DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.021e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.006130
In_3R_K	0.001328

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	14.7098	0.0006
In_3R_K	16.1995	0.0003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2718 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	9.313e^-8	0.108	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	1.153e^-7	0.108	INTRON CG14877
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	2.920e^-7	0.183	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	4.387e^-7	0.206	INTERGENIC
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	8.545e^-7	0.269	INTERGENIC
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	1.090e^-6	0.269	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	1.126e^-6	0.269	INTERGENIC
2L	11386564	2L_11386564_SNP [dm3] 2L_11386564_SNP [dm6]	A	T	1.172e^-6	0.269	INTERGENIC	regulatory region REDfly_CRMs
2L	13842371	2L_13842371_SNP [dm3] 2L_13842371_SNP [dm6]	A	T	1.519e^-6	0.269	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	1.524e^-6	0.269	INTRON Cad87A
X	6409874	X_6409874_SNP [dm3] X_6515841_SNP [dm6]	A	C	1.577e^-6	0.269	INTRON CG42340
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	1.919e^-6	0.3	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23121638	3R_23121638_SNP [dm3] 3R_27295916_SNP [dm6]	G	A	2.156e^-6	0.311	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	2.800e^-6	0.375	INTERGENIC
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	3.244e^-6	0.38	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	9793552	3L_9793552_SNP [dm3] 3L_9800452_SNP [dm6]	T	C	3.332e^-6	0.38	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	3.444e^-6	0.38	INTRON fru
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	3.950e^-6	0.412	INTRON sr
2L	10065602	2L_10065602_SNP [dm3] 2L_10065602_SNP [dm6]	C	T	4.444e^-6	0.419	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	4.584e^-6	0.419	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	5.024e^-6	0.419	INTRON 4EHP
3R	6537736	3R_6537736_SNP [dm3] 3R_10712014_SNP [dm6]	G	A	5.209e^-6	0.419	UPSTREAM CG14689 INTERGENIC
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	5.804e^-6	0.419	INTERGENIC
3R	6540118	3R_6540118_SNP [dm3] 3R_10714396_SNP [dm6]	T	C	6.371e^-6	0.419	UPSTREAM CG4073 INTERGENIC
2L	10065565	2L_10065565_SNP [dm3] 2L_10065565_SNP [dm6]	T	A	6.647e^-6	0.419	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10065597	2L_10065597_INS [dm3] 2L_10065597_INS [dm6]	T	TCGACACTTTTT...	6.660e^-6	0.419	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13842391	2L_13842391_SNP [dm3] 2L_13842391_SNP [dm6]	G	T	6.726e^-6	0.419	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	6.747e^-6	0.419	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7748925	3R_7748925_SNP [dm3] 3R_11923203_SNP [dm6]	G	A	7.089e^-6	0.419	INTRON Cad87A
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	7.121e^-6	0.419	INTRON Cad87A
2L	10065678	2L_10065678_SNP [dm3] 2L_10065678_SNP [dm6]	G	C	7.236e^-6	0.419	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10065557	2L_10065557_SNP [dm3] 2L_10065557_SNP [dm6]	T	C	7.255e^-6	0.419	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	7.560e^-6	0.419	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3R	6547465	3R_6547465_SNP [dm3] 3R_10721743_SNP [dm6]	T	C	7.671e^-6	0.419	INTERGENIC
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	8.024e^-6	0.419	DOWNSTREAM CG13991 INTERGENIC
2L	1639637	2L_1639637_SNP [dm3] 2L_1639637_SNP [dm6]	A	G	8.045e^-6	0.419	INTERGENIC
X	6136089	X_6136089_SNP [dm3] X_6242056_SNP [dm6]	G	A	8.389e^-6	0.425	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13842389	2L_13842389_SNP [dm3] 2L_13842389_SNP [dm6]	T	G	8.647e^-6	0.427	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	2612179	2L_2612179_SNP [dm3] 2L_2612179_SNP [dm6]	T	C	9.575e^-6	0.438	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	9.595e^-6	0.438	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2612143	2L_2612143_SNP [dm3] 2L_2612143_SNP [dm6]	C	G	9.819e^-6	0.438	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1698340	2L_1698340_SNP [dm3] 2L_1698340_SNP [dm6]	T	A	9.972e^-6	0.438	UTR_3_PRIME chinmo DOWNSTREAM chinmo
2L	6288211	2L_6288211_SNP [dm3] 2L_6288211_SNP [dm6]	G	A	1.025e^-5	0.438	INTRON Ddr	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_twi
2L	10074621	2L_10074621_SNP [dm3] 2L_10074621_SNP [dm6]	T	G	1.035e^-5	0.438	INTRON CG44153
3L	3261013	3L_3261013_DEL [dm3] 3L_3261013_DEL [dm6]	ATT	G	1.069e^-5	0.438	INTRON ckd
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	1.073e^-5	0.438	DOWNSTREAM CR44941 INTERGENIC
2L	2081577	2L_2081577_SNP [dm3] 2L_2081577_SNP [dm6]	T	C	1.103e^-5	0.439	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	1.146e^-5	0.439	INTRON kek3
2L	3196086	2L_3196086_SNP [dm3] 2L_3196086_SNP [dm6]	G	A	1.148e^-5	0.439	INTRON CG34393
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	1.182e^-5	0.444	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
2L	10065555	2L_10065555_SNP [dm3] 2L_10065555_SNP [dm6]	T	G	1.210e^-5	0.445	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6547412	3R_6547412_SNP [dm3] 3R_10721690_SNP [dm6]	T	C	1.298e^-5	0.468	INTERGENIC
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	1.325e^-5	0.469	INTRON fru
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	1.371e^-5	0.476	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6622812	3L_6622812_SNP [dm3] 3L_6629712_SNP [dm6]	T	C	1.411e^-5	0.477	INTRON GluRIA
2L	7401524	2L_7401524_SNP [dm3] 2L_7401524_SNP [dm6]	G	A	1.427e^-5	0.477	INTRON CG5171
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	1.492e^-5	0.477	INTRON beat-Vc
2L	11464676	2L_11464676_SNP [dm3] 2L_11464676_SNP [dm6]	A	G	1.497e^-5	0.477	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6547438	3R_6547438_SNP [dm3] 3R_10721716_SNP [dm6]	T	A	1.531e^-5	0.477	INTERGENIC
3R	11724703	3R_11724703_SNP [dm3] 3R_15898981_SNP [dm6]	T	G	1.538e^-5	0.477	INTRON glob1
2R	15172241	2R_15172241_SNP [dm3] 2R_19284736_SNP [dm6]	G	A	1.551e^-5	0.477	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2L	10065705	2L_10065705_SNP [dm3] 2L_10065705_SNP [dm6]	T	G	1.642e^-5	0.481	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4192646	2R_4192646_SNP [dm3] 2R_8305141_SNP [dm6]	G	A	1.654e^-5	0.481	DOWNSTREAM CR44447 INTERGENIC
X	6409717	X_6409717_SNP [dm3] X_6515684_SNP [dm6]	T	G	1.690e^-5	0.481	INTRON CG42340
2L	11844835	2L_11844835_SNP [dm3] 2L_11844835_SNP [dm6]	G	C	1.729e^-5	0.481	DOWNSTREAM CG14933 & 1 other INTRON Pde1c
3R	6547403	3R_6547403_SNP [dm3] 3R_10721681_SNP [dm6]	T	A	1.731e^-5	0.481	INTERGENIC
X	12151320	X_12151320_SNP [dm3] X_12257287_SNP [dm6]	A	T	1.751e^-5	0.481	INTRON Ten-a
X	12151446	X_12151446_SNP [dm3] X_12257413_SNP [dm6]	A	T	1.768e^-5	0.481	INTRON Ten-a
2L	11844920	2L_11844920_SNP [dm3] 2L_11844920_SNP [dm6]	T	C	1.771e^-5	0.481	DOWNSTREAM CG14933 & 1 other INTRON Pde1c
3R	2714565	3R_2714565_SNP [dm3] 3R_6888843_SNP [dm6]	T	A	1.803e^-5	0.483	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	1.865e^-5	0.489	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	1.892e^-5	0.489	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	1.904e^-5	0.489	SPLICE_SITE_REGION mbc INTRON mbc
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	1.954e^-5	0.495	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
X	19747288	X_19747288_SNP [dm3] X_19853255_SNP [dm6]	G	A	1.979e^-5	0.495	NON_SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	2.020e^-5	0.496	UTR_3_PRIME plum
2L	14975079	2L_14975079_SNP [dm3] 2L_14975079_SNP [dm6]	C	G	2.037e^-5	0.496	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8631631	X_8631631_SNP [dm3] X_8737598_SNP [dm6]	C	T	2.084e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	6538067	3R_6538067_SNP [dm3] 3R_10712345_SNP [dm6]	A	G	2.115e^-5	0.502	INTERGENIC
3L	3260995	3L_3260995_SNP [dm3] 3L_3260995_SNP [dm6]	C	T	2.172e^-5	0.507	INTRON ckd
3L	9607530	3L_9607530_SNP [dm3] 3L_9614430_SNP [dm6]	T	G	2.194e^-5	0.507	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	10893212	3L_10893212_SNP [dm3] 3L_10900112_SNP [dm6]	G	A	2.219e^-5	0.507	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
X	18372514	X_18372514_SNP [dm3] X_18478481_SNP [dm6]	G	A	2.279e^-5	0.512	INTRON CG32547
X	12151214	X_12151214_SNP [dm3] X_12257181_SNP [dm6]	A	G	2.348e^-5	0.512	INTRON Ten-a
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	2.357e^-5	0.512	DOWNSTREAM TkR86C INTERGENIC
2R	2646006	2R_2646006_SNP [dm3] 2R_6758501_SNP [dm6]	A	G	2.388e^-5	0.512	SYNONYMOUS_CODING CG9436	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2R	2645953	2R_2645953_SNP [dm3] 2R_6758448_SNP [dm6]	T	C	2.396e^-5	0.512	SYNONYMOUS_CODING CG9436	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	2.455e^-5	0.512	INTRON Cad87A
2R	2645782	2R_2645782_SNP [dm3] 2R_6758277_SNP [dm6]	C	G	2.455e^-5	0.512	SYNONYMOUS_CODING CG9436	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	2.456e^-5	0.512	UTR_3_PRIME CG5278
3L	9607372	3L_9607372_SNP [dm3] 3L_9614272_SNP [dm6]	A	T	2.496e^-5	0.514	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	2.526e^-5	0.515	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3L	10791100	3L_10791100_SNP [dm3] 3L_10798000_SNP [dm6]	C	T	2.678e^-5	0.519	INTERGENIC
2L	13087494	2L_13087494_SNP [dm3] 2L_13087494_SNP [dm6]	C	A	2.689e^-5	0.519	INTERGENIC
2L	4157013	2L_4157013_SNP [dm3] 2L_4157013_SNP [dm6]	A	T	2.699e^-5	0.519	INTERGENIC
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	2.706e^-5	0.519	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	2138686	2L_2138686_SNP [dm3] 2L_2138686_SNP [dm6]	A	T	2.709e^-5	0.519	INTRON tho2	TF binding site mE1_TFBS_sens
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	2.753e^-5	0.519	SYNONYMOUS_CODING NaPi-T
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	2.755e^-5	0.519	INTRON dpr10
X	9222216	X_9222216_SNP [dm3] X_9328183_SNP [dm6]	T	C	2.765e^-5	0.519	SYNONYMOUS_CODING CG34449 UTR_3_PRIME CG34449 DOWNSTREAM CG34450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	2.871e^-5	0.519	SYNONYMOUS_CODING GluRIIE
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	2.898e^-5	0.519	INTRON 4EHP
2L	15881826	2L_15881826_SNP [dm3] 2L_15881826_SNP [dm6]	A	T	2.923e^-5	0.519	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	2.923e^-5	0.519	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7728152	2R_7728152_SNP [dm3] 2R_11840647_SNP [dm6]	A	T	2.944e^-5	0.519	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23500234	3R_23500234_SNP [dm3] 3R_27674512_SNP [dm6]	C	T	2.962e^-5	0.519	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	2.967e^-5	0.519	INTRON fru
X	14398542	X_14398542_SNP [dm3] X_14504509_SNP [dm6]	A	G	3.052e^-5	0.519	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1266464	X_1266464_SNP [dm3] X_1372431_SNP [dm6]	T	C	3.082e^-5	0.519	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7090440	3L_7090440_SNP [dm3] 3L_7097340_SNP [dm6]	G	C	3.113e^-5	0.519	INTRON form3
X	1266374	X_1266374_SNP [dm3] X_1372341_SNP [dm6]	G	C	3.114e^-5	0.519	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10495593	2L_10495593_SNP [dm3] 2L_10495593_SNP [dm6]	A	G	3.151e^-5	0.519	INTRON Myo31DF
2L	1697095	2L_1697095_SNP [dm3] 2L_1697095_SNP [dm6]	A	G	3.159e^-5	0.519	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	16023396	3L_16023396_SNP [dm3] 3L_16030296_SNP [dm6]	T	C	3.172e^-5	0.519	UPSTREAM mir-4941 INTRON Notum	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	3.181e^-5	0.519	INTRON Cad87A
3R	10139244	3R_10139244_SNP [dm3] 3R_14313522_SNP [dm6]	T	G	3.216e^-5	0.519	SYNONYMOUS_CODING CG31321
3L	9219958	3L_9219958_SNP [dm3] 3L_9226858_SNP [dm6]	A	G	3.236e^-5	0.519	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	3.351e^-5	0.525	INTRON salm
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	3.369e^-5	0.525	INTRON kar	TF binding site mE1_TFBS_cad
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	3.380e^-5	0.525	INTERGENIC
X	18132907	X_18132907_SNP [dm3] X_18238874_SNP [dm6]	A	G	3.405e^-5	0.525	INTERGENIC	silencer mE1_HDAC_PRE
3L	8118698	3L_8118698_SNP [dm3] 3L_8125598_SNP [dm6]	G	C	3.433e^-5	0.525	SYNONYMOUS_CODING Uba2 UPSTREAM mRpL36	TF binding site mE1_TFBS_cad
2R	19415959	2R_19415959_SNP [dm3] 2R_23528436_SNP [dm6]	G	A	3.444e^-5	0.525	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
3L	12985214	3L_12985214_SNP [dm3] 3L_12992114_SNP [dm6]	T	A	3.615e^-5	0.537	INTERGENIC
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	3.620e^-5	0.537	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6547416	3R_6547416_SNP [dm3] 3R_10721694_SNP [dm6]	T	C	3.638e^-5	0.537	INTERGENIC
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	3.638e^-5	0.537	SYNONYMOUS_CODING GluRIIE
2L	13842433	2L_13842433_SNP [dm3] 2L_13842433_SNP [dm6]	A	C	3.753e^-5	0.543	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	6636954	3L_6636954_SNP [dm3] 3L_6643854_SNP [dm6]	A	C	3.782e^-5	0.543	INTERGENIC
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	3.787e^-5	0.543	INTERGENIC
X	18133047	X_18133047_SNP [dm3] X_18239014_SNP [dm6]	G	C	3.808e^-5	0.543	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	3.822e^-5	0.543	INTRON ckd
3L	15142588	3L_15142588_SNP [dm3] 3L_15149488_SNP [dm6]	A	G	3.888e^-5	0.548	INTRON FucTA
2L	556764	2L_556764_SNP [dm3] 2L_556764_SNP [dm6]	C	T	3.926e^-5	0.549	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2792980	3L_2792980_SNP [dm3] 3L_2792980_SNP [dm6]	A	G	3.974e^-5	0.552	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	4.025e^-5	0.553	INTERGENIC
X	12151545	X_12151545_SNP [dm3] X_12257512_SNP [dm6]	T	C	4.039e^-5	0.553	INTRON Ten-a
2L	15765759	2L_15765759_SNP [dm3] 2L_15765759_SNP [dm6]	C	G	4.068e^-5	0.553	UTR_3_PRIME CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	4.124e^-5	0.556	INTRON Cad87A
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	4.198e^-5	0.562	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3R	6739312	3R_6739312_SNP [dm3] 3R_10913590_SNP [dm6]	C	A	4.329e^-5	0.564	INTERGENIC
3R	5198177	3R_5198177_SNP [dm3] 3R_9372455_SNP [dm6]	C	T	4.341e^-5	0.564	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
2L	6306101	2L_6306101_SNP [dm3] 2L_6306101_SNP [dm6]	A	C	4.358e^-5	0.564	INTRON Ddr
3R	8512857	3R_8512857_SNP [dm3] 3R_12687135_SNP [dm6]	T	C	4.362e^-5	0.564	INTRON kar	TF binding site mE1_TFBS_cad
2L	17152836	2L_17152836_SNP [dm3] 2L_17152836_SNP [dm6]	G	A	4.391e^-5	0.564	INTRON beat-IIIa & 1 other
X	13487391	X_13487391_SNP [dm3] X_13593358_SNP [dm6]	G	C	4.407e^-5	0.564	DOWNSTREAM up & 1 other INTERGENIC
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	4.441e^-5	0.564	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15172244	2R_15172244_SNP [dm3] 2R_19284739_SNP [dm6]	G	T	4.465e^-5	0.564	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
X	1269878	X_1269878_SNP [dm3] X_1375845_SNP [dm6]	T	C	4.479e^-5	0.564	UTR_5_PRIME AMPKalpha DOWNSTREAM ssx INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9858621	3L_9858621_DEL [dm3] 3L_9865521_DEL [dm6]	CAG	C	4.540e^-5	0.565	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
3R	11507903	3R_11507903_SNP [dm3] 3R_15682181_SNP [dm6]	C	T	4.551e^-5	0.565	INTRON pxb
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	4.641e^-5	0.573	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	4191730	2R_4191730_SNP [dm3] 2R_8304225_SNP [dm6]	G	T	4.738e^-5	0.575	UPSTREAM CR44447 INTERGENIC
2R	7728342	2R_7728342_SNP [dm3] 2R_11840837_SNP [dm6]	G	C	4.755e^-5	0.575	UPSTREAM CG34229 INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	4.757e^-5	0.575	INTRON Octbeta3R
X	12079754	X_12079754_SNP [dm3] X_12185721_SNP [dm6]	G	A	4.843e^-5	0.575	INTRON Ten-a
2L	1093955	2L_1093955_SNP [dm3] 2L_1093955_SNP [dm6]	C	T	4.890e^-5	0.575	INTRON CG4629
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	4.913e^-5	0.575	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	4.942e^-5	0.575	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3195615	2L_3195615_SNP [dm3] 2L_3195615_SNP [dm6]	C	T	4.943e^-5	0.575	INTRON CG34393
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	4.977e^-5	0.575	INTRON TkR86C
2L	18576611	2L_18576611_SNP [dm3] 2L_18576611_SNP [dm6]	A	T	4.994e^-5	0.575	INTRON Pde11
2L	18576612	2L_18576612_SNP [dm3] 2L_18576612_SNP [dm6]	A	G	4.994e^-5	0.575	INTRON Pde11
3L	11248639	3L_11248639_INS [dm3] 3L_11255539_INS [dm6]	A	AC	5.056e^-5	0.576	UTR_3_PRIME scyl DOWNSTREAM scyl	TF binding site BDTNP1_TFBS_dl
2L	1176899	2L_1176899_SNP [dm3] 2L_1176899_SNP [dm6]	G	A	5.066e^-5	0.576	UPSTREAM CG4896 INTRON CG4887	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12151397	X_12151397_SNP [dm3] X_12257364_SNP [dm6]	C	T	5.117e^-5	0.577	INTRON Ten-a
3L	8196494	3L_8196494_SNP [dm3] 3L_8203394_SNP [dm6]	G	A	5.135e^-5	0.577	UPSTREAM CG7366 DOWNSTREAM CG13679 INTERGENIC
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	5.287e^-5	0.586	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11507907	3R_11507907_SNP [dm3] 3R_15682185_SNP [dm6]	C	A	5.367e^-5	0.586	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	5.418e^-5	0.586	INTRON capu	TF binding site mE1_TFBS_bab1
3L	9219931	3L_9219931_SNP [dm3] 3L_9226831_SNP [dm6]	C	T	5.439e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	5.620e^-5	0.586	INTRON Cad87A
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	5.675e^-5	0.586	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	5.714e^-5	0.586	INTRON CG42524
2R	11807389	2R_11807389_SNP [dm3] 2R_15919884_SNP [dm6]	A	T	5.820e^-5	0.586	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11603926	2R_11603926_SNP [dm3] 2R_15716421_SNP [dm6]	A	T	5.840e^-5	0.586	INTERGENIC
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	5.857e^-5	0.586	INTRON Ca-beta
3R	6563404	3R_6563404_SNP [dm3] 3R_10737682_SNP [dm6]	G	A	5.864e^-5	0.586	UTR_3_PRIME TkR86C
2R	17781611	2R_17781611_DEL [dm3] 2R_21894106_DEL [dm6]	CA	C	5.944e^-5	0.586	INTRON Fili
3R	8532736	3R_8532736_SNP [dm3] 3R_12707014_SNP [dm6]	A	T	6.020e^-5	0.586	SPLICE_SITE_REGION mus308 INTRON mus308	TF binding site mE1_TFBS_cad
3R	5317549	3R_5317549_SNP [dm3] 3R_9491827_SNP [dm6]	G	T	6.030e^-5	0.586	INTRON CG16779
2R	11819648	2R_11819648_SNP [dm3] 2R_15932143_SNP [dm6]	T	C	6.067e^-5	0.586	UPSTREAM bdg DOWNSTREAM Iap2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	10273673	3R_10273673_SNP [dm3] 3R_14447951_SNP [dm6]	T	C	6.075e^-5	0.586	INTRON cv-c
2R	7439530	2R_7439530_SNP [dm3] 2R_11552025_SNP [dm6]	A	G	6.145e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	6.200e^-5	0.586	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	14141597	3L_14141597_DEL [dm3] 3L_14148497_DEL [dm6]	TT	T	6.316e^-5	0.586	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	14298346	2L_14298346_SNP [dm3] 2L_14298346_SNP [dm6]	T	C	6.356e^-5	0.586	INTRON wb
X	8839960	X_8839960_SNP [dm3] X_8945927_SNP [dm6]	T	C	6.431e^-5	0.586	INTRON rdgA
X	13297429	X_13297429_INS [dm3] X_13403396_INS [dm6]	T	TAGGT	6.478e^-5	0.586	UPSTREAM CG12725 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3668754	2L_3668754_SNP [dm3] 2L_3668754_SNP [dm6]	A	G	6.492e^-5	0.586	SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	6.522e^-5	0.586	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15625328	2L_15625328_SNP [dm3] 2L_15625328_SNP [dm6]	T	G	6.542e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9888923	2R_9888923_SNP [dm3] 2R_14001418_SNP [dm6]	G	A	6.561e^-5	0.586	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14918590	2L_14918590_SNP [dm3] 2L_14918590_SNP [dm6]	T	C	6.563e^-5	0.586	INTRON CG42313
2L	2084191	2L_2084191_SNP [dm3] 2L_2084191_SNP [dm6]	A	G	6.673e^-5	0.586	INTRON dpr3 EXON CR44055	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14299097	3R_14299097_SNP [dm3] 3R_18473375_SNP [dm6]	C	T	6.679e^-5	0.586	INTRON fru
2L	11365771	2L_11365771_SNP [dm3] 2L_11365771_SNP [dm6]	G	T	6.701e^-5	0.586	INTRON salr
2L	13842321	2L_13842321_DEL [dm3] 2L_13842321_DEL [dm6]	AAATAGCTCA	A	6.703e^-5	0.586	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
X	16781634	X_16781634_SNP [dm3] X_16887601_SNP [dm6]	T	A	6.705e^-5	0.586	DOWNSTREAM Rcp INTRON CG4880	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	6.715e^-5	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10822823	3L_10822823_SNP [dm3] 3L_10829723_SNP [dm6]	C	T	6.839e^-5	0.586	INTERGENIC
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	6.867e^-5	0.586	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3880350	2L_3880350_SNP [dm3] 2L_3880350_SNP [dm6]	A	G	6.868e^-5	0.586	UPSTREAM capu INTRON capu
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	6.912e^-5	0.586	SYNONYMOUS_CODING CG6282
2R	9896969	2R_9896969_SNP [dm3] 2R_14009464_SNP [dm6]	C	T	6.942e^-5	0.586	UTR_5_PRIME mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	6.945e^-5	0.586	INTRON Prosap
3R	11587470	3R_11587470_SNP [dm3] 3R_15761748_SNP [dm6]	G	A	6.977e^-5	0.586	INTERGENIC
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	6.994e^-5	0.586	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	6.994e^-5	0.586	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	6.994e^-5	0.586	INTERGENIC
3R	7737381	3R_7737381_SNP [dm3] 3R_11911659_SNP [dm6]	C	G	7.112e^-5	0.586	INTRON Cad87A
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	7.120e^-5	0.586	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	7.126e^-5	0.586	INTERGENIC
2L	15760166	2L_15760166_SNP [dm3] 2L_15760166_SNP [dm6]	G	T	7.210e^-5	0.586	INTRON Gli	TF binding site mE1_TFBS_cad
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	7.318e^-5	0.586	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	9872454	2R_9872454_SNP [dm3] 2R_13984949_SNP [dm6]	C	A	7.328e^-5	0.586	UTR_3_PRIME RN-tre DOWNSTREAM CG8067
2R	11807485	2R_11807485_INS [dm3] 2R_15919980_INS [dm6]	T	TATATAAGGAAT...	7.378e^-5	0.586	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11385963	2L_11385963_INS [dm3] 2L_11385963_INS [dm6]	T	TTAATATTT	7.395e^-5	0.586	INTERGENIC	regulatory region REDfly_CRMs
3L	15774762	3L_15774762_SNP [dm3] 3L_15781662_SNP [dm6]	G	T	7.417e^-5	0.586	INTERGENIC
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	7.453e^-5	0.586	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1180652	2L_1180652_SNP [dm3] 2L_1180652_SNP [dm6]	G	T	7.491e^-5	0.586	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
3R	15102031	3R_15102031_SNP [dm3] 3R_19276309_SNP [dm6]	C	T	7.522e^-5	0.586	INTERGENIC
2L	15459131	2L_15459131_SNP [dm3] 2L_15459131_SNP [dm6]	A	G	7.563e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7771180	3R_7771180_SNP [dm3] 3R_11945458_SNP [dm6]	T	A	7.570e^-5	0.586	INTRON Cad87A
2L	10900460	2L_10900460_SNP [dm3] 2L_10900460_SNP [dm6]	T	C	7.605e^-5	0.586	DOWNSTREAM CG14070 INTERGENIC
X	3106817	X_3106817_SNP [dm3] X_3212784_SNP [dm6]	G	T	7.646e^-5	0.586	INTRON dnc
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	7.656e^-5	0.586	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	19662291	X_19662291_SNP [dm3] X_19768258_SNP [dm6]	A	T	7.681e^-5	0.586	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21852466	3R_21852466_SNP [dm3] 3R_26026744_SNP [dm6]	G	A	7.720e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	7100012	3L_7100012_SNP [dm3] 3L_7106912_SNP [dm6]	T	C	7.730e^-5	0.586	INTRON form3
2R	19452021	2R_19452021_SNP [dm3] 2R_23564498_SNP [dm6]	A	G	7.740e^-5	0.586	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5050835	2R_5050835_SNP [dm3] 2R_9163330_SNP [dm6]	T	C	7.778e^-5	0.586	NON_SYNONYMOUS_CODING CG8046 SPLICE_SITE_REGION CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14962568	2L_14962568_SNP [dm3] 2L_14962568_SNP [dm6]	T	C	7.787e^-5	0.586	INTRON CG42313
2R	8068377	2R_8068377_SNP [dm3] 2R_12180872_SNP [dm6]	G	T	7.804e^-5	0.586	NON_SYNONYMOUS_CODING wash UPSTREAM CG8860	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13475644	2R_13475644_SNP [dm3] 2R_17588139_SNP [dm6]	C	T	7.829e^-5	0.586	SYNONYMOUS_CODING RhoGAP54D
3R	6547459	3R_6547459_SNP [dm3] 3R_10721737_SNP [dm6]	T	G	7.842e^-5	0.586	INTERGENIC
3R	6474640	3R_6474640_SNP [dm3] 3R_10648918_SNP [dm6]	G	T	7.887e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	1114241	2L_1114241_SNP [dm3] 2L_1114241_SNP [dm6]	G	A	8.009e^-5	0.586	DOWNSTREAM Pino & 1 other INTERGENIC
2L	16151931	2L_16151931_SNP [dm3] 2L_16151931_SNP [dm6]	G	C	8.010e^-5	0.586	INTERGENIC
3R	7745581	3R_7745581_SNP [dm3] 3R_11919859_SNP [dm6]	G	A	8.068e^-5	0.586	INTRON Cad87A
2L	3197337	2L_3197337_SNP [dm3] 2L_3197337_SNP [dm6]	T	A	8.110e^-5	0.586	INTRON CG34393
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	8.123e^-5	0.586	INTERGENIC
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	8.142e^-5	0.586	INTRON salm
2R	11612175	2R_11612175_SNP [dm3] 2R_15724670_SNP [dm6]	T	C	8.273e^-5	0.586	INTERGENIC
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	8.274e^-5	0.586	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7766736	3R_7766736_SNP [dm3] 3R_11941014_SNP [dm6]	A	C	8.338e^-5	0.586	INTRON Cad87A
3R	6568461	3R_6568461_SNP [dm3] 3R_10742739_SNP [dm6]	C	T	8.423e^-5	0.586	INTRON TkR86C
3L	12063199	3L_12063199_SNP [dm3] 3L_12070099_SNP [dm6]	G	C	8.433e^-5	0.586	NON_SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13539307	2R_13539307_SNP [dm3] 2R_17651802_SNP [dm6]	T	G	8.486e^-5	0.586	INTRON CCHa1-R
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	8.503e^-5	0.586	INTERGENIC
3R	7747776	3R_7747776_SNP [dm3] 3R_11922054_SNP [dm6]	G	A	8.532e^-5	0.586	INTRON Cad87A
2R	9956630	2R_9956630_SNP [dm3] 2R_14069125_SNP [dm6]	G	C	8.555e^-5	0.586	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8531911	X_8531911_SNP [dm3] X_8637878_SNP [dm6]	G	A	8.573e^-5	0.586	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6409515	X_6409515_SNP [dm3] X_6515482_SNP [dm6]	C	A	8.590e^-5	0.586	INTRON CG42340
2R	20114165	2R_20114165_SNP [dm3] 2R_24226642_SNP [dm6]	G	A	8.625e^-5	0.586	INTRON CG30419
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	8.676e^-5	0.586	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
3R	26565903	3R_26565903_SNP [dm3] 3R_30740181_SNP [dm6]	G	A	8.750e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	8.763e^-5	0.586	INTERGENIC
3R	16473173	3R_16473173_SNP [dm3] 3R_20647451_SNP [dm6]	G	A	8.779e^-5	0.586	SYNONYMOUS_CODING GluRIIE
2R	9308579	2R_9308579_SNP [dm3] 2R_13421074_SNP [dm6]	C	T	8.864e^-5	0.586	SYNONYMOUS_CODING CG42321
X	5996719	X_5996719_SNP [dm3] X_6102686_SNP [dm6]	G	A	8.928e^-5	0.586	INTRON Nep1	TF binding site mE1_TFBS_chinmo
3R	7771152	3R_7771152_DEL [dm3] 3R_11945430_DEL [dm6]	ATGGGGTTATTGGACGGTGG...	A	8.954e^-5	0.586	INTRON Cad87A
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	8.963e^-5	0.586	INTERGENIC
