DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.345e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2709 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	21936726	2L_21936726_SNP [dm3] 2L_21936726_SNP [dm6]	G	A	9.852e^-8	0.185	INTERGENIC	transposable element FlyBase
2L	21732411	2L_21732411_SNP [dm3] 2L_21732411_SNP [dm6]	T	C	2.586e^-7	0.227	INTERGENIC	transposable element FlyBase
2L	21614283	2L_21614283_SNP [dm3] 2L_21614283_SNP [dm6]	G	A	4.323e^-7	0.227	UTR_3_PRIME CG2201 DOWNSTREAM CG2201
3R	17682853	3R_17682853_SNP [dm3] 3R_21857131_SNP [dm6]	A	G	4.836e^-7	0.227	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	21842439	2L_21842439_SNP [dm3] 2L_21842439_SNP [dm6]	G	A	6.333e^-7	0.238	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	10378520	3R_10378520_SNP [dm3] 3R_14552798_SNP [dm6]	T	C	7.993e^-7	0.25	INTRON Pde6
2L	21824030	2L_21824030_SNP [dm3] 2L_21824030_SNP [dm6]	C	G	1.097e^-6	0.28	INTERGENIC
2R	13205979	2R_13205979_SNP [dm3] 2R_17318474_SNP [dm6]	C	A	1.194e^-6	0.28	INTRON mbl
2L	22038981	2L_22038981_SNP [dm3] 2L_22038981_SNP [dm6]	A	T	1.431e^-6	0.298	INTRON CG41434
3R	11665139	3R_11665139_SNP [dm3] 3R_15839417_SNP [dm6]	A	G	2.076e^-6	0.386	UTR_5_PRIME Pbp45 INTRON spn-E	TF binding site mE1_TFBS_cad
3R	17682885	3R_17682885_SNP [dm3] 3R_21857163_SNP [dm6]	A	T	2.479e^-6	0.386	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	22063027	2L_22063027_SNP [dm3] 2L_22063027_SNP [dm6]	C	T	2.561e^-6	0.386	INTERGENIC
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	2.676e^-6	0.386	INTERGENIC
2L	21953133	2L_21953133_SNP [dm3] 2L_21953133_SNP [dm6]	T	C	2.969e^-6	0.398	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22063032	2L_22063032_SNP [dm3] 2L_22063032_SNP [dm6]	C	A	3.252e^-6	0.407	INTERGENIC
2L	1081512	2L_1081512_SNP [dm3] 2L_1081512_SNP [dm6]	C	T	3.670e^-6	0.413	DOWNSTREAM ast INTRON Atg4a
2L	21912388	2L_21912388_SNP [dm3] 2L_21912388_SNP [dm6]	G	A	4.279e^-6	0.413	INTERGENIC	transposable element FlyBase
X	14241937	X_14241937_SNP [dm3] X_14347904_SNP [dm6]	T	A	4.413e^-6	0.413	INTRON dpr8
X	14241965	X_14241965_SNP [dm3] X_14347932_SNP [dm6]	T	A	4.982e^-6	0.413	INTRON dpr8
3R	4045070	3R_4045070_SNP [dm3] 3R_8219348_SNP [dm6]	T	A	5.013e^-6	0.413	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
3R	10975535	3R_10975535_SNP [dm3] 3R_15149813_SNP [dm6]	T	C	5.060e^-6	0.413	UPSTREAM Gyc88E INTERGENIC
2L	21812733	2L_21812733_SNP [dm3] 2L_21812733_SNP [dm6]	C	T	5.237e^-6	0.413	INTERGENIC
2L	10104398	2L_10104398_SNP [dm3] 2L_10104398_SNP [dm6]	C	T	5.239e^-6	0.413	INTRON CG44153 & 1 other
2L	21914642	2L_21914642_SNP [dm3] 2L_21914642_SNP [dm6]	A	C	5.864e^-6	0.413	NON_SYNONYMOUS_CODING CG31600
3R	19288847	3R_19288847_SNP [dm3] 3R_23463125_SNP [dm6]	C	T	6.146e^-6	0.413	INTRON CG4374
2L	13107278	2L_13107278_SNP [dm3] 2L_13107278_SNP [dm6]	T	C	6.531e^-6	0.413	SPLICE_SITE_REGION CG5142 INTRON CG5142	TF binding site mE1_TFBS_chinmo
2L	21807317	2L_21807317_SNP [dm3] 2L_21807317_SNP [dm6]	C	T	6.774e^-6	0.413	INTERGENIC
X	14241970	X_14241970_SNP [dm3] X_14347937_SNP [dm6]	G	C	6.962e^-6	0.413	INTRON dpr8
X	7279914	X_7279914_SNP [dm3] X_7385881_SNP [dm6]	C	T	7.947e^-6	0.413	INTRON CG1677 & 1 other
X	14950502	X_14950502_SNP [dm3] X_15056469_SNP [dm6]	T	A	8.710e^-6	0.413	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
3R	10796547	3R_10796547_SNP [dm3] 3R_14970825_SNP [dm6]	C	T	8.814e^-6	0.413	INTERGENIC
2R	12857159	2R_12857159_SNP [dm3] 2R_16969654_SNP [dm6]	A	T	9.405e^-6	0.413	EXON CR44377
2L	21837609	2L_21837609_SNP [dm3] 2L_21837609_SNP [dm6]	T	A	9.587e^-6	0.413	DOWNSTREAM tsh INTERGENIC
3R	14998359	3R_14998359_SNP [dm3] 3R_19172637_SNP [dm6]	A	G	9.798e^-6	0.413	INTERGENIC
2L	6121812	2L_6121812_SNP [dm3] 2L_6121812_SNP [dm6]	T	C	9.902e^-6	0.413	SYNONYMOUS_CODING stai
3L	9187589	3L_9187589_SNP [dm3] 3L_9194489_SNP [dm6]	G	A	1.013e^-5	0.413	INTERGENIC
3L	9298307	3L_9298307_SNP [dm3] 3L_9305207_SNP [dm6]	G	T	1.084e^-5	0.413	INTERGENIC
X	5671591	X_5671591_SNP [dm3] X_5777558_SNP [dm6]	A	G	1.130e^-5	0.413	SYNONYMOUS_CODING CG3108 UPSTREAM CG42264 INTRON CG42699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12829815	3L_12829815_SNP [dm3] 3L_12836715_SNP [dm6]	T	C	1.131e^-5	0.413	INTRON CG10960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13954266	2L_13954266_SNP [dm3] 2L_13954266_SNP [dm6]	G	A	1.163e^-5	0.413	INTRON Ance-3
2L	21869148	2L_21869148_SNP [dm3] 2L_21869148_SNP [dm6]	T	C	1.181e^-5	0.413	DOWNSTREAM CR44920 INTRON CR44917 EXON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22013641	2L_22013641_SNP [dm3] 2L_22013641_SNP [dm6]	T	A	1.183e^-5	0.413	INTERGENIC
2L	21933691	2L_21933691_SNP [dm3] 2L_21933691_SNP [dm6]	T	C	1.229e^-5	0.413	INTERGENIC
3L	16746853	3L_16746853_INS [dm3] 3L_16753753_INS [dm6]	T	TTCTGCCT	1.298e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_cad
X	16767345	X_16767345_SNP [dm3] X_16873312_SNP [dm6]	G	T	1.365e^-5	0.413	INTRON CG13003
3R	14960640	3R_14960640_SNP [dm3] 3R_19134918_SNP [dm6]	T	A	1.401e^-5	0.413	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	22038979	2L_22038979_SNP [dm3] 2L_22038979_SNP [dm6]	T	A	1.410e^-5	0.413	INTRON CG41434
3R	10796751	3R_10796751_SNP [dm3] 3R_14971029_SNP [dm6]	A	C	1.425e^-5	0.413	INTERGENIC
3R	5700180	3R_5700180_SNP [dm3] 3R_9874458_SNP [dm6]	C	T	1.435e^-5	0.413	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21874135	2L_21874135_SNP [dm3] 2L_21874135_SNP [dm6]	C	T	1.442e^-5	0.413	INTERGENIC
3L	6747645	3L_6747645_SNP [dm3] 3L_6754545_SNP [dm6]	A	G	1.484e^-5	0.413	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	6747783	3L_6747783_SNP [dm3] 3L_6754683_SNP [dm6]	T	C	1.484e^-5	0.413	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	6747848	3L_6747848_SNP [dm3] 3L_6754748_SNP [dm6]	G	C	1.484e^-5	0.413	SYNONYMOUS_CODING CG10103 DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	6747660	3L_6747660_SNP [dm3] 3L_6754560_SNP [dm6]	C	A	1.484e^-5	0.413	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
3L	5944949	3L_5944949_SNP [dm3] 3L_5951849_SNP [dm6]	A	G	1.496e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14960436	3R_14960436_SNP [dm3] 3R_19134714_SNP [dm6]	G	C	1.501e^-5	0.413	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	21904830	2L_21904830_SNP [dm3] 2L_21904830_SNP [dm6]	G	T	1.508e^-5	0.413	INTERGENIC
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	1.527e^-5	0.413	UTR_3_PRIME rudhira INTRON rudhira
2L	15487323	2L_15487323_SNP [dm3] 2L_15487323_SNP [dm6]	A	C	1.552e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21911070	2L_21911070_SNP [dm3] 2L_21911070_SNP [dm6]	T	C	1.599e^-5	0.413	INTERGENIC
2L	13249133	2L_13249133_SNP [dm3] 2L_13249133_SNP [dm6]	T	C	1.626e^-5	0.413	NON_SYNONYMOUS_CODING CG16820
3L	6750666	3L_6750666_SNP [dm3] 3L_6757566_SNP [dm6]	C	T	1.635e^-5	0.413	SYNONYMOUS_CODING CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6750678	3L_6750678_SNP [dm3] 3L_6757578_SNP [dm6]	T	C	1.635e^-5	0.413	SYNONYMOUS_CODING CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13237887	2L_13237887_INS [dm3] 2L_13237887_INS [dm6]	T	TT	1.650e^-5	0.413	INTRON CG5867
2L	21968495	2L_21968495_SNP [dm3] 2L_21968495_SNP [dm6]	G	T	1.668e^-5	0.413	INTERGENIC
X	16767443	X_16767443_SNP [dm3] X_16873410_SNP [dm6]	G	T	1.733e^-5	0.413	INTRON CG13003
X	20011962	X_20011962_SNP [dm3] X_20117929_SNP [dm6]	G	C	1.735e^-5	0.413	INTERGENIC
3R	5700061	3R_5700061_SNP [dm3] 3R_9874339_SNP [dm6]	T	C	1.737e^-5	0.413	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16435708	2R_16435708_SNP [dm3] 2R_20548203_SNP [dm6]	G	A	1.739e^-5	0.413	UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other INTRON Obp57e
2L	5022356	2L_5022356_SNP [dm3] 2L_5022356_SNP [dm6]	G	C	1.752e^-5	0.413	INTRON vkg
2L	21817966	2L_21817966_SNP [dm3] 2L_21817966_SNP [dm6]	C	T	1.755e^-5	0.413	INTERGENIC
3R	17682926	3R_17682926_SNP [dm3] 3R_21857204_SNP [dm6]	C	T	1.799e^-5	0.413	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	21924263	2L_21924263_SNP [dm3] 2L_21924263_SNP [dm6]	A	T	1.864e^-5	0.413	INTERGENIC
X	16767354	X_16767354_SNP [dm3] X_16873321_SNP [dm6]	G	A	1.895e^-5	0.413	INTRON CG13003
2L	21810663	2L_21810663_SNP [dm3] 2L_21810663_SNP [dm6]	G	C	1.910e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21868444	2L_21868444_SNP [dm3] 2L_21868444_SNP [dm6]	A	G	1.919e^-5	0.413	UPSTREAM CR44919 DOWNSTREAM CR44917 INTRON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22306995	2L_22306995_SNP [dm3] 2L_22306995_SNP [dm6]	T	A	1.968e^-5	0.413	INTERGENIC
X	7279863	X_7279863_SNP [dm3] X_7385830_SNP [dm6]	C	G	1.980e^-5	0.413	INTRON CG1677 & 1 other
2L	22094502	2L_22094502_SNP [dm3] 2L_22094502_SNP [dm6]	T	G	2.003e^-5	0.413	INTERGENIC
X	6631487	X_6631487_SNP [dm3] X_6737454_SNP [dm6]	T	C	2.019e^-5	0.413	INTRON CG3168
2L	21711463	2L_21711463_SNP [dm3] 2L_21711463_SNP [dm6]	C	T	2.082e^-5	0.413	INTRON CG31619
3R	7143370	3R_7143370_INS [dm3] 3R_11317648_INS [dm6]	C	CCCTGCTC	2.110e^-5	0.413	INTERGENIC
3L	5944943	3L_5944943_SNP [dm3] 3L_5951843_SNP [dm6]	G	A	2.115e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21866135	2L_21866135_SNP [dm3] 2L_21866135_SNP [dm6]	A	T	2.145e^-5	0.413	DOWNSTREAM CR44919 INTRON CR44917 EXON CR44918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16767329	X_16767329_SNP [dm3] X_16873296_SNP [dm6]	T	A	2.170e^-5	0.413	INTRON CG13003
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	2.191e^-5	0.413	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	399143	3R_399143_SNP [dm3] 3R_4573421_SNP [dm6]	G	T	2.265e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21798476	2L_21798476_SNP [dm3] 2L_21798476_SNP [dm6]	T	C	2.282e^-5	0.413	EXON CR44269
2L	21813041	2L_21813041_SNP [dm3] 2L_21813041_SNP [dm6]	T	C	2.282e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21818297	2L_21818297_SNP [dm3] 2L_21818297_SNP [dm6]	G	C	2.282e^-5	0.413	INTERGENIC
2L	21824882	2L_21824882_SNP [dm3] 2L_21824882_SNP [dm6]	A	G	2.282e^-5	0.413	INTERGENIC
2L	21840432	2L_21840432_SNP [dm3] 2L_21840432_SNP [dm6]	G	A	2.282e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21841744	2L_21841744_SNP [dm3] 2L_21841744_SNP [dm6]	T	A	2.282e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	21842421	2L_21842421_SNP [dm3] 2L_21842421_SNP [dm6]	C	T	2.282e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	21844719	2L_21844719_SNP [dm3] 2L_21844719_SNP [dm6]	G	A	2.282e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21848113	2L_21848113_SNP [dm3] 2L_21848113_SNP [dm6]	T	C	2.282e^-5	0.413	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14376264	2L_14376264_SNP [dm3] 2L_14376264_SNP [dm6]	G	C	2.330e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	21848438	2L_21848438_SNP [dm3] 2L_21848438_SNP [dm6]	T	C	2.339e^-5	0.413	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6748544	3L_6748544_SNP [dm3] 3L_6755444_SNP [dm6]	C	T	2.380e^-5	0.413	SYNONYMOUS_CODING CG10103	TF binding site mE1_TFBS_cad
2L	21830043	2L_21830043_SNP [dm3] 2L_21830043_SNP [dm6]	G	C	2.389e^-5	0.413	INTRON tsh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12830087	3L_12830087_SNP [dm3] 3L_12836987_SNP [dm6]	G	T	2.414e^-5	0.413	INTRON CG10960	TF binding site mE1_TFBS_HSA
3L	12830093	3L_12830093_SNP [dm3] 3L_12836993_SNP [dm6]	A	G	2.414e^-5	0.413	INTRON CG10960	TF binding site mE1_TFBS_HSA
2R	16435684	2R_16435684_SNP [dm3] 2R_20548179_SNP [dm6]	G	A	2.416e^-5	0.413	UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other INTRON Obp57e
3R	5310960	3R_5310960_SNP [dm3] 3R_9485238_SNP [dm6]	T	C	2.478e^-5	0.413	INTRON CG16779
2L	21999049	2L_21999049_SNP [dm3] 2L_21999049_SNP [dm6]	T	G	2.480e^-5	0.413	DOWNSTREAM CR44916 INTERGENIC
2L	22094595	2L_22094595_SNP [dm3] 2L_22094595_SNP [dm6]	G	A	2.504e^-5	0.413	INTERGENIC
3R	3976863	3R_3976863_SNP [dm3] 3R_8151141_SNP [dm6]	G	A	2.582e^-5	0.413	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14960570	3R_14960570_SNP [dm3] 3R_19134848_SNP [dm6]	T	G	2.623e^-5	0.413	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	21925703	2L_21925703_SNP [dm3] 2L_21925703_SNP [dm6]	A	G	2.684e^-5	0.413	INTERGENIC
2L	21630513	2L_21630513_SNP [dm3] 2L_21630513_SNP [dm6]	A	G	2.697e^-5	0.413	UPSTREAM Df31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	21981020	2L_21981020_SNP [dm3] 2L_21981020_SNP [dm6]	A	T	2.701e^-5	0.413	DOWNSTREAM CG2528 INTERGENIC	transposable element FlyBase
2L	21994791	2L_21994791_SNP [dm3] 2L_21994791_SNP [dm6]	T	C	2.701e^-5	0.413	INTERGENIC
3R	13584408	3R_13584408_SNP [dm3] 3R_17758686_SNP [dm6]	C	A	2.744e^-5	0.413	INTRON TyrR
3R	3967467	3R_3967467_SNP [dm3] 3R_8141745_SNP [dm6]	G	A	2.752e^-5	0.413	UPSTREAM tRNA:R2:84Fb & 1 other INTERGENIC
2R	14621233	2R_14621233_SNP [dm3] 2R_18733728_SNP [dm6]	A	G	2.794e^-5	0.413	INTRON Hs3st-A
2R	14964246	2R_14964246_SNP [dm3] 2R_19076741_SNP [dm6]	A	T	2.826e^-5	0.413	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2L	21914814	2L_21914814_SNP [dm3] 2L_21914814_SNP [dm6]	C	A	2.849e^-5	0.413	SYNONYMOUS_CODING CG31600
2L	21276345	2L_21276345_SNP [dm3] 2L_21276345_SNP [dm6]	C	T	2.851e^-5	0.413	INTRON CG8671
2L	21735585	2L_21735585_SNP [dm3] 2L_21735585_SNP [dm6]	A	G	2.880e^-5	0.413	INTERGENIC	transposable element FlyBase
2L	21849942	2L_21849942_SNP [dm3] 2L_21849942_SNP [dm6]	T	C	2.884e^-5	0.413	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	21919677	2L_21919677_SNP [dm3] 2L_21919677_SNP [dm6]	C	T	2.903e^-5	0.413	UTR_3_PRIME CG11634
3R	25476540	3R_25476540_SNP [dm3] 3R_29650818_SNP [dm6]	C	A	2.941e^-5	0.413	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	22208901	2L_22208901_SNP [dm3] 2L_22208901_SNP [dm6]	C	A	2.957e^-5	0.413	INTRON Ir40a	transposable element FlyBase
3R	24963025	3R_24963025_SNP [dm3] 3R_29137303_SNP [dm6]	G	C	2.974e^-5	0.413	DOWNSTREAM CG14512 INTRON Vha100-1
2L	12777419	2L_12777419_SNP [dm3] 2L_12777419_SNP [dm6]	C	T	2.999e^-5	0.413	INTERGENIC
3L	12675678	3L_12675678_INS [dm3] 3L_12682578_INS [dm6]	G	GCG	3.015e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21953363	2L_21953363_SNP [dm3] 2L_21953363_SNP [dm6]	T	C	3.019e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14120644	3R_14120644_SNP [dm3] 3R_18294922_SNP [dm6]	C	T	3.044e^-5	0.413	UPSTREAM l_3_05822 INTRON l_3_05822
3R	17023361	3R_17023361_SNP [dm3] 3R_21197639_SNP [dm6]	T	C	3.072e^-5	0.413	INTRON SNF4Agamma
X	14241958	X_14241958_SNP [dm3] X_14347925_SNP [dm6]	A	G	3.077e^-5	0.413	INTRON dpr8
3R	16443960	3R_16443960_SNP [dm3] 3R_20618238_SNP [dm6]	T	C	3.122e^-5	0.413	SYNONYMOUS_CODING CG5466	TF binding site mE1_TFBS_chinmo
3R	13484561	3R_13484561_SNP [dm3] 3R_17658839_SNP [dm6]	G	T	3.125e^-5	0.413	UPSTREAM tRNA:CR31575 INTRON CG14322
3R	4450903	3R_4450903_SNP [dm3] 3R_8625181_SNP [dm6]	C	G	3.132e^-5	0.413	INTRON 5-HT2B
2L	5396796	2L_5396796_SNP [dm3] 2L_5396796_SNP [dm6]	C	T	3.148e^-5	0.413	INTERGENIC
3R	2799335	3R_2799335_SNP [dm3] 3R_6973613_SNP [dm6]	G	A	3.152e^-5	0.413	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24599566	3R_24599566_INS [dm3] 3R_28773844_INS [dm6]	T	TT	3.157e^-5	0.413	INTERGENIC
X	14950493	X_14950493_SNP [dm3] X_15056460_SNP [dm6]	T	A	3.198e^-5	0.413	INTRON hiw	TF binding site mE1_TFBS_chinmo
2L	21954514	2L_21954514_SNP [dm3] 2L_21954514_SNP [dm6]	T	A	3.215e^-5	0.413	INTERGENIC
X	14241953	X_14241953_SNP [dm3] X_14347920_SNP [dm6]	C	T	3.237e^-5	0.413	INTRON dpr8
X	14241960	X_14241960_SNP [dm3] X_14347927_SNP [dm6]	A	T	3.237e^-5	0.413	INTRON dpr8
X	14241962	X_14241962_INS [dm3] X_14347929_INS [dm6]	G	GCAT	3.237e^-5	0.413	INTRON dpr8
2L	752508	2L_752508_DEL [dm3] 2L_752508_DEL [dm6]	CC	C	3.250e^-5	0.413	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
2R	7654371	2R_7654371_SNP [dm3] 2R_11766866_SNP [dm6]	G	T	3.279e^-5	0.413	INTRON ths
2L	754911	2L_754911_SNP [dm3] 2L_754911_SNP [dm6]	G	A	3.329e^-5	0.413	INTRON GABA-B-R3
3R	20708677	3R_20708677_SNP [dm3] 3R_24882955_SNP [dm6]	G	A	3.329e^-5	0.413	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17908273	3R_17908273_SNP [dm3] 3R_22082551_SNP [dm6]	C	T	3.355e^-5	0.413	INTRON CG13408
3L	6490574	3L_6490574_SNP [dm3] 3L_6497474_SNP [dm6]	C	T	3.361e^-5	0.413	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12253149	X_12253149_SNP [dm3] X_12359116_SNP [dm6]	A	C	3.402e^-5	0.413	INTERGENIC
2L	21912670	2L_21912670_SNP [dm3] 2L_21912670_SNP [dm6]	C	G	3.405e^-5	0.413	INTERGENIC	transposable element FlyBase
2L	21933207	2L_21933207_SNP [dm3] 2L_21933207_SNP [dm6]	C	T	3.405e^-5	0.413	INTERGENIC
3R	17908271	3R_17908271_SNP [dm3] 3R_22082549_SNP [dm6]	T	A	3.421e^-5	0.413	INTRON CG13408
2L	21869109	2L_21869109_SNP [dm3] 2L_21869109_SNP [dm6]	G	T	3.426e^-5	0.413	DOWNSTREAM CR44920 INTRON CR44917 EXON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	541774	2L_541774_SNP [dm3] 2L_541774_SNP [dm6]	A	G	3.436e^-5	0.413	SYNONYMOUS_CODING lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	21245989	2L_21245989_SNP [dm3] 2L_21245989_SNP [dm6]	T	A	3.453e^-5	0.413	INTRON Hr39
X	14241954	X_14241954_SNP [dm3] X_14347921_SNP [dm6]	C	A	3.458e^-5	0.413	INTRON dpr8
2L	13954291	2L_13954291_SNP [dm3] 2L_13954291_SNP [dm6]	G	A	3.479e^-5	0.413	INTRON Ance-3
2L	21926274	2L_21926274_SNP [dm3] 2L_21926274_SNP [dm6]	T	C	3.481e^-5	0.413	INTERGENIC
2L	21926281	2L_21926281_SNP [dm3] 2L_21926281_SNP [dm6]	T	C	3.481e^-5	0.413	INTERGENIC
2L	21750660	2L_21750660_SNP [dm3] 2L_21750660_SNP [dm6]	A	G	3.498e^-5	0.413	INTRON step
X	10343077	X_10343077_SNP [dm3] X_10449044_SNP [dm6]	A	T	3.537e^-5	0.415	INTRON CG32683
2L	21910482	2L_21910482_SNP [dm3] 2L_21910482_SNP [dm6]	C	T	3.626e^-5	0.417	INTERGENIC	TF binding site mE1_TFBS_sens
3L	5944569	3L_5944569_SNP [dm3] 3L_5951469_SNP [dm6]	A	C	3.632e^-5	0.417	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4968955	3L_4968955_SNP [dm3] 3L_4968955_SNP [dm6]	A	C	3.660e^-5	0.417	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21809916	2L_21809916_SNP [dm3] 2L_21809916_SNP [dm6]	T	C	3.661e^-5	0.417	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4537842	3L_4537842_SNP [dm3] 3L_4537842_SNP [dm6]	C	T	3.682e^-5	0.417	SYNONYMOUS_CODING CG11353
3R	17038732	3R_17038732_DEL [dm3] 3R_21213010_DEL [dm6]	TTATTACCGT	T	3.694e^-5	0.417	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
2L	21912669	2L_21912669_SNP [dm3] 2L_21912669_SNP [dm6]	A	G	3.718e^-5	0.417	INTERGENIC	transposable element FlyBase
2L	14136253	2L_14136253_SNP [dm3] 2L_14136253_SNP [dm6]	C	A	3.803e^-5	0.417	INTRON CG17341
2L	21903874	2L_21903874_SNP [dm3] 2L_21903874_SNP [dm6]	G	A	3.824e^-5	0.417	DOWNSTREAM CG1421 INTERGENIC
2L	21941019	2L_21941019_SNP [dm3] 2L_21941019_SNP [dm6]	A	G	3.848e^-5	0.417	INTERGENIC
X	14241967	X_14241967_SNP [dm3] X_14347934_SNP [dm6]	C	T	3.900e^-5	0.417	INTRON dpr8
3R	21528444	3R_21528444_SNP [dm3] 3R_25702722_SNP [dm6]	A	G	3.976e^-5	0.417	INTRON LpR2
3L	18158141	3L_18158141_SNP [dm3] 3L_18165041_SNP [dm6]	A	T	3.993e^-5	0.417	INTERGENIC
3R	24963056	3R_24963056_SNP [dm3] 3R_29137334_SNP [dm6]	A	T	3.995e^-5	0.417	DOWNSTREAM CG14512 INTRON Vha100-1
2L	21898897	2L_21898897_SNP [dm3] 2L_21898897_SNP [dm6]	T	C	4.017e^-5	0.417	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	22063221	2L_22063221_SNP [dm3] 2L_22063221_SNP [dm6]	C	A	4.022e^-5	0.417	INTERGENIC
2L	13954298	2L_13954298_SNP [dm3] 2L_13954298_SNP [dm6]	C	T	4.026e^-5	0.417	INTRON Ance-3
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	4.084e^-5	0.417	INTERGENIC
X	14243711	X_14243711_SNP [dm3] X_14349678_SNP [dm6]	C	G	4.103e^-5	0.417	INTRON dpr8
3L	9187513	3L_9187513_SNP [dm3] 3L_9194413_SNP [dm6]	A	T	4.128e^-5	0.417	INTERGENIC
3L	2749835	3L_2749835_SNP [dm3] 3L_2749835_SNP [dm6]	G	A	4.131e^-5	0.417	INTRON Mrtf
3L	18158174	3L_18158174_SNP [dm3] 3L_18165074_SNP [dm6]	A	C	4.181e^-5	0.417	INTERGENIC
2L	13954337	2L_13954337_SNP [dm3] 2L_13954337_SNP [dm6]	C	T	4.185e^-5	0.417	INTRON Ance-3
2L	21722307	2L_21722307_SNP [dm3] 2L_21722307_SNP [dm6]	A	C	4.211e^-5	0.417	INTRON CG31619
2L	21252898	2L_21252898_SNP [dm3] 2L_21252898_SNP [dm6]	T	A	4.229e^-5	0.417	INTRON Hr39	transposable element FlyBase
X	14241973	X_14241973_INS [dm3] X_14347940_INS [dm6]	A	TAATAC	4.234e^-5	0.417	INTRON dpr8
X	14241980	X_14241980_SNP [dm3] X_14347947_SNP [dm6]	G	A	4.234e^-5	0.417	INTRON dpr8
X	4455682	X_4455682_SNP [dm3] X_4561649_SNP [dm6]	T	G	4.240e^-5	0.417	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	21678446	3R_21678446_SNP [dm3] 3R_25852724_SNP [dm6]	A	T	4.249e^-5	0.417	INTRON CG5886	TF binding site mE1_TFBS_sens
X	14947510	X_14947510_SNP [dm3] X_15053477_SNP [dm6]	T	C	4.259e^-5	0.417	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21905620	2L_21905620_SNP [dm3] 2L_21905620_SNP [dm6]	G	T	4.263e^-5	0.417	UPSTREAM CG1428 INTERGENIC
2L	9100807	2L_9100807_SNP [dm3] 2L_9100807_SNP [dm6]	C	T	4.272e^-5	0.417	INTERGENIC
3R	23194813	3R_23194813_SNP [dm3] 3R_27369091_SNP [dm6]	A	G	4.313e^-5	0.417	INTRON CG42534 EXON CR43476
2L	22017710	2L_22017710_SNP [dm3] 2L_22017710_SNP [dm6]	T	A	4.317e^-5	0.417	DOWNSTREAM CG31693 INTERGENIC
2L	21900484	2L_21900484_SNP [dm3] 2L_21900484_SNP [dm6]	G	T	4.371e^-5	0.418	INTERGENIC	transposable element FlyBase
3R	16538253	3R_16538253_SNP [dm3] 3R_20712531_SNP [dm6]	T	C	4.372e^-5	0.418	INTRON Oamb
2L	6121889	2L_6121889_SNP [dm3] 2L_6121889_SNP [dm6]	C	T	4.409e^-5	0.42	SYNONYMOUS_CODING stai
2R	13449183	2R_13449183_SNP [dm3] 2R_17561678_SNP [dm6]	C	A	4.440e^-5	0.421	INTRON Klp54D
2R	14965997	2R_14965997_SNP [dm3] 2R_19078492_SNP [dm6]	T	C	4.477e^-5	0.422	INTRON 5-HT1A
2L	21256708	2L_21256708_SNP [dm3] 2L_21256708_SNP [dm6]	G	A	4.514e^-5	0.422	DOWNSTREAM Hr39 INTRON Hr39	transposable element FlyBase
X	9704616	X_9704616_SNP [dm3] X_9810583_SNP [dm6]	C	A	4.518e^-5	0.422	INTRON CG32698
2L	10474033	2L_10474033_SNP [dm3] 2L_10474033_SNP [dm6]	G	A	4.550e^-5	0.423	INTRON RluA-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	4807356	X_4807356_SNP [dm3] X_4913323_SNP [dm6]	T	C	4.579e^-5	0.423	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14242196	X_14242196_SNP [dm3] X_14348163_SNP [dm6]	T	C	4.670e^-5	0.428	INTRON dpr8
3R	6402797	3R_6402797_SNP [dm3] 3R_10577075_SNP [dm6]	A	T	4.673e^-5	0.428	INTRON hth	TF binding site mE1_TFBS_HSA
2R	13832747	2R_13832747_SNP [dm3] 2R_17945242_SNP [dm6]	G	A	4.717e^-5	0.429	INTERGENIC
2L	14044844	2L_14044844_SNP [dm3] 2L_14044844_SNP [dm6]	C	T	4.744e^-5	0.43	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	14951095	X_14951095_SNP [dm3] X_15057062_SNP [dm6]	A	G	4.846e^-5	0.436	INTRON hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16443609	3R_16443609_SNP [dm3] 3R_20617887_SNP [dm6]	A	C	4.902e^-5	0.436	START_GAINED CG5466 UTR_5_PRIME CG5466 UPSTREAM CG15923
2R	12028033	2R_12028033_SNP [dm3] 2R_16140528_SNP [dm6]	T	A	4.943e^-5	0.436	SYNONYMOUS_CODING Got1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3L	7300140	3L_7300140_SNP [dm3] 3L_7307040_SNP [dm6]	A	G	4.946e^-5	0.436	INTRON unc-13-4A
2R	12027996	2R_12027996_SNP [dm3] 2R_16140491_SNP [dm6]	G	C	4.967e^-5	0.436	INTRON Got1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11809811	2R_11809811_SNP [dm3] 2R_15922306_SNP [dm6]	T	C	4.982e^-5	0.436	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	22215065	2L_22215065_SNP [dm3] 2L_22215065_SNP [dm6]	G	A	5.010e^-5	0.436	UPSTREAM Ir40a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14963690	2R_14963690_SNP [dm3] 2R_19076185_SNP [dm6]	G	A	5.012e^-5	0.436	INTRON 5-HT1A
3L	7085366	3L_7085366_SNP [dm3] 3L_7092266_SNP [dm6]	G	A	5.016e^-5	0.436	UPSTREAM Cpr65Ec INTERGENIC
2L	21632019	2L_21632019_SNP [dm3] 2L_21632019_SNP [dm6]	T	G	5.139e^-5	0.444	UPSTREAM Ac3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25468633	3R_25468633_SNP [dm3] 3R_29642911_SNP [dm6]	G	A	5.160e^-5	0.444	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
X	4806956	X_4806956_SNP [dm3] X_4912923_SNP [dm6]	G	T	5.188e^-5	0.444	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10975542	3R_10975542_SNP [dm3] 3R_15149820_SNP [dm6]	A	T	5.257e^-5	0.447	UPSTREAM Gyc88E INTERGENIC
X	7068653	X_7068653_SNP [dm3] X_7174620_SNP [dm6]	T	C	5.269e^-5	0.447	INTRON CG9650 & 1 other
3R	21529045	3R_21529045_SNP [dm3] 3R_25703323_SNP [dm6]	C	G	5.309e^-5	0.447	INTRON LpR2
2R	14966153	2R_14966153_SNP [dm3] 2R_19078648_SNP [dm6]	A	T	5.342e^-5	0.447	INTRON 5-HT1A
2L	21870705	2L_21870705_SNP [dm3] 2L_21870705_SNP [dm6]	G	T	5.363e^-5	0.447	UPSTREAM CR44920 DOWNSTREAM CR44917 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20006816	3R_20006816_SNP [dm3] 3R_24181094_SNP [dm6]	A	C	5.367e^-5	0.447	UTR_3_PRIME CG13606 INTRON CG13606
2R	8833148	2R_8833148_SNP [dm3] 2R_12945643_SNP [dm6]	A	T	5.412e^-5	0.449	INTRON Mdr49	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21625548	2L_21625548_SNP [dm3] 2L_21625548_SNP [dm6]	C	A	5.571e^-5	0.46	DOWNSTREAM Df31 & 1 other EXON CR43148
2L	754913	2L_754913_SNP [dm3] 2L_754913_SNP [dm6]	A	C	5.637e^-5	0.463	INTRON GABA-B-R3
X	14243646	X_14243646_SNP [dm3] X_14349613_SNP [dm6]	A	G	5.656e^-5	0.463	INTRON dpr8
3R	21528550	3R_21528550_SNP [dm3] 3R_25702828_SNP [dm6]	T	G	5.782e^-5	0.472	INTRON LpR2
2L	21889812	2L_21889812_SNP [dm3] 2L_21889812_SNP [dm6]	A	G	5.819e^-5	0.472	EXON CR45362	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8826226	3L_8826226_SNP [dm3] 3L_8833126_SNP [dm6]	T	G	5.909e^-5	0.476	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14241968	X_14241968_SNP [dm3] X_14347935_SNP [dm6]	A	G	5.918e^-5	0.476	INTRON dpr8
X	12518599	X_12518599_DEL [dm3] X_12624566_DEL [dm6]	TG	T	5.965e^-5	0.478	INTRON CG15728
2L	21680087	2L_21680087_SNP [dm3] 2L_21680087_SNP [dm6]	C	A	6.001e^-5	0.478	SYNONYMOUS_CODING EF2 DOWNSTREAM snmRNA:254	TF binding site mE1_TFBS_cad
3R	14314176	3R_14314176_SNP [dm3] 3R_18488454_SNP [dm6]	G	A	6.010e^-5	0.478	INTRON fru
3L	18158179	3L_18158179_SNP [dm3] 3L_18165079_SNP [dm6]	T	C	6.059e^-5	0.48	INTERGENIC
2R	12025619	2R_12025619_SNP [dm3] 2R_16138114_SNP [dm6]	G	A	6.214e^-5	0.486	UTR_3_PRIME spin UPSTREAM Got1 DOWNSTREAM spin
X	14241885	X_14241885_SNP [dm3] X_14347852_SNP [dm6]	G	A	6.241e^-5	0.486	INTRON dpr8
2L	21913441	2L_21913441_SNP [dm3] 2L_21913441_SNP [dm6]	G	A	6.241e^-5	0.486	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
2L	21938813	2L_21938813_SNP [dm3] 2L_21938813_SNP [dm6]	T	A	6.241e^-5	0.486	INTERGENIC
3R	3988140	3R_3988140_SNP [dm3] 3R_8162418_SNP [dm6]	G	A	6.337e^-5	0.488	INTRON grn
2L	21891888	2L_21891888_SNP [dm3] 2L_21891888_SNP [dm6]	C	A	6.338e^-5	0.488	UPSTREAM CR45362 INTERGENIC
2L	13434665	2L_13434665_SNP [dm3] 2L_13434665_SNP [dm6]	C	T	6.342e^-5	0.488	UPSTREAM Tehao INTRON CG42784	TF binding site mE1_TFBS_cad
3R	1635734	3R_1635734_SNP [dm3] 3R_5810012_SNP [dm6]	T	A	6.436e^-5	0.493	UTR_3_PRIME CG11000
X	3319655	X_3319655_SNP [dm3] X_3425622_SNP [dm6]	G	T	6.513e^-5	0.495	INTRON CR44999 & 1 other
3R	3964248	3R_3964248_SNP [dm3] 3R_8138526_SNP [dm6]	A	G	6.514e^-5	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14966150	2R_14966150_SNP [dm3] 2R_19078645_SNP [dm6]	C	T	6.575e^-5	0.495	INTRON 5-HT1A
2L	21713496	2L_21713496_SNP [dm3] 2L_21713496_SNP [dm6]	G	A	6.615e^-5	0.495	INTRON CG31619
2L	21609416	2L_21609416_SNP [dm3] 2L_21609416_SNP [dm6]	A	G	6.646e^-5	0.495	INTERGENIC	transposable element FlyBase
2L	21715016	2L_21715016_SNP [dm3] 2L_21715016_SNP [dm6]	T	C	6.646e^-5	0.495	INTRON CG31619
2L	21919692	2L_21919692_SNP [dm3] 2L_21919692_SNP [dm6]	C	T	6.711e^-5	0.495	UTR_3_PRIME CG11634
