DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.850e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.05924

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	8.7175	0.0128

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2039 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	20779226	2L_20779226_SNP [dm3] 2L_20779226_SNP [dm6]	T	A	2.239e^-7	0.42	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9204851	2R_9204851_SNP [dm3] 2R_13317346_SNP [dm6]	G	C	6.586e^-7	0.56	INTERGENIC
2L	11711895	2L_11711895_SNP [dm3] 2L_11711895_SNP [dm6]	A	T	8.963e^-7	0.56	INTERGENIC
3R	23285677	3R_23285677_SNP [dm3] 3R_27459955_SNP [dm6]	A	C	2.508e^-6	0.761	INTERGENIC
2L	11711766	2L_11711766_SNP [dm3] 2L_11711766_SNP [dm6]	G	A	2.643e^-6	0.761	INTERGENIC
2L	11711746	2L_11711746_SNP [dm3] 2L_11711746_SNP [dm6]	G	T	2.645e^-6	0.761	INTERGENIC
2L	11711870	2L_11711870_SNP [dm3] 2L_11711870_SNP [dm6]	A	C	3.897e^-6	0.761	INTERGENIC
2L	11711904	2L_11711904_SNP [dm3] 2L_11711904_SNP [dm6]	G	T	4.307e^-6	0.761	INTERGENIC
3L	9013818	3L_9013818_SNP [dm3] 3L_9020718_SNP [dm6]	C	T	4.700e^-6	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22697345	3R_22697345_SNP [dm3] 3R_26871623_SNP [dm6]	A	T	4.955e^-6	0.761	DOWNSTREAM Rb97D INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11302181	2R_11302181_SNP [dm3] 2R_15414676_SNP [dm6]	C	T	5.520e^-6	0.761	INTRON CG43729
2L	11712081	2L_11712081_SNP [dm3] 2L_11712081_SNP [dm6]	G	C	5.573e^-6	0.761	INTERGENIC
2L	11711936	2L_11711936_DEL [dm3] 2L_11711936_DEL [dm6]	AT	A	5.885e^-6	0.761	INTERGENIC
2R	5980305	2R_5980305_SNP [dm3] 2R_10092800_SNP [dm6]	C	T	6.084e^-6	0.761	INTRON CG2269
2R	11302147	2R_11302147_SNP [dm3] 2R_15414642_SNP [dm6]	A	T	6.293e^-6	0.761	INTRON CG43729
2L	11711879	2L_11711879_INS [dm3] 2L_11711879_INS [dm6]	T	TT	6.493e^-6	0.761	INTERGENIC
X	4621904	X_4621904_SNP [dm3] X_4727871_SNP [dm6]	G	A	7.157e^-6	0.779	SYNONYMOUS_CODING Proc-R
3R	23286495	3R_23286495_SNP [dm3] 3R_27460773_SNP [dm6]	T	C	7.486e^-6	0.779	INTERGENIC
2R	11067574	2R_11067574_SNP [dm3] 2R_15180069_SNP [dm6]	T	A	8.025e^-6	0.779	INTRON igl
2R	18053144	2R_18053144_SNP [dm3] 2R_22165639_SNP [dm6]	A	G	8.400e^-6	0.779	INTRON a
3L	11063463	3L_11063463_SNP [dm3] 3L_11070363_SNP [dm6]	C	T	9.644e^-6	0.779	UPSTREAM Mocs1 & 1 other INTERGENIC
2R	12316948	2R_12316948_SNP [dm3] 2R_16429443_SNP [dm6]	T	A	9.678e^-6	0.779	UTR_3_PRIME Sema-2b INTRON Sema-2b
2L	11711760	2L_11711760_INS [dm3] 2L_11711760_INS [dm6]	A	AGTTGATATCTTGATGATTG...	1.056e^-5	0.779	INTERGENIC
3R	25145594	3R_25145594_SNP [dm3] 3R_29319872_SNP [dm6]	T	C	1.092e^-5	0.779	UPSTREAM Cnx99A INTERGENIC
2R	10999487	2R_10999487_DEL [dm3] 2R_15111982_DEL [dm6]	CCCGAGTGCTGGGC...	C	1.094e^-5	0.779	INTERGENIC
3L	2999686	3L_2999686_SNP [dm3] 3L_2999686_SNP [dm6]	C	T	1.106e^-5	0.779	INTERGENIC
2L	15181501	2L_15181501_SNP [dm3] 2L_15181501_SNP [dm6]	G	A	1.121e^-5	0.779	INTRON CG4168
2L	15180457	2L_15180457_SNP [dm3] 2L_15180457_SNP [dm6]	T	C	1.189e^-5	0.796	INTRON CG4168
2L	11711796	2L_11711796_INS [dm3] 2L_11711796_INS [dm6]	C	AAA	1.342e^-5	0.844	INTERGENIC
2R	11302202	2R_11302202_SNP [dm3] 2R_15414697_SNP [dm6]	G	C	1.458e^-5	0.844	INTRON CG43729
3L	692909	3L_692909_DEL [dm3] 3L_692909_DEL [dm6]	GTAATACAG	G	1.478e^-5	0.844	UTR_5_PRIME Vti1 DOWNSTREAM RabX6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19489507	2R_19489507_SNP [dm3] 2R_23601984_SNP [dm6]	T	C	1.521e^-5	0.844	UTR_3_PRIME CG43209 UPSTREAM IM18 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	6652153	X_6652153_SNP [dm3] X_6758120_SNP [dm6]	A	G	1.523e^-5	0.844	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	15365183	3R_15365183_SNP [dm3] 3R_19539461_SNP [dm6]	A	G	1.582e^-5	0.844	INTRON Dys
2L	11478017	2L_11478017_SNP [dm3] 2L_11478017_SNP [dm6]	A	T	1.613e^-5	0.844	INTERGENIC
2L	10441695	2L_10441695_SNP [dm3] 2L_10441695_SNP [dm6]	G	A	1.720e^-5	0.844	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
2L	10441696	2L_10441696_SNP [dm3] 2L_10441696_SNP [dm6]	G	C	1.720e^-5	0.844	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
2R	5980255	2R_5980255_SNP [dm3] 2R_10092750_SNP [dm6]	C	A	1.768e^-5	0.844	INTRON CG2269
3R	20415354	3R_20415354_SNP [dm3] 3R_24589632_SNP [dm6]	C	T	1.788e^-5	0.844	INTRON mld	TF binding site mE1_TFBS_HSA
2R	4717686	2R_4717686_DEL [dm3] 2R_8830181_DEL [dm6]	TT	T	1.852e^-5	0.844	INTRON sns	TF binding site mE1_TFBS_chinmo
3R	16771744	3R_16771744_DEL [dm3] 3R_20946022_DEL [dm6]	TG	C	1.921e^-5	0.844	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5761815	2L_5761815_DEL [dm3] 2L_5761815_DEL [dm6]	TAAT	T	1.937e^-5	0.844	UTR_3_PRIME CG11030 DOWNSTREAM obst-E
2R	18893877	2R_18893877_SNP [dm3] 2R_23006354_SNP [dm6]	A	C	1.997e^-5	0.844	INTRON twi
2L	11711818	2L_11711818_SNP [dm3] 2L_11711818_SNP [dm6]	G	A	2.038e^-5	0.844	INTERGENIC
