DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.997e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0058308
In_3R_K	0.0002936

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	15.6946	0.0004
In_3R_K	8.4621	0.0145

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2466 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12151214	X_12151214_SNP [dm3] X_12257181_SNP [dm6]	A	G	4.001e^-7	0.27	INTRON Ten-a
X	12151320	X_12151320_SNP [dm3] X_12257287_SNP [dm6]	A	T	5.884e^-7	0.27	INTRON Ten-a
X	12151446	X_12151446_SNP [dm3] X_12257413_SNP [dm6]	A	T	6.226e^-7	0.27	INTRON Ten-a
2L	20074668	2L_20074668_SNP [dm3] 2L_20074668_SNP [dm6]	T	C	9.870e^-7	0.27	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	1.048e^-6	0.27	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	1.120e^-6	0.27	INTRON CG3726
X	5404350	X_5404350_SNP [dm3] X_5510317_SNP [dm6]	C	T	1.221e^-6	0.27	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2919910	2L_2919910_SNP [dm3] 2L_2919910_SNP [dm6]	C	T	1.246e^-6	0.27	INTRON lilli
X	12151397	X_12151397_SNP [dm3] X_12257364_SNP [dm6]	C	T	1.295e^-6	0.27	INTRON Ten-a
2L	14426268	2L_14426268_SNP [dm3] 2L_14426268_SNP [dm6]	A	G	1.659e^-6	0.287	INTERGENIC
X	12151545	X_12151545_SNP [dm3] X_12257512_SNP [dm6]	T	C	1.682e^-6	0.287	INTRON Ten-a
2R	13119498	2R_13119498_SNP [dm3] 2R_17231993_SNP [dm6]	C	T	2.095e^-6	0.305	INTRON mbl
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	2.116e^-6	0.305	DOWNSTREAM snoRNA:abba-a INTRON tn
2L	1639637	2L_1639637_SNP [dm3] 2L_1639637_SNP [dm6]	A	G	2.313e^-6	0.31	INTERGENIC
X	5404373	X_5404373_SNP [dm3] X_5510340_SNP [dm6]	A	T	2.929e^-6	0.34	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	3.131e^-6	0.34	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11191327	2L_11191327_SNP [dm3] 2L_11191327_SNP [dm6]	A	T	3.312e^-6	0.34	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	3.358e^-6	0.34	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	17405949	2R_17405949_SNP [dm3] 2R_21518444_SNP [dm6]	C	T	3.449e^-6	0.34	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
2L	14426085	2L_14426085_SNP [dm3] 2L_14426085_SNP [dm6]	T	A	4.122e^-6	0.34	UPSTREAM Cpr35B INTERGENIC
2L	10901648	2L_10901648_SNP [dm3] 2L_10901648_SNP [dm6]	T	G	4.353e^-6	0.34	SYNONYMOUS_CODING CG14070
2L	15200116	2L_15200116_SNP [dm3] 2L_15200116_SNP [dm6]	T	G	4.367e^-6	0.34	UTR_5_PRIME CG4168
2L	20038457	2L_20038457_SNP [dm3] 2L_20038457_SNP [dm6]	C	T	4.492e^-6	0.34	INTRON sNPF
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	4.501e^-6	0.34	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	20042586	2L_20042586_SNP [dm3] 2L_20042586_SNP [dm6]	A	T	4.861e^-6	0.34	INTRON sNPF
X	12151337	X_12151337_SNP [dm3] X_12257304_SNP [dm6]	A	G	5.273e^-6	0.34	INTRON Ten-a
2L	6698981	2L_6698981_SNP [dm3] 2L_6698981_SNP [dm6]	A	T	5.615e^-6	0.34	INTRON Tsp
2R	13119500	2R_13119500_SNP [dm3] 2R_17231995_SNP [dm6]	G	C	6.007e^-6	0.34	INTRON mbl
2L	14419968	2L_14419968_SNP [dm3] 2L_14419968_SNP [dm6]	C	A	6.048e^-6	0.34	INTERGENIC
X	12079754	X_12079754_SNP [dm3] X_12185721_SNP [dm6]	G	A	6.070e^-6	0.34	INTRON Ten-a
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	6.168e^-6	0.34	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	6.430e^-6	0.34	UPSTREAM CG17292 INTRON CG17292
3R	14845685	3R_14845685_SNP [dm3] 3R_19019963_SNP [dm6]	C	T	6.565e^-6	0.34	DOWNSTREAM gukh INTRON gukh
X	19545957	X_19545957_SNP [dm3] X_19651924_SNP [dm6]	C	T	6.572e^-6	0.34	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5073331	3L_5073331_SNP [dm3] 3L_5073331_SNP [dm6]	G	A	6.765e^-6	0.34	INTRON Con
2R	10942238	2R_10942238_SNP [dm3] 2R_15054733_SNP [dm6]	T	G	7.141e^-6	0.34	DOWNSTREAM CG33467 INTERGENIC
2R	17405940	2R_17405940_SNP [dm3] 2R_21518435_SNP [dm6]	A	T	7.194e^-6	0.34	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
2L	13822668	2L_13822668_SNP [dm3] 2L_13822668_SNP [dm6]	T	C	7.243e^-6	0.34	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19545968	X_19545968_SNP [dm3] X_19651935_SNP [dm6]	T	C	7.247e^-6	0.34	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	7.362e^-6	0.34	INTRON sNPF
2L	14426106	2L_14426106_SNP [dm3] 2L_14426106_SNP [dm6]	A	G	7.425e^-6	0.34	UPSTREAM Cpr35B INTERGENIC
3R	14996833	3R_14996833_SNP [dm3] 3R_19171111_SNP [dm6]	C	G	7.946e^-6	0.355	DOWNSTREAM sqz INTERGENIC
2L	7750613	2L_7750613_SNP [dm3] 2L_7750613_SNP [dm6]	C	T	8.141e^-6	0.355	INTERGENIC
3L	3260995	3L_3260995_SNP [dm3] 3L_3260995_SNP [dm6]	C	T	8.403e^-6	0.358	INTRON ckd
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	9.000e^-6	0.37	DOWNSTREAM snoRNA:abba-a INTRON tn
X	12151363	X_12151363_SNP [dm3] X_12257330_SNP [dm6]	T	A	9.228e^-6	0.37	INTRON Ten-a
X	12151241	X_12151241_SNP [dm3] X_12257208_SNP [dm6]	G	A	9.275e^-6	0.37	INTRON Ten-a
2R	19508734	2R_19508734_DEL [dm3] 2R_23621211_DEL [dm6]	TG	T	9.942e^-6	0.386	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12810421	2R_12810421_SNP [dm3] 2R_16922916_SNP [dm6]	T	A	1.033e^-5	0.386	INTERGENIC
3R	24904551	3R_24904551_SNP [dm3] 3R_29078829_SNP [dm6]	T	C	1.035e^-5	0.386	INTRON CG11873
2L	15940976	2L_15940976_SNP [dm3] 2L_15940976_SNP [dm6]	G	A	1.050e^-5	0.386	UPSTREAM CG12448 INTRON beat-Ib
2R	12810415	2R_12810415_SNP [dm3] 2R_16922910_SNP [dm6]	T	C	1.103e^-5	0.393	INTERGENIC
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	1.142e^-5	0.393	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	12313752	2L_12313752_SNP [dm3] 2L_12313752_SNP [dm6]	T	C	1.189e^-5	0.393	DOWNSTREAM aret INTERGENIC
2L	13822658	2L_13822658_SNP [dm3] 2L_13822658_SNP [dm6]	G	A	1.192e^-5	0.393	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	1.209e^-5	0.393	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	12145819	X_12145819_INS [dm3] X_12251786_INS [dm6]	T	TGGGATT	1.232e^-5	0.393	INTRON Ten-a	TF binding site mE1_TFBS_inv
2L	13822626	2L_13822626_SNP [dm3] 2L_13822626_SNP [dm6]	A	G	1.297e^-5	0.393	INTRON b	TF binding site mE1_TFBS_cad
2L	13822642	2L_13822642_INS [dm3] 2L_13822642_INS [dm6]	A	AG	1.297e^-5	0.393	INTRON b	TF binding site mE1_TFBS_cad
X	12151380	X_12151380_SNP [dm3] X_12257347_SNP [dm6]	G	A	1.325e^-5	0.393	INTRON Ten-a
2L	20044880	2L_20044880_SNP [dm3] 2L_20044880_SNP [dm6]	T	C	1.350e^-5	0.393	INTRON sNPF
2R	17405935	2R_17405935_SNP [dm3] 2R_21518430_SNP [dm6]	A	C	1.370e^-5	0.393	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	1.382e^-5	0.393	INTERGENIC
2L	6932879	2L_6932879_SNP [dm3] 2L_6932879_SNP [dm6]	A	G	1.412e^-5	0.393	SYNONYMOUS_CODING CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	1.413e^-5	0.393	INTRON ckd
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	1.417e^-5	0.393	INTRON b	TF binding site mE1_TFBS_cad
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	1.418e^-5	0.393	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
2R	12810422	2R_12810422_SNP [dm3] 2R_16922917_SNP [dm6]	A	G	1.425e^-5	0.393	INTERGENIC
2L	13822639	2L_13822639_SNP [dm3] 2L_13822639_SNP [dm6]	C	A	1.444e^-5	0.393	INTRON b	TF binding site mE1_TFBS_cad
2L	16389889	2L_16389889_SNP [dm3] 2L_16389889_SNP [dm6]	A	T	1.477e^-5	0.395	INTERGENIC
3R	8532736	3R_8532736_SNP [dm3] 3R_12707014_SNP [dm6]	A	T	1.514e^-5	0.395	SPLICE_SITE_REGION mus308 INTRON mus308	TF binding site mE1_TFBS_cad
2R	8410549	2R_8410549_SNP [dm3] 2R_12523044_SNP [dm6]	T	C	1.561e^-5	0.395	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2R	12809928	2R_12809928_SNP [dm3] 2R_16922423_SNP [dm6]	C	A	1.567e^-5	0.395	INTERGENIC
2L	451707	2L_451707_SNP [dm3] 2L_451707_SNP [dm6]	G	T	1.582e^-5	0.395	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3R	14144811	3R_14144811_SNP [dm3] 3R_18319089_SNP [dm6]	A	C	1.608e^-5	0.395	INTRON CG31235
3R	21584080	3R_21584080_SNP [dm3] 3R_25758358_SNP [dm6]	G	T	1.622e^-5	0.395	INTRON LpR1
2R	12539528	2R_12539528_SNP [dm3] 2R_16652023_SNP [dm6]	A	G	1.637e^-5	0.395	DOWNSTREAM gprs INTRON Amyrel	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13822634	2L_13822634_SNP [dm3] 2L_13822634_SNP [dm6]	T	G	1.644e^-5	0.395	INTRON b	TF binding site mE1_TFBS_cad
3L	18093340	3L_18093340_SNP [dm3] 3L_18100240_SNP [dm6]	C	A	1.695e^-5	0.402	INTRON CG13698
2L	798775	2L_798775_SNP [dm3] 2L_798775_SNP [dm6]	C	T	1.742e^-5	0.408	INTERGENIC
2L	20017099	2L_20017099_SNP [dm3] 2L_20017099_SNP [dm6]	T	G	1.765e^-5	0.409	UTR_5_PRIME CG43861
2L	1628272	2L_1628272_SNP [dm3] 2L_1628272_SNP [dm6]	A	T	1.823e^-5	0.417	INTERGENIC
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	1.917e^-5	0.419	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10707071	3L_10707071_SNP [dm3] 3L_10713971_SNP [dm6]	T	A	1.931e^-5	0.419	INTERGENIC
3L	3261013	3L_3261013_DEL [dm3] 3L_3261013_DEL [dm6]	ATT	G	1.938e^-5	0.419	INTRON ckd
3L	9865111	3L_9865111_SNP [dm3] 3L_9872011_SNP [dm6]	A	T	1.982e^-5	0.419	INTERGENIC	TF binding site mE1_TFBS_D
2R	12883841	2R_12883841_SNP [dm3] 2R_16996336_SNP [dm6]	A	G	1.997e^-5	0.419	DOWNSTREAM ste24c & 1 other INTRON ste24c & 1 other
3L	18090802	3L_18090802_SNP [dm3] 3L_18097702_SNP [dm6]	G	A	2.058e^-5	0.419	INTRON CG13698
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	2.077e^-5	0.419	UPSTREAM CG17292 INTRON CG17292
2L	435921	2L_435921_SNP [dm3] 2L_435921_SNP [dm6]	G	A	2.087e^-5	0.419	INTRON ex	TF binding site mE1_TFBS_chinmo
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	2.121e^-5	0.419	INTRON Cad87A
2R	13119399	2R_13119399_SNP [dm3] 2R_17231894_SNP [dm6]	T	C	2.125e^-5	0.419	INTRON mbl
3R	8363127	3R_8363127_SNP [dm3] 3R_12537405_SNP [dm6]	A	G	2.143e^-5	0.419	INTRON Octbeta3R
2R	14283427	2R_14283427_SNP [dm3] 2R_18395922_SNP [dm6]	T	G	2.147e^-5	0.419	DOWNSTREAM Idgf5 & 1 other INTERGENIC
2L	2287292	2L_2287292_SNP [dm3] 2L_2287292_SNP [dm6]	G	C	2.171e^-5	0.419	UTR_3_PRIME CG42658 UPSTREAM CG31681
2L	16389803	2L_16389803_SNP [dm3] 2L_16389803_SNP [dm6]	G	A	2.180e^-5	0.419	INTERGENIC
2L	1180652	2L_1180652_SNP [dm3] 2L_1180652_SNP [dm6]	G	T	2.188e^-5	0.419	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	2.203e^-5	0.419	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11310575	3R_11310575_SNP [dm3] 3R_15484853_SNP [dm6]	A	C	2.211e^-5	0.419	UTR_3_PRIME Trissin DOWNSTREAM Trissin & 1 other
2R	19415959	2R_19415959_SNP [dm3] 2R_23528436_SNP [dm6]	G	A	2.300e^-5	0.429	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2L	20066236	2L_20066236_SNP [dm3] 2L_20066236_SNP [dm6]	A	T	2.326e^-5	0.429	UPSTREAM bwa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	2.405e^-5	0.429	INTRON btsz
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	2.407e^-5	0.429	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
X	12149873	X_12149873_SNP [dm3] X_12255840_SNP [dm6]	G	C	2.420e^-5	0.429	INTRON Ten-a
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	2.498e^-5	0.429	UPSTREAM CR45374 INTERGENIC
2L	20033971	2L_20033971_SNP [dm3] 2L_20033971_SNP [dm6]	G	A	2.537e^-5	0.429	INTRON sNPF
2L	20034823	2L_20034823_SNP [dm3] 2L_20034823_SNP [dm6]	C	G	2.537e^-5	0.429	INTRON sNPF
2L	20038743	2L_20038743_SNP [dm3] 2L_20038743_SNP [dm6]	T	A	2.537e^-5	0.429	INTRON sNPF
2L	20041009	2L_20041009_SNP [dm3] 2L_20041009_SNP [dm6]	T	C	2.537e^-5	0.429	INTRON sNPF
2L	20041346	2L_20041346_SNP [dm3] 2L_20041346_SNP [dm6]	G	A	2.537e^-5	0.429	INTRON sNPF
2R	13791536	2R_13791536_SNP [dm3] 2R_17904031_SNP [dm6]	A	T	2.542e^-5	0.429	INTRON Elk
2L	455532	2L_455532_SNP [dm3] 2L_455532_SNP [dm6]	G	C	2.569e^-5	0.43	UTR_5_PRIME CG4133 DOWNSTREAM CG4164 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20034226	2L_20034226_SNP [dm3] 2L_20034226_SNP [dm6]	T	G	2.659e^-5	0.431	INTRON sNPF
2L	7226594	2L_7226594_DEL [dm3] 2L_7226594_DEL [dm6]	GG	G	2.671e^-5	0.431	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	20033297	2L_20033297_SNP [dm3] 2L_20033297_SNP [dm6]	T	C	2.686e^-5	0.431	INTRON sNPF
2L	8961614	2L_8961614_SNP [dm3] 2L_8961614_SNP [dm6]	A	T	2.725e^-5	0.431	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985	TF binding site mE1_TFBS_HSA
3R	18975046	3R_18975046_SNP [dm3] 3R_23149324_SNP [dm6]	G	T	2.736e^-5	0.431	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10938601	2R_10938601_SNP [dm3] 2R_15051096_SNP [dm6]	T	C	2.775e^-5	0.431	UPSTREAM CR43622 INTERGENIC
3L	3594782	3L_3594782_SNP [dm3] 3L_3594782_SNP [dm6]	A	G	2.786e^-5	0.431	DOWNSTREAM snRNA:U7 INTRON Eip63E
2L	20073185	2L_20073185_SNP [dm3] 2L_20073185_SNP [dm6]	G	C	2.794e^-5	0.431	UTR_3_PRIME bwa UPSTREAM CG10730 DOWNSTREAM pr INTRON bwa
3R	14144814	3R_14144814_INS [dm3] 3R_18319092_INS [dm6]	A	AG	2.800e^-5	0.431	INTRON CG31235
3R	14144817	3R_14144817_INS [dm3] 3R_18319095_INS [dm6]	A	ATGT	2.800e^-5	0.431	INTRON CG31235
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	2.844e^-5	0.434	INTRON CG9134
3R	11751072	3R_11751072_SNP [dm3] 3R_15925350_SNP [dm6]	A	G	2.872e^-5	0.434	UPSTREAM CG34276 INTRON CG4221
2L	10900460	2L_10900460_SNP [dm3] 2L_10900460_SNP [dm6]	T	C	2.903e^-5	0.436	DOWNSTREAM CG14070 INTERGENIC
3R	21584117	3R_21584117_SNP [dm3] 3R_25758395_SNP [dm6]	T	A	2.992e^-5	0.441	INTRON LpR1
2L	14426235	2L_14426235_SNP [dm3] 2L_14426235_SNP [dm6]	G	A	2.993e^-5	0.441	INTERGENIC
2L	10498922	2L_10498922_SNP [dm3] 2L_10498922_SNP [dm6]	G	T	3.026e^-5	0.441	INTRON Myo31DF