3R	6422634	3R_6422634_SNP [dm3] 3R_10596912_SNP [dm6]	G	C	6.714e^-5	0.495	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13434721	2L_13434721_SNP [dm3] 2L_13434721_SNP [dm6]	T	C	6.723e^-5	0.495	UPSTREAM Tehao INTRON CG42784	TF binding site mE1_TFBS_cad
2R	10796258	2R_10796258_SNP [dm3] 2R_14908753_SNP [dm6]	C	A	6.736e^-5	0.495	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19582586	2R_19582586_SNP [dm3] 2R_23695063_SNP [dm6]	T	C	6.830e^-5	0.496	SYNONYMOUS_CODING angel INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14965967	2R_14965967_SNP [dm3] 2R_19078462_SNP [dm6]	G	A	6.842e^-5	0.496	INTRON 5-HT1A
3R	10184505	3R_10184505_SNP [dm3] 3R_14358783_SNP [dm6]	A	G	6.851e^-5	0.496	SYNONYMOUS_CODING CG31320 INTRON NK7.1
X	4807039	X_4807039_SNP [dm3] X_4913006_SNP [dm6]	T	C	6.856e^-5	0.496	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14965966	2R_14965966_SNP [dm3] 2R_19078461_SNP [dm6]	T	C	6.869e^-5	0.496	INTRON 5-HT1A
2R	19453318	2R_19453318_DEL [dm3] 2R_23565795_DEL [dm6]	CT	C	6.905e^-5	0.496	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21932821	2L_21932821_SNP [dm3] 2L_21932821_SNP [dm6]	C	A	6.936e^-5	0.497	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4842416	2L_4842416_SNP [dm3] 2L_4842416_SNP [dm6]	G	T	7.000e^-5	0.498	DOWNSTREAM CG12194 & 1 other INTRON mxt
3R	10796735	3R_10796735_SNP [dm3] 3R_14971013_SNP [dm6]	A	G	7.034e^-5	0.498	INTERGENIC
2L	21898919	2L_21898919_SNP [dm3] 2L_21898919_SNP [dm6]	A	G	7.101e^-5	0.498	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15636519	3R_15636519_SNP [dm3] 3R_19810797_SNP [dm6]	C	T	7.116e^-5	0.498	INTRON bnl
2R	7654365	2R_7654365_SNP [dm3] 2R_11766860_SNP [dm6]	A	C	7.133e^-5	0.498	INTRON ths
2R	20155842	2R_20155842_SNP [dm3] 2R_24268319_SNP [dm6]	A	T	7.196e^-5	0.498	NON_SYNONYMOUS_CODING CG13577
2L	13248593	2L_13248593_SNP [dm3] 2L_13248593_SNP [dm6]	C	A	7.200e^-5	0.498	INTRON CG16820
3R	13484541	3R_13484541_SNP [dm3] 3R_17658819_SNP [dm6]	G	T	7.237e^-5	0.498	UPSTREAM tRNA:CR31575 INTRON CG14322
2L	21893680	2L_21893680_SNP [dm3] 2L_21893680_SNP [dm6]	A	T	7.263e^-5	0.498	UPSTREAM CR43762 INTERGENIC
2L	21893692	2L_21893692_SNP [dm3] 2L_21893692_SNP [dm6]	A	T	7.263e^-5	0.498	UPSTREAM CR43762 INTERGENIC
2L	21955578	2L_21955578_SNP [dm3] 2L_21955578_SNP [dm6]	C	A	7.263e^-5	0.498	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17671201	2R_17671201_SNP [dm3] 2R_21783696_SNP [dm6]	T	A	7.273e^-5	0.498	INTERGENIC
3R	6416298	3R_6416298_SNP [dm3] 3R_10590576_SNP [dm6]	G	A	7.341e^-5	0.498	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	7654311	2R_7654311_SNP [dm3] 2R_11766806_SNP [dm6]	G	C	7.369e^-5	0.498	INTRON ths
2R	14965959	2R_14965959_SNP [dm3] 2R_19078454_SNP [dm6]	A	T	7.374e^-5	0.498	INTRON 5-HT1A
2R	4391491	2R_4391491_SNP [dm3] 2R_8503986_SNP [dm6]	T	A	7.386e^-5	0.498	INTRON mtt
X	10964667	X_10964667_SNP [dm3] X_11070634_SNP [dm6]	T	G	7.507e^-5	0.501	DOWNSTREAM sev INTERGENIC
2R	14966060	2R_14966060_SNP [dm3] 2R_19078555_SNP [dm6]	G	A	7.509e^-5	0.501	INTRON 5-HT1A
2L	21964961	2L_21964961_SNP [dm3] 2L_21964961_SNP [dm6]	C	T	7.637e^-5	0.501	INTERGENIC
3L	821699	3L_821699_SNP [dm3] 3L_821699_SNP [dm6]	A	T	7.657e^-5	0.501	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21954475	2L_21954475_SNP [dm3] 2L_21954475_SNP [dm6]	G	A	7.724e^-5	0.501	INTERGENIC
2L	21940953	2L_21940953_SNP [dm3] 2L_21940953_SNP [dm6]	A	G	7.744e^-5	0.501	INTERGENIC
2L	8761726	2L_8761726_SNP [dm3] 2L_8761726_SNP [dm6]	C	G	7.749e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12816254	3L_12816254_SNP [dm3] 3L_12823154_SNP [dm6]	C	T	7.828e^-5	0.501	SYNONYMOUS_CODING CG42588
X	10336446	X_10336446_SNP [dm3] X_10442413_SNP [dm6]	G	A	7.842e^-5	0.501	INTRON CG32683
2R	16993571	2R_16993571_SNP [dm3] 2R_21106066_SNP [dm6]	C	A	7.858e^-5	0.501	INTRON ktub
X	16765494	X_16765494_SNP [dm3] X_16871461_SNP [dm6]	G	A	7.881e^-5	0.501	INTRON CG13003
2R	18003008	2R_18003008_SNP [dm3] 2R_22115503_SNP [dm6]	G	A	7.906e^-5	0.501	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2L	12631496	2L_12631496_SNP [dm3] 2L_12631496_SNP [dm6]	A	T	7.958e^-5	0.501	INTRON Ref2
3L	8672946	3L_8672946_SNP [dm3] 3L_8679846_SNP [dm6]	A	T	7.968e^-5	0.501	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5050040	X_5050040_SNP [dm3] X_5156007_SNP [dm6]	T	G	7.982e^-5	0.501	INTRON rg & 1 other
3R	9880276	3R_9880276_SNP [dm3] 3R_14054554_SNP [dm6]	T	C	7.988e^-5	0.501	INTERGENIC
2R	10796259	2R_10796259_DEL [dm3] 2R_14908754_DEL [dm6]	TATA	T	7.991e^-5	0.501	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	752826	2L_752826_SNP [dm3] 2L_752826_SNP [dm6]	T	A	7.995e^-5	0.501	UTR_5_PRIME GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	955937	2L_955937_SNP [dm3] 2L_955937_SNP [dm6]	C	A	8.008e^-5	0.501	INTRON CG4341
2L	21862872	2L_21862872_SNP [dm3] 2L_21862872_SNP [dm6]	C	A	8.165e^-5	0.501	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
X	14243625	X_14243625_SNP [dm3] X_14349592_SNP [dm6]	A	G	8.173e^-5	0.501	INTRON dpr8
2L	5757750	2L_5757750_SNP [dm3] 2L_5757750_SNP [dm6]	A	C	8.176e^-5	0.501	INTRON CG11030
2R	19582591	2R_19582591_SNP [dm3] 2R_23695068_SNP [dm6]	T	C	8.178e^-5	0.501	SYNONYMOUS_CODING angel INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14241988	X_14241988_SNP [dm3] X_14347955_SNP [dm6]	A	T	8.188e^-5	0.501	INTRON dpr8
3R	13484535	3R_13484535_SNP [dm3] 3R_17658813_SNP [dm6]	G	C	8.277e^-5	0.501	UPSTREAM tRNA:CR31575 INTRON CG14322
X	14728033	X_14728033_SNP [dm3] X_14834000_SNP [dm6]	T	C	8.283e^-5	0.501	SYNONYMOUS_CODING CG14411	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6746933	2L_6746933_SNP [dm3] 2L_6746933_SNP [dm6]	G	A	8.302e^-5	0.501	DOWNSTREAM CG44271 INTRON CG11221
2R	11703307	2R_11703307_SNP [dm3] 2R_15815802_SNP [dm6]	T	G	8.319e^-5	0.501	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl
3R	3963521	3R_3963521_SNP [dm3] 3R_8137799_SNP [dm6]	A	G	8.369e^-5	0.501	INTERGENIC
3R	2670542	3R_2670542_SNP [dm3] 3R_6844820_SNP [dm6]	G	A	8.411e^-5	0.501	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17919382	3R_17919382_SNP [dm3] 3R_22093660_SNP [dm6]	T	C	8.416e^-5	0.501	INTRON CG5778	TF binding site mE1_TFBS_run
2L	6026190	2L_6026190_SNP [dm3] 2L_6026190_SNP [dm6]	T	G	8.446e^-5	0.501	INTRON CG9109
2L	21938811	2L_21938811_SNP [dm3] 2L_21938811_SNP [dm6]	A	T	8.457e^-5	0.501	INTERGENIC
X	12756055	X_12756055_SNP [dm3] X_12862022_SNP [dm6]	A	G	8.488e^-5	0.501	INTRON Pde9
X	9704527	X_9704527_SNP [dm3] X_9810494_SNP [dm6]	G	A	8.497e^-5	0.501	INTRON CG32698
2L	22005425	2L_22005425_SNP [dm3] 2L_22005425_SNP [dm6]	G	A	8.578e^-5	0.501	INTERGENIC	transposable element FlyBase
2L	1317278	2L_1317278_SNP [dm3] 2L_1317278_SNP [dm6]	G	A	8.610e^-5	0.501	INTERGENIC
2R	14966072	2R_14966072_SNP [dm3] 2R_19078567_SNP [dm6]	A	G	8.663e^-5	0.501	INTRON 5-HT1A
X	3470704	X_3470704_SNP [dm3] X_3576671_SNP [dm6]	C	G	8.670e^-5	0.501	INTRON AstA-R1
2R	12688109	2R_12688109_DEL [dm3] 2R_16800604_DEL [dm6]	GG	G	8.701e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_bab1
X	4807392	X_4807392_SNP [dm3] X_4913359_SNP [dm6]	G	A	8.732e^-5	0.501	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12323907	2L_12323907_SNP [dm3] 2L_12323907_SNP [dm6]	A	C	8.801e^-5	0.501	INTERGENIC
2L	1081636	2L_1081636_SNP [dm3] 2L_1081636_SNP [dm6]	A	G	8.806e^-5	0.501	SYNONYMOUS_CODING Atg4a DOWNSTREAM ast
3R	21528551	3R_21528551_SNP [dm3] 3R_25702829_SNP [dm6]	C	A	8.838e^-5	0.501	INTRON LpR2
2L	955923	2L_955923_SNP [dm3] 2L_955923_SNP [dm6]	G	T	8.855e^-5	0.501	INTRON CG4341
X	4806128	X_4806128_SNP [dm3] X_4912095_SNP [dm6]	A	G	8.866e^-5	0.501	UPSTREAM CG32772 INTRON CG32772	TF binding site BDTNP1_TFBS_dl
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	8.892e^-5	0.501	INTERGENIC
2L	21929787	2L_21929787_SNP [dm3] 2L_21929787_SNP [dm6]	G	A	8.895e^-5	0.501	UPSTREAM CR45334 INTERGENIC
2L	21736621	2L_21736621_SNP [dm3] 2L_21736621_SNP [dm6]	C	A	8.966e^-5	0.501	INTERGENIC	transposable element FlyBase
3L	821922	3L_821922_SNP [dm3] 3L_821922_SNP [dm6]	C	A	8.967e^-5	0.501	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7895985	3L_7895985_SNP [dm3] 3L_7902885_SNP [dm6]	A	G	9.001e^-5	0.501	INTRON pbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21852716	2L_21852716_SNP [dm3] 2L_21852716_SNP [dm6]	A	G	9.018e^-5	0.501	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
X	14951760	X_14951760_SNP [dm3] X_15057727_SNP [dm6]	G	A	9.072e^-5	0.501	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	22010423	2L_22010423_SNP [dm3] 2L_22010423_SNP [dm6]	T	A	9.148e^-5	0.501	INTERGENIC
3L	9187700	3L_9187700_SNP [dm3] 3L_9194600_SNP [dm6]	G	A	9.150e^-5	0.501	INTERGENIC
2L	21838288	2L_21838288_SNP [dm3] 2L_21838288_SNP [dm6]	G	C	9.160e^-5	0.501	INTERGENIC
3R	6415872	3R_6415872_SNP [dm3] 3R_10590150_SNP [dm6]	C	T	9.193e^-5	0.501	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20295552	2L_20295552_SNP [dm3] 2L_20295552_SNP [dm6]	T	G	9.202e^-5	0.501	UTR_3_PRIME CG12617 DOWNSTREAM CG12617
2L	9178410	2L_9178410_SNP [dm3] 2L_9178410_SNP [dm6]	T	C	9.211e^-5	0.501	INTRON tai	TF binding site mE1_TFBS_Trl
3R	24953970	3R_24953970_SNP [dm3] 3R_29128248_SNP [dm6]	A	G	9.235e^-5	0.501	DOWNSTREAM dgt6 & 1 other INTERGENIC
3R	23783183	3R_23783183_SNP [dm3] 3R_27957461_SNP [dm6]	G	A	9.243e^-5	0.501	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad
X	16511641	X_16511641_SNP [dm3] X_16617608_SNP [dm6]	T	A	9.269e^-5	0.501	INTRON CG9782
3L	12825016	3L_12825016_SNP [dm3] 3L_12831916_SNP [dm6]	G	A	9.350e^-5	0.501	SYNONYMOUS_CODING CG10960 INTRON CG10960	TF binding site mE1_TFBS_Trl
3R	26120397	3R_26120397_SNP [dm3] 3R_30294675_SNP [dm6]	A	T	9.375e^-5	0.501	INTRON hdc
3R	10796724	3R_10796724_SNP [dm3] 3R_14971002_SNP [dm6]	C	T	9.397e^-5	0.501	INTERGENIC
3R	23825239	3R_23825239_SNP [dm3] 3R_27999517_SNP [dm6]	G	C	9.412e^-5	0.501	INTERGENIC
3L	6490417	3L_6490417_SNP [dm3] 3L_6497317_SNP [dm6]	T	C	9.447e^-5	0.501	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
X	4806683	X_4806683_SNP [dm3] X_4912650_SNP [dm6]	A	C	9.464e^-5	0.501	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20295000	2L_20295000_SNP [dm3] 2L_20295000_SNP [dm6]	T	C	9.526e^-5	0.501	NON_SYNONYMOUS_CODING CG12617
3L	10421257	3L_10421257_SNP [dm3] 3L_10428157_SNP [dm6]	A	G	9.568e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	2799791	3R_2799791_SNP [dm3] 3R_6974069_SNP [dm6]	T	C	9.599e^-5	0.501	INTRON Antp	TF binding site mE1_TFBS_bab1
3L	9870558	3L_9870558_SNP [dm3] 3L_9877458_SNP [dm6]	C	G	9.639e^-5	0.501	INTERGENIC
2L	21888870	2L_21888870_SNP [dm3] 2L_21888870_SNP [dm6]	A	T	9.644e^-5	0.501	DOWNSTREAM CR45362 INTERGENIC
2L	22059613	2L_22059613_SNP [dm3] 2L_22059613_SNP [dm6]	T	G	9.656e^-5	0.501	INTERGENIC
2L	22261807	2L_22261807_SNP [dm3] 2L_22261807_SNP [dm6]	T	G	9.672e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	10666605	3L_10666605_SNP [dm3] 3L_10673505_SNP [dm6]	C	T	9.738e^-5	0.501	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6195576	X_6195576_SNP [dm3] X_6301543_SNP [dm6]	G	A	9.772e^-5	0.501	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	20390967	2L_20390967_SNP [dm3] 2L_20390967_SNP [dm6]	G	A	9.773e^-5	0.501	INTRON CG10947
2L	21933019	2L_21933019_SNP [dm3] 2L_21933019_SNP [dm6]	G	T	9.778e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20366975	3R_20366975_INS [dm3] 3R_24541253_INS [dm6]	T	TG	9.810e^-5	0.501	SPLICE_SITE_REGION CG5789 INTRON CG5789	TF binding site BDTNP1_TFBS_twi
2R	6239955	2R_6239955_SNP [dm3] 2R_10352450_SNP [dm6]	A	C	9.833e^-5	0.501	UPSTREAM CG43172 & 2 others DOWNSTREAM CG43171 & 2 others INTRON CG42732
3R	4035360	3R_4035360_SNP [dm3] 3R_8209638_SNP [dm6]	A	T	9.850e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	5113299	2L_5113299_SNP [dm3] 2L_5113299_SNP [dm6]	A	T	9.883e^-5	0.501	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11756901	2L_11756901_INS [dm3] 2L_11756901_INS [dm6]	C	CCACAC	9.894e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24876990	3R_24876990_SNP [dm3] 3R_29051268_SNP [dm6]	T	C	9.910e^-5	0.501	SYNONYMOUS_CODING CG11841 DOWNSTREAM CG11837	TF binding site mE1_TFBS_cad
3R	885298	3R_885298_SNP [dm3] 3R_5059576_SNP [dm6]	C	T	9.973e^-5	0.501	INTERGENIC
3R	803929	3R_803929_SNP [dm3] 3R_4978207_SNP [dm6]	A	T	9.979e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	11443062	3L_11443062_SNP [dm3] 3L_11449962_SNP [dm6]	T	A	9.987e^-5	0.501	INTERGENIC
3L	9832155	3L_9832155_SNP [dm3] 3L_9839055_SNP [dm6]	C	T	9.997e^-5	0.501	UPSTREAM Cdk8 DOWNSTREAM RasGAP1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	11646105	3R_11646105_SNP [dm3] 3R_15820383_SNP [dm6]	C	T	1.003e^-4	0.501	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7068634	X_7068634_SNP [dm3] X_7174601_SNP [dm6]	A	T	1.004e^-4	0.501	INTRON CG9650 & 1 other
2L	21954740	2L_21954740_SNP [dm3] 2L_21954740_SNP [dm6]	G	T	1.009e^-4	0.501	INTERGENIC
2R	19583452	2R_19583452_SNP [dm3] 2R_23695929_SNP [dm6]	G	C	1.010e^-4	0.501	NON_SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6396887	2L_6396887_SNP [dm3] 2L_6396887_SNP [dm6]	G	T	1.014e^-4	0.501	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21980699	2L_21980699_SNP [dm3] 2L_21980699_SNP [dm6]	G	T	1.017e^-4	0.501	DOWNSTREAM CG2528 INTERGENIC
2L	752505	2L_752505_SNP [dm3] 2L_752505_SNP [dm6]	A	G	1.018e^-4	0.501	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	17233897	3L_17233897_SNP [dm3] 3L_17240797_SNP [dm6]	A	G	1.020e^-4	0.501	SYNONYMOUS_CODING CG6512	TF binding site mE1_TFBS_cad
X	3319584	X_3319584_DEL [dm3] X_3425551_DEL [dm6]	GATGTGG	G	1.021e^-4	0.501	INTRON CR44999 & 1 other
2L	10299977	2L_10299977_SNP [dm3] 2L_10299977_SNP [dm6]	A	G	1.022e^-4	0.501	UTR_3_PRIME CG13138 UPSTREAM CYLD DOWNSTREAM CG13138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22017629	2L_22017629_SNP [dm3] 2L_22017629_SNP [dm6]	G	A	1.023e^-4	0.501	DOWNSTREAM CG31693 INTERGENIC
3R	6407514	3R_6407514_SNP [dm3] 3R_10581792_SNP [dm6]	T	A	1.024e^-4	0.501	UTR_3_PRIME hth DOWNSTREAM hth INTRON hth
3L	16727078	3L_16727078_INS [dm3] 3L_16733978_INS [dm6]	A	AA	1.026e^-4	0.501	INTRON CG9701
2R	12856904	2R_12856904_SNP [dm3] 2R_16969399_SNP [dm6]	G	C	1.029e^-4	0.501	EXON CR44377
3R	4036939	3R_4036939_SNP [dm3] 3R_8211217_SNP [dm6]	A	T	1.039e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_sens
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.040e^-4	0.501	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
2L	21991889	2L_21991889_SNP [dm3] 2L_21991889_SNP [dm6]	G	C	1.041e^-4	0.501	NON_SYNONYMOUS_CODING CG2528	TF binding site mE1_TFBS_HSA
2L	21997891	2L_21997891_SNP [dm3] 2L_21997891_SNP [dm6]	T	G	1.045e^-4	0.501	INTERGENIC	transposable element FlyBase
2R	11809915	2R_11809915_SNP [dm3] 2R_15922410_SNP [dm6]	A	T	1.049e^-4	0.501	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14960371	3R_14960371_SNP [dm3] 3R_19134649_SNP [dm6]	C	A	1.053e^-4	0.501	UTR_3_PRIME Cyp12a5 UPSTREAM Cyp12a4
X	9577487	X_9577487_SNP [dm3] X_9683454_SNP [dm6]	C	T	1.053e^-4	0.501	UTR_5_PRIME nej	TF binding site BDTNP1_TFBS_dl
2R	13449198	2R_13449198_SNP [dm3] 2R_17561693_SNP [dm6]	G	T	1.055e^-4	0.501	SPLICE_SITE_REGION Klp54D INTRON Klp54D
3R	14092066	3R_14092066_SNP [dm3] 3R_18266344_SNP [dm6]	T	A	1.056e^-4	0.501	INTERGENIC
2L	10062664	2L_10062664_SNP [dm3] 2L_10062664_SNP [dm6]	A	G	1.058e^-4	0.501	SYNONYMOUS_CODING Spn31A
3R	15375274	3R_15375274_SNP [dm3] 3R_19549552_SNP [dm6]	A	G	1.059e^-4	0.501	INTRON Dys
3R	4243195	3R_4243195_SNP [dm3] 3R_8417473_SNP [dm6]	G	T	1.059e^-4	0.501	INTRON CG45263
2R	11809925	2R_11809925_SNP [dm3] 2R_15922420_SNP [dm6]	T	A	1.061e^-4	0.501	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	21860997	2L_21860997_SNP [dm3] 2L_21860997_SNP [dm6]	C	T	1.063e^-4	0.501	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22004332	2L_22004332_SNP [dm3] 2L_22004332_SNP [dm6]	C	T	1.066e^-4	0.501	INTERGENIC	transposable element FlyBase
2L	21960786	2L_21960786_SNP [dm3] 2L_21960786_SNP [dm6]	T	C	1.066e^-4	0.501	UPSTREAM CR44804 INTERGENIC
2L	21972623	2L_21972623_SNP [dm3] 2L_21972623_SNP [dm6]	C	T	1.066e^-4	0.501	INTERGENIC
2L	22014904	2L_22014904_SNP [dm3] 2L_22014904_SNP [dm6]	T	C	1.066e^-4	0.501	UPSTREAM CG31693 INTERGENIC	transposable element FlyBase
3R	16443723	3R_16443723_SNP [dm3] 3R_20618001_SNP [dm6]	G	A	1.069e^-4	0.501	UTR_5_PRIME CG5466	TF binding site mE1_TFBS_chinmo
X	9474538	X_9474538_SNP [dm3] X_9580505_SNP [dm6]	T	C	1.072e^-4	0.501	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11622361	3R_11622361_SNP [dm3] 3R_15796639_SNP [dm6]	C	T	1.077e^-4	0.502	NON_SYNONYMOUS_CODING nsl1	TF binding site mE1_TFBS_chinmo
2L	21963935	2L_21963935_SNP [dm3] 2L_21963935_SNP [dm6]	T	A	1.085e^-4	0.504	INTERGENIC
3L	19838438	3L_19838438_DEL [dm3] 3L_19845338_DEL [dm6]	AATTTAAAC	A	1.086e^-4	0.504	UTR_5_PRIME Papss DOWNSTREAM kto	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2587868	2L_2587868_DEL [dm3] 2L_2587868_DEL [dm6]	TTGCCCCTTTGCAATTCCCG...	T	1.088e^-4	0.504	INTERGENIC
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	1.093e^-4	0.505	INTERGENIC
2L	6102211	2L_6102211_SNP [dm3] 2L_6102211_SNP [dm6]	C	G	1.095e^-4	0.505	INTRON stai
3R	17000503	3R_17000503_SNP [dm3] 3R_21174781_SNP [dm6]	G	A	1.102e^-4	0.505	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7068677	X_7068677_SNP [dm3] X_7174644_SNP [dm6]	A	C	1.103e^-4	0.505	INTRON CG9650 & 1 other
3R	10214190	3R_10214190_SNP [dm3] 3R_14388468_SNP [dm6]	G	A	1.103e^-4	0.505	INTERGENIC
3R	10796692	3R_10796692_SNP [dm3] 3R_14970970_SNP [dm6]	A	C	1.107e^-4	0.505	INTERGENIC
3R	420824	3R_420824_SNP [dm3] 3R_4595102_SNP [dm6]	T	G	1.109e^-4	0.505	INTERGENIC
2L	22004236	2L_22004236_SNP [dm3] 2L_22004236_SNP [dm6]	A	T	1.112e^-4	0.505	INTERGENIC
2L	14321632	2L_14321632_SNP [dm3] 2L_14321632_SNP [dm6]	A	T	1.115e^-4	0.505	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	1081627	2L_1081627_SNP [dm3] 2L_1081627_SNP [dm6]	T	C	1.120e^-4	0.505	SYNONYMOUS_CODING Atg4a DOWNSTREAM ast
3R	16028114	3R_16028114_SNP [dm3] 3R_20202392_SNP [dm6]	T	C	1.121e^-4	0.505	INTERGENIC
2R	11809910	2R_11809910_SNP [dm3] 2R_15922405_SNP [dm6]	C	T	1.124e^-4	0.506	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
X	4807404	X_4807404_SNP [dm3] X_4913371_SNP [dm6]	A	G	1.128e^-4	0.506	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14239785	X_14239785_SNP [dm3] X_14345752_SNP [dm6]	C	T	1.131e^-4	0.506	INTRON dpr8
2L	14285817	2L_14285817_SNP [dm3] 2L_14285817_SNP [dm6]	T	C	1.134e^-4	0.506	INTRON wb
2L	21865905	2L_21865905_SNP [dm3] 2L_21865905_SNP [dm6]	G	A	1.141e^-4	0.506	DOWNSTREAM CR44919 INTRON CR44917 EXON CR44918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2673515	3L_2673515_DEL [dm3] 3L_2673515_DEL [dm6]	CACC	C	1.144e^-4	0.506	INTRON Fife
3L	2772407	3L_2772407_SNP [dm3] 3L_2772407_SNP [dm6]	G	T	1.148e^-4	0.506	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2772413	3L_2772413_SNP [dm3] 3L_2772413_SNP [dm6]	G	A	1.148e^-4	0.506	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2772436	3L_2772436_SNP [dm3] 3L_2772436_SNP [dm6]	T	G	1.148e^-4	0.506	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7087136	3L_7087136_SNP [dm3] 3L_7094036_SNP [dm6]	T	G	1.150e^-4	0.506	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	1.155e^-4	0.507	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3L	10666718	3L_10666718_SNP [dm3] 3L_10673618_SNP [dm6]	G	A	1.156e^-4	0.507	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11809826	2R_11809826_SNP [dm3] 2R_15922321_SNP [dm6]	T	A	1.162e^-4	0.507	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
X	17855605	X_17855605_SNP [dm3] X_17961572_SNP [dm6]	A	G	1.165e^-4	0.507	INTRON Sh
3L	14818272	3L_14818272_SNP [dm3] 3L_14825172_SNP [dm6]	T	A	1.166e^-4	0.507	INTRON CG17839
2R	13349724	2R_13349724_SNP [dm3] 2R_17462219_SNP [dm6]	G	T	1.169e^-4	0.507	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14241990	X_14241990_SNP [dm3] X_14347957_SNP [dm6]	G	A	1.177e^-4	0.51	INTRON dpr8
2L	6606369	2L_6606369_SNP [dm3] 2L_6606369_SNP [dm6]	C	G	1.183e^-4	0.51	INTERGENIC
3R	3550136	3R_3550136_SNP [dm3] 3R_7724414_SNP [dm6]	T	A	1.183e^-4	0.51	UTR_3_PRIME CG2616	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4402428	2L_4402428_SNP [dm3] 2L_4402428_SNP [dm6]	C	T	1.186e^-4	0.51	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13149241	X_13149241_SNP [dm3] X_13255208_SNP [dm6]	G	T	1.190e^-4	0.511	INTRON mew
2L	22140711	2L_22140711_INS [dm3] 2L_22140711_INS [dm6]	T	TT	1.194e^-4	0.511	SPLICE_SITE_REGION CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4270203	3L_4270203_SNP [dm3] 3L_4270203_SNP [dm6]	G	A	1.195e^-4	0.511	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22601974	3L_22601974_SNP [dm3] 3L_22608874_SNP [dm6]	G	A	1.200e^-4	0.511	INTRON CG14459
X	592176	X_592176_SNP [dm3] X_698143_SNP [dm6]	A	G	1.202e^-4	0.511	INTRON sdk
3L	2705274	3L_2705274_SNP [dm3] 3L_2705274_SNP [dm6]	A	G	1.211e^-4	0.514	INTRON Fife
X	5050141	X_5050141_SNP [dm3] X_5156108_SNP [dm6]	T	G	1.236e^-4	0.52	INTRON rg & 1 other
3R	19176120	3R_19176120_SNP [dm3] 3R_23350398_SNP [dm6]	C	G	1.236e^-4	0.52	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17908266	3R_17908266_SNP [dm3] 3R_22082544_SNP [dm6]	A	T	1.244e^-4	0.52	INTRON CG13408
2L	7900729	2L_7900729_SNP [dm3] 2L_7900729_SNP [dm6]	T	C	1.248e^-4	0.52	INTRON Snoo
2L	21954012	2L_21954012_SNP [dm3] 2L_21954012_SNP [dm6]	T	A	1.249e^-4	0.52	INTERGENIC
X	6953539	X_6953539_INS [dm3] X_7059506_INS [dm6]	A	AAATAC	1.250e^-4	0.52	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3R	14765577	3R_14765577_SNP [dm3] 3R_18939855_SNP [dm6]	A	T	1.251e^-4	0.52	INTRON CG42613
3R	14765580	3R_14765580_SNP [dm3] 3R_18939858_SNP [dm6]	C	T	1.251e^-4	0.52	INTRON CG42613
2L	12548639	2L_12548639_SNP [dm3] 2L_12548639_SNP [dm6]	T	G	1.257e^-4	0.52	INTERGENIC
2L	11935792	2L_11935792_SNP [dm3] 2L_11935792_SNP [dm6]	T	C	1.262e^-4	0.52	UPSTREAM Or33b DOWNSTREAM Or33a INTERGENIC
X	16767362	X_16767362_DEL [dm3] X_16873329_DEL [dm6]	AA	A	1.263e^-4	0.52	INTRON CG13003
3R	6942293	3R_6942293_SNP [dm3] 3R_11116571_SNP [dm6]	C	T	1.263e^-4	0.52	UPSTREAM CG6629 INTERGENIC
3L	7300153	3L_7300153_SNP [dm3] 3L_7307053_SNP [dm6]	G	A	1.266e^-4	0.52	INTRON unc-13-4A
3R	1949755	3R_1949755_SNP [dm3] 3R_6124033_SNP [dm6]	G	A	1.266e^-4	0.52	UTR_3_PRIME Vha14-2 DOWNSTREAM Vha14-2
2L	18105064	2L_18105064_INS [dm3] 2L_18105064_INS [dm6]	A	AC	1.268e^-4	0.52	INTERGENIC
X	5966935	X_5966935_SNP [dm3] X_6072902_SNP [dm6]	A	C	1.271e^-4	0.52	UTR_5_PRIME Tsp5D INTRON Tsp5D	TF binding site mE1_TFBS_HSA
2R	14589138	2R_14589138_SNP [dm3] 2R_18701633_SNP [dm6]	T	A	1.285e^-4	0.524	UTR_3_PRIME Sik3 INTRON Sik3
3R	14330644	3R_14330644_SNP [dm3] 3R_18504922_SNP [dm6]	A	G	1.287e^-4	0.524	UPSTREAM fru INTRON fru
X	3983424	X_3983424_SNP [dm3] X_4089391_SNP [dm6]	G	A	1.289e^-4	0.524	INTRON CG43689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17908267	3R_17908267_SNP [dm3] 3R_22082545_SNP [dm6]	T	A	1.301e^-4	0.527	INTRON CG13408
3R	5385805	3R_5385805_SNP [dm3] 3R_9560083_SNP [dm6]	G	A	1.301e^-4	0.527	UPSTREAM AP-1mu INTRON MBD-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
2L	22085872	2L_22085872_SNP [dm3] 2L_22085872_SNP [dm6]	T	A	1.315e^-4	0.53	INTERGENIC
3R	25379576	3R_25379576_INS [dm3] 3R_29553854_INS [dm6]	C	CAC	1.317e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	15615004	3R_15615004_SNP [dm3] 3R_19789282_SNP [dm6]	C	G	1.320e^-4	0.53	UPSTREAM tRNA:V3b:92Bb INTERGENIC
3R	15822999	3R_15822999_SNP [dm3] 3R_19997277_SNP [dm6]	C	T	1.321e^-4	0.53	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10796755	3R_10796755_SNP [dm3] 3R_14971033_SNP [dm6]	C	T	1.323e^-4	0.53	INTERGENIC
3R	10184412	3R_10184412_SNP [dm3] 3R_14358690_SNP [dm6]	A	G	1.339e^-4	0.532	SYNONYMOUS_CODING CG31320 INTRON NK7.1	TF binding site mE1_TFBS_sbb
3R	15303099	3R_15303099_DEL [dm3] 3R_19477377_DEL [dm6]	AGAGT	A	1.343e^-4	0.532	INTRON Dys
3R	15303107	3R_15303107_INS [dm3] 3R_19477385_INS [dm6]	T	TA	1.343e^-4	0.532	INTRON Dys
3R	15303109	3R_15303109_SNP [dm3] 3R_19477387_SNP [dm6]	T	A	1.343e^-4	0.532	INTRON Dys
3R	11600118	3R_11600118_SNP [dm3] 3R_15774396_SNP [dm6]	G	T	1.346e^-4	0.532	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
2L	10827151	2L_10827151_SNP [dm3] 2L_10827151_SNP [dm6]	C	T	1.346e^-4	0.532	UPSTREAM Nos INTRON Nos
2L	22040156	2L_22040156_SNP [dm3] 2L_22040156_SNP [dm6]	C	A	1.346e^-4	0.532	DOWNSTREAM CG41434 & 1 other INTERGENIC
3R	23782888	3R_23782888_SNP [dm3] 3R_27957166_SNP [dm6]	T	C	1.360e^-4	0.535	SYNONYMOUS_CODING CG5527 DOWNSTREAM CG42487 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13484536	3R_13484536_SNP [dm3] 3R_17658814_SNP [dm6]	G	A	1.364e^-4	0.535	UPSTREAM tRNA:CR31575 INTRON CG14322
3R	14084953	3R_14084953_SNP [dm3] 3R_18259231_SNP [dm6]	A	C	1.364e^-4	0.535	INTERGENIC	transposable element FlyBase
2L	6361807	2L_6361807_SNP [dm3] 2L_6361807_SNP [dm6]	T	A	1.372e^-4	0.537	DOWNSTREAM CR44778 INTERGENIC
3L	17237883	3L_17237883_SNP [dm3] 3L_17244783_SNP [dm6]	A	G	1.383e^-4	0.539	DOWNSTREAM CG7707 INTERGENIC
2R	12857150	2R_12857150_SNP [dm3] 2R_16969645_SNP [dm6]	C	A	1.383e^-4	0.539	EXON CR44377
X	14217087	X_14217087_SNP [dm3] X_14323054_SNP [dm6]	G	C	1.386e^-4	0.539	INTRON dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	21890945	2L_21890945_SNP [dm3] 2L_21890945_SNP [dm6]	G	A	1.395e^-4	0.542	EXON CR45362	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16941045	X_16941045_SNP [dm3] X_17047012_SNP [dm6]	T	C	1.408e^-4	0.545	INTRON CG45002
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	1.412e^-4	0.545	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11708755	2R_11708755_DEL [dm3] 2R_15821250_DEL [dm6]	AT	A	1.418e^-4	0.545	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12002771	3L_12002771_SNP [dm3] 3L_12009671_SNP [dm6]	C	A	1.419e^-4	0.545	SYNONYMOUS_CODING rols	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11665171	3R_11665171_SNP [dm3] 3R_15839449_SNP [dm6]	T	G	1.419e^-4	0.545	UTR_5_PRIME Pbp45 INTRON spn-E	TF binding site mE1_TFBS_cad
2L	17844333	2L_17844333_SNP [dm3] 2L_17844333_SNP [dm6]	C	T	1.422e^-4	0.545	UPSTREAM CadN2 INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	21961134	2L_21961134_SNP [dm3] 2L_21961134_SNP [dm6]	T	C	1.431e^-4	0.545	INTERGENIC
3L	5879695	3L_5879695_SNP [dm3] 3L_5886595_SNP [dm6]	C	A	1.431e^-4	0.545	INTERGENIC
X	13802859	X_13802859_SNP [dm3] X_13908826_SNP [dm6]	A	G	1.432e^-4	0.545	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	20359680	3R_20359680_SNP [dm3] 3R_24533958_SNP [dm6]	A	G	1.435e^-4	0.545	NON_SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_cad
2L	10112337	2L_10112337_SNP [dm3] 2L_10112337_SNP [dm6]	T	A	1.436e^-4	0.545	INTRON CG44153 & 1 other
3L	7058231	3L_7058231_SNP [dm3] 3L_7065131_SNP [dm6]	C	T	1.439e^-4	0.545	INTRON CG8641
X	11837673	X_11837673_SNP [dm3] X_11943640_SNP [dm6]	G	C	1.445e^-4	0.545	INTRON cac	TF binding site BDTNP1_TFBS_dl
3R	5710431	3R_5710431_SNP [dm3] 3R_9884709_SNP [dm6]	T	C	1.446e^-4	0.545	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	18993412	3R_18993412_SNP [dm3] 3R_23167690_SNP [dm6]	C	T	1.451e^-4	0.545	UPSTREAM Irk1 INTERGENIC
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	1.453e^-4	0.545	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	3964184	3R_3964184_SNP [dm3] 3R_8138462_SNP [dm6]	T	A	1.455e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20390311	2L_20390311_SNP [dm3] 2L_20390311_SNP [dm6]	C	G	1.457e^-4	0.545	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12689363	3L_12689363_SNP [dm3] 3L_12696263_SNP [dm6]	T	A	1.461e^-4	0.545	INTRON mirr	TF binding site BDTNP1_TFBS_dl