2R	9455788	2R_9455788_SNP [dm3] 2R_13568283_SNP [dm6]	A	G	2.177e^-5	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9198695	2R_9198695_SNP [dm3] 2R_13311190_SNP [dm6]	T	A	2.180e^-5	0.844	INTERGENIC
3R	23285326	3R_23285326_SNP [dm3] 3R_27459604_SNP [dm6]	A	G	2.282e^-5	0.844	INTERGENIC
3R	23549190	3R_23549190_SNP [dm3] 3R_27723468_SNP [dm6]	A	G	2.328e^-5	0.844	INTERGENIC
2L	11711852	2L_11711852_SNP [dm3] 2L_11711852_SNP [dm6]	A	G	2.361e^-5	0.844	INTERGENIC
2R	5557929	2R_5557929_SNP [dm3] 2R_9670424_SNP [dm6]	C	T	2.374e^-5	0.844	INTRON Mmp2
3R	16771747	3R_16771747_SNP [dm3] 3R_20946025_SNP [dm6]	T	C	2.469e^-5	0.844	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16771750	3R_16771750_SNP [dm3] 3R_20946028_SNP [dm6]	G	A	2.469e^-5	0.844	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15172426	2L_15172426_SNP [dm3] 2L_15172426_SNP [dm6]	T	C	2.472e^-5	0.844	INTRON CG4168
2L	11711849	2L_11711849_SNP [dm3] 2L_11711849_SNP [dm6]	G	C	2.494e^-5	0.844	INTERGENIC
3R	5137947	3R_5137947_DEL [dm3] 3R_9312225_DEL [dm6]	AA	A	2.504e^-5	0.844	INTRON CG8861
2R	9456172	2R_9456172_SNP [dm3] 2R_13568667_SNP [dm6]	T	C	2.557e^-5	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	10998820	2R_10998820_SNP [dm3] 2R_15111315_SNP [dm6]	A	G	2.564e^-5	0.844	INTERGENIC
3R	16771739	3R_16771739_DEL [dm3] 3R_20946017_DEL [dm6]	CG	C	2.771e^-5	0.888	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3R	19075318	3R_19075318_SNP [dm3] 3R_23249596_SNP [dm6]	G	C	2.795e^-5	0.888	NON_SYNONYMOUS_CODING CG4449 UPSTREAM CG4467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	10589924	2L_10589924_INS [dm3] 2L_10589924_INS [dm6]	G	GG	2.982e^-5	0.896	INTRON Trim9
2R	19489390	2R_19489390_DEL [dm3] 2R_23601867_DEL [dm6]	TAT	T	3.012e^-5	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9623401	2R_9623401_SNP [dm3] 2R_13735896_SNP [dm6]	C	A	3.131e^-5	0.896	INTRON fas
2L	12200331	2L_12200331_SNP [dm3] 2L_12200331_SNP [dm6]	C	T	3.185e^-5	0.896	UPSTREAM aret INTRON aret
3L	11637380	3L_11637380_SNP [dm3] 3L_11644280_SNP [dm6]	G	A	3.253e^-5	0.896	SYNONYMOUS_CODING CG6071
2R	11302190	2R_11302190_SNP [dm3] 2R_15414685_SNP [dm6]	T	A	3.325e^-5	0.896	INTRON CG43729
3R	25217450	3R_25217450_SNP [dm3] 3R_29391728_SNP [dm6]	A	C	3.381e^-5	0.896	INTRON Ptp99A
2L	12397982	2L_12397982_SNP [dm3] 2L_12397982_SNP [dm6]	T	C	3.501e^-5	0.896	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
X	6652205	X_6652205_DEL [dm3] X_6758172_DEL [dm6]	AA	A	3.515e^-5	0.896	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	13968167	2L_13968167_SNP [dm3] 2L_13968167_SNP [dm6]	C	A	3.525e^-5	0.896	UPSTREAM NimB3 DOWNSTREAM NimB4 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16111202	2L_16111202_SNP [dm3] 2L_16111202_SNP [dm6]	G	A	3.572e^-5	0.896	INTERGENIC
3R	18922521	3R_18922521_SNP [dm3] 3R_23096799_SNP [dm6]	C	T	3.594e^-5	0.896	SYNONYMOUS_CODING CG17109 UPSTREAM CG6733 INTRON CG13830
3R	23540032	3R_23540032_SNP [dm3] 3R_27714310_SNP [dm6]	C	A	3.600e^-5	0.896	INTERGENIC
3R	19100982	3R_19100982_SNP [dm3] 3R_23275260_SNP [dm6]	G	A	3.621e^-5	0.896	INTRON orb	TF binding site mE1_TFBS_cad
2R	17599829	2R_17599829_SNP [dm3] 2R_21712324_SNP [dm6]	C	G	3.674e^-5	0.896	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16457376	2R_16457376_MNP [dm3] 2R_20569871_MNP [dm6]	CAT	TTG	3.718e^-5	0.896	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7996645	2L_7996645_SNP [dm3] 2L_7996645_SNP [dm6]	C	G	3.761e^-5	0.896	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
3R	11831495	3R_11831495_SNP [dm3] 3R_16005773_SNP [dm6]	C	G	3.880e^-5	0.896	INTRON CR42839	TF binding site mE1_TFBS_cad
3R	11994903	3R_11994903_SNP [dm3] 3R_16169181_SNP [dm6]	T	G	4.089e^-5	0.896	UPSTREAM CR43472 INTRON CG6006	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	20270609	3R_20270609_SNP [dm3] 3R_24444887_SNP [dm6]	A	T	4.160e^-5	0.896	INTRON nAChRalpha1
2R	16457367	2R_16457367_SNP [dm3] 2R_20569862_SNP [dm6]	C	T	4.200e^-5	0.896	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3897121	2L_3897121_SNP [dm3] 2L_3897121_SNP [dm6]	C	T	4.252e^-5	0.896	INTRON capu
2R	17600207	2R_17600207_SNP [dm3] 2R_21712702_SNP [dm6]	C	T	4.269e^-5	0.896	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17600190	2R_17600190_SNP [dm3] 2R_21712685_SNP [dm6]	T	A	4.294e^-5	0.896	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8476012	3R_8476012_SNP [dm3] 3R_12650290_SNP [dm6]	C	T	4.318e^-5	0.896	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	2999695	3L_2999695_SNP [dm3] 3L_2999695_SNP [dm6]	A	G	4.424e^-5	0.896	INTERGENIC
3R	429641	3R_429641_SNP [dm3] 3R_4603919_SNP [dm6]	T	A	4.490e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	12346985	X_12346985_SNP [dm3] X_12452952_SNP [dm6]	G	A	4.499e^-5	0.896	SYNONYMOUS_CODING Pkcdelta
2L	11711817	2L_11711817_SNP [dm3] 2L_11711817_SNP [dm6]	T	A	4.818e^-5	0.896	INTERGENIC
2R	14397453	2R_14397453_SNP [dm3] 2R_18509948_SNP [dm6]	T	C	4.852e^-5	0.896	INTERGENIC
