DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.434e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01484
In_3R_K	0.01004

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.2008	0.0037
In_3R_K	11.4831	0.0032

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2397 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	4.299e^-8	0.054	INTRON salm
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	5.742e^-8	0.054	INTRON salm
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	2.446e^-7	0.126	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	2.956e^-7	0.126	UPSTREAM CG44521 INTRON sif
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	3.358e^-7	0.126	NON_SYNONYMOUS_CODING Fad2
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	5.850e^-7	0.132	INTRON salm
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	6.517e^-7	0.132	INTRON salm
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	6.977e^-7	0.132	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	7.197e^-7	0.132	SYNONYMOUS_CODING Lim1
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	7.457e^-7	0.132	INTRON salm
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	9.097e^-7	0.132	SYNONYMOUS_CODING beat-Vc
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	9.143e^-7	0.132	INTRON salm
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	9.256e^-7	0.132	INTRON salm
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	9.836e^-7	0.132	INTRON salm
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	1.276e^-6	0.153	INTRON salm
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	1.301e^-6	0.153	INTRON salm
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	1.539e^-6	0.166	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	1.997e^-6	0.166	INTRON salm
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	2.031e^-6	0.166	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	2.088e^-6	0.166	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11553642	2L_11553642_SNP [dm3] 2L_11553642_SNP [dm6]	C	T	2.098e^-6	0.166	INTERGENIC
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	2.142e^-6	0.166	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	2.198e^-6	0.166	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	2.198e^-6	0.166	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	2.218e^-6	0.166	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	2.519e^-6	0.179	INTERGENIC	regulatory region REDfly_CRMs
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	2.578e^-6	0.179	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18982377	3R_18982377_SNP [dm3] 3R_23156655_SNP [dm6]	C	T	2.868e^-6	0.192	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	3.276e^-6	0.207	INTRON salm
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	3.451e^-6	0.207	INTRON salm
3L	11519695	3L_11519695_SNP [dm3] 3L_11526595_SNP [dm6]	C	A	3.595e^-6	0.207	INTRON Mob2
2L	9982693	2L_9982693_SNP [dm3] 2L_9982693_SNP [dm6]	C	A	3.711e^-6	0.207	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	3.716e^-6	0.207	INTRON salm
2L	9982627	2L_9982627_SNP [dm3] 2L_9982627_SNP [dm6]	T	A	3.855e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	4.014e^-6	0.207	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	4.068e^-6	0.207	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	4355966	3L_4355966_SNP [dm3] 3L_4355966_SNP [dm6]	C	T	4.189e^-6	0.207	INTRON Cip4
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	4.278e^-6	0.207	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9982705	2L_9982705_SNP [dm3] 2L_9982705_SNP [dm6]	T	G	4.419e^-6	0.207	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982648	2L_9982648_SNP [dm3] 2L_9982648_SNP [dm6]	A	G	4.531e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs
2R	19711631	2R_19711631_SNP [dm3] 2R_23824108_SNP [dm6]	T	C	4.762e^-6	0.207	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	4.844e^-6	0.207	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16903274	3L_16903274_SNP [dm3] 3L_16910174_SNP [dm6]	C	A	4.853e^-6	0.207	INTRON Lmpt
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	5.078e^-6	0.207	INTRON salm	TF binding site mE1_TFBS_inv
2L	9982644	2L_9982644_SNP [dm3] 2L_9982644_SNP [dm6]	T	G	5.127e^-6	0.207	INTERGENIC	regulatory region REDfly_CRMs
3L	11519718	3L_11519718_SNP [dm3] 3L_11526618_SNP [dm6]	T	A	5.141e^-6	0.207	INTRON Mob2
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	5.191e^-6	0.207	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	5.470e^-6	0.212	UTR_3_PRIME Teh1
2L	14784057	2L_14784057_SNP [dm3] 2L_14784057_SNP [dm6]	C	T	5.535e^-6	0.212	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11427499	2L_11427499_SNP [dm3] 2L_11427499_SNP [dm6]	A	G	5.697e^-6	0.214	INTERGENIC
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	6.080e^-6	0.221	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	6.299e^-6	0.221	UTR_5_PRIME CG15186
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	6.320e^-6	0.221	INTRON salm
2L	16855339	2L_16855339_SNP [dm3] 2L_16855339_SNP [dm6]	C	G	6.374e^-6	0.221	INTRON CG31809
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	6.630e^-6	0.226	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	6.856e^-6	0.23	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	11519697	3L_11519697_SNP [dm3] 3L_11526597_SNP [dm6]	A	G	7.157e^-6	0.233	INTRON Mob2
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	7.310e^-6	0.233	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	7.334e^-6	0.233	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	8.247e^-6	0.258	INTRON salm
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	8.420e^-6	0.259	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	8.796e^-6	0.261	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18982407	3R_18982407_SNP [dm3] 3R_23156685_SNP [dm6]	A	T	8.881e^-6	0.261	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	8.934e^-6	0.261	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15103393	3R_15103393_SNP [dm3] 3R_19277671_SNP [dm6]	A	T	9.028e^-6	0.261	INTERGENIC
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	9.376e^-6	0.266	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11472129	2L_11472129_SNP [dm3] 2L_11472129_SNP [dm6]	A	G	1.030e^-5	0.287	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22115690	3R_22115690_SNP [dm3] 3R_26289968_SNP [dm6]	T	A	1.041e^-5	0.287	INTERGENIC
X	7243100	X_7243100_SNP [dm3] X_7349067_SNP [dm6]	C	T	1.097e^-5	0.294	INTRON CR44357 & 1 other
3R	22115699	3R_22115699_SNP [dm3] 3R_26289977_SNP [dm6]	A	G	1.098e^-5	0.294	INTERGENIC
2L	9982650	2L_9982650_SNP [dm3] 2L_9982650_SNP [dm6]	C	T	1.159e^-5	0.303	INTERGENIC	regulatory region REDfly_CRMs
X	7243355	X_7243355_SNP [dm3] X_7349322_SNP [dm6]	T	G	1.188e^-5	0.303	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5706229	3L_5706229_SNP [dm3] 3L_5713129_SNP [dm6]	A	T	1.191e^-5	0.303	UPSTREAM CG44521 INTRON sif
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	1.197e^-5	0.303	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22115635	3R_22115635_SNP [dm3] 3R_26289913_SNP [dm6]	C	A	1.230e^-5	0.308	INTERGENIC
3R	6762060	3R_6762060_SNP [dm3] 3R_10936338_SNP [dm6]	G	C	1.252e^-5	0.309	INTERGENIC
3R	18982542	3R_18982542_SNP [dm3] 3R_23156820_SNP [dm6]	A	G	1.283e^-5	0.309	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11465743	2L_11465743_SNP [dm3] 2L_11465743_SNP [dm6]	T	C	1.310e^-5	0.309	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	11172923	3L_11172923_SNP [dm3] 3L_11179823_SNP [dm6]	A	G	1.312e^-5	0.309	INTRON GlcAT-P
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	1.318e^-5	0.309	INTERGENIC
2R	20064422	2R_20064422_SNP [dm3] 2R_24176899_SNP [dm6]	T	C	1.351e^-5	0.313	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	1.392e^-5	0.318	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14788377	2L_14788377_SNP [dm3] 2L_14788377_SNP [dm6]	G	A	1.427e^-5	0.322	INTERGENIC
2L	9982741	2L_9982741_SNP [dm3] 2L_9982741_SNP [dm6]	A	T	1.443e^-5	0.322	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	1.481e^-5	0.327	INTRON salm
3R	18982406	3R_18982406_SNP [dm3] 3R_23156684_SNP [dm6]	A	T	1.618e^-5	0.353	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3L	1617231	3L_1617231_SNP [dm3] 3L_1617231_SNP [dm6]	A	C	1.772e^-5	0.382	NON_SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 DOWNSTREAM CG13926
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.811e^-5	0.383	INTERGENIC
3R	21045824	3R_21045824_SNP [dm3] 3R_25220102_SNP [dm6]	C	T	1.819e^-5	0.383	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
2L	9982743	2L_9982743_SNP [dm3] 2L_9982743_SNP [dm6]	C	G	1.926e^-5	0.401	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	14844829	3R_14844829_SNP [dm3] 3R_19019107_SNP [dm6]	A	G	1.944e^-5	0.401	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	2.046e^-5	0.412	INTRON salm
3R	8765807	3R_8765807_SNP [dm3] 3R_12940085_SNP [dm6]	G	C	2.067e^-5	0.412	INTERGENIC
2L	14784018	2L_14784018_SNP [dm3] 2L_14784018_SNP [dm6]	C	T	2.067e^-5	0.412	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	2.098e^-5	0.414	INTRON salm
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	2.150e^-5	0.42	INTRON salm
2L	13485370	2L_13485370_SNP [dm3] 2L_13485370_SNP [dm6]	A	G	2.185e^-5	0.422	INTRON CG42784
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	2.222e^-5	0.422	INTRON Cad87A
2R	20064433	2R_20064433_SNP [dm3] 2R_24176910_SNP [dm6]	C	T	2.226e^-5	0.422	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	2.259e^-5	0.423	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18751523	3L_18751523_SNP [dm3] 3L_18758423_SNP [dm6]	G	A	2.308e^-5	0.423	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	14783992	2L_14783992_SNP [dm3] 2L_14783992_SNP [dm6]	C	T	2.314e^-5	0.423	NON_SYNONYMOUS_CODING CG18636 SPLICE_SITE_REGION CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	2.323e^-5	0.423	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	5706285	3L_5706285_SNP [dm3] 3L_5713185_SNP [dm6]	C	G	2.372e^-5	0.428	UPSTREAM CG44521 INTRON sif
3R	4151720	3R_4151720_SNP [dm3] 3R_8325998_SNP [dm6]	A	C	2.405e^-5	0.429	DOWNSTREAM CG7443 INTRON Poxm
3R	1619335	3R_1619335_SNP [dm3] 3R_5793613_SNP [dm6]	A	G	2.457e^-5	0.429	DOWNSTREAM CG1218 INTRON CG2046	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	1635739	3R_1635739_SNP [dm3] 3R_5810017_SNP [dm6]	A	G	2.465e^-5	0.429	UTR_3_PRIME CG11000
3R	6856799	3R_6856799_SNP [dm3] 3R_11031077_SNP [dm6]	G	T	2.479e^-5	0.429	INTRON CG34114
X	7243362	X_7243362_SNP [dm3] X_7349329_SNP [dm6]	G	C	2.528e^-5	0.429	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1629316	3R_1629316_SNP [dm3] 3R_5803594_SNP [dm6]	G	T	2.552e^-5	0.429	INTRON CG11000
3R	1623438	3R_1623438_SNP [dm3] 3R_5797716_SNP [dm6]	C	G	2.579e^-5	0.429	SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da
2L	11472124	2L_11472124_SNP [dm3] 2L_11472124_SNP [dm6]	T	A	2.586e^-5	0.429	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11442767	2L_11442767_SNP [dm3] 2L_11442767_SNP [dm6]	T	C	2.587e^-5	0.429	INTRON salm
3R	1619191	3R_1619191_SNP [dm3] 3R_5793469_SNP [dm6]	T	G	2.612e^-5	0.43	NON_SYNONYMOUS_CODING CG2046 DOWNSTREAM CG1218	TF binding site mE1_TFBS_sens
3L	18126361	3L_18126361_SNP [dm3] 3L_18133261_SNP [dm6]	C	T	2.683e^-5	0.438	UPSTREAM Cyp312a1 INTERGENIC
3R	8582440	3R_8582440_SNP [dm3] 3R_12756718_SNP [dm6]	G	T	2.723e^-5	0.44	INTRON beat-Vc
3R	22115678	3R_22115678_SNP [dm3] 3R_26289956_SNP [dm6]	A	T	2.760e^-5	0.44	INTERGENIC
3L	7433717	3L_7433717_SNP [dm3] 3L_7440617_SNP [dm6]	G	A	2.809e^-5	0.44	SYNONYMOUS_CODING sphinx2 INTRON CG42458
3R	15102348	3R_15102348_INS [dm3] 3R_19276626_INS [dm6]	T	TT	2.824e^-5	0.44	INTERGENIC
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	2.824e^-5	0.44	INTRON 4EHP
X	8532109	X_8532109_SNP [dm3] X_8638076_SNP [dm6]	T	G	2.853e^-5	0.44	INTRON oc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	9774826	2L_9774826_SNP [dm3] 2L_9774826_SNP [dm6]	A	G	2.863e^-5	0.44	NON_SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5895504	3R_5895504_SNP [dm3] 3R_10069782_SNP [dm6]	T	A	2.942e^-5	0.449	INTERGENIC
3R	18983447	3R_18983447_SNP [dm3] 3R_23157725_SNP [dm6]	G	A	3.001e^-5	0.45	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16492368	3L_16492368_SNP [dm3] 3L_16499268_SNP [dm6]	G	A	3.024e^-5	0.45	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	3.053e^-5	0.45	INTRON CG34114
X	15217828	X_15217828_SNP [dm3] X_15323795_SNP [dm6]	G	C	3.065e^-5	0.45	INTRON Top1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	27082889	3R_27082889_SNP [dm3] 3R_31257167_SNP [dm6]	A	G	3.072e^-5	0.45	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
2R	8266304	2R_8266304_SNP [dm3] 2R_12378799_SNP [dm6]	G	A	3.161e^-5	0.457	NON_SYNONYMOUS_CODING Cpr49Ab DOWNSTREAM CG13155	TF binding site mE1_TFBS_cad
2L	14784020	2L_14784020_SNP [dm3] 2L_14784020_SNP [dm6]	A	G	3.186e^-5	0.457	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20064454	2R_20064454_SNP [dm3] 2R_24176931_SNP [dm6]	G	C	3.192e^-5	0.457	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
3L	6285973	3L_6285973_DEL [dm3] 3L_6292873_DEL [dm6]	CCAT	G	3.240e^-5	0.46	INTERGENIC
