DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.987e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02104

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.7097	0.0078

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2592 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	10074111	3R_10074111_SNP [dm3] 3R_14248389_SNP [dm6]	C	G	1.083e^-6	0.679	INTERGENIC
X	4807838	X_4807838_SNP [dm3] X_4913805_SNP [dm6]	A	T	1.764e^-6	0.679	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15244752	2R_15244752_SNP [dm3] 2R_19357247_SNP [dm6]	C	T	1.798e^-6	0.679	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15689009	3L_15689009_SNP [dm3] 3L_15695909_SNP [dm6]	T	C	2.969e^-6	0.679	INTERGENIC
2R	15244823	2R_15244823_SNP [dm3] 2R_19357318_SNP [dm6]	G	T	3.116e^-6	0.679	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16197534	3L_16197534_SNP [dm3] 3L_16204434_SNP [dm6]	T	A	3.435e^-6	0.679	INTERGENIC
2R	15244813	2R_15244813_DEL [dm3] 2R_19357308_DEL [dm6]	AGAGAGA	A	4.009e^-6	0.679	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16201184	3L_16201184_SNP [dm3] 3L_16208084_SNP [dm6]	T	G	4.959e^-6	0.679	INTERGENIC
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	5.563e^-6	0.679	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22899508	3R_22899508_SNP [dm3] 3R_27073786_SNP [dm6]	G	T	5.591e^-6	0.679	INTERGENIC
3L	10919438	3L_10919438_SNP [dm3] 3L_10926338_SNP [dm6]	G	A	5.610e^-6	0.679	INTERGENIC
2R	16390572	2R_16390572_SNP [dm3] 2R_20503067_SNP [dm6]	A	T	5.827e^-6	0.679	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
X	19601741	X_19601741_SNP [dm3] X_19707708_SNP [dm6]	A	T	6.207e^-6	0.679	INTRON meso18E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7075701	2L_7075701_SNP [dm3] 2L_7075701_SNP [dm6]	G	A	6.889e^-6	0.679	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4876994	3R_4876994_SNP [dm3] 3R_9051272_SNP [dm6]	A	T	7.351e^-6	0.679	NON_SYNONYMOUS_CODING Mst85C UPSTREAM Nmdmc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9368635	3R_9368635_INS [dm3] 3R_13542913_INS [dm6]	C	CC	7.594e^-6	0.679	INTERGENIC
3R	23223189	3R_23223189_SNP [dm3] 3R_27397467_SNP [dm6]	G	A	8.288e^-6	0.679	INTRON side
2R	14507834	2R_14507834_SNP [dm3] 2R_18620329_SNP [dm6]	T	A	8.540e^-6	0.679	DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13175467	3L_13175467_SNP [dm3] 3L_13182367_SNP [dm6]	T	G	9.798e^-6	0.679	INTERGENIC
3L	11649747	3L_11649747_SNP [dm3] 3L_11656647_SNP [dm6]	C	T	1.098e^-5	0.679	UPSTREAM mir-274 INTRON CG32085
2R	16438013	2R_16438013_SNP [dm3] 2R_20550508_SNP [dm6]	A	C	1.130e^-5	0.679	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065 UPSTREAM Cpr57A & 1 other	regulatory region REDfly_CRMs
2L	1481152	2L_1481152_SNP [dm3] 2L_1481152_SNP [dm6]	G	A	1.205e^-5	0.679	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13850342	3L_13850342_SNP [dm3] 3L_13857242_SNP [dm6]	A	G	1.213e^-5	0.679	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6342928	2L_6342928_SNP [dm3] 2L_6342928_SNP [dm6]	G	C	1.220e^-5	0.679	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv mE1_TFBS_sens
2R	14422991	2R_14422991_SNP [dm3] 2R_18535486_SNP [dm6]	C	T	1.238e^-5	0.679	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	16391656	2R_16391656_SNP [dm3] 2R_20504151_SNP [dm6]	T	G	1.428e^-5	0.679	SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b & 1 other	regulatory region REDfly_CRMs
X	14887386	X_14887386_SNP [dm3] X_14993353_SNP [dm6]	G	T	1.459e^-5	0.679	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16784934	2R_16784934_SNP [dm3] 2R_20897429_SNP [dm6]	C	T	1.490e^-5	0.679	UTR_5_PRIME otp INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15637966	3L_15637966_SNP [dm3] 3L_15644866_SNP [dm6]	T	C	1.500e^-5	0.679	INTRON comm3
2R	3578052	2R_3578052_SNP [dm3] 2R_7690547_SNP [dm6]	A	T	1.509e^-5	0.679	INTRON CG1399
3L	12976196	3L_12976196_SNP [dm3] 3L_12983096_SNP [dm6]	G	A	1.535e^-5	0.679	INTERGENIC
2R	17788598	2R_17788598_SNP [dm3] 2R_21901093_SNP [dm6]	G	A	1.583e^-5	0.679	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13850255	3L_13850255_SNP [dm3] 3L_13857155_SNP [dm6]	C	T	1.595e^-5	0.679	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3R	26096845	3R_26096845_SNP [dm3] 3R_30271123_SNP [dm6]	C	A	1.629e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9533908	2R_9533908_SNP [dm3] 2R_13646403_SNP [dm6]	G	C	1.715e^-5	0.679	INTRON fas
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	1.798e^-5	0.679	INTRON Rgk2
X	18194609	X_18194609_SNP [dm3] X_18300576_SNP [dm6]	T	G	1.850e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	1327645	2L_1327645_SNP [dm3] 2L_1327645_SNP [dm6]	T	G	1.852e^-5	0.679	INTERGENIC
3R	9361240	3R_9361240_SNP [dm3] 3R_13535518_SNP [dm6]	G	C	1.858e^-5	0.679	INTERGENIC
2R	15259851	2R_15259851_SNP [dm3] 2R_19372346_SNP [dm6]	C	T	1.858e^-5	0.679	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	10531262	2R_10531262_SNP [dm3] 2R_14643757_SNP [dm6]	G	A	1.952e^-5	0.679	INTERGENIC
3L	5181777	3L_5181777_SNP [dm3] 3L_5188677_SNP [dm6]	C	G	1.975e^-5	0.679	INTRON shep	TF binding site BDTNP1_TFBS_twi
2L	4336288	2L_4336288_SNP [dm3] 2L_4336288_SNP [dm6]	A	G	1.998e^-5	0.679	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3207705	X_3207705_SNP [dm3] X_3313672_SNP [dm6]	A	G	2.018e^-5	0.679	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc & 1 other
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	2.050e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16337397	3R_16337397_DEL [dm3] 3R_20511675_DEL [dm6]	CG	C	2.091e^-5	0.679	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16197605	3L_16197605_SNP [dm3] 3L_16204505_SNP [dm6]	A	T	2.168e^-5	0.679	INTERGENIC
3R	16337409	3R_16337409_SNP [dm3] 3R_20511687_SNP [dm6]	G	T	2.227e^-5	0.679	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4141707	2L_4141707_SNP [dm3] 2L_4141707_SNP [dm6]	C	A	2.362e^-5	0.679	INTERGENIC
X	3174373	X_3174373_SNP [dm3] X_3280340_SNP [dm6]	G	A	2.461e^-5	0.679	SYNONYMOUS_CODING dnc UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1305552	2L_1305552_SNP [dm3] 2L_1305552_SNP [dm6]	T	C	2.496e^-5	0.679	INTERGENIC
2R	17788543	2R_17788543_SNP [dm3] 2R_21901038_SNP [dm6]	C	T	2.517e^-5	0.679	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7307474	3L_7307474_SNP [dm3] 3L_7314374_SNP [dm6]	T	A	2.534e^-5	0.679	INTERGENIC
2L	6307143	2L_6307143_SNP [dm3] 2L_6307143_SNP [dm6]	T	C	2.539e^-5	0.679	INTRON Ddr
3L	3614098	3L_3614098_SNP [dm3] 3L_3614098_SNP [dm6]	C	G	2.553e^-5	0.679	SYNONYMOUS_CODING CG10359
2L	7075772	2L_7075772_SNP [dm3] 2L_7075772_SNP [dm6]	T	C	2.577e^-5	0.679	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18171185	X_18171185_DEL [dm3] X_18277152_DEL [dm6]	AA	A	2.611e^-5	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4403510	2L_4403510_SNP [dm3] 2L_4403510_SNP [dm6]	T	C	2.635e^-5	0.679	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	604298	2L_604298_SNP [dm3] 2L_604298_SNP [dm6]	T	G	2.677e^-5	0.679	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
2L	7075694	2L_7075694_MNP [dm3] 2L_7075694_MNP [dm6]	TGG	CTA	2.693e^-5	0.679	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13924593	X_13924593_SNP [dm3] X_14030560_SNP [dm6]	T	A	2.738e^-5	0.679	INTERGENIC
2R	14422684	2R_14422684_SNP [dm3] 2R_18535179_SNP [dm6]	A	G	2.747e^-5	0.679	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
3R	26098308	3R_26098308_SNP [dm3] 3R_30272586_SNP [dm6]	G	A	2.747e^-5	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3578051	2R_3578051_SNP [dm3] 2R_7690546_SNP [dm6]	C	A	2.841e^-5	0.679	INTRON CG1399
2R	10544831	2R_10544831_SNP [dm3] 2R_14657326_SNP [dm6]	G	A	2.842e^-5	0.679	SYNONYMOUS_CODING Adgf-E
3L	11526703	3L_11526703_SNP [dm3] 3L_11533603_SNP [dm6]	T	G	2.851e^-5	0.679	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	16784856	2R_16784856_SNP [dm3] 2R_20897351_SNP [dm6]	G	A	2.903e^-5	0.679	UTR_5_PRIME otp INTRON otp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3577768	2R_3577768_SNP [dm3] 2R_7690263_SNP [dm6]	T	C	2.948e^-5	0.679	INTRON CG1399
2R	17788389	2R_17788389_SNP [dm3] 2R_21900884_SNP [dm6]	T	C	2.998e^-5	0.679	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15780436	2R_15780436_DEL [dm3] 2R_19892931_DEL [dm6]	TGGAATGGT	T	3.027e^-5	0.679	INTERGENIC
2R	15780509	2R_15780509_SNP [dm3] 2R_19893004_SNP [dm6]	A	T	3.049e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17788344	2R_17788344_SNP [dm3] 2R_21900839_SNP [dm6]	A	G	3.050e^-5	0.679	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16391655	2R_16391655_SNP [dm3] 2R_20504150_SNP [dm6]	G	A	3.153e^-5	0.679	NON_SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b & 1 other	regulatory region REDfly_CRMs
3R	1584643	3R_1584643_SNP [dm3] 3R_5758921_SNP [dm6]	C	T	3.160e^-5	0.679	UTR_5_PRIME Sec8 DOWNSTREAM CG2082 INTRON CG2082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	3.212e^-5	0.679	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23321310	3R_23321310_SNP [dm3] 3R_27495588_SNP [dm6]	T	C	3.217e^-5	0.679	INTERGENIC
X	18902691	X_18902691_SNP [dm3] X_19008658_SNP [dm6]	T	C	3.295e^-5	0.679	INTRON CG43759
2R	9533906	2R_9533906_SNP [dm3] 2R_13646401_SNP [dm6]	G	A	3.391e^-5	0.679	INTRON fas
3L	8918973	3L_8918973_SNP [dm3] 3L_8925873_SNP [dm6]	T	G	3.486e^-5	0.679	INTRON Tsp66E
3L	8692394	3L_8692394_DEL [dm3] 3L_8699294_DEL [dm6]	TT	T	3.541e^-5	0.679	INTERGENIC
2R	14422985	2R_14422985_SNP [dm3] 2R_18535480_SNP [dm6]	T	A	3.554e^-5	0.679	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
3R	24909336	3R_24909336_SNP [dm3] 3R_29083614_SNP [dm6]	C	T	3.576e^-5	0.679	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16003295	X_16003295_SNP [dm3] X_16109262_SNP [dm6]	T	C	3.609e^-5	0.679	INTERGENIC
3R	23467790	3R_23467790_SNP [dm3] 3R_27642068_SNP [dm6]	C	T	3.630e^-5	0.679	DOWNSTREAM mir-1001 INTRON tau
3L	8692440	3L_8692440_DEL [dm3] 3L_8699340_DEL [dm6]	TT	T	3.632e^-5	0.679	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13006730	2L_13006730_SNP [dm3] 2L_13006730_SNP [dm6]	G	A	3.675e^-5	0.679	SYNONYMOUS_CODING Tor
3L	10491232	3L_10491232_SNP [dm3] 3L_10498132_SNP [dm6]	T	A	3.696e^-5	0.679	INTRON A2bp1
X	17237067	X_17237067_SNP [dm3] X_17343034_SNP [dm6]	A	G	3.728e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19775179	2L_19775179_SNP [dm3] 2L_19775179_SNP [dm6]	T	A	3.747e^-5	0.679	UTR_3_PRIME CdGAPr
2R	15780627	2R_15780627_SNP [dm3] 2R_19893122_SNP [dm6]	A	G	3.752e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5336427	2L_5336427_SNP [dm3] 2L_5336427_SNP [dm6]	G	T	3.762e^-5	0.679	UPSTREAM fusl INTRON fusl
3R	24130741	3R_24130741_SNP [dm3] 3R_28305019_SNP [dm6]	G	A	3.818e^-5	0.679	UPSTREAM CG12516 INTERGENIC
3R	22659933	3R_22659933_SNP [dm3] 3R_26834211_SNP [dm6]	T	A	3.839e^-5	0.679	INTRON Tl	TF binding site mE1_TFBS_HSA
X	17158672	X_17158672_SNP [dm3] X_17264639_SNP [dm6]	G	A	3.906e^-5	0.679	UPSTREAM f INTRON f
2R	3578049	2R_3578049_SNP [dm3] 2R_7690544_SNP [dm6]	G	A	3.918e^-5	0.679	INTRON CG1399
3L	10693313	3L_10693313_DEL [dm3] 3L_10700213_DEL [dm6]	AATAT	A	4.028e^-5	0.679	INTERGENIC
3L	16197535	3L_16197535_SNP [dm3] 3L_16204435_SNP [dm6]	A	T	4.031e^-5	0.679	INTERGENIC
X	2595136	X_2595136_SNP [dm3] X_2701103_SNP [dm6]	A	T	4.128e^-5	0.679	DOWNSTREAM Csat & 1 other INTERGENIC
2L	3641454	2L_3641454_SNP [dm3] 2L_3641454_SNP [dm6]	G	A	4.197e^-5	0.679	INTRON for
3R	20375725	3R_20375725_INS [dm3] 3R_24550003_INS [dm6]	G	GG	4.238e^-5	0.679	INTRON Esyt2
2R	8333261	2R_8333261_SNP [dm3] 2R_12445756_SNP [dm6]	T	A	4.410e^-5	0.679	INTRON Dyb
X	16561085	X_16561085_SNP [dm3] X_16667052_SNP [dm6]	G	T	4.493e^-5	0.679	SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2595135	X_2595135_SNP [dm3] X_2701102_SNP [dm6]	G	A	4.531e^-5	0.679	DOWNSTREAM Csat & 1 other INTERGENIC
2R	14419409	2R_14419409_SNP [dm3] 2R_18531904_SNP [dm6]	C	G	4.532e^-5	0.679	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17236741	X_17236741_SNP [dm3] X_17342708_SNP [dm6]	A	T	4.533e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23460139	3R_23460139_SNP [dm3] 3R_27634417_SNP [dm6]	G	A	4.536e^-5	0.679	UTR_3_PRIME Tusp DOWNSTREAM CG5611	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7987324	3L_7987324_SNP [dm3] 3L_7994224_SNP [dm6]	C	A	4.633e^-5	0.679	INTRON nmo	TF binding site mE1_TFBS_cad
2L	4403450	2L_4403450_SNP [dm3] 2L_4403450_SNP [dm6]	T	C	4.728e^-5	0.679	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4403497	2L_4403497_SNP [dm3] 2L_4403497_SNP [dm6]	A	C	4.736e^-5	0.679	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8692397	3L_8692397_SNP [dm3] 3L_8699297_SNP [dm6]	T	G	4.760e^-5	0.679	INTERGENIC
3R	4875951	3R_4875951_SNP [dm3] 3R_9050229_SNP [dm6]	T	C	4.865e^-5	0.679	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	4873760	3R_4873760_SNP [dm3] 3R_9048038_SNP [dm6]	T	A	4.874e^-5	0.679	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	18171658	X_18171658_SNP [dm3] X_18277625_SNP [dm6]	G	T	4.879e^-5	0.679	INTRON upd3
3R	17266487	3R_17266487_SNP [dm3] 3R_21440765_SNP [dm6]	C	T	4.947e^-5	0.679	DOWNSTREAM lbe INTERGENIC
2R	14645120	2R_14645120_SNP [dm3] 2R_18757615_SNP [dm6]	G	A	5.003e^-5	0.679	SPLICE_SITE_REGION Jabba DOWNSTREAM Jabba & 1 other INTRON Jabba
2L	21929785	2L_21929785_SNP [dm3] 2L_21929785_SNP [dm6]	T	A	5.007e^-5	0.679	UPSTREAM CR45334 INTERGENIC
3L	7163461	3L_7163461_SNP [dm3] 3L_7170361_SNP [dm6]	G	A	5.020e^-5	0.679	DOWNSTREAM Dscam2 INTRON Dscam2
2L	5336428	2L_5336428_INS [dm3] 2L_5336428_INS [dm6]	A	ATTTTTA	5.048e^-5	0.679	UPSTREAM fusl INTRON fusl
2L	11670778	2L_11670778_SNP [dm3] 2L_11670778_SNP [dm6]	G	A	5.053e^-5	0.679	INTERGENIC
2L	4403508	2L_4403508_SNP [dm3] 2L_4403508_SNP [dm6]	C	T	5.058e^-5	0.679	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	227294	2L_227294_SNP [dm3] 2L_227294_SNP [dm6]	T	C	5.060e^-5	0.679	UPSTREAM CR44221 INTRON kis
2L	4685769	2L_4685769_SNP [dm3] 2L_4685769_SNP [dm6]	G	A	5.162e^-5	0.679	NON_SYNONYMOUS_CODING CG11929
X	13112703	X_13112703_SNP [dm3] X_13218670_SNP [dm6]	G	A	5.180e^-5	0.679	SPLICE_SITE_REGION mew INTRON mew	TF binding site mE1_TFBS_sens
2L	13006288	2L_13006288_SNP [dm3] 2L_13006288_SNP [dm6]	T	A	5.183e^-5	0.679	INTRON Tor
3R	23470921	3R_23470921_SNP [dm3] 3R_27645199_SNP [dm6]	G	A	5.187e^-5	0.679	INTRON tau	TF binding site BDTNP1_TFBS_prd
3R	14351029	3R_14351029_SNP [dm3] 3R_18525307_SNP [dm6]	A	T	5.224e^-5	0.679	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13297521	3L_13297521_SNP [dm3] 3L_13304421_SNP [dm6]	A	G	5.260e^-5	0.679	DOWNSTREAM CR44555 INTERGENIC
2L	604314	2L_604314_SNP [dm3] 2L_604314_SNP [dm6]	T	G	5.301e^-5	0.679	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
3R	14172041	3R_14172041_SNP [dm3] 3R_18346319_SNP [dm6]	G	C	5.308e^-5	0.679	INTRON CG15803
3R	16668053	3R_16668053_SNP [dm3] 3R_20842331_SNP [dm6]	T	A	5.310e^-5	0.679	UTR_5_PRIME CG15695
X	18170581	X_18170581_SNP [dm3] X_18276548_SNP [dm6]	G	A	5.350e^-5	0.679	UPSTREAM upd3 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16139733	3R_16139733_SNP [dm3] 3R_20314011_SNP [dm6]	C	T	5.377e^-5	0.679	INTRON CG42668
X	17298991	X_17298991_SNP [dm3] X_17404958_SNP [dm6]	T	C	5.447e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	7710951	3L_7710951_SNP [dm3] 3L_7717851_SNP [dm6]	C	T	5.469e^-5	0.679	UTR_5_PRIME Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20375766	3R_20375766_SNP [dm3] 3R_24550044_SNP [dm6]	T	A	5.577e^-5	0.679	INTRON Esyt2
X	16816588	X_16816588_SNP [dm3] X_16922555_SNP [dm6]	A	G	5.613e^-5	0.679	INTRON CG4928
3L	8736851	3L_8736851_SNP [dm3] 3L_8743751_SNP [dm6]	T	A	5.673e^-5	0.679	INTRON Prm	TF binding site BDTNP1_TFBS_twi
X	18171777	X_18171777_SNP [dm3] X_18277744_SNP [dm6]	C	A	5.721e^-5	0.679	INTRON upd3
X	17299039	X_17299039_SNP [dm3] X_17405006_SNP [dm6]	G	C	5.764e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	604242	2L_604242_SNP [dm3] 2L_604242_SNP [dm6]	C	A	5.802e^-5	0.679	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
3R	17769526	3R_17769526_SNP [dm3] 3R_21943804_SNP [dm6]	C	T	5.809e^-5	0.679	INTERGENIC
2R	12108123	2R_12108123_DEL [dm3] 2R_16220618_DEL [dm6]	TT	T	5.829e^-5	0.679	DOWNSTREAM tRNA:CR30239 & 1 other INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	15688628	3L_15688628_SNP [dm3] 3L_15695528_SNP [dm6]	G	C	5.852e^-5	0.679	INTERGENIC
2L	3944972	2L_3944972_SNP [dm3] 2L_3944972_SNP [dm6]	T	A	5.864e^-5	0.679	INTRON fred
2R	10544813	2R_10544813_SNP [dm3] 2R_14657308_SNP [dm6]	C	T	5.900e^-5	0.679	SYNONYMOUS_CODING Adgf-E
X	18170713	X_18170713_SNP [dm3] X_18276680_SNP [dm6]	A	G	5.935e^-5	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18748634	2R_18748634_SNP [dm3] 2R_22861111_SNP [dm6]	G	T	5.953e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18737270	X_18737270_SNP [dm3] X_18843237_SNP [dm6]	G	A	5.957e^-5	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	15244969	2R_15244969_SNP [dm3] 2R_19357464_SNP [dm6]	G	A	6.042e^-5	0.679	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14041503	3R_14041503_SNP [dm3] 3R_18215781_SNP [dm6]	T	C	6.072e^-5	0.679	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17285352	2R_17285352_INS [dm3] 2R_21397847_INS [dm6]	T	GGAAA	6.081e^-5	0.679	INTRON Sdc
2L	13006373	2L_13006373_SNP [dm3] 2L_13006373_SNP [dm6]	A	C	6.136e^-5	0.679	SYNONYMOUS_CODING Tor
X	4561091	X_4561091_SNP [dm3] X_4667058_SNP [dm6]	C	A	6.164e^-5	0.679	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	25656282	3R_25656282_SNP [dm3] 3R_29830560_SNP [dm6]	C	A	6.294e^-5	0.679	INTRON Atg16
2L	15046425	2L_15046425_SNP [dm3] 2L_15046425_SNP [dm6]	G	A	6.336e^-5	0.679	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2R	3578056	2R_3578056_SNP [dm3] 2R_7690551_SNP [dm6]	A	T	6.389e^-5	0.679	INTRON CG1399
3R	10227591	3R_10227591_SNP [dm3] 3R_14401869_SNP [dm6]	A	T	6.396e^-5	0.679	INTRON cv-c
X	18170649	X_18170649_SNP [dm3] X_18276616_SNP [dm6]	A	G	6.434e^-5	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16139992	3R_16139992_SNP [dm3] 3R_20314270_SNP [dm6]	A	G	6.452e^-5	0.679	INTRON CG42668
3R	18524027	3R_18524027_SNP [dm3] 3R_22698305_SNP [dm6]	T	C	6.463e^-5	0.679	UPSTREAM Cyp6d4 DOWNSTREAM cd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	18170645	X_18170645_SNP [dm3] X_18276612_SNP [dm6]	G	A	6.472e^-5	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12405658	2R_12405658_SNP [dm3] 2R_16518153_SNP [dm6]	A	T	6.490e^-5	0.679	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	18969576	2R_18969576_SNP [dm3] 2R_23082053_SNP [dm6]	T	A	6.542e^-5	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
X	18061412	X_18061412_SNP [dm3] X_18167379_SNP [dm6]	C	T	6.873e^-5	0.679	INTRON Frq1
3R	23452996	3R_23452996_SNP [dm3] 3R_27627274_SNP [dm6]	G	C	6.880e^-5	0.679	INTRON Tusp
3R	6691058	3R_6691058_SNP [dm3] 3R_10865336_SNP [dm6]	T	G	6.985e^-5	0.679	UTR_3_PRIME SelR INTRON SelR
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	6.996e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16337500	3R_16337500_SNP [dm3] 3R_20511778_SNP [dm6]	C	A	7.074e^-5	0.679	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25876114	3R_25876114_SNP [dm3] 3R_30050392_SNP [dm6]	C	G	7.334e^-5	0.679	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16243676	2L_16243676_SNP [dm3] 2L_16243676_SNP [dm6]	T	C	7.435e^-5	0.679	SYNONYMOUS_CODING CG42818
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	7.462e^-5	0.679	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18278761	3L_18278761_SNP [dm3] 3L_18285661_SNP [dm6]	C	T	7.465e^-5	0.679	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	16337525	3R_16337525_SNP [dm3] 3R_20511803_SNP [dm6]	A	G	7.575e^-5	0.679	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16352341	3L_16352341_DEL [dm3] 3L_16359241_DEL [dm6]	AAA	C	7.607e^-5	0.679	INTRON CG45057	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
2R	2419358	2R_2419358_SNP [dm3] 2R_6531853_SNP [dm6]	G	T	7.663e^-5	0.679	DOWNSTREAM CR43905 INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9972740	2L_9972740_SNP [dm3] 2L_9972740_SNP [dm6]	A	G	7.693e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14569106	2L_14569106_SNP [dm3] 2L_14569106_SNP [dm6]	A	G	7.709e^-5	0.679	INTERGENIC
2R	18748667	2R_18748667_SNP [dm3] 2R_22861144_SNP [dm6]	T	G	7.715e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8226011	2L_8226011_SNP [dm3] 2L_8226011_SNP [dm6]	T	C	7.737e^-5	0.679	SYNONYMOUS_CODING Pvr
2L	5876005	2L_5876005_SNP [dm3] 2L_5876005_SNP [dm6]	T	C	7.782e^-5	0.679	INTRON rau
2L	6049192	2L_6049192_SNP [dm3] 2L_6049192_SNP [dm6]	C	A	7.806e^-5	0.679	SYNONYMOUS_CODING CG12393 UPSTREAM CG34179 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5336484	2L_5336484_SNP [dm3] 2L_5336484_SNP [dm6]	G	A	7.809e^-5	0.679	UPSTREAM fusl INTRON fusl
3R	14700966	3R_14700966_SNP [dm3] 3R_18875244_SNP [dm6]	T	C	7.981e^-5	0.679	UPSTREAM CG14298 INTERGENIC
2L	13006148	2L_13006148_SNP [dm3] 2L_13006148_SNP [dm6]	A	G	8.053e^-5	0.679	INTRON Tor
2R	6831116	2R_6831116_INS [dm3] 2R_10943611_INS [dm6]	A	ATCAGCA	8.070e^-5	0.679	INTERGENIC
3L	13297488	3L_13297488_SNP [dm3] 3L_13304388_SNP [dm6]	A	G	8.088e^-5	0.679	DOWNSTREAM CR44555 INTERGENIC
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	8.180e^-5	0.679	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4564071	2L_4564071_SNP [dm3] 2L_4564071_SNP [dm6]	T	C	8.195e^-5	0.679	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9418076	3R_9418076_SNP [dm3] 3R_13592354_SNP [dm6]	T	A	8.206e^-5	0.679	SYNONYMOUS_CODING CG14369
X	17236793	X_17236793_SNP [dm3] X_17342760_SNP [dm6]	A	G	8.311e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18748623	2R_18748623_INS [dm3] 2R_22861100_INS [dm6]	T	TGTAAGCGAT	8.382e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18748627	2R_18748627_SNP [dm3] 2R_22861104_SNP [dm6]	T	G	8.382e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5920666	2L_5920666_SNP [dm3] 2L_5920666_SNP [dm6]	T	C	8.403e^-5	0.679	SYNONYMOUS_CODING bchs
2R	17810675	2R_17810675_SNP [dm3] 2R_21923170_SNP [dm6]	G	A	8.415e^-5	0.679	INTRON Fili
3L	13297528	3L_13297528_SNP [dm3] 3L_13304428_SNP [dm6]	T	A	8.436e^-5	0.679	DOWNSTREAM CR44555 INTERGENIC
2L	5336443	2L_5336443_SNP [dm3] 2L_5336443_SNP [dm6]	G	T	8.512e^-5	0.679	UPSTREAM fusl INTRON fusl
2L	5336445	2L_5336445_INS [dm3] 2L_5336445_INS [dm6]	CCA	TTTGG	8.512e^-5	0.679	UPSTREAM fusl INTRON fusl
2L	10729695	2L_10729695_SNP [dm3] 2L_10729695_SNP [dm6]	T	C	8.525e^-5	0.679	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118 DOWNSTREAM CG6431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12493569	X_12493569_SNP [dm3] X_12599536_SNP [dm6]	G	T	8.547e^-5	0.679	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	604262	2L_604262_SNP [dm3] 2L_604262_SNP [dm6]	T	A	8.582e^-5	0.679	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
2L	5336451	2L_5336451_SNP [dm3] 2L_5336451_SNP [dm6]	A	T	8.595e^-5	0.679	UPSTREAM fusl INTRON fusl
X	16816557	X_16816557_SNP [dm3] X_16922524_SNP [dm6]	T	G	8.637e^-5	0.679	INTRON CG4928
2R	18005133	2R_18005133_SNP [dm3] 2R_22117628_SNP [dm6]	A	C	8.701e^-5	0.679	INTRON Vrp1
2L	21929769	2L_21929769_SNP [dm3] 2L_21929769_SNP [dm6]	T	A	8.773e^-5	0.679	UPSTREAM CR45334 INTERGENIC
3L	13297526	3L_13297526_SNP [dm3] 3L_13304426_SNP [dm6]	A	T	8.778e^-5	0.679	DOWNSTREAM CR44555 INTERGENIC
3R	17769455	3R_17769455_SNP [dm3] 3R_21943733_SNP [dm6]	A	C	8.846e^-5	0.679	INTERGENIC
3L	18278720	3L_18278720_SNP [dm3] 3L_18285620_SNP [dm6]	A	G	8.862e^-5	0.679	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	8.875e^-5	0.679	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18748673	2R_18748673_SNP [dm3] 2R_22861150_SNP [dm6]	C	G	8.901e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18524031	3R_18524031_SNP [dm3] 3R_22698309_SNP [dm6]	G	A	8.931e^-5	0.679	UPSTREAM Cyp6d4 DOWNSTREAM cd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7307472	3L_7307472_SNP [dm3] 3L_7314372_SNP [dm6]	C	G	8.938e^-5	0.679	INTERGENIC
2L	1286926	2L_1286926_SNP [dm3] 2L_1286926_SNP [dm6]	C	A	8.947e^-5	0.679	NON_SYNONYMOUS_CODING robo3
3L	11526683	3L_11526683_SNP [dm3] 3L_11533583_SNP [dm6]	T	A	8.967e^-5	0.679	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	16243679	2L_16243679_SNP [dm3] 2L_16243679_SNP [dm6]	A	C	8.995e^-5	0.679	SYNONYMOUS_CODING CG42818
3R	4862910	3R_4862910_SNP [dm3] 3R_9037188_SNP [dm6]	C	T	9.035e^-5	0.679	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5596273	2L_5596273_SNP [dm3] 2L_5596273_SNP [dm6]	C	A	9.100e^-5	0.679	UPSTREAM CG18266 INTERGENIC
2R	5317353	2R_5317353_SNP [dm3] 2R_9429848_SNP [dm6]	C	T	9.100e^-5	0.679	INTRON Pdk
X	12201048	X_12201048_SNP [dm3] X_12307015_SNP [dm6]	C	G	9.118e^-5	0.679	INTRON Ten-a
X	7987515	X_7987515_SNP [dm3] X_8093482_SNP [dm6]	A	G	9.128e^-5	0.679	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17285188	2R_17285188_SNP [dm3] 2R_21397683_SNP [dm6]	A	C	9.142e^-5	0.679	INTRON Sdc
2R	13933740	2R_13933740_SNP [dm3] 2R_18046235_SNP [dm6]	G	A	9.156e^-5	0.679	DOWNSTREAM CG5767 INTERGENIC
3R	11700476	3R_11700476_SNP [dm3] 3R_15874754_SNP [dm6]	A	T	9.219e^-5	0.679	INTRON CG31183
3R	24135066	3R_24135066_SNP [dm3] 3R_28309344_SNP [dm6]	C	A	9.263e^-5	0.679	INTERGENIC
3R	16337378	3R_16337378_SNP [dm3] 3R_20511656_SNP [dm6]	T	A	9.273e^-5	0.679	INTRON CG4288	TF binding site mE1_TFBS_sbb
2L	5876151	2L_5876151_SNP [dm3] 2L_5876151_SNP [dm6]	T	A	9.278e^-5	0.679	INTRON rau
3R	23474545	3R_23474545_SNP [dm3] 3R_27648823_SNP [dm6]	G	T	9.285e^-5	0.679	NON_SYNONYMOUS_CODING tau INTRON tau
3R	14651063	3R_14651063_SNP [dm3] 3R_18825341_SNP [dm6]	T	A	9.318e^-5	0.679	INTRON CG18208
2L	4141679	2L_4141679_SNP [dm3] 2L_4141679_SNP [dm6]	A	G	9.384e^-5	0.679	INTERGENIC
2L	1903607	2L_1903607_INS [dm3] 2L_1903607_INS [dm6]	G	GATCATGTCTGTTG...	9.485e^-5	0.679	INTRON CG7337
2L	2843696	2L_2843696_SNP [dm3] 2L_2843696_SNP [dm6]	G	A	9.549e^-5	0.679	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad
3R	23470151	3R_23470151_SNP [dm3] 3R_27644429_SNP [dm6]	A	C	9.652e^-5	0.679	SPLICE_SITE_REGION tau INTRON tau
3R	14431046	3R_14431046_SNP [dm3] 3R_18605324_SNP [dm6]	G	C	9.669e^-5	0.679	INTRON qin & 1 other
2L	5336441	2L_5336441_SNP [dm3] 2L_5336441_SNP [dm6]	C	A	9.691e^-5	0.679	UPSTREAM fusl INTRON fusl
3R	22897573	3R_22897573_SNP [dm3] 3R_27071851_SNP [dm6]	T	G	9.843e^-5	0.679	INTERGENIC
3R	10227587	3R_10227587_SNP [dm3] 3R_14401865_SNP [dm6]	T	A	9.951e^-5	0.679	INTRON cv-c
3L	2402665	3L_2402665_SNP [dm3] 3L_2402665_SNP [dm6]	C	A	9.959e^-5	0.679	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
2R	18748671	2R_18748671_SNP [dm3] 2R_22861148_SNP [dm6]	G	A	9.974e^-5	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3876336	X_3876336_SNP [dm3] X_3982303_SNP [dm6]	A	G	9.991e^-5	0.679	INTERGENIC
X	15320241	X_15320241_SNP [dm3] X_15426208_SNP [dm6]	A	G	1.006e^-4	0.679	INTRON Cngl
2L	4709778	2L_4709778_SNP [dm3] 2L_4709778_SNP [dm6]	A	G	1.018e^-4	0.679	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23496832	3R_23496832_SNP [dm3] 3R_27671110_SNP [dm6]	G	A	1.019e^-4	0.679	SYNONYMOUS_CODING unc80