X	12814200	X_12814200_SNP [dm3] X_12920167_SNP [dm6]	G	A	1.461e^-4	0.545	INTRON fne
2L	9809585	2L_9809585_SNP [dm3] 2L_9809585_SNP [dm6]	C	T	1.465e^-4	0.545	INTRON nAChRalpha6
2L	20334278	2L_20334278_SNP [dm3] 2L_20334278_SNP [dm6]	A	T	1.475e^-4	0.548	INTRON spir
2L	13036091	2L_13036091_INS [dm3] 2L_13036091_INS [dm6]	T	TGGCCT	1.478e^-4	0.548	INTRON CG9932	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22052820	2L_22052820_SNP [dm3] 2L_22052820_SNP [dm6]	G	T	1.481e^-4	0.548	INTERGENIC
3R	10797536	3R_10797536_SNP [dm3] 3R_14971814_SNP [dm6]	T	A	1.486e^-4	0.548	INTERGENIC
3R	15823130	3R_15823130_SNP [dm3] 3R_19997408_SNP [dm6]	T	A	1.488e^-4	0.548	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12735407	3R_12735407_DEL [dm3] 3R_16909685_DEL [dm6]	AAA	A	1.490e^-4	0.548	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7886416	3R_7886416_SNP [dm3] 3R_12060694_SNP [dm6]	C	T	1.498e^-4	0.549	DOWNSTREAM CG14740 INTERGENIC
X	13059615	X_13059615_SNP [dm3] X_13165582_SNP [dm6]	T	C	1.501e^-4	0.549	INTRON CG34411
3R	12038404	3R_12038404_SNP [dm3] 3R_16212682_SNP [dm6]	T	G	1.504e^-4	0.549	UPSTREAM CR45642 INTERGENIC
2L	18105062	2L_18105062_INS [dm3] 2L_18105062_INS [dm6]	C	CA	1.505e^-4	0.549	INTERGENIC
3L	10725664	3L_10725664_SNP [dm3] 3L_10732564_SNP [dm6]	A	G	1.510e^-4	0.55	INTERGENIC
2R	11809768	2R_11809768_SNP [dm3] 2R_15922263_SNP [dm6]	A	C	1.524e^-4	0.551	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13247094	2L_13247094_SNP [dm3] 2L_13247094_SNP [dm6]	G	A	1.526e^-4	0.551	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5892081	X_5892081_SNP [dm3] X_5998048_SNP [dm6]	C	T	1.527e^-4	0.551	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl
2L	1084820	2L_1084820_SNP [dm3] 2L_1084820_SNP [dm6]	A	G	1.529e^-4	0.551	SYNONYMOUS_CODING CG4629 UTR_3_PRIME Atg4a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12598947	2L_12598947_SNP [dm3] 2L_12598947_SNP [dm6]	C	A	1.532e^-4	0.551	INTRON nub
2R	13532728	2R_13532728_SNP [dm3] 2R_17645223_SNP [dm6]	C	T	1.538e^-4	0.551	INTERGENIC
3R	21678482	3R_21678482_SNP [dm3] 3R_25852760_SNP [dm6]	T	G	1.546e^-4	0.551	INTRON CG5886
2R	12174607	2R_12174607_SNP [dm3] 2R_16287102_SNP [dm6]	T	A	1.554e^-4	0.551	SYNONYMOUS_CODING CG9068 UPSTREAM CR43728 DOWNSTREAM CG30324
3R	10386220	3R_10386220_SNP [dm3] 3R_14560498_SNP [dm6]	T	A	1.555e^-4	0.551	UPSTREAM CG14850 & 1 other INTERGENIC
2L	1382275	2L_1382275_SNP [dm3] 2L_1382275_SNP [dm6]	C	T	1.558e^-4	0.551	SYNONYMOUS_CODING lea UPSTREAM CR44898 EXON CR44897	TF binding site mE1_TFBS_cad
2L	22048717	2L_22048717_SNP [dm3] 2L_22048717_SNP [dm6]	C	T	1.559e^-4	0.551	INTERGENIC	transposable element FlyBase
3L	9922019	3L_9922019_SNP [dm3] 3L_9928919_SNP [dm6]	A	C	1.562e^-4	0.551	INTRON CG34356
2L	22101071	2L_22101071_SNP [dm3] 2L_22101071_SNP [dm6]	C	A	1.563e^-4	0.551	INTERGENIC
3R	10800520	3R_10800520_SNP [dm3] 3R_14974798_SNP [dm6]	C	T	1.567e^-4	0.551	INTERGENIC
X	14241014	X_14241014_SNP [dm3] X_14346981_SNP [dm6]	G	C	1.567e^-4	0.551	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10599241	3R_10599241_SNP [dm3] 3R_14773519_SNP [dm6]	T	C	1.570e^-4	0.551	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6398720	3R_6398720_SNP [dm3] 3R_10572998_SNP [dm6]	C	A	1.571e^-4	0.551	INTRON hth	TF binding site BDTNP1_TFBS_dl
3R	20359685	3R_20359685_SNP [dm3] 3R_24533963_SNP [dm6]	A	C	1.573e^-4	0.551	NON_SYNONYMOUS_CODING ana1
X	11497396	X_11497396_SNP [dm3] X_11603363_SNP [dm6]	A	T	1.574e^-4	0.551	NON_SYNONYMOUS_CODING CG2533 INTRON rho-4
2L	6121545	2L_6121545_SNP [dm3] 2L_6121545_SNP [dm6]	T	C	1.574e^-4	0.551	INTRON stai	TF binding site mE1_TFBS_inv
3R	14407723	3R_14407723_SNP [dm3] 3R_18582001_SNP [dm6]	G	A	1.574e^-4	0.551	INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl
3R	10797588	3R_10797588_SNP [dm3] 3R_14971866_SNP [dm6]	C	A	1.578e^-4	0.551	INTERGENIC
2R	11809936	2R_11809936_SNP [dm3] 2R_15922431_SNP [dm6]	T	C	1.582e^-4	0.552	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
X	14243657	X_14243657_SNP [dm3] X_14349624_SNP [dm6]	T	G	1.598e^-4	0.553	INTRON dpr8
3R	10797514	3R_10797514_SNP [dm3] 3R_14971792_SNP [dm6]	T	G	1.598e^-4	0.553	INTERGENIC
X	9704558	X_9704558_SNP [dm3] X_9810525_SNP [dm6]	T	C	1.600e^-4	0.553	INTRON CG32698
X	11837704	X_11837704_SNP [dm3] X_11943671_SNP [dm6]	T	A	1.600e^-4	0.553	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13414020	X_13414020_SNP [dm3] X_13519987_SNP [dm6]	G	C	1.605e^-4	0.553	DOWNSTREAM Neto INTRON Neto
2R	2819754	2R_2819754_SNP [dm3] 2R_6932249_SNP [dm6]	G	A	1.610e^-4	0.553	SYNONYMOUS_CODING mim INTRON mim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10798226	3R_10798226_SNP [dm3] 3R_14972504_SNP [dm6]	T	C	1.614e^-4	0.553	INTERGENIC
3R	12470202	3R_12470202_SNP [dm3] 3R_16644480_SNP [dm6]	C	T	1.614e^-4	0.553	DOWNSTREAM CG10324 INTRON CG10326	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12226786	2L_12226786_SNP [dm3] 2L_12226786_SNP [dm6]	T	C	1.616e^-4	0.553	INTRON aret
3R	15815301	3R_15815301_SNP [dm3] 3R_19989579_SNP [dm6]	T	G	1.616e^-4	0.553	INTRON Hs6st
2L	22334737	2L_22334737_SNP [dm3] 2L_22334737_SNP [dm6]	G	T	1.624e^-4	0.553	INTRON CG17018	transposable element FlyBase
3R	814651	3R_814651_SNP [dm3] 3R_4988929_SNP [dm6]	G	T	1.624e^-4	0.553	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	21808415	2L_21808415_SNP [dm3] 2L_21808415_SNP [dm6]	T	C	1.626e^-4	0.553	INTERGENIC
2R	13449315	2R_13449315_SNP [dm3] 2R_17561810_SNP [dm6]	C	T	1.632e^-4	0.554	SYNONYMOUS_CODING Klp54D
X	20008140	X_20008140_SNP [dm3] X_20114107_SNP [dm6]	A	G	1.634e^-4	0.554	INTERGENIC
3R	11309215	3R_11309215_SNP [dm3] 3R_15483493_SNP [dm6]	C	T	1.638e^-4	0.554	SYNONYMOUS_CODING Rh6 DOWNSTREAM CG14870	TF binding site mE1_TFBS_chinmo
2L	21685839	2L_21685839_SNP [dm3] 2L_21685839_SNP [dm6]	C	T	1.645e^-4	0.554	INTRON CG31619
3R	13654186	3R_13654186_SNP [dm3] 3R_17828464_SNP [dm6]	C	A	1.652e^-4	0.554	INTRON tinc	TF binding site mE1_TFBS_cad
2L	21973254	2L_21973254_SNP [dm3] 2L_21973254_SNP [dm6]	A	G	1.654e^-4	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6397206	3R_6397206_SNP [dm3] 3R_10571484_SNP [dm6]	T	G	1.657e^-4	0.554	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15303078	3R_15303078_SNP [dm3] 3R_19477356_SNP [dm6]	A	T	1.657e^-4	0.554	INTRON Dys
2L	12226775	2L_12226775_SNP [dm3] 2L_12226775_SNP [dm6]	A	T	1.658e^-4	0.554	INTRON aret
3L	17231641	3L_17231641_SNP [dm3] 3L_17238541_SNP [dm6]	A	C	1.659e^-4	0.554	UPSTREAM Rbp6 DOWNSTREAM CG6512 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5699987	3R_5699987_DEL [dm3] 3R_9874265_DEL [dm6]	TT	T	1.661e^-4	0.554	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20293783	2L_20293783_SNP [dm3] 2L_20293783_SNP [dm6]	A	G	1.664e^-4	0.554	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	19517818	3R_19517818_SNP [dm3] 3R_23692096_SNP [dm6]	T	C	1.666e^-4	0.554	NON_SYNONYMOUS_CODING CG10254
3R	10797595	3R_10797595_SNP [dm3] 3R_14971873_SNP [dm6]	T	G	1.677e^-4	0.557	INTERGENIC
3L	5758649	3L_5758649_SNP [dm3] 3L_5765549_SNP [dm6]	T	G	1.686e^-4	0.557	UTR_5_PRIME CG10576 UPSTREAM Txl & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11250606	3L_11250606_SNP [dm3] 3L_11257506_SNP [dm6]	A	G	1.687e^-4	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15591942	X_15591942_SNP [dm3] X_15697909_SNP [dm6]	C	A	1.692e^-4	0.557	INTRON CG8128	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	16452801	3R_16452801_SNP [dm3] 3R_20627079_SNP [dm6]	C	G	1.693e^-4	0.557	UTR_3_PRIME H
3R	10656611	3R_10656611_SNP [dm3] 3R_14830889_SNP [dm6]	G	A	1.693e^-4	0.557	INTRON btsz
2L	10827170	2L_10827170_SNP [dm3] 2L_10827170_SNP [dm6]	G	A	1.699e^-4	0.558	UPSTREAM Nos INTRON Nos
2L	20292346	2L_20292346_SNP [dm3] 2L_20292346_SNP [dm6]	C	G	1.704e^-4	0.558	INTERGENIC
3L	6747999	3L_6747999_SNP [dm3] 3L_6754899_SNP [dm6]	G	T	1.705e^-4	0.558	UTR_3_PRIME CG10103 DOWNSTREAM CG8549 INTRON CG10103	TF binding site mE1_TFBS_cad
3L	13350356	3L_13350356_SNP [dm3] 3L_13357256_SNP [dm6]	T	A	1.716e^-4	0.561	DOWNSTREAM Nplp2 INTERGENIC
3L	10965088	3L_10965088_SNP [dm3] 3L_10971988_SNP [dm6]	T	G	1.729e^-4	0.563	UPSTREAM CG14147 INTERGENIC
2R	13449261	2R_13449261_SNP [dm3] 2R_17561756_SNP [dm6]	T	C	1.730e^-4	0.563	SYNONYMOUS_CODING Klp54D
2L	1081486	2L_1081486_SNP [dm3] 2L_1081486_SNP [dm6]	C	G	1.733e^-4	0.563	DOWNSTREAM ast INTRON Atg4a
2L	9100917	2L_9100917_SNP [dm3] 2L_9100917_SNP [dm6]	G	A	1.736e^-4	0.563	INTERGENIC
2L	21958866	2L_21958866_SNP [dm3] 2L_21958866_SNP [dm6]	C	T	1.739e^-4	0.563	DOWNSTREAM CR44217 & 1 other EXON CR44803
2R	13118539	2R_13118539_SNP [dm3] 2R_17231034_SNP [dm6]	C	T	1.740e^-4	0.563	INTRON mbl
X	7068278	X_7068278_SNP [dm3] X_7174245_SNP [dm6]	C	T	1.743e^-4	0.563	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	5879297	X_5879297_SNP [dm3] X_5985264_SNP [dm6]	G	A	1.750e^-4	0.563	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo
3L	8572328	3L_8572328_SNP [dm3] 3L_8579228_SNP [dm6]	G	C	1.750e^-4	0.563	INTRON CG43078	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	809555	3R_809555_SNP [dm3] 3R_4983833_SNP [dm6]	A	T	1.766e^-4	0.567	NON_SYNONYMOUS_CODING CG14662 DOWNSTREAM CR43424 EXON CR43478	TF binding site mE1_TFBS_sens
X	21455259	X_21455259_SNP [dm3] X_21584232_SNP [dm6]	A	G	1.770e^-4	0.568	EXON CR44711
3R	12479758	3R_12479758_SNP [dm3] 3R_16654036_SNP [dm6]	C	T	1.785e^-4	0.571	NON_SYNONYMOUS_CODING modSP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23194836	3R_23194836_SNP [dm3] 3R_27369114_SNP [dm6]	G	A	1.789e^-4	0.571	INTRON CG42534 EXON CR43476
2L	14376882	2L_14376882_SNP [dm3] 2L_14376882_SNP [dm6]	A	T	1.794e^-4	0.571	INTERGENIC
3R	17690052	3R_17690052_SNP [dm3] 3R_21864330_SNP [dm6]	C	T	1.800e^-4	0.571	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21891509	2L_21891509_SNP [dm3] 2L_21891509_SNP [dm6]	G	T	1.807e^-4	0.571	UPSTREAM CR45362 INTERGENIC
2L	5160287	2L_5160287_SNP [dm3] 2L_5160287_SNP [dm6]	T	A	1.811e^-4	0.571	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4967760	3L_4967760_SNP [dm3] 3L_4967760_SNP [dm6]	G	A	1.812e^-4	0.571	INTRON Con
2L	18450075	2L_18450075_SNP [dm3] 2L_18450075_SNP [dm6]	C	T	1.816e^-4	0.571	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21941322	2L_21941322_SNP [dm3] 2L_21941322_SNP [dm6]	G	A	1.816e^-4	0.571	INTERGENIC
3R	6361918	3R_6361918_SNP [dm3] 3R_10536196_SNP [dm6]	T	C	1.823e^-4	0.571	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7619393	3R_7619393_SNP [dm3] 3R_11793671_SNP [dm6]	G	T	1.823e^-4	0.571	INTRON Sbf	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9552840	3R_9552840_SNP [dm3] 3R_13727118_SNP [dm6]	T	C	1.823e^-4	0.571	INTRON CG34383
2L	14376878	2L_14376878_SNP [dm3] 2L_14376878_SNP [dm6]	T	C	1.826e^-4	0.571	INTERGENIC
X	7068557	X_7068557_SNP [dm3] X_7174524_SNP [dm6]	G	C	1.827e^-4	0.571	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA
2R	16435701	2R_16435701_SNP [dm3] 2R_20548196_SNP [dm6]	G	C	1.828e^-4	0.571	UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other INTRON Obp57e
3L	12830037	3L_12830037_SNP [dm3] 3L_12836937_SNP [dm6]	C	A	1.831e^-4	0.571	INTRON CG10960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16439568	3R_16439568_SNP [dm3] 3R_20613846_SNP [dm6]	A	T	1.852e^-4	0.577	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
X	20243053	X_20243053_SNP [dm3] X_20372026_SNP [dm6]	G	A	1.858e^-4	0.577	INTERGENIC
X	7065710	X_7065710_SNP [dm3] X_7171677_SNP [dm6]	T	A	1.858e^-4	0.577	INTRON CG9650 & 1 other
2R	11221499	2R_11221499_SNP [dm3] 2R_15333994_SNP [dm6]	C	G	1.865e^-4	0.577	INTRON Hr51	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6358638	2L_6358638_SNP [dm3] 2L_6358638_SNP [dm6]	G	A	1.870e^-4	0.577	UPSTREAM CG9500 EXON CR44777
3R	4026628	3R_4026628_SNP [dm3] 3R_8200906_SNP [dm6]	A	G	1.871e^-4	0.577	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
X	15104911	X_15104911_SNP [dm3] X_15210878_SNP [dm6]	T	C	1.872e^-4	0.577	SYNONYMOUS_CODING CG5662
2L	4402419	2L_4402419_SNP [dm3] 2L_4402419_SNP [dm6]	C	T	1.875e^-4	0.577	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7434859	3R_7434859_SNP [dm3] 3R_11609137_SNP [dm6]	G	T	1.876e^-4	0.577	INTRON Jupiter
2L	22063213	2L_22063213_SNP [dm3] 2L_22063213_SNP [dm6]	A	C	1.881e^-4	0.577	INTERGENIC
3L	9922201	3L_9922201_SNP [dm3] 3L_9929101_SNP [dm6]	G	T	1.887e^-4	0.577	INTRON CG34356
3R	17919868	3R_17919868_SNP [dm3] 3R_22094146_SNP [dm6]	A	T	1.888e^-4	0.577	INTRON CG5778	TF binding site mE1_TFBS_run
2L	22047890	2L_22047890_INS [dm3] 2L_22047890_INS [dm6]	C	CGTAC	1.893e^-4	0.577	INTERGENIC	TF binding site mE1_TFBS_kn
3L	4734509	3L_4734509_SNP [dm3] 3L_4734509_SNP [dm6]	A	T	1.893e^-4	0.577	INTRON RhoGEF64C
X	14393302	X_14393302_SNP [dm3] X_14499269_SNP [dm6]	T	C	1.896e^-4	0.577	INTERGENIC
X	14244026	X_14244026_SNP [dm3] X_14349993_SNP [dm6]	T	C	1.902e^-4	0.577	INTRON dpr8
3R	12093872	3R_12093872_SNP [dm3] 3R_16268150_SNP [dm6]	T	C	1.907e^-4	0.577	NON_SYNONYMOUS_CODING Mst89B DOWNSTREAM Mat89Ba	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	1.915e^-4	0.577	UPSTREAM CG6006 INTERGENIC
2R	10543261	2R_10543261_SNP [dm3] 2R_14655756_SNP [dm6]	T	C	1.915e^-4	0.577	INTERGENIC
X	3470715	X_3470715_SNP [dm3] X_3576682_SNP [dm6]	C	T	1.917e^-4	0.577	INTRON AstA-R1
3R	14407689	3R_14407689_SNP [dm3] 3R_18581967_SNP [dm6]	A	G	1.919e^-4	0.577	INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8847541	3L_8847541_SNP [dm3] 3L_8854441_SNP [dm6]	T	C	1.919e^-4	0.577	INTRON dally
3R	12873560	3R_12873560_SNP [dm3] 3R_17047838_SNP [dm6]	C	T	1.921e^-4	0.577	UTR_3_PRIME Patr-1 DOWNSTREAM Patr-1	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	22008201	2L_22008201_SNP [dm3] 2L_22008201_SNP [dm6]	C	T	1.924e^-4	0.577	INTERGENIC
2L	22009604	2L_22009604_SNP [dm3] 2L_22009604_SNP [dm6]	G	T	1.924e^-4	0.577	INTERGENIC	transposable element FlyBase
2L	6614279	2L_6614279_SNP [dm3] 2L_6614279_SNP [dm6]	T	C	1.928e^-4	0.577	INTRON CG11050
3R	18814117	3R_18814117_SNP [dm3] 3R_22988395_SNP [dm6]	G	A	1.937e^-4	0.578	SYNONYMOUS_CODING Or94a UPSTREAM Or94b INTRON Nha2
3R	18488865	3R_18488865_SNP [dm3] 3R_22663143_SNP [dm6]	A	G	1.949e^-4	0.58	INTRON CG45058
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	1.949e^-4	0.58	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4941405	3L_4941405_SNP [dm3] 3L_4941405_SNP [dm6]	A	G	1.959e^-4	0.581	INTRON Con
2L	14327063	2L_14327063_SNP [dm3] 2L_14327063_SNP [dm6]	A	G	1.960e^-4	0.581	DOWNSTREAM wb INTRON wb
3R	18253766	3R_18253766_SNP [dm3] 3R_22428044_SNP [dm6]	T	A	1.960e^-4	0.581	INTRON CG13847
X	8467667	X_8467667_SNP [dm3] X_8573634_SNP [dm6]	T	C	1.971e^-4	0.583	UPSTREAM spirit & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
X	6953591	X_6953591_SNP [dm3] X_7059558_SNP [dm6]	T	G	1.984e^-4	0.585	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3R	23083103	3R_23083103_SNP [dm3] 3R_27257381_SNP [dm6]	C	A	1.984e^-4	0.585	SYNONYMOUS_CODING woc DOWNSTREAM TfIIA-L
X	8467675	X_8467675_SNP [dm3] X_8573642_SNP [dm6]	G	A	1.992e^-4	0.586	UPSTREAM spirit & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
X	15994644	X_15994644_DEL [dm3] X_16100611_DEL [dm6]	AAACCTTAAGGCGTCTGACT...	A	1.993e^-4	0.586	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20919908	3R_20919908_DEL [dm3] 3R_25094186_DEL [dm6]	TATCC	T	2.006e^-4	0.587	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18993416	3R_18993416_SNP [dm3] 3R_23167694_SNP [dm6]	A	G	2.009e^-4	0.587	UPSTREAM Irk1 INTERGENIC
3R	10657240	3R_10657240_SNP [dm3] 3R_14831518_SNP [dm6]	G	A	2.014e^-4	0.587	INTRON btsz
3L	10146795	3L_10146795_SNP [dm3] 3L_10153695_SNP [dm6]	G	A	2.014e^-4	0.587	SYNONYMOUS_CODING dpr10 DOWNSTREAM CG8072 INTRON dpr10
3L	22601865	3L_22601865_SNP [dm3] 3L_22608765_SNP [dm6]	G	A	2.020e^-4	0.587	INTRON CG14459
2R	18692429	2R_18692429_SNP [dm3] 2R_22804924_SNP [dm6]	G	A	2.021e^-4	0.587	SYNONYMOUS_CODING CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2273734	3L_2273734_SNP [dm3] 3L_2273734_SNP [dm6]	T	C	2.024e^-4	0.587	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
2R	9496393	2R_9496393_SNP [dm3] 2R_13608888_SNP [dm6]	T	C	2.024e^-4	0.587	NON_SYNONYMOUS_CODING CG12464
3L	10725720	3L_10725720_INS [dm3] 3L_10732620_INS [dm6]	A	ACTGATTTGTA...	2.024e^-4	0.587	INTERGENIC
2L	2947935	2L_2947935_SNP [dm3] 2L_2947935_SNP [dm6]	C	T	2.030e^-4	0.588	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
3L	16746798	3L_16746798_SNP [dm3] 3L_16753698_SNP [dm6]	A	G	2.033e^-4	0.588	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11910657	2L_11910657_SNP [dm3] 2L_11910657_SNP [dm6]	G	A	2.040e^-4	0.589	INTRON Pde1c
3R	4362872	3R_4362872_SNP [dm3] 3R_8537150_SNP [dm6]	A	C	2.052e^-4	0.59	INTERGENIC
3R	16449387	3R_16449387_SNP [dm3] 3R_20623665_SNP [dm6]	C	G	2.052e^-4	0.59	INTRON H	TF binding site mE1_TFBS_HSA
3R	18488912	3R_18488912_SNP [dm3] 3R_22663190_SNP [dm6]	C	A	2.053e^-4	0.59	INTRON CG45058
2R	13118535	2R_13118535_SNP [dm3] 2R_17231030_SNP [dm6]	A	C	2.061e^-4	0.591	INTRON mbl
3R	18459971	3R_18459971_SNP [dm3] 3R_22634249_SNP [dm6]	G	A	2.066e^-4	0.592	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17438322	2L_17438322_SNP [dm3] 2L_17438322_SNP [dm6]	T	A	2.082e^-4	0.594	DOWNSTREAM dl INTRON dl
3R	20006700	3R_20006700_SNP [dm3] 3R_24180978_SNP [dm6]	C	T	2.084e^-4	0.594	UTR_3_PRIME CG13606 INTRON CG13606
3R	9265772	3R_9265772_SNP [dm3] 3R_13440050_SNP [dm6]	G	A	2.093e^-4	0.594	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10545967	2R_10545967_SNP [dm3] 2R_14658462_SNP [dm6]	G	A	2.094e^-4	0.594	SYNONYMOUS_CODING Adgf-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6398638	3R_6398638_SNP [dm3] 3R_10572916_SNP [dm6]	C	T	2.096e^-4	0.594	INTRON hth	TF binding site BDTNP1_TFBS_dl
2L	20287470	2L_20287470_SNP [dm3] 2L_20287470_SNP [dm6]	C	T	2.097e^-4	0.594	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18489534	3R_18489534_SNP [dm3] 3R_22663812_SNP [dm6]	G	A	2.098e^-4	0.594	INTRON CG45058
3L	2661599	3L_2661599_SNP [dm3] 3L_2661599_SNP [dm6]	G	A	2.107e^-4	0.595	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	24953660	3R_24953660_SNP [dm3] 3R_29127938_SNP [dm6]	C	T	2.108e^-4	0.595	UTR_3_PRIME CG11880 DOWNSTREAM dgt6
2L	22039174	2L_22039174_SNP [dm3] 2L_22039174_SNP [dm6]	C	T	2.114e^-4	0.595	SYNONYMOUS_CODING CG41434
2R	2743601	2R_2743601_SNP [dm3] 2R_6856096_SNP [dm6]	C	A	2.119e^-4	0.595	INTERGENIC
2R	14547211	2R_14547211_SNP [dm3] 2R_18659706_SNP [dm6]	A	G	2.120e^-4	0.595	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26895088	3R_26895088_SNP [dm3] 3R_31069366_SNP [dm6]	G	T	2.123e^-4	0.595	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4430407	2L_4430407_SNP [dm3] 2L_4430407_SNP [dm6]	G	A	2.128e^-4	0.595	INTRON CG15431
3R	13301422	3R_13301422_SNP [dm3] 3R_17475700_SNP [dm6]	A	G	2.129e^-4	0.595	SYNONYMOUS_CODING Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17438319	2L_17438319_SNP [dm3] 2L_17438319_SNP [dm6]	T	C	2.139e^-4	0.595	DOWNSTREAM dl INTRON dl
3R	24439901	3R_24439901_SNP [dm3] 3R_28614179_SNP [dm6]	G	A	2.142e^-4	0.595	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3990109	3R_3990109_SNP [dm3] 3R_8164387_SNP [dm6]	C	T	2.143e^-4	0.595	INTRON grn
2L	21952720	2L_21952720_SNP [dm3] 2L_21952720_SNP [dm6]	C	T	2.148e^-4	0.595	INTERGENIC
3R	18488878	3R_18488878_SNP [dm3] 3R_22663156_SNP [dm6]	A	G	2.149e^-4	0.595	INTRON CG45058
3R	23889887	3R_23889887_INS [dm3] 3R_28064165_INS [dm6]	T	CTTCTC	2.150e^-4	0.595	INTRON CG34362
2R	14637817	2R_14637817_SNP [dm3] 2R_18750312_SNP [dm6]	G	A	2.153e^-4	0.595	INTRON Hs3st-A
X	2471943	X_2471943_SNP [dm3] X_2577910_SNP [dm6]	C	A	2.155e^-4	0.595	UTR_3_PRIME Pdfr DOWNSTREAM Pdfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9831907	3L_9831907_SNP [dm3] 3L_9838807_SNP [dm6]	G	A	2.158e^-4	0.595	UPSTREAM Cdk8 DOWNSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	11443054	3L_11443054_SNP [dm3] 3L_11449954_SNP [dm6]	C	T	2.160e^-4	0.595	INTERGENIC
X	5581329	X_5581329_SNP [dm3] X_5687296_SNP [dm6]	C	A	2.161e^-4	0.595	NON_SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	7070088	X_7070088_DEL [dm3] X_7176055_DEL [dm6]	TCCCAAT	T	2.163e^-4	0.595	INTRON CG9650 & 1 other
3R	12876873	3R_12876873_SNP [dm3] 3R_17051151_SNP [dm6]	T	A	2.167e^-4	0.595	INTERGENIC
2L	10817584	2L_10817584_SNP [dm3] 2L_10817584_SNP [dm6]	C	T	2.168e^-4	0.595	INTRON Nos
3R	8289146	3R_8289146_SNP [dm3] 3R_12463424_SNP [dm6]	C	A	2.174e^-4	0.595	NON_SYNONYMOUS_CODING CG5608	TF binding site mE1_TFBS_inv
2L	14760576	2L_14760576_SNP [dm3] 2L_14760576_SNP [dm6]	G	C	2.179e^-4	0.595	UPSTREAM CG4691 INTERGENIC
X	14222817	X_14222817_SNP [dm3] X_14328784_SNP [dm6]	G	A	2.181e^-4	0.595	INTRON dpr8
3R	15334155	3R_15334155_SNP [dm3] 3R_19508433_SNP [dm6]	A	G	2.192e^-4	0.598	UPSTREAM Dys INTRON Dys
2L	12226755	2L_12226755_SNP [dm3] 2L_12226755_SNP [dm6]	A	G	2.196e^-4	0.598	INTRON aret
2R	13206019	2R_13206019_SNP [dm3] 2R_17318514_SNP [dm6]	C	T	2.204e^-4	0.599	INTRON mbl
3L	7276901	3L_7276901_SNP [dm3] 3L_7283801_SNP [dm6]	C	A	2.208e^-4	0.599	INTRON unc-13-4A
2R	10527786	2R_10527786_SNP [dm3] 2R_14640281_SNP [dm6]	A	C	2.216e^-4	0.6	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11443063	3L_11443063_DEL [dm3] 3L_11449963_DEL [dm6]	TTACCCTCAACC...	T	2.220e^-4	0.6	INTERGENIC
2L	12592136	2L_12592136_SNP [dm3] 2L_12592136_SNP [dm6]	T	C	2.222e^-4	0.6	INTRON nub
3R	17908276	3R_17908276_SNP [dm3] 3R_22082554_SNP [dm6]	C	T	2.223e^-4	0.6	INTRON CG13408
2L	21938529	2L_21938529_SNP [dm3] 2L_21938529_SNP [dm6]	T	A	2.233e^-4	0.601	INTERGENIC
2R	11542526	2R_11542526_SNP [dm3] 2R_15655021_SNP [dm6]	T	C	2.238e^-4	0.601	INTRON CG42524
3R	7393892	3R_7393892_SNP [dm3] 3R_11568170_SNP [dm6]	C	A	2.240e^-4	0.601	INTERGENIC
3L	1456943	3L_1456943_SNP [dm3] 3L_1456943_SNP [dm6]	A	G	2.241e^-4	0.601	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8159115	3R_8159115_SNP [dm3] 3R_12333393_SNP [dm6]	G	C	2.241e^-4	0.601	INTERGENIC
3R	3982045	3R_3982045_SNP [dm3] 3R_8156323_SNP [dm6]	C	T	2.246e^-4	0.601	INTRON grn
3R	24826640	3R_24826640_SNP [dm3] 3R_29000918_SNP [dm6]	C	A	2.249e^-4	0.601	INTRON wat
3L	8672782	3L_8672782_SNP [dm3] 3L_8679682_SNP [dm6]	A	G	2.252e^-4	0.601	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	15449583	3R_15449583_SNP [dm3] 3R_19623861_SNP [dm6]	T	G	2.259e^-4	0.601	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	10352365	X_10352365_SNP [dm3] X_10458332_SNP [dm6]	T	A	2.263e^-4	0.601	INTRON Or9a
2L	21938533	2L_21938533_SNP [dm3] 2L_21938533_SNP [dm6]	C	T	2.265e^-4	0.601	INTERGENIC
3R	5306374	3R_5306374_SNP [dm3] 3R_9480652_SNP [dm6]	T	C	2.268e^-4	0.601	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12830080	3L_12830080_SNP [dm3] 3L_12836980_SNP [dm6]	G	A	2.269e^-4	0.601	INTRON CG10960	TF binding site mE1_TFBS_HSA
X	18113229	X_18113229_INS [dm3] X_18219196_INS [dm6]	T	TGT	2.289e^-4	0.602	INTRON CG33639
X	8716384	X_8716384_SNP [dm3] X_8822351_SNP [dm6]	C	A	2.291e^-4	0.602	INTERGENIC
2R	16930298	2R_16930298_SNP [dm3] 2R_21042793_SNP [dm6]	G	A	2.292e^-4	0.602	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14963371	2R_14963371_SNP [dm3] 2R_19075866_SNP [dm6]	A	T	2.299e^-4	0.602	INTRON 5-HT1A
2L	3245214	2L_3245214_SNP [dm3] 2L_3245214_SNP [dm6]	C	A	2.301e^-4	0.602	INTERGENIC
2L	1200718	2L_1200718_SNP [dm3] 2L_1200718_SNP [dm6]	G	C	2.304e^-4	0.602	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2L	21879829	2L_21879829_SNP [dm3] 2L_21879829_SNP [dm6]	T	A	2.304e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	496616	X_496616_DEL [dm3] X_602583_DEL [dm6]	TAAGT	T	2.312e^-4	0.602	INTRON CG13366
3R	16442945	3R_16442945_SNP [dm3] 3R_20617223_SNP [dm6]	A	G	2.313e^-4	0.602	UPSTREAM CG5466 & 1 other INTERGENIC
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	2.317e^-4	0.602	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2L	5608195	2L_5608195_INS [dm3] 2L_5608195_INS [dm6]	C	CC	2.320e^-4	0.602	INTRON CG14010
3L	5953429	3L_5953429_SNP [dm3] 3L_5960329_SNP [dm6]	T	G	2.323e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14703879	X_14703879_SNP [dm3] X_14809846_SNP [dm6]	C	T	2.334e^-4	0.602	INTRON rut
3R	15334165	3R_15334165_SNP [dm3] 3R_19508443_SNP [dm6]	T	A	2.338e^-4	0.602	UPSTREAM Dys INTRON Dys
2L	12645756	2L_12645756_SNP [dm3] 2L_12645756_SNP [dm6]	A	G	2.343e^-4	0.602	INTRON Ref2
3L	12693766	3L_12693766_SNP [dm3] 3L_12700666_SNP [dm6]	C	G	2.345e^-4	0.602	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7857642	3L_7857642_SNP [dm3] 3L_7864542_SNP [dm6]	G	A	2.346e^-4	0.602	INTRON Pdp1
X	16765589	X_16765589_SNP [dm3] X_16871556_SNP [dm6]	C	T	2.348e^-4	0.602	INTRON CG13003
X	7068537	X_7068537_SNP [dm3] X_7174504_SNP [dm6]	T	C	2.349e^-4	0.602	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA
2R	13504560	2R_13504560_SNP [dm3] 2R_17617055_SNP [dm6]	G	T	2.349e^-4	0.602	UTR_3_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6737917	3L_6737917_SNP [dm3] 3L_6744817_SNP [dm6]	T	C	2.351e^-4	0.602	NON_SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9486612	2L_9486612_SNP [dm3] 2L_9486612_SNP [dm6]	C	G	2.357e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9822875	3L_9822875_SNP [dm3] 3L_9829775_SNP [dm6]	C	A	2.359e^-4	0.602	UTR_5_PRIME CG43897 INTRON CG43897
3R	6242957	3R_6242957_SNP [dm3] 3R_10417235_SNP [dm6]	A	C	2.361e^-4	0.602	INTERGENIC
2L	13227984	2L_13227984_SNP [dm3] 2L_13227984_SNP [dm6]	T	C	2.361e^-4	0.602	SYNONYMOUS_CODING CG16813	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23889832	3R_23889832_SNP [dm3] 3R_28064110_SNP [dm6]	C	A	2.362e^-4	0.602	INTRON CG34362
2L	14218889	2L_14218889_SNP [dm3] 2L_14218889_SNP [dm6]	A	G	2.362e^-4	0.602	INTRON Dyrk2
2L	1080227	2L_1080227_SNP [dm3] 2L_1080227_SNP [dm6]	C	T	2.364e^-4	0.602	SYNONYMOUS_CODING ast UPSTREAM Atg4a	TF binding site mE1_TFBS_sens
2R	4979516	2R_4979516_SNP [dm3] 2R_9092011_SNP [dm6]	T	G	2.371e^-4	0.602	UPSTREAM CG8080 DOWNSTREAM CG13741 INTRON CG8080
2R	12857184	2R_12857184_SNP [dm3] 2R_16969679_SNP [dm6]	T	C	2.372e^-4	0.602	EXON CR44377
2R	12687740	2R_12687740_SNP [dm3] 2R_16800235_SNP [dm6]	G	A	2.395e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10615056	3L_10615056_SNP [dm3] 3L_10621956_SNP [dm6]	C	T	2.398e^-4	0.602	INTERGENIC
3R	16442886	3R_16442886_INS [dm3] 3R_20617164_INS [dm6]	T	TT	2.399e^-4	0.602	UPSTREAM CG5466 & 1 other INTERGENIC
2L	21916154	2L_21916154_SNP [dm3] 2L_21916154_SNP [dm6]	G	C	2.406e^-4	0.602	UPSTREAM CG11634 & 1 other INTERGENIC
3R	10554632	3R_10554632_SNP [dm3] 3R_14728910_SNP [dm6]	T	A	2.411e^-4	0.602	UTR_5_PRIME CG7530 INTRON CG7530
3R	4699287	3R_4699287_SNP [dm3] 3R_8873565_SNP [dm6]	G	A	2.413e^-4	0.602	INTRON pyd	TF binding site mE1_TFBS_cad
3R	16309064	3R_16309064_SNP [dm3] 3R_20483342_SNP [dm6]	A	G	2.413e^-4	0.602	INTRON Gfrl
3R	11646060	3R_11646060_SNP [dm3] 3R_15820338_SNP [dm6]	G	C	2.415e^-4	0.602	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21905534	2L_21905534_SNP [dm3] 2L_21905534_SNP [dm6]	C	G	2.422e^-4	0.602	UPSTREAM CG1428 INTERGENIC
2L	6558515	2L_6558515_SNP [dm3] 2L_6558515_SNP [dm6]	C	T	2.425e^-4	0.602	SYNONYMOUS_CODING CoVb UPSTREAM CG11043 DOWNSTREAM CG9596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13231869	2L_13231869_SNP [dm3] 2L_13231869_SNP [dm6]	G	A	2.427e^-4	0.602	UPSTREAM Prosalpha6T INTERGENIC	TF binding site mE1_TFBS_cad