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	3.334e^-5	0.469	INTERGENIC
2L	11442524	2L_11442524_SNP [dm3] 2L_11442524_SNP [dm6]	G	T	3.348e^-5	0.469	INTRON salm
3R	3205159	3R_3205159_SNP [dm3] 3R_7379437_SNP [dm6]	A	G	3.422e^-5	0.475	INTERGENIC
2L	9982510	2L_9982510_SNP [dm3] 2L_9982510_SNP [dm6]	C	T	3.454e^-5	0.476	INTERGENIC	regulatory region REDfly_CRMs
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	3.507e^-5	0.476	INTRON salm
2L	14786256	2L_14786256_SNP [dm3] 2L_14786256_SNP [dm6]	T	A	3.521e^-5	0.476	INTERGENIC
3R	21045832	3R_21045832_SNP [dm3] 3R_25220110_SNP [dm6]	C	T	3.531e^-5	0.476	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	3.572e^-5	0.479	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2961269	2L_2961269_SNP [dm3] 2L_2961269_SNP [dm6]	G	A	3.627e^-5	0.482	SYNONYMOUS_CODING Rbp9
3L	5706253	3L_5706253_SNP [dm3] 3L_5713153_SNP [dm6]	A	G	3.653e^-5	0.482	UPSTREAM CG44521 INTRON sif
X	8439912	X_8439912_SNP [dm3] X_8545879_SNP [dm6]	C	T	3.725e^-5	0.487	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14788313	2L_14788313_SNP [dm3] 2L_14788313_SNP [dm6]	A	T	3.737e^-5	0.487	INTERGENIC
3R	8572747	3R_8572747_SNP [dm3] 3R_12747025_SNP [dm6]	C	T	3.761e^-5	0.487	NON_SYNONYMOUS_CODING beat-Vc
3R	6547465	3R_6547465_SNP [dm3] 3R_10721743_SNP [dm6]	T	C	3.794e^-5	0.487	INTERGENIC
2L	11454725	2L_11454725_SNP [dm3] 2L_11454725_SNP [dm6]	G	A	3.815e^-5	0.487	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	3.874e^-5	0.491	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16330711	3L_16330711_SNP [dm3] 3L_16337611_SNP [dm6]	T	C	3.933e^-5	0.495	INTERGENIC
3R	3205092	3R_3205092_SNP [dm3] 3R_7379370_SNP [dm6]	A	C	4.056e^-5	0.504	INTERGENIC
X	8727917	X_8727917_SNP [dm3] X_8833884_SNP [dm6]	T	A	4.174e^-5	0.504	INTERGENIC
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	4.192e^-5	0.504	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	4.206e^-5	0.504	INTRON Cyp313a4
3R	18983465	3R_18983465_SNP [dm3] 3R_23157743_SNP [dm6]	A	T	4.223e^-5	0.504	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13485378	2L_13485378_SNP [dm3] 2L_13485378_SNP [dm6]	T	A	4.250e^-5	0.504	INTRON CG42784
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	4.280e^-5	0.504	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8567206	3R_8567206_SNP [dm3] 3R_12741484_SNP [dm6]	A	T	4.283e^-5	0.504	DOWNSTREAM CG5999 & 1 other INTERGENIC
3R	14844830	3R_14844830_SNP [dm3] 3R_19019108_SNP [dm6]	A	C	4.284e^-5	0.504	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9425183	3L_9425183_SNP [dm3] 3L_9432083_SNP [dm6]	A	G	4.290e^-5	0.504	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8552596	X_8552596_SNP [dm3] X_8658563_SNP [dm6]	A	G	4.302e^-5	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13486037	2L_13486037_SNP [dm3] 2L_13486037_SNP [dm6]	G	A	4.345e^-5	0.504	INTRON CG42784
2L	11443884	2L_11443884_DEL [dm3] 2L_11443884_DEL [dm6]	TT	T	4.356e^-5	0.504	INTRON salm
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	4.417e^-5	0.505	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	4.418e^-5	0.505	INTRON salm	TF binding site mE1_TFBS_inv
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	4.553e^-5	0.518	INTERGENIC
2R	12327922	2R_12327922_SNP [dm3] 2R_16440417_SNP [dm6]	G	T	4.627e^-5	0.523	INTERGENIC
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	4.656e^-5	0.523	INTERGENIC
2L	11466020	2L_11466020_SNP [dm3] 2L_11466020_SNP [dm6]	A	T	4.717e^-5	0.525	INTERGENIC
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	4.729e^-5	0.525	INTRON salm
3L	13188177	3L_13188177_SNP [dm3] 3L_13195077_SNP [dm6]	T	G	4.756e^-5	0.525	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16229363	2L_16229363_SNP [dm3] 2L_16229363_SNP [dm6]	T	G	4.793e^-5	0.525	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18983515	3R_18983515_SNP [dm3] 3R_23157793_SNP [dm6]	T	C	4.840e^-5	0.525	SYNONYMOUS_CODING unk DOWNSTREAM VhaAC39-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18983464	3R_18983464_SNP [dm3] 3R_23157742_SNP [dm6]	A	C	4.845e^-5	0.525	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5706278	3L_5706278_SNP [dm3] 3L_5713178_SNP [dm6]	C	G	4.913e^-5	0.527	UPSTREAM CG44521 INTRON sif
2R	7384368	2R_7384368_SNP [dm3] 2R_11496863_SNP [dm6]	G	A	4.937e^-5	0.527	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	4.976e^-5	0.527	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11471989	2L_11471989_SNP [dm3] 2L_11471989_SNP [dm6]	T	C	5.056e^-5	0.527	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	5.060e^-5	0.527	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3R	1612953	3R_1612953_INS [dm3] 3R_5787231_INS [dm6]	T	TCT	5.074e^-5	0.527	UTR_3_PRIME kat-60L1 DOWNSTREAM CG2051	TF binding site mE1_TFBS_cad
X	7243316	X_7243316_SNP [dm3] X_7349283_SNP [dm6]	T	C	5.096e^-5	0.527	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6661988	2R_6661988_SNP [dm3] 2R_10774483_SNP [dm6]	G	A	5.120e^-5	0.527	INTRON CG33144
2L	11406488	2L_11406488_SNP [dm3] 2L_11406488_SNP [dm6]	G	T	5.143e^-5	0.527	INTERGENIC	regulatory region REDfly_CRMs
2L	11442663	2L_11442663_SNP [dm3] 2L_11442663_SNP [dm6]	A	T	5.179e^-5	0.527	INTRON salm
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	5.192e^-5	0.527	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11412574	2L_11412574_SNP [dm3] 2L_11412574_SNP [dm6]	C	G	5.197e^-5	0.527	INTERGENIC	regulatory region REDfly_CRMs
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	5.225e^-5	0.527	INTRON salm
2L	13482491	2L_13482491_SNP [dm3] 2L_13482491_SNP [dm6]	C	G	5.316e^-5	0.533	INTRON CG42784
2L	6232334	2L_6232334_SNP [dm3] 2L_6232334_SNP [dm6]	T	A	5.370e^-5	0.536	DOWNSTREAM CR44823 INTERGENIC
2L	13486058	2L_13486058_INS [dm3] 2L_13486058_INS [dm6]	T	TT	5.433e^-5	0.536	INTRON CG42784
2L	10832406	2L_10832406_SNP [dm3] 2L_10832406_SNP [dm6]	C	T	5.477e^-5	0.536	INTRON Nos
3R	17450704	3R_17450704_DEL [dm3] 3R_21624982_DEL [dm6]	AGA	A	5.500e^-5	0.536	INTRON E2f	TF binding site mE1_TFBS_cad
2R	19063283	2R_19063283_SNP [dm3] 2R_23175760_SNP [dm6]	C	A	5.516e^-5	0.536	INTRON CG34371
2L	507635	2L_507635_SNP [dm3] 2L_507635_SNP [dm6]	A	C	5.519e^-5	0.536	INTRON ush
3R	6537960	3R_6537960_SNP [dm3] 3R_10712238_SNP [dm6]	A	C	5.599e^-5	0.539	UPSTREAM CG14689 INTERGENIC
3L	11172885	3L_11172885_SNP [dm3] 3L_11179785_SNP [dm6]	G	A	5.651e^-5	0.539	INTRON GlcAT-P
3R	5129307	3R_5129307_SNP [dm3] 3R_9303585_SNP [dm6]	G	A	5.653e^-5	0.539	INTRON CG8861
2L	13582721	2L_13582721_SNP [dm3] 2L_13582721_SNP [dm6]	A	T	5.689e^-5	0.539	INTRON kuz EXON CR44973
3R	765962	3R_765962_SNP [dm3] 3R_4940240_SNP [dm6]	A	C	5.692e^-5	0.539	DOWNSTREAM Cdep INTRON Cdep
2L	11447890	2L_11447890_SNP [dm3] 2L_11447890_SNP [dm6]	T	A	5.747e^-5	0.542	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11242509	3L_11242509_SNP [dm3] 3L_11249409_SNP [dm6]	G	C	5.845e^-5	0.546	EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	6523079	3R_6523079_SNP [dm3] 3R_10697357_SNP [dm6]	A	T	5.887e^-5	0.546	INTRON CG14683 & 1 other	TF binding site BDTNP1_TFBS_da
2L	11354595	2L_11354595_SNP [dm3] 2L_11354595_SNP [dm6]	T	A	5.908e^-5	0.546	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3L	7434089	3L_7434089_SNP [dm3] 3L_7440989_SNP [dm6]	A	C	5.915e^-5	0.546	UPSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19251764	2L_19251764_SNP [dm3] 2L_19251764_SNP [dm6]	A	G	5.937e^-5	0.546	INTERGENIC
3R	5303855	3R_5303855_SNP [dm3] 3R_9478133_SNP [dm6]	T	C	6.075e^-5	0.546	INTRON CG16779
3L	4109613	3L_4109613_SNP [dm3] 3L_4109613_SNP [dm6]	A	G	6.103e^-5	0.546	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11465793	2L_11465793_SNP [dm3] 2L_11465793_SNP [dm6]	A	G	6.123e^-5	0.546	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11471977	2L_11471977_SNP [dm3] 2L_11471977_SNP [dm6]	G	T	6.140e^-5	0.546	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7384365	2R_7384365_DEL [dm3] 2R_11496860_DEL [dm6]	AA	A	6.180e^-5	0.546	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12005150	3L_12005150_SNP [dm3] 3L_12012050_SNP [dm6]	G	C	6.182e^-5	0.546	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9960003	2L_9960003_SNP [dm3] 2L_9960003_SNP [dm6]	T	A	6.228e^-5	0.546	UTR_3_PRIME CG5850 & 1 other DOWNSTREAM CG4658 & 1 other EXON CR44872
X	18446556	X_18446556_SNP [dm3] X_18552523_SNP [dm6]	G	C	6.228e^-5	0.546	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	6.246e^-5	0.546	INTERGENIC
3L	10295616	3L_10295616_SNP [dm3] 3L_10302516_SNP [dm6]	C	A	6.255e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19712701	2R_19712701_SNP [dm3] 2R_23825178_SNP [dm6]	G	T	6.281e^-5	0.546	UPSTREAM CG4763 INTRON CG5549
3R	6567987	3R_6567987_SNP [dm3] 3R_10742265_SNP [dm6]	C	T	6.323e^-5	0.546	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6564639	3R_6564639_INS [dm3] 3R_10738917_INS [dm6]	T	TAT	6.334e^-5	0.546	INTRON TkR86C	TF binding site mE1_TFBS_cad
2L	11182503	2L_11182503_SNP [dm3] 2L_11182503_SNP [dm6]	A	G	6.343e^-5	0.546	INTRON Ca-beta
3R	10187237	3R_10187237_SNP [dm3] 3R_14361515_SNP [dm6]	A	G	6.373e^-5	0.546	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20034372	2L_20034372_SNP [dm3] 2L_20034372_SNP [dm6]	G	C	6.427e^-5	0.547	INTRON sNPF
2L	13482138	2L_13482138_SNP [dm3] 2L_13482138_SNP [dm6]	A	G	6.468e^-5	0.547	INTRON CG42784
X	5832819	X_5832819_SNP [dm3] X_5938786_SNP [dm6]	T	C	6.532e^-5	0.547	SYNONYMOUS_CODING CG3726	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	16039960	X_16039960_SNP [dm3] X_16145927_SNP [dm6]	T	G	6.532e^-5	0.547	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3R	6564637	3R_6564637_SNP [dm3] 3R_10738915_SNP [dm6]	A	C	6.534e^-5	0.547	INTRON TkR86C	TF binding site mE1_TFBS_cad
2R	19712753	2R_19712753_SNP [dm3] 2R_23825230_SNP [dm6]	C	T	6.569e^-5	0.548	UPSTREAM CG4763 INTRON CG5549
2R	18028892	2R_18028892_SNP [dm3] 2R_22141387_SNP [dm6]	G	A	6.700e^-5	0.551	DOWNSTREAM gom INTRON a
3L	2367491	3L_2367491_SNP [dm3] 3L_2367491_SNP [dm6]	T	A	6.716e^-5	0.551	DOWNSTREAM CG1317 INTERGENIC
3R	8503593	3R_8503593_SNP [dm3] 3R_12677871_SNP [dm6]	C	T	6.806e^-5	0.551	SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14582960	3L_14582960_SNP [dm3] 3L_14589860_SNP [dm6]	T	A	6.849e^-5	0.551	INTRON HGTX
3R	373485	3R_373485_SNP [dm3] 3R_4547763_SNP [dm6]	C	G	6.858e^-5	0.551	INTRON CG34357
2L	13486393	2L_13486393_SNP [dm3] 2L_13486393_SNP [dm6]	T	C	6.885e^-5	0.551	INTRON CG42784
2L	6495253	2L_6495253_SNP [dm3] 2L_6495253_SNP [dm6]	C	G	6.905e^-5	0.551	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2R	8876531	2R_8876531_SNP [dm3] 2R_12989026_SNP [dm6]	A	C	6.911e^-5	0.551	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	6.917e^-5	0.551	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7263083	2L_7263083_SNP [dm3] 2L_7263083_SNP [dm6]	A	T	6.961e^-5	0.551	INTRON Wnt4	TF binding site mE1_TFBS_cad
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	7.031e^-5	0.551	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	7.036e^-5	0.551	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12373177	X_12373177_SNP [dm3] X_12479144_SNP [dm6]	A	G	7.063e^-5	0.551	DOWNSTREAM CG42258 INTERGENIC
3L	7489554	3L_7489554_DEL [dm3] 3L_7496454_DEL [dm6]	GG	G	7.099e^-5	0.551	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3L	4356053	3L_4356053_SNP [dm3] 3L_4356053_SNP [dm6]	C	T	7.105e^-5	0.551	INTRON Cip4
3R	8384671	3R_8384671_SNP [dm3] 3R_12558949_SNP [dm6]	G	A	7.151e^-5	0.551	INTRON Octbeta2R
3L	5706094	3L_5706094_SNP [dm3] 3L_5712994_SNP [dm6]	G	A	7.211e^-5	0.551	UPSTREAM CG44521 INTRON sif
3L	2367484	3L_2367484_SNP [dm3] 3L_2367484_SNP [dm6]	C	T	7.224e^-5	0.551	DOWNSTREAM CG1317 INTERGENIC
X	19111214	X_19111214_SNP [dm3] X_19217181_SNP [dm6]	T	A	7.241e^-5	0.551	DOWNSTREAM Muc18B INTERGENIC
3L	9616451	3L_9616451_SNP [dm3] 3L_9623351_SNP [dm6]	C	T	7.253e^-5	0.551	SYNONYMOUS_CODING LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26006739	3R_26006739_SNP [dm3] 3R_30181017_SNP [dm6]	T	C	7.317e^-5	0.551	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	7.359e^-5	0.551	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	7.359e^-5	0.551	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	7.359e^-5	0.551	INTERGENIC
2R	13446981	2R_13446981_SNP [dm3] 2R_17559476_SNP [dm6]	T	A	7.378e^-5	0.551	INTRON Klp54D
2L	14785157	2L_14785157_SNP [dm3] 2L_14785157_SNP [dm6]	T	A	7.403e^-5	0.551	UPSTREAM CG18636 INTERGENIC
X	8681782	X_8681782_SNP [dm3] X_8787749_SNP [dm6]	T	C	7.435e^-5	0.551	SYNONYMOUS_CODING Lim1
2R	11794822	2R_11794822_SNP [dm3] 2R_15907317_SNP [dm6]	A	G	7.439e^-5	0.551	INTRON sli
3L	2915581	3L_2915581_SNP [dm3] 3L_2915581_SNP [dm6]	A	G	7.485e^-5	0.551	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15232346	2L_15232346_SNP [dm3] 2L_15232346_SNP [dm6]	G	A	7.527e^-5	0.551	INTRON ZnT35C	TF binding site mE1_TFBS_cad
3L	4356087	3L_4356087_SNP [dm3] 3L_4356087_SNP [dm6]	T	C	7.543e^-5	0.551	INTRON Cip4
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	7.570e^-5	0.551	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7319363	X_7319363_SNP [dm3] X_7425330_SNP [dm6]	A	T	7.574e^-5	0.551	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
X	16908524	X_16908524_SNP [dm3] X_17014491_SNP [dm6]	T	A	7.606e^-5	0.551	INTRON CG45002