X	18693698	X_18693698_SNP [dm3] X_18799665_SNP [dm6]	T	A	4.921e^-5	0.896	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	558934	X_558934_SNP [dm3] X_664901_SNP [dm6]	A	G	4.958e^-5	0.896	INTERGENIC
2R	5563360	2R_5563360_SNP [dm3] 2R_9675855_SNP [dm6]	C	T	4.979e^-5	0.896	INTRON Mmp2
3L	9337128	3L_9337128_SNP [dm3] 3L_9344028_SNP [dm6]	A	C	5.049e^-5	0.896	UPSTREAM PGRP-LC INTRON PGRP-LC
3L	1070548	3L_1070548_SNP [dm3] 3L_1070548_SNP [dm6]	C	T	5.060e^-5	0.896	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3R	8476212	3R_8476212_SNP [dm3] 3R_12650490_SNP [dm6]	T	A	5.107e^-5	0.896	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1
2R	9454414	2R_9454414_SNP [dm3] 2R_13566909_SNP [dm6]	G	A	5.126e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23540031	3R_23540031_SNP [dm3] 3R_27714309_SNP [dm6]	T	G	5.185e^-5	0.896	INTERGENIC
2R	10992462	2R_10992462_SNP [dm3] 2R_15104957_SNP [dm6]	G	A	5.242e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1021791	3L_1021791_SNP [dm3] 3L_1021791_SNP [dm6]	A	G	5.257e^-5	0.896	INTRON trio
2R	16457372	2R_16457372_SNP [dm3] 2R_20569867_SNP [dm6]	A	C	5.282e^-5	0.896	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23474601	3R_23474601_SNP [dm3] 3R_27648879_SNP [dm6]	A	T	5.334e^-5	0.896	NON_SYNONYMOUS_CODING tau INTRON tau
3L	13248941	3L_13248941_SNP [dm3] 3L_13255841_SNP [dm6]	T	G	5.344e^-5	0.896	INTRON caps
3L	8116753	3L_8116753_SNP [dm3] 3L_8123653_SNP [dm6]	A	T	5.430e^-5	0.896	UTR_3_PRIME CG7550 DOWNSTREAM mRpL36 & 1 other	TF binding site mE1_TFBS_cad
2R	10998845	2R_10998845_SNP [dm3] 2R_15111340_SNP [dm6]	A	T	5.435e^-5	0.896	INTERGENIC
3L	1497729	3L_1497729_SNP [dm3] 3L_1497729_SNP [dm6]	G	A	5.445e^-5	0.896	SYNONYMOUS_CODING pUf68	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17600155	2R_17600155_SNP [dm3] 2R_21712650_SNP [dm6]	T	C	5.468e^-5	0.896	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14707269	3R_14707269_SNP [dm3] 3R_18881547_SNP [dm6]	C	T	5.568e^-5	0.896	INTERGENIC
3R	4571344	3R_4571344_SNP [dm3] 3R_8745622_SNP [dm6]	A	G	5.666e^-5	0.896	UTR_5_PRIME CG9801 INTRON CG9801
X	15253021	X_15253021_SNP [dm3] X_15358988_SNP [dm6]	C	T	5.668e^-5	0.896	DOWNSTREAM Pp1-13C INTRON acj6
3R	16771752	3R_16771752_SNP [dm3] 3R_20946030_SNP [dm6]	G	C	5.724e^-5	0.896	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7765032	2R_7765032_SNP [dm3] 2R_11877527_SNP [dm6]	G	T	5.982e^-5	0.896	NON_SYNONYMOUS_CODING CG13185
X	14194317	X_14194317_SNP [dm3] X_14300284_SNP [dm6]	A	G	6.006e^-5	0.896	INTERGENIC
3R	17861676	3R_17861676_DEL [dm3] 3R_22035954_DEL [dm6]	TGGCAAT	T	6.015e^-5	0.896	CODON_DELETION pit UPSTREAM scaRNA:MeU5-G38 DOWNSTREAM Fadd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19059213	3R_19059213_SNP [dm3] 3R_23233491_SNP [dm6]	A	G	6.039e^-5	0.896	INTRON CG4467	TF binding site mE1_TFBS_cad
2L	1885620	2L_1885620_SNP [dm3] 2L_1885620_SNP [dm6]	G	A	6.071e^-5	0.896	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17658734	X_17658734_SNP [dm3] X_17764701_SNP [dm6]	C	A	6.091e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11711802	2L_11711802_SNP [dm3] 2L_11711802_SNP [dm6]	T	A	6.154e^-5	0.896	INTERGENIC
2L	12154189	2L_12154189_SNP [dm3] 2L_12154189_SNP [dm6]	A	G	6.294e^-5	0.896	INTRON CG31760
2R	16457507	2R_16457507_SNP [dm3] 2R_20570002_SNP [dm6]	A	T	6.351e^-5	0.896	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4539923	X_4539923_SNP [dm3] X_4645890_SNP [dm6]	A	G	6.399e^-5	0.896	SYNONYMOUS_CODING HLH4C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16823547	3R_16823547_SNP [dm3] 3R_20997825_SNP [dm6]	G	A	6.558e^-5	0.896	INTRON Calx
3R	23540220	3R_23540220_SNP [dm3] 3R_27714498_SNP [dm6]	C	T	6.568e^-5	0.896	INTERGENIC
3R	3964138	3R_3964138_SNP [dm3] 3R_8138416_SNP [dm6]	A	G	6.598e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	6906991	3L_6906991_SNP [dm3] 3L_6913891_SNP [dm6]	A	C	6.626e^-5	0.896	START_GAINED Prat2 UTR_5_PRIME Prat2 INTRON Prat2
2L	20788053	2L_20788053_SNP [dm3] 2L_20788053_SNP [dm6]	C	T	6.645e^-5	0.896	SYNONYMOUS_CODING Pomp DOWNSTREAM vari	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
3R	26095456	3R_26095456_SNP [dm3] 3R_30269734_SNP [dm6]	G	T	6.667e^-5	0.896	INTERGENIC
2L	11711847	2L_11711847_SNP [dm3] 2L_11711847_SNP [dm6]	A	G	6.803e^-5	0.896	INTERGENIC
3L	11637627	3L_11637627_SNP [dm3] 3L_11644527_SNP [dm6]	G	A	6.838e^-5	0.896	NON_SYNONYMOUS_CODING CG6071
3R	21303201	3R_21303201_SNP [dm3] 3R_25477479_SNP [dm6]	C	T	6.910e^-5	0.896	SYNONYMOUS_CODING MED28 UPSTREAM CG4553 DOWNSTREAM XNP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	24958895	3R_24958895_DEL [dm3] 3R_29133173_DEL [dm6]	CC	C	6.910e^-5	0.896	INTRON Vha100-1
X	3101663	X_3101663_SNP [dm3] X_3207630_SNP [dm6]	T	G	6.913e^-5	0.896	INTRON dnc
3R	24200725	3R_24200725_SNP [dm3] 3R_28375003_SNP [dm6]	A	G	6.979e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5980207	2R_5980207_SNP [dm3] 2R_10092702_SNP [dm6]	C	G	7.039e^-5	0.896	INTRON CG2269