2R	18367426	2R_18367426_SNP [dm3] 2R_22479921_SNP [dm6]	G	A	9.005e^-5	0.586	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11448546	2L_11448546_SNP [dm3] 2L_11448546_SNP [dm6]	C	A	9.032e^-5	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20589046	2L_20589046_SNP [dm3] 2L_20589046_SNP [dm6]	C	T	9.079e^-5	0.586	INTRON CR44909
3R	6498604	3R_6498604_SNP [dm3] 3R_10672882_SNP [dm6]	A	C	9.079e^-5	0.586	INTERGENIC
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	9.082e^-5	0.586	INTRON 4EHP
X	13487390	X_13487390_SNP [dm3] X_13593357_SNP [dm6]	C	G	9.091e^-5	0.586	DOWNSTREAM up & 1 other INTERGENIC
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	9.101e^-5	0.586	INTERGENIC
2R	19611990	2R_19611990_SNP [dm3] 2R_23724467_SNP [dm6]	A	G	9.143e^-5	0.586	INTRON Sesn
3R	7793642	3R_7793642_SNP [dm3] 3R_11967920_SNP [dm6]	C	A	9.208e^-5	0.586	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3215739	2L_3215739_SNP [dm3] 2L_3215739_SNP [dm6]	A	G	9.245e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16472591	3R_16472591_SNP [dm3] 3R_20646869_SNP [dm6]	T	A	9.255e^-5	0.586	INTRON GluRIIE
3R	16472596	3R_16472596_SNP [dm3] 3R_20646874_SNP [dm6]	T	A	9.255e^-5	0.586	INTRON GluRIIE
3R	16472615	3R_16472615_SNP [dm3] 3R_20646893_SNP [dm6]	G	A	9.255e^-5	0.586	SYNONYMOUS_CODING GluRIIE
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	9.255e^-5	0.586	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6538729	3R_6538729_SNP [dm3] 3R_10713007_SNP [dm6]	A	G	9.271e^-5	0.586	INTERGENIC
2L	15223820	2L_15223820_SNP [dm3] 2L_15223820_SNP [dm6]	C	G	9.284e^-5	0.586	INTERGENIC
3R	16472583	3R_16472583_SNP [dm3] 3R_20646861_SNP [dm6]	G	A	9.286e^-5	0.586	INTRON GluRIIE
3R	14996833	3R_14996833_SNP [dm3] 3R_19171111_SNP [dm6]	C	G	9.296e^-5	0.586	DOWNSTREAM sqz INTERGENIC
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	9.402e^-5	0.586	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8508217	X_8508217_SNP [dm3] X_8614184_SNP [dm6]	A	G	9.449e^-5	0.586	INTERGENIC
3R	3146296	3R_3146296_SNP [dm3] 3R_7320574_SNP [dm6]	A	G	9.474e^-5	0.586	INTERGENIC
3R	16472598	3R_16472598_SNP [dm3] 3R_20646876_SNP [dm6]	C	T	9.503e^-5	0.586	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
3R	6547488	3R_6547488_SNP [dm3] 3R_10721766_SNP [dm6]	C	T	9.505e^-5	0.586	INTERGENIC
2L	11363844	2L_11363844_SNP [dm3] 2L_11363844_SNP [dm6]	C	T	9.542e^-5	0.586	INTRON salr	TF binding site mE1_TFBS_HSA
3L	2792979	3L_2792979_SNP [dm3] 3L_2792979_SNP [dm6]	A	G	9.564e^-5	0.586	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4610055	2L_4610055_SNP [dm3] 2L_4610055_SNP [dm6]	G	A	9.596e^-5	0.586	INTRON dp
3R	6540033	3R_6540033_SNP [dm3] 3R_10714311_SNP [dm6]	C	G	9.612e^-5	0.586	UPSTREAM CG4073 INTERGENIC
2L	14975101	2L_14975101_SNP [dm3] 2L_14975101_SNP [dm6]	T	A	9.623e^-5	0.586	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14918126	2L_14918126_SNP [dm3] 2L_14918126_SNP [dm6]	G	T	9.639e^-5	0.586	INTRON CG42313
2R	8188143	2R_8188143_SNP [dm3] 2R_12300638_SNP [dm6]	C	T	9.642e^-5	0.586	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	9.646e^-5	0.586	INTERGENIC
2L	10065870	2L_10065870_SNP [dm3] 2L_10065870_SNP [dm6]	C	T	9.653e^-5	0.586	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22992511	3R_22992511_INS [dm3] 3R_27166789_INS [dm6]	T	TT	9.758e^-5	0.586	INTRON spn-D	regulatory region REDfly_CRMs
3R	7746303	3R_7746303_SNP [dm3] 3R_11920581_SNP [dm6]	A	C	9.780e^-5	0.586	INTRON Cad87A
2L	7400313	2L_7400313_DEL [dm3] 2L_7400313_DEL [dm6]	TT	T	9.822e^-5	0.586	DOWNSTREAM CR44079 INTERGENIC
3L	14921749	3L_14921749_SNP [dm3] 3L_14928649_SNP [dm6]	T	C	9.858e^-5	0.586	INTRON DCX-EMAP
2R	12231380	2R_12231380_SNP [dm3] 2R_16343875_SNP [dm6]	A	G	9.867e^-5	0.586	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	6537530	3R_6537530_SNP [dm3] 3R_10711808_SNP [dm6]	T	C	9.913e^-5	0.586	UPSTREAM CG14689 INTERGENIC
2L	14436439	2L_14436439_SNP [dm3] 2L_14436439_SNP [dm6]	T	C	9.920e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	19232925	2L_19232925_SNP [dm3] 2L_19232925_SNP [dm6]	T	A	9.923e^-5	0.586	INTERGENIC
3R	6582693	3R_6582693_SNP [dm3] 3R_10756971_SNP [dm6]	T	A	9.947e^-5	0.586	INTRON CG31272 EXON CR45015
2R	8207093	2R_8207093_SNP [dm3] 2R_12319588_SNP [dm6]	G	T	9.952e^-5	0.586	INTERGENIC
3R	10659191	3R_10659191_SNP [dm3] 3R_14833469_SNP [dm6]	G	C	9.987e^-5	0.586	INTRON btsz
2L	16007140	2L_16007140_SNP [dm3] 2L_16007140_SNP [dm6]	A	G	9.998e^-5	0.586	UPSTREAM CG31820 DOWNSTREAM CR44844 INTRON beat-Ic
3R	8559802	3R_8559802_SNP [dm3] 3R_12734080_SNP [dm6]	C	A	1.007e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1243373	X_1243373_SNP [dm3] X_1349340_SNP [dm6]	T	C	1.008e^-4	0.586	UTR_5_PRIME CG11418 DOWNSTREAM CG12773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	8820145	3L_8820145_SNP [dm3] 3L_8827045_SNP [dm6]	A	T	1.013e^-4	0.586	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	492839	2L_492839_SNP [dm3] 2L_492839_SNP [dm6]	T	C	1.014e^-4	0.586	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7729312	2R_7729312_INS [dm3] 2R_11841807_INS [dm6]	T	TTAAT	1.030e^-4	0.586	DOWNSTREAM S2P INTRON CG34229
2R	3873175	2R_3873175_SNP [dm3] 2R_7985670_SNP [dm6]	A	T	1.034e^-4	0.586	NON_SYNONYMOUS_CODING ACC INTRON ACC
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	1.042e^-4	0.586	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14975048	2L_14975048_SNP [dm3] 2L_14975048_SNP [dm6]	T	C	1.046e^-4	0.586	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12986450	3L_12986450_SNP [dm3] 3L_12993350_SNP [dm6]	A	G	1.047e^-4	0.586	INTERGENIC
2L	11768402	2L_11768402_INS [dm3] 2L_11768402_INS [dm6]	A	ACTCTTGTA	1.052e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11588249	3L_11588249_SNP [dm3] 3L_11595149_SNP [dm6]	A	T	1.053e^-4	0.586	INTERGENIC
3L	752862	3L_752862_DEL [dm3] 3L_752862_DEL [dm6]	TGGAA	T	1.055e^-4	0.586	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	3195297	2L_3195297_INS [dm3] 2L_3195297_INS [dm6]	T	TAT	1.057e^-4	0.586	INTRON CG34393
2L	16087163	2L_16087163_SNP [dm3] 2L_16087163_SNP [dm6]	G	A	1.059e^-4	0.586	INTERGENIC
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	1.060e^-4	0.586	INTRON CG9134
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.063e^-4	0.586	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7793643	3R_7793643_SNP [dm3] 3R_11967921_SNP [dm6]	T	C	1.065e^-4	0.586	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16473179	3R_16473179_SNP [dm3] 3R_20647457_SNP [dm6]	T	G	1.067e^-4	0.586	SYNONYMOUS_CODING GluRIIE
X	8949470	X_8949470_SNP [dm3] X_9055437_SNP [dm6]	T	G	1.068e^-4	0.586	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
3R	7800861	3R_7800861_SNP [dm3] 3R_11975139_SNP [dm6]	C	T	1.070e^-4	0.586	UPSTREAM Tango9 DOWNSTREAM CG10005 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	1.075e^-4	0.586	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	14668108	3L_14668108_SNP [dm3] 3L_14675008_SNP [dm6]	G	C	1.075e^-4	0.586	SYNONYMOUS_CODING CG4914 UPSTREAM tRNA:M3:70Fa DOWNSTREAM tRNA:M3:70Fb INTRON ome	TF binding site mE1_TFBS_sens
2R	9307810	2R_9307810_SNP [dm3] 2R_13420305_SNP [dm6]	C	A	1.077e^-4	0.586	INTRON CG42321
2L	7466366	2L_7466366_INS [dm3] 2L_7466366_INS [dm6]	G	GTGTCT	1.078e^-4	0.586	UPSTREAM CG6055 INTERGENIC
2L	6306113	2L_6306113_SNP [dm3] 2L_6306113_SNP [dm6]	T	A	1.078e^-4	0.586	INTRON Ddr
3R	7771150	3R_7771150_SNP [dm3] 3R_11945428_SNP [dm6]	G	A	1.079e^-4	0.586	INTRON Cad87A
2L	13842596	2L_13842596_SNP [dm3] 2L_13842596_SNP [dm6]	T	C	1.081e^-4	0.586	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	15816440	2L_15816440_SNP [dm3] 2L_15816440_SNP [dm6]	T	A	1.081e^-4	0.586	INTERGENIC
2L	14975064	2L_14975064_SNP [dm3] 2L_14975064_SNP [dm6]	G	T	1.082e^-4	0.586	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	1.086e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7466367	2L_7466367_DEL [dm3] 2L_7466367_DEL [dm6]	GCCAA	G	1.088e^-4	0.586	UPSTREAM CG6055 INTERGENIC
3R	14618578	3R_14618578_DEL [dm3] 3R_18792856_DEL [dm6]	TATTGTGTACCCAACAGACA...	T	1.089e^-4	0.586	UPSTREAM CG7720 INTRON CG7720
X	8949407	X_8949407_SNP [dm3] X_9055374_SNP [dm6]	T	C	1.092e^-4	0.586	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	1.095e^-4	0.586	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6571755	3R_6571755_SNP [dm3] 3R_10746033_SNP [dm6]	C	T	1.099e^-4	0.586	INTRON TkR86C
2R	15172026	2R_15172026_SNP [dm3] 2R_19284521_SNP [dm6]	T	A	1.101e^-4	0.586	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	10798126	X_10798126_SNP [dm3] X_10904093_SNP [dm6]	G	A	1.101e^-4	0.586	INTERGENIC
3R	26565277	3R_26565277_SNP [dm3] 3R_30739555_SNP [dm6]	G	A	1.101e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7751802	3R_7751802_SNP [dm3] 3R_11926080_SNP [dm6]	A	T	1.112e^-4	0.586	INTRON Cad87A
2L	14423141	2L_14423141_SNP [dm3] 2L_14423141_SNP [dm6]	T	C	1.115e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7972279	3R_7972279_SNP [dm3] 3R_12146557_SNP [dm6]	A	T	1.117e^-4	0.586	INTRON dpr15
3L	4168404	3L_4168404_SNP [dm3] 3L_4168404_SNP [dm6]	C	A	1.117e^-4	0.586	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4168407	3L_4168407_SNP [dm3] 3L_4168407_SNP [dm6]	A	G	1.117e^-4	0.586	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17577575	X_17577575_SNP [dm3] X_17683542_SNP [dm6]	T	C	1.138e^-4	0.586	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3842253	2L_3842253_SNP [dm3] 2L_3842253_SNP [dm6]	G	A	1.141e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7728164	2R_7728164_SNP [dm3] 2R_11840659_SNP [dm6]	T	G	1.145e^-4	0.586	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	16718356	X_16718356_SNP [dm3] X_16824323_SNP [dm6]	A	T	1.146e^-4	0.586	INTRON CG4829
3R	6539922	3R_6539922_SNP [dm3] 3R_10714200_SNP [dm6]	T	C	1.152e^-4	0.586	UPSTREAM CG4073 INTERGENIC
3R	2218960	3R_2218960_SNP [dm3] 3R_6393238_SNP [dm6]	A	T	1.159e^-4	0.586	INTRON Dmtn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	8245778	3R_8245778_SNP [dm3] 3R_12420056_SNP [dm6]	T	C	1.159e^-4	0.586	NON_SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_cad
2R	16726533	2R_16726533_SNP [dm3] 2R_20839028_SNP [dm6]	A	C	1.161e^-4	0.586	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15459159	2L_15459159_SNP [dm3] 2L_15459159_SNP [dm6]	G	A	1.165e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19502356	2R_19502356_SNP [dm3] 2R_23614833_SNP [dm6]	C	T	1.167e^-4	0.586	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	11719649	3R_11719649_SNP [dm3] 3R_15893927_SNP [dm6]	A	G	1.172e^-4	0.586	INTRON CG14877
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	1.176e^-4	0.586	INTRON H2.0
3L	9858438	3L_9858438_SNP [dm3] 3L_9865338_SNP [dm6]	T	C	1.177e^-4	0.586	SYNONYMOUS_CODING CG8108 UPSTREAM iPLA2-VIA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	5230396	3L_5230396_SNP [dm3] 3L_5237296_SNP [dm6]	C	G	1.182e^-4	0.586	DOWNSTREAM CG4669 INTRON shep
2L	11442116	2L_11442116_SNP [dm3] 2L_11442116_SNP [dm6]	A	G	1.188e^-4	0.586	INTRON salm	TF binding site mE1_TFBS_inv
2R	20148580	2R_20148580_SNP [dm3] 2R_24261057_SNP [dm6]	G	A	1.190e^-4	0.586	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12231356	2R_12231356_SNP [dm3] 2R_16343851_SNP [dm6]	A	C	1.192e^-4	0.586	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	13842418	2L_13842418_SNP [dm3] 2L_13842418_SNP [dm6]	A	G	1.194e^-4	0.586	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2R	9313418	2R_9313418_SNP [dm3] 2R_13425913_SNP [dm6]	G	A	1.195e^-4	0.586	SYNONYMOUS_CODING CG42321 INTRON CG42321
2R	12332843	2R_12332843_SNP [dm3] 2R_16445338_SNP [dm6]	C	A	1.198e^-4	0.586	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
3R	14825503	3R_14825503_SNP [dm3] 3R_18999781_SNP [dm6]	A	G	1.199e^-4	0.586	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3880357	2L_3880357_DEL [dm3] 2L_3880357_DEL [dm6]	CT	C	1.201e^-4	0.586	UPSTREAM capu INTRON capu
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	1.202e^-4	0.586	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5046805	2R_5046805_SNP [dm3] 2R_9159300_SNP [dm6]	G	A	1.212e^-4	0.586	INTRON CG8008
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	1.212e^-4	0.586	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6565952	3R_6565952_SNP [dm3] 3R_10740230_SNP [dm6]	C	G	1.213e^-4	0.586	INTRON TkR86C
2L	14923092	2L_14923092_SNP [dm3] 2L_14923092_SNP [dm6]	G	A	1.215e^-4	0.586	INTRON CG42313
X	13487407	X_13487407_SNP [dm3] X_13593374_SNP [dm6]	A	G	1.217e^-4	0.586	DOWNSTREAM up & 1 other INTERGENIC
3R	26566519	3R_26566519_SNP [dm3] 3R_30740797_SNP [dm6]	C	T	1.219e^-4	0.586	INTERGENIC
2L	2625939	2L_2625939_SNP [dm3] 2L_2625939_SNP [dm6]	A	G	1.220e^-4	0.586	EXON CR45705
3L	7100009	3L_7100009_INS [dm3] 3L_7106909_INS [dm6]	C	CT	1.223e^-4	0.586	INTRON form3
2R	16726551	2R_16726551_SNP [dm3] 2R_20839046_SNP [dm6]	C	T	1.224e^-4	0.586	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12790600	2R_12790600_INS [dm3] 2R_16903095_INS [dm6]	A	ACA	1.233e^-4	0.586	INTERGENIC
3R	2799791	3R_2799791_SNP [dm3] 3R_6974069_SNP [dm6]	T	C	1.234e^-4	0.586	INTRON Antp	TF binding site mE1_TFBS_bab1
X	18021553	X_18021553_SNP [dm3] X_18127520_SNP [dm6]	A	T	1.236e^-4	0.586	UPSTREAM CG32553 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8201896	2R_8201896_SNP [dm3] 2R_12314391_SNP [dm6]	A	C	1.236e^-4	0.586	DOWNSTREAM CG30203 INTRON CG30046
3L	5230307	3L_5230307_SNP [dm3] 3L_5237207_SNP [dm6]	C	T	1.237e^-4	0.586	DOWNSTREAM CG4669 INTRON shep
3R	3798435	3R_3798435_SNP [dm3] 3R_7972713_SNP [dm6]	T	A	1.237e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18149621	X_18149621_SNP [dm3] X_18255588_SNP [dm6]	T	A	1.239e^-4	0.586	INTERGENIC
3R	6565953	3R_6565953_SNP [dm3] 3R_10740231_SNP [dm6]	G	A	1.239e^-4	0.586	INTRON TkR86C
2L	14980689	2L_14980689_DEL [dm3] 2L_14980689_DEL [dm6]	AA	A	1.241e^-4	0.586	INTRON mol
3R	12651073	3R_12651073_SNP [dm3] 3R_16825351_SNP [dm6]	C	T	1.244e^-4	0.586	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	1.247e^-4	0.586	INTRON Cad87A
2L	17208845	2L_17208845_SNP [dm3] 2L_17208845_SNP [dm6]	G	C	1.247e^-4	0.586	INTRON beat-IIIc
X	2749391	X_2749391_SNP [dm3] X_2855358_SNP [dm6]	T	A	1.247e^-4	0.586	INTRON kirre
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	1.247e^-4	0.586	UTR_3_PRIME Ack DOWNSTREAM Chd64
2R	16242316	2R_16242316_SNP [dm3] 2R_20354811_SNP [dm6]	C	A	1.254e^-4	0.586	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11379988	2L_11379988_SNP [dm3] 2L_11379988_SNP [dm6]	T	C	1.258e^-4	0.586	INTERGENIC	regulatory region REDfly_CRMs
3L	8974269	3L_8974269_SNP [dm3] 3L_8981169_SNP [dm6]	G	A	1.265e^-4	0.586	UPSTREAM CG13314 INTERGENIC
3L	6570836	3L_6570836_SNP [dm3] 3L_6577736_SNP [dm6]	C	T	1.268e^-4	0.586	INTRON CG18769 & 1 other
3L	19063940	3L_19063940_SNP [dm3] 3L_19070840_SNP [dm6]	A	T	1.271e^-4	0.586	INTRON Mkp3
3R	19524614	3R_19524614_SNP [dm3] 3R_23698892_SNP [dm6]	C	T	1.274e^-4	0.586	UTR_5_PRIME prt DOWNSTREAM CG31468	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	1.275e^-4	0.586	INTERGENIC
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	1.276e^-4	0.586	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	1.278e^-4	0.586	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
2L	14918231	2L_14918231_SNP [dm3] 2L_14918231_SNP [dm6]	C	T	1.286e^-4	0.586	INTRON CG42313
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	1.291e^-4	0.586	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	1.303e^-4	0.586	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	5317463	3R_5317463_SNP [dm3] 3R_9491741_SNP [dm6]	T	A	1.312e^-4	0.586	INTRON CG16779
2R	15171997	2R_15171997_SNP [dm3] 2R_19284492_SNP [dm6]	T	G	1.317e^-4	0.586	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17152837	2L_17152837_SNP [dm3] 2L_17152837_SNP [dm6]	T	G	1.318e^-4	0.586	INTRON beat-IIIa & 1 other
X	13487396	X_13487396_SNP [dm3] X_13593363_SNP [dm6]	G	A	1.323e^-4	0.586	DOWNSTREAM up & 1 other INTERGENIC
2L	16112557	2L_16112557_SNP [dm3] 2L_16112557_SNP [dm6]	T	A	1.323e^-4	0.586	INTERGENIC
3R	7747789	3R_7747789_SNP [dm3] 3R_11922067_SNP [dm6]	A	G	1.324e^-4	0.586	INTRON Cad87A
2L	14975061	2L_14975061_SNP [dm3] 2L_14975061_SNP [dm6]	T	C	1.325e^-4	0.586	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6546240	3R_6546240_SNP [dm3] 3R_10720518_SNP [dm6]	T	C	1.326e^-4	0.586	INTERGENIC
3R	6545219	3R_6545219_SNP [dm3] 3R_10719497_SNP [dm6]	C	A	1.330e^-4	0.586	INTERGENIC
2R	10965623	2R_10965623_SNP [dm3] 2R_15078118_SNP [dm6]	C	T	1.330e^-4	0.586	INTERGENIC
2R	12851800	2R_12851800_SNP [dm3] 2R_16964295_SNP [dm6]	G	T	1.331e^-4	0.586	EXON CR44376
3R	26559040	3R_26559040_SNP [dm3] 3R_30733318_SNP [dm6]	C	A	1.335e^-4	0.586	INTERGENIC
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	1.336e^-4	0.586	INTRON kar	TF binding site mE1_TFBS_cad
X	2609794	X_2609794_SNP [dm3] X_2715761_SNP [dm6]	A	G	1.338e^-4	0.586	SYNONYMOUS_CODING CG2694
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	1.340e^-4	0.586	SYNONYMOUS_CODING Best2
2L	370618	2L_370618_SNP [dm3] 2L_370618_SNP [dm6]	G	T	1.345e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14423136	2L_14423136_SNP [dm3] 2L_14423136_SNP [dm6]	A	G	1.346e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16145866	3R_16145866_SNP [dm3] 3R_20320144_SNP [dm6]	A	T	1.347e^-4	0.586	INTRON CG42668
3R	19118534	3R_19118534_SNP [dm3] 3R_23292812_SNP [dm6]	T	C	1.351e^-4	0.586	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	18133937	X_18133937_SNP [dm3] X_18239904_SNP [dm6]	G	A	1.354e^-4	0.586	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	6826859	X_6826859_SNP [dm3] X_6932826_SNP [dm6]	T	C	1.356e^-4	0.586	INTRON CG14431
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	1.363e^-4	0.586	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
2R	15367744	2R_15367744_SNP [dm3] 2R_19480239_SNP [dm6]	A	G	1.363e^-4	0.586	INTRON par-1
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	1.364e^-4	0.586	INTERGENIC
2L	8096361	2L_8096361_INS [dm3] 2L_8096361_INS [dm6]	C	CGGTTTTCTTTAAAT...	1.374e^-4	0.586	INTRON Bsg
2L	21979204	2L_21979204_SNP [dm3] 2L_21979204_SNP [dm6]	T	A	1.375e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7453428	3L_7453428_SNP [dm3] 3L_7460328_SNP [dm6]	C	T	1.375e^-4	0.586	INTERGENIC
2L	492592	2L_492592_SNP [dm3] 2L_492592_SNP [dm6]	C	T	1.376e^-4	0.586	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3779395	2L_3779395_SNP [dm3] 2L_3779395_SNP [dm6]	C	T	1.385e^-4	0.586	INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8207077	2R_8207077_SNP [dm3] 2R_12319572_SNP [dm6]	G	A	1.392e^-4	0.586	INTERGENIC
2R	7728115	2R_7728115_INS [dm3] 2R_11840610_INS [dm6]	G	GAAGTAG	1.392e^-4	0.586	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13822668	2L_13822668_SNP [dm3] 2L_13822668_SNP [dm6]	T	C	1.393e^-4	0.586	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7727619	3R_7727619_SNP [dm3] 3R_11901897_SNP [dm6]	G	A	1.393e^-4	0.586	SYNONYMOUS_CODING Cad87A
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.397e^-4	0.586	INTERGENIC
3R	17979910	3R_17979910_SNP [dm3] 3R_22154188_SNP [dm6]	A	C	1.399e^-4	0.586	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11807365	2R_11807365_SNP [dm3] 2R_15919860_SNP [dm6]	T	A	1.400e^-4	0.586	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19232913	2L_19232913_SNP [dm3] 2L_19232913_SNP [dm6]	G	A	1.407e^-4	0.586	INTERGENIC
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	1.407e^-4	0.586	INTRON Cad87A	TF binding site mE1_TFBS_HSA
2R	16539076	2R_16539076_SNP [dm3] 2R_20651571_SNP [dm6]	G	T	1.411e^-4	0.586	DOWNSTREAM CG16799 INTRON Lrt	TF binding site mE1_TFBS_HSA
3R	7727598	3R_7727598_SNP [dm3] 3R_11901876_SNP [dm6]	T	C	1.414e^-4	0.586	SYNONYMOUS_CODING Cad87A
3R	16772972	3R_16772972_SNP [dm3] 3R_20947250_SNP [dm6]	C	G	1.419e^-4	0.586	INTERGENIC
3R	10307451	3R_10307451_SNP [dm3] 3R_14481729_SNP [dm6]	C	T	1.421e^-4	0.586	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2165423	2L_2165423_SNP [dm3] 2L_2165423_SNP [dm6]	T	C	1.425e^-4	0.586	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	6545224	3R_6545224_SNP [dm3] 3R_10719502_SNP [dm6]	C	A	1.429e^-4	0.586	INTERGENIC
2L	14975050	2L_14975050_SNP [dm3] 2L_14975050_SNP [dm6]	C	T	1.429e^-4	0.586	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6537578	3R_6537578_SNP [dm3] 3R_10711856_SNP [dm6]	T	A	1.430e^-4	0.586	UPSTREAM CG14689 INTERGENIC
3R	6533166	3R_6533166_SNP [dm3] 3R_10707444_SNP [dm6]	T	G	1.431e^-4	0.586	UTR_3_PRIME CG14684 & 1 other UPSTREAM CG31467	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	1403105	2R_1403105_SNP [dm3] 2R_5515600_SNP [dm6]	G	A	1.445e^-4	0.586	INTRON CG30438
3L	9858799	3L_9858799_SNP [dm3] 3L_9865699_SNP [dm6]	T	C	1.456e^-4	0.586	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
2L	16389889	2L_16389889_SNP [dm3] 2L_16389889_SNP [dm6]	A	T	1.457e^-4	0.586	INTERGENIC
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	1.458e^-4	0.586	INTRON btsz
3L	1555117	3L_1555117_SNP [dm3] 3L_1555117_SNP [dm6]	C	T	1.458e^-4	0.586	SYNONYMOUS_CODING Cct2 DOWNSTREAM CG12099	TF binding site mE1_TFBS_cad
3R	7757160	3R_7757160_SNP [dm3] 3R_11931438_SNP [dm6]	A	G	1.462e^-4	0.586	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	6219136	3R_6219136_SNP [dm3] 3R_10393414_SNP [dm6]	T	A	1.465e^-4	0.586	INTRON cwo
3R	14923509	3R_14923509_SNP [dm3] 3R_19097787_SNP [dm6]	T	G	1.466e^-4	0.586	INTRON CG6040
X	5404350	X_5404350_SNP [dm3] X_5510317_SNP [dm6]	C	T	1.466e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15327894	X_15327894_SNP [dm3] X_15433861_SNP [dm6]	A	C	1.467e^-4	0.586	INTRON Cngl
3L	12509279	3L_12509279_SNP [dm3] 3L_12516179_SNP [dm6]	C	T	1.469e^-4	0.586	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	19174149	X_19174149_SNP [dm3] X_19280116_SNP [dm6]	C	T	1.483e^-4	0.586	UTR_5_PRIME CG8028 INTRON CG8028
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	1.488e^-4	0.586	INTRON CG42313
3L	13253739	3L_13253739_SNP [dm3] 3L_13260639_SNP [dm6]	G	C	1.490e^-4	0.586	INTRON caps
2L	14923087	2L_14923087_SNP [dm3] 2L_14923087_SNP [dm6]	G	A	1.495e^-4	0.586	SPLICE_SITE_REGION CG42313 INTRON CG42313
2L	11769263	2L_11769263_SNP [dm3] 2L_11769263_SNP [dm6]	G	T	1.496e^-4	0.586	INTERGENIC
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	1.500e^-4	0.586	INTRON CG18769
3R	5317630	3R_5317630_SNP [dm3] 3R_9491908_SNP [dm6]	G	A	1.501e^-4	0.586	INTRON CG16779
2L	11393015	2L_11393015_SNP [dm3] 2L_11393015_SNP [dm6]	C	T	1.504e^-4	0.586	UPSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
2L	11390624	2L_11390624_SNP [dm3] 2L_11390624_SNP [dm6]	C	G	1.507e^-4	0.586	EXON CR43681	regulatory region REDfly_CRMs
X	7213615	X_7213615_SNP [dm3] X_7319582_SNP [dm6]	T	C	1.508e^-4	0.586	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	18068660	2L_18068660_SNP [dm3] 2L_18068660_SNP [dm6]	C	T	1.509e^-4	0.586	INTRON rdo
2L	11452026	2L_11452026_SNP [dm3] 2L_11452026_SNP [dm6]	T	A	1.510e^-4	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	1.521e^-4	0.586	INTRON Cad87A
3L	15287574	3L_15287574_SNP [dm3] 3L_15294474_SNP [dm6]	G	T	1.527e^-4	0.586	INTERGENIC
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	1.528e^-4	0.586	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14809309	2L_14809309_SNP [dm3] 2L_14809309_SNP [dm6]	A	T	1.532e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15605997	2L_15605997_SNP [dm3] 2L_15605997_SNP [dm6]	G	A	1.534e^-4	0.586	INTERGENIC
X	16035639	X_16035639_SNP [dm3] X_16141606_SNP [dm6]	A	G	1.536e^-4	0.586	INTRON disco-r
3R	6545300	3R_6545300_SNP [dm3] 3R_10719578_SNP [dm6]	C	T	1.537e^-4	0.586	INTERGENIC
2R	8202112	2R_8202112_SNP [dm3] 2R_12314607_SNP [dm6]	T	G	1.537e^-4	0.586	DOWNSTREAM CG30203 INTRON CG30046
3R	6568492	3R_6568492_SNP [dm3] 3R_10742770_SNP [dm6]	C	T	1.542e^-4	0.586	INTRON TkR86C
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	1.544e^-4	0.586	UPSTREAM CG10126 INTERGENIC
X	14545710	X_14545710_SNP [dm3] X_14651677_SNP [dm6]	C	A	1.545e^-4	0.586	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17092721	2L_17092721_SNP [dm3] 2L_17092721_SNP [dm6]	A	T	1.551e^-4	0.586	INTERGENIC
3R	7853617	3R_7853617_SNP [dm3] 3R_12027895_SNP [dm6]	G	A	1.553e^-4	0.586	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
3L	9607596	3L_9607596_SNP [dm3] 3L_9614496_SNP [dm6]	T	C	1.558e^-4	0.586	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8357927	3R_8357927_SNP [dm3] 3R_12532205_SNP [dm6]	T	C	1.566e^-4	0.586	INTRON Octbeta3R
2R	10938777	2R_10938777_SNP [dm3] 2R_15051272_SNP [dm6]	T	A	1.567e^-4	0.586	UPSTREAM CR43622 INTERGENIC
3L	7597034	3L_7597034_SNP [dm3] 3L_7603934_SNP [dm6]	C	T	1.574e^-4	0.586	NON_SYNONYMOUS_CODING CG33275
2L	11390628	2L_11390628_SNP [dm3] 2L_11390628_SNP [dm6]	G	A	1.577e^-4	0.586	EXON CR43681	regulatory region REDfly_CRMs
2L	16389803	2L_16389803_SNP [dm3] 2L_16389803_SNP [dm6]	G	A	1.583e^-4	0.586	INTERGENIC
X	13487395	X_13487395_SNP [dm3] X_13593362_SNP [dm6]	G	T	1.588e^-4	0.586	DOWNSTREAM up & 1 other INTERGENIC
2L	11363920	2L_11363920_SNP [dm3] 2L_11363920_SNP [dm6]	G	T	1.590e^-4	0.586	INTRON salr
3R	26566414	3R_26566414_SNP [dm3] 3R_30740692_SNP [dm6]	A	G	1.591e^-4	0.586	INTERGENIC
3R	22040256	3R_22040256_SNP [dm3] 3R_26214534_SNP [dm6]	C	T	1.592e^-4	0.586	INTERGENIC
2R	10070765	2R_10070765_DEL [dm3] 2R_14183260_DEL [dm6]	GG	G	1.592e^-4	0.586	DOWNSTREAM cg INTERGENIC
2L	490180	2L_490180_SNP [dm3] 2L_490180_SNP [dm6]	C	A	1.595e^-4	0.586	UTR_5_PRIME ush UPSTREAM ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	1.614e^-4	0.586	INTRON kek5
3R	7747871	3R_7747871_SNP [dm3] 3R_11922149_SNP [dm6]	G	C	1.614e^-4	0.586	INTRON Cad87A
2R	20011337	2R_20011337_SNP [dm3] 2R_24123814_SNP [dm6]	T	C	1.616e^-4	0.586	SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7746556	3R_7746556_SNP [dm3] 3R_11920834_SNP [dm6]	T	G	1.619e^-4	0.586	INTRON Cad87A
2L	16164674	2L_16164674_SNP [dm3] 2L_16164674_SNP [dm6]	C	T	1.619e^-4	0.586	INTERGENIC
3R	6544144	3R_6544144_SNP [dm3] 3R_10718422_SNP [dm6]	G	A	1.627e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_inv
X	10550006	X_10550006_SNP [dm3] X_10655973_SNP [dm6]	C	T	1.631e^-4	0.586	INTRON X11Lbeta
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	1.633e^-4	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	1.639e^-4	0.586	UPSTREAM CG34210 INTERGENIC
3R	27145759	3R_27145759_SNP [dm3] 3R_31320037_SNP [dm6]	A	T	1.640e^-4	0.586	INTRON CG34347
2L	6397267	2L_6397267_SNP [dm3] 2L_6397267_SNP [dm6]	A	G	1.646e^-4	0.586	UPSTREAM CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21689916	3L_21689916_SNP [dm3] 3L_21696816_SNP [dm6]	T	G	1.646e^-4	0.586	INTRON CG32447
2L	8206449	2L_8206449_SNP [dm3] 2L_8206449_SNP [dm6]	G	A	1.650e^-4	0.586	SYNONYMOUS_CODING CG8419 UPSTREAM CR44120 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6565946	3R_6565946_SNP [dm3] 3R_10740224_SNP [dm6]	G	A	1.657e^-4	0.586	INTRON TkR86C
3R	8511192	3R_8511192_SNP [dm3] 3R_12685470_SNP [dm6]	C	A	1.659e^-4	0.586	INTRON kar
3R	7735910	3R_7735910_SNP [dm3] 3R_11910188_SNP [dm6]	G	T	1.660e^-4	0.586	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14922323	3L_14922323_SNP [dm3] 3L_14929223_SNP [dm6]	A	C	1.660e^-4	0.586	INTRON DCX-EMAP