2L	4210755	2L_4210755_SNP [dm3] 2L_4210755_SNP [dm6]	T	A	1.019e^-4	0.679	INTRON ft
2R	17786789	2R_17786789_SNP [dm3] 2R_21899284_SNP [dm6]	C	T	1.023e^-4	0.679	INTRON Fili
2L	16813657	2L_16813657_SNP [dm3] 2L_16813657_SNP [dm6]	T	C	1.026e^-4	0.679	SYNONYMOUS_CODING CG13272 INTRON CG13280
2L	6342367	2L_6342367_SNP [dm3] 2L_6342367_SNP [dm6]	T	A	1.027e^-4	0.679	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18170709	X_18170709_SNP [dm3] X_18276676_SNP [dm6]	A	G	1.032e^-4	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8980523	2R_8980523_SNP [dm3] 2R_13093018_SNP [dm6]	T	G	1.033e^-4	0.679	INTERGENIC
X	15320269	X_15320269_SNP [dm3] X_15426236_SNP [dm6]	G	T	1.034e^-4	0.679	INTRON Cngl
3L	13667440	3L_13667440_SNP [dm3] 3L_13674340_SNP [dm6]	A	G	1.036e^-4	0.679	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	17636828	X_17636828_SNP [dm3] X_17742795_SNP [dm6]	G	C	1.042e^-4	0.679	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	15244958	2R_15244958_SNP [dm3] 2R_19357453_SNP [dm6]	G	A	1.043e^-4	0.679	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18989773	2R_18989773_SNP [dm3] 2R_23102250_SNP [dm6]	C	G	1.047e^-4	0.679	UPSTREAM CG42703 DOWNSTREAM Gr59c INTERGENIC
2R	18748553	2R_18748553_SNP [dm3] 2R_22861030_SNP [dm6]	C	A	1.049e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18748676	2R_18748676_SNP [dm3] 2R_22861153_SNP [dm6]	T	G	1.055e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18362231	2R_18362231_SNP [dm3] 2R_22474726_SNP [dm6]	A	C	1.058e^-4	0.679	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3R	26096818	3R_26096818_SNP [dm3] 3R_30271096_SNP [dm6]	T	C	1.063e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13168126	3R_13168126_SNP [dm3] 3R_17342404_SNP [dm6]	A	G	1.063e^-4	0.679	INTRON beat-IIa
3L	13297548	3L_13297548_SNP [dm3] 3L_13304448_SNP [dm6]	T	A	1.068e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
3R	23450613	3R_23450613_SNP [dm3] 3R_27624891_SNP [dm6]	A	T	1.070e^-4	0.679	INTRON Tusp & 1 other
X	7982396	X_7982396_SNP [dm3] X_8088363_SNP [dm6]	T	A	1.081e^-4	0.679	UTR_3_PRIME Ubc-E2H
3L	18411596	3L_18411596_SNP [dm3] 3L_18418496_SNP [dm6]	A	T	1.085e^-4	0.679	INTERGENIC
3L	13129972	3L_13129972_SNP [dm3] 3L_13136872_SNP [dm6]	T	C	1.086e^-4	0.679	INTRON CG33262
3L	11549957	3L_11549957_SNP [dm3] 3L_11556857_SNP [dm6]	G	A	1.087e^-4	0.679	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1960737	2L_1960737_SNP [dm3] 2L_1960737_SNP [dm6]	T	A	1.091e^-4	0.679	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5336464	2L_5336464_SNP [dm3] 2L_5336464_SNP [dm6]	T	A	1.095e^-4	0.679	UPSTREAM fusl INTRON fusl
3L	14770098	3L_14770098_SNP [dm3] 3L_14776998_SNP [dm6]	A	C	1.097e^-4	0.679	UPSTREAM mop INTRON bmm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11526784	3L_11526784_SNP [dm3] 3L_11533684_SNP [dm6]	C	T	1.099e^-4	0.679	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	16544269	2L_16544269_SNP [dm3] 2L_16544269_SNP [dm6]	C	A	1.100e^-4	0.679	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18748629	2R_18748629_SNP [dm3] 2R_22861106_SNP [dm6]	G	T	1.108e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14687773	2L_14687773_SNP [dm3] 2L_14687773_SNP [dm6]	A	G	1.111e^-4	0.679	INTRON osp
3R	23321143	3R_23321143_SNP [dm3] 3R_27495421_SNP [dm6]	C	A	1.112e^-4	0.679	INTERGENIC
3L	13850528	3L_13850528_SNP [dm3] 3L_13857428_SNP [dm6]	G	A	1.116e^-4	0.679	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4399097	X_4399097_SNP [dm3] X_4505064_SNP [dm6]	A	T	1.116e^-4	0.679	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14431048	3R_14431048_SNP [dm3] 3R_18605326_SNP [dm6]	A	C	1.116e^-4	0.679	INTRON qin & 1 other
2R	11615991	2R_11615991_DEL [dm3] 2R_15728486_DEL [dm6]	GTG	G	1.119e^-4	0.679	INTRON CG30089
X	3253896	X_3253896_SNP [dm3] X_3359863_SNP [dm6]	C	T	1.122e^-4	0.679	INTERGENIC
3L	11553269	3L_11553269_SNP [dm3] 3L_11560169_SNP [dm6]	G	A	1.128e^-4	0.679	INTRON Mob2
2R	9139434	2R_9139434_SNP [dm3] 2R_13251929_SNP [dm6]	A	C	1.138e^-4	0.679	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
3R	16064995	3R_16064995_SNP [dm3] 3R_20239273_SNP [dm6]	T	A	1.139e^-4	0.679	INTRON Nlg4
3R	16603324	3R_16603324_SNP [dm3] 3R_20777602_SNP [dm6]	C	G	1.148e^-4	0.679	INTRON Syp
X	10005753	X_10005753_SNP [dm3] X_10111720_SNP [dm6]	C	T	1.149e^-4	0.679	INTRON RhoU
2R	8333216	2R_8333216_SNP [dm3] 2R_12445711_SNP [dm6]	A	T	1.151e^-4	0.679	INTRON Dyb
3R	4996216	3R_4996216_SNP [dm3] 3R_9170494_SNP [dm6]	T	C	1.155e^-4	0.679	INTRON pum
2R	12111878	2R_12111878_SNP [dm3] 2R_16224373_SNP [dm6]	C	T	1.161e^-4	0.679	NON_SYNONYMOUS_CODING CG15706
3R	6889674	3R_6889674_SNP [dm3] 3R_11063952_SNP [dm6]	G	A	1.162e^-4	0.679	INTERGENIC
3L	1999748	3L_1999748_SNP [dm3] 3L_1999748_SNP [dm6]	A	T	1.167e^-4	0.679	INTERGENIC
2L	6342368	2L_6342368_SNP [dm3] 2L_6342368_SNP [dm6]	G	T	1.168e^-4	0.679	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6342371	2L_6342371_SNP [dm3] 2L_6342371_SNP [dm6]	C	T	1.168e^-4	0.679	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8226035	2L_8226035_SNP [dm3] 2L_8226035_SNP [dm6]	C	T	1.169e^-4	0.679	SYNONYMOUS_CODING Pvr
X	17236871	X_17236871_SNP [dm3] X_17342838_SNP [dm6]	T	G	1.173e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13297519	3L_13297519_SNP [dm3] 3L_13304419_SNP [dm6]	T	A	1.173e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
2L	11287213	2L_11287213_SNP [dm3] 2L_11287213_SNP [dm6]	C	T	1.175e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5591392	2R_5591392_SNP [dm3] 2R_9703887_SNP [dm6]	C	G	1.176e^-4	0.679	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	213642	2L_213642_SNP [dm3] 2L_213642_SNP [dm6]	A	T	1.177e^-4	0.679	NON_SYNONYMOUS_CODING kis	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3069864	2L_3069864_SNP [dm3] 2L_3069864_SNP [dm6]	G	A	1.178e^-4	0.679	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18750179	2R_18750179_SNP [dm3] 2R_22862656_SNP [dm6]	C	A	1.178e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18170706	X_18170706_SNP [dm3] X_18276673_SNP [dm6]	T	A	1.180e^-4	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21089263	3R_21089263_SNP [dm3] 3R_25263541_SNP [dm6]	G	A	1.180e^-4	0.679	NON_SYNONYMOUS_CODING Aats-gln DOWNSTREAM CG11858	TF binding site mE1_TFBS_chinmo
2R	18541149	2R_18541149_SNP [dm3] 2R_22653644_SNP [dm6]	G	C	1.181e^-4	0.679	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr
3R	6832974	3R_6832974_SNP [dm3] 3R_11007252_SNP [dm6]	G	A	1.184e^-4	0.679	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17297200	X_17297200_SNP [dm3] X_17403167_SNP [dm6]	C	G	1.186e^-4	0.679	UTR_3_PRIME B-H1
3L	8956651	3L_8956651_SNP [dm3] 3L_8963551_SNP [dm6]	C	T	1.187e^-4	0.679	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6049228	2L_6049228_SNP [dm3] 2L_6049228_SNP [dm6]	A	C	1.191e^-4	0.679	NON_SYNONYMOUS_CODING CG12393 UPSTREAM CG34179 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9941996	X_9941996_SNP [dm3] X_10047963_SNP [dm6]	C	T	1.199e^-4	0.679	INTRON Cht6 EXON CR45185 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15688992	3L_15688992_SNP [dm3] 3L_15695892_SNP [dm6]	T	C	1.205e^-4	0.679	INTERGENIC
3R	17875093	3R_17875093_SNP [dm3] 3R_22049371_SNP [dm6]	A	G	1.212e^-4	0.679	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1999747	3L_1999747_SNP [dm3] 3L_1999747_SNP [dm6]	C	A	1.215e^-4	0.679	INTERGENIC
3R	6836517	3R_6836517_DEL [dm3] 3R_11010795_DEL [dm6]	GAAAATGTAGCTTCTC...	G	1.218e^-4	0.679	INTRON CG34114
2L	4211471	2L_4211471_SNP [dm3] 2L_4211471_SNP [dm6]	A	G	1.220e^-4	0.679	INTRON ft
3L	13753097	3L_13753097_SNP [dm3] 3L_13759997_SNP [dm6]	A	T	1.222e^-4	0.679	INTRON bru-3
2L	4571217	2L_4571217_SNP [dm3] 2L_4571217_SNP [dm6]	T	C	1.225e^-4	0.679	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23281544	3R_23281544_SNP [dm3] 3R_27455822_SNP [dm6]	C	A	1.226e^-4	0.679	INTERGENIC
3L	1930607	3L_1930607_SNP [dm3] 3L_1930607_SNP [dm6]	G	T	1.233e^-4	0.679	INTRON Dbx
2R	13805090	2R_13805090_INS [dm3] 2R_17917585_INS [dm6]	C	CCTC	1.234e^-4	0.679	INTRON Elk
2R	7959018	2R_7959018_SNP [dm3] 2R_12071513_SNP [dm6]	T	G	1.236e^-4	0.679	INTRON CG8888
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	1.236e^-4	0.679	INTRON CG42747
X	18222824	X_18222824_SNP [dm3] X_18328791_SNP [dm6]	G	A	1.239e^-4	0.679	INTRON CG6123
2L	1380358	2L_1380358_SNP [dm3] 2L_1380358_SNP [dm6]	T	A	1.244e^-4	0.679	UTR_3_PRIME lea UPSTREAM CR44897 EXON CR44898
2R	16274199	2R_16274199_SNP [dm3] 2R_20386694_SNP [dm6]	A	T	1.244e^-4	0.679	INTERGENIC
3R	4997466	3R_4997466_SNP [dm3] 3R_9171744_SNP [dm6]	A	T	1.251e^-4	0.679	INTRON pum
3R	2271363	3R_2271363_SNP [dm3] 3R_6445641_SNP [dm6]	A	G	1.255e^-4	0.679	SYNONYMOUS_CODING gpp DOWNSTREAM gpp INTRON gpp
3R	22740350	3R_22740350_SNP [dm3] 3R_26914628_SNP [dm6]	A	G	1.258e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1930604	3L_1930604_SNP [dm3] 3L_1930604_SNP [dm6]	G	A	1.267e^-4	0.679	INTRON Dbx
2R	18750167	2R_18750167_SNP [dm3] 2R_22862644_SNP [dm6]	T	A	1.268e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25616118	3R_25616118_SNP [dm3] 3R_29790396_SNP [dm6]	C	A	1.271e^-4	0.679	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
3R	4998854	3R_4998854_SNP [dm3] 3R_9173132_SNP [dm6]	A	G	1.272e^-4	0.679	INTRON pum
3L	3729917	3L_3729917_SNP [dm3] 3L_3729917_SNP [dm6]	T	G	1.273e^-4	0.679	INTRON CG32264
2R	17285383	2R_17285383_SNP [dm3] 2R_21397878_SNP [dm6]	C	T	1.274e^-4	0.679	INTRON Sdc
3L	13129981	3L_13129981_SNP [dm3] 3L_13136881_SNP [dm6]	T	A	1.279e^-4	0.679	INTRON CG33262
X	18170714	X_18170714_SNP [dm3] X_18276681_SNP [dm6]	A	T	1.283e^-4	0.679	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13256578	2L_13256578_SNP [dm3] 2L_13256578_SNP [dm6]	C	G	1.290e^-4	0.679	UPSTREAM CG31851 INTRON CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13466019	3L_13466019_MNP [dm3] 3L_13472919_MNP [dm6]	AGC	GAT	1.291e^-4	0.679	INTRON CG10089
X	16416524	X_16416524_SNP [dm3] X_16522491_SNP [dm6]	A	C	1.292e^-4	0.679	DOWNSTREAM Cnx14D INTRON para
3R	6836567	3R_6836567_SNP [dm3] 3R_11010845_SNP [dm6]	A	G	1.294e^-4	0.679	INTRON CG34114
3R	10084880	3R_10084880_SNP [dm3] 3R_14259158_SNP [dm6]	C	A	1.298e^-4	0.679	SYNONYMOUS_CODING Aats-met
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	1.300e^-4	0.679	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9835777	2R_9835777_SNP [dm3] 2R_13948272_SNP [dm6]	G	A	1.301e^-4	0.679	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22666386	3R_22666386_SNP [dm3] 3R_26840664_SNP [dm6]	G	A	1.302e^-4	0.679	SYNONYMOUS_CODING Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	1.303e^-4	0.679	INTRON ome	regulatory region REDfly_CRMs
2L	203434	2L_203434_DEL [dm3] 2L_203434_DEL [dm6]	TTGT	T	1.306e^-4	0.679	UPSTREAM mRpL10 DOWNSTREAM spen INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12987340	2L_12987340_SNP [dm3] 2L_12987340_SNP [dm6]	T	A	1.317e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4992367	3R_4992367_SNP [dm3] 3R_9166645_SNP [dm6]	A	T	1.324e^-4	0.679	INTRON pum
2R	14507877	2R_14507877_SNP [dm3] 2R_18620372_SNP [dm6]	T	A	1.347e^-4	0.679	DOWNSTREAM Atg7 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15224236	2L_15224236_SNP [dm3] 2L_15224236_SNP [dm6]	T	C	1.348e^-4	0.679	INTERGENIC
X	16789085	X_16789085_SNP [dm3] X_16895052_SNP [dm6]	G	A	1.349e^-4	0.679	INTERGENIC
3L	5761968	3L_5761968_SNP [dm3] 3L_5768868_SNP [dm6]	G	A	1.353e^-4	0.679	UPSTREAM scny & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	23436180	3R_23436180_SNP [dm3] 3R_27610458_SNP [dm6]	G	T	1.353e^-4	0.679	INTRON Tusp
2L	2256974	2L_2256974_SNP [dm3] 2L_2256974_SNP [dm6]	T	A	1.358e^-4	0.679	DOWNSTREAM CR44787 INTERGENIC
2L	4149267	2L_4149267_SNP [dm3] 2L_4149267_SNP [dm6]	C	G	1.360e^-4	0.679	UPSTREAM CG2955 INTERGENIC
2L	8226020	2L_8226020_SNP [dm3] 2L_8226020_SNP [dm6]	A	G	1.361e^-4	0.679	SYNONYMOUS_CODING Pvr
3R	26098341	3R_26098341_INS [dm3] 3R_30272619_INS [dm6]	T	TT	1.365e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23474519	3R_23474519_SNP [dm3] 3R_27648797_SNP [dm6]	C	T	1.365e^-4	0.679	NON_SYNONYMOUS_CODING tau INTRON tau	TF binding site mE1_TFBS_chinmo
X	18170572	X_18170572_SNP [dm3] X_18276539_SNP [dm6]	C	A	1.365e^-4	0.679	UPSTREAM upd3 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	3381314	3R_3381314_SNP [dm3] 3R_7555592_SNP [dm6]	A	T	1.367e^-4	0.679	INTERGENIC
3R	25822411	3R_25822411_SNP [dm3] 3R_29996689_SNP [dm6]	G	A	1.368e^-4	0.679	SYNONYMOUS_CODING Sas-6 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10003819	3R_10003819_SNP [dm3] 3R_14178097_SNP [dm6]	A	G	1.371e^-4	0.679	SYNONYMOUS_CODING Dop1R1
2L	6342360	2L_6342360_DEL [dm3] 2L_6342360_DEL [dm6]	TTAA	T	1.375e^-4	0.679	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6342365	2L_6342365_SNP [dm3] 2L_6342365_SNP [dm6]	T	G	1.375e^-4	0.679	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16425528	2R_16425528_SNP [dm3] 2R_20538023_SNP [dm6]	C	T	1.376e^-4	0.679	NON_SYNONYMOUS_CODING CG13423 DOWNSTREAM CG13427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	17236790	X_17236790_SNP [dm3] X_17342757_SNP [dm6]	G	T	1.384e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16139581	3R_16139581_DEL [dm3] 3R_20313859_DEL [dm6]	AA	A	1.384e^-4	0.679	INTRON CG42668
2L	526695	2L_526695_SNP [dm3] 2L_526695_SNP [dm6]	T	G	1.387e^-4	0.679	INTRON ush	regulatory region REDfly_CRMs
X	14788103	X_14788103_SNP [dm3] X_14894070_SNP [dm6]	G	T	1.393e^-4	0.679	INTRON Flo2 & 1 other
3L	10326377	3L_10326377_SNP [dm3] 3L_10333277_SNP [dm6]	T	C	1.396e^-4	0.679	INTERGENIC
X	10782877	X_10782877_SNP [dm3] X_10888844_SNP [dm6]	T	G	1.397e^-4	0.679	INTRON Ork1
3R	25824732	3R_25824732_SNP [dm3] 3R_29999010_SNP [dm6]	G	A	1.407e^-4	0.679	NON_SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9627900	3R_9627900_SNP [dm3] 3R_13802178_SNP [dm6]	C	T	1.415e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7756224	3L_7756224_SNP [dm3] 3L_7763124_SNP [dm6]	A	T	1.420e^-4	0.679	UTR_3_PRIME Hn DOWNSTREAM Clk
X	5966915	X_5966915_SNP [dm3] X_6072882_SNP [dm6]	T	G	1.427e^-4	0.679	UTR_5_PRIME Tsp5D INTRON Tsp5D	TF binding site mE1_TFBS_HSA
3L	7756243	3L_7756243_SNP [dm3] 3L_7763143_SNP [dm6]	A	C	1.431e^-4	0.679	UTR_3_PRIME Hn DOWNSTREAM Clk
2R	2499282	2R_2499282_SNP [dm3] 2R_6611777_SNP [dm6]	T	C	1.435e^-4	0.679	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	11461531	2R_11461531_SNP [dm3] 2R_15574026_SNP [dm6]	C	T	1.438e^-4	0.679	UPSTREAM CG8204 DOWNSTREAM CG30466 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	23474532	3R_23474532_INS [dm3] 3R_27648810_INS [dm6]	G	GTTG	1.440e^-4	0.679	CODON_INSERTION tau INTRON tau
3R	23443213	3R_23443213_SNP [dm3] 3R_27617491_SNP [dm6]	T	C	1.445e^-4	0.679	INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	1.447e^-4	0.679	INTRON Oamb
3R	5894222	3R_5894222_SNP [dm3] 3R_10068500_SNP [dm6]	C	T	1.450e^-4	0.679	SYNONYMOUS_CODING CG33784 DOWNSTREAM CG33783
2L	16470343	2L_16470343_DEL [dm3] 2L_16470343_DEL [dm6]	GG	G	1.455e^-4	0.679	INTRON dac	regulatory region REDfly_CRMs
2L	8519679	2L_8519679_SNP [dm3] 2L_8519679_SNP [dm6]	T	C	1.462e^-4	0.679	UPSTREAM CG13091 DOWNSTREAM CG13090 INTERGENIC
3R	20688456	3R_20688456_DEL [dm3] 3R_24862734_DEL [dm6]	TT	T	1.466e^-4	0.679	UPSTREAM CG7016 & 1 other INTERGENIC
2R	16082882	2R_16082882_SNP [dm3] 2R_20195377_SNP [dm6]	T	G	1.472e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13047029	2R_13047029_SNP [dm3] 2R_17159524_SNP [dm6]	T	A	1.474e^-4	0.679	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
X	18122939	X_18122939_SNP [dm3] X_18228906_SNP [dm6]	G	A	1.483e^-4	0.679	UPSTREAM CR45622 INTERGENIC
X	13232472	X_13232472_SNP [dm3] X_13338439_SNP [dm6]	C	T	1.484e^-4	0.679	UPSTREAM RpS15Aa INTRON CG15747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	18737232	X_18737232_SNP [dm3] X_18843199_SNP [dm6]	T	G	1.484e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	7961949	3R_7961949_SNP [dm3] 3R_12136227_SNP [dm6]	C	G	1.489e^-4	0.679	INTERGENIC
X	18737255	X_18737255_SNP [dm3] X_18843222_SNP [dm6]	A	T	1.490e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18134295	X_18134295_SNP [dm3] X_18240262_SNP [dm6]	C	T	1.496e^-4	0.679	DOWNSTREAM upd2 INTERGENIC
3L	13297450	3L_13297450_SNP [dm3] 3L_13304350_SNP [dm6]	G	A	1.504e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
3R	1522339	3R_1522339_SNP [dm3] 3R_5696617_SNP [dm6]	A	G	1.505e^-4	0.679	INTRON plx	TF binding site mE1_TFBS_cad
2L	142608	2L_142608_SNP [dm3] 2L_142608_SNP [dm6]	C	A	1.507e^-4	0.679	START_GAINED CG31974 UTR_5_PRIME CG31974 UPSTREAM CG11454 & 1 other INTRON CG11455	TF binding site mE1_TFBS_sens
3L	19162017	3L_19162017_SNP [dm3] 3L_19168917_SNP [dm6]	G	A	1.508e^-4	0.679	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23470681	3R_23470681_SNP [dm3] 3R_27644959_SNP [dm6]	C	G	1.517e^-4	0.679	INTRON tau	TF binding site BDTNP1_TFBS_prd
3R	10227637	3R_10227637_SNP [dm3] 3R_14401915_SNP [dm6]	A	T	1.518e^-4	0.679	INTRON cv-c
2R	13805110	2R_13805110_SNP [dm3] 2R_17917605_SNP [dm6]	C	T	1.518e^-4	0.679	INTRON Elk
3L	10491293	3L_10491293_SNP [dm3] 3L_10498193_SNP [dm6]	C	A	1.526e^-4	0.679	INTRON A2bp1
3R	24908321	3R_24908321_SNP [dm3] 3R_29082599_SNP [dm6]	G	A	1.527e^-4	0.679	INTRON CG11873	TF binding site mE1_TFBS_inv
2L	15046450	2L_15046450_SNP [dm3] 2L_15046450_SNP [dm6]	C	T	1.533e^-4	0.679	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
X	18171673	X_18171673_DEL [dm3] X_18277640_DEL [dm6]	TT	T	1.537e^-4	0.679	INTRON upd3
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	1.538e^-4	0.679	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18225739	3R_18225739_SNP [dm3] 3R_22400017_SNP [dm6]	T	C	1.540e^-4	0.679	INTERGENIC
3R	25260037	3R_25260037_SNP [dm3] 3R_29434315_SNP [dm6]	C	T	1.546e^-4	0.679	INTRON Ptp99A
2L	223073	2L_223073_SNP [dm3] 2L_223073_SNP [dm6]	A	G	1.546e^-4	0.679	UPSTREAM CR44222 INTRON kis	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	18748554	2R_18748554_SNP [dm3] 2R_22861031_SNP [dm6]	A	T	1.550e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23266448	3R_23266448_SNP [dm3] 3R_27440726_SNP [dm6]	A	C	1.555e^-4	0.679	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12266185	2L_12266185_SNP [dm3] 2L_12266185_SNP [dm6]	C	A	1.556e^-4	0.679	INTRON aret
3R	25656294	3R_25656294_SNP [dm3] 3R_29830572_SNP [dm6]	T	C	1.564e^-4	0.679	INTRON Atg16
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	1.576e^-4	0.679	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
2L	7063937	2L_7063937_SNP [dm3] 2L_7063937_SNP [dm6]	A	C	1.578e^-4	0.679	UPSTREAM Sem1 DOWNSTREAM Nuf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	13297363	3L_13297363_SNP [dm3] 3L_13304263_SNP [dm6]	C	G	1.579e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
3R	26097712	3R_26097712_SNP [dm3] 3R_30271990_SNP [dm6]	C	T	1.580e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13805115	2R_13805115_SNP [dm3] 2R_17917610_SNP [dm6]	A	T	1.581e^-4	0.679	INTRON Elk
X	2595180	X_2595180_SNP [dm3] X_2701147_SNP [dm6]	G	A	1.592e^-4	0.679	UTR_3_PRIME Csat DOWNSTREAM CG2662
3L	10693440	3L_10693440_SNP [dm3] 3L_10700340_SNP [dm6]	T	G	1.596e^-4	0.679	INTERGENIC
3R	9786893	3R_9786893_SNP [dm3] 3R_13961171_SNP [dm6]	A	G	1.597e^-4	0.679	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21839966	X_21839966_SNP [dm3] X_22438131_SNP [dm6]	A	T	1.598e^-4	0.679	INTERGENIC	transposable element FlyBase
3R	25826206	3R_25826206_SNP [dm3] 3R_30000484_SNP [dm6]	C	G	1.600e^-4	0.679	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	4989157	3R_4989157_SNP [dm3] 3R_9163435_SNP [dm6]	C	A	1.600e^-4	0.679	INTRON pum	TF binding site mE1_TFBS_zfh1
2L	4403493	2L_4403493_SNP [dm3] 2L_4403493_SNP [dm6]	T	C	1.604e^-4	0.679	DOWNSTREAM CG15431 & 1 other INTRON Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12009084	X_12009084_SNP [dm3] X_12115051_SNP [dm6]	T	C	1.606e^-4	0.679	INTRON CR43960 & 1 other
X	17237278	X_17237278_SNP [dm3] X_17343245_SNP [dm6]	A	T	1.606e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3614164	3L_3614164_SNP [dm3] 3L_3614164_SNP [dm6]	T	C	1.609e^-4	0.679	SYNONYMOUS_CODING CG10359
2L	8083352	2L_8083352_SNP [dm3] 2L_8083352_SNP [dm6]	T	C	1.610e^-4	0.679	UPSTREAM Bsg & 1 other DOWNSTREAM CR45257 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	12005748	2R_12005748_SNP [dm3] 2R_16118243_SNP [dm6]	C	G	1.621e^-4	0.679	NON_SYNONYMOUS_CODING Jhedup	TF binding site BDTNP1_TFBS_twi mE1_TFBS_ftz_f1 mE1_TFBS_HSA mE1_TFBS_sens
2R	5606440	2R_5606440_SNP [dm3] 2R_9718935_SNP [dm6]	G	A	1.622e^-4	0.679	UTR_3_PRIME sqa INTRON sqa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7987463	X_7987463_SNP [dm3] X_8093430_SNP [dm6]	A	G	1.622e^-4	0.679	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8113408	2R_8113408_SNP [dm3] 2R_12225903_SNP [dm6]	G	T	1.623e^-4	0.679	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	20861599	3L_20861599_SNP [dm3] 3L_20868499_SNP [dm6]	C	T	1.624e^-4	0.679	INTRON CG32432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23475233	3R_23475233_SNP [dm3] 3R_27649511_SNP [dm6]	C	T	1.628e^-4	0.679	UTR_5_PRIME tau INTRON tau
3R	1514354	3R_1514354_SNP [dm3] 3R_5688632_SNP [dm6]	G	T	1.632e^-4	0.679	INTRON plx
3L	14770089	3L_14770089_SNP [dm3] 3L_14776989_SNP [dm6]	T	C	1.636e^-4	0.679	UPSTREAM mop INTRON bmm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1735774	2L_1735774_SNP [dm3] 2L_1735774_SNP [dm6]	C	T	1.637e^-4	0.679	INTRON CG17646
2R	18748653	2R_18748653_SNP [dm3] 2R_22861130_SNP [dm6]	C	A	1.637e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22400416	3L_22400416_INS [dm3] 3L_22407316_INS [dm6]	G	GG	1.637e^-4	0.679	UTR_5_PRIME Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6050153	2L_6050153_SNP [dm3] 2L_6050153_SNP [dm6]	C	T	1.639e^-4	0.679	SYNONYMOUS_CODING CG12393 UPSTREAM CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2R	16177979	2R_16177979_SNP [dm3] 2R_20290474_SNP [dm6]	C	T	1.649e^-4	0.679	UTR_3_PRIME CkIIbeta2 INTRON Cpr56F
3L	1930643	3L_1930643_INS [dm3] 3L_1930643_INS [dm6]	A	ACATA	1.655e^-4	0.679	INTRON Dbx
3L	13297457	3L_13297457_SNP [dm3] 3L_13304357_SNP [dm6]	C	A	1.655e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	1.664e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17432759	2R_17432759_SNP [dm3] 2R_21545254_SNP [dm6]	C	A	1.664e^-4	0.679	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16549032	3R_16549032_SNP [dm3] 3R_20723310_SNP [dm6]	T	C	1.664e^-4	0.679	INTERGENIC
3R	7872656	3R_7872656_SNP [dm3] 3R_12046934_SNP [dm6]	A	G	1.668e^-4	0.679	INTERGENIC
3R	23266450	3R_23266450_SNP [dm3] 3R_27440728_SNP [dm6]	G	C	1.674e^-4	0.679	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6939567	3L_6939567_SNP [dm3] 3L_6946467_SNP [dm6]	G	A	1.679e^-4	0.679	INTRON tow
2R	8109757	2R_8109757_SNP [dm3] 2R_12222252_SNP [dm6]	A	C	1.682e^-4	0.679	INTERGENIC
3L	8026530	3L_8026530_SNP [dm3] 3L_8033430_SNP [dm6]	C	G	1.684e^-4	0.679	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	1903516	2L_1903516_SNP [dm3] 2L_1903516_SNP [dm6]	T	A	1.685e^-4	0.679	INTRON CG7337
2R	14423411	2R_14423411_DEL [dm3] 2R_18535906_DEL [dm6]	AACAAGAGTGGC...	A	1.691e^-4	0.679	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22713939	3R_22713939_SNP [dm3] 3R_26888217_SNP [dm6]	T	A	1.693e^-4	0.679	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7578643	2L_7578643_SNP [dm3] 2L_7578643_SNP [dm6]	T	C	1.693e^-4	0.679	UTR_5_PRIME RapGAP1
X	18126210	X_18126210_SNP [dm3] X_18232177_SNP [dm6]	C	T	1.695e^-4	0.679	INTERGENIC
X	18131185	X_18131185_SNP [dm3] X_18237152_SNP [dm6]	T	G	1.695e^-4	0.679	INTERGENIC
X	18131200	X_18131200_SNP [dm3] X_18237167_SNP [dm6]	G	C	1.695e^-4	0.679	INTERGENIC
3R	24908372	3R_24908372_SNP [dm3] 3R_29082650_SNP [dm6]	C	T	1.707e^-4	0.679	INTRON CG11873	TF binding site mE1_TFBS_inv
2R	18969456	2R_18969456_SNP [dm3] 2R_23081933_SNP [dm6]	C	T	1.710e^-4	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
X	12202203	X_12202203_SNP [dm3] X_12308170_SNP [dm6]	T	C	1.711e^-4	0.679	INTRON Ten-a
3R	8366414	3R_8366414_SNP [dm3] 3R_12540692_SNP [dm6]	C	A	1.711e^-4	0.679	INTRON Octbeta3R
3L	10712937	3L_10712937_SNP [dm3] 3L_10719837_SNP [dm6]	T	A	1.712e^-4	0.679	INTERGENIC
3R	25085669	3R_25085669_SNP [dm3] 3R_29259947_SNP [dm6]	A	G	1.714e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18222959	X_18222959_SNP [dm3] X_18328926_SNP [dm6]	C	G	1.724e^-4	0.679	INTRON CG6123
3R	23320986	3R_23320986_SNP [dm3] 3R_27495264_SNP [dm6]	A	T	1.733e^-4	0.679	INTERGENIC
X	17460606	X_17460606_SNP [dm3] X_17566573_SNP [dm6]	C	G	1.733e^-4	0.679	UTR_3_PRIME ppk23 DOWNSTREAM ppk23
2R	20158093	2R_20158093_SNP [dm3] 2R_24270570_SNP [dm6]	C	T	1.734e^-4	0.679	INTERGENIC
2L	1638795	2L_1638795_SNP [dm3] 2L_1638795_SNP [dm6]	T	C	1.746e^-4	0.679	INTERGENIC
2L	2845604	2L_2845604_SNP [dm3] 2L_2845604_SNP [dm6]	C	T	1.747e^-4	0.679	SYNONYMOUS_CODING CG18557 DOWNSTREAM CG3117
2R	13183128	2R_13183128_SNP [dm3] 2R_17295623_SNP [dm6]	T	C	1.750e^-4	0.679	INTRON mbl
3R	23441354	3R_23441354_SNP [dm3] 3R_27615632_SNP [dm6]	G	A	1.754e^-4	0.679	INTRON Tusp
2L	5921028	2L_5921028_SNP [dm3] 2L_5921028_SNP [dm6]	C	T	1.755e^-4	0.679	INTRON bchs
3R	23318856	3R_23318856_SNP [dm3] 3R_27493134_SNP [dm6]	C	G	1.769e^-4	0.679	INTERGENIC
3R	6552867	3R_6552867_SNP [dm3] 3R_10727145_SNP [dm6]	G	C	1.770e^-4	0.679	INTERGENIC
3R	9773883	3R_9773883_SNP [dm3] 3R_13948161_SNP [dm6]	C	G	1.774e^-4	0.679	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2278284	3L_2278284_SNP [dm3] 3L_2278284_SNP [dm6]	A	C	1.776e^-4	0.679	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25659971	3R_25659971_SNP [dm3] 3R_29834249_SNP [dm6]	T	C	1.782e^-4	0.679	UPSTREAM Atg16 INTRON Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6832406	2R_6832406_SNP [dm3] 2R_10944901_SNP [dm6]	C	G	1.782e^-4	0.679	INTERGENIC
X	17236701	X_17236701_SNP [dm3] X_17342668_SNP [dm6]	G	A	1.790e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2842952	2L_2842952_SNP [dm3] 2L_2842952_SNP [dm6]	C	G	1.792e^-4	0.679	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
2L	1903435	2L_1903435_SNP [dm3] 2L_1903435_SNP [dm6]	C	A	1.798e^-4	0.679	INTRON CG7337
3R	23544971	3R_23544971_SNP [dm3] 3R_27719249_SNP [dm6]	C	T	1.808e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18130849	X_18130849_SNP [dm3] X_18236816_SNP [dm6]	A	G	1.809e^-4	0.679	INTERGENIC
2L	4421816	2L_4421816_SNP [dm3] 2L_4421816_SNP [dm6]	T	G	1.810e^-4	0.679	INTRON CG15431
X	16416525	X_16416525_SNP [dm3] X_16522492_SNP [dm6]	A	G	1.813e^-4	0.679	DOWNSTREAM Cnx14D INTRON para
X	12733458	X_12733458_SNP [dm3] X_12839425_SNP [dm6]	T	C	1.817e^-4	0.679	INTRON Pde9
3R	3860843	3R_3860843_SNP [dm3] 3R_8035121_SNP [dm6]	C	T	1.823e^-4	0.679	SYNONYMOUS_CODING unc-45	TF binding site mE1_TFBS_sens
X	10136531	X_10136531_SNP [dm3] X_10242498_SNP [dm6]	A	C	1.828e^-4	0.679	INTRON Hk
X	17299219	X_17299219_SNP [dm3] X_17405186_SNP [dm6]	G	A	1.829e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4998137	3R_4998137_SNP [dm3] 3R_9172415_SNP [dm6]	T	A	1.830e^-4	0.679	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8115272	2R_8115272_SNP [dm3] 2R_12227767_SNP [dm6]	T	C	1.832e^-4	0.679	UPSTREAM CG8854 INTRON CG8854