2R	9455807	2R_9455807_SNP [dm3] 2R_13568302_SNP [dm6]	C	A	7.055e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	7332186	2L_7332186_SNP [dm3] 2L_7332186_SNP [dm6]	C	A	7.221e^-5	0.896	INTERGENIC
2L	11711840	2L_11711840_SNP [dm3] 2L_11711840_SNP [dm6]	G	A	7.227e^-5	0.896	INTERGENIC
2L	11591901	2L_11591901_SNP [dm3] 2L_11591901_SNP [dm6]	T	A	7.255e^-5	0.896	UPSTREAM Acp33A INTRON kek2
2L	8452242	2L_8452242_DEL [dm3] 2L_8452242_DEL [dm6]	CACTT	C	7.260e^-5	0.896	UPSTREAM fu12 INTRON fu12
2R	16415615	2R_16415615_SNP [dm3] 2R_20528110_SNP [dm6]	G	T	7.261e^-5	0.896	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12213677	2L_12213677_SNP [dm3] 2L_12213677_SNP [dm6]	T	A	7.324e^-5	0.896	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7910248	X_7910248_SNP [dm3] X_8016215_SNP [dm6]	A	G	7.363e^-5	0.896	INTRON Tbh
X	6652134	X_6652134_DEL [dm3] X_6758101_DEL [dm6]	CAAGT	C	7.379e^-5	0.896	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	11711950	2L_11711950_SNP [dm3] 2L_11711950_SNP [dm6]	T	G	7.445e^-5	0.896	INTERGENIC
3R	24380547	3R_24380547_SNP [dm3] 3R_28554825_SNP [dm6]	A	T	7.446e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16457371	2R_16457371_SNP [dm3] 2R_20569866_SNP [dm6]	A	G	7.528e^-5	0.896	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	5523103	X_5523103_SNP [dm3] X_5629070_SNP [dm6]	C	T	7.640e^-5	0.896	INTRON CG42492
3R	4570598	3R_4570598_SNP [dm3] 3R_8744876_SNP [dm6]	T	C	7.646e^-5	0.896	INTRON CG9801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10918683	2L_10918683_SNP [dm3] 2L_10918683_SNP [dm6]	A	T	7.653e^-5	0.896	INTRON dpr2
2R	14397272	2R_14397272_SNP [dm3] 2R_18509767_SNP [dm6]	A	G	7.694e^-5	0.896	INTERGENIC
X	12110326	X_12110326_DEL [dm3] X_12216293_DEL [dm6]	AAA	A	7.740e^-5	0.896	INTRON Ten-a
3R	4849139	3R_4849139_SNP [dm3] 3R_9023417_SNP [dm6]	T	A	7.887e^-5	0.896	SPLICE_SITE_DONOR CR31429 NON_SYNONYMOUS_CODING neur INTRON CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	12317036	2R_12317036_SNP [dm3] 2R_16429531_SNP [dm6]	C	T	7.992e^-5	0.896	INTRON Sema-2b
3R	16080240	3R_16080240_SNP [dm3] 3R_20254518_SNP [dm6]	C	A	8.019e^-5	0.896	INTRON cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13497251	3R_13497251_SNP [dm3] 3R_17671529_SNP [dm6]	C	A	8.039e^-5	0.896	SYNONYMOUS_CODING ald UPSTREAM CG7523
3L	12085119	3L_12085119_SNP [dm3] 3L_12092019_SNP [dm6]	C	G	8.107e^-5	0.896	INTERGENIC
3R	23286416	3R_23286416_SNP [dm3] 3R_27460694_SNP [dm6]	A	C	8.167e^-5	0.896	INTERGENIC
2R	7058679	2R_7058679_SNP [dm3] 2R_11171174_SNP [dm6]	G	A	8.176e^-5	0.896	INTRON shn & 1 other
2L	3211485	2L_3211485_SNP [dm3] 2L_3211485_SNP [dm6]	T	C	8.182e^-5	0.896	DOWNSTREAM CR45336 INTERGENIC
2R	5551405	2R_5551405_SNP [dm3] 2R_9663900_SNP [dm6]	A	T	8.197e^-5	0.896	INTRON Mmp2	TF binding site mE1_TFBS_inv
X	6651486	X_6651486_SNP [dm3] X_6757453_SNP [dm6]	G	C	8.278e^-5	0.896	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	10230725	2R_10230725_SNP [dm3] 2R_14343220_SNP [dm6]	G	A	8.334e^-5	0.896	INTRON Shroom
2L	11711839	2L_11711839_SNP [dm3] 2L_11711839_SNP [dm6]	G	A	8.375e^-5	0.896	INTERGENIC
X	1312234	X_1312234_SNP [dm3] X_1418201_SNP [dm6]	G	A	8.389e^-5	0.896	INTRON futsch
2R	19489380	2R_19489380_SNP [dm3] 2R_23601857_SNP [dm6]	A	T	8.433e^-5	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23285327	3R_23285327_SNP [dm3] 3R_27459605_SNP [dm6]	G	A	8.618e^-5	0.896	INTERGENIC
2R	8539503	2R_8539503_SNP [dm3] 2R_12651998_SNP [dm6]	G	T	8.745e^-5	0.896	SYNONYMOUS_CODING CG8778 UPSTREAM ZnT49B
2R	8539555	2R_8539555_SNP [dm3] 2R_12652050_SNP [dm6]	T	A	8.745e^-5	0.896	UPSTREAM ZnT49B INTRON CG8778
2R	8539677	2R_8539677_SNP [dm3] 2R_12652172_SNP [dm6]	T	A	8.745e^-5	0.896	SYNONYMOUS_CODING CG8778 UPSTREAM ZnT49B
2R	8539701	2R_8539701_SNP [dm3] 2R_12652196_SNP [dm6]	G	C	8.745e^-5	0.896	SYNONYMOUS_CODING CG8778 UPSTREAM ZnT49B
2R	8541401	2R_8541401_SNP [dm3] 2R_12653896_SNP [dm6]	C	T	8.745e^-5	0.896	SYNONYMOUS_CODING ZnT49B
2R	8541580	2R_8541580_SNP [dm3] 2R_12654075_SNP [dm6]	C	T	8.745e^-5	0.896	INTRON ZnT49B
X	6542747	X_6542747_SNP [dm3] X_6648714_SNP [dm6]	T	A	8.809e^-5	0.896	NON_SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3L	5043376	3L_5043376_SNP [dm3] 3L_5043376_SNP [dm6]	T	A	8.901e^-5	0.896	INTRON Con
3L	1403592	3L_1403592_SNP [dm3] 3L_1403592_SNP [dm6]	T	C	9.102e^-5	0.896	INTRON Ptp61F
2R	11966506	2R_11966506_SNP [dm3] 2R_16079001_SNP [dm6]	A	G	9.139e^-5	0.896	UPSTREAM CR43415 INTERGENIC
3R	13373449	3R_13373449_SNP [dm3] 3R_17547727_SNP [dm6]	A	T	9.143e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20119197	3R_20119197_SNP [dm3] 3R_24293475_SNP [dm6]	T	G	9.262e^-5	0.896	SYNONYMOUS_CODING CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_sens
3R	26095329	3R_26095329_SNP [dm3] 3R_30269607_SNP [dm6]	G	C	9.295e^-5	0.896	INTERGENIC