2L	17208860	2L_17208860_SNP [dm3] 2L_17208860_SNP [dm6]	C	G	1.663e^-4	0.586	INTRON beat-IIIc
X	18133621	X_18133621_SNP [dm3] X_18239588_SNP [dm6]	A	G	1.663e^-4	0.586	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	8482403	3R_8482403_SNP [dm3] 3R_12656681_SNP [dm6]	A	G	1.665e^-4	0.586	UTR_5_PRIME CG6225
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	1.666e^-4	0.586	INTRON GC1
2L	7400288	2L_7400288_SNP [dm3] 2L_7400288_SNP [dm6]	A	C	1.674e^-4	0.586	DOWNSTREAM CR44079 INTERGENIC
2L	1628224	2L_1628224_SNP [dm3] 2L_1628224_SNP [dm6]	C	T	1.674e^-4	0.586	INTERGENIC
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	1.676e^-4	0.586	INTRON salm
2L	490858	2L_490858_SNP [dm3] 2L_490858_SNP [dm6]	A	G	1.679e^-4	0.586	UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	1.679e^-4	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7989431	2L_7989431_SNP [dm3] 2L_7989431_SNP [dm6]	T	G	1.680e^-4	0.586	NON_SYNONYMOUS_CODING pes
2L	14239719	2L_14239719_SNP [dm3] 2L_14239719_SNP [dm6]	G	T	1.681e^-4	0.586	INTERGENIC
2L	11378411	2L_11378411_SNP [dm3] 2L_11378411_SNP [dm6]	A	T	1.682e^-4	0.586	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	7133756	3R_7133756_SNP [dm3] 3R_11308034_SNP [dm6]	G	T	1.684e^-4	0.586	INTERGENIC
3L	7883956	3L_7883956_SNP [dm3] 3L_7890856_SNP [dm6]	T	C	1.687e^-4	0.586	INTRON CG32365
3R	14825499	3R_14825499_SNP [dm3] 3R_18999777_SNP [dm6]	T	C	1.689e^-4	0.586	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24721958	3R_24721958_SNP [dm3] 3R_28896236_SNP [dm6]	C	G	1.692e^-4	0.586	INTRON Doa
2L	491546	2L_491546_SNP [dm3] 2L_491546_SNP [dm6]	G	A	1.695e^-4	0.586	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	9251965	3R_9251965_SNP [dm3] 3R_13426243_SNP [dm6]	A	C	1.696e^-4	0.586	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
3L	5955549	3L_5955549_SNP [dm3] 3L_5962449_SNP [dm6]	T	A	1.713e^-4	0.586	INTERGENIC
2L	17142100	2L_17142100_SNP [dm3] 2L_17142100_SNP [dm6]	C	T	1.723e^-4	0.586	INTRON beat-IIIa & 1 other
2L	18576723	2L_18576723_SNP [dm3] 2L_18576723_SNP [dm6]	T	G	1.723e^-4	0.586	INTRON Pde11
2R	7727857	2R_7727857_SNP [dm3] 2R_11840352_SNP [dm6]	C	T	1.724e^-4	0.586	UPSTREAM Sobp INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2929510	2L_2929510_SNP [dm3] 2L_2929510_SNP [dm6]	C	A	1.729e^-4	0.586	INTRON lilli
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	1.734e^-4	0.586	INTRON Octbeta2R
2L	11452018	2L_11452018_SNP [dm3] 2L_11452018_SNP [dm6]	G	A	1.737e^-4	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	1.743e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	1.744e^-4	0.586	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	1.745e^-4	0.586	INTRON b	TF binding site mE1_TFBS_cad
2L	6626444	2L_6626444_SNP [dm3] 2L_6626444_SNP [dm6]	T	C	1.746e^-4	0.586	SYNONYMOUS_CODING Oatp26F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	1.747e^-4	0.586	INTRON nAChRalpha3
2R	10937107	2R_10937107_SNP [dm3] 2R_15049602_SNP [dm6]	T	C	1.749e^-4	0.586	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14423107	2L_14423107_SNP [dm3] 2L_14423107_SNP [dm6]	T	A	1.753e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_cad
X	1275668	X_1275668_SNP [dm3] X_1381635_SNP [dm6]	A	G	1.759e^-4	0.586	INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14299142	3R_14299142_SNP [dm3] 3R_18473420_SNP [dm6]	T	A	1.759e^-4	0.586	INTRON fru
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	1.759e^-4	0.586	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11331124	2L_11331124_SNP [dm3] 2L_11331124_SNP [dm6]	G	A	1.760e^-4	0.586	DOWNSTREAM CR44584 INTERGENIC
3L	18271537	3L_18271537_SNP [dm3] 3L_18278437_SNP [dm6]	T	C	1.764e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3032814	3L_3032814_SNP [dm3] 3L_3032814_SNP [dm6]	G	A	1.771e^-4	0.586	INTERGENIC
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	1.771e^-4	0.586	SYNONYMOUS_CODING msps
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	1.778e^-4	0.586	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
2R	19415998	2R_19415998_SNP [dm3] 2R_23528475_SNP [dm6]	A	C	1.788e^-4	0.586	DOWNSTREAM mi INTRON bw
3R	2323740	3R_2323740_SNP [dm3] 3R_6498018_SNP [dm6]	C	A	1.793e^-4	0.586	INTERGENIC
3R	25963891	3R_25963891_SNP [dm3] 3R_30138169_SNP [dm6]	G	A	1.801e^-4	0.586	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18042586	2R_18042586_SNP [dm3] 2R_22155081_SNP [dm6]	G	A	1.802e^-4	0.586	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4728708	2R_4728708_SNP [dm3] 2R_8841203_SNP [dm6]	A	C	1.803e^-4	0.586	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12606344	2L_12606344_SNP [dm3] 2L_12606344_SNP [dm6]	G	A	1.803e^-4	0.586	INTRON nub	TF binding site BDTNP1_TFBS_da
X	19589712	X_19589712_SNP [dm3] X_19695679_SNP [dm6]	C	T	1.806e^-4	0.586	UPSTREAM CG14229 INTERGENIC	transposable element FlyBase
2L	11468478	2L_11468478_SNP [dm3] 2L_11468478_SNP [dm6]	C	T	1.808e^-4	0.586	INTERGENIC
2L	11191327	2L_11191327_SNP [dm3] 2L_11191327_SNP [dm6]	A	T	1.809e^-4	0.586	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	1.809e^-4	0.586	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	18865056	2R_18865056_SNP [dm3] 2R_22977533_SNP [dm6]	C	G	1.810e^-4	0.586	INTERGENIC
3R	7771149	3R_7771149_SNP [dm3] 3R_11945427_SNP [dm6]	G	A	1.815e^-4	0.586	INTRON Cad87A
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	1.818e^-4	0.586	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
2R	20007117	2R_20007117_MNP [dm3] 2R_24119594_MNP [dm6]	TTT	AAC	1.825e^-4	0.586	UTR_5_PRIME CG3257	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	6538176	3R_6538176_INS [dm3] 3R_10712454_INS [dm6]	A	AA	1.825e^-4	0.586	INTERGENIC
2L	4255067	2L_4255067_SNP [dm3] 2L_4255067_SNP [dm6]	T	C	1.831e^-4	0.586	DOWNSTREAM CR45294 INTERGENIC
2R	10069592	2R_10069592_SNP [dm3] 2R_14182087_SNP [dm6]	T	C	1.831e^-4	0.586	UTR_3_PRIME cg
X	17186335	X_17186335_SNP [dm3] X_17292302_SNP [dm6]	T	A	1.832e^-4	0.586	UPSTREAM Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3L	2480481	3L_2480481_SNP [dm3] 3L_2480481_SNP [dm6]	G	A	1.837e^-4	0.586	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4795627	2L_4795627_SNP [dm3] 2L_4795627_SNP [dm6]	T	C	1.842e^-4	0.586	DOWNSTREAM Clect27 INTRON CG3294	TF binding site mE1_TFBS_cad
3L	14921539	3L_14921539_SNP [dm3] 3L_14928439_SNP [dm6]	C	G	1.852e^-4	0.586	INTRON DCX-EMAP
2R	8207125	2R_8207125_SNP [dm3] 2R_12319620_SNP [dm6]	G	T	1.853e^-4	0.586	DOWNSTREAM CR44316 INTERGENIC
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	1.854e^-4	0.586	INTRON salm
2R	11613984	2R_11613984_SNP [dm3] 2R_15726479_SNP [dm6]	C	T	1.862e^-4	0.586	UPSTREAM CG30089 INTERGENIC	TF binding site mE1_TFBS_cad
X	10798115	X_10798115_SNP [dm3] X_10904082_SNP [dm6]	T	C	1.862e^-4	0.586	INTERGENIC
2R	9538797	2R_9538797_SNP [dm3] 2R_13651292_SNP [dm6]	C	G	1.870e^-4	0.586	INTRON fas
2R	7439171	2R_7439171_SNP [dm3] 2R_11551666_SNP [dm6]	C	T	1.871e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5404373	X_5404373_SNP [dm3] X_5510340_SNP [dm6]	A	T	1.871e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	1.872e^-4	0.586	INTERGENIC
2L	14101733	2L_14101733_DEL [dm3] 2L_14101733_DEL [dm6]	GGACTTTTT	CC	1.873e^-4	0.586	INTERGENIC
2L	11364177	2L_11364177_SNP [dm3] 2L_11364177_SNP [dm6]	A	C	1.874e^-4	0.586	INTRON salr	TF binding site mE1_TFBS_HSA
3R	14618738	3R_14618738_SNP [dm3] 3R_18793016_SNP [dm6]	A	T	1.877e^-4	0.586	UPSTREAM CG7720 INTRON CG7720
3R	7757721	3R_7757721_SNP [dm3] 3R_11931999_SNP [dm6]	A	G	1.883e^-4	0.586	INTRON Cad87A & 1 other
3R	7742101	3R_7742101_SNP [dm3] 3R_11916379_SNP [dm6]	C	A	1.883e^-4	0.586	INTRON Cad87A
3R	25654913	3R_25654913_SNP [dm3] 3R_29829191_SNP [dm6]	C	A	1.885e^-4	0.586	INTRON Atg16	enhancer mE1_CBP_Enhancers
3L	14154659	3L_14154659_SNP [dm3] 3L_14161559_SNP [dm6]	C	G	1.887e^-4	0.586	INTERGENIC	regulatory region REDfly_CRMs
3R	25654908	3R_25654908_SNP [dm3] 3R_29829186_SNP [dm6]	G	T	1.887e^-4	0.586	INTRON Atg16	enhancer mE1_CBP_Enhancers
X	11578971	X_11578971_SNP [dm3] X_11684938_SNP [dm6]	A	T	1.888e^-4	0.586	INTRON bif
3L	8983021	3L_8983021_SNP [dm3] 3L_8989921_SNP [dm6]	G	C	1.888e^-4	0.586	DOWNSTREAM CG5068 & 1 other INTRON CG5280
2R	16928496	2R_16928496_INS [dm3] 2R_21040991_INS [dm6]	T	TT	1.889e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4610056	2L_4610056_SNP [dm3] 2L_4610056_SNP [dm6]	G	A	1.890e^-4	0.586	INTRON dp
2L	11458556	2L_11458556_SNP [dm3] 2L_11458556_SNP [dm6]	A	C	1.891e^-4	0.586	INTERGENIC
3R	14299106	3R_14299106_SNP [dm3] 3R_18473384_SNP [dm6]	T	A	1.892e^-4	0.586	INTRON fru
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	1.894e^-4	0.586	INTRON CG15630
2L	20074668	2L_20074668_SNP [dm3] 2L_20074668_SNP [dm6]	T	C	1.896e^-4	0.586	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	1.899e^-4	0.586	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	1.902e^-4	0.586	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	8511590	3R_8511590_SNP [dm3] 3R_12685868_SNP [dm6]	T	C	1.916e^-4	0.586	INTRON kar	TF binding site mE1_TFBS_cad
2R	19629187	2R_19629187_SNP [dm3] 2R_23741664_SNP [dm6]	T	G	1.921e^-4	0.586	INTRON egl
2R	12138490	2R_12138490_SNP [dm3] 2R_16250985_SNP [dm6]	T	A	1.922e^-4	0.586	INTRON CngA
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	1.922e^-4	0.586	INTRON Octbeta3R
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	1.929e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15177993	2L_15177993_SNP [dm3] 2L_15177993_SNP [dm6]	A	G	1.938e^-4	0.586	INTRON CG4168
2R	17803628	2R_17803628_SNP [dm3] 2R_21916123_SNP [dm6]	C	T	1.941e^-4	0.586	INTRON Fili
2L	17208870	2L_17208870_SNP [dm3] 2L_17208870_SNP [dm6]	C	G	1.945e^-4	0.586	INTRON beat-IIIc
2R	7728293	2R_7728293_SNP [dm3] 2R_11840788_SNP [dm6]	T	G	1.949e^-4	0.586	UPSTREAM Sobp & 1 other INTERGENIC
3R	10307362	3R_10307362_SNP [dm3] 3R_14481640_SNP [dm6]	T	A	1.952e^-4	0.586	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17803635	2R_17803635_SNP [dm3] 2R_21916130_SNP [dm6]	A	T	1.953e^-4	0.586	INTRON Fili
2L	11346078	2L_11346078_SNP [dm3] 2L_11346078_SNP [dm6]	A	G	1.955e^-4	0.586	INTERGENIC
3R	19323752	3R_19323752_SNP [dm3] 3R_23498030_SNP [dm6]	T	A	1.963e^-4	0.586	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	1.969e^-4	0.586	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
3L	6567946	3L_6567946_SNP [dm3] 3L_6574846_SNP [dm6]	G	A	1.970e^-4	0.586	INTRON CG18769 & 1 other
2L	10600598	2L_10600598_DEL [dm3] 2L_10600598_DEL [dm6]	ACTTAC	T	1.972e^-4	0.586	INTRON Trim9
2R	16929933	2R_16929933_SNP [dm3] 2R_21042428_SNP [dm6]	T	A	1.973e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16023400	3L_16023400_SNP [dm3] 3L_16030300_SNP [dm6]	C	G	1.973e^-4	0.586	UPSTREAM mir-4941 INTRON Notum	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14628192	2L_14628192_SNP [dm3] 2L_14628192_SNP [dm6]	A	G	1.975e^-4	0.586	INTRON osp	TF binding site mE1_TFBS_HSA
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	1.980e^-4	0.586	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6565889	3R_6565889_SNP [dm3] 3R_10740167_SNP [dm6]	A	G	1.981e^-4	0.586	INTRON TkR86C
3L	9788347	3L_9788347_SNP [dm3] 3L_9795247_SNP [dm6]	T	C	1.981e^-4	0.586	INTRON Zasp67
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	1.982e^-4	0.586	SPLICE_SITE_REGION CG6293 INTRON CG6293
X	11438799	X_11438799_SNP [dm3] X_11544766_SNP [dm6]	G	A	1.983e^-4	0.586	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7728492	2R_7728492_SNP [dm3] 2R_11840987_SNP [dm6]	G	A	1.985e^-4	0.586	UPSTREAM CG34229 INTERGENIC
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	1.993e^-4	0.586	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	4020549	2L_4020549_SNP [dm3] 2L_4020549_SNP [dm6]	A	G	1.996e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9109752	2R_9109752_SNP [dm3] 2R_13222247_SNP [dm6]	C	T	1.996e^-4	0.586	UTR_5_PRIME Fsn UPSTREAM Dp INTRON Fsn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	2060093	2L_2060093_SNP [dm3] 2L_2060093_SNP [dm6]	G	A	1.999e^-4	0.586	INTRON dpr3
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	2.002e^-4	0.586	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14299099	3R_14299099_SNP [dm3] 3R_18473377_SNP [dm6]	T	A	2.005e^-4	0.586	INTRON fru
X	15263090	X_15263090_SNP [dm3] X_15369057_SNP [dm6]	G	T	2.007e^-4	0.586	INTRON acj6
2L	16400351	2L_16400351_SNP [dm3] 2L_16400351_SNP [dm6]	G	T	2.009e^-4	0.586	UTR_3_PRIME CG5888
3L	16023399	3L_16023399_SNP [dm3] 3L_16030299_SNP [dm6]	A	T	2.012e^-4	0.586	UPSTREAM mir-4941 INTRON Notum	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16023339	3L_16023339_SNP [dm3] 3L_16030239_SNP [dm6]	G	A	2.013e^-4	0.586	SYNONYMOUS_CODING Notum UPSTREAM mir-4941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27408253	3R_27408253_SNP [dm3] 3R_31582531_SNP [dm6]	A	T	2.013e^-4	0.586	INTRON rod
3R	16472513	3R_16472513_SNP [dm3] 3R_20646791_SNP [dm6]	A	G	2.014e^-4	0.586	SYNONYMOUS_CODING GluRIIE
2R	20362838	2R_20362838_SNP [dm3] 2R_24475315_SNP [dm6]	C	G	2.015e^-4	0.586	UPSTREAM CG16837 DOWNSTREAM CG3494 INTRON CG13579
X	1264453	X_1264453_SNP [dm3] X_1370420_SNP [dm6]	G	T	2.022e^-4	0.587	UPSTREAM ssx DOWNSTREAM CG14770 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11218638	3R_11218638_SNP [dm3] 3R_15392916_SNP [dm6]	T	C	2.026e^-4	0.587	INTRON Rbp
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	2.027e^-4	0.587	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	11365005	2L_11365005_SNP [dm3] 2L_11365005_SNP [dm6]	G	A	2.031e^-4	0.587	UPSTREAM salr INTRON salr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14962685	2L_14962685_SNP [dm3] 2L_14962685_SNP [dm6]	T	C	2.035e^-4	0.587	INTRON CG42313
3L	2796940	3L_2796940_SNP [dm3] 3L_2796940_SNP [dm6]	A	T	2.043e^-4	0.587	INTRON CG43444
3R	8775774	3R_8775774_SNP [dm3] 3R_12950052_SNP [dm6]	C	G	2.048e^-4	0.587	UTR_3_PRIME grsm
2R	17078662	2R_17078662_SNP [dm3] 2R_21191157_SNP [dm6]	G	A	2.050e^-4	0.587	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12509505	3L_12509505_SNP [dm3] 3L_12516405_SNP [dm6]	A	T	2.051e^-4	0.587	INTRON tral	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14236438	2L_14236438_SNP [dm3] 2L_14236438_SNP [dm6]	T	A	2.055e^-4	0.587	DOWNSTREAM CR44728 INTERGENIC
2L	22005706	2L_22005706_SNP [dm3] 2L_22005706_SNP [dm6]	T	A	2.064e^-4	0.587	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7036842	2L_7036842_SNP [dm3] 2L_7036842_SNP [dm6]	C	T	2.068e^-4	0.587	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266 UPSTREAM milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14232440	2L_14232440_SNP [dm3] 2L_14232440_SNP [dm6]	T	C	2.069e^-4	0.587	INTRON Dyrk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13840204	2L_13840204_SNP [dm3] 2L_13840204_SNP [dm6]	C	T	2.071e^-4	0.587	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12958477	2L_12958477_SNP [dm3] 2L_12958477_SNP [dm6]	G	T	2.072e^-4	0.587	INTERGENIC
3L	7872210	3L_7872210_SNP [dm3] 3L_7879110_SNP [dm6]	G	A	2.073e^-4	0.587	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11611602	2R_11611602_SNP [dm3] 2R_15724097_SNP [dm6]	C	A	2.074e^-4	0.587	INTERGENIC
3L	5343409	3L_5343409_SNP [dm3] 3L_5350309_SNP [dm6]	C	A	2.080e^-4	0.587	INTRON lama
2L	10442961	2L_10442961_SNP [dm3] 2L_10442961_SNP [dm6]	G	A	2.089e^-4	0.587	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18576732	2L_18576732_SNP [dm3] 2L_18576732_SNP [dm6]	G	A	2.091e^-4	0.587	INTRON Pde11
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	2.099e^-4	0.587	INTRON fz2
3L	18300087	3L_18300087_SNP [dm3] 3L_18306987_SNP [dm6]	C	T	2.100e^-4	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	2.102e^-4	0.587	INTRON Rh7
2L	14459312	2L_14459312_SNP [dm3] 2L_14459312_SNP [dm6]	T	A	2.104e^-4	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	2.114e^-4	0.587	INTERGENIC
3R	12678879	3R_12678879_SNP [dm3] 3R_16853157_SNP [dm6]	C	A	2.122e^-4	0.587	INTRON iab-8 & 1 other EXON iab-4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11919181	2L_11919181_SNP [dm3] 2L_11919181_SNP [dm6]	T	A	2.123e^-4	0.587	INTRON Pde1c
3R	16472573	3R_16472573_DEL [dm3] 3R_20646851_DEL [dm6]	TGAGTTT	AA	2.124e^-4	0.587	INTRON GluRIIE
2L	13822658	2L_13822658_SNP [dm3] 2L_13822658_SNP [dm6]	G	A	2.127e^-4	0.587	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16696832	3R_16696832_SNP [dm3] 3R_20871110_SNP [dm6]	T	C	2.129e^-4	0.587	INTRON TotA
2L	14756160	2L_14756160_SNP [dm3] 2L_14756160_SNP [dm6]	A	T	2.130e^-4	0.587	INTERGENIC
3R	6545196	3R_6545196_DEL [dm3] 3R_10719474_DEL [dm6]	CTTCTCC	C	2.132e^-4	0.587	INTERGENIC
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	2.134e^-4	0.587	INTRON salm
3L	11199005	3L_11199005_SNP [dm3] 3L_11205905_SNP [dm6]	C	T	2.139e^-4	0.587	UTR_5_PRIME Plod DOWNSTREAM Ube3a INTRON Plod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8176481	2R_8176481_SNP [dm3] 2R_12288976_SNP [dm6]	C	T	2.141e^-4	0.587	INTRON CG42700
3L	7024384	3L_7024384_SNP [dm3] 3L_7031284_SNP [dm6]	T	C	2.142e^-4	0.587	INTRON Mp
3R	6582569	3R_6582569_SNP [dm3] 3R_10756847_SNP [dm6]	A	T	2.142e^-4	0.587	SYNONYMOUS_CODING CG31272 EXON CR45015
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	2.146e^-4	0.587	INTRON CG13670	TF binding site mE1_TFBS_cad
2L	21941116	2L_21941116_SNP [dm3] 2L_21941116_SNP [dm6]	A	G	2.158e^-4	0.587	INTERGENIC
X	11995847	X_11995847_SNP [dm3] X_12101814_SNP [dm6]	T	C	2.163e^-4	0.587	INTRON CR43960 & 1 other
3R	16145881	3R_16145881_SNP [dm3] 3R_20320159_SNP [dm6]	C	T	2.165e^-4	0.587	INTRON CG42668
2L	1191191	2L_1191191_SNP [dm3] 2L_1191191_SNP [dm6]	G	A	2.167e^-4	0.587	INTRON CG5001
X	18133623	X_18133623_SNP [dm3] X_18239590_SNP [dm6]	A	G	2.169e^-4	0.587	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	14102655	2L_14102655_SNP [dm3] 2L_14102655_SNP [dm6]	A	G	2.171e^-4	0.587	INTERGENIC
X	1269358	X_1269358_DEL [dm3] X_1375325_DEL [dm6]	TAGTTTTTTTGCG...	A	2.176e^-4	0.587	UPSTREAM AMPKalpha DOWNSTREAM ssx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	1270950	X_1270950_SNP [dm3] X_1376917_SNP [dm6]	C	T	2.176e^-4	0.587	SYNONYMOUS_CODING AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16472571	3R_16472571_SNP [dm3] 3R_20646849_SNP [dm6]	A	G	2.179e^-4	0.587	INTRON GluRIIE
3R	7773277	3R_7773277_SNP [dm3] 3R_11947555_SNP [dm6]	T	A	2.181e^-4	0.587	UTR_5_PRIME Cad87A	TF binding site BDTNP1_TFBS_dl
2L	15816584	2L_15816584_SNP [dm3] 2L_15816584_SNP [dm6]	G	A	2.182e^-4	0.587	INTERGENIC
3L	18276631	3L_18276631_SNP [dm3] 3L_18283531_SNP [dm6]	C	A	2.187e^-4	0.587	INTERGENIC
2L	14423112	2L_14423112_SNP [dm3] 2L_14423112_SNP [dm6]	G	A	2.191e^-4	0.587	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9788433	3L_9788433_SNP [dm3] 3L_9795333_SNP [dm6]	C	T	2.193e^-4	0.587	INTRON Zasp67
3R	5494981	3R_5494981_SNP [dm3] 3R_9669259_SNP [dm6]	C	T	2.197e^-4	0.587	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
2R	7439128	2R_7439128_SNP [dm3] 2R_11551623_SNP [dm6]	G	A	2.202e^-4	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12086762	2R_12086762_SNP [dm3] 2R_16199257_SNP [dm6]	A	G	2.205e^-4	0.587	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark	TF binding site mE1_TFBS_cad
2L	6825380	2L_6825380_SNP [dm3] 2L_6825380_SNP [dm6]	T	A	2.205e^-4	0.587	INTRON sens-2
3R	5304629	3R_5304629_SNP [dm3] 3R_9478907_SNP [dm6]	A	C	2.205e^-4	0.587	INTRON CG16779
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	2.207e^-4	0.587	INTRON salm
3R	16472530	3R_16472530_SNP [dm3] 3R_20646808_SNP [dm6]	A	G	2.213e^-4	0.587	SYNONYMOUS_CODING GluRIIE
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	2.219e^-4	0.587	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13822626	2L_13822626_SNP [dm3] 2L_13822626_SNP [dm6]	A	G	2.220e^-4	0.587	INTRON b	TF binding site mE1_TFBS_cad
2L	13822642	2L_13822642_INS [dm3] 2L_13822642_INS [dm6]	A	AG	2.220e^-4	0.587	INTRON b	TF binding site mE1_TFBS_cad
2L	15442267	2L_15442267_SNP [dm3] 2L_15442267_SNP [dm6]	A	C	2.224e^-4	0.587	EXON CR44862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6240717	3L_6240717_SNP [dm3] 3L_6247617_SNP [dm6]	T	C	2.227e^-4	0.587	INTRON Best2
2R	11611538	2R_11611538_SNP [dm3] 2R_15724033_SNP [dm6]	A	G	2.228e^-4	0.587	INTERGENIC
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	2.228e^-4	0.587	INTRON nAChRalpha3
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	2.229e^-4	0.587	INTRON Cad87A
X	19662292	X_19662292_SNP [dm3] X_19768259_SNP [dm6]	G	A	2.235e^-4	0.588	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13612848	X_13612848_SNP [dm3] X_13718815_SNP [dm6]	A	G	2.250e^-4	0.588	UTR_3_PRIME CG9941 UPSTREAM CG9940 DOWNSTREAM NnaD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5281732	3R_5281732_SNP [dm3] 3R_9456010_SNP [dm6]	T	C	2.251e^-4	0.588	NON_SYNONYMOUS_CODING GstZ1 DOWNSTREAM ps & 1 other	TF binding site BDTNP1_TFBS_dl
3R	6549152	3R_6549152_SNP [dm3] 3R_10723430_SNP [dm6]	A	T	2.253e^-4	0.588	INTERGENIC
2L	14420235	2L_14420235_SNP [dm3] 2L_14420235_SNP [dm6]	C	A	2.256e^-4	0.588	INTERGENIC
2R	8072295	2R_8072295_SNP [dm3] 2R_12184790_SNP [dm6]	A	G	2.257e^-4	0.588	NON_SYNONYMOUS_CODING CG33964 UTR_3_PRIME CG13175 UPSTREAM SmF & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7160068	3R_7160068_SNP [dm3] 3R_11334346_SNP [dm6]	T	A	2.259e^-4	0.588	UPSTREAM pros INTRON pros
3R	11271363	3R_11271363_SNP [dm3] 3R_15445641_SNP [dm6]	T	C	2.260e^-4	0.588	INTRON AdamTS-A
2R	6726340	2R_6726340_SNP [dm3] 2R_10838835_SNP [dm6]	T	A	2.263e^-4	0.588	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11807367	2R_11807367_SNP [dm3] 2R_15919862_SNP [dm6]	A	G	2.265e^-4	0.588	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20968253	2L_20968253_SNP [dm3] 2L_20968253_SNP [dm6]	A	T	2.269e^-4	0.589	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	16781673	X_16781673_SNP [dm3] X_16887640_SNP [dm6]	C	A	2.281e^-4	0.591	SYNONYMOUS_CODING CG4880	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3L	1725692	3L_1725692_SNP [dm3] 3L_1725692_SNP [dm6]	A	T	2.285e^-4	0.591	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
X	17300696	X_17300696_SNP [dm3] X_17406663_SNP [dm6]	T	A	2.289e^-4	0.591	INTERGENIC
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	2.295e^-4	0.592	INTRON plum
2L	11469389	2L_11469389_SNP [dm3] 2L_11469389_SNP [dm6]	A	G	2.298e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17461993	3R_17461993_SNP [dm3] 3R_21636271_SNP [dm6]	T	C	2.302e^-4	0.592	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3917648	2L_3917648_SNP [dm3] 2L_3917648_SNP [dm6]	C	T	2.309e^-4	0.592	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_cad
2L	2612175	2L_2612175_SNP [dm3] 2L_2612175_SNP [dm6]	C	G	2.310e^-4	0.592	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	2.310e^-4	0.592	INTRON salm
3R	10270525	3R_10270525_SNP [dm3] 3R_14444803_SNP [dm6]	C	T	2.318e^-4	0.593	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17670911	3R_17670911_SNP [dm3] 3R_21845189_SNP [dm6]	C	A	2.335e^-4	0.593	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
3L	9788348	3L_9788348_SNP [dm3] 3L_9795248_SNP [dm6]	G	A	2.337e^-4	0.593	INTRON Zasp67
3L	9788372	3L_9788372_SNP [dm3] 3L_9795272_SNP [dm6]	G	A	2.337e^-4	0.593	INTRON Zasp67
2R	11820299	2R_11820299_SNP [dm3] 2R_15932794_SNP [dm6]	A	G	2.340e^-4	0.593	SYNONYMOUS_CODING Iap2 UPSTREAM bdg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	20034013	3L_20034013_SNP [dm3] 3L_20040913_SNP [dm6]	C	T	2.347e^-4	0.593	INTERGENIC
3L	9858677	3L_9858677_SNP [dm3] 3L_9865577_SNP [dm6]	T	C	2.355e^-4	0.593	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
3R	3831916	3R_3831916_SNP [dm3] 3R_8006194_SNP [dm6]	A	C	2.358e^-4	0.593	DOWNSTREAM CG2698 INTRON CG2767
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	2.358e^-4	0.593	INTRON fz2
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	2.358e^-4	0.593	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2R	19456879	2R_19456879_SNP [dm3] 2R_23569356_SNP [dm6]	T	A	2.365e^-4	0.593	INTRON apt	TF binding site BDTNP1_TFBS_dl
2L	2612324	2L_2612324_SNP [dm3] 2L_2612324_SNP [dm6]	G	C	2.366e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19617956	3R_19617956_SNP [dm3] 3R_23792234_SNP [dm6]	G	C	2.371e^-4	0.593	INTRON mbc
2L	16564964	2L_16564964_SNP [dm3] 2L_16564964_SNP [dm6]	C	A	2.377e^-4	0.593	INTRON CG42389
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	2.378e^-4	0.593	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7801534	3R_7801534_SNP [dm3] 3R_11975812_SNP [dm6]	C	G	2.380e^-4	0.593	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	6194751	2L_6194751_SNP [dm3] 2L_6194751_SNP [dm6]	T	G	2.382e^-4	0.593	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3R	6538432	3R_6538432_DEL [dm3] 3R_10712710_DEL [dm6]	CC	C	2.384e^-4	0.593	INTERGENIC
2L	8708509	2L_8708509_SNP [dm3] 2L_8708509_SNP [dm6]	G	C	2.385e^-4	0.593	UTR_5_PRIME Hnf4 DOWNSTREAM CG9314	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	2.395e^-4	0.593	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14956560	2L_14956560_SNP [dm3] 2L_14956560_SNP [dm6]	T	C	2.397e^-4	0.593	INTRON CG42313
2L	2929509	2L_2929509_SNP [dm3] 2L_2929509_SNP [dm6]	C	T	2.411e^-4	0.593	INTRON lilli
3R	15093201	3R_15093201_DEL [dm3] 3R_19267479_DEL [dm6]	AATACTGTTA	A	2.412e^-4	0.593	INTERGENIC
3L	9788434	3L_9788434_SNP [dm3] 3L_9795334_SNP [dm6]	C	T	2.413e^-4	0.593	INTRON Zasp67
2L	13843575	2L_13843575_SNP [dm3] 2L_13843575_SNP [dm6]	G	A	2.413e^-4	0.593	DOWNSTREAM CG8997 INTRON CenG1A & 1 other
2L	4272937	2L_4272937_SNP [dm3] 2L_4272937_SNP [dm6]	G	A	2.415e^-4	0.593	INTERGENIC
2R	4038604	2R_4038604_SNP [dm3] 2R_8151099_SNP [dm6]	A	T	2.416e^-4	0.593	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	2.418e^-4	0.593	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13822639	2L_13822639_SNP [dm3] 2L_13822639_SNP [dm6]	C	A	2.423e^-4	0.593	INTRON b	TF binding site mE1_TFBS_cad
2L	484345	2L_484345_SNP [dm3] 2L_484345_SNP [dm6]	C	T	2.424e^-4	0.593	INTRON ush	TF binding site BDTNP1_TFBS_da
3R	14299123	3R_14299123_INS [dm3] 3R_18473401_INS [dm6]	T	TAA	2.424e^-4	0.593	INTRON fru
3R	14299125	3R_14299125_SNP [dm3] 3R_18473403_SNP [dm6]	G	A	2.424e^-4	0.593	INTRON fru
2L	15411425	2L_15411425_SNP [dm3] 2L_15411425_SNP [dm6]	T	G	2.427e^-4	0.593	INTERGENIC
3R	7821020	3R_7821020_SNP [dm3] 3R_11995298_SNP [dm6]	G	A	2.434e^-4	0.593	INTRON Tk	TF binding site mE1_TFBS_chinmo
3R	6495098	3R_6495098_SNP [dm3] 3R_10669376_SNP [dm6]	T	C	2.437e^-4	0.593	INTERGENIC
3L	1720447	3L_1720447_SNP [dm3] 3L_1720447_SNP [dm6]	C	T	2.443e^-4	0.593	DOWNSTREAM CG18171 INTRON drpr
3R	6548593	3R_6548593_SNP [dm3] 3R_10722871_SNP [dm6]	A	T	2.455e^-4	0.593	INTERGENIC
X	15432083	X_15432083_SNP [dm3] X_15538050_SNP [dm6]	G	A	2.458e^-4	0.593	INTRON Ac13E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1753195	2L_1753195_SNP [dm3] 2L_1753195_SNP [dm6]	A	G	2.464e^-4	0.593	DOWNSTREAM CG17648 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8410183	2R_8410183_SNP [dm3] 2R_12522678_SNP [dm6]	A	T	2.466e^-4	0.593	NON_SYNONYMOUS_CODING CG33632