X	8156951	X_8156951_SNP [dm3] X_8262918_SNP [dm6]	A	C	3.031e^-5	0.441	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	14441403	3L_14441403_SNP [dm3] 3L_14448303_SNP [dm6]	A	G	3.076e^-5	0.444	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	451536	2L_451536_SNP [dm3] 2L_451536_SNP [dm6]	T	G	3.100e^-5	0.444	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3R	6185601	3R_6185601_SNP [dm3] 3R_10359879_SNP [dm6]	G	A	3.127e^-5	0.444	NON_SYNONYMOUS_CODING jumu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19850398	2R_19850398_SNP [dm3] 2R_23962875_SNP [dm6]	C	T	3.155e^-5	0.445	UPSTREAM Fmo-1 & 1 other INTERGENIC
2L	10079084	2L_10079084_SNP [dm3] 2L_10079084_SNP [dm6]	G	A	3.232e^-5	0.452	INTRON CG44153
3R	14144819	3R_14144819_SNP [dm3] 3R_18319097_SNP [dm6]	T	C	3.426e^-5	0.47	INTRON CG31235
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	3.451e^-5	0.47	UPSTREAM CG17292 INTRON CG17292
2L	10079739	2L_10079739_SNP [dm3] 2L_10079739_SNP [dm6]	T	C	3.454e^-5	0.47	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	449650	2L_449650_SNP [dm3] 2L_449650_SNP [dm6]	C	A	3.492e^-5	0.47	SYNONYMOUS_CODING crq DOWNSTREAM ex	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7750638	2L_7750638_SNP [dm3] 2L_7750638_SNP [dm6]	C	T	3.509e^-5	0.47	INTERGENIC
3L	6636954	3L_6636954_SNP [dm3] 3L_6643854_SNP [dm6]	A	C	3.517e^-5	0.47	INTERGENIC
2R	20298292	2R_20298292_SNP [dm3] 2R_24410769_SNP [dm6]	C	T	3.572e^-5	0.47	UTR_5_PRIME SerT UPSTREAM SerT
2L	436697	2L_436697_SNP [dm3] 2L_436697_SNP [dm6]	T	C	3.600e^-5	0.47	INTRON ex
2R	19115777	2R_19115777_SNP [dm3] 2R_23228254_SNP [dm6]	C	A	3.640e^-5	0.47	INTERGENIC
3L	7149700	3L_7149700_SNP [dm3] 3L_7156600_SNP [dm6]	C	T	3.650e^-5	0.47	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12306993	2L_12306993_SNP [dm3] 2L_12306993_SNP [dm6]	T	C	3.674e^-5	0.47	INTRON aret
2L	12316820	2L_12316820_SNP [dm3] 2L_12316820_SNP [dm6]	G	A	3.690e^-5	0.47	UPSTREAM CR45282 EXON CR45283
2L	10498874	2L_10498874_SNP [dm3] 2L_10498874_SNP [dm6]	G	A	3.708e^-5	0.47	INTRON Myo31DF
2R	12145383	2R_12145383_SNP [dm3] 2R_16257878_SNP [dm6]	A	G	3.730e^-5	0.47	INTRON CngA
2R	9203414	2R_9203414_SNP [dm3] 2R_13315909_SNP [dm6]	T	A	3.730e^-5	0.47	INTERGENIC
2L	20028157	2L_20028157_DEL [dm3] 2L_20028157_DEL [dm6]	CTTCTCCTTGAAATCCGGAC...	C	3.755e^-5	0.47	UTR_5_PRIME sNPF	TF binding site mE1_TFBS_cnc
2L	20034659	2L_20034659_SNP [dm3] 2L_20034659_SNP [dm6]	G	T	3.832e^-5	0.476	INTRON sNPF
3R	6559080	3R_6559080_SNP [dm3] 3R_10733358_SNP [dm6]	A	G	3.906e^-5	0.479	INTERGENIC
3L	17039423	3L_17039423_SNP [dm3] 3L_17046323_SNP [dm6]	A	C	3.907e^-5	0.479	INTRON TpnC73F
2L	13371657	2L_13371657_SNP [dm3] 2L_13371657_SNP [dm6]	A	G	3.963e^-5	0.483	SYNONYMOUS_CODING CG9305 UPSTREAM CG9306	TF binding site mE1_TFBS_cad
2R	7453771	2R_7453771_SNP [dm3] 2R_11566266_SNP [dm6]	G	T	4.009e^-5	0.485	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	14615690	3L_14615690_SNP [dm3] 3L_14622590_SNP [dm6]	C	T	4.144e^-5	0.496	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	4.156e^-5	0.496	UTR_3_PRIME CG5278
2L	9671012	2L_9671012_SNP [dm3] 2L_9671012_SNP [dm6]	G	A	4.192e^-5	0.496	EXON CR44150
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	4.203e^-5	0.496	INTRON CG15630
3L	18215312	3L_18215312_INS [dm3] 3L_18222212_INS [dm6]	A	AGCG	4.231e^-5	0.496	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2768603	2L_2768603_SNP [dm3] 2L_2768603_SNP [dm6]	T	G	4.318e^-5	0.496	UTR_3_PRIME Taf10 & 1 other UPSTREAM Taf10b DOWNSTREAM colt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	16945040	X_16945040_SNP [dm3] X_17051007_SNP [dm6]	T	C	4.333e^-5	0.496	INTRON CG45002
3R	26559040	3R_26559040_SNP [dm3] 3R_30733318_SNP [dm6]	C	A	4.333e^-5	0.496	INTERGENIC
2R	14883662	2R_14883662_SNP [dm3] 2R_18996157_SNP [dm6]	G	T	4.344e^-5	0.496	INTRON tn
2L	437171	2L_437171_SNP [dm3] 2L_437171_SNP [dm6]	T	C	4.366e^-5	0.496	INTRON ex
2L	1635705	2L_1635705_SNP [dm3] 2L_1635705_SNP [dm6]	G	A	4.420e^-5	0.496	INTERGENIC
X	19747288	X_19747288_SNP [dm3] X_19853255_SNP [dm6]	G	A	4.454e^-5	0.496	NON_SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	13081755	3R_13081755_SNP [dm3] 3R_17256033_SNP [dm6]	G	T	4.465e^-5	0.496	INTRON beat-IIb
2R	14883324	2R_14883324_INS [dm3] 2R_18995819_INS [dm6]	T	TAAT	4.473e^-5	0.496	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	14899269	3R_14899269_SNP [dm3] 3R_19073547_SNP [dm6]	G	A	4.577e^-5	0.501	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	14144807	3R_14144807_INS [dm3] 3R_18319085_INS [dm6]	A	ACGATAGCTGT...	4.577e^-5	0.501	INTRON CG31235
3R	14144803	3R_14144803_INS [dm3] 3R_18319081_INS [dm6]	G	GTAG	4.618e^-5	0.501	INTRON CG31235
3R	2583040	3R_2583040_SNP [dm3] 3R_6757318_SNP [dm6]	G	A	4.693e^-5	0.501	INTRON bcd	TF binding site mE1_TFBS_cad
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	4.700e^-5	0.501	INTRON CG32791
3R	14144935	3R_14144935_SNP [dm3] 3R_18319213_SNP [dm6]	A	G	4.715e^-5	0.501	INTRON CG31235
3L	3393481	3L_3393481_SNP [dm3] 3L_3393481_SNP [dm6]	G	A	4.739e^-5	0.501	UPSTREAM CR45737 INTERGENIC
3R	14144858	3R_14144858_SNP [dm3] 3R_18319136_SNP [dm6]	G	A	4.741e^-5	0.501	INTRON CG31235
3L	15476658	3L_15476658_SNP [dm3] 3L_15483558_SNP [dm6]	T	A	4.774e^-5	0.501	DOWNSTREAM Ran-like INTERGENIC
2L	10498904	2L_10498904_SNP [dm3] 2L_10498904_SNP [dm6]	G	C	4.818e^-5	0.501	INTRON Myo31DF
3R	14832728	3R_14832728_SNP [dm3] 3R_19007006_SNP [dm6]	C	A	4.823e^-5	0.501	INTRON gukh
3R	14144874	3R_14144874_SNP [dm3] 3R_18319152_SNP [dm6]	C	G	4.860e^-5	0.501	INTRON CG31235
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	4.862e^-5	0.501	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	4.912e^-5	0.504	INTERGENIC
2R	8294683	2R_8294683_SNP [dm3] 2R_12407178_SNP [dm6]	G	A	4.986e^-5	0.508	UPSTREAM Cpr49Ag DOWNSTREAM Cpr49Af INTERGENIC
2L	13822662	2L_13822662_SNP [dm3] 2L_13822662_SNP [dm6]	T	C	5.090e^-5	0.514	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	5.113e^-5	0.514	INTRON fru
2L	13822371	2L_13822371_INS [dm3] 2L_13822371_INS [dm6]	A	ATAATATTA	5.124e^-5	0.514	INTRON b
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	5.258e^-5	0.514	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	3181169	2L_3181169_SNP [dm3] 2L_3181169_SNP [dm6]	C	A	5.258e^-5	0.514	INTRON CG34393
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	5.290e^-5	0.514	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10300865	3L_10300865_SNP [dm3] 3L_10307765_SNP [dm6]	A	T	5.344e^-5	0.514	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10819299	2L_10819299_SNP [dm3] 2L_10819299_SNP [dm6]	A	C	5.381e^-5	0.514	SYNONYMOUS_CODING CG6508 INTRON Nos	TF binding site mE1_TFBS_cad
2R	12441555	2R_12441555_SNP [dm3] 2R_16554050_SNP [dm6]	G	T	5.450e^-5	0.514	UPSTREAM Syn2 INTRON Syn2	TF binding site BDTNP1_TFBS_twi
3L	20931108	3L_20931108_SNP [dm3] 3L_20938008_SNP [dm6]	T	A	5.481e^-5	0.514	INTRON fng
3R	6185668	3R_6185668_SNP [dm3] 3R_10359946_SNP [dm6]	A	C	5.503e^-5	0.514	INTRON jumu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8960999	2L_8960999_SNP [dm3] 2L_8960999_SNP [dm6]	T	A	5.508e^-5	0.514	SYNONYMOUS_CODING CG9525	TF binding site mE1_TFBS_HSA
3L	17409637	3L_17409637_SNP [dm3] 3L_17416537_SNP [dm6]	C	T	5.518e^-5	0.514	UPSTREAM blot INTRON blot	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14845602	3R_14845602_SNP [dm3] 3R_19019880_SNP [dm6]	G	A	5.521e^-5	0.514	UTR_3_PRIME gukh INTRON gukh
3R	25007165	3R_25007165_SNP [dm3] 3R_29181443_SNP [dm6]	C	T	5.546e^-5	0.514	NON_SYNONYMOUS_CODING CG14509
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	5.547e^-5	0.514	INTRON sNPF
2L	8962172	2L_8962172_SNP [dm3] 2L_8962172_SNP [dm6]	T	C	5.567e^-5	0.514	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
2L	4406465	2L_4406465_SNP [dm3] 2L_4406465_SNP [dm6]	G	T	5.654e^-5	0.514	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14144944	3R_14144944_SNP [dm3] 3R_18319222_SNP [dm6]	G	A	5.660e^-5	0.514	INTRON CG31235
2L	1412244	2L_1412244_SNP [dm3] 2L_1412244_SNP [dm6]	T	C	5.681e^-5	0.514	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	14433591	2L_14433591_SNP [dm3] 2L_14433591_SNP [dm6]	G	T	5.689e^-5	0.514	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1644392	2L_1644392_SNP [dm3] 2L_1644392_SNP [dm6]	T	G	5.713e^-5	0.514	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	14545710	X_14545710_SNP [dm3] X_14651677_SNP [dm6]	C	A	5.847e^-5	0.514	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18652252	X_18652252_SNP [dm3] X_18758219_SNP [dm6]	G	A	5.865e^-5	0.514	INTERGENIC
3R	9894573	3R_9894573_SNP [dm3] 3R_14068851_SNP [dm6]	G	T	5.869e^-5	0.514	INTRON foxo
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	5.877e^-5	0.514	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	11689804	3R_11689804_SNP [dm3] 3R_15864082_SNP [dm6]	T	C	5.886e^-5	0.514	INTRON CG31183
3L	11231486	3L_11231486_SNP [dm3] 3L_11238386_SNP [dm6]	G	T	5.890e^-5	0.514	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2443401	X_2443401_DEL [dm3] X_2549368_DEL [dm6]	TCCAATTA	T	5.904e^-5	0.514	INTERGENIC
2L	20022479	2L_20022479_SNP [dm3] 2L_20022479_SNP [dm6]	G	A	5.919e^-5	0.514	INTERGENIC
3L	18100941	3L_18100941_SNP [dm3] 3L_18107841_SNP [dm6]	A	T	5.919e^-5	0.514	DOWNSTREAM CG5147 & 1 other INTERGENIC
2L	4420418	2L_4420418_SNP [dm3] 2L_4420418_SNP [dm6]	T	G	5.920e^-5	0.514	INTRON CG15431
3R	25005119	3R_25005119_SNP [dm3] 3R_29179397_SNP [dm6]	T	C	5.945e^-5	0.514	INTRON CG14509	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	5.968e^-5	0.514	INTERGENIC
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	6.016e^-5	0.514	INTERGENIC
3R	11751055	3R_11751055_SNP [dm3] 3R_15925333_SNP [dm6]	G	T	6.058e^-5	0.514	UPSTREAM CG34276 INTRON CG4221
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	6.159e^-5	0.514	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24821956	3R_24821956_SNP [dm3] 3R_28996234_SNP [dm6]	C	T	6.163e^-5	0.514	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12317016	2L_12317016_SNP [dm3] 2L_12317016_SNP [dm6]	T	A	6.167e^-5	0.514	UPSTREAM CR45282 EXON CR45283
3L	21595047	3L_21595047_SNP [dm3] 3L_21601947_SNP [dm6]	C	G	6.172e^-5	0.514	INTRON TfAP-2	TF binding site mE1_TFBS_cad
X	12692622	X_12692622_SNP [dm3] X_12798589_SNP [dm6]	C	T	6.172e^-5	0.514	INTRON Pde9
2L	2287185	2L_2287185_SNP [dm3] 2L_2287185_SNP [dm6]	A	G	6.189e^-5	0.514	UTR_3_PRIME CG42658 UPSTREAM CG31681
2L	11618566	2L_11618566_SNP [dm3] 2L_11618566_SNP [dm6]	C	T	6.238e^-5	0.515	INTRON kek2
2L	2287280	2L_2287280_SNP [dm3] 2L_2287280_SNP [dm6]	G	T	6.351e^-5	0.52	UTR_3_PRIME CG42658 UPSTREAM CG31681
X	7231069	X_7231069_SNP [dm3] X_7337036_SNP [dm6]	A	C	6.351e^-5	0.52	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	13126703	X_13126703_SNP [dm3] X_13232670_SNP [dm6]	T	G	6.380e^-5	0.52	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10700395	3L_10700395_SNP [dm3] 3L_10707295_SNP [dm6]	A	G	6.421e^-5	0.52	INTERGENIC
3L	18097912	3L_18097912_SNP [dm3] 3L_18104812_SNP [dm6]	T	C	6.475e^-5	0.52	INTRON CG13698
3R	14381739	3R_14381739_SNP [dm3] 3R_18556017_SNP [dm6]	A	G	6.513e^-5	0.52	INTERGENIC
X	7231085	X_7231085_SNP [dm3] X_7337052_SNP [dm6]	C	T	6.572e^-5	0.52	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16386321	2L_16386321_SNP [dm3] 2L_16386321_SNP [dm6]	A	G	6.591e^-5	0.52	INTERGENIC
3R	14328034	3R_14328034_SNP [dm3] 3R_18502312_SNP [dm6]	G	T	6.622e^-5	0.52	INTRON fru
2R	12145274	2R_12145274_SNP [dm3] 2R_16257769_SNP [dm6]	G	T	6.625e^-5	0.52	INTRON CngA
2R	8279814	2R_8279814_SNP [dm3] 2R_12392309_SNP [dm6]	T	C	6.644e^-5	0.52	UPSTREAM Cpr49Ad INTERGENIC
3R	14864851	3R_14864851_SNP [dm3] 3R_19039129_SNP [dm6]	A	G	6.647e^-5	0.52	INTRON CG6026	TF binding site mE1_TFBS_cad
3L	15476663	3L_15476663_INS [dm3] 3L_15483563_INS [dm6]	A	AT	6.658e^-5	0.52	DOWNSTREAM Ran-like INTERGENIC
2L	7968790	2L_7968790_INS [dm3] 2L_7968790_INS [dm6]	G	GAG	6.719e^-5	0.52	INTRON Snoo
2R	7439128	2R_7439128_SNP [dm3] 2R_11551623_SNP [dm6]	G	A	6.737e^-5	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13081797	3R_13081797_SNP [dm3] 3R_17256075_SNP [dm6]	C	T	6.740e^-5	0.52	INTRON beat-IIb
2L	12316821	2L_12316821_SNP [dm3] 2L_12316821_SNP [dm6]	C	T	6.787e^-5	0.52	UPSTREAM CR45282 EXON CR45283
2R	8298547	2R_8298547_SNP [dm3] 2R_12411042_SNP [dm6]	T	C	6.814e^-5	0.52	NON_SYNONYMOUS_CODING CG33627 DOWNSTREAM CG33626
2R	12818831	2R_12818831_SNP [dm3] 2R_16931326_SNP [dm6]	T	A	6.818e^-5	0.52	INTRON Pkc53E
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	6.889e^-5	0.523	INTRON 4EHP
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	6.931e^-5	0.524	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	6.964e^-5	0.524	INTRON Rh7
3R	11689817	3R_11689817_SNP [dm3] 3R_15864095_SNP [dm6]	C	T	7.009e^-5	0.524	INTRON CG31183
3R	11689820	3R_11689820_MNP [dm3] 3R_15864098_MNP [dm6]	CCA	GAT	7.009e^-5	0.524	INTRON CG31183
2L	2764032	2L_2764032_SNP [dm3] 2L_2764032_SNP [dm6]	A	C	7.068e^-5	0.526	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
2L	3880350	2L_3880350_SNP [dm3] 2L_3880350_SNP [dm6]	A	G	7.116e^-5	0.528	UPSTREAM capu INTRON capu
2L	13087494	2L_13087494_SNP [dm3] 2L_13087494_SNP [dm6]	C	A	7.205e^-5	0.529	INTERGENIC
2L	2764027	2L_2764027_SNP [dm3] 2L_2764027_SNP [dm6]	A	T	7.222e^-5	0.529	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
2L	8882636	2L_8882636_SNP [dm3] 2L_8882636_SNP [dm6]	A	T	7.225e^-5	0.529	INTERGENIC	TF binding site mE1_TFBS_cnc
X	6409874	X_6409874_SNP [dm3] X_6515841_SNP [dm6]	A	C	7.249e^-5	0.529	INTRON CG42340