3L	6798954	3L_6798954_SNP [dm3] 3L_6805854_SNP [dm6]	C	A	1.838e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs
3R	16185866	3R_16185866_SNP [dm3] 3R_20360144_SNP [dm6]	A	T	1.844e^-4	0.679	UPSTREAM MtnC EXON CR45023
2L	2845979	2L_2845979_SNP [dm3] 2L_2845979_SNP [dm6]	G	A	1.845e^-4	0.679	UTR_3_PRIME CG3117 UPSTREAM CG18557
X	18132004	X_18132004_SNP [dm3] X_18237971_SNP [dm6]	G	A	1.848e^-4	0.679	INTERGENIC
X	2455652	X_2455652_SNP [dm3] X_2561619_SNP [dm6]	A	G	1.859e^-4	0.679	INTRON Pdfr
2R	6578545	2R_6578545_SNP [dm3] 2R_10691040_SNP [dm6]	T	G	1.860e^-4	0.679	INTRON stan
2L	2837461	2L_2837461_SNP [dm3] 2L_2837461_SNP [dm6]	C	G	1.860e^-4	0.679	NON_SYNONYMOUS_CODING CG3119 UPSTREAM Cpr23B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6278651	2L_6278651_INS [dm3] 2L_6278651_INS [dm6]	T	TTCT	1.869e^-4	0.679	INTRON Ddr
2R	13049125	2R_13049125_SNP [dm3] 2R_17161620_SNP [dm6]	T	C	1.890e^-4	0.679	UPSTREAM CG30457 INTERGENIC
3L	16213284	3L_16213284_SNP [dm3] 3L_16220184_SNP [dm6]	A	G	1.892e^-4	0.679	INTERGENIC
2R	14749690	2R_14749690_SNP [dm3] 2R_18862185_SNP [dm6]	C	T	1.893e^-4	0.679	UPSTREAM CG43069 & 1 other INTERGENIC
3R	4765370	3R_4765370_SNP [dm3] 3R_8939648_SNP [dm6]	C	A	1.896e^-4	0.679	INTRON skap	TF binding site BDTNP1_TFBS_dl
3L	20569246	3L_20569246_SNP [dm3] 3L_20576146_SNP [dm6]	A	T	1.896e^-4	0.679	INTERGENIC
3L	605160	3L_605160_SNP [dm3] 3L_605160_SNP [dm6]	G	A	1.896e^-4	0.679	DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17285289	2R_17285289_SNP [dm3] 2R_21397784_SNP [dm6]	T	G	1.902e^-4	0.679	INTRON Sdc
3L	13465951	3L_13465951_SNP [dm3] 3L_13472851_SNP [dm6]	T	C	1.905e^-4	0.679	INTRON CG10089
2L	2531940	2L_2531940_SNP [dm3] 2L_2531940_SNP [dm6]	A	T	1.908e^-4	0.679	INTERGENIC
2R	6148258	2R_6148258_SNP [dm3] 2R_10260753_SNP [dm6]	A	G	1.910e^-4	0.679	DOWNSTREAM CR30009 INTRON CG12911
3L	16866597	3L_16866597_SNP [dm3] 3L_16873497_SNP [dm6]	T	C	1.914e^-4	0.679	INTRON Lmpt
2R	14431387	2R_14431387_SNP [dm3] 2R_18543882_SNP [dm6]	C	T	1.920e^-4	0.679	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
X	19299343	X_19299343_SNP [dm3] X_19405310_SNP [dm6]	G	A	1.922e^-4	0.679	INTRON kek5
3L	8820241	3L_8820241_SNP [dm3] 3L_8827141_SNP [dm6]	A	T	1.929e^-4	0.679	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18225735	3R_18225735_SNP [dm3] 3R_22400013_SNP [dm6]	G	A	1.930e^-4	0.679	INTERGENIC
3R	26063227	3R_26063227_SNP [dm3] 3R_30237505_SNP [dm6]	T	A	1.932e^-4	0.679	INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14351332	3R_14351332_SNP [dm3] 3R_18525610_SNP [dm6]	A	G	1.939e^-4	0.679	INTRON fru
2R	20489988	2R_20489988_SNP [dm3] 2R_24602465_SNP [dm6]	G	A	1.944e^-4	0.679	UPSTREAM CG3565 DOWNSTREAM CG3548 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20508850	2R_20508850_SNP [dm3] 2R_24621327_SNP [dm6]	C	T	1.955e^-4	0.679	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	13183428	2R_13183428_SNP [dm3] 2R_17295923_SNP [dm6]	A	G	1.961e^-4	0.679	INTRON mbl
2R	13183429	2R_13183429_SNP [dm3] 2R_17295924_SNP [dm6]	A	G	1.961e^-4	0.679	INTRON mbl
2L	11667556	2L_11667556_SNP [dm3] 2L_11667556_SNP [dm6]	C	G	1.963e^-4	0.679	INTERGENIC
3L	22208194	3L_22208194_SNP [dm3] 3L_22215094_SNP [dm6]	T	G	1.976e^-4	0.679	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13183160	2R_13183160_SNP [dm3] 2R_17295655_SNP [dm6]	T	A	1.977e^-4	0.679	INTRON mbl
3R	15589014	3R_15589014_SNP [dm3] 3R_19763292_SNP [dm6]	A	G	1.979e^-4	0.679	INTRON GluClalpha
2R	8871496	2R_8871496_SNP [dm3] 2R_12983991_SNP [dm6]	G	T	1.979e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18136970	X_18136970_SNP [dm3] X_18242937_SNP [dm6]	G	A	1.983e^-4	0.679	SYNONYMOUS_CODING upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	16983989	3L_16983989_SNP [dm3] 3L_16990889_SNP [dm6]	G	T	1.989e^-4	0.679	INTRON Exn	TF binding site mE1_TFBS_chinmo
X	12009087	X_12009087_SNP [dm3] X_12115054_SNP [dm6]	T	G	1.991e^-4	0.679	INTRON CR43960 & 1 other
3R	6553330	3R_6553330_SNP [dm3] 3R_10727608_SNP [dm6]	A	G	1.992e^-4	0.679	INTERGENIC
3R	6553343	3R_6553343_SNP [dm3] 3R_10727621_SNP [dm6]	G	C	1.992e^-4	0.679	INTERGENIC
X	4561087	X_4561087_SNP [dm3] X_4667054_SNP [dm6]	C	G	1.993e^-4	0.679	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
X	18122759	X_18122759_SNP [dm3] X_18228726_SNP [dm6]	G	T	1.999e^-4	0.679	UPSTREAM CR45622 INTERGENIC
X	19602304	X_19602304_SNP [dm3] X_19708271_SNP [dm6]	G	T	2.001e^-4	0.679	SYNONYMOUS_CODING meso18E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	20259065	3R_20259065_SNP [dm3] 3R_24433343_SNP [dm6]	T	C	2.005e^-4	0.679	INTRON nAChRalpha1
3R	1742137	3R_1742137_SNP [dm3] 3R_5916415_SNP [dm6]	A	G	2.006e^-4	0.679	INTRON CG34113
3L	5001657	3L_5001657_SNP [dm3] 3L_5001657_SNP [dm6]	T	C	2.007e^-4	0.679	INTRON Con
X	18737171	X_18737171_SNP [dm3] X_18843138_SNP [dm6]	C	A	2.011e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	8112658	2R_8112658_SNP [dm3] 2R_12225153_SNP [dm6]	G	A	2.011e^-4	0.679	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
2R	20378008	2R_20378008_SNP [dm3] 2R_24490485_SNP [dm6]	T	A	2.011e^-4	0.679	UTR_3_PRIME CG13579
X	19873950	X_19873950_SNP [dm3] X_19979917_SNP [dm6]	G	A	2.013e^-4	0.679	INTERGENIC
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	2.015e^-4	0.679	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
X	14242907	X_14242907_SNP [dm3] X_14348874_SNP [dm6]	C	G	2.022e^-4	0.679	INTRON dpr8
2L	13949449	2L_13949449_SNP [dm3] 2L_13949449_SNP [dm6]	C	G	2.036e^-4	0.679	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	2.042e^-4	0.679	INTRON Oamb
2R	18763272	2R_18763272_SNP [dm3] 2R_22875749_SNP [dm6]	C	G	2.043e^-4	0.679	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
2L	4214337	2L_4214337_SNP [dm3] 2L_4214337_SNP [dm6]	A	T	2.047e^-4	0.679	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10250419	3L_10250419_SNP [dm3] 3L_10257319_SNP [dm6]	A	G	2.052e^-4	0.679	INTERGENIC
2L	1285646	2L_1285646_SNP [dm3] 2L_1285646_SNP [dm6]	C	T	2.053e^-4	0.679	INTRON robo3
3R	16508431	3R_16508431_SNP [dm3] 3R_20682709_SNP [dm6]	A	G	2.054e^-4	0.679	INTERGENIC
3R	23462661	3R_23462661_SNP [dm3] 3R_27636939_SNP [dm6]	C	T	2.061e^-4	0.679	UTR_5_PRIME Mtl UPSTREAM CG5611 INTRON Mtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11744146	X_11744146_SNP [dm3] X_11850113_SNP [dm6]	G	T	2.061e^-4	0.679	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC
2R	6541409	2R_6541409_SNP [dm3] 2R_10653904_SNP [dm6]	G	A	2.070e^-4	0.679	INTERGENIC
3L	11652985	3L_11652985_SNP [dm3] 3L_11659885_SNP [dm6]	C	A	2.074e^-4	0.679	INTRON CG32085
2L	18932869	2L_18932869_INS [dm3] 2L_18932869_INS [dm6]	T	TT	2.080e^-4	0.679	INTRON ssp3
3R	24911307	3R_24911307_SNP [dm3] 3R_29085585_SNP [dm6]	T	A	2.080e^-4	0.679	INTRON CG11873
X	4808593	X_4808593_SNP [dm3] X_4914560_SNP [dm6]	G	A	2.083e^-4	0.679	UTR_3_PRIME CG32772 DOWNSTREAM CG4041
2L	7572507	2L_7572507_SNP [dm3] 2L_7572507_SNP [dm6]	A	G	2.083e^-4	0.679	INTRON RapGAP1
X	17236621	X_17236621_INS [dm3] X_17342588_INS [dm6]	T	TT	2.092e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10481445	2L_10481445_SNP [dm3] 2L_10481445_SNP [dm6]	T	C	2.099e^-4	0.679	SYNONYMOUS_CODING RluA-2
3L	13077739	3L_13077739_SNP [dm3] 3L_13084639_SNP [dm6]	G	T	2.101e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20508964	2R_20508964_SNP [dm3] 2R_24621441_SNP [dm6]	C	A	2.111e^-4	0.679	NON_SYNONYMOUS_CODING CG13594	TF binding site mE1_TFBS_chinmo
3L	605127	3L_605127_SNP [dm3] 3L_605127_SNP [dm6]	C	T	2.119e^-4	0.679	DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8349999	2R_8349999_SNP [dm3] 2R_12462494_SNP [dm6]	T	C	2.123e^-4	0.679	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	176875	2L_176875_SNP [dm3] 2L_176875_SNP [dm6]	G	A	2.130e^-4	0.679	INTRON spen
3R	25906489	3R_25906489_SNP [dm3] 3R_30080767_SNP [dm6]	G	T	2.130e^-4	0.679	INTRON sima
X	11856432	X_11856432_SNP [dm3] X_11962399_SNP [dm6]	G	A	2.132e^-4	0.679	INTRON cac
3L	6832424	3L_6832424_SNP [dm3] 3L_6839324_SNP [dm6]	G	T	2.147e^-4	0.679	INTERGENIC
2R	18249857	2R_18249857_SNP [dm3] 2R_22362352_SNP [dm6]	T	G	2.152e^-4	0.679	INTRON Liprin-gamma
2R	13183205	2R_13183205_INS [dm3] 2R_17295700_INS [dm6]	T	TTCATT	2.157e^-4	0.679	INTRON mbl
X	17236713	X_17236713_SNP [dm3] X_17342680_SNP [dm6]	G	T	2.159e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23470717	3R_23470717_SNP [dm3] 3R_27644995_SNP [dm6]	A	G	2.169e^-4	0.679	INTRON tau	TF binding site BDTNP1_TFBS_prd
3L	17098153	3L_17098153_SNP [dm3] 3L_17105053_SNP [dm6]	A	C	2.170e^-4	0.679	INTRON Rbp6
2R	4417148	2R_4417148_SNP [dm3] 2R_8529643_SNP [dm6]	G	A	2.172e^-4	0.679	INTRON mtt
2L	10241126	2L_10241126_SNP [dm3] 2L_10241126_SNP [dm6]	C	T	2.175e^-4	0.679	SPLICE_SITE_REGION me31B INTRON me31B	TF binding site mE1_TFBS_sens
3L	16291625	3L_16291625_SNP [dm3] 3L_16298525_SNP [dm6]	C	T	2.176e^-4	0.679	INTERGENIC
X	16516264	X_16516264_SNP [dm3] X_16622231_SNP [dm6]	G	A	2.181e^-4	0.679	UPSTREAM CG9782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25083337	3R_25083337_SNP [dm3] 3R_29257615_SNP [dm6]	A	C	2.182e^-4	0.679	DOWNSTREAM CG45544 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	23442945	3R_23442945_SNP [dm3] 3R_27617223_SNP [dm6]	C	T	2.185e^-4	0.679	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
3R	23315662	3R_23315662_SNP [dm3] 3R_27489940_SNP [dm6]	A	C	2.188e^-4	0.679	UTR_3_PRIME Gr98a
3R	1518866	3R_1518866_SNP [dm3] 3R_5693144_SNP [dm6]	C	T	2.188e^-4	0.679	NON_SYNONYMOUS_CODING CG2104 INTRON plx
X	18737023	X_18737023_SNP [dm3] X_18842990_SNP [dm6]	T	G	2.190e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	16425634	2R_16425634_SNP [dm3] 2R_20538129_SNP [dm6]	T	C	2.192e^-4	0.679	SYNONYMOUS_CODING CG13423 DOWNSTREAM CG13427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	16069318	3R_16069318_SNP [dm3] 3R_20243596_SNP [dm6]	T	C	2.195e^-4	0.679	INTRON Nlg4
2R	16407679	2R_16407679_SNP [dm3] 2R_20520174_SNP [dm6]	G	A	2.196e^-4	0.679	INTERGENIC
2R	15780548	2R_15780548_SNP [dm3] 2R_19893043_SNP [dm6]	T	A	2.196e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13046953	2R_13046953_INS [dm3] 2R_17159448_INS [dm6]	A	ACA	2.212e^-4	0.679	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2L	11670803	2L_11670803_SNP [dm3] 2L_11670803_SNP [dm6]	G	C	2.215e^-4	0.679	INTERGENIC
3R	25902068	3R_25902068_SNP [dm3] 3R_30076346_SNP [dm6]	T	C	2.221e^-4	0.679	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14351316	3R_14351316_SNP [dm3] 3R_18525594_SNP [dm6]	T	G	2.223e^-4	0.679	INTRON fru
3L	16252794	3L_16252794_SNP [dm3] 3L_16259694_SNP [dm6]	C	T	2.229e^-4	0.679	UTR_5_PRIME CG13053 UPSTREAM CG13053
3L	21035130	3L_21035130_SNP [dm3] 3L_21042030_SNP [dm6]	A	G	2.233e^-4	0.679	INTRON siz
2L	5704770	2L_5704770_SNP [dm3] 2L_5704770_SNP [dm6]	T	G	2.236e^-4	0.679	INTERGENIC
3R	6836534	3R_6836534_DEL [dm3] 3R_11010812_DEL [dm6]	TGTCAACTCCAAATTTACCC...	T	2.237e^-4	0.679	INTRON CG34114
3R	6836565	3R_6836565_SNP [dm3] 3R_11010843_SNP [dm6]	A	T	2.237e^-4	0.679	INTRON CG34114
3R	18615938	3R_18615938_SNP [dm3] 3R_22790216_SNP [dm6]	G	C	2.239e^-4	0.679	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26097115	3R_26097115_SNP [dm3] 3R_30271393_SNP [dm6]	G	A	2.243e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	204384	2L_204384_SNP [dm3] 2L_204384_SNP [dm6]	C	T	2.244e^-4	0.679	SYNONYMOUS_CODING mRpL10 DOWNSTREAM spen & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10250417	3L_10250417_SNP [dm3] 3L_10257317_SNP [dm6]	A	G	2.248e^-4	0.679	INTERGENIC
2L	8574719	2L_8574719_SNP [dm3] 2L_8574719_SNP [dm6]	T	C	2.248e^-4	0.679	INTRON Sema-1a
X	18124687	X_18124687_SNP [dm3] X_18230654_SNP [dm6]	A	G	2.253e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23223689	3R_23223689_SNP [dm3] 3R_27397967_SNP [dm6]	G	A	2.253e^-4	0.679	INTRON side
3L	10250410	3L_10250410_SNP [dm3] 3L_10257310_SNP [dm6]	C	A	2.262e^-4	0.679	INTERGENIC
3L	4217110	3L_4217110_SNP [dm3] 3L_4217110_SNP [dm6]	C	T	2.263e^-4	0.679	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
X	18737260	X_18737260_SNP [dm3] X_18843227_SNP [dm6]	A	C	2.276e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	2595105	X_2595105_SNP [dm3] X_2701072_SNP [dm6]	A	T	2.276e^-4	0.679	DOWNSTREAM Csat & 1 other INTERGENIC
3R	15321891	3R_15321891_SNP [dm3] 3R_19496169_SNP [dm6]	T	A	2.277e^-4	0.679	INTRON Dys
2L	13006610	2L_13006610_SNP [dm3] 2L_13006610_SNP [dm6]	C	T	2.279e^-4	0.679	SYNONYMOUS_CODING Tor
3R	23318978	3R_23318978_SNP [dm3] 3R_27493256_SNP [dm6]	A	G	2.281e^-4	0.679	INTERGENIC
2R	3735441	2R_3735441_SNP [dm3] 2R_7847936_SNP [dm6]	T	A	2.285e^-4	0.679	UPSTREAM Dgk INTRON Dgk
2L	1257179	2L_1257179_SNP [dm3] 2L_1257179_SNP [dm6]	G	T	2.288e^-4	0.679	INTRON robo3
3L	15690074	3L_15690074_SNP [dm3] 3L_15696974_SNP [dm6]	A	T	2.290e^-4	0.679	DOWNSTREAM comm2 INTERGENIC
2R	13724895	2R_13724895_SNP [dm3] 2R_17837390_SNP [dm6]	A	C	2.291e^-4	0.679	INTRON grh
3L	7072475	3L_7072475_SNP [dm3] 3L_7079375_SNP [dm6]	C	T	2.295e^-4	0.679	INTERGENIC
3L	4216971	3L_4216971_SNP [dm3] 3L_4216971_SNP [dm6]	C	T	2.296e^-4	0.679	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
3L	13297345	3L_13297345_SNP [dm3] 3L_13304245_SNP [dm6]	G	A	2.296e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
3R	15416656	3R_15416656_SNP [dm3] 3R_19590934_SNP [dm6]	T	A	2.303e^-4	0.679	INTRON Dys	TF binding site mE1_TFBS_cad
X	17236699	X_17236699_SNP [dm3] X_17342666_SNP [dm6]	A	T	2.307e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10137691	3R_10137691_SNP [dm3] 3R_14311969_SNP [dm6]	A	T	2.307e^-4	0.679	INTRON CG31321	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3876470	X_3876470_SNP [dm3] X_3982437_SNP [dm6]	T	A	2.314e^-4	0.679	INTERGENIC
3L	19561381	3L_19561381_SNP [dm3] 3L_19568281_SNP [dm6]	A	C	2.314e^-4	0.679	UTR_3_PRIME Shal DOWNSTREAM Shal
2R	13641564	2R_13641564_SNP [dm3] 2R_17754059_SNP [dm6]	G	A	2.316e^-4	0.679	SYNONYMOUS_CODING CG6385 DOWNSTREAM CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13430834	3L_13430834_SNP [dm3] 3L_13437734_SNP [dm6]	T	C	2.316e^-4	0.679	UPSTREAM CG10725 & 1 other INTERGENIC
3R	23386876	3R_23386876_SNP [dm3] 3R_27561154_SNP [dm6]	C	T	2.316e^-4	0.679	UPSTREAM snmRNA:157 DOWNSTREAM wdb INTRON CG5646
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	2.317e^-4	0.679	INTRON sr
X	19601727	X_19601727_INS [dm3] X_19707694_INS [dm6]	A	ACGTG	2.317e^-4	0.679	INTRON meso18E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8083332	2L_8083332_SNP [dm3] 2L_8083332_SNP [dm6]	T	C	2.321e^-4	0.679	UPSTREAM Bsg & 1 other DOWNSTREAM CR45257 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	13006652	2L_13006652_SNP [dm3] 2L_13006652_SNP [dm6]	C	T	2.325e^-4	0.679	SYNONYMOUS_CODING Tor
3R	9884266	3R_9884266_SNP [dm3] 3R_14058544_SNP [dm6]	A	G	2.334e^-4	0.679	INTRON foxo
3R	10224232	3R_10224232_SNP [dm3] 3R_14398510_SNP [dm6]	G	A	2.337e^-4	0.679	INTRON cv-c
3L	5874934	3L_5874934_SNP [dm3] 3L_5881834_SNP [dm6]	T	G	2.343e^-4	0.679	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13658988	3R_13658988_INS [dm3] 3R_17833266_INS [dm6]	T	TA	2.343e^-4	0.679	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3R	9773889	3R_9773889_SNP [dm3] 3R_13948167_SNP [dm6]	T	G	2.345e^-4	0.679	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18737224	X_18737224_SNP [dm3] X_18843191_SNP [dm6]	A	C	2.346e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	15673500	3L_15673500_SNP [dm3] 3L_15680400_SNP [dm6]	G	C	2.357e^-4	0.679	SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
2R	16177934	2R_16177934_SNP [dm3] 2R_20290429_SNP [dm6]	T	C	2.366e^-4	0.679	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
3R	22956316	3R_22956316_SNP [dm3] 3R_27130594_SNP [dm6]	G	A	2.369e^-4	0.679	INTRON CG6051
2L	15224192	2L_15224192_SNP [dm3] 2L_15224192_SNP [dm6]	A	C	2.373e^-4	0.679	INTERGENIC
X	19603283	X_19603283_DEL [dm3] X_19709250_DEL [dm6]	TGTGTT	T	2.374e^-4	0.679	INTRON meso18E
3R	22590083	3R_22590083_SNP [dm3] 3R_26764361_SNP [dm6]	T	C	2.376e^-4	0.679	INTERGENIC
3R	17877895	3R_17877895_SNP [dm3] 3R_22052173_SNP [dm6]	T	A	2.378e^-4	0.679	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	18222879	X_18222879_SNP [dm3] X_18328846_SNP [dm6]	A	C	2.380e^-4	0.679	INTRON CG6123
2L	5596275	2L_5596275_SNP [dm3] 2L_5596275_SNP [dm6]	A	G	2.386e^-4	0.679	UPSTREAM CG18266 INTERGENIC
X	19610749	X_19610749_SNP [dm3] X_19716716_SNP [dm6]	A	C	2.393e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9395811	3L_9395811_SNP [dm3] 3L_9402711_SNP [dm6]	G	T	2.396e^-4	0.679	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18969419	2R_18969419_SNP [dm3] 2R_23081896_SNP [dm6]	C	A	2.397e^-4	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969429	2R_18969429_SNP [dm3] 2R_23081906_SNP [dm6]	A	T	2.397e^-4	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969433	2R_18969433_INS [dm3] 2R_23081910_INS [dm6]	G	GTTAGTCTACATT...	2.397e^-4	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969451	2R_18969451_SNP [dm3] 2R_23081928_SNP [dm6]	G	T	2.397e^-4	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2L	6307088	2L_6307088_SNP [dm3] 2L_6307088_SNP [dm6]	A	T	2.398e^-4	0.679	INTRON Ddr
3R	9643003	3R_9643003_SNP [dm3] 3R_13817281_SNP [dm6]	G	A	2.401e^-4	0.679	DOWNSTREAM CR43642 INTERGENIC
3L	13297587	3L_13297587_SNP [dm3] 3L_13304487_SNP [dm6]	G	A	2.403e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
2L	16243653	2L_16243653_SNP [dm3] 2L_16243653_SNP [dm6]	A	G	2.405e^-4	0.679	NON_SYNONYMOUS_CODING CG42818
3R	25876117	3R_25876117_SNP [dm3] 3R_30050395_SNP [dm6]	C	T	2.406e^-4	0.679	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13920337	X_13920337_SNP [dm3] X_14026304_SNP [dm6]	T	C	2.407e^-4	0.679	UPSTREAM tRNA:S7:12Ed INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	13465957	3L_13465957_DEL [dm3] 3L_13472857_DEL [dm6]	CT	C	2.412e^-4	0.679	INTRON CG10089
2L	13294644	2L_13294644_SNP [dm3] 2L_13294644_SNP [dm6]	C	G	2.412e^-4	0.679	UPSTREAM CG31729 INTRON CG31729
3L	16147070	3L_16147070_SNP [dm3] 3L_16153970_SNP [dm6]	T	C	2.415e^-4	0.679	INTRON CG5151
3R	16667998	3R_16667998_SNP [dm3] 3R_20842276_SNP [dm6]	A	T	2.415e^-4	0.679	UTR_5_PRIME CG15695
3R	25260034	3R_25260034_SNP [dm3] 3R_29434312_SNP [dm6]	A	G	2.418e^-4	0.679	INTRON Ptp99A
3R	23315635	3R_23315635_MNP [dm3] 3R_27489913_MNP [dm6]	CATTT	ATGAG	2.423e^-4	0.679	UTR_3_PRIME Gr98a
3L	13849921	3L_13849921_SNP [dm3] 3L_13856821_SNP [dm6]	C	T	2.425e^-4	0.679	INTRON Hml
2L	13041030	2L_13041030_SNP [dm3] 2L_13041030_SNP [dm6]	C	T	2.426e^-4	0.679	INTRON CG9932
2L	4609946	2L_4609946_SNP [dm3] 2L_4609946_SNP [dm6]	G	A	2.428e^-4	0.679	INTRON dp
2L	10546549	2L_10546549_SNP [dm3] 2L_10546549_SNP [dm6]	A	G	2.428e^-4	0.679	INTRON Trim9
2L	4149272	2L_4149272_SNP [dm3] 2L_4149272_SNP [dm6]	G	A	2.431e^-4	0.679	UPSTREAM CG2955 INTERGENIC
3R	16547835	3R_16547835_SNP [dm3] 3R_20722113_SNP [dm6]	T	G	2.441e^-4	0.679	INTERGENIC
3R	26097224	3R_26097224_SNP [dm3] 3R_30271502_SNP [dm6]	T	A	2.442e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	1161320	3R_1161320_SNP [dm3] 3R_5335598_SNP [dm6]	G	A	2.443e^-4	0.679	INTRON mtd
3R	25865299	3R_25865299_SNP [dm3] 3R_30039577_SNP [dm6]	A	G	2.443e^-4	0.679	UPSTREAM Sry-beta & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	16705413	X_16705413_SNP [dm3] X_16811380_SNP [dm6]	T	A	2.450e^-4	0.679	UPSTREAM CG4829 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25260027	3R_25260027_SNP [dm3] 3R_29434305_SNP [dm6]	A	G	2.453e^-4	0.679	INTRON Ptp99A
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	2.453e^-4	0.679	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17639522	2L_17639522_SNP [dm3] 2L_17639522_SNP [dm6]	T	G	2.460e^-4	0.679	INTERGENIC
X	19602009	X_19602009_SNP [dm3] X_19707976_SNP [dm6]	T	C	2.466e^-4	0.679	INTRON meso18E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14424964	2R_14424964_SNP [dm3] 2R_18537459_SNP [dm6]	G	T	2.472e^-4	0.679	NON_SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20150795	X_20150795_SNP [dm3] X_20279768_SNP [dm6]	A	T	2.475e^-4	0.679	INTERGENIC
2R	13933748	2R_13933748_DEL [dm3] 2R_18046243_DEL [dm6]	ATGTAAGTGTTA...	A	2.480e^-4	0.679	DOWNSTREAM CG5767 INTERGENIC
3L	11649612	3L_11649612_SNP [dm3] 3L_11656512_SNP [dm6]	C	T	2.485e^-4	0.679	UPSTREAM mir-274 INTRON CG32085
3R	23315599	3R_23315599_SNP [dm3] 3R_27489877_SNP [dm6]	T	C	2.492e^-4	0.679	UTR_3_PRIME Gr98a
X	18061304	X_18061304_SNP [dm3] X_18167271_SNP [dm6]	A	G	2.492e^-4	0.679	INTRON Frq1
2R	8349996	2R_8349996_SNP [dm3] 2R_12462491_SNP [dm6]	T	G	2.494e^-4	0.679	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	2.495e^-4	0.679	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10226018	3R_10226018_SNP [dm3] 3R_14400296_SNP [dm6]	T	C	2.498e^-4	0.679	INTRON cv-c	TF binding site mE1_TFBS_Trl
X	17297230	X_17297230_SNP [dm3] X_17403197_SNP [dm6]	A	T	2.501e^-4	0.679	UTR_3_PRIME B-H1
3R	23242945	3R_23242945_SNP [dm3] 3R_27417223_SNP [dm6]	G	T	2.507e^-4	0.679	INTRON side
2R	18969416	2R_18969416_INS [dm3] 2R_23081893_INS [dm6]	G	GAGACACTTTAATTTTA...	2.511e^-4	0.679	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2L	16544566	2L_16544566_SNP [dm3] 2L_16544566_SNP [dm6]	A	C	2.511e^-4	0.679	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	11462373	2R_11462373_SNP [dm3] 2R_15574868_SNP [dm6]	G	C	2.516e^-4	0.679	UPSTREAM CG8204 INTERGENIC
2L	6234638	2L_6234638_SNP [dm3] 2L_6234638_SNP [dm6]	C	A	2.517e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18173326	X_18173326_SNP [dm3] X_18279293_SNP [dm6]	T	A	2.517e^-4	0.679	INTRON upd3	TF binding site mE1_TFBS_chinmo
3R	19914317	3R_19914317_SNP [dm3] 3R_24088595_SNP [dm6]	T	C	2.528e^-4	0.679	INTRON 4EHP
3R	12312719	3R_12312719_SNP [dm3] 3R_16486997_SNP [dm6]	A	G	2.529e^-4	0.679	SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad
X	2594261	X_2594261_SNP [dm3] X_2700228_SNP [dm6]	G	C	2.533e^-4	0.679	NON_SYNONYMOUS_CODING CG2662 DOWNSTREAM Csat	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10491483	3L_10491483_SNP [dm3] 3L_10498383_SNP [dm6]	G	A	2.539e^-4	0.679	INTRON A2bp1
2R	13641555	2R_13641555_SNP [dm3] 2R_17754050_SNP [dm6]	A	C	2.548e^-4	0.679	SYNONYMOUS_CODING CG6385 DOWNSTREAM CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16516267	X_16516267_SNP [dm3] X_16622234_SNP [dm6]	G	T	2.554e^-4	0.679	UPSTREAM CG9782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1148176	2L_1148176_SNP [dm3] 2L_1148176_SNP [dm6]	G	A	2.573e^-4	0.679	SYNONYMOUS_CODING CG4749 DOWNSTREAM MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10921255	3L_10921255_SNP [dm3] 3L_10928155_SNP [dm6]	T	C	2.582e^-4	0.679	INTERGENIC
2R	7959029	2R_7959029_INS [dm3] 2R_12071524_INS [dm6]	C	CA	2.584e^-4	0.679	INTRON CG8888
X	15320282	X_15320282_SNP [dm3] X_15426249_SNP [dm6]	T	A	2.585e^-4	0.679	INTRON Cngl
3R	23315641	3R_23315641_INS [dm3] 3R_27489919_INS [dm6]	A	ACAAATCTT	2.585e^-4	0.679	UTR_3_PRIME Gr98a
3R	23315645	3R_23315645_SNP [dm3] 3R_27489923_SNP [dm6]	A	T	2.585e^-4	0.679	UTR_3_PRIME Gr98a
X	18737157	X_18737157_SNP [dm3] X_18843124_SNP [dm6]	A	G	2.590e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	25767852	3R_25767852_SNP [dm3] 3R_29942130_SNP [dm6]	C	T	2.590e^-4	0.679	SYNONYMOUS_CODING CG15523
2L	9154834	2L_9154834_SNP [dm3] 2L_9154834_SNP [dm6]	G	A	2.591e^-4	0.679	INTRON CG32982
X	921614	X_921614_DEL [dm3] X_1027581_DEL [dm6]	CTC	C	2.593e^-4	0.679	UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12133036	X_12133036_SNP [dm3] X_12239003_SNP [dm6]	T	C	2.594e^-4	0.679	INTRON Ten-a
3L	9330797	3L_9330797_SNP [dm3] 3L_9337697_SNP [dm6]	A	G	2.594e^-4	0.679	INTRON PGRP-LA
2R	14439785	2R_14439785_SNP [dm3] 2R_18552280_SNP [dm6]	A	C	2.597e^-4	0.679	INTERGENIC
2L	604223	2L_604223_SNP [dm3] 2L_604223_SNP [dm6]	A	T	2.597e^-4	0.679	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
X	21887004	X_21887004_SNP [dm3] X_22485168_SNP [dm6]	G	T	2.598e^-4	0.679	INTRON Cp110
3L	1081039	3L_1081039_DEL [dm3] 3L_1081039_DEL [dm6]	TAT	T	2.600e^-4	0.679	INTRON bab1
3R	23477000	3R_23477000_SNP [dm3] 3R_27651278_SNP [dm6]	G	T	2.602e^-4	0.679	UTR_3_PRIME tau UPSTREAM tau INTRON tau
X	17303013	X_17303013_SNP [dm3] X_17408980_SNP [dm6]	T	C	2.605e^-4	0.679	INTERGENIC
X	17236646	X_17236646_SNP [dm3] X_17342613_SNP [dm6]	T	A	2.609e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13297381	3L_13297381_SNP [dm3] 3L_13304281_SNP [dm6]	T	A	2.610e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
2R	18748632	2R_18748632_SNP [dm3] 2R_22861109_SNP [dm6]	G	T	2.615e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17302967	X_17302967_SNP [dm3] X_17408934_SNP [dm6]	C	T	2.622e^-4	0.679	INTERGENIC
2L	13006850	2L_13006850_SNP [dm3] 2L_13006850_SNP [dm6]	G	A	2.628e^-4	0.679	SYNONYMOUS_CODING Tor
2L	14860441	2L_14860441_SNP [dm3] 2L_14860441_SNP [dm6]	C	T	2.635e^-4	0.679	INTERGENIC
X	15320242	X_15320242_SNP [dm3] X_15426209_SNP [dm6]	T	C	2.637e^-4	0.679	INTRON Cngl
3L	8582568	3L_8582568_SNP [dm3] 3L_8589468_SNP [dm6]	T	A	2.639e^-4	0.679	UPSTREAM CG43078 INTRON CG43078
2R	18183550	2R_18183550_SNP [dm3] 2R_22296045_SNP [dm6]	C	G	2.639e^-4	0.679	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2R	6696874	2R_6696874_SNP [dm3] 2R_10809369_SNP [dm6]	T	C	2.642e^-4	0.679	UPSTREAM CG12935 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18943254	2R_18943254_SNP [dm3] 2R_23055731_SNP [dm6]	C	T	2.642e^-4	0.679	INTRON CG44252
X	19136873	X_19136873_SNP [dm3] X_19242840_SNP [dm6]	G	A	2.645e^-4	0.679	UPSTREAM CG14196 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4881188	3R_4881188_SNP [dm3] 3R_9055466_SNP [dm6]	C	A	2.656e^-4	0.679	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22886219	3R_22886219_SNP [dm3] 3R_27060497_SNP [dm6]	T	C	2.657e^-4	0.679	NON_SYNONYMOUS_CODING Nep5
2L	1276673	2L_1276673_SNP [dm3] 2L_1276673_SNP [dm6]	G	A	2.658e^-4	0.679	INTRON robo3
2L	16243670	2L_16243670_SNP [dm3] 2L_16243670_SNP [dm6]	T	A	2.659e^-4	0.679	SYNONYMOUS_CODING CG42818
2R	17869720	2R_17869720_SNP [dm3] 2R_21982215_SNP [dm6]	G	A	2.661e^-4	0.679	INTERGENIC
2R	18200328	2R_18200328_DEL [dm3] 2R_22312823_DEL [dm6]	TCGCACTCGCCTTGTTTGTT...	T	2.663e^-4	0.679	UPSTREAM CR44758 & 1 other INTERGENIC
X	18634447	X_18634447_SNP [dm3] X_18740414_SNP [dm6]	G	A	2.671e^-4	0.679	UPSTREAM CG6873 INTERGENIC
2R	12267731	2R_12267731_SNP [dm3] 2R_16380226_SNP [dm6]	A	T	2.675e^-4	0.679	UPSTREAM CG43187 & 1 other DOWNSTREAM CR45316 INTERGENIC
3R	23315533	3R_23315533_SNP [dm3] 3R_27489811_SNP [dm6]	A	C	2.678e^-4	0.679	UTR_3_PRIME Gr98a
X	18737254	X_18737254_SNP [dm3] X_18843221_SNP [dm6]	T	C	2.686e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	18861034	2R_18861034_SNP [dm3] 2R_22973511_SNP [dm6]	A	G	2.690e^-4	0.679	INTERGENIC
3R	16667941	3R_16667941_SNP [dm3] 3R_20842219_SNP [dm6]	G	A	2.693e^-4	0.679	UTR_5_PRIME CG15695
X	12009076	X_12009076_SNP [dm3] X_12115043_SNP [dm6]	A	C	2.694e^-4	0.679	INTRON CR43960 & 1 other
2L	1666835	2L_1666835_SNP [dm3] 2L_1666835_SNP [dm6]	A	C	2.704e^-4	0.679	INTRON chinmo