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	2.473e^-4	0.593	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	2.479e^-4	0.593	INTRON Cad87A
3R	11719639	3R_11719639_SNP [dm3] 3R_15893917_SNP [dm6]	C	A	2.479e^-4	0.593	INTRON CG14877
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	2.481e^-4	0.593	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	19232914	2L_19232914_SNP [dm3] 2L_19232914_SNP [dm6]	G	C	2.483e^-4	0.593	INTERGENIC
2L	13842407	2L_13842407_SNP [dm3] 2L_13842407_SNP [dm6]	G	A	2.485e^-4	0.593	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
X	8631644	X_8631644_SNP [dm3] X_8737611_SNP [dm6]	G	C	2.486e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	11346080	2L_11346080_SNP [dm3] 2L_11346080_SNP [dm6]	A	G	2.494e^-4	0.593	INTERGENIC
X	1277615	X_1277615_SNP [dm3] X_1383582_SNP [dm6]	T	G	2.495e^-4	0.593	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo
2L	1645252	2L_1645252_SNP [dm3] 2L_1645252_SNP [dm6]	G	A	2.501e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12507289	3L_12507289_DEL [dm3] 3L_12514189_DEL [dm6]	GG	G	2.503e^-4	0.593	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	2.505e^-4	0.593	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11807047	2R_11807047_SNP [dm3] 2R_15919542_SNP [dm6]	G	A	2.507e^-4	0.593	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8306402	2R_8306402_SNP [dm3] 2R_12418897_SNP [dm6]	A	G	2.510e^-4	0.593	DOWNSTREAM CG42782 & 2 others INTERGENIC
2L	11141398	2L_11141398_SNP [dm3] 2L_11141398_SNP [dm6]	A	C	2.515e^-4	0.593	INTRON Gyc32E
2R	9583786	2R_9583786_SNP [dm3] 2R_13696281_SNP [dm6]	A	G	2.517e^-4	0.593	INTRON fas
3L	12203078	3L_12203078_SNP [dm3] 3L_12209978_SNP [dm6]	A	G	2.520e^-4	0.593	UTR_3_PRIME app INTRON app
X	3383841	X_3383841_SNP [dm3] X_3489808_SNP [dm6]	T	G	2.520e^-4	0.593	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	7939997	3R_7939997_SNP [dm3] 3R_12114275_SNP [dm6]	C	A	2.521e^-4	0.593	INTERGENIC
X	18826382	X_18826382_SNP [dm3] X_18932349_SNP [dm6]	A	G	2.521e^-4	0.593	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6514731	3R_6514731_SNP [dm3] 3R_10689009_SNP [dm6]	C	G	2.521e^-4	0.593	INTRON Skeletor
X	20309017	X_20309017_SNP [dm3] X_20437990_SNP [dm6]	T	C	2.523e^-4	0.593	INTRON CG1695
X	16160510	X_16160510_SNP [dm3] X_16266477_SNP [dm6]	T	G	2.525e^-4	0.593	SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	2.526e^-4	0.593	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12149873	X_12149873_SNP [dm3] X_12255840_SNP [dm6]	G	C	2.527e^-4	0.593	INTRON Ten-a
2L	2539428	2L_2539428_SNP [dm3] 2L_2539428_SNP [dm6]	A	T	2.531e^-4	0.593	INTERGENIC
2L	1185481	2L_1185481_SNP [dm3] 2L_1185481_SNP [dm6]	A	G	2.532e^-4	0.593	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11605319	2R_11605319_SNP [dm3] 2R_15717814_SNP [dm6]	A	C	2.533e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1848084	3L_1848084_SNP [dm3] 3L_1848084_SNP [dm6]	G	A	2.535e^-4	0.593	INTERGENIC
2L	6943827	2L_6943827_SNP [dm3] 2L_6943827_SNP [dm6]	T	G	2.536e^-4	0.593	UTR_3_PRIME CG10158	TF binding site mE1_TFBS_cad
2L	14975074	2L_14975074_SNP [dm3] 2L_14975074_SNP [dm6]	A	T	2.553e^-4	0.593	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	2.556e^-4	0.593	INTERGENIC
3L	13654966	3L_13654966_SNP [dm3] 3L_13661866_SNP [dm6]	T	C	2.556e^-4	0.593	INTRON bru-3
2R	7728122	2R_7728122_INS [dm3] 2R_11840617_INS [dm6]	T	TT	2.558e^-4	0.593	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	2.560e^-4	0.593	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5327578	3L_5327578_DEL [dm3] 3L_5334478_DEL [dm6]	GG	G	2.563e^-4	0.593	UPSTREAM CR45742 INTERGENIC
3R	17174165	3R_17174165_SNP [dm3] 3R_21348443_SNP [dm6]	T	A	2.564e^-4	0.593	NON_SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	2.565e^-4	0.593	INTRON Fhos
3L	12052471	3L_12052471_SNP [dm3] 3L_12059371_SNP [dm6]	G	A	2.582e^-4	0.593	INTRON rols
2R	11473253	2R_11473253_SNP [dm3] 2R_15585748_SNP [dm6]	A	T	2.586e^-4	0.593	INTERGENIC
2L	18750592	2L_18750592_SNP [dm3] 2L_18750592_SNP [dm6]	T	A	2.600e^-4	0.593	INTERGENIC
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	2.600e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3895098	X_3895098_SNP [dm3] X_4001065_SNP [dm6]	A	G	2.600e^-4	0.593	DOWNSTREAM CR43298 INTERGENIC
X	12533985	X_12533985_SNP [dm3] X_12639952_SNP [dm6]	G	A	2.604e^-4	0.593	INTRON Tomosyn
3R	6545163	3R_6545163_INS [dm3] 3R_10719441_INS [dm6]	G	TTGACCTTT	2.605e^-4	0.593	INTERGENIC
2L	13822634	2L_13822634_SNP [dm3] 2L_13822634_SNP [dm6]	T	G	2.607e^-4	0.593	INTRON b	TF binding site mE1_TFBS_cad
3R	19893962	3R_19893962_SNP [dm3] 3R_24068240_SNP [dm6]	G	A	2.611e^-4	0.593	INTRON 4EHP
3R	2097470	3R_2097470_SNP [dm3] 3R_6271748_SNP [dm6]	C	T	2.615e^-4	0.593	INTERGENIC
3R	2139675	3R_2139675_SNP [dm3] 3R_6313953_SNP [dm6]	C	T	2.615e^-4	0.593	INTRON Osi17
3R	2139682	3R_2139682_SNP [dm3] 3R_6313960_SNP [dm6]	G	T	2.615e^-4	0.593	INTRON Osi17
3R	15001326	3R_15001326_SNP [dm3] 3R_19175604_SNP [dm6]	C	T	2.618e^-4	0.593	INTERGENIC
2L	3590178	2L_3590178_DEL [dm3] 2L_3590178_DEL [dm6]	CA	C	2.627e^-4	0.593	EXON CR43823
2L	4319292	2L_4319292_SNP [dm3] 2L_4319292_SNP [dm6]	G	T	2.628e^-4	0.593	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9251810	3R_9251810_DEL [dm3] 3R_13426088_DEL [dm6]	TT	T	2.628e^-4	0.593	UPSTREAM Act87E INTRON Act87E EXON CR45591	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8204955	3R_8204955_SNP [dm3] 3R_12379233_SNP [dm6]	A	T	2.629e^-4	0.593	UTR_3_PRIME GstD7 UPSTREAM GstD8
X	15328018	X_15328018_SNP [dm3] X_15433985_SNP [dm6]	G	A	2.639e^-4	0.593	INTRON Cngl	TF binding site mE1_TFBS_inv
2R	8607331	2R_8607331_SNP [dm3] 2R_12719826_SNP [dm6]	A	G	2.640e^-4	0.593	INTRON CG42663
2R	8207124	2R_8207124_SNP [dm3] 2R_12319619_SNP [dm6]	G	A	2.640e^-4	0.593	DOWNSTREAM CR44316 INTERGENIC
2R	3105380	2R_3105380_SNP [dm3] 2R_7217875_SNP [dm6]	G	A	2.643e^-4	0.593	INTRON pk	TF binding site mE1_TFBS_cad
X	1268847	X_1268847_SNP [dm3] X_1374814_SNP [dm6]	G	A	2.647e^-4	0.593	UTR_3_PRIME ssx UPSTREAM AMPKalpha DOWNSTREAM ssx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14423078	2L_14423078_SNP [dm3] 2L_14423078_SNP [dm6]	A	T	2.647e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3872611	2R_3872611_SNP [dm3] 2R_7985106_SNP [dm6]	G	A	2.654e^-4	0.593	NON_SYNONYMOUS_CODING ACC
2L	11010697	2L_11010697_SNP [dm3] 2L_11010697_SNP [dm6]	C	A	2.657e^-4	0.593	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	5630257	3L_5630257_SNP [dm3] 3L_5637157_SNP [dm6]	A	G	2.661e^-4	0.593	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1368827	2R_1368827_SNP [dm3] 2R_5481322_SNP [dm6]	G	T	2.664e^-4	0.593	INTRON CG30440	transposable element FlyBase
3L	10842821	3L_10842821_SNP [dm3] 3L_10849721_SNP [dm6]	T	C	2.666e^-4	0.593	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	9858667	3L_9858667_SNP [dm3] 3L_9865567_SNP [dm6]	T	C	2.669e^-4	0.593	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
X	11843065	X_11843065_SNP [dm3] X_11949032_SNP [dm6]	C	A	2.669e^-4	0.593	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17092697	2L_17092697_SNP [dm3] 2L_17092697_SNP [dm6]	A	C	2.670e^-4	0.593	INTERGENIC
2L	14435714	2L_14435714_INS [dm3] 2L_14435714_INS [dm6]	G	GT	2.671e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12723393	3R_12723393_SNP [dm3] 3R_16897671_SNP [dm6]	T	A	2.678e^-4	0.593	INTRON iab-8 EXON CR43617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18576704	2L_18576704_INS [dm3] 2L_18576704_INS [dm6]	A	AGTGAATACAAA...	2.679e^-4	0.593	INTRON Pde11
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	2.685e^-4	0.593	UPSTREAM ppk27 INTRON CG32264
3L	1437159	3L_1437159_SNP [dm3] 3L_1437159_SNP [dm6]	G	A	2.688e^-4	0.593	INTRON Ptp61F & 1 other
2R	8179555	2R_8179555_SNP [dm3] 2R_12292050_SNP [dm6]	T	G	2.695e^-4	0.593	INTRON CG42700
2L	11919785	2L_11919785_SNP [dm3] 2L_11919785_SNP [dm6]	T	A	2.695e^-4	0.593	INTRON Pde1c
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	2.698e^-4	0.593	INTRON salm	TF binding site mE1_TFBS_inv
3R	26565079	3R_26565079_SNP [dm3] 3R_30739357_SNP [dm6]	G	A	2.703e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2480478	3L_2480478_SNP [dm3] 3L_2480478_SNP [dm6]	C	T	2.706e^-4	0.593	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4074270	2L_4074270_SNP [dm3] 2L_4074270_SNP [dm6]	A	G	2.709e^-4	0.593	DOWNSTREAM CR44984 INTRON ed
X	15340297	X_15340297_SNP [dm3] X_15446264_SNP [dm6]	C	G	2.715e^-4	0.593	UTR_3_PRIME Scamp
2L	9778256	2L_9778256_SNP [dm3] 2L_9778256_SNP [dm6]	C	T	2.718e^-4	0.593	INTERGENIC
3L	2796907	3L_2796907_SNP [dm3] 3L_2796907_SNP [dm6]	C	T	2.719e^-4	0.593	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	2221938	3R_2221938_SNP [dm3] 3R_6396216_SNP [dm6]	C	T	2.728e^-4	0.593	INTRON Dmtn
2L	5717469	2L_5717469_SNP [dm3] 2L_5717469_SNP [dm6]	T	A	2.729e^-4	0.593	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	18110720	3L_18110720_DEL [dm3] 3L_18117620_DEL [dm6]	AA	A	2.730e^-4	0.593	UTR_3_PRIME CG32195 INTRON CG7341
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	2.732e^-4	0.593	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11438861	X_11438861_SNP [dm3] X_11544828_SNP [dm6]	G	T	2.733e^-4	0.593	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14154788	3L_14154788_SNP [dm3] 3L_14161688_SNP [dm6]	G	C	2.737e^-4	0.593	INTERGENIC	regulatory region REDfly_CRMs
2R	11515915	2R_11515915_SNP [dm3] 2R_15628410_SNP [dm6]	A	T	2.737e^-4	0.593	INTRON CG42524
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	2.751e^-4	0.593	INTRON CG33144
2L	18576720	2L_18576720_SNP [dm3] 2L_18576720_SNP [dm6]	A	T	2.754e^-4	0.593	INTRON Pde11
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	2.755e^-4	0.593	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14916955	2L_14916955_SNP [dm3] 2L_14916955_SNP [dm6]	G	C	2.755e^-4	0.593	INTRON CG42313
3L	6734976	3L_6734976_SNP [dm3] 3L_6741876_SNP [dm6]	T	G	2.760e^-4	0.593	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	1437168	3L_1437168_SNP [dm3] 3L_1437168_SNP [dm6]	A	G	2.761e^-4	0.593	INTRON Ptp61F & 1 other
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	2.763e^-4	0.593	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	2612098	2L_2612098_SNP [dm3] 2L_2612098_SNP [dm6]	A	T	2.767e^-4	0.593	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4289438	3L_4289438_SNP [dm3] 3L_4289438_SNP [dm6]	C	T	2.768e^-4	0.593	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo
3L	11822692	3L_11822692_SNP [dm3] 3L_11829592_SNP [dm6]	C	T	2.775e^-4	0.593	INTRON CycA & 1 other
3R	25339792	3R_25339792_SNP [dm3] 3R_29514070_SNP [dm6]	G	A	2.781e^-4	0.593	INTERGENIC
3R	27076856	3R_27076856_SNP [dm3] 3R_31251134_SNP [dm6]	C	T	2.784e^-4	0.593	INTRON qless	TF binding site mE1_TFBS_bab1
2L	13842794	2L_13842794_SNP [dm3] 2L_13842794_SNP [dm6]	C	T	2.792e^-4	0.593	DOWNSTREAM CG33306 INTRON CenG1A
3R	7975272	3R_7975272_SNP [dm3] 3R_12149550_SNP [dm6]	C	T	2.793e^-4	0.593	INTRON dpr15
3L	11740955	3L_11740955_DEL [dm3] 3L_11747855_DEL [dm6]	ACGTATT	A	2.794e^-4	0.593	INTRON CG6024
3L	11740967	3L_11740967_INS [dm3] 3L_11747867_INS [dm6]	T	TTATTCATATTTATT...	2.794e^-4	0.593	INTRON CG6024
3L	11740969	3L_11740969_SNP [dm3] 3L_11747869_SNP [dm6]	C	T	2.794e^-4	0.593	INTRON CG6024
3R	7952376	3R_7952376_SNP [dm3] 3R_12126654_SNP [dm6]	A	G	2.796e^-4	0.593	INTRON CG4702
2L	17208738	2L_17208738_SNP [dm3] 2L_17208738_SNP [dm6]	T	A	2.807e^-4	0.593	INTRON beat-IIIc
2L	15766178	2L_15766178_SNP [dm3] 2L_15766178_SNP [dm6]	A	T	2.808e^-4	0.593	UTR_3_PRIME CG3793 & 1 other DOWNSTREAM wek & 1 other
3L	12079171	3L_12079171_SNP [dm3] 3L_12086071_SNP [dm6]	C	T	2.812e^-4	0.593	INTERGENIC
3L	5706345	3L_5706345_SNP [dm3] 3L_5713245_SNP [dm6]	A	T	2.813e^-4	0.593	UPSTREAM CG44521 INTRON sif
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	2.814e^-4	0.593	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
3L	13116862	3L_13116862_SNP [dm3] 3L_13123762_SNP [dm6]	C	T	2.815e^-4	0.593	INTERGENIC
2L	15200116	2L_15200116_SNP [dm3] 2L_15200116_SNP [dm6]	T	G	2.817e^-4	0.593	UTR_5_PRIME CG4168
2L	13680862	2L_13680862_SNP [dm3] 2L_13680862_SNP [dm6]	C	T	2.820e^-4	0.593	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	2.825e^-4	0.593	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8181352	2R_8181352_DEL [dm3] 2R_12293847_DEL [dm6]	AC	A	2.828e^-4	0.593	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21586420	3R_21586420_SNP [dm3] 3R_25760698_SNP [dm6]	T	G	2.829e^-4	0.593	UPSTREAM LpR1 INTRON LpR1
3L	11037557	3L_11037557_SNP [dm3] 3L_11044457_SNP [dm6]	C	G	2.832e^-4	0.593	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	15459172	2L_15459172_SNP [dm3] 2L_15459172_SNP [dm6]	G	A	2.839e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10130727	3L_10130727_SNP [dm3] 3L_10137627_SNP [dm6]	C	T	2.840e^-4	0.593	INTRON dpr6
3R	13618618	3R_13618618_SNP [dm3] 3R_17792896_SNP [dm6]	C	A	2.841e^-4	0.593	INTRON CG43102
3R	7737474	3R_7737474_SNP [dm3] 3R_11911752_SNP [dm6]	C	T	2.844e^-4	0.593	INTRON Cad87A
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	2.848e^-4	0.593	INTRON CG42663
3L	1850073	3L_1850073_SNP [dm3] 3L_1850073_SNP [dm6]	C	T	2.851e^-4	0.593	DOWNSTREAM CG13936 INTERGENIC
2R	8179587	2R_8179587_SNP [dm3] 2R_12292082_SNP [dm6]	A	G	2.853e^-4	0.593	INTRON CG42700
X	3010519	X_3010519_INS [dm3] X_3116486_INS [dm6]	G	GTG	2.853e^-4	0.593	INTRON kirre
3R	6565983	3R_6565983_SNP [dm3] 3R_10740261_SNP [dm6]	T	A	2.855e^-4	0.593	INTRON TkR86C
3R	6594070	3R_6594070_SNP [dm3] 3R_10768348_SNP [dm6]	G	T	2.857e^-4	0.593	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta	TF binding site mE1_TFBS_HSA
3R	6542668	3R_6542668_SNP [dm3] 3R_10716946_SNP [dm6]	T	C	2.857e^-4	0.593	INTERGENIC
2L	18576726	2L_18576726_SNP [dm3] 2L_18576726_SNP [dm6]	T	C	2.861e^-4	0.594	INTRON Pde11
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	2.865e^-4	0.594	INTRON Cad87A
2R	18699119	2R_18699119_SNP [dm3] 2R_22811614_SNP [dm6]	A	T	2.877e^-4	0.596	INTRON stl
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	2.888e^-4	0.596	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3L	5688496	3L_5688496_SNP [dm3] 3L_5695396_SNP [dm6]	C	T	2.892e^-4	0.596	INTRON sif
2L	1753190	2L_1753190_SNP [dm3] 2L_1753190_SNP [dm6]	C	A	2.895e^-4	0.596	DOWNSTREAM CG17648 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7747933	3R_7747933_SNP [dm3] 3R_11922211_SNP [dm6]	A	G	2.900e^-4	0.596	INTRON Cad87A
2R	18074138	2R_18074138_SNP [dm3] 2R_22186633_SNP [dm6]	G	A	2.911e^-4	0.596	SYNONYMOUS_CODING Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	2.913e^-4	0.596	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	2.914e^-4	0.596	INTRON fru
3R	8028018	3R_8028018_SNP [dm3] 3R_12202296_SNP [dm6]	G	A	2.915e^-4	0.596	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13092679	3R_13092679_INS [dm3] 3R_17266957_INS [dm6]	A	AAATGA	2.916e^-4	0.596	INTERGENIC
X	20501878	X_20501878_SNP [dm3] X_20630851_SNP [dm6]	G	C	2.926e^-4	0.596	INTERGENIC
2L	451707	2L_451707_SNP [dm3] 2L_451707_SNP [dm6]	G	T	2.928e^-4	0.596	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3R	16574206	3R_16574206_SNP [dm3] 3R_20748484_SNP [dm6]	T	C	2.928e^-4	0.596	NON_SYNONYMOUS_CODING Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	2.930e^-4	0.596	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	18576728	2L_18576728_SNP [dm3] 2L_18576728_SNP [dm6]	T	C	2.931e^-4	0.596	INTRON Pde11
3L	6627651	3L_6627651_SNP [dm3] 3L_6634551_SNP [dm6]	C	G	2.933e^-4	0.596	NON_SYNONYMOUS_CODING GluRIA
3R	5198176	3R_5198176_SNP [dm3] 3R_9372454_SNP [dm6]	C	T	2.937e^-4	0.596	NON_SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
2L	18074864	2L_18074864_SNP [dm3] 2L_18074864_SNP [dm6]	G	A	2.956e^-4	0.596	INTERGENIC
2L	18074913	2L_18074913_SNP [dm3] 2L_18074913_SNP [dm6]	T	A	2.956e^-4	0.596	INTERGENIC
X	6826851	X_6826851_SNP [dm3] X_6932818_SNP [dm6]	C	A	2.957e^-4	0.596	INTRON CG14431
2L	11919167	2L_11919167_SNP [dm3] 2L_11919167_SNP [dm6]	A	C	2.959e^-4	0.596	INTRON Pde1c
2L	6397256	2L_6397256_SNP [dm3] 2L_6397256_SNP [dm6]	T	A	2.959e^-4	0.596	UPSTREAM CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2075435	3R_2075435_SNP [dm3] 3R_6249713_SNP [dm6]	C	T	2.960e^-4	0.596	SYNONYMOUS_CODING Osi7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	6569164	3R_6569164_SNP [dm3] 3R_10743442_SNP [dm6]	C	T	2.961e^-4	0.596	INTRON TkR86C
3L	12462225	3L_12462225_SNP [dm3] 3L_12469125_SNP [dm6]	C	A	2.965e^-4	0.596	UTR_3_PRIME CG32102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	15328068	X_15328068_SNP [dm3] X_15434035_SNP [dm6]	T	C	2.969e^-4	0.596	INTRON Cngl	TF binding site mE1_TFBS_inv
2L	9691167	2L_9691167_SNP [dm3] 2L_9691167_SNP [dm6]	G	T	2.973e^-4	0.596	INTRON Pka-C1
3R	17364832	3R_17364832_SNP [dm3] 3R_21539110_SNP [dm6]	G	A	2.978e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	25231178	3R_25231178_SNP [dm3] 3R_29405456_SNP [dm6]	T	C	2.979e^-4	0.596	INTRON Ptp99A
X	1240904	X_1240904_SNP [dm3] X_1346871_SNP [dm6]	A	C	2.985e^-4	0.596	UPSTREAM Tsp2A & 1 other INTRON CG11418 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	4795686	2L_4795686_SNP [dm3] 2L_4795686_SNP [dm6]	G	C	2.986e^-4	0.596	DOWNSTREAM Clect27 INTRON CG3294
3R	10270553	3R_10270553_SNP [dm3] 3R_14444831_SNP [dm6]	A	T	2.989e^-4	0.596	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20920568	X_20920568_SNP [dm3] X_21049541_SNP [dm6]	A	C	2.991e^-4	0.596	DOWNSTREAM CG1518 & 1 other INTERGENIC
3L	10893620	3L_10893620_SNP [dm3] 3L_10900520_SNP [dm6]	A	G	3.000e^-4	0.596	INTERGENIC
2L	12143450	2L_12143450_SNP [dm3] 2L_12143450_SNP [dm6]	A	T	3.000e^-4	0.596	INTRON CG31760
2L	12143452	2L_12143452_SNP [dm3] 2L_12143452_SNP [dm6]	A	T	3.000e^-4	0.596	INTRON CG31760
3R	14299117	3R_14299117_SNP [dm3] 3R_18473395_SNP [dm6]	C	A	3.001e^-4	0.596	INTRON fru
3L	7692857	3L_7692857_SNP [dm3] 3L_7699757_SNP [dm6]	C	A	3.003e^-4	0.596	SYNONYMOUS_CODING Ank2 INTRON CG32373
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	3.006e^-4	0.596	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16504012	3R_16504012_SNP [dm3] 3R_20678290_SNP [dm6]	G	T	3.012e^-4	0.596	UPSTREAM CG4000 DOWNSTREAM CR45024 EXON CR43452	TF binding site mE1_TFBS_HSA
2R	8179522	2R_8179522_SNP [dm3] 2R_12292017_SNP [dm6]	G	C	3.016e^-4	0.596	INTRON CG42700
2L	22005727	2L_22005727_SNP [dm3] 2L_22005727_SNP [dm6]	C	T	3.017e^-4	0.596	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1270118	X_1270118_SNP [dm3] X_1376085_SNP [dm6]	C	A	3.017e^-4	0.596	SYNONYMOUS_CODING AMPKalpha DOWNSTREAM ssx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	6321577	X_6321577_SNP [dm3] X_6427544_SNP [dm6]	C	T	3.018e^-4	0.596	INTRON CG42340
X	15438735	X_15438735_SNP [dm3] X_15544702_SNP [dm6]	T	G	3.019e^-4	0.596	INTRON Ac13E
3R	22003939	3R_22003939_SNP [dm3] 3R_26178217_SNP [dm6]	G	T	3.026e^-4	0.596	INTRON CG31323
3R	2057645	3R_2057645_SNP [dm3] 3R_6231923_SNP [dm6]	T	A	3.029e^-4	0.596	INTERGENIC
3R	6505177	3R_6505177_SNP [dm3] 3R_10679455_SNP [dm6]	A	T	3.029e^-4	0.596	INTRON CG14688
2L	3880416	2L_3880416_SNP [dm3] 2L_3880416_SNP [dm6]	A	G	3.030e^-4	0.596	UPSTREAM capu INTRON capu
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	3.039e^-4	0.596	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2139673	3R_2139673_SNP [dm3] 3R_6313951_SNP [dm6]	G	T	3.039e^-4	0.596	INTRON Osi17
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	3.048e^-4	0.597	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2L	492723	2L_492723_SNP [dm3] 2L_492723_SNP [dm6]	G	A	3.064e^-4	0.598	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9054389	2R_9054389_SNP [dm3] 2R_13166884_SNP [dm6]	G	C	3.064e^-4	0.598	INTRON GLaz
2R	8207146	2R_8207146_SNP [dm3] 2R_12319641_SNP [dm6]	T	A	3.065e^-4	0.598	DOWNSTREAM CR44316 INTERGENIC
3L	19061520	3L_19061520_SNP [dm3] 3L_19068420_SNP [dm6]	A	T	3.066e^-4	0.598	UTR_3_PRIME Mkp3	TF binding site mE1_TFBS_cad
X	6315830	X_6315830_SNP [dm3] X_6421797_SNP [dm6]	A	C	3.068e^-4	0.598	INTERGENIC
2L	11198312	2L_11198312_SNP [dm3] 2L_11198312_SNP [dm6]	A	T	3.069e^-4	0.598	INTRON Ca-beta
2L	15732334	2L_15732334_SNP [dm3] 2L_15732334_SNP [dm6]	G	C	3.073e^-4	0.598	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11416243	3R_11416243_SNP [dm3] 3R_15590521_SNP [dm6]	G	A	3.076e^-4	0.598	INTERGENIC
2L	11450545	2L_11450545_SNP [dm3] 2L_11450545_SNP [dm6]	T	A	3.085e^-4	0.598	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11467783	2L_11467783_SNP [dm3] 2L_11467783_SNP [dm6]	C	A	3.088e^-4	0.598	INTERGENIC
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	3.093e^-4	0.598	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3125700	2L_3125700_SNP [dm3] 2L_3125700_SNP [dm6]	C	T	3.094e^-4	0.598	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1973912	3R_1973912_SNP [dm3] 3R_6148190_SNP [dm6]	C	A	3.095e^-4	0.598	INTERGENIC
2R	12851826	2R_12851826_SNP [dm3] 2R_16964321_SNP [dm6]	T	C	3.096e^-4	0.598	EXON CR44376
3L	19378294	3L_19378294_SNP [dm3] 3L_19385194_SNP [dm6]	A	G	3.104e^-4	0.598	INTRON CG32206
3R	17364859	3R_17364859_SNP [dm3] 3R_21539137_SNP [dm6]	G	A	3.105e^-4	0.598	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	10798033	X_10798033_SNP [dm3] X_10904000_SNP [dm6]	A	G	3.105e^-4	0.598	INTERGENIC
3R	21478200	3R_21478200_SNP [dm3] 3R_25652478_SNP [dm6]	A	G	3.109e^-4	0.598	DOWNSTREAM mir-92b & 1 other INTERGENIC
2L	15881983	2L_15881983_SNP [dm3] 2L_15881983_SNP [dm6]	T	A	3.111e^-4	0.598	DOWNSTREAM CG44475 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11769105	2L_11769105_SNP [dm3] 2L_11769105_SNP [dm6]	T	C	3.120e^-4	0.599	INTERGENIC
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	3.144e^-4	0.603	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	18156237	3R_18156237_SNP [dm3] 3R_22330515_SNP [dm6]	G	A	3.149e^-4	0.603	UTR_3_PRIME CG7080 UPSTREAM CG33721	TF binding site mE1_TFBS_cad
2L	6449351	2L_6449351_SNP [dm3] 2L_6449351_SNP [dm6]	A	T	3.153e^-4	0.603	UTR_3_PRIME retm UPSTREAM CG9527
2R	10813092	2R_10813092_SNP [dm3] 2R_14925587_SNP [dm6]	G	A	3.159e^-4	0.603	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	3.159e^-4	0.603	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
3L	5489092	3L_5489092_SNP [dm3] 3L_5495992_SNP [dm6]	A	C	3.163e^-4	0.603	INTERGENIC
2L	15200556	2L_15200556_SNP [dm3] 2L_15200556_SNP [dm6]	G	A	3.165e^-4	0.603	UPSTREAM CG4168 INTERGENIC
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	3.176e^-4	0.604	INTRON Sema-1a
3R	2144300	3R_2144300_SNP [dm3] 3R_6318578_SNP [dm6]	G	T	3.177e^-4	0.604	INTRON Osi17
X	16722191	X_16722191_SNP [dm3] X_16828158_SNP [dm6]	C	A	3.179e^-4	0.604	UPSTREAM CG13004 INTRON CG13004
2R	11379158	2R_11379158_SNP [dm3] 2R_15491653_SNP [dm6]	A	T	3.182e^-4	0.604	INTRON CG12964
2R	12790548	2R_12790548_SNP [dm3] 2R_16903043_SNP [dm6]	T	C	3.184e^-4	0.604	INTERGENIC
2L	5684125	2L_5684125_INS [dm3] 2L_5684125_INS [dm6]	C	CCC	3.188e^-4	0.604	INTERGENIC
X	13326025	X_13326025_SNP [dm3] X_13431992_SNP [dm6]	C	G	3.192e^-4	0.604	INTERGENIC
2L	14072560	2L_14072560_SNP [dm3] 2L_14072560_SNP [dm6]	G	T	3.194e^-4	0.604	INTRON nAChRalpha5
2L	12777932	2L_12777932_SNP [dm3] 2L_12777932_SNP [dm6]	G	C	3.199e^-4	0.604	INTERGENIC
2R	8196208	2R_8196208_SNP [dm3] 2R_12308703_SNP [dm6]	C	T	3.201e^-4	0.604	INTRON CG17739	TF binding site mE1_TFBS_chinmo
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	3.203e^-4	0.604	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	6590332	3R_6590332_SNP [dm3] 3R_10764610_SNP [dm6]	C	A	3.212e^-4	0.604	INTRON Cap-H2
X	18133593	X_18133593_SNP [dm3] X_18239560_SNP [dm6]	T	A	3.213e^-4	0.604	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	14512952	2R_14512952_SNP [dm3] 2R_18625447_SNP [dm6]	C	T	3.217e^-4	0.604	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19893967	3R_19893967_SNP [dm3] 3R_24068245_SNP [dm6]	C	T	3.221e^-4	0.604	INTRON 4EHP
2L	18576733	2L_18576733_SNP [dm3] 2L_18576733_SNP [dm6]	C	T	3.222e^-4	0.604	INTRON Pde11

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.846e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01804
In_3R_Mo	0.08681

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6266	0.0989

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1903 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7830448	2L_7830448_SNP [dm3] 2L_7830448_SNP [dm6]	C	T	1.107e^-7	0.109	INTRON mts	TF binding site mE1_TFBS_cad
2L	7830453	2L_7830453_SNP [dm3] 2L_7830453_SNP [dm6]	T	C	1.211e^-7	0.109	INTRON mts	TF binding site mE1_TFBS_cad
3L	3459327	3L_3459327_SNP [dm3] 3L_3459327_SNP [dm6]	T	C	1.737e^-7	0.109	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7831213	2L_7831213_SNP [dm3] 2L_7831213_SNP [dm6]	A	T	5.798e^-7	0.272	INTRON mts
X	3260430	X_3260430_SNP [dm3] X_3366397_SNP [dm6]	C	G	1.209e^-6	0.299	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7830084	2L_7830084_SNP [dm3] 2L_7830084_SNP [dm6]	C	T	1.214e^-6	0.299	INTRON mts	TF binding site BDTNP1_TFBS_dl
2L	1931216	2L_1931216_SNP [dm3] 2L_1931216_SNP [dm6]	T	G	1.252e^-6	0.299	INTRON CG7337
2L	1931214	2L_1931214_SNP [dm3] 2L_1931214_SNP [dm6]	T	A	1.371e^-6	0.299	INTRON CG7337
3R	21460810	3R_21460810_SNP [dm3] 3R_25635088_SNP [dm6]	T	A	1.451e^-6	0.299	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6076487	2R_6076487_SNP [dm3] 2R_10188982_SNP [dm6]	A	C	1.889e^-6	0.299	INTRON KCNQ
X	3260446	X_3260446_SNP [dm3] X_3366413_SNP [dm6]	G	A	1.912e^-6	0.299	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	3260405	X_3260405_SNP [dm3] X_3366372_SNP [dm6]	C	T	1.955e^-6	0.299	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	7606183	2L_7606183_SNP [dm3] 2L_7606183_SNP [dm6]	T	A	2.157e^-6	0.299	SYNONYMOUS_CODING Cyp4d21
X	3260403	X_3260403_SNP [dm3] X_3366370_SNP [dm6]	A	T	2.233e^-6	0.299	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	7830080	2L_7830080_SNP [dm3] 2L_7830080_SNP [dm6]	A	T	2.721e^-6	0.34	INTRON mts	TF binding site BDTNP1_TFBS_dl
3L	3459525	3L_3459525_SNP [dm3] 3L_3459525_SNP [dm6]	T	A	3.493e^-6	0.376	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_chinmo
2R	6075465	2R_6075465_SNP [dm3] 2R_10187960_SNP [dm6]	C	T	3.804e^-6	0.376	INTRON KCNQ
2L	7605801	2L_7605801_SNP [dm3] 2L_7605801_SNP [dm6]	T	A	3.862e^-6	0.376	SYNONYMOUS_CODING Cyp4d21
X	3260394	X_3260394_SNP [dm3] X_3366361_SNP [dm6]	C	G	4.018e^-6	0.376	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	18704313	2R_18704313_SNP [dm3] 2R_22816808_SNP [dm6]	C	A	4.799e^-6	0.376	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
2L	2418238	2L_2418238_INS [dm3] 2L_2418238_INS [dm6]	T	TT	5.149e^-6	0.376	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3R	10386467	3R_10386467_SNP [dm3] 3R_14560745_SNP [dm6]	A	G	5.217e^-6	0.376	UPSTREAM CG14850 & 1 other INTERGENIC
2L	7831178	2L_7831178_SNP [dm3] 2L_7831178_SNP [dm6]	T	G	5.316e^-6	0.376	INTRON mts
2L	2420375	2L_2420375_SNP [dm3] 2L_2420375_SNP [dm6]	A	T	5.374e^-6	0.376	UPSTREAM CG34447 & 1 other INTERGENIC