2L	22227555	2L_22227555_SNP [dm3] 2L_22227555_SNP [dm6]	G	T	2.434e^-4	0.602	DOWNSTREAM CR12628 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4204433	X_4204433_SNP [dm3] X_4310400_SNP [dm6]	C	A	2.437e^-4	0.602	DOWNSTREAM CG15579 INTERGENIC
3R	8222362	3R_8222362_SNP [dm3] 3R_12396640_SNP [dm6]	A	T	2.437e^-4	0.602	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3L	12435299	3L_12435299_SNP [dm3] 3L_12442199_SNP [dm6]	C	T	2.438e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	756112	2L_756112_SNP [dm3] 2L_756112_SNP [dm6]	T	G	2.438e^-4	0.602	INTRON GABA-B-R3
3L	17052651	3L_17052651_SNP [dm3] 3L_17059551_SNP [dm6]	A	C	2.441e^-4	0.602	UTR_3_PRIME Rbp6
2L	21942334	2L_21942334_DEL [dm3] 2L_21942334_DEL [dm6]	GG	G	2.442e^-4	0.602	INTERGENIC	transposable element FlyBase
3R	806915	3R_806915_SNP [dm3] 3R_4981193_SNP [dm6]	G	A	2.446e^-4	0.602	DOWNSTREAM CG14662 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20242757	2L_20242757_SNP [dm3] 2L_20242757_SNP [dm6]	A	T	2.447e^-4	0.602	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12273217	2L_12273217_SNP [dm3] 2L_12273217_SNP [dm6]	C	A	2.449e^-4	0.602	INTRON aret
2L	20219572	2L_20219572_SNP [dm3] 2L_20219572_SNP [dm6]	T	C	2.450e^-4	0.602	INTERGENIC	transposable element FlyBase
3R	7488490	3R_7488490_SNP [dm3] 3R_11662768_SNP [dm6]	T	C	2.450e^-4	0.602	INTRON CG42327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11199302	2L_11199302_SNP [dm3] 2L_11199302_SNP [dm6]	A	T	2.452e^-4	0.602	INTRON Ca-beta
3R	7899228	3R_7899228_SNP [dm3] 3R_12073506_SNP [dm6]	C	G	2.457e^-4	0.602	SYNONYMOUS_CODING CG14741
3R	14960612	3R_14960612_SNP [dm3] 3R_19134890_SNP [dm6]	C	T	2.459e^-4	0.602	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
X	14222910	X_14222910_SNP [dm3] X_14328877_SNP [dm6]	G	T	2.462e^-4	0.602	INTRON dpr8
3R	17908257	3R_17908257_SNP [dm3] 3R_22082535_SNP [dm6]	C	A	2.463e^-4	0.602	INTRON CG13408
2L	4719706	2L_4719706_SNP [dm3] 2L_4719706_SNP [dm6]	T	A	2.463e^-4	0.602	INTRON CG34351	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	11910595	2L_11910595_SNP [dm3] 2L_11910595_SNP [dm6]	A	C	2.463e^-4	0.602	INTRON Pde1c
3R	7616578	3R_7616578_SNP [dm3] 3R_11790856_SNP [dm6]	A	G	2.468e^-4	0.602	SYNONYMOUS_CODING Sbf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15334153	3R_15334153_SNP [dm3] 3R_19508431_SNP [dm6]	C	T	2.470e^-4	0.602	UPSTREAM Dys INTRON Dys
2L	1789026	2L_1789026_SNP [dm3] 2L_1789026_SNP [dm6]	G	T	2.477e^-4	0.602	DOWNSTREAM Gr22d INTERGENIC
2L	21625807	2L_21625807_SNP [dm3] 2L_21625807_SNP [dm6]	C	T	2.483e^-4	0.602	DOWNSTREAM Df31 & 1 other EXON CR43148
3L	10361391	3L_10361391_SNP [dm3] 3L_10368291_SNP [dm6]	G	A	2.487e^-4	0.602	DOWNSTREAM CR44327 INTERGENIC
3R	4663653	3R_4663653_SNP [dm3] 3R_8837931_SNP [dm6]	G	A	2.488e^-4	0.602	INTRON pyd	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	13349507	2R_13349507_SNP [dm3] 2R_17462002_SNP [dm6]	A	G	2.492e^-4	0.602	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9302561	3L_9302561_SNP [dm3] 3L_9309461_SNP [dm6]	T	A	2.492e^-4	0.602	INTERGENIC
3L	20433961	3L_20433961_SNP [dm3] 3L_20440861_SNP [dm6]	G	A	2.494e^-4	0.602	UPSTREAM CG11796 DOWNSTREAM CR45176 & 1 other INTERGENIC
3R	15639567	3R_15639567_SNP [dm3] 3R_19813845_SNP [dm6]	C	T	2.510e^-4	0.603	INTRON bnl
2R	14964580	2R_14964580_SNP [dm3] 2R_19077075_SNP [dm6]	C	T	2.513e^-4	0.603	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2R	14965135	2R_14965135_SNP [dm3] 2R_19077630_SNP [dm6]	C	T	2.513e^-4	0.603	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
3R	12485500	3R_12485500_SNP [dm3] 3R_16659778_SNP [dm6]	C	T	2.515e^-4	0.603	INTRON Ubx
2L	19357789	2L_19357789_SNP [dm3] 2L_19357789_SNP [dm6]	A	G	2.517e^-4	0.603	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18022595	2R_18022595_SNP [dm3] 2R_22135090_SNP [dm6]	C	G	2.517e^-4	0.603	INTERGENIC
2L	1200721	2L_1200721_SNP [dm3] 2L_1200721_SNP [dm6]	G	A	2.524e^-4	0.604	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3L	17232310	3L_17232310_SNP [dm3] 3L_17239210_SNP [dm6]	G	C	2.527e^-4	0.604	SYNONYMOUS_CODING CG6512 UPSTREAM Rbp6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8211502	2L_8211502_SNP [dm3] 2L_8211502_SNP [dm6]	T	C	2.530e^-4	0.604	SPLICE_SITE_REGION Ssb-c31a SYNONYMOUS_CODING Ssb-c31a UPSTREAM Su_var_205 DOWNSTREAM CG8372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12856342	2R_12856342_SNP [dm3] 2R_16968837_SNP [dm6]	A	T	2.541e^-4	0.606	UPSTREAM CR44377 DOWNSTREAM tRNA:G3:53E INTERGENIC
2L	13227993	2L_13227993_SNP [dm3] 2L_13227993_SNP [dm6]	C	T	2.549e^-4	0.607	SYNONYMOUS_CODING CG16813	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1200728	2L_1200728_SNP [dm3] 2L_1200728_SNP [dm6]	A	G	2.557e^-4	0.607	START_GAINED CG5011 UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
X	14240111	X_14240111_SNP [dm3] X_14346078_SNP [dm6]	G	A	2.559e^-4	0.607	INTRON dpr8
3R	13673851	3R_13673851_SNP [dm3] 3R_17848129_SNP [dm6]	T	C	2.561e^-4	0.607	INTRON tinc
2L	7900734	2L_7900734_SNP [dm3] 2L_7900734_SNP [dm6]	T	C	2.563e^-4	0.607	INTRON Snoo
3R	18723982	3R_18723982_SNP [dm3] 3R_22898260_SNP [dm6]	C	T	2.565e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11809927	2R_11809927_SNP [dm3] 2R_15922422_SNP [dm6]	A	T	2.569e^-4	0.607	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
X	13454244	X_13454244_SNP [dm3] X_13560211_SNP [dm6]	G	A	2.572e^-4	0.607	INTERGENIC
2L	2697489	2L_2697489_SNP [dm3] 2L_2697489_SNP [dm6]	C	G	2.582e^-4	0.607	INTRON CG31690
X	19671688	X_19671688_SNP [dm3] X_19777655_SNP [dm6]	C	T	2.585e^-4	0.607	SYNONYMOUS_CODING vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13250620	2L_13250620_SNP [dm3] 2L_13250620_SNP [dm6]	T	G	2.589e^-4	0.607	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC
3L	6145016	3L_6145016_SNP [dm3] 3L_6151916_SNP [dm6]	T	C	2.595e^-4	0.607	DOWNSTREAM Acp65Aa & 1 other INTERGENIC
X	644561	X_644561_SNP [dm3] X_750528_SNP [dm6]	G	A	2.596e^-4	0.607	SYNONYMOUS_CODING CG13362 UTR_5_PRIME CG5254
3R	11600107	3R_11600107_SNP [dm3] 3R_15774385_SNP [dm6]	G	A	2.601e^-4	0.607	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
3R	10214058	3R_10214058_SNP [dm3] 3R_14388336_SNP [dm6]	A	C	2.606e^-4	0.607	INTERGENIC
3R	24598352	3R_24598352_DEL [dm3] 3R_28772630_DEL [dm6]	AA	A	2.609e^-4	0.607	INTERGENIC
3R	12866173	3R_12866173_SNP [dm3] 3R_17040451_SNP [dm6]	T	C	2.612e^-4	0.607	UPSTREAM CG5220 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5212776	2R_5212776_SNP [dm3] 2R_9325271_SNP [dm6]	C	A	2.613e^-4	0.607	INTRON CG13954 & 1 other
2L	18450187	2L_18450187_SNP [dm3] 2L_18450187_SNP [dm6]	C	A	2.614e^-4	0.607	INTRON bsf	TF binding site mE1_TFBS_cad
3L	11442984	3L_11442984_SNP [dm3] 3L_11449884_SNP [dm6]	C	T	2.614e^-4	0.607	INTERGENIC
2L	5666802	2L_5666802_SNP [dm3] 2L_5666802_SNP [dm6]	G	C	2.616e^-4	0.607	INTRON Hsp60C
X	4806604	X_4806604_SNP [dm3] X_4912571_SNP [dm6]	T	C	2.622e^-4	0.608	INTRON CG32772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21454287	X_21454287_SNP [dm3] X_21583260_SNP [dm6]	T	C	2.629e^-4	0.608	UPSTREAM CR44711 INTERGENIC
2L	1359897	2L_1359897_SNP [dm3] 2L_1359897_SNP [dm6]	G	A	2.630e^-4	0.608	UTR_3_PRIME NLaz UPSTREAM CG31659 DOWNSTREAM NLaz
2L	6358438	2L_6358438_SNP [dm3] 2L_6358438_SNP [dm6]	T	C	2.646e^-4	0.61	UPSTREAM CG9500 DOWNSTREAM CR44777 EXON CR44777
3R	26943207	3R_26943207_SNP [dm3] 3R_31117485_SNP [dm6]	A	C	2.647e^-4	0.61	INTERGENIC
3R	13646813	3R_13646813_SNP [dm3] 3R_17821091_SNP [dm6]	T	A	2.650e^-4	0.61	INTRON tinc	TF binding site mE1_TFBS_HSA
2R	8930508	2R_8930508_SNP [dm3] 2R_13043003_SNP [dm6]	C	T	2.655e^-4	0.61	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	22045908	2L_22045908_SNP [dm3] 2L_22045908_SNP [dm6]	T	C	2.658e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu
2L	21941319	2L_21941319_SNP [dm3] 2L_21941319_SNP [dm6]	A	C	2.658e^-4	0.61	INTERGENIC
2R	16567104	2R_16567104_SNP [dm3] 2R_20679599_SNP [dm6]	A	G	2.664e^-4	0.61	INTERGENIC
2L	13247064	2L_13247064_SNP [dm3] 2L_13247064_SNP [dm6]	C	A	2.664e^-4	0.61	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18612960	3R_18612960_SNP [dm3] 3R_22787238_SNP [dm6]	A	C	2.672e^-4	0.61	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2995276	3L_2995276_SNP [dm3] 3L_2995276_SNP [dm6]	G	A	2.681e^-4	0.61	INTRON CG2113
3L	7083772	3L_7083772_SNP [dm3] 3L_7090672_SNP [dm6]	G	A	2.686e^-4	0.61	INTERGENIC
3L	18644578	3L_18644578_SNP [dm3] 3L_18651478_SNP [dm6]	G	A	2.690e^-4	0.61	INTRON MYPT-75D
2R	17512414	2R_17512414_SNP [dm3] 2R_21624909_SNP [dm6]	G	A	2.692e^-4	0.61	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10657484	3R_10657484_SNP [dm3] 3R_14831762_SNP [dm6]	G	C	2.694e^-4	0.61	INTRON btsz
3L	6899768	3L_6899768_SNP [dm3] 3L_6906668_SNP [dm6]	A	T	2.695e^-4	0.61	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17183508	2L_17183508_SNP [dm3] 2L_17183508_SNP [dm6]	T	C	2.696e^-4	0.61	SYNONYMOUS_CODING CG31750
2L	4402443	2L_4402443_SNP [dm3] 2L_4402443_SNP [dm6]	C	T	2.696e^-4	0.61	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3149304	3L_3149304_SNP [dm3] 3L_3149304_SNP [dm6]	A	G	2.699e^-4	0.61	UPSTREAM CG12082 INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12857301	2R_12857301_SNP [dm3] 2R_16969796_SNP [dm6]	G	T	2.702e^-4	0.61	EXON CR44377
3R	24890988	3R_24890988_SNP [dm3] 3R_29065266_SNP [dm6]	G	A	2.705e^-4	0.61	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5759701	3L_5759701_SNP [dm3] 3L_5766601_SNP [dm6]	T	C	2.715e^-4	0.611	SYNONYMOUS_CODING Txl UPSTREAM CG10576 DOWNSTREAM Ppat-Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	15216284	2L_15216284_SNP [dm3] 2L_15216284_SNP [dm6]	A	G	2.715e^-4	0.611	DOWNSTREAM CG43230 INTERGENIC
2L	12697942	2L_12697942_SNP [dm3] 2L_12697942_SNP [dm6]	T	C	2.723e^-4	0.612	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5154189	2L_5154189_SNP [dm3] 2L_5154189_SNP [dm6]	G	C	2.728e^-4	0.612	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	21816662	2L_21816662_SNP [dm3] 2L_21816662_SNP [dm6]	C	G	2.729e^-4	0.612	INTERGENIC
2R	11809861	2R_11809861_DEL [dm3] 2R_15922356_DEL [dm6]	TTTATAACT	T	2.733e^-4	0.612	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1194492	2L_1194492_SNP [dm3] 2L_1194492_SNP [dm6]	G	A	2.739e^-4	0.613	INTRON CG5001
2L	4718102	2L_4718102_SNP [dm3] 2L_4718102_SNP [dm6]	G	A	2.744e^-4	0.613	INTRON CG34351
3R	9416806	3R_9416806_SNP [dm3] 3R_13591084_SNP [dm6]	T	A	2.747e^-4	0.613	DOWNSTREAM CG14369 INTERGENIC
3R	24468645	3R_24468645_SNP [dm3] 3R_28642923_SNP [dm6]	C	G	2.748e^-4	0.613	UPSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13237061	2L_13237061_SNP [dm3] 2L_13237061_SNP [dm6]	C	A	2.758e^-4	0.613	INTRON CG5867
3L	1370381	3L_1370381_SNP [dm3] 3L_1370381_SNP [dm6]	C	T	2.758e^-4	0.613	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	7070497	X_7070497_SNP [dm3] X_7176464_SNP [dm6]	G	A	2.759e^-4	0.613	INTRON CG9650 & 1 other
3L	3569548	3L_3569548_SNP [dm3] 3L_3569548_SNP [dm6]	A	T	2.764e^-4	0.613	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13832712	2R_13832712_SNP [dm3] 2R_17945207_SNP [dm6]	G	A	2.768e^-4	0.613	INTERGENIC
X	7068476	X_7068476_SNP [dm3] X_7174443_SNP [dm6]	T	C	2.769e^-4	0.613	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	10338818	X_10338818_SNP [dm3] X_10444785_SNP [dm6]	A	C	2.772e^-4	0.613	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3L	8825177	3L_8825177_SNP [dm3] 3L_8832077_SNP [dm6]	A	C	2.774e^-4	0.613	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16993587	2R_16993587_SNP [dm3] 2R_21106082_SNP [dm6]	G	T	2.781e^-4	0.613	INTRON ktub
X	13453709	X_13453709_SNP [dm3] X_13559676_SNP [dm6]	T	G	2.785e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8280154	3R_8280154_SNP [dm3] 3R_12454432_SNP [dm6]	G	A	2.787e^-4	0.613	INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	6243818	2L_6243818_SNP [dm3] 2L_6243818_SNP [dm6]	G	A	2.787e^-4	0.613	INTERGENIC
3R	15628492	3R_15628492_SNP [dm3] 3R_19802770_SNP [dm6]	C	A	2.804e^-4	0.613	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12027794	2R_12027794_SNP [dm3] 2R_16140289_SNP [dm6]	A	G	2.805e^-4	0.613	INTRON Got1
2L	21928180	2L_21928180_SNP [dm3] 2L_21928180_SNP [dm6]	G	A	2.809e^-4	0.613	INTERGENIC	transposable element FlyBase
2L	21938882	2L_21938882_SNP [dm3] 2L_21938882_SNP [dm6]	A	G	2.810e^-4	0.613	INTERGENIC
2L	20383925	2L_20383925_DEL [dm3] 2L_20383925_DEL [dm6]	CCTCACAC	C	2.816e^-4	0.613	INTERGENIC
3R	2799320	3R_2799320_SNP [dm3] 3R_6973598_SNP [dm6]	G	C	2.818e^-4	0.613	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	9384462	X_9384462_SNP [dm3] X_9490429_SNP [dm6]	C	T	2.818e^-4	0.613	INTRON mgl
2R	12857134	2R_12857134_SNP [dm3] 2R_16969629_SNP [dm6]	A	C	2.820e^-4	0.613	EXON CR44377
2R	14961449	2R_14961449_SNP [dm3] 2R_19073944_SNP [dm6]	C	T	2.822e^-4	0.613	INTRON 5-HT1A
2L	22059619	2L_22059619_SNP [dm3] 2L_22059619_SNP [dm6]	A	T	2.822e^-4	0.613	INTERGENIC
3R	12875492	3R_12875492_SNP [dm3] 3R_17049770_SNP [dm6]	G	A	2.826e^-4	0.613	INTERGENIC
3L	4964826	3L_4964826_SNP [dm3] 3L_4964826_SNP [dm6]	C	T	2.833e^-4	0.613	INTRON Con
2L	21859012	2L_21859012_SNP [dm3] 2L_21859012_SNP [dm6]	T	C	2.834e^-4	0.613	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	15019480	2R_15019480_SNP [dm3] 2R_19131975_SNP [dm6]	G	A	2.838e^-4	0.613	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16767231	X_16767231_SNP [dm3] X_16873198_SNP [dm6]	A	T	2.842e^-4	0.613	INTRON CG13003
X	13930789	X_13930789_SNP [dm3] X_14036756_SNP [dm6]	T	G	2.849e^-4	0.613	INTERGENIC
3R	14960618	3R_14960618_SNP [dm3] 3R_19134896_SNP [dm6]	A	C	2.850e^-4	0.613	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
X	1571836	X_1571836_INS [dm3] X_1677803_INS [dm6]	C	CTA	2.853e^-4	0.613	INTRON CG32809
X	17488728	X_17488728_SNP [dm3] X_17594695_SNP [dm6]	T	C	2.861e^-4	0.613	INTRON CG12991
3L	10725688	3L_10725688_SNP [dm3] 3L_10732588_SNP [dm6]	G	T	2.866e^-4	0.613	INTERGENIC
X	4001635	X_4001635_DEL [dm3] X_4107602_DEL [dm6]	TTT	T	2.869e^-4	0.613	INTRON cib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24468544	3R_24468544_SNP [dm3] 3R_28642822_SNP [dm6]	C	G	2.877e^-4	0.613	INTRON CG14062	TF binding site mE1_TFBS_cad
X	6538816	X_6538816_SNP [dm3] X_6644783_SNP [dm6]	T	C	2.880e^-4	0.613	INTRON pigs
2L	13955605	2L_13955605_SNP [dm3] 2L_13955605_SNP [dm6]	T	C	2.880e^-4	0.613	UTR_3_PRIME Ance-3
2R	18684532	2R_18684532_DEL [dm3] 2R_22797027_DEL [dm6]	TT	T	2.881e^-4	0.613	UTR_5_PRIME CG42260	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14966044	2R_14966044_SNP [dm3] 2R_19078539_SNP [dm6]	G	C	2.882e^-4	0.613	INTRON 5-HT1A
2R	14434345	2R_14434345_SNP [dm3] 2R_18546840_SNP [dm6]	T	A	2.883e^-4	0.613	INTRON Rgk2
3R	24896751	3R_24896751_SNP [dm3] 3R_29071029_SNP [dm6]	A	T	2.883e^-4	0.613	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	21971502	2L_21971502_SNP [dm3] 2L_21971502_SNP [dm6]	A	G	2.884e^-4	0.613	INTERGENIC
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	2.885e^-4	0.613	INTRON grh	transposable element FlyBase
2R	17379042	2R_17379042_SNP [dm3] 2R_21491537_SNP [dm6]	G	A	2.895e^-4	0.614	INTRON Fkbp14
2R	14966122	2R_14966122_SNP [dm3] 2R_19078617_SNP [dm6]	G	A	2.907e^-4	0.614	INTRON 5-HT1A
3R	15636565	3R_15636565_SNP [dm3] 3R_19810843_SNP [dm6]	A	G	2.908e^-4	0.614	INTRON bnl
2L	22101088	2L_22101088_SNP [dm3] 2L_22101088_SNP [dm6]	A	T	2.909e^-4	0.614	INTERGENIC
3R	4003798	3R_4003798_SNP [dm3] 3R_8178076_SNP [dm6]	C	T	2.918e^-4	0.614	INTRON grn
2L	12698592	2L_12698592_SNP [dm3] 2L_12698592_SNP [dm6]	C	T	2.925e^-4	0.614	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21455498	X_21455498_INS [dm3] X_21584471_INS [dm6]	A	ACAGT	2.928e^-4	0.614	DOWNSTREAM CR44711 EXON CR44711
2L	6243809	2L_6243809_SNP [dm3] 2L_6243809_SNP [dm6]	C	T	2.929e^-4	0.614	INTERGENIC
2R	7596076	2R_7596076_SNP [dm3] 2R_11708571_SNP [dm6]	C	T	2.931e^-4	0.614	INTERGENIC
2R	12687741	2R_12687741_SNP [dm3] 2R_16800236_SNP [dm6]	C	A	2.931e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14462668	3R_14462668_SNP [dm3] 3R_18636946_SNP [dm6]	C	A	2.932e^-4	0.614	INTRON qin & 1 other
3R	16871883	3R_16871883_SNP [dm3] 3R_21046161_SNP [dm6]	G	T	2.934e^-4	0.614	NON_SYNONYMOUS_CODING CG31207 UPSTREAM CG31189
2L	13250925	2L_13250925_SNP [dm3] 2L_13250925_SNP [dm6]	A	T	2.938e^-4	0.614	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC
3L	10199152	3L_10199152_SNP [dm3] 3L_10206052_SNP [dm6]	G	A	2.938e^-4	0.614	EXON CR44538
3L	4971210	3L_4971210_SNP [dm3] 3L_4971210_SNP [dm6]	T	C	2.941e^-4	0.614	INTRON Con
X	10016990	X_10016990_SNP [dm3] X_10122957_SNP [dm6]	T	A	2.948e^-4	0.614	NON_SYNONYMOUS_CODING RhoU INTRON CR44894 EXON CR44894
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	2.950e^-4	0.614	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13156168	3L_13156168_SNP [dm3] 3L_13163068_SNP [dm6]	A	G	2.955e^-4	0.614	INTERGENIC
2R	4957703	2R_4957703_SNP [dm3] 2R_9070198_SNP [dm6]	G	A	2.955e^-4	0.614	INTRON ana
3L	6742463	3L_6742463_SNP [dm3] 3L_6749363_SNP [dm6]	G	T	2.957e^-4	0.614	SYNONYMOUS_CODING velo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17214595	2R_17214595_SNP [dm3] 2R_21327090_SNP [dm6]	G	T	2.961e^-4	0.614	DOWNSTREAM snoRNA:Psi28S-3316a & 1 other INTRON dom EXON snoRNA:Psi18S-841a
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	2.965e^-4	0.614	INTERGENIC
2R	4949825	2R_4949825_SNP [dm3] 2R_9062320_SNP [dm6]	A	G	2.966e^-4	0.614	START_GAINED ana UTR_5_PRIME ana UPSTREAM CG8197	regulatory region REDfly_CRMs
3R	6360473	3R_6360473_SNP [dm3] 3R_10534751_SNP [dm6]	C	G	2.969e^-4	0.614	INTRON hth
3L	11457816	3L_11457816_SNP [dm3] 3L_11464716_SNP [dm6]	C	T	2.978e^-4	0.614	NON_SYNONYMOUS_CODING CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20292345	2L_20292345_SNP [dm3] 2L_20292345_SNP [dm6]	C	T	2.981e^-4	0.614	INTERGENIC
X	7852711	X_7852711_SNP [dm3] X_7958678_SNP [dm6]	C	A	2.984e^-4	0.614	UPSTREAM CR45620 INTRON sws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9689223	2R_9689223_SNP [dm3] 2R_13801718_SNP [dm6]	G	C	2.988e^-4	0.614	INTRON Cpr50Cb
3R	8342670	3R_8342670_DEL [dm3] 3R_12516948_DEL [dm6]	CCGACTGCGC	C	2.990e^-4	0.614	CODON_DELETION Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12457987	3L_12457987_SNP [dm3] 3L_12464887_SNP [dm6]	A	G	3.002e^-4	0.614	SYNONYMOUS_CODING eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8930510	2R_8930510_SNP [dm3] 2R_13043005_SNP [dm6]	G	A	3.003e^-4	0.614	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	17396794	3R_17396794_SNP [dm3] 3R_21571072_SNP [dm6]	C	T	3.005e^-4	0.614	UTR_3_PRIME InR
X	16189720	X_16189720_SNP [dm3] X_16295687_SNP [dm6]	C	T	3.006e^-4	0.614	UPSTREAM CG3632 INTRON CG9911	TF binding site BDTNP1_TFBS_dl
X	9907359	X_9907359_SNP [dm3] X_10013326_SNP [dm6]	T	G	3.006e^-4	0.614	SYNONYMOUS_CODING CG2990	TF binding site mE1_TFBS_HSA
2L	22049559	2L_22049559_SNP [dm3] 2L_22049559_SNP [dm6]	T	C	3.007e^-4	0.614	INTERGENIC	transposable element FlyBase
2R	11809919	2R_11809919_SNP [dm3] 2R_15922414_SNP [dm6]	G	A	3.008e^-4	0.614	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4605679	3L_4605679_SNP [dm3] 3L_4605679_SNP [dm6]	C	T	3.011e^-4	0.614	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20597232	3R_20597232_SNP [dm3] 3R_24771510_SNP [dm6]	C	T	3.017e^-4	0.614	UPSTREAM CG42331 DOWNSTREAM CG13631 INTERGENIC
3L	10215594	3L_10215594_SNP [dm3] 3L_10222494_SNP [dm6]	C	T	3.028e^-4	0.616	INTRON scramb1
3R	7488476	3R_7488476_SNP [dm3] 3R_11662754_SNP [dm6]	T	C	3.034e^-4	0.616	INTRON CG42327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10207585	3R_10207585_SNP [dm3] 3R_14381863_SNP [dm6]	A	G	3.038e^-4	0.616	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8930502	2R_8930502_SNP [dm3] 2R_13042997_SNP [dm6]	A	G	3.042e^-4	0.616	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5204852	X_5204852_DEL [dm3] X_5310819_DEL [dm6]	TGAGT	T	3.045e^-4	0.616	UTR_3_PRIME TrxT DOWNSTREAM snf
2L	4402965	2L_4402965_SNP [dm3] 2L_4402965_SNP [dm6]	T	C	3.049e^-4	0.616	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_h
2L	22086836	2L_22086836_SNP [dm3] 2L_22086836_SNP [dm6]	G	A	3.053e^-4	0.616	INTERGENIC
X	16250012	X_16250012_SNP [dm3] X_16355979_SNP [dm6]	A	T	3.054e^-4	0.616	UTR_3_PRIME sl DOWNSTREAM U2af50	TF binding site BDTNP1_TFBS_dl
2L	15643968	2L_15643968_SNP [dm3] 2L_15643968_SNP [dm6]	T	C	3.057e^-4	0.616	DOWNSTREAM CG4587 INTERGENIC
3L	6585791	3L_6585791_SNP [dm3] 3L_6592691_SNP [dm6]	G	T	3.060e^-4	0.616	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2L	9101553	2L_9101553_SNP [dm3] 2L_9101553_SNP [dm6]	G	T	3.061e^-4	0.616	INTERGENIC
3L	3625703	3L_3625703_SNP [dm3] 3L_3625703_SNP [dm6]	A	C	3.064e^-4	0.616	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10338823	X_10338823_SNP [dm3] X_10444790_SNP [dm6]	T	A	3.073e^-4	0.616	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2L	18450117	2L_18450117_SNP [dm3] 2L_18450117_SNP [dm6]	C	T	3.078e^-4	0.616	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16767358	X_16767358_SNP [dm3] X_16873325_SNP [dm6]	G	C	3.078e^-4	0.616	INTRON CG13003
2L	22041393	2L_22041393_SNP [dm3] 2L_22041393_SNP [dm6]	C	T	3.086e^-4	0.616	SYNONYMOUS_CODING CG31601
3R	25531017	3R_25531017_SNP [dm3] 3R_29705295_SNP [dm6]	G	A	3.087e^-4	0.616	INTERGENIC
3L	10725700	3L_10725700_SNP [dm3] 3L_10732600_SNP [dm6]	T	A	3.090e^-4	0.616	INTERGENIC
2R	14963648	2R_14963648_SNP [dm3] 2R_19076143_SNP [dm6]	C	A	3.090e^-4	0.616	INTRON 5-HT1A
2L	13438838	2L_13438838_SNP [dm3] 2L_13438838_SNP [dm6]	T	C	3.091e^-4	0.616	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22091590	2L_22091590_SNP [dm3] 2L_22091590_SNP [dm6]	T	C	3.100e^-4	0.616	INTERGENIC
2R	4957557	2R_4957557_INS [dm3] 2R_9070052_INS [dm6]	G	GGGAATCG	3.104e^-4	0.616	INTRON ana	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	6612190	2L_6612190_SNP [dm3] 2L_6612190_SNP [dm6]	T	C	3.108e^-4	0.616	INTRON CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	16189750	X_16189750_SNP [dm3] X_16295717_SNP [dm6]	A	G	3.109e^-4	0.616	UPSTREAM CG3632 INTRON CG9911	TF binding site BDTNP1_TFBS_dl
3R	803930	3R_803930_SNP [dm3] 3R_4978208_SNP [dm6]	T	C	3.121e^-4	0.616	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10204496	3R_10204496_SNP [dm3] 3R_14378774_SNP [dm6]	G	C	3.122e^-4	0.616	INTERGENIC
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	3.123e^-4	0.616	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3631899	3L_3631899_SNP [dm3] 3L_3631899_SNP [dm6]	A	T	3.126e^-4	0.616	INTRON dar1
2L	1917912	2L_1917912_SNP [dm3] 2L_1917912_SNP [dm6]	G	T	3.129e^-4	0.616	INTRON CG7337
3L	6965091	3L_6965091_SNP [dm3] 3L_6971991_SNP [dm6]	G	A	3.131e^-4	0.616	SYNONYMOUS_CODING CG10063 DOWNSTREAM CG9953 & 1 other
3L	7087535	3L_7087535_SNP [dm3] 3L_7094435_SNP [dm6]	G	A	3.139e^-4	0.616	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2R	11703297	2R_11703297_SNP [dm3] 2R_15815792_SNP [dm6]	A	C	3.139e^-4	0.616	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl
2L	3386052	2L_3386052_INS [dm3] 2L_3386052_INS [dm6]	T	TTTTTAGAGATACTT...	3.142e^-4	0.616	DOWNSTREAM CR45301 INTERGENIC
2L	1077986	2L_1077986_SNP [dm3] 2L_1077986_SNP [dm6]	T	C	3.142e^-4	0.616	UTR_5_PRIME ast UPSTREAM S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	754943	2L_754943_SNP [dm3] 2L_754943_SNP [dm6]	G	A	3.144e^-4	0.616	INTRON GABA-B-R3
3R	16443547	3R_16443547_SNP [dm3] 3R_20617825_SNP [dm6]	T	G	3.147e^-4	0.616	UPSTREAM CG5466 & 1 other INTERGENIC
3R	10657279	3R_10657279_SNP [dm3] 3R_14831557_SNP [dm6]	T	A	3.147e^-4	0.616	INTRON btsz
2R	4979404	2R_4979404_SNP [dm3] 2R_9091899_SNP [dm6]	G	T	3.158e^-4	0.617	UPSTREAM CG8080 DOWNSTREAM CG13741 INTRON CG8080
3R	10183644	3R_10183644_SNP [dm3] 3R_14357922_SNP [dm6]	C	T	3.158e^-4	0.617	DOWNSTREAM CG31320 INTRON NK7.1
2L	18150393	2L_18150393_SNP [dm3] 2L_18150393_SNP [dm6]	C	A	3.161e^-4	0.617	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	15643198	2L_15643198_SNP [dm3] 2L_15643198_SNP [dm6]	C	A	3.164e^-4	0.617	DOWNSTREAM CG4587 INTERGENIC
2R	14883332	2R_14883332_SNP [dm3] 2R_18995827_SNP [dm6]	G	T	3.185e^-4	0.619	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	22525466	3R_22525466_SNP [dm3] 3R_26699744_SNP [dm6]	T	C	3.186e^-4	0.619	SYNONYMOUS_CODING amon
X	13930791	X_13930791_SNP [dm3] X_14036758_SNP [dm6]	T	C	3.187e^-4	0.619	INTERGENIC
3R	14960491	3R_14960491_SNP [dm3] 3R_19134769_SNP [dm6]	T	A	3.189e^-4	0.619	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
2L	5154234	2L_5154234_SNP [dm3] 2L_5154234_SNP [dm6]	C	G	3.191e^-4	0.619	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	22068098	2L_22068098_SNP [dm3] 2L_22068098_SNP [dm6]	T	C	3.193e^-4	0.619	DOWNSTREAM CR31700 INTERGENIC	transposable element FlyBase
3L	3278605	3L_3278605_SNP [dm3] 3L_3278605_SNP [dm6]	G	A	3.200e^-4	0.619	INTERGENIC
3R	24915856	3R_24915856_SNP [dm3] 3R_29090134_SNP [dm6]	T	A	3.202e^-4	0.619	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13205999	2R_13205999_SNP [dm3] 2R_17318494_SNP [dm6]	A	T	3.203e^-4	0.619	INTRON mbl
3R	17908275	3R_17908275_SNP [dm3] 3R_22082553_SNP [dm6]	C	T	3.215e^-4	0.62	INTRON CG13408
2L	21971382	2L_21971382_SNP [dm3] 2L_21971382_SNP [dm6]	A	T	3.219e^-4	0.62	INTERGENIC
2R	11455530	2R_11455530_SNP [dm3] 2R_15568025_SNP [dm6]	T	G	3.221e^-4	0.62	UPSTREAM CG30466 INTRON Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4088092	3L_4088092_DEL [dm3] 3L_4088092_DEL [dm6]	GA	G	3.235e^-4	0.62	INTRON Gad1 & 1 other
X	21457416	X_21457416_SNP [dm3] X_21586389_SNP [dm6]	A	G	3.235e^-4	0.62	INTERGENIC
X	16940768	X_16940768_SNP [dm3] X_17046735_SNP [dm6]	T	C	3.235e^-4	0.62	INTRON CG45002
X	7065648	X_7065648_SNP [dm3] X_7171615_SNP [dm6]	T	C	3.240e^-4	0.62	INTRON CG9650 & 1 other
3R	5706874	3R_5706874_INS [dm3] 3R_9881152_INS [dm6]	A	ATGA	3.242e^-4	0.62	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14966137	2R_14966137_SNP [dm3] 2R_19078632_SNP [dm6]	G	A	3.242e^-4	0.62	INTRON 5-HT1A
2R	15019489	2R_15019489_SNP [dm3] 2R_19131984_SNP [dm6]	C	A	3.244e^-4	0.62	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18294833	3L_18294833_SNP [dm3] 3L_18301733_SNP [dm6]	G	A	3.250e^-4	0.62	UPSTREAM CG13700 DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13815802	3R_13815802_SNP [dm3] 3R_17990080_SNP [dm6]	C	A	3.251e^-4	0.62	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7883552	X_7883552_SNP [dm3] X_7989519_SNP [dm6]	T	C	3.251e^-4	0.62	INTERGENIC
3L	7087233	3L_7087233_SNP [dm3] 3L_7094133_SNP [dm6]	A	T	3.261e^-4	0.62	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4308215	3R_4308215_SNP [dm3] 3R_8482493_SNP [dm6]	T	C	3.265e^-4	0.62	INTERGENIC
2L	10827160	2L_10827160_SNP [dm3] 2L_10827160_SNP [dm6]	T	C	3.266e^-4	0.62	UPSTREAM Nos INTRON Nos
2R	13050671	2R_13050671_SNP [dm3] 2R_17163166_SNP [dm6]	G	C	3.267e^-4	0.62	INTERGENIC
3L	4658873	3L_4658873_SNP [dm3] 3L_4658873_SNP [dm6]	C	T	3.278e^-4	0.621	INTRON axo
X	7070486	X_7070486_SNP [dm3] X_7176453_SNP [dm6]	A	T	3.280e^-4	0.621	INTRON CG9650 & 1 other
X	16050821	X_16050821_SNP [dm3] X_16156788_SNP [dm6]	T	A	3.284e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15628652	3R_15628652_SNP [dm3] 3R_19802930_SNP [dm6]	A	G	3.289e^-4	0.621	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1723407	3R_1723407_SNP [dm3] 3R_5897685_SNP [dm6]	G	A	3.292e^-4	0.621	INTRON CG34113	TF binding site BDTNP1_TFBS_twi