3L	9258709	3L_9258709_SNP [dm3] 3L_9265609_SNP [dm6]	T	G	7.276e^-5	0.529	INTRON GluRIB
3L	18120328	3L_18120328_SNP [dm3] 3L_18127228_SNP [dm6]	G	A	7.312e^-5	0.53	INTERGENIC
3R	9896175	3R_9896175_INS [dm3] 3R_14070453_INS [dm6]	T	TCT	7.341e^-5	0.53	INTRON foxo
2L	1359731	2L_1359731_SNP [dm3] 2L_1359731_SNP [dm6]	A	T	7.413e^-5	0.532	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
2L	3880357	2L_3880357_DEL [dm3] 2L_3880357_DEL [dm6]	CT	C	7.435e^-5	0.532	UPSTREAM capu INTRON capu
3R	14144836	3R_14144836_SNP [dm3] 3R_18319114_SNP [dm6]	A	T	7.489e^-5	0.532	INTRON CG31235
3R	26190737	3R_26190737_SNP [dm3] 3R_30365015_SNP [dm6]	C	T	7.492e^-5	0.532	UTR_3_PRIME hdc
3L	7597034	3L_7597034_SNP [dm3] 3L_7603934_SNP [dm6]	C	T	7.548e^-5	0.534	NON_SYNONYMOUS_CODING CG33275
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	7.706e^-5	0.543	INTRON Cad87A
2R	15173039	2R_15173039_SNP [dm3] 2R_19285534_SNP [dm6]	A	G	7.739e^-5	0.543	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2L	4428825	2L_4428825_SNP [dm3] 2L_4428825_SNP [dm6]	G	A	7.754e^-5	0.543	INTRON CG15431
3L	6630176	3L_6630176_DEL [dm3] 3L_6637076_DEL [dm6]	AGCACTTTGATTT...	A	7.801e^-5	0.543	INTERGENIC
2L	12317035	2L_12317035_SNP [dm3] 2L_12317035_SNP [dm6]	T	G	7.847e^-5	0.543	UPSTREAM CR45282 EXON CR45283
2L	12317044	2L_12317044_SNP [dm3] 2L_12317044_SNP [dm6]	G	T	7.847e^-5	0.543	UPSTREAM CR45282 & 1 other EXON CR45283
2L	8346154	2L_8346154_SNP [dm3] 2L_8346154_SNP [dm6]	C	T	7.996e^-5	0.551	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3253013	3L_3253013_SNP [dm3] 3L_3253013_SNP [dm6]	A	G	8.139e^-5	0.559	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14886780	2R_14886780_INS [dm3] 2R_18999275_INS [dm6]	C	TT	8.184e^-5	0.56	INTRON tn
3R	14144955	3R_14144955_SNP [dm3] 3R_18319233_SNP [dm6]	A	C	8.212e^-5	0.56	INTRON CG31235
2L	15103795	2L_15103795_SNP [dm3] 2L_15103795_SNP [dm6]	C	T	8.294e^-5	0.561	INTERGENIC
2L	8372639	2L_8372639_SNP [dm3] 2L_8372639_SNP [dm6]	C	T	8.297e^-5	0.561	INTRON CG17292
2L	15760944	2L_15760944_SNP [dm3] 2L_15760944_SNP [dm6]	G	C	8.329e^-5	0.561	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	13822519	2L_13822519_SNP [dm3] 2L_13822519_SNP [dm6]	C	T	8.345e^-5	0.561	INTRON b
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	8.432e^-5	0.563	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7231029	X_7231029_SNP [dm3] X_7336996_SNP [dm6]	C	T	8.436e^-5	0.563	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	8.489e^-5	0.564	UPSTREAM CR45374 INTERGENIC
2L	1359739	2L_1359739_SNP [dm3] 2L_1359739_SNP [dm6]	G	A	8.618e^-5	0.564	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
2R	8331587	2R_8331587_SNP [dm3] 2R_12444082_SNP [dm6]	C	A	8.628e^-5	0.564	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	8.643e^-5	0.564	INTRON Eip63E
3L	3260934	3L_3260934_SNP [dm3] 3L_3260934_SNP [dm6]	T	C	8.669e^-5	0.564	INTRON ckd
3L	19378294	3L_19378294_SNP [dm3] 3L_19385194_SNP [dm6]	A	G	8.673e^-5	0.564	INTRON CG32206
2R	12812876	2R_12812876_SNP [dm3] 2R_16925371_SNP [dm6]	T	C	8.682e^-5	0.564	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10141031	3R_10141031_DEL [dm3] 3R_14315309_DEL [dm6]	TATTTT	T	8.754e^-5	0.564	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15103796	2L_15103796_SNP [dm3] 2L_15103796_SNP [dm6]	G	A	8.763e^-5	0.564	INTERGENIC
3R	6959170	3R_6959170_SNP [dm3] 3R_11133448_SNP [dm6]	C	T	8.802e^-5	0.564	INTERGENIC
2L	2287325	2L_2287325_SNP [dm3] 2L_2287325_SNP [dm6]	A	T	8.833e^-5	0.564	UTR_3_PRIME CG42658 UPSTREAM CG31681
2R	18367426	2R_18367426_SNP [dm3] 2R_22479921_SNP [dm6]	G	A	8.846e^-5	0.564	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2764738	2L_2764738_SNP [dm3] 2L_2764738_SNP [dm6]	C	G	8.886e^-5	0.564	NON_SYNONYMOUS_CODING CG3077 DOWNSTREAM Trn-SR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	8.899e^-5	0.564	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15103789	2L_15103789_SNP [dm3] 2L_15103789_SNP [dm6]	C	T	8.900e^-5	0.564	INTERGENIC
2L	16389562	2L_16389562_SNP [dm3] 2L_16389562_SNP [dm6]	A	G	8.962e^-5	0.564	INTERGENIC
2R	13772545	2R_13772545_SNP [dm3] 2R_17885040_SNP [dm6]	A	T	8.975e^-5	0.564	INTRON Elk
3L	6636925	3L_6636925_SNP [dm3] 3L_6643825_SNP [dm6]	T	G	9.038e^-5	0.564	DOWNSTREAM CR45239 INTERGENIC
3R	21586545	3R_21586545_SNP [dm3] 3R_25760823_SNP [dm6]	C	A	9.070e^-5	0.564	UPSTREAM LpR1 INTRON LpR1
3L	18437834	3L_18437834_SNP [dm3] 3L_18444734_SNP [dm6]	G	T	9.074e^-5	0.564	INTERGENIC
3R	14668033	3R_14668033_SNP [dm3] 3R_18842311_SNP [dm6]	T	G	9.090e^-5	0.564	INTRON CG18208
3R	14144892	3R_14144892_SNP [dm3] 3R_18319170_SNP [dm6]	C	G	9.156e^-5	0.564	INTRON CG31235
2L	12317056	2L_12317056_SNP [dm3] 2L_12317056_SNP [dm6]	T	A	9.166e^-5	0.564	UPSTREAM CR45282 & 1 other EXON CR45283
2L	8372116	2L_8372116_SNP [dm3] 2L_8372116_SNP [dm6]	A	G	9.177e^-5	0.564	UPSTREAM CG17292 INTRON CG17292
2L	6299795	2L_6299795_SNP [dm3] 2L_6299795_SNP [dm6]	G	T	9.202e^-5	0.564	INTRON Ddr
3L	24297951	3L_24297951_SNP [dm3] 3L_24304851_SNP [dm6]	C	A	9.325e^-5	0.565	INTERGENIC
2L	11386564	2L_11386564_SNP [dm3] 2L_11386564_SNP [dm6]	A	T	9.326e^-5	0.565	INTERGENIC	regulatory region REDfly_CRMs
2L	15103804	2L_15103804_SNP [dm3] 2L_15103804_SNP [dm6]	C	T	9.405e^-5	0.565	INTERGENIC
2L	15103807	2L_15103807_SNP [dm3] 2L_15103807_SNP [dm6]	G	A	9.405e^-5	0.565	INTERGENIC
X	3421691	X_3421691_SNP [dm3] X_3527658_SNP [dm6]	G	A	9.409e^-5	0.565	INTRON CG32791
2L	1628991	2L_1628991_SNP [dm3] 2L_1628991_SNP [dm6]	G	A	9.464e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7750655	2L_7750655_INS [dm3] 2L_7750655_INS [dm6]	T	TAGCTACCA	9.500e^-5	0.565	INTERGENIC
2R	13407032	2R_13407032_DEL [dm3] 2R_17519527_DEL [dm6]	GG	G	9.571e^-5	0.565	UTR_3_PRIME Patronin DOWNSTREAM Patronin & 1 other
2L	15103798	2L_15103798_SNP [dm3] 2L_15103798_SNP [dm6]	T	G	9.590e^-5	0.565	INTERGENIC
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	9.606e^-5	0.565	INTRON plum
2R	12813095	2R_12813095_SNP [dm3] 2R_16925590_SNP [dm6]	T	A	9.612e^-5	0.565	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
2R	17781611	2R_17781611_DEL [dm3] 2R_21894106_DEL [dm6]	CA	C	9.628e^-5	0.565	INTRON Fili
3R	14144959	3R_14144959_SNP [dm3] 3R_18319237_SNP [dm6]	G	A	9.634e^-5	0.565	INTRON CG31235
2R	12810346	2R_12810346_SNP [dm3] 2R_16922841_SNP [dm6]	G	T	9.640e^-5	0.565	INTERGENIC
2L	6288211	2L_6288211_SNP [dm3] 2L_6288211_SNP [dm6]	G	A	9.776e^-5	0.57	INTRON Ddr	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_twi
2L	429537	2L_429537_SNP [dm3] 2L_429537_SNP [dm6]	C	T	9.782e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	9.824e^-5	0.57	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	4795627	2L_4795627_SNP [dm3] 2L_4795627_SNP [dm6]	T	C	9.948e^-5	0.57	DOWNSTREAM Clect27 INTRON CG3294	TF binding site mE1_TFBS_cad
3R	14144866	3R_14144866_SNP [dm3] 3R_18319144_SNP [dm6]	T	G	1.003e^-4	0.57	INTRON CG31235
3L	17483097	3L_17483097_SNP [dm3] 3L_17489997_SNP [dm6]	A	T	1.004e^-4	0.57	INTRON Oatp74D
2L	15985891	2L_15985891_SNP [dm3] 2L_15985891_SNP [dm6]	T	G	1.009e^-4	0.57	INTERGENIC
X	4912255	X_4912255_SNP [dm3] X_5018222_SNP [dm6]	G	A	1.010e^-4	0.57	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2177439	X_2177439_SNP [dm3] X_2283406_SNP [dm6]	G	C	1.010e^-4	0.57	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	1.011e^-4	0.57	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12487143	3L_12487143_SNP [dm3] 3L_12494043_SNP [dm6]	T	G	1.013e^-4	0.57	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18097773	3L_18097773_SNP [dm3] 3L_18104673_SNP [dm6]	G	A	1.015e^-4	0.57	INTRON CG13698
2R	17151972	2R_17151972_SNP [dm3] 2R_21264467_SNP [dm6]	C	T	1.016e^-4	0.57	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	1.025e^-4	0.57	INTRON CG42663
2L	12088916	2L_12088916_SNP [dm3] 2L_12088916_SNP [dm6]	T	A	1.026e^-4	0.57	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7919043	3R_7919043_SNP [dm3] 3R_12093321_SNP [dm6]	G	T	1.027e^-4	0.57	INTERGENIC
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	1.031e^-4	0.57	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23900528	3R_23900528_DEL [dm3] 3R_28074806_DEL [dm6]	GCAAT	G	1.032e^-4	0.57	INTRON CG34362
2L	492839	2L_492839_SNP [dm3] 2L_492839_SNP [dm6]	T	C	1.034e^-4	0.57	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12810334	2R_12810334_SNP [dm3] 2R_16922829_SNP [dm6]	G	A	1.034e^-4	0.57	INTERGENIC
X	4912282	X_4912282_SNP [dm3] X_5018249_SNP [dm6]	A	C	1.037e^-4	0.57	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7231106	X_7231106_SNP [dm3] X_7337073_SNP [dm6]	G	A	1.045e^-4	0.573	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15996147	2L_15996147_SNP [dm3] 2L_15996147_SNP [dm6]	A	T	1.052e^-4	0.575	INTERGENIC
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	1.056e^-4	0.575	UPSTREAM CG15553 INTERGENIC
2L	17685778	2L_17685778_SNP [dm3] 2L_17685778_SNP [dm6]	T	C	1.059e^-4	0.575	INTRON CadN
X	8839978	X_8839978_SNP [dm3] X_8945945_SNP [dm6]	G	T	1.062e^-4	0.575	INTRON rdgA
3L	16029728	3L_16029728_SNP [dm3] 3L_16036628_SNP [dm6]	C	T	1.064e^-4	0.575	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
2L	8962986	2L_8962986_SNP [dm3] 2L_8962986_SNP [dm6]	T	C	1.066e^-4	0.575	UPSTREAM CG9525 INTRON CG32985
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	1.073e^-4	0.575	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3R	23476429	3R_23476429_SNP [dm3] 3R_27650707_SNP [dm6]	C	T	1.073e^-4	0.575	UTR_5_PRIME tau DOWNSTREAM tau INTRON tau
2L	20622105	2L_20622105_SNP [dm3] 2L_20622105_SNP [dm6]	T	C	1.076e^-4	0.575	INTRON CR44909
3R	14907240	3R_14907240_SNP [dm3] 3R_19081518_SNP [dm6]	C	A	1.083e^-4	0.576	INTRON cdi
X	12737752	X_12737752_SNP [dm3] X_12843719_SNP [dm6]	T	A	1.092e^-4	0.576	INTRON Pde9
2L	490180	2L_490180_SNP [dm3] 2L_490180_SNP [dm6]	C	A	1.093e^-4	0.576	UTR_5_PRIME ush UPSTREAM ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9956629	2R_9956629_SNP [dm3] 2R_14069124_SNP [dm6]	G	A	1.095e^-4	0.576	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16029797	3L_16029797_SNP [dm3] 3L_16036697_SNP [dm6]	C	T	1.096e^-4	0.576	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_dl
3R	7757573	3R_7757573_SNP [dm3] 3R_11931851_SNP [dm6]	C	G	1.096e^-4	0.576	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
2L	3880180	2L_3880180_SNP [dm3] 2L_3880180_SNP [dm6]	T	A	1.100e^-4	0.577	UPSTREAM capu INTRON capu
3L	22016211	3L_22016211_SNP [dm3] 3L_22023111_SNP [dm6]	G	C	1.104e^-4	0.577	INTERGENIC
2R	9338314	2R_9338314_SNP [dm3] 2R_13450809_SNP [dm6]	C	T	1.110e^-4	0.579	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18794274	3L_18794274_SNP [dm3] 3L_18801174_SNP [dm6]	T	C	1.121e^-4	0.582	UTR_5_PRIME ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3252996	3L_3252996_SNP [dm3] 3L_3252996_SNP [dm6]	A	G	1.125e^-4	0.582	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10141004	3R_10141004_SNP [dm3] 3R_14315282_SNP [dm6]	G	A	1.128e^-4	0.582	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	11148079	2L_11148079_SNP [dm3] 2L_11148079_SNP [dm6]	C	A	1.130e^-4	0.582	INTRON Gyc32E
2L	14478684	2L_14478684_SNP [dm3] 2L_14478684_SNP [dm6]	C	T	1.134e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8296164	2R_8296164_SNP [dm3] 2R_12408659_SNP [dm6]	G	C	1.136e^-4	0.582	UPSTREAM CG30050 DOWNSTREAM Cpr49Ag INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	490858	2L_490858_SNP [dm3] 2L_490858_SNP [dm6]	A	G	1.140e^-4	0.583	UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17446073	3R_17446073_SNP [dm3] 3R_21620351_SNP [dm6]	G	C	1.147e^-4	0.585	UTR_3_PRIME E2f	TF binding site BDTNP1_TFBS_dl
2R	6141559	2R_6141559_SNP [dm3] 2R_10254054_SNP [dm6]	A	G	1.153e^-4	0.585	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4407121	2L_4407121_SNP [dm3] 2L_4407121_SNP [dm6]	C	T	1.154e^-4	0.585	NON_SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	16870418	2R_16870418_SNP [dm3] 2R_20982913_SNP [dm6]	T	C	1.157e^-4	0.585	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651	TF binding site mE1_TFBS_cad
2R	2486335	2R_2486335_SNP [dm3] 2R_6598830_SNP [dm6]	T	C	1.169e^-4	0.588	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16473173	3R_16473173_SNP [dm3] 3R_20647451_SNP [dm6]	G	A	1.172e^-4	0.588	SYNONYMOUS_CODING GluRIIE
2R	9338238	2R_9338238_SNP [dm3] 2R_13450733_SNP [dm6]	C	T	1.173e^-4	0.588	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12489466	3L_12489466_SNP [dm3] 3L_12496366_SNP [dm6]	T	G	1.179e^-4	0.589	INTRON CG10657
2R	10937107	2R_10937107_SNP [dm3] 2R_15049602_SNP [dm6]	T	C	1.183e^-4	0.589	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12317066	2L_12317066_SNP [dm3] 2L_12317066_SNP [dm6]	T	G	1.184e^-4	0.589	UPSTREAM CR45282 & 1 other EXON CR45283
2L	7481027	2L_7481027_SNP [dm3] 2L_7481027_SNP [dm6]	C	A	1.202e^-4	0.596	SYNONYMOUS_CODING Ziz
2R	7263218	2R_7263218_SNP [dm3] 2R_11375713_SNP [dm6]	C	T	1.216e^-4	0.599	SYNONYMOUS_CODING CG13203	TF binding site mE1_TFBS_chinmo
2R	7263323	2R_7263323_SNP [dm3] 2R_11375818_SNP [dm6]	T	C	1.216e^-4	0.599	SYNONYMOUS_CODING CG13203	TF binding site mE1_TFBS_chinmo
3L	17055298	3L_17055298_SNP [dm3] 3L_17062198_SNP [dm6]	A	G	1.218e^-4	0.599	UTR_3_PRIME Rbp6
3L	7104371	3L_7104371_SNP [dm3] 3L_7111271_SNP [dm6]	C	T	1.220e^-4	0.599	UTR_5_PRIME form3
2L	13822611	2L_13822611_SNP [dm3] 2L_13822611_SNP [dm6]	A	T	1.223e^-4	0.599	INTRON b
2R	10938533	2R_10938533_SNP [dm3] 2R_15051028_SNP [dm6]	C	T	1.228e^-4	0.6	UPSTREAM CR43622 INTERGENIC