X	3260410	X_3260410_SNP [dm3] X_3366377_SNP [dm6]	C	T	5.540e^-6	0.376	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	15101687	2L_15101687_SNP [dm3] 2L_15101687_SNP [dm6]	T	C	5.656e^-6	0.376	INTERGENIC
3R	10347455	3R_10347455_SNP [dm3] 3R_14521733_SNP [dm6]	A	G	5.866e^-6	0.376	SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
2L	7830268	2L_7830268_SNP [dm3] 2L_7830268_SNP [dm6]	A	T	5.984e^-6	0.376	INTRON mts
2L	2421303	2L_2421303_SNP [dm3] 2L_2421303_SNP [dm6]	A	G	6.003e^-6	0.376	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2423899	2L_2423899_SNP [dm3] 2L_2423899_SNP [dm6]	C	A	6.095e^-6	0.376	UTR_3_PRIME CG9886 UPSTREAM CG44139 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	6.253e^-6	0.376	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	6703155	X_6703155_SNP [dm3] X_6809122_SNP [dm6]	T	C	6.479e^-6	0.376	SYNONYMOUS_CODING pod1
2L	2420456	2L_2420456_SNP [dm3] 2L_2420456_SNP [dm6]	C	T	6.611e^-6	0.376	UPSTREAM CG34447 & 1 other INTERGENIC
2L	7605854	2L_7605854_SNP [dm3] 2L_7605854_SNP [dm6]	T	A	7.259e^-6	0.39	INTRON Cyp4d21
3R	10333474	3R_10333474_SNP [dm3] 3R_14507752_SNP [dm6]	T	C	7.276e^-6	0.39	INTRON CR44177
3R	10517944	3R_10517944_SNP [dm3] 3R_14692222_SNP [dm6]	C	G	7.578e^-6	0.395	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2L	15246387	2L_15246387_SNP [dm3] 2L_15246387_SNP [dm6]	C	G	8.306e^-6	0.419	UPSTREAM ZnT35C INTRON ZnT35C
2L	2420542	2L_2420542_SNP [dm3] 2L_2420542_SNP [dm6]	T	G	8.490e^-6	0.419	UPSTREAM CG34447 & 1 other INTERGENIC
2L	2418005	2L_2418005_SNP [dm3] 2L_2418005_SNP [dm6]	C	A	9.598e^-6	0.442	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3R	10384922	3R_10384922_SNP [dm3] 3R_14559200_SNP [dm6]	T	C	1.001e^-5	0.442	UTR_3_PRIME CG14854 UPSTREAM Pde6
3R	19021889	3R_19021889_DEL [dm3] 3R_23196167_DEL [dm6]	ATAA	A	1.016e^-5	0.442	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10517927	3R_10517927_SNP [dm3] 3R_14692205_SNP [dm6]	C	A	1.030e^-5	0.442	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3L	4748359	3L_4748359_SNP [dm3] 3L_4748359_SNP [dm6]	A	G	1.045e^-5	0.442	INTRON RhoGEF64C
2L	18884583	2L_18884583_SNP [dm3] 2L_18884583_SNP [dm6]	T	A	1.077e^-5	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11499812	2L_11499812_SNP [dm3] 2L_11499812_SNP [dm6]	C	T	1.084e^-5	0.442	UPSTREAM CG6488 INTERGENIC
2L	7606712	2L_7606712_SNP [dm3] 2L_7606712_SNP [dm6]	G	A	1.109e^-5	0.442	SYNONYMOUS_CODING Cyp4d21
2L	7587316	2L_7587316_SNP [dm3] 2L_7587316_SNP [dm6]	C	T	1.116e^-5	0.442	INTERGENIC
X	18558737	X_18558737_SNP [dm3] X_18664704_SNP [dm6]	T	C	1.147e^-5	0.442	INTERGENIC
3R	13453682	3R_13453682_SNP [dm3] 3R_17627960_SNP [dm6]	T	A	1.154e^-5	0.442	INTRON CG14325	TF binding site mE1_TFBS_chinmo
2L	7771509	2L_7771509_SNP [dm3] 2L_7771509_SNP [dm6]	G	A	1.197e^-5	0.448	NON_SYNONYMOUS_CODING CG7191
2L	7830911	2L_7830911_SNP [dm3] 2L_7830911_SNP [dm6]	T	C	1.254e^-5	0.448	SYNONYMOUS_CODING mts	TF binding site mE1_TFBS_cad
2L	7830437	2L_7830437_SNP [dm3] 2L_7830437_SNP [dm6]	G	C	1.262e^-5	0.448	INTRON mts	TF binding site mE1_TFBS_cad
3R	2414562	3R_2414562_SNP [dm3] 3R_6588840_SNP [dm6]	T	A	1.266e^-5	0.448	INTRON dpr11
2L	15246395	2L_15246395_SNP [dm3] 2L_15246395_SNP [dm6]	T	C	1.295e^-5	0.45	UPSTREAM ZnT35C INTRON ZnT35C
X	3122161	X_3122161_SNP [dm3] X_3228128_SNP [dm6]	A	G	1.377e^-5	0.453	INTRON dnc
3R	2414606	3R_2414606_SNP [dm3] 3R_6588884_SNP [dm6]	A	T	1.389e^-5	0.453	INTRON dpr11
3R	16890211	3R_16890211_SNP [dm3] 3R_21064489_SNP [dm6]	A	C	1.390e^-5	0.453	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14561388	3L_14561388_SNP [dm3] 3L_14568288_SNP [dm6]	A	G	1.402e^-5	0.453	DOWNSTREAM CG42758 INTERGENIC
2R	5911004	2R_5911004_SNP [dm3] 2R_10023499_SNP [dm6]	G	T	1.461e^-5	0.453	INTRON Pka-R2	TF binding site BDTNP1_TFBS_sna
3L	13163014	3L_13163014_SNP [dm3] 3L_13169914_SNP [dm6]	C	A	1.468e^-5	0.453	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2418398	2L_2418398_SNP [dm3] 2L_2418398_SNP [dm6]	T	A	1.477e^-5	0.453	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
X	3260406	X_3260406_SNP [dm3] X_3366373_SNP [dm6]	T	C	1.499e^-5	0.453	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	2272243	3R_2272243_SNP [dm3] 3R_6446521_SNP [dm6]	C	T	1.604e^-5	0.472	SYNONYMOUS_CODING gpp UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_cad
2L	7147646	2L_7147646_SNP [dm3] 2L_7147646_SNP [dm6]	G	A	1.618e^-5	0.472	INTRON Pvf3	TF binding site mE1_TFBS_cnc
3R	10517931	3R_10517931_DEL [dm3] 3R_14692209_DEL [dm6]	TT	C	1.717e^-5	0.472	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	10344076	3R_10344076_SNP [dm3] 3R_14518354_SNP [dm6]	A	C	1.729e^-5	0.472	DOWNSTREAM CG34273 INTRON Pde6
2L	18570598	2L_18570598_SNP [dm3] 2L_18570598_SNP [dm6]	T	A	1.740e^-5	0.472	INTRON Pde11
2L	7588606	2L_7588606_INS [dm3] 2L_7588606_INS [dm6]	C	CCC	1.750e^-5	0.472	INTERGENIC
2L	2420388	2L_2420388_SNP [dm3] 2L_2420388_SNP [dm6]	T	C	1.772e^-5	0.472	UPSTREAM CG34447 & 1 other INTERGENIC
X	8156906	X_8156906_SNP [dm3] X_8262873_SNP [dm6]	G	T	1.773e^-5	0.472	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	6468887	2L_6468887_SNP [dm3] 2L_6468887_SNP [dm6]	G	A	1.808e^-5	0.472	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5669503	2L_5669503_SNP [dm3] 2L_5669503_SNP [dm6]	C	T	1.860e^-5	0.472	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11838400	3L_11838400_DEL [dm3] 3L_11845300_DEL [dm6]	TCCAGCACATAT...	T	1.861e^-5	0.472	INTERGENIC
3L	11838413	3L_11838413_SNP [dm3] 3L_11845313_SNP [dm6]	C	T	1.861e^-5	0.472	INTERGENIC
2L	2418353	2L_2418353_SNP [dm3] 2L_2418353_SNP [dm6]	A	T	1.960e^-5	0.478	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2R	11275005	2R_11275005_SNP [dm3] 2R_15387500_SNP [dm6]	G	T	1.981e^-5	0.478	UTR_3_PRIME SRPK
3R	2414567	3R_2414567_SNP [dm3] 3R_6588845_SNP [dm6]	A	G	1.993e^-5	0.478	INTRON dpr11
3L	7177099	3L_7177099_SNP [dm3] 3L_7183999_SNP [dm6]	A	T	2.036e^-5	0.478	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10517926	3R_10517926_SNP [dm3] 3R_14692204_SNP [dm6]	C	A	2.087e^-5	0.478	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3L	4169992	3L_4169992_SNP [dm3] 3L_4169992_SNP [dm6]	C	T	2.127e^-5	0.478	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7854403	3R_7854403_SNP [dm3] 3R_12028681_SNP [dm6]	G	T	2.133e^-5	0.478	SYNONYMOUS_CODING CG42505 UTR_3_PRIME CG42504 & 1 other INTRON CG31358	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15182780	X_15182780_SNP [dm3] X_15288747_SNP [dm6]	T	C	2.135e^-5	0.478	UPSTREAM CR44663 INTERGENIC
3L	3859391	3L_3859391_SNP [dm3] 3L_3859391_SNP [dm6]	A	G	2.139e^-5	0.478	SPLICE_SITE_REGION Awh INTRON Awh	TF binding site mE1_TFBS_cad
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	2.142e^-5	0.478	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	2419839	2L_2419839_SNP [dm3] 2L_2419839_SNP [dm6]	T	G	2.193e^-5	0.479	UTR_5_PRIME CG34447 UPSTREAM CG34447 & 1 other
2L	6809163	2L_6809163_SNP [dm3] 2L_6809163_SNP [dm6]	G	T	2.204e^-5	0.479	INTERGENIC
2L	2420370	2L_2420370_SNP [dm3] 2L_2420370_SNP [dm6]	T	G	2.263e^-5	0.479	UPSTREAM CG34447 & 1 other INTERGENIC
2L	7831121	2L_7831121_SNP [dm3] 2L_7831121_SNP [dm6]	A	G	2.268e^-5	0.479	INTRON mts	TF binding site mE1_TFBS_cad
2L	2418516	2L_2418516_SNP [dm3] 2L_2418516_SNP [dm6]	T	G	2.304e^-5	0.479	SYNONYMOUS_CODING CG34447 UPSTREAM CG34448
2L	7606832	2L_7606832_SNP [dm3] 2L_7606832_SNP [dm6]	T	C	2.330e^-5	0.479	SYNONYMOUS_CODING Cyp4d21
2L	13261894	2L_13261894_DEL [dm3] 2L_13261894_DEL [dm6]	CGA	C	2.333e^-5	0.479	INTRON CG44085
2L	2418158	2L_2418158_SNP [dm3] 2L_2418158_SNP [dm6]	T	G	2.355e^-5	0.479	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2R	15138046	2R_15138046_SNP [dm3] 2R_19250541_SNP [dm6]	T	C	2.399e^-5	0.479	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
3L	5301065	3L_5301065_SNP [dm3] 3L_5307965_SNP [dm6]	A	G	2.400e^-5	0.479	INTERGENIC
2R	6073703	2R_6073703_SNP [dm3] 2R_10186198_SNP [dm6]	A	T	2.489e^-5	0.491	INTRON KCNQ
2L	2424558	2L_2424558_SNP [dm3] 2L_2424558_SNP [dm6]	T	C	2.530e^-5	0.494	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	3433725	2L_3433725_SNP [dm3] 2L_3433725_SNP [dm6]	G	A	2.581e^-5	0.495	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17034500	2R_17034500_SNP [dm3] 2R_21146995_SNP [dm6]	G	A	2.586e^-5	0.495	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2421753	2L_2421753_SNP [dm3] 2L_2421753_SNP [dm6]	C	T	2.692e^-5	0.501	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2424708	3R_2424708_SNP [dm3] 3R_6598986_SNP [dm6]	T	A	2.698e^-5	0.501	UPSTREAM CG1138 INTERGENIC
3L	4169991	3L_4169991_SNP [dm3] 3L_4169991_SNP [dm6]	C	T	2.699e^-5	0.501	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13162998	3L_13162998_SNP [dm3] 3L_13169898_SNP [dm6]	C	G	2.903e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10350895	3R_10350895_INS [dm3] 3R_14525173_INS [dm6]	G	GAGTTG	2.947e^-5	0.515	INTRON Pde6
2R	16736820	2R_16736820_SNP [dm3] 2R_20849315_SNP [dm6]	C	T	2.949e^-5	0.515	NON_SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993
3R	10324379	3R_10324379_SNP [dm3] 3R_14498657_SNP [dm6]	C	T	2.950e^-5	0.515	INTRON CR44177	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9351382	2L_9351382_SNP [dm3] 2L_9351382_SNP [dm6]	G	A	2.964e^-5	0.515	DOWNSTREAM CG13110 INTERGENIC
2L	13951307	2L_13951307_SNP [dm3] 2L_13951307_SNP [dm6]	G	A	2.996e^-5	0.515	INTRON Ance-3
2L	2419825	2L_2419825_SNP [dm3] 2L_2419825_SNP [dm6]	G	T	3.011e^-5	0.515	UTR_5_PRIME CG34447 UPSTREAM CG34447
2L	7823280	2L_7823280_MNP [dm3] 2L_7823280_MNP [dm6]	TTCA	GATG	3.040e^-5	0.515	INTRON CG7115
3R	7880721	3R_7880721_SNP [dm3] 3R_12054999_SNP [dm6]	G	A	3.123e^-5	0.515	INTERGENIC
2L	18570462	2L_18570462_SNP [dm3] 2L_18570462_SNP [dm6]	T	A	3.140e^-5	0.515	INTRON Pde11
2L	7938753	2L_7938753_INS [dm3] 2L_7938753_INS [dm6]	T	TT	3.143e^-5	0.515	INTRON Snoo
3R	10347648	3R_10347648_SNP [dm3] 3R_14521926_SNP [dm6]	A	G	3.143e^-5	0.515	SPLICE_SITE_REGION Cyp313a1 INTRON Pde6 & 1 other
3L	13163072	3L_13163072_SNP [dm3] 3L_13169972_SNP [dm6]	T	A	3.157e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	17034719	2R_17034719_SNP [dm3] 2R_21147214_SNP [dm6]	G	T	3.204e^-5	0.515	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13233926	2L_13233926_SNP [dm3] 2L_13233926_SNP [dm6]	C	A	3.213e^-5	0.515	UTR_3_PRIME CG15479 DOWNSTREAM Prosalpha6T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24265819	3R_24265819_SNP [dm3] 3R_28440097_SNP [dm6]	T	C	3.215e^-5	0.515	INTRON beat-VI
3R	10341647	3R_10341647_SNP [dm3] 3R_14515925_SNP [dm6]	C	T	3.342e^-5	0.53	SYNONYMOUS_CODING Pde6
3L	2664071	3L_2664071_SNP [dm3] 3L_2664071_SNP [dm6]	G	T	3.365e^-5	0.53	DOWNSTREAM CG33234 INTRON Fife
2L	2423809	2L_2423809_SNP [dm3] 2L_2423809_SNP [dm6]	G	A	3.473e^-5	0.532	UTR_3_PRIME CG9886 UPSTREAM CG44139 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18619758	2L_18619758_SNP [dm3] 2L_18619758_SNP [dm6]	A	G	3.519e^-5	0.532	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
3L	7188049	3L_7188049_SNP [dm3] 3L_7194949_SNP [dm6]	A	G	3.533e^-5	0.532	INTERGENIC
2L	2418412	2L_2418412_SNP [dm3] 2L_2418412_SNP [dm6]	T	G	3.538e^-5	0.532	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
X	17682375	X_17682375_DEL [dm3] X_17788342_DEL [dm6]	ATCT	A	3.572e^-5	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2418348	2L_2418348_SNP [dm3] 2L_2418348_SNP [dm6]	G	T	3.596e^-5	0.532	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3R	10349883	3R_10349883_SNP [dm3] 3R_14524161_SNP [dm6]	G	T	3.622e^-5	0.532	INTRON Pde6
2R	4999162	2R_4999162_SNP [dm3] 2R_9111657_SNP [dm6]	A	G	3.650e^-5	0.532	UTR_3_PRIME Mys45A DOWNSTREAM tsu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2417770	2L_2417770_SNP [dm3] 2L_2417770_SNP [dm6]	T	A	3.704e^-5	0.532	DOWNSTREAM CG34447 INTRON CG34448
2L	10077630	2L_10077630_INS [dm3] 2L_10077630_INS [dm6]	G	GTCCACGCC	3.709e^-5	0.532	INTRON CG44153	TF binding site mE1_TFBS_cad
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	3.714e^-5	0.532	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	4966027	X_4966027_SNP [dm3] X_5071994_SNP [dm6]	G	A	3.715e^-5	0.532	UTR_3_PRIME CG32767
2L	10932862	2L_10932862_SNP [dm3] 2L_10932862_SNP [dm6]	T	C	3.742e^-5	0.532	INTRON dpr2
3L	14816159	3L_14816159_SNP [dm3] 3L_14823059_SNP [dm6]	G	A	3.846e^-5	0.542	INTRON CG17839
2L	15523396	2L_15523396_SNP [dm3] 2L_15523396_SNP [dm6]	C	T	3.945e^-5	0.551	INTRON CR43761 EXON CR43761
2R	11250600	2R_11250600_SNP [dm3] 2R_15363095_SNP [dm6]	T	A	3.966e^-5	0.551	INTRON unc-5
3L	5301095	3L_5301095_SNP [dm3] 3L_5307995_SNP [dm6]	T	A	4.055e^-5	0.553	INTERGENIC
2L	15523412	2L_15523412_SNP [dm3] 2L_15523412_SNP [dm6]	C	A	4.073e^-5	0.553	INTRON CR43761 EXON CR43761
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	4.103e^-5	0.553	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	8307076	2L_8307076_SNP [dm3] 2L_8307076_SNP [dm6]	C	T	4.140e^-5	0.553	SPLICE_SITE_REGION Ostgamma DOWNSTREAM CG7840 INTRON Ostgamma	TF binding site mE1_TFBS_sens
2R	4999161	2R_4999161_SNP [dm3] 2R_9111656_SNP [dm6]	A	G	4.245e^-5	0.553	UTR_3_PRIME Mys45A DOWNSTREAM tsu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7605227	2L_7605227_SNP [dm3] 2L_7605227_SNP [dm6]	T	C	4.249e^-5	0.553	UPSTREAM Cyp4d21 DOWNSTREAM CR45370 INTERGENIC
X	5102965	X_5102965_SNP [dm3] X_5208932_SNP [dm6]	G	T	4.256e^-5	0.553	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2418533	2L_2418533_SNP [dm3] 2L_2418533_SNP [dm6]	C	T	4.312e^-5	0.553	NON_SYNONYMOUS_CODING CG34447 UPSTREAM CG34448
2R	15137707	2R_15137707_SNP [dm3] 2R_19250202_SNP [dm6]	A	T	4.371e^-5	0.553	DOWNSTREAM CG33454 INTRON wbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
3R	7856212	3R_7856212_SNP [dm3] 3R_12030490_SNP [dm6]	C	T	4.418e^-5	0.553	NON_SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42505 & 1 other
2L	18570467	2L_18570467_SNP [dm3] 2L_18570467_SNP [dm6]	T	G	4.425e^-5	0.553	INTRON Pde11
2L	13256262	2L_13256262_SNP [dm3] 2L_13256262_SNP [dm6]	G	A	4.453e^-5	0.553	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7579231	2L_7579231_SNP [dm3] 2L_7579231_SNP [dm6]	C	A	4.461e^-5	0.553	UPSTREAM RapGAP1 INTERGENIC
2L	7824126	2L_7824126_SNP [dm3] 2L_7824126_SNP [dm6]	T	G	4.467e^-5	0.553	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2880018	2L_2880018_SNP [dm3] 2L_2880018_SNP [dm6]	A	T	4.502e^-5	0.553	DOWNSTREAM NTPase INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	7823275	2L_7823275_DEL [dm3] 2L_7823275_DEL [dm6]	TCA	T	4.576e^-5	0.553	INTRON CG7115
2R	6073621	2R_6073621_SNP [dm3] 2R_10186116_SNP [dm6]	T	C	4.613e^-5	0.553	INTRON KCNQ
3R	13453673	3R_13453673_SNP [dm3] 3R_17627951_SNP [dm6]	T	A	4.649e^-5	0.553	INTRON CG14325	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7605762	2L_7605762_SNP [dm3] 2L_7605762_SNP [dm6]	T	C	4.688e^-5	0.553	SYNONYMOUS_CODING Cyp4d21
2L	7771532	2L_7771532_SNP [dm3] 2L_7771532_SNP [dm6]	C	A	4.695e^-5	0.553	SYNONYMOUS_CODING CG7191
2L	2424531	2L_2424531_SNP [dm3] 2L_2424531_SNP [dm6]	G	C	4.697e^-5	0.553	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	7587018	2L_7587018_SNP [dm3] 2L_7587018_SNP [dm6]	G	A	4.700e^-5	0.553	INTERGENIC
2L	2424559	2L_2424559_SNP [dm3] 2L_2424559_SNP [dm6]	A	T	4.734e^-5	0.553	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424580	2L_2424580_SNP [dm3] 2L_2424580_SNP [dm6]	T	C	4.734e^-5	0.553	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	18712582	2R_18712582_SNP [dm3] 2R_22825059_SNP [dm6]	G	A	4.752e^-5	0.553	UPSTREAM CG30274 & 1 other INTRON CG42284
3R	16890617	3R_16890617_SNP [dm3] 3R_21064895_SNP [dm6]	G	A	4.773e^-5	0.553	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7824135	2L_7824135_SNP [dm3] 2L_7824135_SNP [dm6]	A	C	4.799e^-5	0.553	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2418409	2L_2418409_SNP [dm3] 2L_2418409_SNP [dm6]	C	G	4.809e^-5	0.553	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2R	11279593	2R_11279593_SNP [dm3] 2R_15392088_SNP [dm6]	C	T	4.909e^-5	0.559	INTERGENIC
2L	10074621	2L_10074621_SNP [dm3] 2L_10074621_SNP [dm6]	T	G	4.917e^-5	0.559	INTRON CG44153
3R	24522378	3R_24522378_SNP [dm3] 3R_28696656_SNP [dm6]	T	G	4.981e^-5	0.561	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15137669	2R_15137669_DEL [dm3] 2R_19250164_DEL [dm6]	TTTCTGCTCTGTTC...	A	5.023e^-5	0.561	DOWNSTREAM CG33454 INTRON wbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5301094	3L_5301094_SNP [dm3] 3L_5307994_SNP [dm6]	T	A	5.032e^-5	0.561	INTERGENIC
3R	2227611	3R_2227611_SNP [dm3] 3R_6401889_SNP [dm6]	C	T	5.054e^-5	0.561	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	7611259	3L_7611259_SNP [dm3] 3L_7618159_SNP [dm6]	G	A	5.084e^-5	0.561	INTRON CG33275
2L	7587269	2L_7587269_SNP [dm3] 2L_7587269_SNP [dm6]	G	A	5.113e^-5	0.561	INTERGENIC
2L	16216739	2L_16216739_SNP [dm3] 2L_16216739_SNP [dm6]	C	G	5.229e^-5	0.568	EXON CR43840
2R	14238004	2R_14238004_SNP [dm3] 2R_18350499_SNP [dm6]	T	A	5.244e^-5	0.568	INTRON sbb
2L	2422214	2L_2422214_SNP [dm3] 2L_2422214_SNP [dm6]	C	A	5.292e^-5	0.568	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo
2R	15137697	2R_15137697_SNP [dm3] 2R_19250192_SNP [dm6]	A	G	5.335e^-5	0.568	DOWNSTREAM CG33454 INTRON wbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
2R	11275013	2R_11275013_SNP [dm3] 2R_15387508_SNP [dm6]	C	G	5.336e^-5	0.568	UTR_3_PRIME SRPK
3R	17721121	3R_17721121_SNP [dm3] 3R_21895399_SNP [dm6]	G	T	5.362e^-5	0.568	INTRON CG6678
X	15182794	X_15182794_SNP [dm3] X_15288761_SNP [dm6]	C	G	5.423e^-5	0.571	UPSTREAM CR44663 INTERGENIC
2R	17034713	2R_17034713_SNP [dm3] 2R_21147208_SNP [dm6]	T	C	5.458e^-5	0.571	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2421772	2L_2421772_SNP [dm3] 2L_2421772_SNP [dm6]	G	C	5.484e^-5	0.571	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10384940	3R_10384940_SNP [dm3] 3R_14559218_SNP [dm6]	G	A	5.508e^-5	0.571	UTR_3_PRIME CG14854 UPSTREAM Pde6
3R	10333599	3R_10333599_SNP [dm3] 3R_14507877_SNP [dm6]	G	A	5.754e^-5	0.59	INTRON CR44177
2L	7605767	2L_7605767_SNP [dm3] 2L_7605767_SNP [dm6]	A	C	5.793e^-5	0.59	NON_SYNONYMOUS_CODING Cyp4d21
3R	10345795	3R_10345795_SNP [dm3] 3R_14520073_SNP [dm6]	G	T	5.813e^-5	0.59	UPSTREAM Cyp313a1 INTRON Pde6
2L	8588939	2L_8588939_SNP [dm3] 2L_8588939_SNP [dm6]	A	G	5.834e^-5	0.59	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3R	21460564	3R_21460564_SNP [dm3] 3R_25634842_SNP [dm6]	G	A	5.847e^-5	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11279584	2R_11279584_SNP [dm3] 2R_15392079_SNP [dm6]	A	C	5.918e^-5	0.593	INTERGENIC
2R	11250613	2R_11250613_SNP [dm3] 2R_15363108_SNP [dm6]	A	T	5.961e^-5	0.593	INTRON unc-5
2L	8838765	2L_8838765_SNP [dm3] 2L_8838765_SNP [dm6]	G	T	5.988e^-5	0.593	INTERGENIC
2L	15101440	2L_15101440_SNP [dm3] 2L_15101440_SNP [dm6]	G	A	6.011e^-5	0.593	INTERGENIC
2R	11249328	2R_11249328_SNP [dm3] 2R_15361823_SNP [dm6]	G	T	6.062e^-5	0.595	INTRON unc-5	TF binding site mE1_TFBS_chinmo
3R	7874344	3R_7874344_SNP [dm3] 3R_12048622_SNP [dm6]	T	C	6.302e^-5	0.616	SYNONYMOUS_CODING CG14739	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8793267	X_8793267_SNP [dm3] X_8899234_SNP [dm6]	T	C	6.347e^-5	0.617	NON_SYNONYMOUS_CODING CG1885 UPSTREAM Moe	TF binding site BDTNP1_TFBS_dl
3R	16890287	3R_16890287_SNP [dm3] 3R_21064565_SNP [dm6]	T	C	6.488e^-5	0.627	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15137560	2R_15137560_SNP [dm3] 2R_19250055_SNP [dm6]	A	G	6.635e^-5	0.63	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	6.706e^-5	0.63	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	2418730	2L_2418730_SNP [dm3] 2L_2418730_SNP [dm6]	G	C	6.728e^-5	0.63	SYNONYMOUS_CODING CG34447 UPSTREAM CG34448
2L	2418015	2L_2418015_SNP [dm3] 2L_2418015_SNP [dm6]	T	A	6.777e^-5	0.63	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3R	22908752	3R_22908752_SNP [dm3] 3R_27083030_SNP [dm6]	G	A	6.781e^-5	0.63	DOWNSTREAM Cpr97Ea & 1 other INTERGENIC	TF binding site mE1_TFBS_D
2L	7606477	2L_7606477_SNP [dm3] 2L_7606477_SNP [dm6]	A	T	6.813e^-5	0.63	INTRON Cyp4d21
2R	6077238	2R_6077238_SNP [dm3] 2R_10189733_SNP [dm6]	G	A	6.815e^-5	0.63	INTRON KCNQ
2L	13268852	2L_13268852_SNP [dm3] 2L_13268852_SNP [dm6]	T	A	6.836e^-5	0.63	INTRON CG44085	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17341708	2L_17341708_SNP [dm3] 2L_17341708_SNP [dm6]	A	G	6.848e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14236469	2R_14236469_DEL [dm3] 2R_18348964_DEL [dm6]	CT	C	6.856e^-5	0.63	INTRON sbb
3R	24522384	3R_24522384_DEL [dm3] 3R_28696662_DEL [dm6]	CC	T	6.880e^-5	0.63	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5301045	3L_5301045_SNP [dm3] 3L_5307945_SNP [dm6]	A	G	7.033e^-5	0.636	INTERGENIC
2L	15031843	2L_15031843_SNP [dm3] 2L_15031843_SNP [dm6]	T	A	7.042e^-5	0.636	UPSTREAM CG31832 INTRON GABA-B-R1
3R	7861150	3R_7861150_SNP [dm3] 3R_12035428_SNP [dm6]	C	T	7.102e^-5	0.636	UTR_3_PRIME ssp5
2L	5669362	2L_5669362_SNP [dm3] 2L_5669362_SNP [dm6]	G	A	7.108e^-5	0.636	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8417873	3L_8417873_SNP [dm3] 3L_8424773_SNP [dm6]	T	C	7.125e^-5	0.636	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16712755	2L_16712755_SNP [dm3] 2L_16712755_SNP [dm6]	G	C	7.200e^-5	0.64	INTRON CG31808
3R	16890378	3R_16890378_SNP [dm3] 3R_21064656_SNP [dm6]	G	A	7.315e^-5	0.64	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	17682374	X_17682374_SNP [dm3] X_17788341_SNP [dm6]	A	T	7.317e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7584786	2L_7584786_SNP [dm3] 2L_7584786_SNP [dm6]	A	G	7.342e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7605899	2L_7605899_SNP [dm3] 2L_7605899_SNP [dm6]	G	A	7.400e^-5	0.64	INTRON Cyp4d21
X	8512731	X_8512731_SNP [dm3] X_8618698_SNP [dm6]	C	T	7.426e^-5	0.64	INTERGENIC	regulatory region REDfly_CRMs
2L	18483205	2L_18483205_DEL [dm3] 2L_18483205_DEL [dm6]	AAAAA	A	7.458e^-5	0.64	INTRON CG10283
3R	10326595	3R_10326595_SNP [dm3] 3R_14500873_SNP [dm6]	C	T	7.594e^-5	0.64	INTRON CR44177
3R	26199767	3R_26199767_SNP [dm3] 3R_30374045_SNP [dm6]	C	T	7.629e^-5	0.64	INTERGENIC
2L	17333258	2L_17333258_SNP [dm3] 2L_17333258_SNP [dm6]	G	A	7.676e^-5	0.64	INTERGENIC
X	8532600	X_8532600_SNP [dm3] X_8638567_SNP [dm6]	A	G	7.721e^-5	0.64	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	12174942	2L_12174942_SNP [dm3] 2L_12174942_SNP [dm6]	A	T	7.773e^-5	0.64	UPSTREAM aret & 1 other DOWNSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	7020938	2L_7020938_SNP [dm3] 2L_7020938_SNP [dm6]	G	T	7.797e^-5	0.64	UPSTREAM Pcp INTRON ade3
3R	5310871	3R_5310871_SNP [dm3] 3R_9485149_SNP [dm6]	T	C	7.889e^-5	0.64	INTRON CG16779
X	17682360	X_17682360_SNP [dm3] X_17788327_SNP [dm6]	G	A	7.890e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13163110	3L_13163110_SNP [dm3] 3L_13170010_SNP [dm6]	T	G	7.916e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	1361539	2L_1361539_SNP [dm3] 2L_1361539_SNP [dm6]	T	A	8.020e^-5	0.64	SYNONYMOUS_CODING NLaz	TF binding site mE1_TFBS_cad
2L	7606483	2L_7606483_DEL [dm3] 2L_7606483_DEL [dm6]	CATGTGGGC	C	8.037e^-5	0.64	INTRON Cyp4d21
2R	6075046	2R_6075046_SNP [dm3] 2R_10187541_SNP [dm6]	C	G	8.037e^-5	0.64	INTRON KCNQ
3R	10517935	3R_10517935_SNP [dm3] 3R_14692213_SNP [dm6]	C	A	8.060e^-5	0.64	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2L	7824369	2L_7824369_SNP [dm3] 2L_7824369_SNP [dm6]	G	A	8.126e^-5	0.64	DOWNSTREAM Rack1 INTRON CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7718028	2L_7718028_SNP [dm3] 2L_7718028_SNP [dm6]	G	A	8.129e^-5	0.64	INTRON CG13793
3R	24522321	3R_24522321_SNP [dm3] 3R_28696599_SNP [dm6]	G	T	8.227e^-5	0.64	DOWNSTREAM CG9990 INTRON htt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7771580	2L_7771580_SNP [dm3] 2L_7771580_SNP [dm6]	A	G	8.250e^-5	0.64	SYNONYMOUS_CODING CG7191
3L	7921862	3L_7921862_SNP [dm3] 3L_7928762_SNP [dm6]	C	T	8.258e^-5	0.64	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2421437	2L_2421437_SNP [dm3] 2L_2421437_SNP [dm6]	G	C	8.300e^-5	0.64	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2664416	3L_2664416_SNP [dm3] 3L_2664416_SNP [dm6]	G	C	8.314e^-5	0.64	DOWNSTREAM CG33234 INTRON Fife
3R	19530786	3R_19530786_SNP [dm3] 3R_23705064_SNP [dm6]	A	G	8.358e^-5	0.64	NON_SYNONYMOUS_CODING CG31414 DOWNSTREAM CG31413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13163086	3L_13163086_SNP [dm3] 3L_13169986_SNP [dm6]	A	T	8.415e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	7606180	2L_7606180_SNP [dm3] 2L_7606180_SNP [dm6]	A	T	8.497e^-5	0.64	SYNONYMOUS_CODING Cyp4d21
3R	9578555	3R_9578555_SNP [dm3] 3R_13752833_SNP [dm6]	A	G	8.527e^-5	0.64	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8445887	2L_8445887_SNP [dm3] 2L_8445887_SNP [dm6]	A	G	8.547e^-5	0.64	UTR_3_PRIME U26 DOWNSTREAM U26 & 1 other
2R	15137986	2R_15137986_SNP [dm3] 2R_19250481_SNP [dm6]	A	G	8.559e^-5	0.64	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
3L	18953068	3L_18953068_SNP [dm3] 3L_18959968_SNP [dm6]	T	C	8.559e^-5	0.64	INTERGENIC
2L	7590265	2L_7590265_SNP [dm3] 2L_7590265_SNP [dm6]	C	T	8.563e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	24030822	3R_24030822_DEL [dm3] 3R_28205100_DEL [dm6]	AA	T	8.582e^-5	0.64	INTRON CG34354
3L	13163100	3L_13163100_SNP [dm3] 3L_13170000_SNP [dm6]	A	T	8.625e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	18570476	2L_18570476_SNP [dm3] 2L_18570476_SNP [dm6]	A	T	8.683e^-5	0.64	INTRON Pde11
3R	16890004	3R_16890004_SNP [dm3] 3R_21064282_SNP [dm6]	T	C	8.693e^-5	0.64	UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2417794	2L_2417794_SNP [dm3] 2L_2417794_SNP [dm6]	T	A	8.777e^-5	0.64	DOWNSTREAM CG34447 INTRON CG34448
3R	25195108	3R_25195108_SNP [dm3] 3R_29369386_SNP [dm6]	T	C	8.810e^-5	0.64	SYNONYMOUS_CODING CG45546
3L	11838244	3L_11838244_SNP [dm3] 3L_11845144_SNP [dm6]	C	G	8.842e^-5	0.64	INTERGENIC
2L	4322579	2L_4322579_SNP [dm3] 2L_4322579_SNP [dm6]	A	G	8.845e^-5	0.64	UTR_3_PRIME tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13163105	3L_13163105_SNP [dm3] 3L_13170005_SNP [dm6]	T	G	8.850e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	7618987	2L_7618987_SNP [dm3] 2L_7618987_SNP [dm6]	A	C	8.858e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv mE1_TFBS_sens
3R	25794649	3R_25794649_SNP [dm3] 3R_29968927_SNP [dm6]	G	C	8.879e^-5	0.64	INTRON TkR99D
3R	9590623	3R_9590623_SNP [dm3] 3R_13764901_SNP [dm6]	C	A	8.893e^-5	0.64	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
3L	531973	3L_531973_SNP [dm3] 3L_531973_SNP [dm6]	T	A	8.911e^-5	0.64	INTRON klar
2R	6076383	2R_6076383_SNP [dm3] 2R_10188878_SNP [dm6]	T	C	8.917e^-5	0.64	INTRON KCNQ
2R	9404809	2R_9404809_SNP [dm3] 2R_13517304_SNP [dm6]	C	T	8.919e^-5	0.64	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
2L	3878470	2L_3878470_SNP [dm3] 2L_3878470_SNP [dm6]	T	A	8.979e^-5	0.64	INTRON capu
2L	2420627	2L_2420627_SNP [dm3] 2L_2420627_SNP [dm6]	A	T	8.982e^-5	0.64	UPSTREAM CG34447 & 1 other INTERGENIC
2R	19100728	2R_19100728_DEL [dm3] 2R_23213205_DEL [dm6]	TCAATAAAAGTGTT...	T	8.993e^-5	0.64	INTERGENIC
