DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.153e^-23)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.1729	0.0023
In_3R_K	13.3753	0.0012

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3016 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.155e^-7	0.138	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	1.467e^-7	0.138	INTRON Cad87A
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	5.229e^-7	0.293	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	8.583e^-7	0.293	INTRON CG14877
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	1.004e^-6	0.293	INTRON CG10237
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.183e^-6	0.293	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	1.311e^-6	0.293	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	1.887e^-6	0.293	INTRON Cad87A
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	2.055e^-6	0.293	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	2.069e^-6	0.293	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	2.091e^-6	0.293	SYNONYMOUS_CODING beat-Vc
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	2.134e^-6	0.293	INTRON Cad87A
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	2.344e^-6	0.293	INTRON salm	TF binding site mE1_TFBS_inv
2L	5439524	2L_5439524_SNP [dm3] 2L_5439524_SNP [dm6]	T	A	2.430e^-6	0.293	UPSTREAM CR31647 INTERGENIC
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	2.963e^-6	0.293	INTRON Cad87A
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	3.073e^-6	0.293	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	3.213e^-6	0.293	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	3.462e^-6	0.293	DOWNSTREAM CG13991 INTERGENIC
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	3.478e^-6	0.293	INTRON Ca-beta
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	3.615e^-6	0.293	INTRON Cad87A
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	3.678e^-6	0.293	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	3.850e^-6	0.293	DOWNSTREAM ntc INTRON CG32264
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	3.886e^-6	0.293	INTRON beat-Vc
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	3.891e^-6	0.293	UPSTREAM CG44521 INTRON sif
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	3.958e^-6	0.293	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	4.082e^-6	0.293	INTRON CG45186
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	4.317e^-6	0.293	INTERGENIC
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	4.486e^-6	0.293	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	4.523e^-6	0.293	INTRON Cad87A
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	4.966e^-6	0.31	INTRON salm	TF binding site mE1_TFBS_inv
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	5.791e^-6	0.34	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	5.799e^-6	0.34	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	6.134e^-6	0.343	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	6.224e^-6	0.343	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	7.496e^-6	0.384	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	8.016e^-6	0.384	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	8.089e^-6	0.384	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	8.242e^-6	0.384	INTRON fru
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	8.639e^-6	0.384	INTRON Cad87A
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	8.705e^-6	0.384	INTRON salm
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	8.776e^-6	0.384	INTERGENIC
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	8.907e^-6	0.384	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3L	8196494	3L_8196494_SNP [dm3] 3L_8203394_SNP [dm6]	G	A	9.023e^-6	0.384	UPSTREAM CG7366 DOWNSTREAM CG13679 INTERGENIC
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	9.059e^-6	0.384	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	9.427e^-6	0.384	INTRON Cad87A
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	9.586e^-6	0.384	INTRON Cad87A
3R	10186956	3R_10186956_SNP [dm3] 3R_14361234_SNP [dm6]	T	A	9.835e^-6	0.384	UTR_5_PRIME CG31320 INTRON NK7.1
3L	5962353	3L_5962353_SNP [dm3] 3L_5969253_SNP [dm6]	C	T	1.037e^-5	0.384	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	1.039e^-5	0.384	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3R	13087936	3R_13087936_SNP [dm3] 3R_17262214_SNP [dm6]	A	G	1.056e^-5	0.384	INTRON beat-IIb
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.121e^-5	0.384	INTRON salm
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	1.137e^-5	0.384	INTERGENIC
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	1.142e^-5	0.384	INTERGENIC
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	1.142e^-5	0.384	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	1.144e^-5	0.384	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3L	3755751	3L_3755751_MNP [dm3] 3L_3755751_MNP [dm6]	GCC	CAA	1.146e^-5	0.384	UPSTREAM ppk27 INTRON CG32264
3R	7727598	3R_7727598_SNP [dm3] 3R_11901876_SNP [dm6]	T	C	1.179e^-5	0.388	SYNONYMOUS_CODING Cad87A
3L	8100732	3L_8100732_SNP [dm3] 3L_8107632_SNP [dm6]	C	T	1.205e^-5	0.389	INTRON Ect4	TF binding site BDTNP1_TFBS_twi
3R	7727619	3R_7727619_SNP [dm3] 3R_11901897_SNP [dm6]	G	A	1.237e^-5	0.389	SYNONYMOUS_CODING Cad87A
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	1.244e^-5	0.389	INTRON beat-Vc
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	1.272e^-5	0.391	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	1.347e^-5	0.408	INTRON salm
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	1.388e^-5	0.413	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2936931	2L_2936931_SNP [dm3] 2L_2936931_SNP [dm6]	C	A	1.451e^-5	0.416	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.453e^-5	0.416	INTRON 4EHP
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	1.505e^-5	0.416	INTRON beat-Vc
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	1.512e^-5	0.416	INTRON salm
3R	7114083	3R_7114083_SNP [dm3] 3R_11288361_SNP [dm6]	C	G	1.555e^-5	0.416	INTRON CR31386
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	1.571e^-5	0.416	INTERGENIC
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	1.576e^-5	0.416	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	1.672e^-5	0.416	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	1.674e^-5	0.416	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20898816	3R_20898816_SNP [dm3] 3R_25073094_SNP [dm6]	A	G	1.679e^-5	0.416	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3R	8885665	3R_8885665_SNP [dm3] 3R_13059943_SNP [dm6]	A	G	1.688e^-5	0.416	INTRON sim	TF binding site BDTNP1_TFBS_prd
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	1.727e^-5	0.416	INTRON Octbeta3R
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	1.745e^-5	0.416	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	1.747e^-5	0.416	INTRON Cad87A
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	1.749e^-5	0.416	INTRON salm
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	1.759e^-5	0.416	UPSTREAM CG10635 & 1 other INTERGENIC
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	1.797e^-5	0.416	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
X	7243100	X_7243100_SNP [dm3] X_7349067_SNP [dm6]	C	T	1.811e^-5	0.416	INTRON CR44357 & 1 other
3R	11587690	3R_11587690_SNP [dm3] 3R_15761968_SNP [dm6]	T	C	1.834e^-5	0.416	INTERGENIC
2R	10071218	2R_10071218_SNP [dm3] 2R_14183713_SNP [dm6]	T	A	1.839e^-5	0.416	DOWNSTREAM cg INTERGENIC
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	1.886e^-5	0.421	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	1.914e^-5	0.422	INTRON Ca-beta
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	1.957e^-5	0.424	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	1.991e^-5	0.424	INTRON Cad87A
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	1.992e^-5	0.424	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	2.010e^-5	0.424	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8888572	3R_8888572_INS [dm3] 3R_13062850_INS [dm6]	T	TACGGTTTATAGT...	2.064e^-5	0.43	INTRON sim
3R	7751030	3R_7751030_SNP [dm3] 3R_11925308_SNP [dm6]	T	A	2.161e^-5	0.438	INTRON Cad87A
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	2.162e^-5	0.438	INTRON salm
3R	14284899	3R_14284899_SNP [dm3] 3R_18459177_SNP [dm6]	G	A	2.193e^-5	0.438	INTRON fru	TF binding site mE1_TFBS_inv
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	2.197e^-5	0.438	INTRON par-1
X	11227495	X_11227495_SNP [dm3] X_11333462_SNP [dm6]	C	T	2.264e^-5	0.438	SYNONYMOUS_CODING CG1657 DOWNSTREAM Kap3	TF binding site mE1_TFBS_cad
2L	14694482	2L_14694482_SNP [dm3] 2L_14694482_SNP [dm6]	T	C	2.288e^-5	0.438	INTERGENIC
3R	7112350	3R_7112350_SNP [dm3] 3R_11286628_SNP [dm6]	G	A	2.297e^-5	0.438	INTRON CR31386
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	2.346e^-5	0.438	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3755798	3L_3755798_SNP [dm3] 3L_3755798_SNP [dm6]	C	G	2.351e^-5	0.438	UPSTREAM ppk27 INTRON CG32264
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	2.366e^-5	0.438	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19236942	2R_19236942_SNP [dm3] 2R_23349419_SNP [dm6]	G	C	2.384e^-5	0.438	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	2.398e^-5	0.438	DOWNSTREAM CG15483 INTERGENIC
2L	10960337	2L_10960337_SNP [dm3] 2L_10960337_SNP [dm6]	C	T	2.405e^-5	0.438	INTRON dpr2
3L	3755925	3L_3755925_SNP [dm3] 3L_3755925_SNP [dm6]	A	G	2.448e^-5	0.442	UPSTREAM ppk27 INTRON CG32264
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	2.515e^-5	0.444	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	8207093	2R_8207093_SNP [dm3] 2R_12319588_SNP [dm6]	G	T	2.542e^-5	0.444	INTERGENIC
X	6879881	X_6879881_SNP [dm3] X_6985848_SNP [dm6]	A	G	2.547e^-5	0.444	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	5962265	3L_5962265_SNP [dm3] 3L_5969165_SNP [dm6]	C	T	2.569e^-5	0.444	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	2.580e^-5	0.444	INTERGENIC
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	2.685e^-5	0.458	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3L	5878479	3L_5878479_SNP [dm3] 3L_5885379_SNP [dm6]	A	G	2.791e^-5	0.458	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	2714565	3R_2714565_SNP [dm3] 3R_6888843_SNP [dm6]	T	A	2.798e^-5	0.458	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2323740	3R_2323740_SNP [dm3] 3R_6498018_SNP [dm6]	C	A	2.807e^-5	0.458	INTERGENIC
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	2.827e^-5	0.458	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	2.846e^-5	0.458	INTRON salm
2L	9809585	2L_9809585_SNP [dm3] 2L_9809585_SNP [dm6]	C	T	2.882e^-5	0.458	INTRON nAChRalpha6
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	2.889e^-5	0.458	INTRON Cad87A
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.901e^-5	0.458	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	2.913e^-5	0.458	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	2.933e^-5	0.458	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	3.024e^-5	0.46	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19426685	2L_19426685_SNP [dm3] 2L_19426685_SNP [dm6]	G	A	3.038e^-5	0.46	UTR_5_PRIME CG16771 & 1 other UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11438048	3R_11438048_SNP [dm3] 3R_15612326_SNP [dm6]	C	A	3.039e^-5	0.46	INTERGENIC
3L	2490817	3L_2490817_SNP [dm3] 3L_2490817_SNP [dm6]	T	G	3.047e^-5	0.46	START_GAINED CG1146 UTR_5_PRIME CG1146 INTRON CG45186 & 1 other
2L	14694475	2L_14694475_SNP [dm3] 2L_14694475_SNP [dm6]	T	C	3.122e^-5	0.46	INTERGENIC
3R	13713485	3R_13713485_SNP [dm3] 3R_17887763_SNP [dm6]	G	A	3.127e^-5	0.46	INTRON Rim
3R	8579630	3R_8579630_SNP [dm3] 3R_12753908_SNP [dm6]	G	A	3.137e^-5	0.46	INTRON beat-Vc
2R	13435262	2R_13435262_SNP [dm3] 2R_17547757_SNP [dm6]	C	T	3.173e^-5	0.46	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11603926	2R_11603926_SNP [dm3] 2R_15716421_SNP [dm6]	A	T	3.190e^-5	0.46	INTERGENIC
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	3.227e^-5	0.46	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	3.237e^-5	0.46	INTRON salm
2L	10866751	2L_10866751_SNP [dm3] 2L_10866751_SNP [dm6]	G	A	3.289e^-5	0.46	INTERGENIC
2R	12488483	2R_12488483_SNP [dm3] 2R_16600978_SNP [dm6]	A	C	3.302e^-5	0.46	DOWNSTREAM CG5089 INTRON CG8303
2R	7049962	2R_7049962_SNP [dm3] 2R_11162457_SNP [dm6]	T	C	3.321e^-5	0.46	INTRON shn & 1 other
2R	11736495	2R_11736495_SNP [dm3] 2R_15848990_SNP [dm6]	C	T	3.429e^-5	0.46	UTR_5_PRIME tun
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	3.465e^-5	0.46	UTR_5_PRIME CG11686 UPSTREAM Ace
3R	22829028	3R_22829028_SNP [dm3] 3R_27003306_SNP [dm6]	G	A	3.472e^-5	0.46	UTR_3_PRIME CG6296 DOWNSTREAM CG31077 INTRON RYa-R
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	3.545e^-5	0.46	INTRON salm