2R	21015548	2R_21015548_SNP [dm3] 2R_25128025_SNP [dm6]	T	A	2.707e^-4	0.679	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15134124	X_15134124_SNP [dm3] X_15240091_SNP [dm6]	G	A	2.708e^-4	0.679	INTERGENIC
3R	23315616	3R_23315616_SNP [dm3] 3R_27489894_SNP [dm6]	A	T	2.717e^-4	0.679	UTR_3_PRIME Gr98a
2L	215060	2L_215060_SNP [dm3] 2L_215060_SNP [dm6]	C	T	2.722e^-4	0.679	SYNONYMOUS_CODING kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13179365	3R_13179365_SNP [dm3] 3R_17353643_SNP [dm6]	C	G	2.729e^-4	0.679	INTRON beat-IIa
X	18171539	X_18171539_SNP [dm3] X_18277506_SNP [dm6]	C	T	2.734e^-4	0.679	UTR_5_PRIME upd3
3R	24911317	3R_24911317_SNP [dm3] 3R_29085595_SNP [dm6]	C	G	2.735e^-4	0.679	INTRON CG11873
3R	10148600	3R_10148600_SNP [dm3] 3R_14322878_SNP [dm6]	G	T	2.738e^-4	0.679	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16292061	3L_16292061_SNP [dm3] 3L_16298961_SNP [dm6]	A	C	2.739e^-4	0.679	INTERGENIC
3R	20665025	3R_20665025_SNP [dm3] 3R_24839303_SNP [dm6]	C	T	2.744e^-4	0.679	INTRON sosie
3L	11549776	3L_11549776_SNP [dm3] 3L_11556676_SNP [dm6]	A	G	2.746e^-4	0.679	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6570537	3R_6570537_SNP [dm3] 3R_10744815_SNP [dm6]	A	G	2.750e^-4	0.679	INTRON TkR86C
2R	5605694	2R_5605694_SNP [dm3] 2R_9718189_SNP [dm6]	A	G	2.757e^-4	0.679	DOWNSTREAM sqa INTRON sqa	TF binding site BDTNP1_TFBS_twi
2L	10502991	2L_10502991_SNP [dm3] 2L_10502991_SNP [dm6]	T	G	2.760e^-4	0.679	INTRON Myo31DF
2L	4047994	2L_4047994_SNP [dm3] 2L_4047994_SNP [dm6]	T	A	2.762e^-4	0.679	INTRON ed	TF binding site mE1_TFBS_chinmo
X	17270957	X_17270957_SNP [dm3] X_17376924_SNP [dm6]	T	A	2.763e^-4	0.679	INTERGENIC
2L	4924210	2L_4924210_SNP [dm3] 2L_4924210_SNP [dm6]	A	C	2.765e^-4	0.679	INTRON hoe1
3R	22574064	3R_22574064_SNP [dm3] 3R_26748342_SNP [dm6]	G	A	2.776e^-4	0.679	INTERGENIC
2R	14645042	2R_14645042_SNP [dm3] 2R_18757537_SNP [dm6]	A	T	2.782e^-4	0.679	DOWNSTREAM Jabba & 1 other INTRON Jabba
2R	6360256	2R_6360256_SNP [dm3] 2R_10472751_SNP [dm6]	G	T	2.783e^-4	0.679	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_sens
3L	3801609	3L_3801609_DEL [dm3] 3L_3801609_DEL [dm6]	TG	T	2.784e^-4	0.679	UPSTREAM CG32264 INTRON CG32264
2L	12266179	2L_12266179_SNP [dm3] 2L_12266179_SNP [dm6]	A	G	2.784e^-4	0.679	INTRON aret
X	18737186	X_18737186_SNP [dm3] X_18843153_SNP [dm6]	A	G	2.786e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18737240	X_18737240_SNP [dm3] X_18843207_SNP [dm6]	A	T	2.786e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26098397	3R_26098397_SNP [dm3] 3R_30272675_SNP [dm6]	G	A	2.799e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1482341	2L_1482341_SNP [dm3] 2L_1482341_SNP [dm6]	C	A	2.810e^-4	0.679	INTERGENIC
3L	16216056	3L_16216056_SNP [dm3] 3L_16222956_SNP [dm6]	G	C	2.815e^-4	0.679	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5303048	3L_5303048_SNP [dm3] 3L_5309948_SNP [dm6]	C	T	2.824e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14422964	2R_14422964_SNP [dm3] 2R_18535459_SNP [dm6]	T	G	2.824e^-4	0.679	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
3L	6818665	3L_6818665_DEL [dm3] 3L_6825565_DEL [dm6]	TTT	T	2.829e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs
3R	23477165	3R_23477165_SNP [dm3] 3R_27651443_SNP [dm6]	A	G	2.834e^-4	0.679	UTR_3_PRIME tau UPSTREAM tau INTRON tau
3L	10835617	3L_10835617_SNP [dm3] 3L_10842517_SNP [dm6]	T	G	2.835e^-4	0.679	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	6342926	2L_6342926_SNP [dm3] 2L_6342926_SNP [dm6]	C	T	2.837e^-4	0.679	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv mE1_TFBS_sens
2L	14495973	2L_14495973_SNP [dm3] 2L_14495973_SNP [dm6]	A	C	2.846e^-4	0.679	DOWNSTREAM tRNA:P:35Bd INTERGENIC
2L	14857813	2L_14857813_SNP [dm3] 2L_14857813_SNP [dm6]	T	A	2.846e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	16544435	2L_16544435_SNP [dm3] 2L_16544435_SNP [dm6]	T	A	2.855e^-4	0.679	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10310380	3L_10310380_DEL [dm3] 3L_10317280_DEL [dm6]	AA	A	2.855e^-4	0.679	INTERGENIC
3L	4029085	3L_4029085_SNP [dm3] 3L_4029085_SNP [dm6]	T	C	2.858e^-4	0.679	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c DOWNSTREAM Gr64a
2R	13642104	2R_13642104_SNP [dm3] 2R_17754599_SNP [dm6]	T	A	2.858e^-4	0.679	SPLICE_SITE_REGION CG6385 INTRON CG6385	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	18224084	X_18224084_SNP [dm3] X_18330051_SNP [dm6]	G	A	2.859e^-4	0.679	INTRON CG6123
3R	23442946	3R_23442946_SNP [dm3] 3R_27617224_SNP [dm6]	A	C	2.861e^-4	0.679	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2L	6343775	2L_6343775_SNP [dm3] 2L_6343775_SNP [dm6]	T	C	2.868e^-4	0.679	UTR_5_PRIME Cpr INTRON Cpr	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	18124680	X_18124680_SNP [dm3] X_18230647_SNP [dm6]	A	T	2.875e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4031832	2R_4031832_DEL [dm3] 2R_8144327_DEL [dm6]	GTATCA	G	2.876e^-4	0.679	INTRON Lpin
3R	23223723	3R_23223723_SNP [dm3] 3R_27398001_SNP [dm6]	T	A	2.879e^-4	0.679	INTRON side
2L	3872162	2L_3872162_DEL [dm3] 2L_3872162_DEL [dm6]	CA	C	2.882e^-4	0.679	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14477754	3L_14477754_SNP [dm3] 3L_14484654_SNP [dm6]	G	A	2.885e^-4	0.679	INTRON bbg
3L	15712680	3L_15712680_SNP [dm3] 3L_15719580_SNP [dm6]	C	G	2.888e^-4	0.679	NON_SYNONYMOUS_CODING CG42570
2R	6781783	2R_6781783_SNP [dm3] 2R_10894278_SNP [dm6]	G	T	2.896e^-4	0.679	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	6795080	3L_6795080_SNP [dm3] 3L_6801980_SNP [dm6]	C	T	2.898e^-4	0.679	INTERGENIC
2R	12108567	2R_12108567_SNP [dm3] 2R_16221062_SNP [dm6]	C	T	2.906e^-4	0.679	UPSTREAM CR43898 DOWNSTREAM tRNA:CR30240 INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	6567934	3R_6567934_SNP [dm3] 3R_10742212_SNP [dm6]	T	G	2.913e^-4	0.679	INTRON TkR86C
X	20151799	X_20151799_SNP [dm3] X_20280772_SNP [dm6]	G	T	2.917e^-4	0.679	INTERGENIC
3R	22884919	3R_22884919_SNP [dm3] 3R_27059197_SNP [dm6]	T	A	2.917e^-4	0.679	INTRON Nep5
3R	15485063	3R_15485063_SNP [dm3] 3R_19659341_SNP [dm6]	A	G	2.919e^-4	0.679	UPSTREAM ort INTERGENIC
2L	1311735	2L_1311735_INS [dm3] 2L_1311735_INS [dm6]	A	TTTTG	2.919e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25083340	3R_25083340_DEL [dm3] 3R_29257618_DEL [dm6]	GAGGGGCCAGCGATCAGATG...	T	2.920e^-4	0.679	DOWNSTREAM CG45544 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21498217	X_21498217_DEL [dm3] X_21627190_DEL [dm6]	TGTCTGGT	T	2.925e^-4	0.679	INTRON DIP1	transposable element FlyBase
3R	25902047	3R_25902047_SNP [dm3] 3R_30076325_SNP [dm6]	C	T	2.926e^-4	0.679	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	5303072	3L_5303072_SNP [dm3] 3L_5309972_SNP [dm6]	C	G	2.926e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26098644	3R_26098644_SNP [dm3] 3R_30272922_SNP [dm6]	G	T	2.927e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12909485	2L_12909485_SNP [dm3] 2L_12909485_SNP [dm6]	T	A	2.930e^-4	0.679	INTERGENIC
X	14887417	X_14887417_SNP [dm3] X_14993384_SNP [dm6]	A	G	2.930e^-4	0.679	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2168589	3R_2168589_SNP [dm3] 3R_6342867_SNP [dm6]	T	G	2.930e^-4	0.679	UTR_3_PRIME CG17917 UPSTREAM CG10298
X	17302977	X_17302977_SNP [dm3] X_17408944_SNP [dm6]	A	C	2.936e^-4	0.679	INTERGENIC
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	2.938e^-4	0.679	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19764691	3R_19764691_SNP [dm3] 3R_23938969_SNP [dm6]	G	T	2.945e^-4	0.679	UPSTREAM Gdh INTRON Gdh
3R	23330045	3R_23330045_SNP [dm3] 3R_27504323_SNP [dm6]	G	A	2.947e^-4	0.679	INTERGENIC
3R	25260050	3R_25260050_SNP [dm3] 3R_29434328_SNP [dm6]	A	G	2.948e^-4	0.679	INTRON Ptp99A
2R	4528806	2R_4528806_SNP [dm3] 2R_8641301_SNP [dm6]	T	C	2.950e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18278773	3L_18278773_SNP [dm3] 3L_18285673_SNP [dm6]	G	T	2.956e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_Kr
X	19601716	X_19601716_INS [dm3] X_19707683_INS [dm6]	C	TT	2.958e^-4	0.679	INTRON meso18E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15850394	2R_15850394_SNP [dm3] 2R_19962889_SNP [dm6]	A	G	2.965e^-4	0.679	INTERGENIC
X	18134206	X_18134206_SNP [dm3] X_18240173_SNP [dm6]	A	T	2.966e^-4	0.679	DOWNSTREAM upd2 INTERGENIC
X	14782212	X_14782212_SNP [dm3] X_14888179_SNP [dm6]	C	T	2.970e^-4	0.679	INTRON Flo2 & 1 other
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	2.972e^-4	0.679	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17391276	2L_17391276_SNP [dm3] 2L_17391276_SNP [dm6]	T	A	2.973e^-4	0.679	INTRON CLIP-190
3R	16139661	3R_16139661_SNP [dm3] 3R_20313939_SNP [dm6]	G	T	2.974e^-4	0.679	INTRON CG42668
X	18737231	X_18737231_SNP [dm3] X_18843198_SNP [dm6]	T	G	2.975e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	13911343	3R_13911343_SNP [dm3] 3R_18085621_SNP [dm6]	G	C	2.984e^-4	0.679	INTERGENIC
2L	1336822	2L_1336822_SNP [dm3] 2L_1336822_SNP [dm6]	T	A	2.985e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26098337	3R_26098337_SNP [dm3] 3R_30272615_SNP [dm6]	A	G	2.986e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26097564	3R_26097564_SNP [dm3] 3R_30271842_SNP [dm6]	G	C	2.987e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4765375	3R_4765375_SNP [dm3] 3R_8939653_SNP [dm6]	A	T	2.987e^-4	0.679	INTRON skap	TF binding site BDTNP1_TFBS_dl
2L	7103987	2L_7103987_SNP [dm3] 2L_7103987_SNP [dm6]	C	T	2.991e^-4	0.679	INTRON Pvf3
2L	7491974	2L_7491974_SNP [dm3] 2L_7491974_SNP [dm6]	T	C	3.002e^-4	0.679	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	16195395	3R_16195395_SNP [dm3] 3R_20369673_SNP [dm6]	T	G	3.002e^-4	0.679	INTERGENIC
2R	19228150	2R_19228150_SNP [dm3] 2R_23340627_SNP [dm6]	G	A	3.008e^-4	0.679	INTERGENIC
2L	222797	2L_222797_SNP [dm3] 2L_222797_SNP [dm6]	A	C	3.009e^-4	0.679	UPSTREAM kis & 1 other INTRON kis	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	16139643	3R_16139643_SNP [dm3] 3R_20313921_SNP [dm6]	G	A	3.010e^-4	0.679	INTRON CG42668
2R	13183194	2R_13183194_SNP [dm3] 2R_17295689_SNP [dm6]	C	A	3.010e^-4	0.679	INTRON mbl
X	5764575	X_5764575_SNP [dm3] X_5870542_SNP [dm6]	T	C	3.012e^-4	0.679	DOWNSTREAM GAA1 & 1 other INTERGENIC
2R	18635096	2R_18635096_SNP [dm3] 2R_22747591_SNP [dm6]	G	A	3.022e^-4	0.679	INTRON CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5838413	3R_5838413_SNP [dm3] 3R_10012691_SNP [dm6]	G	C	3.025e^-4	0.679	NON_SYNONYMOUS_CODING Mical INTRON Mical
2L	16814785	2L_16814785_SNP [dm3] 2L_16814785_SNP [dm6]	G	A	3.026e^-4	0.679	SYNONYMOUS_CODING CG13272 INTRON CG13280
2R	14645040	2R_14645040_SNP [dm3] 2R_18757535_SNP [dm6]	T	A	3.027e^-4	0.679	DOWNSTREAM Jabba & 1 other INTRON Jabba
3R	885082	3R_885082_SNP [dm3] 3R_5059360_SNP [dm6]	A	G	3.031e^-4	0.679	INTERGENIC
3L	15673515	3L_15673515_SNP [dm3] 3L_15680415_SNP [dm6]	T	C	3.035e^-4	0.679	SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
2R	18182433	2R_18182433_SNP [dm3] 2R_22294928_SNP [dm6]	C	A	3.036e^-4	0.679	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_sens
X	11537951	X_11537951_SNP [dm3] X_11643918_SNP [dm6]	T	C	3.040e^-4	0.679	INTRON Ptp10D
X	8920608	X_8920608_SNP [dm3] X_9026575_SNP [dm6]	T	C	3.045e^-4	0.679	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2L	16543938	2L_16543938_SNP [dm3] 2L_16543938_SNP [dm6]	A	G	3.050e^-4	0.679	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	14463612	2L_14463612_SNP [dm3] 2L_14463612_SNP [dm6]	T	G	3.059e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	11551321	3L_11551321_SNP [dm3] 3L_11558221_SNP [dm6]	G	T	3.062e^-4	0.679	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14907331	X_14907331_SNP [dm3] X_15013298_SNP [dm6]	C	T	3.063e^-4	0.679	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	6531516	2R_6531516_SNP [dm3] 2R_10644011_SNP [dm6]	G	A	3.065e^-4	0.679	INTRON Git	TF binding site mE1_TFBS_HSA
3L	16252795	3L_16252795_SNP [dm3] 3L_16259695_SNP [dm6]	T	A	3.069e^-4	0.679	START_GAINED CG13053 UTR_5_PRIME CG13053 UPSTREAM CG13053
X	5549867	X_5549867_SNP [dm3] X_5655834_SNP [dm6]	A	C	3.073e^-4	0.679	INTRON CG42265	TF binding site BDTNP1_TFBS_da
3L	4217188	3L_4217188_SNP [dm3] 3L_4217188_SNP [dm6]	T	C	3.073e^-4	0.679	DOWNSTREAM Cpr64Ad INTRON CG43367
3L	8956183	3L_8956183_SNP [dm3] 3L_8963083_SNP [dm6]	C	T	3.078e^-4	0.679	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_sens
3L	10491497	3L_10491497_SNP [dm3] 3L_10498397_SNP [dm6]	G	C	3.080e^-4	0.679	INTRON A2bp1
3R	26098426	3R_26098426_SNP [dm3] 3R_30272704_SNP [dm6]	G	A	3.099e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26098427	3R_26098427_SNP [dm3] 3R_30272705_SNP [dm6]	A	T	3.099e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14477835	3L_14477835_SNP [dm3] 3L_14484735_SNP [dm6]	A	T	3.104e^-4	0.679	INTRON bbg
3R	16668003	3R_16668003_SNP [dm3] 3R_20842281_SNP [dm6]	A	T	3.106e^-4	0.679	UTR_5_PRIME CG15695
2L	4044601	2L_4044601_SNP [dm3] 2L_4044601_SNP [dm6]	G	A	3.107e^-4	0.679	INTRON ed	TF binding site BDTNP1_TFBS_dl
X	4005183	X_4005183_SNP [dm3] X_4111150_SNP [dm6]	A	T	3.108e^-4	0.679	DOWNSTREAM Nsun2 & 1 other INTERGENIC	transposable element FlyBase
3L	8820235	3L_8820235_SNP [dm3] 3L_8827135_SNP [dm6]	T	G	3.117e^-4	0.679	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14507693	2R_14507693_SNP [dm3] 2R_18620188_SNP [dm6]	T	A	3.119e^-4	0.679	UPSTREAM CG5493 DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	3.125e^-4	0.679	INTRON Pvf3
3R	4863688	3R_4863688_SNP [dm3] 3R_9037966_SNP [dm6]	T	C	3.131e^-4	0.679	UPSTREAM hyx INTRON neur	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21119798	3L_21119798_SNP [dm3] 3L_21126698_SNP [dm6]	A	G	3.131e^-4	0.679	INTRON ko
3R	25902049	3R_25902049_DEL [dm3] 3R_30076327_DEL [dm6]	GG	G	3.138e^-4	0.679	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	9495028	3R_9495028_SNP [dm3] 3R_13669306_SNP [dm6]	T	G	3.143e^-4	0.679	INTRON Task6
2L	6234641	2L_6234641_SNP [dm3] 2L_6234641_SNP [dm6]	C	A	3.143e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14351216	3R_14351216_SNP [dm3] 3R_18525494_SNP [dm6]	T	C	3.146e^-4	0.679	INTRON fru	TF binding site mE1_TFBS_inv
3R	26097576	3R_26097576_SNP [dm3] 3R_30271854_SNP [dm6]	A	T	3.161e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	3.165e^-4	0.679	SYNONYMOUS_CODING CG15570
2R	13235986	2R_13235986_SNP [dm3] 2R_17348481_SNP [dm6]	T	C	3.170e^-4	0.679	INTRON mbl
3R	26063181	3R_26063181_SNP [dm3] 3R_30237459_SNP [dm6]	A	C	3.175e^-4	0.679	SYNONYMOUS_CODING CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6426152	3R_6426152_SNP [dm3] 3R_10600430_SNP [dm6]	A	T	3.177e^-4	0.679	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17787100	2R_17787100_SNP [dm3] 2R_21899595_SNP [dm6]	A	G	3.180e^-4	0.679	INTRON Fili
X	12941133	X_12941133_SNP [dm3] X_13047100_SNP [dm6]	A	G	3.180e^-4	0.679	INTRON rad
3R	16315109	3R_16315109_SNP [dm3] 3R_20489387_SNP [dm6]	A	C	3.190e^-4	0.679	INTERGENIC
3L	12785725	3L_12785725_SNP [dm3] 3L_12792625_SNP [dm6]	C	T	3.195e^-4	0.679	INTRON Atg1 & 1 other
2L	1157382	2L_1157382_DEL [dm3] 2L_1157382_DEL [dm6]	GG	G	3.195e^-4	0.679	INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18748294	2R_18748294_SNP [dm3] 2R_22860771_SNP [dm6]	G	T	3.196e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14328176	2R_14328176_DEL [dm3] 2R_18440671_DEL [dm6]	TTT	T	3.206e^-4	0.679	UPSTREAM slim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14477801	3L_14477801_SNP [dm3] 3L_14484701_SNP [dm6]	T	A	3.207e^-4	0.679	INTRON bbg
2R	20129305	2R_20129305_SNP [dm3] 2R_24241782_SNP [dm6]	A	G	3.212e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8694293	3L_8694293_SNP [dm3] 3L_8701193_SNP [dm6]	C	T	3.214e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22731497	3R_22731497_SNP [dm3] 3R_26905775_SNP [dm6]	G	A	3.219e^-4	0.679	INTRON T48	regulatory region REDfly_CRMs
2L	3016405	2L_3016405_SNP [dm3] 2L_3016405_SNP [dm6]	G	A	3.222e^-4	0.679	DOWNSTREAM CG17224 & 1 other INTERGENIC
3R	14351182	3R_14351182_SNP [dm3] 3R_18525460_SNP [dm6]	C	T	3.229e^-4	0.679	INTRON fru	TF binding site mE1_TFBS_inv
3R	9495016	3R_9495016_SNP [dm3] 3R_13669294_SNP [dm6]	T	A	3.230e^-4	0.679	INTRON Task6
3R	13781107	3R_13781107_SNP [dm3] 3R_17955385_SNP [dm6]	G	A	3.237e^-4	0.679	INTRON cpo
3R	13781108	3R_13781108_SNP [dm3] 3R_17955386_SNP [dm6]	A	G	3.237e^-4	0.679	INTRON cpo
2R	18932097	2R_18932097_SNP [dm3] 2R_23044574_SNP [dm6]	A	T	3.238e^-4	0.679	INTRON twi	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	9786981	3R_9786981_SNP [dm3] 3R_13961259_SNP [dm6]	T	G	3.242e^-4	0.679	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15259939	3L_15259939_SNP [dm3] 3L_15266839_SNP [dm6]	C	A	3.243e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18737168	X_18737168_SNP [dm3] X_18843135_SNP [dm6]	C	G	3.247e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737175	X_18737175_SNP [dm3] X_18843142_SNP [dm6]	C	G	3.247e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18737252	X_18737252_SNP [dm3] X_18843219_SNP [dm6]	T	A	3.247e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	15177966	X_15177966_SNP [dm3] X_15283933_SNP [dm6]	T	C	3.248e^-4	0.679	INTERGENIC
3R	10512381	3R_10512381_SNP [dm3] 3R_14686659_SNP [dm6]	A	G	3.251e^-4	0.679	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18134330	X_18134330_SNP [dm3] X_18240297_SNP [dm6]	T	C	3.254e^-4	0.679	DOWNSTREAM upd2 INTERGENIC
3L	13297446	3L_13297446_SNP [dm3] 3L_13304346_SNP [dm6]	A	T	3.254e^-4	0.679	DOWNSTREAM CR44555 INTERGENIC
3R	4995451	3R_4995451_SNP [dm3] 3R_9169729_SNP [dm6]	T	C	3.254e^-4	0.679	INTRON pum
2L	11901257	2L_11901257_SNP [dm3] 2L_11901257_SNP [dm6]	C	G	3.255e^-4	0.679	INTRON Pde1c
3R	16549045	3R_16549045_SNP [dm3] 3R_20723323_SNP [dm6]	T	C	3.255e^-4	0.679	INTERGENIC
2R	18967476	2R_18967476_SNP [dm3] 2R_23079953_SNP [dm6]	C	T	3.263e^-4	0.679	UPSTREAM Art7 & 2 others INTERGENIC
3R	9900608	3R_9900608_SNP [dm3] 3R_14074886_SNP [dm6]	A	G	3.264e^-4	0.679	INTRON foxo
2R	6867124	2R_6867124_SNP [dm3] 2R_10979619_SNP [dm6]	T	C	3.269e^-4	0.679	UTR_3_PRIME luna
X	18737163	X_18737163_SNP [dm3] X_18843130_SNP [dm6]	A	T	3.270e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	10037525	3R_10037525_SNP [dm3] 3R_14211803_SNP [dm6]	C	G	3.271e^-4	0.679	INTRON Dop1R1
2R	18753246	2R_18753246_SNP [dm3] 2R_22865723_SNP [dm6]	G	A	3.276e^-4	0.679	INTERGENIC
2L	5650167	2L_5650167_SNP [dm3] 2L_5650167_SNP [dm6]	A	G	3.280e^-4	0.679	INTRON CG31646
2R	16785166	2R_16785166_SNP [dm3] 2R_20897661_SNP [dm6]	T	A	3.283e^-4	0.679	UPSTREAM otp INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4845621	2L_4845621_SNP [dm3] 2L_4845621_SNP [dm6]	G	T	3.287e^-4	0.679	INTRON mxt	TF binding site mE1_TFBS_chinmo
3L	13850738	3L_13850738_SNP [dm3] 3L_13857638_SNP [dm6]	A	C	3.293e^-4	0.679	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
2L	18646395	2L_18646395_SNP [dm3] 2L_18646395_SNP [dm6]	C	A	3.304e^-4	0.679	INTRON MESR3
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	3.317e^-4	0.679	INTRON Oamb
2L	11673531	2L_11673531_SNP [dm3] 2L_11673531_SNP [dm6]	T	G	3.321e^-4	0.679	INTERGENIC
2R	6148102	2R_6148102_SNP [dm3] 2R_10260597_SNP [dm6]	C	T	3.326e^-4	0.679	DOWNSTREAM CR30009 INTRON CG12911
3R	17537127	3R_17537127_SNP [dm3] 3R_21711405_SNP [dm6]	G	A	3.329e^-4	0.679	INTRON CG31176
3L	16349941	3L_16349941_SNP [dm3] 3L_16356841_SNP [dm6]	A	G	3.331e^-4	0.679	UPSTREAM CG45057 INTRON CG45057
3R	23467876	3R_23467876_SNP [dm3] 3R_27642154_SNP [dm6]	T	A	3.331e^-4	0.679	DOWNSTREAM mir-1001 INTRON tau
2R	6573767	2R_6573767_SNP [dm3] 2R_10686262_SNP [dm6]	C	T	3.335e^-4	0.679	INTRON stan
2R	3965644	2R_3965644_SNP [dm3] 2R_8078139_SNP [dm6]	C	T	3.343e^-4	0.679	SYNONYMOUS_CODING lig UTR_3_PRIME lig DOWNSTREAM Vps28
2R	3947008	2R_3947008_SNP [dm3] 2R_8059503_SNP [dm6]	T	A	3.345e^-4	0.679	UPSTREAM CG12769 INTRON CG12769	TF binding site mE1_TFBS_Trl
3L	13849931	3L_13849931_SNP [dm3] 3L_13856831_SNP [dm6]	A	G	3.352e^-4	0.679	INTRON Hml
2R	18991656	2R_18991656_SNP [dm3] 2R_23104133_SNP [dm6]	G	A	3.355e^-4	0.679	UPSTREAM Gr59c INTRON Gr59d
X	14720332	X_14720332_SNP [dm3] X_14826299_SNP [dm6]	G	A	3.356e^-4	0.679	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16291690	3L_16291690_SNP [dm3] 3L_16298590_SNP [dm6]	C	T	3.358e^-4	0.679	INTERGENIC
3R	16275291	3R_16275291_SNP [dm3] 3R_20449569_SNP [dm6]	G	A	3.358e^-4	0.679	UTR_5_PRIME Gfrl INTRON Gfrl
3R	24938752	3R_24938752_SNP [dm3] 3R_29113030_SNP [dm6]	C	A	3.364e^-4	0.679	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4858725	3L_4858725_SNP [dm3] 3L_4858725_SNP [dm6]	C	A	3.365e^-4	0.679	INTERGENIC
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	3.373e^-4	0.679	INTERGENIC
2L	6359463	2L_6359463_INS [dm3] 2L_6359463_INS [dm6]	T	TAT	3.373e^-4	0.679	UPSTREAM CR44778 EXON CR44777
3R	23474772	3R_23474772_SNP [dm3] 3R_27649050_SNP [dm6]	C	T	3.379e^-4	0.679	SYNONYMOUS_CODING tau INTRON tau
3L	17591663	3L_17591663_SNP [dm3] 3L_17598563_SNP [dm6]	G	A	3.381e^-4	0.679	INTRON Eip74EF
2R	18203616	2R_18203616_SNP [dm3] 2R_22316111_SNP [dm6]	G	C	3.381e^-4	0.679	INTRON CR44758
2R	9819696	2R_9819696_SNP [dm3] 2R_13932191_SNP [dm6]	A	C	3.384e^-4	0.679	INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5071680	2L_5071680_SNP [dm3] 2L_5071680_SNP [dm6]	C	T	3.393e^-4	0.679	SYNONYMOUS_CODING RpL37A UPSTREAM CR45305 DOWNSTREAM qtc & 1 other	TF binding site BDTNP1_TFBS_dl
X	18124397	X_18124397_SNP [dm3] X_18230364_SNP [dm6]	A	G	3.410e^-4	0.679	INTERGENIC
X	19126104	X_19126104_SNP [dm3] X_19232071_SNP [dm6]	A	G	3.414e^-4	0.679	INTRON CG7884
2R	19593575	2R_19593575_SNP [dm3] 2R_23706052_SNP [dm6]	C	G	3.416e^-4	0.679	NON_SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14363518	X_14363518_SNP [dm3] X_14469485_SNP [dm6]	T	C	3.425e^-4	0.679	INTERGENIC
3L	1699364	3L_1699364_SNP [dm3] 3L_1699364_SNP [dm6]	A	C	3.426e^-4	0.679	INTRON CG7991	TF binding site BDTNP1_TFBS_prd
3L	6795081	3L_6795081_SNP [dm3] 3L_6801981_SNP [dm6]	T	G	3.427e^-4	0.679	INTERGENIC
2R	18361459	2R_18361459_SNP [dm3] 2R_22473954_SNP [dm6]	A	G	3.433e^-4	0.679	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad
X	18737234	X_18737234_SNP [dm3] X_18843201_SNP [dm6]	T	C	3.433e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737165	X_18737165_SNP [dm3] X_18843132_SNP [dm6]	A	T	3.435e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	11786240	2R_11786240_SNP [dm3] 2R_15898735_SNP [dm6]	C	G	3.438e^-4	0.679	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13997428	X_13997428_SNP [dm3] X_14103395_SNP [dm6]	G	A	3.440e^-4	0.679	DOWNSTREAM tRNA:R:12Ef EXON tRNA:S4:12Ee	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16305012	X_16305012_SNP [dm3] X_16410979_SNP [dm6]	C	T	3.443e^-4	0.679	SYNONYMOUS_CODING CG4301
3R	8147154	3R_8147154_SNP [dm3] 3R_12321432_SNP [dm6]	C	T	3.447e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3442310	3L_3442310_SNP [dm3] 3L_3442310_SNP [dm6]	A	G	3.450e^-4	0.679	INTRON eIF5B
2L	1157667	2L_1157667_SNP [dm3] 2L_1157667_SNP [dm6]	T	C	3.453e^-4	0.679	UPSTREAM Tango14 DOWNSTREAM CR43767 INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	3856458	3R_3856458_SNP [dm3] 3R_8030736_SNP [dm6]	A	G	3.454e^-4	0.679	UTR_5_PRIME CG2747 UPSTREAM CG10903 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17297269	X_17297269_SNP [dm3] X_17403236_SNP [dm6]	G	A	3.457e^-4	0.679	UTR_3_PRIME B-H1
2R	17156466	2R_17156466_SNP [dm3] 2R_21268961_SNP [dm6]	A	C	3.462e^-4	0.679	INTRON Rgk3
2L	2842903	2L_2842903_SNP [dm3] 2L_2842903_SNP [dm6]	G	A	3.468e^-4	0.679	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
X	18222957	X_18222957_SNP [dm3] X_18328924_SNP [dm6]	T	C	3.470e^-4	0.679	INTRON CG6123
2R	18186684	2R_18186684_SNP [dm3] 2R_22299179_SNP [dm6]	T	C	3.471e^-4	0.679	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5607065	2R_5607065_SNP [dm3] 2R_9719560_SNP [dm6]	T	A	3.472e^-4	0.679	NON_SYNONYMOUS_CODING sqa
3R	5484042	3R_5484042_SNP [dm3] 3R_9658320_SNP [dm6]	C	T	3.477e^-4	0.679	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3416959	3L_3416959_SNP [dm3] 3L_3416959_SNP [dm6]	T	C	3.478e^-4	0.679	UTR_5_PRIME sty INTRON sty	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	16296593	3R_16296593_SNP [dm3] 3R_20470871_SNP [dm6]	T	C	3.478e^-4	0.679	INTRON Gfrl
2L	2513835	2L_2513835_SNP [dm3] 2L_2513835_SNP [dm6]	A	T	3.479e^-4	0.679	INTERGENIC
2R	13641321	2R_13641321_SNP [dm3] 2R_17753816_SNP [dm6]	C	T	3.481e^-4	0.679	SYNONYMOUS_CODING CG6385 DOWNSTREAM CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18398268	2R_18398268_SNP [dm3] 2R_22510763_SNP [dm6]	C	G	3.490e^-4	0.679	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	18515707	3R_18515707_SNP [dm3] 3R_22689985_SNP [dm6]	G	C	3.495e^-4	0.679	NON_SYNONYMOUS_CODING wfs1 UPSTREAM Nup133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15850303	2L_15850303_SNP [dm3] 2L_15850303_SNP [dm6]	G	A	3.496e^-4	0.679	INTERGENIC
2R	14649714	2R_14649714_SNP [dm3] 2R_18762209_SNP [dm6]	C	T	3.499e^-4	0.679	UTR_5_PRIME Mctp
2R	14765726	2R_14765726_SNP [dm3] 2R_18878221_SNP [dm6]	T	A	3.509e^-4	0.679	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4422045	2L_4422045_SNP [dm3] 2L_4422045_SNP [dm6]	G	C	3.513e^-4	0.679	INTRON CG15431
X	17299194	X_17299194_SNP [dm3] X_17405161_SNP [dm6]	G	A	3.514e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8349992	2R_8349992_SNP [dm3] 2R_12462487_SNP [dm6]	G	T	3.520e^-4	0.679	INTRON Lac	TF binding site BDTNP1_TFBS_dl
3L	10504246	3L_10504246_SNP [dm3] 3L_10511146_SNP [dm6]	A	G	3.521e^-4	0.679	INTRON A2bp1
2R	16425647	2R_16425647_SNP [dm3] 2R_20538142_SNP [dm6]	C	T	3.523e^-4	0.679	SYNONYMOUS_CODING CG13423 DOWNSTREAM CG13427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	18737250	X_18737250_INS [dm3] X_18843217_INS [dm6]	A	ATCTGTATGCTG...	3.527e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	6833270	2R_6833270_SNP [dm3] 2R_10945765_SNP [dm6]	T	C	3.533e^-4	0.679	UPSTREAM CR45228 INTERGENIC
X	18737238	X_18737238_SNP [dm3] X_18843205_SNP [dm6]	C	A	3.535e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	10868792	X_10868792_SNP [dm3] X_10974759_SNP [dm6]	A	T	3.536e^-4	0.679	INTRON CG42339
3L	6843560	3L_6843560_SNP [dm3] 3L_6850460_SNP [dm6]	C	T	3.536e^-4	0.679	INTERGENIC
2R	9824349	2R_9824349_SNP [dm3] 2R_13936844_SNP [dm6]	T	G	3.545e^-4	0.679	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3876461	X_3876461_SNP [dm3] X_3982428_SNP [dm6]	T	A	3.548e^-4	0.679	INTERGENIC
3R	10785501	3R_10785501_SNP [dm3] 3R_14959779_SNP [dm6]	C	T	3.550e^-4	0.679	INTERGENIC
3L	14283118	3L_14283118_SNP [dm3] 3L_14290018_SNP [dm6]	T	C	3.554e^-4	0.679	INTRON fz
X	21869711	X_21869711_SNP [dm3] X_22467875_SNP [dm6]	A	G	3.563e^-4	0.679	INTRON CG14619
X	18737017	X_18737017_SNP [dm3] X_18842984_SNP [dm6]	A	T	3.568e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	7969877	2L_7969877_SNP [dm3] 2L_7969877_SNP [dm6]	A	G	3.568e^-4	0.679	INTRON Snoo
3R	25260176	3R_25260176_SNP [dm3] 3R_29434454_SNP [dm6]	G	A	3.569e^-4	0.679	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