2L	17630245	2L_17630245_SNP [dm3] 2L_17630245_SNP [dm6]	T	C	9.005e^-5	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18496383	3R_18496383_SNP [dm3] 3R_22670661_SNP [dm6]	G	A	9.133e^-5	0.646	INTRON CG45058
3L	8995235	3L_8995235_SNP [dm3] 3L_9002135_SNP [dm6]	C	T	9.230e^-5	0.649	UTR_3_PRIME CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7569230	2R_7569230_SNP [dm3] 2R_11681725_SNP [dm6]	G	A	9.235e^-5	0.649	INTRON Buffy	TF binding site BDTNP1_TFBS_hb
3L	11401269	3L_11401269_SNP [dm3] 3L_11408169_SNP [dm6]	C	G	9.304e^-5	0.651	INTERGENIC
3R	16883268	3R_16883268_SNP [dm3] 3R_21057546_SNP [dm6]	A	G	9.399e^-5	0.655	INTRON Mvl
2L	3814807	2L_3814807_SNP [dm3] 2L_3814807_SNP [dm6]	A	G	9.572e^-5	0.665	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3963431	3L_3963431_SNP [dm3] 3L_3963431_SNP [dm6]	T	A	9.619e^-5	0.666	UPSTREAM CG12605 INTRON CG12605	TF binding site BDTNP1_TFBS_dl
2L	2420588	2L_2420588_SNP [dm3] 2L_2420588_SNP [dm6]	A	T	9.663e^-5	0.666	UPSTREAM CG34447 & 1 other INTERGENIC
2L	12174755	2L_12174755_SNP [dm3] 2L_12174755_SNP [dm6]	C	G	9.706e^-5	0.667	UPSTREAM aret & 1 other DOWNSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	14816192	3L_14816192_SNP [dm3] 3L_14823092_SNP [dm6]	C	G	9.945e^-5	0.679	INTRON CG17839
3R	10384933	3R_10384933_SNP [dm3] 3R_14559211_SNP [dm6]	T	G	9.957e^-5	0.679	UTR_3_PRIME CG14854 UPSTREAM Pde6
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.002e^-4	0.679	DOWNSTREAM CG42758 INTERGENIC
3L	11838388	3L_11838388_SNP [dm3] 3L_11845288_SNP [dm6]	A	C	1.005e^-4	0.679	INTERGENIC
2L	13261358	2L_13261358_SNP [dm3] 2L_13261358_SNP [dm6]	G	A	1.006e^-4	0.679	UTR_5_PRIME CG44085 INTRON CG44085
3R	10352083	3R_10352083_SNP [dm3] 3R_14526361_SNP [dm6]	C	T	1.025e^-4	0.688	INTRON Pde6
2R	18129287	2R_18129287_SNP [dm3] 2R_22241782_SNP [dm6]	C	T	1.026e^-4	0.688	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
2L	16609790	2L_16609790_SNP [dm3] 2L_16609790_SNP [dm6]	A	T	1.034e^-4	0.69	SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	15246371	2L_15246371_DEL [dm3] 2L_15246371_DEL [dm6]	GTTACTCGATGG...	G	1.043e^-4	0.693	UPSTREAM ZnT35C INTRON ZnT35C
3L	9408627	3L_9408627_SNP [dm3] 3L_9415527_SNP [dm6]	G	T	1.046e^-4	0.693	DOWNSTREAM CG3982 INTRON CG3967
2L	7605919	2L_7605919_SNP [dm3] 2L_7605919_SNP [dm6]	C	T	1.050e^-4	0.694	INTRON Cyp4d21
3R	10386172	3R_10386172_SNP [dm3] 3R_14560450_SNP [dm6]	T	C	1.058e^-4	0.695	UPSTREAM CG14850 & 1 other INTERGENIC
3R	10585021	3R_10585021_SNP [dm3] 3R_14759299_SNP [dm6]	T	G	1.059e^-4	0.695	INTRON jvl
2L	2423725	2L_2423725_SNP [dm3] 2L_2423725_SNP [dm6]	A	G	1.067e^-4	0.697	UTR_3_PRIME CG9886 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo
3L	7188452	3L_7188452_SNP [dm3] 3L_7195352_SNP [dm6]	A	G	1.084e^-4	0.698	INTERGENIC
X	5102905	X_5102905_SNP [dm3] X_5208872_SNP [dm6]	G	A	1.087e^-4	0.698	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5102918	X_5102918_SNP [dm3] X_5208885_SNP [dm6]	A	C	1.087e^-4	0.698	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5102932	X_5102932_SNP [dm3] X_5208899_SNP [dm6]	T	C	1.087e^-4	0.698	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5102937	X_5102937_SNP [dm3] X_5208904_SNP [dm6]	T	C	1.087e^-4	0.698	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	506372	3L_506372_SNP [dm3] 3L_506372_SNP [dm6]	G	A	1.097e^-4	0.698	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	4433668	X_4433668_SNP [dm3] X_4539635_SNP [dm6]	T	A	1.097e^-4	0.698	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15101448	2L_15101448_SNP [dm3] 2L_15101448_SNP [dm6]	G	T	1.101e^-4	0.698	INTERGENIC
3L	12042415	3L_12042415_INS [dm3] 3L_12049315_INS [dm6]	T	TAT	1.101e^-4	0.698	INTRON rols
2L	2420418	2L_2420418_SNP [dm3] 2L_2420418_SNP [dm6]	G	C	1.106e^-4	0.698	UPSTREAM CG34447 & 1 other INTERGENIC
3R	24265753	3R_24265753_SNP [dm3] 3R_28440031_SNP [dm6]	T	G	1.114e^-4	0.698	INTRON beat-VI
2L	8334961	2L_8334961_SNP [dm3] 2L_8334961_SNP [dm6]	G	C	1.121e^-4	0.698	INTERGENIC
3R	10350881	3R_10350881_SNP [dm3] 3R_14525159_SNP [dm6]	C	G	1.121e^-4	0.698	INTRON Pde6
3R	16890366	3R_16890366_SNP [dm3] 3R_21064644_SNP [dm6]	G	A	1.126e^-4	0.698	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10349630	3R_10349630_SNP [dm3] 3R_14523908_SNP [dm6]	T	C	1.134e^-4	0.698	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	7606048	2L_7606048_SNP [dm3] 2L_7606048_SNP [dm6]	T	C	1.134e^-4	0.698	SYNONYMOUS_CODING Cyp4d21
2R	5299654	2R_5299654_SNP [dm3] 2R_9412149_SNP [dm6]	C	G	1.134e^-4	0.698	INTRON wun
2L	7824045	2L_7824045_SNP [dm3] 2L_7824045_SNP [dm6]	T	C	1.134e^-4	0.698	INTRON CG7115	TF binding site mE1_TFBS_sens
X	846996	X_846996_SNP [dm3] X_952963_SNP [dm6]	G	T	1.140e^-4	0.698	INTERGENIC
2R	7050602	2R_7050602_SNP [dm3] 2R_11163097_SNP [dm6]	C	T	1.145e^-4	0.698	INTRON shn & 1 other
2L	20503858	2L_20503858_SNP [dm3] 2L_20503858_SNP [dm6]	A	G	1.147e^-4	0.698	INTERGENIC
2L	7047126	2L_7047126_SNP [dm3] 2L_7047126_SNP [dm6]	A	C	1.150e^-4	0.698	SYNONYMOUS_CODING milt INTRON milt
3L	4748406	3L_4748406_SNP [dm3] 3L_4748406_SNP [dm6]	T	G	1.168e^-4	0.705	INTRON RhoGEF64C
X	2585682	X_2585682_SNP [dm3] X_2691649_SNP [dm6]	G	C	1.169e^-4	0.705	INTRON per	TF binding site mE1_TFBS_chinmo
3L	2468411	3L_2468411_SNP [dm3] 3L_2468411_SNP [dm6]	A	T	1.176e^-4	0.706	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	24420196	3R_24420196_SNP [dm3] 3R_28594474_SNP [dm6]	G	A	1.180e^-4	0.706	DOWNSTREAM CR43440 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7590270	2L_7590270_DEL [dm3] 2L_7590270_DEL [dm6]	GTA	G	1.184e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	15137646	2R_15137646_SNP [dm3] 2R_19250141_SNP [dm6]	G	A	1.186e^-4	0.706	DOWNSTREAM CG33454 INTRON wbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10480061	3L_10480061_SNP [dm3] 3L_10486961_SNP [dm6]	G	A	1.206e^-4	0.708	INTRON A2bp1
X	19491323	X_19491323_SNP [dm3] X_19597290_SNP [dm6]	C	T	1.213e^-4	0.708	UPSTREAM RpS10b INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3254555	2R_3254555_SNP [dm3] 2R_7367050_SNP [dm6]	T	A	1.216e^-4	0.708	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16336213	2L_16336213_SNP [dm3] 2L_16336213_SNP [dm6]	G	A	1.221e^-4	0.708	NON_SYNONYMOUS_CODING CG31817
3R	18184887	3R_18184887_SNP [dm3] 3R_22359165_SNP [dm6]	A	G	1.222e^-4	0.708	INTRON Sar1
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.229e^-4	0.708	UTR_3_PRIME CG42758
2R	6786077	2R_6786077_SNP [dm3] 2R_10898572_SNP [dm6]	G	A	1.233e^-4	0.708	SYNONYMOUS_CODING Rpb5 UPSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10345857	3R_10345857_SNP [dm3] 3R_14520135_SNP [dm6]	A	C	1.239e^-4	0.708	UPSTREAM Cyp313a1 INTRON Pde6
3R	7852931	3R_7852931_SNP [dm3] 3R_12027209_SNP [dm6]	C	T	1.240e^-4	0.708	DOWNSTREAM CG31358 & 2 others INTERGENIC
3R	10345879	3R_10345879_SNP [dm3] 3R_14520157_SNP [dm6]	C	T	1.241e^-4	0.708	UPSTREAM Cyp313a1 INTRON Pde6
3R	19378755	3R_19378755_SNP [dm3] 3R_23553033_SNP [dm6]	A	T	1.247e^-4	0.708	INTERGENIC
3R	8442237	3R_8442237_SNP [dm3] 3R_12616515_SNP [dm6]	C	T	1.252e^-4	0.708	INTERGENIC
3R	7854385	3R_7854385_SNP [dm3] 3R_12028663_SNP [dm6]	G	T	1.258e^-4	0.708	SYNONYMOUS_CODING CG42505 UTR_3_PRIME CG42504 & 1 other INTRON CG31358	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7824303	2L_7824303_SNP [dm3] 2L_7824303_SNP [dm6]	G	C	1.258e^-4	0.708	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6156289	2R_6156289_SNP [dm3] 2R_10268784_SNP [dm6]	A	T	1.261e^-4	0.708	NON_SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9592299	3R_9592299_SNP [dm3] 3R_13766577_SNP [dm6]	A	G	1.262e^-4	0.708	UPSTREAM Cht5 INTRON CG9312
3R	19410554	3R_19410554_SNP [dm3] 3R_23584832_SNP [dm6]	T	C	1.264e^-4	0.708	INTERGENIC
2L	2420977	2L_2420977_SNP [dm3] 2L_2420977_SNP [dm6]	G	T	1.264e^-4	0.708	NON_SYNONYMOUS_CODING CG9886 UPSTREAM CG34447
3R	10351331	3R_10351331_SNP [dm3] 3R_14525609_SNP [dm6]	C	A	1.266e^-4	0.708	INTRON Pde6
2L	7605907	2L_7605907_SNP [dm3] 2L_7605907_SNP [dm6]	C	T	1.269e^-4	0.708	INTRON Cyp4d21
3R	9578843	3R_9578843_SNP [dm3] 3R_13753121_SNP [dm6]	T	A	1.269e^-4	0.708	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24427115	3R_24427115_SNP [dm3] 3R_28601393_SNP [dm6]	T	C	1.272e^-4	0.708	UPSTREAM snoRNA:Psi28S-3405a & 4 others INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	19087759	2L_19087759_SNP [dm3] 2L_19087759_SNP [dm6]	A	G	1.277e^-4	0.709	INTRON Lim3
2R	11280109	2R_11280109_SNP [dm3] 2R_15392604_SNP [dm6]	T	G	1.285e^-4	0.711	INTERGENIC
3R	19410574	3R_19410574_SNP [dm3] 3R_23584852_SNP [dm6]	A	T	1.293e^-4	0.712	INTERGENIC
3L	8868928	3L_8868928_SNP [dm3] 3L_8875828_SNP [dm6]	C	T	1.295e^-4	0.712	INTRON dally
2L	1361896	2L_1361896_DEL [dm3] 2L_1361896_DEL [dm6]	AGGA	A	1.305e^-4	0.712	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
2L	7606814	2L_7606814_SNP [dm3] 2L_7606814_SNP [dm6]	G	A	1.311e^-4	0.712	SYNONYMOUS_CODING Cyp4d21
X	19240426	X_19240426_SNP [dm3] X_19346393_SNP [dm6]	G	T	1.313e^-4	0.712	INTRON nAChRalpha7
2L	6467812	2L_6467812_SNP [dm3] 2L_6467812_SNP [dm6]	C	T	1.314e^-4	0.712	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10386117	3R_10386117_SNP [dm3] 3R_14560395_SNP [dm6]	G	A	1.323e^-4	0.712	UPSTREAM CG14850 & 1 other INTERGENIC
2L	7606318	2L_7606318_SNP [dm3] 2L_7606318_SNP [dm6]	C	T	1.324e^-4	0.712	SYNONYMOUS_CODING Cyp4d21
3R	17174165	3R_17174165_SNP [dm3] 3R_21348443_SNP [dm6]	T	A	1.330e^-4	0.712	NON_SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10386119	3R_10386119_SNP [dm3] 3R_14560397_SNP [dm6]	C	A	1.331e^-4	0.712	UPSTREAM CG14850 & 1 other INTERGENIC
3R	10351326	3R_10351326_SNP [dm3] 3R_14525604_SNP [dm6]	A	G	1.335e^-4	0.712	INTRON Pde6
2L	7831457	2L_7831457_SNP [dm3] 2L_7831457_SNP [dm6]	T	A	1.337e^-4	0.712	INTRON mts
2L	6468080	2L_6468080_MNP [dm3] 2L_6468080_MNP [dm6]	GTCC	CGTA	1.339e^-4	0.712	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	18570616	2L_18570616_SNP [dm3] 2L_18570616_SNP [dm6]	G	C	1.340e^-4	0.712	INTRON Pde11
3L	7106567	3L_7106567_SNP [dm3] 3L_7113467_SNP [dm6]	G	A	1.354e^-4	0.717	INTRON form3
3R	3050577	3R_3050577_SNP [dm3] 3R_7224855_SNP [dm6]	A	G	1.369e^-4	0.722	INTRON CG14608
3L	16333168	3L_16333168_SNP [dm3] 3L_16340068_SNP [dm6]	G	A	1.372e^-4	0.722	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19410469	3R_19410469_SNP [dm3] 3R_23584747_SNP [dm6]	G	A	1.377e^-4	0.722	INTERGENIC
3R	7855780	3R_7855780_SNP [dm3] 3R_12030058_SNP [dm6]	C	G	1.386e^-4	0.722	NON_SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42505 & 1 other
2L	15101443	2L_15101443_SNP [dm3] 2L_15101443_SNP [dm6]	T	C	1.387e^-4	0.722	INTERGENIC
2R	6248884	2R_6248884_DEL [dm3] 2R_10361379_DEL [dm6]	AA	A	1.389e^-4	0.722	UPSTREAM Gr47a DOWNSTREAM CG43396 INTRON CG42732	TF binding site mE1_TFBS_inv
X	3112433	X_3112433_SNP [dm3] X_3218400_SNP [dm6]	T	A	1.391e^-4	0.722	INTRON dnc
2L	13261352	2L_13261352_SNP [dm3] 2L_13261352_SNP [dm6]	G	A	1.395e^-4	0.722	UTR_5_PRIME CG44085 INTRON CG44085
X	6703045	X_6703045_SNP [dm3] X_6809012_SNP [dm6]	C	A	1.398e^-4	0.722	INTRON pod1
X	14071651	X_14071651_SNP [dm3] X_14177618_SNP [dm6]	G	C	1.405e^-4	0.723	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
3R	2424633	3R_2424633_SNP [dm3] 3R_6598911_SNP [dm6]	T	A	1.408e^-4	0.723	UPSTREAM CG1138 INTERGENIC
2L	7831307	2L_7831307_SNP [dm3] 2L_7831307_SNP [dm6]	A	C	1.411e^-4	0.723	INTRON mts
2L	13256294	2L_13256294_SNP [dm3] 2L_13256294_SNP [dm6]	G	T	1.416e^-4	0.724	NON_SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7581595	2L_7581595_SNP [dm3] 2L_7581595_SNP [dm6]	A	T	1.425e^-4	0.726	UPSTREAM Spn28B INTERGENIC
3R	10351327	3R_10351327_SNP [dm3] 3R_14525605_SNP [dm6]	T	C	1.437e^-4	0.727	INTRON Pde6
2L	10069496	2L_10069496_SNP [dm3] 2L_10069496_SNP [dm6]	C	T	1.439e^-4	0.727	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
2L	7824210	2L_7824210_SNP [dm3] 2L_7824210_SNP [dm6]	A	C	1.442e^-4	0.727	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17682351	X_17682351_SNP [dm3] X_17788318_SNP [dm6]	G	T	1.446e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6468101	2L_6468101_SNP [dm3] 2L_6468101_SNP [dm6]	A	T	1.447e^-4	0.727	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
X	2975635	X_2975635_SNP [dm3] X_3081602_SNP [dm6]	C	A	1.450e^-4	0.727	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2L	8839909	2L_8839909_SNP [dm3] 2L_8839909_SNP [dm6]	G	A	1.456e^-4	0.728	INTERGENIC
X	5010458	X_5010458_SNP [dm3] X_5116425_SNP [dm6]	G	A	1.460e^-4	0.728	INTRON rg & 1 other
3L	9279450	3L_9279450_SNP [dm3] 3L_9286350_SNP [dm6]	T	C	1.474e^-4	0.734	UTR_3_PRIME GluRIB
3R	16890781	3R_16890781_SNP [dm3] 3R_21065059_SNP [dm6]	C	T	1.503e^-4	0.744	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	13256292	2L_13256292_SNP [dm3] 2L_13256292_SNP [dm6]	T	C	1.506e^-4	0.744	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5917828	2R_5917828_SNP [dm3] 2R_10030323_SNP [dm6]	T	G	1.509e^-4	0.744	UTR_3_PRIME CG12128 INTRON CG1407
3R	27634376	3R_27634376_SNP [dm3] 3R_31808654_SNP [dm6]	G	T	1.511e^-4	0.744	INTRON CG11576
2R	11249334	2R_11249334_SNP [dm3] 2R_15361829_SNP [dm6]	G	A	1.518e^-4	0.745	INTRON unc-5	TF binding site mE1_TFBS_chinmo
X	17179908	X_17179908_SNP [dm3] X_17285875_SNP [dm6]	A	T	1.521e^-4	0.745	UTR_3_PRIME Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	506373	3L_506373_INS [dm3] 3L_506373_INS [dm6]	G	GA	1.534e^-4	0.747	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	11278427	2R_11278427_SNP [dm3] 2R_15390922_SNP [dm6]	G	A	1.537e^-4	0.747	INTERGENIC
3L	7187780	3L_7187780_SNP [dm3] 3L_7194680_SNP [dm6]	A	T	1.537e^-4	0.747	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2L	7588645	2L_7588645_SNP [dm3] 2L_7588645_SNP [dm6]	C	G	1.546e^-4	0.749	INTERGENIC
2L	7043487	2L_7043487_SNP [dm3] 2L_7043487_SNP [dm6]	A	G	1.555e^-4	0.751	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6468059	2L_6468059_SNP [dm3] 2L_6468059_SNP [dm6]	G	A	1.557e^-4	0.751	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	6468087	2L_6468087_SNP [dm3] 2L_6468087_SNP [dm6]	G	T	1.561e^-4	0.751	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	9824694	2L_9824694_SNP [dm3] 2L_9824694_SNP [dm6]	T	C	1.576e^-4	0.756	INTRON nAChRalpha6
3L	1299121	3L_1299121_SNP [dm3] 3L_1299121_SNP [dm6]	A	C	1.585e^-4	0.757	SYNONYMOUS_CODING scf UTR_5_PRIME scf DOWNSTREAM Rabex-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6468090	2L_6468090_MNP [dm3] 2L_6468090_MNP [dm6]	TGA	ATT	1.592e^-4	0.757	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	6468094	2L_6468094_DEL [dm3] 2L_6468094_DEL [dm6]	ACG	A	1.592e^-4	0.757	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
X	14071774	X_14071774_SNP [dm3] X_14177741_SNP [dm6]	C	T	1.594e^-4	0.757	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
3L	5300850	3L_5300850_SNP [dm3] 3L_5307750_SNP [dm6]	C	T	1.599e^-4	0.758	INTERGENIC
2L	2420478	2L_2420478_SNP [dm3] 2L_2420478_SNP [dm6]	A	T	1.607e^-4	0.759	UPSTREAM CG34447 & 1 other INTERGENIC
2R	6852164	2R_6852164_SNP [dm3] 2R_10964659_SNP [dm6]	G	C	1.611e^-4	0.759	INTERGENIC
X	9975373	X_9975373_DEL [dm3] X_10081340_DEL [dm6]	TGCCCACACCGTGTTG...	T	1.618e^-4	0.76	CODON_DELETION ZAP3	TF binding site mE1_TFBS_HSA
3L	15854414	3L_15854414_DEL [dm3] 3L_15861314_DEL [dm6]	AAAAGGATGCTGCCATGCTA...	A	1.620e^-4	0.76	INTRON pHCl
X	4207657	X_4207657_SNP [dm3] X_4313624_SNP [dm6]	A	C	1.625e^-4	0.76	DOWNSTREAM mei-9 INTRON CR44957
2L	6468104	2L_6468104_INS [dm3] 2L_6468104_INS [dm6]	A	TC	1.648e^-4	0.766	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	5877294	2L_5877294_SNP [dm3] 2L_5877294_SNP [dm6]	G	C	1.653e^-4	0.766	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6192902	2R_6192902_SNP [dm3] 2R_10305397_SNP [dm6]	T	C	1.655e^-4	0.766	INTRON CAP
X	14071759	X_14071759_SNP [dm3] X_14177726_SNP [dm6]	G	T	1.655e^-4	0.766	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
2R	6564634	2R_6564634_SNP [dm3] 2R_10677129_SNP [dm6]	G	T	1.664e^-4	0.769	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9835537	2L_9835537_SNP [dm3] 2L_9835537_SNP [dm6]	T	C	1.670e^-4	0.769	INTRON nAChRalpha6
3R	22608576	3R_22608576_SNP [dm3] 3R_26782854_SNP [dm6]	G	A	1.676e^-4	0.771	DOWNSTREAM CG42789 INTERGENIC
3L	5300989	3L_5300989_SNP [dm3] 3L_5307889_SNP [dm6]	A	G	1.682e^-4	0.771	INTERGENIC
3L	14561293	3L_14561293_SNP [dm3] 3L_14568193_SNP [dm6]	T	C	1.685e^-4	0.771	DOWNSTREAM CG42758 INTERGENIC
2R	13903694	2R_13903694_DEL [dm3] 2R_18016189_DEL [dm6]	AT	A	1.698e^-4	0.775	INTERGENIC
2L	17342374	2L_17342374_SNP [dm3] 2L_17342374_SNP [dm6]	A	G	1.712e^-4	0.778	INTERGENIC
2L	2422682	2L_2422682_SNP [dm3] 2L_2422682_SNP [dm6]	G	A	1.712e^-4	0.778	UTR_3_PRIME CG9886
X	2873176	X_2873176_SNP [dm3] X_2979143_SNP [dm6]	G	A	1.731e^-4	0.784	INTRON kirre	regulatory region REDfly_CRMs
2R	9404841	2R_9404841_DEL [dm3] 2R_13517336_DEL [dm6]	CC	C	1.741e^-4	0.786	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
3R	7854661	3R_7854661_SNP [dm3] 3R_12028939_SNP [dm6]	T	C	1.744e^-4	0.786	SYNONYMOUS_CODING CG42505 UTR_3_PRIME CG42504 & 1 other INTRON CG31358	TF binding site mE1_TFBS_chinmo
3R	25802803	3R_25802803_SNP [dm3] 3R_29977081_SNP [dm6]	T	C	1.752e^-4	0.786	INTERGENIC
3L	11411488	3L_11411488_SNP [dm3] 3L_11418388_SNP [dm6]	A	T	1.752e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22890174	3R_22890174_SNP [dm3] 3R_27064452_SNP [dm6]	T	C	1.755e^-4	0.786	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	1.762e^-4	0.787	INTERGENIC
X	11951575	X_11951575_SNP [dm3] X_12057542_SNP [dm6]	G	A	1.784e^-4	0.795	UPSTREAM Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6468109	2L_6468109_SNP [dm3] 2L_6468109_SNP [dm6]	T	C	1.797e^-4	0.798	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	7584913	2L_7584913_SNP [dm3] 2L_7584913_SNP [dm6]	A	T	1.807e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16353975	3L_16353975_DEL [dm3] 3L_16360875_DEL [dm6]	GTGGTACACAAATCAGGG...	G	1.815e^-4	0.798	INTRON CG45057
2R	9404840	2R_9404840_SNP [dm3] 2R_13517335_SNP [dm6]	C	T	1.815e^-4	0.798	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
2R	9909448	2R_9909448_SNP [dm3] 2R_14021943_SNP [dm6]	T	C	1.820e^-4	0.798	INTRON mam
2L	7036798	2L_7036798_SNP [dm3] 2L_7036798_SNP [dm6]	G	T	1.823e^-4	0.798	INTRON CG11266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2420440	2L_2420440_INS [dm3] 2L_2420440_INS [dm6]	T	TGACGAAGAGCGCAAGGAAG...	1.827e^-4	0.798	UPSTREAM CG34447 & 1 other INTERGENIC
3L	2806289	3L_2806289_SNP [dm3] 3L_2806289_SNP [dm6]	A	T	1.833e^-4	0.798	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	2418568	2L_2418568_SNP [dm3] 2L_2418568_SNP [dm6]	C	T	1.838e^-4	0.798	SYNONYMOUS_CODING CG34447 UPSTREAM CG34448
2L	7938732	2L_7938732_SNP [dm3] 2L_7938732_SNP [dm6]	A	G	1.838e^-4	0.798	INTRON Snoo
2L	7938733	2L_7938733_SNP [dm3] 2L_7938733_SNP [dm6]	C	T	1.838e^-4	0.798	INTRON Snoo
3R	26199770	3R_26199770_SNP [dm3] 3R_30374048_SNP [dm6]	A	T	1.847e^-4	0.798	INTERGENIC
3L	10480049	3L_10480049_SNP [dm3] 3L_10486949_SNP [dm6]	G	A	1.847e^-4	0.798	INTRON A2bp1
3L	12042461	3L_12042461_SNP [dm3] 3L_12049361_SNP [dm6]	C	T	1.854e^-4	0.798	INTRON rols
2L	7586910	2L_7586910_SNP [dm3] 2L_7586910_SNP [dm6]	G	T	1.869e^-4	0.798	INTERGENIC
3R	10345747	3R_10345747_SNP [dm3] 3R_14520025_SNP [dm6]	G	T	1.869e^-4	0.798	INTRON Pde6
2R	16074725	2R_16074725_SNP [dm3] 2R_20187220_SNP [dm6]	A	T	1.875e^-4	0.798	INTERGENIC
2L	7036791	2L_7036791_SNP [dm3] 2L_7036791_SNP [dm6]	T	C	1.876e^-4	0.798	INTRON CG11266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7036796	2L_7036796_SNP [dm3] 2L_7036796_SNP [dm6]	G	T	1.876e^-4	0.798	INTRON CG11266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7039593	2L_7039593_SNP [dm3] 2L_7039593_SNP [dm6]	G	T	1.876e^-4	0.798	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8445886	2L_8445886_SNP [dm3] 2L_8445886_SNP [dm6]	A	T	1.882e^-4	0.799	UTR_3_PRIME U26 DOWNSTREAM U26 & 1 other
2L	12174765	2L_12174765_SNP [dm3] 2L_12174765_SNP [dm6]	T	C	1.893e^-4	0.799	UPSTREAM aret & 1 other DOWNSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	8327538	2L_8327538_SNP [dm3] 2L_8327538_SNP [dm6]	A	G	1.895e^-4	0.799	UTR_5_PRIME CG14275
3R	9592286	3R_9592286_SNP [dm3] 3R_13766564_SNP [dm6]	C	G	1.896e^-4	0.799	UPSTREAM Cht5 INTRON CG9312
3L	10480048	3L_10480048_SNP [dm3] 3L_10486948_SNP [dm6]	G	A	1.903e^-4	0.799	INTRON A2bp1
3R	27209656	3R_27209656_SNP [dm3] 3R_31383934_SNP [dm6]	T	G	1.904e^-4	0.799	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
X	18936177	X_18936177_SNP [dm3] X_19042144_SNP [dm6]	T	A	1.914e^-4	0.799	INTERGENIC
X	9299333	X_9299333_SNP [dm3] X_9405300_SNP [dm6]	T	C	1.918e^-4	0.799	INTRON mgl
3L	7770743	3L_7770743_SNP [dm3] 3L_7777643_SNP [dm6]	C	T	1.918e^-4	0.799	UTR_3_PRIME CG32369 DOWNSTREAM CG32369	regulatory region REDfly_CRMs
3R	10366713	3R_10366713_SNP [dm3] 3R_14540991_SNP [dm6]	T	A	1.925e^-4	0.799	INTRON Pde6
3L	8804157	3L_8804157_SNP [dm3] 3L_8811057_SNP [dm6]	T	C	1.927e^-4	0.799	SYNONYMOUS_CODING CG13309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10340425	3R_10340425_SNP [dm3] 3R_14514703_SNP [dm6]	G	T	1.935e^-4	0.799	UTR_3_PRIME Pde6
3R	19009003	3R_19009003_SNP [dm3] 3R_23183281_SNP [dm6]	T	A	1.943e^-4	0.799	INTRON Irk1	TF binding site mE1_TFBS_chinmo
2L	15523712	2L_15523712_SNP [dm3] 2L_15523712_SNP [dm6]	C	T	1.950e^-4	0.799	EXON CR43761
X	17682006	X_17682006_INS [dm3] X_17787973_INS [dm6]	T	TCCTTTGTTTCGCTAATTTT...	1.957e^-4	0.799	INTERGENIC
3L	16363652	3L_16363652_SNP [dm3] 3L_16370552_SNP [dm6]	C	T	1.968e^-4	0.799	SYNONYMOUS_CODING CG18814 DOWNSTREAM roq
X	18845865	X_18845865_SNP [dm3] X_18951832_SNP [dm6]	T	A	1.968e^-4	0.799	INTRON CG43759
3L	7176705	3L_7176705_SNP [dm3] 3L_7183605_SNP [dm6]	T	C	1.974e^-4	0.799	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi
3R	10345916	3R_10345916_SNP [dm3] 3R_14520194_SNP [dm6]	T	A	1.975e^-4	0.799	UPSTREAM Cyp313a1 INTRON Pde6
3R	19106783	3R_19106783_SNP [dm3] 3R_23281061_SNP [dm6]	T	A	1.976e^-4	0.799	UPSTREAM Cdc16 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
X	16987673	X_16987673_SNP [dm3] X_17093640_SNP [dm6]	G	T	1.985e^-4	0.799	INTRON CG16700 & 1 other
2R	13178848	2R_13178848_SNP [dm3] 2R_17291343_SNP [dm6]	T	C	1.991e^-4	0.799	INTRON mbl
2L	13023890	2L_13023890_SNP [dm3] 2L_13023890_SNP [dm6]	C	G	1.995e^-4	0.799	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad
2R	3289908	2R_3289908_SNP [dm3] 2R_7402403_SNP [dm6]	A	C	2.004e^-4	0.799	UPSTREAM CG43123 DOWNSTREAM CG11112 & 1 other INTRON Eaf
3R	18814538	3R_18814538_SNP [dm3] 3R_22988816_SNP [dm6]	A	G	2.011e^-4	0.799	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
2L	2420589	2L_2420589_SNP [dm3] 2L_2420589_SNP [dm6]	G	A	2.013e^-4	0.799	UPSTREAM CG34447 & 1 other INTERGENIC
3R	19410683	3R_19410683_SNP [dm3] 3R_23584961_SNP [dm6]	A	T	2.016e^-4	0.799	INTERGENIC
3L	10428903	3L_10428903_SNP [dm3] 3L_10435803_SNP [dm6]	C	G	2.019e^-4	0.799	INTERGENIC
2R	9909483	2R_9909483_SNP [dm3] 2R_14021978_SNP [dm6]	A	C	2.032e^-4	0.799	INTRON mam
2R	6189697	2R_6189697_SNP [dm3] 2R_10302192_SNP [dm6]	C	T	2.036e^-4	0.799	UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	19100769	2R_19100769_SNP [dm3] 2R_23213246_SNP [dm6]	T	A	2.043e^-4	0.799	INTERGENIC
2R	6192919	2R_6192919_SNP [dm3] 2R_10305414_SNP [dm6]	A	T	2.051e^-4	0.799	INTRON CAP
2L	7589170	2L_7589170_SNP [dm3] 2L_7589170_SNP [dm6]	A	C	2.052e^-4	0.799	INTERGENIC
3R	10349741	3R_10349741_SNP [dm3] 3R_14524019_SNP [dm6]	G	A	2.059e^-4	0.799	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	10392175	3R_10392175_SNP [dm3] 3R_14566453_SNP [dm6]	A	C	2.064e^-4	0.799	SYNONYMOUS_CODING CG14852 UTR_3_PRIME CG31313 DOWNSTREAM CG31313
3R	10349734	3R_10349734_SNP [dm3] 3R_14524012_SNP [dm6]	C	T	2.073e^-4	0.799	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	9790531	3R_9790531_SNP [dm3] 3R_13964809_SNP [dm6]	G	A	2.074e^-4	0.799	UPSTREAM Orc2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	27146744	3R_27146744_SNP [dm3] 3R_31321022_SNP [dm6]	C	A	2.076e^-4	0.799	INTRON CG34347
2L	7829897	2L_7829897_SNP [dm3] 2L_7829897_SNP [dm6]	T	C	2.077e^-4	0.799	INTRON mts	TF binding site BDTNP1_TFBS_dl
2R	11279552	2R_11279552_DEL [dm3] 2R_15392047_DEL [dm6]	CTCGCATCC	C	2.080e^-4	0.799	INTERGENIC
3R	23828725	3R_23828725_SNP [dm3] 3R_28003003_SNP [dm6]	T	G	2.082e^-4	0.799	INTERGENIC
2L	7822300	2L_7822300_SNP [dm3] 2L_7822300_SNP [dm6]	C	G	2.086e^-4	0.799	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl
2L	21977819	2L_21977819_SNP [dm3] 2L_21977819_SNP [dm6]	T	A	2.091e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16890372	3R_16890372_SNP [dm3] 3R_21064650_SNP [dm6]	G	A	2.094e^-4	0.799	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6809288	2L_6809288_SNP [dm3] 2L_6809288_SNP [dm6]	A	G	2.095e^-4	0.799	INTERGENIC
3R	1910846	3R_1910846_SNP [dm3] 3R_6085124_SNP [dm6]	A	G	2.097e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1584266	3L_1584266_SNP [dm3] 3L_1584266_SNP [dm6]	G	C	2.100e^-4	0.799	INTRON CG13917	TF binding site mE1_TFBS_HSA
3R	9592457	3R_9592457_SNP [dm3] 3R_13766735_SNP [dm6]	A	G	2.102e^-4	0.799	UPSTREAM Cht5 INTRON CG9312
2R	9909467	2R_9909467_SNP [dm3] 2R_14021962_SNP [dm6]	T	C	2.103e^-4	0.799	INTRON mam
3R	9592285	3R_9592285_SNP [dm3] 3R_13766563_SNP [dm6]	A	G	2.104e^-4	0.799	UPSTREAM Cht5 INTRON CG9312
3R	24265813	3R_24265813_SNP [dm3] 3R_28440091_SNP [dm6]	G	A	2.108e^-4	0.799	INTRON beat-VI
X	7484148	X_7484148_SNP [dm3] X_7590115_SNP [dm6]	C	T	2.109e^-4	0.799	INTERGENIC	regulatory region REDfly_CRMs
3L	17336078	3L_17336078_SNP [dm3] 3L_17342978_SNP [dm6]	A	G	2.115e^-4	0.799	SYNONYMOUS_CODING brv2
3L	4826874	3L_4826874_SNP [dm3] 3L_4826874_SNP [dm6]	C	T	2.118e^-4	0.799	SYNONYMOUS_CODING Aats-leu	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	16133059	X_16133059_SNP [dm3] X_16239026_SNP [dm6]	A	T	2.119e^-4	0.799	INTERGENIC
3R	14038719	3R_14038719_SNP [dm3] 3R_18212997_SNP [dm6]	T	C	2.121e^-4	0.799	SYNONYMOUS_CODING CG7985
2R	13518272	2R_13518272_SNP [dm3] 2R_17630767_SNP [dm6]	T	A	2.122e^-4	0.799	INTRON CG10936 & 1 other
2R	9404864	2R_9404864_SNP [dm3] 2R_13517359_SNP [dm6]	G	T	2.145e^-4	0.804	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
2L	11486785	2L_11486785_SNP [dm3] 2L_11486785_SNP [dm6]	A	C	2.146e^-4	0.804	UTR_3_PRIME CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13716243	2R_13716243_SNP [dm3] 2R_17828738_SNP [dm6]	A	G	2.148e^-4	0.804	SPLICE_SITE_REGION grh INTRON grh
3R	9632687	3R_9632687_SNP [dm3] 3R_13806965_SNP [dm6]	C	T	2.160e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15523711	2L_15523711_SNP [dm3] 2L_15523711_SNP [dm6]	G	C	2.160e^-4	0.804	EXON CR43761
X	14231017	X_14231017_SNP [dm3] X_14336984_SNP [dm6]	T	C	2.161e^-4	0.804	INTRON dpr8
X	2874433	X_2874433_SNP [dm3] X_2980400_SNP [dm6]	T	G	2.177e^-4	0.804	INTRON kirre	regulatory region REDfly_CRMs
3R	16890479	3R_16890479_SNP [dm3] 3R_21064757_SNP [dm6]	T	G	2.177e^-4	0.804	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11277943	2R_11277943_SNP [dm3] 2R_15390438_SNP [dm6]	G	A	2.180e^-4	0.804	INTERGENIC