3L	3253006	3L_3253006_SNP [dm3] 3L_3253006_SNP [dm6]	T	A	1.231e^-4	0.6	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5073276	3L_5073276_SNP [dm3] 3L_5073276_SNP [dm6]	G	T	1.242e^-4	0.604	INTRON Con
2L	11191501	2L_11191501_SNP [dm3] 2L_11191501_SNP [dm6]	T	C	1.254e^-4	0.607	INTRON Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11252014	3L_11252014_DEL [dm3] 3L_11258914_DEL [dm6]	GGATCTTCGGCACGTG...	G	1.256e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8119638	3R_8119638_SNP [dm3] 3R_12293916_SNP [dm6]	T	C	1.263e^-4	0.609	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6699066	2L_6699066_SNP [dm3] 2L_6699066_SNP [dm6]	G	C	1.273e^-4	0.61	INTRON Tsp
3R	8346782	3R_8346782_SNP [dm3] 3R_12521060_SNP [dm6]	T	C	1.293e^-4	0.61	INTRON Octbeta3R
2R	14126926	2R_14126926_SNP [dm3] 2R_18239421_SNP [dm6]	G	T	1.296e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12317033	2L_12317033_SNP [dm3] 2L_12317033_SNP [dm6]	T	A	1.307e^-4	0.61	UPSTREAM CR45282 EXON CR45283
2L	12317043	2L_12317043_SNP [dm3] 2L_12317043_SNP [dm6]	C	G	1.307e^-4	0.61	UPSTREAM CR45282 & 1 other EXON CR45283
2L	490795	2L_490795_SNP [dm3] 2L_490795_SNP [dm6]	G	A	1.308e^-4	0.61	UTR_5_PRIME ush UPSTREAM ush INTRON ush	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	2749391	X_2749391_SNP [dm3] X_2855358_SNP [dm6]	T	A	1.308e^-4	0.61	INTRON kirre
3L	17610370	3L_17610370_SNP [dm3] 3L_17617270_SNP [dm6]	C	G	1.315e^-4	0.61	INTRON Eip74EF
2R	8332538	2R_8332538_SNP [dm3] 2R_12445033_SNP [dm6]	A	G	1.317e^-4	0.61	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12179421	3L_12179421_SNP [dm3] 3L_12186321_SNP [dm6]	A	G	1.318e^-4	0.61	INTRON CG6910
2R	6141565	2R_6141565_SNP [dm3] 2R_10254060_SNP [dm6]	G	T	1.318e^-4	0.61	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5198177	3R_5198177_SNP [dm3] 3R_9372455_SNP [dm6]	C	T	1.320e^-4	0.61	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	1.325e^-4	0.61	DOWNSTREAM Cpn INTERGENIC
2L	5677013	2L_5677013_SNP [dm3] 2L_5677013_SNP [dm6]	T	A	1.328e^-4	0.61	INTERGENIC
2L	1643643	2L_1643643_SNP [dm3] 2L_1643643_SNP [dm6]	T	G	1.330e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	1.330e^-4	0.61	INTRON Rh7
3R	5758380	3R_5758380_SNP [dm3] 3R_9932658_SNP [dm6]	C	A	1.331e^-4	0.61	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8866359	3R_8866359_SNP [dm3] 3R_13040637_SNP [dm6]	G	A	1.331e^-4	0.61	SYNONYMOUS_CODING snk UTR_3_PRIME snk DOWNSTREAM CG11668	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19452021	2R_19452021_SNP [dm3] 2R_23564498_SNP [dm6]	A	G	1.332e^-4	0.61	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10035637	2L_10035637_SNP [dm3] 2L_10035637_SNP [dm6]	C	T	1.339e^-4	0.61	INTRON obst-B
2L	460361	2L_460361_SNP [dm3] 2L_460361_SNP [dm6]	C	T	1.342e^-4	0.61	UTR_3_PRIME CG4297	TF binding site mE1_TFBS_cad
3R	8245778	3R_8245778_SNP [dm3] 3R_12420056_SNP [dm6]	T	C	1.344e^-4	0.61	NON_SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_cad
3L	8951411	3L_8951411_SNP [dm3] 3L_8958311_SNP [dm6]	G	A	1.347e^-4	0.61	UPSTREAM CG13313 DOWNSTREAM mRpL12 INTERGENIC
2L	20017224	2L_20017224_SNP [dm3] 2L_20017224_SNP [dm6]	G	T	1.353e^-4	0.61	UTR_5_PRIME CG43861
2L	20017225	2L_20017225_SNP [dm3] 2L_20017225_SNP [dm6]	G	T	1.353e^-4	0.61	UTR_5_PRIME CG43861
2R	6051947	2R_6051947_SNP [dm3] 2R_10164442_SNP [dm6]	G	A	1.353e^-4	0.61	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	1.354e^-4	0.61	INTERGENIC
2L	1628094	2L_1628094_SNP [dm3] 2L_1628094_SNP [dm6]	A	T	1.357e^-4	0.61	INTERGENIC
3R	16472598	3R_16472598_SNP [dm3] 3R_20646876_SNP [dm6]	C	T	1.364e^-4	0.612	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	1.368e^-4	0.612	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18695603	3R_18695603_SNP [dm3] 3R_22869881_SNP [dm6]	G	T	1.374e^-4	0.614	INTERGENIC
3L	18100895	3L_18100895_SNP [dm3] 3L_18107795_SNP [dm6]	C	G	1.384e^-4	0.614	DOWNSTREAM CG5147 & 1 other INTERGENIC
2R	10947479	2R_10947479_SNP [dm3] 2R_15059974_SNP [dm6]	T	C	1.386e^-4	0.614	INTERGENIC
2L	20029331	2L_20029331_MNP [dm3] 2L_20029331_MNP [dm6]	TTT	AAA	1.389e^-4	0.614	INTRON sNPF
2L	4065306	2L_4065306_SNP [dm3] 2L_4065306_SNP [dm6]	A	T	1.389e^-4	0.614	INTRON ed
3R	14465583	3R_14465583_SNP [dm3] 3R_18639861_SNP [dm6]	C	G	1.391e^-4	0.614	INTRON qin & 1 other
3L	18100978	3L_18100978_SNP [dm3] 3L_18107878_SNP [dm6]	A	T	1.407e^-4	0.618	UTR_3_PRIME CG5147 DOWNSTREAM mRpS26
2R	12818830	2R_12818830_SNP [dm3] 2R_16931325_SNP [dm6]	G	A	1.408e^-4	0.618	INTRON Pkc53E
3R	10275566	3R_10275566_SNP [dm3] 3R_14449844_SNP [dm6]	C	T	1.411e^-4	0.618	INTRON cv-c
3L	7018223	3L_7018223_SNP [dm3] 3L_7025123_SNP [dm6]	A	G	1.417e^-4	0.618	DOWNSTREAM CG17744 INTRON Mp
3R	16472591	3R_16472591_SNP [dm3] 3R_20646869_SNP [dm6]	T	A	1.423e^-4	0.618	INTRON GluRIIE
3R	16472596	3R_16472596_SNP [dm3] 3R_20646874_SNP [dm6]	T	A	1.423e^-4	0.618	INTRON GluRIIE
3R	16472615	3R_16472615_SNP [dm3] 3R_20646893_SNP [dm6]	G	A	1.423e^-4	0.618	SYNONYMOUS_CODING GluRIIE
3L	11534244	3L_11534244_SNP [dm3] 3L_11541144_SNP [dm6]	T	C	1.429e^-4	0.619	INTRON Mob2
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	1.433e^-4	0.619	INTRON Cad87A
3R	20114212	3R_20114212_SNP [dm3] 3R_24288490_SNP [dm6]	G	A	1.439e^-4	0.619	UTR_3_PRIME CG6356 DOWNSTREAM CG34290	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	1.440e^-4	0.619	INTRON Dscam1
3L	15467097	3L_15467097_SNP [dm3] 3L_15473997_SNP [dm6]	C	T	1.443e^-4	0.619	INTRON CG7804
2L	13726506	2L_13726506_SNP [dm3] 2L_13726506_SNP [dm6]	G	T	1.453e^-4	0.621	INTERGENIC
X	16640270	X_16640270_SNP [dm3] X_16746237_SNP [dm6]	A	T	1.464e^-4	0.621	UPSTREAM CG9634 INTRON CG9634
3L	11179072	3L_11179072_SNP [dm3] 3L_11185972_SNP [dm6]	A	T	1.465e^-4	0.621	INTRON GlcAT-P
2L	11190970	2L_11190970_SNP [dm3] 2L_11190970_SNP [dm6]	T	C	1.466e^-4	0.621	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	18099665	3L_18099665_SNP [dm3] 3L_18106565_SNP [dm6]	C	T	1.469e^-4	0.621	UPSTREAM mRpS26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	1.469e^-4	0.621	INTRON Cad87A
3R	6187878	3R_6187878_SNP [dm3] 3R_10362156_SNP [dm6]	C	G	1.469e^-4	0.621	UTR_3_PRIME Rfx DOWNSTREAM Rfx & 1 other
2L	4425564	2L_4425564_DEL [dm3] 2L_4425564_DEL [dm6]	AA	A	1.475e^-4	0.622	INTRON CG15431
2R	13201522	2R_13201522_SNP [dm3] 2R_17314017_SNP [dm6]	T	G	1.493e^-4	0.627	INTRON mbl
2L	2861182	2L_2861182_SNP [dm3] 2L_2861182_SNP [dm6]	T	C	1.498e^-4	0.627	INTRON CG2991	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	14014674	2L_14014674_SNP [dm3] 2L_14014674_SNP [dm6]	C	T	1.507e^-4	0.627	INTRON bgm	TF binding site mE1_TFBS_Trl
3L	9330921	3L_9330921_SNP [dm3] 3L_9337821_SNP [dm6]	C	T	1.517e^-4	0.627	SYNONYMOUS_CODING PGRP-LA UTR_3_PRIME PGRP-LA UPSTREAM PGRP-LC
2L	7969941	2L_7969941_SNP [dm3] 2L_7969941_SNP [dm6]	A	G	1.518e^-4	0.627	INTRON Snoo
2L	2763913	2L_2763913_SNP [dm3] 2L_2763913_SNP [dm6]	T	A	1.523e^-4	0.627	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
2R	12450220	2R_12450220_SNP [dm3] 2R_16562715_SNP [dm6]	C	T	1.529e^-4	0.627	INTRON DAT
2R	6051847	2R_6051847_SNP [dm3] 2R_10164342_SNP [dm6]	G	A	1.529e^-4	0.627	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2R	18121524	2R_18121524_SNP [dm3] 2R_22234019_SNP [dm6]	C	T	1.529e^-4	0.627	INTERGENIC
3L	3253001	3L_3253001_SNP [dm3] 3L_3253001_SNP [dm6]	T	A	1.531e^-4	0.627	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21586420	3R_21586420_SNP [dm3] 3R_25760698_SNP [dm6]	T	G	1.540e^-4	0.627	UPSTREAM LpR1 INTRON LpR1
3L	6637274	3L_6637274_SNP [dm3] 3L_6644174_SNP [dm6]	C	T	1.547e^-4	0.627	INTERGENIC
2L	12420514	2L_12420514_SNP [dm3] 2L_12420514_SNP [dm6]	G	T	1.547e^-4	0.627	INTRON vir-1
2L	12420491	2L_12420491_SNP [dm3] 2L_12420491_SNP [dm6]	T	A	1.552e^-4	0.627	INTRON vir-1
2L	1359670	2L_1359670_SNP [dm3] 2L_1359670_SNP [dm6]	G	T	1.554e^-4	0.627	SYNONYMOUS_CODING CG31659 UTR_5_PRIME CG31659 DOWNSTREAM NLaz
3R	16472583	3R_16472583_SNP [dm3] 3R_20646861_SNP [dm6]	G	A	1.554e^-4	0.627	INTRON GluRIIE
X	19502412	X_19502412_SNP [dm3] X_19608379_SNP [dm6]	G	T	1.554e^-4	0.627	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11618573	2L_11618573_SNP [dm3] 2L_11618573_SNP [dm6]	T	C	1.555e^-4	0.627	INTRON kek2
2R	6141585	2R_6141585_SNP [dm3] 2R_10254080_SNP [dm6]	G	A	1.560e^-4	0.627	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1629859	2L_1629859_SNP [dm3] 2L_1629859_SNP [dm6]	G	A	1.561e^-4	0.627	INTERGENIC
2L	9946250	2L_9946250_SNP [dm3] 2L_9946250_SNP [dm6]	T	C	1.570e^-4	0.627	INTRON CG5853	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15863689	2L_15863689_INS [dm3] 2L_15863689_INS [dm6]	T	TA	1.572e^-4	0.627	DOWNSTREAM CR42791 INTERGENIC
2L	1375359	2L_1375359_SNP [dm3] 2L_1375359_SNP [dm6]	T	C	1.573e^-4	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4065305	2L_4065305_SNP [dm3] 2L_4065305_SNP [dm6]	T	A	1.575e^-4	0.627	INTRON ed
3R	7149402	3R_7149402_SNP [dm3] 3R_11323680_SNP [dm6]	G	A	1.576e^-4	0.627	INTERGENIC
2L	15768337	2L_15768337_SNP [dm3] 2L_15768337_SNP [dm6]	T	A	1.577e^-4	0.627	UTR_5_PRIME wek DOWNSTREAM Ku80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11179056	3L_11179056_SNP [dm3] 3L_11185956_SNP [dm6]	G	C	1.582e^-4	0.627	INTRON GlcAT-P
2R	10867616	2R_10867616_SNP [dm3] 2R_14980111_SNP [dm6]	C	A	1.583e^-4	0.627	UTR_3_PRIME ckn
2L	15305299	2L_15305299_SNP [dm3] 2L_15305299_SNP [dm6]	C	T	1.584e^-4	0.627	INTERGENIC
2R	20114165	2R_20114165_SNP [dm3] 2R_24226642_SNP [dm6]	G	A	1.593e^-4	0.628	INTRON CG30419
3R	14455611	3R_14455611_SNP [dm3] 3R_18629889_SNP [dm6]	G	A	1.595e^-4	0.628	SYNONYMOUS_CODING CG14301 INTRON qin
X	4602724	X_4602724_SNP [dm3] X_4708691_SNP [dm6]	T	C	1.596e^-4	0.628	UPSTREAM Proc-R INTRON Proc-R
X	8564217	X_8564217_SNP [dm3] X_8670184_SNP [dm6]	C	G	1.602e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8436989	2R_8436989_SNP [dm3] 2R_12549484_SNP [dm6]	A	G	1.603e^-4	0.628	INTRON fra
2L	1645524	2L_1645524_SNP [dm3] 2L_1645524_SNP [dm6]	T	A	1.610e^-4	0.629	INTERGENIC
2L	4677430	2L_4677430_SNP [dm3] 2L_4677430_SNP [dm6]	C	T	1.612e^-4	0.629	INTERGENIC
3L	9856857	3L_9856857_SNP [dm3] 3L_9863757_SNP [dm6]	A	T	1.631e^-4	0.632	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2765447	2L_2765447_SNP [dm3] 2L_2765447_SNP [dm6]	G	C	1.635e^-4	0.632	UPSTREAM aph-1 INTRON CG3077	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20044931	2L_20044931_SNP [dm3] 2L_20044931_SNP [dm6]	A	G	1.635e^-4	0.632	INTRON sNPF
3R	7760894	3R_7760894_INS [dm3] 3R_11935172_INS [dm6]	C	CT	1.635e^-4	0.632	INTRON Cad87A
2R	16550638	2R_16550638_DEL [dm3] 2R_20663133_DEL [dm6]	AG	A	1.641e^-4	0.633	DOWNSTREAM CG13437 INTRON Fem-1	TF binding site mE1_TFBS_cad
3L	2792980	3L_2792980_SNP [dm3] 3L_2792980_SNP [dm6]	A	G	1.656e^-4	0.635	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12138487	2R_12138487_SNP [dm3] 2R_16250982_SNP [dm6]	C	T	1.659e^-4	0.635	INTRON CngA
3R	11689818	3R_11689818_SNP [dm3] 3R_15864096_SNP [dm6]	T	A	1.660e^-4	0.635	INTRON CG31183
2L	16199855	2L_16199855_DEL [dm3] 2L_16199855_DEL [dm6]	AA	A	1.662e^-4	0.635	INTERGENIC
2R	8292491	2R_8292491_SNP [dm3] 2R_12404986_SNP [dm6]	T	A	1.663e^-4	0.635	UTR_3_PRIME Cpr49Ae UPSTREAM Cpr49Af	TF binding site BDTNP1_TFBS_twi
2L	470443	2L_470443_SNP [dm3] 2L_470443_SNP [dm6]	C	T	1.672e^-4	0.636	INTRON CG4297
2L	15008722	2L_15008722_SNP [dm3] 2L_15008722_SNP [dm6]	T	C	1.673e^-4	0.636	NON_SYNONYMOUS_CODING l_2_35Bc DOWNSTREAM NC2beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14545734	X_14545734_SNP [dm3] X_14651701_SNP [dm6]	G	A	1.675e^-4	0.636	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20018671	2L_20018671_SNP [dm3] 2L_20018671_SNP [dm6]	T	C	1.685e^-4	0.638	INTERGENIC
3R	13081529	3R_13081529_SNP [dm3] 3R_17255807_SNP [dm6]	G	T	1.694e^-4	0.638	INTRON beat-IIb
3R	13081532	3R_13081532_SNP [dm3] 3R_17255810_SNP [dm6]	T	C	1.694e^-4	0.638	INTRON beat-IIb
3L	7149669	3L_7149669_SNP [dm3] 3L_7156569_SNP [dm6]	A	G	1.702e^-4	0.638	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18794109	3L_18794109_SNP [dm3] 3L_18801009_SNP [dm6]	G	A	1.703e^-4	0.638	UTR_5_PRIME ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	14004131	2L_14004131_SNP [dm3] 2L_14004131_SNP [dm6]	G	A	1.706e^-4	0.638	INTERGENIC
2L	2768945	2L_2768945_SNP [dm3] 2L_2768945_SNP [dm6]	T	C	1.709e^-4	0.638	SYNONYMOUS_CODING colt DOWNSTREAM Taf10	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	16640457	X_16640457_SNP [dm3] X_16746424_SNP [dm6]	T	C	1.713e^-4	0.638	UPSTREAM CG9634 INTRON CG9634
3L	5343409	3L_5343409_SNP [dm3] 3L_5350309_SNP [dm6]	C	A	1.713e^-4	0.638	INTRON lama
3R	8346712	3R_8346712_SNP [dm3] 3R_12520990_SNP [dm6]	T	A	1.720e^-4	0.638	INTRON Octbeta3R
2R	3344059	2R_3344059_SNP [dm3] 2R_7456554_SNP [dm6]	A	G	1.724e^-4	0.638	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19342916	3R_19342916_SNP [dm3] 3R_23517194_SNP [dm6]	A	C	1.724e^-4	0.638	INTRON Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18153006	2L_18153006_SNP [dm3] 2L_18153006_SNP [dm6]	A	T	1.725e^-4	0.638	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	4151683	3R_4151683_SNP [dm3] 3R_8325961_SNP [dm6]	A	T	1.733e^-4	0.639	DOWNSTREAM CG7443 INTRON Poxm
2L	4407482	2L_4407482_SNP [dm3] 2L_4407482_SNP [dm6]	T	C	1.735e^-4	0.639	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20264605	3R_20264605_SNP [dm3] 3R_24438883_SNP [dm6]	A	G	1.740e^-4	0.639	UPSTREAM CR43455 INTRON nAChRalpha1