X	17364283	X_17364283_SNP [dm3] X_17470250_SNP [dm6]	G	C	9.340e^-5	0.896	INTRON CG43658
2L	2310032	2L_2310032_SNP [dm3] 2L_2310032_SNP [dm6]	C	T	9.389e^-5	0.896	INTRON CG9967
3R	25353929	3R_25353929_SNP [dm3] 3R_29528207_SNP [dm6]	C	T	9.556e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15050284	3L_15050284_SNP [dm3] 3L_15057184_SNP [dm6]	A	G	9.616e^-5	0.896	INTRON Sytbeta
X	579609	X_579609_SNP [dm3] X_685576_SNP [dm6]	A	G	9.635e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21264525	3R_21264525_SNP [dm3] 3R_25438803_SNP [dm6]	G	A	9.743e^-5	0.896	INTRON Fur1
3L	5043370	3L_5043370_SNP [dm3] 3L_5043370_SNP [dm6]	C	A	9.755e^-5	0.896	INTRON Con
3R	516736	3R_516736_SNP [dm3] 3R_4691014_SNP [dm6]	T	C	9.844e^-5	0.896	UPSTREAM CG33927 INTRON CG43427	transposable element FlyBase
X	577271	X_577271_SNP [dm3] X_683238_SNP [dm6]	T	C	9.852e^-5	0.896	INTERGENIC
3R	26095469	3R_26095469_SNP [dm3] 3R_30269747_SNP [dm6]	G	A	9.853e^-5	0.896	INTERGENIC
2L	15167562	2L_15167562_SNP [dm3] 2L_15167562_SNP [dm6]	G	A	9.880e^-5	0.896	INTRON CG4168
3R	17069114	3R_17069114_SNP [dm3] 3R_21243392_SNP [dm6]	T	A	9.953e^-5	0.896	INTRON CG5892	TF binding site mE1_TFBS_inv
2R	8658989	2R_8658989_SNP [dm3] 2R_12771484_SNP [dm6]	T	C	1.006e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10074895	2R_10074895_SNP [dm3] 2R_14187390_SNP [dm6]	C	A	1.008e^-4	0.896	INTRON CG30069
3R	26078862	3R_26078862_SNP [dm3] 3R_30253140_SNP [dm6]	G	T	1.012e^-4	0.896	UPSTREAM CG18404 DOWNSTREAM CG9682 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21055978	X_21055978_SNP [dm3] X_21184951_SNP [dm6]	T	C	1.028e^-4	0.896	INTERGENIC
2L	8451481	2L_8451481_SNP [dm3] 2L_8451481_SNP [dm6]	C	G	1.042e^-4	0.896	START_GAINED fu12 UTR_5_PRIME fu12 UPSTREAM fu12 INTRON fu12
2L	12213680	2L_12213680_SNP [dm3] 2L_12213680_SNP [dm6]	A	G	1.050e^-4	0.896	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1495687	3L_1495687_INS [dm3] 3L_1495687_INS [dm6]	C	CGCC	1.066e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
3R	26067791	3R_26067791_SNP [dm3] 3R_30242069_SNP [dm6]	C	T	1.070e^-4	0.896	INTRON CG9737	TF binding site mE1_TFBS_HSA
2R	5557574	2R_5557574_INS [dm3] 2R_9670069_INS [dm6]	A	ATAATAAAATAATAATAATA...	1.072e^-4	0.896	INTRON Mmp2
3L	4579211	3L_4579211_SNP [dm3] 3L_4579211_SNP [dm6]	T	G	1.076e^-4	0.896	INTRON CG42540
2R	8539173	2R_8539173_SNP [dm3] 2R_12651668_SNP [dm6]	A	G	1.080e^-4	0.896	SYNONYMOUS_CODING CG8778
3L	12085140	3L_12085140_SNP [dm3] 3L_12092040_SNP [dm6]	C	T	1.098e^-4	0.896	INTERGENIC
3R	11252621	3R_11252621_SNP [dm3] 3R_15426899_SNP [dm6]	G	A	1.102e^-4	0.896	UPSTREAM CG6118 INTRON CG6118
2R	8540261	2R_8540261_SNP [dm3] 2R_12652756_SNP [dm6]	C	A	1.103e^-4	0.896	UPSTREAM ZnT49B & 1 other INTERGENIC
3R	22784457	3R_22784457_SNP [dm3] 3R_26958735_SNP [dm6]	G	A	1.107e^-4	0.896	UPSTREAM CG6330 INTERGENIC
3R	21303021	3R_21303021_SNP [dm3] 3R_25477299_SNP [dm6]	T	C	1.108e^-4	0.896	SYNONYMOUS_CODING MED28 UPSTREAM CG4553 DOWNSTREAM XNP	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	25750734	3R_25750734_SNP [dm3] 3R_29925012_SNP [dm6]	T	A	1.111e^-4	0.896	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
3L	1496704	3L_1496704_SNP [dm3] 3L_1496704_SNP [dm6]	C	T	1.118e^-4	0.896	UPSTREAM CG12084 DOWNSTREAM pUf68 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13312328	3L_13312328_SNP [dm3] 3L_13319228_SNP [dm6]	G	T	1.122e^-4	0.896	INTERGENIC
2R	19913987	2R_19913987_SNP [dm3] 2R_24026464_SNP [dm6]	T	G	1.128e^-4	0.896	UTR_5_PRIME PebIII UPSTREAM PebIII & 1 other DOWNSTREAM Adk2	TF binding site BDTNP1_TFBS_dl
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.140e^-4	0.896	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	1484029	2L_1484029_SNP [dm3] 2L_1484029_SNP [dm6]	A	G	1.141e^-4	0.896	INTERGENIC
3R	24442118	3R_24442118_SNP [dm3] 3R_28616396_SNP [dm6]	G	A	1.142e^-4	0.896	INTRON CG10011	TF binding site mE1_TFBS_cad
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	1.143e^-4	0.896	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9394100	3R_9394100_SNP [dm3] 3R_13568378_SNP [dm6]	T	C	1.148e^-4	0.896	INTERGENIC
3R	20119690	3R_20119690_SNP [dm3] 3R_24293968_SNP [dm6]	G	A	1.152e^-4	0.896	DOWNSTREAM CG6364 INTRON CG5715	TF binding site mE1_TFBS_sens
X	14194319	X_14194319_SNP [dm3] X_14300286_SNP [dm6]	A	T	1.155e^-4	0.896	INTERGENIC
3L	4236426	3L_4236426_SNP [dm3] 3L_4236426_SNP [dm6]	G	C	1.162e^-4	0.896	UPSTREAM ImpL2 INTERGENIC
2L	7761289	2L_7761289_SNP [dm3] 2L_7761289_SNP [dm6]	G	A	1.163e^-4	0.896	INTRON CG7196
2R	12523322	2R_12523322_SNP [dm3] 2R_16635817_SNP [dm6]	C	T	1.168e^-4	0.896	INTRON Alk	TF binding site BDTNP1_TFBS_dl
3L	650576	3L_650576_SNP [dm3] 3L_650576_SNP [dm6]	T	C	1.168e^-4	0.896	DOWNSTREAM CG3402 INTRON Gale	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	17658736	X_17658736_SNP [dm3] X_17764703_SNP [dm6]	G	A	1.174e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24391304	3R_24391304_DEL [dm3] 3R_28565582_DEL [dm6]	TT	T	1.177e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	15670878	3R_15670878_SNP [dm3] 3R_19845156_SNP [dm6]	C	A	1.187e^-4	0.896	INTERGENIC