X	8465162	X_8465162_SNP [dm3] X_8571129_SNP [dm6]	C	A	7.669e^-5	0.551	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
X	11041908	X_11041908_SNP [dm3] X_11147875_SNP [dm6]	C	A	7.672e^-5	0.551	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	15196310	3L_15196310_SNP [dm3] 3L_15203210_SNP [dm6]	G	A	7.740e^-5	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	7.784e^-5	0.555	INTRON CR44320
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	7.815e^-5	0.555	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3151207	3R_3151207_SNP [dm3] 3R_7325485_SNP [dm6]	T	A	7.911e^-5	0.559	UPSTREAM CG44335 DOWNSTREAM CR44336 INTERGENIC
2L	11441686	2L_11441686_SNP [dm3] 2L_11441686_SNP [dm6]	C	T	7.931e^-5	0.559	INTRON salm	TF binding site mE1_TFBS_inv
2L	494691	2L_494691_SNP [dm3] 2L_494691_SNP [dm6]	A	T	8.086e^-5	0.565	INTRON ush
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	8.217e^-5	0.565	INTRON CG42260
X	1263681	X_1263681_SNP [dm3] X_1369648_SNP [dm6]	T	C	8.225e^-5	0.565	SYNONYMOUS_CODING CG14770 UPSTREAM ssx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sbb
3L	7455769	3L_7455769_SNP [dm3] 3L_7462669_SNP [dm6]	A	C	8.228e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4356090	3L_4356090_SNP [dm3] 3L_4356090_SNP [dm6]	G	A	8.289e^-5	0.565	INTRON Cip4
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	8.293e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6510730	3R_6510730_SNP [dm3] 3R_10685008_SNP [dm6]	C	A	8.303e^-5	0.565	DOWNSTREAM CR44230 INTERGENIC
3L	7489527	3L_7489527_SNP [dm3] 3L_7496427_SNP [dm6]	C	T	8.325e^-5	0.565	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
X	1279150	X_1279150_SNP [dm3] X_1385117_SNP [dm6]	G	C	8.343e^-5	0.565	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo
3R	21022647	3R_21022647_SNP [dm3] 3R_25196925_SNP [dm6]	A	G	8.375e^-5	0.565	DOWNSTREAM CG13653 & 1 other INTERGENIC
2L	14783090	2L_14783090_SNP [dm3] 2L_14783090_SNP [dm6]	G	T	8.481e^-5	0.565	DOWNSTREAM CG18636 EXON CR15280
X	10629648	X_10629648_SNP [dm3] X_10735615_SNP [dm6]	G	A	8.499e^-5	0.565	INTRON CG32676
3L	13188178	3L_13188178_SNP [dm3] 3L_13195078_SNP [dm6]	G	T	8.507e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7140309	3R_7140309_SNP [dm3] 3R_11314587_SNP [dm6]	A	T	8.544e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5768800	3R_5768800_SNP [dm3] 3R_9943078_SNP [dm6]	T	G	8.544e^-5	0.565	INTRON Glut4EF
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	8.545e^-5	0.565	INTRON Octbeta3R
X	8635052	X_8635052_DEL [dm3] X_8741019_DEL [dm6]	TTGTGTGCAATTTT...	T	8.564e^-5	0.565	INTERGENIC
2L	11785157	2L_11785157_SNP [dm3] 2L_11785157_SNP [dm6]	A	G	8.575e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11444230	2L_11444230_SNP [dm3] 2L_11444230_SNP [dm6]	C	T	8.607e^-5	0.565	INTRON salm	TF binding site BDTNP1_TFBS_dl
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	8.613e^-5	0.565	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	2941465	2L_2941465_SNP [dm3] 2L_2941465_SNP [dm6]	C	T	8.671e^-5	0.565	INTRON lilli	TF binding site mE1_TFBS_inv
3L	5707765	3L_5707765_SNP [dm3] 3L_5714665_SNP [dm6]	C	T	8.674e^-5	0.565	DOWNSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
3L	12010094	3L_12010094_SNP [dm3] 3L_12016994_SNP [dm6]	A	G	8.901e^-5	0.578	INTRON rols
2L	11196295	2L_11196295_SNP [dm3] 2L_11196295_SNP [dm6]	C	T	8.944e^-5	0.578	INTRON Ca-beta
3L	1821680	3L_1821680_SNP [dm3] 3L_1821680_SNP [dm6]	T	A	8.971e^-5	0.578	INTRON GV1
3L	9328733	3L_9328733_SNP [dm3] 3L_9335633_SNP [dm6]	C	T	9.021e^-5	0.579	UPSTREAM PGRP-LA INTRON PGRP-LA
X	20055370	X_20055370_SNP [dm3] X_20161337_SNP [dm6]	A	T	9.041e^-5	0.579	NON_SYNONYMOUS_CODING Phf7	TF binding site mE1_TFBS_chinmo
2L	7292548	2L_7292548_SNP [dm3] 2L_7292548_SNP [dm6]	C	T	9.115e^-5	0.58	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21127426	2L_21127426_SNP [dm3] 2L_21127426_SNP [dm6]	T	A	9.135e^-5	0.58	INTRON Nhe2
X	11227495	X_11227495_SNP [dm3] X_11333462_SNP [dm6]	C	T	9.202e^-5	0.58	SYNONYMOUS_CODING CG1657 DOWNSTREAM Kap3	TF binding site mE1_TFBS_cad
2L	14782756	2L_14782756_SNP [dm3] 2L_14782756_SNP [dm6]	A	G	9.217e^-5	0.58	DOWNSTREAM CG18636 INTRON CR15280
3R	7140335	3R_7140335_SNP [dm3] 3R_11314613_SNP [dm6]	T	C	9.229e^-5	0.58	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25440367	3R_25440367_DEL [dm3] 3R_29614645_DEL [dm6]	CG	C	9.238e^-5	0.58	INTRON alph
2R	10947049	2R_10947049_SNP [dm3] 2R_15059544_SNP [dm6]	G	C	9.306e^-5	0.582	INTERGENIC
3R	26393063	3R_26393063_SNP [dm3] 3R_30567341_SNP [dm6]	G	A	9.372e^-5	0.582	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3548425	3L_3548425_SNP [dm3] 3L_3548425_SNP [dm6]	A	G	9.403e^-5	0.582	INTRON Eip63E
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	9.465e^-5	0.582	INTRON timeout & 2 others
3L	4109655	3L_4109655_SNP [dm3] 3L_4109655_SNP [dm6]	G	T	9.522e^-5	0.582	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3222605	3R_3222605_SNP [dm3] 3R_7396883_SNP [dm6]	G	A	9.544e^-5	0.582	INTERGENIC
3R	15040660	3R_15040660_SNP [dm3] 3R_19214938_SNP [dm6]	T	G	9.558e^-5	0.582	DOWNSTREAM vib INTRON cry
X	18350724	X_18350724_SNP [dm3] X_18456691_SNP [dm6]	A	G	9.584e^-5	0.582	INTRON CG32547
3R	6572510	3R_6572510_SNP [dm3] 3R_10746788_SNP [dm6]	C	T	9.586e^-5	0.582	INTRON TkR86C
2L	495029	2L_495029_SNP [dm3] 2L_495029_SNP [dm6]	T	A	9.588e^-5	0.582	INTRON ush
X	20512664	X_20512664_INS [dm3] X_20641637_INS [dm6]	C	CCATTAATTC	9.665e^-5	0.585	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	15040656	3R_15040656_SNP [dm3] 3R_19214934_SNP [dm6]	C	A	9.727e^-5	0.587	DOWNSTREAM vib INTRON cry
3L	16330519	3L_16330519_SNP [dm3] 3L_16337419_SNP [dm6]	T	A	9.805e^-5	0.589	INTERGENIC
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	9.867e^-5	0.589	INTRON timeout & 2 others
X	18285011	X_18285011_SNP [dm3] X_18390978_SNP [dm6]	C	T	9.887e^-5	0.589	DOWNSTREAM Tsf1 INTRON CG32549	TF binding site mE1_TFBS_chinmo
3L	4607061	3L_4607061_DEL [dm3] 3L_4607061_DEL [dm6]	GCCTG	G	9.902e^-5	0.589	INTRON Src64B	TF binding site mE1_TFBS_HSA
3R	22299979	3R_22299979_SNP [dm3] 3R_26474257_SNP [dm6]	C	A	9.920e^-5	0.589	SYNONYMOUS_CODING plum
3R	8384677	3R_8384677_SNP [dm3] 3R_12558955_SNP [dm6]	A	T	9.955e^-5	0.589	INTRON Octbeta2R
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	9.987e^-5	0.589	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8707874	3R_8707874_SNP [dm3] 3R_12882152_SNP [dm6]	T	C	1.006e^-4	0.591	INTERGENIC
3R	8538978	3R_8538978_SNP [dm3] 3R_12713256_SNP [dm6]	T	C	1.012e^-4	0.592	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
X	5611607	X_5611607_SNP [dm3] X_5717574_SNP [dm6]	A	G	1.013e^-4	0.592	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11429853	2L_11429853_DEL [dm3] 2L_11429853_DEL [dm6]	CC	C	1.018e^-4	0.592	INTERGENIC
2L	11354609	2L_11354609_SNP [dm3] 2L_11354609_SNP [dm6]	G	A	1.019e^-4	0.592	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
X	16781673	X_16781673_SNP [dm3] X_16887640_SNP [dm6]	C	A	1.024e^-4	0.593	SYNONYMOUS_CODING CG4880	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	1.029e^-4	0.594	INTERGENIC
2L	2133488	2L_2133488_SNP [dm3] 2L_2133488_SNP [dm6]	G	T	1.033e^-4	0.594	INTRON GlyP
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	1.044e^-4	0.594	INTERGENIC
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	1.048e^-4	0.594	UPSTREAM PGRP-LA INTRON PGRP-LA
X	17100970	X_17100970_INS [dm3] X_17206937_INS [dm6]	A	AGTGCCA	1.054e^-4	0.594		TF binding site mE1_TFBS_chinmo
3R	21045840	3R_21045840_SNP [dm3] 3R_25220118_SNP [dm6]	G	A	1.057e^-4	0.594	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	1.057e^-4	0.594	INTERGENIC
3L	4356020	3L_4356020_SNP [dm3] 3L_4356020_SNP [dm6]	C	T	1.059e^-4	0.594	INTRON Cip4
2L	14784884	2L_14784884_SNP [dm3] 2L_14784884_SNP [dm6]	T	A	1.060e^-4	0.594	UPSTREAM CG18636 INTERGENIC
3L	11003444	3L_11003444_SNP [dm3] 3L_11010344_SNP [dm6]	T	C	1.063e^-4	0.594	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11426402	2L_11426402_SNP [dm3] 2L_11426402_SNP [dm6]	G	T	1.063e^-4	0.594	INTERGENIC
3L	11519950	3L_11519950_SNP [dm3] 3L_11526850_SNP [dm6]	T	A	1.064e^-4	0.594	INTRON Mob2
3L	16330542	3L_16330542_SNP [dm3] 3L_16337442_SNP [dm6]	G	A	1.072e^-4	0.596	INTERGENIC
2R	6495982	2R_6495982_INS [dm3] 2R_10608477_INS [dm6]	A	ACCCA	1.083e^-4	0.596	INTRON psq
3L	10143286	3L_10143286_SNP [dm3] 3L_10150186_SNP [dm6]	A	G	1.084e^-4	0.596	INTRON dpr10
2L	16011241	2L_16011241_SNP [dm3] 2L_16011241_SNP [dm6]	T	A	1.085e^-4	0.596	INTRON beat-Ic
2R	12104729	2R_12104729_SNP [dm3] 2R_16217224_SNP [dm6]	G	C	1.086e^-4	0.596	INTRON mrj
2L	13483974	2L_13483974_SNP [dm3] 2L_13483974_SNP [dm6]	T	C	1.088e^-4	0.596	UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_cad
X	16882497	X_16882497_SNP [dm3] X_16988464_SNP [dm6]	C	A	1.090e^-4	0.596	INTRON CG45002
3R	6539192	3R_6539192_SNP [dm3] 3R_10713470_SNP [dm6]	C	T	1.098e^-4	0.597	INTERGENIC
3R	15040651	3R_15040651_SNP [dm3] 3R_19214929_SNP [dm6]	T	C	1.099e^-4	0.597	DOWNSTREAM vib INTRON cry
2L	16257314	2L_16257314_SNP [dm3] 2L_16257314_SNP [dm6]	G	C	1.105e^-4	0.598	UTR_5_PRIME PRL-1 UPSTREAM EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
2L	8069073	2L_8069073_SNP [dm3] 2L_8069073_SNP [dm6]	G	T	1.112e^-4	0.598	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_sens
3L	16330526	3L_16330526_INS [dm3] 3L_16337426_INS [dm6]	A	AAG	1.119e^-4	0.598	INTERGENIC
2L	11362462	2L_11362462_SNP [dm3] 2L_11362462_SNP [dm6]	A	C	1.126e^-4	0.598	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	1.131e^-4	0.598	INTERGENIC
3L	20000931	3L_20000931_SNP [dm3] 3L_20007831_SNP [dm6]	G	T	1.131e^-4	0.598	INTRON kug	TF binding site mE1_TFBS_zfh1
2L	13485801	2L_13485801_SNP [dm3] 2L_13485801_SNP [dm6]	A	G	1.135e^-4	0.598	INTRON CG42784
3L	3031252	3L_3031252_SNP [dm3] 3L_3031252_SNP [dm6]	T	A	1.136e^-4	0.598	INTERGENIC
2R	17086797	2R_17086797_SNP [dm3] 2R_21199292_SNP [dm6]	C	T	1.137e^-4	0.598	UTR_3_PRIME Lapsyn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	21354178	X_21354178_SNP [dm3] X_21483151_SNP [dm6]	A	G	1.140e^-4	0.598	EXON CR45511	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1821670	3L_1821670_SNP [dm3] 3L_1821670_SNP [dm6]	C	T	1.142e^-4	0.598	INTRON GV1
3R	27151784	3R_27151784_SNP [dm3] 3R_31326062_SNP [dm6]	A	G	1.149e^-4	0.598	INTRON CG34347
3L	420633	3L_420633_SNP [dm3] 3L_420633_SNP [dm6]	T	C	1.156e^-4	0.598	INTERGENIC
X	16039920	X_16039920_SNP [dm3] X_16145887_SNP [dm6]	A	G	1.157e^-4	0.598	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2R	12781780	2R_12781780_SNP [dm3] 2R_16894275_SNP [dm6]	T	A	1.163e^-4	0.598	START_GAINED CG8910 UTR_5_PRIME CG8910 DOWNSTREAM mir-990
3L	9998968	3L_9998968_SNP [dm3] 3L_10005868_SNP [dm6]	C	A	1.163e^-4	0.598	INTRON dpr6
2L	2112105	2L_2112105_SNP [dm3] 2L_2112105_SNP [dm6]	G	T	1.164e^-4	0.598	INTERGENIC
X	17107416	X_17107416_SNP [dm3] X_17213383_SNP [dm6]	T	C	1.169e^-4	0.598	SYNONYMOUS_CODING CG18258
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	1.176e^-4	0.598	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14787268	2L_14787268_SNP [dm3] 2L_14787268_SNP [dm6]	A	G	1.179e^-4	0.598	INTERGENIC
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	1.181e^-4	0.598	SYNONYMOUS_CODING NaPi-T
3R	6523060	3R_6523060_SNP [dm3] 3R_10697338_SNP [dm6]	G	A	1.185e^-4	0.598	INTRON CG14683 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1590583	3R_1590583_SNP [dm3] 3R_5764861_SNP [dm6]	G	A	1.186e^-4	0.598	INTRON CG2082
3L	7489481	3L_7489481_DEL [dm3] 3L_7496381_DEL [dm6]	TT	T	1.192e^-4	0.598	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	15854798	2L_15854798_SNP [dm3] 2L_15854798_SNP [dm6]	C	T	1.192e^-4	0.598	DOWNSTREAM CG13243 INTRON Tektin-A
3L	12050930	3L_12050930_DEL [dm3] 3L_12057830_DEL [dm6]	GA	G	1.194e^-4	0.598	INTRON rols
2L	14780162	2L_14780162_SNP [dm3] 2L_14780162_SNP [dm6]	C	T	1.206e^-4	0.598	INTERGENIC
3L	15532560	3L_15532560_SNP [dm3] 3L_15539460_SNP [dm6]	G	A	1.212e^-4	0.598	INTRON CrebA
X	18365523	X_18365523_SNP [dm3] X_18471490_SNP [dm6]	A	T	1.215e^-4	0.598	INTRON CG32547
3R	1604065	3R_1604065_SNP [dm3] 3R_5778343_SNP [dm6]	G	T	1.216e^-4	0.598	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 transposable element FlyBase
3R	15040648	3R_15040648_SNP [dm3] 3R_19214926_SNP [dm6]	C	T	1.216e^-4	0.598	DOWNSTREAM vib INTRON cry
3L	7489556	3L_7489556_INS [dm3] 3L_7496456_INS [dm6]	T	TCAAA	1.217e^-4	0.598	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	2961271	2L_2961271_SNP [dm3] 2L_2961271_SNP [dm6]	A	C	1.217e^-4	0.598	NON_SYNONYMOUS_CODING Rbp9
3R	8384670	3R_8384670_SNP [dm3] 3R_12558948_SNP [dm6]	T	A	1.218e^-4	0.598	INTRON Octbeta2R
2L	11415119	2L_11415119_SNP [dm3] 2L_11415119_SNP [dm6]	G	C	1.218e^-4	0.598	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14236439	2L_14236439_SNP [dm3] 2L_14236439_SNP [dm6]	G	T	1.225e^-4	0.598	DOWNSTREAM CR44728 INTERGENIC
2R	18531134	2R_18531134_SNP [dm3] 2R_22643629_SNP [dm6]	A	C	1.238e^-4	0.598	NON_SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
2L	11926150	2L_11926150_SNP [dm3] 2L_11926150_SNP [dm6]	T	A	1.240e^-4	0.598	INTRON Pde1c
3L	1821672	3L_1821672_SNP [dm3] 3L_1821672_SNP [dm6]	A	G	1.248e^-4	0.598	INTRON GV1