2R	19302206	2R_19302206_SNP [dm3] 2R_23414683_SNP [dm6]	A	G	2.184e^-4	0.804	SYNONYMOUS_CODING CG9812	TF binding site mE1_TFBS_chinmo
3L	1298884	3L_1298884_SNP [dm3] 3L_1298884_SNP [dm6]	C	T	2.185e^-4	0.804	SYNONYMOUS_CODING scf UPSTREAM scf DOWNSTREAM Rabex-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6674839	2R_6674839_SNP [dm3] 2R_10787334_SNP [dm6]	A	G	2.187e^-4	0.804	UPSTREAM CR44301 INTRON CG33144
3L	917491	3L_917491_SNP [dm3] 3L_917491_SNP [dm6]	C	T	2.209e^-4	0.811	INTRON Glut1
2R	13716344	2R_13716344_SNP [dm3] 2R_17828839_SNP [dm6]	A	G	2.230e^-4	0.817	SYNONYMOUS_CODING grh
2L	11692575	2L_11692575_SNP [dm3] 2L_11692575_SNP [dm6]	T	A	2.239e^-4	0.817	INTERGENIC
2R	11277949	2R_11277949_SNP [dm3] 2R_15390444_SNP [dm6]	G	A	2.239e^-4	0.817	INTERGENIC
3L	749066	3L_749066_SNP [dm3] 3L_749066_SNP [dm6]	T	C	2.246e^-4	0.817	UPSTREAM emc INTRON hng3	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	16352423	3L_16352423_DEL [dm3] 3L_16359323_DEL [dm6]	AA	A	2.258e^-4	0.817	UTR_5_PRIME CG45057 INTRON CG45057	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
X	19582432	X_19582432_SNP [dm3] X_19688399_SNP [dm6]	G	A	2.259e^-4	0.817	SYNONYMOUS_CODING CG14227 DOWNSTREAM Ubqn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2420435	2L_2420435_MNP [dm3] 2L_2420435_MNP [dm6]	TCGT	GATG	2.266e^-4	0.817	UPSTREAM CG34447 & 1 other INTERGENIC
2L	2420976	2L_2420976_SNP [dm3] 2L_2420976_SNP [dm6]	C	T	2.266e^-4	0.817	SYNONYMOUS_CODING CG9886 UPSTREAM CG34447
2L	2880038	2L_2880038_SNP [dm3] 2L_2880038_SNP [dm6]	C	G	2.266e^-4	0.817	DOWNSTREAM NTPase INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	1556223	3L_1556223_SNP [dm3] 3L_1556223_SNP [dm6]	G	A	2.268e^-4	0.817	SPLICE_SITE_REGION CG12099 DOWNSTREAM Cct2 INTRON CG12099	TF binding site mE1_TFBS_cad
2L	15593926	2L_15593926_SNP [dm3] 2L_15593926_SNP [dm6]	G	A	2.281e^-4	0.819	INTERGENIC
2L	7830863	2L_7830863_SNP [dm3] 2L_7830863_SNP [dm6]	A	C	2.287e^-4	0.819	SYNONYMOUS_CODING mts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16890396	3R_16890396_SNP [dm3] 3R_21064674_SNP [dm6]	A	G	2.291e^-4	0.819	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1587875	3L_1587875_SNP [dm3] 3L_1587875_SNP [dm6]	C	T	2.292e^-4	0.819	INTRON CG13917	TF binding site BDTNP1_TFBS_z
2L	16336136	2L_16336136_SNP [dm3] 2L_16336136_SNP [dm6]	T	A	2.298e^-4	0.819	NON_SYNONYMOUS_CODING CG31817
2R	6852179	2R_6852179_DEL [dm3] 2R_10964674_DEL [dm6]	GGACAATTGTTAAC...	G	2.302e^-4	0.819	INTERGENIC
2L	2421510	2L_2421510_SNP [dm3] 2L_2421510_SNP [dm6]	C	A	2.310e^-4	0.819	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19783329	2L_19783329_SNP [dm3] 2L_19783329_SNP [dm6]	G	A	2.310e^-4	0.819	INTRON CdGAPr
3R	16886573	3R_16886573_SNP [dm3] 3R_21060851_SNP [dm6]	G	A	2.313e^-4	0.819	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8291465	2L_8291465_SNP [dm3] 2L_8291465_SNP [dm6]	C	T	2.332e^-4	0.819	DOWNSTREAM tRNA:K5:29A INTRON Btk29A
3L	8868973	3L_8868973_SNP [dm3] 3L_8875873_SNP [dm6]	A	G	2.338e^-4	0.819	INTRON dally
3R	3092278	3R_3092278_SNP [dm3] 3R_7266556_SNP [dm6]	G	A	2.340e^-4	0.819	UPSTREAM Gld INTRON Syt4	TF binding site BDTNP1_TFBS_twi
3L	11419511	3L_11419511_SNP [dm3] 3L_11426411_SNP [dm6]	T	C	2.341e^-4	0.819	DOWNSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10451032	X_10451032_SNP [dm3] X_10556999_SNP [dm6]	G	T	2.348e^-4	0.819	INTRON spri
X	16591534	X_16591534_SNP [dm3] X_16697501_SNP [dm6]	T	A	2.348e^-4	0.819	INTRON CG4678	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	16336328	2L_16336328_SNP [dm3] 2L_16336328_SNP [dm6]	T	C	2.353e^-4	0.819	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3R	9946305	3R_9946305_SNP [dm3] 3R_14120583_SNP [dm6]	A	C	2.354e^-4	0.819	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18828655	3L_18828655_DEL [dm3] 3L_18835555_DEL [dm6]	TT	T	2.355e^-4	0.819	INTRON Indy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6858513	X_6858513_SNP [dm3] X_6964480_SNP [dm6]	A	T	2.366e^-4	0.822	INTRON CG32732 & 1 other
3R	5018482	3R_5018482_SNP [dm3] 3R_9192760_SNP [dm6]	C	T	2.379e^-4	0.825	INTRON pum
2R	16598528	2R_16598528_SNP [dm3] 2R_20711023_SNP [dm6]	T	A	2.406e^-4	0.831	INTRON dpr
2L	7047466	2L_7047466_SNP [dm3] 2L_7047466_SNP [dm6]	A	G	2.413e^-4	0.831	INTRON milt
X	20281059	X_20281059_SNP [dm3] X_20410032_SNP [dm6]	C	A	2.418e^-4	0.831	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19241998	3R_19241998_SNP [dm3] 3R_23416276_SNP [dm6]	C	T	2.421e^-4	0.831	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2L	2420628	2L_2420628_DEL [dm3] 2L_2420628_DEL [dm6]	TTCT	T	2.424e^-4	0.831	UPSTREAM CG34447 & 1 other INTERGENIC
2L	11248882	2L_11248882_SNP [dm3] 2L_11248882_SNP [dm6]	G	T	2.426e^-4	0.831	INTRON ab	TF binding site BDTNP1_TFBS_dl
2L	7585661	2L_7585661_SNP [dm3] 2L_7585661_SNP [dm6]	A	G	2.428e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11949549	X_11949549_SNP [dm3] X_12055516_SNP [dm6]	T	A	2.431e^-4	0.831	NON_SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
2L	7606479	2L_7606479_SNP [dm3] 2L_7606479_SNP [dm6]	T	C	2.439e^-4	0.832	INTRON Cyp4d21
3R	24265775	3R_24265775_SNP [dm3] 3R_28440053_SNP [dm6]	T	A	2.448e^-4	0.833	INTRON beat-VI
2L	4836833	2L_4836833_SNP [dm3] 2L_4836833_SNP [dm6]	C	T	2.465e^-4	0.838	SYNONYMOUS_CODING tank	TF binding site mE1_TFBS_sens
2R	15332113	2R_15332113_SNP [dm3] 2R_19444608_SNP [dm6]	T	C	2.474e^-4	0.839	DOWNSTREAM RpL11 & 1 other INTRON Arl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5300310	2R_5300310_SNP [dm3] 2R_9412805_SNP [dm6]	G	A	2.484e^-4	0.839	INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17347831	2R_17347831_SNP [dm3] 2R_21460326_SNP [dm6]	A	G	2.486e^-4	0.839	INTRON Sdc
2R	9909398	2R_9909398_SNP [dm3] 2R_14021893_SNP [dm6]	A	G	2.496e^-4	0.839	INTRON mam
2L	10514537	2L_10514537_SNP [dm3] 2L_10514537_SNP [dm6]	C	T	2.497e^-4	0.839	INTRON Fatp & 1 other
3L	18828650	3L_18828650_SNP [dm3] 3L_18835550_SNP [dm6]	A	G	2.519e^-4	0.839	INTRON Indy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19499763	2R_19499763_SNP [dm3] 2R_23612240_SNP [dm6]	T	C	2.521e^-4	0.839	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3223436	2L_3223436_INS [dm3] 2L_3223436_INS [dm6]	A	ATTAA	2.528e^-4	0.839	INTERGENIC
3L	14815804	3L_14815804_SNP [dm3] 3L_14822704_SNP [dm6]	A	G	2.532e^-4	0.839	INTRON CG17839
3R	20960361	3R_20960361_SNP [dm3] 3R_25134639_SNP [dm6]	A	T	2.534e^-4	0.839	INTRON Bili
2L	6122995	2L_6122995_SNP [dm3] 2L_6122995_SNP [dm6]	C	A	2.549e^-4	0.839	SYNONYMOUS_CODING stai
3L	16350214	3L_16350214_SNP [dm3] 3L_16357114_SNP [dm6]	C	G	2.551e^-4	0.839	UPSTREAM CG45057 INTRON CG45057
3L	5119937	3L_5119937_SNP [dm3] 3L_5126837_SNP [dm6]	T	A	2.559e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	2421553	2L_2421553_SNP [dm3] 2L_2421553_SNP [dm6]	G	A	2.563e^-4	0.839	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2420636	2L_2420636_SNP [dm3] 2L_2420636_SNP [dm6]	G	T	2.564e^-4	0.839	UPSTREAM CG34447 & 1 other INTERGENIC
X	6111282	X_6111282_SNP [dm3] X_6217249_SNP [dm6]	G	C	2.571e^-4	0.839	DOWNSTREAM Btd INTERGENIC
X	17682332	X_17682332_SNP [dm3] X_17788299_SNP [dm6]	C	T	2.583e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	917469	3L_917469_SNP [dm3] 3L_917469_SNP [dm6]	T	G	2.600e^-4	0.839	INTRON Glut1
2L	2326415	2L_2326415_SNP [dm3] 2L_2326415_SNP [dm6]	A	G	2.605e^-4	0.839	INTRON CG9967 & 1 other
2R	11267142	2R_11267142_SNP [dm3] 2R_15379637_SNP [dm6]	G	C	2.605e^-4	0.839	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11267202	2R_11267202_MNP [dm3] 2R_15379697_MNP [dm6]	AAG	CCT	2.605e^-4	0.839	NON_SYNONYMOUS_CODING dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10584856	2R_10584856_SNP [dm3] 2R_14697351_SNP [dm6]	A	G	2.606e^-4	0.839	INTRON mspo
3L	7177134	3L_7177134_SNP [dm3] 3L_7184034_SNP [dm6]	T	C	2.607e^-4	0.839	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7177137	3L_7177137_SNP [dm3] 3L_7184037_SNP [dm6]	G	A	2.607e^-4	0.839	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14240183	2R_14240183_SNP [dm3] 2R_18352678_SNP [dm6]	C	T	2.610e^-4	0.839	INTRON sbb	TF binding site mE1_TFBS_HSA
2R	14260247	2R_14260247_SNP [dm3] 2R_18372742_SNP [dm6]	C	A	2.612e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	1247475	2L_1247475_SNP [dm3] 2L_1247475_SNP [dm6]	T	C	2.615e^-4	0.839	INTERGENIC
2R	11632867	2R_11632867_SNP [dm3] 2R_15745362_SNP [dm6]	G	A	2.615e^-4	0.839	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27613999	3R_27613999_SNP [dm3] 3R_31788277_SNP [dm6]	C	T	2.617e^-4	0.839	UTR_3_PRIME faf INTRON faf	TF binding site mE1_TFBS_cad
3R	7852430	3R_7852430_SNP [dm3] 3R_12026708_SNP [dm6]	G	A	2.621e^-4	0.839	INTERGENIC
2L	7606135	2L_7606135_SNP [dm3] 2L_7606135_SNP [dm6]	T	A	2.622e^-4	0.839	SYNONYMOUS_CODING Cyp4d21
3R	16890210	3R_16890210_SNP [dm3] 3R_21064488_SNP [dm6]	G	A	2.623e^-4	0.839	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1743926	3L_1743926_SNP [dm3] 3L_1743926_SNP [dm6]	A	G	2.625e^-4	0.839	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4433648	X_4433648_SNP [dm3] X_4539615_SNP [dm6]	G	T	2.629e^-4	0.839	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5688293	X_5688293_SNP [dm3] X_5794260_SNP [dm6]	C	G	2.630e^-4	0.839	UTR_3_PRIME CG12239	TF binding site mE1_TFBS_sens
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	2.632e^-4	0.839	INTRON TfAP-2
2R	9909596	2R_9909596_SNP [dm3] 2R_14022091_SNP [dm6]	T	G	2.634e^-4	0.839	INTRON mam
2L	12361231	2L_12361231_SNP [dm3] 2L_12361231_SNP [dm6]	T	A	2.638e^-4	0.839	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15006933	2L_15006933_SNP [dm3] 2L_15006933_SNP [dm6]	G	A	2.651e^-4	0.84	SYNONYMOUS_CODING l_2_35Be UPSTREAM NC2beta DOWNSTREAM dyn-p25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12972312	2L_12972312_SNP [dm3] 2L_12972312_SNP [dm6]	C	A	2.659e^-4	0.84	INTERGENIC
3R	18184885	3R_18184885_SNP [dm3] 3R_22359163_SNP [dm6]	G	T	2.660e^-4	0.84	INTRON Sar1
3R	3597117	3R_3597117_SNP [dm3] 3R_7771395_SNP [dm6]	C	T	2.661e^-4	0.84	SPLICE_SITE_REGION CG11286 SYNONYMOUS_CODING CG11286
3R	24062703	3R_24062703_SNP [dm3] 3R_28236981_SNP [dm6]	C	T	2.674e^-4	0.841	DOWNSTREAM CR45041 INTRON CG34354
2L	8314338	2L_8314338_SNP [dm3] 2L_8314338_SNP [dm6]	G	A	2.680e^-4	0.841	SPLICE_SITE_REGION CG7806 INTRON CG7806
3L	549480	3L_549480_SNP [dm3] 3L_549480_SNP [dm6]	A	T	2.681e^-4	0.841	INTRON hipk	TF binding site BDTNP1_TFBS_dl
3R	10384912	3R_10384912_SNP [dm3] 3R_14559190_SNP [dm6]	C	G	2.682e^-4	0.841	UTR_3_PRIME CG14854 UPSTREAM Pde6
3R	24265779	3R_24265779_SNP [dm3] 3R_28440057_SNP [dm6]	C	T	2.697e^-4	0.845	INTRON beat-VI
2R	6823463	2R_6823463_SNP [dm3] 2R_10935958_SNP [dm6]	T	C	2.703e^-4	0.845	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10449930	X_10449930_SNP [dm3] X_10555897_SNP [dm6]	A	T	2.718e^-4	0.845	UTR_5_PRIME spri UPSTREAM spri INTRON spri
X	20151615	X_20151615_SNP [dm3] X_20280588_SNP [dm6]	G	A	2.723e^-4	0.845	INTERGENIC
3L	16926258	3L_16926258_SNP [dm3] 3L_16933158_SNP [dm6]	C	T	2.724e^-4	0.845	INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	15479858	2R_15479858_SNP [dm3] 2R_19592353_SNP [dm6]	T	A	2.732e^-4	0.845	INTRON sm
X	12499856	X_12499856_SNP [dm3] X_12605823_SNP [dm6]	A	T	2.740e^-4	0.845	SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
2L	10626624	2L_10626624_SNP [dm3] 2L_10626624_SNP [dm6]	C	A	2.741e^-4	0.845	INTRON Trim9
3R	10349374	3R_10349374_SNP [dm3] 3R_14523652_SNP [dm6]	T	A	2.741e^-4	0.845	SYNONYMOUS_CODING Pde6 DOWNSTREAM Cyp313a1
X	5096286	X_5096286_SNP [dm3] X_5202253_SNP [dm6]	C	A	2.742e^-4	0.845	INTRON rg & 1 other
2L	7368953	2L_7368953_SNP [dm3] 2L_7368953_SNP [dm6]	G	A	2.749e^-4	0.845	DOWNSTREAM CR44063 INTRON Wnt10
3R	22909388	3R_22909388_SNP [dm3] 3R_27083666_SNP [dm6]	G	A	2.752e^-4	0.845	SYNONYMOUS_CODING Cpr97Ea DOWNSTREAM CG14257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9242044	X_9242044_SNP [dm3] X_9348011_SNP [dm6]	G	A	2.754e^-4	0.845	INTRON CG34449
2L	2420443	2L_2420443_INS [dm3] 2L_2420443_INS [dm6]	A	ACTTAAGAAACTCCTTG...	2.760e^-4	0.845	UPSTREAM CG34447 & 1 other INTERGENIC
2R	18458905	2R_18458905_SNP [dm3] 2R_22571400_SNP [dm6]	A	G	2.767e^-4	0.845	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9549304	3R_9549304_SNP [dm3] 3R_13723582_SNP [dm6]	G	A	2.776e^-4	0.845	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	2421846	2L_2421846_SNP [dm3] 2L_2421846_SNP [dm6]	C	G	2.777e^-4	0.845	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23194036	3R_23194036_SNP [dm3] 3R_27368314_SNP [dm6]	C	G	2.777e^-4	0.845	DOWNSTREAM CR43476 INTRON CG42534 EXON CR43476	TF binding site mE1_TFBS_chinmo
2R	17000802	2R_17000802_SNP [dm3] 2R_21113297_SNP [dm6]	A	T	2.781e^-4	0.845	INTRON ktub
2R	15137530	2R_15137530_SNP [dm3] 2R_19250025_SNP [dm6]	A	G	2.786e^-4	0.845	SYNONYMOUS_CODING wbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
2L	5891053	2L_5891053_SNP [dm3] 2L_5891053_SNP [dm6]	G	A	2.788e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	2.793e^-4	0.845	INTRON CG34347
2R	6658026	2R_6658026_SNP [dm3] 2R_10770521_SNP [dm6]	A	G	2.799e^-4	0.845	INTRON CG33144
2L	14693008	2L_14693008_SNP [dm3] 2L_14693008_SNP [dm6]	T	A	2.801e^-4	0.845	INTERGENIC
3R	14344624	3R_14344624_SNP [dm3] 3R_18518902_SNP [dm6]	C	G	2.816e^-4	0.847	INTRON fru
3L	7920101	3L_7920101_DEL [dm3] 3L_7927001_DEL [dm6]	AGTCTTT	A	2.822e^-4	0.847	INTRON syd
2L	6468100	2L_6468100_SNP [dm3] 2L_6468100_SNP [dm6]	G	A	2.822e^-4	0.847	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	11571349	2L_11571349_SNP [dm3] 2L_11571349_SNP [dm6]	G	T	2.832e^-4	0.847	INTERGENIC
3L	6320493	3L_6320493_SNP [dm3] 3L_6327393_SNP [dm6]	C	A	2.837e^-4	0.847	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6692834	3L_6692834_SNP [dm3] 3L_6699734_SNP [dm6]	G	T	2.838e^-4	0.847	INTRON SP1173
2R	6192807	2R_6192807_SNP [dm3] 2R_10305302_SNP [dm6]	A	G	2.839e^-4	0.847	INTRON CAP
2L	8322036	2L_8322036_SNP [dm3] 2L_8322036_SNP [dm6]	C	T	2.851e^-4	0.848	UTR_3_PRIME CG7781 DOWNSTREAM CG7787
2L	7799232	2L_7799232_SNP [dm3] 2L_7799232_SNP [dm6]	C	T	2.852e^-4	0.848	UPSTREAM r2d2 INTRON Herp	TF binding site BDTNP1_TFBS_dl
3L	21791412	3L_21791412_SNP [dm3] 3L_21798312_SNP [dm6]	G	T	2.870e^-4	0.852	INTERGENIC
2R	11249339	2R_11249339_SNP [dm3] 2R_15361834_SNP [dm6]	G	T	2.884e^-4	0.853	INTRON unc-5	TF binding site mE1_TFBS_chinmo
3L	2625668	3L_2625668_DEL [dm3] 3L_2625668_DEL [dm6]	AA	T	2.894e^-4	0.853	INTRON Pxn
2L	2649031	2L_2649031_SNP [dm3] 2L_2649031_SNP [dm6]	T	G	2.895e^-4	0.853	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
3R	10378825	3R_10378825_SNP [dm3] 3R_14553103_SNP [dm6]	C	T	2.904e^-4	0.853	INTRON Pde6
2R	12721363	2R_12721363_SNP [dm3] 2R_16833858_SNP [dm6]	C	A	2.906e^-4	0.853	EXON CR43650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	26865879	3R_26865879_SNP [dm3] 3R_31040157_SNP [dm6]	C	A	2.913e^-4	0.853	SYNONYMOUS_CODING CanA1	TF binding site mE1_TFBS_sbb
3L	13163092	3L_13163092_SNP [dm3] 3L_13169992_SNP [dm6]	T	C	2.917e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	6192758	2R_6192758_SNP [dm3] 2R_10305253_SNP [dm6]	C	G	2.918e^-4	0.853	INTRON CAP
2L	18570641	2L_18570641_SNP [dm3] 2L_18570641_SNP [dm6]	A	T	2.920e^-4	0.853	INTRON Pde11
2L	17662121	2L_17662121_SNP [dm3] 2L_17662121_SNP [dm6]	A	G	2.921e^-4	0.853	SYNONYMOUS_CODING CadN
2R	10328270	2R_10328270_SNP [dm3] 2R_14440765_SNP [dm6]	C	A	2.927e^-4	0.854	INTRON Oaz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6468061	2L_6468061_SNP [dm3] 2L_6468061_SNP [dm6]	T	G	2.936e^-4	0.855	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2L	3418238	2L_3418238_SNP [dm3] 2L_3418238_SNP [dm6]	T	A	2.948e^-4	0.856	DOWNSTREAM CG31952 INTRON pgant2
3R	26980216	3R_26980216_SNP [dm3] 3R_31154494_SNP [dm6]	C	A	2.949e^-4	0.856	INTRON Gycbeta100B
2L	6468077	2L_6468077_INS [dm3] 2L_6468077_INS [dm6]	T	TCTGA	2.960e^-4	0.857	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
3R	3106589	3R_3106589_SNP [dm3] 3R_7280867_SNP [dm6]	T	C	2.968e^-4	0.857	INTRON rn
3L	504741	3L_504741_SNP [dm3] 3L_504741_SNP [dm6]	C	A	2.972e^-4	0.857	INTRON klar
2R	14237451	2R_14237451_SNP [dm3] 2R_18349946_SNP [dm6]	C	T	2.978e^-4	0.857	INTRON sbb
3R	19008983	3R_19008983_SNP [dm3] 3R_23183261_SNP [dm6]	A	C	3.001e^-4	0.857	INTRON Irk1	TF binding site mE1_TFBS_chinmo
2L	9824701	2L_9824701_SNP [dm3] 2L_9824701_SNP [dm6]	A	G	3.004e^-4	0.857	INTRON nAChRalpha6
2L	7625890	2L_7625890_SNP [dm3] 2L_7625890_SNP [dm6]	G	A	3.009e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2874722	3L_2874722_SNP [dm3] 3L_2874722_SNP [dm6]	A	G	3.009e^-4	0.857	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	10334763	3R_10334763_SNP [dm3] 3R_14509041_SNP [dm6]	G	T	3.014e^-4	0.857	DOWNSTREAM HtrA2 & 1 other INTERGENIC
2L	7585487	2L_7585487_SNP [dm3] 2L_7585487_SNP [dm6]	A	T	3.018e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17333249	2L_17333249_SNP [dm3] 2L_17333249_SNP [dm6]	G	A	3.022e^-4	0.857	INTERGENIC
2L	1658762	2L_1658762_INS [dm3] 2L_1658762_INS [dm6]	C	CCTGC	3.023e^-4	0.857	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7173172	3L_7173172_SNP [dm3] 3L_7180072_SNP [dm6]	T	G	3.032e^-4	0.857	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15141835	2R_15141835_SNP [dm3] 2R_19254330_SNP [dm6]	T	C	3.036e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27146759	3R_27146759_SNP [dm3] 3R_31321037_SNP [dm6]	C	T	3.037e^-4	0.857	INTRON CG34347
3L	4169779	3L_4169779_SNP [dm3] 3L_4169779_SNP [dm6]	T	G	3.051e^-4	0.857	UPSTREAM CR44529 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	17730863	2L_17730863_SNP [dm3] 2L_17730863_SNP [dm6]	C	G	3.051e^-4	0.857	INTRON CadN
3L	17262064	3L_17262064_SNP [dm3] 3L_17268964_SNP [dm6]	T	C	3.051e^-4	0.857	INTERGENIC
3R	24265774	3R_24265774_SNP [dm3] 3R_28440052_SNP [dm6]	A	T	3.055e^-4	0.857	INTRON beat-VI
3R	24085223	3R_24085223_SNP [dm3] 3R_28259501_SNP [dm6]	T	C	3.057e^-4	0.857	INTERGENIC
2L	7585066	2L_7585066_SNP [dm3] 2L_7585066_SNP [dm6]	G	A	3.066e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7836299	3R_7836299_SNP [dm3] 3R_12010577_SNP [dm6]	A	C	3.068e^-4	0.857	UPSTREAM GCC185 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9897146	3R_9897146_SNP [dm3] 3R_14071424_SNP [dm6]	C	G	3.068e^-4	0.857	INTRON foxo
3R	16268530	3R_16268530_SNP [dm3] 3R_20442808_SNP [dm6]	G	A	3.075e^-4	0.857	INTRON Gfrl
2R	3287251	2R_3287251_SNP [dm3] 2R_7399746_SNP [dm6]	C	T	3.085e^-4	0.857	SYNONYMOUS_CODING Eaf UPSTREAM CG11112
3L	4742362	3L_4742362_SNP [dm3] 3L_4742362_SNP [dm6]	A	G	3.102e^-4	0.857	INTRON RhoGEF64C
3L	514568	3L_514568_SNP [dm3] 3L_514568_SNP [dm6]	T	C	3.104e^-4	0.857	INTRON klar
2L	8317402	2L_8317402_SNP [dm3] 2L_8317402_SNP [dm6]	A	G	3.107e^-4	0.857	DOWNSTREAM CG7806 INTRON mtsh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2585681	X_2585681_SNP [dm3] X_2691648_SNP [dm6]	G	T	3.112e^-4	0.857	INTRON per	TF binding site mE1_TFBS_chinmo
X	5010461	X_5010461_SNP [dm3] X_5116428_SNP [dm6]	G	C	3.116e^-4	0.857	INTRON rg & 1 other
2L	2416920	2L_2416920_SNP [dm3] 2L_2416920_SNP [dm6]	G	A	3.122e^-4	0.857	SYNONYMOUS_CODING CG34448 UPSTREAM CG31948
2R	20519006	2R_20519006_SNP [dm3] 2R_24631483_SNP [dm6]	G	A	3.125e^-4	0.857	NON_SYNONYMOUS_CODING Cyp9c1 INTRON CG13594 EXON CR43787
2R	11281183	2R_11281183_SNP [dm3] 2R_15393678_SNP [dm6]	C	T	3.131e^-4	0.857	INTERGENIC
X	6826851	X_6826851_SNP [dm3] X_6932818_SNP [dm6]	C	A	3.134e^-4	0.857	INTRON CG14431
X	15455940	X_15455940_SNP [dm3] X_15561907_SNP [dm6]	C	T	3.136e^-4	0.857	INTERGENIC
2L	12369577	2L_12369577_SNP [dm3] 2L_12369577_SNP [dm6]	C	T	3.137e^-4	0.857	UPSTREAM bru-2 INTRON bru-2
3L	16363371	3L_16363371_SNP [dm3] 3L_16370271_SNP [dm6]	T	A	3.142e^-4	0.857	DOWNSTREAM CG4842 & 1 other INTRON CG18814
X	17174230	X_17174230_SNP [dm3] X_17280197_SNP [dm6]	G	T	3.143e^-4	0.857	NON_SYNONYMOUS_CODING f DOWNSTREAM CG8664
3R	9578828	3R_9578828_SNP [dm3] 3R_13753106_SNP [dm6]	A	G	3.158e^-4	0.857	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15102086	3R_15102086_SNP [dm3] 3R_19276364_SNP [dm6]	G	T	3.162e^-4	0.857	INTERGENIC
2L	6515224	2L_6515224_SNP [dm3] 2L_6515224_SNP [dm6]	G	T	3.166e^-4	0.857	INTRON CG31637
3L	838800	3L_838800_SNP [dm3] 3L_838800_SNP [dm6]	A	C	3.172e^-4	0.857	UPSTREAM CG13901 INTRON CG13887	TF binding site mE1_TFBS_inv
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	3.186e^-4	0.857	INTRON CG17839
3R	7814201	3R_7814201_SNP [dm3] 3R_11988479_SNP [dm6]	T	G	3.194e^-4	0.857	INTRON mfas
3L	13115473	3L_13115473_SNP [dm3] 3L_13122373_SNP [dm6]	C	A	3.207e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8013117	2L_8013117_SNP [dm3] 2L_8013117_SNP [dm6]	G	T	3.207e^-4	0.857	INTRON Tg
X	20151616	X_20151616_DEL [dm3] X_20280589_DEL [dm6]	GG	G	3.211e^-4	0.857	INTERGENIC
2L	6809220	2L_6809220_SNP [dm3] 2L_6809220_SNP [dm6]	A	C	3.213e^-4	0.857	INTERGENIC
2L	3223506	2L_3223506_DEL [dm3] 2L_3223506_DEL [dm6]	GCTG	G	3.214e^-4	0.857	INTERGENIC
2L	10706467	2L_10706467_SNP [dm3] 2L_10706467_SNP [dm6]	A	G	3.218e^-4	0.857	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2L	7831430	2L_7831430_SNP [dm3] 2L_7831430_SNP [dm6]	C	T	3.233e^-4	0.857	INTRON mts
X	16987709	X_16987709_SNP [dm3] X_17093676_SNP [dm6]	G	A	3.234e^-4	0.857	INTRON CG16700 & 1 other
3R	9834805	3R_9834805_SNP [dm3] 3R_14009083_SNP [dm6]	A	T	3.241e^-4	0.857	INTRON rdx	TF binding site mE1_TFBS_HSA
2L	7579457	2L_7579457_SNP [dm3] 2L_7579457_SNP [dm6]	C	T	3.256e^-4	0.857	UPSTREAM RapGAP1 INTERGENIC
3R	9578789	3R_9578789_SNP [dm3] 3R_13753067_SNP [dm6]	T	C	3.258e^-4	0.857	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4748323	3L_4748323_SNP [dm3] 3L_4748323_SNP [dm6]	A	G	3.260e^-4	0.857	INTRON RhoGEF64C
3R	11121582	3R_11121582_SNP [dm3] 3R_15295860_SNP [dm6]	G	A	3.266e^-4	0.857	DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_twi
3L	4747866	3L_4747866_SNP [dm3] 3L_4747866_SNP [dm6]	C	A	3.276e^-4	0.857	INTRON RhoGEF64C
3L	5300636	3L_5300636_SNP [dm3] 3L_5307536_SNP [dm6]	C	T	3.277e^-4	0.857	INTERGENIC
3R	25805872	3R_25805872_SNP [dm3] 3R_29980150_SNP [dm6]	T	C	3.278e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25800287	3R_25800287_SNP [dm3] 3R_29974565_SNP [dm6]	T	C	3.281e^-4	0.857	INTERGENIC
2L	2729064	2L_2729064_SNP [dm3] 2L_2729064_SNP [dm6]	C	T	3.287e^-4	0.857	INTRON CG31689
2L	14697714	2L_14697714_INS [dm3] 2L_14697714_INS [dm6]	A	AGTC	3.293e^-4	0.857	INTERGENIC
2R	20384131	2R_20384131_SNP [dm3] 2R_24496608_SNP [dm6]	T	G	3.296e^-4	0.857	NON_SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo
2L	7771499	2L_7771499_SNP [dm3] 2L_7771499_SNP [dm6]	T	G	3.301e^-4	0.857	SYNONYMOUS_CODING CG7191
2L	12198844	2L_12198844_SNP [dm3] 2L_12198844_SNP [dm6]	C	T	3.307e^-4	0.857	INTRON aret
2R	14127215	2R_14127215_SNP [dm3] 2R_18239710_SNP [dm6]	A	C	3.307e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11266836	2R_11266836_INS [dm3] 2R_15379331_INS [dm6]	A	AT	3.316e^-4	0.857	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11574657	3L_11574657_SNP [dm3] 3L_11581557_SNP [dm6]	T	A	3.319e^-4	0.857	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2R	3749013	2R_3749013_SNP [dm3] 2R_7861508_SNP [dm6]	A	C	3.337e^-4	0.857	INTRON Dgk
2L	7831466	2L_7831466_SNP [dm3] 2L_7831466_SNP [dm6]	A	C	3.354e^-4	0.857	SPLICE_SITE_REGION mts INTRON mts
3R	10897747	3R_10897747_SNP [dm3] 3R_15072025_SNP [dm6]	T	C	3.355e^-4	0.857	UTR_5_PRIME dpr9	TF binding site mE1_TFBS_cad
3R	10367054	3R_10367054_SNP [dm3] 3R_14541332_SNP [dm6]	G	A	3.357e^-4	0.857	INTRON Pde6
3R	9946325	3R_9946325_SNP [dm3] 3R_14120603_SNP [dm6]	C	A	3.375e^-4	0.857	SPLICE_SITE_REGION Abi INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18744179	2L_18744179_SNP [dm3] 2L_18744179_SNP [dm6]	C	A	3.375e^-4	0.857	INTERGENIC
2R	18712245	2R_18712245_SNP [dm3] 2R_22824722_SNP [dm6]	G	A	3.376e^-4	0.857	SYNONYMOUS_CODING CG42284 UPSTREAM CG30274 & 1 other
3L	2560087	3L_2560087_SNP [dm3] 3L_2560087_SNP [dm6]	G	T	3.378e^-4	0.857	INTRON msn
3R	19410714	3R_19410714_SNP [dm3] 3R_23584992_SNP [dm6]	T	G	3.383e^-4	0.857	INTERGENIC
2R	11273079	2R_11273079_SNP [dm3] 2R_15385574_SNP [dm6]	A	G	3.383e^-4	0.857	SYNONYMOUS_CODING SRPK UTR_3_PRIME SRPK	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	8779406	2R_8779406_SNP [dm3] 2R_12891901_SNP [dm6]	T	C	3.398e^-4	0.857	SYNONYMOUS_CODING vg	TF binding site mE1_TFBS_cad mE1_TFBS_h
3L	4170127	3L_4170127_SNP [dm3] 3L_4170127_SNP [dm6]	T	C	3.403e^-4	0.857	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7046158	2L_7046158_SNP [dm3] 2L_7046158_SNP [dm6]	T	G	3.423e^-4	0.857	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11900597	3L_11900597_SNP [dm3] 3L_11907497_SNP [dm6]	A	G	3.427e^-4	0.857	INTRON CG44837
X	12733788	X_12733788_SNP [dm3] X_12839755_SNP [dm6]	A	G	3.428e^-4	0.857	INTRON Pde9
3R	20960378	3R_20960378_SNP [dm3] 3R_25134656_SNP [dm6]	C	G	3.429e^-4	0.857	INTRON Bili
3R	20960383	3R_20960383_SNP [dm3] 3R_25134661_SNP [dm6]	T	A	3.429e^-4	0.857	INTRON Bili
3R	26597000	3R_26597000_SNP [dm3] 3R_30771278_SNP [dm6]	T	A	3.430e^-4	0.857	INTRON zfh1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7589338	2L_7589338_SNP [dm3] 2L_7589338_SNP [dm6]	C	G	3.430e^-4	0.857	INTERGENIC
2R	19312518	2R_19312518_SNP [dm3] 2R_23424995_SNP [dm6]	C	G	3.433e^-4	0.857	INTRON CG9815
3L	8790984	3L_8790984_SNP [dm3] 3L_8797884_SNP [dm6]	T	C	3.435e^-4	0.857	DOWNSTREAM CG13310 INTRON Fhos
3L	14816369	3L_14816369_DEL [dm3] 3L_14823269_DEL [dm6]	GAACCTC	G	3.436e^-4	0.857	INTRON CG17839
3R	4801266	3R_4801266_SNP [dm3] 3R_8975544_SNP [dm6]	G	C	3.439e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	12733685	X_12733685_SNP [dm3] X_12839652_SNP [dm6]	A	T	3.442e^-4	0.857	INTRON Pde9
3L	21051574	3L_21051574_SNP [dm3] 3L_21058474_SNP [dm6]	T	G	3.448e^-4	0.857	UPSTREAM siz INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7612751	3L_7612751_SNP [dm3] 3L_7619651_SNP [dm6]	A	G	3.456e^-4	0.857	INTRON CG33275
3L	10726766	3L_10726766_SNP [dm3] 3L_10733666_SNP [dm6]	T	C	3.460e^-4	0.857	INTERGENIC
3R	10349656	3R_10349656_DEL [dm3] 3R_14523934_DEL [dm6]	AATGCTTTTAGGCAA...	A	3.465e^-4	0.857	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	19008894	3R_19008894_SNP [dm3] 3R_23183172_SNP [dm6]	C	T	3.468e^-4	0.857	INTRON Irk1
2R	14140126	2R_14140126_SNP [dm3] 2R_18252621_SNP [dm6]	A	G	3.469e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1837117	2L_1837117_SNP [dm3] 2L_1837117_SNP [dm6]	A	G	3.474e^-4	0.857	INTRON wry
2L	2420664	2L_2420664_INS [dm3] 2L_2420664_INS [dm6]	C	CAA	3.480e^-4	0.857	UPSTREAM CG34447 & 1 other INTERGENIC
2L	2420670	2L_2420670_SNP [dm3] 2L_2420670_SNP [dm6]	A	C	3.480e^-4	0.857	UPSTREAM CG34447 & 1 other INTERGENIC
3R	16065681	3R_16065681_SNP [dm3] 3R_20239959_SNP [dm6]	T	A	3.483e^-4	0.857	INTRON Nlg4
2L	7831418	2L_7831418_SNP [dm3] 2L_7831418_SNP [dm6]	A	T	3.484e^-4	0.857	INTRON mts
2R	6808884	2R_6808884_SNP [dm3] 2R_10921379_SNP [dm6]	C	T	3.486e^-4	0.857	INTERGENIC
3R	10378826	3R_10378826_SNP [dm3] 3R_14553104_SNP [dm6]	C	A	3.487e^-4	0.857	INTRON Pde6
