DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.434e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01484
In_3R_K	0.01004

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.2008	0.0037
In_3R_K	11.4831	0.0032

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2397 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	4.299e^-8	0.054	INTRON salm
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	5.742e^-8	0.054	INTRON salm
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	2.446e^-7	0.126	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	2.956e^-7	0.126	UPSTREAM CG44521 INTRON sif
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	3.358e^-7	0.126	NON_SYNONYMOUS_CODING Fad2
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	5.850e^-7	0.132	INTRON salm
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	6.517e^-7	0.132	INTRON salm
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	6.977e^-7	0.132	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	7.197e^-7	0.132	SYNONYMOUS_CODING Lim1
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	7.457e^-7	0.132	INTRON salm
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	9.097e^-7	0.132	SYNONYMOUS_CODING beat-Vc
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	9.143e^-7	0.132	INTRON salm
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	9.256e^-7	0.132	INTRON salm
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	9.836e^-7	0.132	INTRON salm
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	1.276e^-6	0.153	INTRON salm
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	1.301e^-6	0.153	INTRON salm
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	1.539e^-6	0.166	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	1.997e^-6	0.166	INTRON salm
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	2.031e^-6	0.166	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	2.088e^-6	0.166	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11553642	2L_11553642_SNP [dm3] 2L_11553642_SNP [dm6]	C	T	2.098e^-6	0.166	INTERGENIC
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	2.142e^-6	0.166	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	2.198e^-6	0.166	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	2.198e^-6	0.166	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	2.218e^-6	0.166	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	2.519e^-6	0.179	INTERGENIC	regulatory region REDfly_CRMs
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	2.578e^-6	0.179	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18982377	3R_18982377_SNP [dm3] 3R_23156655_SNP [dm6]	C	T	2.868e^-6	0.192	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	3.276e^-6	0.207	INTRON salm
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	3.451e^-6	0.207	INTRON salm
3L	11519695	3L_11519695_SNP [dm3] 3L_11526595_SNP [dm6]	C	A	3.595e^-6	0.207	INTRON Mob2
2L	9982693	2L_9982693_SNP [dm3] 2L_9982693_SNP [dm6]	C	A	3.711e^-6	0.207	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	3.716e^-6	0.207	INTRON salm
2L	9982627	2L_9982627_SNP [dm3] 2L_9982627_SNP [dm6]	T	A	3.855e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	4.014e^-6	0.207	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	4.068e^-6	0.207	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	4355966	3L_4355966_SNP [dm3] 3L_4355966_SNP [dm6]	C	T	4.189e^-6	0.207	INTRON Cip4
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	4.278e^-6	0.207	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9982705	2L_9982705_SNP [dm3] 2L_9982705_SNP [dm6]	T	G	4.419e^-6	0.207	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982648	2L_9982648_SNP [dm3] 2L_9982648_SNP [dm6]	A	G	4.531e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs
2R	19711631	2R_19711631_SNP [dm3] 2R_23824108_SNP [dm6]	T	C	4.762e^-6	0.207	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	4.844e^-6	0.207	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16903274	3L_16903274_SNP [dm3] 3L_16910174_SNP [dm6]	C	A	4.853e^-6	0.207	INTRON Lmpt
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	5.078e^-6	0.207	INTRON salm	TF binding site mE1_TFBS_inv
2L	9982644	2L_9982644_SNP [dm3] 2L_9982644_SNP [dm6]	T	G	5.127e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs
3L	11519718	3L_11519718_SNP [dm3] 3L_11526618_SNP [dm6]	T	A	5.141e^-6	0.207	INTRON Mob2
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	5.191e^-6	0.207	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	5.470e^-6	0.212	UTR_3_PRIME Teh1
2L	14784057	2L_14784057_SNP [dm3] 2L_14784057_SNP [dm6]	C	T	5.535e^-6	0.212	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11427499	2L_11427499_SNP [dm3] 2L_11427499_SNP [dm6]	A	G	5.697e^-6	0.214	INTERGENIC