3L	420417	3L_420417_SNP [dm3] 3L_420417_SNP [dm6]	C	T	1.253e^-4	0.598	INTERGENIC
2R	7384360	2R_7384360_SNP [dm3] 2R_11496855_SNP [dm6]	T	G	1.256e^-4	0.598	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7384361	2R_7384361_SNP [dm3] 2R_11496856_SNP [dm6]	T	C	1.256e^-4	0.598	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2708063	2L_2708063_SNP [dm3] 2L_2708063_SNP [dm6]	C	T	1.263e^-4	0.598	INTRON CG31690
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	1.264e^-4	0.598	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13826429	3R_13826429_SNP [dm3] 3R_18000707_SNP [dm6]	C	T	1.274e^-4	0.598	INTRON cpo
X	14872580	X_14872580_INS [dm3] X_14978547_INS [dm6]	T	TT	1.275e^-4	0.598	INTRON eag
2L	14780110	2L_14780110_SNP [dm3] 2L_14780110_SNP [dm6]	C	T	1.276e^-4	0.598	INTERGENIC
3L	6292465	3L_6292465_SNP [dm3] 3L_6299365_SNP [dm6]	G	T	1.279e^-4	0.598	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19278202	2L_19278202_SNP [dm3] 2L_19278202_SNP [dm6]	C	T	1.281e^-4	0.598	INTERGENIC
3L	12005096	3L_12005096_SNP [dm3] 3L_12011996_SNP [dm6]	C	T	1.287e^-4	0.598	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	1.290e^-4	0.598	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27145772	3R_27145772_SNP [dm3] 3R_31320050_SNP [dm6]	T	A	1.296e^-4	0.598	INTRON CG34347
2R	10998545	2R_10998545_SNP [dm3] 2R_15111040_SNP [dm6]	C	G	1.298e^-4	0.598	INTERGENIC
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	1.298e^-4	0.598	INTERGENIC
X	12008094	X_12008094_SNP [dm3] X_12114061_SNP [dm6]	C	T	1.298e^-4	0.598	DOWNSTREAM CG2750 INTRON CR43960 & 1 other
3L	2365433	3L_2365433_SNP [dm3] 3L_2365433_SNP [dm6]	T	C	1.302e^-4	0.598	INTERGENIC
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	1.303e^-4	0.598	UTR_3_PRIME CG9970 INTRON Shab
3L	13176533	3L_13176533_SNP [dm3] 3L_13183433_SNP [dm6]	A	G	1.303e^-4	0.598	INTERGENIC
2L	11433432	2L_11433432_SNP [dm3] 2L_11433432_SNP [dm6]	G	A	1.304e^-4	0.598	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9059565	3R_9059565_SNP [dm3] 3R_13233843_SNP [dm6]	A	G	1.308e^-4	0.598	INTRON Ace
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	1.311e^-4	0.598	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
3L	9607091	3L_9607091_SNP [dm3] 3L_9613991_SNP [dm6]	C	A	1.320e^-4	0.598	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607107	3L_9607107_DEL [dm3] 3L_9614007_DEL [dm6]	TT	T	1.320e^-4	0.598	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	16139690	2R_16139690_SNP [dm3] 2R_20252185_SNP [dm6]	A	C	1.323e^-4	0.598	INTRON CG9864
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	1.323e^-4	0.598	INTERGENIC
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	1.324e^-4	0.598	INTRON Ref2
3L	4356065	3L_4356065_SNP [dm3] 3L_4356065_SNP [dm6]	C	T	1.328e^-4	0.598	INTRON Cip4
3L	14116606	3L_14116606_SNP [dm3] 3L_14123506_SNP [dm6]	A	G	1.328e^-4	0.598	INTRON Sox21b
3L	7608126	3L_7608126_SNP [dm3] 3L_7615026_SNP [dm6]	T	C	1.329e^-4	0.598	INTRON CG33275
3L	12004994	3L_12004994_SNP [dm3] 3L_12011894_SNP [dm6]	G	A	1.330e^-4	0.598	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20010571	2R_20010571_SNP [dm3] 2R_24123048_SNP [dm6]	G	A	1.336e^-4	0.598	UTR_3_PRIME CG3257 DOWNSTREAM CG43775 & 2 others	TF binding site mE1_TFBS_cad
3R	6523037	3R_6523037_SNP [dm3] 3R_10697315_SNP [dm6]	T	A	1.337e^-4	0.598	INTRON CG14683 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	1.337e^-4	0.598	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	1.337e^-4	0.598	INTERGENIC
3R	9059786	3R_9059786_SNP [dm3] 3R_13234064_SNP [dm6]	G	C	1.342e^-4	0.598	INTRON Ace
3R	22031411	3R_22031411_SNP [dm3] 3R_26205689_SNP [dm6]	G	C	1.344e^-4	0.598	INTRON CR44320
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	1.346e^-4	0.598	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	7399133	2L_7399133_SNP [dm3] 2L_7399133_SNP [dm6]	T	A	1.354e^-4	0.598	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14446914	3R_14446914_SNP [dm3] 3R_18621192_SNP [dm6]	C	A	1.355e^-4	0.598	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19430764	X_19430764_SNP [dm3] X_19536731_SNP [dm6]	C	A	1.371e^-4	0.598	INTRON CG32532
3L	2363618	3L_2363618_SNP [dm3] 3L_2363618_SNP [dm6]	T	A	1.375e^-4	0.598	DOWNSTREAM CG13801 INTERGENIC
2L	11426399	2L_11426399_DEL [dm3] 2L_11426399_DEL [dm6]	TT	T	1.379e^-4	0.598	INTERGENIC
2L	11471110	2L_11471110_SNP [dm3] 2L_11471110_SNP [dm6]	G	A	1.382e^-4	0.598	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27147622	3R_27147622_SNP [dm3] 3R_31321900_SNP [dm6]	G	A	1.387e^-4	0.598	INTRON CG34347
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	1.397e^-4	0.598	INTRON CG14395
2L	1147090	2L_1147090_SNP [dm3] 2L_1147090_SNP [dm6]	C	T	1.401e^-4	0.598	UTR_3_PRIME MFS3 UPSTREAM CG4749	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9607243	3L_9607243_SNP [dm3] 3L_9614143_SNP [dm6]	A	G	1.403e^-4	0.598	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9607256	3L_9607256_SNP [dm3] 3L_9614156_SNP [dm6]	G	T	1.403e^-4	0.598	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	7810180	3R_7810180_SNP [dm3] 3R_11984458_SNP [dm6]	C	T	1.409e^-4	0.598	SYNONYMOUS_CODING CG3397 DOWNSTREAM mfas	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9716329	3L_9716329_SNP [dm3] 3L_9723229_SNP [dm6]	A	G	1.411e^-4	0.598	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18381170	2L_18381170_SNP [dm3] 2L_18381170_SNP [dm6]	T	C	1.412e^-4	0.598	INTRON Fas3
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	1.412e^-4	0.598	INTERGENIC
2L	13840355	2L_13840355_SNP [dm3] 2L_13840355_SNP [dm6]	G	A	1.413e^-4	0.598	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3756352	3L_3756352_SNP [dm3] 3L_3756352_SNP [dm6]	G	C	1.416e^-4	0.598	INTRON CG32264	TF binding site mE1_TFBS_Trl
2L	11472116	2L_11472116_SNP [dm3] 2L_11472116_SNP [dm6]	A	G	1.416e^-4	0.598	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13176403	3L_13176403_SNP [dm3] 3L_13183303_SNP [dm6]	A	G	1.420e^-4	0.598	INTERGENIC
3R	17653786	3R_17653786_SNP [dm3] 3R_21828064_SNP [dm6]	C	T	1.420e^-4	0.598	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18531105	2R_18531105_SNP [dm3] 2R_22643600_SNP [dm6]	G	C	1.422e^-4	0.598	SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
X	16742505	X_16742505_SNP [dm3] X_16848472_SNP [dm6]	C	T	1.423e^-4	0.598	SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_chinmo
3R	12844916	3R_12844916_SNP [dm3] 3R_17019194_SNP [dm6]	C	G	1.424e^-4	0.598	UTR_3_PRIME AdSL INTRON Pxd
3L	5707753	3L_5707753_INS [dm3] 3L_5714653_INS [dm6]	G	GCCAAC	1.426e^-4	0.598	DOWNSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
2L	17031381	2L_17031381_SNP [dm3] 2L_17031381_SNP [dm6]	G	A	1.428e^-4	0.598	INTERGENIC
3R	10186956	3R_10186956_SNP [dm3] 3R_14361234_SNP [dm6]	T	A	1.431e^-4	0.598	UTR_5_PRIME CG31320 INTRON NK7.1
3R	22006730	3R_22006730_SNP [dm3] 3R_26181008_SNP [dm6]	C	A	1.432e^-4	0.598	INTRON CG31323
2L	2620859	2L_2620859_SNP [dm3] 2L_2620859_SNP [dm6]	C	G	1.438e^-4	0.598	DOWNSTREAM CG43403 INTERGENIC
X	8395250	X_8395250_SNP [dm3] X_8501217_SNP [dm6]	T	A	1.442e^-4	0.598	INTRON CG33181
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	1.444e^-4	0.598	INTERGENIC
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	1.450e^-4	0.598	INTERGENIC
2L	1024220	2L_1024220_SNP [dm3] 2L_1024220_SNP [dm6]	C	T	1.452e^-4	0.598	INTRON IA-2
2L	1024228	2L_1024228_SNP [dm3] 2L_1024228_SNP [dm6]	T	C	1.452e^-4	0.598	INTRON IA-2
2L	13284458	2L_13284458_SNP [dm3] 2L_13284458_SNP [dm6]	T	G	1.456e^-4	0.598	UTR_3_PRIME Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	1.457e^-4	0.598	INTRON timeout & 2 others
3R	15040634	3R_15040634_SNP [dm3] 3R_19214912_SNP [dm6]	A	G	1.465e^-4	0.6	DOWNSTREAM vib INTRON cry	TF binding site mE1_TFBS_cad
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	1.470e^-4	0.601	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3R	8744735	3R_8744735_SNP [dm3] 3R_12919013_SNP [dm6]	C	T	1.477e^-4	0.602	INTRON beat-Vb
2L	11463892	2L_11463892_SNP [dm3] 2L_11463892_SNP [dm6]	A	T	1.488e^-4	0.605	INTERGENIC
3R	8503729	3R_8503729_SNP [dm3] 3R_12678007_SNP [dm6]	G	A	1.494e^-4	0.605	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	7272949	3L_7272949_SNP [dm3] 3L_7279849_SNP [dm6]	G	T	1.495e^-4	0.605	INTRON unc-13-4A
3R	18842826	3R_18842826_SNP [dm3] 3R_23017104_SNP [dm6]	A	T	1.497e^-4	0.605	INTERGENIC
3R	13730274	3R_13730274_SNP [dm3] 3R_17904552_SNP [dm6]	A	G	1.503e^-4	0.605	INTRON Rim
3R	9052248	3R_9052248_SNP [dm3] 3R_13226526_SNP [dm6]	A	T	1.507e^-4	0.605	UTR_3_PRIME Ace INTRON Ace
3L	9607068	3L_9607068_SNP [dm3] 3L_9613968_SNP [dm6]	T	C	1.508e^-4	0.605	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	1.514e^-4	0.605	INTERGENIC
2L	11472146	2L_11472146_SNP [dm3] 2L_11472146_SNP [dm6]	A	G	1.516e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_cad
X	15217735	X_15217735_SNP [dm3] X_15323702_SNP [dm6]	A	G	1.520e^-4	0.605	SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16161351	2L_16161351_SNP [dm3] 2L_16161351_SNP [dm6]	T	C	1.524e^-4	0.605	INTERGENIC
X	19121397	X_19121397_SNP [dm3] X_19227364_SNP [dm6]	A	T	1.525e^-4	0.605	INTRON CG7884	TF binding site mE1_TFBS_HSA
2L	19267423	2L_19267423_SNP [dm3] 2L_19267423_SNP [dm6]	T	G	1.526e^-4	0.605	INTERGENIC
X	20888285	X_20888285_SNP [dm3] X_21017258_SNP [dm6]	A	G	1.528e^-4	0.605	INTERGENIC
3R	12189502	3R_12189502_SNP [dm3] 3R_16363780_SNP [dm6]	A	G	1.532e^-4	0.605	INTRON CG14880
2L	11710214	2L_11710214_SNP [dm3] 2L_11710214_SNP [dm6]	G	A	1.536e^-4	0.605	INTERGENIC
3L	650280	3L_650280_SNP [dm3] 3L_650280_SNP [dm6]	T	C	1.547e^-4	0.609	SYNONYMOUS_CODING Gale	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8489685	3L_8489685_SNP [dm3] 3L_8496585_SNP [dm6]	C	T	1.551e^-4	0.609	INTRON CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6858443	3R_6858443_SNP [dm3] 3R_11032721_SNP [dm6]	G	A	1.572e^-4	0.609	INTRON CG34114
3L	9067083	3L_9067083_SNP [dm3] 3L_9073983_SNP [dm6]	T	C	1.575e^-4	0.609	SYNONYMOUS_CODING CG4942 UPSTREAM Tequila	TF binding site mE1_TFBS_sens
3R	6523053	3R_6523053_SNP [dm3] 3R_10697331_SNP [dm6]	G	A	1.578e^-4	0.609	INTRON CG14683 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14985992	2R_14985992_SNP [dm3] 2R_19098487_SNP [dm6]	G	C	1.578e^-4	0.609	INTRON 5-HT1A
X	1266464	X_1266464_SNP [dm3] X_1372431_SNP [dm6]	T	C	1.581e^-4	0.609	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	1.583e^-4	0.609	INTRON lilli
X	18617364	X_18617364_SNP [dm3] X_18723331_SNP [dm6]	G	A	1.590e^-4	0.609	INTRON CCKLR-17D1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19111217	X_19111217_INS [dm3] X_19217184_INS [dm6]	T	TAGCCTGCCTAGCATGGCA...	1.592e^-4	0.609	DOWNSTREAM Muc18B INTERGENIC
X	6747608	X_6747608_SNP [dm3] X_6853575_SNP [dm6]	T	C	1.595e^-4	0.609	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	1.598e^-4	0.609	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16330524	3L_16330524_SNP [dm3] 3L_16337424_SNP [dm6]	A	T	1.598e^-4	0.609	INTERGENIC
3R	6574254	3R_6574254_SNP [dm3] 3R_10748532_SNP [dm6]	T	C	1.602e^-4	0.609	INTRON TkR86C
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	1.611e^-4	0.609	INTRON Cad87A
X	8465172	X_8465172_SNP [dm3] X_8571139_SNP [dm6]	C	T	1.612e^-4	0.609	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3L	1617164	3L_1617164_SNP [dm3] 3L_1617164_SNP [dm6]	T	C	1.616e^-4	0.609	NON_SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 DOWNSTREAM CG13926
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.617e^-4	0.609	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	7133756	3R_7133756_SNP [dm3] 3R_11308034_SNP [dm6]	G	T	1.617e^-4	0.609	INTERGENIC
2R	8288866	2R_8288866_SNP [dm3] 2R_12401361_SNP [dm6]	G	A	1.620e^-4	0.609	UPSTREAM Cpr49Ae INTERGENIC
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	1.626e^-4	0.609	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	1.627e^-4	0.609	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
3R	15102610	3R_15102610_SNP [dm3] 3R_19276888_SNP [dm6]	G	A	1.627e^-4	0.609	INTERGENIC
3L	5704346	3L_5704346_SNP [dm3] 3L_5711246_SNP [dm6]	G	A	1.628e^-4	0.609	INTRON sif
X	8552865	X_8552865_SNP [dm3] X_8658832_SNP [dm6]	T	A	1.629e^-4	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	10761446	3L_10761446_SNP [dm3] 3L_10768346_SNP [dm6]	C	T	1.631e^-4	0.609	INTERGENIC
2L	6618909	2L_6618909_SNP [dm3] 2L_6618909_SNP [dm6]	A	G	1.635e^-4	0.609	UPSTREAM CR44913 INTRON CG11320
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	1.637e^-4	0.609	INTERGENIC
2R	18531108	2R_18531108_SNP [dm3] 2R_22643603_SNP [dm6]	C	T	1.643e^-4	0.609	SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
2L	19278176	2L_19278176_SNP [dm3] 2L_19278176_SNP [dm6]	T	A	1.649e^-4	0.609	INTERGENIC
3L	18132049	3L_18132049_SNP [dm3] 3L_18138949_SNP [dm6]	A	C	1.650e^-4	0.609	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16161392	2L_16161392_SNP [dm3] 2L_16161392_SNP [dm6]	G	T	1.653e^-4	0.609	INTERGENIC
3L	3624238	3L_3624238_SNP [dm3] 3L_3624238_SNP [dm6]	A	T	1.653e^-4	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7122379	3L_7122379_SNP [dm3] 3L_7129279_SNP [dm6]	T	C	1.655e^-4	0.609	UTR_3_PRIME CG15829