2R	16425643	2R_16425643_SNP [dm3] 2R_20538138_SNP [dm6]	A	G	3.570e^-4	0.679	SYNONYMOUS_CODING CG13423 DOWNSTREAM CG13427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	18763579	X_18763579_SNP [dm3] X_18869546_SNP [dm6]	G	C	3.571e^-4	0.679	INTRON CG34401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19050855	3R_19050855_SNP [dm3] 3R_23225133_SNP [dm6]	C	A	3.572e^-4	0.679	INTRON cnc	TF binding site BDTNP1_TFBS_dl
X	18129354	X_18129354_DEL [dm3] X_18235321_DEL [dm6]	CTTTATGTGC	C	3.572e^-4	0.679	INTERGENIC
2L	5336458	2L_5336458_DEL [dm3] 2L_5336458_DEL [dm6]	TC	T	3.578e^-4	0.679	UPSTREAM fusl INTRON fusl
2R	3517300	2R_3517300_SNP [dm3] 2R_7629795_SNP [dm6]	T	G	3.580e^-4	0.679	INTRON CG43340
3L	13753114	3L_13753114_SNP [dm3] 3L_13760014_SNP [dm6]	G	A	3.588e^-4	0.679	INTRON bru-3
3L	15695863	3L_15695863_SNP [dm3] 3L_15702763_SNP [dm6]	G	A	3.589e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23255310	3R_23255310_SNP [dm3] 3R_27429588_SNP [dm6]	G	T	3.602e^-4	0.679	INTRON side
2R	6822906	2R_6822906_SNP [dm3] 2R_10935401_SNP [dm6]	A	C	3.603e^-4	0.679	INTERGENIC
3L	10823351	3L_10823351_SNP [dm3] 3L_10830251_SNP [dm6]	T	A	3.617e^-4	0.679	INTERGENIC
X	18171548	X_18171548_SNP [dm3] X_18277515_SNP [dm6]	A	T	3.621e^-4	0.679	UTR_5_PRIME upd3
3L	9395707	3L_9395707_SNP [dm3] 3L_9402607_SNP [dm6]	T	C	3.622e^-4	0.679	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14351235	3R_14351235_DEL [dm3] 3R_18525513_DEL [dm6]	TCGATAT	T	3.626e^-4	0.679	INTRON fru	TF binding site mE1_TFBS_inv
X	10576534	X_10576534_SNP [dm3] X_10682501_SNP [dm6]	A	G	3.631e^-4	0.679	INTRON X11Lbeta
X	18737245	X_18737245_INS [dm3] X_18843212_INS [dm6]	A	TCTC	3.638e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	2893646	2L_2893646_SNP [dm3] 2L_2893646_SNP [dm6]	T	A	3.640e^-4	0.679	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6578755	2L_6578755_SNP [dm3] 2L_6578755_SNP [dm6]	G	A	3.642e^-4	0.679	INTRON CG11319
3R	6899808	3R_6899808_SNP [dm3] 3R_11074086_SNP [dm6]	C	T	3.644e^-4	0.679	INTERGENIC
2L	1587779	2L_1587779_SNP [dm3] 2L_1587779_SNP [dm6]	T	G	3.646e^-4	0.679	UPSTREAM CG10869 INTRON haf
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	3.647e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.050e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.009734

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	17.0315	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2468 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	4.856e^-13	9.107e^-7	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	3.102e^-12	2.909e^-6	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	6.497e^-12	4.062e^-6	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.000e^-11	4.691e^-6	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.710e^-11	5.913e^-6	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.892e^-11	5.913e^-6	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	3.120e^-11	8.361e^-6	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	3.688e^-11	8.647e^-6	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.235e^-10	2.574e^-5	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	2.926e^-10	5.489e^-5	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	4.987e^-10	8.504e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	1.084e^-9	1.591e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	1.115e^-9	1.591e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	1.187e^-9	1.591e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	1.636e^-9	1.854e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	1.680e^-9	1.854e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	1.680e^-9	1.854e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	1.886e^-9	1.965e^-4	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	2.060e^-9	2.011e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	2.144e^-9	2.011e^-4	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	2.972e^-9	2.655e^-4	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	3.916e^-9	3.339e^-4	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	4.941e^-9	4.003e^-4	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	5.121e^-9	4.003e^-4	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	5.936e^-9	4.453e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	7.758e^-9	5.597e^-4	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	9.629e^-9	6.689e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.032e^-8	6.913e^-4	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	1.077e^-8	6.964e^-4	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	1.336e^-8	8.356e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	1.388e^-8	8.401e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	1.966e^-8	0.001	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	2.778e^-8	0.002	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	3.900e^-8	0.002	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	4.026e^-8	0.002	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	4.782e^-8	0.002	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	5.257e^-8	0.003	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	6.053e^-8	0.003	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	6.124e^-8	0.003	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	8.885e^-8	0.004	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	9.882e^-8	0.005	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	1.140e^-7	0.005	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	1.202e^-7	0.005	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	1.325e^-7	0.006	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.517e^-7	0.006	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	2.006e^-7	0.008	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	2.026e^-7	0.008	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	2.069e^-7	0.008	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	2.105e^-7	0.008	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	2.872e^-7	0.011	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	3.947e^-7	0.015	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	4.712e^-7	0.016	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	4.739e^-7	0.016	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	4.739e^-7	0.016	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	4.872e^-7	0.017	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	5.425e^-7	0.018	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9253717	3L_9253717_SNP [dm3] 3L_9260617_SNP [dm6]	A	T	6.206e^-7	0.02	INTRON GluRIB
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	7.029e^-7	0.023	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	9.821e^-7	0.031	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	1.023e^-6	0.032	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	1.167e^-6	0.036	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	1.245e^-6	0.038	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	1.301e^-6	0.039	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	1.370e^-6	0.04	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	1.723e^-6	0.05	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	1.805e^-6	0.051	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	2.220e^-6	0.062	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	2.667e^-6	0.074	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	2.976e^-6	0.081	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8509116	2L_8509116_SNP [dm3] 2L_8509116_SNP [dm6]	C	T	3.117e^-6	0.084	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	3.208e^-6	0.085	INTERGENIC
X	4881421	X_4881421_SNP [dm3] X_4987388_SNP [dm6]	G	A	3.425e^-6	0.089	INTRON CR44833	regulatory region REDfly_CRMs
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	3.492e^-6	0.09	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	4839089	X_4839089_SNP [dm3] X_4945056_SNP [dm6]	A	G	3.626e^-6	0.092	INTRON Ptp4E
3L	11912956	3L_11912956_SNP [dm3] 3L_11919856_SNP [dm6]	G	T	3.663e^-6	0.092	INTRON CG44837
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	3.818e^-6	0.094	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	4.006e^-6	0.098	DOWNSTREAM mats INTRON pinta
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	4.210e^-6	0.101	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19112790	X_19112790_SNP [dm3] X_19218757_SNP [dm6]	G	C	4.450e^-6	0.104	INTERGENIC
X	19112795	X_19112795_SNP [dm3] X_19218762_SNP [dm6]	T	G	4.450e^-6	0.104	INTERGENIC
2L	5566821	2L_5566821_SNP [dm3] 2L_5566821_SNP [dm6]	G	A	4.907e^-6	0.114	INTERGENIC
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	5.010e^-6	0.115	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	23475233	3R_23475233_SNP [dm3] 3R_27649511_SNP [dm6]	C	T	5.098e^-6	0.115	UTR_5_PRIME tau INTRON tau
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	5.184e^-6	0.116	INTRON GluClalpha
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	5.304e^-6	0.117	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2R	15658328	2R_15658328_SNP [dm3] 2R_19770823_SNP [dm6]	C	A	6.126e^-6	0.134	SPLICE_SITE_REGION Or56a INTRON Or56a
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	6.515e^-6	0.14	INTERGENIC
2R	11870835	2R_11870835_SNP [dm3] 2R_15983330_SNP [dm6]	G	A	6.846e^-6	0.146	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
3L	13383103	3L_13383103_SNP [dm3] 3L_13390003_SNP [dm6]	T	C	7.096e^-6	0.15	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10378565	3L_10378565_SNP [dm3] 3L_10385465_SNP [dm6]	G	A	7.361e^-6	0.153	UPSTREAM CR45245 INTERGENIC
3L	1807164	3L_1807164_SNP [dm3] 3L_1807164_SNP [dm6]	C	T	7.890e^-6	0.163	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	8.448e^-6	0.172	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
X	3558599	X_3558599_SNP [dm3] X_3664566_SNP [dm6]	C	G	8.695e^-6	0.175	SYNONYMOUS_CODING AstA-R1
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	9.198e^-6	0.183	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11637450	2R_11637450_SNP [dm3] 2R_15749945_SNP [dm6]	C	A	9.256e^-6	0.183	INTRON CG30089
2R	3423193	2R_3423193_SNP [dm3] 2R_7535688_SNP [dm6]	G	A	9.925e^-6	0.193	UTR_3_PRIME Cyt-b5 UPSTREAM CG2137
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	1.000e^-5	0.193	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	1.042e^-5	0.197	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15657367	2R_15657367_SNP [dm3] 2R_19769862_SNP [dm6]	G	T	1.042e^-5	0.197	INTRON Or56a
2R	12806058	2R_12806058_SNP [dm3] 2R_16918553_SNP [dm6]	C	A	1.167e^-5	0.219	INTERGENIC
3R	16531964	3R_16531964_SNP [dm3] 3R_20706242_SNP [dm6]	C	G	1.185e^-5	0.22	UTR_5_PRIME Oamb INTRON Oamb
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	1.241e^-5	0.228	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	1.252e^-5	0.228	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	1.266e^-5	0.228	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25909513	3R_25909513_SNP [dm3] 3R_30083791_SNP [dm6]	G	T	1.296e^-5	0.232	INTRON sima
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	1.312e^-5	0.232	INTRON CG17834	TF binding site mE1_TFBS_cad
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	1.381e^-5	0.242	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	1.408e^-5	0.245	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	1.431e^-5	0.246	INTRON CG17834
2R	15657204	2R_15657204_SNP [dm3] 2R_19769699_SNP [dm6]	G	A	1.466e^-5	0.25	SYNONYMOUS_CODING Or56a
2L	12726794	2L_12726794_SNP [dm3] 2L_12726794_SNP [dm6]	C	T	1.497e^-5	0.25	SYNONYMOUS_CODING MRP
X	14434961	X_14434961_SNP [dm3] X_14540928_SNP [dm6]	A	G	1.505e^-5	0.25	EXON CR45521
2R	18798021	2R_18798021_SNP [dm3] 2R_22910498_SNP [dm6]	A	G	1.509e^-5	0.25	INTRON nahoda
3L	14447335	3L_14447335_SNP [dm3] 3L_14454235_SNP [dm6]	G	T	1.539e^-5	0.253	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	1.581e^-5	0.257	INTERGENIC
3R	18869010	3R_18869010_SNP [dm3] 3R_23043288_SNP [dm6]	T	G	1.587e^-5	0.257	UPSTREAM CG13837 DOWNSTREAM CG13838 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	1.652e^-5	0.263	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	16758090	3R_16758090_SNP [dm3] 3R_20932368_SNP [dm6]	A	C	1.657e^-5	0.263	INTRON CG31191
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	1.667e^-5	0.263	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7727987	3R_7727987_SNP [dm3] 3R_11902265_SNP [dm6]	A	G	1.775e^-5	0.277	INTRON Cad87A
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	1.803e^-5	0.28	INTRON CG9932
2L	8519679	2L_8519679_SNP [dm3] 2L_8519679_SNP [dm6]	T	C	1.840e^-5	0.283	UPSTREAM CG13091 DOWNSTREAM CG13090 INTERGENIC
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	1.989e^-5	0.303	INTERGENIC
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	2.023e^-5	0.306	INTRON CG9932
X	14435561	X_14435561_SNP [dm3] X_14541528_SNP [dm6]	C	T	2.067e^-5	0.31	EXON CR45521
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	2.152e^-5	0.315	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	8526006	2L_8526006_SNP [dm3] 2L_8526006_SNP [dm6]	T	C	2.153e^-5	0.315	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
X	3270711	X_3270711_SNP [dm3] X_3376678_SNP [dm6]	A	C	2.173e^-5	0.315	INTRON dm & 1 other
2L	13253659	2L_13253659_SNP [dm3] 2L_13253659_SNP [dm6]	T	C	2.178e^-5	0.315	INTRON CG31728
3L	14486425	3L_14486425_SNP [dm3] 3L_14493325_SNP [dm6]	A	G	2.186e^-5	0.315	INTRON bbg
3L	19410768	3L_19410768_SNP [dm3] 3L_19417668_SNP [dm6]	C	T	2.204e^-5	0.316	INTERGENIC
X	18164774	X_18164774_INS [dm3] X_18270741_INS [dm6]	C	CCC	2.328e^-5	0.331	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6342777	3R_6342777_SNP [dm3] 3R_10517055_SNP [dm6]	T	G	2.349e^-5	0.331	INTRON hth
X	12201005	X_12201005_DEL [dm3] X_12306972_DEL [dm6]	CCCCTTAGTTTTC...	C	2.426e^-5	0.338	INTRON Ten-a
2R	15657426	2R_15657426_SNP [dm3] 2R_19769921_SNP [dm6]	G	A	2.450e^-5	0.338	INTRON Or56a
2R	20120826	2R_20120826_SNP [dm3] 2R_24233303_SNP [dm6]	G	C	2.453e^-5	0.338	INTERGENIC
2L	13090763	2L_13090763_SNP [dm3] 2L_13090763_SNP [dm6]	C	T	2.475e^-5	0.338	DOWNSTREAM CR44197 INTERGENIC
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	2.489e^-5	0.338	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	5057847	2L_5057847_SNP [dm3] 2L_5057847_SNP [dm6]	G	A	2.507e^-5	0.338	NON_SYNONYMOUS_CODING CG31918 DOWNSTREAM Rpn11	TF binding site mE1_TFBS_sens
X	12201048	X_12201048_SNP [dm3] X_12307015_SNP [dm6]	C	G	2.538e^-5	0.34	INTRON Ten-a
2L	3084548	2L_3084548_SNP [dm3] 2L_3084548_SNP [dm6]	G	A	2.562e^-5	0.341	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4687445	2L_4687445_SNP [dm3] 2L_4687445_SNP [dm6]	A	G	2.609e^-5	0.342	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4687506	2L_4687506_SNP [dm3] 2L_4687506_SNP [dm6]	G	A	2.609e^-5	0.342	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8526027	2L_8526027_SNP [dm3] 2L_8526027_SNP [dm6]	G	A	2.666e^-5	0.344	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526055	2L_8526055_SNP [dm3] 2L_8526055_SNP [dm6]	G	A	2.666e^-5	0.344	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	3378511	2L_3378511_SNP [dm3] 2L_3378511_SNP [dm6]	T	G	2.676e^-5	0.344	UTR_3_PRIME Ptpa
2L	4687537	2L_4687537_SNP [dm3] 2L_4687537_SNP [dm6]	C	G	2.706e^-5	0.345	UTR_5_PRIME Elba3 DOWNSTREAM CG11929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6298742	2L_6298742_SNP [dm3] 2L_6298742_SNP [dm6]	C	G	2.753e^-5	0.349	INTRON Ddr
2L	4687470	2L_4687470_SNP [dm3] 2L_4687470_SNP [dm6]	A	T	2.795e^-5	0.352	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	2.826e^-5	0.353	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2L	5194140	2L_5194140_SNP [dm3] 2L_5194140_SNP [dm6]	C	G	2.872e^-5	0.357	SYNONYMOUS_CODING Msp300 DOWNSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16737226	2R_16737226_SNP [dm3] 2R_20849721_SNP [dm6]	A	C	2.904e^-5	0.358	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18005133	2R_18005133_SNP [dm3] 2R_22117628_SNP [dm6]	A	C	2.993e^-5	0.367	INTRON Vrp1
3R	25563247	3R_25563247_SNP [dm3] 3R_29737525_SNP [dm6]	T	C	3.143e^-5	0.383	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17576362	X_17576362_SNP [dm3] X_17682329_SNP [dm6]	G	C	3.186e^-5	0.383	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15658330	2R_15658330_SNP [dm3] 2R_19770825_SNP [dm6]	A	T	3.188e^-5	0.383	INTRON Or56a
3R	17775756	3R_17775756_SNP [dm3] 3R_21950034_SNP [dm6]	T	C	3.204e^-5	0.383	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	3.222e^-5	0.383	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5193789	2L_5193789_SNP [dm3] 2L_5193789_SNP [dm6]	C	T	3.289e^-5	0.385	SYNONYMOUS_CODING Msp300 DOWNSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11284903	3R_11284903_DEL [dm3] 3R_15459181_DEL [dm6]	ATA	A	3.307e^-5	0.385	INTRON AdamTS-A
3R	15584465	3R_15584465_SNP [dm3] 3R_19758743_SNP [dm6]	C	G	3.309e^-5	0.385	INTRON GluClalpha
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	3.324e^-5	0.385	INTERGENIC
2L	5672389	2L_5672389_SNP [dm3] 2L_5672389_SNP [dm6]	G	A	3.440e^-5	0.396	INTERGENIC
3R	16758087	3R_16758087_SNP [dm3] 3R_20932365_SNP [dm6]	T	G	3.466e^-5	0.396	INTRON CG31191
2L	5003204	2L_5003204_SNP [dm3] 2L_5003204_SNP [dm6]	A	G	3.483e^-5	0.396	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	13765223	3R_13765223_SNP [dm3] 3R_17939501_SNP [dm6]	C	T	3.508e^-5	0.396	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11285462	X_11285462_SNP [dm3] X_11391429_SNP [dm6]	T	C	3.587e^-5	0.398	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
2L	9374837	2L_9374837_SNP [dm3] 2L_9374837_SNP [dm6]	C	A	3.616e^-5	0.398	DOWNSTREAM CR43865 INTRON Shawl
2L	8494497	2L_8494497_SNP [dm3] 2L_8494497_SNP [dm6]	G	A	3.618e^-5	0.398	DOWNSTREAM Bace INTRON Dh31
2L	12160224	2L_12160224_INS [dm3] 2L_12160224_INS [dm6]	A	AGGATTTTA	3.634e^-5	0.398	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18276415	2R_18276415_SNP [dm3] 2R_22388910_SNP [dm6]	G	A	3.646e^-5	0.398	INTRON CG13506
3L	16924626	3L_16924626_SNP [dm3] 3L_16931526_SNP [dm6]	A	T	3.654e^-5	0.398	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	3.682e^-5	0.399	INTRON CG13917
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	3.726e^-5	0.402	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2R	15658349	2R_15658349_SNP [dm3] 2R_19770844_SNP [dm6]	C	A	3.755e^-5	0.402	INTRON Or56a
3R	13765469	3R_13765469_INS [dm3] 3R_17939747_INS [dm6]	G	GCGTTT	3.773e^-5	0.402	INTRON cpo	TF binding site mE1_TFBS_sens
2L	7263760	2L_7263760_SNP [dm3] 2L_7263760_SNP [dm6]	T	C	3.871e^-5	0.408	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1746146	2L_1746146_SNP [dm3] 2L_1746146_SNP [dm6]	C	A	3.892e^-5	0.408	INTRON CG17646
2L	4710173	2L_4710173_SNP [dm3] 2L_4710173_SNP [dm6]	G	A	3.892e^-5	0.408	INTRON CG34351
2L	9374839	2L_9374839_SNP [dm3] 2L_9374839_SNP [dm6]	G	A	3.913e^-5	0.408	DOWNSTREAM CR43865 INTRON Shawl
2R	15658364	2R_15658364_SNP [dm3] 2R_19770859_SNP [dm6]	A	T	3.970e^-5	0.411	INTRON Or56a
2L	8534074	2L_8534074_SNP [dm3] 2L_8534074_SNP [dm6]	C	T	4.018e^-5	0.414	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	5963421	3L_5963421_SNP [dm3] 3L_5970321_SNP [dm6]	A	G	4.119e^-5	0.419	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22303069	X_22303069_DEL [dm3] X_22901233_DEL [dm6]	ATTA	A	4.146e^-5	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8506197	2L_8506197_SNP [dm3] 2L_8506197_SNP [dm6]	T	C	4.150e^-5	0.419	INTRON Dh31
2R	10551083	2R_10551083_SNP [dm3] 2R_14663578_SNP [dm6]	C	G	4.151e^-5	0.419	DOWNSTREAM CG12861 INTERGENIC
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	4.287e^-5	0.428	INTERGENIC
X	2465469	X_2465469_SNP [dm3] X_2571436_SNP [dm6]	A	G	4.288e^-5	0.428	UPSTREAM Pdfr INTRON Pdfr
2L	7462764	2L_7462764_SNP [dm3] 2L_7462764_SNP [dm6]	A	G	4.356e^-5	0.431	UPSTREAM Gr28b INTERGENIC
3L	18564762	3L_18564762_SNP [dm3] 3L_18571662_SNP [dm6]	G	T	4.369e^-5	0.431	INTRON AstC-R1
X	5152394	X_5152394_INS [dm3] X_5258361_INS [dm6]	A	AG	4.429e^-5	0.435	INTERGENIC
2L	8714066	2L_8714066_SNP [dm3] 2L_8714066_SNP [dm6]	T	G	4.488e^-5	0.438	INTRON raw
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	4.525e^-5	0.439	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	4.567e^-5	0.439	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
3R	26274796	3R_26274796_SNP [dm3] 3R_30449074_SNP [dm6]	G	A	4.569e^-5	0.439	SYNONYMOUS_CODING aralar1	TF binding site mE1_TFBS_chinmo
2R	11589944	2R_11589944_SNP [dm3] 2R_15702439_SNP [dm6]	A	G	4.668e^-5	0.442	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9944111	2L_9944111_SNP [dm3] 2L_9944111_SNP [dm6]	G	C	4.731e^-5	0.442	INTRON CG5853
2R	3418973	2R_3418973_SNP [dm3] 2R_7531468_SNP [dm6]	A	C	4.746e^-5	0.442	UPSTREAM Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5197312	2L_5197312_SNP [dm3] 2L_5197312_SNP [dm6]	C	A	4.760e^-5	0.442	INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5152370	X_5152370_SNP [dm3] X_5258337_SNP [dm6]	C	T	4.775e^-5	0.442	INTERGENIC
2L	13048482	2L_13048482_SNP [dm3] 2L_13048482_SNP [dm6]	T	G	4.787e^-5	0.442	INTRON CG9932
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	4.791e^-5	0.442	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5003170	2L_5003170_SNP [dm3] 2L_5003170_SNP [dm6]	C	T	4.793e^-5	0.442	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17762600	2R_17762600_DEL [dm3] 2R_21875095_DEL [dm6]	ATGACACGAGA...	A	4.811e^-5	0.442	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12201972	X_12201972_DEL [dm3] X_12307939_DEL [dm6]	GTTTCAG	G	4.840e^-5	0.443	INTRON Ten-a
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	4.865e^-5	0.443	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
3L	18304717	3L_18304717_SNP [dm3] 3L_18311617_SNP [dm6]	G	A	4.925e^-5	0.446	INTERGENIC
3L	9720438	3L_9720438_DEL [dm3] 3L_9727338_DEL [dm6]	TACGAAT	T	4.943e^-5	0.446	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	4.991e^-5	0.447	INTERGENIC
2L	3378508	2L_3378508_SNP [dm3] 2L_3378508_SNP [dm6]	A	T	5.006e^-5	0.447	UTR_3_PRIME Ptpa
2L	9175912	2L_9175912_SNP [dm3] 2L_9175912_SNP [dm6]	T	A	5.063e^-5	0.447	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	17166513	X_17166513_SNP [dm3] X_17272480_SNP [dm6]	G	A	5.068e^-5	0.447	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	5.092e^-5	0.447	INTERGENIC
X	5828943	X_5828943_SNP [dm3] X_5934910_SNP [dm6]	T	C	5.099e^-5	0.447	INTRON CG3726
2R	17370907	2R_17370907_SNP [dm3] 2R_21483402_SNP [dm6]	A	G	5.140e^-5	0.448	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	5.222e^-5	0.453	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	25909499	3R_25909499_DEL [dm3] 3R_30083777_DEL [dm6]	ATGTGAACCA	A	5.303e^-5	0.458	INTRON sima
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	5.322e^-5	0.458	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14662621	2R_14662621_SNP [dm3] 2R_18775116_SNP [dm6]	G	A	5.366e^-5	0.46	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	12141854	2L_12141854_SNP [dm3] 2L_12141854_SNP [dm6]	C	T	5.442e^-5	0.462	UPSTREAM CG31760 INTERGENIC
2L	8299736	2L_8299736_DEL [dm3] 2L_8299736_DEL [dm6]	AAAAAGGCA	A	5.470e^-5	0.462	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2R	13863482	2R_13863482_SNP [dm3] 2R_17975977_SNP [dm6]	T	A	5.471e^-5	0.462	UTR_3_PRIME dpr13
3R	22134010	3R_22134010_SNP [dm3] 3R_26308288_SNP [dm6]	G	C	5.514e^-5	0.464	INTERGENIC
2L	5564340	2L_5564340_SNP [dm3] 2L_5564340_SNP [dm6]	T	C	5.537e^-5	0.464	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2L	3505683	2L_3505683_SNP [dm3] 2L_3505683_SNP [dm6]	T	A	5.596e^-5	0.467	INTRON tim	TF binding site BDTNP1_TFBS_twi
2L	8714067	2L_8714067_SNP [dm3] 2L_8714067_SNP [dm6]	T	A	5.631e^-5	0.467	INTRON raw
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	5.703e^-5	0.469	INTERGENIC
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	5.710e^-5	0.469	INTRON CG17834
2L	6966920	2L_6966920_SNP [dm3] 2L_6966920_SNP [dm6]	T	C	5.725e^-5	0.469	UTR_3_PRIME smt3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	5.759e^-5	0.47	INTERGENIC
2L	15763356	2L_15763356_INS [dm3] 2L_15763356_INS [dm6]	T	TA	5.821e^-5	0.471	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26471851	3R_26471851_SNP [dm3] 3R_30646129_SNP [dm6]	C	T	5.830e^-5	0.471	UTR_3_PRIME PH4alphaPV UPSTREAM CG31013
2R	14662693	2R_14662693_SNP [dm3] 2R_18775188_SNP [dm6]	C	G	5.868e^-5	0.472	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	10855352	X_10855352_SNP [dm3] X_10961319_SNP [dm6]	G	C	6.056e^-5	0.485	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	6.184e^-5	0.493	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2L	1966776	2L_1966776_SNP [dm3] 2L_1966776_SNP [dm6]	A	T	6.198e^-5	0.493	INTRON erm	TF binding site BDTNP1_TFBS_da
X	11973390	X_11973390_SNP [dm3] X_12079357_SNP [dm6]	C	G	6.242e^-5	0.493	INTRON CR43960 & 1 other
2L	16243653	2L_16243653_SNP [dm3] 2L_16243653_SNP [dm6]	A	G	6.273e^-5	0.493	NON_SYNONYMOUS_CODING CG42818
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	6.276e^-5	0.493	INTRON CG4998	TF binding site mE1_TFBS_cad
3L	10378434	3L_10378434_SNP [dm3] 3L_10385334_SNP [dm6]	G	A	6.342e^-5	0.493	INTERGENIC
X	17166558	X_17166558_SNP [dm3] X_17272525_SNP [dm6]	A	G	6.359e^-5	0.493	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5003172	2L_5003172_SNP [dm3] 2L_5003172_SNP [dm6]	C	T	6.367e^-5	0.493	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	21179564	2L_21179564_SNP [dm3] 2L_21179564_SNP [dm6]	A	G	6.415e^-5	0.493	UTR_5_PRIME bur UPSTREAM Mcm10 EXON CR44911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10387672	3R_10387672_SNP [dm3] 3R_14561950_SNP [dm6]	A	T	6.416e^-5	0.493	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
2L	15438664	2L_15438664_SNP [dm3] 2L_15438664_SNP [dm6]	G	T	6.586e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	6.647e^-5	0.501	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8904638	2L_8904638_DEL [dm3] 2L_8904638_DEL [dm6]	CT	G	6.653e^-5	0.501	INTRON CG34398
3R	22997243	3R_22997243_SNP [dm3] 3R_27171521_SNP [dm6]	C	T	6.697e^-5	0.501	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2L	8526190	2L_8526190_SNP [dm3] 2L_8526190_SNP [dm6]	T	A	6.717e^-5	0.501	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526214	2L_8526214_SNP [dm3] 2L_8526214_SNP [dm6]	A	T	6.717e^-5	0.501	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
X	13296092	X_13296092_SNP [dm3] X_13402059_SNP [dm6]	T	A	6.727e^-5	0.501	UTR_3_PRIME CG12725 DOWNSTREAM CG1673
X	12201684	X_12201684_SNP [dm3] X_12307651_SNP [dm6]	C	G	6.729e^-5	0.501	INTRON Ten-a
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	6.774e^-5	0.501	INTERGENIC
3L	7981165	3L_7981165_SNP [dm3] 3L_7988065_SNP [dm6]	C	G	6.805e^-5	0.501	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	12141949	2L_12141949_SNP [dm3] 2L_12141949_SNP [dm6]	C	A	6.832e^-5	0.501	UPSTREAM CG31760 INTERGENIC
3R	8181448	3R_8181448_SNP [dm3] 3R_12355726_SNP [dm6]	A	T	6.851e^-5	0.501	NON_SYNONYMOUS_CODING MBD-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1964592	2L_1964592_SNP [dm3] 2L_1964592_SNP [dm6]	A	C	6.877e^-5	0.501	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs
2L	2167380	2L_2167380_SNP [dm3] 2L_2167380_SNP [dm6]	T	C	6.912e^-5	0.501	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16363211	2R_16363211_SNP [dm3] 2R_20475706_SNP [dm6]	C	T	6.923e^-5	0.501	INTRON CG12484
3R	15585753	3R_15585753_SNP [dm3] 3R_19760031_SNP [dm6]	T	C	6.985e^-5	0.501	INTRON GluClalpha
3L	9389014	3L_9389014_SNP [dm3] 3L_9395914_SNP [dm6]	A	G	7.099e^-5	0.501	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9783533	2L_9783533_SNP [dm3] 2L_9783533_SNP [dm6]	G	A	7.102e^-5	0.501	INTRON IP3K1	TF binding site mE1_TFBS_sens
3R	7728056	3R_7728056_DEL [dm3] 3R_11902334_DEL [dm6]	TT	T	7.109e^-5	0.501	INTRON Cad87A
2L	5206214	2L_5206214_SNP [dm3] 2L_5206214_SNP [dm6]	T	C	7.138e^-5	0.501	UTR_3_PRIME Msp300 DOWNSTREAM Msp300 EXON snmRNA:158
2R	15475221	2R_15475221_SNP [dm3] 2R_19587716_SNP [dm6]	C	G	7.161e^-5	0.501	UTR_3_PRIME CG42878 INTRON sm
2L	16714981	2L_16714981_INS [dm3] 2L_16714981_INS [dm6]	G	GC	7.225e^-5	0.501	UPSTREAM Cyt-c-d INTRON CG31808
2R	10029875	2R_10029875_SNP [dm3] 2R_14142370_SNP [dm6]	T	A	7.284e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2R	19496794	2R_19496794_SNP [dm3] 2R_23609271_SNP [dm6]	C	G	7.294e^-5	0.501	UPSTREAM CG4019 INTRON CG17664 & 1 other
3L	14486426	3L_14486426_SNP [dm3] 3L_14493326_SNP [dm6]	C	G	7.377e^-5	0.501	INTRON bbg
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	7.385e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12141776	2L_12141776_SNP [dm3] 2L_12141776_SNP [dm6]	C	A	7.426e^-5	0.501	INTERGENIC
3L	18379080	3L_18379080_DEL [dm3] 3L_18385980_DEL [dm6]	TAT	T	7.434e^-5	0.501	INTERGENIC
3R	25909561	3R_25909561_SNP [dm3] 3R_30083839_SNP [dm6]	C	A	7.454e^-5	0.501	INTRON sima	TF binding site mE1_TFBS_Trl
2L	19241531	2L_19241531_SNP [dm3] 2L_19241531_SNP [dm6]	T	C	7.550e^-5	0.501	INTERGENIC
2L	8504943	2L_8504943_SNP [dm3] 2L_8504943_SNP [dm6]	T	C	7.593e^-5	0.501	INTRON Dh31
2R	19961156	2R_19961156_SNP [dm3] 2R_24073633_SNP [dm6]	C	T	7.623e^-5	0.501	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	7.653e^-5	0.501	INTERGENIC
2L	5038210	2L_5038210_SNP [dm3] 2L_5038210_SNP [dm6]	G	A	7.656e^-5	0.501	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555 DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1498291	2L_1498291_SNP [dm3] 2L_1498291_SNP [dm6]	C	G	7.672e^-5	0.501	SYNONYMOUS_CODING CG31661 DOWNSTREAM CG18131	TF binding site mE1_TFBS_HSA
2L	1499918	2L_1499918_SNP [dm3] 2L_1499918_SNP [dm6]	C	T	7.672e^-5	0.501	SYNONYMOUS_CODING CG18131 UPSTREAM CR44064 DOWNSTREAM CG7420
2L	1505811	2L_1505811_SNP [dm3] 2L_1505811_SNP [dm6]	C	T	7.672e^-5	0.501	INTERGENIC
2L	1506264	2L_1506264_SNP [dm3] 2L_1506264_SNP [dm6]	G	C	7.672e^-5	0.501	INTERGENIC
2L	1508021	2L_1508021_SNP [dm3] 2L_1508021_SNP [dm6]	T	C	7.672e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1514481	2L_1514481_SNP [dm3] 2L_1514481_SNP [dm6]	T	A	7.672e^-5	0.501	INTERGENIC
2L	1514778	2L_1514778_SNP [dm3] 2L_1514778_SNP [dm6]	T	A	7.672e^-5	0.501	INTERGENIC
3L	8028134	3L_8028134_SNP [dm3] 3L_8035034_SNP [dm6]	A	G	7.673e^-5	0.501	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5563957	2L_5563957_SNP [dm3] 2L_5563957_SNP [dm6]	G	T	7.685e^-5	0.501	DOWNSTREAM GluRIIB & 1 other INTERGENIC
3L	13382915	3L_13382915_SNP [dm3] 3L_13389815_SNP [dm6]	C	T	7.741e^-5	0.501	NON_SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5962361	3L_5962361_DEL [dm3] 3L_5969261_DEL [dm6]	TTCTGT	T	7.746e^-5	0.501	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	7.803e^-5	0.501	INTERGENIC
2L	5562109	2L_5562109_SNP [dm3] 2L_5562109_SNP [dm6]	T	C	7.851e^-5	0.501	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2R	15563456	2R_15563456_SNP [dm3] 2R_19675951_SNP [dm6]	G	T	7.894e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14362710	2R_14362710_SNP [dm3] 2R_18475205_SNP [dm6]	C	A	7.907e^-5	0.501	INTRON CG30116
2L	5560560	2L_5560560_SNP [dm3] 2L_5560560_SNP [dm6]	A	T	7.919e^-5	0.501	INTRON GluRIIB
2L	16677908	2L_16677908_SNP [dm3] 2L_16677908_SNP [dm6]	A	G	7.926e^-5	0.501	NON_SYNONYMOUS_CODING her UPSTREAM mir-2497	TF binding site mE1_TFBS_sens
2L	6982127	2L_6982127_SNP [dm3] 2L_6982127_SNP [dm6]	G	A	7.954e^-5	0.501	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	10266166	3L_10266166_SNP [dm3] 3L_10273066_SNP [dm6]	C	T	8.041e^-5	0.501	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	6653933	3R_6653933_SNP [dm3] 3R_10828211_SNP [dm6]	T	A	8.060e^-5	0.501	INTRON Cad86C
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	8.066e^-5	0.501	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	8.079e^-5	0.501	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1502385	2L_1502385_SNP [dm3] 2L_1502385_SNP [dm6]	G	C	8.084e^-5	0.501	INTRON CR44064 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	3418748	2R_3418748_SNP [dm3] 2R_7531243_SNP [dm6]	T	C	8.092e^-5	0.501	UPSTREAM Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5960318	3L_5960318_SNP [dm3] 3L_5967218_SNP [dm6]	A	G	8.148e^-5	0.501	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2L	1504352	2L_1504352_SNP [dm3] 2L_1504352_SNP [dm6]	G	C	8.177e^-5	0.501	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	8.214e^-5	0.501	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	8.221e^-5	0.501	INTRON ome	regulatory region REDfly_CRMs
3R	18252651	3R_18252651_SNP [dm3] 3R_22426929_SNP [dm6]	G	C	8.238e^-5	0.501	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	8.249e^-5	0.501	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	13765205	3R_13765205_SNP [dm3] 3R_17939483_SNP [dm6]	C	T	8.289e^-5	0.501	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13765207	3R_13765207_SNP [dm3] 3R_17939485_SNP [dm6]	A	G	8.289e^-5	0.501	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5003188	2L_5003188_SNP [dm3] 2L_5003188_SNP [dm6]	A	G	8.329e^-5	0.501	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	3378521	2L_3378521_SNP [dm3] 2L_3378521_SNP [dm6]	G	A	8.352e^-5	0.501	UTR_3_PRIME Ptpa
2L	5026045	2L_5026045_SNP [dm3] 2L_5026045_SNP [dm6]	G	A	8.386e^-5	0.501	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3303966	2L_3303966_SNP [dm3] 2L_3303966_SNP [dm6]	G	C	8.406e^-5	0.501	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14140502	3L_14140502_SNP [dm3] 3L_14147402_SNP [dm6]	G	T	8.418e^-5	0.501	INTERGENIC	regulatory region REDfly_CRMs
2L	5560554	2L_5560554_DEL [dm3] 2L_5560554_DEL [dm6]	CATA	C	8.499e^-5	0.504	INTRON GluRIIB
2L	5567290	2L_5567290_SNP [dm3] 2L_5567290_SNP [dm6]	G	T	8.553e^-5	0.504	INTERGENIC
2L	5567291	2L_5567291_SNP [dm3] 2L_5567291_SNP [dm6]	G	A	8.553e^-5	0.504	INTERGENIC
3R	23548177	3R_23548177_SNP [dm3] 3R_27722455_SNP [dm6]	T	G	8.695e^-5	0.511	INTERGENIC
X	17166907	X_17166907_SNP [dm3] X_17272874_SNP [dm6]	T	G	8.827e^-5	0.512	INTRON f	TF binding site mE1_TFBS_cad
2L	16286296	2L_16286296_SNP [dm3] 2L_16286296_SNP [dm6]	C	T	8.853e^-5	0.512	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14140506	3L_14140506_SNP [dm3] 3L_14147406_SNP [dm6]	G	A	8.878e^-5	0.512	INTERGENIC	regulatory region REDfly_CRMs
2R	18550406	2R_18550406_SNP [dm3] 2R_22662901_SNP [dm6]	G	A	8.901e^-5	0.512	UPSTREAM CG4250 INTRON CG42566
2R	12562628	2R_12562628_SNP [dm3] 2R_16675123_SNP [dm6]	T	C	8.925e^-5	0.512	INTRON CG30463
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	8.928e^-5	0.512	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	1482341	2L_1482341_SNP [dm3] 2L_1482341_SNP [dm6]	C	A	8.936e^-5	0.512	INTERGENIC
2L	5003153	2L_5003153_SNP [dm3] 2L_5003153_SNP [dm6]	C	G	8.939e^-5	0.512	INTRON Rtnl1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	25304772	3R_25304772_SNP [dm3] 3R_29479050_SNP [dm6]	T	A	8.963e^-5	0.512	UPSTREAM Ptp99A INTRON Ptp99A
2L	13943320	2L_13943320_SNP [dm3] 2L_13943320_SNP [dm6]	A	G	8.975e^-5	0.512	INTRON Ance-3
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	9.086e^-5	0.516	INTRON Osi17
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	9.233e^-5	0.522	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	9.233e^-5	0.522	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
X	3179256	X_3179256_SNP [dm3] X_3285223_SNP [dm6]	T	C	9.274e^-5	0.522	INTRON dnc
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	9.301e^-5	0.522	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	9.350e^-5	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1513859	2L_1513859_SNP [dm3] 2L_1513859_SNP [dm6]	A	C	9.398e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15176639	2L_15176639_SNP [dm3] 2L_15176639_SNP [dm6]	G	A	9.410e^-5	0.522	INTRON CG4168
2L	8529795	2L_8529795_SNP [dm3] 2L_8529795_SNP [dm6]	G	T	9.415e^-5	0.522	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11835415	3R_11835415_SNP [dm3] 3R_16009693_SNP [dm6]	C	T	9.456e^-5	0.523	INTRON GATAe
X	19098921	X_19098921_SNP [dm3] X_19204888_SNP [dm6]	G	A	9.485e^-5	0.523	SYNONYMOUS_CODING Ulp1
2R	8457818	2R_8457818_SNP [dm3] 2R_12570313_SNP [dm6]	C	T	9.552e^-5	0.523	UPSTREAM stil & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3098465	3L_3098465_SNP [dm3] 3L_3098465_SNP [dm6]	T	C	9.569e^-5	0.523	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3R	15591834	3R_15591834_SNP [dm3] 3R_19766112_SNP [dm6]	A	T	9.583e^-5	0.523	INTRON GluClalpha
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	9.584e^-5	0.523	INTERGENIC
X	8918834	X_8918834_SNP [dm3] X_9024801_SNP [dm6]	T	G	9.661e^-5	0.525	SYNONYMOUS_CODING rdgA UTR_3_PRIME rdgA INTRON CR43836 & 1 other
2L	8517405	2L_8517405_SNP [dm3] 2L_8517405_SNP [dm6]	G	T	9.678e^-5	0.525	UPSTREAM CG13090 & 1 other DOWNSTREAM PIG-U INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12414786	3L_12414786_SNP [dm3] 3L_12421686_SNP [dm6]	A	G	9.726e^-5	0.525	DOWNSTREAM toe INTERGENIC
2R	5313732	2R_5313732_SNP [dm3] 2R_9426227_SNP [dm6]	T	G	9.780e^-5	0.525	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17879223	3L_17879223_SNP [dm3] 3L_17886123_SNP [dm6]	G	T	9.797e^-5	0.525	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
2R	20193568	2R_20193568_SNP [dm3] 2R_24306045_SNP [dm6]	G	A	9.799e^-5	0.525	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14105496	3R_14105496_SNP [dm3] 3R_18279774_SNP [dm6]	T	A	9.820e^-5	0.525	UPSTREAM CG7142 INTRON eIF-1A
2L	10626424	2L_10626424_SNP [dm3] 2L_10626424_SNP [dm6]	G	T	9.867e^-5	0.525	INTRON Trim9
2R	14662730	2R_14662730_SNP [dm3] 2R_18775225_SNP [dm6]	C	G	9.891e^-5	0.525	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	9.903e^-5	0.525	INTRON fne
3L	2370943	3L_2370943_SNP [dm3] 3L_2370943_SNP [dm6]	G	A	1.003e^-4	0.529	SYNONYMOUS_CODING CG1317	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17370851	2R_17370851_SNP [dm3] 2R_21483346_SNP [dm6]	C	T	1.008e^-4	0.529	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7263751	2L_7263751_SNP [dm3] 2L_7263751_SNP [dm6]	C	T	1.009e^-4	0.529	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9298450	3R_9298450_SNP [dm3] 3R_13472728_SNP [dm6]	T	C	1.016e^-4	0.529	INTERGENIC
3L	5342433	3L_5342433_SNP [dm3] 3L_5349333_SNP [dm6]	T	A	1.018e^-4	0.529	INTRON lama
2L	21179802	2L_21179802_SNP [dm3] 2L_21179802_SNP [dm6]	T	A	1.019e^-4	0.529	UPSTREAM Mcm10 & 1 other DOWNSTREAM CR44911 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14662727	2R_14662727_SNP [dm3] 2R_18775222_SNP [dm6]	A	C	1.020e^-4	0.529	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	1.021e^-4	0.529	INTRON fne
2L	3521376	2L_3521376_SNP [dm3] 2L_3521376_SNP [dm6]	G	A	1.029e^-4	0.532	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14140537	3L_14140537_SNP [dm3] 3L_14147437_SNP [dm6]	T	C	1.035e^-4	0.532	INTERGENIC	regulatory region REDfly_CRMs
X	12202203	X_12202203_SNP [dm3] X_12308170_SNP [dm6]	T	C	1.035e^-4	0.532	INTRON Ten-a
2L	16232878	2L_16232878_SNP [dm3] 2L_16232878_SNP [dm6]	G	A	1.039e^-4	0.532	INTRON CG42817
3L	18304720	3L_18304720_SNP [dm3] 3L_18311620_SNP [dm6]	C	T	1.042e^-4	0.533	INTERGENIC
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	1.047e^-4	0.533	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2R	8499995	2R_8499995_SNP [dm3] 2R_12612490_SNP [dm6]	T	G	1.054e^-4	0.534	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	17840876	3R_17840876_SNP [dm3] 3R_22015154_SNP [dm6]	A	G	1.055e^-4	0.534	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	18292477	2R_18292477_SNP [dm3] 2R_22404972_SNP [dm6]	G	A	1.058e^-4	0.534	INTRON CG6044	TF binding site mE1_TFBS_Trl
2L	8533459	2L_8533459_SNP [dm3] 2L_8533459_SNP [dm6]	A	G	1.060e^-4	0.534	INTRON CG17834	TF binding site mE1_TFBS_cad
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	1.069e^-4	0.536	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	1.069e^-4	0.536	INTRON dpr13
2L	4687381	2L_4687381_SNP [dm3] 2L_4687381_SNP [dm6]	G	A	1.076e^-4	0.538	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.082e^-4	0.54	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	9123769	2R_9123769_SNP [dm3] 2R_13236264_SNP [dm6]	C	A	1.089e^-4	0.541	UPSTREAM CG4670 DOWNSTREAM CG4679 INTRON CG4676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24990935	3R_24990935_SNP [dm3] 3R_29165213_SNP [dm6]	A	G	1.091e^-4	0.541	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3L	5568061	3L_5568061_SNP [dm3] 3L_5574961_SNP [dm6]	T	C	1.103e^-4	0.542	SYNONYMOUS_CODING Msr-110 INTRON Msr-110
2R	14662593	2R_14662593_SNP [dm3] 2R_18775088_SNP [dm6]	C	T	1.104e^-4	0.542	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7957353	2L_7957353_SNP [dm3] 2L_7957353_SNP [dm6]	G	T	1.111e^-4	0.542	INTRON Snoo
2R	18598070	2R_18598070_SNP [dm3] 2R_22710565_SNP [dm6]	G	A	1.112e^-4	0.542	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275	TF binding site mE1_TFBS_sens
2R	18088573	2R_18088573_SNP [dm3] 2R_22201068_SNP [dm6]	G	A	1.116e^-4	0.542	UPSTREAM CR45376 INTRON Swim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8028076	2L_8028076_SNP [dm3] 2L_8028076_SNP [dm6]	C	A	1.118e^-4	0.542	SYNONYMOUS_CODING CG7367
3L	4242659	3L_4242659_SNP [dm3] 3L_4242659_SNP [dm6]	G	C	1.123e^-4	0.542	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	5423850	3L_5423850_SNP [dm3] 3L_5430750_SNP [dm6]	G	A	1.126e^-4	0.542	INTRON CG34391
2L	5560612	2L_5560612_SNP [dm3] 2L_5560612_SNP [dm6]	C	T	1.130e^-4	0.542	INTRON GluRIIB
2L	3128321	2L_3128321_SNP [dm3] 2L_3128321_SNP [dm6]	C	A	1.130e^-4	0.542	UPSTREAM CG15403 INTRON toc
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	1.130e^-4	0.542	INTRON Dh31
3R	25563014	3R_25563014_SNP [dm3] 3R_29737292_SNP [dm6]	C	T	1.131e^-4	0.542	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3R	25563253	3R_25563253_SNP [dm3] 3R_29737531_SNP [dm6]	T	G	1.131e^-4	0.542	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17158672	X_17158672_SNP [dm3] X_17264639_SNP [dm6]	G	A	1.133e^-4	0.542	UPSTREAM f INTRON f
3R	22997258	3R_22997258_SNP [dm3] 3R_27171536_SNP [dm6]	C	T	1.150e^-4	0.549	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2L	5560580	2L_5560580_SNP [dm3] 2L_5560580_SNP [dm6]	A	T	1.160e^-4	0.552	INTRON GluRIIB
X	7989313	X_7989313_SNP [dm3] X_8095280_SNP [dm6]	A	T	1.162e^-4	0.552	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
3L	12841582	3L_12841582_SNP [dm3] 3L_12848482_SNP [dm6]	C	T	1.170e^-4	0.552	SYNONYMOUS_CODING CG10948	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10625844	2R_10625844_SNP [dm3] 2R_14738339_SNP [dm6]	C	A	1.171e^-4	0.552	EXON CR43428
X	7261077	X_7261077_INS [dm3] X_7367044_INS [dm6]	A	AA	1.177e^-4	0.552	INTRON CG1677 & 1 other
2L	493966	2L_493966_SNP [dm3] 2L_493966_SNP [dm6]	A	G	1.177e^-4	0.552	INTRON ush
3R	19865529	3R_19865529_SNP [dm3] 3R_24039807_SNP [dm6]	A	T	1.178e^-4	0.552	UPSTREAM Miro INTRON spas	TF binding site mE1_TFBS_cad
2R	8499965	2R_8499965_SNP [dm3] 2R_12612460_SNP [dm6]	A	G	1.183e^-4	0.553	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	15475210	2R_15475210_SNP [dm3] 2R_19587705_SNP [dm6]	G	A	1.186e^-4	0.553	UTR_3_PRIME CG42878 INTRON sm
X	4832505	X_4832505_SNP [dm3] X_4938472_SNP [dm6]	A	G	1.194e^-4	0.554	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8508450	2L_8508450_SNP [dm3] 2L_8508450_SNP [dm6]	A	C	1.194e^-4	0.554	DOWNSTREAM CG13096 INTERGENIC
2L	16724940	2L_16724940_SNP [dm3] 2L_16724940_SNP [dm6]	C	A	1.198e^-4	0.554	SYNONYMOUS_CODING VhaSFD UPSTREAM mir-1006	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6913150	3L_6913150_SNP [dm3] 3L_6920050_SNP [dm6]	C	A	1.200e^-4	0.554	INTERGENIC
2R	20019440	2R_20019440_SNP [dm3] 2R_24131917_SNP [dm6]	G	A	1.208e^-4	0.556	UPSTREAM tamo INTRON tamo
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	1.209e^-4	0.556	INTERGENIC
2L	13112978	2L_13112978_SNP [dm3] 2L_13112978_SNP [dm6]	A	T	1.216e^-4	0.556	INTERGENIC
3R	14103149	3R_14103149_SNP [dm3] 3R_18277427_SNP [dm6]	A	G	1.216e^-4	0.556	DOWNSTREAM CG7142 INTRON eIF-1A
3R	19920298	3R_19920298_SNP [dm3] 3R_24094576_SNP [dm6]	G	A	1.223e^-4	0.558	INTRON 4EHP
2L	5699958	2L_5699958_SNP [dm3] 2L_5699958_SNP [dm6]	G	T	1.228e^-4	0.559	INTERGENIC
3L	4242700	3L_4242700_SNP [dm3] 3L_4242700_SNP [dm6]	G	A	1.236e^-4	0.56	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9318928	3L_9318928_SNP [dm3] 3L_9325828_SNP [dm6]	G	C	1.237e^-4	0.56	INTERGENIC
2R	8499771	2R_8499771_SNP [dm3] 2R_12612266_SNP [dm6]	T	C	1.240e^-4	0.56	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	2580216	3L_2580216_SNP [dm3] 3L_2580216_SNP [dm6]	C	T	1.247e^-4	0.562	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21179520	2L_21179520_SNP [dm3] 2L_21179520_SNP [dm6]	C	A	1.256e^-4	0.564	UTR_5_PRIME bur UPSTREAM Mcm10 EXON CR44911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18379208	3L_18379208_SNP [dm3] 3L_18386108_SNP [dm6]	T	G	1.258e^-4	0.564	INTERGENIC
2R	15658335	2R_15658335_DEL [dm3] 2R_19770830_DEL [dm6]	TAA	T	1.266e^-4	0.566	INTRON Or56a
3L	1403704	3L_1403704_SNP [dm3] 3L_1403704_SNP [dm6]	C	A	1.267e^-4	0.566	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	5699959	2L_5699959_SNP [dm3] 2L_5699959_SNP [dm6]	A	G	1.276e^-4	0.568	INTERGENIC
2L	5567510	2L_5567510_INS [dm3] 2L_5567510_INS [dm6]	C	CTCTATAGCCC...	1.277e^-4	0.568	INTERGENIC
2R	16967976	2R_16967976_SNP [dm3] 2R_21080471_SNP [dm6]	A	G	1.290e^-4	0.571	UPSTREAM Treh INTRON Treh
2R	16968011	2R_16968011_SNP [dm3] 2R_21080506_SNP [dm6]	G	T	1.290e^-4	0.571	UPSTREAM Treh INTRON Treh
2L	3377729	2L_3377729_SNP [dm3] 2L_3377729_SNP [dm6]	C	A	1.298e^-4	0.571	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	1.300e^-4	0.571	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26926104	3R_26926104_SNP [dm3] 3R_31100382_SNP [dm6]	T	C	1.305e^-4	0.571	NON_SYNONYMOUS_CODING CG15553
2R	5313884	2R_5313884_SNP [dm3] 2R_9426379_SNP [dm6]	T	C	1.306e^-4	0.571	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3505633	2L_3505633_SNP [dm3] 2L_3505633_SNP [dm6]	T	G	1.307e^-4	0.571	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16543927	2L_16543927_DEL [dm3] 2L_16543927_DEL [dm6]	TCAAGTTATT	T	1.318e^-4	0.571	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12141897	2L_12141897_DEL [dm3] 2L_12141897_DEL [dm6]	TC	A	1.318e^-4	0.571	UPSTREAM CG31760 INTERGENIC
2L	5567267	2L_5567267_SNP [dm3] 2L_5567267_SNP [dm6]	G	A	1.320e^-4	0.571	INTERGENIC
3L	10723880	3L_10723880_SNP [dm3] 3L_10730780_SNP [dm6]	T	G	1.322e^-4	0.571	INTERGENIC
2L	13925332	2L_13925332_SNP [dm3] 2L_13925332_SNP [dm6]	G	T	1.323e^-4	0.571	INTRON Ance-3
2R	8457068	2R_8457068_SNP [dm3] 2R_12569563_SNP [dm6]	T	C	1.324e^-4	0.571	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10445864	3L_10445864_SNP [dm3] 3L_10452764_SNP [dm6]	A	C	1.327e^-4	0.571	INTERGENIC
X	12837803	X_12837803_SNP [dm3] X_12943770_SNP [dm6]	T	C	1.331e^-4	0.571	INTRON fne
2L	8529982	2L_8529982_SNP [dm3] 2L_8529982_SNP [dm6]	A	T	1.334e^-4	0.571	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	17324953	2L_17324953_SNP [dm3] 2L_17324953_SNP [dm6]	C	T	1.342e^-4	0.573	INTERGENIC
3L	5962136	3L_5962136_SNP [dm3] 3L_5969036_SNP [dm6]	G	T	1.357e^-4	0.574	SYNONYMOUS_CODING CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	3348267	2L_3348267_SNP [dm3] 2L_3348267_SNP [dm6]	T	G	1.358e^-4	0.574	INTRON E23
2L	9102280	2L_9102280_SNP [dm3] 2L_9102280_SNP [dm6]	T	A	1.358e^-4	0.574	INTERGENIC
2R	16693693	2R_16693693_DEL [dm3] 2R_20806188_DEL [dm6]	TAA	T	1.360e^-4	0.574	INTERGENIC
X	14434953	X_14434953_DEL [dm3] X_14540920_DEL [dm6]	TCA	T	1.362e^-4	0.574	EXON CR45521
X	7982396	X_7982396_SNP [dm3] X_8088363_SNP [dm6]	T	A	1.363e^-4	0.574	UTR_3_PRIME Ubc-E2H
3R	13765188	3R_13765188_SNP [dm3] 3R_17939466_SNP [dm6]	G	T	1.364e^-4	0.574	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16287621	2L_16287621_SNP [dm3] 2L_16287621_SNP [dm6]	G	T	1.370e^-4	0.574	UTR_5_PRIME crp UPSTREAM pkaap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
3L	5962394	3L_5962394_SNP [dm3] 3L_5969294_SNP [dm6]	C	T	1.374e^-4	0.574	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	25565501	3R_25565501_SNP [dm3] 3R_29739779_SNP [dm6]	A	G	1.375e^-4	0.574	UTR_5_PRIME CG1969 UPSTREAM CG1969	TF binding site BDTNP1_TFBS_dl
3R	7728095	3R_7728095_SNP [dm3] 3R_11902373_SNP [dm6]	T	C	1.395e^-4	0.58	INTRON Cad87A
2R	7775676	2R_7775676_SNP [dm3] 2R_11888171_SNP [dm6]	C	T	1.397e^-4	0.58	SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8494551	2L_8494551_SNP [dm3] 2L_8494551_SNP [dm6]	C	A	1.408e^-4	0.58	DOWNSTREAM Bace INTRON Dh31
2L	3475220	2L_3475220_SNP [dm3] 2L_3475220_SNP [dm6]	A	C	1.409e^-4	0.58	UTR_3_PRIME pgant4 UPSTREAM CR45372
2L	13907381	2L_13907381_SNP [dm3] 2L_13907381_SNP [dm6]	G	T	1.410e^-4	0.58	INTRON Ance
2L	8525866	2L_8525866_INS [dm3] 2L_8525866_INS [dm6]	T	TTCGCTTTTT	1.413e^-4	0.58	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer & 2 others
2L	1510352	2L_1510352_SNP [dm3] 2L_1510352_SNP [dm6]	G	T	1.413e^-4	0.58	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15589014	3R_15589014_SNP [dm3] 3R_19763292_SNP [dm6]	A	G	1.414e^-4	0.58	INTRON GluClalpha
3R	25066593	3R_25066593_SNP [dm3] 3R_29240871_SNP [dm6]	C	A	1.418e^-4	0.581	NON_SYNONYMOUS_CODING CG31445 UPSTREAM CG31427
2R	14662799	2R_14662799_SNP [dm3] 2R_18775294_SNP [dm6]	C	A	1.437e^-4	0.585	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	1.441e^-4	0.585	UPSTREAM mir-276a EXON CR44327
3L	19420793	3L_19420793_SNP [dm3] 3L_19427693_SNP [dm6]	G	A	1.444e^-4	0.585	INTERGENIC
2L	5560599	2L_5560599_SNP [dm3] 2L_5560599_SNP [dm6]	C	A	1.445e^-4	0.585	INTRON GluRIIB
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	1.446e^-4	0.585	INTERGENIC
X	2759571	X_2759571_SNP [dm3] X_2865538_SNP [dm6]	C	T	1.453e^-4	0.585	INTRON kirre
X	3020162	X_3020162_SNP [dm3] X_3126129_SNP [dm6]	A	G	1.460e^-4	0.585	INTRON kirre
3R	14597115	3R_14597115_SNP [dm3] 3R_18771393_SNP [dm6]	A	G	1.466e^-4	0.585	INTRON CG7720
2L	9805720	2L_9805720_SNP [dm3] 2L_9805720_SNP [dm6]	C	T	1.466e^-4	0.585	INTRON nAChRalpha6	TF binding site mE1_TFBS_sens
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	1.468e^-4	0.585	DOWNSTREAM Ir60a INTRON nord
2R	10625845	2R_10625845_SNP [dm3] 2R_14738340_SNP [dm6]	A	T	1.468e^-4	0.585	EXON CR43428
3L	849231	3L_849231_SNP [dm3] 3L_849231_SNP [dm6]	C	T	1.470e^-4	0.585	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17840888	3R_17840888_SNP [dm3] 3R_22015166_SNP [dm6]	G	T	1.474e^-4	0.585	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	1.474e^-4	0.585	INTERGENIC
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	1.476e^-4	0.585	INTRON CG9663
X	18233411	X_18233411_SNP [dm3] X_18339378_SNP [dm6]	C	T	1.479e^-4	0.585	INTRON CG6123
2R	10574659	2R_10574659_SNP [dm3] 2R_14687154_SNP [dm6]	A	C	1.497e^-4	0.591	INTRON mspo
2L	7984754	2L_7984754_SNP [dm3] 2L_7984754_SNP [dm6]	G	A	1.506e^-4	0.592	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3657858	2L_3657858_SNP [dm3] 2L_3657858_SNP [dm6]	G	T	1.508e^-4	0.592	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	19737729	X_19737729_SNP [dm3] X_19843696_SNP [dm6]	A	G	1.521e^-4	0.592	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	26471854	3R_26471854_SNP [dm3] 3R_30646132_SNP [dm6]	G	T	1.521e^-4	0.592	UTR_3_PRIME PH4alphaPV UPSTREAM CG31013
2R	7775518	2R_7775518_SNP [dm3] 2R_11888013_SNP [dm6]	C	G	1.522e^-4	0.592	NON_SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff
3R	25909563	3R_25909563_SNP [dm3] 3R_30083841_SNP [dm6]	C	A	1.523e^-4	0.592	INTRON sima	TF binding site mE1_TFBS_Trl
2L	3286335	2L_3286335_SNP [dm3] 2L_3286335_SNP [dm6]	G	T	1.526e^-4	0.592	INTERGENIC
3R	1283518	3R_1283518_SNP [dm3] 3R_5457796_SNP [dm6]	C	A	1.527e^-4	0.592	UTR_3_PRIME CG14669 DOWNSTREAM PEK & 1 other
2L	12724589	2L_12724589_SNP [dm3] 2L_12724589_SNP [dm6]	C	T	1.531e^-4	0.592	SYNONYMOUS_CODING MRP INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10619806	2R_10619806_SNP [dm3] 2R_14732301_SNP [dm6]	T	A	1.535e^-4	0.592	INTERGENIC
X	7989126	X_7989126_DEL [dm3] X_8095093_DEL [dm6]	CT	C	1.535e^-4	0.592	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	1.539e^-4	0.592	INTRON Dh31
3R	25145604	3R_25145604_SNP [dm3] 3R_29319882_SNP [dm6]	A	C	1.540e^-4	0.592	UPSTREAM Cnx99A INTERGENIC
X	13672260	X_13672260_SNP [dm3] X_13778227_SNP [dm6]	A	G	1.549e^-4	0.592	UTR_3_PRIME rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	22058067	X_22058067_SNP [dm3] X_22656231_SNP [dm6]	G	T	1.551e^-4	0.592	INTERGENIC
2L	8490788	2L_8490788_SNP [dm3] 2L_8490788_SNP [dm6]	T	C	1.556e^-4	0.592	UTR_5_PRIME CG43400 DOWNSTREAM CG13088
3L	13383275	3L_13383275_SNP [dm3] 3L_13390175_SNP [dm6]	T	A	1.559e^-4	0.592	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6653660	3R_6653660_SNP [dm3] 3R_10827938_SNP [dm6]	G	A	1.560e^-4	0.592	UTR_5_PRIME Cad86C INTRON Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	22058066	X_22058066_SNP [dm3] X_22656230_SNP [dm6]	G	T	1.562e^-4	0.592	INTERGENIC
2L	5563810	2L_5563810_INS [dm3] 2L_5563810_INS [dm6]	C	ACATG	1.563e^-4	0.592	DOWNSTREAM GluRIIB INTERGENIC
3L	18564828	3L_18564828_SNP [dm3] 3L_18571728_SNP [dm6]	T	C	1.565e^-4	0.592	INTRON AstC-R1
2L	4016384	2L_4016384_SNP [dm3] 2L_4016384_SNP [dm6]	A	C	1.569e^-4	0.592	INTERGENIC
X	17166384	X_17166384_SNP [dm3] X_17272351_SNP [dm6]	T	C	1.572e^-4	0.592	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15763302	2L_15763302_SNP [dm3] 2L_15763302_SNP [dm6]	G	A	1.580e^-4	0.594	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12728181	2L_12728181_SNP [dm3] 2L_12728181_SNP [dm6]	C	T	1.593e^-4	0.595	SYNONYMOUS_CODING MRP INTRON MRP
2L	5329377	2L_5329377_SNP [dm3] 2L_5329377_SNP [dm6]	T	A	1.595e^-4	0.595	UPSTREAM CG14022 & 1 other INTERGENIC
3R	23548187	3R_23548187_SNP [dm3] 3R_27722465_SNP [dm6]	C	A	1.596e^-4	0.595	INTERGENIC
2L	7112914	2L_7112914_SNP [dm3] 2L_7112914_SNP [dm6]	C	T	1.598e^-4	0.595	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
2L	13829796	2L_13829796_SNP [dm3] 2L_13829796_SNP [dm6]	G	A	1.600e^-4	0.595	UPSTREAM Orc5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9375065	2L_9375065_SNP [dm3] 2L_9375065_SNP [dm6]	T	G	1.605e^-4	0.596	INTRON Shawl
2L	9374285	2L_9374285_DEL [dm3] 2L_9374285_DEL [dm6]	GTTAG	G	1.610e^-4	0.597	DOWNSTREAM CR43865 INTRON Shawl
2L	7384404	2L_7384404_SNP [dm3] 2L_7384404_SNP [dm6]	T	A	1.621e^-4	0.599	DOWNSTREAM CG5149 & 1 other INTERGENIC