3L	18850157	3L_18850157_SNP [dm3] 3L_18857057_SNP [dm6]	G	A	3.554e^-5	0.46	EXON CR45388
3L	12475243	3L_12475243_SNP [dm3] 3L_12482143_SNP [dm6]	C	G	3.574e^-5	0.46	UPSTREAM CG33725 INTRON CG10663
3R	2163276	3R_2163276_SNP [dm3] 3R_6337554_SNP [dm6]	A	C	3.611e^-5	0.46	DOWNSTREAM Osi19 INTERGENIC
2L	11320242	2L_11320242_SNP [dm3] 2L_11320242_SNP [dm6]	T	G	3.619e^-5	0.46	DOWNSTREAM CR44583 INTERGENIC
3R	7967624	3R_7967624_SNP [dm3] 3R_12141902_SNP [dm6]	C	G	3.686e^-5	0.46	INTRON dpr15	TF binding site BDTNP1_TFBS_da
2L	10867109	2L_10867109_INS [dm3] 2L_10867109_INS [dm6]	G	GG	3.694e^-5	0.46	INTERGENIC
3L	752862	3L_752862_DEL [dm3] 3L_752862_DEL [dm6]	TGGAA	T	3.705e^-5	0.46	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	3.754e^-5	0.46	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	3.767e^-5	0.46	INTRON Cyp313a4
3R	24660106	3R_24660106_SNP [dm3] 3R_28834384_SNP [dm6]	T	A	3.818e^-5	0.46	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3L	15774762	3L_15774762_SNP [dm3] 3L_15781662_SNP [dm6]	G	T	3.822e^-5	0.46	INTERGENIC
X	22136664	X_22136664_SNP [dm3] X_22734828_SNP [dm6]	G	T	3.830e^-5	0.46	INTRON CR44997
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	3.836e^-5	0.46	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3L	2604424	3L_2604424_SNP [dm3] 3L_2604424_SNP [dm6]	G	T	3.866e^-5	0.46	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	3.882e^-5	0.46	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	3.888e^-5	0.46	INTRON Fhos
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	3.897e^-5	0.46	INTERGENIC
2L	11448546	2L_11448546_SNP [dm3] 2L_11448546_SNP [dm6]	C	A	3.901e^-5	0.46	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	3.901e^-5	0.46	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	3.914e^-5	0.46	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	4.003e^-5	0.46	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7734348	3R_7734348_SNP [dm3] 3R_11908626_SNP [dm6]	T	C	4.014e^-5	0.46	INTRON Cad87A
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	4.047e^-5	0.46	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12712338	3R_12712338_SNP [dm3] 3R_16886616_SNP [dm6]	G	T	4.055e^-5	0.46	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	15898950	2L_15898950_SNP [dm3] 2L_15898950_SNP [dm6]	A	G	4.058e^-5	0.46	SYNONYMOUS_CODING CG31823	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	4.070e^-5	0.46	INTERGENIC
2L	886010	2L_886010_SNP [dm3] 2L_886010_SNP [dm6]	G	A	4.081e^-5	0.46	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16662131	2R_16662131_SNP [dm3] 2R_20774626_SNP [dm6]	A	C	4.128e^-5	0.46	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	4.133e^-5	0.46	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	4.171e^-5	0.46	INTRON salm
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	4.178e^-5	0.46	INTRON NaPi-T
3L	2604371	3L_2604371_SNP [dm3] 3L_2604371_SNP [dm6]	G	A	4.211e^-5	0.46	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9083721	2L_9083721_SNP [dm3] 2L_9083721_SNP [dm6]	C	A	4.245e^-5	0.46	UPSTREAM Toll-4 INTERGENIC
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	4.245e^-5	0.46	INTRON salm
3L	3755737	3L_3755737_DEL [dm3] 3L_3755737_DEL [dm6]	TATATGT	T	4.246e^-5	0.46	UPSTREAM ppk27 INTRON CG32264
3R	6640823	3R_6640823_DEL [dm3] 3R_10815101_DEL [dm6]	GGCTCTAAG	G	4.280e^-5	0.461	UPSTREAM CG4089 & 1 other INTERGENIC
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	4.388e^-5	0.461	INTERGENIC
2R	16662109	2R_16662109_SNP [dm3] 2R_20774604_SNP [dm6]	T	C	4.412e^-5	0.461	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3696446	2L_3696446_SNP [dm3] 2L_3696446_SNP [dm6]	A	G	4.445e^-5	0.461	SYNONYMOUS_CODING CG16712 DOWNSTREAM CG3604
2L	10900513	2L_10900513_SNP [dm3] 2L_10900513_SNP [dm6]	C	A	4.454e^-5	0.461	UTR_3_PRIME CG14070 DOWNSTREAM CG14070
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	4.470e^-5	0.461	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	4.508e^-5	0.461	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	4.551e^-5	0.461	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	4.559e^-5	0.461	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12143450	2L_12143450_SNP [dm3] 2L_12143450_SNP [dm6]	A	T	4.579e^-5	0.461	INTRON CG31760
2L	12143452	2L_12143452_SNP [dm3] 2L_12143452_SNP [dm6]	A	T	4.579e^-5	0.461	INTRON CG31760
3L	12424997	3L_12424997_INS [dm3] 3L_12431897_INS [dm6]	T	TC	4.683e^-5	0.461	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	5422635	3R_5422635_SNP [dm3] 3R_9596913_SNP [dm6]	A	T	4.683e^-5	0.461	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1288454	3L_1288454_SNP [dm3] 3L_1288454_SNP [dm6]	A	G	4.700e^-5	0.461	DOWNSTREAM CG32333 INTRON CG32333
2R	19415959	2R_19415959_SNP [dm3] 2R_23528436_SNP [dm6]	G	A	4.720e^-5	0.461	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	4.740e^-5	0.461	INTRON par-1
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	4.776e^-5	0.461	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	7116304	3R_7116304_SNP [dm3] 3R_11290582_SNP [dm6]	C	A	4.837e^-5	0.461	INTRON CR31386
2L	4976664	2L_4976664_SNP [dm3] 2L_4976664_SNP [dm6]	T	G	4.864e^-5	0.461	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
3R	22829384	3R_22829384_SNP [dm3] 3R_27003662_SNP [dm6]	C	A	4.869e^-5	0.461	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7952376	3R_7952376_SNP [dm3] 3R_12126654_SNP [dm6]	A	G	4.908e^-5	0.461	INTRON CG4702
X	14542870	X_14542870_SNP [dm3] X_14648837_SNP [dm6]	C	T	4.961e^-5	0.461	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	4.973e^-5	0.461	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	4.979e^-5	0.461	SYNONYMOUS_CODING NaPi-T
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	4.997e^-5	0.461	INTRON salm
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	5.006e^-5	0.461	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18951166	2R_18951166_SNP [dm3] 2R_23063643_SNP [dm6]	C	T	5.017e^-5	0.461	SYNONYMOUS_CODING CG9890	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1725692	3L_1725692_SNP [dm3] 3L_1725692_SNP [dm6]	A	T	5.041e^-5	0.461	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	5.042e^-5	0.461	INTRON Octbeta3R
X	6879912	X_6879912_SNP [dm3] X_6985879_SNP [dm6]	G	A	5.073e^-5	0.461	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	17152836	2L_17152836_SNP [dm3] 2L_17152836_SNP [dm6]	G	A	5.094e^-5	0.461	INTRON beat-IIIa & 1 other
2R	19664210	2R_19664210_SNP [dm3] 2R_23776687_SNP [dm6]	A	G	5.097e^-5	0.461	INTRON CG9850
3R	7735910	3R_7735910_SNP [dm3] 3R_11910188_SNP [dm6]	G	T	5.118e^-5	0.461	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	5.179e^-5	0.461	INTRON H2.0
3R	24659989	3R_24659989_SNP [dm3] 3R_28834267_SNP [dm6]	G	A	5.180e^-5	0.461	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	19592587	3R_19592587_SNP [dm3] 3R_23766865_SNP [dm6]	A	G	5.207e^-5	0.461	SYNONYMOUS_CODING CG10214 UPSTREAM CG10375 DOWNSTREAM Lsd-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	2490805	3L_2490805_MNP [dm3] 3L_2490805_MNP [dm6]	ACA	GTG	5.245e^-5	0.461	UTR_5_PRIME CG1146 INTRON CG45186 & 1 other
3R	7118429	3R_7118429_SNP [dm3] 3R_11292707_SNP [dm6]	A	T	5.249e^-5	0.461	INTRON CR31386
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	5.298e^-5	0.461	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	5.325e^-5	0.461	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12769980	3L_12769980_SNP [dm3] 3L_12776880_SNP [dm6]	G	T	5.339e^-5	0.461	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	5.356e^-5	0.461	INTERGENIC
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	5.376e^-5	0.461	INTRON salm
3L	19960304	3L_19960304_SNP [dm3] 3L_19967204_SNP [dm6]	T	C	5.412e^-5	0.461	INTRON Ac76E
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	5.427e^-5	0.461	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	11442524	2L_11442524_SNP [dm3] 2L_11442524_SNP [dm6]	G	T	5.444e^-5	0.461	INTRON salm
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	5.553e^-5	0.461	INTRON 4EHP
3R	22115699	3R_22115699_SNP [dm3] 3R_26289977_SNP [dm6]	A	G	5.555e^-5	0.461	INTERGENIC
X	8949407	X_8949407_SNP [dm3] X_9055374_SNP [dm6]	T	C	5.572e^-5	0.461	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
2R	8207960	2R_8207960_SNP [dm3] 2R_12320455_SNP [dm6]	A	T	5.585e^-5	0.461	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	5.596e^-5	0.461	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	5.619e^-5	0.461	INTRON salm
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	5.673e^-5	0.461	INTRON CG14395
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	5.679e^-5	0.461	INTERGENIC
2L	11442663	2L_11442663_SNP [dm3] 2L_11442663_SNP [dm6]	A	T	5.704e^-5	0.461	INTRON salm
3R	14451797	3R_14451797_SNP [dm3] 3R_18626075_SNP [dm6]	T	A	5.725e^-5	0.461	INTRON qin
X	8465162	X_8465162_SNP [dm3] X_8571129_SNP [dm6]	C	A	5.744e^-5	0.461	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
2L	4976712	2L_4976712_SNP [dm3] 2L_4976712_SNP [dm6]	A	G	5.763e^-5	0.461	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
2R	20274488	2R_20274488_SNP [dm3] 2R_24386965_SNP [dm6]	A	G	5.774e^-5	0.461	INTRON mAChR-A
2L	10923897	2L_10923897_SNP [dm3] 2L_10923897_SNP [dm6]	G	A	5.853e^-5	0.461	INTRON dpr2
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	5.854e^-5	0.461	INTRON Cad87A
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	5.855e^-5	0.461	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13088026	3R_13088026_SNP [dm3] 3R_17262304_SNP [dm6]	T	A	5.859e^-5	0.461	INTRON beat-IIb
2R	20274604	2R_20274604_SNP [dm3] 2R_24387081_SNP [dm6]	T	G	5.881e^-5	0.461	INTRON mAChR-A
3R	7735703	3R_7735703_SNP [dm3] 3R_11909981_SNP [dm6]	A	G	5.883e^-5	0.461	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10106096	2R_10106096_SNP [dm3] 2R_14218591_SNP [dm6]	C	A	5.894e^-5	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	10072435	2R_10072435_SNP [dm3] 2R_14184930_SNP [dm6]	G	A	5.941e^-5	0.461	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7746303	3R_7746303_SNP [dm3] 3R_11920581_SNP [dm6]	A	C	5.964e^-5	0.461	INTRON Cad87A
3L	14205797	3L_14205797_SNP [dm3] 3L_14212697_SNP [dm6]	A	T	6.002e^-5	0.461	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	4444142	X_4444142_SNP [dm3] X_4550109_SNP [dm6]	A	T	6.017e^-5	0.461	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	6.036e^-5	0.461	INTRON capu	TF binding site mE1_TFBS_bab1
3R	23121638	3R_23121638_SNP [dm3] 3R_27295916_SNP [dm6]	G	A	6.053e^-5	0.461	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	6.067e^-5	0.461	UPSTREAM CG10126 INTERGENIC
3R	6837749	3R_6837749_SNP [dm3] 3R_11012027_SNP [dm6]	G	C	6.083e^-5	0.461	SYNONYMOUS_CODING CG34114
3R	22115690	3R_22115690_SNP [dm3] 3R_26289968_SNP [dm6]	T	A	6.098e^-5	0.461	INTERGENIC
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	6.171e^-5	0.465	INTRON Cad87A
3L	8859773	3L_8859773_SNP [dm3] 3L_8866673_SNP [dm6]	A	G	6.309e^-5	0.473	INTRON dally
2R	7452430	2R_7452430_DEL [dm3] 2R_11564925_DEL [dm6]	GCCG	G	6.352e^-5	0.473	INTERGENIC
2R	19666257	2R_19666257_SNP [dm3] 2R_23778734_SNP [dm6]	C	T	6.390e^-5	0.473	INTRON CG9850
3L	13116862	3L_13116862_SNP [dm3] 3L_13123762_SNP [dm6]	C	T	6.402e^-5	0.473	INTERGENIC
3L	8756850	3L_8756850_INS [dm3] 3L_8763750_INS [dm6]	C	CC	6.481e^-5	0.473	INTRON Fhos
X	8683022	X_8683022_SNP [dm3] X_8788989_SNP [dm6]	A	G	6.483e^-5	0.473	INTRON Lim1
3R	24662235	3R_24662235_SNP [dm3] 3R_28836513_SNP [dm6]	C	A	6.496e^-5	0.473	INTRON Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	6.536e^-5	0.473	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
2L	11194445	2L_11194445_SNP [dm3] 2L_11194445_SNP [dm6]	G	T	6.552e^-5	0.473	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14205821	3L_14205821_SNP [dm3] 3L_14212721_SNP [dm6]	T	A	6.557e^-5	0.473	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	5169440	2L_5169440_SNP [dm3] 2L_5169440_SNP [dm6]	T	C	6.561e^-5	0.473	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	6.653e^-5	0.474	INTRON salm
3R	20898781	3R_20898781_SNP [dm3] 3R_25073059_SNP [dm6]	C	T	6.674e^-5	0.474	NON_SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
2L	11889601	2L_11889601_SNP [dm3] 2L_11889601_SNP [dm6]	C	A	6.699e^-5	0.474	INTRON Pde1c
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	6.709e^-5	0.474	UPSTREAM CG6527 INTRON A2bp1
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	6.717e^-5	0.474	INTERGENIC
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	6.743e^-5	0.474	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2L	5676707	2L_5676707_DEL [dm3] 2L_5676707_DEL [dm6]	CC	C	6.767e^-5	0.474	INTERGENIC
2L	1631137	2L_1631137_SNP [dm3] 2L_1631137_SNP [dm6]	T	G	6.778e^-5	0.474	INTERGENIC