3L	7434734	3L_7434734_SNP [dm3] 3L_7441634_SNP [dm6]	C	T	1.665e^-4	0.61	UPSTREAM sphinx2 INTRON CG42458
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	1.666e^-4	0.61	INTRON beat-Vc
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	1.671e^-4	0.611	INTRON timeout & 2 others
3R	20777435	3R_20777435_DEL [dm3] 3R_24951713_DEL [dm6]	CC	C	1.673e^-4	0.611	INTERGENIC
3L	10296939	3L_10296939_SNP [dm3] 3L_10303839_SNP [dm6]	C	G	1.678e^-4	0.611	INTERGENIC
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	1.690e^-4	0.612	UTR_5_PRIME CG11686 UPSTREAM Ace
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	1.692e^-4	0.612	INTRON NaPi-T
X	6879148	X_6879148_DEL [dm3] X_6985115_DEL [dm6]	TT	T	1.694e^-4	0.612	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	15203155	3R_15203155_SNP [dm3] 3R_19377433_SNP [dm6]	T	C	1.697e^-4	0.612	UPSTREAM CG31245 INTRON Ino80
3R	8384590	3R_8384590_SNP [dm3] 3R_12558868_SNP [dm6]	C	T	1.698e^-4	0.612	INTRON Octbeta2R
3R	22275373	3R_22275373_SNP [dm3] 3R_26449651_SNP [dm6]	A	T	1.703e^-4	0.613	SYNONYMOUS_CODING Hex-t1 DOWNSTREAM tx	TF binding site mE1_TFBS_sens
3L	10912799	3L_10912799_SNP [dm3] 3L_10919699_SNP [dm6]	A	G	1.707e^-4	0.613	INTERGENIC
2R	16639756	2R_16639756_SNP [dm3] 2R_20752251_SNP [dm6]	A	G	1.713e^-4	0.614	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
2L	9850440	2L_9850440_SNP [dm3] 2L_9850440_SNP [dm6]	A	G	1.725e^-4	0.616	INTRON nAChRalpha6
3R	6523048	3R_6523048_SNP [dm3] 3R_10697326_SNP [dm6]	T	A	1.728e^-4	0.616	INTRON CG14683 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6613771	X_6613771_SNP [dm3] X_6719738_SNP [dm6]	A	C	1.728e^-4	0.616	DOWNSTREAM CG3168 & 1 other INTERGENIC
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	1.733e^-4	0.616	INTRON Ca-beta
3R	17326605	3R_17326605_SNP [dm3] 3R_21500883_SNP [dm6]	T	A	1.735e^-4	0.616	INTRON C15
2L	19251795	2L_19251795_SNP [dm3] 2L_19251795_SNP [dm6]	G	T	1.738e^-4	0.616	INTERGENIC
2L	5410137	2L_5410137_SNP [dm3] 2L_5410137_SNP [dm6]	T	C	1.739e^-4	0.616	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16330525	3L_16330525_SNP [dm3] 3L_16337425_SNP [dm6]	T	A	1.743e^-4	0.616	INTERGENIC
3R	8494475	3R_8494475_SNP [dm3] 3R_12668753_SNP [dm6]	C	A	1.757e^-4	0.619	UTR_5_PRIME CG14395	TF binding site mE1_TFBS_chinmo
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	1.758e^-4	0.619	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11448546	2L_11448546_SNP [dm3] 2L_11448546_SNP [dm6]	C	A	1.768e^-4	0.621	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4010000	2L_4010000_SNP [dm3] 2L_4010000_SNP [dm6]	C	T	1.771e^-4	0.621	DOWNSTREAM CG43774 INTERGENIC
2L	10008514	2L_10008514_DEL [dm3] 2L_10008514_DEL [dm6]	TT	T	1.780e^-4	0.623	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3L	4356084	3L_4356084_SNP [dm3] 3L_4356084_SNP [dm6]	T	G	1.791e^-4	0.626	INTRON Cip4
3R	19282333	3R_19282333_SNP [dm3] 3R_23456611_SNP [dm6]	A	G	1.801e^-4	0.628	INTRON CG4374
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	1.822e^-4	0.633	DOWNSTREAM CG15483 INTERGENIC
3L	10298515	3L_10298515_SNP [dm3] 3L_10305415_SNP [dm6]	T	G	1.825e^-4	0.633	INTERGENIC
3R	9070252	3R_9070252_SNP [dm3] 3R_13244530_SNP [dm6]	G	A	1.829e^-4	0.633	INTRON Ace
2L	11362550	2L_11362550_SNP [dm3] 2L_11362550_SNP [dm6]	A	T	1.829e^-4	0.633	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	5328178	X_5328178_SNP [dm3] X_5434145_SNP [dm6]	G	A	1.840e^-4	0.633	INTRON CR44471
2R	8306381	2R_8306381_SNP [dm3] 2R_12418876_SNP [dm6]	T	G	1.844e^-4	0.633	DOWNSTREAM CG42782 & 2 others INTERGENIC
X	7991489	X_7991489_SNP [dm3] X_8097456_SNP [dm6]	C	T	1.844e^-4	0.633	SYNONYMOUS_CODING CG2258
3R	25131057	3R_25131057_SNP [dm3] 3R_29305335_SNP [dm6]	G	A	1.845e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	1.849e^-4	0.633	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12566756	2L_12566756_SNP [dm3] 2L_12566756_SNP [dm6]	A	G	1.850e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21140013	3L_21140013_SNP [dm3] 3L_21146913_SNP [dm6]	A	T	1.854e^-4	0.633	UPSTREAM Ac78C INTRON Ac78C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13297871	2R_13297871_SNP [dm3] 2R_17410366_SNP [dm6]	G	C	1.858e^-4	0.634	UPSTREAM CG30101 INTERGENIC
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	1.863e^-4	0.634	DOWNSTREAM primo-2 & 2 others INTRON CG31469
3L	8473365	3L_8473365_SNP [dm3] 3L_8480265_SNP [dm6]	G	T	1.865e^-4	0.634	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	26983513	3R_26983513_SNP [dm3] 3R_31157791_SNP [dm6]	A	C	1.871e^-4	0.635	DOWNSTREAM stops INTRON Gycbeta100B
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	1.879e^-4	0.636	INTERGENIC
2L	13437613	2L_13437613_SNP [dm3] 2L_13437613_SNP [dm6]	C	T	1.885e^-4	0.637	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	24602440	3R_24602440_SNP [dm3] 3R_28776718_SNP [dm6]	A	G	1.901e^-4	0.639	UPSTREAM CR44952 INTERGENIC
3L	4186351	3L_4186351_SNP [dm3] 3L_4186351_SNP [dm6]	C	A	1.906e^-4	0.639	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	20009025	2R_20009025_SNP [dm3] 2R_24121502_SNP [dm6]	G	T	1.907e^-4	0.639	INTRON CG3257	TF binding site mE1_TFBS_chinmo
2R	20009042	2R_20009042_SNP [dm3] 2R_24121519_SNP [dm6]	T	A	1.907e^-4	0.639	INTRON CG3257	TF binding site mE1_TFBS_chinmo
2L	13707344	2L_13707344_SNP [dm3] 2L_13707344_SNP [dm6]	G	A	1.908e^-4	0.639	UPSTREAM CG7311 INTRON CG31814
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	1.924e^-4	0.642	INTRON CG7367 & 1 other
3L	9802329	3L_9802329_SNP [dm3] 3L_9809229_SNP [dm6]	G	T	1.926e^-4	0.642	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16161356	2L_16161356_INS [dm3] 2L_16161356_INS [dm6]	A	ATTTGGTGGCTTA...	1.927e^-4	0.642	INTERGENIC
2L	19415830	2L_19415830_SNP [dm3] 2L_19415830_SNP [dm6]	T	C	1.934e^-4	0.642	INTRON Pax
2L	15854566	2L_15854566_SNP [dm3] 2L_15854566_SNP [dm6]	G	T	1.938e^-4	0.642	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
3R	3230414	3R_3230414_SNP [dm3] 3R_7404692_SNP [dm6]	G	A	1.938e^-4	0.642	INTERGENIC
X	16140193	X_16140193_SNP [dm3] X_16246160_SNP [dm6]	C	A	1.941e^-4	0.642	INTERGENIC
3R	6858484	3R_6858484_SNP [dm3] 3R_11032762_SNP [dm6]	G	A	1.952e^-4	0.643	INTRON CG34114
3R	6534281	3R_6534281_SNP [dm3] 3R_10708559_SNP [dm6]	G	A	1.952e^-4	0.643	UTR_3_PRIME CG31373 UPSTREAM CG31278	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12476329	3L_12476329_SNP [dm3] 3L_12483229_SNP [dm6]	C	T	1.953e^-4	0.643	INTRON CG10663 & 1 other
3R	763551	3R_763551_SNP [dm3] 3R_4937829_SNP [dm6]	C	T	1.960e^-4	0.643	SYNONYMOUS_CODING Cdep INTRON Cdep	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7319392	X_7319392_SNP [dm3] X_7425359_SNP [dm6]	T	C	1.961e^-4	0.643	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	9982702	2L_9982702_SNP [dm3] 2L_9982702_SNP [dm6]	C	A	1.964e^-4	0.643	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	10930509	2L_10930509_SNP [dm3] 2L_10930509_SNP [dm6]	A	G	1.977e^-4	0.645	INTRON dpr2
2L	11710229	2L_11710229_SNP [dm3] 2L_11710229_SNP [dm6]	A	C	1.979e^-4	0.645	INTERGENIC
3L	16330550	3L_16330550_SNP [dm3] 3L_16337450_SNP [dm6]	A	G	1.981e^-4	0.645	INTERGENIC
X	1266374	X_1266374_SNP [dm3] X_1372341_SNP [dm6]	G	C	1.997e^-4	0.648	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16330545	3L_16330545_SNP [dm3] 3L_16337445_SNP [dm6]	A	C	2.001e^-4	0.648	INTERGENIC
3R	13145347	3R_13145347_SNP [dm3] 3R_17319625_SNP [dm6]	A	G	2.005e^-4	0.648	DOWNSTREAM beat-IIa INTERGENIC
3R	1049648	3R_1049648_SNP [dm3] 3R_5223926_SNP [dm6]	A	C	2.009e^-4	0.648	UPSTREAM CG14664 & 1 other INTERGENIC
3L	6734976	3L_6734976_SNP [dm3] 3L_6741876_SNP [dm6]	T	G	2.010e^-4	0.648	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	2.012e^-4	0.648	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3114647	3R_3114647_SNP [dm3] 3R_7288925_SNP [dm6]	C	A	2.021e^-4	0.649	INTRON rn
X	7913233	X_7913233_SNP [dm3] X_8019200_SNP [dm6]	G	A	2.021e^-4	0.649	DOWNSTREAM CG15333 INTRON Tbh
3R	22585970	3R_22585970_SNP [dm3] 3R_26760248_SNP [dm6]	T	C	2.028e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8288873	2R_8288873_SNP [dm3] 2R_12401368_SNP [dm6]	T	C	2.032e^-4	0.649	UPSTREAM Cpr49Ae INTERGENIC
2L	14960390	2L_14960390_SNP [dm3] 2L_14960390_SNP [dm6]	C	T	2.035e^-4	0.649	INTRON CG42313
3L	9616479	3L_9616479_SNP [dm3] 3L_9623379_SNP [dm6]	C	T	2.039e^-4	0.649	SYNONYMOUS_CODING LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12373066	X_12373066_SNP [dm3] X_12479033_SNP [dm6]	G	A	2.054e^-4	0.649	DOWNSTREAM CG42258 INTERGENIC
X	8552866	X_8552866_DEL [dm3] X_8658833_DEL [dm6]	AAG	A	2.056e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	5657492	2L_5657492_DEL [dm3] 2L_5657492_DEL [dm6]	TAT	T	2.059e^-4	0.649	INTRON CG31646
3R	7633265	3R_7633265_INS [dm3] 3R_11807543_INS [dm6]	T	TA	2.059e^-4	0.649	UPSTREAM ClC-a INTRON ClC-a
3R	3167185	3R_3167185_SNP [dm3] 3R_7341463_SNP [dm6]	A	G	2.063e^-4	0.649	INTERGENIC
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	2.064e^-4	0.649	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14419620	X_14419620_SNP [dm3] X_14525587_SNP [dm6]	A	G	2.066e^-4	0.649	INTERGENIC
2R	18526690	2R_18526690_SNP [dm3] 2R_22639185_SNP [dm6]	C	T	2.068e^-4	0.649	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	16330538	3L_16330538_SNP [dm3] 3L_16337438_SNP [dm6]	G	C	2.070e^-4	0.649	INTERGENIC
X	8570824	X_8570824_SNP [dm3] X_8676791_SNP [dm6]	A	T	2.070e^-4	0.649	UPSTREAM CG12772 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
X	8392509	X_8392509_DEL [dm3] X_8498476_DEL [dm6]	ATT	A	2.074e^-4	0.65	INTRON CG33181
3R	3151155	3R_3151155_SNP [dm3] 3R_7325433_SNP [dm6]	G	A	2.085e^-4	0.652	UPSTREAM CG44335 INTERGENIC
3L	7434761	3L_7434761_SNP [dm3] 3L_7441661_SNP [dm6]	T	G	2.089e^-4	0.652	UPSTREAM sphinx2 INTRON CG42458
2R	12017714	2R_12017714_SNP [dm3] 2R_16130209_SNP [dm6]	T	A	2.096e^-4	0.653	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447279	2L_11447279_SNP [dm3] 2L_11447279_SNP [dm6]	C	T	2.100e^-4	0.653	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12119331	2L_12119331_SNP [dm3] 2L_12119331_SNP [dm6]	C	T	2.102e^-4	0.653	INTRON CG17211
2L	11470190	2L_11470190_SNP [dm3] 2L_11470190_SNP [dm6]	A	G	2.111e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13847587	2R_13847587_SNP [dm3] 2R_17960082_SNP [dm6]	C	T	2.112e^-4	0.654	INTERGENIC
2L	19253260	2L_19253260_SNP [dm3] 2L_19253260_SNP [dm6]	C	T	2.115e^-4	0.654	INTERGENIC
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	2.123e^-4	0.655	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
3L	19171927	3L_19171927_SNP [dm3] 3L_19178827_SNP [dm6]	T	G	2.126e^-4	0.655	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	2.146e^-4	0.66	INTRON H2.0
2R	468548	2R_468548_SNP [dm3] 2R_4581043_SNP [dm6]	C	T	2.154e^-4	0.661	INTERGENIC
2L	7175145	2L_7175145_SNP [dm3] 2L_7175145_SNP [dm6]	G	T	2.157e^-4	0.661	UPSTREAM CR44610 INTERGENIC
3R	8464121	3R_8464121_SNP [dm3] 3R_12638399_SNP [dm6]	G	T	2.163e^-4	0.662	UPSTREAM CG11608 DOWNSTREAM CG11600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	18923197	X_18923197_SNP [dm3] X_19029164_SNP [dm6]	G	A	2.178e^-4	0.665	DOWNSTREAM CG43759 INTERGENIC
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	2.179e^-4	0.665	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8503901	3R_8503901_SNP [dm3] 3R_12678179_SNP [dm6]	C	T	2.184e^-4	0.665	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	2.186e^-4	0.665	UTR_3_PRIME plum
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	2.195e^-4	0.665	INTRON mspo
2L	11472118	2L_11472118_SNP [dm3] 2L_11472118_SNP [dm6]	T	C	2.207e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11495893	2L_11495893_SNP [dm3] 2L_11495893_SNP [dm6]	G	A	2.215e^-4	0.665	DOWNSTREAM CG6488 INTERGENIC
3L	10912803	3L_10912803_SNP [dm3] 3L_10919703_SNP [dm6]	G	A	2.219e^-4	0.665	INTERGENIC
3L	14533913	3L_14533913_SNP [dm3] 3L_14540813_SNP [dm6]	C	T	2.219e^-4	0.665	DOWNSTREAM CG9238 & 1 other INTERGENIC
X	11343320	X_11343320_SNP [dm3] X_11449287_SNP [dm6]	T	C	2.220e^-4	0.665	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	2.226e^-4	0.665	SYNONYMOUS_CODING Best2
3L	4607071	3L_4607071_DEL [dm3] 3L_4607071_DEL [dm6]	GAGGTGG	G	2.229e^-4	0.665	INTRON Src64B	TF binding site mE1_TFBS_HSA
3L	7883956	3L_7883956_SNP [dm3] 3L_7890856_SNP [dm6]	T	C	2.231e^-4	0.665	INTRON CG32365
3R	24996775	3R_24996775_SNP [dm3] 3R_29171053_SNP [dm6]	C	T	2.240e^-4	0.665	SYNONYMOUS_CODING CG11898 DOWNSTREAM CG14509	TF binding site mE1_TFBS_kn
2L	11354474	2L_11354474_SNP [dm3] 2L_11354474_SNP [dm6]	A	G	2.240e^-4	0.665	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	14299301	X_14299301_INS [dm3] X_14405268_INS [dm6]	A	AGAA	2.245e^-4	0.665	INTRON dpr8
2R	10473364	2R_10473364_SNP [dm3] 2R_14585859_SNP [dm6]	C	T	2.246e^-4	0.665	UTR_3_PRIME ttv DOWNSTREAM ttv
3L	22592769	3L_22592769_SNP [dm3] 3L_22599669_SNP [dm6]	C	T	2.246e^-4	0.665	INTRON CG14459
X	6878358	X_6878358_SNP [dm3] X_6984325_SNP [dm6]	A	T	2.251e^-4	0.665	UTR_5_PRIME ogre INTRON ogre EXON CR44084	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3167412	3R_3167412_SNP [dm3] 3R_7341690_SNP [dm6]	A	G	2.254e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 transposable element FlyBase
2L	1024221	2L_1024221_SNP [dm3] 2L_1024221_SNP [dm6]	A	G	2.261e^-4	0.665	INTRON IA-2