2R	5554146	2R_5554146_SNP [dm3] 2R_9666641_SNP [dm6]	C	G	1.189e^-4	0.896	INTRON Mmp2
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	1.198e^-4	0.896	INTERGENIC
3R	4582146	3R_4582146_SNP [dm3] 3R_8756424_SNP [dm6]	G	A	1.203e^-4	0.896	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	1.206e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1498056	3L_1498056_SNP [dm3] 3L_1498056_SNP [dm6]	A	T	1.213e^-4	0.896	SYNONYMOUS_CODING pUf68 DOWNSTREAM scaRNA:MeU2-48	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23287258	3R_23287258_SNP [dm3] 3R_27461536_SNP [dm6]	G	C	1.214e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	1.215e^-4	0.896	INTRON GluClalpha
3R	5140710	3R_5140710_SNP [dm3] 3R_9314988_SNP [dm6]	A	G	1.217e^-4	0.896	INTRON CG8861
3L	13976145	3L_13976145_SNP [dm3] 3L_13983045_SNP [dm6]	T	A	1.217e^-4	0.896	INTRON CG17364
3R	4583137	3R_4583137_SNP [dm3] 3R_8757415_SNP [dm6]	G	C	1.220e^-4	0.896	INTRON CG11768 & 1 other
3R	23265569	3R_23265569_SNP [dm3] 3R_27439847_SNP [dm6]	C	G	1.222e^-4	0.896	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_dl
X	540297	X_540297_SNP [dm3] X_646264_SNP [dm6]	C	T	1.229e^-4	0.896	UTR_3_PRIME CG13367	TF binding site BDTNP1_TFBS_dl
2R	6057401	2R_6057401_SNP [dm3] 2R_10169896_SNP [dm6]	G	A	1.229e^-4	0.896	INTRON KCNQ
2R	12523457	2R_12523457_SNP [dm3] 2R_16635952_SNP [dm6]	A	G	1.229e^-4	0.896	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2L	5920802	2L_5920802_SNP [dm3] 2L_5920802_SNP [dm6]	T	G	1.235e^-4	0.896	SPLICE_SITE_REGION bchs INTRON bchs
3R	22697335	3R_22697335_SNP [dm3] 3R_26871613_SNP [dm6]	G	T	1.266e^-4	0.896	DOWNSTREAM Rb97D INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17701691	3R_17701691_SNP [dm3] 3R_21875969_SNP [dm6]	T	C	1.272e^-4	0.896	INTRON CG6656
2R	19489388	2R_19489388_SNP [dm3] 2R_23601865_SNP [dm6]	G	A	1.272e^-4	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20965420	3R_20965420_SNP [dm3] 3R_25139698_SNP [dm6]	A	G	1.273e^-4	0.896	UTR_3_PRIME danr
2R	10527378	2R_10527378_SNP [dm3] 2R_14639873_SNP [dm6]	A	G	1.278e^-4	0.896	DOWNSTREAM CG43236 & 2 others INTERGENIC	TF binding site mE1_TFBS_inv
3L	18277693	3L_18277693_SNP [dm3] 3L_18284593_SNP [dm6]	C	T	1.278e^-4	0.896	INTERGENIC
3R	4869526	3R_4869526_SNP [dm3] 3R_9043804_SNP [dm6]	A	G	1.284e^-4	0.896	DOWNSTREAM Rel INTRON Nmdmc
3L	9013735	3L_9013735_SNP [dm3] 3L_9020635_SNP [dm6]	G	A	1.294e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	13784163	2R_13784163_SNP [dm3] 2R_17896658_SNP [dm6]	C	T	1.294e^-4	0.896	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15172428	2L_15172428_SNP [dm3] 2L_15172428_SNP [dm6]	G	A	1.300e^-4	0.896	INTRON CG4168
3L	20986984	3L_20986984_SNP [dm3] 3L_20993884_SNP [dm6]	A	G	1.305e^-4	0.896	UTR_3_PRIME skd DOWNSTREAM CG12984 & 1 other
3R	15057384	3R_15057384_SNP [dm3] 3R_19231662_SNP [dm6]	T	C	1.305e^-4	0.896	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo
2L	7760389	2L_7760389_SNP [dm3] 2L_7760389_SNP [dm6]	A	T	1.306e^-4	0.896	INTRON CG7196
2L	4987394	2L_4987394_SNP [dm3] 2L_4987394_SNP [dm6]	C	T	1.310e^-4	0.896	INTRON CG34126
3L	10637811	3L_10637811_SNP [dm3] 3L_10644711_SNP [dm6]	C	A	1.312e^-4	0.896	DOWNSTREAM CG14153 INTRON CG32066
3R	15385373	3R_15385373_SNP [dm3] 3R_19559651_SNP [dm6]	G	A	1.317e^-4	0.896	INTRON Dys
2R	8541052	2R_8541052_SNP [dm3] 2R_12653547_SNP [dm6]	G	T	1.332e^-4	0.896	SYNONYMOUS_CODING ZnT49B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	518284	3L_518284_SNP [dm3] 3L_518284_SNP [dm6]	C	T	1.332e^-4	0.896	INTRON klar	TF binding site BDTNP1_TFBS_twi
3R	20232911	3R_20232911_SNP [dm3] 3R_24407189_SNP [dm6]	G	C	1.334e^-4	0.896	INTRON nAChRalpha1
3R	18084921	3R_18084921_SNP [dm3] 3R_22259199_SNP [dm6]	T	C	1.344e^-4	0.896	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11486122	2R_11486122_SNP [dm3] 2R_15598617_SNP [dm6]	A	G	1.352e^-4	0.896	INTERGENIC
3R	485558	3R_485558_SNP [dm3] 3R_4659836_SNP [dm6]	G	A	1.352e^-4	0.896	UTR_5_PRIME CG43427 DOWNSTREAM CR44156 INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	15167543	2L_15167543_SNP [dm3] 2L_15167543_SNP [dm6]	A	C	1.356e^-4	0.896	INTRON CG4168
3R	13497187	3R_13497187_SNP [dm3] 3R_17671465_SNP [dm6]	G	A	1.357e^-4	0.896	NON_SYNONYMOUS_CODING ald UPSTREAM CG7523
3R	21258907	3R_21258907_SNP [dm3] 3R_25433185_SNP [dm6]	A	T	1.358e^-4	0.896	INTRON Fur1