X	13297429	X_13297429_INS [dm3] X_13403396_INS [dm6]	T	TAGGT	1.742e^-4	0.639	UPSTREAM CG12725 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3340226	2R_3340226_SNP [dm3] 2R_7452721_SNP [dm6]	A	C	1.747e^-4	0.639	DOWNSTREAM CR45320 INTERGENIC
X	19602161	X_19602161_SNP [dm3] X_19708128_SNP [dm6]	A	G	1.763e^-4	0.639	INTRON meso18E	TF binding site mE1_TFBS_chinmo
2L	5677054	2L_5677054_SNP [dm3] 2L_5677054_SNP [dm6]	G	C	1.766e^-4	0.639	INTERGENIC
2L	11618498	2L_11618498_SNP [dm3] 2L_11618498_SNP [dm6]	T	G	1.766e^-4	0.639	INTRON kek2
3L	18497219	3L_18497219_SNP [dm3] 3L_18504119_SNP [dm6]	G	A	1.767e^-4	0.639	INTERGENIC
3R	10137715	3R_10137715_SNP [dm3] 3R_14311993_SNP [dm6]	G	A	1.768e^-4	0.639	INTRON CG31321	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16473179	3R_16473179_SNP [dm3] 3R_20647457_SNP [dm6]	T	G	1.768e^-4	0.639	SYNONYMOUS_CODING GluRIIE
2R	9411946	2R_9411946_SNP [dm3] 2R_13524441_SNP [dm6]	T	C	1.773e^-4	0.639	UPSTREAM CG13332 INTRON Vmat
3R	14465614	3R_14465614_SNP [dm3] 3R_18639892_SNP [dm6]	A	G	1.775e^-4	0.639	INTRON qin & 1 other
2L	20019859	2L_20019859_SNP [dm3] 2L_20019859_SNP [dm6]	A	G	1.775e^-4	0.639	INTERGENIC
2R	8410531	2R_8410531_SNP [dm3] 2R_12523026_SNP [dm6]	A	G	1.782e^-4	0.639	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
3R	20113407	3R_20113407_SNP [dm3] 3R_24287685_SNP [dm6]	C	T	1.782e^-4	0.639	DOWNSTREAM CG34290 INTRON CG6356
2R	9708755	2R_9708755_SNP [dm3] 2R_13821250_SNP [dm6]	G	A	1.790e^-4	0.639	SYNONYMOUS_CODING fl_2_d	TF binding site mE1_TFBS_sens
3L	3252961	3L_3252961_SNP [dm3] 3L_3252961_SNP [dm6]	C	G	1.792e^-4	0.639	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12138504	2R_12138504_SNP [dm3] 2R_16250999_SNP [dm6]	T	G	1.796e^-4	0.639	INTRON CngA
2R	12138525	2R_12138525_SNP [dm3] 2R_16251020_SNP [dm6]	T	G	1.796e^-4	0.639	INTRON CngA
2L	4795686	2L_4795686_SNP [dm3] 2L_4795686_SNP [dm6]	G	C	1.801e^-4	0.639	DOWNSTREAM Clect27 INTRON CG3294
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	1.803e^-4	0.639	INTRON nAChRalpha3
2L	20044729	2L_20044729_SNP [dm3] 2L_20044729_SNP [dm6]	T	A	1.822e^-4	0.645	INTRON sNPF
3R	9896509	3R_9896509_SNP [dm3] 3R_14070787_SNP [dm6]	C	T	1.825e^-4	0.645	INTRON foxo
2L	7969776	2L_7969776_SNP [dm3] 2L_7969776_SNP [dm6]	A	T	1.836e^-4	0.645	INTRON Snoo
2L	14014535	2L_14014535_SNP [dm3] 2L_14014535_SNP [dm6]	T	G	1.838e^-4	0.645	INTRON bgm	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9793552	3L_9793552_SNP [dm3] 3L_9800452_SNP [dm6]	T	C	1.841e^-4	0.645	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
2L	13822500	2L_13822500_SNP [dm3] 2L_13822500_SNP [dm6]	A	G	1.841e^-4	0.645	INTRON b
2L	20134030	2L_20134030_SNP [dm3] 2L_20134030_SNP [dm6]	G	C	1.847e^-4	0.645	NON_SYNONYMOUS_CODING CG10651
3L	24522364	3L_24522364_SNP [dm3] 3L_24529264_SNP [dm6]	A	G	1.851e^-4	0.645	INTERGENIC
3R	23723880	3R_23723880_SNP [dm3] 3R_27898158_SNP [dm6]	T	C	1.857e^-4	0.645	INTRON CG34353
3R	14619219	3R_14619219_SNP [dm3] 3R_18793497_SNP [dm6]	A	C	1.864e^-4	0.645	UTR_5_PRIME CG7720 INTRON CG7720
2L	3762601	2L_3762601_SNP [dm3] 2L_3762601_SNP [dm6]	A	T	1.878e^-4	0.645	INTRON CG43707	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	1.878e^-4	0.645	INTRON Cad87A
3L	16029811	3L_16029811_SNP [dm3] 3L_16036711_SNP [dm6]	G	A	1.884e^-4	0.645	INTRON CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	17747224	2L_17747224_SNP [dm3] 2L_17747224_SNP [dm6]	A	T	1.886e^-4	0.645	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	3560845	2R_3560845_SNP [dm3] 2R_7673340_SNP [dm6]	C	A	1.887e^-4	0.645	DOWNSTREAM mRpL52 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18220941	3L_18220941_SNP [dm3] 3L_18227841_SNP [dm6]	T	A	1.891e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2R	13167798	2R_13167798_SNP [dm3] 2R_17280293_SNP [dm6]	A	C	1.894e^-4	0.645	INTRON mbl
3R	7768516	3R_7768516_SNP [dm3] 3R_11942794_SNP [dm6]	T	C	1.899e^-4	0.645	INTRON Cad87A
2L	20031850	2L_20031850_SNP [dm3] 2L_20031850_SNP [dm6]	A	T	1.901e^-4	0.645	INTRON sNPF
3R	8512857	3R_8512857_SNP [dm3] 3R_12687135_SNP [dm6]	T	C	1.906e^-4	0.645	INTRON kar	TF binding site mE1_TFBS_cad
2L	16389787	2L_16389787_SNP [dm3] 2L_16389787_SNP [dm6]	G	T	1.908e^-4	0.645	INTERGENIC
3R	14928529	3R_14928529_SNP [dm3] 3R_19102807_SNP [dm6]	A	G	1.908e^-4	0.645	INTRON CG6040
X	14545736	X_14545736_SNP [dm3] X_14651703_SNP [dm6]	C	T	1.909e^-4	0.645	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	1.915e^-4	0.645	INTRON CG11319
X	17157689	X_17157689_SNP [dm3] X_17263656_SNP [dm6]	T	A	1.917e^-4	0.645	INTRON f	TF binding site mE1_TFBS_inv
2L	20037004	2L_20037004_SNP [dm3] 2L_20037004_SNP [dm6]	G	A	1.918e^-4	0.645	INTRON sNPF
3L	11179042	3L_11179042_SNP [dm3] 3L_11185942_SNP [dm6]	G	A	1.925e^-4	0.645	INTRON GlcAT-P
2R	15286074	2R_15286074_SNP [dm3] 2R_19398569_SNP [dm6]	T	C	1.926e^-4	0.645	UTR_3_PRIME hts DOWNSTREAM hts
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	1.932e^-4	0.645	INTERGENIC
2L	12573240	2L_12573240_SNP [dm3] 2L_12573240_SNP [dm6]	G	T	1.933e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20045100	2L_20045100_SNP [dm3] 2L_20045100_SNP [dm6]	A	G	1.934e^-4	0.645	INTRON sNPF	transposable element FlyBase
2L	12357227	2L_12357227_SNP [dm3] 2L_12357227_SNP [dm6]	C	G	1.934e^-4	0.645	NON_SYNONYMOUS_CODING CG17010 INTRON bru-2	TF binding site mE1_TFBS_chinmo
2L	15200253	2L_15200253_SNP [dm3] 2L_15200253_SNP [dm6]	G	C	1.940e^-4	0.645	UTR_5_PRIME CG4168
2L	15200254	2L_15200254_DEL [dm3] 2L_15200254_DEL [dm6]	GTATCATAA	G	1.940e^-4	0.645	UTR_5_PRIME CG4168
3L	16029842	3L_16029842_SNP [dm3] 3L_16036742_SNP [dm6]	C	T	1.940e^-4	0.645	INTRON CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	14545712	X_14545712_SNP [dm3] X_14651679_SNP [dm6]	C	T	1.949e^-4	0.646	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12156971	2L_12156971_INS [dm3] 2L_12156971_INS [dm6]	A	AAGAGACTATCAGATG...	1.954e^-4	0.646	INTRON CG31760	transposable element FlyBase
2L	18130152	2L_18130152_SNP [dm3] 2L_18130152_SNP [dm6]	T	A	1.956e^-4	0.646	UTR_3_PRIME kel DOWNSTREAM CG5758
3L	15476484	3L_15476484_SNP [dm3] 3L_15483384_SNP [dm6]	C	G	1.962e^-4	0.646	INTERGENIC
3L	7387140	3L_7387140_SNP [dm3] 3L_7394040_SNP [dm6]	C	A	1.977e^-4	0.646	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14606871	3L_14606871_SNP [dm3] 3L_14613771_SNP [dm6]	T	C	1.978e^-4	0.646	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	1.979e^-4	0.646	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13726505	2L_13726505_SNP [dm3] 2L_13726505_SNP [dm6]	G	T	1.979e^-4	0.646	INTERGENIC
2L	1545443	2L_1545443_SNP [dm3] 2L_1545443_SNP [dm6]	A	T	1.988e^-4	0.646	INTERGENIC
3L	11428037	3L_11428037_SNP [dm3] 3L_11434937_SNP [dm6]	A	G	1.992e^-4	0.646	SYNONYMOUS_CODING CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	1956520	3R_1956520_SNP [dm3] 3R_6130798_SNP [dm6]	T	C	1.993e^-4	0.646	INTERGENIC
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	1.994e^-4	0.646	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18424584	3R_18424584_SNP [dm3] 3R_22598862_SNP [dm6]	G	T	2.000e^-4	0.646	INTRON Efa6	TF binding site mE1_TFBS_Trl
3L	9504821	3L_9504821_SNP [dm3] 3L_9511721_SNP [dm6]	A	T	2.002e^-4	0.646	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	4899468	X_4899468_SNP [dm3] X_5005435_SNP [dm6]	C	T	2.006e^-4	0.646	INTRON CR44833
2L	8751610	2L_8751610_SNP [dm3] 2L_8751610_SNP [dm6]	G	A	2.007e^-4	0.646	UPSTREAM CG12438 DOWNSTREAM CG45307 INTERGENIC
2L	4226210	2L_4226210_SNP [dm3] 2L_4226210_SNP [dm6]	A	G	2.008e^-4	0.646	SYNONYMOUS_CODING CG3702	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	2.009e^-4	0.646	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22535391	3R_22535391_SNP [dm3] 3R_26709669_SNP [dm6]	C	A	2.015e^-4	0.646	INTRON amon
3L	9215863	3L_9215863_SNP [dm3] 3L_9222763_SNP [dm6]	C	A	2.020e^-4	0.646	DOWNSTREAM CR45408 INTERGENIC
3R	11076039	3R_11076039_SNP [dm3] 3R_15250317_SNP [dm6]	C	G	2.023e^-4	0.646	INTRON CG42404	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20011300	2R_20011300_SNP [dm3] 2R_24123777_SNP [dm6]	A	G	2.027e^-4	0.646	NON_SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20011301	2R_20011301_SNP [dm3] 2R_24123778_SNP [dm6]	T	A	2.027e^-4	0.646	SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20038760	2L_20038760_SNP [dm3] 2L_20038760_SNP [dm6]	G	A	2.029e^-4	0.646	INTRON sNPF
2R	13198086	2R_13198086_SNP [dm3] 2R_17310581_SNP [dm6]	G	C	2.041e^-4	0.646	INTRON mbl
3L	6640827	3L_6640827_SNP [dm3] 3L_6647727_SNP [dm6]	C	T	2.042e^-4	0.646	INTERGENIC
3R	25761322	3R_25761322_SNP [dm3] 3R_29935600_SNP [dm6]	T	A	2.045e^-4	0.646	UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6392663	3L_6392663_SNP [dm3] 3L_6399563_SNP [dm6]	T	C	2.046e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	6278129	2L_6278129_SNP [dm3] 2L_6278129_SNP [dm6]	A	G	2.052e^-4	0.646	INTRON Ddr
3L	2316519	3L_2316519_SNP [dm3] 3L_2316519_SNP [dm6]	A	T	2.055e^-4	0.646	DOWNSTREAM CR45427 INTERGENIC
2L	12420511	2L_12420511_SNP [dm3] 2L_12420511_SNP [dm6]	C	A	2.055e^-4	0.646	INTRON vir-1
2R	8607328	2R_8607328_SNP [dm3] 2R_12719823_SNP [dm6]	T	G	2.055e^-4	0.646	INTRON CG42663
3R	14327996	3R_14327996_SNP [dm3] 3R_18502274_SNP [dm6]	G	T	2.062e^-4	0.646	INTRON fru
2R	12138512	2R_12138512_DEL [dm3] 2R_16251007_DEL [dm6]	TT	T	2.063e^-4	0.646	INTRON CngA
2L	2766003	2L_2766003_SNP [dm3] 2L_2766003_SNP [dm6]	T	C	2.063e^-4	0.646	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	17491892	3L_17491892_SNP [dm3] 3L_17498792_SNP [dm6]	G	A	2.069e^-4	0.646	INTRON Oatp74D
2R	14107644	2R_14107644_SNP [dm3] 2R_18220139_SNP [dm6]	G	T	2.071e^-4	0.646	INTERGENIC
2L	12660140	2L_12660140_SNP [dm3] 2L_12660140_SNP [dm6]	T	A	2.077e^-4	0.647	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	20021636	2L_20021636_SNP [dm3] 2L_20021636_SNP [dm6]	G	A	2.083e^-4	0.648	INTERGENIC
3L	6291710	3L_6291710_SNP [dm3] 3L_6298610_SNP [dm6]	C	T	2.091e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1514418	3L_1514418_SNP [dm3] 3L_1514418_SNP [dm6]	T	A	2.100e^-4	0.651	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20029601	2L_20029601_SNP [dm3] 2L_20029601_SNP [dm6]	C	T	2.105e^-4	0.651	INTRON sNPF
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	2.105e^-4	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	11564142	X_11564142_SNP [dm3] X_11670109_SNP [dm6]	G	T	2.118e^-4	0.651	INTRON Ptp10D
2L	16008951	2L_16008951_SNP [dm3] 2L_16008951_SNP [dm6]	C	G	2.123e^-4	0.651	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
3L	17690539	3L_17690539_SNP [dm3] 3L_17697439_SNP [dm6]	T	C	2.124e^-4	0.651	INTRON Ccn
2R	20253365	2R_20253365_SNP [dm3] 2R_24365842_SNP [dm6]	T	C	2.129e^-4	0.651	INTRON bs & 1 other	TF binding site mE1_TFBS_cad
2L	1359712	2L_1359712_SNP [dm3] 2L_1359712_SNP [dm6]	T	A	2.132e^-4	0.651	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
2L	1635887	2L_1635887_SNP [dm3] 2L_1635887_SNP [dm6]	C	A	2.132e^-4	0.651	INTERGENIC
X	9734100	X_9734100_SNP [dm3] X_9840067_SNP [dm6]	A	G	2.134e^-4	0.651	INTRON CG32698
3R	10141028	3R_10141028_SNP [dm3] 3R_14315306_SNP [dm6]	A	C	2.136e^-4	0.651	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	19416275	2R_19416275_SNP [dm3] 2R_23528752_SNP [dm6]	A	G	2.146e^-4	0.651	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2L	6299744	2L_6299744_SNP [dm3] 2L_6299744_SNP [dm6]	C	T	2.147e^-4	0.651	INTRON Ddr
3R	20114314	3R_20114314_SNP [dm3] 3R_24288592_SNP [dm6]	T	C	2.147e^-4	0.651	UTR_3_PRIME CG6356 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12459199	2L_12459199_SNP [dm3] 2L_12459199_SNP [dm6]	G	A	2.148e^-4	0.651	DOWNSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4157013	2L_4157013_SNP [dm3] 2L_4157013_SNP [dm6]	A	T	2.151e^-4	0.651	INTERGENIC
2L	4211929	2L_4211929_DEL [dm3] 2L_4211929_DEL [dm6]	TCTGAAGGCATAACCGCAT...	T	2.157e^-4	0.651	INTRON ft
2L	799235	2L_799235_SNP [dm3] 2L_799235_SNP [dm6]	A	T	2.159e^-4	0.651	UPSTREAM CR45259 INTERGENIC
2L	11176608	2L_11176608_SNP [dm3] 2L_11176608_SNP [dm6]	A	G	2.166e^-4	0.651	INTRON Ca-beta
2L	15863687	2L_15863687_SNP [dm3] 2L_15863687_SNP [dm6]	T	C	2.166e^-4	0.651	DOWNSTREAM CR42791 INTERGENIC
3L	16028275	3L_16028275_DEL [dm3] 3L_16035175_DEL [dm6]	TTTA	T	2.181e^-4	0.653	UPSTREAM CG5895 DOWNSTREAM CG42538 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8200715	3L_8200715_DEL [dm3] 3L_8207615_DEL [dm6]	CCATCC	C	2.184e^-4	0.653	INTERGENIC
2L	12471443	2L_12471443_SNP [dm3] 2L_12471443_SNP [dm6]	G	T	2.185e^-4	0.653	INTRON bun
3R	11631464	3R_11631464_SNP [dm3] 3R_15805742_SNP [dm6]	T	G	2.185e^-4	0.653	INTRON alpha-Man-IIb
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	2.191e^-4	0.653	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	2.200e^-4	0.654	INTRON CG14877
2L	17208845	2L_17208845_SNP [dm3] 2L_17208845_SNP [dm6]	G	C	2.204e^-4	0.654	INTRON beat-IIIc
3R	25755128	3R_25755128_SNP [dm3] 3R_29929406_SNP [dm6]	C	A	2.205e^-4	0.654	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2R	9475817	2R_9475817_SNP [dm3] 2R_13588312_SNP [dm6]	C	A	2.206e^-4	0.654	INTRON CG6191 & 1 other
2R	3576606	2R_3576606_SNP [dm3] 2R_7689101_SNP [dm6]	A	T	2.215e^-4	0.654	INTRON CG1399
2L	8371261	2L_8371261_SNP [dm3] 2L_8371261_SNP [dm6]	C	G	2.216e^-4	0.654	UPSTREAM CR45341 INTRON CG17292
2R	8607331	2R_8607331_SNP [dm3] 2R_12719826_SNP [dm6]	A	G	2.219e^-4	0.654	INTRON CG42663