2L	540215	2L_540215_SNP [dm3] 2L_540215_SNP [dm6]	G	A	2.270e^-4	0.665	UTR_3_PRIME ush DOWNSTREAM lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	2.275e^-4	0.665	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	21203507	3L_21203507_SNP [dm3] 3L_21210407_SNP [dm6]	T	A	2.277e^-4	0.665	UTR_5_PRIME CG10508 UPSTREAM CG10510
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	2.289e^-4	0.665	INTERGENIC
2L	14782757	2L_14782757_SNP [dm3] 2L_14782757_SNP [dm6]	A	T	2.289e^-4	0.665	DOWNSTREAM CG18636 INTRON CR15280
2R	12909983	2R_12909983_SNP [dm3] 2R_17022478_SNP [dm6]	G	T	2.289e^-4	0.665	SYNONYMOUS_CODING Ark	TF binding site mE1_TFBS_sens
3L	16330549	3L_16330549_SNP [dm3] 3L_16337449_SNP [dm6]	A	T	2.289e^-4	0.665	INTERGENIC
3L	5951239	3L_5951239_SNP [dm3] 3L_5958139_SNP [dm6]	C	G	2.296e^-4	0.665	INTERGENIC
X	16878979	X_16878979_SNP [dm3] X_16984946_SNP [dm6]	G	A	2.296e^-4	0.665	INTRON CG45002
3L	10002400	3L_10002400_SNP [dm3] 3L_10009300_SNP [dm6]	T	C	2.302e^-4	0.665	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
2L	9850452	2L_9850452_DEL [dm3] 2L_9850452_DEL [dm6]	ACCA	TGG	2.308e^-4	0.665	INTRON nAChRalpha6
2L	16236124	2L_16236124_SNP [dm3] 2L_16236124_SNP [dm6]	G	C	2.309e^-4	0.665	SYNONYMOUS_CODING CG42817
2L	11443838	2L_11443838_INS [dm3] 2L_11443838_INS [dm6]	T	AA	2.310e^-4	0.665	INTRON salm
3L	18111250	3L_18111250_SNP [dm3] 3L_18118150_SNP [dm6]	T	C	2.312e^-4	0.665	UTR_3_PRIME CG32195 INTRON CG7341
2L	11470204	2L_11470204_SNP [dm3] 2L_11470204_SNP [dm6]	A	T	2.312e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8994351	3R_8994351_SNP [dm3] 3R_13168629_SNP [dm6]	T	C	2.316e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6287105	3L_6287105_SNP [dm3] 3L_6294005_SNP [dm6]	A	T	2.316e^-4	0.665	INTERGENIC
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.319e^-4	0.665	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	19415851	2L_19415851_SNP [dm3] 2L_19415851_SNP [dm6]	C	G	2.320e^-4	0.665	INTRON Pax
X	8948154	X_8948154_DEL [dm3] X_9054121_DEL [dm6]	AAAA	A	2.321e^-4	0.665	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
X	6878207	X_6878207_SNP [dm3] X_6984174_SNP [dm6]	T	C	2.322e^-4	0.665	START_GAINED ogre UTR_5_PRIME ogre INTRON ogre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6877520	X_6877520_SNP [dm3] X_6983487_SNP [dm6]	A	G	2.325e^-4	0.665	UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5611586	X_5611586_SNP [dm3] X_5717553_SNP [dm6]	A	G	2.341e^-4	0.666	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8646044	3R_8646044_SNP [dm3] 3R_12820322_SNP [dm6]	C	A	2.348e^-4	0.666	INTERGENIC
2R	7459605	2R_7459605_SNP [dm3] 2R_11572100_SNP [dm6]	C	T	2.349e^-4	0.666	INTERGENIC
3R	3170682	3R_3170682_SNP [dm3] 3R_7344960_SNP [dm6]	A	G	2.351e^-4	0.666	UPSTREAM CG31496 INTERGENIC
X	2589366	X_2589366_SNP [dm3] X_2695333_SNP [dm6]	C	T	2.356e^-4	0.666	INTRON CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16874559	3L_16874559_SNP [dm3] 3L_16881459_SNP [dm6]	G	A	2.356e^-4	0.666	INTRON Lmpt
3R	9052172	3R_9052172_SNP [dm3] 3R_13226450_SNP [dm6]	T	C	2.360e^-4	0.666	UTR_3_PRIME Ace INTRON Ace
2L	14773789	2L_14773789_SNP [dm3] 2L_14773789_SNP [dm6]	A	G	2.360e^-4	0.666	DOWNSTREAM CG4650 INTERGENIC
X	1269878	X_1269878_SNP [dm3] X_1375845_SNP [dm6]	T	C	2.360e^-4	0.666	UTR_5_PRIME AMPKalpha DOWNSTREAM ssx INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17233764	X_17233764_SNP [dm3] X_17339731_SNP [dm6]	G	A	2.367e^-4	0.666	INTERGENIC
2L	13485426	2L_13485426_SNP [dm3] 2L_13485426_SNP [dm6]	T	A	2.371e^-4	0.666	INTRON CG42784
3L	7953042	3L_7953042_SNP [dm3] 3L_7959942_SNP [dm6]	A	T	2.373e^-4	0.666	INTERGENIC
2L	11470059	2L_11470059_SNP [dm3] 2L_11470059_SNP [dm6]	G	A	2.388e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	2.394e^-4	0.669	INTERGENIC
X	18285886	X_18285886_SNP [dm3] X_18391853_SNP [dm6]	G	A	2.401e^-4	0.669	SYNONYMOUS_CODING CG32549	TF binding site mE1_TFBS_chinmo
3L	12677746	3L_12677746_SNP [dm3] 3L_12684646_SNP [dm6]	A	C	2.404e^-4	0.669	INTERGENIC
3R	8868845	3R_8868845_SNP [dm3] 3R_13043123_SNP [dm6]	A	G	2.407e^-4	0.669	UPSTREAM snk INTRON CG11670
2L	10008502	2L_10008502_SNP [dm3] 2L_10008502_SNP [dm6]	A	C	2.408e^-4	0.669	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3R	6574923	3R_6574923_SNP [dm3] 3R_10749201_SNP [dm6]	G	T	2.418e^-4	0.669	INTRON TkR86C
X	21175114	X_21175114_SNP [dm3] X_21304087_SNP [dm6]	T	A	2.419e^-4	0.669	UPSTREAM tRNA:CR32525 DOWNSTREAM tRNA:CR32520 INTRON CG1718
X	18446528	X_18446528_SNP [dm3] X_18552495_SNP [dm6]	C	G	2.420e^-4	0.669	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7319419	X_7319419_DEL [dm3] X_7425386_DEL [dm6]	TG	T	2.432e^-4	0.669	UTR_3_PRIME CG32726 UPSTREAM CG15036
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	2.436e^-4	0.669	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
2L	9982713	2L_9982713_SNP [dm3] 2L_9982713_SNP [dm6]	A	C	2.438e^-4	0.669	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	12328065	2R_12328065_SNP [dm3] 2R_16440560_SNP [dm6]	C	A	2.439e^-4	0.669	INTERGENIC
X	21353156	X_21353156_SNP [dm3] X_21482129_SNP [dm6]	T	G	2.443e^-4	0.669	DOWNSTREAM CR45511 INTERGENIC
2R	13297869	2R_13297869_SNP [dm3] 2R_17410364_SNP [dm6]	T	G	2.443e^-4	0.669	UPSTREAM CG30101 INTERGENIC
2L	6194751	2L_6194751_SNP [dm3] 2L_6194751_SNP [dm6]	T	G	2.445e^-4	0.669	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3L	5097971	3L_5097971_SNP [dm3] 3L_5097971_SNP [dm6]	G	A	2.447e^-4	0.669	DOWNSTREAM CR34047 INTERGENIC
3R	3189678	3R_3189678_SNP [dm3] 3R_7363956_SNP [dm6]	G	T	2.448e^-4	0.669	UPSTREAM Mst84Dd DOWNSTREAM Mst84Dc INTERGENIC
2R	16639283	2R_16639283_SNP [dm3] 2R_20751778_SNP [dm6]	C	A	2.452e^-4	0.669	SYNONYMOUS_CODING CG34201 UPSTREAM CG34202	TF binding site mE1_TFBS_sens
3L	9995578	3L_9995578_DEL [dm3] 3L_10002478_DEL [dm6]	CA	C	2.458e^-4	0.67	INTRON dpr6
3R	3170534	3R_3170534_SNP [dm3] 3R_7344812_SNP [dm6]	G	A	2.466e^-4	0.67	UPSTREAM CG31496 INTERGENIC
X	18922818	X_18922818_SNP [dm3] X_19028785_SNP [dm6]	G	A	2.469e^-4	0.67	DOWNSTREAM CG43759 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16257298	2L_16257298_SNP [dm3] 2L_16257298_SNP [dm6]	T	C	2.473e^-4	0.67	UTR_5_PRIME PRL-1 UPSTREAM EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
2R	18110805	2R_18110805_SNP [dm3] 2R_22223300_SNP [dm6]	C	G	2.474e^-4	0.67	DOWNSTREAM Oatp58Dc INTRON Oatp58Db	TF binding site mE1_TFBS_sens
X	14872490	X_14872490_SNP [dm3] X_14978457_SNP [dm6]	A	G	2.477e^-4	0.67	INTRON eag
2L	14960462	2L_14960462_SNP [dm3] 2L_14960462_SNP [dm6]	A	G	2.483e^-4	0.671	INTRON CG42313
3R	10392368	3R_10392368_DEL [dm3] 3R_14566646_DEL [dm6]	ATCCGCACAA	A	2.486e^-4	0.671	UTR_3_PRIME CG31313 DOWNSTREAM CG31313 & 2 others	TF binding site mE1_TFBS_cad
3R	5640267	3R_5640267_SNP [dm3] 3R_9814545_SNP [dm6]	G	C	2.512e^-4	0.676	NON_SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534	TF binding site mE1_TFBS_sens
2R	7423433	2R_7423433_SNP [dm3] 2R_11535928_SNP [dm6]	A	C	2.513e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5749460	3R_5749460_SNP [dm3] 3R_9923738_SNP [dm6]	C	T	2.518e^-4	0.677	INTRON Glut4EF
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	2.527e^-4	0.677	INTERGENIC
3L	18829874	3L_18829874_SNP [dm3] 3L_18836774_SNP [dm6]	C	T	2.530e^-4	0.677	INTRON Indy	TF binding site mE1_TFBS_zfh1
X	21353622	X_21353622_SNP [dm3] X_21482595_SNP [dm6]	C	T	2.534e^-4	0.677	DOWNSTREAM CR45511 INTERGENIC
3R	19282286	3R_19282286_SNP [dm3] 3R_23456564_SNP [dm6]	T	C	2.534e^-4	0.677	INTRON CG4374
3R	8380743	3R_8380743_DEL [dm3] 3R_12555021_DEL [dm6]	TT	T	2.542e^-4	0.678	INTRON Octbeta2R
3L	18382720	3L_18382720_SNP [dm3] 3L_18389620_SNP [dm6]	A	T	2.547e^-4	0.679	INTERGENIC
3R	3221113	3R_3221113_SNP [dm3] 3R_7395391_SNP [dm6]	T	C	2.557e^-4	0.68	INTERGENIC
2L	11710227	2L_11710227_SNP [dm3] 2L_11710227_SNP [dm6]	A	C	2.566e^-4	0.681	INTERGENIC
X	8326104	X_8326104_DEL [dm3] X_8432071_DEL [dm6]	AA	A	2.567e^-4	0.681	UTR_3_PRIME Trf2
3R	22112089	3R_22112089_SNP [dm3] 3R_26286367_SNP [dm6]	G	T	2.572e^-4	0.681	INTERGENIC
2L	10271237	2L_10271237_SNP [dm3] 2L_10271237_SNP [dm6]	G	A	2.586e^-4	0.683	SYNONYMOUS_CODING Mulk DOWNSTREAM trk
2L	11320242	2L_11320242_SNP [dm3] 2L_11320242_SNP [dm6]	T	G	2.586e^-4	0.683	DOWNSTREAM CR44583 INTERGENIC
3R	4315830	3R_4315830_SNP [dm3] 3R_8490108_SNP [dm6]	T	C	2.588e^-4	0.683	INTERGENIC
2R	12328043	2R_12328043_SNP [dm3] 2R_16440538_SNP [dm6]	T	C	2.598e^-4	0.684	INTERGENIC
3L	9883879	3L_9883879_SNP [dm3] 3L_9890779_SNP [dm6]	A	C	2.607e^-4	0.684	INTRON CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4192646	2R_4192646_SNP [dm3] 2R_8305141_SNP [dm6]	G	A	2.608e^-4	0.684	DOWNSTREAM CR44447 INTERGENIC
2R	12526698	2R_12526698_DEL [dm3] 2R_16639193_DEL [dm6]	GAG	G	2.614e^-4	0.684	INTRON Alk
3R	13919890	3R_13919890_DEL [dm3] 3R_18094168_DEL [dm6]	AGGA	A	2.615e^-4	0.684	INTRON sr
X	1279607	X_1279607_SNP [dm3] X_1385574_SNP [dm6]	T	G	2.619e^-4	0.684	UPSTREAM CG32813 INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1592862	3R_1592862_SNP [dm3] 3R_5767140_SNP [dm6]	G	A	2.619e^-4	0.684	INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13730149	3R_13730149_SNP [dm3] 3R_17904427_SNP [dm6]	A	T	2.626e^-4	0.684	INTRON Rim
3R	6552967	3R_6552967_SNP [dm3] 3R_10727245_SNP [dm6]	T	G	2.627e^-4	0.684	INTERGENIC
3R	9062352	3R_9062352_SNP [dm3] 3R_13236630_SNP [dm6]	A	G	2.631e^-4	0.684	INTRON Ace
3L	6292460	3L_6292460_SNP [dm3] 3L_6299360_SNP [dm6]	C	T	2.643e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19070373	2L_19070373_SNP [dm3] 2L_19070373_SNP [dm6]	T	C	2.645e^-4	0.685	UPSTREAM CG10702 DOWNSTREAM CG17343 & 1 other INTERGENIC
3R	20819947	3R_20819947_SNP [dm3] 3R_24994225_SNP [dm6]	G	A	2.649e^-4	0.685	INTRON tnc	TF binding site mE1_TFBS_cad
3R	20819954	3R_20819954_SNP [dm3] 3R_24994232_SNP [dm6]	A	C	2.649e^-4	0.685	INTRON tnc	TF binding site mE1_TFBS_cad
X	1625862	X_1625862_SNP [dm3] X_1731829_SNP [dm6]	C	T	2.654e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	2.657e^-4	0.685	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6538760	3R_6538760_SNP [dm3] 3R_10713038_SNP [dm6]	T	G	2.659e^-4	0.685	INTERGENIC
X	5681225	X_5681225_DEL [dm3] X_5787192_DEL [dm6]	GCTCCCG	G	2.675e^-4	0.687	INTRON CG42699
2R	5221537	2R_5221537_SNP [dm3] 2R_9334032_SNP [dm6]	T	C	2.682e^-4	0.687	INTRON CG13954 & 1 other
2L	11470007	2L_11470007_SNP [dm3] 2L_11470007_SNP [dm6]	A	G	2.682e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13840190	2L_13840190_SNP [dm3] 2L_13840190_SNP [dm6]	G	A	2.684e^-4	0.687	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8578327	3R_8578327_SNP [dm3] 3R_12752605_SNP [dm6]	T	C	2.687e^-4	0.687	SYNONYMOUS_CODING beat-Vc
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	2.691e^-4	0.687	INTRON beat-Vc
2L	13486819	2L_13486819_SNP [dm3] 2L_13486819_SNP [dm6]	A	G	2.699e^-4	0.687	INTRON CG42784
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	2.703e^-4	0.687	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6581544	2R_6581544_SNP [dm3] 2R_10694039_SNP [dm6]	C	A	2.709e^-4	0.687	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	19419069	2L_19419069_SNP [dm3] 2L_19419069_SNP [dm6]	T	A	2.710e^-4	0.687	UPSTREAM lectin-37Db DOWNSTREAM Lectin-galC1 & 1 other INTRON Pax
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	2.716e^-4	0.687	INTERGENIC
3L	14147652	3L_14147652_INS [dm3] 3L_14154552_INS [dm6]	G	GG	2.719e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8580640	3R_8580640_SNP [dm3] 3R_12754918_SNP [dm6]	A	T	2.733e^-4	0.687	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20505574	X_20505574_SNP [dm3] X_20634547_SNP [dm6]	G	C	2.733e^-4	0.687	INTERGENIC
X	20505782	X_20505782_SNP [dm3] X_20634755_SNP [dm6]	T	A	2.733e^-4	0.687	INTERGENIC
X	20505865	X_20505865_SNP [dm3] X_20634838_SNP [dm6]	A	T	2.733e^-4	0.687	INTERGENIC
3L	16330591	3L_16330591_SNP [dm3] 3L_16337491_SNP [dm6]	A	G	2.736e^-4	0.687	INTERGENIC
3L	9616658	3L_9616658_DEL [dm3] 3L_9623558_DEL [dm6]	AGGATCCAA	A	2.741e^-4	0.687	UTR_3_PRIME LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_sens
3L	1597840	3L_1597840_SNP [dm3] 3L_1597840_SNP [dm6]	C	T	2.743e^-4	0.687	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	2.749e^-4	0.687	INTERGENIC
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	2.753e^-4	0.687	INTRON cu
3R	9017493	3R_9017493_DEL [dm3] 3R_13191771_DEL [dm6]	AAACTGCCGA	A	2.755e^-4	0.687		TF binding site BDTNP1_TFBS_twi
3L	15377875	3L_15377875_SNP [dm3] 3L_15384775_SNP [dm6]	T	G	2.760e^-4	0.687	INTERGENIC
X	8570756	X_8570756_SNP [dm3] X_8676723_SNP [dm6]	G	A	2.762e^-4	0.687	UPSTREAM CG12772 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	2.764e^-4	0.687	EXON CR44942	TF binding site BDTNP1_TFBS_twi
3R	6540219	3R_6540219_SNP [dm3] 3R_10714497_SNP [dm6]	T	A	2.768e^-4	0.687	UPSTREAM CG4073 INTERGENIC
X	2459338	X_2459338_SNP [dm3] X_2565305_SNP [dm6]	C	A	2.770e^-4	0.687	INTRON Pdfr
2L	10956364	2L_10956364_SNP [dm3] 2L_10956364_SNP [dm6]	T	C	2.772e^-4	0.687	INTRON dpr2
2L	11429947	2L_11429947_SNP [dm3] 2L_11429947_SNP [dm6]	T	A	2.772e^-4	0.687	INTERGENIC
2R	18009839	2R_18009839_SNP [dm3] 2R_22122334_SNP [dm6]	G	T	2.779e^-4	0.687	SPLICE_SITE_REGION Vrp1 UTR_5_PRIME Vrp1 UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9298492	3L_9298492_SNP [dm3] 3L_9305392_SNP [dm6]	G	A	2.780e^-4	0.687	INTERGENIC