2R	6990454	2R_6990454_SNP [dm3] 2R_11102949_SNP [dm6]	A	T	3.296e^-4	0.621	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	20597238	3R_20597238_INS [dm3] 3R_24771516_INS [dm6]	C	CGCC	3.298e^-4	0.621	UPSTREAM CG42331 DOWNSTREAM CG13631 INTERGENIC
2L	22067462	2L_22067462_SNP [dm3] 2L_22067462_SNP [dm6]	T	A	3.302e^-4	0.621	DOWNSTREAM CR31700 INTERGENIC	transposable element FlyBase
3R	6404401	3R_6404401_SNP [dm3] 3R_10578679_SNP [dm6]	C	A	3.314e^-4	0.621	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	9689224	2R_9689224_SNP [dm3] 2R_13801719_SNP [dm6]	C	T	3.320e^-4	0.621	INTRON Cpr50Cb
3R	12470203	3R_12470203_SNP [dm3] 3R_16644481_SNP [dm6]	T	G	3.323e^-4	0.621	DOWNSTREAM CG10324 INTRON CG10326	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	3429529	X_3429529_SNP [dm3] X_3535496_SNP [dm6]	T	C	3.325e^-4	0.621	INTRON CG32791	TF binding site mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.200e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0440795
In_3R_P	0.0471791
In_3R_K	0.0001474

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	18.3895	0.0001

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2228 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9989668	3L_9989668_SNP [dm3] 3L_9996568_SNP [dm6]	A	G	2.430e^-7	0.192	INTRON dpr6
X	14219497	X_14219497_SNP [dm3] X_14325464_SNP [dm6]	A	G	2.508e^-7	0.192	INTRON dpr8
2L	4917163	2L_4917163_SNP [dm3] 2L_4917163_SNP [dm6]	T	A	3.067e^-7	0.192	INTRON hoe1
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	6.807e^-7	0.249	INTRON dpr6
X	14209450	X_14209450_SNP [dm3] X_14315417_SNP [dm6]	T	G	8.307e^-7	0.249	UTR_5_PRIME betaNACtes2 DOWNSTREAM betaNACtes6
X	14217087	X_14217087_SNP [dm3] X_14323054_SNP [dm6]	G	C	8.485e^-7	0.249	INTRON dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	14213020	X_14213020_SNP [dm3] X_14318987_SNP [dm6]	T	C	9.955e^-7	0.249	INTERGENIC
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	1.060e^-6	0.249	UPSTREAM CG17292 INTRON CG17292
X	14209478	X_14209478_SNP [dm3] X_14315445_SNP [dm6]	G	A	1.404e^-6	0.293	DOWNSTREAM betaNACtes6 INTRON betaNACtes2
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	1.682e^-6	0.315	UPSTREAM CG17292 INTRON CG17292
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	2.135e^-6	0.315	UPSTREAM CG17292 INTRON CG17292
X	14219656	X_14219656_SNP [dm3] X_14325623_SNP [dm6]	C	G	2.225e^-6	0.315	INTRON dpr8
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	2.331e^-6	0.315	UPSTREAM hoe1 INTRON hoe1
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	2.385e^-6	0.315	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14211525	X_14211525_SNP [dm3] X_14317492_SNP [dm6]	G	C	2.683e^-6	0.315	UPSTREAM betaNACtes6 INTERGENIC
2R	3787145	2R_3787145_SNP [dm3] 2R_7899640_SNP [dm6]	G	A	2.904e^-6	0.315	INTRON CG30377
X	14214720	X_14214720_INS [dm3] X_14320687_INS [dm6]	G	GG	3.169e^-6	0.315	INTERGENIC
X	14213218	X_14213218_SNP [dm3] X_14319185_SNP [dm6]	C	A	3.212e^-6	0.315	INTERGENIC
3L	9989557	3L_9989557_SNP [dm3] 3L_9996457_SNP [dm6]	G	A	3.359e^-6	0.315	INTRON dpr6
X	14222910	X_14222910_SNP [dm3] X_14328877_SNP [dm6]	G	T	3.790e^-6	0.315	INTRON dpr8
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	4.010e^-6	0.315	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	9387249	2L_9387249_SNP [dm3] 2L_9387249_SNP [dm6]	G	A	4.030e^-6	0.315	UPSTREAM Aldh INTRON Shawl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9387250	2L_9387250_SNP [dm3] 2L_9387250_SNP [dm6]	C	T	4.030e^-6	0.315	UPSTREAM Aldh INTRON Shawl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11200150	2L_11200150_SNP [dm3] 2L_11200150_SNP [dm6]	C	T	4.034e^-6	0.315	INTRON Ca-beta
X	14213277	X_14213277_SNP [dm3] X_14319244_SNP [dm6]	T	C	4.196e^-6	0.315	INTERGENIC
2L	9387252	2L_9387252_SNP [dm3] 2L_9387252_SNP [dm6]	T	G	4.541e^-6	0.328	UPSTREAM Aldh INTRON Shawl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25204555	3R_25204555_INS [dm3] 3R_29378833_INS [dm6]	C	CCTC	5.371e^-6	0.373	INTRON Ptp99A
X	14207794	X_14207794_SNP [dm3] X_14313761_SNP [dm6]	A	G	5.593e^-6	0.374	DOWNSTREAM betaNACtes2 INTERGENIC
3L	9989558	3L_9989558_SNP [dm3] 3L_9996458_SNP [dm6]	A	C	5.780e^-6	0.374	INTRON dpr6
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	6.637e^-6	0.415	DOWNSTREAM ppk26 INTERGENIC
X	14217189	X_14217189_DEL [dm3] X_14323156_DEL [dm6]	TTAAAGTC	T	7.073e^-6	0.423	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2L	10692811	2L_10692811_INS [dm3] 2L_10692811_INS [dm6]	G	GCGGTCG	7.288e^-6	0.423	DOWNSTREAM CG17108 INTERGENIC
3L	9989163	3L_9989163_SNP [dm3] 3L_9996063_SNP [dm6]	T	G	7.549e^-6	0.423	INTRON dpr6
2R	12476912	2R_12476912_SNP [dm3] 2R_16589407_SNP [dm6]	G	T	7.674e^-6	0.423	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5026100	2R_5026100_SNP [dm3] 2R_9138595_SNP [dm6]	T	C	7.926e^-6	0.425	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14882572	2R_14882572_SNP [dm3] 2R_18995067_SNP [dm6]	T	C	8.786e^-6	0.458	SYNONYMOUS_CODING tn DOWNSTREAM snoRNA:abba-a
3R	25204559	3R_25204559_SNP [dm3] 3R_29378837_SNP [dm6]	T	C	9.357e^-6	0.474	INTRON Ptp99A
X	14211941	X_14211941_DEL [dm3] X_14317908_DEL [dm6]	TTT	T	1.021e^-5	0.498	UPSTREAM betaNACtes6 INTERGENIC
2R	12476917	2R_12476917_SNP [dm3] 2R_16589412_SNP [dm6]	A	T	1.036e^-5	0.498	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14215331	X_14215331_SNP [dm3] X_14321298_SNP [dm6]	C	G	1.073e^-5	0.501	UPSTREAM dpr8 INTERGENIC
3R	23887526	3R_23887526_SNP [dm3] 3R_28061804_SNP [dm6]	G	C	1.094e^-5	0.501	INTRON CG34362
2L	4648562	2L_4648562_SNP [dm3] 2L_4648562_SNP [dm6]	A	G	1.158e^-5	0.517	DOWNSTREAM CG43798 INTERGENIC
2L	8372116	2L_8372116_SNP [dm3] 2L_8372116_SNP [dm6]	A	G	1.306e^-5	0.541	UPSTREAM CG17292 INTRON CG17292
2L	4648712	2L_4648712_SNP [dm3] 2L_4648712_SNP [dm6]	T	A	1.321e^-5	0.541	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4648720	2L_4648720_SNP [dm3] 2L_4648720_SNP [dm6]	G	A	1.321e^-5	0.541	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14222884	X_14222884_INS [dm3] X_14328851_INS [dm6]	G	GTACAG	1.344e^-5	0.541	INTRON dpr8
2L	4917160	2L_4917160_SNP [dm3] 2L_4917160_SNP [dm6]	T	A	1.377e^-5	0.541	INTRON hoe1
3L	9989066	3L_9989066_SNP [dm3] 3L_9995966_SNP [dm6]	A	T	1.384e^-5	0.541	INTRON dpr6
2L	9252537	2L_9252537_SNP [dm3] 2L_9252537_SNP [dm6]	C	A	1.478e^-5	0.566	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14681238	X_14681238_SNP [dm3] X_14787205_SNP [dm6]	A	C	1.522e^-5	0.571	UPSTREAM Ag5r DOWNSTREAM rut EXON CR45522
3L	22149333	3L_22149333_SNP [dm3] 3L_22156233_SNP [dm6]	C	A	1.710e^-5	0.613	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9485734	2L_9485734_SNP [dm3] 2L_9485734_SNP [dm6]	T	A	1.744e^-5	0.613	INTERGENIC
2L	11489119	2L_11489119_SNP [dm3] 2L_11489119_SNP [dm6]	A	G	1.770e^-5	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11902980	3R_11902980_SNP [dm3] 3R_16077258_SNP [dm6]	C	T	1.790e^-5	0.613	SYNONYMOUS_CODING Mhcl
2R	20221527	2R_20221527_SNP [dm3] 2R_24334004_SNP [dm6]	A	T	1.852e^-5	0.613	UTR_5_PRIME slbo DOWNSTREAM CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20502199	2R_20502199_SNP [dm3] 2R_24614676_SNP [dm6]	C	T	1.854e^-5	0.613	UPSTREAM CG4741 DOWNSTREAM CG3608 & 1 other INTRON CG4741
3R	23887482	3R_23887482_SNP [dm3] 3R_28061760_SNP [dm6]	C	T	1.875e^-5	0.613	INTRON CG34362
2R	4217529	2R_4217529_SNP [dm3] 2R_8330024_SNP [dm6]	G	A	1.926e^-5	0.613	INTRON pdm3
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	1.930e^-5	0.613	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
2R	11944816	2R_11944816_SNP [dm3] 2R_16057311_SNP [dm6]	A	G	2.031e^-5	0.635	NON_SYNONYMOUS_CODING CG8405	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19717241	3R_19717241_DEL [dm3] 3R_23891519_DEL [dm6]	TCGCAATCGCTTCCTTCTGC...	T	2.096e^-5	0.644	UPSTREAM TfIIA-S DOWNSTREAM tbrd-1 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA transposable element FlyBase
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.195e^-5	0.652	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11492250	2L_11492250_SNP [dm3] 2L_11492250_SNP [dm6]	T	C	2.219e^-5	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14217202	X_14217202_SNP [dm3] X_14323169_SNP [dm6]	G	A	2.259e^-5	0.652	INTRON dpr8	TF binding site BDTNP1_TFBS_da
3L	9977149	3L_9977149_SNP [dm3] 3L_9984049_SNP [dm6]	G	A	2.274e^-5	0.652	INTRON dpr6
2L	1029287	2L_1029287_SNP [dm3] 2L_1029287_SNP [dm6]	C	T	2.308e^-5	0.652	INTRON IA-2
X	14217152	X_14217152_SNP [dm3] X_14323119_SNP [dm6]	C	T	2.327e^-5	0.652	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2L	7143208	2L_7143208_SNP [dm3] 2L_7143208_SNP [dm6]	T	A	2.375e^-5	0.653	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6577634	2R_6577634_SNP [dm3] 2R_10690129_SNP [dm6]	G	C	2.498e^-5	0.653	INTRON stan
3R	6289143	3R_6289143_INS [dm3] 3R_10463421_INS [dm6]	T	CA	2.539e^-5	0.653	EXON CR44955
2R	16909729	2R_16909729_SNP [dm3] 2R_21022224_SNP [dm6]	C	A	2.582e^-5	0.653	INTRON RIC-3
X	14217419	X_14217419_SNP [dm3] X_14323386_SNP [dm6]	T	G	2.601e^-5	0.653	INTRON dpr8
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	2.663e^-5	0.653	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	4929825	2L_4929825_SNP [dm3] 2L_4929825_SNP [dm6]	C	A	2.695e^-5	0.653	INTRON hoe1
3L	9989709	3L_9989709_SNP [dm3] 3L_9996609_SNP [dm6]	T	G	2.745e^-5	0.653	INTRON dpr6
2L	1092240	2L_1092240_SNP [dm3] 2L_1092240_SNP [dm6]	G	C	2.749e^-5	0.653	INTRON CG4629
X	14217307	X_14217307_SNP [dm3] X_14323274_SNP [dm6]	A	G	2.757e^-5	0.653	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2L	11490486	2L_11490486_SNP [dm3] 2L_11490486_SNP [dm6]	T	C	2.791e^-5	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12101939	2L_12101939_SNP [dm3] 2L_12101939_SNP [dm6]	A	G	2.874e^-5	0.653	SYNONYMOUS_CODING Patsas	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	2.915e^-5	0.653	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7123671	2L_7123671_SNP [dm3] 2L_7123671_SNP [dm6]	C	T	2.934e^-5	0.653	INTRON Pvf3
2L	12102314	2L_12102314_SNP [dm3] 2L_12102314_SNP [dm6]	T	C	2.957e^-5	0.653	SYNONYMOUS_CODING Patsas	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18156237	3R_18156237_SNP [dm3] 3R_22330515_SNP [dm6]	G	A	2.958e^-5	0.653	UTR_3_PRIME CG7080 UPSTREAM CG33721	TF binding site mE1_TFBS_cad
2L	7123663	2L_7123663_SNP [dm3] 2L_7123663_SNP [dm6]	A	C	2.976e^-5	0.653	INTRON Pvf3
2L	11494675	2L_11494675_SNP [dm3] 2L_11494675_SNP [dm6]	G	A	2.983e^-5	0.653	INTERGENIC
X	14216893	X_14216893_SNP [dm3] X_14322860_SNP [dm6]	C	T	2.994e^-5	0.653	UTR_5_PRIME dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11346628	2L_11346628_SNP [dm3] 2L_11346628_SNP [dm6]	A	G	3.125e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	4512862	3L_4512862_SNP [dm3] 3L_4512862_SNP [dm6]	T	A	3.150e^-5	0.671	INTRON Tie	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7578960	2L_7578960_SNP [dm3] 2L_7578960_SNP [dm6]	C	A	3.313e^-5	0.698	START_GAINED RapGAP1 UTR_5_PRIME RapGAP1
2L	7578928	2L_7578928_DEL [dm3] 2L_7578928_DEL [dm6]	TGGGGTT	T	3.418e^-5	0.701	UTR_5_PRIME RapGAP1
2L	7578508	2L_7578508_SNP [dm3] 2L_7578508_SNP [dm6]	T	C	3.450e^-5	0.701	NON_SYNONYMOUS_CODING RapGAP1
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	3.473e^-5	0.701	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
3L	9988056	3L_9988056_SNP [dm3] 3L_9994956_SNP [dm6]	C	T	3.475e^-5	0.701	INTRON dpr6
2L	7578843	2L_7578843_SNP [dm3] 2L_7578843_SNP [dm6]	C	T	3.518e^-5	0.701	UTR_5_PRIME RapGAP1
3L	2841886	3L_2841886_SNP [dm3] 3L_2841886_SNP [dm6]	G	A	3.549e^-5	0.701	INTRON CG43444
2L	7123656	2L_7123656_SNP [dm3] 2L_7123656_SNP [dm6]	A	G	3.590e^-5	0.701	INTRON Pvf3
2R	6972862	2R_6972862_DEL [dm3] 2R_11085357_DEL [dm6]	CAGCGGGCTGC...	C	3.645e^-5	0.701	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12664432	2R_12664432_SNP [dm3] 2R_16776927_SNP [dm6]	A	G	3.703e^-5	0.701	INTERGENIC
2R	16502797	2R_16502797_SNP [dm3] 2R_20615292_SNP [dm6]	T	C	3.720e^-5	0.701	INTRON Hil
2L	8323603	2L_8323603_SNP [dm3] 2L_8323603_SNP [dm6]	T	C	3.756e^-5	0.701	INTRON CG7781
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	3.773e^-5	0.701	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2L	12801677	2L_12801677_SNP [dm3] 2L_12801677_SNP [dm6]	C	G	3.822e^-5	0.701	INTERGENIC
X	14217348	X_14217348_SNP [dm3] X_14323315_SNP [dm6]	C	T	3.862e^-5	0.701	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2L	4910823	2L_4910823_SNP [dm3] 2L_4910823_SNP [dm6]	A	G	3.963e^-5	0.701	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	4.008e^-5	0.701	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9485708	2L_9485708_DEL [dm3] 2L_9485708_DEL [dm6]	GAC	G	4.012e^-5	0.701	INTERGENIC
2L	7123670	2L_7123670_SNP [dm3] 2L_7123670_SNP [dm6]	A	C	4.052e^-5	0.701	INTRON Pvf3
2R	4189831	2R_4189831_SNP [dm3] 2R_8302326_SNP [dm6]	G	A	4.057e^-5	0.701	INTERGENIC
X	14228117	X_14228117_SNP [dm3] X_14334084_SNP [dm6]	C	A	4.086e^-5	0.701	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11891157	3R_11891157_SNP [dm3] 3R_16065435_SNP [dm6]	T	C	4.111e^-5	0.701	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_cad
2R	10707166	2R_10707166_SNP [dm3] 2R_14819661_SNP [dm6]	A	G	4.192e^-5	0.703	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16730903	3L_16730903_SNP [dm3] 3L_16737803_SNP [dm6]	A	C	4.289e^-5	0.703	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23887522	3R_23887522_SNP [dm3] 3R_28061800_SNP [dm6]	T	C	4.291e^-5	0.703	INTRON CG34362
3R	8160719	3R_8160719_SNP [dm3] 3R_12334997_SNP [dm6]	A	G	4.344e^-5	0.703	UPSTREAM CR44941 INTERGENIC
2L	4917468	2L_4917468_SNP [dm3] 2L_4917468_SNP [dm6]	G	A	4.363e^-5	0.703	INTRON hoe1
2L	12767850	2L_12767850_SNP [dm3] 2L_12767850_SNP [dm6]	C	T	4.372e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_Stat92E
2L	4899472	2L_4899472_SNP [dm3] 2L_4899472_SNP [dm6]	G	T	4.394e^-5	0.703	INTRON CG3036
3L	20384817	3L_20384817_SNP [dm3] 3L_20391717_SNP [dm6]	T	C	4.431e^-5	0.703	UTR_3_PRIME fbl & 1 other UPSTREAM CR43944 DOWNSTREAM fbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14228120	X_14228120_DEL [dm3] X_14334087_DEL [dm6]	GTTTTTAAATTCTCAATCAA...	G	4.459e^-5	0.703	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18777855	X_18777855_SNP [dm3] X_18883822_SNP [dm6]	C	T	4.601e^-5	0.714	UTR_3_PRIME CG34401 UPSTREAM CG7332	TF binding site mE1_TFBS_HSA
2R	12554282	2R_12554282_SNP [dm3] 2R_16666777_SNP [dm6]	A	T	4.679e^-5	0.714	INTRON Picot
3R	26892630	3R_26892630_SNP [dm3] 3R_31066908_SNP [dm6]	T	G	4.721e^-5	0.714	INTRON Sox100B
2L	10691093	2L_10691093_SNP [dm3] 2L_10691093_SNP [dm6]	C	T	4.729e^-5	0.714	INTERGENIC
2L	10691095	2L_10691095_SNP [dm3] 2L_10691095_SNP [dm6]	A	C	4.746e^-5	0.714	INTERGENIC
2R	6924404	2R_6924404_SNP [dm3] 2R_11036899_SNP [dm6]	A	G	4.807e^-5	0.714	INTRON luna
3R	13289860	3R_13289860_INS [dm3] 3R_17464138_INS [dm6]	A	ATCGTA	4.824e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15100021	2L_15100021_SNP [dm3] 2L_15100021_SNP [dm6]	A	T	4.833e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15318116	2R_15318116_SNP [dm3] 2R_19430611_SNP [dm6]	C	T	4.935e^-5	0.723	DOWNSTREAM Fak & 1 other INTERGENIC
2R	15318113	2R_15318113_SNP [dm3] 2R_19430608_SNP [dm6]	C	T	5.093e^-5	0.724	DOWNSTREAM Fak & 1 other INTERGENIC
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	5.108e^-5	0.724	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3L	9988020	3L_9988020_SNP [dm3] 3L_9994920_SNP [dm6]	C	T	5.197e^-5	0.724	INTRON dpr6
3R	11902160	3R_11902160_SNP [dm3] 3R_16076438_SNP [dm6]	C	G	5.239e^-5	0.724	UPSTREAM Mhcl INTRON Mhcl
2L	12801678	2L_12801678_SNP [dm3] 2L_12801678_SNP [dm6]	G	T	5.241e^-5	0.724	INTERGENIC
X	14215389	X_14215389_SNP [dm3] X_14321356_SNP [dm6]	A	T	5.252e^-5	0.724	UPSTREAM dpr8 INTERGENIC
2L	7579868	2L_7579868_SNP [dm3] 2L_7579868_SNP [dm6]	A	T	5.336e^-5	0.724	UPSTREAM RapGAP1 INTERGENIC
X	14220178	X_14220178_SNP [dm3] X_14326145_SNP [dm6]	T	C	5.382e^-5	0.724	INTRON dpr8
2R	5025977	2R_5025977_SNP [dm3] 2R_9138472_SNP [dm6]	G	A	5.427e^-5	0.724	UPSTREAM CG8788 & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12143462	2R_12143462_SNP [dm3] 2R_16255957_SNP [dm6]	G	A	5.452e^-5	0.724	INTRON CngA	insulator Insulator_Class_II.mE01
2L	8784749	2L_8784749_SNP [dm3] 2L_8784749_SNP [dm6]	T	A	5.527e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14272908	3L_14272908_SNP [dm3] 3L_14279808_SNP [dm6]	G	A	5.644e^-5	0.724	INTRON fz
3R	12020864	3R_12020864_SNP [dm3] 3R_16195142_SNP [dm6]	A	G	5.710e^-5	0.724	INTRON sra
2R	6924409	2R_6924409_SNP [dm3] 2R_11036904_SNP [dm6]	T	G	5.744e^-5	0.724	INTRON luna
2L	8371881	2L_8371881_SNP [dm3] 2L_8371881_SNP [dm6]	A	G	5.820e^-5	0.724	UPSTREAM CG17292 INTRON CG17292
3R	21590443	3R_21590443_DEL [dm3] 3R_25764721_DEL [dm6]	TT	C	5.850e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_inv
X	21161995	X_21161995_DEL [dm3] X_21290968_DEL [dm6]	GTT	G	5.869e^-5	0.724	INTRON CG1494
2L	10079962	2L_10079962_SNP [dm3] 2L_10079962_SNP [dm6]	T	A	5.883e^-5	0.724	INTRON CG44153	TF binding site mE1_TFBS_inv
2L	12100623	2L_12100623_SNP [dm3] 2L_12100623_SNP [dm6]	A	C	5.911e^-5	0.724	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
3L	14095778	3L_14095778_SNP [dm3] 3L_14102678_SNP [dm6]	C	T	5.952e^-5	0.724	DOWNSTREAM Sox21a INTERGENIC
3L	10766532	3L_10766532_INS [dm3] 3L_10773432_INS [dm6]	A	AATTA	5.971e^-5	0.724	DOWNSTREAM CG43245 INTERGENIC
3R	18983447	3R_18983447_SNP [dm3] 3R_23157725_SNP [dm6]	G	A	5.973e^-5	0.724	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13049284	2R_13049284_SNP [dm3] 2R_17161779_SNP [dm6]	A	T	5.979e^-5	0.724	UPSTREAM CG30457 INTERGENIC
3R	9970696	3R_9970696_SNP [dm3] 3R_14144974_SNP [dm6]	G	C	6.044e^-5	0.724	INTERGENIC
2L	12768933	2L_12768933_SNP [dm3] 2L_12768933_SNP [dm6]	C	T	6.052e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23614154	3R_23614154_SNP [dm3] 3R_27788432_SNP [dm6]	C	A	6.059e^-5	0.724	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	7782527	X_7782527_SNP [dm3] X_7888494_SNP [dm6]	G	A	6.212e^-5	0.724	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2759251	3L_2759251_SNP [dm3] 3L_2759251_SNP [dm6]	A	G	6.254e^-5	0.724	INTRON Mrtf
3R	21593558	3R_21593558_SNP [dm3] 3R_25767836_SNP [dm6]	A	T	6.329e^-5	0.724	INTERGENIC
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	6.363e^-5	0.724	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11770075	2L_11770075_SNP [dm3] 2L_11770075_SNP [dm6]	A	G	6.366e^-5	0.724	INTERGENIC
3L	10766534	3L_10766534_SNP [dm3] 3L_10773434_SNP [dm6]	C	G	6.415e^-5	0.724	DOWNSTREAM CG43245 INTERGENIC
X	6735440	X_6735440_SNP [dm3] X_6841407_SNP [dm6]	T	C	6.435e^-5	0.724	INTRON CG14435
2R	20225259	2R_20225259_SNP [dm3] 2R_24337736_SNP [dm6]	A	G	6.495e^-5	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21592050	3R_21592050_DEL [dm3] 3R_25766328_DEL [dm6]	CA	T	6.516e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11141533	2L_11141533_SNP [dm3] 2L_11141533_SNP [dm6]	G	T	6.539e^-5	0.724	SYNONYMOUS_CODING Gyc32E
2L	4917241	2L_4917241_SNP [dm3] 2L_4917241_SNP [dm6]	G	A	6.583e^-5	0.724	INTRON hoe1
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	6.586e^-5	0.724	INTRON ssh	TF binding site mE1_TFBS_chinmo
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	6.652e^-5	0.724	INTRON mam
3R	19323454	3R_19323454_SNP [dm3] 3R_23497732_SNP [dm6]	T	C	6.685e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	6.696e^-5	0.724	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20804884	2L_20804884_SNP [dm3] 2L_20804884_SNP [dm6]	T	C	6.708e^-5	0.724	INTRON CG9328
2L	10019067	2L_10019067_SNP [dm3] 2L_10019067_SNP [dm6]	T	G	6.804e^-5	0.724	INTERGENIC
2L	10574955	2L_10574955_SNP [dm3] 2L_10574955_SNP [dm6]	T	A	6.814e^-5	0.724	DOWNSTREAM w-cup INTRON Trim9
X	14222597	X_14222597_SNP [dm3] X_14328564_SNP [dm6]	A	T	6.843e^-5	0.724	INTRON dpr8
3L	5205050	3L_5205050_SNP [dm3] 3L_5211950_SNP [dm6]	C	G	6.847e^-5	0.724	INTRON shep
X	2500331	X_2500331_SNP [dm3] X_2606298_SNP [dm6]	G	A	6.890e^-5	0.724	SYNONYMOUS_CODING Zw10 DOWNSTREAM Bzd	TF binding site mE1_TFBS_chinmo
X	14215710	X_14215710_SNP [dm3] X_14321677_SNP [dm6]	C	T	6.909e^-5	0.724	UPSTREAM dpr8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	6.996e^-5	0.724	INTRON CG34355
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	7.011e^-5	0.724	INTRON A2bp1
2L	12768927	2L_12768927_SNP [dm3] 2L_12768927_SNP [dm6]	G	A	7.039e^-5	0.724	INTERGENIC
2L	4648529	2L_4648529_DEL [dm3] 2L_4648529_DEL [dm6]	ACCGAGA	A	7.047e^-5	0.724	DOWNSTREAM CG43798 INTERGENIC
2L	7155311	2L_7155311_SNP [dm3] 2L_7155311_SNP [dm6]	G	A	7.103e^-5	0.724	INTRON Pvf3	TF binding site mE1_TFBS_sens
2R	18039221	2R_18039221_SNP [dm3] 2R_22151716_SNP [dm6]	A	C	7.107e^-5	0.724	INTRON a
2R	15194859	2R_15194859_SNP [dm3] 2R_19307354_SNP [dm6]	C	A	7.108e^-5	0.724	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	7.137e^-5	0.724	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	18983515	3R_18983515_SNP [dm3] 3R_23157793_SNP [dm6]	T	C	7.152e^-5	0.724	SYNONYMOUS_CODING unk DOWNSTREAM VhaAC39-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14226238	X_14226238_SNP [dm3] X_14332205_SNP [dm6]	G	T	7.192e^-5	0.724	INTRON dpr8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11490497	2L_11490497_SNP [dm3] 2L_11490497_SNP [dm6]	A	T	7.220e^-5	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21162002	X_21162002_SNP [dm3] X_21290975_SNP [dm6]	G	A	7.327e^-5	0.728	INTRON CG1494
X	2500226	X_2500226_SNP [dm3] X_2606193_SNP [dm6]	C	T	7.340e^-5	0.728	SYNONYMOUS_CODING Zw10 DOWNSTREAM Bzd	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	15488051	3R_15488051_SNP [dm3] 3R_19662329_SNP [dm6]	A	G	7.377e^-5	0.728	SYNONYMOUS_CODING ort
3L	12351616	3L_12351616_SNP [dm3] 3L_12358516_SNP [dm6]	G	A	7.447e^-5	0.731	INTERGENIC
X	14216560	X_14216560_SNP [dm3] X_14322527_SNP [dm6]	A	G	7.556e^-5	0.735	UTR_5_PRIME dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18199780	2R_18199780_SNP [dm3] 2R_22312275_SNP [dm6]	A	C	7.561e^-5	0.735	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6924335	2R_6924335_SNP [dm3] 2R_11036830_SNP [dm6]	A	G	7.611e^-5	0.736	INTRON luna
2R	18039222	2R_18039222_SNP [dm3] 2R_22151717_SNP [dm6]	A	T	7.651e^-5	0.736	INTRON a
3R	12238491	3R_12238491_SNP [dm3] 3R_16412769_SNP [dm6]	T	C	7.690e^-5	0.736	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	12644912	2R_12644912_SNP [dm3] 2R_16757407_SNP [dm6]	A	G	7.798e^-5	0.74	SYNONYMOUS_CODING unc-104
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	7.809e^-5	0.74	INTERGENIC
2L	15100035	2L_15100035_DEL [dm3] 2L_15100035_DEL [dm6]	CC	T	7.916e^-5	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8365132	3R_8365132_SNP [dm3] 3R_12539410_SNP [dm6]	C	T	8.028e^-5	0.741	INTRON Octbeta3R
2R	6948840	2R_6948840_SNP [dm3] 2R_11061335_SNP [dm6]	T	G	8.041e^-5	0.741	INTRON luna
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	8.046e^-5	0.741	INTRON Pdp1
2L	13906028	2L_13906028_SNP [dm3] 2L_13906028_SNP [dm6]	C	T	8.051e^-5	0.741	UPSTREAM Ance INTRON Ance	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21162013	X_21162013_SNP [dm3] X_21290986_SNP [dm6]	A	C	8.194e^-5	0.741	INTRON CG1494
2R	12834558	2R_12834558_SNP [dm3] 2R_16947053_SNP [dm6]	C	T	8.209e^-5	0.741	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
2R	17340577	2R_17340577_SNP [dm3] 2R_21453072_SNP [dm6]	C	G	8.247e^-5	0.741	INTRON Sdc
X	7939533	X_7939533_SNP [dm3] X_8045500_SNP [dm6]	C	T	8.332e^-5	0.741	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3R	20769505	3R_20769505_SNP [dm3] 3R_24943783_SNP [dm6]	C	T	8.364e^-5	0.741	UTR_5_PRIME ssh INTRON ssh
3R	9986079	3R_9986079_SNP [dm3] 3R_14160357_SNP [dm6]	T	G	8.476e^-5	0.741	UPSTREAM CG31327 INTERGENIC
X	14217210	X_14217210_SNP [dm3] X_14323177_SNP [dm6]	A	T	8.486e^-5	0.741	INTRON dpr8	TF binding site BDTNP1_TFBS_da
3L	9988171	3L_9988171_SNP [dm3] 3L_9995071_SNP [dm6]	G	A	8.496e^-5	0.741	INTRON dpr6
3L	10615424	3L_10615424_SNP [dm3] 3L_10622324_SNP [dm6]	A	G	8.504e^-5	0.741	DOWNSTREAM CG42521 INTERGENIC
2L	9621585	2L_9621585_SNP [dm3] 2L_9621585_SNP [dm6]	G	A	8.534e^-5	0.741	SYNONYMOUS_CODING GlcAT-S
3R	19691455	3R_19691455_SNP [dm3] 3R_23865733_SNP [dm6]	C	T	8.599e^-5	0.741	INTRON Pli	TF binding site BDTNP1_TFBS_dl
3R	12035285	3R_12035285_SNP [dm3] 3R_16209563_SNP [dm6]	G	A	8.714e^-5	0.741	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
3R	21520095	3R_21520095_DEL [dm3] 3R_25694373_DEL [dm6]	TAATACAGT	T	8.772e^-5	0.741	INTERGENIC
2R	5028422	2R_5028422_SNP [dm3] 2R_9140917_SNP [dm6]	C	T	8.844e^-5	0.741	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3L	10290250	3L_10290250_SNP [dm3] 3L_10297150_SNP [dm6]	T	G	8.885e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15787350	3R_15787350_SNP [dm3] 3R_19961628_SNP [dm6]	A	T	8.907e^-5	0.741	INTRON Hs6st
3L	21073895	3L_21073895_SNP [dm3] 3L_21080795_SNP [dm6]	T	G	8.929e^-5	0.741	INTRON ko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18133491	2R_18133491_SNP [dm3] 2R_22245986_SNP [dm6]	A	T	9.006e^-5	0.741	INTRON dve
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	9.009e^-5	0.741	INTRON Pdp1
3L	9988866	3L_9988866_SNP [dm3] 3L_9995766_SNP [dm6]	C	G	9.032e^-5	0.741	INTRON dpr6
2L	11505290	2L_11505290_SNP [dm3] 2L_11505290_SNP [dm6]	T	C	9.048e^-5	0.741	INTRON spz4
3L	9989014	3L_9989014_SNP [dm3] 3L_9995914_SNP [dm6]	C	T	9.054e^-5	0.741	INTRON dpr6
3R	18983465	3R_18983465_SNP [dm3] 3R_23157743_SNP [dm6]	A	T	9.080e^-5	0.741	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	12095517	X_12095517_SNP [dm3] X_12201484_SNP [dm6]	C	G	9.125e^-5	0.741	INTRON Ten-a
3L	2759376	3L_2759376_SNP [dm3] 3L_2759376_SNP [dm6]	T	G	9.254e^-5	0.741	INTRON Mrtf
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	9.320e^-5	0.741	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2548857	3L_2548857_SNP [dm3] 3L_2548857_SNP [dm6]	T	A	9.372e^-5	0.741	INTRON Spn
2R	20221228	2R_20221228_SNP [dm3] 2R_24333705_SNP [dm6]	G	C	9.417e^-5	0.741	SYNONYMOUS_CODING slbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14398542	X_14398542_SNP [dm3] X_14504509_SNP [dm6]	A	G	9.455e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2575177	2L_2575177_SNP [dm3] 2L_2575177_SNP [dm6]	G	A	9.500e^-5	0.741	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3041181	2R_3041181_SNP [dm3] 2R_7153676_SNP [dm6]	T	C	9.572e^-5	0.741	UPSTREAM Spn43Ab DOWNSTREAM Spn43Ad INTRON pk
X	9206606	X_9206606_SNP [dm3] X_9312573_SNP [dm6]	C	G	9.612e^-5	0.741	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14217216	X_14217216_DEL [dm3] X_14323183_DEL [dm6]	AGCAG	TA	9.626e^-5	0.741	INTRON dpr8	TF binding site BDTNP1_TFBS_da
3L	12106063	3L_12106063_SNP [dm3] 3L_12112963_SNP [dm6]	T	C	9.630e^-5	0.741	INTERGENIC
3R	6570391	3R_6570391_SNP [dm3] 3R_10744669_SNP [dm6]	T	A	9.673e^-5	0.741	INTRON TkR86C
3L	14095792	3L_14095792_SNP [dm3] 3L_14102692_SNP [dm6]	T	C	9.722e^-5	0.741	DOWNSTREAM Sox21a INTERGENIC
3L	14082209	3L_14082209_SNP [dm3] 3L_14089109_SNP [dm6]	C	A	9.732e^-5	0.741	INTERGENIC
2R	6924283	2R_6924283_SNP [dm3] 2R_11036778_SNP [dm6]	A	C	9.765e^-5	0.741	INTRON luna
X	20563554	X_20563554_SNP [dm3] X_20692527_SNP [dm6]	T	C	9.875e^-5	0.741	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14227972	X_14227972_SNP [dm3] X_14333939_SNP [dm6]	G	A	9.946e^-5	0.741	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4666107	3R_4666107_SNP [dm3] 3R_8840385_SNP [dm6]	T	G	9.996e^-5	0.741	NON_SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10102527	2L_10102527_SNP [dm3] 2L_10102527_SNP [dm6]	A	C	1.000e^-4	0.741	INTRON CG44153 & 1 other