2L	883335	2L_883335_SNP [dm3] 2L_883335_SNP [dm6]	A	G	3.489e^-4	0.857	INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2420668	2L_2420668_SNP [dm3] 2L_2420668_SNP [dm6]	T	A	3.489e^-4	0.857	UPSTREAM CG34447 & 1 other INTERGENIC
2L	3878433	2L_3878433_SNP [dm3] 2L_3878433_SNP [dm6]	T	A	3.503e^-4	0.857	INTRON capu
2L	12840609	2L_12840609_SNP [dm3] 2L_12840609_SNP [dm6]	C	T	3.503e^-4	0.857	UPSTREAM CR44970 & 1 other INTERGENIC
2L	17624684	2L_17624684_SNP [dm3] 2L_17624684_SNP [dm6]	T	A	3.504e^-4	0.857	DOWNSTREAM CR44413 INTERGENIC
2L	4324376	2L_4324376_SNP [dm3] 2L_4324376_SNP [dm6]	C	A	3.507e^-4	0.857	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13970456	3R_13970456_SNP [dm3] 3R_18144734_SNP [dm6]	G	A	3.510e^-4	0.857	INTERGENIC
3L	539110	3L_539110_SNP [dm3] 3L_539110_SNP [dm6]	G	A	3.513e^-4	0.857	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	7188181	3L_7188181_SNP [dm3] 3L_7195081_SNP [dm6]	G	A	3.521e^-4	0.857	INTERGENIC
2L	6693849	2L_6693849_SNP [dm3] 2L_6693849_SNP [dm6]	C	T	3.528e^-4	0.857	INTRON Tsp
3L	16166981	3L_16166981_SNP [dm3] 3L_16173881_SNP [dm6]	T	A	3.531e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8327539	2L_8327539_SNP [dm3] 2L_8327539_SNP [dm6]	C	T	3.531e^-4	0.857	UTR_5_PRIME CG14275
3L	4067190	3L_4067190_SNP [dm3] 3L_4067190_SNP [dm6]	C	A	3.532e^-4	0.857	INTRON wit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15935355	2L_15935355_SNP [dm3] 2L_15935355_SNP [dm6]	T	A	3.534e^-4	0.857	INTRON beat-Ib
3L	16926249	3L_16926249_SNP [dm3] 3L_16933149_SNP [dm6]	C	T	3.540e^-4	0.857	INTRON CG11905	TF binding site mE1_TFBS_chinmo
2L	10130111	2L_10130111_SNP [dm3] 2L_10130111_SNP [dm6]	A	G	3.541e^-4	0.857	INTRON CG44153
2L	16336271	2L_16336271_SNP [dm3] 2L_16336271_SNP [dm6]	G	T	3.543e^-4	0.857	INTRON CG31817
2R	7146121	2R_7146121_SNP [dm3] 2R_11258616_SNP [dm6]	T	C	3.544e^-4	0.857	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Ec
2R	7146124	2R_7146124_SNP [dm3] 2R_11258619_SNP [dm6]	C	T	3.544e^-4	0.857	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Ec
2L	17330390	2L_17330390_DEL [dm3] 2L_17330390_DEL [dm6]	TGT	T	3.545e^-4	0.857	INTERGENIC
3L	9305252	3L_9305252_INS [dm3] 3L_9312152_INS [dm6]	A	ACACC	3.557e^-4	0.857	INTERGENIC
2L	3800061	2L_3800061_SNP [dm3] 2L_3800061_SNP [dm6]	T	G	3.560e^-4	0.857	INTRON CG3921
3L	11420666	3L_11420666_SNP [dm3] 3L_11427566_SNP [dm6]	A	G	3.581e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	22125205	3R_22125205_SNP [dm3] 3R_26299483_SNP [dm6]	G	A	3.582e^-4	0.857	INTERGENIC
2L	10130188	2L_10130188_SNP [dm3] 2L_10130188_SNP [dm6]	A	C	3.588e^-4	0.857	INTRON CG44153
X	6833848	X_6833848_SNP [dm3] X_6939815_SNP [dm6]	T	G	3.595e^-4	0.857	INTRON CG14431
2L	13234233	2L_13234233_SNP [dm3] 2L_13234233_SNP [dm6]	T	G	3.599e^-4	0.857	SYNONYMOUS_CODING CG15479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15479837	2R_15479837_SNP [dm3] 2R_19592332_SNP [dm6]	T	C	3.600e^-4	0.857	INTRON sm
3R	19773901	3R_19773901_SNP [dm3] 3R_23948179_SNP [dm6]	C	A	3.602e^-4	0.857	INTRON CG12268
X	3260245	X_3260245_DEL [dm3] X_3366212_DEL [dm6]	GG	G	3.606e^-4	0.857	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	1430926	3L_1430926_SNP [dm3] 3L_1430926_SNP [dm6]	C	T	3.610e^-4	0.857	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3260241	X_3260241_SNP [dm3] X_3366208_SNP [dm6]	A	G	3.617e^-4	0.857	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	20383872	2L_20383872_SNP [dm3] 2L_20383872_SNP [dm6]	C	A	3.619e^-4	0.857	INTERGENIC
2R	5005210	2R_5005210_SNP [dm3] 2R_9117705_SNP [dm6]	T	C	3.622e^-4	0.857	SYNONYMOUS_CODING Su_var_2-10	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	18744183	2L_18744183_SNP [dm3] 2L_18744183_SNP [dm6]	T	C	3.625e^-4	0.857	INTERGENIC
2R	11249338	2R_11249338_SNP [dm3] 2R_15361833_SNP [dm6]	G	T	3.629e^-4	0.857	INTRON unc-5	TF binding site mE1_TFBS_chinmo
2R	4315948	2R_4315948_SNP [dm3] 2R_8428443_SNP [dm6]	T	G	3.633e^-4	0.857	UTR_3_PRIME CSN7
3L	539263	3L_539263_SNP [dm3] 3L_539263_SNP [dm6]	C	G	3.634e^-4	0.857	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	16336272	2L_16336272_SNP [dm3] 2L_16336272_SNP [dm6]	A	C	3.637e^-4	0.857	INTRON CG31817
2L	17137883	2L_17137883_SNP [dm3] 2L_17137883_SNP [dm6]	T	G	3.638e^-4	0.857	INTRON beat-IIIa & 1 other
3R	24806840	3R_24806840_SNP [dm3] 3R_28981118_SNP [dm6]	A	C	3.649e^-4	0.857	INTERGENIC
3R	10345806	3R_10345806_SNP [dm3] 3R_14520084_SNP [dm6]	A	G	3.657e^-4	0.857	UPSTREAM Cyp313a1 INTRON Pde6
2R	11504972	2R_11504972_SNP [dm3] 2R_15617467_SNP [dm6]	C	T	3.661e^-4	0.857	INTRON CG42524
3L	2426537	3L_2426537_SNP [dm3] 3L_2426537_SNP [dm6]	G	C	3.662e^-4	0.857	INTRON CG45186	TF binding site mE1_TFBS_bab1
X	18802527	X_18802527_SNP [dm3] X_18908494_SNP [dm6]	A	G	3.663e^-4	0.857	INTRON CG7378
2L	7824041	2L_7824041_SNP [dm3] 2L_7824041_SNP [dm6]	C	T	3.666e^-4	0.857	INTRON CG7115	TF binding site mE1_TFBS_sens
2L	7943538	2L_7943538_SNP [dm3] 2L_7943538_SNP [dm6]	C	A	3.670e^-4	0.857	INTRON Snoo
2L	17342474	2L_17342474_SNP [dm3] 2L_17342474_SNP [dm6]	T	A	3.670e^-4	0.857	INTERGENIC
2L	10916985	2L_10916985_SNP [dm3] 2L_10916985_SNP [dm6]	G	C	3.670e^-4	0.857	DOWNSTREAM dpr2 INTERGENIC
3L	9908754	3L_9908754_SNP [dm3] 3L_9915654_SNP [dm6]	C	G	3.673e^-4	0.857	INTRON CG34356	TF binding site mE1_TFBS_inv
3R	21460773	3R_21460773_SNP [dm3] 3R_25635051_SNP [dm6]	T	A	3.679e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13516462	2R_13516462_SNP [dm3] 2R_17628957_SNP [dm6]	G	A	3.685e^-4	0.857	INTRON CG10936 & 1 other
2L	7822326	2L_7822326_SNP [dm3] 2L_7822326_SNP [dm6]	G	A	3.690e^-4	0.857	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl
3R	18631362	3R_18631362_SNP [dm3] 3R_22805640_SNP [dm6]	A	G	3.691e^-4	0.857	SYNONYMOUS_CODING CG7031	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19026818	2R_19026818_SNP [dm3] 2R_23139295_SNP [dm6]	A	G	3.695e^-4	0.857	SYNONYMOUS_CODING CG13544 DOWNSTREAM CG30192
2L	8741380	2L_8741380_SNP [dm3] 2L_8741380_SNP [dm6]	T	C	3.696e^-4	0.857	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn
3R	22106540	3R_22106540_SNP [dm3] 3R_26280818_SNP [dm6]	T	G	3.697e^-4	0.857	INTERGENIC
X	17682348	X_17682348_SNP [dm3] X_17788315_SNP [dm6]	T	C	3.701e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10345968	3R_10345968_SNP [dm3] 3R_14520246_SNP [dm6]	G	C	3.727e^-4	0.859	UPSTREAM Cyp313a1 INTRON Pde6
2R	16808410	2R_16808410_SNP [dm3] 2R_20920905_SNP [dm6]	G	A	3.729e^-4	0.859	INTRON Rx	TF binding site mE1_TFBS_cnc
3R	15263134	3R_15263134_SNP [dm3] 3R_19437412_SNP [dm6]	A	G	3.740e^-4	0.859	INTRON CG31221
2L	2418757	2L_2418757_SNP [dm3] 2L_2418757_SNP [dm6]	C	T	3.742e^-4	0.859	SYNONYMOUS_CODING CG34447 UPSTREAM CG34448
3R	25000761	3R_25000761_SNP [dm3] 3R_29175039_SNP [dm6]	G	A	3.745e^-4	0.859	UTR_3_PRIME CG14509 INTRON CG14509
X	11116735	X_11116735_SNP [dm3] X_11222702_SNP [dm6]	A	T	3.747e^-4	0.859	UTR_3_PRIME CG44422 INTRON CG44422
3L	7177159	3L_7177159_SNP [dm3] 3L_7184059_SNP [dm6]	A	G	3.748e^-4	0.859	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7606674	2L_7606674_SNP [dm3] 2L_7606674_SNP [dm6]	G	A	3.755e^-4	0.859	NON_SYNONYMOUS_CODING Cyp4d21
3L	13592909	3L_13592909_SNP [dm3] 3L_13599809_SNP [dm6]	G	A	3.758e^-4	0.859	INTRON bru-3 EXON CR45120
2L	8320613	2L_8320613_SNP [dm3] 2L_8320613_SNP [dm6]	A	G	3.767e^-4	0.859	SYNONYMOUS_CODING CG7787 UPSTREAM mtsh DOWNSTREAM CG7781	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	10272494	3R_10272494_SNP [dm3] 3R_14446772_SNP [dm6]	G	A	3.776e^-4	0.859	INTRON cv-c	TF binding site BDTNP1_TFBS_da
2L	7147769	2L_7147769_SNP [dm3] 2L_7147769_SNP [dm6]	G	T	3.777e^-4	0.859	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	15474939	3L_15474939_SNP [dm3] 3L_15481839_SNP [dm6]	T	C	3.779e^-4	0.859	INTERGENIC
3L	7921512	3L_7921512_INS [dm3] 3L_7928412_INS [dm6]	T	TCAAGT	3.781e^-4	0.859	INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20513747	3R_20513747_SNP [dm3] 3R_24688025_SNP [dm6]	C	A	3.796e^-4	0.859	INTRON slo
3L	5389379	3L_5389379_SNP [dm3] 3L_5396279_SNP [dm6]	T	A	3.798e^-4	0.859	INTERGENIC
3R	9590497	3R_9590497_SNP [dm3] 3R_13764775_SNP [dm6]	G	C	3.802e^-4	0.859	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
2L	8322025	2L_8322025_SNP [dm3] 2L_8322025_SNP [dm6]	A	T	3.809e^-4	0.859	UTR_3_PRIME CG7781 DOWNSTREAM CG7787
3R	19106094	3R_19106094_SNP [dm3] 3R_23280372_SNP [dm6]	G	A	3.810e^-4	0.859	UPSTREAM Cdc16 INTRON orb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	8328397	2L_8328397_SNP [dm3] 2L_8328397_SNP [dm6]	A	T	3.810e^-4	0.859	UPSTREAM CG14275 INTRON CG14275
X	19584585	X_19584585_SNP [dm3] X_19690552_SNP [dm6]	G	A	3.825e^-4	0.859	UTR_3_PRIME Mer DOWNSTREAM Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	12298939	X_12298939_SNP [dm3] X_12404906_SNP [dm6]	A	C	3.831e^-4	0.859	UTR_3_PRIME CG32651
2R	6192903	2R_6192903_SNP [dm3] 2R_10305398_SNP [dm6]	G	A	3.835e^-4	0.859	INTRON CAP
3L	506534	3L_506534_SNP [dm3] 3L_506534_SNP [dm6]	T	A	3.848e^-4	0.859	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3L	506535	3L_506535_SNP [dm3] 3L_506535_SNP [dm6]	T	A	3.848e^-4	0.859	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	3475220	2L_3475220_SNP [dm3] 2L_3475220_SNP [dm6]	A	C	3.850e^-4	0.859	UTR_3_PRIME pgant4 UPSTREAM CR45372
3R	16890068	3R_16890068_SNP [dm3] 3R_21064346_SNP [dm6]	A	T	3.853e^-4	0.859	UTR_5_PRIME Cortactin UPSTREAM AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16165715	3L_16165715_SNP [dm3] 3L_16172615_SNP [dm6]	G	T	3.853e^-4	0.859	INTERGENIC
2L	1748131	2L_1748131_INS [dm3] 2L_1748131_INS [dm6]	T	AAATATCATTCA...	3.858e^-4	0.859	INTRON CG17646
2L	17137838	2L_17137838_SNP [dm3] 2L_17137838_SNP [dm6]	T	C	3.858e^-4	0.859	INTRON beat-IIIa & 1 other
3L	83316	3L_83316_SNP [dm3] 3L_83316_SNP [dm6]	C	A	3.862e^-4	0.859	INTERGENIC
3R	15328854	3R_15328854_SNP [dm3] 3R_19503132_SNP [dm6]	T	A	3.862e^-4	0.859	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
X	19754242	X_19754242_SNP [dm3] X_19860209_SNP [dm6]	C	T	3.864e^-4	0.859	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618 DOWNSTREAM Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7584095	2L_7584095_SNP [dm3] 2L_7584095_SNP [dm6]	C	T	3.864e^-4	0.859	DOWNSTREAM Spn28B INTERGENIC
2R	9909355	2R_9909355_SNP [dm3] 2R_14021850_SNP [dm6]	G	A	3.870e^-4	0.859	INTRON mam
2L	3600915	2L_3600915_SNP [dm3] 2L_3600915_SNP [dm6]	G	T	3.880e^-4	0.859	INTERGENIC
3L	16353389	3L_16353389_SNP [dm3] 3L_16360289_SNP [dm6]	C	A	3.881e^-4	0.859	UPSTREAM CG45057 INTRON CG45057	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21376954	3R_21376954_DEL [dm3] 3R_25551232_DEL [dm6]	CGAAA	T	3.888e^-4	0.86	INTRON msi
2R	19026758	2R_19026758_SNP [dm3] 2R_23139235_SNP [dm6]	T	C	3.891e^-4	0.86	SYNONYMOUS_CODING CG13544 DOWNSTREAM CG30192
3L	13593450	3L_13593450_SNP [dm3] 3L_13600350_SNP [dm6]	G	A	3.903e^-4	0.86	DOWNSTREAM CR45120 INTRON bru-3
3R	12412684	3R_12412684_SNP [dm3] 3R_16586962_SNP [dm6]	C	G	3.904e^-4	0.86	INTERGENIC
3L	2180856	3L_2180856_SNP [dm3] 3L_2180856_SNP [dm6]	G	A	3.907e^-4	0.86	INTERGENIC
2R	6852202	2R_6852202_SNP [dm3] 2R_10964697_SNP [dm6]	A	G	3.923e^-4	0.86	INTERGENIC
2L	17137879	2L_17137879_SNP [dm3] 2L_17137879_SNP [dm6]	T	A	3.923e^-4	0.86	INTRON beat-IIIa & 1 other
3L	13593516	3L_13593516_SNP [dm3] 3L_13600416_SNP [dm6]	T	A	3.927e^-4	0.86	DOWNSTREAM CR45120 INTRON bru-3
3L	10824371	3L_10824371_SNP [dm3] 3L_10831271_SNP [dm6]	C	T	3.927e^-4	0.86	INTERGENIC
3R	14440081	3R_14440081_SNP [dm3] 3R_18614359_SNP [dm6]	T	A	3.928e^-4	0.86	INTRON qin & 1 other
3R	24062669	3R_24062669_SNP [dm3] 3R_28236947_SNP [dm6]	G	A	3.940e^-4	0.861	DOWNSTREAM CR45041 INTRON CG34354
2R	6192661	2R_6192661_SNP [dm3] 2R_10305156_SNP [dm6]	C	G	3.948e^-4	0.862	INTRON CAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5018455	3R_5018455_SNP [dm3] 3R_9192733_SNP [dm6]	T	G	3.961e^-4	0.863	INTRON pum
2L	10514561	2L_10514561_SNP [dm3] 2L_10514561_SNP [dm6]	G	A	3.961e^-4	0.863	INTRON Fatp & 1 other
2R	16243663	2R_16243663_SNP [dm3] 2R_20356158_SNP [dm6]	G	C	3.975e^-4	0.865	INTERGENIC
2L	15468386	2L_15468386_SNP [dm3] 2L_15468386_SNP [dm6]	T	C	3.982e^-4	0.865	DOWNSTREAM CR45353 INTERGENIC
2L	14928043	2L_14928043_SNP [dm3] 2L_14928043_SNP [dm6]	A	C	3.988e^-4	0.865	SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	8657607	2L_8657607_SNP [dm3] 2L_8657607_SNP [dm6]	T	A	3.990e^-4	0.865	INTRON Sema-1a
2L	17330190	2L_17330190_SNP [dm3] 2L_17330190_SNP [dm6]	G	T	4.000e^-4	0.865	INTERGENIC
X	18556639	X_18556639_SNP [dm3] X_18662606_SNP [dm6]	C	T	4.004e^-4	0.865	UPSTREAM CG6696 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16987728	X_16987728_SNP [dm3] X_17093695_SNP [dm6]	C	A	4.020e^-4	0.865	INTRON CG16700 & 1 other
X	11951580	X_11951580_SNP [dm3] X_12057547_SNP [dm6]	C	T	4.020e^-4	0.865	UPSTREAM Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14765759	3L_14765759_SNP [dm3] 3L_14772659_SNP [dm6]	G	T	4.023e^-4	0.865	NON_SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10351375	3R_10351375_SNP [dm3] 3R_14525653_SNP [dm6]	T	C	4.038e^-4	0.865	INTRON Pde6
2L	3313426	2L_3313426_SNP [dm3] 2L_3313426_SNP [dm6]	C	T	4.048e^-4	0.865	NON_SYNONYMOUS_CODING CG3277
2R	6249589	2R_6249589_SNP [dm3] 2R_10362084_SNP [dm6]	A	C	4.052e^-4	0.865	UPSTREAM Gr47a INTRON CG42732	TF binding site mE1_TFBS_inv
3R	10331710	3R_10331710_SNP [dm3] 3R_14505988_SNP [dm6]	T	A	4.054e^-4	0.865	INTRON CR44177
3R	10388485	3R_10388485_SNP [dm3] 3R_14562763_SNP [dm6]	C	T	4.056e^-4	0.865	SYNONYMOUS_CODING CG14851	TF binding site mE1_TFBS_cad
2L	12088883	2L_12088883_SNP [dm3] 2L_12088883_SNP [dm6]	A	T	4.064e^-4	0.865	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	6858552	X_6858552_SNP [dm3] X_6964519_SNP [dm6]	G	C	4.064e^-4	0.865	INTRON CG32732 & 1 other
2L	10132745	2L_10132745_SNP [dm3] 2L_10132745_SNP [dm6]	C	T	4.074e^-4	0.865	INTRON CG44153
X	11132398	X_11132398_SNP [dm3] X_11238365_SNP [dm6]	A	G	4.075e^-4	0.865	INTRON CG44422
X	18802584	X_18802584_INS [dm3] X_18908551_INS [dm6]	GA	ATG	4.078e^-4	0.865	INTRON CG7378
3R	10388494	3R_10388494_SNP [dm3] 3R_14562772_SNP [dm6]	A	G	4.083e^-4	0.865	SYNONYMOUS_CODING CG14851	TF binding site mE1_TFBS_cad
3L	2426542	3L_2426542_SNP [dm3] 3L_2426542_SNP [dm6]	C	T	4.085e^-4	0.865	INTRON CG45186	TF binding site mE1_TFBS_bab1
2R	11280659	2R_11280659_SNP [dm3] 2R_15393154_SNP [dm6]	A	G	4.086e^-4	0.865	INTERGENIC
2L	11168142	2L_11168142_SNP [dm3] 2L_11168142_SNP [dm6]	C	T	4.089e^-4	0.865	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7709443	2L_7709443_SNP [dm3] 2L_7709443_SNP [dm6]	C	T	4.090e^-4	0.865	SYNONYMOUS_CODING Tep3 EXON CR44990	TF binding site mE1_TFBS_cad
3R	21178177	3R_21178177_SNP [dm3] 3R_25352455_SNP [dm6]	T	G	4.096e^-4	0.865	DOWNSTREAM Fur1 INTRON Fur1
2R	9556418	2R_9556418_SNP [dm3] 2R_13668913_SNP [dm6]	C	T	4.098e^-4	0.865	SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2880031	2L_2880031_SNP [dm3] 2L_2880031_SNP [dm6]	A	C	4.098e^-4	0.865	DOWNSTREAM NTPase INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	14072641	2L_14072641_SNP [dm3] 2L_14072641_SNP [dm6]	A	T	4.102e^-4	0.865	INTRON nAChRalpha5
2R	5886953	2R_5886953_SNP [dm3] 2R_9999448_SNP [dm6]	G	A	4.108e^-4	0.866	SYNONYMOUS_CODING Pka-R2
3R	2430516	3R_2430516_SNP [dm3] 3R_6604794_SNP [dm6]	C	T	4.122e^-4	0.868	INTERGENIC
2L	17793798	2L_17793798_SNP [dm3] 2L_17793798_SNP [dm6]	G	T	4.131e^-4	0.869	DOWNSTREAM CR43419 INTRON CadN2
2L	6714250	2L_6714250_SNP [dm3] 2L_6714250_SNP [dm6]	C	T	4.139e^-4	0.869	INTRON AkhR
2L	17730349	2L_17730349_SNP [dm3] 2L_17730349_SNP [dm6]	T	A	4.164e^-4	0.874	INTRON CadN
3R	10521015	3R_10521015_SNP [dm3] 3R_14695293_SNP [dm6]	T	C	4.189e^-4	0.877	INTRON Meltrin
2L	7606625	2L_7606625_SNP [dm3] 2L_7606625_SNP [dm6]	C	T	4.192e^-4	0.877	SYNONYMOUS_CODING Cyp4d21
2L	13868705	2L_13868705_SNP [dm3] 2L_13868705_SNP [dm6]	G	A	4.194e^-4	0.877	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18704218	2R_18704218_SNP [dm3] 2R_22816713_SNP [dm6]	A	G	4.201e^-4	0.877	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
2R	15935163	2R_15935163_SNP [dm3] 2R_20047658_SNP [dm6]	A	T	4.217e^-4	0.879	INTERGENIC
2R	7044234	2R_7044234_SNP [dm3] 2R_11156729_SNP [dm6]	G	A	4.219e^-4	0.879	INTRON CG13229
3R	10351412	3R_10351412_SNP [dm3] 3R_14525690_SNP [dm6]	T	A	4.220e^-4	0.879	INTRON Pde6
3R	16648480	3R_16648480_SNP [dm3] 3R_20822758_SNP [dm6]	C	T	4.225e^-4	0.879	UPSTREAM CG17271 & 1 other DOWNSTREAM CG17272 & 1 other INTRON RpS20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc
2L	9846014	2L_9846014_SNP [dm3] 2L_9846014_SNP [dm6]	T	C	4.232e^-4	0.879	INTRON nAChRalpha6
3R	9730378	3R_9730378_DEL [dm3] 3R_13904656_DEL [dm6]	TGTG	C	4.245e^-4	0.881	DOWNSTREAM ems INTERGENIC
2L	7585108	2L_7585108_INS [dm3] 2L_7585108_INS [dm6]	G	GGGG	4.249e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14172657	2L_14172657_SNP [dm3] 2L_14172657_SNP [dm6]	A	G	4.263e^-4	0.883	INTRON CG43333
3L	506397	3L_506397_SNP [dm3] 3L_506397_SNP [dm6]	A	G	4.272e^-4	0.883	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	8452375	2L_8452375_SNP [dm3] 2L_8452375_SNP [dm6]	G	A	4.273e^-4	0.883	UPSTREAM fu12 INTRON fu12
3R	13831854	3R_13831854_SNP [dm3] 3R_18006132_SNP [dm6]	C	A	4.289e^-4	0.884	INTRON cpo
3L	13593386	3L_13593386_SNP [dm3] 3L_13600286_SNP [dm6]	T	C	4.296e^-4	0.884	DOWNSTREAM CR45120 INTRON bru-3
2L	7938557	2L_7938557_SNP [dm3] 2L_7938557_SNP [dm6]	T	A	4.304e^-4	0.884	INTRON Snoo
2R	11276223	2R_11276223_SNP [dm3] 2R_15388718_SNP [dm6]	G	A	4.305e^-4	0.884	DOWNSTREAM SRPK INTERGENIC
X	6826859	X_6826859_SNP [dm3] X_6932826_SNP [dm6]	T	C	4.308e^-4	0.884	INTRON CG14431
X	14230397	X_14230397_DEL [dm3] X_14336364_DEL [dm6]	GGAAGTTCTG	G	4.320e^-4	0.884	INTRON dpr8
2L	11165011	2L_11165011_SNP [dm3] 2L_11165011_SNP [dm6]	A	G	4.324e^-4	0.884	INTRON Ca-beta
X	7308606	X_7308606_SNP [dm3] X_7414573_SNP [dm6]	C	G	4.327e^-4	0.884	UTR_3_PRIME CG42705 DOWNSTREAM CG42705
2L	17741991	2L_17741991_SNP [dm3] 2L_17741991_SNP [dm6]	T	C	4.328e^-4	0.884	INTRON CadN
2L	10626620	2L_10626620_SNP [dm3] 2L_10626620_SNP [dm6]	T	C	4.333e^-4	0.884	INTRON Trim9
3L	1421960	3L_1421960_SNP [dm3] 3L_1421960_SNP [dm6]	C	A	4.335e^-4	0.884	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15936156	2L_15936156_SNP [dm3] 2L_15936156_SNP [dm6]	C	T	4.336e^-4	0.884	INTRON beat-Ib
2R	12132758	2R_12132758_SNP [dm3] 2R_16245253_SNP [dm6]	G	T	4.349e^-4	0.885	INTRON CngA	TF binding site mE1_TFBS_cad
3L	17240314	3L_17240314_SNP [dm3] 3L_17247214_SNP [dm6]	G	C	4.351e^-4	0.885	INTRON CR43870
2L	9824692	2L_9824692_SNP [dm3] 2L_9824692_SNP [dm6]	G	A	4.357e^-4	0.885	INTRON nAChRalpha6
3L	2663930	3L_2663930_SNP [dm3] 3L_2663930_SNP [dm6]	A	G	4.371e^-4	0.886	DOWNSTREAM CG33234 INTRON Fife
3R	1913179	3R_1913179_SNP [dm3] 3R_6087457_SNP [dm6]	A	T	4.372e^-4	0.886	INTERGENIC
2R	5929492	2R_5929492_SNP [dm3] 2R_10041987_SNP [dm6]	C	T	4.396e^-4	0.89	NON_SYNONYMOUS_CODING CG34220 INTRON oys	TF binding site mE1_TFBS_HSA
3R	19566090	3R_19566090_SNP [dm3] 3R_23740368_SNP [dm6]	T	A	4.398e^-4	0.89	INTRON Hmgcr
2L	11462098	2L_11462098_SNP [dm3] 2L_11462098_SNP [dm6]	C	T	4.403e^-4	0.89	INTERGENIC
2R	5895751	2R_5895751_SNP [dm3] 2R_10008246_SNP [dm6]	T	G	4.407e^-4	0.89	INTRON Pka-R2
2L	2416137	2L_2416137_SNP [dm3] 2L_2416137_SNP [dm6]	G	A	4.414e^-4	0.89	NON_SYNONYMOUS_CODING CG31948 UPSTREAM CG18641 DOWNSTREAM CG34448	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10345808	3R_10345808_SNP [dm3] 3R_14520086_SNP [dm6]	C	T	4.416e^-4	0.89	UPSTREAM Cyp313a1 INTRON Pde6
3R	9590603	3R_9590603_SNP [dm3] 3R_13764881_SNP [dm6]	C	T	4.420e^-4	0.89	UPSTREAM CG9312 DOWNSTREAM CG34383 INTERGENIC
2R	15375530	2R_15375530_SNP [dm3] 2R_19488025_SNP [dm6]	T	C	4.439e^-4	0.891	SYNONYMOUS_CODING Oseg6
2L	5899171	2L_5899171_SNP [dm3] 2L_5899171_SNP [dm6]	T	A	4.441e^-4	0.891	DOWNSTREAM CR44579 INTERGENIC
3R	22106523	3R_22106523_SNP [dm3] 3R_26280801_SNP [dm6]	C	G	4.449e^-4	0.891	INTERGENIC
X	1702402	X_1702402_DEL [dm3] X_1808369_DEL [dm6]	TCCTGCT	T	4.449e^-4	0.891	INTRON CG42666	TF binding site mE1_TFBS_chinmo
2L	7606473	2L_7606473_SNP [dm3] 2L_7606473_SNP [dm6]	C	G	4.450e^-4	0.891	INTRON Cyp4d21
X	13670452	X_13670452_SNP [dm3] X_13776419_SNP [dm6]	C	T	4.474e^-4	0.894	DOWNSTREAM rdgB INTRON rdgB
3L	15722497	3L_15722497_SNP [dm3] 3L_15729397_SNP [dm6]	A	G	4.475e^-4	0.894	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22465259	3R_22465259_SNP [dm3] 3R_26639537_SNP [dm6]	C	A	4.482e^-4	0.894	UPSTREAM TwdlD INTERGENIC
3L	10824561	3L_10824561_DEL [dm3] 3L_10831461_DEL [dm6]	CC	C	4.488e^-4	0.894	INTERGENIC
2L	7824108	2L_7824108_SNP [dm3] 2L_7824108_SNP [dm6]	C	T	4.491e^-4	0.894	SYNONYMOUS_CODING CG7115	TF binding site mE1_TFBS_sens
2L	13314326	2L_13314326_SNP [dm3] 2L_13314326_SNP [dm6]	G	A	4.497e^-4	0.894	INTRON CG43778
3L	16165713	3L_16165713_SNP [dm3] 3L_16172613_SNP [dm6]	G	T	4.514e^-4	0.894	INTERGENIC
2L	7053090	2L_7053090_SNP [dm3] 2L_7053090_SNP [dm6]	G	A	4.515e^-4	0.894	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7176662	3L_7176662_SNP [dm3] 3L_7183562_SNP [dm6]	A	G	4.516e^-4	0.894	INTRON Dscam2
2L	7591071	2L_7591071_SNP [dm3] 2L_7591071_SNP [dm6]	C	A	4.517e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
3R	16890496	3R_16890496_DEL [dm3] 3R_21064774_DEL [dm6]	TC	T	4.517e^-4	0.894	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17793797	2L_17793797_SNP [dm3] 2L_17793797_SNP [dm6]	A	G	4.538e^-4	0.897	DOWNSTREAM CR43419 INTRON CadN2
3L	1706599	3L_1706599_SNP [dm3] 3L_1706599_SNP [dm6]	C	T	4.547e^-4	0.897	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15526011	2L_15526011_SNP [dm3] 2L_15526011_SNP [dm6]	A	T	4.556e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad
X	4405322	X_4405322_SNP [dm3] X_4511289_SNP [dm6]	G	A	4.561e^-4	0.897	INTRON CR32773	silencer mE1_HDAC_PRE
2R	11280661	2R_11280661_SNP [dm3] 2R_15393156_SNP [dm6]	A	G	4.563e^-4	0.897	INTERGENIC
2R	7570758	2R_7570758_SNP [dm3] 2R_11683253_SNP [dm6]	C	A	4.569e^-4	0.897	DOWNSTREAM CG13196 INTRON Buffy
X	12902177	X_12902177_SNP [dm3] X_13008144_SNP [dm6]	G	A	4.570e^-4	0.897	INTRON rad
2L	8316475	2L_8316475_SNP [dm3] 2L_8316475_SNP [dm6]	A	C	4.572e^-4	0.897	SYNONYMOUS_CODING CG7806 DOWNSTREAM mtsh
2L	7040975	2L_7040975_SNP [dm3] 2L_7040975_SNP [dm6]	C	T	4.575e^-4	0.897	SYNONYMOUS_CODING milt
2R	6277637	2R_6277637_SNP [dm3] 2R_10390132_SNP [dm6]	C	A	4.598e^-4	0.899	INTRON CG42732
3R	10366862	3R_10366862_SNP [dm3] 3R_14541140_SNP [dm6]	G	A	4.600e^-4	0.899	INTRON Pde6
2L	3566915	2L_3566915_SNP [dm3] 2L_3566915_SNP [dm6]	T	C	4.603e^-4	0.899	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	7588735	2L_7588735_SNP [dm3] 2L_7588735_SNP [dm6]	C	T	4.608e^-4	0.899	INTERGENIC
2L	16609049	2L_16609049_SNP [dm3] 2L_16609049_SNP [dm6]	A	T	4.615e^-4	0.9	SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	16928300	3L_16928300_SNP [dm3] 3L_16935200_SNP [dm6]	A	G	4.624e^-4	0.901	SYNONYMOUS_CODING CG11905	TF binding site mE1_TFBS_Trl
3R	16648421	3R_16648421_SNP [dm3] 3R_20822699_SNP [dm6]	C	A	4.629e^-4	0.901	UPSTREAM CG17271 & 1 other DOWNSTREAM CG17272 INTRON RpS20 EXON snoRNA:Psi18S-1295	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	10133493	2R_10133493_SNP [dm3] 2R_14245988_SNP [dm6]	G	A	4.649e^-4	0.901	NON_SYNONYMOUS_CODING CG8503 UPSTREAM Mdr50
3L	8428031	3L_8428031_SNP [dm3] 3L_8434931_SNP [dm6]	A	T	4.660e^-4	0.901	SYNONYMOUS_CODING Unr
2L	2420633	2L_2420633_SNP [dm3] 2L_2420633_SNP [dm6]	T	A	4.665e^-4	0.901	UPSTREAM CG34447 & 1 other INTERGENIC
3R	22116244	3R_22116244_SNP [dm3] 3R_26290522_SNP [dm6]	A	T	4.669e^-4	0.901	INTERGENIC
2L	7041752	2L_7041752_SNP [dm3] 2L_7041752_SNP [dm6]	G	A	4.675e^-4	0.901	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7041755	2L_7041755_SNP [dm3] 2L_7041755_SNP [dm6]	T	C	4.675e^-4	0.901	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	750471	3L_750471_SNP [dm3] 3L_750471_SNP [dm6]	T	C	4.679e^-4	0.901	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	15000889	3L_15000889_SNP [dm3] 3L_15007789_SNP [dm6]	T	A	4.687e^-4	0.901	INTRON Reck
2L	16967221	2L_16967221_SNP [dm3] 2L_16967221_SNP [dm6]	A	G	4.704e^-4	0.901	INTERGENIC
2L	15525938	2L_15525938_SNP [dm3] 2L_15525938_SNP [dm6]	A	G	4.710e^-4	0.901	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9717365	3R_9717365_SNP [dm3] 3R_13891643_SNP [dm6]	G	T	4.710e^-4	0.901	INTERGENIC
2L	1362262	2L_1362262_SNP [dm3] 2L_1362262_SNP [dm6]	C	A	4.713e^-4	0.901	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1898866	3R_1898866_SNP [dm3] 3R_6073144_SNP [dm6]	C	T	4.720e^-4	0.901	INTERGENIC
2R	9010512	2R_9010512_SNP [dm3] 2R_13123007_SNP [dm6]	A	G	4.722e^-4	0.901	UPSTREAM CG13325 INTRON CG13325
2L	14697736	2L_14697736_SNP [dm3] 2L_14697736_SNP [dm6]	T	A	4.730e^-4	0.901	INTERGENIC
3R	24806836	3R_24806836_SNP [dm3] 3R_28981114_SNP [dm6]	A	G	4.732e^-4	0.901	INTERGENIC
2L	13237780	2L_13237780_SNP [dm3] 2L_13237780_SNP [dm6]	A	T	4.737e^-4	0.901	INTRON CG5867
3L	2468478	3L_2468478_SNP [dm3] 3L_2468478_SNP [dm6]	T	A	4.738e^-4	0.901	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	21783742	3R_21783742_SNP [dm3] 3R_25958020_SNP [dm6]	A	G	4.741e^-4	0.901	INTERGENIC
X	18085322	X_18085322_SNP [dm3] X_18191289_SNP [dm6]	G	A	4.743e^-4	0.901	INTRON Frq2
2L	2420662	2L_2420662_SNP [dm3] 2L_2420662_SNP [dm6]	A	T	4.746e^-4	0.901	UPSTREAM CG34447 & 1 other INTERGENIC
3L	7188620	3L_7188620_SNP [dm3] 3L_7195520_SNP [dm6]	G	A	4.755e^-4	0.901	INTERGENIC
2L	17239938	2L_17239938_SNP [dm3] 2L_17239938_SNP [dm6]	C	A	4.756e^-4	0.901	INTRON beat-IIIc
3R	24361936	3R_24361936_SNP [dm3] 3R_28536214_SNP [dm6]	C	G	4.763e^-4	0.901	INTRON Ppn
2L	18590913	2L_18590913_SNP [dm3] 2L_18590913_SNP [dm6]	C	T	4.768e^-4	0.901	UTR_5_PRIME CG15160 UPSTREAM Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	4.776e^-4	0.901	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6468107	2L_6468107_SNP [dm3] 2L_6468107_SNP [dm6]	G	C	4.781e^-4	0.901	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
3R	7829918	3R_7829918_SNP [dm3] 3R_12004196_SNP [dm6]	C	A	4.784e^-4	0.901	DOWNSTREAM Ect3 INTRON Tk
2R	6825297	2R_6825297_SNP [dm3] 2R_10937792_SNP [dm6]	A	C	4.790e^-4	0.901	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1108341	3L_1108341_SNP [dm3] 3L_1108341_SNP [dm6]	C	T	4.795e^-4	0.901	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	547857	3L_547857_SNP [dm3] 3L_547857_SNP [dm6]	T	C	4.796e^-4	0.901	NON_SYNONYMOUS_CODING hipk	TF binding site BDTNP1_TFBS_dl
3L	5599722	3L_5599722_SNP [dm3] 3L_5606622_SNP [dm6]	G	T	4.805e^-4	0.901	SYNONYMOUS_CODING mthl2 DOWNSTREAM Eaf6
X	3893103	X_3893103_SNP [dm3] X_3999070_SNP [dm6]	A	G	4.808e^-4	0.901	INTERGENIC
2L	883313	2L_883313_SNP [dm3] 2L_883313_SNP [dm6]	C	T	4.808e^-4	0.901	INTRON CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7938763	2L_7938763_SNP [dm3] 2L_7938763_SNP [dm6]	T	C	4.809e^-4	0.901	INTRON Snoo
3R	19800502	3R_19800502_SNP [dm3] 3R_23974780_SNP [dm6]	T	C	4.816e^-4	0.901	SYNONYMOUS_CODING CG31140 DOWNSTREAM CG31140 INTRON CG31140	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Cuticul_6_10_C25_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results