2R	19216210	2R_19216210_INS [dm3] 2R_23328687_INS [dm6]	C	CAGAGATCCCATA...	6.915e^-5	0.476	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12425020	3L_12425020_SNP [dm3] 3L_12431920_SNP [dm6]	T	G	6.926e^-5	0.476	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	6.936e^-5	0.476	UPSTREAM CG13801 INTERGENIC
3L	9328572	3L_9328572_SNP [dm3] 3L_9335472_SNP [dm6]	C	T	6.943e^-5	0.476	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	6.943e^-5	0.476	UPSTREAM CG11686 & 1 other INTERGENIC
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	6.954e^-5	0.476	UTR_5_PRIME CG15186
2L	6859812	2L_6859812_SNP [dm3] 2L_6859812_SNP [dm6]	C	G	7.018e^-5	0.476	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14423107	2L_14423107_SNP [dm3] 2L_14423107_SNP [dm6]	T	A	7.023e^-5	0.476	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9658738	3R_9658738_SNP [dm3] 3R_13833016_SNP [dm6]	G	A	7.026e^-5	0.476	DOWNSTREAM Nsf2 INTERGENIC
2L	13707344	2L_13707344_SNP [dm3] 2L_13707344_SNP [dm6]	G	A	7.088e^-5	0.478	UPSTREAM CG7311 INTRON CG31814
2R	10072409	2R_10072409_SNP [dm3] 2R_14184904_SNP [dm6]	T	C	7.115e^-5	0.478	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7740692	3R_7740692_SNP [dm3] 3R_11914970_SNP [dm6]	A	T	7.202e^-5	0.478	INTRON Cad87A
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	7.214e^-5	0.478	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3756352	3L_3756352_SNP [dm3] 3L_3756352_SNP [dm6]	G	C	7.291e^-5	0.478	INTRON CG32264	TF binding site mE1_TFBS_Trl
3L	9605920	3L_9605920_SNP [dm3] 3L_9612820_SNP [dm6]	G	A	7.301e^-5	0.478	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7696702	2L_7696702_SNP [dm3] 2L_7696702_SNP [dm6]	A	C	7.303e^-5	0.478	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	7.304e^-5	0.478	INTERGENIC
X	8814616	X_8814616_SNP [dm3] X_8920583_SNP [dm6]	T	C	7.329e^-5	0.478	UPSTREAM CR44111 INTRON rdgA
3R	2221938	3R_2221938_SNP [dm3] 3R_6396216_SNP [dm6]	C	T	7.351e^-5	0.478	INTRON Dmtn
3L	5888500	3L_5888500_SNP [dm3] 3L_5895400_SNP [dm6]	C	T	7.390e^-5	0.478	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	7.416e^-5	0.478	INTRON mAChR-A	TF binding site mE1_TFBS_cad
3R	23442945	3R_23442945_SNP [dm3] 3R_27617223_SNP [dm6]	C	T	7.472e^-5	0.478	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	7.479e^-5	0.478	SYNONYMOUS_CODING Lim1
3R	8464121	3R_8464121_SNP [dm3] 3R_12638399_SNP [dm6]	G	T	7.497e^-5	0.478	UPSTREAM CG11608 DOWNSTREAM CG11600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4660364	2R_4660364_SNP [dm3] 2R_8772859_SNP [dm6]	G	C	7.521e^-5	0.478	INTERGENIC
2R	10106093	2R_10106093_SNP [dm3] 2R_14218588_SNP [dm6]	T	A	7.562e^-5	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	23421655	3R_23421655_SNP [dm3] 3R_27595933_SNP [dm6]	G	T	7.615e^-5	0.478	UTR_5_PRIME CG5639	TF binding site mE1_TFBS_inv
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	7.653e^-5	0.478	INTERGENIC
2R	15365766	2R_15365766_SNP [dm3] 2R_19478261_SNP [dm6]	G	C	7.682e^-5	0.478	INTRON par-1
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	7.688e^-5	0.478	INTERGENIC
3L	9425183	3L_9425183_SNP [dm3] 3L_9432083_SNP [dm6]	A	G	7.703e^-5	0.478	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12542111	X_12542111_SNP [dm3] X_12648078_SNP [dm6]	C	G	7.746e^-5	0.478	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8198528	2R_8198528_SNP [dm3] 2R_12311023_SNP [dm6]	T	C	7.841e^-5	0.478	NON_SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
2L	7696708	2L_7696708_SNP [dm3] 2L_7696708_SNP [dm6]	A	C	7.848e^-5	0.478	NON_SYNONYMOUS_CODING Tep2 INTRON Tep2
2R	5031437	2R_5031437_SNP [dm3] 2R_9143932_SNP [dm6]	C	G	7.887e^-5	0.478	UPSTREAM Prp38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15096239	X_15096239_SNP [dm3] X_15202206_SNP [dm6]	C	T	7.946e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	7.950e^-5	0.478	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	7.958e^-5	0.478	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15898965	2L_15898965_SNP [dm3] 2L_15898965_SNP [dm6]	C	T	7.959e^-5	0.478	SYNONYMOUS_CODING CG31823	TF binding site mE1_TFBS_inv
3L	3317650	3L_3317650_DEL [dm3] 3L_3317650_DEL [dm6]	AACTTCTGGGA...	A	7.963e^-5	0.478	DOWNSTREAM PIG-C & 1 other INTERGENIC
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	7.974e^-5	0.478	INTRON salm
3L	1595582	3L_1595582_SNP [dm3] 3L_1595582_SNP [dm6]	G	A	7.981e^-5	0.478	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10886542	2L_10886542_SNP [dm3] 2L_10886542_SNP [dm6]	G	A	8.001e^-5	0.478	INTRON CR44490
2R	13436784	2R_13436784_SNP [dm3] 2R_17549279_SNP [dm6]	G	C	8.038e^-5	0.478	NON_SYNONYMOUS_CODING MESR4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10186934	3R_10186934_SNP [dm3] 3R_14361212_SNP [dm6]	A	C	8.040e^-5	0.478	START_GAINED CG31320 UTR_5_PRIME CG31320 INTRON NK7.1
2R	8410480	2R_8410480_SNP [dm3] 2R_12522975_SNP [dm6]	G	T	8.053e^-5	0.478	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
2R	8410494	2R_8410494_SNP [dm3] 2R_12522989_SNP [dm6]	G	A	8.053e^-5	0.478	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
3R	14406278	3R_14406278_SNP [dm3] 3R_18580556_SNP [dm6]	C	G	8.077e^-5	0.478	INTRON fray & 1 other
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	8.084e^-5	0.478	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	8.185e^-5	0.48	INTRON Cad87A
X	8949470	X_8949470_SNP [dm3] X_9055437_SNP [dm6]	T	G	8.225e^-5	0.48	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
2L	12578447	2L_12578447_SNP [dm3] 2L_12578447_SNP [dm6]	T	A	8.227e^-5	0.48	INTERGENIC
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	8.270e^-5	0.48	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12938488	3R_12938488_SNP [dm3] 3R_17112766_SNP [dm6]	G	C	8.275e^-5	0.48	INTRON cher	TF binding site mE1_TFBS_cnc
3L	11502053	3L_11502053_SNP [dm3] 3L_11508953_SNP [dm6]	A	T	8.290e^-5	0.48	UPSTREAM Sgs7 DOWNSTREAM Sgs8 & 1 other INTERGENIC
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	8.309e^-5	0.48	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7296669	2R_7296669_SNP [dm3] 2R_11409164_SNP [dm6]	T	G	8.346e^-5	0.48	SYNONYMOUS_CODING CG30026 DOWNSTREAM CG34054	TF binding site mE1_TFBS_inv
2L	7210991	2L_7210991_SNP [dm3] 2L_7210991_SNP [dm6]	T	A	8.359e^-5	0.48	INTRON CG13784
3L	1288407	3L_1288407_SNP [dm3] 3L_1288407_SNP [dm6]	T	A	8.375e^-5	0.48	DOWNSTREAM CG32333 INTRON CG32333
2L	9663622	2L_9663622_SNP [dm3] 2L_9663622_SNP [dm6]	G	A	8.416e^-5	0.481	INTERGENIC
2R	10069592	2R_10069592_SNP [dm3] 2R_14182087_SNP [dm6]	T	C	8.471e^-5	0.481	UTR_3_PRIME cg
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	8.539e^-5	0.481	INTRON salm
2L	19326852	2L_19326852_SNP [dm3] 2L_19326852_SNP [dm6]	C	T	8.552e^-5	0.481	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	8.572e^-5	0.481	INTRON Octbeta3R
3R	2218960	3R_2218960_SNP [dm3] 3R_6393238_SNP [dm6]	A	T	8.625e^-5	0.481	INTRON Dmtn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	8101361	X_8101361_SNP [dm3] X_8207328_SNP [dm6]	T	C	8.625e^-5	0.481	INTRON sdt
3L	22849982	3L_22849982_SNP [dm3] 3L_22856882_SNP [dm6]	G	A	8.645e^-5	0.481	UPSTREAM CG32459 INTERGENIC
X	12514341	X_12514341_SNP [dm3] X_12620308_SNP [dm6]	A	T	8.665e^-5	0.481	INTRON CG11085	TF binding site BDTNP1_TFBS_sna
3R	8764606	3R_8764606_SNP [dm3] 3R_12938884_SNP [dm6]	G	A	8.681e^-5	0.481	INTERGENIC
X	19271797	X_19271797_SNP [dm3] X_19377764_SNP [dm6]	G	A	8.714e^-5	0.481	INTRON kek5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2490794	3L_2490794_SNP [dm3] 3L_2490794_SNP [dm6]	T	C	8.715e^-5	0.481	UTR_5_PRIME CG1146 INTRON CG45186 & 1 other
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	8.722e^-5	0.481	SYNONYMOUS_CODING GC1
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	8.846e^-5	0.486	INTRON dpr10
2L	15898806	2L_15898806_SNP [dm3] 2L_15898806_SNP [dm6]	T	C	8.856e^-5	0.486	DOWNSTREAM CG31823 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	8.881e^-5	0.486	UPSTREAM CR44343 INTERGENIC
3L	5561727	3L_5561727_SNP [dm3] 3L_5568627_SNP [dm6]	C	T	9.003e^-5	0.491	SYNONYMOUS_CODING Msr-110 UPSTREAM snmRNA:357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6140856	2L_6140856_SNP [dm3] 2L_6140856_SNP [dm6]	G	T	9.076e^-5	0.493	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	9.093e^-5	0.493	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3R	8622699	3R_8622699_SNP [dm3] 3R_12796977_SNP [dm6]	T	C	9.125e^-5	0.493	INTERGENIC
2R	14425360	2R_14425360_SNP [dm3] 2R_18537855_SNP [dm6]	C	T	9.160e^-5	0.494	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14363131	3L_14363131_SNP [dm3] 3L_14370031_SNP [dm6]	G	C	9.258e^-5	0.498	UPSTREAM CG13481 INTERGENIC
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	9.305e^-5	0.498	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	2799791	3R_2799791_SNP [dm3] 3R_6974069_SNP [dm6]	T	C	9.316e^-5	0.498	INTRON Antp	TF binding site mE1_TFBS_bab1
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	9.416e^-5	0.502	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7473847	2R_7473847_SNP [dm3] 2R_11586342_SNP [dm6]	G	A	9.450e^-5	0.502	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	9.472e^-5	0.502	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14363475	3L_14363475_SNP [dm3] 3L_14370375_SNP [dm6]	A	G	9.505e^-5	0.502	UPSTREAM CG13481 INTERGENIC
2R	8720814	2R_8720814_SNP [dm3] 2R_12833309_SNP [dm6]	A	G	9.541e^-5	0.503	INTERGENIC
X	2991712	X_2991712_SNP [dm3] X_3097679_SNP [dm6]	T	C	9.587e^-5	0.504	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	9.775e^-5	0.511	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	9.777e^-5	0.511	INTERGENIC
X	6779358	X_6779358_SNP [dm3] X_6885325_SNP [dm6]	C	A	9.822e^-5	0.511	INTERGENIC
2R	12120427	2R_12120427_SNP [dm3] 2R_16232922_SNP [dm6]	C	T	9.833e^-5	0.511	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	9.931e^-5	0.512	INTERGENIC
2L	2494932	2L_2494932_SNP [dm3] 2L_2494932_SNP [dm6]	C	G	9.950e^-5	0.512	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14423136	2L_14423136_SNP [dm3] 2L_14423136_SNP [dm6]	A	G	9.954e^-5	0.512	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4976870	2L_4976870_SNP [dm3] 2L_4976870_SNP [dm6]	C	T	9.992e^-5	0.512	SYNONYMOUS_CODING Gmd UPSTREAM CG3792	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	4976888	2L_4976888_SNP [dm3] 2L_4976888_SNP [dm6]	C	T	9.992e^-5	0.512	SYNONYMOUS_CODING Gmd UPSTREAM CG3792	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	8883300	2L_8883300_SNP [dm3] 2L_8883300_SNP [dm6]	G	A	1.022e^-4	0.521	INTERGENIC
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	1.024e^-4	0.521	INTRON Ref2
2L	6234109	2L_6234109_SNP [dm3] 2L_6234109_SNP [dm6]	G	A	1.027e^-4	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	1.028e^-4	0.521	INTERGENIC
3R	23442946	3R_23442946_SNP [dm3] 3R_27617224_SNP [dm6]	A	C	1.031e^-4	0.521	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
3R	7724824	3R_7724824_SNP [dm3] 3R_11899102_SNP [dm6]	T	C	1.034e^-4	0.521	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11502115	3L_11502115_SNP [dm3] 3L_11509015_SNP [dm6]	C	A	1.037e^-4	0.521	UTR_3_PRIME Sgs8 UPSTREAM Sgs7 DOWNSTREAM CG33500
3R	24662342	3R_24662342_SNP [dm3] 3R_28836620_SNP [dm6]	G	A	1.038e^-4	0.521	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	1.041e^-4	0.521	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7740796	3R_7740796_DEL [dm3] 3R_11915074_DEL [dm6]	TT	T	1.047e^-4	0.522	INTRON Cad87A
3R	2221973	3R_2221973_SNP [dm3] 3R_6396251_SNP [dm6]	G	T	1.051e^-4	0.523	INTRON Dmtn
2R	16744235	2R_16744235_SNP [dm3] 2R_20856730_SNP [dm6]	G	T	1.055e^-4	0.523	INTERGENIC
2R	6078427	2R_6078427_SNP [dm3] 2R_10190922_SNP [dm6]	T	C	1.070e^-4	0.524	INTRON KCNQ
3R	10187066	3R_10187066_SNP [dm3] 3R_14361344_SNP [dm6]	T	G	1.076e^-4	0.524	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10394669	3L_10394669_SNP [dm3] 3L_10401569_SNP [dm6]	G	A	1.078e^-4	0.524	INTERGENIC
3R	8542603	3R_8542603_SNP [dm3] 3R_12716881_SNP [dm6]	A	T	1.079e^-4	0.524	INTRON Men
3R	2748664	3R_2748664_SNP [dm3] 3R_6922942_SNP [dm6]	C	T	1.079e^-4	0.524	INTRON Antp	TF binding site BDTNP1_TFBS_dl
X	2992422	X_2992422_SNP [dm3] X_3098389_SNP [dm6]	A	T	1.082e^-4	0.524	INTRON kirre	regulatory region REDfly_CRMs
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	1.083e^-4	0.524	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14952065	2R_14952065_SNP [dm3] 2R_19064560_SNP [dm6]	G	A	1.084e^-4	0.524	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22940921	2L_22940921_SNP [dm3] 2L_23048189_SNP [dm6]	A	G	1.085e^-4	0.524	INTERGENIC
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	1.087e^-4	0.524	UTR_3_PRIME Teh1
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.087e^-4	0.524	UPSTREAM hoe1 INTRON hoe1
2R	11603938	2R_11603938_SNP [dm3] 2R_15716433_SNP [dm6]	C	T	1.090e^-4	0.524	INTERGENIC
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	1.099e^-4	0.527	INTRON salm