3R	15070595	3R_15070595_SNP [dm3] 3R_19244873_SNP [dm6]	C	A	2.222e^-4	0.654	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad
3L	18099602	3L_18099602_SNP [dm3] 3L_18106502_SNP [dm6]	A	T	2.245e^-4	0.659	UPSTREAM mRpS26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7275770	2R_7275770_SNP [dm3] 2R_11388265_SNP [dm6]	A	G	2.252e^-4	0.659	SYNONYMOUS_CODING CG30022 INTRON sprt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9215685	3L_9215685_SNP [dm3] 3L_9222585_SNP [dm6]	G	A	2.261e^-4	0.659	DOWNSTREAM CR45408 INTERGENIC
2R	15172086	2R_15172086_SNP [dm3] 2R_19284581_SNP [dm6]	G	A	2.264e^-4	0.659	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	1246197	2R_1246197_DEL [dm3] 2R_5358692_DEL [dm6]	GGCAACTGT	CC	2.266e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7376803	2R_7376803_DEL [dm3] 2R_11489298_DEL [dm6]	TT	G	2.267e^-4	0.659	INTRON inv
3R	11945356	3R_11945356_SNP [dm3] 3R_16119634_SNP [dm6]	A	T	2.267e^-4	0.659	INTRON Sb
3R	7122184	3R_7122184_SNP [dm3] 3R_11296462_SNP [dm6]	A	G	2.269e^-4	0.659	INTRON CR31386	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	8255981	3L_8255981_SNP [dm3] 3L_8262881_SNP [dm6]	T	C	2.269e^-4	0.659	INTRON Dscam4
3R	24946496	3R_24946496_SNP [dm3] 3R_29120774_SNP [dm6]	C	A	2.280e^-4	0.659	INTRON yem	TF binding site mE1_TFBS_chinmo
2L	465303	2L_465303_SNP [dm3] 2L_465303_SNP [dm6]	T	C	2.283e^-4	0.659	INTRON CG4297
3L	7033337	3L_7033337_SNP [dm3] 3L_7040237_SNP [dm6]	A	G	2.287e^-4	0.659	INTRON Mp
2L	20027384	2L_20027384_SNP [dm3] 2L_20027384_SNP [dm6]	G	C	2.290e^-4	0.659	UPSTREAM sNPF INTERGENIC
2L	18720474	2L_18720474_SNP [dm3] 2L_18720474_SNP [dm6]	A	C	2.292e^-4	0.659	INTRON CG10348
2L	15200252	2L_15200252_SNP [dm3] 2L_15200252_SNP [dm6]	T	C	2.295e^-4	0.659	UTR_5_PRIME CG4168
2R	15172028	2R_15172028_SNP [dm3] 2R_19284523_SNP [dm6]	C	A	2.297e^-4	0.659	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15172029	2R_15172029_SNP [dm3] 2R_19284524_SNP [dm6]	T	A	2.297e^-4	0.659	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14126005	2R_14126005_SNP [dm3] 2R_18238500_SNP [dm6]	G	A	2.314e^-4	0.663	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20034590	2L_20034590_SNP [dm3] 2L_20034590_SNP [dm6]	G	A	2.319e^-4	0.663	INTRON sNPF
3L	16029539	3L_16029539_SNP [dm3] 3L_16036439_SNP [dm6]	A	G	2.323e^-4	0.663	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
3R	16472571	3R_16472571_SNP [dm3] 3R_20646849_SNP [dm6]	A	G	2.330e^-4	0.663	INTRON GluRIIE
2L	16230032	2L_16230032_SNP [dm3] 2L_16230032_SNP [dm6]	C	T	2.336e^-4	0.663	INTERGENIC
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	2.338e^-4	0.663	INTRON CG44153
2R	12138528	2R_12138528_SNP [dm3] 2R_16251023_SNP [dm6]	C	T	2.343e^-4	0.663	INTRON CngA
3R	16472530	3R_16472530_SNP [dm3] 3R_20646808_SNP [dm6]	A	G	2.344e^-4	0.663	SYNONYMOUS_CODING GluRIIE
X	3374313	X_3374313_SNP [dm3] X_3480280_SNP [dm6]	G	A	2.345e^-4	0.663	SYNONYMOUS_CODING CG10804 INTRON CR44999	TF binding site mE1_TFBS_cad
3L	16028281	3L_16028281_DEL [dm3] 3L_16035181_DEL [dm6]	TA	T	2.352e^-4	0.664	UPSTREAM CG5895 DOWNSTREAM CG42538 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	2.360e^-4	0.665	UPSTREAM ppk27 INTRON CG32264
3L	15941405	3L_15941405_SNP [dm3] 3L_15948305_SNP [dm6]	T	C	2.362e^-4	0.665	INTRON Pka-C3
2L	6849868	2L_6849868_SNP [dm3] 2L_6849868_SNP [dm6]	G	A	2.367e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11078926	3R_11078926_SNP [dm3] 3R_15253204_SNP [dm6]	A	C	2.368e^-4	0.665	SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14944122	3R_14944122_SNP [dm3] 3R_19118400_SNP [dm6]	G	A	2.389e^-4	0.666	INTRON CG6040
2L	9671096	2L_9671096_SNP [dm3] 2L_9671096_SNP [dm6]	G	C	2.390e^-4	0.666	UPSTREAM CR44150 INTERGENIC
2R	7197862	2R_7197862_SNP [dm3] 2R_11310357_SNP [dm6]	G	A	2.390e^-4	0.666	UTR_3_PRIME nompA UPSTREAM CG43114 DOWNSTREAM CG7745
3R	26895330	3R_26895330_SNP [dm3] 3R_31069608_SNP [dm6]	T	C	2.391e^-4	0.666	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2L	4428289	2L_4428289_SNP [dm3] 2L_4428289_SNP [dm6]	G	A	2.393e^-4	0.666	INTRON CG15431
2L	10079962	2L_10079962_SNP [dm3] 2L_10079962_SNP [dm6]	T	A	2.394e^-4	0.666	INTRON CG44153	TF binding site mE1_TFBS_inv
3R	25761459	3R_25761459_SNP [dm3] 3R_29935737_SNP [dm6]	A	G	2.403e^-4	0.667	SPLICE_SITE_REGION eIF2B-alpha UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15172994	2R_15172994_SNP [dm3] 2R_19285489_SNP [dm6]	T	C	2.407e^-4	0.667	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	18097324	3L_18097324_SNP [dm3] 3L_18104224_SNP [dm6]	A	T	2.410e^-4	0.667	INTRON CG13698
3R	14145049	3R_14145049_SNP [dm3] 3R_18319327_SNP [dm6]	T	C	2.417e^-4	0.667	INTRON CG31235
X	15535875	X_15535875_SNP [dm3] X_15641842_SNP [dm6]	A	G	2.426e^-4	0.667	EXON CR44893
2L	3938415	2L_3938415_SNP [dm3] 2L_3938415_SNP [dm6]	T	C	2.426e^-4	0.667	INTRON fred
3R	16472573	3R_16472573_DEL [dm3] 3R_20646851_DEL [dm6]	TGAGTTT	AA	2.427e^-4	0.667	INTRON GluRIIE
3L	7096002	3L_7096002_SNP [dm3] 3L_7102902_SNP [dm6]	G	C	2.434e^-4	0.667	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12157189	2L_12157189_SNP [dm3] 2L_12157189_SNP [dm6]	A	C	2.436e^-4	0.667	INTRON CG31760
2L	3763213	2L_3763213_SNP [dm3] 2L_3763213_SNP [dm6]	C	A	2.436e^-4	0.667	SPLICE_SITE_REGION CG43707 INTRON CG43707
2L	11141622	2L_11141622_SNP [dm3] 2L_11141622_SNP [dm6]	A	T	2.439e^-4	0.667	SYNONYMOUS_CODING Gyc32E
2R	12138541	2R_12138541_SNP [dm3] 2R_16251036_SNP [dm6]	G	T	2.441e^-4	0.667	INTRON CngA
3L	10914209	3L_10914209_SNP [dm3] 3L_10921109_SNP [dm6]	A	G	2.442e^-4	0.667	INTERGENIC
2L	14123755	2L_14123755_SNP [dm3] 2L_14123755_SNP [dm6]	C	T	2.452e^-4	0.667	INTERGENIC
2L	15169728	2L_15169728_INS [dm3] 2L_15169728_INS [dm6]	A	AA	2.452e^-4	0.667	INTRON CG4168
2L	9368002	2L_9368002_SNP [dm3] 2L_9368002_SNP [dm6]	C	T	2.461e^-4	0.667	SYNONYMOUS_CODING CG34181
2R	3228060	2R_3228060_SNP [dm3] 2R_7340555_SNP [dm6]	C	A	2.462e^-4	0.667	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3R	11861597	3R_11861597_INS [dm3] 3R_16035875_INS [dm6]	G	GG	2.466e^-4	0.667	INTRON pnr
3R	20264611	3R_20264611_DEL [dm3] 3R_24438889_DEL [dm6]	GG	G	2.467e^-4	0.667	UPSTREAM CR43455 INTRON nAChRalpha1
3R	14863465	3R_14863465_SNP [dm3] 3R_19037743_SNP [dm6]	G	A	2.469e^-4	0.667	INTRON CG6026
2R	15286009	2R_15286009_SNP [dm3] 2R_19398504_SNP [dm6]	G	A	2.472e^-4	0.667	UTR_3_PRIME hts DOWNSTREAM hts
3R	11860790	3R_11860790_SNP [dm3] 3R_16035068_SNP [dm6]	T	C	2.474e^-4	0.667	UTR_5_PRIME pnr INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_HSA
2L	20029385	2L_20029385_SNP [dm3] 2L_20029385_SNP [dm6]	G	A	2.477e^-4	0.667	INTRON sNPF
2R	15173375	2R_15173375_SNP [dm3] 2R_19285870_SNP [dm6]	G	A	2.483e^-4	0.667	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3R	19339955	3R_19339955_SNP [dm3] 3R_23514233_SNP [dm6]	T	C	2.494e^-4	0.669	UTR_3_PRIME Irk2 INTRON Irk2
2L	3917118	2L_3917118_SNP [dm3] 2L_3917118_SNP [dm6]	G	T	2.499e^-4	0.669	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_cad
2L	12306883	2L_12306883_SNP [dm3] 2L_12306883_SNP [dm6]	C	T	2.501e^-4	0.669	INTRON aret
3L	13639794	3L_13639794_SNP [dm3] 3L_13646694_SNP [dm6]	C	T	2.503e^-4	0.669	INTRON bru-3
2R	15401794	2R_15401794_SNP [dm3] 2R_19514289_SNP [dm6]	A	G	2.509e^-4	0.669	UPSTREAM Ir56d INTERGENIC
3R	22534284	3R_22534284_SNP [dm3] 3R_26708562_SNP [dm6]	T	C	2.509e^-4	0.669	INTRON amon
3L	11177866	3L_11177866_SNP [dm3] 3L_11184766_SNP [dm6]	G	T	2.515e^-4	0.669	INTRON GlcAT-P
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	2.519e^-4	0.669	INTRON Sema-1a
2R	3337920	2R_3337920_SNP [dm3] 2R_7450415_SNP [dm6]	C	G	2.522e^-4	0.669	DOWNSTREAM CG11125 INTRON fa2h	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	2.535e^-4	0.671	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
2R	7376760	2R_7376760_DEL [dm3] 2R_11489255_DEL [dm6]	TT	T	2.536e^-4	0.671	INTRON inv
2L	431494	2L_431494_SNP [dm3] 2L_431494_SNP [dm6]	C	T	2.553e^-4	0.674	UTR_5_PRIME ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13088026	3R_13088026_SNP [dm3] 3R_17262304_SNP [dm6]	T	A	2.573e^-4	0.675	INTRON beat-IIb
2L	2766575	2L_2766575_SNP [dm3] 2L_2766575_SNP [dm6]	G	A	2.579e^-4	0.675	SYNONYMOUS_CODING aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5339869	2R_5339869_SNP [dm3] 2R_9452364_SNP [dm6]	G	A	2.579e^-4	0.675	INTRON Camta
2L	2764202	2L_2764202_SNP [dm3] 2L_2764202_SNP [dm6]	A	C	2.591e^-4	0.675	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
3R	10663528	3R_10663528_SNP [dm3] 3R_14837806_SNP [dm6]	C	T	2.594e^-4	0.675	INTRON btsz
2L	3842253	2L_3842253_SNP [dm3] 2L_3842253_SNP [dm6]	G	A	2.596e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15761534	2L_15761534_SNP [dm3] 2L_15761534_SNP [dm6]	A	T	2.597e^-4	0.675	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3255441	3L_3255441_SNP [dm3] 3L_3255441_SNP [dm6]	T	C	2.608e^-4	0.675	DOWNSTREAM CR43626 INTERGENIC
3R	19339921	3R_19339921_SNP [dm3] 3R_23514199_SNP [dm6]	T	A	2.610e^-4	0.675	INTRON Irk2
3L	1549519	3L_1549519_SNP [dm3] 3L_1549519_SNP [dm6]	A	T	2.611e^-4	0.675	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	1566373	X_1566373_SNP [dm3] X_1672340_SNP [dm6]	C	G	2.612e^-4	0.675	DOWNSTREAM CG32809 INTRON hfw	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8307699	2R_8307699_SNP [dm3] 2R_12420194_SNP [dm6]	T	C	2.614e^-4	0.675	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2R	8309803	2R_8309803_SNP [dm3] 2R_12422298_SNP [dm6]	A	C	2.614e^-4	0.675	UPSTREAM CG8520 INTRON CG8834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13482735	2L_13482735_SNP [dm3] 2L_13482735_SNP [dm6]	C	G	2.620e^-4	0.675	INTRON CG42784
2L	13217316	2L_13217316_SNP [dm3] 2L_13217316_SNP [dm6]	C	G	2.624e^-4	0.675	INTRON CG9426
2L	9651013	2L_9651013_SNP [dm3] 2L_9651013_SNP [dm6]	C	G	2.626e^-4	0.675	SYNONYMOUS_CODING Apoltp
2L	13217331	2L_13217331_SNP [dm3] 2L_13217331_SNP [dm6]	G	A	2.631e^-4	0.675	INTRON CG9426
2L	1625979	2L_1625979_SNP [dm3] 2L_1625979_SNP [dm6]	G	C	2.632e^-4	0.675	EXON CR44603
X	19283330	X_19283330_SNP [dm3] X_19389297_SNP [dm6]	T	G	2.632e^-4	0.675	INTRON kek5
3L	7033105	3L_7033105_SNP [dm3] 3L_7040005_SNP [dm6]	C	T	2.633e^-4	0.675	INTRON Mp
2L	12912442	2L_12912442_SNP [dm3] 2L_12912442_SNP [dm6]	T	A	2.636e^-4	0.675	UPSTREAM ACXC INTERGENIC
3R	8343766	3R_8343766_SNP [dm3] 3R_12518044_SNP [dm6]	G	A	2.636e^-4	0.675	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	19662292	X_19662292_SNP [dm3] X_19768259_SNP [dm6]	G	A	2.640e^-4	0.675	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12157213	2L_12157213_SNP [dm3] 2L_12157213_SNP [dm6]	G	C	2.651e^-4	0.676	INTRON CG31760
2L	8223061	2L_8223061_SNP [dm3] 2L_8223061_SNP [dm6]	G	A	2.657e^-4	0.676	SYNONYMOUS_CODING Pvr
3R	22081158	3R_22081158_SNP [dm3] 3R_26255436_SNP [dm6]	G	A	2.658e^-4	0.676	DOWNSTREAM Ald INTRON Ald
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	2.659e^-4	0.676	INTRON cv-c
2L	15179058	2L_15179058_SNP [dm3] 2L_15179058_SNP [dm6]	C	T	2.660e^-4	0.676	INTRON CG4168
2L	16222467	2L_16222467_SNP [dm3] 2L_16222467_SNP [dm6]	A	T	2.664e^-4	0.676	INTERGENIC
2L	7750481	2L_7750481_SNP [dm3] 2L_7750481_SNP [dm6]	T	A	2.680e^-4	0.678	INTERGENIC
3L	17287060	3L_17287060_SNP [dm3] 3L_17293960_SNP [dm6]	T	G	2.682e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15025608	3L_15025608_SNP [dm3] 3L_15032508_SNP [dm6]	G	A	2.686e^-4	0.678	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8562844	X_8562844_SNP [dm3] X_8668811_SNP [dm6]	T	C	2.687e^-4	0.678	INTERGENIC
3L	11266735	3L_11266735_SNP [dm3] 3L_11273635_SNP [dm6]	C	T	2.689e^-4	0.678	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17032753	3R_17032753_SNP [dm3] 3R_21207031_SNP [dm6]	A	G	2.695e^-4	0.678	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	14432644	2L_14432644_SNP [dm3] 2L_14432644_SNP [dm6]	C	G	2.697e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6136124	3R_6136124_SNP [dm3] 3R_10310402_SNP [dm6]	G	A	2.705e^-4	0.679	SYNONYMOUS_CODING CG6293	TF binding site mE1_TFBS_cad
3R	11751251	3R_11751251_SNP [dm3] 3R_15925529_SNP [dm6]	T	G	2.713e^-4	0.679	UPSTREAM CG34276 INTRON CG4221
2L	3822683	2L_3822683_DEL [dm3] 2L_3822683_DEL [dm6]	AC	T	2.713e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	15547454	X_15547454_SNP [dm3] X_15653421_SNP [dm6]	C	A	2.714e^-4	0.679	INTERGENIC	transposable element FlyBase
3R	25761316	3R_25761316_DEL [dm3] 3R_29935594_DEL [dm6]	TT	T	2.722e^-4	0.68	UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19340075	3R_19340075_SNP [dm3] 3R_23514353_SNP [dm6]	G	T	2.730e^-4	0.68	INTRON Irk2	TF binding site mE1_TFBS_sens
2L	11430053	2L_11430053_SNP [dm3] 2L_11430053_SNP [dm6]	T	A	2.732e^-4	0.68	INTERGENIC
3R	25615412	3R_25615412_SNP [dm3] 3R_29789690_SNP [dm6]	A	C	2.736e^-4	0.68	UTR_5_PRIME kay INTRON kay
2L	966402	2L_966402_SNP [dm3] 2L_966402_SNP [dm6]	T	A	2.736e^-4	0.68	INTERGENIC
3R	14455605	3R_14455605_SNP [dm3] 3R_18629883_SNP [dm6]	G	A	2.740e^-4	0.68	SYNONYMOUS_CODING CG14301 INTRON qin
2L	4226096	2L_4226096_SNP [dm3] 2L_4226096_SNP [dm6]	G	A	2.746e^-4	0.68	SYNONYMOUS_CODING CG3702	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10664770	3R_10664770_SNP [dm3] 3R_14839048_SNP [dm6]	C	T	2.752e^-4	0.681	INTRON btsz
3L	14249072	3L_14249072_SNP [dm3] 3L_14255972_SNP [dm6]	G	C	2.757e^-4	0.681	INTERGENIC
3L	10167274	3L_10167274_SNP [dm3] 3L_10174174_SNP [dm6]	T	C	2.767e^-4	0.683	INTRON dpr10