3R	15581200	3R_15581200_DEL [dm3] 3R_19755478_DEL [dm6]	ATTTGTTCATACCACACATT...	A	1.622e^-4	0.599	INTRON GluClalpha
3L	4243101	3L_4243101_SNP [dm3] 3L_4243101_SNP [dm6]	A	G	1.638e^-4	0.604	SYNONYMOUS_CODING pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	5152357	X_5152357_SNP [dm3] X_5258324_SNP [dm6]	A	G	1.649e^-4	0.607	INTERGENIC
2R	9139434	2R_9139434_SNP [dm3] 2R_13251929_SNP [dm6]	A	C	1.657e^-4	0.608	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
X	3558355	X_3558355_SNP [dm3] X_3664322_SNP [dm6]	G	A	1.666e^-4	0.61	INTRON AstA-R1
2L	8525759	2L_8525759_SNP [dm3] 2L_8525759_SNP [dm6]	C	A	1.670e^-4	0.61	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer & 2 others
3R	23558539	3R_23558539_SNP [dm3] 3R_27732817_SNP [dm6]	C	T	1.684e^-4	0.613	INTERGENIC
3R	2217085	3R_2217085_SNP [dm3] 3R_6391363_SNP [dm6]	C	T	1.684e^-4	0.613	SYNONYMOUS_CODING Dmtn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12199681	X_12199681_DEL [dm3] X_12305648_DEL [dm6]	CCAACCCAACAAC...	C	1.689e^-4	0.614	INTRON Ten-a
2L	5329370	2L_5329370_SNP [dm3] 2L_5329370_SNP [dm6]	T	C	1.705e^-4	0.614	UPSTREAM CG14022 & 1 other INTERGENIC
X	17164735	X_17164735_SNP [dm3] X_17270702_SNP [dm6]	A	T	1.705e^-4	0.614	INTRON f
2L	2047168	2L_2047168_SNP [dm3] 2L_2047168_SNP [dm6]	T	A	1.713e^-4	0.614	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10377570	3L_10377570_SNP [dm3] 3L_10384470_SNP [dm6]	G	A	1.723e^-4	0.614	INTERGENIC
3L	16924704	3L_16924704_SNP [dm3] 3L_16931604_SNP [dm6]	T	C	1.724e^-4	0.614	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2L	3861573	2L_3861573_SNP [dm3] 2L_3861573_SNP [dm6]	C	A	1.727e^-4	0.614	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	3861593	2L_3861593_SNP [dm3] 2L_3861593_SNP [dm6]	C	G	1.727e^-4	0.614	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	3861596	2L_3861596_SNP [dm3] 2L_3861596_SNP [dm6]	A	G	1.727e^-4	0.614	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	3861609	2L_3861609_SNP [dm3] 2L_3861609_SNP [dm6]	G	C	1.727e^-4	0.614	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	10282117	X_10282117_INS [dm3] X_10388084_INS [dm6]	G	CA	1.728e^-4	0.614	INTRON flw	TF binding site BDTNP1_TFBS_twi
2R	15656421	2R_15656421_SNP [dm3] 2R_19768916_SNP [dm6]	T	C	1.733e^-4	0.614	DOWNSTREAM Or56a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	5206206	2L_5206206_SNP [dm3] 2L_5206206_SNP [dm6]	C	T	1.739e^-4	0.614	UTR_3_PRIME Msp300 DOWNSTREAM Msp300 EXON snmRNA:158
2L	15763329	2L_15763329_SNP [dm3] 2L_15763329_SNP [dm6]	A	G	1.740e^-4	0.614	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3421300	2L_3421300_SNP [dm3] 2L_3421300_SNP [dm6]	G	C	1.742e^-4	0.614	INTRON pgant2
3R	22199837	3R_22199837_SNP [dm3] 3R_26374115_SNP [dm6]	T	C	1.742e^-4	0.614	INTERGENIC
3L	6065517	3L_6065517_SNP [dm3] 3L_6072417_SNP [dm6]	C	A	1.744e^-4	0.614	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_sens
3L	6065543	3L_6065543_SNP [dm3] 3L_6072443_SNP [dm6]	G	T	1.744e^-4	0.614	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22142683	3R_22142683_SNP [dm3] 3R_26316961_SNP [dm6]	G	C	1.755e^-4	0.614	INTERGENIC
2L	13072556	2L_13072556_SNP [dm3] 2L_13072556_SNP [dm6]	A	G	1.759e^-4	0.614	INTERGENIC
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	1.759e^-4	0.614	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	7957345	2L_7957345_SNP [dm3] 2L_7957345_SNP [dm6]	T	C	1.762e^-4	0.614	INTRON Snoo
2L	14677156	2L_14677156_SNP [dm3] 2L_14677156_SNP [dm6]	T	G	1.769e^-4	0.614	INTRON osp
2L	13070975	2L_13070975_SNP [dm3] 2L_13070975_SNP [dm6]	A	G	1.771e^-4	0.614	INTERGENIC
2L	1946565	2L_1946565_SNP [dm3] 2L_1946565_SNP [dm6]	C	T	1.773e^-4	0.614	SYNONYMOUS_CODING CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
3L	4145364	3L_4145364_SNP [dm3] 3L_4145364_SNP [dm6]	G	T	1.775e^-4	0.614	INTRON CG32260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4863515	2L_4863515_SNP [dm3] 2L_4863515_SNP [dm6]	T	C	1.777e^-4	0.614	INTRON pog
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	1.778e^-4	0.614	INTRON fne
3L	6502168	3L_6502168_SNP [dm3] 3L_6509068_SNP [dm6]	C	T	1.781e^-4	0.614	INTRON sfl
2L	5567225	2L_5567225_SNP [dm3] 2L_5567225_SNP [dm6]	G	T	1.785e^-4	0.614	INTERGENIC
3L	11912960	3L_11912960_SNP [dm3] 3L_11919860_SNP [dm6]	A	G	1.786e^-4	0.614	INTRON CG44837
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	1.790e^-4	0.614	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
X	8642616	X_8642616_SNP [dm3] X_8748583_SNP [dm6]	G	A	1.805e^-4	0.618	INTERGENIC
X	14434973	X_14434973_SNP [dm3] X_14540940_SNP [dm6]	A	G	1.811e^-4	0.619	EXON CR45521
2L	2024780	2L_2024780_SNP [dm3] 2L_2024780_SNP [dm6]	T	G	1.817e^-4	0.619	INTRON CG4238
2L	12722329	2L_12722329_SNP [dm3] 2L_12722329_SNP [dm6]	C	G	1.819e^-4	0.619	START_GAINED MRP UTR_5_PRIME MRP UPSTREAM CG5792 INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26097115	3R_26097115_SNP [dm3] 3R_30271393_SNP [dm6]	G	A	1.825e^-4	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6065530	3L_6065530_SNP [dm3] 3L_6072430_SNP [dm6]	T	G	1.830e^-4	0.62	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8537937	2L_8537937_SNP [dm3] 2L_8537937_SNP [dm6]	T	A	1.832e^-4	0.62	DOWNSTREAM CG17834 INTRON CG17834
2L	17332882	2L_17332882_SNP [dm3] 2L_17332882_SNP [dm6]	G	A	1.833e^-4	0.62	INTERGENIC
2L	5565521	2L_5565521_SNP [dm3] 2L_5565521_SNP [dm6]	C	T	1.846e^-4	0.621	UPSTREAM snRNA:U4:25F EXON CR44794	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	16823304	3R_16823304_SNP [dm3] 3R_20997582_SNP [dm6]	T	G	1.848e^-4	0.621	INTRON Calx
2R	5007060	2R_5007060_SNP [dm3] 2R_9119555_SNP [dm6]	G	A	1.849e^-4	0.621	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
3L	11060379	3L_11060379_SNP [dm3] 3L_11067279_SNP [dm6]	G	A	1.854e^-4	0.621	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
2R	12627925	2R_12627925_SNP [dm3] 2R_16740420_SNP [dm6]	G	A	1.856e^-4	0.621	INTERGENIC
2R	16177979	2R_16177979_SNP [dm3] 2R_20290474_SNP [dm6]	C	T	1.857e^-4	0.621	UTR_3_PRIME CkIIbeta2 INTRON Cpr56F
3L	20727174	3L_20727174_SNP [dm3] 3L_20734074_SNP [dm6]	C	G	1.861e^-4	0.621	INTRON CG13252
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	1.873e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3439679	X_3439679_SNP [dm3] X_3545646_SNP [dm6]	G	A	1.877e^-4	0.623	DOWNSTREAM CR34335 INTRON CG32791
2L	5003160	2L_5003160_DEL [dm3] 2L_5003160_DEL [dm6]	AG	A	1.881e^-4	0.623	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	8793286	3L_8793286_SNP [dm3] 3L_8800186_SNP [dm6]	G	C	1.886e^-4	0.623	SYNONYMOUS_CODING CG13310	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3392848	2L_3392848_SNP [dm3] 2L_3392848_SNP [dm6]	C	A	1.887e^-4	0.623	INTERGENIC
3R	8073753	3R_8073753_DEL [dm3] 3R_12248031_DEL [dm6]	CTGGGC	C	1.891e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	18550394	2R_18550394_SNP [dm3] 2R_22662889_SNP [dm6]	T	C	1.893e^-4	0.623	UPSTREAM CG4250 INTRON CG42566
2L	12573175	2L_12573175_SNP [dm3] 2L_12573175_SNP [dm6]	A	G	1.894e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5028269	X_5028269_SNP [dm3] X_5134236_SNP [dm6]	A	T	1.900e^-4	0.624	INTRON rg & 1 other
2L	3348272	2L_3348272_SNP [dm3] 2L_3348272_SNP [dm6]	A	G	1.911e^-4	0.626	INTRON E23
3R	4903559	3R_4903559_SNP [dm3] 3R_9077837_SNP [dm6]	C	T	1.914e^-4	0.626	INTRON pum
2R	14662526	2R_14662526_SNP [dm3] 2R_18775021_SNP [dm6]	T	G	1.914e^-4	0.626	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5560582	2L_5560582_SNP [dm3] 2L_5560582_SNP [dm6]	G	T	1.928e^-4	0.629	INTRON GluRIIB
3R	25066646	3R_25066646_SNP [dm3] 3R_29240924_SNP [dm6]	C	G	1.936e^-4	0.629	SYNONYMOUS_CODING CG31445 UPSTREAM CG31427
3R	7115019	3R_7115019_SNP [dm3] 3R_11289297_SNP [dm6]	T	C	1.938e^-4	0.629	INTRON CR31386
2L	3310270	2L_3310270_SNP [dm3] 2L_3310270_SNP [dm6]	A	T	1.939e^-4	0.629	INTRON CG3277 & 1 other
3L	4242680	3L_4242680_SNP [dm3] 3L_4242680_SNP [dm6]	A	T	1.955e^-4	0.633	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1537274	2L_1537274_SNP [dm3] 2L_1537274_SNP [dm6]	T	G	1.988e^-4	0.643	INTERGENIC
3R	7728082	3R_7728082_INS [dm3] 3R_11902360_INS [dm6]	A	AA	2.003e^-4	0.646	INTRON Cad87A
2L	15206499	2L_15206499_SNP [dm3] 2L_15206499_SNP [dm6]	T	C	2.006e^-4	0.646	INTERGENIC
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	2.007e^-4	0.646	SYNONYMOUS_CODING CG15570
X	8796211	X_8796211_SNP [dm3] X_8902178_SNP [dm6]	G	A	2.011e^-4	0.646	SYNONYMOUS_CODING Rbm13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6372864	3R_6372864_SNP [dm3] 3R_10547142_SNP [dm6]	C	T	2.018e^-4	0.647	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15763214	2L_15763214_SNP [dm3] 2L_15763214_SNP [dm6]	C	A	2.024e^-4	0.647	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19412254	3L_19412254_SNP [dm3] 3L_19419154_SNP [dm6]	A	T	2.033e^-4	0.647	INTERGENIC
2R	8638671	2R_8638671_SNP [dm3] 2R_12751166_SNP [dm6]	A	T	2.037e^-4	0.647	UTR_3_PRIME CG42663 DOWNSTREAM mos
3R	14524115	3R_14524115_SNP [dm3] 3R_18698393_SNP [dm6]	G	T	2.046e^-4	0.647	INTERGENIC
X	5262872	X_5262872_SNP [dm3] X_5368839_SNP [dm6]	G	A	2.051e^-4	0.647	INTRON SK
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	2.051e^-4	0.647	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	6234911	2L_6234911_SNP [dm3] 2L_6234911_SNP [dm6]	G	A	2.053e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	14662687	2R_14662687_SNP [dm3] 2R_18775182_SNP [dm6]	T	C	2.060e^-4	0.647	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1989529	2L_1989529_SNP [dm3] 2L_1989529_SNP [dm6]	C	T	2.062e^-4	0.647	DOWNSTREAM Npc2a EXON CR42874
2R	20019221	2R_20019221_SNP [dm3] 2R_24131698_SNP [dm6]	T	A	2.067e^-4	0.647	UTR_5_PRIME tamo INTRON tamo
2R	5313925	2R_5313925_SNP [dm3] 2R_9426420_SNP [dm6]	G	A	2.076e^-4	0.647	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20022989	2R_20022989_SNP [dm3] 2R_24135466_SNP [dm6]	G	T	2.081e^-4	0.647	SYNONYMOUS_CODING CG4065 DOWNSTREAM Zfrp8
X	7989124	X_7989124_SNP [dm3] X_8095091_SNP [dm6]	C	T	2.081e^-4	0.647	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
3R	3429613	3R_3429613_SNP [dm3] 3R_7603891_SNP [dm6]	T	C	2.084e^-4	0.647	UTR_5_PRIME CG34127
2R	11865013	2R_11865013_SNP [dm3] 2R_15977508_SNP [dm6]	T	A	2.084e^-4	0.647	NON_SYNONYMOUS_CODING Strn-Mlck
3R	22896879	3R_22896879_SNP [dm3] 3R_27071157_SNP [dm6]	T	C	2.090e^-4	0.647	INTERGENIC
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	2.092e^-4	0.647	INTERGENIC
2L	5314245	2L_5314245_SNP [dm3] 2L_5314245_SNP [dm6]	C	T	2.093e^-4	0.647	INTRON CG14024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5496355	3R_5496355_SNP [dm3] 3R_9670633_SNP [dm6]	G	A	2.098e^-4	0.647	INTRON CG9492
2L	9934225	2L_9934225_SNP [dm3] 2L_9934225_SNP [dm6]	A	T	2.103e^-4	0.647	DOWNSTREAM CG31712 INTERGENIC
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	2.109e^-4	0.647	INTERGENIC
2R	14662652	2R_14662652_DEL [dm3] 2R_18775147_DEL [dm6]	CGAATCCC	C	2.110e^-4	0.647	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662661	2R_14662661_SNP [dm3] 2R_18775156_SNP [dm6]	A	G	2.111e^-4	0.647	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13996704	2R_13996704_SNP [dm3] 2R_18109199_SNP [dm6]	A	T	2.113e^-4	0.647	UPSTREAM CG5756 & 1 other INTERGENIC
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	2.118e^-4	0.647	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8273268	X_8273268_DEL [dm3] X_8379235_DEL [dm6]	AA	G	2.123e^-4	0.647	INTERGENIC
2R	12530966	2R_12530966_SNP [dm3] 2R_16643461_SNP [dm6]	A	T	2.129e^-4	0.647	INTRON gprs	TF binding site BDTNP1_TFBS_da
2L	9942880	2L_9942880_SNP [dm3] 2L_9942880_SNP [dm6]	A	C	2.130e^-4	0.647	SPLICE_SITE_REGION CG5853 UTR_3_PRIME CG4619 INTRON CG5853
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	2.130e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5600693	2L_5600693_SNP [dm3] 2L_5600693_SNP [dm6]	G	C	2.134e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	8582612	2L_8582612_SNP [dm3] 2L_8582612_SNP [dm6]	A	G	2.140e^-4	0.647	INTRON Sema-1a
2R	14662527	2R_14662527_SNP [dm3] 2R_18775022_SNP [dm6]	G	T	2.146e^-4	0.647	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	17149609	3L_17149609_SNP [dm3] 3L_17156509_SNP [dm6]	T	A	2.148e^-4	0.647	INTRON Rbp6
2L	1975361	2L_1975361_SNP [dm3] 2L_1975361_SNP [dm6]	T	A	2.149e^-4	0.647	UTR_3_PRIME Der-1 DOWNSTREAM CG15356
3L	14294826	3L_14294826_SNP [dm3] 3L_14301726_SNP [dm6]	T	C	2.152e^-4	0.647	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16900878	3L_16900878_SNP [dm3] 3L_16907778_SNP [dm6]	C	G	2.158e^-4	0.647	DOWNSTREAM Lmpt INTRON Lmpt
3R	26099242	3R_26099242_SNP [dm3] 3R_30273520_SNP [dm6]	A	T	2.158e^-4	0.647	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18411596	3L_18411596_SNP [dm3] 3L_18418496_SNP [dm6]	A	T	2.160e^-4	0.647	INTERGENIC
3L	6099358	3L_6099358_SNP [dm3] 3L_6106258_SNP [dm6]	C	A	2.164e^-4	0.647	INTRON Ets65A
3R	13854148	3R_13854148_SNP [dm3] 3R_18028426_SNP [dm6]	A	G	2.165e^-4	0.647	INTERGENIC
2R	20019443	2R_20019443_SNP [dm3] 2R_24131920_SNP [dm6]	C	T	2.171e^-4	0.647	UPSTREAM tamo INTRON tamo
3L	4242638	3L_4242638_SNP [dm3] 3L_4242638_SNP [dm6]	A	G	2.174e^-4	0.647	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	20358977	2R_20358977_SNP [dm3] 2R_24471454_SNP [dm6]	T	C	2.174e^-4	0.647	INTRON CG13579
3L	18304745	3L_18304745_SNP [dm3] 3L_18311645_SNP [dm6]	T	A	2.176e^-4	0.647	INTERGENIC
3R	22050007	3R_22050007_INS [dm3] 3R_26224285_INS [dm6]	G	GTTTCTCGATTATTCAG...	2.177e^-4	0.647	INTERGENIC
2R	15475109	2R_15475109_SNP [dm3] 2R_19587604_SNP [dm6]	A	T	2.179e^-4	0.647	SYNONYMOUS_CODING CG42878 INTRON sm
2L	3861594	2L_3861594_SNP [dm3] 2L_3861594_SNP [dm6]	A	T	2.181e^-4	0.647	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	6486079	2R_6486079_SNP [dm3] 2R_10598574_SNP [dm6]	G	T	2.187e^-4	0.647	INTRON psq
3L	18381122	3L_18381122_SNP [dm3] 3L_18388022_SNP [dm6]	T	C	2.189e^-4	0.647	INTERGENIC
2R	7703857	2R_7703857_SNP [dm3] 2R_11816352_SNP [dm6]	A	T	2.191e^-4	0.647	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26471682	3R_26471682_SNP [dm3] 3R_30645960_SNP [dm6]	G	A	2.199e^-4	0.649	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
2L	17924654	2L_17924654_SNP [dm3] 2L_17924654_SNP [dm6]	G	C	2.209e^-4	0.65	INTERGENIC
3R	23061922	3R_23061922_SNP [dm3] 3R_27236200_SNP [dm6]	A	C	2.210e^-4	0.65	INTRON CG31064 & 1 other
2L	5070541	2L_5070541_SNP [dm3] 2L_5070541_SNP [dm6]	G	C	2.219e^-4	0.65	UTR_3_PRIME qtc UPSTREAM RpL37A DOWNSTREAM CR45305	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	383243	3L_383243_SNP [dm3] 3L_383243_SNP [dm6]	C	G	2.223e^-4	0.65	INTRON trh
2R	14662494	2R_14662494_SNP [dm3] 2R_18774989_SNP [dm6]	G	C	2.229e^-4	0.65	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9388987	3L_9388987_SNP [dm3] 3L_9395887_SNP [dm6]	G	T	2.229e^-4	0.65	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	321414	3L_321414_SNP [dm3] 3L_321414_SNP [dm6]	T	G	2.229e^-4	0.65	INTRON CG32344	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25909492	3R_25909492_SNP [dm3] 3R_30083770_SNP [dm6]	G	A	2.231e^-4	0.65	INTRON sima
3L	12017648	3L_12017648_SNP [dm3] 3L_12024548_SNP [dm6]	T	C	2.236e^-4	0.65	INTRON rols
2R	18367142	2R_18367142_SNP [dm3] 2R_22479637_SNP [dm6]	A	G	2.242e^-4	0.65	INTRON CG4752
3L	8956651	3L_8956651_SNP [dm3] 3L_8963551_SNP [dm6]	C	T	2.246e^-4	0.65	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10659992	2L_10659992_SNP [dm3] 2L_10659992_SNP [dm6]	A	C	2.248e^-4	0.65	INTERGENIC
3R	23266448	3R_23266448_SNP [dm3] 3R_27440726_SNP [dm6]	A	C	2.251e^-4	0.65	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14379552	2L_14379552_SNP [dm3] 2L_14379552_SNP [dm6]	T	C	2.252e^-4	0.65	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	2.256e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	2058149	2L_2058149_SNP [dm3] 2L_2058149_SNP [dm6]	G	A	2.263e^-4	0.651	DOWNSTREAM dpr3 & 1 other INTERGENIC
3L	7307474	3L_7307474_SNP [dm3] 3L_7314374_SNP [dm6]	T	A	2.269e^-4	0.652	INTERGENIC
2L	5631027	2L_5631027_SNP [dm3] 2L_5631027_SNP [dm6]	G	T	2.276e^-4	0.653	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	17164726	X_17164726_SNP [dm3] X_17270693_SNP [dm6]	G	A	2.284e^-4	0.653	INTRON f
3L	14140323	3L_14140323_SNP [dm3] 3L_14147223_SNP [dm6]	T	C	2.285e^-4	0.653	INTERGENIC	regulatory region REDfly_CRMs
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	2.286e^-4	0.653	UPSTREAM Dh31 INTERGENIC
2L	21179176	2L_21179176_SNP [dm3] 2L_21179176_SNP [dm6]	G	A	2.289e^-4	0.653	UPSTREAM Mcm10 INTRON bur EXON CR44911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	13467746	X_13467746_MNP [dm3] X_13573713_MNP [dm6]	GAAA	CTTG	2.305e^-4	0.654	INTRON Tango13
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	2.312e^-4	0.654	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1291748	2L_1291748_DEL [dm3] 2L_1291748_DEL [dm6]	TT	T	2.313e^-4	0.654	INTRON robo3
3L	7453626	3L_7453626_SNP [dm3] 3L_7460526_SNP [dm6]	T	C	2.314e^-4	0.654	INTERGENIC
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	2.315e^-4	0.654	INTRON Dh31
2L	5564033	2L_5564033_SNP [dm3] 2L_5564033_SNP [dm6]	A	G	2.318e^-4	0.654	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2L	12520832	2L_12520832_SNP [dm3] 2L_12520832_SNP [dm6]	G	T	2.322e^-4	0.654	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
3R	25909564	3R_25909564_SNP [dm3] 3R_30083842_SNP [dm6]	A	G	2.325e^-4	0.654	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25909567	3R_25909567_SNP [dm3] 3R_30083845_SNP [dm6]	A	C	2.326e^-4	0.654	INTRON sima	TF binding site mE1_TFBS_Trl
X	5467156	X_5467156_SNP [dm3] X_5573123_SNP [dm6]	T	C	2.334e^-4	0.654	INTERGENIC
2L	14021464	2L_14021464_SNP [dm3] 2L_14021464_SNP [dm6]	T	C	2.340e^-4	0.654	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16178013	2R_16178013_SNP [dm3] 2R_20290508_SNP [dm6]	G	T	2.341e^-4	0.654	UTR_3_PRIME CkIIbeta2 INTRON Cpr56F
2L	11667600	2L_11667600_SNP [dm3] 2L_11667600_SNP [dm6]	C	G	2.344e^-4	0.654	INTERGENIC
2L	8348201	2L_8348201_SNP [dm3] 2L_8348201_SNP [dm6]	A	G	2.345e^-4	0.654	INTRON CG7778
2L	1157382	2L_1157382_DEL [dm3] 2L_1157382_DEL [dm6]	GG	G	2.348e^-4	0.654	INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25865299	3R_25865299_SNP [dm3] 3R_30039577_SNP [dm6]	A	G	2.349e^-4	0.654	UPSTREAM Sry-beta & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	20022898	2R_20022898_SNP [dm3] 2R_24135375_SNP [dm6]	T	C	2.354e^-4	0.654	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3R	25565483	3R_25565483_SNP [dm3] 3R_29739761_SNP [dm6]	T	G	2.358e^-4	0.654	UTR_5_PRIME CG1969 UPSTREAM CG1969
3L	9389049	3L_9389049_SNP [dm3] 3L_9395949_SNP [dm6]	T	A	2.362e^-4	0.654	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6913131	3L_6913131_SNP [dm3] 3L_6920031_SNP [dm6]	T	C	2.362e^-4	0.654	INTERGENIC
2R	10866482	2R_10866482_SNP [dm3] 2R_14978977_SNP [dm6]	A	G	2.371e^-4	0.654	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	14662733	2R_14662733_SNP [dm3] 2R_18775228_SNP [dm6]	T	A	2.372e^-4	0.654	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12413635	2R_12413635_SNP [dm3] 2R_16526130_SNP [dm6]	A	C	2.384e^-4	0.655	INTRON Sema-2a
2L	12721530	2L_12721530_SNP [dm3] 2L_12721530_SNP [dm6]	A	G	2.392e^-4	0.655	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	5648561	3R_5648561_SNP [dm3] 3R_9822839_SNP [dm6]	T	C	2.397e^-4	0.655	DOWNSTREAM CG34302 INTERGENIC
X	20549628	X_20549628_SNP [dm3] X_20678601_SNP [dm6]	G	T	2.399e^-4	0.655	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	22142836	3R_22142836_DEL [dm3] 3R_26317114_DEL [dm6]	CCTTTCTCGCTC...	C	2.402e^-4	0.655	INTERGENIC
3R	7728045	3R_7728045_SNP [dm3] 3R_11902323_SNP [dm6]	C	A	2.408e^-4	0.655	INTRON Cad87A
X	20390345	X_20390345_SNP [dm3] X_20519318_SNP [dm6]	C	T	2.408e^-4	0.655	INTRON Tak1
2L	6976575	2L_6976575_SNP [dm3] 2L_6976575_SNP [dm6]	C	T	2.409e^-4	0.655	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20019751	2R_20019751_SNP [dm3] 2R_24132228_SNP [dm6]	G	C	2.411e^-4	0.655	UPSTREAM tamo INTRON tamo
2L	2962941	2L_2962941_SNP [dm3] 2L_2962941_SNP [dm6]	A	T	2.415e^-4	0.655	INTRON Rbp9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5204195	2L_5204195_SNP [dm3] 2L_5204195_SNP [dm6]	G	A	2.426e^-4	0.655	INTRON Msp300
2L	8582613	2L_8582613_INS [dm3] 2L_8582613_INS [dm6]	A	AAAT	2.427e^-4	0.655	INTRON Sema-1a
3L	8161891	3L_8161891_SNP [dm3] 3L_8168791_SNP [dm6]	A	T	2.429e^-4	0.655	INTERGENIC
3R	25876114	3R_25876114_SNP [dm3] 3R_30050392_SNP [dm6]	C	G	2.433e^-4	0.655	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7704005	2R_7704005_SNP [dm3] 2R_11816500_SNP [dm6]	A	G	2.440e^-4	0.655	INTERGENIC
2R	14662928	2R_14662928_SNP [dm3] 2R_18775423_SNP [dm6]	G	C	2.442e^-4	0.655	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2184885	2L_2184885_SNP [dm3] 2L_2184885_SNP [dm6]	A	T	2.443e^-4	0.655	EXON CR43751	regulatory region REDfly_CRMs
3R	1697728	3R_1697728_DEL [dm3] 3R_5872006_DEL [dm6]	CGCCCACAC	C	2.446e^-4	0.655	INTRON CG34113
3L	5266323	3L_5266323_SNP [dm3] 3L_5273223_SNP [dm6]	T	A	2.449e^-4	0.655	UTR_5_PRIME shep INTRON shep
3R	18421658	3R_18421658_SNP [dm3] 3R_22595936_SNP [dm6]	T	G	2.453e^-4	0.655	INTRON Efa6
2L	8526617	2L_8526617_DEL [dm3] 2L_8526617_DEL [dm6]	AA	A	2.457e^-4	0.655	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer	TF binding site mE1_TFBS_cad
2L	16714969	2L_16714969_SNP [dm3] 2L_16714969_SNP [dm6]	C	A	2.460e^-4	0.655	UPSTREAM Cyt-c-d INTRON CG31808
2L	3304395	2L_3304395_SNP [dm3] 2L_3304395_SNP [dm6]	A	C	2.462e^-4	0.655	UTR_5_PRIME CG3277
3L	7533363	3L_7533363_SNP [dm3] 3L_7540263_SNP [dm6]	C	T	2.463e^-4	0.655	UPSTREAM CG16998 DOWNSTREAM CG32374 & 1 other INTERGENIC
3R	9298438	3R_9298438_SNP [dm3] 3R_13472716_SNP [dm6]	T	C	2.468e^-4	0.655	INTERGENIC
2L	8510361	2L_8510361_SNP [dm3] 2L_8510361_SNP [dm6]	C	A	2.470e^-4	0.655	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5423707	3L_5423707_SNP [dm3] 3L_5430607_SNP [dm6]	C	T	2.470e^-4	0.655	INTRON CG34391
3L	13383015	3L_13383015_SNP [dm3] 3L_13389915_SNP [dm6]	C	T	2.474e^-4	0.655	UTR_5_PRIME Poc1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14662666	2R_14662666_DEL [dm3] 2R_18775161_DEL [dm6]	TT	T	2.479e^-4	0.656	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10619849	2R_10619849_SNP [dm3] 2R_14732344_SNP [dm6]	A	G	2.493e^-4	0.658	INTERGENIC
3L	6503263	3L_6503263_INS [dm3] 3L_6510163_INS [dm6]	A	AA	2.495e^-4	0.658	INTRON sfl
2L	9429043	2L_9429043_SNP [dm3] 2L_9429043_SNP [dm6]	A	G	2.505e^-4	0.658	SYNONYMOUS_CODING FucTB DOWNSTREAM CG42847
2R	12559463	2R_12559463_SNP [dm3] 2R_16671958_SNP [dm6]	C	T	2.505e^-4	0.658	UPSTREAM CG34458 DOWNSTREAM CG34457 INTERGENIC
2L	18388346	2L_18388346_DEL [dm3] 2L_18388346_DEL [dm6]	TT	T	2.510e^-4	0.658	INTRON Fas3
2L	5063220	2L_5063220_SNP [dm3] 2L_5063220_SNP [dm6]	T	C	2.511e^-4	0.658	INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14677148	2L_14677148_SNP [dm3] 2L_14677148_SNP [dm6]	A	G	2.516e^-4	0.658	INTRON osp
2R	3521030	2R_3521030_SNP [dm3] 2R_7633525_SNP [dm6]	T	G	2.517e^-4	0.658	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
3R	16603569	3R_16603569_SNP [dm3] 3R_20777847_SNP [dm6]	C	T	2.518e^-4	0.658	INTRON Syp	TF binding site mE1_TFBS_Trl
2L	8138269	2L_8138269_SNP [dm3] 2L_8138269_SNP [dm6]	C	T	2.522e^-4	0.658	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5674184	2L_5674184_SNP [dm3] 2L_5674184_SNP [dm6]	T	A	2.537e^-4	0.661	INTERGENIC
3R	25319672	3R_25319672_SNP [dm3] 3R_29493950_SNP [dm6]	G	T	2.545e^-4	0.662	SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7011002	2L_7011002_SNP [dm3] 2L_7011002_SNP [dm6]	C	T	2.548e^-4	0.662	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2278251	2L_2278251_SNP [dm3] 2L_2278251_SNP [dm6]	G	T	2.553e^-4	0.662	INTRON CR43753 EXON CR43753
X	12837940	X_12837940_SNP [dm3] X_12943907_SNP [dm6]	A	G	2.555e^-4	0.662	INTRON fne
2L	15763219	2L_15763219_SNP [dm3] 2L_15763219_SNP [dm6]	A	T	2.578e^-4	0.666	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	7728163	3R_7728163_SNP [dm3] 3R_11902441_SNP [dm6]	A	T	2.579e^-4	0.666	INTRON Cad87A
X	20383884	X_20383884_SNP [dm3] X_20512857_SNP [dm6]	T	G	2.580e^-4	0.666	INTRON CG1812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10377550	3L_10377550_SNP [dm3] 3L_10384450_SNP [dm6]	A	C	2.588e^-4	0.666	INTERGENIC
2R	20019791	2R_20019791_SNP [dm3] 2R_24132268_SNP [dm6]	G	A	2.595e^-4	0.666	UPSTREAM tamo INTRON tamo
3L	10377541	3L_10377541_SNP [dm3] 3L_10384441_SNP [dm6]	G	T	2.599e^-4	0.666	INTERGENIC
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	2.607e^-4	0.666	INTRON Octbeta1R
3R	17690623	3R_17690623_SNP [dm3] 3R_21864901_SNP [dm6]	G	T	2.608e^-4	0.666	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8541300	2L_8541300_SNP [dm3] 2L_8541300_SNP [dm6]	T	G	2.619e^-4	0.666	UTR_3_PRIME CG17834 UPSTREAM tRNA:CR31603 & 1 other DOWNSTREAM tRNA:CR31604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12691348	2R_12691348_SNP [dm3] 2R_16803843_SNP [dm6]	G	C	2.630e^-4	0.666	INTERGENIC
2R	12691373	2R_12691373_SNP [dm3] 2R_16803868_SNP [dm6]	A	T	2.630e^-4	0.666	INTERGENIC
2L	17330541	2L_17330541_SNP [dm3] 2L_17330541_SNP [dm6]	A	T	2.630e^-4	0.666	INTERGENIC
3R	19038101	3R_19038101_SNP [dm3] 3R_23212379_SNP [dm6]	A	T	2.642e^-4	0.666	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10524909	2L_10524909_SNP [dm3] 2L_10524909_SNP [dm6]	T	G	2.645e^-4	0.666	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2541232	2L_2541232_SNP [dm3] 2L_2541232_SNP [dm6]	C	T	2.646e^-4	0.666	INTERGENIC
3R	14119845	3R_14119845_SNP [dm3] 3R_18294123_SNP [dm6]	A	G	2.648e^-4	0.666	INTRON l_3_05822
2L	2420478	2L_2420478_SNP [dm3] 2L_2420478_SNP [dm6]	A	T	2.653e^-4	0.666	UPSTREAM CG34447 & 1 other INTERGENIC
3L	10376274	3L_10376274_SNP [dm3] 3L_10383174_SNP [dm6]	G	A	2.654e^-4	0.666	INTERGENIC
2L	11591540	2L_11591540_SNP [dm3] 2L_11591540_SNP [dm6]	A	G	2.658e^-4	0.666	SYNONYMOUS_CODING Acp33A INTRON kek2
2L	2917678	2L_2917678_SNP [dm3] 2L_2917678_SNP [dm6]	G	A	2.660e^-4	0.666	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	3123440	2L_3123440_SNP [dm3] 2L_3123440_SNP [dm6]	A	G	2.662e^-4	0.666	INTRON toc
2L	2208975	2L_2208975_SNP [dm3] 2L_2208975_SNP [dm6]	G	A	2.662e^-4	0.666	START_GAINED CG33124 UTR_5_PRIME CG33124 DOWNSTREAM CG15385
2R	10656691	2R_10656691_INS [dm3] 2R_14769186_INS [dm6]	A	ACA	2.662e^-4	0.666	DOWNSTREAM CG42254 INTRON Spred	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8539867	2L_8539867_SNP [dm3] 2L_8539867_SNP [dm6]	G	A	2.670e^-4	0.666	INTRON CG17834
X	11071856	X_11071856_SNP [dm3] X_11177823_SNP [dm6]	C	T	2.675e^-4	0.666	INTERGENIC
3L	10446405	3L_10446405_SNP [dm3] 3L_10453305_SNP [dm6]	G	A	2.676e^-4	0.666	INTERGENIC
2L	5560553	2L_5560553_SNP [dm3] 2L_5560553_SNP [dm6]	A	G	2.685e^-4	0.666	INTRON GluRIIB
X	14434947	X_14434947_SNP [dm3] X_14540914_SNP [dm6]	T	C	2.691e^-4	0.666	EXON CR45521
X	5262801	X_5262801_SNP [dm3] X_5368768_SNP [dm6]	A	T	2.693e^-4	0.666	INTRON SK
2L	13901230	2L_13901230_SNP [dm3] 2L_13901230_SNP [dm6]	G	A	2.695e^-4	0.666	SYNONYMOUS_CODING Smg5