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	6.080e^-6	0.221	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	6.299e^-6	0.221	UTR_5_PRIME CG15186
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	6.320e^-6	0.221	INTRON salm
2L	16855339	2L_16855339_SNP [dm3] 2L_16855339_SNP [dm6]	C	G	6.374e^-6	0.221	INTRON CG31809
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	6.630e^-6	0.226	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	6.856e^-6	0.23	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	11519697	3L_11519697_SNP [dm3] 3L_11526597_SNP [dm6]	A	G	7.157e^-6	0.233	INTRON Mob2
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	7.310e^-6	0.233	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	7.334e^-6	0.233	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	8.247e^-6	0.258	INTRON salm
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	8.420e^-6	0.259	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	8.796e^-6	0.261	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18982407	3R_18982407_SNP [dm3] 3R_23156685_SNP [dm6]	A	T	8.881e^-6	0.261	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	8.934e^-6	0.261	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15103393	3R_15103393_SNP [dm3] 3R_19277671_SNP [dm6]	A	T	9.028e^-6	0.261	INTERGENIC
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	9.376e^-6	0.266	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11472129	2L_11472129_SNP [dm3] 2L_11472129_SNP [dm6]	A	G	1.030e^-5	0.287	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22115690	3R_22115690_SNP [dm3] 3R_26289968_SNP [dm6]	T	A	1.041e^-5	0.287	INTERGENIC
X	7243100	X_7243100_SNP [dm3] X_7349067_SNP [dm6]	C	T	1.097e^-5	0.294	INTRON CR44357 & 1 other
3R	22115699	3R_22115699_SNP [dm3] 3R_26289977_SNP [dm6]	A	G	1.098e^-5	0.294	INTERGENIC
2L	9982650	2L_9982650_SNP [dm3] 2L_9982650_SNP [dm6]	C	T	1.159e^-5	0.303	INTERGENIC	regulatory region REDfly_CRMs
X	7243355	X_7243355_SNP [dm3] X_7349322_SNP [dm6]	T	G	1.188e^-5	0.303	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5706229	3L_5706229_SNP [dm3] 3L_5713129_SNP [dm6]	A	T	1.191e^-5	0.303	UPSTREAM CG44521 INTRON sif
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	1.197e^-5	0.303	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22115635	3R_22115635_SNP [dm3] 3R_26289913_SNP [dm6]	C	A	1.230e^-5	0.308	INTERGENIC
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	1.252e^-5	0.309	INTERGENIC
3R	18982542	3R_18982542_SNP [dm3] 3R_23156820_SNP [dm6]	A	G	1.283e^-5	0.309	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11465743	2L_11465743_SNP [dm3] 2L_11465743_SNP [dm6]	T	C	1.310e^-5	0.309	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	11172923	3L_11172923_SNP [dm3] 3L_11179823_SNP [dm6]	A	G	1.312e^-5	0.309	INTRON GlcAT-P
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	1.318e^-5	0.309	INTERGENIC
2R	20064422	2R_20064422_SNP [dm3] 2R_24176899_SNP [dm6]	T	C	1.351e^-5	0.313	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	1.392e^-5	0.318	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14788377	2L_14788377_SNP [dm3] 2L_14788377_SNP [dm6]	G	A	1.427e^-5	0.322	INTERGENIC
2L	9982741	2L_9982741_SNP [dm3] 2L_9982741_SNP [dm6]	A	T	1.443e^-5	0.322	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	1.481e^-5	0.327	INTRON salm
3R	18982406	3R_18982406_SNP [dm3] 3R_23156684_SNP [dm6]	A	T	1.618e^-5	0.353	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3L	1617231	3L_1617231_SNP [dm3] 3L_1617231_SNP [dm6]	A	C	1.772e^-5	0.382	NON_SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 DOWNSTREAM CG13926
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.811e^-5	0.383	INTERGENIC
3R	21045824	3R_21045824_SNP [dm3] 3R_25220102_SNP [dm6]	C	T	1.819e^-5	0.383	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
2L	9982743	2L_9982743_SNP [dm3] 2L_9982743_SNP [dm6]	C	G	1.926e^-5	0.401	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	14844829	3R_14844829_SNP [dm3] 3R_19019107_SNP [dm6]	A	G	1.944e^-5	0.401	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	2.046e^-5	0.412	INTRON salm
3R	8765807	3R_8765807_SNP [dm3] 3R_12940085_SNP [dm6]	G	C	2.067e^-5	0.412	INTERGENIC
2L	14784018	2L_14784018_SNP [dm3] 2L_14784018_SNP [dm6]	C	T	2.067e^-5	0.412	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	2.098e^-5	0.414	INTRON salm
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	2.150e^-5	0.42	INTRON salm
2L	13485370	2L_13485370_SNP [dm3] 2L_13485370_SNP [dm6]	A	G	2.185e^-5	0.422	INTRON CG42784
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	2.222e^-5	0.422	INTRON Cad87A
2R	20064433	2R_20064433_SNP [dm3] 2R_24176910_SNP [dm6]	C	T	2.226e^-5	0.422	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	2.259e^-5	0.423	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_9_13_C25_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results