2R	12475862	2R_12475862_SNP [dm3] 2R_16588357_SNP [dm6]	C	T	1.104e^-4	0.528	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15185496	3L_15185496_SNP [dm3] 3L_15192396_SNP [dm6]	T	G	1.118e^-4	0.532	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4522092	3L_4522092_SNP [dm3] 3L_4522092_SNP [dm6]	C	T	1.119e^-4	0.532	INTRON Tie
3L	11265932	3L_11265932_SNP [dm3] 3L_11272832_SNP [dm6]	G	A	1.121e^-4	0.532	INTERGENIC
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	1.133e^-4	0.536	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	14423131	2L_14423131_SNP [dm3] 2L_14423131_SNP [dm6]	A	G	1.138e^-4	0.537	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11892865	3L_11892865_SNP [dm3] 3L_11899765_SNP [dm6]	G	A	1.139e^-4	0.537	INTRON CG44837 & 1 other
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	1.149e^-4	0.539	UPSTREAM ppk27 INTRON CG32264
X	6112479	X_6112479_SNP [dm3] X_6218446_SNP [dm6]	T	A	1.158e^-4	0.539	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9545597	3L_9545597_SNP [dm3] 3L_9552497_SNP [dm6]	C	A	1.161e^-4	0.539	INTRON CG42673
2L	11930551	2L_11930551_SNP [dm3] 2L_11930551_SNP [dm6]	G	A	1.164e^-4	0.539	INTERGENIC
X	15075628	X_15075628_SNP [dm3] X_15181595_SNP [dm6]	C	T	1.164e^-4	0.539	INTRON CG43737
X	2991844	X_2991844_SNP [dm3] X_3097811_SNP [dm6]	G	T	1.165e^-4	0.539	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7726206	3R_7726206_SNP [dm3] 3R_11900484_SNP [dm6]	G	A	1.166e^-4	0.539	NON_SYNONYMOUS_CODING Cad87A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5853126	3L_5853126_SNP [dm3] 3L_5860026_SNP [dm6]	A	T	1.169e^-4	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	1.169e^-4	0.539	INTRON beat-Vc
2R	5031073	2R_5031073_SNP [dm3] 2R_9143568_SNP [dm6]	C	A	1.177e^-4	0.539	UPSTREAM Prp38 INTRON shrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19406368	2L_19406368_SNP [dm3] 2L_19406368_SNP [dm6]	C	G	1.178e^-4	0.539	INTRON Pax
2L	22027255	2L_22027255_SNP [dm3] 2L_22027255_SNP [dm6]	G	A	1.179e^-4	0.539	INTERGENIC
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	1.181e^-4	0.539	INTRON CR45668	TF binding site mE1_TFBS_zfh1
3R	7759617	3R_7759617_SNP [dm3] 3R_11933895_SNP [dm6]	G	A	1.183e^-4	0.539	DOWNSTREAM CG14731 INTRON Cad87A
2R	14222122	2R_14222122_SNP [dm3] 2R_18334617_SNP [dm6]	G	T	1.190e^-4	0.54	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14694150	2L_14694150_SNP [dm3] 2L_14694150_SNP [dm6]	C	A	1.195e^-4	0.541	INTERGENIC
2L	13707513	2L_13707513_SNP [dm3] 2L_13707513_SNP [dm6]	G	A	1.200e^-4	0.541	UPSTREAM CG7311 INTRON CG31814
2R	7966488	2R_7966488_SNP [dm3] 2R_12078983_SNP [dm6]	G	A	1.204e^-4	0.541	INTRON CG8888
3L	8757018	3L_8757018_DEL [dm3] 3L_8763918_DEL [dm6]	AT	A	1.206e^-4	0.541	INTRON Fhos
2L	4979370	2L_4979370_SNP [dm3] 2L_4979370_SNP [dm6]	C	T	1.208e^-4	0.541	UTR_5_PRIME CG8891 DOWNSTREAM CG8892 & 1 other	TF binding site mE1_TFBS_chinmo
3L	12475274	3L_12475274_SNP [dm3] 3L_12482174_SNP [dm6]	G	A	1.214e^-4	0.541	UPSTREAM CG33725 INTRON CG10663
3L	5361487	3L_5361487_DEL [dm3] 3L_5368387_DEL [dm6]	AA	A	1.217e^-4	0.541	UPSTREAM CG10635 & 1 other INTERGENIC
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	1.220e^-4	0.541	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5704346	3L_5704346_SNP [dm3] 3L_5711246_SNP [dm6]	G	A	1.220e^-4	0.541	INTRON sif
3L	12769975	3L_12769975_SNP [dm3] 3L_12776875_SNP [dm6]	C	T	1.221e^-4	0.541	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2L	14423078	2L_14423078_SNP [dm3] 2L_14423078_SNP [dm6]	A	T	1.227e^-4	0.542	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1288404	3L_1288404_SNP [dm3] 3L_1288404_SNP [dm6]	A	G	1.231e^-4	0.542	DOWNSTREAM CG32333 INTRON CG32333
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	1.231e^-4	0.542	INTERGENIC
3L	17089422	3L_17089422_SNP [dm3] 3L_17096322_SNP [dm6]	C	G	1.237e^-4	0.542	INTRON Rbp6
3R	7106772	3R_7106772_SNP [dm3] 3R_11281050_SNP [dm6]	A	G	1.237e^-4	0.542	INTRON CR31386
2L	13942414	2L_13942414_SNP [dm3] 2L_13942414_SNP [dm6]	G	T	1.239e^-4	0.542	INTRON Ance-3
2R	11605319	2R_11605319_SNP [dm3] 2R_15717814_SNP [dm6]	A	C	1.243e^-4	0.542	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	12539886	3R_12539886_SNP [dm3] 3R_16714164_SNP [dm6]	C	T	1.249e^-4	0.542	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	1.255e^-4	0.542	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12514387	X_12514387_SNP [dm3] X_12620354_SNP [dm6]	T	A	1.255e^-4	0.542	INTRON CG11085	TF binding site BDTNP1_TFBS_sna
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	1.256e^-4	0.542	INTERGENIC
3L	16362901	3L_16362901_SNP [dm3] 3L_16369801_SNP [dm6]	T	G	1.261e^-4	0.542	UPSTREAM CG18814 DOWNSTREAM CG4842 INTERGENIC
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	1.262e^-4	0.542	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5169427	2L_5169427_SNP [dm3] 2L_5169427_SNP [dm6]	G	A	1.266e^-4	0.542	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	1.266e^-4	0.542	INTRON Cad87A
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	1.269e^-4	0.542	INTRON salm
X	9093722	X_9093722_SNP [dm3] X_9199689_SNP [dm6]	G	A	1.272e^-4	0.542	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2487805	3L_2487805_SNP [dm3] 3L_2487805_SNP [dm6]	T	C	1.280e^-4	0.542	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2479933	3L_2479933_SNP [dm3] 3L_2479933_SNP [dm6]	A	G	1.282e^-4	0.542	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
2R	7050218	2R_7050218_SNP [dm3] 2R_11162713_SNP [dm6]	C	T	1.282e^-4	0.542	INTRON shn & 1 other
2L	8293220	2L_8293220_INS [dm3] 2L_8293220_INS [dm6]	A	AA	1.288e^-4	0.542	INTRON Btk29A
3L	5697781	3L_5697781_SNP [dm3] 3L_5704681_SNP [dm6]	A	T	1.296e^-4	0.542	INTRON sif	TF binding site mE1_TFBS_cad
3R	15225786	3R_15225786_SNP [dm3] 3R_19400064_SNP [dm6]	C	G	1.299e^-4	0.542	SYNONYMOUS_CODING Ino80
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	1.301e^-4	0.542	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6078447	2R_6078447_SNP [dm3] 2R_10190942_SNP [dm6]	A	T	1.301e^-4	0.542	INTRON KCNQ
3L	21583931	3L_21583931_SNP [dm3] 3L_21590831_SNP [dm6]	G	C	1.301e^-4	0.542	INTRON TfAP-2
X	17852210	X_17852210_SNP [dm3] X_17958177_SNP [dm6]	C	T	1.302e^-4	0.542	INTRON Sh
2R	7453624	2R_7453624_SNP [dm3] 2R_11566119_SNP [dm6]	G	A	1.303e^-4	0.542	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	6078448	2R_6078448_SNP [dm3] 2R_10190943_SNP [dm6]	A	T	1.311e^-4	0.544	INTRON KCNQ
3R	7967623	3R_7967623_SNP [dm3] 3R_12141901_SNP [dm6]	T	C	1.314e^-4	0.544	INTRON dpr15	TF binding site BDTNP1_TFBS_da
3L	12174639	3L_12174639_SNP [dm3] 3L_12181539_SNP [dm6]	G	A	1.326e^-4	0.544	INTRON CAH2
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	1.332e^-4	0.544	DOWNSTREAM CG32333 INTRON CG32333
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	1.335e^-4	0.544	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	1.340e^-4	0.544	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	1.342e^-4	0.544	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	22115635	3R_22115635_SNP [dm3] 3R_26289913_SNP [dm6]	C	A	1.345e^-4	0.544	INTERGENIC
3L	3619293	3L_3619293_SNP [dm3] 3L_3619293_SNP [dm6]	T	C	1.355e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	6474322	3R_6474322_SNP [dm3] 3R_10648600_SNP [dm6]	A	T	1.359e^-4	0.544	INTERGENIC
2L	10779979	2L_10779979_SNP [dm3] 2L_10779979_SNP [dm6]	C	T	1.364e^-4	0.544	INTRON CG31869
3R	8646044	3R_8646044_SNP [dm3] 3R_12820322_SNP [dm6]	C	A	1.365e^-4	0.544	INTERGENIC
2R	9109752	2R_9109752_SNP [dm3] 2R_13222247_SNP [dm6]	C	T	1.370e^-4	0.544	UTR_5_PRIME Fsn UPSTREAM Dp INTRON Fsn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	5361485	3L_5361485_SNP [dm3] 3L_5368385_SNP [dm6]	A	C	1.374e^-4	0.544	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	1.377e^-4	0.544	EXON CR44942	TF binding site BDTNP1_TFBS_twi
2R	15120327	2R_15120327_SNP [dm3] 2R_19232822_SNP [dm6]	A	C	1.378e^-4	0.544	INTRON cora	TF binding site mE1_TFBS_HSA
2L	15765759	2L_15765759_SNP [dm3] 2L_15765759_SNP [dm6]	C	G	1.379e^-4	0.544	UTR_3_PRIME CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	11502121	3L_11502121_SNP [dm3] 3L_11509021_SNP [dm6]	G	T	1.381e^-4	0.544	UTR_3_PRIME Sgs8 UPSTREAM Sgs7 DOWNSTREAM CG33500
X	6315830	X_6315830_SNP [dm3] X_6421797_SNP [dm6]	A	C	1.385e^-4	0.544	INTERGENIC
2R	10755270	2R_10755270_SNP [dm3] 2R_14867765_SNP [dm6]	A	T	1.386e^-4	0.544	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11446469	2L_11446469_SNP [dm3] 2L_11446469_SNP [dm6]	G	C	1.387e^-4	0.544	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14694155	2L_14694155_SNP [dm3] 2L_14694155_SNP [dm6]	G	C	1.387e^-4	0.544	INTERGENIC
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	1.387e^-4	0.544	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11889507	2L_11889507_SNP [dm3] 2L_11889507_SNP [dm6]	G	T	1.390e^-4	0.544	INTRON Pde1c
2L	4976906	2L_4976906_SNP [dm3] 2L_4976906_SNP [dm6]	A	T	1.391e^-4	0.544	SYNONYMOUS_CODING Gmd UPSTREAM CG3792	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	8814630	X_8814630_SNP [dm3] X_8920597_SNP [dm6]	C	T	1.396e^-4	0.544	UPSTREAM CR44111 INTRON rdgA
3L	4080538	3L_4080538_SNP [dm3] 3L_4080538_SNP [dm6]	C	A	1.397e^-4	0.544	INTRON Gad1
3R	8981995	3R_8981995_SNP [dm3] 3R_13156273_SNP [dm6]	G	A	1.404e^-4	0.544	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7112197	3R_7112197_SNP [dm3] 3R_11286475_SNP [dm6]	G	A	1.406e^-4	0.544	INTRON CR31386
X	20885940	X_20885940_SNP [dm3] X_21014913_SNP [dm6]	G	C	1.410e^-4	0.544	INTERGENIC
3R	7729408	3R_7729408_SNP [dm3] 3R_11903686_SNP [dm6]	T	C	1.410e^-4	0.544	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2487811	3L_2487811_SNP [dm3] 3L_2487811_SNP [dm6]	T	G	1.412e^-4	0.544	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15737791	2L_15737791_SNP [dm3] 2L_15737791_SNP [dm6]	A	G	1.417e^-4	0.544	NON_SYNONYMOUS_CODING CycE	regulatory region FlyBase REDfly_CRMs
3R	7106806	3R_7106806_SNP [dm3] 3R_11281084_SNP [dm6]	C	A	1.422e^-4	0.544	INTRON CR31386
2L	4478083	2L_4478083_SNP [dm3] 2L_4478083_SNP [dm6]	T	C	1.425e^-4	0.544	UTR_3_PRIME dp
3R	8567206	3R_8567206_SNP [dm3] 3R_12741484_SNP [dm6]	A	T	1.430e^-4	0.544	DOWNSTREAM CG5999 & 1 other INTERGENIC
2L	14918440	2L_14918440_SNP [dm3] 2L_14918440_SNP [dm6]	C	T	1.430e^-4	0.544	INTRON CG42313
3L	19960383	3L_19960383_SNP [dm3] 3L_19967283_SNP [dm6]	G	A	1.431e^-4	0.544	INTRON Ac76E
3L	5853139	3L_5853139_SNP [dm3] 3L_5860039_SNP [dm6]	C	A	1.437e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	1.440e^-4	0.544	INTRON timeout & 2 others
3R	11424965	3R_11424965_SNP [dm3] 3R_15599243_SNP [dm6]	C	A	1.444e^-4	0.544	INTERGENIC
2L	12118234	2L_12118234_SNP [dm3] 2L_12118234_SNP [dm6]	T	C	1.444e^-4	0.544	INTRON CG17211
3R	7776359	3R_7776359_SNP [dm3] 3R_11950637_SNP [dm6]	A	C	1.445e^-4	0.544	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	1.446e^-4	0.544	UPSTREAM CG10635 & 1 other INTERGENIC
X	8465172	X_8465172_SNP [dm3] X_8571139_SNP [dm6]	C	T	1.449e^-4	0.544	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3L	752856	3L_752856_SNP [dm3] 3L_752856_SNP [dm6]	C	T	1.455e^-4	0.544	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11348234	3L_11348234_SNP [dm3] 3L_11355134_SNP [dm6]	T	C	1.458e^-4	0.544	INTERGENIC
3L	6596296	3L_6596296_SNP [dm3] 3L_6603196_SNP [dm6]	C	T	1.458e^-4	0.544	UTR_5_PRIME ndl UPSTREAM CG8368
2L	11426402	2L_11426402_SNP [dm3] 2L_11426402_SNP [dm6]	G	T	1.461e^-4	0.544	INTERGENIC
3R	13145347	3R_13145347_SNP [dm3] 3R_17319625_SNP [dm6]	A	G	1.462e^-4	0.544	DOWNSTREAM beat-IIa INTERGENIC
3R	2288867	3R_2288867_SNP [dm3] 3R_6463145_SNP [dm6]	T	C	1.464e^-4	0.544	INTERGENIC
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	1.465e^-4	0.544	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24698056	3R_24698056_SNP [dm3] 3R_28872334_SNP [dm6]	G	A	1.470e^-4	0.544	UPSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18132907	X_18132907_SNP [dm3] X_18238874_SNP [dm6]	A	G	1.485e^-4	0.544	INTERGENIC	silencer mE1_HDAC_PRE
3R	2774350	3R_2774350_SNP [dm3] 3R_6948628_SNP [dm6]	G	A	1.487e^-4	0.544	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13643867	2L_13643867_SNP [dm3] 2L_13643867_SNP [dm6]	G	A	1.489e^-4	0.544	DOWNSTREAM CR44726 INTERGENIC
3L	3619294	3L_3619294_SNP [dm3] 3L_3619294_SNP [dm6]	A	C	1.489e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	1.490e^-4	0.544	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	1.491e^-4	0.544	INTRON CR44941
3R	27765634	3R_27765634_SNP [dm3] 3R_31939912_SNP [dm6]	C	A	1.491e^-4	0.544	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12475285	3L_12475285_SNP [dm3] 3L_12482185_SNP [dm6]	C	G	1.493e^-4	0.544	UPSTREAM CG33725 INTRON CG10663
2L	11466408	2L_11466408_SNP [dm3] 2L_11466408_SNP [dm6]	A	T	1.494e^-4	0.544	INTERGENIC
X	18971673	X_18971673_SNP [dm3] X_19077640_SNP [dm6]	A	T	1.495e^-4	0.544	UPSTREAM CG7406 INTERGENIC