3R	13797518	3R_13797518_SNP [dm3] 3R_17971796_SNP [dm6]	G	C	2.791e^-4	0.689	INTRON cpo
2L	12102713	2L_12102713_SNP [dm3] 2L_12102713_SNP [dm6]	G	C	2.795e^-4	0.689	SYNONYMOUS_CODING Patsas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	10187548	3R_10187548_SNP [dm3] 3R_14361826_SNP [dm6]	G	T	2.809e^-4	0.689	UPSTREAM CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13176689	3L_13176689_SNP [dm3] 3L_13183589_SNP [dm6]	T	C	2.810e^-4	0.689	INTERGENIC
2L	11470225	2L_11470225_SNP [dm3] 2L_11470225_SNP [dm6]	G	A	2.813e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14363475	3L_14363475_SNP [dm3] 3L_14370375_SNP [dm6]	A	G	2.815e^-4	0.689	UPSTREAM CG13481 INTERGENIC
3R	6523030	3R_6523030_INS [dm3] 3R_10697308_INS [dm6]	CTT	TAAA	2.817e^-4	0.689	INTRON CG14683 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18111244	3L_18111244_SNP [dm3] 3L_18118144_SNP [dm6]	A	G	2.819e^-4	0.689	UTR_3_PRIME CG32195 INTRON CG7341
2R	18466824	2R_18466824_SNP [dm3] 2R_22579319_SNP [dm6]	C	A	2.823e^-4	0.689	INTRON dnr1	TF binding site mE1_TFBS_chinmo
3R	9535738	3R_9535738_SNP [dm3] 3R_13710016_SNP [dm6]	T	A	2.831e^-4	0.689	UPSTREAM CG31469 DOWNSTREAM primo-2 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	2.843e^-4	0.689	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1629264	3L_1629264_SNP [dm3] 3L_1629264_SNP [dm6]	G	A	2.843e^-4	0.689	UTR_5_PRIME GC UPSTREAM CG13928	TF binding site mE1_TFBS_chinmo
3L	1937701	3L_1937701_DEL [dm3] 3L_1937701_DEL [dm6]	TGAGTAATCT	T	2.845e^-4	0.689	INTRON CG5687
3L	16330544	3L_16330544_SNP [dm3] 3L_16337444_SNP [dm6]	T	G	2.850e^-4	0.689	INTERGENIC
X	20887904	X_20887904_SNP [dm3] X_21016877_SNP [dm6]	T	C	2.854e^-4	0.689	INTERGENIC
3R	8538954	3R_8538954_SNP [dm3] 3R_12713232_SNP [dm6]	A	C	2.862e^-4	0.689	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
3L	11679537	3L_11679537_SNP [dm3] 3L_11686437_SNP [dm6]	G	A	2.863e^-4	0.689	INTRON Sug
3R	5306888	3R_5306888_SNP [dm3] 3R_9481166_SNP [dm6]	T	C	2.865e^-4	0.689	INTRON CG16779
2R	18526885	2R_18526885_SNP [dm3] 2R_22639380_SNP [dm6]	C	T	2.866e^-4	0.689	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	7030586	3L_7030586_SNP [dm3] 3L_7037486_SNP [dm6]	C	A	2.867e^-4	0.689	INTRON Mp
2L	12494614	2L_12494614_SNP [dm3] 2L_12494614_SNP [dm6]	C	A	2.870e^-4	0.689	INTRON bun
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	2.871e^-4	0.689	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2925223	2L_2925223_SNP [dm3] 2L_2925223_SNP [dm6]	G	C	2.880e^-4	0.689	INTRON lilli
2R	7067511	2R_7067511_SNP [dm3] 2R_11180006_SNP [dm6]	A	G	2.880e^-4	0.689	INTRON shn
2L	5439524	2L_5439524_SNP [dm3] 2L_5439524_SNP [dm6]	T	A	2.885e^-4	0.689	UPSTREAM CR31647 INTERGENIC
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	2.887e^-4	0.689	INTERGENIC
3L	9607218	3L_9607218_SNP [dm3] 3L_9614118_SNP [dm6]	A	T	2.887e^-4	0.689	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2785394	2L_2785394_SNP [dm3] 2L_2785394_SNP [dm6]	T	A	2.889e^-4	0.689	UTR_3_PRIME Syt1 INTRON Syt1
X	11041926	X_11041926_SNP [dm3] X_11147893_SNP [dm6]	C	G	2.903e^-4	0.689	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12168847	X_12168847_SNP [dm3] X_12274814_SNP [dm6]	T	G	2.904e^-4	0.689	NON_SYNONYMOUS_CODING CG45603 INTRON Ten-a
3R	11297604	3R_11297604_SNP [dm3] 3R_15471882_SNP [dm6]	C	T	2.904e^-4	0.689	INTRON AdamTS-A
2R	18037280	2R_18037280_SNP [dm3] 2R_22149775_SNP [dm6]	A	T	2.907e^-4	0.689	INTRON a
2R	7423409	2R_7423409_SNP [dm3] 2R_11535904_SNP [dm6]	A	G	2.927e^-4	0.691	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12475862	2R_12475862_SNP [dm3] 2R_16588357_SNP [dm6]	C	T	2.928e^-4	0.691	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7455749	3L_7455749_SNP [dm3] 3L_7462649_SNP [dm6]	C	A	2.929e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	2.933e^-4	0.691	INTERGENIC
2R	16641600	2R_16641600_SNP [dm3] 2R_20754095_SNP [dm6]	G	T	2.944e^-4	0.691	DOWNSTREAM CG34202 INTERGENIC
X	1624673	X_1624673_SNP [dm3] X_1730640_SNP [dm6]	A	T	2.945e^-4	0.691	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	18829780	3L_18829780_SNP [dm3] 3L_18836680_SNP [dm6]	A	T	2.952e^-4	0.691	INTRON Indy	TF binding site mE1_TFBS_zfh1
2R	15255597	2R_15255597_SNP [dm3] 2R_19368092_SNP [dm6]	G	A	2.955e^-4	0.691	SYNONYMOUS_CODING CG9416 DOWNSTREAM CG10051
2L	12106117	2L_12106117_SNP [dm3] 2L_12106117_SNP [dm6]	C	T	2.958e^-4	0.691	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9527469	3R_9527469_SNP [dm3] 3R_13701747_SNP [dm6]	C	T	2.959e^-4	0.691	SYNONYMOUS_CODING ninaB UPSTREAM f-cup	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7490232	3R_7490232_SNP [dm3] 3R_11664510_SNP [dm6]	T	C	2.960e^-4	0.691	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10125741	3L_10125741_SNP [dm3] 3L_10132641_SNP [dm6]	C	T	2.960e^-4	0.691	INTRON dpr6
2L	16161225	2L_16161225_SNP [dm3] 2L_16161225_SNP [dm6]	T	G	2.961e^-4	0.691	INTERGENIC
3L	4104706	3L_4104706_SNP [dm3] 3L_4104706_SNP [dm6]	A	C	2.967e^-4	0.691	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7144523	3L_7144523_SNP [dm3] 3L_7151423_SNP [dm6]	T	C	2.970e^-4	0.691	INTRON corn	TF binding site mE1_TFBS_HSA
3R	19282338	3R_19282338_SNP [dm3] 3R_23456616_SNP [dm6]	G	A	2.975e^-4	0.691	INTRON CG4374
3R	13119903	3R_13119903_SNP [dm3] 3R_17294181_SNP [dm6]	G	A	2.982e^-4	0.692	INTERGENIC
3L	18132167	3L_18132167_SNP [dm3] 3L_18139067_SNP [dm6]	C	G	2.989e^-4	0.692	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6666177	2R_6666177_INS [dm3] 2R_10778672_INS [dm6]	A	ACTATA	3.000e^-4	0.692	INTRON CG33144
2L	14788299	2L_14788299_SNP [dm3] 2L_14788299_SNP [dm6]	A	T	3.000e^-4	0.692	INTERGENIC
3L	12476301	3L_12476301_SNP [dm3] 3L_12483201_SNP [dm6]	T	C	3.012e^-4	0.692	INTRON CG10663 & 1 other
3R	3184706	3R_3184706_SNP [dm3] 3R_7358984_SNP [dm6]	C	T	3.020e^-4	0.692	INTERGENIC
X	18383309	X_18383309_SNP [dm3] X_18489276_SNP [dm6]	A	G	3.023e^-4	0.692	INTRON CG15046	TF binding site mE1_TFBS_chinmo
2L	11458720	2L_11458720_SNP [dm3] 2L_11458720_SNP [dm6]	G	C	3.026e^-4	0.692	INTERGENIC
2L	4009835	2L_4009835_SNP [dm3] 2L_4009835_SNP [dm6]	A	G	3.027e^-4	0.692	DOWNSTREAM CG43774 INTERGENIC
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	3.027e^-4	0.692	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15320704	2R_15320704_SNP [dm3] 2R_19433199_SNP [dm6]	A	C	3.032e^-4	0.692	NON_SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5736783	3R_5736783_SNP [dm3] 3R_9911061_SNP [dm6]	C	T	3.033e^-4	0.692	INTRON Glut4EF
3R	15104540	3R_15104540_SNP [dm3] 3R_19278818_SNP [dm6]	C	T	3.036e^-4	0.692	EXON CR44173
2L	12601072	2L_12601072_SNP [dm3] 2L_12601072_SNP [dm6]	C	T	3.037e^-4	0.692	INTRON nub	TF binding site mE1_TFBS_HSA
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	3.037e^-4	0.692	INTRON Octbeta3R
3L	16330665	3L_16330665_SNP [dm3] 3L_16337565_SNP [dm6]	A	T	3.039e^-4	0.692	INTERGENIC
2R	12328120	2R_12328120_SNP [dm3] 2R_16440615_SNP [dm6]	A	G	3.043e^-4	0.692	INTERGENIC
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	3.046e^-4	0.692	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
X	21353374	X_21353374_SNP [dm3] X_21482347_SNP [dm6]	A	G	3.058e^-4	0.694	DOWNSTREAM CR45511 INTERGENIC
2R	12328276	2R_12328276_SNP [dm3] 2R_16440771_SNP [dm6]	G	A	3.062e^-4	0.694	INTERGENIC
3R	11108716	3R_11108716_SNP [dm3] 3R_15282994_SNP [dm6]	T	C	3.066e^-4	0.694	INTRON Tm1
3L	2828744	3L_2828744_SNP [dm3] 3L_2828744_SNP [dm6]	G	T	3.067e^-4	0.694	INTRON CG43444
2R	10572506	2R_10572506_SNP [dm3] 2R_14685001_SNP [dm6]	T	G	3.095e^-4	0.695	INTRON mspo
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	3.095e^-4	0.695	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19460975	2R_19460975_SNP [dm3] 2R_23573452_SNP [dm6]	T	C	3.100e^-4	0.695	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11442047	2L_11442047_SNP [dm3] 2L_11442047_SNP [dm6]	G	A	3.101e^-4	0.695	INTRON salm	TF binding site mE1_TFBS_inv
2R	18397818	2R_18397818_SNP [dm3] 2R_22510313_SNP [dm6]	G	A	3.103e^-4	0.695	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	12328262	2R_12328262_DEL [dm3] 2R_16440757_DEL [dm6]	AT	A	3.104e^-4	0.695	INTERGENIC
2R	18382525	2R_18382525_SNP [dm3] 2R_22495020_SNP [dm6]	C	T	3.106e^-4	0.695	UTR_3_PRIME px DOWNSTREAM CG4610
X	7915542	X_7915542_SNP [dm3] X_8021509_SNP [dm6]	C	G	3.107e^-4	0.695	UPSTREAM CG15333 INTRON Tbh
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	3.107e^-4	0.695	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	3.107e^-4	0.695	INTRON timeout & 2 others
3R	13660682	3R_13660682_SNP [dm3] 3R_17834960_SNP [dm6]	T	C	3.112e^-4	0.695	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	8265856	2R_8265856_SNP [dm3] 2R_12378351_SNP [dm6]	T	G	3.114e^-4	0.695	UPSTREAM Cpr49Ab DOWNSTREAM Cpr49Aa INTERGENIC	TF binding site mE1_TFBS_cad
3L	9067119	3L_9067119_SNP [dm3] 3L_9074019_SNP [dm6]	T	C	3.126e^-4	0.695	SYNONYMOUS_CODING CG4942 UPSTREAM Tequila	TF binding site mE1_TFBS_sens
2R	18407841	2R_18407841_SNP [dm3] 2R_22520336_SNP [dm6]	C	A	3.126e^-4	0.695	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13797439	3R_13797439_SNP [dm3] 3R_17971717_SNP [dm6]	A	T	3.127e^-4	0.695	INTRON cpo
2L	16042712	2L_16042712_DEL [dm3] 2L_16042712_DEL [dm6]	CA	C	3.136e^-4	0.696	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12735998	X_12735998_SNP [dm3] X_12841965_SNP [dm6]	G	T	3.140e^-4	0.696	INTRON Pde9
2L	2925784	2L_2925784_SNP [dm3] 2L_2925784_SNP [dm6]	G	T	3.149e^-4	0.696	INTRON lilli
2L	11466031	2L_11466031_SNP [dm3] 2L_11466031_SNP [dm6]	C	T	3.155e^-4	0.696	INTERGENIC
X	5828599	X_5828599_INS [dm3] X_5934566_INS [dm6]	A	AA	3.156e^-4	0.696	INTRON CG3726
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	3.165e^-4	0.696	INTRON CG30440
2L	10779979	2L_10779979_SNP [dm3] 2L_10779979_SNP [dm6]	C	T	3.166e^-4	0.696	INTRON CG31869
X	12255061	X_12255061_SNP [dm3] X_12361028_SNP [dm6]	G	A	3.168e^-4	0.696	INTERGENIC
2L	12254553	2L_12254553_SNP [dm3] 2L_12254553_SNP [dm6]	G	A	3.175e^-4	0.696	INTRON aret
3R	8132021	3R_8132021_SNP [dm3] 3R_12306299_SNP [dm6]	G	T	3.176e^-4	0.696	INTERGENIC
2L	11465803	2L_11465803_INS [dm3] 2L_11465803_INS [dm6]	A	AA	3.183e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	4095670	2L_4095670_SNP [dm3] 2L_4095670_SNP [dm6]	T	C	3.190e^-4	0.696	INTRON ed	TF binding site BDTNP1_TFBS_twi
2R	6665497	2R_6665497_SNP [dm3] 2R_10777992_SNP [dm6]	T	G	3.197e^-4	0.696	INTRON CG33144
3L	15793677	3L_15793677_SNP [dm3] 3L_15800577_SNP [dm6]	G	T	3.203e^-4	0.696	INTERGENIC
3L	3554363	3L_3554363_SNP [dm3] 3L_3554363_SNP [dm6]	T	G	3.204e^-4	0.696	INTRON Eip63E
3R	6540766	3R_6540766_SNP [dm3] 3R_10715044_SNP [dm6]	A	G	3.214e^-4	0.696	SYNONYMOUS_CODING CG4073
3L	8820145	3L_8820145_SNP [dm3] 3L_8827045_SNP [dm6]	A	T	3.224e^-4	0.696	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5305210	3R_5305210_SNP [dm3] 3R_9479488_SNP [dm6]	A	G	3.230e^-4	0.696	INTRON CG16779
2L	13486589	2L_13486589_SNP [dm3] 2L_13486589_SNP [dm6]	T	C	3.230e^-4	0.696	INTRON CG42784
3L	16330592	3L_16330592_SNP [dm3] 3L_16337492_SNP [dm6]	T	A	3.235e^-4	0.696	INTERGENIC
2L	5781202	2L_5781202_DEL [dm3] 2L_5781202_DEL [dm6]	TT	T	3.237e^-4	0.696	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	3.240e^-4	0.696	INTRON VGlut
2L	11354338	2L_11354338_SNP [dm3] 2L_11354338_SNP [dm6]	G	C	3.244e^-4	0.696	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	8768046	2L_8768046_SNP [dm3] 2L_8768046_SNP [dm6]	C	T	3.247e^-4	0.696	SYNONYMOUS_CODING CG9463
2L	12309708	2L_12309708_SNP [dm3] 2L_12309708_SNP [dm6]	T	C	3.247e^-4	0.696	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11435906	2L_11435906_SNP [dm3] 2L_11435906_SNP [dm6]	C	T	3.247e^-4	0.696	NON_SYNONYMOUS_CODING salm UTR_3_PRIME salm	TF binding site BDTNP1_TFBS_twi
3R	15108614	3R_15108614_SNP [dm3] 3R_19282892_SNP [dm6]	C	G	3.254e^-4	0.696	INTERGENIC
3R	18982765	3R_18982765_SNP [dm3] 3R_23157043_SNP [dm6]	A	G	3.254e^-4	0.696	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12328273	2R_12328273_SNP [dm3] 2R_16440768_SNP [dm6]	A	G	3.255e^-4	0.696	INTERGENIC
2R	12328274	2R_12328274_SNP [dm3] 2R_16440769_SNP [dm6]	T	A	3.255e^-4	0.696	INTERGENIC
X	4331172	X_4331172_SNP [dm3] X_4437139_SNP [dm6]	G	C	3.258e^-4	0.696	INTRON CR32773 & 1 other
X	7243478	X_7243478_SNP [dm3] X_7349445_SNP [dm6]	G	A	3.268e^-4	0.696	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14074422	X_14074422_SNP [dm3] X_14180389_SNP [dm6]	T	A	3.270e^-4	0.696	UPSTREAM CG11584 INTERGENIC
2L	14630873	2L_14630873_SNP [dm3] 2L_14630873_SNP [dm6]	C	T	3.271e^-4	0.696	INTRON osp
3L	14583074	3L_14583074_SNP [dm3] 3L_14589974_SNP [dm6]	A	T	3.276e^-4	0.696	INTRON HGTX
2R	12018340	2R_12018340_DEL [dm3] 2R_16130835_DEL [dm6]	GA	G	3.289e^-4	0.696	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10053176	2L_10053176_SNP [dm3] 2L_10053176_SNP [dm6]	C	T	3.290e^-4	0.696	UPSTREAM CR44875 DOWNSTREAM CR44874 INTERGENIC
3L	14512868	3L_14512868_SNP [dm3] 3L_14519768_SNP [dm6]	A	G	3.293e^-4	0.696	UTR_3_PRIME CG4613 DOWNSTREAM CG4613 INTRON bbg
2L	11466061	2L_11466061_SNP [dm3] 2L_11466061_SNP [dm6]	C	T	3.298e^-4	0.696	INTERGENIC