3R	10141298	3R_10141298_SNP [dm3] 3R_14315576_SNP [dm6]	A	T	2.770e^-4	0.683	SYNONYMOUS_CODING Crz UPSTREAM pr-set7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17670911	3R_17670911_SNP [dm3] 3R_21845189_SNP [dm6]	C	A	2.775e^-4	0.683	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
3L	11643694	3L_11643694_SNP [dm3] 3L_11650594_SNP [dm6]	A	T	2.785e^-4	0.685	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
3R	14901944	3R_14901944_SNP [dm3] 3R_19076222_SNP [dm6]	G	A	2.795e^-4	0.685	INTRON cdi
3R	25398409	3R_25398409_SNP [dm3] 3R_29572687_SNP [dm6]	C	T	2.798e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17208860	2L_17208860_SNP [dm3] 2L_17208860_SNP [dm6]	C	G	2.799e^-4	0.685	INTRON beat-IIIc
2L	14014307	2L_14014307_SNP [dm3] 2L_14014307_SNP [dm6]	A	T	2.809e^-4	0.686	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8200784	3L_8200784_SNP [dm3] 3L_8207684_SNP [dm6]	A	C	2.811e^-4	0.686	INTERGENIC
2R	10947937	2R_10947937_SNP [dm3] 2R_15060432_SNP [dm6]	G	A	2.816e^-4	0.686	INTERGENIC
X	8094272	X_8094272_DEL [dm3] X_8200239_DEL [dm6]	ATATATGTACATA...	A	2.818e^-4	0.686	INTRON sdt
2L	13842391	2L_13842391_SNP [dm3] 2L_13842391_SNP [dm6]	G	T	2.819e^-4	0.686	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	14422814	2L_14422814_SNP [dm3] 2L_14422814_SNP [dm6]	C	T	2.833e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11696553	3L_11696553_SNP [dm3] 3L_11703453_SNP [dm6]	G	A	2.836e^-4	0.687	INTRON CG11658
2R	12811315	2R_12811315_SNP [dm3] 2R_16923810_SNP [dm6]	T	A	2.841e^-4	0.687	UPSTREAM Pkc53E INTERGENIC
3L	1679990	3L_1679990_SNP [dm3] 3L_1679990_SNP [dm6]	A	T	2.842e^-4	0.687	INTRON CG7991
2L	14670756	2L_14670756_SNP [dm3] 2L_14670756_SNP [dm6]	G	A	2.842e^-4	0.687	INTRON osp
2L	15310706	2L_15310706_SNP [dm3] 2L_15310706_SNP [dm6]	C	T	2.845e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	1246085	2R_1246085_SNP [dm3] 2R_5358580_SNP [dm6]	G	A	2.856e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	17483689	3L_17483689_SNP [dm3] 3L_17490589_SNP [dm6]	A	C	2.865e^-4	0.688	INTRON Oatp74D
3R	26566519	3R_26566519_SNP [dm3] 3R_30740797_SNP [dm6]	C	T	2.867e^-4	0.688	INTERGENIC
2L	7964912	2L_7964912_SNP [dm3] 2L_7964912_SNP [dm6]	G	C	2.874e^-4	0.688	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20113849	3R_20113849_SNP [dm3] 3R_24288127_SNP [dm6]	C	T	2.882e^-4	0.688	SYNONYMOUS_CODING CG6356 DOWNSTREAM CG34290
3L	18090947	3L_18090947_SNP [dm3] 3L_18097847_SNP [dm6]	C	T	2.883e^-4	0.688	INTRON CG13698
2R	14313837	2R_14313837_SNP [dm3] 2R_18426332_SNP [dm6]	C	T	2.888e^-4	0.688	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14465636	3R_14465636_SNP [dm3] 3R_18639914_SNP [dm6]	C	T	2.893e^-4	0.688	INTRON qin & 1 other
3R	20341109	3R_20341109_SNP [dm3] 3R_24515387_SNP [dm6]	C	A	2.897e^-4	0.688	UTR_5_PRIME CG13617 UPSTREAM CG13617 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10273673	3R_10273673_SNP [dm3] 3R_14447951_SNP [dm6]	T	C	2.898e^-4	0.688	INTRON cv-c
2L	11430079	2L_11430079_SNP [dm3] 2L_11430079_SNP [dm6]	T	A	2.900e^-4	0.688	INTERGENIC
3L	6820480	3L_6820480_SNP [dm3] 3L_6827380_SNP [dm6]	G	C	2.920e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15642954	2L_15642954_INS [dm3] 2L_15642954_INS [dm6]	A	AA	2.929e^-4	0.688	INTERGENIC
3R	10659191	3R_10659191_SNP [dm3] 3R_14833469_SNP [dm6]	G	C	2.936e^-4	0.688	INTRON btsz
3R	7063714	3R_7063714_SNP [dm3] 3R_11237992_SNP [dm6]	G	C	2.938e^-4	0.688	DOWNSTREAM CG31441 INTRON CG31388	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24947353	3R_24947353_SNP [dm3] 3R_29121631_SNP [dm6]	G	T	2.939e^-4	0.688	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7033334	3L_7033334_SNP [dm3] 3L_7040234_SNP [dm6]	T	C	2.941e^-4	0.688	INTRON Mp
2L	3856033	2L_3856033_SNP [dm3] 2L_3856033_SNP [dm6]	C	A	2.943e^-4	0.688	DOWNSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9956632	2R_9956632_SNP [dm3] 2R_14069127_SNP [dm6]	T	C	2.944e^-4	0.688	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9956640	2R_9956640_SNP [dm3] 2R_14069135_SNP [dm6]	T	A	2.944e^-4	0.688	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1645507	2L_1645507_INS [dm3] 2L_1645507_INS [dm6]	C	CC	2.945e^-4	0.688	INTERGENIC
3R	8476955	3R_8476955_SNP [dm3] 3R_12651233_SNP [dm6]	C	A	2.947e^-4	0.688	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
2L	17685078	2L_17685078_DEL [dm3] 2L_17685078_DEL [dm6]	TAGTTTAAATTTATTT...	T	2.948e^-4	0.688	INTRON CadN
2L	7969633	2L_7969633_SNP [dm3] 2L_7969633_SNP [dm6]	T	A	2.954e^-4	0.688	INTRON Snoo
3R	20119116	3R_20119116_SNP [dm3] 3R_24293394_SNP [dm6]	A	G	2.954e^-4	0.688	UTR_3_PRIME CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_sens
2R	7474290	2R_7474290_SNP [dm3] 2R_11586785_SNP [dm6]	G	T	2.959e^-4	0.688	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_sens
2R	3343561	2R_3343561_SNP [dm3] 2R_7456056_SNP [dm6]	A	C	2.962e^-4	0.688	SYNONYMOUS_CODING Inos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15553812	2L_15553812_INS [dm3] 2L_15553812_INS [dm6]	T	TG	2.964e^-4	0.688	INTRON kek3
2L	15054111	2L_15054111_INS [dm3] 2L_15054111_INS [dm6]	T	TT	2.967e^-4	0.688	INTRON ck	regulatory region REDfly_CRMs
3R	5693257	3R_5693257_SNP [dm3] 3R_9867535_SNP [dm6]	G	C	2.969e^-4	0.688	INTRON Teh1
2L	13841463	2L_13841463_SNP [dm3] 2L_13841463_SNP [dm6]	G	A	2.971e^-4	0.688	NON_SYNONYMOUS_CODING CG33307 INTRON CenG1A
2L	14501241	2L_14501241_SNP [dm3] 2L_14501241_SNP [dm6]	G	A	2.973e^-4	0.688	INTERGENIC
3R	7751802	3R_7751802_SNP [dm3] 3R_11926080_SNP [dm6]	A	T	2.974e^-4	0.688	INTRON Cad87A
3L	13177315	3L_13177315_SNP [dm3] 3L_13184215_SNP [dm6]	A	G	2.974e^-4	0.688	INTERGENIC
2L	6299750	2L_6299750_SNP [dm3] 2L_6299750_SNP [dm6]	G	A	2.979e^-4	0.688	INTRON Ddr
3R	11689824	3R_11689824_MNP [dm3] 3R_15864102_MNP [dm6]	GGGAA	TTATT	2.992e^-4	0.689	INTRON CG31183
2R	7446965	2R_7446965_SNP [dm3] 2R_11559460_SNP [dm6]	T	A	2.993e^-4	0.689	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14441456	3L_14441456_SNP [dm3] 3L_14448356_SNP [dm6]	G	T	2.995e^-4	0.689	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	7968180	2L_7968180_SNP [dm3] 2L_7968180_SNP [dm6]	A	C	3.003e^-4	0.69	INTRON Snoo
3R	7747776	3R_7747776_SNP [dm3] 3R_11922054_SNP [dm6]	G	A	3.008e^-4	0.69	INTRON Cad87A
3L	7094690	3L_7094690_SNP [dm3] 3L_7101590_SNP [dm6]	T	C	3.015e^-4	0.69	INTRON form3
2L	8607588	2L_8607588_SNP [dm3] 2L_8607588_SNP [dm6]	C	T	3.025e^-4	0.69	INTRON Sema-1a
2R	21069654	2R_21069654_SNP [dm3] 2R_25182131_SNP [dm6]	T	G	3.030e^-4	0.69	INTERGENIC
3R	6968593	3R_6968593_SNP [dm3] 3R_11142871_SNP [dm6]	G	A	3.036e^-4	0.69	INTERGENIC
X	2373140	X_2373140_SNP [dm3] X_2479107_SNP [dm6]	G	A	3.047e^-4	0.69	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3R	20415634	3R_20415634_SNP [dm3] 3R_24589912_SNP [dm6]	G	A	3.048e^-4	0.69	INTRON mld	TF binding site BDTNP1_TFBS_dl
3R	24946538	3R_24946538_SNP [dm3] 3R_29120816_SNP [dm6]	A	T	3.048e^-4	0.69	NON_SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
2L	14014232	2L_14014232_SNP [dm3] 2L_14014232_SNP [dm6]	G	T	3.054e^-4	0.69	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	17542768	3L_17542768_SNP [dm3] 3L_17549668_SNP [dm6]	C	T	3.054e^-4	0.69	UPSTREAM CG7542 & 1 other INTERGENIC
3R	19464883	3R_19464883_SNP [dm3] 3R_23639161_SNP [dm6]	A	G	3.062e^-4	0.69	INTRON CG31145	TF binding site mE1_TFBS_inv
3R	22328023	3R_22328023_SNP [dm3] 3R_26502301_SNP [dm6]	T	A	3.067e^-4	0.69	INTRON plum
3R	20902119	3R_20902119_SNP [dm3] 3R_25076397_SNP [dm6]	T	C	3.069e^-4	0.69	DOWNSTREAM CG11920 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	3.072e^-4	0.69	SYNONYMOUS_CODING GluRIIE
2R	13075654	2R_13075654_SNP [dm3] 2R_17188149_SNP [dm6]	T	A	3.079e^-4	0.69	UPSTREAM CR44388 DOWNSTREAM CR44389 INTERGENIC
2L	13371389	2L_13371389_SNP [dm3] 2L_13371389_SNP [dm6]	A	T	3.080e^-4	0.69	UPSTREAM CG9306 DOWNSTREAM CG9305 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2764248	2L_2764248_DEL [dm3] 2L_2764248_DEL [dm6]	AA	A	3.086e^-4	0.69	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
2R	3345019	2R_3345019_SNP [dm3] 2R_7457514_SNP [dm6]	T	G	3.087e^-4	0.69	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12454665	X_12454665_SNP [dm3] X_12560632_SNP [dm6]	G	C	3.090e^-4	0.69	INTRON CG43921	TF binding site mE1_TFBS_inv
2R	7944570	2R_7944570_SNP [dm3] 2R_12057065_SNP [dm6]	G	T	3.091e^-4	0.69	DOWNSTREAM CG44314 INTRON Drep-3
2R	12811313	2R_12811313_SNP [dm3] 2R_16923808_SNP [dm6]	A	G	3.094e^-4	0.69	UPSTREAM Pkc53E INTERGENIC
3R	15002002	3R_15002002_SNP [dm3] 3R_19176280_SNP [dm6]	A	T	3.098e^-4	0.69	UPSTREAM CG14282 INTERGENIC
2R	1822139	2R_1822139_SNP [dm3] 2R_5934634_SNP [dm6]	A	G	3.099e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10141301	3R_10141301_SNP [dm3] 3R_14315579_SNP [dm6]	C	T	3.100e^-4	0.69	SYNONYMOUS_CODING Crz UPSTREAM pr-set7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1347816	2R_1347816_SNP [dm3] 2R_5460311_SNP [dm6]	C	A	3.103e^-4	0.69	INTERGENIC	transposable element FlyBase
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	3.108e^-4	0.69	INTRON CG32432
2R	3344958	2R_3344958_INS [dm3] 2R_7457453_INS [dm6]	A	ATGATGATGATTGC...	3.115e^-4	0.69	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	672236	3L_672236_SNP [dm3] 3L_672236_SNP [dm6]	T	C	3.115e^-4	0.69	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14309720	3R_14309720_SNP [dm3] 3R_18483998_SNP [dm6]	C	A	3.117e^-4	0.69	INTRON fru
3R	11238722	3R_11238722_SNP [dm3] 3R_15413000_SNP [dm6]	T	C	3.118e^-4	0.69	SYNONYMOUS_CODING Atx2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15734454	2L_15734454_SNP [dm3] 2L_15734454_SNP [dm6]	T	C	3.137e^-4	0.69	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	11430066	2L_11430066_SNP [dm3] 2L_11430066_SNP [dm6]	T	C	3.139e^-4	0.69	INTERGENIC
2L	1627623	2L_1627623_SNP [dm3] 2L_1627623_SNP [dm6]	T	C	3.139e^-4	0.69	INTERGENIC
2L	398834	2L_398834_SNP [dm3] 2L_398834_SNP [dm6]	C	T	3.139e^-4	0.69	SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
2L	16087163	2L_16087163_SNP [dm3] 2L_16087163_SNP [dm6]	G	A	3.142e^-4	0.69	INTERGENIC
2L	2767296	2L_2767296_SNP [dm3] 2L_2767296_SNP [dm6]	A	C	3.143e^-4	0.69	UTR_3_PRIME Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	2796679	3L_2796679_SNP [dm3] 3L_2796679_SNP [dm6]	C	T	3.143e^-4	0.69	SPLICE_SITE_ACCEPTOR CG43444 SPLICE_SITE_REGION CG43444 SYNONYMOUS_CODING CG43444 UTR_5_PRIME CG43444 INTRON CG43444	TF binding site mE1_TFBS_inv
3L	5073149	3L_5073149_SNP [dm3] 3L_5073149_SNP [dm6]	T	C	3.145e^-4	0.69	INTRON Con
2L	2761228	2L_2761228_SNP [dm3] 2L_2761228_SNP [dm6]	C	A	3.149e^-4	0.69	SYNONYMOUS_CODING Trn-SR	TF binding site mE1_TFBS_cad
2R	1321497	2R_1321497_SNP [dm3] 2R_5433992_SNP [dm6]	C	T	3.152e^-4	0.69	INTRON laccase2
2L	11430049	2L_11430049_SNP [dm3] 2L_11430049_SNP [dm6]	T	A	3.159e^-4	0.69	INTERGENIC
3L	9504907	3L_9504907_SNP [dm3] 3L_9511807_SNP [dm6]	T	C	3.161e^-4	0.69	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	18256181	2L_18256181_SNP [dm3] 2L_18256181_SNP [dm6]	G	T	3.165e^-4	0.69	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
2R	6141574	2R_6141574_SNP [dm3] 2R_10254069_SNP [dm6]	A	T	3.169e^-4	0.69	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	8690979	X_8690979_DEL [dm3] X_8796946_DEL [dm6]	CA	C	3.179e^-4	0.69	INTRON Lim1
3R	11538590	3R_11538590_SNP [dm3] 3R_15712868_SNP [dm6]	G	A	3.180e^-4	0.69	INTERGENIC	TF binding site mE1_TFBS_inv
X	19544710	X_19544710_SNP [dm3] X_19650677_SNP [dm6]	G	A	3.182e^-4	0.69	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	18908276	X_18908276_SNP [dm3] X_19014243_SNP [dm6]	G	T	3.184e^-4	0.69	INTRON CG43759
3R	26565903	3R_26565903_SNP [dm3] 3R_30740181_SNP [dm6]	G	A	3.184e^-4	0.69	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18099710	3L_18099710_DEL [dm3] 3L_18106610_DEL [dm6]	TT	T	3.186e^-4	0.69	UTR_5_PRIME mRpS26 UPSTREAM CG13698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16030202	3L_16030202_SNP [dm3] 3L_16037102_SNP [dm6]	C	A	3.196e^-4	0.691	NON_SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	9034851	3L_9034851_SNP [dm3] 3L_9041751_SNP [dm6]	T	A	3.203e^-4	0.691	UPSTREAM Doc1 INTRON Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12447512	3R_12447512_SNP [dm3] 3R_16621790_SNP [dm6]	G	C	3.204e^-4	0.691	NON_SYNONYMOUS_CODING CG14893 DOWNSTREAM CG14905
2R	8282022	2R_8282022_SNP [dm3] 2R_12394517_SNP [dm6]	G	T	3.205e^-4	0.691	NON_SYNONYMOUS_CODING Or49a SPLICE_SITE_REGION Or49a UPSTREAM CG30048
3L	6822292	3L_6822292_SNP [dm3] 3L_6829192_SNP [dm6]	A	T	3.208e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13182386	X_13182386_SNP [dm3] X_13288353_SNP [dm6]	C	T	3.212e^-4	0.691	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	3.214e^-4	0.691	INTRON 4EHP
2L	15766178	2L_15766178_SNP [dm3] 2L_15766178_SNP [dm6]	A	T	3.220e^-4	0.691	UTR_3_PRIME CG3793 & 1 other DOWNSTREAM wek & 1 other
2L	11430043	2L_11430043_SNP [dm3] 2L_11430043_SNP [dm6]	T	C	3.224e^-4	0.691	INTERGENIC
2R	14107442	2R_14107442_SNP [dm3] 2R_18219937_SNP [dm6]	A	G	3.242e^-4	0.693	INTERGENIC
X	7231254	X_7231254_SNP [dm3] X_7337221_SNP [dm6]	T	C	3.245e^-4	0.693	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10141006	3R_10141006_DEL [dm3] 3R_14315284_DEL [dm6]	CCTAC	C	3.249e^-4	0.693	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	14309826	3R_14309826_SNP [dm3] 3R_18484104_SNP [dm6]	G	A	3.249e^-4	0.693	INTRON fru