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	1.497e^-4	0.544	INTRON nAChRalpha3
2R	14222094	2R_14222094_SNP [dm3] 2R_18334589_SNP [dm6]	T	G	1.499e^-4	0.544	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24661147	3R_24661147_SNP [dm3] 3R_28835425_SNP [dm6]	G	T	1.500e^-4	0.544	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	1.503e^-4	0.544	INTRON Octbeta2R
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	1.504e^-4	0.544	INTRON timeout & 2 others
2R	19136166	2R_19136166_SNP [dm3] 2R_23248643_SNP [dm6]	C	T	1.507e^-4	0.544	UPSTREAM RpL22-like INTERGENIC
2L	15898838	2L_15898838_SNP [dm3] 2L_15898838_SNP [dm6]	A	G	1.510e^-4	0.544	DOWNSTREAM CG31823 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8479292	3R_8479292_SNP [dm3] 3R_12653570_SNP [dm6]	C	T	1.539e^-4	0.55	DOWNSTREAM Dtg INTERGENIC
2R	13600637	2R_13600637_SNP [dm3] 2R_17713132_SNP [dm6]	C	G	1.540e^-4	0.55	INTRON CG6424	TF binding site mE1_TFBS_sbb
X	2992297	X_2992297_INS [dm3] X_3098264_INS [dm6]	T	TAAT	1.540e^-4	0.55	INTRON kirre	regulatory region REDfly_CRMs
3R	7747933	3R_7747933_SNP [dm3] 3R_11922211_SNP [dm6]	A	G	1.542e^-4	0.55	INTRON Cad87A
2R	10070765	2R_10070765_DEL [dm3] 2R_14183260_DEL [dm6]	GG	G	1.543e^-4	0.55	DOWNSTREAM cg INTERGENIC
3L	966311	3L_966311_SNP [dm3] 3L_966311_SNP [dm6]	T	C	1.544e^-4	0.55	INTRON Glut1
3R	2811326	3R_2811326_SNP [dm3] 3R_6985604_SNP [dm6]	T	A	1.548e^-4	0.55	INTRON Antp
3R	20804324	3R_20804324_SNP [dm3] 3R_24978602_SNP [dm6]	G	C	1.553e^-4	0.55	INTERGENIC
2R	6078408	2R_6078408_SNP [dm3] 2R_10190903_SNP [dm6]	T	C	1.554e^-4	0.55	INTRON KCNQ
X	22138499	X_22138499_SNP [dm3] X_22736663_SNP [dm6]	C	A	1.558e^-4	0.55	INTRON CR44997
2R	11604008	2R_11604008_SNP [dm3] 2R_15716503_SNP [dm6]	C	G	1.568e^-4	0.55	INTERGENIC
3L	1595568	3L_1595568_SNP [dm3] 3L_1595568_SNP [dm6]	A	G	1.568e^-4	0.55	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13071744	3L_13071744_SNP [dm3] 3L_13078644_SNP [dm6]	T	C	1.569e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2140066	3L_2140066_SNP [dm3] 3L_2140066_SNP [dm6]	C	T	1.578e^-4	0.55	NON_SYNONYMOUS_CODING zormin INTRON zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3802410	3L_3802410_SNP [dm3] 3L_3802410_SNP [dm6]	G	T	1.581e^-4	0.55	INTRON CG32264
3R	8743846	3R_8743846_SNP [dm3] 3R_12918124_SNP [dm6]	T	A	1.589e^-4	0.55	INTRON beat-Vb
X	22136720	X_22136720_SNP [dm3] X_22734884_SNP [dm6]	T	A	1.590e^-4	0.55	INTRON CR44997
X	22136722	X_22136722_SNP [dm3] X_22734886_SNP [dm6]	T	C	1.590e^-4	0.55	INTRON CR44997
3R	7714007	3R_7714007_SNP [dm3] 3R_11888285_SNP [dm6]	G	C	1.592e^-4	0.55	INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6362321	3R_6362321_SNP [dm3] 3R_10536599_SNP [dm6]	T	C	1.595e^-4	0.55	INTRON hth	TF binding site BDTNP1_TFBS_dl
X	6315823	X_6315823_SNP [dm3] X_6421790_SNP [dm6]	C	T	1.595e^-4	0.55	INTERGENIC
3R	23185031	3R_23185031_INS [dm3] 3R_27359309_INS [dm6]	T	TGCACGCT	1.598e^-4	0.55	UPSTREAM CG42534 INTRON CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1049648	3R_1049648_SNP [dm3] 3R_5223926_SNP [dm6]	A	C	1.598e^-4	0.55	UPSTREAM CG14664 & 1 other INTERGENIC
X	15217735	X_15217735_SNP [dm3] X_15323702_SNP [dm6]	A	G	1.598e^-4	0.55	SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	1.608e^-4	0.552	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	1.616e^-4	0.553	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	1.617e^-4	0.553	INTRON Octbeta2R
3L	2621662	3L_2621662_SNP [dm3] 3L_2621662_SNP [dm6]	C	A	1.620e^-4	0.553	INTRON Pxn
2L	5926852	2L_5926852_SNP [dm3] 2L_5926852_SNP [dm6]	T	C	1.624e^-4	0.553	UPSTREAM CR43926 INTRON dsf
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	1.625e^-4	0.553	SYNONYMOUS_CODING msps
2R	10745563	2R_10745563_SNP [dm3] 2R_14858058_SNP [dm6]	T	C	1.628e^-4	0.553	SYNONYMOUS_CODING CG33506 DOWNSTREAM HPS1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	1.633e^-4	0.554	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	1.638e^-4	0.554	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7210988	2L_7210988_SNP [dm3] 2L_7210988_SNP [dm6]	A	G	1.638e^-4	0.554	INTRON CG13784
3R	20911376	3R_20911376_SNP [dm3] 3R_25085654_SNP [dm6]	G	T	1.643e^-4	0.554	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6448466	2R_6448466_SNP [dm3] 2R_10560961_SNP [dm6]	G	T	1.656e^-4	0.558	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19216172	2R_19216172_SNP [dm3] 2R_23328649_SNP [dm6]	T	A	1.664e^-4	0.558	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2481758	3L_2481758_SNP [dm3] 3L_2481758_SNP [dm6]	T	C	1.665e^-4	0.558	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.675e^-4	0.558	INTRON fru
2R	18951172	2R_18951172_SNP [dm3] 2R_23063649_SNP [dm6]	G	A	1.676e^-4	0.558	SYNONYMOUS_CODING CG9890	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5853130	3L_5853130_SNP [dm3] 3L_5860030_SNP [dm6]	A	G	1.676e^-4	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	420417	3L_420417_SNP [dm3] 3L_420417_SNP [dm6]	C	T	1.677e^-4	0.558	INTERGENIC
3L	9299769	3L_9299769_SNP [dm3] 3L_9306669_SNP [dm6]	C	A	1.678e^-4	0.558	INTERGENIC
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	1.681e^-4	0.558	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	1.688e^-4	0.559	INTRON sr
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	1.690e^-4	0.559	INTRON CG7367 & 1 other
3R	22115678	3R_22115678_SNP [dm3] 3R_26289956_SNP [dm6]	A	T	1.695e^-4	0.56	INTERGENIC
X	5113577	X_5113577_SNP [dm3] X_5219544_SNP [dm6]	A	G	1.704e^-4	0.561	INTRON CG15465 & 1 other
3L	9219958	3L_9219958_SNP [dm3] 3L_9226858_SNP [dm6]	A	G	1.704e^-4	0.561	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20610663	3R_20610663_SNP [dm3] 3R_24784941_SNP [dm6]	G	T	1.708e^-4	0.561	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
3L	3802349	3L_3802349_SNP [dm3] 3L_3802349_SNP [dm6]	G	A	1.712e^-4	0.561	INTRON CG32264
3R	7757160	3R_7757160_SNP [dm3] 3R_11931438_SNP [dm6]	A	G	1.715e^-4	0.561	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	7751014	3R_7751014_SNP [dm3] 3R_11925292_SNP [dm6]	T	A	1.728e^-4	0.565	INTRON Cad87A
2L	1281842	2L_1281842_SNP [dm3] 2L_1281842_SNP [dm6]	T	A	1.733e^-4	0.565	INTRON robo3
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	1.737e^-4	0.565	INTRON Octbeta3R
3R	19442328	3R_19442328_SNP [dm3] 3R_23616606_SNP [dm6]	G	A	1.738e^-4	0.565	INTRON CG31145
2R	4062538	2R_4062538_SNP [dm3] 2R_8175033_SNP [dm6]	C	G	1.741e^-4	0.565	INTRON LRP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	1.744e^-4	0.565	INTRON CG8910
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	1.746e^-4	0.565	INTERGENIC
2L	9665843	2L_9665843_SNP [dm3] 2L_9665843_SNP [dm6]	A	G	1.749e^-4	0.565	INTERGENIC
2R	14425225	2R_14425225_SNP [dm3] 2R_18537720_SNP [dm6]	T	A	1.752e^-4	0.565	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18821464	X_18821464_SNP [dm3] X_18927431_SNP [dm6]	T	G	1.759e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15554157	2L_15554157_SNP [dm3] 2L_15554157_SNP [dm6]	T	G	1.766e^-4	0.566	INTRON kek3
2L	13284458	2L_13284458_SNP [dm3] 2L_13284458_SNP [dm6]	T	G	1.783e^-4	0.566	UTR_3_PRIME Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085
3L	6363060	3L_6363060_SNP [dm3] 3L_6369960_SNP [dm6]	G	T	1.794e^-4	0.566	DOWNSTREAM CR45419 INTERGENIC
X	6112599	X_6112599_SNP [dm3] X_6218566_SNP [dm6]	G	C	1.796e^-4	0.566	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15531471	2L_15531471_INS [dm3] 2L_15531471_INS [dm6]	A	AAAA	1.806e^-4	0.566	INTERGENIC
X	15217828	X_15217828_SNP [dm3] X_15323795_SNP [dm6]	G	C	1.810e^-4	0.566	INTRON Top1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14115969	3L_14115969_SNP [dm3] 3L_14122869_SNP [dm6]	A	G	1.826e^-4	0.566	INTRON Sox21b
3L	14483182	3L_14483182_SNP [dm3] 3L_14490082_SNP [dm6]	T	C	1.835e^-4	0.566	INTRON bbg	TF binding site BDTNP1_TFBS_dl
2L	17092697	2L_17092697_SNP [dm3] 2L_17092697_SNP [dm6]	A	C	1.839e^-4	0.566	INTERGENIC
3L	8651707	3L_8651707_SNP [dm3] 3L_8658607_SNP [dm6]	C	G	1.839e^-4	0.566	INTERGENIC
3R	7757573	3R_7757573_SNP [dm3] 3R_11931851_SNP [dm6]	C	G	1.852e^-4	0.566	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	7774132	3R_7774132_SNP [dm3] 3R_11948410_SNP [dm6]	A	G	1.858e^-4	0.566	INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	7761421	3R_7761421_DEL [dm3] 3R_11935699_DEL [dm6]	AGCATTTT	A	1.865e^-4	0.566	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7210981	2L_7210981_SNP [dm3] 2L_7210981_SNP [dm6]	C	T	1.868e^-4	0.566	INTRON CG13784
3R	8542604	3R_8542604_SNP [dm3] 3R_12716882_SNP [dm6]	A	C	1.871e^-4	0.566	INTRON Men
2L	14693633	2L_14693633_SNP [dm3] 2L_14693633_SNP [dm6]	G	A	1.876e^-4	0.566	INTERGENIC
3L	4837874	3L_4837874_SNP [dm3] 3L_4837874_SNP [dm6]	C	A	1.877e^-4	0.566	UTR_3_PRIME CG13707
2L	14423141	2L_14423141_SNP [dm3] 2L_14423141_SNP [dm6]	T	C	1.881e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_cad
X	20689064	X_20689064_SNP [dm3] X_20818037_SNP [dm6]	A	G	1.882e^-4	0.566	INTRON shakB
2L	6943827	2L_6943827_SNP [dm3] 2L_6943827_SNP [dm6]	T	G	1.882e^-4	0.566	UTR_3_PRIME CG10158	TF binding site mE1_TFBS_cad
3R	12713153	3R_12713153_INS [dm3] 3R_16887431_INS [dm6]	A	AAA	1.882e^-4	0.566	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9222985	3L_9222985_SNP [dm3] 3L_9229885_SNP [dm6]	T	C	1.885e^-4	0.566	INTERGENIC
2R	17065643	2R_17065643_SNP [dm3] 2R_21178138_SNP [dm6]	T	G	1.886e^-4	0.566	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad
3R	7722247	3R_7722247_SNP [dm3] 3R_11896525_SNP [dm6]	C	T	1.889e^-4	0.566	SYNONYMOUS_CODING Cad87A
2L	17092721	2L_17092721_SNP [dm3] 2L_17092721_SNP [dm6]	A	T	1.889e^-4	0.566	INTERGENIC
2R	13184427	2R_13184427_SNP [dm3] 2R_17296922_SNP [dm6]	T	A	1.892e^-4	0.566	INTRON mbl
2R	3969963	2R_3969963_SNP [dm3] 2R_8082458_SNP [dm6]	G	A	1.897e^-4	0.566	UPSTREAM sut1 & 1 other INTRON slv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11426399	2L_11426399_DEL [dm3] 2L_11426399_DEL [dm6]	TT	T	1.897e^-4	0.566	INTERGENIC
3L	3613501	3L_3613501_SNP [dm3] 3L_3613501_SNP [dm6]	C	A	1.898e^-4	0.566	INTRON CG10359
X	7243316	X_7243316_SNP [dm3] X_7349283_SNP [dm6]	T	C	1.900e^-4	0.566	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	556764	2L_556764_SNP [dm3] 2L_556764_SNP [dm6]	C	T	1.900e^-4	0.566	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5237232	X_5237232_SNP [dm3] X_5343199_SNP [dm6]	A	G	1.901e^-4	0.566	INTRON SK
3R	12744085	3R_12744085_SNP [dm3] 3R_16918363_SNP [dm6]	T	A	1.904e^-4	0.566	INTRON iab-8	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	8765615	3R_8765615_SNP [dm3] 3R_12939893_SNP [dm6]	C	T	1.904e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	1.910e^-4	0.566	INTRON CG3726
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	1.918e^-4	0.566	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16362903	3L_16362903_SNP [dm3] 3L_16369803_SNP [dm6]	T	C	1.923e^-4	0.566	UPSTREAM CG18814 DOWNSTREAM CG4842 INTERGENIC
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	1.927e^-4	0.566	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11822643	2L_11822643_SNP [dm3] 2L_11822643_SNP [dm6]	C	T	1.931e^-4	0.566	INTRON Pde1c
3R	2175409	3R_2175409_SNP [dm3] 3R_6349687_SNP [dm6]	T	C	1.933e^-4	0.566	NON_SYNONYMOUS_CODING Hr83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	1.933e^-4	0.566	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
3L	9069091	3L_9069091_SNP [dm3] 3L_9075991_SNP [dm6]	C	A	1.934e^-4	0.566	INTRON Tequila	TF binding site mE1_TFBS_cad
2L	3120829	2L_3120829_SNP [dm3] 2L_3120829_SNP [dm6]	C	A	1.935e^-4	0.566	INTRON toc
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	1.936e^-4	0.566	INTRON timeout & 2 others
2R	9682406	2R_9682406_SNP [dm3] 2R_13794901_SNP [dm6]	G	T	1.942e^-4	0.566	START_GAINED Cpr50Cb UTR_5_PRIME Cpr50Cb
3R	19990741	3R_19990741_SNP [dm3] 3R_24165019_SNP [dm6]	C	A	1.943e^-4	0.566	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7745581	3R_7745581_SNP [dm3] 3R_11919859_SNP [dm6]	G	A	1.944e^-4	0.566	INTRON Cad87A
3L	5888680	3L_5888680_DEL [dm3] 3L_5895580_DEL [dm6]	AAGTTTATA	A	1.946e^-4	0.566	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3754671	3L_3754671_DEL [dm3] 3L_3754671_DEL [dm6]	TCAT	T	1.949e^-4	0.566	CODON_DELETION ppk27 INTRON CG32264
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	1.952e^-4	0.566	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
2R	16242316	2R_16242316_SNP [dm3] 2R_20354811_SNP [dm6]	C	A	1.954e^-4	0.566	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19967727	3L_19967727_SNP [dm3] 3L_19974627_SNP [dm6]	C	T	1.964e^-4	0.566	INTRON Ac76E
X	22136704	X_22136704_SNP [dm3] X_22734868_SNP [dm6]	G	A	1.969e^-4	0.566	INTRON CR44997
4	917103	4_917103_SNP [dm3] 4_896477_SNP [dm6]	A	G	1.973e^-4	0.566	INTRON unc-13
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	1.979e^-4	0.566	SYNONYMOUS_CODING Best2