3R	5030075	3R_5030075_SNP [dm3] 3R_9204353_SNP [dm6]	A	G	3.299e^-4	0.696	INTRON pum
3L	18215522	3L_18215522_SNP [dm3] 3L_18222422_SNP [dm6]	T	A	3.301e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13728459	3R_13728459_SNP [dm3] 3R_17902737_SNP [dm6]	T	G	3.303e^-4	0.696	INTRON Rim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11788781	2L_11788781_SNP [dm3] 2L_11788781_SNP [dm6]	T	C	3.303e^-4	0.696	SPLICE_SITE_REGION CG14931 INTRON CG14931
2L	11426222	2L_11426222_SNP [dm3] 2L_11426222_SNP [dm6]	T	C	3.308e^-4	0.696	INTERGENIC
X	2589287	X_2589287_SNP [dm3] X_2695254_SNP [dm6]	T	G	3.309e^-4	0.696	INTRON CG2658
3L	18132040	3L_18132040_SNP [dm3] 3L_18138940_SNP [dm6]	T	G	3.320e^-4	0.696	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13295005	X_13295005_SNP [dm3] X_13400972_SNP [dm6]	A	G	3.321e^-4	0.696	UTR_3_PRIME CG1673 DOWNSTREAM CG12725	TF binding site mE1_TFBS_zfh1
X	5832837	X_5832837_SNP [dm3] X_5938804_SNP [dm6]	T	C	3.323e^-4	0.696	SYNONYMOUS_CODING CG3726	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	8395258	X_8395258_SNP [dm3] X_8501225_SNP [dm6]	C	T	3.326e^-4	0.696	INTRON CG33181
X	2589333	X_2589333_DEL [dm3] X_2695300_DEL [dm6]	CCAAAAC	C	3.335e^-4	0.696	INTRON CG2658
2L	11585467	2L_11585467_SNP [dm3] 2L_11585467_SNP [dm6]	T	C	3.340e^-4	0.696	UTR_3_PRIME Mst33A INTRON kek2
3L	7272916	3L_7272916_SNP [dm3] 3L_7279816_SNP [dm6]	G	A	3.343e^-4	0.696	INTRON unc-13-4A
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	3.345e^-4	0.696	DOWNSTREAM CG13991 INTERGENIC
2L	12117559	2L_12117559_SNP [dm3] 2L_12117559_SNP [dm6]	C	T	3.349e^-4	0.696	INTRON CG17211
2R	12327674	2R_12327674_SNP [dm3] 2R_16440169_SNP [dm6]	T	C	3.354e^-4	0.696	INTERGENIC
2R	16944046	2R_16944046_SNP [dm3] 2R_21056541_SNP [dm6]	T	A	3.357e^-4	0.696	UTR_5_PRIME shg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	9607596	3L_9607596_SNP [dm3] 3L_9614496_SNP [dm6]	T	C	3.357e^-4	0.696	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11465782	2L_11465782_SNP [dm3] 2L_11465782_SNP [dm6]	A	G	3.358e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	3185752	3R_3185752_SNP [dm3] 3R_7360030_SNP [dm6]	G	A	3.367e^-4	0.696	INTERGENIC
3R	20697082	3R_20697082_SNP [dm3] 3R_24871360_SNP [dm6]	T	A	3.368e^-4	0.696	UTR_3_PRIME CG3744 UPSTREAM CycB3 DOWNSTREAM CG3744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19623484	X_19623484_SNP [dm3] X_19729451_SNP [dm6]	A	G	3.370e^-4	0.696	UTR_3_PRIME CG12531
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	3.373e^-4	0.696	INTRON Actn	TF binding site BDTNP1_TFBS_dl
X	14979055	X_14979055_SNP [dm3] X_15085022_SNP [dm6]	G	A	3.375e^-4	0.696	UPSTREAM CG9065 DOWNSTREAM CG15027 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	5260325	X_5260325_SNP [dm3] X_5366292_SNP [dm6]	C	A	3.388e^-4	0.696	INTRON SK
3R	19282274	3R_19282274_SNP [dm3] 3R_23456552_SNP [dm6]	A	C	3.400e^-4	0.696	INTRON CG4374
2L	12100875	2L_12100875_SNP [dm3] 2L_12100875_SNP [dm6]	G	T	3.401e^-4	0.696	UTR_3_PRIME Patsas DOWNSTREAM Ced-12
3R	26575198	3R_26575198_SNP [dm3] 3R_30749476_SNP [dm6]	G	T	3.408e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4186580	3L_4186580_SNP [dm3] 3L_4186580_SNP [dm6]	C	T	3.409e^-4	0.696	SYNONYMOUS_CODING VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13492264	2L_13492264_SNP [dm3] 2L_13492264_SNP [dm6]	A	G	3.410e^-4	0.696	INTRON CG42784
3L	8473686	3L_8473686_SNP [dm3] 3L_8480586_SNP [dm6]	G	A	3.410e^-4	0.696	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	10792230	2R_10792230_SNP [dm3] 2R_14904725_SNP [dm6]	T	G	3.413e^-4	0.696	NON_SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16781706	X_16781706_SNP [dm3] X_16887673_SNP [dm6]	A	C	3.417e^-4	0.696	SYNONYMOUS_CODING CG4880	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3L	9410635	3L_9410635_SNP [dm3] 3L_9417535_SNP [dm6]	C	G	3.420e^-4	0.696	UPSTREAM CG3982 INTRON CG3967
3R	21045845	3R_21045845_SNP [dm3] 3R_25220123_SNP [dm6]	T	C	3.424e^-4	0.696	SPLICE_SITE_REGION CG31103 INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3R	20808276	3R_20808276_SNP [dm3] 3R_24982554_SNP [dm6]	G	A	3.436e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	19174149	X_19174149_SNP [dm3] X_19280116_SNP [dm6]	C	T	3.438e^-4	0.696	UTR_5_PRIME CG8028 INTRON CG8028
X	6613791	X_6613791_SNP [dm3] X_6719758_SNP [dm6]	C	G	3.438e^-4	0.696	DOWNSTREAM CG3168 & 1 other INTERGENIC
X	11232520	X_11232520_DEL [dm3] X_11338487_DEL [dm6]	TT	T	3.438e^-4	0.696	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	7968350	2L_7968350_SNP [dm3] 2L_7968350_SNP [dm6]	T	C	3.441e^-4	0.696	INTRON Snoo
2L	16229370	2L_16229370_SNP [dm3] 2L_16229370_SNP [dm6]	G	C	3.442e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20885236	X_20885236_SNP [dm3] X_21014209_SNP [dm6]	G	A	3.450e^-4	0.696	INTERGENIC
3R	10234626	3R_10234626_SNP [dm3] 3R_14408904_SNP [dm6]	A	G	3.452e^-4	0.696	SYNONYMOUS_CODING cv-c
3L	11043479	3L_11043479_DEL [dm3] 3L_11050379_DEL [dm6]	AA	A	3.453e^-4	0.696	UTR_5_PRIME CG43693 UPSTREAM CR45119 INTRON CG43693
2L	11470208	2L_11470208_INS [dm3] 2L_11470208_INS [dm6]	G	GT	3.453e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12530648	2R_12530648_SNP [dm3] 2R_16643143_SNP [dm6]	T	C	3.454e^-4	0.696	INTRON gprs	TF binding site BDTNP1_TFBS_da
3L	6578142	3L_6578142_DEL [dm3] 3L_6585042_DEL [dm6]	AAAATA	GT	3.455e^-4	0.696	INTRON CG18769 & 1 other
2L	15333765	2L_15333765_SNP [dm3] 2L_15333765_SNP [dm6]	G	T	3.456e^-4	0.696	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9897964	2R_9897964_SNP [dm3] 2R_14010459_SNP [dm6]	A	T	3.457e^-4	0.696	START_GAINED mam UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6878194	X_6878194_SNP [dm3] X_6984161_SNP [dm6]	G	A	3.461e^-4	0.696	START_GAINED ogre UTR_5_PRIME ogre INTRON ogre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6547412	3R_6547412_SNP [dm3] 3R_10721690_SNP [dm6]	T	C	3.475e^-4	0.698	INTERGENIC
2R	14791631	2R_14791631_SNP [dm3] 2R_18904126_SNP [dm6]	T	C	3.482e^-4	0.698	INTRON sano	TF binding site BDTNP1_TFBS_dl
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	3.484e^-4	0.698	INTRON timeout & 2 others
3L	9607230	3L_9607230_SNP [dm3] 3L_9614130_SNP [dm6]	G	A	3.488e^-4	0.698	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	5673277	3L_5673277_SNP [dm3] 3L_5680177_SNP [dm6]	T	C	3.496e^-4	0.698	INTRON sif
2L	14960510	2L_14960510_SNP [dm3] 2L_14960510_SNP [dm6]	A	C	3.504e^-4	0.698	INTRON CG42313
2R	10862929	2R_10862929_SNP [dm3] 2R_14975424_SNP [dm6]	T	C	3.504e^-4	0.698	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11363844	2L_11363844_SNP [dm3] 2L_11363844_SNP [dm6]	C	T	3.508e^-4	0.698	INTRON salr	TF binding site mE1_TFBS_HSA
3R	2991963	3R_2991963_SNP [dm3] 3R_7166241_SNP [dm6]	T	G	3.508e^-4	0.698	INTRON sas
3R	3563227	3R_3563227_SNP [dm3] 3R_7737505_SNP [dm6]	G	A	3.509e^-4	0.698	INTERGENIC
2R	18015182	2R_18015182_SNP [dm3] 2R_22127677_SNP [dm6]	C	T	3.516e^-4	0.698	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
X	16959130	X_16959130_SNP [dm3] X_17065097_SNP [dm6]	C	T	3.517e^-4	0.698	INTRON CG45002
3L	6291710	3L_6291710_SNP [dm3] 3L_6298610_SNP [dm6]	C	T	3.523e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10792177	2R_10792177_SNP [dm3] 2R_14904672_SNP [dm6]	A	G	3.526e^-4	0.698	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15751456	3L_15751456_SNP [dm3] 3L_15758356_SNP [dm6]	C	G	3.531e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14846084	3R_14846084_SNP [dm3] 3R_19020362_SNP [dm6]	T	C	3.535e^-4	0.698	DOWNSTREAM gukh INTRON gukh
3R	25930541	3R_25930541_SNP [dm3] 3R_30104819_SNP [dm6]	A	G	3.536e^-4	0.698	INTRON sima
3L	3031062	3L_3031062_SNP [dm3] 3L_3031062_SNP [dm6]	A	G	3.538e^-4	0.698	INTERGENIC
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	3.564e^-4	0.701	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11703214	2L_11703214_SNP [dm3] 2L_11703214_SNP [dm6]	C	T	3.564e^-4	0.701	INTERGENIC
X	10903951	X_10903951_SNP [dm3] X_11009918_SNP [dm6]	A	G	3.564e^-4	0.701	INTRON CG42339
3R	8507405	3R_8507405_SNP [dm3] 3R_12681683_SNP [dm6]	G	T	3.574e^-4	0.701	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
2L	11405724	2L_11405724_SNP [dm3] 2L_11405724_SNP [dm6]	A	T	3.576e^-4	0.701	INTERGENIC	regulatory region REDfly_CRMs
3L	2715961	3L_2715961_SNP [dm3] 3L_2715961_SNP [dm6]	T	G	3.578e^-4	0.701	INTERGENIC
3L	20466959	3L_20466959_SNP [dm3] 3L_20473859_SNP [dm6]	T	C	3.587e^-4	0.701	UTR_5_PRIME CG5969 UPSTREAM CG32428 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	20885940	X_20885940_SNP [dm3] X_21014913_SNP [dm6]	G	C	3.587e^-4	0.701	INTERGENIC
3R	8076578	3R_8076578_SNP [dm3] 3R_12250856_SNP [dm6]	A	G	3.591e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10032166	2L_10032166_SNP [dm3] 2L_10032166_SNP [dm6]	C	A	3.593e^-4	0.701	UPSTREAM obst-B INTERGENIC
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	3.607e^-4	0.703	INTRON CG15630
2R	8876522	2R_8876522_SNP [dm3] 2R_12989017_SNP [dm6]	T	A	3.615e^-4	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20697081	3R_20697081_SNP [dm3] 3R_24871359_SNP [dm6]	G	T	3.615e^-4	0.703	UTR_3_PRIME CG3744 UPSTREAM CycB3 DOWNSTREAM CG3744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26006780	3R_26006780_SNP [dm3] 3R_30181058_SNP [dm6]	T	A	3.619e^-4	0.703	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
X	1278019	X_1278019_SNP [dm3] X_1383986_SNP [dm6]	C	G	3.628e^-4	0.703	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	3182132	3R_3182132_SNP [dm3] 3R_7356410_SNP [dm6]	A	G	3.631e^-4	0.703	INTERGENIC
2L	12863192	2L_12863192_SNP [dm3] 2L_12863192_SNP [dm6]	A	T	3.635e^-4	0.703	INTERGENIC
2L	21706260	2L_21706260_SNP [dm3] 2L_21706260_SNP [dm6]	A	G	3.638e^-4	0.703	INTRON CG31619	transposable element FlyBase
2R	9648655	2R_9648655_SNP [dm3] 2R_13761150_SNP [dm6]	G	C	3.638e^-4	0.703	INTERGENIC
2L	19719196	2L_19719196_SNP [dm3] 2L_19719196_SNP [dm6]	T	A	3.640e^-4	0.703	INTRON Lar	TF binding site mE1_TFBS_inv
2L	11444963	2L_11444963_SNP [dm3] 2L_11444963_SNP [dm6]	C	A	3.649e^-4	0.704	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11710176	2L_11710176_DEL [dm3] 2L_11710176_DEL [dm6]	TATAGTGTAATAATG...	T	3.667e^-4	0.705	INTERGENIC
X	7913235	X_7913235_INS [dm3] X_8019202_INS [dm6]	A	AA	3.673e^-4	0.705	DOWNSTREAM CG15333 INTRON Tbh
3L	11591974	3L_11591974_SNP [dm3] 3L_11598874_SNP [dm6]	T	G	3.679e^-4	0.705	DOWNSTREAM CG14137 INTRON CG7368	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
3L	18315806	3L_18315806_SNP [dm3] 3L_18322706_SNP [dm6]	A	T	3.679e^-4	0.705	INTERGENIC
2R	7622684	2R_7622684_INS [dm3] 2R_11735179_INS [dm6]	C	CACAAC	3.680e^-4	0.705	INTERGENIC
3R	12528593	3R_12528593_SNP [dm3] 3R_16702871_SNP [dm6]	A	G	3.682e^-4	0.705	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	6547365	3R_6547365_SNP [dm3] 3R_10721643_SNP [dm6]	A	G	3.683e^-4	0.705	INTERGENIC
3L	18453296	3L_18453296_SNP [dm3] 3L_18460196_SNP [dm6]	A	C	3.696e^-4	0.705	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10028321	2L_10028321_SNP [dm3] 2L_10028321_SNP [dm6]	A	T	3.702e^-4	0.705	NON_SYNONYMOUS_CODING CG13127
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	3.702e^-4	0.705	INTRON CR44941
2L	8097172	2L_8097172_SNP [dm3] 2L_8097172_SNP [dm6]	A	T	3.704e^-4	0.705	INTRON Bsg
2L	16161352	2L_16161352_SNP [dm3] 2L_16161352_SNP [dm6]	C	T	3.705e^-4	0.705	INTERGENIC
2L	20702122	2L_20702122_SNP [dm3] 2L_20702122_SNP [dm6]	G	A	3.708e^-4	0.705	INTRON Hr38
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	3.715e^-4	0.705	DOWNSTREAM ppk26 INTERGENIC
2R	6887908	2R_6887908_SNP [dm3] 2R_11000403_SNP [dm6]	C	A	3.716e^-4	0.705	INTRON luna
X	8683022	X_8683022_SNP [dm3] X_8788989_SNP [dm6]	A	G	3.718e^-4	0.705	INTRON Lim1
2L	14956435	2L_14956435_SNP [dm3] 2L_14956435_SNP [dm6]	T	A	3.720e^-4	0.705	INTRON CG42313
2L	11428759	2L_11428759_SNP [dm3] 2L_11428759_SNP [dm6]	T	C	3.723e^-4	0.705	INTERGENIC
X	7045192	X_7045192_SNP [dm3] X_7151159_SNP [dm6]	T	G	3.729e^-4	0.706	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5645415	3L_5645415_SNP [dm3] 3L_5652315_SNP [dm6]	C	T	3.744e^-4	0.706	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15223162	3R_15223162_SNP [dm3] 3R_19397440_SNP [dm6]	T	G	3.744e^-4	0.706	UTR_3_PRIME CG31244 INTRON Ino80
2R	19240200	2R_19240200_SNP [dm3] 2R_23352677_SNP [dm6]	C	G	3.745e^-4	0.706	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19240636	2R_19240636_SNP [dm3] 2R_23353113_SNP [dm6]	A	G	3.745e^-4	0.706	DOWNSTREAM CG34210 INTERGENIC
2R	2953036	2R_2953036_SNP [dm3] 2R_7065531_SNP [dm6]	T	A	3.750e^-4	0.706	INTRON Tsp42Er
X	16220706	X_16220706_SNP [dm3] X_16326673_SNP [dm6]	A	C	3.758e^-4	0.706	DOWNSTREAM CG32579 INTRON CalpC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11465996	2L_11465996_SNP [dm3] 2L_11465996_SNP [dm6]	T	C	3.758e^-4	0.706	INTERGENIC
X	5832831	X_5832831_SNP [dm3] X_5938798_SNP [dm6]	C	A	3.759e^-4	0.706	SYNONYMOUS_CODING CG3726	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	11471189	2L_11471189_SNP [dm3] 2L_11471189_SNP [dm6]	G	A	3.769e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_cad

Missing results

By genomic position
Variant impact
Gene name

Cuticul_9_13_C25_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results