2L	1480033	2L_1480033_SNP [dm3] 2L_1480033_SNP [dm6]	C	A	1.363e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8476184	3R_8476184_INS [dm3] 3R_12650462_INS [dm6]	T	TGCTGCAGTAT...	1.371e^-4	0.896	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	13373458	3R_13373458_DEL [dm3] 3R_17547736_DEL [dm6]	GTTATTACT	C	1.379e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1498089	3L_1498089_SNP [dm3] 3L_1498089_SNP [dm6]	A	G	1.379e^-4	0.896	SYNONYMOUS_CODING pUf68 DOWNSTREAM scaRNA:MeU2-48	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11359527	2R_11359527_DEL [dm3] 2R_15472022_DEL [dm6]	AGA	A	1.400e^-4	0.896	DOWNSTREAM CG43729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	11359657	2R_11359657_SNP [dm3] 2R_15472152_SNP [dm6]	G	T	1.409e^-4	0.896	DOWNSTREAM CG8180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	10458110	2L_10458110_SNP [dm3] 2L_10458110_SNP [dm6]	G	A	1.412e^-4	0.896	UPSTREAM CG5322 INTRON LM408	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23247928	3R_23247928_SNP [dm3] 3R_27422206_SNP [dm6]	G	A	1.414e^-4	0.896	INTRON side
3L	1498282	3L_1498282_SNP [dm3] 3L_1498282_SNP [dm6]	T	A	1.421e^-4	0.896	DOWNSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20121225	3R_20121225_SNP [dm3] 3R_24295503_SNP [dm6]	G	A	1.424e^-4	0.896	UTR_5_PRIME crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9437218	2L_9437218_INS [dm3] 2L_9437218_INS [dm6]	C	CTACATAGTAAAAGAAATTC...	1.426e^-4	0.896	UTR_3_PRIME RpS28-like UPSTREAM numb DOWNSTREAM CG3769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	9437272	2L_9437272_SNP [dm3] 2L_9437272_SNP [dm6]	C	T	1.426e^-4	0.896	UPSTREAM numb DOWNSTREAM CG3769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	13373366	3R_13373366_SNP [dm3] 3R_17547644_SNP [dm6]	G	A	1.426e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23285707	3R_23285707_SNP [dm3] 3R_27459985_SNP [dm6]	T	C	1.427e^-4	0.896	INTERGENIC
3R	20958006	3R_20958006_SNP [dm3] 3R_25132284_SNP [dm6]	C	A	1.431e^-4	0.896	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3214333	2L_3214333_SNP [dm3] 2L_3214333_SNP [dm6]	T	C	1.437e^-4	0.896	INTERGENIC
3R	23282521	3R_23282521_SNP [dm3] 3R_27456799_SNP [dm6]	G	T	1.449e^-4	0.896	INTERGENIC
3R	12086200	3R_12086200_SNP [dm3] 3R_16260478_SNP [dm6]	C	A	1.452e^-4	0.896	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26095714	3R_26095714_SNP [dm3] 3R_30269992_SNP [dm6]	G	C	1.455e^-4	0.896	INTERGENIC
2L	10441713	2L_10441713_INS [dm3] 2L_10441713_INS [dm6]	T	TT	1.464e^-4	0.896	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
3R	5123359	3R_5123359_SNP [dm3] 3R_9297637_SNP [dm6]	C	T	1.465e^-4	0.896	INTRON CG8861
3L	7955005	3L_7955005_SNP [dm3] 3L_7961905_SNP [dm6]	G	A	1.473e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9449171	3R_9449171_SNP [dm3] 3R_13623449_SNP [dm6]	G	A	1.473e^-4	0.896	INTERGENIC
2L	3918251	2L_3918251_SNP [dm3] 2L_3918251_SNP [dm6]	A	G	1.487e^-4	0.896	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_sens
3R	17072787	3R_17072787_SNP [dm3] 3R_21247065_SNP [dm6]	A	C	1.489e^-4	0.896	UTR_5_PRIME ETHR
2R	4406506	2R_4406506_SNP [dm3] 2R_8519001_SNP [dm6]	G	A	1.493e^-4	0.896	INTRON mtt
3R	19061643	3R_19061643_SNP [dm3] 3R_23235921_SNP [dm6]	A	T	1.498e^-4	0.896	INTRON CG4467
2R	15303116	2R_15303116_SNP [dm3] 2R_19415611_SNP [dm6]	A	G	1.502e^-4	0.896	DOWNSTREAM tRNA:S4:56D & 2 others INTRON hts	TF binding site BDTNP1_TFBS_twi
3R	19059172	3R_19059172_SNP [dm3] 3R_23233450_SNP [dm6]	A	G	1.503e^-4	0.896	SPLICE_SITE_REGION CG4467 INTRON CG4467	TF binding site mE1_TFBS_cad
3R	19059181	3R_19059181_SNP [dm3] 3R_23233459_SNP [dm6]	T	G	1.503e^-4	0.896	INTRON CG4467	TF binding site mE1_TFBS_cad
3L	16284049	3L_16284049_SNP [dm3] 3L_16290949_SNP [dm6]	C	T	1.505e^-4	0.896	UTR_5_PRIME CG13045
X	20445773	X_20445773_INS [dm3] X_20574746_INS [dm6]	T	TTT	1.513e^-4	0.896	DOWNSTREAM CG42580 INTERGENIC
3L	9013827	3L_9013827_SNP [dm3] 3L_9020727_SNP [dm6]	C	T	1.516e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3982361	2L_3982361_SNP [dm3] 2L_3982361_SNP [dm6]	C	T	1.516e^-4	0.896	INTRON fred
3R	21259210	3R_21259210_SNP [dm3] 3R_25433488_SNP [dm6]	G	T	1.517e^-4	0.896	INTRON Fur1
2R	4406531	2R_4406531_SNP [dm3] 2R_8519026_SNP [dm6]	C	G	1.523e^-4	0.896	INTRON mtt
2R	6091783	2R_6091783_DEL [dm3] 2R_10204278_DEL [dm6]	TT	T	1.524e^-4	0.896	UTR_3_PRIME Hr46
2R	8539539	2R_8539539_INS [dm3] 2R_12652034_INS [dm6]	A	ACAA	1.525e^-4	0.896	UPSTREAM ZnT49B INTRON CG8778
3R	21256070	3R_21256070_SNP [dm3] 3R_25430348_SNP [dm6]	C	G	1.526e^-4	0.896	INTRON Fur1
3R	21440143	3R_21440143_SNP [dm3] 3R_25614421_SNP [dm6]	G	C	1.530e^-4	0.896	DOWNSTREAM CG5079 INTRON Npl4
3R	21298583	3R_21298583_SNP [dm3] 3R_25472861_SNP [dm6]	T	G	1.537e^-4	0.896	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26095641	3R_26095641_SNP [dm3] 3R_30269919_SNP [dm6]	G	A	1.540e^-4	0.896	INTERGENIC
3R	19615096	3R_19615096_SNP [dm3] 3R_23789374_SNP [dm6]	G	A	1.548e^-4	0.896	INTRON mbc
2L	10789753	2L_10789753_SNP [dm3] 2L_10789753_SNP [dm6]	A	C	1.551e^-4	0.896	UPSTREAM CG31870 INTRON CG31869
X	21055800	X_21055800_SNP [dm3] X_21184773_SNP [dm6]	T	C	1.555e^-4	0.896	INTERGENIC
