DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.153e^-23)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.1729	0.0023
In_3R_K	13.3753	0.0012

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3016 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.155e^-7	0.138	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	1.467e^-7	0.138	INTRON Cad87A
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	5.229e^-7	0.293	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	8.583e^-7	0.293	INTRON CG14877
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	1.004e^-6	0.293	INTRON CG10237
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.183e^-6	0.293	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	1.311e^-6	0.293	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	1.887e^-6	0.293	INTRON Cad87A
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	2.055e^-6	0.293	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	2.069e^-6	0.293	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	2.091e^-6	0.293	SYNONYMOUS_CODING beat-Vc
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	2.134e^-6	0.293	INTRON Cad87A
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	2.344e^-6	0.293	INTRON salm	TF binding site mE1_TFBS_inv
2L	5439524	2L_5439524_SNP [dm3] 2L_5439524_SNP [dm6]	T	A	2.430e^-6	0.293	UPSTREAM CR31647 INTERGENIC
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	2.963e^-6	0.293	INTRON Cad87A
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	3.073e^-6	0.293	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	3.213e^-6	0.293	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	3.462e^-6	0.293	DOWNSTREAM CG13991 INTERGENIC
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	3.478e^-6	0.293	INTRON Ca-beta
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	3.615e^-6	0.293	INTRON Cad87A
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	3.678e^-6	0.293	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	3.850e^-6	0.293	DOWNSTREAM ntc INTRON CG32264
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	3.886e^-6	0.293	INTRON beat-Vc
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	3.891e^-6	0.293	UPSTREAM CG44521 INTRON sif
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	3.958e^-6	0.293	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	4.082e^-6	0.293	INTRON CG45186
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	4.317e^-6	0.293	INTERGENIC
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	4.486e^-6	0.293	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	4.523e^-6	0.293	INTRON Cad87A
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	4.966e^-6	0.31	INTRON salm	TF binding site mE1_TFBS_inv
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	5.791e^-6	0.34	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	5.799e^-6	0.34	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	6.134e^-6	0.343	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	6.224e^-6	0.343	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	7.496e^-6	0.384	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	8.016e^-6	0.384	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	8.089e^-6	0.384	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	8.242e^-6	0.384	INTRON fru
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	8.639e^-6	0.384	INTRON Cad87A
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	8.705e^-6	0.384	INTRON salm
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	8.776e^-6	0.384	INTERGENIC
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	8.907e^-6	0.384	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3L	8196494	3L_8196494_SNP [dm3] 3L_8203394_SNP [dm6]	G	A	9.023e^-6	0.384	UPSTREAM CG7366 DOWNSTREAM CG13679 INTERGENIC
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	9.059e^-6	0.384	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	9.427e^-6	0.384	INTRON Cad87A
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	9.586e^-6	0.384	INTRON Cad87A
3R	10186956	3R_10186956_SNP [dm3] 3R_14361234_SNP [dm6]	T	A	9.835e^-6	0.384	UTR_5_PRIME CG31320 INTRON NK7.1
3L	5962353	3L_5962353_SNP [dm3] 3L_5969253_SNP [dm6]	C	T	1.037e^-5	0.384	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	1.039e^-5	0.384	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3R	13087936	3R_13087936_SNP [dm3] 3R_17262214_SNP [dm6]	A	G	1.056e^-5	0.384	INTRON beat-IIb
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.121e^-5	0.384	INTRON salm
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	1.137e^-5	0.384	INTERGENIC