2L	4976930	2L_4976930_SNP [dm3] 2L_4976930_SNP [dm6]	T	G	1.982e^-4	0.566	UTR_5_PRIME Gmd UPSTREAM CG3792	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	5060918	3L_5060918_SNP [dm3] 3L_5060918_SNP [dm6]	A	G	1.984e^-4	0.566	INTRON Con
2R	16381548	2R_16381548_SNP [dm3] 2R_20494043_SNP [dm6]	C	T	1.988e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16032341	X_16032341_SNP [dm3] X_16138308_SNP [dm6]	G	T	1.994e^-4	0.566	INTRON disco-r
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	1.998e^-4	0.566	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	1.998e^-4	0.566	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
X	5113639	X_5113639_SNP [dm3] X_5219606_SNP [dm6]	C	T	1.999e^-4	0.566	INTRON CG15465 & 1 other
3R	12719376	3R_12719376_SNP [dm3] 3R_16893654_SNP [dm6]	T	C	2.007e^-4	0.566	INTRON iab-8 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8604840	2L_8604840_SNP [dm3] 2L_8604840_SNP [dm6]	G	C	2.011e^-4	0.566	INTRON Sema-1a
3L	7990775	3L_7990775_SNP [dm3] 3L_7997675_SNP [dm6]	C	T	2.013e^-4	0.566	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	2.015e^-4	0.566	INTRON salm
3R	8793021	3R_8793021_SNP [dm3] 3R_12967299_SNP [dm6]	C	T	2.017e^-4	0.566	NON_SYNONYMOUS_CODING grsm UTR_5_PRIME CG14384 UPSTREAM CG14384 DOWNSTREAM CG7381
2L	4979430	2L_4979430_SNP [dm3] 2L_4979430_SNP [dm6]	G	A	2.018e^-4	0.566	UPSTREAM CG8891 DOWNSTREAM CG8892 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3872611	2R_3872611_SNP [dm3] 2R_7985106_SNP [dm6]	G	A	2.034e^-4	0.566	NON_SYNONYMOUS_CODING ACC
2L	11447279	2L_11447279_SNP [dm3] 2L_11447279_SNP [dm6]	C	T	2.041e^-4	0.566	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3802122	3L_3802122_SNP [dm3] 3L_3802122_SNP [dm6]	C	A	2.042e^-4	0.566	UPSTREAM CG32264 INTRON CG32264
3R	4142571	3R_4142571_SNP [dm3] 3R_8316849_SNP [dm6]	T	C	2.048e^-4	0.566	UPSTREAM CR45215 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	9438296	X_9438296_SNP [dm3] X_9544263_SNP [dm6]	G	C	2.052e^-4	0.566	INTRON CG32700	TF binding site BDTNP1_TFBS_dl
3R	2222041	3R_2222041_SNP [dm3] 3R_6396319_SNP [dm6]	T	A	2.058e^-4	0.566	INTRON Dmtn
3R	11424977	3R_11424977_SNP [dm3] 3R_15599255_SNP [dm6]	C	T	2.066e^-4	0.566	INTERGENIC
3L	14154788	3L_14154788_SNP [dm3] 3L_14161688_SNP [dm6]	G	C	2.069e^-4	0.566	INTERGENIC	regulatory region REDfly_CRMs
2L	912228	2L_912228_SNP [dm3] 2L_912228_SNP [dm6]	A	G	2.077e^-4	0.566	DOWNSTREAM CR44061 INTERGENIC
X	12765276	X_12765276_SNP [dm3] X_12871243_SNP [dm6]	T	C	2.084e^-4	0.566	INTRON Pde9	TF binding site mE1_TFBS_sbb
3R	7737474	3R_7737474_SNP [dm3] 3R_11911752_SNP [dm6]	C	T	2.086e^-4	0.566	INTRON Cad87A
2R	5018429	2R_5018429_SNP [dm3] 2R_9130924_SNP [dm6]	T	A	2.092e^-4	0.566	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	2.094e^-4	0.566	INTRON kar	TF binding site mE1_TFBS_cad
3L	9607091	3L_9607091_SNP [dm3] 3L_9613991_SNP [dm6]	C	A	2.094e^-4	0.566	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607107	3L_9607107_DEL [dm3] 3L_9614007_DEL [dm6]	TT	T	2.094e^-4	0.566	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	12362948	X_12362948_SNP [dm3] X_12468915_SNP [dm6]	C	T	2.095e^-4	0.566	INTRON CG42258	TF binding site mE1_TFBS_HSA
3R	13019301	3R_13019301_SNP [dm3] 3R_17193579_SNP [dm6]	G	C	2.096e^-4	0.566	INTRON Mur89F
2R	16381345	2R_16381345_SNP [dm3] 2R_20493840_SNP [dm6]	C	T	2.102e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1266464	X_1266464_SNP [dm3] X_1372431_SNP [dm6]	T	C	2.104e^-4	0.566	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7487492	3R_7487492_SNP [dm3] 3R_11661770_SNP [dm6]	A	G	2.110e^-4	0.566	INTRON CG42327
2L	15755247	2L_15755247_SNP [dm3] 2L_15755247_SNP [dm6]	T	C	2.111e^-4	0.566	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	2.114e^-4	0.566	UTR_3_PRIME CG9970 INTRON Shab
3L	12424979	3L_12424979_SNP [dm3] 3L_12431879_SNP [dm6]	A	C	2.117e^-4	0.566	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
4	1267821	4_1267821_SNP [dm3] 4_1264095_SNP [dm6]	A	T	2.123e^-4	0.566	INTRON Caps
3R	12651073	3R_12651073_SNP [dm3] 3R_16825351_SNP [dm6]	C	T	2.129e^-4	0.566	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14662062	2R_14662062_SNP [dm3] 2R_18774557_SNP [dm6]	G	A	2.133e^-4	0.566	UTR_3_PRIME Mctp UPSTREAM CR43964
3L	22842996	3L_22842996_SNP [dm3] 3L_22849896_SNP [dm6]	G	A	2.135e^-4	0.566	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14423112	2L_14423112_SNP [dm3] 2L_14423112_SNP [dm6]	G	A	2.135e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18191886	3L_18191886_SNP [dm3] 3L_18198786_SNP [dm6]	C	G	2.137e^-4	0.566	INTERGENIC
X	12765438	X_12765438_SNP [dm3] X_12871405_SNP [dm6]	T	G	2.138e^-4	0.566	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	2.140e^-4	0.566	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	1502363	3L_1502363_DEL [dm3] 3L_1502363_DEL [dm6]	AA	A	2.141e^-4	0.566	UPSTREAM Psa DOWNSTREAM cue INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	1266374	X_1266374_SNP [dm3] X_1372341_SNP [dm6]	G	C	2.143e^-4	0.566	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	2.146e^-4	0.566	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17152837	2L_17152837_SNP [dm3] 2L_17152837_SNP [dm6]	T	G	2.153e^-4	0.566	INTRON beat-IIIa & 1 other
2L	4570446	2L_4570446_SNP [dm3] 2L_4570446_SNP [dm6]	G	C	2.154e^-4	0.566	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2363296	3L_2363296_SNP [dm3] 3L_2363296_SNP [dm6]	A	G	2.155e^-4	0.566	DOWNSTREAM CG13801 INTERGENIC
2L	15738097	2L_15738097_SNP [dm3] 2L_15738097_SNP [dm6]	G	A	2.157e^-4	0.566	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7296681	2R_7296681_SNP [dm3] 2R_11409176_SNP [dm6]	C	T	2.162e^-4	0.566	SYNONYMOUS_CODING CG30026 DOWNSTREAM CG34054	TF binding site mE1_TFBS_inv
2L	4977667	2L_4977667_SNP [dm3] 2L_4977667_SNP [dm6]	T	G	2.168e^-4	0.566	NON_SYNONYMOUS_CODING CG3792 UPSTREAM Gmd DOWNSTREAM CG8891	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	2.168e^-4	0.566	INTRON CG44153
2L	14694101	2L_14694101_SNP [dm3] 2L_14694101_SNP [dm6]	T	A	2.169e^-4	0.566	INTERGENIC
2R	15120351	2R_15120351_SNP [dm3] 2R_19232846_SNP [dm6]	A	G	2.170e^-4	0.566	INTRON cora	TF binding site mE1_TFBS_HSA
3R	7112399	3R_7112399_SNP [dm3] 3R_11286677_SNP [dm6]	T	A	2.173e^-4	0.566	INTRON CR31386
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	2.176e^-4	0.566	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3R	15767315	3R_15767315_DEL [dm3] 3R_19941593_DEL [dm6]	AAG	A	2.179e^-4	0.566	INTRON Hs6st
2L	11819255	2L_11819255_SNP [dm3] 2L_11819255_SNP [dm6]	A	G	2.179e^-4	0.566	INTRON Pde1c
3R	13328042	3R_13328042_SNP [dm3] 3R_17502320_SNP [dm6]	T	G	2.190e^-4	0.566	INTRON Dscam3
2R	15174933	2R_15174933_SNP [dm3] 2R_19287428_SNP [dm6]	A	T	2.194e^-4	0.566	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	2.195e^-4	0.566	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	2.202e^-4	0.566	INTRON cu
3R	8702606	3R_8702606_SNP [dm3] 3R_12876884_SNP [dm6]	A	C	2.203e^-4	0.566	INTERGENIC
3R	8777175	3R_8777175_SNP [dm3] 3R_12951453_SNP [dm6]	G	A	2.204e^-4	0.566	INTRON grsm
2L	18332213	2L_18332213_SNP [dm3] 2L_18332213_SNP [dm6]	A	G	2.206e^-4	0.566	INTRON Fas3	TF binding site BDTNP1_TFBS_da
3R	27794273	3R_27794273_SNP [dm3] 3R_31968551_SNP [dm6]	G	C	2.207e^-4	0.566	INTRON heph
3R	8872581	3R_8872581_SNP [dm3] 3R_13046859_SNP [dm6]	G	T	2.209e^-4	0.566	SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	9607243	3L_9607243_SNP [dm3] 3L_9614143_SNP [dm6]	A	G	2.212e^-4	0.566	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9607256	3L_9607256_SNP [dm3] 3L_9614156_SNP [dm6]	G	T	2.212e^-4	0.566	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	12177252	3L_12177252_SNP [dm3] 3L_12184152_SNP [dm6]	G	A	2.214e^-4	0.566	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
2L	15383510	2L_15383510_SNP [dm3] 2L_15383510_SNP [dm6]	C	A	2.223e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3802464	3L_3802464_SNP [dm3] 3L_3802464_SNP [dm6]	A	C	2.224e^-4	0.566	INTRON CG32264
3R	21854541	3R_21854541_SNP [dm3] 3R_26028819_SNP [dm6]	T	A	2.225e^-4	0.566	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8204109	2R_8204109_SNP [dm3] 2R_12316604_SNP [dm6]	G	A	2.226e^-4	0.566	NON_SYNONYMOUS_CODING CG30046	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	2.228e^-4	0.566	SYNONYMOUS_CODING GluRIIE
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	2.228e^-4	0.566	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5628089	3L_5628089_SNP [dm3] 3L_5634989_SNP [dm6]	C	G	2.236e^-4	0.566	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5946299	3L_5946299_SNP [dm3] 3L_5953199_SNP [dm6]	G	C	2.238e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24661008	3R_24661008_SNP [dm3] 3R_28835286_SNP [dm6]	C	G	2.247e^-4	0.566	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7389596	3L_7389596_SNP [dm3] 3L_7396496_SNP [dm6]	C	G	2.249e^-4	0.566	NON_SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
3L	19444140	3L_19444140_SNP [dm3] 3L_19451040_SNP [dm6]	A	T	2.250e^-4	0.566	DOWNSTREAM Chd3 INTERGENIC
2L	15459131	2L_15459131_SNP [dm3] 2L_15459131_SNP [dm6]	A	G	2.250e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	2.251e^-4	0.566	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	2.251e^-4	0.566	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	2.251e^-4	0.566	INTERGENIC
X	18345931	X_18345931_DEL [dm3] X_18451898_DEL [dm6]	TCCATTT	T	2.253e^-4	0.566	INTRON CG32547
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	2.254e^-4	0.566	INTRON Octbeta3R
2L	15747165	2L_15747165_SNP [dm3] 2L_15747165_SNP [dm6]	T	C	2.258e^-4	0.566	UPSTREAM CycE & 1 other DOWNSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	21062870	X_21062870_SNP [dm3] X_21191843_SNP [dm6]	T	A	2.263e^-4	0.566	INTERGENIC
2R	19226299	2R_19226299_SNP [dm3] 2R_23338776_SNP [dm6]	G	A	2.266e^-4	0.566	INTERGENIC
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	2.267e^-4	0.566	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12153082	3R_12153082_SNP [dm3] 3R_16327360_SNP [dm6]	T	G	2.276e^-4	0.566	UPSTREAM CG17930 DOWNSTREAM CG17929 INTRON Sulf1
3L	9607068	3L_9607068_SNP [dm3] 3L_9613968_SNP [dm6]	T	C	2.280e^-4	0.566	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19326853	2L_19326853_SNP [dm3] 2L_19326853_SNP [dm6]	C	T	2.286e^-4	0.566	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	8446539	3R_8446539_SNP [dm3] 3R_12620817_SNP [dm6]	C	T	2.300e^-4	0.566	INTERGENIC
3R	9555411	3R_9555411_SNP [dm3] 3R_13729689_SNP [dm6]	G	T	2.304e^-4	0.566	INTRON CG34383	TF binding site mE1_TFBS_inv
2L	11447295	2L_11447295_INS [dm3] 2L_11447295_INS [dm6]	G	GG	2.305e^-4	0.566	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9365052	2L_9365052_SNP [dm3] 2L_9365052_SNP [dm6]	T	G	2.324e^-4	0.566	DOWNSTREAM CR43404 INTERGENIC
3R	24661007	3R_24661007_SNP [dm3] 3R_28835285_SNP [dm6]	T	G	2.327e^-4	0.566	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24660760	3R_24660760_SNP [dm3] 3R_28835038_SNP [dm6]	C	T	2.328e^-4	0.566	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11819269	2L_11819269_SNP [dm3] 2L_11819269_SNP [dm6]	T	C	2.328e^-4	0.566	INTRON Pde1c
3R	24688990	3R_24688990_SNP [dm3] 3R_28863268_SNP [dm6]	A	C	2.331e^-4	0.566	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_sens
2R	15120398	2R_15120398_SNP [dm3] 2R_19232893_SNP [dm6]	A	T	2.337e^-4	0.566	INTRON cora	TF binding site mE1_TFBS_HSA
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	2.338e^-4	0.566	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7696878	2L_7696878_SNP [dm3] 2L_7696878_SNP [dm6]	T	A	2.341e^-4	0.566	INTRON Tep2
3L	12425000	3L_12425000_SNP [dm3] 3L_12431900_SNP [dm6]	A	G	2.344e^-4	0.566	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21583693	3R_21583693_SNP [dm3] 3R_25757971_SNP [dm6]	A	C	2.355e^-4	0.566	INTRON LpR1
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	2.355e^-4	0.566	UTR_3_PRIME CG34351
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	2.357e^-4	0.566	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	2.357e^-4	0.566	INTRON timeout & 2 others
X	8727891	X_8727891_SNP [dm3] X_8833858_SNP [dm6]	A	C	2.360e^-4	0.566	INTERGENIC
2R	11609424	2R_11609424_DEL [dm3] 2R_15721919_DEL [dm6]	CC	C	2.365e^-4	0.566	INTERGENIC
3L	1592766	3L_1592766_SNP [dm3] 3L_1592766_SNP [dm6]	T	C	2.366e^-4	0.566	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	2.367e^-4	0.566	INTRON fas
3R	8468177	3R_8468177_SNP [dm3] 3R_12642455_SNP [dm6]	G	T	2.368e^-4	0.566	UTR_5_PRIME CG6753	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8862316	X_8862316_SNP [dm3] X_8968283_SNP [dm6]	C	G	2.371e^-4	0.566	INTRON rdgA
3R	15769337	3R_15769337_SNP [dm3] 3R_19943615_SNP [dm6]	A	C	2.375e^-4	0.566	INTRON Hs6st
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.375e^-4	0.566	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	2.377e^-4	0.566	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11192863	2L_11192863_DEL [dm3] 2L_11192863_DEL [dm6]	TTCAACT	T	2.379e^-4	0.566	INTRON Ca-beta