2R	6914114	2R_6914114_DEL [dm3] 2R_11026609_DEL [dm6]	TC	T	1.001e^-4	0.741	INTRON luna
3L	6940324	3L_6940324_SNP [dm3] 3L_6947224_SNP [dm6]	T	G	1.002e^-4	0.741	INTRON tow
2R	17992269	2R_17992269_SNP [dm3] 2R_22104764_SNP [dm6]	C	T	1.004e^-4	0.741	SYNONYMOUS_CODING CG6613
X	14207075	X_14207075_SNP [dm3] X_14313042_SNP [dm6]	G	A	1.009e^-4	0.741	INTERGENIC
2R	17340584	2R_17340584_SNP [dm3] 2R_21453079_SNP [dm6]	C	T	1.011e^-4	0.741	INTRON Sdc
2L	11386564	2L_11386564_SNP [dm3] 2L_11386564_SNP [dm6]	A	T	1.029e^-4	0.741	INTERGENIC	regulatory region REDfly_CRMs
3L	7850774	3L_7850774_SNP [dm3] 3L_7857674_SNP [dm6]	G	A	1.029e^-4	0.741	INTRON Pdp1
2L	11057075	2L_11057075_INS [dm3] 2L_11057075_INS [dm6]	T	TGAT	1.032e^-4	0.741	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7787839	X_7787839_SNP [dm3] X_7893806_SNP [dm6]	G	A	1.034e^-4	0.741	UPSTREAM p115 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco
X	14220256	X_14220256_SNP [dm3] X_14326223_SNP [dm6]	T	G	1.037e^-4	0.741	INTRON dpr8
3L	9988842	3L_9988842_SNP [dm3] 3L_9995742_SNP [dm6]	T	A	1.041e^-4	0.741	INTRON dpr6
X	14222788	X_14222788_DEL [dm3] X_14328755_DEL [dm6]	GTTCAG	G	1.041e^-4	0.741	INTRON dpr8
2R	12834567	2R_12834567_SNP [dm3] 2R_16947062_SNP [dm6]	A	G	1.050e^-4	0.741	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
3R	14144913	3R_14144913_SNP [dm3] 3R_18319191_SNP [dm6]	G	C	1.051e^-4	0.741	INTRON CG31235
3R	23887503	3R_23887503_SNP [dm3] 3R_28061781_SNP [dm6]	T	C	1.058e^-4	0.741	INTRON CG34362
2R	7069808	2R_7069808_SNP [dm3] 2R_11182303_SNP [dm6]	T	G	1.061e^-4	0.741	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	14217184	X_14217184_SNP [dm3] X_14323151_SNP [dm6]	A	T	1.068e^-4	0.741	INTRON dpr8	TF binding site BDTNP1_TFBS_da
X	14217186	X_14217186_SNP [dm3] X_14323153_SNP [dm6]	T	A	1.068e^-4	0.741	INTRON dpr8	TF binding site BDTNP1_TFBS_da
X	14465975	X_14465975_SNP [dm3] X_14571942_SNP [dm6]	T	C	1.084e^-4	0.741	INTERGENIC
2L	2574854	2L_2574854_SNP [dm3] 2L_2574854_SNP [dm6]	T	A	1.092e^-4	0.741	DOWNSTREAM insv INTRON Rad1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10462671	3L_10462671_SNP [dm3] 3L_10469571_SNP [dm6]	C	G	1.099e^-4	0.741	DOWNSTREAM S-Lap3 INTERGENIC
3L	11177866	3L_11177866_SNP [dm3] 3L_11184766_SNP [dm6]	G	T	1.108e^-4	0.741	INTRON GlcAT-P
X	14228001	X_14228001_SNP [dm3] X_14333968_SNP [dm6]	T	A	1.108e^-4	0.741	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6622243	3R_6622243_SNP [dm3] 3R_10796521_SNP [dm6]	G	T	1.108e^-4	0.741	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_sens
2R	18412735	2R_18412735_INS [dm3] 2R_22525230_INS [dm6]	G	GG	1.110e^-4	0.741	INTRON px
2L	6400373	2L_6400373_SNP [dm3] 2L_6400373_SNP [dm6]	G	A	1.113e^-4	0.741	INTRON CG42368
2L	8371400	2L_8371400_SNP [dm3] 2L_8371400_SNP [dm6]	C	T	1.113e^-4	0.741	UPSTREAM CR45341 INTRON CG17292
2L	2709522	2L_2709522_SNP [dm3] 2L_2709522_SNP [dm6]	A	T	1.114e^-4	0.741	INTRON CG31690
2L	21643658	2L_21643658_SNP [dm3] 2L_21643658_SNP [dm6]	G	A	1.129e^-4	0.741	INTRON Ac3
2R	5026024	2R_5026024_SNP [dm3] 2R_9138519_SNP [dm6]	G	A	1.129e^-4	0.741	UTR_5_PRIME CG8788 & 1 other UPSTREAM alc & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19969131	2L_19969131_SNP [dm3] 2L_19969131_SNP [dm6]	T	A	1.132e^-4	0.741	UTR_3_PRIME CG43861 DOWNSTREAM CG43861
2L	10117429	2L_10117429_SNP [dm3] 2L_10117429_SNP [dm6]	T	C	1.132e^-4	0.741	INTRON CG44153 & 1 other
2L	3750310	2L_3750310_SNP [dm3] 2L_3750310_SNP [dm6]	T	A	1.139e^-4	0.741	SYNONYMOUS_CODING CG10019
X	21162025	X_21162025_SNP [dm3] X_21290998_SNP [dm6]	T	C	1.141e^-4	0.741	INTRON CG1494
3L	2237124	3L_2237124_SNP [dm3] 3L_2237124_SNP [dm6]	C	T	1.142e^-4	0.741	UPSTREAM ACXD & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	14228114	X_14228114_SNP [dm3] X_14334081_SNP [dm6]	G	T	1.144e^-4	0.741	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.145e^-4	0.741	INTERGENIC
2R	9955809	2R_9955809_SNP [dm3] 2R_14068304_SNP [dm6]	A	T	1.146e^-4	0.741	INTRON Prosap
2R	12756934	2R_12756934_SNP [dm3] 2R_16869429_SNP [dm6]	G	T	1.150e^-4	0.741	UTR_5_PRIME CG6426 DOWNSTREAM Ef1beta	TF binding site mE1_TFBS_Trl
3L	9977424	3L_9977424_SNP [dm3] 3L_9984324_SNP [dm6]	T	A	1.156e^-4	0.741	INTRON dpr6
2L	8784768	2L_8784768_SNP [dm3] 2L_8784768_SNP [dm6]	G	A	1.162e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19249821	2R_19249821_SNP [dm3] 2R_23362298_SNP [dm6]	G	A	1.162e^-4	0.741	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12389773	2R_12389773_SNP [dm3] 2R_16502268_SNP [dm6]	C	T	1.167e^-4	0.741	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3R	19735340	3R_19735340_SNP [dm3] 3R_23909618_SNP [dm6]	T	C	1.167e^-4	0.741	INTRON sba
X	14207076	X_14207076_SNP [dm3] X_14313043_SNP [dm6]	C	T	1.174e^-4	0.741	INTERGENIC
2R	5452090	2R_5452090_SNP [dm3] 2R_9564585_SNP [dm6]	G	A	1.179e^-4	0.741	DOWNSTREAM CG1809 EXON CR45281	TF binding site mE1_TFBS_HSA
3R	16223452	3R_16223452_SNP [dm3] 3R_20397730_SNP [dm6]	G	A	1.179e^-4	0.741	INTRON Gfrl
2L	11390749	2L_11390749_SNP [dm3] 2L_11390749_SNP [dm6]	C	A	1.184e^-4	0.741	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
X	14235853	X_14235853_SNP [dm3] X_14341820_SNP [dm6]	T	C	1.185e^-4	0.741	INTRON dpr8
2L	7578199	2L_7578199_DEL [dm3] 2L_7578199_DEL [dm6]	GAA	T	1.191e^-4	0.741	INTRON RapGAP1
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	1.196e^-4	0.741	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	19323718	3R_19323718_DEL [dm3] 3R_23497996_DEL [dm6]	TCTGTGGGTCAGATTGACCG...	T	1.217e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11819360	3L_11819360_SNP [dm3] 3L_11826260_SNP [dm6]	C	T	1.217e^-4	0.741	UPSTREAM CG32095 DOWNSTREAM CycA INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10352369	2L_10352369_SNP [dm3] 2L_10352369_SNP [dm6]	A	G	1.226e^-4	0.741	UPSTREAM CG34367 INTRON CG34367
2R	11980005	2R_11980005_SNP [dm3] 2R_16092500_SNP [dm6]	T	C	1.238e^-4	0.741	INTRON Dg
3L	3591761	3L_3591761_SNP [dm3] 3L_3591761_SNP [dm6]	C	T	1.239e^-4	0.741	INTRON Eip63E
2R	14882347	2R_14882347_SNP [dm3] 2R_18994842_SNP [dm6]	A	T	1.243e^-4	0.741	INTRON tn EXON snoRNA:abba-a
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	1.248e^-4	0.741	INTRON Pdp1
3R	25078765	3R_25078765_SNP [dm3] 3R_29253043_SNP [dm6]	G	A	1.252e^-4	0.741	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	9622336	2L_9622336_SNP [dm3] 2L_9622336_SNP [dm6]	C	T	1.252e^-4	0.741	INTRON GlcAT-S
3L	10038862	3L_10038862_SNP [dm3] 3L_10045762_SNP [dm6]	A	G	1.253e^-4	0.741	INTRON dpr6
2L	7195840	2L_7195840_SNP [dm3] 2L_7195840_SNP [dm6]	G	A	1.253e^-4	0.741	SYNONYMOUS_CODING CG4502
2L	7924503	2L_7924503_SNP [dm3] 2L_7924503_SNP [dm6]	C	A	1.267e^-4	0.741	INTRON Snoo
X	14217212	X_14217212_SNP [dm3] X_14323179_SNP [dm6]	C	A	1.275e^-4	0.741	INTRON dpr8	TF binding site BDTNP1_TFBS_da
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	1.280e^-4	0.741	INTRON CG42747
X	7784118	X_7784118_SNP [dm3] X_7890085_SNP [dm6]	G	A	1.288e^-4	0.741	NON_SYNONYMOUS_CODING Nek2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	3063953	2R_3063953_SNP [dm3] 2R_7176448_SNP [dm6]	A	G	1.291e^-4	0.741	SYNONYMOUS_CODING CG11060 INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23887438	3R_23887438_SNP [dm3] 3R_28061716_SNP [dm6]	A	C	1.292e^-4	0.741	INTRON CG34362
3L	11178271	3L_11178271_SNP [dm3] 3L_11185171_SNP [dm6]	A	T	1.294e^-4	0.741	INTRON GlcAT-P
2L	2549863	2L_2549863_SNP [dm3] 2L_2549863_SNP [dm6]	A	G	1.304e^-4	0.741	INTERGENIC
2L	10732387	2L_10732387_SNP [dm3] 2L_10732387_SNP [dm6]	C	T	1.318e^-4	0.741	UTR_5_PRIME CG6750 UPSTREAM Dpy-30L1 DOWNSTREAM Nup107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	12529413	2L_12529413_SNP [dm3] 2L_12529413_SNP [dm6]	G	A	1.319e^-4	0.741	INTRON bun	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16955221	2R_16955221_SNP [dm3] 2R_21067716_SNP [dm6]	A	T	1.320e^-4	0.741	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	1.334e^-4	0.741	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13289862	3R_13289862_DEL [dm3] 3R_17464140_DEL [dm6]	TAAGA	T	1.345e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14145413	3R_14145413_SNP [dm3] 3R_18319691_SNP [dm6]	T	C	1.347e^-4	0.741	INTRON CG31235
2R	15039176	2R_15039176_SNP [dm3] 2R_19151671_SNP [dm6]	G	A	1.351e^-4	0.741	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4169369	3L_4169369_SNP [dm3] 3L_4169369_SNP [dm6]	G	A	1.354e^-4	0.741	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	9005730	3L_9005730_SNP [dm3] 3L_9012630_SNP [dm6]	G	A	1.355e^-4	0.741	DOWNSTREAM Doc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2096576	2L_2096576_SNP [dm3] 2L_2096576_SNP [dm6]	G	T	1.360e^-4	0.741	INTRON dpr3
2L	3880414	2L_3880414_SNP [dm3] 2L_3880414_SNP [dm6]	A	G	1.368e^-4	0.741	UPSTREAM capu INTRON capu
2R	15392044	2R_15392044_SNP [dm3] 2R_19504539_SNP [dm6]	C	A	1.370e^-4	0.741	UTR_3_PRIME CG11007 UPSTREAM CR44472 DOWNSTREAM CG11007
2L	10691045	2L_10691045_SNP [dm3] 2L_10691045_SNP [dm6]	C	T	1.376e^-4	0.741	INTERGENIC
2R	10623683	2R_10623683_SNP [dm3] 2R_14736178_SNP [dm6]	C	T	1.376e^-4	0.741	INTERGENIC
3L	21052568	3L_21052568_SNP [dm3] 3L_21059468_SNP [dm6]	A	C	1.378e^-4	0.741	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11490344	2L_11490344_SNP [dm3] 2L_11490344_SNP [dm6]	G	A	1.392e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13289849	3R_13289849_SNP [dm3] 3R_17464127_SNP [dm6]	C	G	1.393e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12529687	2L_12529687_SNP [dm3] 2L_12529687_SNP [dm6]	C	T	1.395e^-4	0.741	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14227975	X_14227975_INS [dm3] X_14333942_INS [dm6]	A	AA	1.396e^-4	0.741	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14228005	X_14228005_SNP [dm3] X_14333972_SNP [dm6]	A	G	1.396e^-4	0.741	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20384876	3L_20384876_SNP [dm3] 3L_20391776_SNP [dm6]	A	T	1.399e^-4	0.741	UTR_3_PRIME fbl & 1 other UPSTREAM CR43944 DOWNSTREAM fbl	TF binding site mE1_TFBS_HSA
3L	2239302	3L_2239302_SNP [dm3] 3L_2239302_SNP [dm6]	C	T	1.411e^-4	0.741	SYNONYMOUS_CODING ACXD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	21161973	X_21161973_SNP [dm3] X_21290946_SNP [dm6]	A	C	1.412e^-4	0.741	INTRON CG1494
3L	7224434	3L_7224434_SNP [dm3] 3L_7231334_SNP [dm6]	C	A	1.420e^-4	0.741	INTERGENIC
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	1.421e^-4	0.741	UPSTREAM CR44264 EXON CR45567
3R	9945461	3R_9945461_SNP [dm3] 3R_14119739_SNP [dm6]	G	A	1.424e^-4	0.741	UTR_3_PRIME Abi	TF binding site mE1_TFBS_cad
2L	22977725	2L_22977725_DEL [dm3] 2L_23084993_DEL [dm6]	GCCCGTTTG	G	1.426e^-4	0.741	INTERGENIC
2R	20263484	2R_20263484_SNP [dm3] 2R_24375961_SNP [dm6]	C	A	1.438e^-4	0.741	NON_SYNONYMOUS_CODING bs
2L	2709539	2L_2709539_SNP [dm3] 2L_2709539_SNP [dm6]	G	A	1.445e^-4	0.741	INTRON CG31690
2L	12768895	2L_12768895_DEL [dm3] 2L_12768895_DEL [dm6]	TTACTTGATAT...	T	1.449e^-4	0.741	INTERGENIC
3R	21330677	3R_21330677_SNP [dm3] 3R_25504955_SNP [dm6]	T	C	1.451e^-4	0.741	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7580171	2L_7580171_SNP [dm3] 2L_7580171_SNP [dm6]	T	G	1.451e^-4	0.741	INTERGENIC
3L	16730897	3L_16730897_SNP [dm3] 3L_16737797_SNP [dm6]	C	T	1.452e^-4	0.741	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16730900	3L_16730900_SNP [dm3] 3L_16737800_SNP [dm6]	T	C	1.452e^-4	0.741	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15392024	2R_15392024_SNP [dm3] 2R_19504519_SNP [dm6]	A	C	1.455e^-4	0.741	UTR_3_PRIME CG11007 UPSTREAM CR44472 DOWNSTREAM CG11007
2L	5114265	2L_5114265_SNP [dm3] 2L_5114265_SNP [dm6]	A	T	1.460e^-4	0.741	INTRON Msp300
2R	3519129	2R_3519129_SNP [dm3] 2R_7631624_SNP [dm6]	G	T	1.460e^-4	0.741	INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc
2R	4750026	2R_4750026_SNP [dm3] 2R_8862521_SNP [dm6]	A	G	1.463e^-4	0.741	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17386925	3R_17386925_SNP [dm3] 3R_21561203_SNP [dm6]	T	G	1.465e^-4	0.741	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	5034832	X_5034832_SNP [dm3] X_5140799_SNP [dm6]	G	C	1.468e^-4	0.741	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2L	12529499	2L_12529499_SNP [dm3] 2L_12529499_SNP [dm6]	G	A	1.470e^-4	0.741	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18983464	3R_18983464_SNP [dm3] 3R_23157742_SNP [dm6]	A	C	1.474e^-4	0.741	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4516531	3L_4516531_SNP [dm3] 3L_4516531_SNP [dm6]	T	C	1.476e^-4	0.741	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11905128	3R_11905128_SNP [dm3] 3R_16079406_SNP [dm6]	C	T	1.480e^-4	0.741	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	1.487e^-4	0.741	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11983348	3R_11983348_SNP [dm3] 3R_16157626_SNP [dm6]	T	A	1.490e^-4	0.741	UPSTREAM CG6006 INTRON CG6006
3L	10453622	3L_10453622_SNP [dm3] 3L_10460522_SNP [dm6]	T	C	1.503e^-4	0.741	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12106245	3L_12106245_SNP [dm3] 3L_12113145_SNP [dm6]	A	G	1.510e^-4	0.741	INTERGENIC
2L	10148363	2L_10148363_SNP [dm3] 2L_10148363_SNP [dm6]	G	T	1.513e^-4	0.741	INTRON CG44153 & 1 other
3L	7853417	3L_7853417_SNP [dm3] 3L_7860317_SNP [dm6]	A	G	1.513e^-4	0.741	INTRON Pdp1
X	8839960	X_8839960_SNP [dm3] X_8945927_SNP [dm6]	T	C	1.515e^-4	0.741	INTRON rdgA
3R	15488036	3R_15488036_SNP [dm3] 3R_19662314_SNP [dm6]	C	T	1.520e^-4	0.741	SYNONYMOUS_CODING ort
3R	19323752	3R_19323752_SNP [dm3] 3R_23498030_SNP [dm6]	T	A	1.523e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14228119	X_14228119_SNP [dm3] X_14334086_SNP [dm6]	C	A	1.525e^-4	0.741	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18133468	2R_18133468_SNP [dm3] 2R_22245963_SNP [dm6]	C	G	1.532e^-4	0.741	INTRON dve
2L	8371261	2L_8371261_SNP [dm3] 2L_8371261_SNP [dm6]	C	G	1.536e^-4	0.741	UPSTREAM CR45341 INTRON CG17292
2R	7068840	2R_7068840_SNP [dm3] 2R_11181335_SNP [dm6]	T	C	1.539e^-4	0.741	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7068847	2R_7068847_SNP [dm3] 2R_11181342_SNP [dm6]	A	T	1.539e^-4	0.741	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12475020	2R_12475020_SNP [dm3] 2R_16587515_SNP [dm6]	G	A	1.541e^-4	0.741	DOWNSTREAM RpLP2 INTRON CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7580177	2L_7580177_SNP [dm3] 2L_7580177_SNP [dm6]	G	C	1.545e^-4	0.741	INTERGENIC
2R	3348458	2R_3348458_SNP [dm3] 2R_7460953_SNP [dm6]	T	C	1.546e^-4	0.741	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
X	5724248	X_5724248_SNP [dm3] X_5830215_SNP [dm6]	C	T	1.547e^-4	0.741	INTRON CG15765
2R	7068898	2R_7068898_SNP [dm3] 2R_11181393_SNP [dm6]	A	G	1.555e^-4	0.741	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9447010	2L_9447010_SNP [dm3] 2L_9447010_SNP [dm6]	C	T	1.558e^-4	0.741	SPLICE_SITE_REGION numb INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	14429016	X_14429016_SNP [dm3] X_14534983_SNP [dm6]	T	C	1.563e^-4	0.741	INTERGENIC
2R	3348498	2R_3348498_SNP [dm3] 2R_7460993_SNP [dm6]	A	C	1.565e^-4	0.741	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	1.567e^-4	0.741	DOWNSTREAM PpN58A INTRON Fili
2L	7193895	2L_7193895_SNP [dm3] 2L_7193895_SNP [dm6]	T	G	1.568e^-4	0.741	INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
2L	13872533	2L_13872533_SNP [dm3] 2L_13872533_SNP [dm6]	C	G	1.577e^-4	0.741	INTRON CenG1A
3R	23499267	3R_23499267_SNP [dm3] 3R_27673545_SNP [dm6]	C	A	1.585e^-4	0.741	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4421119	3L_4421119_SNP [dm3] 3L_4421119_SNP [dm6]	C	T	1.588e^-4	0.741	UPSTREAM CG15020 DOWNSTREAM DOR INTERGENIC
2R	6586120	2R_6586120_SNP [dm3] 2R_10698615_SNP [dm6]	A	G	1.595e^-4	0.741	INTRON stan
2R	16225493	2R_16225493_SNP [dm3] 2R_20337988_SNP [dm6]	G	C	1.599e^-4	0.741	INTERGENIC
3R	19324274	3R_19324274_SNP [dm3] 3R_23498552_SNP [dm6]	G	A	1.601e^-4	0.741	INTERGENIC
2R	3068588	2R_3068588_SNP [dm3] 2R_7181083_SNP [dm6]	G	A	1.607e^-4	0.741	UPSTREAM CG30385 DOWNSTREAM CG33140 INTRON pk
2R	18074508	2R_18074508_SNP [dm3] 2R_22187003_SNP [dm6]	T	C	1.609e^-4	0.741	SYNONYMOUS_CODING Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12032101	2R_12032101_SNP [dm3] 2R_16144596_SNP [dm6]	T	A	1.610e^-4	0.741	SYNONYMOUS_CODING Aats-cys
2L	7193897	2L_7193897_SNP [dm3] 2L_7193897_SNP [dm6]	G	A	1.615e^-4	0.741	INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
2R	13046953	2R_13046953_INS [dm3] 2R_17159448_INS [dm6]	A	ACA	1.617e^-4	0.741	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
X	14213589	X_14213589_SNP [dm3] X_14319556_SNP [dm6]	G	A	1.620e^-4	0.741	INTERGENIC
2L	10064036	2L_10064036_DEL [dm3] 2L_10064036_DEL [dm6]	CAATCTTAC	C	1.621e^-4	0.741	DOWNSTREAM CG44153 & 1 other INTERGENIC
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	1.625e^-4	0.741	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
3R	8111200	3R_8111200_SNP [dm3] 3R_12285478_SNP [dm6]	T	A	1.632e^-4	0.741	INTRON svp
3L	9552632	3L_9552632_SNP [dm3] 3L_9559532_SNP [dm6]	T	C	1.634e^-4	0.741	INTRON CG42673
2L	2575057	2L_2575057_SNP [dm3] 2L_2575057_SNP [dm6]	A	C	1.646e^-4	0.741	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	14217871	X_14217871_SNP [dm3] X_14323838_SNP [dm6]	C	G	1.648e^-4	0.741	INTRON dpr8
2R	17807287	2R_17807287_SNP [dm3] 2R_21919782_SNP [dm6]	A	G	1.649e^-4	0.741	INTRON Fili
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	1.654e^-4	0.741	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	1.654e^-4	0.741	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	1.654e^-4	0.741	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	1.654e^-4	0.741	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	1.654e^-4	0.741	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	1.654e^-4	0.741	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	1.654e^-4	0.741	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	1.654e^-4	0.741	SYNONYMOUS_CODING emb
2R	13046977	2R_13046977_SNP [dm3] 2R_17159472_SNP [dm6]	A	G	1.656e^-4	0.741	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
3R	8482527	3R_8482527_SNP [dm3] 3R_12656805_SNP [dm6]	T	G	1.661e^-4	0.741	UTR_5_PRIME CG6225
2L	9252575	2L_9252575_SNP [dm3] 2L_9252575_SNP [dm6]	G	T	1.666e^-4	0.741	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5880798	3L_5880798_SNP [dm3] 3L_5887698_SNP [dm6]	G	A	1.667e^-4	0.741	INTERGENIC
2R	3038378	2R_3038378_SNP [dm3] 2R_7150873_SNP [dm6]	G	T	1.675e^-4	0.741	UTR_5_PRIME pk DOWNSTREAM CR44200 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	1.682e^-4	0.741	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23614315	3R_23614315_SNP [dm3] 3R_27788593_SNP [dm6]	G	A	1.683e^-4	0.741	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	20226418	2R_20226418_SNP [dm3] 2R_24338895_SNP [dm6]	C	T	1.696e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7479621	2L_7479621_SNP [dm3] 2L_7479621_SNP [dm6]	A	G	1.700e^-4	0.741	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad
3L	20380302	3L_20380302_DEL [dm3] 3L_20387202_DEL [dm6]	AA	A	1.702e^-4	0.741	UPSTREAM fbl INTRON fbl	TF binding site mE1_TFBS_inv
2L	15100047	2L_15100047_SNP [dm3] 2L_15100047_SNP [dm6]	T	C	1.705e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2753434	2R_2753434_DEL [dm3] 2R_6865929_DEL [dm6]	AT	A	1.712e^-4	0.741	INTRON coro
3L	19695912	3L_19695912_INS [dm3] 3L_19702812_INS [dm6]	A	ATGTA	1.713e^-4	0.741	INTRON serp
2R	11214152	2R_11214152_SNP [dm3] 2R_15326647_SNP [dm6]	C	T	1.717e^-4	0.741	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
X	14215569	X_14215569_SNP [dm3] X_14321536_SNP [dm6]	G	A	1.720e^-4	0.741	UPSTREAM dpr8 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7068863	2R_7068863_SNP [dm3] 2R_11181358_SNP [dm6]	G	A	1.720e^-4	0.741	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4646835	2R_4646835_SNP [dm3] 2R_8759330_SNP [dm6]	C	A	1.721e^-4	0.741	UTR_3_PRIME CG8740	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	12533319	3R_12533319_SNP [dm3] 3R_16707597_SNP [dm6]	A	T	1.721e^-4	0.741	INTRON Ubx
2L	2575056	2L_2575056_SNP [dm3] 2L_2575056_SNP [dm6]	C	A	1.721e^-4	0.741	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10686848	3R_10686848_SNP [dm3] 3R_14861126_SNP [dm6]	C	A	1.722e^-4	0.741	INTRON btsz
2R	12477106	2R_12477106_SNP [dm3] 2R_16589601_SNP [dm6]	G	A	1.722e^-4	0.741	UTR_3_PRIME CG8306 UPSTREAM CG8311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8257090	3L_8257090_SNP [dm3] 3L_8263990_SNP [dm6]	C	G	1.724e^-4	0.741	INTRON Dscam4
3R	26142964	3R_26142964_INS [dm3] 3R_30317242_INS [dm6]	T	TGT	1.737e^-4	0.741	INTRON hdc
2R	3787356	2R_3787356_SNP [dm3] 2R_7899851_SNP [dm6]	A	C	1.738e^-4	0.741	INTRON CG30377
2R	15391766	2R_15391766_SNP [dm3] 2R_19504261_SNP [dm6]	A	C	1.738e^-4	0.741	UTR_3_PRIME CG11007 UPSTREAM CR44472
2L	6274008	2L_6274008_SNP [dm3] 2L_6274008_SNP [dm6]	G	A	1.747e^-4	0.741	INTRON Ddr
2L	9621108	2L_9621108_SNP [dm3] 2L_9621108_SNP [dm6]	C	T	1.747e^-4	0.741	INTRON GlcAT-S
2R	14451281	2R_14451281_SNP [dm3] 2R_18563776_SNP [dm6]	A	T	1.748e^-4	0.741	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	9955814	2R_9955814_SNP [dm3] 2R_14068309_SNP [dm6]	G	T	1.750e^-4	0.741	INTRON Prosap
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	1.751e^-4	0.741	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	12764821	2L_12764821_SNP [dm3] 2L_12764821_SNP [dm6]	C	T	1.752e^-4	0.741	INTERGENIC
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	1.752e^-4	0.741	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
3R	9956982	3R_9956982_SNP [dm3] 3R_14131260_SNP [dm6]	A	T	1.754e^-4	0.741	INTRON CG14356	TF binding site mE1_TFBS_cad
3R	13289747	3R_13289747_SNP [dm3] 3R_17464025_SNP [dm6]	G	A	1.760e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11201213	2L_11201213_SNP [dm3] 2L_11201213_SNP [dm6]	C	T	1.763e^-4	0.741	INTRON Ca-beta
3R	7586354	3R_7586354_SNP [dm3] 3R_11760632_SNP [dm6]	G	A	1.765e^-4	0.741	UPSTREAM Lk6 INTRON Lk6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10937320	2L_10937320_SNP [dm3] 2L_10937320_SNP [dm6]	C	T	1.768e^-4	0.741	UTR_5_PRIME CG14072 UPSTREAM CG14072 INTRON dpr2
2L	2575097	2L_2575097_SNP [dm3] 2L_2575097_SNP [dm6]	G	A	1.773e^-4	0.741	UPSTREAM Rad1 & 1 other DOWNSTREAM insv INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9308579	2R_9308579_SNP [dm3] 2R_13421074_SNP [dm6]	C	T	1.782e^-4	0.741	SYNONYMOUS_CODING CG42321
3L	11118422	3L_11118422_SNP [dm3] 3L_11125322_SNP [dm6]	A	T	1.784e^-4	0.741	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	7146957	2L_7146957_SNP [dm3] 2L_7146957_SNP [dm6]	C	A	1.784e^-4	0.741	INTRON Pvf3
2R	15391322	2R_15391322_SNP [dm3] 2R_19503817_SNP [dm6]	A	C	1.789e^-4	0.741	SYNONYMOUS_CODING CG11007 UPSTREAM CR44472	TF binding site mE1_TFBS_sens
2L	11491010	2L_11491010_SNP [dm3] 2L_11491010_SNP [dm6]	G	A	1.791e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15391340	2R_15391340_SNP [dm3] 2R_19503835_SNP [dm6]	A	G	1.793e^-4	0.741	SYNONYMOUS_CODING CG11007 UPSTREAM CR44472	TF binding site mE1_TFBS_sens
3R	25027980	3R_25027980_SNP [dm3] 3R_29202258_SNP [dm6]	G	A	1.802e^-4	0.743	SYNONYMOUS_CODING Mesh1 DOWNSTREAM CG14508 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15318102	2R_15318102_SNP [dm3] 2R_19430597_SNP [dm6]	A	G	1.809e^-4	0.743	DOWNSTREAM Fak & 1 other INTERGENIC
2R	20190213	2R_20190213_SNP [dm3] 2R_24302690_SNP [dm6]	T	A	1.811e^-4	0.743	INTERGENIC
2R	7068829	2R_7068829_SNP [dm3] 2R_11181324_SNP [dm6]	T	C	1.825e^-4	0.744	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7153352	2L_7153352_SNP [dm3] 2L_7153352_SNP [dm6]	T	A	1.825e^-4	0.744	INTRON Pvf3
2L	7153362	2L_7153362_SNP [dm3] 2L_7153362_SNP [dm6]	A	G	1.825e^-4	0.744	INTRON Pvf3
2L	11494703	2L_11494703_SNP [dm3] 2L_11494703_SNP [dm6]	G	T	1.836e^-4	0.745	INTERGENIC
3R	10728938	3R_10728938_SNP [dm3] 3R_14903216_SNP [dm6]	C	G	1.838e^-4	0.745	UTR_3_PRIME VhaPPA1-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	1.843e^-4	0.745	UTR_3_PRIME bol
2R	14262138	2R_14262138_SNP [dm3] 2R_18374633_SNP [dm6]	C	A	1.846e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	1.848e^-4	0.745	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12598824	3R_12598824_SNP [dm3] 3R_16773102_SNP [dm6]	G	A	1.851e^-4	0.745	EXON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12767836	2L_12767836_SNP [dm3] 2L_12767836_SNP [dm6]	A	T	1.874e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_Stat92E
X	7782659	X_7782659_SNP [dm3] X_7888626_SNP [dm6]	A	C	1.875e^-4	0.746	NON_SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15269377	X_15269377_SNP [dm3] X_15375344_SNP [dm6]	A	G	1.875e^-4	0.746	INTRON acj6
3R	15488105	3R_15488105_SNP [dm3] 3R_19662383_SNP [dm6]	A	G	1.881e^-4	0.746	SYNONYMOUS_CODING ort	TF binding site mE1_TFBS_HSA
3L	11178266	3L_11178266_SNP [dm3] 3L_11185166_SNP [dm6]	C	T	1.882e^-4	0.746	INTRON GlcAT-P
2R	20503027	2R_20503027_SNP [dm3] 2R_24615504_SNP [dm6]	T	A	1.889e^-4	0.746	UTR_3_PRIME CG13594 UPSTREAM CG4741
2R	7513015	2R_7513015_SNP [dm3] 2R_11625510_SNP [dm6]	A	G	1.891e^-4	0.746	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	9147069	2L_9147069_SNP [dm3] 2L_9147069_SNP [dm6]	C	T	1.892e^-4	0.746	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9988855	3L_9988855_SNP [dm3] 3L_9995755_SNP [dm6]	A	T	1.896e^-4	0.746	INTRON dpr6
3L	7853415	3L_7853415_SNP [dm3] 3L_7860315_SNP [dm6]	G	A	1.897e^-4	0.746	INTRON Pdp1
2R	17982565	2R_17982565_SNP [dm3] 2R_22095060_SNP [dm6]	A	C	1.897e^-4	0.746	INTRON CG11073
2R	11502756	2R_11502756_SNP [dm3] 2R_15615251_SNP [dm6]	A	T	1.908e^-4	0.746	NON_SYNONYMOUS_CODING CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11502761	2R_11502761_SNP [dm3] 2R_15615256_SNP [dm6]	T	A	1.908e^-4	0.746	NON_SYNONYMOUS_CODING CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26893170	3R_26893170_SNP [dm3] 3R_31067448_SNP [dm6]	A	T	1.914e^-4	0.746	INTRON Sox100B
2L	12549606	2L_12549606_SNP [dm3] 2L_12549606_SNP [dm6]	T	C	1.915e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11179065	3L_11179065_SNP [dm3] 3L_11185965_SNP [dm6]	G	A	1.918e^-4	0.746	INTRON GlcAT-P
2L	3697726	2L_3697726_SNP [dm3] 2L_3697726_SNP [dm6]	G	C	1.927e^-4	0.746	NON_SYNONYMOUS_CODING CG3604 DOWNSTREAM CG10031
X	1344476	X_1344476_SNP [dm3] X_1450443_SNP [dm6]	G	A	1.928e^-4	0.746	UTR_3_PRIME futsch
X	14214759	X_14214759_SNP [dm3] X_14320726_SNP [dm6]	C	A	1.931e^-4	0.746	INTERGENIC
2L	20804806	2L_20804806_SNP [dm3] 2L_20804806_SNP [dm6]	G	C	1.932e^-4	0.746	INTRON CG9328
2R	6978839	2R_6978839_SNP [dm3] 2R_11091334_SNP [dm6]	C	A	1.938e^-4	0.746	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	1.943e^-4	0.747	UPSTREAM CR45374 INTERGENIC
3R	15488123	3R_15488123_SNP [dm3] 3R_19662401_SNP [dm6]	T	C	1.949e^-4	0.747	SYNONYMOUS_CODING ort	TF binding site mE1_TFBS_HSA
3R	25021761	3R_25021761_SNP [dm3] 3R_29196039_SNP [dm6]	G	A	1.951e^-4	0.747	INTERGENIC
3L	10294712	3L_10294712_SNP [dm3] 3L_10301612_SNP [dm6]	G	A	1.957e^-4	0.747	INTERGENIC
2L	1102673	2L_1102673_SNP [dm3] 2L_1102673_SNP [dm6]	T	A	1.967e^-4	0.747	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
2L	5114176	2L_5114176_SNP [dm3] 2L_5114176_SNP [dm6]	A	C	1.971e^-4	0.747	INTRON Msp300
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	1.972e^-4	0.747	INTERGENIC
2R	3031816	2R_3031816_SNP [dm3] 2R_7144311_SNP [dm6]	C	A	1.973e^-4	0.747	INTERGENIC
2L	8371525	2L_8371525_INS [dm3] 2L_8371525_INS [dm6]	A	ATGGGCCTCAAAAA...	1.977e^-4	0.747	UPSTREAM CR45341 & 1 other INTRON CG17292