3R	24946504	3R_24946504_DEL [dm3] 3R_29120782_DEL [dm6]	GT	C	3.258e^-4	0.694	INTRON yem	TF binding site mE1_TFBS_chinmo
2L	10887690	2L_10887690_SNP [dm3] 2L_10887690_SNP [dm6]	T	A	3.268e^-4	0.694	UTR_3_PRIME CG14071 DOWNSTREAM CR44490 & 1 other	TF binding site mE1_TFBS_inv
3R	22535345	3R_22535345_SNP [dm3] 3R_26709623_SNP [dm6]	G	T	3.276e^-4	0.694	INTRON amon
3R	11689837	3R_11689837_SNP [dm3] 3R_15864115_SNP [dm6]	G	C	3.277e^-4	0.694	INTRON CG31183
3R	5728975	3R_5728975_SNP [dm3] 3R_9903253_SNP [dm6]	C	T	3.280e^-4	0.694	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3L	8951407	3L_8951407_SNP [dm3] 3L_8958307_SNP [dm6]	G	A	3.287e^-4	0.694	UPSTREAM CG13313 DOWNSTREAM mRpL12 INTERGENIC
3R	10995027	3R_10995027_SNP [dm3] 3R_15169305_SNP [dm6]	A	G	3.293e^-4	0.694	INTRON Gyc88E
2L	2389228	2L_2389228_SNP [dm3] 2L_2389228_SNP [dm6]	A	C	3.296e^-4	0.694	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9659097	2L_9659097_SNP [dm3] 2L_9659097_SNP [dm6]	G	T	3.299e^-4	0.694	INTERGENIC
3R	14899338	3R_14899338_SNP [dm3] 3R_19073616_SNP [dm6]	G	T	3.301e^-4	0.694	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	463682	3L_463682_SNP [dm3] 3L_463682_SNP [dm6]	A	T	3.302e^-4	0.694	INTRON klar
3R	16472513	3R_16472513_SNP [dm3] 3R_20646791_SNP [dm6]	A	G	3.312e^-4	0.694	SYNONYMOUS_CODING GluRIIE
3L	18091803	3L_18091803_SNP [dm3] 3L_18098703_SNP [dm6]	A	T	3.322e^-4	0.694	INTRON CG13698
3L	2984310	3L_2984310_SNP [dm3] 3L_2984310_SNP [dm6]	A	C	3.327e^-4	0.694	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11343774	2L_11343774_SNP [dm3] 2L_11343774_SNP [dm6]	G	T	3.331e^-4	0.694	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	449125	2L_449125_SNP [dm3] 2L_449125_SNP [dm6]	T	A	3.331e^-4	0.694	NON_SYNONYMOUS_CODING crq DOWNSTREAM ex
X	19370225	X_19370225_SNP [dm3] X_19476192_SNP [dm6]	C	A	3.338e^-4	0.694	NON_SYNONYMOUS_CODING CG32533 DOWNSTREAM CG12200
2L	20036725	2L_20036725_SNP [dm3] 2L_20036725_SNP [dm6]	C	A	3.338e^-4	0.694	INTRON sNPF
3R	18845525	3R_18845525_DEL [dm3] 3R_23019803_DEL [dm6]	GGT	G	3.339e^-4	0.694	INTERGENIC
3R	25396049	3R_25396049_SNP [dm3] 3R_29570327_SNP [dm6]	T	G	3.341e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	438326	2L_438326_SNP [dm3] 2L_438326_SNP [dm6]	T	A	3.343e^-4	0.694	INTRON ex
X	12670991	X_12670991_SNP [dm3] X_12776958_SNP [dm6]	G	A	3.352e^-4	0.694	INTRON CG32647
2R	9203412	2R_9203412_SNP [dm3] 2R_13315907_SNP [dm6]	T	C	3.353e^-4	0.694	INTERGENIC
3L	7584973	3L_7584973_SNP [dm3] 3L_7591873_SNP [dm6]	G	A	3.354e^-4	0.694	UPSTREAM CG7716 INTERGENIC
2L	17208870	2L_17208870_SNP [dm3] 2L_17208870_SNP [dm6]	C	G	3.354e^-4	0.694	INTRON beat-IIIc
2L	4934886	2L_4934886_SNP [dm3] 2L_4934886_SNP [dm6]	G	A	3.360e^-4	0.694	SYNONYMOUS_CODING hoe2
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	3.362e^-4	0.694	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12138539	2R_12138539_SNP [dm3] 2R_16251034_SNP [dm6]	T	G	3.364e^-4	0.694	INTRON CngA
3R	13823760	3R_13823760_SNP [dm3] 3R_17998038_SNP [dm6]	C	G	3.365e^-4	0.694	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20114003	3R_20114003_SNP [dm3] 3R_24288281_SNP [dm6]	G	C	3.366e^-4	0.694	UTR_3_PRIME CG6356 DOWNSTREAM CG34290	TF binding site mE1_TFBS_sbb
2R	3344532	2R_3344532_SNP [dm3] 2R_7457027_SNP [dm6]	A	G	3.366e^-4	0.694	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	2825399	3L_2825399_SNP [dm3] 3L_2825399_SNP [dm6]	G	A	3.374e^-4	0.694	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9368455	2L_9368455_SNP [dm3] 2L_9368455_SNP [dm6]	G	A	3.380e^-4	0.694	DOWNSTREAM CG34181 INTERGENIC
2L	6851363	2L_6851363_SNP [dm3] 2L_6851363_SNP [dm6]	A	T	3.381e^-4	0.694	UPSTREAM Rca1 INTERGENIC
2L	13842389	2L_13842389_SNP [dm3] 2L_13842389_SNP [dm6]	T	G	3.384e^-4	0.694	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2R	10942366	2R_10942366_SNP [dm3] 2R_15054861_SNP [dm6]	A	G	3.390e^-4	0.694	DOWNSTREAM CG33467 INTERGENIC
2L	8997155	2L_8997155_SNP [dm3] 2L_8997155_SNP [dm6]	A	G	3.392e^-4	0.694	UPSTREAM CG18661 INTRON alien	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	3.395e^-4	0.694	INTERGENIC
3R	14299108	3R_14299108_DEL [dm3] 3R_18473386_DEL [dm6]	CC	C	3.398e^-4	0.694	INTRON fru
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	3.404e^-4	0.694	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24880187	3R_24880187_SNP [dm3] 3R_29054465_SNP [dm6]	C	G	3.416e^-4	0.694	UTR_5_PRIME CG11843 UPSTREAM CG11843 DOWNSTREAM CG11842	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7737381	3R_7737381_SNP [dm3] 3R_11911659_SNP [dm6]	C	G	3.419e^-4	0.694	INTRON Cad87A
2R	17901586	2R_17901586_DEL [dm3] 2R_22014081_DEL [dm6]	ATGACA	A	3.423e^-4	0.694	INTRON CG34370
X	17328613	X_17328613_INS [dm3] X_17434580_INS [dm6]	A	AA	3.424e^-4	0.694	INTRON CG12994
3R	21598184	3R_21598184_SNP [dm3] 3R_25772462_SNP [dm6]	C	A	3.427e^-4	0.694	DOWNSTREAM CG17198 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2R	13772343	2R_13772343_SNP [dm3] 2R_17884838_SNP [dm6]	T	G	3.428e^-4	0.694	INTRON Elk
2L	13989755	2L_13989755_SNP [dm3] 2L_13989755_SNP [dm6]	T	C	3.432e^-4	0.694	INTRON rk
3R	7851785	3R_7851785_SNP [dm3] 3R_12026063_SNP [dm6]	G	C	3.433e^-4	0.694	INTERGENIC
2L	11430020	2L_11430020_SNP [dm3] 2L_11430020_SNP [dm6]	C	G	3.433e^-4	0.694	INTERGENIC
2R	14536889	2R_14536889_SNP [dm3] 2R_18649384_SNP [dm6]	A	T	3.449e^-4	0.695	INTRON SP2637
3R	21674204	3R_21674204_SNP [dm3] 3R_25848482_SNP [dm6]	A	G	3.449e^-4	0.695	UPSTREAM CR45656 DOWNSTREAM CR45657 INTERGENIC
3L	15042229	3L_15042229_DEL [dm3] 3L_15049129_DEL [dm6]	AA	A	3.450e^-4	0.695	DOWNSTREAM CG43678 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
2L	13390919	2L_13390919_SNP [dm3] 2L_13390919_SNP [dm6]	T	C	3.453e^-4	0.695	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16659982	3L_16659982_SNP [dm3] 3L_16666882_SNP [dm6]	A	G	3.459e^-4	0.695	INTRON Galphaf	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18061768	X_18061768_SNP [dm3] X_18167735_SNP [dm6]	C	A	3.462e^-4	0.695	INTRON Frq1
2L	632167	2L_632167_SNP [dm3] 2L_632167_SNP [dm6]	C	T	3.476e^-4	0.695	INTERGENIC
3L	3818322	3L_3818322_SNP [dm3] 3L_3818322_SNP [dm6]	C	T	3.478e^-4	0.695	UTR_3_PRIME Scsalpha UPSTREAM enc DOWNSTREAM Scsalpha	TF binding site BDTNP1_TFBS_dl
2R	7438838	2R_7438838_SNP [dm3] 2R_11551333_SNP [dm6]	T	G	3.478e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20921253	3R_20921253_SNP [dm3] 3R_25095531_SNP [dm6]	T	C	3.480e^-4	0.695	SYNONYMOUS_CODING fd96Cb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12138527	2R_12138527_SNP [dm3] 2R_16251022_SNP [dm6]	A	C	3.481e^-4	0.695	INTRON CngA
2L	12157032	2L_12157032_SNP [dm3] 2L_12157032_SNP [dm6]	A	G	3.483e^-4	0.695	INTRON CG31760
3R	25732008	3R_25732008_SNP [dm3] 3R_29906286_SNP [dm6]	G	A	3.488e^-4	0.695	SYNONYMOUS_CODING CG15515
3L	18887336	3L_18887336_SNP [dm3] 3L_18894236_SNP [dm6]	A	C	3.501e^-4	0.695	DOWNSTREAM NijB INTRON CG3902
2L	1625977	2L_1625977_SNP [dm3] 2L_1625977_SNP [dm6]	G	T	3.502e^-4	0.695	EXON CR44603
3R	23608716	3R_23608716_SNP [dm3] 3R_27782994_SNP [dm6]	G	T	3.505e^-4	0.695	INTRON CG34353
3L	17462973	3L_17462973_SNP [dm3] 3L_17469873_SNP [dm6]	T	C	3.506e^-4	0.695	UPSTREAM CG7589 INTERGENIC
X	7649575	X_7649575_SNP [dm3] X_7755542_SNP [dm6]	C	T	3.510e^-4	0.695	INTERGENIC
2R	10949174	2R_10949174_SNP [dm3] 2R_15061669_SNP [dm6]	G	A	3.512e^-4	0.695	INTERGENIC
2R	20229155	2R_20229155_SNP [dm3] 2R_24341632_SNP [dm6]	T	C	3.520e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9545597	3L_9545597_SNP [dm3] 3L_9552497_SNP [dm6]	C	A	3.522e^-4	0.695	INTRON CG42673
2R	8294915	2R_8294915_SNP [dm3] 2R_12407410_SNP [dm6]	C	A	3.529e^-4	0.695	UPSTREAM Cpr49Ag DOWNSTREAM Cpr49Af INTERGENIC
2L	11345361	2L_11345361_SNP [dm3] 2L_11345361_SNP [dm6]	T	C	3.531e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	2765894	2L_2765894_SNP [dm3] 2L_2765894_SNP [dm6]	T	C	3.543e^-4	0.695	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	3264542	2R_3264542_SNP [dm3] 2R_7377037_SNP [dm6]	A	G	3.544e^-4	0.695	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13270868	X_13270868_SNP [dm3] X_13376835_SNP [dm6]	C	G	3.552e^-4	0.695	INTRON CG1640
X	11199967	X_11199967_SNP [dm3] X_11305934_SNP [dm6]	T	C	3.553e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7185139	3R_7185139_SNP [dm3] 3R_11359417_SNP [dm6]	C	G	3.553e^-4	0.695	INTRON pros
3L	6625632	3L_6625632_SNP [dm3] 3L_6632532_SNP [dm6]	A	C	3.557e^-4	0.695	INTRON GluRIA
3R	7989279	3R_7989279_SNP [dm3] 3R_12163557_SNP [dm6]	T	G	3.560e^-4	0.695	SPLICE_SITE_ACCEPTOR Cpn NON_SYNONYMOUS_CODING Cpn INTRON Cpn
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	3.561e^-4	0.695	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4420360	2L_4420360_SNP [dm3] 2L_4420360_SNP [dm6]	T	A	3.563e^-4	0.695	INTRON CG15431
2L	9369376	2L_9369376_SNP [dm3] 2L_9369376_SNP [dm6]	T	C	3.565e^-4	0.695	DOWNSTREAM CG34181 & 1 other INTERGENIC
2R	19550991	2R_19550991_SNP [dm3] 2R_23663468_SNP [dm6]	G	A	3.565e^-4	0.695	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12450235	2R_12450235_SNP [dm3] 2R_16562730_SNP [dm6]	C	G	3.571e^-4	0.695	INTRON DAT
2L	8223281	2L_8223281_SNP [dm3] 2L_8223281_SNP [dm6]	G	C	3.573e^-4	0.695	SYNONYMOUS_CODING Pvr
3L	9522932	3L_9522932_SNP [dm3] 3L_9529832_SNP [dm6]	A	G	3.590e^-4	0.698	UTR_5_PRIME Or67a
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	3.600e^-4	0.698	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	18878750	3L_18878750_SNP [dm3] 3L_18885650_SNP [dm6]	C	T	3.603e^-4	0.698	UPSTREAM CG3961 INTRON CG3961
2R	19109767	2R_19109767_SNP [dm3] 2R_23222244_SNP [dm6]	A	G	3.605e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15012601	2L_15012601_SNP [dm3] 2L_15012601_SNP [dm6]	C	T	3.608e^-4	0.698	DOWNSTREAM l_2_35Bd EXON CR43856	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3904064	2L_3904064_SNP [dm3] 2L_3904064_SNP [dm6]	T	C	3.610e^-4	0.698	UTR_3_PRIME fred
2R	10674354	2R_10674354_SNP [dm3] 2R_14786849_SNP [dm6]	A	G	3.612e^-4	0.698	INTRON kn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14645751	3L_14645751_SNP [dm3] 3L_14652651_SNP [dm6]	T	A	3.620e^-4	0.698	INTRON dlp
2L	9229790	2L_9229790_SNP [dm3] 2L_9229790_SNP [dm6]	C	T	3.622e^-4	0.698	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
X	8221362	X_8221362_DEL [dm3] X_8327329_DEL [dm6]	GTTTCTTTTTGCAATATGTA...	C	3.625e^-4	0.698	INTRON nAChRalpha3
2L	10169182	2L_10169182_SNP [dm3] 2L_10169182_SNP [dm6]	T	G	3.633e^-4	0.698	INTRON CG44153
3R	1754625	3R_1754625_SNP [dm3] 3R_5928903_SNP [dm6]	A	T	3.634e^-4	0.698	INTRON CG34113
2L	3954887	2L_3954887_SNP [dm3] 2L_3954887_SNP [dm6]	C	T	3.634e^-4	0.698	INTRON fred
3R	10663714	3R_10663714_SNP [dm3] 3R_14837992_SNP [dm6]	G	A	3.651e^-4	0.7	INTRON btsz
3R	14773944	3R_14773944_SNP [dm3] 3R_18948222_SNP [dm6]	A	G	3.653e^-4	0.7	INTRON CG42613
3L	9504908	3L_9504908_SNP [dm3] 3L_9511808_SNP [dm6]	C	A	3.656e^-4	0.7	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
X	8898591	X_8898591_SNP [dm3] X_9004558_SNP [dm6]	C	T	3.674e^-4	0.7	INTRON rdgA & 1 other
3L	5955639	3L_5955639_SNP [dm3] 3L_5962539_SNP [dm6]	C	T	3.675e^-4	0.7	INTERGENIC
X	8631631	X_8631631_SNP [dm3] X_8737598_SNP [dm6]	C	T	3.676e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	1605755	2L_1605755_SNP [dm3] 2L_1605755_SNP [dm6]	C	T	3.679e^-4	0.7	INTRON CG31935 & 1 other
3R	11239061	3R_11239061_SNP [dm3] 3R_15413339_SNP [dm6]	G	A	3.681e^-4	0.7	SYNONYMOUS_CODING Atx2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	448937	2L_448937_SNP [dm3] 2L_448937_SNP [dm6]	C	G	3.686e^-4	0.7	UTR_3_PRIME crq DOWNSTREAM ex
3R	23372544	3R_23372544_SNP [dm3] 3R_27546822_SNP [dm6]	C	A	3.686e^-4	0.7	SYNONYMOUS_CODING Gr98d DOWNSTREAM Gr98c & 1 other
2R	8410528	2R_8410528_SNP [dm3] 2R_12523023_SNP [dm6]	C	T	3.689e^-4	0.7	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2R	3264527	2R_3264527_SNP [dm3] 2R_7377022_SNP [dm6]	C	T	3.693e^-4	0.7	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6274008	2L_6274008_SNP [dm3] 2L_6274008_SNP [dm6]	G	A	3.697e^-4	0.7	INTRON Ddr
2L	20814045	2L_20814045_INS [dm3] 2L_20814045_INS [dm6]	A	AA	3.697e^-4	0.7	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3L	16030332	3L_16030332_SNP [dm3] 3L_16037232_SNP [dm6]	C	A	3.701e^-4	0.7	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	2811918	2R_2811918_SNP [dm3] 2R_6924413_SNP [dm6]	C	A	3.708e^-4	0.7	NON_SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	15007454	2L_15007454_SNP [dm3] 2L_15007454_SNP [dm6]	A	T	3.714e^-4	0.7	UPSTREAM NC2beta & 1 other DOWNSTREAM dyn-p25 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	16389442	2L_16389442_SNP [dm3] 2L_16389442_SNP [dm6]	C	A	3.717e^-4	0.7	INTERGENIC
2R	19686568	2R_19686568_SNP [dm3] 2R_23799045_SNP [dm6]	A	T	3.719e^-4	0.7	UPSTREAM CG9850 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10169186	2L_10169186_SNP [dm3] 2L_10169186_SNP [dm6]	G	A	3.726e^-4	0.7	INTRON CG44153
2L	13842371	2L_13842371_SNP [dm3] 2L_13842371_SNP [dm6]	A	T	3.727e^-4	0.7	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	14645765	3L_14645765_SNP [dm3] 3L_14652665_SNP [dm6]	T	G	3.731e^-4	0.701	INTRON dlp
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	3.738e^-4	0.701	INTRON nAChRalpha3

Missing results

By genomic position
Variant impact
Gene name

Cuticul_5_9_C25_1_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results