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	2.380e^-4	0.566	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19990357	3R_19990357_SNP [dm3] 3R_24164635_SNP [dm6]	A	T	2.383e^-4	0.566	SYNONYMOUS_CODING Apc2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	1598754	3L_1598754_SNP [dm3] 3L_1598754_SNP [dm6]	C	T	2.384e^-4	0.566	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_chinmo
2L	2936819	2L_2936819_SNP [dm3] 2L_2936819_SNP [dm6]	C	T	2.387e^-4	0.566	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	12713309	3R_12713309_INS [dm3] 3R_16887587_INS [dm6]	T	TTTTT	2.389e^-4	0.566	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2238707	X_2238707_SNP [dm3] X_2344674_SNP [dm6]	A	T	2.394e^-4	0.566	UPSTREAM mRpL14 DOWNSTREAM phl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13618618	3R_13618618_SNP [dm3] 3R_17792896_SNP [dm6]	C	A	2.395e^-4	0.566	INTRON CG43102
X	9776683	X_9776683_SNP [dm3] X_9882650_SNP [dm6]	C	A	2.398e^-4	0.566	UTR_3_PRIME CG9689 DOWNSTREAM CG9689
2R	5025267	2R_5025267_SNP [dm3] 2R_9137762_SNP [dm6]	G	A	2.403e^-4	0.566	START_GAINED alc UTR_5_PRIME alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8197567	2R_8197567_SNP [dm3] 2R_12310062_SNP [dm6]	G	C	2.403e^-4	0.566	SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
2R	15061184	2R_15061184_SNP [dm3] 2R_19173679_SNP [dm6]	G	T	2.403e^-4	0.566	INTRON CG10737
3L	14205927	3L_14205927_SNP [dm3] 3L_14212827_SNP [dm6]	A	T	2.403e^-4	0.566	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	14435714	2L_14435714_INS [dm3] 2L_14435714_INS [dm6]	G	GT	2.404e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8701601	3R_8701601_SNP [dm3] 3R_12875879_SNP [dm6]	G	A	2.411e^-4	0.566	INTERGENIC
2L	5169838	2L_5169838_SNP [dm3] 2L_5169838_SNP [dm6]	C	T	2.414e^-4	0.566	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	5877899	3L_5877899_SNP [dm3] 3L_5884799_SNP [dm6]	C	T	2.416e^-4	0.566	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14694050	2L_14694050_SNP [dm3] 2L_14694050_SNP [dm6]	C	T	2.417e^-4	0.566	INTERGENIC
2L	4570471	2L_4570471_SNP [dm3] 2L_4570471_SNP [dm6]	T	C	2.423e^-4	0.566	SPLICE_SITE_REGION dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15774756	3L_15774756_SNP [dm3] 3L_15781656_SNP [dm6]	G	A	2.426e^-4	0.566	INTERGENIC
2R	14871654	2R_14871654_SNP [dm3] 2R_18984149_SNP [dm6]	A	G	2.427e^-4	0.566	INTERGENIC
3R	8864676	3R_8864676_SNP [dm3] 3R_13038954_SNP [dm6]	A	G	2.428e^-4	0.566	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
X	7687675	X_7687675_SNP [dm3] X_7793642_SNP [dm6]	C	A	2.435e^-4	0.566	INTERGENIC
2L	9960003	2L_9960003_SNP [dm3] 2L_9960003_SNP [dm6]	T	A	2.436e^-4	0.566	UTR_3_PRIME CG5850 & 1 other DOWNSTREAM CG4658 & 1 other EXON CR44872
2L	15737793	2L_15737793_SNP [dm3] 2L_15737793_SNP [dm6]	C	T	2.439e^-4	0.566	SYNONYMOUS_CODING CycE	regulatory region FlyBase REDfly_CRMs
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	2.445e^-4	0.566	INTRON Cad87A	TF binding site mE1_TFBS_HSA
3L	5361486	3L_5361486_SNP [dm3] 3L_5368386_SNP [dm6]	A	C	2.448e^-4	0.566	UPSTREAM CG10635 & 1 other INTERGENIC
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	2.456e^-4	0.566	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	8824407	2L_8824407_SNP [dm3] 2L_8824407_SNP [dm6]	C	A	2.457e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	3339613	X_3339613_INS [dm3] X_3445580_INS [dm6]	T	TTTTT	2.460e^-4	0.566	UPSTREAM CG12535 INTRON CR44999 & 1 other
2R	3896623	2R_3896623_SNP [dm3] 2R_8009118_SNP [dm6]	T	C	2.461e^-4	0.566	DOWNSTREAM CG14762 & 1 other INTERGENIC
3R	7743523	3R_7743523_SNP [dm3] 3R_11917801_SNP [dm6]	G	A	2.464e^-4	0.566	INTRON Cad87A
2R	11982091	2R_11982091_SNP [dm3] 2R_16094586_SNP [dm6]	C	G	2.467e^-4	0.566	INTRON Dg	TF binding site BDTNP1_TFBS_twi
3R	7853617	3R_7853617_SNP [dm3] 3R_12027895_SNP [dm6]	G	A	2.471e^-4	0.566	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
2R	19669974	2R_19669974_SNP [dm3] 2R_23782451_SNP [dm6]	C	T	2.473e^-4	0.566	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3L	1847616	3L_1847616_SNP [dm3] 3L_1847616_SNP [dm6]	A	G	2.475e^-4	0.566	INTERGENIC
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	2.476e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2607510	X_2607510_SNP [dm3] X_2713477_SNP [dm6]	G	T	2.486e^-4	0.566	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2487809	3L_2487809_SNP [dm3] 3L_2487809_SNP [dm6]	A	T	2.489e^-4	0.566	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8394727	3R_8394727_SNP [dm3] 3R_12569005_SNP [dm6]	C	T	2.494e^-4	0.566	INTRON Octbeta2R
X	14299301	X_14299301_INS [dm3] X_14405268_INS [dm6]	A	AGAA	2.494e^-4	0.566	INTRON dpr8
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	2.496e^-4	0.566	INTERGENIC
2R	20265980	2R_20265980_SNP [dm3] 2R_24378457_SNP [dm6]	G	A	2.498e^-4	0.566	SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
2L	16229370	2L_16229370_SNP [dm3] 2L_16229370_SNP [dm6]	G	C	2.502e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8265539	3R_8265539_SNP [dm3] 3R_12439817_SNP [dm6]	G	T	2.503e^-4	0.566	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	8207077	2R_8207077_SNP [dm3] 2R_12319572_SNP [dm6]	G	A	2.503e^-4	0.566	INTERGENIC
3R	8361127	3R_8361127_SNP [dm3] 3R_12535405_SNP [dm6]	A	G	2.506e^-4	0.566	INTRON Octbeta3R
2L	6017940	2L_6017940_SNP [dm3] 2L_6017940_SNP [dm6]	T	A	2.508e^-4	0.566	INTRON H2.0
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	2.512e^-4	0.566	UTR_3_PRIME plum
3L	14512868	3L_14512868_SNP [dm3] 3L_14519768_SNP [dm6]	A	G	2.514e^-4	0.566	UTR_3_PRIME CG4613 DOWNSTREAM CG4613 INTRON bbg
3L	1683355	3L_1683355_SNP [dm3] 3L_1683355_SNP [dm6]	C	T	2.515e^-4	0.566	INTRON CG7991
3R	5305210	3R_5305210_SNP [dm3] 3R_9479488_SNP [dm6]	A	G	2.518e^-4	0.566	INTRON CG16779
2L	15755244	2L_15755244_SNP [dm3] 2L_15755244_SNP [dm6]	A	G	2.518e^-4	0.566	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	2.519e^-4	0.566	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12747590	3R_12747590_SNP [dm3] 3R_16921868_SNP [dm6]	A	T	2.519e^-4	0.566	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	2.519e^-4	0.566	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	17020895	3L_17020895_SNP [dm3] 3L_17027795_SNP [dm6]	T	C	2.522e^-4	0.566	DOWNSTREAM Fit2 INTRON CG7730
3L	15196310	3L_15196310_SNP [dm3] 3L_15203210_SNP [dm6]	G	A	2.523e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run
3L	3308489	3L_3308489_SNP [dm3] 3L_3308489_SNP [dm6]	C	T	2.523e^-4	0.566	INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8565677	3R_8565677_SNP [dm3] 3R_12739955_SNP [dm6]	C	T	2.530e^-4	0.566	SYNONYMOUS_CODING CG5724
X	6112830	X_6112830_SNP [dm3] X_6218797_SNP [dm6]	C	T	2.530e^-4	0.566	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15809626	3R_15809626_SNP [dm3] 3R_19983904_SNP [dm6]	A	G	2.531e^-4	0.566	INTRON Hs6st
X	12723987	X_12723987_SNP [dm3] X_12829954_SNP [dm6]	G	A	2.532e^-4	0.566	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	2.536e^-4	0.566	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3125700	2L_3125700_SNP [dm3] 2L_3125700_SNP [dm6]	C	T	2.538e^-4	0.566	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	2.538e^-4	0.566	INTRON fru
2L	14694033	2L_14694033_SNP [dm3] 2L_14694033_SNP [dm6]	G	C	2.542e^-4	0.566	INTERGENIC
2R	16966225	2R_16966225_SNP [dm3] 2R_21078720_SNP [dm6]	A	C	2.543e^-4	0.566	INTRON Treh
3L	14512968	3L_14512968_SNP [dm3] 3L_14519868_SNP [dm6]	A	G	2.545e^-4	0.566	SYNONYMOUS_CODING CG4613 INTRON bbg
3L	15774768	3L_15774768_INS [dm3] 3L_15781668_INS [dm6]	C	CCG	2.545e^-4	0.566	INTERGENIC
3L	14530532	3L_14530532_SNP [dm3] 3L_14537432_SNP [dm6]	G	A	2.553e^-4	0.566	UPSTREAM Mpcp DOWNSTREAM CG43246 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	18971679	X_18971679_SNP [dm3] X_19077646_SNP [dm6]	T	A	2.555e^-4	0.566	UPSTREAM CG7406 INTERGENIC
3R	11724703	3R_11724703_SNP [dm3] 3R_15898981_SNP [dm6]	T	G	2.558e^-4	0.566	INTRON glob1
3L	5610219	3L_5610219_SNP [dm3] 3L_5617119_SNP [dm6]	T	C	2.559e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17577684	3R_17577684_SNP [dm3] 3R_21751962_SNP [dm6]	C	G	2.562e^-4	0.566	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7714489	3R_7714489_SNP [dm3] 3R_11888767_SNP [dm6]	G	C	2.566e^-4	0.566	NON_SYNONYMOUS_CODING CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12555196	2L_12555196_SNP [dm3] 2L_12555196_SNP [dm6]	A	G	2.568e^-4	0.566	INTERGENIC
2R	11982058	2R_11982058_SNP [dm3] 2R_16094553_SNP [dm6]	T	A	2.570e^-4	0.566	INTRON Dg	TF binding site BDTNP1_TFBS_twi
2L	12249238	2L_12249238_SNP [dm3] 2L_12249238_SNP [dm6]	T	C	2.573e^-4	0.566	INTRON aret
X	20689065	X_20689065_SNP [dm3] X_20818038_SNP [dm6]	C	A	2.575e^-4	0.566	INTRON shakB
2L	14431755	2L_14431755_SNP [dm3] 2L_14431755_SNP [dm6]	G	A	2.576e^-4	0.566	UPSTREAM CR44732 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27054740	3R_27054740_SNP [dm3] 3R_31229018_SNP [dm6]	G	T	2.583e^-4	0.566	NON_SYNONYMOUS_CODING CG12054 DOWNSTREAM CG12054
3R	5438822	3R_5438822_SNP [dm3] 3R_9613100_SNP [dm6]	A	T	2.586e^-4	0.566	INTRON CG8312
2R	6078475	2R_6078475_SNP [dm3] 2R_10190970_SNP [dm6]	C	A	2.594e^-4	0.566	INTRON KCNQ
2L	2620859	2L_2620859_SNP [dm3] 2L_2620859_SNP [dm6]	C	G	2.598e^-4	0.566	DOWNSTREAM CG43403 INTERGENIC
X	6880226	X_6880226_SNP [dm3] X_6986193_SNP [dm6]	C	A	2.599e^-4	0.566	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	2.599e^-4	0.566	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	9670164	2L_9670164_SNP [dm3] 2L_9670164_SNP [dm6]	C	A	2.600e^-4	0.566	EXON CR44150
2L	11472116	2L_11472116_SNP [dm3] 2L_11472116_SNP [dm6]	A	G	2.601e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11041870	2R_11041870_SNP [dm3] 2R_15154365_SNP [dm6]	C	T	2.605e^-4	0.566	INTERGENIC
2R	17065649	2R_17065649_SNP [dm3] 2R_21178144_SNP [dm6]	A	G	2.606e^-4	0.566	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	2.610e^-4	0.566	INTRON salm
3R	7133756	3R_7133756_SNP [dm3] 3R_11308034_SNP [dm6]	G	T	2.612e^-4	0.566	INTERGENIC
2R	3809371	2R_3809371_SNP [dm3] 2R_7921866_SNP [dm6]	G	A	2.619e^-4	0.566	SYNONYMOUS_CODING Or43b DOWNSTREAM Cul1 & 1 other	TF binding site mE1_TFBS_cad
3L	9337605	3L_9337605_SNP [dm3] 3L_9344505_SNP [dm6]	A	C	2.623e^-4	0.566	NON_SYNONYMOUS_CODING PGRP-LC INTRON PGRP-LC
3L	12523849	3L_12523849_SNP [dm3] 3L_12530749_SNP [dm6]	T	C	2.628e^-4	0.566	SYNONYMOUS_STOP Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	2.629e^-4	0.566	INTERGENIC
2L	12606344	2L_12606344_SNP [dm3] 2L_12606344_SNP [dm6]	G	A	2.636e^-4	0.566	INTRON nub	TF binding site BDTNP1_TFBS_da
X	22136732	X_22136732_SNP [dm3] X_22734896_SNP [dm6]	A	G	2.638e^-4	0.566	INTRON CR44997
X	8732881	X_8732881_INS [dm3] X_8838848_INS [dm6]	A	ATGGA	2.645e^-4	0.566	INTRON CG12075
3R	7737420	3R_7737420_SNP [dm3] 3R_11911698_SNP [dm6]	G	A	2.646e^-4	0.566	INTRON Cad87A
2L	5169580	2L_5169580_SNP [dm3] 2L_5169580_SNP [dm6]	C	A	2.650e^-4	0.566	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	16330545	3L_16330545_SNP [dm3] 3L_16337445_SNP [dm6]	A	C	2.656e^-4	0.566	INTERGENIC
2L	14773789	2L_14773789_SNP [dm3] 2L_14773789_SNP [dm6]	A	G	2.660e^-4	0.566	DOWNSTREAM CG4650 INTERGENIC
3L	2365414	3L_2365414_SNP [dm3] 3L_2365414_SNP [dm6]	T	C	2.663e^-4	0.566	INTERGENIC
3L	9883879	3L_9883879_SNP [dm3] 3L_9890779_SNP [dm6]	A	C	2.665e^-4	0.566	INTRON CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2611942	2L_2611942_SNP [dm3] 2L_2611942_SNP [dm6]	A	T	2.666e^-4	0.566	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11724878	3R_11724878_DEL [dm3] 3R_15899156_DEL [dm6]	GTCAAGC	G	2.671e^-4	0.566	INTRON glob1
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	2.672e^-4	0.566	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	2.677e^-4	0.566	SYNONYMOUS_CODING GluRIIE
3R	22704366	3R_22704366_SNP [dm3] 3R_26878644_SNP [dm6]	G	A	2.679e^-4	0.566	INTRON CG5500 & 1 other
3R	14406245	3R_14406245_SNP [dm3] 3R_18580523_SNP [dm6]	C	T	2.679e^-4	0.566	INTRON fray & 1 other
2L	11362270	2L_11362270_DEL [dm3] 2L_11362270_DEL [dm6]	TCCT	T	2.684e^-4	0.566	INTRON salr	regulatory region REDfly_CRMs
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	2.684e^-4	0.566	INTRON Octbeta3R
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	2.687e^-4	0.566	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3567445	2L_3567445_SNP [dm3] 2L_3567445_SNP [dm6]	A	T	2.693e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20049450	2R_20049450_SNP [dm3] 2R_24161927_SNP [dm6]	G	A	2.695e^-4	0.566	UPSTREAM CG3328 DOWNSTREAM spag INTERGENIC
3R	21855922	3R_21855922_SNP [dm3] 3R_26030200_SNP [dm6]	T	C	2.696e^-4	0.566	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20610723	3R_20610723_SNP [dm3] 3R_24785001_SNP [dm6]	C	A	2.699e^-4	0.566	UTR_3_PRIME CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad
3R	5736783	3R_5736783_SNP [dm3] 3R_9911061_SNP [dm6]	C	T	2.702e^-4	0.566	INTRON Glut4EF
3R	19588225	3R_19588225_SNP [dm3] 3R_23762503_SNP [dm6]	G	A	2.703e^-4	0.566	INTRON CG10217	TF binding site mE1_TFBS_sens
2L	11193068	2L_11193068_SNP [dm3] 2L_11193068_SNP [dm6]	T	C	2.703e^-4	0.566	INTRON Ca-beta
3R	6571838	3R_6571838_SNP [dm3] 3R_10746116_SNP [dm6]	A	G	2.706e^-4	0.566	INTRON TkR86C
3L	10761459	3L_10761459_SNP [dm3] 3L_10768359_SNP [dm6]	G	A	2.706e^-4	0.566	INTERGENIC
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	2.712e^-4	0.566	INTRON salm
3R	8460035	3R_8460035_SNP [dm3] 3R_12634313_SNP [dm6]	G	A	2.714e^-4	0.566	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
3R	8429493	3R_8429493_SNP [dm3] 3R_12603771_SNP [dm6]	C	G	2.714e^-4	0.566	INTERGENIC
X	8552596	X_8552596_SNP [dm3] X_8658563_SNP [dm6]	A	G	2.719e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2237888	X_2237888_SNP [dm3] X_2343855_SNP [dm6]	A	G	2.721e^-4	0.566	UTR_3_PRIME phl DOWNSTREAM mRpL14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8859795	3L_8859795_SNP [dm3] 3L_8866695_SNP [dm6]	A	G	2.723e^-4	0.566	INTRON dally
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	2.728e^-4	0.566	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11010472	2L_11010472_SNP [dm3] 2L_11010472_SNP [dm6]	C	T	2.731e^-4	0.566	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	11012219	2L_11012219_SNP [dm3] 2L_11012219_SNP [dm6]	T	C	2.731e^-4	0.566	DOWNSTREAM dUTPase & 1 other INTERGENIC
2R	18571285	2R_18571285_SNP [dm3] 2R_22683780_SNP [dm6]	C	G	2.733e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	17092285	2L_17092285_SNP [dm3] 2L_17092285_SNP [dm6]	T	A	2.737e^-4	0.566	INTERGENIC
2L	17138429	2L_17138429_SNP [dm3] 2L_17138429_SNP [dm6]	T	C	2.737e^-4	0.566	INTRON beat-IIIa & 1 other
3R	8327259	3R_8327259_SNP [dm3] 3R_12501537_SNP [dm6]	A	C	2.739e^-4	0.566	UPSTREAM Hsp70Bbb INTERGENIC	transposable element FlyBase
3R	4151720	3R_4151720_SNP [dm3] 3R_8325998_SNP [dm6]	A	C	2.741e^-4	0.566	DOWNSTREAM CG7443 INTRON Poxm
3L	13071566	3L_13071566_INS [dm3] 3L_13078466_INS [dm6]	T	TT	2.741e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	2.744e^-4	0.566	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5874921	3L_5874921_SNP [dm3] 3L_5881821_SNP [dm6]	C	A	2.745e^-4	0.566	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21883270	3R_21883270_SNP [dm3] 3R_26057548_SNP [dm6]	C	T	2.749e^-4	0.566	SYNONYMOUS_CODING CG14550 UTR_3_PRIME CG42498 DOWNSTREAM CG14543 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2694366	2L_2694366_SNP [dm3] 2L_2694366_SNP [dm6]	A	T	2.753e^-4	0.566	DOWNSTREAM CG15398 INTRON CG31690
2L	10867174	2L_10867174_SNP [dm3] 2L_10867174_SNP [dm6]	C	T	2.754e^-4	0.566	INTERGENIC
3R	18934163	3R_18934163_SNP [dm3] 3R_23108441_SNP [dm6]	T	C	2.755e^-4	0.566	INTRON CG13830
3R	27140341	3R_27140341_SNP [dm3] 3R_31314619_SNP [dm6]	T	G	2.760e^-4	0.566	INTRON CG34347	TF binding site mE1_TFBS_chinmo
2L	2142170	2L_2142170_SNP [dm3] 2L_2142170_SNP [dm6]	T	G	2.762e^-4	0.566	INTRON tho2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8707693	3R_8707693_SNP [dm3] 3R_12881971_SNP [dm6]	A	C	2.763e^-4	0.566	INTERGENIC
2R	9999894	2R_9999894_SNP [dm3] 2R_14112389_SNP [dm6]	C	A	2.763e^-4	0.566	INTRON Prosap
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	2.766e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19204407	3R_19204407_SNP [dm3] 3R_23378685_SNP [dm6]	C	T	2.767e^-4	0.566	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
2L	12147275	2L_12147275_SNP [dm3] 2L_12147275_SNP [dm6]	A	G	2.771e^-4	0.566	INTRON CG31760
3L	14115931	3L_14115931_SNP [dm3] 3L_14122831_SNP [dm6]	A	C	2.772e^-4	0.566	INTRON Sox21b
3L	1121475	3L_1121475_SNP [dm3] 3L_1121475_SNP [dm6]	A	C	2.776e^-4	0.566	INTERGENIC
3R	8707874	3R_8707874_SNP [dm3] 3R_12882152_SNP [dm6]	T	C	2.783e^-4	0.566	INTERGENIC
2L	10867112	2L_10867112_SNP [dm3] 2L_10867112_SNP [dm6]	T	G	2.785e^-4	0.566	INTERGENIC
2L	13679256	2L_13679256_SNP [dm3] 2L_13679256_SNP [dm6]	G	C	2.786e^-4	0.566	INTRON CG31814
3L	5953996	3L_5953996_SNP [dm3] 3L_5960896_SNP [dm6]	G	A	2.788e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	2.790e^-4	0.566	INTRON timeout & 2 others
3R	8701872	3R_8701872_SNP [dm3] 3R_12876150_SNP [dm6]	T	C	2.791e^-4	0.566	INTERGENIC
3R	4928931	3R_4928931_SNP [dm3] 3R_9103209_SNP [dm6]	G	A	2.796e^-4	0.566	INTRON pum
3L	3638870	3L_3638870_DEL [dm3] 3L_3638870_DEL [dm6]	TC	T	2.801e^-4	0.566	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	2238073	X_2238073_SNP [dm3] X_2344040_SNP [dm6]	C	T	2.802e^-4	0.566	UTR_3_PRIME mRpL14 DOWNSTREAM phl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16330549	3L_16330549_SNP [dm3] 3L_16337449_SNP [dm6]	A	T	2.803e^-4	0.566	INTERGENIC
3L	8974269	3L_8974269_SNP [dm3] 3L_8981169_SNP [dm6]	G	A	2.810e^-4	0.566	UPSTREAM CG13314 INTERGENIC
2L	11450545	2L_11450545_SNP [dm3] 2L_11450545_SNP [dm6]	T	A	2.810e^-4	0.566	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12327922	2R_12327922_SNP [dm3] 2R_16440417_SNP [dm6]	G	T	2.811e^-4	0.566	INTERGENIC
X	18475920	X_18475920_SNP [dm3] X_18581887_SNP [dm6]	C	G	2.813e^-4	0.566	INTERGENIC
3R	2309445	3R_2309445_SNP [dm3] 3R_6483723_SNP [dm6]	T	C	2.816e^-4	0.566	INTRON CG15186
X	9666898	X_9666898_SNP [dm3] X_9772865_SNP [dm6]	C	T	2.826e^-4	0.566	INTERGENIC
2R	17065650	2R_17065650_SNP [dm3] 2R_21178145_SNP [dm6]	G	T	2.830e^-4	0.566	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19265065	2R_19265065_SNP [dm3] 2R_23377542_SNP [dm6]	T	C	2.830e^-4	0.566	UPSTREAM Golgin245 DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5946368	3L_5946368_SNP [dm3] 3L_5953268_SNP [dm6]	C	G	2.833e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9961266	3R_9961266_SNP [dm3] 3R_14135544_SNP [dm6]	T	C	2.834e^-4	0.566	INTERGENIC
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	2.835e^-4	0.566	INTRON CG32432
X	12013152	X_12013152_SNP [dm3] X_12119119_SNP [dm6]	A	G	2.836e^-4	0.566	INTRON Ten-a
3L	1993778	3L_1993778_DEL [dm3] 3L_1993778_DEL [dm6]	CCC	C	2.842e^-4	0.566	INTERGENIC
3R	24681140	3R_24681140_SNP [dm3] 3R_28855418_SNP [dm6]	T	A	2.844e^-4	0.566	INTRON spg & 1 other
2R	6078414	2R_6078414_SNP [dm3] 2R_10190909_SNP [dm6]	G	A	2.846e^-4	0.566	INTRON KCNQ
3R	2767591	3R_2767591_DEL [dm3] 3R_6941869_DEL [dm6]	CC	C	2.849e^-4	0.566	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9869577	3L_9869577_SNP [dm3] 3L_9876477_SNP [dm6]	G	A	2.851e^-4	0.566	DOWNSTREAM CR45406 INTERGENIC
3L	16330645	3L_16330645_SNP [dm3] 3L_16337545_SNP [dm6]	T	C	2.853e^-4	0.566	INTERGENIC
2L	4979418	2L_4979418_SNP [dm3] 2L_4979418_SNP [dm6]	A	G	2.855e^-4	0.566	UPSTREAM CG8891 DOWNSTREAM CG8892 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13236936	X_13236936_SNP [dm3] X_13342903_SNP [dm6]	G	A	2.856e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18971619	X_18971619_SNP [dm3] X_19077586_SNP [dm6]	G	A	2.861e^-4	0.566	UPSTREAM CG7406 INTERGENIC
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	2.864e^-4	0.566	INTRON Cad87A
2L	19076506	2L_19076506_SNP [dm3] 2L_19076506_SNP [dm6]	A	T	2.866e^-4	0.566	DOWNSTREAM CG10700 INTERGENIC	transposable element FlyBase
3L	5874886	3L_5874886_DEL [dm3] 3L_5881786_DEL [dm6]	AGATGA	A	2.868e^-4	0.566	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5874896	3L_5874896_SNP [dm3] 3L_5881796_SNP [dm6]	A	T	2.868e^-4	0.566	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14363288	3L_14363288_SNP [dm3] 3L_14370188_SNP [dm6]	C	A	2.869e^-4	0.566	UPSTREAM CG13481 INTERGENIC
X	9830180	X_9830180_SNP [dm3] X_9936147_SNP [dm6]	G	A	2.871e^-4	0.566	INTERGENIC
2L	11365771	2L_11365771_SNP [dm3] 2L_11365771_SNP [dm6]	G	T	2.874e^-4	0.566	INTRON salr
3R	6362388	3R_6362388_SNP [dm3] 3R_10536666_SNP [dm6]	T	A	2.877e^-4	0.566	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	7426127	3L_7426127_SNP [dm3] 3L_7433027_SNP [dm6]	C	T	2.878e^-4	0.566	DOWNSTREAM Rac2 INTRON CG42458
2L	18381170	2L_18381170_SNP [dm3] 2L_18381170_SNP [dm6]	T	C	2.880e^-4	0.566	INTRON Fas3
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	2.892e^-4	0.566	INTRON timeout & 2 others
3L	3562897	3L_3562897_DEL [dm3] 3L_3562897_DEL [dm6]	TG	T	2.895e^-4	0.566	INTRON Eip63E
X	4087652	X_4087652_DEL [dm3] X_4193619_DEL [dm6]	AA	A	2.896e^-4	0.566	INTRON Fas2	regulatory region REDfly_CRMs
3L	5361645	3L_5361645_SNP [dm3] 3L_5368545_SNP [dm6]	A	T	2.905e^-4	0.566	UPSTREAM CG10635 & 1 other INTERGENIC
X	7643628	X_7643628_SNP [dm3] X_7749595_SNP [dm6]	C	T	2.907e^-4	0.566	INTERGENIC
3R	7732676	3R_7732676_SNP [dm3] 3R_11906954_SNP [dm6]	A	G	2.930e^-4	0.566	INTRON Cad87A
2R	3827797	2R_3827797_SNP [dm3] 2R_7940292_SNP [dm6]	T	A	2.930e^-4	0.566	UPSTREAM CG30380 INTRON CG30379	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	3144808	3R_3144808_SNP [dm3] 3R_7319086_SNP [dm6]	A	T	2.935e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15127358	2R_15127358_SNP [dm3] 2R_19239853_SNP [dm6]	G	T	2.943e^-4	0.566	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5046805	2R_5046805_SNP [dm3] 2R_9159300_SNP [dm6]	G	A	2.947e^-4	0.566	INTRON CG8008
X	4499472	X_4499472_INS [dm3] X_4605439_INS [dm6]	T	TT	2.951e^-4	0.566	INTRON CR32773
3R	10508143	3R_10508143_SNP [dm3] 3R_14682421_SNP [dm6]	A	G	2.952e^-4	0.566	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6576195	2L_6576195_INS [dm3] 2L_6576195_INS [dm6]	A	ACCACATTTGTTA...	2.956e^-4	0.566	INTRON CG11319
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	2.960e^-4	0.566	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9219931	3L_9219931_SNP [dm3] 3L_9226831_SNP [dm6]	C	T	2.971e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13492330	2L_13492330_SNP [dm3] 2L_13492330_SNP [dm6]	G	A	2.975e^-4	0.566	INTRON CG42784
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	2.977e^-4	0.566	UPSTREAM CG10635 & 1 other INTERGENIC
3L	19967726	3L_19967726_SNP [dm3] 3L_19974626_SNP [dm6]	A	C	2.977e^-4	0.566	INTRON Ac76E
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	2.979e^-4	0.566	INTRON CG42313
2R	8410424	2R_8410424_SNP [dm3] 2R_12522919_SNP [dm6]	G	A	2.979e^-4	0.566	DOWNSTREAM CG33632 INTERGENIC	transposable element FlyBase
3R	13088596	3R_13088596_SNP [dm3] 3R_17262874_SNP [dm6]	C	T	2.979e^-4	0.566	INTRON beat-IIb
3L	5962545	3L_5962545_SNP [dm3] 3L_5969445_SNP [dm6]	G	A	2.980e^-4	0.566	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	18930613	3R_18930613_SNP [dm3] 3R_23104891_SNP [dm6]	T	C	2.983e^-4	0.566	INTRON CG13830
3L	2605379	3L_2605379_SNP [dm3] 3L_2605379_SNP [dm6]	T	A	2.991e^-4	0.566	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	19664319	2R_19664319_SNP [dm3] 2R_23776796_SNP [dm6]	T	G	2.993e^-4	0.566	INTRON CG9850
2L	14001563	2L_14001563_SNP [dm3] 2L_14001563_SNP [dm6]	G	C	2.995e^-4	0.566	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	9666289	X_9666289_SNP [dm3] X_9772256_SNP [dm6]	T	C	3.001e^-4	0.566	INTERGENIC
3R	22704476	3R_22704476_SNP [dm3] 3R_26878754_SNP [dm6]	A	G	3.001e^-4	0.566	INTRON CG5500 & 1 other
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	3.002e^-4	0.566	UTR_3_PRIME Ack DOWNSTREAM Chd64
3L	16673601	3L_16673601_SNP [dm3] 3L_16680501_SNP [dm6]	C	G	3.008e^-4	0.566	INTRON Lasp & 1 other
3L	16330519	3L_16330519_SNP [dm3] 3L_16337419_SNP [dm6]	T	A	3.009e^-4	0.566	INTERGENIC
2R	8880851	2R_8880851_SNP [dm3] 2R_12993346_SNP [dm6]	A	T	3.012e^-4	0.566	UPSTREAM CG33798 INTERGENIC
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	3.013e^-4	0.566	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	3.016e^-4	0.566	INTRON fru
3L	11348325	3L_11348325_SNP [dm3] 3L_11355225_SNP [dm6]	G	C	3.019e^-4	0.566	INTERGENIC
2L	6274150	2L_6274150_SNP [dm3] 2L_6274150_SNP [dm6]	G	T	3.019e^-4	0.566	INTRON Ddr
2L	12119331	2L_12119331_SNP [dm3] 2L_12119331_SNP [dm6]	C	T	3.020e^-4	0.566	INTRON CG17211
3L	3138213	3L_3138213_SNP [dm3] 3L_3138213_SNP [dm6]	G	A	3.020e^-4	0.566	INTRON CG11537
3L	10893212	3L_10893212_SNP [dm3] 3L_10900112_SNP [dm6]	G	A	3.021e^-4	0.566	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
3R	12528593	3R_12528593_SNP [dm3] 3R_16702871_SNP [dm6]	A	G	3.021e^-4	0.566	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	3.021e^-4	0.566	INTERGENIC
3R	7633242	3R_7633242_SNP [dm3] 3R_11807520_SNP [dm6]	A	G	3.023e^-4	0.566	UPSTREAM ClC-a INTRON ClC-a
2R	9149445	2R_9149445_SNP [dm3] 2R_13261940_SNP [dm6]	C	A	3.025e^-4	0.566	UPSTREAM CG42319 INTRON CG42319
X	8358419	X_8358419_SNP [dm3] X_8464386_SNP [dm6]	T	G	3.026e^-4	0.566	UTR_5_PRIME Sptr
3R	24059460	3R_24059460_SNP [dm3] 3R_28233738_SNP [dm6]	A	G	3.029e^-4	0.566	INTRON CG34354
3R	2748666	3R_2748666_SNP [dm3] 3R_6922944_SNP [dm6]	C	A	3.032e^-4	0.566	INTRON Antp	TF binding site BDTNP1_TFBS_dl

Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C25_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results