2R	14222040	2R_14222040_INS [dm3] 2R_18334535_INS [dm6]	A	AAAATCACATA...	1.985e^-4	0.747	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16613120	X_16613120_SNP [dm3] X_16719087_SNP [dm6]	C	T	1.992e^-4	0.747	INTRON CG34325
X	16613138	X_16613138_SNP [dm3] X_16719105_SNP [dm6]	G	A	1.992e^-4	0.747	INTRON CG34325
3R	11995783	3R_11995783_SNP [dm3] 3R_16170061_SNP [dm6]	A	C	1.995e^-4	0.747	UPSTREAM CR43472 INTRON CG6006	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10038156	2L_10038156_SNP [dm3] 2L_10038156_SNP [dm6]	G	A	2.001e^-4	0.747	INTRON obst-B
2R	18448596	2R_18448596_SNP [dm3] 2R_22561091_SNP [dm6]	A	G	2.005e^-4	0.747	UTR_5_PRIME px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	13119388	2R_13119388_SNP [dm3] 2R_17231883_SNP [dm6]	C	G	2.008e^-4	0.747	INTRON mbl
2R	13270325	2R_13270325_SNP [dm3] 2R_17382820_SNP [dm6]	C	G	2.011e^-4	0.747	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19679669	2R_19679669_SNP [dm3] 2R_23792146_SNP [dm6]	A	T	2.014e^-4	0.747	UPSTREAM CG15800 INTRON CG9850
2R	14262125	2R_14262125_SNP [dm3] 2R_18374620_SNP [dm6]	A	T	2.016e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4912742	2L_4912742_SNP [dm3] 2L_4912742_SNP [dm6]	G	A	2.019e^-4	0.747	SYNONYMOUS_CODING hoe1 UTR_5_PRIME hoe1
X	21161982	X_21161982_SNP [dm3] X_21290955_SNP [dm6]	G	C	2.032e^-4	0.75	INTRON CG1494
3L	16628582	3L_16628582_SNP [dm3] 3L_16635482_SNP [dm6]	A	T	2.036e^-4	0.75	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21593339	3R_21593339_SNP [dm3] 3R_25767617_SNP [dm6]	G	A	2.047e^-4	0.75	INTERGENIC
3R	12598822	3R_12598822_SNP [dm3] 3R_16773100_SNP [dm6]	T	A	2.047e^-4	0.75	EXON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	14206098	X_14206098_INS [dm3] X_14312065_INS [dm6]	T	GACTTTTA	2.047e^-4	0.75	INTERGENIC
3R	18333329	3R_18333329_INS [dm3] 3R_22507607_INS [dm6]	C	TTTG	2.060e^-4	0.752	INTRON Octbeta1R
2L	7577996	2L_7577996_SNP [dm3] 2L_7577996_SNP [dm6]	G	A	2.064e^-4	0.752	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	7782512	X_7782512_SNP [dm3] X_7888479_SNP [dm6]	A	G	2.067e^-4	0.752	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20382889	3L_20382889_SNP [dm3] 3L_20389789_SNP [dm6]	C	G	2.074e^-4	0.752	DOWNSTREAM CR43944 INTRON fbl
X	13221310	X_13221310_SNP [dm3] X_13327277_SNP [dm6]	T	A	2.077e^-4	0.752	INTRON IP3K2
2L	9207313	2L_9207313_SNP [dm3] 2L_9207313_SNP [dm6]	A	T	2.080e^-4	0.752	INTRON tai
3L	7899325	3L_7899325_SNP [dm3] 3L_7906225_SNP [dm6]	C	G	2.095e^-4	0.752	INTRON pbl
2L	15461848	2L_15461848_SNP [dm3] 2L_15461848_SNP [dm6]	A	G	2.098e^-4	0.752	INTERGENIC
2R	3348324	2R_3348324_SNP [dm3] 2R_7460819_SNP [dm6]	T	C	2.099e^-4	0.752	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2L	11503822	2L_11503822_SNP [dm3] 2L_11503822_SNP [dm6]	G	A	2.106e^-4	0.752	INTRON spz4
2L	7478418	2L_7478418_SNP [dm3] 2L_7478418_SNP [dm6]	C	T	2.109e^-4	0.752	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6572924	3R_6572924_SNP [dm3] 3R_10747202_SNP [dm6]	T	A	2.116e^-4	0.752	INTRON TkR86C
2L	10983991	2L_10983991_SNP [dm3] 2L_10983991_SNP [dm6]	G	A	2.125e^-4	0.752	SYNONYMOUS_CODING piwi
2R	6387735	2R_6387735_SNP [dm3] 2R_10500230_SNP [dm6]	A	G	2.129e^-4	0.752	UTR_3_PRIME lola INTRON lola
2L	20830618	2L_20830618_SNP [dm3] 2L_20830618_SNP [dm6]	A	T	2.146e^-4	0.752	SPLICE_SITE_REGION CG31673 UPSTREAM CG31674 INTRON CG31673
3R	11081443	3R_11081443_SNP [dm3] 3R_15255721_SNP [dm6]	A	G	2.147e^-4	0.752	UTR_3_PRIME CG42404
3L	9977057	3L_9977057_SNP [dm3] 3L_9983957_SNP [dm6]	T	C	2.150e^-4	0.752	INTRON dpr6
2R	10037	2R_10037_SNP [dm3] 2R_4122532_SNP [dm6]	A	C	2.151e^-4	0.752	INTERGENIC
3R	6570565	3R_6570565_SNP [dm3] 3R_10744843_SNP [dm6]	T	G	2.154e^-4	0.752	INTRON TkR86C
3L	7853443	3L_7853443_SNP [dm3] 3L_7860343_SNP [dm6]	G	A	2.154e^-4	0.752	INTRON Pdp1
3L	9851032	3L_9851032_SNP [dm3] 3L_9857932_SNP [dm6]	G	A	2.156e^-4	0.752	UTR_3_PRIME CG10809
2L	10352367	2L_10352367_SNP [dm3] 2L_10352367_SNP [dm6]	A	C	2.162e^-4	0.752	UPSTREAM CG34367 INTRON CG34367
2R	9335684	2R_9335684_SNP [dm3] 2R_13448179_SNP [dm6]	A	C	2.175e^-4	0.752	INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	4957208	3R_4957208_SNP [dm3] 3R_9131486_SNP [dm6]	A	C	2.175e^-4	0.752	INTRON pum	TF binding site mE1_TFBS_cad
2L	16171387	2L_16171387_SNP [dm3] 2L_16171387_SNP [dm6]	T	G	2.176e^-4	0.752	INTRON Ca-alpha1D
2R	4727334	2R_4727334_SNP [dm3] 2R_8839829_SNP [dm6]	A	T	2.176e^-4	0.752	INTRON sns
2L	11518142	2L_11518142_SNP [dm3] 2L_11518142_SNP [dm6]	A	G	2.183e^-4	0.752	SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
X	14224829	X_14224829_SNP [dm3] X_14330796_SNP [dm6]	G	A	2.188e^-4	0.752	INTRON dpr8
2L	13599040	2L_13599040_SNP [dm3] 2L_13599040_SNP [dm6]	A	T	2.189e^-4	0.752	INTRON kuz
2L	7394850	2L_7394850_SNP [dm3] 2L_7394850_SNP [dm6]	A	G	2.190e^-4	0.752	INTRON CG5160
2R	17301624	2R_17301624_SNP [dm3] 2R_21414119_SNP [dm6]	A	C	2.198e^-4	0.752	INTRON Sdc
2L	7196077	2L_7196077_SNP [dm3] 2L_7196077_SNP [dm6]	G	A	2.200e^-4	0.752	INTRON CG4502
2R	9356794	2R_9356794_SNP [dm3] 2R_13469289_SNP [dm6]	A	C	2.204e^-4	0.752	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	11797286	2R_11797286_SNP [dm3] 2R_15909781_SNP [dm6]	C	G	2.207e^-4	0.752	INTRON sli	TF binding site mE1_TFBS_inv
2R	13119407	2R_13119407_DEL [dm3] 2R_17231902_DEL [dm6]	CTTGAACATTTTATCAGC...	C	2.208e^-4	0.752	INTRON mbl
2L	3114677	2L_3114677_SNP [dm3] 2L_3114677_SNP [dm6]	T	G	2.210e^-4	0.752	INTRON toc
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	2.210e^-4	0.752	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1792315	2L_1792315_SNP [dm3] 2L_1792315_SNP [dm6]	T	G	2.210e^-4	0.752	SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c	regulatory region REDfly_CRMs
2R	16353348	2R_16353348_SNP [dm3] 2R_20465843_SNP [dm6]	G	A	2.210e^-4	0.752	INTRON CG12484
3R	10708348	3R_10708348_SNP [dm3] 3R_14882626_SNP [dm6]	A	C	2.217e^-4	0.752	UTR_3_PRIME CG3631 & 1 other	TF binding site mE1_TFBS_HSA
2L	10777441	2L_10777441_SNP [dm3] 2L_10777441_SNP [dm6]	G	A	2.220e^-4	0.752	INTRON CG31869
3L	9305330	3L_9305330_SNP [dm3] 3L_9312230_SNP [dm6]	A	T	2.222e^-4	0.752	INTERGENIC
2R	4526554	2R_4526554_SNP [dm3] 2R_8639049_SNP [dm6]	C	A	2.226e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	8839978	X_8839978_SNP [dm3] X_8945945_SNP [dm6]	G	T	2.228e^-4	0.752	INTRON rdgA
2R	5028327	2R_5028327_SNP [dm3] 2R_9140822_SNP [dm6]	G	T	2.233e^-4	0.752	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	17301627	2R_17301627_SNP [dm3] 2R_21414122_SNP [dm6]	G	C	2.249e^-4	0.755	INTRON Sdc
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	2.250e^-4	0.755	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
3R	21593255	3R_21593255_SNP [dm3] 3R_25767533_SNP [dm6]	T	A	2.258e^-4	0.756	INTERGENIC
2R	6581418	2R_6581418_DEL [dm3] 2R_10693913_DEL [dm6]	GGGTTCTCGGGTTCAAGGCA...	G	2.260e^-4	0.756	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	17190466	2R_17190466_SNP [dm3] 2R_21302961_SNP [dm6]	A	G	2.268e^-4	0.756	INTRON CG42672
2L	7117522	2L_7117522_DEL [dm3] 2L_7117522_DEL [dm6]	CC	C	2.270e^-4	0.756	INTRON Pvf3
3R	18984941	3R_18984941_SNP [dm3] 3R_23159219_SNP [dm6]	C	G	2.273e^-4	0.756	SYNONYMOUS_CODING VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12100645	2L_12100645_SNP [dm3] 2L_12100645_SNP [dm6]	G	T	2.286e^-4	0.757	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
2L	9621458	2L_9621458_SNP [dm3] 2L_9621458_SNP [dm6]	A	T	2.289e^-4	0.757	INTRON GlcAT-S
2L	12767553	2L_12767553_SNP [dm3] 2L_12767553_SNP [dm6]	A	T	2.293e^-4	0.757	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	7583945	3R_7583945_SNP [dm3] 3R_11758223_SNP [dm6]	C	T	2.293e^-4	0.757	INTRON Lk6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6264845	X_6264845_DEL [dm3] X_6370812_DEL [dm6]	GGG	G	2.295e^-4	0.757	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
3R	15488129	3R_15488129_SNP [dm3] 3R_19662407_SNP [dm6]	A	G	2.309e^-4	0.758	SYNONYMOUS_CODING ort	TF binding site mE1_TFBS_HSA
3L	2236895	3L_2236895_SNP [dm3] 3L_2236895_SNP [dm6]	G	A	2.311e^-4	0.758	SYNONYMOUS_CODING CG9018 UPSTREAM ACXD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	17142169	X_17142169_SNP [dm3] X_17248136_SNP [dm6]	T	G	2.317e^-4	0.758	DOWNSTREAM CG8675 INTRON f
2R	10707274	2R_10707274_SNP [dm3] 2R_14819769_SNP [dm6]	A	G	2.318e^-4	0.758	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1093054	2L_1093054_INS [dm3] 2L_1093054_INS [dm6]	A	ACA	2.325e^-4	0.758	INTRON CG4629
3L	1360444	3L_1360444_SNP [dm3] 3L_1360444_SNP [dm6]	G	T	2.335e^-4	0.758	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7781624	X_7781624_SNP [dm3] X_7887591_SNP [dm6]	A	G	2.339e^-4	0.758	SYNONYMOUS_CODING CG10932 DOWNSTREAM Ir7g	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	7068846	2R_7068846_SNP [dm3] 2R_11181341_SNP [dm6]	G	A	2.343e^-4	0.758	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18712375	2R_18712375_SNP [dm3] 2R_22824852_SNP [dm6]	A	C	2.344e^-4	0.758	UPSTREAM CG30274 & 1 other INTRON CG42284
2L	7193931	2L_7193931_SNP [dm3] 2L_7193931_SNP [dm6]	A	T	2.345e^-4	0.758	DOWNSTREAM CG4502 INTRON CG4497	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2L	8345775	2L_8345775_SNP [dm3] 2L_8345775_SNP [dm6]	G	C	2.347e^-4	0.758	UPSTREAM CR45371 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
X	21161926	X_21161926_SNP [dm3] X_21290899_SNP [dm6]	T	G	2.351e^-4	0.758	INTRON CG1494
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	2.357e^-4	0.758	INTRON Octbeta3R
X	8407760	X_8407760_SNP [dm3] X_8513727_SNP [dm6]	A	G	2.368e^-4	0.758	INTRON CG33181
3R	9956960	3R_9956960_SNP [dm3] 3R_14131238_SNP [dm6]	G	T	2.368e^-4	0.758	INTRON CG14356	TF binding site mE1_TFBS_cad
2R	17992290	2R_17992290_SNP [dm3] 2R_22104785_SNP [dm6]	T	C	2.373e^-4	0.758	SPLICE_SITE_REGION CG6613 INTRON CG6613
2R	18445621	2R_18445621_SNP [dm3] 2R_22558116_SNP [dm6]	A	T	2.381e^-4	0.758	INTRON px
2L	7006796	2L_7006796_SNP [dm3] 2L_7006796_SNP [dm6]	A	T	2.387e^-4	0.758	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8626603	2L_8626603_SNP [dm3] 2L_8626603_SNP [dm6]	G	C	2.388e^-4	0.758	INTRON Sema-1a
2R	7968643	2R_7968643_SNP [dm3] 2R_12081138_SNP [dm6]	G	A	2.391e^-4	0.758	UPSTREAM CG13186 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11249964	2L_11249964_SNP [dm3] 2L_11249964_SNP [dm6]	T	C	2.406e^-4	0.758	INTRON ab
X	21850004	X_21850004_SNP [dm3] X_22448168_SNP [dm6]	G	A	2.410e^-4	0.758	DOWNSTREAM CG14621 INTRON CG14615
2L	10352311	2L_10352311_DEL [dm3] 2L_10352311_DEL [dm6]	GG	C	2.415e^-4	0.758	UPSTREAM CG34367 INTRON CG34367
2R	6982489	2R_6982489_SNP [dm3] 2R_11094984_SNP [dm6]	T	C	2.416e^-4	0.758	INTRON luna	TF binding site mE1_TFBS_sens
2R	6936475	2R_6936475_SNP [dm3] 2R_11048970_SNP [dm6]	A	G	2.420e^-4	0.758	INTRON luna
2R	3519958	2R_3519958_SNP [dm3] 2R_7632453_SNP [dm6]	C	T	2.422e^-4	0.758	UPSTREAM CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6449202	3L_6449202_SNP [dm3] 3L_6456102_SNP [dm6]	T	C	2.423e^-4	0.758	INTRON CG42747
2L	2186921	2L_2186921_SNP [dm3] 2L_2186921_SNP [dm6]	T	C	2.426e^-4	0.758	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6402061	2L_6402061_SNP [dm3] 2L_6402061_SNP [dm6]	C	G	2.432e^-4	0.758	INTRON CG42368
2L	13997580	2L_13997580_SNP [dm3] 2L_13997580_SNP [dm6]	G	A	2.444e^-4	0.758	INTRON rk
2R	13119393	2R_13119393_SNP [dm3] 2R_17231888_SNP [dm6]	C	G	2.448e^-4	0.758	INTRON mbl
2L	11160633	2L_11160633_SNP [dm3] 2L_11160633_SNP [dm6]	T	A	2.450e^-4	0.758	INTRON Ca-beta
X	5388986	X_5388986_SNP [dm3] X_5494953_SNP [dm6]	T	C	2.456e^-4	0.758	SYNONYMOUS_CODING frma DOWNSTREAM SPR
2R	14973529	2R_14973529_SNP [dm3] 2R_19086024_SNP [dm6]	G	C	2.462e^-4	0.758	INTRON 5-HT1A
3L	10298570	3L_10298570_SNP [dm3] 3L_10305470_SNP [dm6]	A	G	2.463e^-4	0.758	INTERGENIC
2R	14513513	2R_14513513_SNP [dm3] 2R_18626008_SNP [dm6]	G	A	2.466e^-4	0.758	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
X	21161978	X_21161978_SNP [dm3] X_21290951_SNP [dm6]	T	C	2.468e^-4	0.758	INTRON CG1494
3R	11903736	3R_11903736_SNP [dm3] 3R_16078014_SNP [dm6]	A	T	2.471e^-4	0.758	DOWNSTREAM CG32855 INTRON Mhcl
3R	18974847	3R_18974847_SNP [dm3] 3R_23149125_SNP [dm6]	T	C	2.472e^-4	0.758	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	2.493e^-4	0.758	INTERGENIC
2R	12317036	2R_12317036_SNP [dm3] 2R_16429531_SNP [dm6]	C	T	2.510e^-4	0.758	INTRON Sema-2b
3R	15218200	3R_15218200_SNP [dm3] 3R_19392478_SNP [dm6]	T	C	2.512e^-4	0.758	UPSTREAM CG3739 DOWNSTREAM CG18493 INTRON Ino80
3L	7820556	3L_7820556_SNP [dm3] 3L_7827456_SNP [dm6]	T	G	2.517e^-4	0.758	INTRON Pdp1
2L	13605939	2L_13605939_SNP [dm3] 2L_13605939_SNP [dm6]	G	A	2.527e^-4	0.758	INTRON kuz
2L	6401293	2L_6401293_SNP [dm3] 2L_6401293_SNP [dm6]	A	T	2.528e^-4	0.758	INTRON CG42368
3L	9988932	3L_9988932_SNP [dm3] 3L_9995832_SNP [dm6]	G	A	2.532e^-4	0.758	INTRON dpr6
2L	7019580	2L_7019580_SNP [dm3] 2L_7019580_SNP [dm6]	T	C	2.536e^-4	0.758	INTRON ade3
3L	8631682	3L_8631682_INS [dm3] 3L_8638582_INS [dm6]	A	ATA	2.547e^-4	0.758	UTR_3_PRIME Zasp66	TF binding site mE1_TFBS_cnc
2L	12766552	2L_12766552_SNP [dm3] 2L_12766552_SNP [dm6]	C	A	2.552e^-4	0.758	INTERGENIC
2R	19611990	2R_19611990_SNP [dm3] 2R_23724467_SNP [dm6]	A	G	2.562e^-4	0.758	INTRON Sesn
2R	9955807	2R_9955807_INS [dm3] 2R_14068302_INS [dm6]	C	CC	2.568e^-4	0.758	INTRON Prosap
2L	132010	2L_132010_SNP [dm3] 2L_132010_SNP [dm6]	A	C	2.568e^-4	0.758	UPSTREAM Gs1 INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	1324653	3L_1324653_SNP [dm3] 3L_1324653_SNP [dm6]	A	C	2.570e^-4	0.758	UPSTREAM Myo61F & 1 other INTRON Myo61F
3R	15487866	3R_15487866_SNP [dm3] 3R_19662144_SNP [dm6]	T	C	2.577e^-4	0.758	SYNONYMOUS_CODING ort
2L	7174958	2L_7174958_SNP [dm3] 2L_7174958_SNP [dm6]	T	G	2.583e^-4	0.758	UPSTREAM CR44610 INTERGENIC
3L	7853267	3L_7853267_SNP [dm3] 3L_7860167_SNP [dm6]	G	A	2.586e^-4	0.758	INTRON Pdp1
2R	20205885	2R_20205885_SNP [dm3] 2R_24318362_SNP [dm6]	A	C	2.594e^-4	0.758	INTERGENIC
2R	7072353	2R_7072353_SNP [dm3] 2R_11184848_SNP [dm6]	A	C	2.606e^-4	0.758	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14212351	X_14212351_INS [dm3] X_14318318_INS [dm6]	A	AA	2.614e^-4	0.758	INTERGENIC
2L	13674441	2L_13674441_SNP [dm3] 2L_13674441_SNP [dm6]	T	C	2.617e^-4	0.758	INTERGENIC
X	14232884	X_14232884_SNP [dm3] X_14338851_SNP [dm6]	C	T	2.621e^-4	0.758	INTRON dpr8
3L	11819321	3L_11819321_SNP [dm3] 3L_11826221_SNP [dm6]	C	T	2.622e^-4	0.758	UPSTREAM CG32095 DOWNSTREAM CycA INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3591759	3L_3591759_SNP [dm3] 3L_3591759_SNP [dm6]	T	G	2.629e^-4	0.758	INTRON Eip63E
3R	18256846	3R_18256846_SNP [dm3] 3R_22431124_SNP [dm6]	T	G	2.636e^-4	0.758	INTRON CG13847
3L	4037800	3L_4037800_SNP [dm3] 3L_4037800_SNP [dm6]	C	G	2.637e^-4	0.758	UTR_3_PRIME CG11593 DOWNSTREAM Gr64f
3R	21593494	3R_21593494_DEL [dm3] 3R_25767772_DEL [dm6]	AAA	A	2.638e^-4	0.758	INTERGENIC
3R	22631347	3R_22631347_SNP [dm3] 3R_26805625_SNP [dm6]	G	C	2.642e^-4	0.758	DOWNSTREAM snoRNA:Me28S-U1554 INTRON Tl
X	7782587	X_7782587_SNP [dm3] X_7888554_SNP [dm6]	T	C	2.643e^-4	0.758	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13047770	2R_13047770_SNP [dm3] 2R_17160265_SNP [dm6]	G	C	2.650e^-4	0.758	SYNONYMOUS_CODING CG30457
X	11341674	X_11341674_SNP [dm3] X_11447641_SNP [dm6]	C	T	2.656e^-4	0.758	INTRON Evi5	TF binding site mE1_TFBS_kn
2L	10777366	2L_10777366_INS [dm3] 2L_10777366_INS [dm6]	T	TGAGT	2.658e^-4	0.758	INTRON CG31869
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	2.662e^-4	0.758	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	2.663e^-4	0.758	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	2.663e^-4	0.758	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5192746	2R_5192746_SNP [dm3] 2R_9305241_SNP [dm6]	G	T	2.664e^-4	0.758	SYNONYMOUS_CODING Myd88	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	2.667e^-4	0.758	INTERGENIC
2L	22962805	2L_22962805_SNP [dm3] 2L_23070073_SNP [dm6]	C	T	2.674e^-4	0.758	EXON CR43242	TF binding site mE1_TFBS_cad
2L	4224640	2L_4224640_SNP [dm3] 2L_4224640_SNP [dm6]	G	A	2.674e^-4	0.758	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12388227	2R_12388227_SNP [dm3] 2R_16500722_SNP [dm6]	G	A	2.676e^-4	0.758	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12476861	2R_12476861_SNP [dm3] 2R_16589356_SNP [dm6]	C	T	2.679e^-4	0.758	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12106192	3L_12106192_SNP [dm3] 3L_12113092_SNP [dm6]	T	G	2.681e^-4	0.758	INTERGENIC
3L	7459671	3L_7459671_SNP [dm3] 3L_7466571_SNP [dm6]	T	G	2.682e^-4	0.758	SPLICE_SITE_REGION Tsp66A & 2 others UPSTREAM Tsp66A INTRON Tsp66A & 2 others
X	20459369	X_20459369_SNP [dm3] X_20588342_SNP [dm6]	A	G	2.686e^-4	0.758	INTERGENIC
3L	16977839	3L_16977839_SNP [dm3] 3L_16984739_SNP [dm6]	A	T	2.689e^-4	0.758	INTRON Exn
3L	11813425	3L_11813425_SNP [dm3] 3L_11820325_SNP [dm6]	G	C	2.689e^-4	0.758	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	22032352	2L_22032352_SNP [dm3] 2L_22032352_SNP [dm6]	G	A	2.698e^-4	0.758	UPSTREAM CR45335 INTERGENIC
3L	7745525	3L_7745525_SNP [dm3] 3L_7752425_SNP [dm6]	G	C	2.701e^-4	0.758	INTRON CG32373	TF binding site BDTNP1_TFBS_sna
2L	13935576	2L_13935576_SNP [dm3] 2L_13935576_SNP [dm6]	A	C	2.706e^-4	0.758	UPSTREAM CG16885 INTRON Ance-3
2R	17982608	2R_17982608_SNP [dm3] 2R_22095103_SNP [dm6]	T	C	2.709e^-4	0.758	INTRON CG11073
X	7782104	X_7782104_SNP [dm3] X_7888071_SNP [dm6]	T	C	2.718e^-4	0.758	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5153631	2L_5153631_SNP [dm3] 2L_5153631_SNP [dm6]	A	G	2.718e^-4	0.758	INTRON Msp300
3L	14095751	3L_14095751_SNP [dm3] 3L_14102651_SNP [dm6]	G	A	2.722e^-4	0.758	DOWNSTREAM Sox21a INTERGENIC
3L	3753697	3L_3753697_SNP [dm3] 3L_3753697_SNP [dm6]	G	C	2.722e^-4	0.758	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
2L	1999134	2L_1999134_SNP [dm3] 2L_1999134_SNP [dm6]	C	T	2.730e^-4	0.758	UPSTREAM CR43464 INTRON CG33543
2R	12859834	2R_12859834_SNP [dm3] 2R_16972329_SNP [dm6]	G	A	2.742e^-4	0.758	DOWNSTREAM CR44377 INTERGENIC
2L	14131742	2L_14131742_SNP [dm3] 2L_14131742_SNP [dm6]	A	G	2.744e^-4	0.758	INTERGENIC
2L	7479022	2L_7479022_SNP [dm3] 2L_7479022_SNP [dm6]	G	A	2.749e^-4	0.758	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14973580	2R_14973580_SNP [dm3] 2R_19086075_SNP [dm6]	C	T	2.752e^-4	0.758	INTRON 5-HT1A
2R	6973166	2R_6973166_SNP [dm3] 2R_11085661_SNP [dm6]	T	C	2.754e^-4	0.758	SYNONYMOUS_CODING CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19701032	2R_19701032_SNP [dm3] 2R_23813509_SNP [dm6]	C	T	2.756e^-4	0.758	INTRON CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
2L	7581795	2L_7581795_SNP [dm3] 2L_7581795_SNP [dm6]	A	G	2.756e^-4	0.758	UPSTREAM Spn28B INTERGENIC
2R	19242268	2R_19242268_SNP [dm3] 2R_23354745_SNP [dm6]	T	G	2.759e^-4	0.758	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8121282	3R_8121282_SNP [dm3] 3R_12295560_SNP [dm6]	C	T	2.760e^-4	0.758	UTR_3_PRIME svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	7853622	3L_7853622_SNP [dm3] 3L_7860522_SNP [dm6]	G	C	2.760e^-4	0.758	INTRON Pdp1
3L	21076589	3L_21076589_SNP [dm3] 3L_21083489_SNP [dm6]	G	C	2.769e^-4	0.758	INTRON ko
3R	22258496	3R_22258496_SNP [dm3] 3R_26432774_SNP [dm6]	T	C	2.772e^-4	0.758	INTERGENIC
3L	8589140	3L_8589140_SNP [dm3] 3L_8596040_SNP [dm6]	C	A	2.774e^-4	0.758	NON_SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
2L	380539	2L_380539_DEL [dm3] 2L_380539_DEL [dm6]	AT	A	2.779e^-4	0.758	INTRON al	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	22961782	3R_22961782_SNP [dm3] 3R_27136060_SNP [dm6]	G	A	2.786e^-4	0.758	INTRON CG6051
2L	15461665	2L_15461665_SNP [dm3] 2L_15461665_SNP [dm6]	A	G	2.787e^-4	0.758	INTERGENIC
X	14217247	X_14217247_SNP [dm3] X_14323214_SNP [dm6]	T	A	2.788e^-4	0.758	INTRON dpr8	TF binding site BDTNP1_TFBS_da
X	22232347	X_22232347_DEL [dm3] X_22830511_DEL [dm6]	GCTGCTG	G	2.788e^-4	0.758	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	8414794	3R_8414794_SNP [dm3] 3R_12589072_SNP [dm6]	C	T	2.795e^-4	0.758	INTRON Octbeta2R	transposable element FlyBase
3L	14169566	3L_14169566_SNP [dm3] 3L_14176466_SNP [dm6]	G	A	2.796e^-4	0.758	SYNONYMOUS_CODING D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	19225044	X_19225044_SNP [dm3] X_19331011_SNP [dm6]	A	T	2.797e^-4	0.758	INTRON nAChRalpha7
X	19225049	X_19225049_SNP [dm3] X_19331016_SNP [dm6]	A	T	2.797e^-4	0.758	INTRON nAChRalpha7
2L	7593437	2L_7593437_DEL [dm3] 2L_7593437_DEL [dm6]	CCACTCGC	C	2.797e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11491050	2L_11491050_SNP [dm3] 2L_11491050_SNP [dm6]	T	A	2.803e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6452905	2L_6452905_SNP [dm3] 2L_6452905_SNP [dm6]	A	C	2.805e^-4	0.758	SYNONYMOUS_CODING retm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4003478	3L_4003478_SNP [dm3] 3L_4003478_SNP [dm6]	T	G	2.805e^-4	0.758	START_GAINED CG14985 UTR_5_PRIME CG14985
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	2.815e^-4	0.758	INTRON grsm
3R	15487815	3R_15487815_SNP [dm3] 3R_19662093_SNP [dm6]	A	G	2.825e^-4	0.758	SYNONYMOUS_CODING ort
2L	1625979	2L_1625979_SNP [dm3] 2L_1625979_SNP [dm6]	G	C	2.827e^-4	0.758	EXON CR44603
3R	12506391	3R_12506391_SNP [dm3] 3R_16680669_SNP [dm6]	A	T	2.836e^-4	0.758	INTRON Ubx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	12701285	2L_12701285_SNP [dm3] 2L_12701285_SNP [dm6]	G	T	2.841e^-4	0.758	UTR_3_PRIME CG5776 UPSTREAM CG17036 DOWNSTREAM CG5776
2L	10574941	2L_10574941_SNP [dm3] 2L_10574941_SNP [dm6]	C	A	2.843e^-4	0.758	DOWNSTREAM w-cup INTRON Trim9
2L	10574942	2L_10574942_SNP [dm3] 2L_10574942_SNP [dm6]	C	A	2.843e^-4	0.758	DOWNSTREAM w-cup INTRON Trim9
2R	16644840	2R_16644840_SNP [dm3] 2R_20757335_SNP [dm6]	A	G	2.859e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4957319	2L_4957319_SNP [dm3] 2L_4957319_SNP [dm6]	C	G	2.865e^-4	0.758	SYNONYMOUS_CODING Marcal1
2L	12100625	2L_12100625_SNP [dm3] 2L_12100625_SNP [dm6]	A	G	2.868e^-4	0.758	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
2R	6577482	2R_6577482_SNP [dm3] 2R_10689977_SNP [dm6]	A	T	2.869e^-4	0.758	INTRON stan
2L	7394364	2L_7394364_SNP [dm3] 2L_7394364_SNP [dm6]	C	T	2.874e^-4	0.758	INTRON CG5160
3R	24165750	3R_24165750_SNP [dm3] 3R_28340028_SNP [dm6]	T	A	2.875e^-4	0.758	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10842484	3R_10842484_SNP [dm3] 3R_15016762_SNP [dm6]	G	A	2.883e^-4	0.758	DOWNSTREAM CG14861 INTERGENIC
2R	5028235	2R_5028235_SNP [dm3] 2R_9140730_SNP [dm6]	A	T	2.884e^-4	0.758	START_GAINED CG44286 UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2L	8370580	2L_8370580_SNP [dm3] 2L_8370580_SNP [dm6]	G	T	2.891e^-4	0.758	UTR_5_PRIME CG17292 DOWNSTREAM Pp2A-29B EXON CR45341
3L	19695944	3L_19695944_SNP [dm3] 3L_19702844_SNP [dm6]	A	G	2.892e^-4	0.758	INTRON serp
3L	11819340	3L_11819340_SNP [dm3] 3L_11826240_SNP [dm6]	G	A	2.903e^-4	0.758	UPSTREAM CG32095 DOWNSTREAM CycA INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7150924	2L_7150924_SNP [dm3] 2L_7150924_SNP [dm6]	C	T	2.910e^-4	0.758	INTRON Pvf3
3R	9956966	3R_9956966_SNP [dm3] 3R_14131244_SNP [dm6]	T	A	2.910e^-4	0.758	INTRON CG14356	TF binding site mE1_TFBS_cad
2R	13819222	2R_13819222_SNP [dm3] 2R_17931717_SNP [dm6]	A	T	2.912e^-4	0.758	INTERGENIC
3R	14140519	3R_14140519_SNP [dm3] 3R_18314797_SNP [dm6]	T	G	2.912e^-4	0.758	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	2.913e^-4	0.758	DOWNSTREAM PpN58A INTRON Fili
3L	13880697	3L_13880697_SNP [dm3] 3L_13887597_SNP [dm6]	G	C	2.916e^-4	0.758	INTRON dysc
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	2.919e^-4	0.758	UPSTREAM hoe1 INTRON hoe1
2R	2999165	2R_2999165_SNP [dm3] 2R_7111660_SNP [dm6]	C	G	2.922e^-4	0.758	INTRON esn	TF binding site mE1_TFBS_inv
2R	12647011	2R_12647011_SNP [dm3] 2R_16759506_SNP [dm6]	T	G	2.923e^-4	0.758	SPLICE_SITE_REGION unc-104 INTRON unc-104
2R	3345019	2R_3345019_SNP [dm3] 2R_7457514_SNP [dm6]	T	G	2.926e^-4	0.758	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11491110	2L_11491110_SNP [dm3] 2L_11491110_SNP [dm6]	T	C	2.928e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9971140	3R_9971140_SNP [dm3] 3R_14145418_SNP [dm6]	G	T	2.928e^-4	0.758	INTERGENIC
3R	26728074	3R_26728074_SNP [dm3] 3R_30902352_SNP [dm6]	A	G	2.928e^-4	0.758	UPSTREAM CG33483 INTERGENIC
3L	13823667	3L_13823667_SNP [dm3] 3L_13830567_SNP [dm6]	C	A	2.933e^-4	0.758	INTERGENIC
2L	13031124	2L_13031124_SNP [dm3] 2L_13031124_SNP [dm6]	C	T	2.934e^-4	0.758	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	20408114	3L_20408114_SNP [dm3] 3L_20415014_SNP [dm6]	G	A	2.938e^-4	0.758	INTRON zye	TF binding site mE1_TFBS_HSA
3R	17633012	3R_17633012_SNP [dm3] 3R_21807290_SNP [dm6]	T	C	2.939e^-4	0.758	INTRON CASK
2R	18507798	2R_18507798_SNP [dm3] 2R_22620293_SNP [dm6]	G	A	2.940e^-4	0.758	UTR_5_PRIME CG33143
3L	7853420	3L_7853420_SNP [dm3] 3L_7860320_SNP [dm6]	C	G	2.944e^-4	0.758	INTRON Pdp1
2L	10909064	2L_10909064_SNP [dm3] 2L_10909064_SNP [dm6]	A	G	2.945e^-4	0.758	UPSTREAM CG7309 DOWNSTREAM CG14069 INTERGENIC
X	21162186	X_21162186_SNP [dm3] X_21291159_SNP [dm6]	A	G	2.947e^-4	0.758	SYNONYMOUS_CODING CG1494
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	2.950e^-4	0.758	INTRON grsm
X	11341667	X_11341667_SNP [dm3] X_11447634_SNP [dm6]	A	T	2.951e^-4	0.758	INTRON Evi5	TF binding site mE1_TFBS_kn
2R	11887570	2R_11887570_SNP [dm3] 2R_16000065_SNP [dm6]	T	A	2.972e^-4	0.758	INTRON ATPCL
X	7782113	X_7782113_SNP [dm3] X_7888080_SNP [dm6]	A	G	2.975e^-4	0.758	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23161231	3R_23161231_SNP [dm3] 3R_27335509_SNP [dm6]	C	G	2.980e^-4	0.758	INTERGENIC
3L	11118424	3L_11118424_SNP [dm3] 3L_11125324_SNP [dm6]	A	T	2.981e^-4	0.758	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	11118449	3L_11118449_INS [dm3] 3L_11125349_INS [dm6]	A	AAACTTATTCTA...	2.982e^-4	0.758	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	3824147	2L_3824147_SNP [dm3] 2L_3824147_SNP [dm6]	C	T	2.982e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10623812	2R_10623812_SNP [dm3] 2R_14736307_SNP [dm6]	A	G	2.991e^-4	0.758	INTERGENIC
2R	13119367	2R_13119367_INS [dm3] 2R_17231862_INS [dm6]	G	GA	2.997e^-4	0.758	INTRON mbl
2R	3305395	2R_3305395_SNP [dm3] 2R_7417890_SNP [dm6]	C	T	3.003e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2659329	3L_2659329_SNP [dm3] 3L_2659329_SNP [dm6]	T	C	3.007e^-4	0.758	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8371920	2L_8371920_SNP [dm3] 2L_8371920_SNP [dm6]	T	A	3.021e^-4	0.758	UPSTREAM CG17292 INTRON CG17292
2R	14513648	2R_14513648_SNP [dm3] 2R_18626143_SNP [dm6]	A	G	3.022e^-4	0.758	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
2R	13119431	2R_13119431_SNP [dm3] 2R_17231926_SNP [dm6]	A	G	3.022e^-4	0.758	INTRON mbl
3R	8116880	3R_8116880_SNP [dm3] 3R_12291158_SNP [dm6]	G	C	3.024e^-4	0.758	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11902808	3R_11902808_SNP [dm3] 3R_16077086_SNP [dm6]	C	T	3.030e^-4	0.758	UPSTREAM Mhcl INTRON Mhcl
2R	13270267	2R_13270267_SNP [dm3] 2R_17382762_SNP [dm6]	T	G	3.035e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11391993	3L_11391993_SNP [dm3] 3L_11398893_SNP [dm6]	T	A	3.036e^-4	0.758	INTERGENIC
3R	15487845	3R_15487845_SNP [dm3] 3R_19662123_SNP [dm6]	C	T	3.037e^-4	0.758	SYNONYMOUS_CODING ort
2L	7579723	2L_7579723_SNP [dm3] 2L_7579723_SNP [dm6]	C	T	3.041e^-4	0.758	UPSTREAM RapGAP1 INTERGENIC