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	1.142e^-5	0.384	INTERGENIC
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	1.142e^-5	0.384	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	1.144e^-5	0.384	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3L	3755751	3L_3755751_MNP [dm3] 3L_3755751_MNP [dm6]	GCC	CAA	1.146e^-5	0.384	UPSTREAM ppk27 INTRON CG32264
3R	7727598	3R_7727598_SNP [dm3] 3R_11901876_SNP [dm6]	T	C	1.179e^-5	0.388	SYNONYMOUS_CODING Cad87A
3L	8100732	3L_8100732_SNP [dm3] 3L_8107632_SNP [dm6]	C	T	1.205e^-5	0.389	INTRON Ect4	TF binding site BDTNP1_TFBS_twi
3R	7727619	3R_7727619_SNP [dm3] 3R_11901897_SNP [dm6]	G	A	1.237e^-5	0.389	SYNONYMOUS_CODING Cad87A
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	1.244e^-5	0.389	INTRON beat-Vc
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	1.272e^-5	0.391	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	1.347e^-5	0.408	INTRON salm
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	1.388e^-5	0.413	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2936931	2L_2936931_SNP [dm3] 2L_2936931_SNP [dm6]	C	A	1.451e^-5	0.416	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.453e^-5	0.416	INTRON 4EHP
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	1.505e^-5	0.416	INTRON beat-Vc
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	1.512e^-5	0.416	INTRON salm
3R	7114083	3R_7114083_SNP [dm3] 3R_11288361_SNP [dm6]	C	G	1.555e^-5	0.416	INTRON CR31386
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	1.571e^-5	0.416	INTERGENIC
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	1.576e^-5	0.416	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	1.672e^-5	0.416	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	1.674e^-5	0.416	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20898816	3R_20898816_SNP [dm3] 3R_25073094_SNP [dm6]	A	G	1.679e^-5	0.416	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3R	8885665	3R_8885665_SNP [dm3] 3R_13059943_SNP [dm6]	A	G	1.688e^-5	0.416	INTRON sim	TF binding site BDTNP1_TFBS_prd
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	1.727e^-5	0.416	INTRON Octbeta3R
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	1.745e^-5	0.416	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	1.747e^-5	0.416	INTRON Cad87A
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	1.749e^-5	0.416	INTRON salm
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	1.759e^-5	0.416	UPSTREAM CG10635 & 1 other INTERGENIC
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	1.797e^-5	0.416	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
X	7243100	X_7243100_SNP [dm3] X_7349067_SNP [dm6]	C	T	1.811e^-5	0.416	INTRON CR44357 & 1 other
3R	11587690	3R_11587690_SNP [dm3] 3R_15761968_SNP [dm6]	T	C	1.834e^-5	0.416	INTERGENIC
2R	10071218	2R_10071218_SNP [dm3] 2R_14183713_SNP [dm6]	T	A	1.839e^-5	0.416	DOWNSTREAM cg INTERGENIC
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	1.886e^-5	0.421	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	1.914e^-5	0.422	INTRON Ca-beta
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	1.957e^-5	0.424	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	1.991e^-5	0.424	INTRON Cad87A
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	1.992e^-5	0.424	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	2.010e^-5	0.424	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8888572	3R_8888572_INS [dm3] 3R_13062850_INS [dm6]	T	TACGGTTTATAGT...	2.064e^-5	0.43	INTRON sim
3R	7751030	3R_7751030_SNP [dm3] 3R_11925308_SNP [dm6]	T	A	2.161e^-5	0.438	INTRON Cad87A
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	2.162e^-5	0.438	INTRON salm
3R	14284899	3R_14284899_SNP [dm3] 3R_18459177_SNP [dm6]	G	A	2.193e^-5	0.438	INTRON fru	TF binding site mE1_TFBS_inv
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	2.197e^-5	0.438	INTRON par-1
X	11227495	X_11227495_SNP [dm3] X_11333462_SNP [dm6]	C	T	2.264e^-5	0.438	SYNONYMOUS_CODING CG1657 DOWNSTREAM Kap3	TF binding site mE1_TFBS_cad
2L	14694482	2L_14694482_SNP [dm3] 2L_14694482_SNP [dm6]	T	C	2.288e^-5	0.438	INTERGENIC
3R	7112350	3R_7112350_SNP [dm3] 3R_11286628_SNP [dm6]	G	A	2.297e^-5	0.438	INTRON CR31386
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	2.346e^-5	0.438	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3755798	3L_3755798_SNP [dm3] 3L_3755798_SNP [dm6]	C	G	2.351e^-5	0.438	UPSTREAM ppk27 INTRON CG32264
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	2.366e^-5	0.438	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C25_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results