2R	8983460	2R_8983460_SNP [dm3] 2R_13095955_SNP [dm6]	T	A	2.696e^-4	0.666	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5590415	2L_5590415_SNP [dm3] 2L_5590415_SNP [dm6]	A	G	2.697e^-4	0.666	INTERGENIC
2L	1553386	2L_1553386_SNP [dm3] 2L_1553386_SNP [dm6]	A	T	2.698e^-4	0.666	INTERGENIC
3L	4768732	3L_4768732_SNP [dm3] 3L_4768732_SNP [dm6]	G	A	2.699e^-4	0.666	INTRON RhoGEF64C
2L	5600765	2L_5600765_SNP [dm3] 2L_5600765_SNP [dm6]	T	G	2.700e^-4	0.666	DOWNSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	10446892	3L_10446892_SNP [dm3] 3L_10453792_SNP [dm6]	A	T	2.700e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10378489	3L_10378489_SNP [dm3] 3L_10385389_SNP [dm6]	C	A	2.703e^-4	0.666	INTERGENIC
X	9494043	X_9494043_SNP [dm3] X_9600010_SNP [dm6]	A	G	2.711e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
2L	12694795	2L_12694795_SNP [dm3] 2L_12694795_SNP [dm6]	C	T	2.714e^-4	0.667	SYNONYMOUS_CODING CG5780 UPSTREAM PICK1 DOWNSTREAM CG6153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8099276	2L_8099276_SNP [dm3] 2L_8099276_SNP [dm6]	G	A	2.722e^-4	0.668	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	2143647	3R_2143647_SNP [dm3] 3R_6317925_SNP [dm6]	T	C	2.733e^-4	0.669	SYNONYMOUS_CODING Osi17
2R	18522083	2R_18522083_SNP [dm3] 2R_22634578_SNP [dm6]	G	T	2.734e^-4	0.669	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7582580	X_7582580_SNP [dm3] X_7688547_SNP [dm6]	A	G	2.735e^-4	0.669	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	5961708	3L_5961708_SNP [dm3] 3L_5968608_SNP [dm6]	G	T	2.740e^-4	0.669	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10445914	3L_10445914_SNP [dm3] 3L_10452814_SNP [dm6]	C	A	2.751e^-4	0.671	INTERGENIC
3L	4242628	3L_4242628_SNP [dm3] 3L_4242628_SNP [dm6]	T	G	2.756e^-4	0.671	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8494467	2L_8494467_SNP [dm3] 2L_8494467_SNP [dm6]	C	T	2.757e^-4	0.671	DOWNSTREAM Bace INTRON Dh31
2L	14438211	2L_14438211_SNP [dm3] 2L_14438211_SNP [dm6]	T	C	2.770e^-4	0.673	INTERGENIC
3R	20249905	3R_20249905_SNP [dm3] 3R_24424183_SNP [dm6]	G	A	2.779e^-4	0.674	INTRON nAChRalpha1
2R	8455691	2R_8455691_SNP [dm3] 2R_12568186_SNP [dm6]	A	G	2.785e^-4	0.674	NON_SYNONYMOUS_CODING Cyp301a1 DOWNSTREAM Ak6
2R	4913289	2R_4913289_SNP [dm3] 2R_9025784_SNP [dm6]	A	T	2.788e^-4	0.674	INTRON CG8170	TF binding site mE1_TFBS_chinmo
2R	14662742	2R_14662742_SNP [dm3] 2R_18775237_SNP [dm6]	A	C	2.788e^-4	0.674	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18304828	3L_18304828_SNP [dm3] 3L_18311728_SNP [dm6]	A	G	2.794e^-4	0.675	INTERGENIC
2R	12264817	2R_12264817_SNP [dm3] 2R_16377312_SNP [dm6]	T	G	2.808e^-4	0.677	INTERGENIC
2L	16543982	2L_16543982_SNP [dm3] 2L_16543982_SNP [dm6]	C	G	2.818e^-4	0.679	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8710183	3R_8710183_SNP [dm3] 3R_12884461_SNP [dm6]	A	C	2.826e^-4	0.679	INTERGENIC
2L	4863495	2L_4863495_SNP [dm3] 2L_4863495_SNP [dm6]	C	T	2.832e^-4	0.68	INTRON pog
2R	16363130	2R_16363130_SNP [dm3] 2R_20475625_SNP [dm6]	G	T	2.834e^-4	0.68	INTRON CG12484
2R	7704060	2R_7704060_SNP [dm3] 2R_11816555_SNP [dm6]	A	T	2.842e^-4	0.68	INTERGENIC
3L	5961007	3L_5961007_SNP [dm3] 3L_5967907_SNP [dm6]	G	A	2.843e^-4	0.68	SYNONYMOUS_CODING CG10479	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	7090798	3R_7090798_SNP [dm3] 3R_11265076_SNP [dm6]	C	A	2.849e^-4	0.681	INTERGENIC
2L	5329376	2L_5329376_SNP [dm3] 2L_5329376_SNP [dm6]	G	T	2.853e^-4	0.681	UPSTREAM CG14022 & 1 other INTERGENIC
3L	3098283	3L_3098283_SNP [dm3] 3L_3098283_SNP [dm6]	A	G	2.856e^-4	0.681	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3R	23556994	3R_23556994_SNP [dm3] 3R_27731272_SNP [dm6]	G	A	2.882e^-4	0.685	INTERGENIC
2R	14662721	2R_14662721_SNP [dm3] 2R_18775216_SNP [dm6]	T	A	2.883e^-4	0.685	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26471862	3R_26471862_SNP [dm3] 3R_30646140_SNP [dm6]	A	T	2.895e^-4	0.685	UTR_3_PRIME PH4alphaPV UPSTREAM CG31013
2R	9124084	2R_9124084_SNP [dm3] 2R_13236579_SNP [dm6]	C	T	2.897e^-4	0.685	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_sens
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	2.914e^-4	0.685	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8365441	3L_8365441_SNP [dm3] 3L_8372341_SNP [dm6]	C	T	2.915e^-4	0.685	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7453468	3L_7453468_SNP [dm3] 3L_7460368_SNP [dm6]	A	C	2.916e^-4	0.685	INTERGENIC
2L	2517373	2L_2517373_SNP [dm3] 2L_2517373_SNP [dm6]	C	A	2.916e^-4	0.685	SYNONYMOUS_CODING CG3528
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	2.919e^-4	0.685	INTRON CG17834
2L	3627912	2L_3627912_SNP [dm3] 2L_3627912_SNP [dm6]	G	C	2.922e^-4	0.685	INTRON for
2L	8508431	2L_8508431_SNP [dm3] 2L_8508431_SNP [dm6]	A	T	2.926e^-4	0.685	DOWNSTREAM CG13096 INTERGENIC
3R	24277194	3R_24277194_DEL [dm3] 3R_28451472_DEL [dm6]	AA	A	2.927e^-4	0.685	INTRON beat-VI
2L	12892474	2L_12892474_SNP [dm3] 2L_12892474_SNP [dm6]	G	C	2.927e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8105546	X_8105546_SNP [dm3] X_8211513_SNP [dm6]	G	T	2.927e^-4	0.685	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	5004720	X_5004720_SNP [dm3] X_5110687_SNP [dm6]	G	A	2.929e^-4	0.685	INTRON rg & 1 other
X	1036275	X_1036275_SNP [dm3] X_1142242_SNP [dm6]	A	T	2.942e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	2.944e^-4	0.685	INTRON Adk1
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	2.948e^-4	0.685	INTRON Edem2	TF binding site mE1_TFBS_cad
2R	17397317	2R_17397317_DEL [dm3] 2R_21509812_DEL [dm6]	TTTTACGT	T	2.964e^-4	0.685	INTRON MESK2
2R	14216641	2R_14216641_SNP [dm3] 2R_18329136_SNP [dm6]	C	T	2.966e^-4	0.685	INTRON sbb
3R	6265512	3R_6265512_SNP [dm3] 3R_10439790_SNP [dm6]	G	A	2.970e^-4	0.685	INTERGENIC
2L	15774885	2L_15774885_SNP [dm3] 2L_15774885_SNP [dm6]	G	C	2.977e^-4	0.685	INTERGENIC
2L	15131608	2L_15131608_INS [dm3] 2L_15131608_INS [dm6]	A	AG	2.986e^-4	0.685	DOWNSTREAM tRNA:L:35C INTERGENIC
2R	11641997	2R_11641997_SNP [dm3] 2R_15754492_SNP [dm6]	G	A	2.986e^-4	0.685	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4652662	2L_4652662_SNP [dm3] 2L_4652662_SNP [dm6]	G	A	2.987e^-4	0.685	SYNONYMOUS_CODING CG3355 UTR_3_PRIME CG3355	TF binding site mE1_TFBS_chinmo
X	3226219	X_3226219_SNP [dm3] X_3332186_SNP [dm6]	C	T	2.991e^-4	0.685	INTRON CR44886 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	14677155	2L_14677155_SNP [dm3] 2L_14677155_SNP [dm6]	A	T	2.992e^-4	0.685	INTRON osp
2R	7703856	2R_7703856_SNP [dm3] 2R_11816351_SNP [dm6]	A	C	2.994e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2684324	3L_2684324_SNP [dm3] 3L_2684324_SNP [dm6]	A	C	3.003e^-4	0.685	INTRON Fife
2L	4863489	2L_4863489_SNP [dm3] 2L_4863489_SNP [dm6]	G	T	3.003e^-4	0.685	INTRON pog
3L	2316239	3L_2316239_SNP [dm3] 3L_2316239_SNP [dm6]	C	T	3.006e^-4	0.685	DOWNSTREAM CR45427 INTERGENIC
2L	14438216	2L_14438216_SNP [dm3] 2L_14438216_SNP [dm6]	C	T	3.006e^-4	0.685	INTERGENIC
3L	14283985	3L_14283985_SNP [dm3] 3L_14290885_SNP [dm6]	T	C	3.007e^-4	0.685	INTRON fz
3R	22912460	3R_22912460_SNP [dm3] 3R_27086738_SNP [dm6]	G	A	3.008e^-4	0.685	UPSTREAM Cpr97Ea INTRON Cpr97Ea
2R	7121816	2R_7121816_SNP [dm3] 2R_11234311_SNP [dm6]	C	T	3.009e^-4	0.685	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218 & 1 other
2L	3351289	2L_3351289_SNP [dm3] 2L_3351289_SNP [dm6]	G	A	3.019e^-4	0.685	INTRON E23
2L	8490794	2L_8490794_SNP [dm3] 2L_8490794_SNP [dm6]	A	G	3.021e^-4	0.685	UTR_5_PRIME CG43400 DOWNSTREAM CG13088
2L	12727225	2L_12727225_SNP [dm3] 2L_12727225_SNP [dm6]	T	G	3.024e^-4	0.685	INTRON MRP
2R	15039832	2R_15039832_SNP [dm3] 2R_19152327_SNP [dm6]	G	A	3.030e^-4	0.685	INTRON ena
2R	14663073	2R_14663073_SNP [dm3] 2R_18775568_SNP [dm6]	A	G	3.033e^-4	0.685	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1594950	2L_1594950_SNP [dm3] 2L_1594950_SNP [dm6]	C	A	3.033e^-4	0.685	UTR_3_PRIME CG31935 INTRON haf
2L	3355028	2L_3355028_SNP [dm3] 2L_3355028_SNP [dm6]	A	G	3.034e^-4	0.685	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355037	2L_3355037_SNP [dm3] 2L_3355037_SNP [dm6]	C	T	3.034e^-4	0.685	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6020447	2L_6020447_SNP [dm3] 2L_6020447_SNP [dm6]	A	G	3.035e^-4	0.685	UPSTREAM CG13996 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11627476	X_11627476_SNP [dm3] X_11733443_SNP [dm6]	A	T	3.039e^-4	0.685	UPSTREAM inaF-B INTRON CG15221 & 1 other
3L	7453587	3L_7453587_SNP [dm3] 3L_7460487_SNP [dm6]	G	C	3.044e^-4	0.685	INTERGENIC
3L	9388996	3L_9388996_SNP [dm3] 3L_9395896_SNP [dm6]	T	A	3.050e^-4	0.685	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	15511266	3L_15511266_SNP [dm3] 3L_15518166_SNP [dm6]	C	G	3.055e^-4	0.685	INTRON mex1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14425723	2R_14425723_SNP [dm3] 2R_18538218_SNP [dm6]	G	T	3.058e^-4	0.685	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	18846292	2R_18846292_SNP [dm3] 2R_22958769_SNP [dm6]	C	T	3.059e^-4	0.685	INTERGENIC
2R	11461847	2R_11461847_SNP [dm3] 2R_15574342_SNP [dm6]	A	T	3.075e^-4	0.687	UPSTREAM CG8204 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15763259	2L_15763259_DEL [dm3] 2L_15763259_DEL [dm6]	AAGTCTGAATTAATGCCAAC...	A	3.075e^-4	0.687	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18276690	2R_18276690_SNP [dm3] 2R_22389185_SNP [dm6]	C	A	3.081e^-4	0.688	INTRON CG13506	TF binding site mE1_TFBS_cad
2R	8928584	2R_8928584_SNP [dm3] 2R_13041079_SNP [dm6]	T	A	3.084e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12566501	2R_12566501_SNP [dm3] 2R_16678996_SNP [dm6]	A	C	3.095e^-4	0.689	SYNONYMOUS_CODING CG30463
3R	1596049	3R_1596049_SNP [dm3] 3R_5770327_SNP [dm6]	T	C	3.105e^-4	0.689	INTRON CG2082
2L	15131604	2L_15131604_SNP [dm3] 2L_15131604_SNP [dm6]	A	C	3.110e^-4	0.689	DOWNSTREAM tRNA:L:35C INTERGENIC
2L	15131606	2L_15131606_INS [dm3] 2L_15131606_INS [dm6]	T	TATATATATC	3.110e^-4	0.689	DOWNSTREAM tRNA:L:35C INTERGENIC
2L	15131617	2L_15131617_INS [dm3] 2L_15131617_INS [dm6]	A	AGAAACATA	3.116e^-4	0.689	DOWNSTREAM tRNA:L:35C INTERGENIC
2L	1540774	2L_1540774_SNP [dm3] 2L_1540774_SNP [dm6]	C	T	3.121e^-4	0.689	INTERGENIC
X	20378466	X_20378466_SNP [dm3] X_20507439_SNP [dm6]	G	T	3.124e^-4	0.689	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
2R	9813567	2R_9813567_SNP [dm3] 2R_13926062_SNP [dm6]	G	C	3.136e^-4	0.689	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
2R	12962789	2R_12962789_SNP [dm3] 2R_17075284_SNP [dm6]	G	C	3.144e^-4	0.689	INTRON CG30460	TF binding site mE1_TFBS_cad
2L	7384405	2L_7384405_SNP [dm3] 2L_7384405_SNP [dm6]	A	T	3.145e^-4	0.689	DOWNSTREAM CG5149 & 1 other INTERGENIC
2L	18597846	2L_18597846_INS [dm3] 2L_18597846_INS [dm6]	C	CGTCAC	3.149e^-4	0.689	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10364952	2L_10364952_SNP [dm3] 2L_10364952_SNP [dm6]	T	A	3.152e^-4	0.689	DOWNSTREAM pim INTRON lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	20193571	2R_20193571_SNP [dm3] 2R_24306048_SNP [dm6]	T	G	3.152e^-4	0.689	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3779067	2L_3779067_SNP [dm3] 2L_3779067_SNP [dm6]	T	A	3.152e^-4	0.689	UTR_5_PRIME bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12694747	2L_12694747_SNP [dm3] 2L_12694747_SNP [dm6]	A	C	3.158e^-4	0.689	SYNONYMOUS_CODING CG5780 UPSTREAM PICK1 DOWNSTREAM CG6153	TF binding site BDTNP1_TFBS_dl
X	7743893	X_7743893_SNP [dm3] X_7849860_SNP [dm6]	C	A	3.158e^-4	0.689	INTERGENIC
3L	14334466	3L_14334466_SNP [dm3] 3L_14341366_SNP [dm6]	T	C	3.169e^-4	0.689	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	1540745	2L_1540745_SNP [dm3] 2L_1540745_SNP [dm6]	T	A	3.176e^-4	0.689	INTERGENIC
2L	2057162	2L_2057162_SNP [dm3] 2L_2057162_SNP [dm6]	G	A	3.181e^-4	0.689	INTRON Or22c
3L	13058142	3L_13058142_SNP [dm3] 3L_13065042_SNP [dm6]	C	A	3.182e^-4	0.689	INTERGENIC
2R	20127323	2R_20127323_SNP [dm3] 2R_24239800_SNP [dm6]	G	A	3.182e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	14430169	3L_14430169_DEL [dm3] 3L_14437069_DEL [dm6]	CAGCCC	C	3.186e^-4	0.689	INTRON bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9126709	2L_9126709_SNP [dm3] 2L_9126709_SNP [dm6]	T	C	3.188e^-4	0.689	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	9253263	3L_9253263_SNP [dm3] 3L_9260163_SNP [dm6]	G	T	3.191e^-4	0.689	INTRON GluRIB
2L	3419055	2L_3419055_SNP [dm3] 2L_3419055_SNP [dm6]	G	T	3.199e^-4	0.689	DOWNSTREAM CG31952 INTRON pgant2
3R	19038088	3R_19038088_SNP [dm3] 3R_23212366_SNP [dm6]	T	C	3.201e^-4	0.689	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12728637	2L_12728637_SNP [dm3] 2L_12728637_SNP [dm6]	T	A	3.204e^-4	0.689	NON_SYNONYMOUS_CODING MRP INTRON MRP
2L	13911349	2L_13911349_SNP [dm3] 2L_13911349_SNP [dm6]	T	A	3.206e^-4	0.689	SYNONYMOUS_CODING Ance-2 UPSTREAM Acyp	TF binding site mE1_TFBS_HSA
2L	1506626	2L_1506626_SNP [dm3] 2L_1506626_SNP [dm6]	C	G	3.220e^-4	0.689	INTERGENIC
3R	18337023	3R_18337023_DEL [dm3] 3R_22511301_DEL [dm6]	TACT	T	3.229e^-4	0.689	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	7960671	3R_7960671_SNP [dm3] 3R_12134949_SNP [dm6]	A	G	3.236e^-4	0.689	INTERGENIC
2L	1291690	2L_1291690_SNP [dm3] 2L_1291690_SNP [dm6]	G	A	3.237e^-4	0.689	INTRON robo3
X	16413427	X_16413427_SNP [dm3] X_16519394_SNP [dm6]	G	A	3.241e^-4	0.689	INTRON para
3R	23210314	3R_23210314_SNP [dm3] 3R_27384592_SNP [dm6]	A	G	3.246e^-4	0.689	INTRON side
3R	18288875	3R_18288875_SNP [dm3] 3R_22463153_SNP [dm6]	C	T	3.246e^-4	0.689	SYNONYMOUS_CODING AP-2mu	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7722014	2R_7722014_SNP [dm3] 2R_11834509_SNP [dm6]	A	T	3.248e^-4	0.689	INTRON Sobp
2L	1514228	2L_1514228_SNP [dm3] 2L_1514228_SNP [dm6]	C	T	3.250e^-4	0.689	INTERGENIC
2L	10637970	2L_10637970_SNP [dm3] 2L_10637970_SNP [dm6]	C	A	3.253e^-4	0.689	UPSTREAM CR45351 INTRON CG7329
2L	3598640	2L_3598640_SNP [dm3] 2L_3598640_SNP [dm6]	T	A	3.255e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11957818	2R_11957818_SNP [dm3] 2R_16070313_SNP [dm6]	G	A	3.256e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5672387	2L_5672387_SNP [dm3] 2L_5672387_SNP [dm6]	T	C	3.258e^-4	0.689	INTERGENIC
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	3.271e^-4	0.689	INTRON CG10384
3L	2217394	3L_2217394_SNP [dm3] 3L_2217394_SNP [dm6]	G	A	3.273e^-4	0.689	INTERGENIC
X	9667042	X_9667042_SNP [dm3] X_9773009_SNP [dm6]	G	A	3.274e^-4	0.689	INTERGENIC
2R	14662738	2R_14662738_SNP [dm3] 2R_18775233_SNP [dm6]	C	T	3.283e^-4	0.689	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5553346	2L_5553346_SNP [dm3] 2L_5553346_SNP [dm6]	A	C	3.284e^-4	0.689	UPSTREAM CG14017 DOWNSTREAM CG18269 INTRON CG14013
2L	5553349	2L_5553349_SNP [dm3] 2L_5553349_SNP [dm6]	A	T	3.284e^-4	0.689	UPSTREAM CG14017 DOWNSTREAM CG18269 INTRON CG14013
2L	9939556	2L_9939556_SNP [dm3] 2L_9939556_SNP [dm6]	A	G	3.289e^-4	0.689	NON_SYNONYMOUS_CODING CG4619 UPSTREAM Apf DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	2270396	X_2270396_SNP [dm3] X_2376363_SNP [dm6]	A	T	3.293e^-4	0.689	UTR_3_PRIME PsGEF INTRON PsGEF
2L	4694446	2L_4694446_SNP [dm3] 2L_4694446_SNP [dm6]	C	A	3.295e^-4	0.689	UPSTREAM CG34351 INTERGENIC
3L	7034596	3L_7034596_SNP [dm3] 3L_7041496_SNP [dm6]	C	T	3.300e^-4	0.689	INTRON Mp	TF binding site mE1_TFBS_inv
2L	8341464	2L_8341464_SNP [dm3] 2L_8341464_SNP [dm6]	T	C	3.300e^-4	0.689	UTR_3_PRIME CG14274
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	3.302e^-4	0.689	INTRON Rgk2
3L	17112975	3L_17112975_SNP [dm3] 3L_17119875_SNP [dm6]	G	T	3.304e^-4	0.689	INTRON Rbp6
3L	4242725	3L_4242725_SNP [dm3] 3L_4242725_SNP [dm6]	T	A	3.304e^-4	0.689	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14662731	2R_14662731_SNP [dm3] 2R_18775226_SNP [dm6]	C	A	3.306e^-4	0.689	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18075337	3R_18075337_SNP [dm3] 3R_22249615_SNP [dm6]	T	C	3.307e^-4	0.689	INTRON SKIP
2R	18361075	2R_18361075_SNP [dm3] 2R_22473570_SNP [dm6]	C	T	3.308e^-4	0.689	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3779034	2L_3779034_SNP [dm3] 2L_3779034_SNP [dm6]	C	A	3.308e^-4	0.689	UTR_5_PRIME bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10377763	3L_10377763_SNP [dm3] 3L_10384663_SNP [dm6]	C	T	3.313e^-4	0.689	INTERGENIC
3R	20331319	3R_20331319_SNP [dm3] 3R_24505597_SNP [dm6]	G	A	3.317e^-4	0.689	INTERGENIC
X	5210497	X_5210497_SNP [dm3] X_5316464_SNP [dm6]	T	C	3.318e^-4	0.689	NON_SYNONYMOUS_CODING CG15930 UPSTREAM Sas10	TF binding site mE1_TFBS_chinmo
2L	3505819	2L_3505819_SNP [dm3] 2L_3505819_SNP [dm6]	A	C	3.320e^-4	0.689	INTRON tim
2L	7003069	2L_7003069_SNP [dm3] 2L_7003069_SNP [dm6]	C	A	3.322e^-4	0.689	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	8688750	2R_8688750_SNP [dm3] 2R_12801245_SNP [dm6]	A	T	3.330e^-4	0.689	UTR_3_PRIME sca DOWNSTREAM sca
X	22040675	X_22040675_SNP [dm3] X_22638839_SNP [dm6]	T	A	3.330e^-4	0.689	INTERGENIC
X	14434902	X_14434902_SNP [dm3] X_14540869_SNP [dm6]	T	C	3.349e^-4	0.691	EXON CR45521
2L	608982	2L_608982_SNP [dm3] 2L_608982_SNP [dm6]	T	G	3.350e^-4	0.691	EXON CR43649
2L	5336484	2L_5336484_SNP [dm3] 2L_5336484_SNP [dm6]	G	A	3.352e^-4	0.691	UPSTREAM fusl INTRON fusl
2L	5206213	2L_5206213_SNP [dm3] 2L_5206213_SNP [dm6]	T	A	3.359e^-4	0.691	UTR_3_PRIME Msp300 DOWNSTREAM Msp300 EXON snmRNA:158
2R	15783856	2R_15783856_SNP [dm3] 2R_19896351_SNP [dm6]	T	C	3.363e^-4	0.692	INTERGENIC
3R	14596752	3R_14596752_SNP [dm3] 3R_18771030_SNP [dm6]	G	A	3.367e^-4	0.692	INTRON CG7720
3R	7960688	3R_7960688_SNP [dm3] 3R_12134966_SNP [dm6]	A	G	3.373e^-4	0.692	INTERGENIC
3L	16665093	3L_16665093_SNP [dm3] 3L_16671993_SNP [dm6]	G	A	3.374e^-4	0.692	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	17112967	3L_17112967_INS [dm3] 3L_17119867_INS [dm6]	A	AGAGCTTTTATTTTAAATAA...	3.391e^-4	0.693	INTRON Rbp6
3L	6562444	3L_6562444_SNP [dm3] 3L_6569344_SNP [dm6]	C	G	3.396e^-4	0.693	INTRON CG18769 & 1 other
3L	10781177	3L_10781177_SNP [dm3] 3L_10788077_SNP [dm6]	G	C	3.396e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9375607	2L_9375607_SNP [dm3] 2L_9375607_SNP [dm6]	C	T	3.400e^-4	0.693	INTRON Shawl
2R	20097131	2R_20097131_SNP [dm3] 2R_24209608_SNP [dm6]	G	C	3.403e^-4	0.693	INTERGENIC
3R	14125359	3R_14125359_SNP [dm3] 3R_18299637_SNP [dm6]	T	C	3.403e^-4	0.693	SYNONYMOUS_CODING Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3095456	3L_3095456_SNP [dm3] 3L_3095456_SNP [dm6]	T	A	3.413e^-4	0.693	UPSTREAM tRNA:CR32288 & 2 others INTRON Cht7
3L	18379116	3L_18379116_DEL [dm3] 3L_18386016_DEL [dm6]	TCAACTACTT	T	3.415e^-4	0.693	INTERGENIC
3L	19415234	3L_19415234_SNP [dm3] 3L_19422134_SNP [dm6]	A	T	3.416e^-4	0.693	DOWNSTREAM CR32205 INTERGENIC
2L	1540013	2L_1540013_SNP [dm3] 2L_1540013_SNP [dm6]	T	C	3.418e^-4	0.693	INTERGENIC
3L	14334467	3L_14334467_SNP [dm3] 3L_14341367_SNP [dm6]	G	C	3.426e^-4	0.693	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	1976085	2L_1976085_SNP [dm3] 2L_1976085_SNP [dm6]	T	G	3.440e^-4	0.693	UTR_3_PRIME CG15356 DOWNSTREAM Der-1	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8627383	2L_8627383_INS [dm3] 2L_8627383_INS [dm6]	T	TTCGGTT	3.441e^-4	0.693	INTRON Sema-1a
2L	12721545	2L_12721545_SNP [dm3] 2L_12721545_SNP [dm6]	A	G	3.441e^-4	0.693	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	20022896	2R_20022896_SNP [dm3] 2R_24135373_SNP [dm6]	A	T	3.447e^-4	0.693	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3L	4214442	3L_4214442_SNP [dm3] 3L_4214442_SNP [dm6]	G	C	3.450e^-4	0.693	UPSTREAM Cpr64Ad INTRON CG43367	TF binding site mE1_TFBS_cad
3L	2374536	3L_2374536_SNP [dm3] 3L_2374536_SNP [dm6]	T	A	3.452e^-4	0.693	NON_SYNONYMOUS_CODING CG9004 UPSTREAM mRpL23	TF binding site mE1_TFBS_HSA
2R	12670084	2R_12670084_SNP [dm3] 2R_16782579_SNP [dm6]	T	C	3.453e^-4	0.693	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14040733	3R_14040733_SNP [dm3] 3R_18215011_SNP [dm6]	C	T	3.459e^-4	0.693	DOWNSTREAM CG7985 INTERGENIC
2L	3304327	2L_3304327_SNP [dm3] 2L_3304327_SNP [dm6]	C	G	3.464e^-4	0.693	UTR_5_PRIME CG3277
2R	18367196	2R_18367196_SNP [dm3] 2R_22479691_SNP [dm6]	A	C	3.468e^-4	0.693	INTRON CG4752	TF binding site mE1_TFBS_cad
3L	15850630	3L_15850630_SNP [dm3] 3L_15857530_SNP [dm6]	A	G	3.470e^-4	0.693	INTRON pHCl
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	3.471e^-4	0.693	INTERGENIC
3L	1452063	3L_1452063_SNP [dm3] 3L_1452063_SNP [dm6]	T	A	3.471e^-4	0.693	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	3945628	2L_3945628_SNP [dm3] 2L_3945628_SNP [dm6]	T	G	3.490e^-4	0.695	INTRON fred
X	6783343	X_6783343_SNP [dm3] X_6889310_SNP [dm6]	G	C	3.490e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3012855	3R_3012855_SNP [dm3] 3R_7187133_SNP [dm6]	T	C	3.491e^-4	0.695	START_GAINED lap UTR_5_PRIME lap UPSTREAM CG10055	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5083330	2L_5083330_SNP [dm3] 2L_5083330_SNP [dm6]	T	A	3.493e^-4	0.695	INTRON pgant5
X	13639533	X_13639533_SNP [dm3] X_13745500_SNP [dm6]	G	A	3.505e^-4	0.696	UPSTREAM Grip91 DOWNSTREAM Pdcd4 & 1 other INTERGENIC
2R	7704007	2R_7704007_SNP [dm3] 2R_11816502_SNP [dm6]	T	C	3.507e^-4	0.696	INTERGENIC
2R	18558126	2R_18558126_SNP [dm3] 2R_22670621_SNP [dm6]	A	G	3.508e^-4	0.696	UTR_5_PRIME RYBP UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	9375642	2L_9375642_SNP [dm3] 2L_9375642_SNP [dm6]	C	G	3.514e^-4	0.696	INTRON Shawl
X	8273242	X_8273242_SNP [dm3] X_8379209_SNP [dm6]	T	A	3.519e^-4	0.696	INTERGENIC
3L	849182	3L_849182_SNP [dm3] 3L_849182_SNP [dm6]	T	C	3.521e^-4	0.696	SPLICE_SITE_REGION CG13889 INTRON CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3521227	2L_3521227_SNP [dm3] 2L_3521227_SNP [dm6]	G	A	3.532e^-4	0.697	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3201516	2L_3201516_SNP [dm3] 2L_3201516_SNP [dm6]	C	T	3.538e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15549105	2L_15549105_SNP [dm3] 2L_15549105_SNP [dm6]	A	T	3.539e^-4	0.697	UPSTREAM CR45728 DOWNSTREAM Skadu INTERGENIC
2L	12721539	2L_12721539_SNP [dm3] 2L_12721539_SNP [dm6]	G	A	3.541e^-4	0.697	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	6683537	2L_6683537_SNP [dm3] 2L_6683537_SNP [dm6]	A	G	3.550e^-4	0.698	UPSTREAM Nhe3 INTRON Nhe3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15954980	3R_15954980_SNP [dm3] 3R_20129258_SNP [dm6]	T	G	3.552e^-4	0.698	INTERGENIC
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	3.561e^-4	0.698	INTRON 5-HT1A
2L	2879909	2L_2879909_SNP [dm3] 2L_2879909_SNP [dm6]	C	T	3.565e^-4	0.698	DOWNSTREAM CG31950 & 1 other INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	26105331	3R_26105331_SNP [dm3] 3R_30279609_SNP [dm6]	T	C	3.570e^-4	0.698	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4836833	2L_4836833_SNP [dm3] 2L_4836833_SNP [dm6]	C	T	3.572e^-4	0.698	SYNONYMOUS_CODING tank	TF binding site mE1_TFBS_sens
2R	10195292	2R_10195292_SNP [dm3] 2R_14307787_SNP [dm6]	C	A	3.574e^-4	0.698	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25562554	3R_25562554_SNP [dm3] 3R_29736832_SNP [dm6]	G	A	3.576e^-4	0.698	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3988466	2L_3988466_SNP [dm3] 2L_3988466_SNP [dm6]	C	T	3.587e^-4	0.699	INTRON fred
2L	3382040	2L_3382040_SNP [dm3] 2L_3382040_SNP [dm6]	G	C	3.591e^-4	0.7	INTERGENIC
3R	20964911	3R_20964911_SNP [dm3] 3R_25139189_SNP [dm6]	T	C	3.602e^-4	0.7	SYNONYMOUS_CODING danr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	11868022	3L_11868022_INS [dm3] 3L_11874922_INS [dm6]	A	ATA	3.607e^-4	0.7	INTRON CG44837
3R	22201847	3R_22201847_INS [dm3] 3R_26376125_INS [dm6]	G	GGGTCAGTTTTATG...	3.609e^-4	0.7	INTERGENIC
3L	10445858	3L_10445858_SNP [dm3] 3L_10452758_SNP [dm6]	G	A	3.610e^-4	0.7	INTERGENIC
3R	25706927	3R_25706927_SNP [dm3] 3R_29881205_SNP [dm6]	A	C	3.619e^-4	0.701	INTRON CG31038
2L	1552947	2L_1552947_DEL [dm3] 2L_1552947_DEL [dm6]	GT	G	3.624e^-4	0.702	INTERGENIC
2L	7114565	2L_7114565_SNP [dm3] 2L_7114565_SNP [dm6]	G	A	3.634e^-4	0.702	INTRON Pvf3
2L	5588848	2L_5588848_SNP [dm3] 2L_5588848_SNP [dm6]	C	T	3.634e^-4	0.702	UPSTREAM CG7251 INTERGENIC
X	11627466	X_11627466_SNP [dm3] X_11733433_SNP [dm6]	T	C	3.644e^-4	0.702	UPSTREAM inaF-B INTRON CG15221 & 1 other
3L	18331854	3L_18331854_SNP [dm3] 3L_18338754_SNP [dm6]	G	A	3.650e^-4	0.702	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	23477119	3R_23477119_SNP [dm3] 3R_27651397_SNP [dm6]	G	C	3.651e^-4	0.702	UTR_3_PRIME tau UPSTREAM tau INTRON tau
3R	12227202	3R_12227202_SNP [dm3] 3R_16401480_SNP [dm6]	A	G	3.654e^-4	0.702	INTRON ss
X	8273246	X_8273246_SNP [dm3] X_8379213_SNP [dm6]	T	A	3.665e^-4	0.702	INTERGENIC
3R	25909586	3R_25909586_SNP [dm3] 3R_30083864_SNP [dm6]	C	T	3.678e^-4	0.702	INTRON sima	TF binding site mE1_TFBS_Trl
2L	4210755	2L_4210755_SNP [dm3] 2L_4210755_SNP [dm6]	T	A	3.686e^-4	0.702	INTRON ft
3R	23546817	3R_23546817_SNP [dm3] 3R_27721095_SNP [dm6]	C	A	3.688e^-4	0.702	INTERGENIC
3R	26169789	3R_26169789_SNP [dm3] 3R_30344067_SNP [dm6]	A	T	3.691e^-4	0.702	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	10915601	2L_10915601_SNP [dm3] 2L_10915601_SNP [dm6]	C	T	3.701e^-4	0.702	INTERGENIC
3R	23520770	3R_23520770_SNP [dm3] 3R_27695048_SNP [dm6]	C	A	3.703e^-4	0.702	UTR_3_PRIME Acp98AB UPSTREAM CG43320 DOWNSTREAM CG43319
3R	14103071	3R_14103071_SNP [dm3] 3R_18277349_SNP [dm6]	A	T	3.705e^-4	0.702	DOWNSTREAM CG7142 INTRON eIF-1A
3R	12706463	3R_12706463_SNP [dm3] 3R_16880741_SNP [dm6]	T	C	3.728e^-4	0.702	INTRON iab-8
2L	13666593	2L_13666593_SNP [dm3] 2L_13666593_SNP [dm6]	T	G	3.737e^-4	0.702	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16848803	3L_16848803_SNP [dm3] 3L_16855703_SNP [dm6]	C	T	3.741e^-4	0.702	UPSTREAM sina INTRON Rh4 & 1 other
X	17164748	X_17164748_SNP [dm3] X_17270715_SNP [dm6]	C	G	3.743e^-4	0.702	INTRON f
X	11072409	X_11072409_SNP [dm3] X_11178376_SNP [dm6]	T	A	3.747e^-4	0.702	INTERGENIC
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	3.751e^-4	0.702	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3L	13102906	3L_13102906_DEL [dm3] 3L_13109806_DEL [dm6]	ATGTCCGA	A	3.754e^-4	0.702	INTERGENIC
2R	14146360	2R_14146360_SNP [dm3] 2R_18258855_SNP [dm6]	T	A	3.762e^-4	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9257280	2L_9257280_SNP [dm3] 2L_9257280_SNP [dm6]	G	T	3.768e^-4	0.702	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10377628	3L_10377628_SNP [dm3] 3L_10384528_SNP [dm6]	G	A	3.771e^-4	0.702	INTERGENIC
2L	9941554	2L_9941554_SNP [dm3] 2L_9941554_SNP [dm6]	C	T	3.776e^-4	0.702	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619	TF binding site mE1_TFBS_sens
3L	17405450	3L_17405450_SNP [dm3] 3L_17412350_SNP [dm6]	T	A	3.780e^-4	0.702	INTRON blot	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22991630	3R_22991630_SNP [dm3] 3R_27165908_SNP [dm6]	A	T	3.782e^-4	0.702	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	7114078	2L_7114078_SNP [dm3] 2L_7114078_SNP [dm6]	G	T	3.788e^-4	0.702	INTRON Pvf3
3L	7307472	3L_7307472_SNP [dm3] 3L_7314372_SNP [dm6]	C	G	3.794e^-4	0.702	INTERGENIC
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	3.808e^-4	0.702	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	3.813e^-4	0.702	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C24 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results