2R	14865854	2R_14865854_SNP [dm3] 2R_18978349_SNP [dm6]	G	C	3.041e^-4	0.758	SYNONYMOUS_CODING CG18605	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6165892	X_6165892_SNP [dm3] X_6271859_SNP [dm6]	T	C	3.052e^-4	0.758	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7394617	2L_7394617_SNP [dm3] 2L_7394617_SNP [dm6]	T	A	3.055e^-4	0.758	INTRON CG5160
2R	6936505	2R_6936505_SNP [dm3] 2R_11049000_SNP [dm6]	A	G	3.055e^-4	0.758	INTRON luna
2R	4912600	2R_4912600_SNP [dm3] 2R_9025095_SNP [dm6]	A	C	3.056e^-4	0.758	INTRON CG8170	TF binding site mE1_TFBS_HSA
2L	2126535	2L_2126535_SNP [dm3] 2L_2126535_SNP [dm6]	T	A	3.061e^-4	0.758	DOWNSTREAM CG4259 INTERGENIC
3R	25645397	3R_25645397_SNP [dm3] 3R_29819675_SNP [dm6]	T	C	3.067e^-4	0.758	INTRON neo	TF binding site mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Trl
3L	10473177	3L_10473177_SNP [dm3] 3L_10480077_SNP [dm6]	G	A	3.071e^-4	0.758	INTERGENIC
3L	11118485	3L_11118485_SNP [dm3] 3L_11125385_SNP [dm6]	G	A	3.073e^-4	0.758	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	10619106	3L_10619106_DEL [dm3] 3L_10626006_DEL [dm6]	AA	A	3.084e^-4	0.758	UPSTREAM CG34238 & 1 other INTERGENIC
2L	11015561	2L_11015561_SNP [dm3] 2L_11015561_SNP [dm6]	C	G	3.084e^-4	0.758	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7579902	2L_7579902_SNP [dm3] 2L_7579902_SNP [dm6]	G	A	3.086e^-4	0.758	UPSTREAM RapGAP1 INTERGENIC
2R	14226361	2R_14226361_SNP [dm3] 2R_18338856_SNP [dm6]	G	C	3.090e^-4	0.758	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco
3L	9485228	3L_9485228_INS [dm3] 3L_9492128_INS [dm6]	T	TGT	3.092e^-4	0.758	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	3.093e^-4	0.758	UPSTREAM CR45374 INTERGENIC
2R	13119375	2R_13119375_DEL [dm3] 2R_17231870_DEL [dm6]	GT	G	3.098e^-4	0.758	INTRON mbl
X	4549898	X_4549898_SNP [dm3] X_4655865_SNP [dm6]	C	T	3.102e^-4	0.758	INTRON Cbp80
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	3.112e^-4	0.758	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15487975	3R_15487975_SNP [dm3] 3R_19662253_SNP [dm6]	A	C	3.115e^-4	0.758	INTRON ort
2R	19502410	2R_19502410_SNP [dm3] 2R_23614887_SNP [dm6]	T	A	3.116e^-4	0.758	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	3.118e^-4	0.758	INTRON grsm
2R	9148478	2R_9148478_SNP [dm3] 2R_13260973_SNP [dm6]	G	T	3.130e^-4	0.758	INTRON CG42319
3L	10295616	3L_10295616_SNP [dm3] 3L_10302516_SNP [dm6]	C	A	3.130e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14674837	2L_14674837_SNP [dm3] 2L_14674837_SNP [dm6]	G	A	3.138e^-4	0.758	INTRON osp
2L	11860150	2L_11860150_SNP [dm3] 2L_11860150_SNP [dm6]	G	T	3.144e^-4	0.758	INTRON Pde1c
3R	19206458	3R_19206458_INS [dm3] 3R_23380736_INS [dm6]	C	CCATGAC	3.149e^-4	0.758	CODON_INSERTION CG4393	TF binding site mE1_TFBS_chinmo
3L	9985160	3L_9985160_SNP [dm3] 3L_9992060_SNP [dm6]	C	T	3.152e^-4	0.758	INTRON dpr6
X	5434129	X_5434129_SNP [dm3] X_5540096_SNP [dm6]	A	C	3.154e^-4	0.758	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12646965	2R_12646965_SNP [dm3] 2R_16759460_SNP [dm6]	C	G	3.159e^-4	0.758	INTRON unc-104
2L	4903477	2L_4903477_SNP [dm3] 2L_4903477_SNP [dm6]	C	T	3.161e^-4	0.758	UTR_3_PRIME CG3036 DOWNSTREAM CG2837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10351202	3R_10351202_SNP [dm3] 3R_14525480_SNP [dm6]	A	G	3.164e^-4	0.758	SPLICE_SITE_REGION Pde6 INTRON Pde6
2R	18047621	2R_18047621_SNP [dm3] 2R_22160116_SNP [dm6]	G	T	3.168e^-4	0.758	INTRON a	TF binding site mE1_TFBS_chinmo
2R	6590012	2R_6590012_SNP [dm3] 2R_10702507_SNP [dm6]	G	A	3.170e^-4	0.758	INTRON stan
X	14221135	X_14221135_SNP [dm3] X_14327102_SNP [dm6]	A	T	3.172e^-4	0.758	INTRON dpr8	TF binding site mE1_TFBS_inv
2L	11494752	2L_11494752_SNP [dm3] 2L_11494752_SNP [dm6]	C	A	3.177e^-4	0.758	INTERGENIC
3R	7686856	3R_7686856_SNP [dm3] 3R_11861134_SNP [dm6]	G	C	3.181e^-4	0.758	INTRON CG6959
X	21162080	X_21162080_DEL [dm3] X_21291053_DEL [dm6]	ATTGCTTCC	A	3.192e^-4	0.758	INTRON CG1494
X	7782509	X_7782509_SNP [dm3] X_7888476_SNP [dm6]	C	T	3.194e^-4	0.758	SYNONYMOUS_CODING CG10932 DOWNSTREAM Nek2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11391994	3L_11391994_SNP [dm3] 3L_11398894_SNP [dm6]	G	C	3.196e^-4	0.758	INTERGENIC
X	11341672	X_11341672_SNP [dm3] X_11447639_SNP [dm6]	T	C	3.200e^-4	0.758	INTRON Evi5	TF binding site mE1_TFBS_kn
3R	8414796	3R_8414796_SNP [dm3] 3R_12589074_SNP [dm6]	G	A	3.201e^-4	0.758	INTRON Octbeta2R	transposable element FlyBase
2L	13105649	2L_13105649_SNP [dm3] 2L_13105649_SNP [dm6]	T	G	3.207e^-4	0.758	DOWNSTREAM CR45461 INTERGENIC
X	7783508	X_7783508_SNP [dm3] X_7889475_SNP [dm6]	T	C	3.209e^-4	0.758	SYNONYMOUS_CODING Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11952910	3R_11952910_SNP [dm3] 3R_16127188_SNP [dm6]	A	C	3.209e^-4	0.758	INTRON Sb
2R	19170167	2R_19170167_SNP [dm3] 2R_23282644_SNP [dm6]	A	C	3.212e^-4	0.758	DOWNSTREAM CG3124 INTERGENIC
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	3.215e^-4	0.758	INTRON CG11319
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	3.221e^-4	0.758	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2L	1449433	2L_1449433_SNP [dm3] 2L_1449433_SNP [dm6]	C	T	3.236e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4390050	2L_4390050_SNP [dm3] 2L_4390050_SNP [dm6]	A	T	3.238e^-4	0.758	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7781717	X_7781717_SNP [dm3] X_7887684_SNP [dm6]	G	A	3.244e^-4	0.758	SYNONYMOUS_CODING CG10932 DOWNSTREAM Ir7g	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	4302421	X_4302421_DEL [dm3] X_4408388_DEL [dm6]	CC	C	3.247e^-4	0.758	INTRON CR32773	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	14226550	X_14226550_SNP [dm3] X_14332517_SNP [dm6]	A	G	3.247e^-4	0.758	INTRON dpr8	TF binding site mE1_TFBS_chinmo
3R	25397140	3R_25397140_SNP [dm3] 3R_29571418_SNP [dm6]	A	G	3.249e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6586082	2R_6586082_SNP [dm3] 2R_10698577_SNP [dm6]	C	T	3.258e^-4	0.758	INTRON stan
2L	7579184	2L_7579184_SNP [dm3] 2L_7579184_SNP [dm6]	C	T	3.260e^-4	0.758	UPSTREAM RapGAP1 INTERGENIC
2L	1029354	2L_1029354_SNP [dm3] 2L_1029354_SNP [dm6]	C	G	3.262e^-4	0.758	INTRON IA-2
2L	7581625	2L_7581625_SNP [dm3] 2L_7581625_SNP [dm6]	G	A	3.279e^-4	0.758	UPSTREAM Spn28B INTERGENIC
2R	9956630	2R_9956630_SNP [dm3] 2R_14069125_SNP [dm6]	G	C	3.279e^-4	0.758	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17119916	2R_17119916_SNP [dm3] 2R_21232411_SNP [dm6]	C	T	3.281e^-4	0.758	INTRON ASPP
2L	8371557	2L_8371557_SNP [dm3] 2L_8371557_SNP [dm6]	T	A	3.283e^-4	0.758	UPSTREAM CR45341 & 1 other INTRON CG17292
2R	3792583	2R_3792583_DEL [dm3] 2R_7905078_DEL [dm6]	TT	T	3.283e^-4	0.758	INTRON CG30377
X	14222817	X_14222817_SNP [dm3] X_14328784_SNP [dm6]	G	A	3.284e^-4	0.758	INTRON dpr8
2R	17086073	2R_17086073_SNP [dm3] 2R_21198568_SNP [dm6]	G	T	3.285e^-4	0.758	SYNONYMOUS_CODING Lapsyn
2L	7155313	2L_7155313_INS [dm3] 2L_7155313_INS [dm6]	T	TAT	3.288e^-4	0.758	INTRON Pvf3	TF binding site mE1_TFBS_sens
2R	12116066	2R_12116066_SNP [dm3] 2R_16228561_SNP [dm6]	C	G	3.310e^-4	0.763	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15481704	3R_15481704_SNP [dm3] 3R_19655982_SNP [dm6]	A	G	3.321e^-4	0.764	INTRON CG6184	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9896969	2R_9896969_SNP [dm3] 2R_14009464_SNP [dm6]	C	T	3.327e^-4	0.765	UTR_5_PRIME mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	3.332e^-4	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	9989057	3L_9989057_SNP [dm3] 3L_9995957_SNP [dm6]	C	T	3.335e^-4	0.765	INTRON dpr6
2R	18568858	2R_18568858_SNP [dm3] 2R_22681353_SNP [dm6]	C	T	3.341e^-4	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	15543793	2R_15543793_INS [dm3] 2R_19656288_INS [dm6]	T	TT	3.349e^-4	0.765	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21724864	3R_21724864_SNP [dm3] 3R_25899142_SNP [dm6]	A	G	3.357e^-4	0.765	SYNONYMOUS_CODING MCO3 UPSTREAM CG31091	TF binding site mE1_TFBS_sens
2L	9385641	2L_9385641_SNP [dm3] 2L_9385641_SNP [dm6]	G	T	3.366e^-4	0.765	INTRON Shawl
2R	5025099	2R_5025099_SNP [dm3] 2R_9137594_SNP [dm6]	G	T	3.367e^-4	0.765	SYNONYMOUS_CODING alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	14217208	X_14217208_SNP [dm3] X_14323175_SNP [dm6]	G	C	3.371e^-4	0.765	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2L	21643729	2L_21643729_SNP [dm3] 2L_21643729_SNP [dm6]	G	A	3.374e^-4	0.765	INTRON Ac3
2R	18332697	2R_18332697_SNP [dm3] 2R_22445192_SNP [dm6]	C	T	3.378e^-4	0.765	INTERGENIC
2L	13819846	2L_13819846_SNP [dm3] 2L_13819846_SNP [dm6]	A	G	3.380e^-4	0.765	DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10697704	3R_10697704_SNP [dm3] 3R_14871982_SNP [dm6]	T	A	3.382e^-4	0.765	INTRON btsz
2L	11160628	2L_11160628_SNP [dm3] 2L_11160628_SNP [dm6]	A	G	3.386e^-4	0.765	INTRON Ca-beta
2R	6915014	2R_6915014_SNP [dm3] 2R_11027509_SNP [dm6]	C	A	3.386e^-4	0.765	INTRON luna
2L	14674851	2L_14674851_SNP [dm3] 2L_14674851_SNP [dm6]	A	G	3.390e^-4	0.765	INTRON osp
3L	3659035	3L_3659035_SNP [dm3] 3L_3659035_SNP [dm6]	C	A	3.403e^-4	0.767	UPSTREAM CG43098 INTERGENIC
3R	8134980	3R_8134980_SNP [dm3] 3R_12309258_SNP [dm6]	T	G	3.408e^-4	0.767	INTERGENIC
3R	19675244	3R_19675244_SNP [dm3] 3R_23849522_SNP [dm6]	T	A	3.409e^-4	0.767	UTR_3_PRIME CG34355
2L	4390054	2L_4390054_SNP [dm3] 2L_4390054_SNP [dm6]	T	G	3.416e^-4	0.767	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2635719	2L_2635719_SNP [dm3] 2L_2635719_SNP [dm6]	G	A	3.417e^-4	0.767	INTERGENIC
X	14217222	X_14217222_SNP [dm3] X_14323189_SNP [dm6]	G	T	3.431e^-4	0.769	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2R	3348420	2R_3348420_SNP [dm3] 2R_7460915_SNP [dm6]	A	T	3.435e^-4	0.769	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	4951122	3R_4951122_SNP [dm3] 3R_9125400_SNP [dm6]	G	A	3.452e^-4	0.769	INTRON pum
2R	3305407	2R_3305407_SNP [dm3] 2R_7417902_SNP [dm6]	T	A	3.452e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	6575773	X_6575773_SNP [dm3] X_6681740_SNP [dm6]	T	C	3.453e^-4	0.769	UTR_3_PRIME l_1_G0255 UPSTREAM CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7409605	3L_7409605_SNP [dm3] 3L_7416505_SNP [dm6]	T	C	3.473e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13932250	2R_13932250_SNP [dm3] 2R_18044745_SNP [dm6]	A	G	3.484e^-4	0.769	SYNONYMOUS_CODING CG5770
X	17052590	X_17052590_SNP [dm3] X_17158557_SNP [dm6]	G	C	3.492e^-4	0.769	SYNONYMOUS_CODING xmas-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7600602	2L_7600602_SNP [dm3] 2L_7600602_SNP [dm6]	A	G	3.492e^-4	0.769	INTERGENIC
3R	18983835	3R_18983835_SNP [dm3] 3R_23158113_SNP [dm6]	A	T	3.499e^-4	0.769	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	3348368	2R_3348368_SNP [dm3] 2R_7460863_SNP [dm6]	A	T	3.507e^-4	0.769	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	20718349	3R_20718349_SNP [dm3] 3R_24892627_SNP [dm6]	G	A	3.509e^-4	0.769	UPSTREAM CG31121 INTRON CG31121
3R	9956962	3R_9956962_SNP [dm3] 3R_14131240_SNP [dm6]	T	A	3.509e^-4	0.769	INTRON CG14356	TF binding site mE1_TFBS_cad
3R	21593488	3R_21593488_SNP [dm3] 3R_25767766_SNP [dm6]	C	A	3.513e^-4	0.769	INTERGENIC
2R	3607121	2R_3607121_SNP [dm3] 2R_7719616_SNP [dm6]	A	G	3.513e^-4	0.769	INTRON CG18812
2L	9625356	2L_9625356_SNP [dm3] 2L_9625356_SNP [dm6]	C	A	3.523e^-4	0.769	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18423724	3R_18423724_SNP [dm3] 3R_22598002_SNP [dm6]	A	C	3.523e^-4	0.769	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25021760	3R_25021760_SNP [dm3] 3R_29196038_SNP [dm6]	G	T	3.523e^-4	0.769	INTERGENIC
X	10535585	X_10535585_SNP [dm3] X_10641552_SNP [dm6]	T	C	3.523e^-4	0.769	INTRON X11Lbeta
3L	6659365	3L_6659365_SNP [dm3] 3L_6666265_SNP [dm6]	A	T	3.524e^-4	0.769	UPSTREAM eIF4E-4 DOWNSTREAM CG32395 EXON CR45173
3R	8121332	3R_8121332_SNP [dm3] 3R_12295610_SNP [dm6]	C	A	3.525e^-4	0.769	UTR_3_PRIME svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	1563013	2R_1563013_SNP [dm3] 2R_5675508_SNP [dm6]	C	A	3.526e^-4	0.769	INTERGENIC
3R	6622250	3R_6622250_SNP [dm3] 3R_10796528_SNP [dm6]	T	A	3.535e^-4	0.769	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_sens
3R	19735272	3R_19735272_SNP [dm3] 3R_23909550_SNP [dm6]	A	T	3.538e^-4	0.769	INTRON sba
2L	21902192	2L_21902192_SNP [dm3] 2L_21902192_SNP [dm6]	A	C	3.539e^-4	0.769	UPSTREAM CG1421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12521930	2L_12521930_SNP [dm3] 2L_12521930_SNP [dm6]	A	T	3.551e^-4	0.769	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15309002	3R_15309002_SNP [dm3] 3R_19483280_SNP [dm6]	T	C	3.551e^-4	0.769	INTRON Dys	TF binding site mE1_TFBS_inv
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	3.562e^-4	0.769	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
2L	2605261	2L_2605261_SNP [dm3] 2L_2605261_SNP [dm6]	G	T	3.566e^-4	0.769	INTERGENIC
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	3.567e^-4	0.769	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
2L	9621787	2L_9621787_SNP [dm3] 2L_9621787_SNP [dm6]	G	A	3.568e^-4	0.769	INTRON GlcAT-S
2R	13050909	2R_13050909_SNP [dm3] 2R_17163404_SNP [dm6]	A	G	3.579e^-4	0.769	INTERGENIC
2R	13512436	2R_13512436_SNP [dm3] 2R_17624931_SNP [dm6]	C	T	3.589e^-4	0.769	INTRON CG10936
X	11042256	X_11042256_SNP [dm3] X_11148223_SNP [dm6]	C	A	3.590e^-4	0.769	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18163969	2R_18163969_SNP [dm3] 2R_22276464_SNP [dm6]	T	G	3.590e^-4	0.769	INTRON dve
2L	10692368	2L_10692368_DEL [dm3] 2L_10692368_DEL [dm6]	GA	G	3.591e^-4	0.769	DOWNSTREAM CG17108 INTERGENIC
3L	7251195	3L_7251195_SNP [dm3] 3L_7258095_SNP [dm6]	T	C	3.591e^-4	0.769	INTRON CG14830
X	20564140	X_20564140_SNP [dm3] X_20693113_SNP [dm6]	A	G	3.592e^-4	0.769	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	12649118	2L_12649118_SNP [dm3] 2L_12649118_SNP [dm6]	T	C	3.595e^-4	0.769	INTERGENIC
X	15888453	X_15888453_SNP [dm3] X_15994420_SNP [dm6]	C	T	3.602e^-4	0.769	SYNONYMOUS_CODING exd
2R	17990646	2R_17990646_SNP [dm3] 2R_22103141_SNP [dm6]	T	C	3.603e^-4	0.769	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7174960	2L_7174960_SNP [dm3] 2L_7174960_SNP [dm6]	G	T	3.613e^-4	0.769	UPSTREAM CR44610 INTERGENIC
2L	13252612	2L_13252612_SNP [dm3] 2L_13252612_SNP [dm6]	G	A	3.617e^-4	0.769	INTRON CG31728
3R	20604927	3R_20604927_SNP [dm3] 3R_24779205_SNP [dm6]	C	T	3.618e^-4	0.769	UPSTREAM CG42331 INTRON CG42331
X	21850002	X_21850002_SNP [dm3] X_22448166_SNP [dm6]	G	T	3.626e^-4	0.769	DOWNSTREAM CG14621 INTRON CG14615
2L	1137682	2L_1137682_SNP [dm3] 2L_1137682_SNP [dm6]	C	T	3.628e^-4	0.769	INTRON CG4577
3L	12887791	3L_12887791_SNP [dm3] 3L_12894691_SNP [dm6]	C	G	3.630e^-4	0.769	UTR_3_PRIME CG14118	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16783860	X_16783860_SNP [dm3] X_16889827_SNP [dm6]	G	A	3.638e^-4	0.769	SYNONYMOUS_CODING CG13002 UPSTREAM CR43768
3L	20403318	3L_20403318_SNP [dm3] 3L_20410218_SNP [dm6]	T	G	3.642e^-4	0.769	INTRON CG13248
2R	17935791	2R_17935791_SNP [dm3] 2R_22048286_SNP [dm6]	A	G	3.647e^-4	0.769	INTERGENIC
3L	7224421	3L_7224421_DEL [dm3] 3L_7231321_DEL [dm6]	CCA	C	3.656e^-4	0.769	INTERGENIC
3L	13365695	3L_13365695_SNP [dm3] 3L_13372595_SNP [dm6]	A	T	3.663e^-4	0.769	INTERGENIC
3L	890659	3L_890659_SNP [dm3] 3L_890659_SNP [dm6]	T	C	3.669e^-4	0.769	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad
3L	8571240	3L_8571240_SNP [dm3] 3L_8578140_SNP [dm6]	G	T	3.670e^-4	0.769	UTR_5_PRIME CG43078 UPSTREAM CG43078
2L	2574828	2L_2574828_SNP [dm3] 2L_2574828_SNP [dm6]	A	T	3.673e^-4	0.769	DOWNSTREAM insv INTRON Rad1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21161878	X_21161878_DEL [dm3] X_21290851_DEL [dm6]	TTT	CA	3.678e^-4	0.769	INTRON CG1494	transposable element FlyBase
2R	17992330	2R_17992330_SNP [dm3] 2R_22104825_SNP [dm6]	A	G	3.679e^-4	0.769	SPLICE_SITE_REGION CG6613 INTRON CG6613
2L	1534689	2L_1534689_SNP [dm3] 2L_1534689_SNP [dm6]	A	C	3.684e^-4	0.769	INTERGENIC
X	8862781	X_8862781_SNP [dm3] X_8968748_SNP [dm6]	C	A	3.687e^-4	0.769	INTRON rdgA
2L	1791882	2L_1791882_SNP [dm3] 2L_1791882_SNP [dm6]	A	T	3.688e^-4	0.769	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
2L	4472271	2L_4472271_SNP [dm3] 2L_4472271_SNP [dm6]	C	T	3.698e^-4	0.769	INTRON ine
X	8839990	X_8839990_SNP [dm3] X_8945957_SNP [dm6]	C	T	3.700e^-4	0.769	INTRON rdgA
3R	8782225	3R_8782225_SNP [dm3] 3R_12956503_SNP [dm6]	A	G	3.702e^-4	0.769	INTRON grsm
X	18419106	X_18419106_SNP [dm3] X_18525073_SNP [dm6]	C	T	3.704e^-4	0.769	INTRON Bx
3L	11813292	3L_11813292_SNP [dm3] 3L_11820192_SNP [dm6]	T	C	3.705e^-4	0.769	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	22346051	3R_22346051_SNP [dm3] 3R_26520329_SNP [dm6]	T	C	3.715e^-4	0.769	INTRON plum EXON CR45226
3R	19446316	3R_19446316_INS [dm3] 3R_23620594_INS [dm6]	G	GG	3.716e^-4	0.769	INTRON CG31145
3L	7474879	3L_7474879_SNP [dm3] 3L_7481779_SNP [dm6]	C	T	3.716e^-4	0.769	INTERGENIC
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	3.725e^-4	0.769	SYNONYMOUS_CODING msps
2R	13047558	2R_13047558_SNP [dm3] 2R_17160053_SNP [dm6]	G	A	3.728e^-4	0.769	DOWNSTREAM CG30457 INTERGENIC
X	11041767	X_11041767_SNP [dm3] X_11147734_SNP [dm6]	C	T	3.732e^-4	0.769	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7068808	2R_7068808_SNP [dm3] 2R_11181303_SNP [dm6]	A	T	3.733e^-4	0.769	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11491065	2L_11491065_SNP [dm3] 2L_11491065_SNP [dm6]	A	T	3.739e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4132909	2L_4132909_SNP [dm3] 2L_4132909_SNP [dm6]	A	C	3.742e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1999139	2L_1999139_SNP [dm3] 2L_1999139_SNP [dm6]	C	G	3.743e^-4	0.769	UPSTREAM CR43464 INTRON CG33543
3R	19675249	3R_19675249_SNP [dm3] 3R_23849527_SNP [dm6]	A	C	3.744e^-4	0.769	UTR_3_PRIME CG34355
2R	3305403	2R_3305403_SNP [dm3] 2R_7417898_SNP [dm6]	T	G	3.747e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12382070	3L_12382070_SNP [dm3] 3L_12388970_SNP [dm6]	C	T	3.748e^-4	0.769	UPSTREAM Ncc69 INTRON Ncc69
3R	15488004	3R_15488004_DEL [dm3] 3R_19662282_DEL [dm6]	TT	T	3.752e^-4	0.769	SPLICE_SITE_REGION ort INTRON ort
3L	4649997	3L_4649997_SNP [dm3] 3L_4649997_SNP [dm6]	T	C	3.762e^-4	0.77	SYNONYMOUS_CODING CG32238 INTRON axo
X	1344309	X_1344309_SNP [dm3] X_1450276_SNP [dm6]	G	A	3.778e^-4	0.772	UTR_3_PRIME futsch
3R	20604947	3R_20604947_SNP [dm3] 3R_24779225_SNP [dm6]	A	T	3.779e^-4	0.772	UPSTREAM CG42331 INTRON CG42331
3R	15487806	3R_15487806_SNP [dm3] 3R_19662084_SNP [dm6]	C	T	3.790e^-4	0.774	SYNONYMOUS_CODING ort
3R	8118036	3R_8118036_SNP [dm3] 3R_12292314_SNP [dm6]	C	A	3.799e^-4	0.775	INTRON svp
2L	11493731	2L_11493731_SNP [dm3] 2L_11493731_SNP [dm6]	C	T	3.811e^-4	0.776	INTERGENIC
2R	17086370	2R_17086370_SNP [dm3] 2R_21198865_SNP [dm6]	C	T	3.813e^-4	0.776	SYNONYMOUS_CODING Lapsyn
2R	6936513	2R_6936513_SNP [dm3] 2R_11049008_SNP [dm6]	C	A	3.830e^-4	0.778	INTRON luna
3R	18983828	3R_18983828_SNP [dm3] 3R_23158106_SNP [dm6]	A	G	3.833e^-4	0.778	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	21711078	2L_21711078_SNP [dm3] 2L_21711078_SNP [dm6]	T	C	3.847e^-4	0.779	SPLICE_SITE_REGION CG31619 INTRON CG31619	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9988508	3L_9988508_SNP [dm3] 3L_9995408_SNP [dm6]	A	G	3.849e^-4	0.779	INTRON dpr6
2L	4908153	2L_4908153_SNP [dm3] 2L_4908153_SNP [dm6]	T	A	3.849e^-4	0.779	DOWNSTREAM hoe1 INTERGENIC
2R	17770585	2R_17770585_SNP [dm3] 2R_21883080_SNP [dm6]	C	A	3.859e^-4	0.78	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	846604	2L_846604_SNP [dm3] 2L_846604_SNP [dm6]	G	A	3.869e^-4	0.78	INTRON drongo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14883782	2R_14883782_DEL [dm3] 2R_18996277_DEL [dm6]	CCC	C	3.870e^-4	0.78	INTRON tn
3R	19694334	3R_19694334_SNP [dm3] 3R_23868612_SNP [dm6]	G	C	3.878e^-4	0.78	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10295993	3L_10295993_SNP [dm3] 3L_10302893_SNP [dm6]	G	A	3.881e^-4	0.78	INTERGENIC
2R	17992324	2R_17992324_SNP [dm3] 2R_22104819_SNP [dm6]	T	C	3.886e^-4	0.78	INTRON CG6613
X	7358854	X_7358854_SNP [dm3] X_7464821_SNP [dm6]	C	T	3.890e^-4	0.78	INTERGENIC
2L	7388450	2L_7388450_INS [dm3] 2L_7388450_INS [dm6]	A	ATA	3.892e^-4	0.78	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4666084	3R_4666084_SNP [dm3] 3R_8840362_SNP [dm6]	G	A	3.898e^-4	0.78	SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15100132	2L_15100132_SNP [dm3] 2L_15100132_SNP [dm6]	G	A	3.907e^-4	0.78	INTERGENIC
2L	10733013	2L_10733013_SNP [dm3] 2L_10733013_SNP [dm6]	G	T	3.911e^-4	0.78	NON_SYNONYMOUS_CODING Dpy-30L1 UPSTREAM CG6750 DOWNSTREAM Nup107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	11493716	2L_11493716_SNP [dm3] 2L_11493716_SNP [dm6]	C	T	3.913e^-4	0.78	INTERGENIC
2L	8224915	2L_8224915_SNP [dm3] 2L_8224915_SNP [dm6]	G	A	3.916e^-4	0.78	SYNONYMOUS_CODING Pvr
X	15181225	X_15181225_SNP [dm3] X_15287192_SNP [dm6]	C	A	3.916e^-4	0.78	INTERGENIC
X	5447236	X_5447236_SNP [dm3] X_5553203_SNP [dm6]	A	G	3.917e^-4	0.78	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3R	6574413	3R_6574413_SNP [dm3] 3R_10748691_SNP [dm6]	G	C	3.929e^-4	0.781	INTRON TkR86C
3R	14112769	3R_14112769_DEL [dm3] 3R_18287047_DEL [dm6]	AT	G	3.931e^-4	0.781	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10040100	3L_10040100_SNP [dm3] 3L_10047000_SNP [dm6]	C	T	3.944e^-4	0.781	INTRON dpr6
3L	6924024	3L_6924024_SNP [dm3] 3L_6930924_SNP [dm6]	C	T	3.949e^-4	0.781	DOWNSTREAM CG45413 INTERGENIC
3R	18981909	3R_18981909_SNP [dm3] 3R_23156187_SNP [dm6]	A	G	3.951e^-4	0.781	SYNONYMOUS_CODING unk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	7081082	3R_7081082_SNP [dm3] 3R_11255360_SNP [dm6]	A	C	3.955e^-4	0.781	INTRON CR43283	TF binding site mE1_TFBS_Trl
2L	655885	2L_655885_SNP [dm3] 2L_655885_SNP [dm6]	G	T	3.955e^-4	0.781	INTRON ds
2L	8371698	2L_8371698_SNP [dm3] 2L_8371698_SNP [dm6]	T	C	3.958e^-4	0.781	UPSTREAM CG17292 INTRON CG17292
2R	1318622	2R_1318622_SNP [dm3] 2R_5431117_SNP [dm6]	C	T	3.960e^-4	0.781	INTRON laccase2	transposable element FlyBase
2R	11417678	2R_11417678_SNP [dm3] 2R_15530173_SNP [dm6]	T	G	3.962e^-4	0.781	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7201759	2L_7201759_INS [dm3] 2L_7201759_INS [dm6]	T	TT	3.966e^-4	0.781	INTRON CG4502
2L	846608	2L_846608_SNP [dm3] 2L_846608_SNP [dm6]	T	C	3.983e^-4	0.782	INTRON drongo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15487803	3R_15487803_SNP [dm3] 3R_19662081_SNP [dm6]	G	C	3.983e^-4	0.782	SYNONYMOUS_CODING ort
3L	20784765	3L_20784765_SNP [dm3] 3L_20791665_SNP [dm6]	C	A	3.987e^-4	0.782	INTRON Six4
2R	13119304	2R_13119304_SNP [dm3] 2R_17231799_SNP [dm6]	T	G	3.994e^-4	0.783	INTRON mbl
2R	4753283	2R_4753283_SNP [dm3] 2R_8865778_SNP [dm6]	C	T	4.015e^-4	0.784	INTRON RyR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7068856	2R_7068856_SNP [dm3] 2R_11181351_SNP [dm6]	G	A	4.015e^-4	0.784	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11490525	2L_11490525_SNP [dm3] 2L_11490525_SNP [dm6]	C	T	4.020e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14217301	X_14217301_SNP [dm3] X_14323268_SNP [dm6]	A	T	4.020e^-4	0.784	INTRON dpr8	TF binding site BDTNP1_TFBS_da
2R	3519025	2R_3519025_SNP [dm3] 2R_7631520_SNP [dm6]	A	C	4.026e^-4	0.784	INTRON CG43340 EXON CR45131
2R	17768964	2R_17768964_SNP [dm3] 2R_21881459_SNP [dm6]	C	T	4.027e^-4	0.784	UTR_3_PRIME PpN58A INTRON Fili
2L	10543507	2L_10543507_SNP [dm3] 2L_10543507_SNP [dm6]	A	T	4.034e^-4	0.784	EXON CR44618	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1318497	2R_1318497_SNP [dm3] 2R_5430992_SNP [dm6]	T	A	4.036e^-4	0.784	INTRON laccase2	transposable element FlyBase
2L	1620047	2L_1620047_INS [dm3] 2L_1620047_INS [dm6]	T	TTT	4.038e^-4	0.784	EXON CR44603
3L	16977840	3L_16977840_SNP [dm3] 3L_16984740_SNP [dm6]	C	A	4.045e^-4	0.784	INTRON Exn
2L	7154818	2L_7154818_SNP [dm3] 2L_7154818_SNP [dm6]	C	T	4.051e^-4	0.784	INTRON Pvf3
2L	1999129	2L_1999129_SNP [dm3] 2L_1999129_SNP [dm6]	A	G	4.057e^-4	0.784	UPSTREAM CR43464 INTRON CG33543
3L	7815690	3L_7815690_SNP [dm3] 3L_7822590_SNP [dm6]	C	T	4.059e^-4	0.784	INTRON Pdp1
2L	16177303	2L_16177303_SNP [dm3] 2L_16177303_SNP [dm6]	G	A	4.066e^-4	0.784	INTRON Ca-alpha1D
2L	5614265	2L_5614265_SNP [dm3] 2L_5614265_SNP [dm6]	G	A	4.071e^-4	0.784	UPSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6531284	2L_6531284_SNP [dm3] 2L_6531284_SNP [dm6]	G	T	4.073e^-4	0.784	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11118455	3L_11118455_SNP [dm3] 3L_11125355_SNP [dm6]	C	T	4.077e^-4	0.784	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	4752490	2R_4752490_SNP [dm3] 2R_8864985_SNP [dm6]	G	C	4.079e^-4	0.784	INTRON RyR
X	14104061	X_14104061_SNP [dm3] X_14210028_SNP [dm6]	A	C	4.081e^-4	0.784	INTRON l_1_G0007 & 1 other
2R	9953808	2R_9953808_SNP [dm3] 2R_14066303_SNP [dm6]	T	C	4.086e^-4	0.784	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15487985	3R_15487985_SNP [dm3] 3R_19662263_SNP [dm6]	T	A	4.111e^-4	0.786	INTRON ort
3R	19613487	3R_19613487_SNP [dm3] 3R_23787765_SNP [dm6]	T	C	4.111e^-4	0.786	INTRON mbc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6932919	2R_6932919_SNP [dm3] 2R_11045414_SNP [dm6]	C	G	4.113e^-4	0.786	INTRON luna
2R	15391214	2R_15391214_SNP [dm3] 2R_19503709_SNP [dm6]	C	G	4.116e^-4	0.786	SYNONYMOUS_CODING CG11007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15002577	2R_15002577_SNP [dm3] 2R_19115072_SNP [dm6]	G	A	4.117e^-4	0.786	INTRON 5-HT1A
3R	13636077	3R_13636077_SNP [dm3] 3R_17810355_SNP [dm6]	C	T	4.129e^-4	0.786	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17768379	3R_17768379_SNP [dm3] 3R_21942657_SNP [dm6]	T	C	4.131e^-4	0.786	INTERGENIC
2R	19484201	2R_19484201_SNP [dm3] 2R_23596678_SNP [dm6]	A	G	4.132e^-4	0.786	UTR_5_PRIME apt INTRON apt	TF binding site mE1_TFBS_sens
2R	10229376	2R_10229376_SNP [dm3] 2R_14341871_SNP [dm6]	C	A	4.136e^-4	0.786	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7584323	3R_7584323_DEL [dm3] 3R_11758601_DEL [dm6]	TCT	T	4.141e^-4	0.786	INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	2954187	3L_2954187_SNP [dm3] 3L_2954187_SNP [dm6]	C	T	4.148e^-4	0.786	DOWNSTREAM Shab INTRON Shab
3R	10154628	3R_10154628_INS [dm3] 3R_14328906_INS [dm6]	C	CAAC	4.154e^-4	0.786	DOWNSTREAM NK7.1 INTRON spn-B	TF binding site mE1_TFBS_sens
2R	12564543	2R_12564543_SNP [dm3] 2R_16677038_SNP [dm6]	A	T	4.171e^-4	0.786	INTRON CG30463
3L	3283676	3L_3283676_SNP [dm3] 3L_3283676_SNP [dm6]	G	T	4.178e^-4	0.786	INTRON CG12017
2L	11494802	2L_11494802_SNP [dm3] 2L_11494802_SNP [dm6]	A	C	4.189e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19387494	3R_19387494_SNP [dm3] 3R_23561772_SNP [dm6]	G	A	4.190e^-4	0.786	INTRON beat-IV	TF binding site mE1_TFBS_inv
2R	12699783	2R_12699783_SNP [dm3] 2R_16812278_SNP [dm6]	T	A	4.195e^-4	0.786	EXON CR44379
2R	3560703	2R_3560703_SNP [dm3] 2R_7673198_SNP [dm6]	A	G	4.197e^-4	0.786	DOWNSTREAM mRpL52 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14398205	X_14398205_SNP [dm3] X_14504172_SNP [dm6]	C	T	4.200e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8227285	2L_8227285_SNP [dm3] 2L_8227285_SNP [dm6]	C	G	4.200e^-4	0.786	INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11178037	3L_11178037_SNP [dm3] 3L_11184937_SNP [dm6]	G	A	4.204e^-4	0.786	INTRON GlcAT-P
3R	19310757	3R_19310757_SNP [dm3] 3R_23485035_SNP [dm6]	C	T	4.205e^-4	0.786	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA
2R	16954760	2R_16954760_SNP [dm3] 2R_21067255_SNP [dm6]	G	C	4.207e^-4	0.786	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Cuticul_n_C24 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results