3L	12198242	3L_12198242_SNP [dm3] 3L_12205142_SNP [dm6]	C	T	1.556e^-4	0.896	NON_SYNONYMOUS_CODING CG5626
2R	17600364	2R_17600364_INS [dm3] 2R_21712859_INS [dm6]	A	ACATA	1.561e^-4	0.896	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	24918414	3R_24918414_SNP [dm3] 3R_29092692_SNP [dm6]	G	A	1.574e^-4	0.896	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7003580	2L_7003580_SNP [dm3] 2L_7003580_SNP [dm6]	T	C	1.575e^-4	0.896	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19062723	3R_19062723_SNP [dm3] 3R_23237001_SNP [dm6]	C	T	1.575e^-4	0.896	INTRON CG4467
3L	12198823	3L_12198823_SNP [dm3] 3L_12205723_SNP [dm6]	T	G	1.577e^-4	0.896	DOWNSTREAM app INTRON CG5626
3R	9390470	3R_9390470_SNP [dm3] 3R_13564748_SNP [dm6]	C	A	1.578e^-4	0.896	INTERGENIC
3R	23285692	3R_23285692_SNP [dm3] 3R_27459970_SNP [dm6]	A	G	1.581e^-4	0.896	INTERGENIC
2R	11302130	2R_11302130_SNP [dm3] 2R_15414625_SNP [dm6]	A	T	1.588e^-4	0.896	INTRON CG43729
X	519277	X_519277_DEL [dm3] X_625244_DEL [dm6]	TGC	T	1.598e^-4	0.896	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18694107	2R_18694107_SNP [dm3] 2R_22806602_SNP [dm6]	T	G	1.601e^-4	0.896	UPSTREAM CycB INTRON CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19489485	2R_19489485_SNP [dm3] 2R_23601962_SNP [dm6]	C	T	1.605e^-4	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19489489	2R_19489489_SNP [dm3] 2R_23601966_SNP [dm6]	C	T	1.605e^-4	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	4847931	3R_4847931_SNP [dm3] 3R_9022209_SNP [dm6]	G	C	1.613e^-4	0.896	SYNONYMOUS_CODING neur EXON CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13994250	3R_13994250_SNP [dm3] 3R_18168528_SNP [dm6]	T	A	1.614e^-4	0.896	UTR_5_PRIME PP2A-B' UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21055464	X_21055464_SNP [dm3] X_21184437_SNP [dm6]	A	G	1.614e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9455787	2R_9455787_SNP [dm3] 2R_13568282_SNP [dm6]	C	A	1.615e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	6374656	2L_6374656_SNP [dm3] 2L_6374656_SNP [dm6]	C	A	1.615e^-4	0.896	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	427676	3R_427676_SNP [dm3] 3R_4601954_SNP [dm6]	A	C	1.623e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13373352	3R_13373352_INS [dm3] 3R_17547630_INS [dm6]	A	AA	1.631e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25630964	3R_25630964_SNP [dm3] 3R_29805242_SNP [dm6]	G	A	1.633e^-4	0.896	SYNONYMOUS_CODING ncd DOWNSTREAM CG7789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8539542	2R_8539542_INS [dm3] 2R_12652037_INS [dm6]	A	ATAA	1.642e^-4	0.896	UPSTREAM ZnT49B INTRON CG8778
3R	17069109	3R_17069109_SNP [dm3] 3R_21243387_SNP [dm6]	T	A	1.642e^-4	0.896	INTRON CG5892	TF binding site mE1_TFBS_inv
3R	19061006	3R_19061006_SNP [dm3] 3R_23235284_SNP [dm6]	A	T	1.649e^-4	0.896	INTRON CG4467
2L	7996624	2L_7996624_SNP [dm3] 2L_7996624_SNP [dm6]	G	C	1.651e^-4	0.896	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.653e^-4	0.896	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	9016124	3L_9016124_SNP [dm3] 3L_9023024_SNP [dm6]	G	A	1.668e^-4	0.896	INTERGENIC
3R	17069088	3R_17069088_SNP [dm3] 3R_21243366_SNP [dm6]	A	T	1.670e^-4	0.896	INTRON CG5892	TF binding site mE1_TFBS_inv
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.687e^-4	0.896	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
X	6649543	X_6649543_SNP [dm3] X_6755510_SNP [dm6]	T	G	1.688e^-4	0.896	UTR_3_PRIME CG14439 UPSTREAM CG14438
2L	7759399	2L_7759399_SNP [dm3] 2L_7759399_SNP [dm6]	C	T	1.696e^-4	0.896	INTRON CG7196
2L	12395279	2L_12395279_SNP [dm3] 2L_12395279_SNP [dm6]	C	A	1.696e^-4	0.896	INTRON bru-2
2R	3022921	2R_3022921_SNP [dm3] 2R_7135416_SNP [dm6]	T	C	1.707e^-4	0.896	DOWNSTREAM CR44443 INTERGENIC
2R	4225219	2R_4225219_SNP [dm3] 2R_8337714_SNP [dm6]	G	A	1.717e^-4	0.896	INTRON pdm3
2L	8452250	2L_8452250_SNP [dm3] 2L_8452250_SNP [dm6]	A	T	1.725e^-4	0.896	UPSTREAM fu12 INTRON fu12
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	1.734e^-4	0.896	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
X	14964412	X_14964412_DEL [dm3] X_15070379_DEL [dm6]	AAAATCTAAGTTATTTTGAA...	A	1.735e^-4	0.896	UTR_3_PRIME Lsd-2
3R	23681909	3R_23681909_SNP [dm3] 3R_27856187_SNP [dm6]	G	T	1.736e^-4	0.896	INTRON CG34353	TF binding site mE1_TFBS_inv
X	8889389	X_8889389_SNP [dm3] X_8995356_SNP [dm6]	G	A	1.738e^-4	0.896	INTRON rdgA & 1 other
X	8889392	X_8889392_SNP [dm3] X_8995359_SNP [dm6]	C	G	1.738e^-4	0.896	INTRON rdgA & 1 other
2R	2455557	2R_2455557_SNP [dm3] 2R_6568052_SNP [dm6]	T	G	1.746e^-4	0.896	INTRON jing
3R	516675	3R_516675_SNP [dm3] 3R_4690953_SNP [dm6]	A	T	1.746e^-4	0.896	UPSTREAM CG33927 INTRON CG43427	transposable element FlyBase
2R	6057402	2R_6057402_SNP [dm3] 2R_10169897_SNP [dm6]	C	T	1.758e^-4	0.896	INTRON KCNQ
X	519258	X_519258_SNP [dm3] X_625225_SNP [dm6]	T	C	1.768e^-4	0.896	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9456416	2R_9456416_SNP [dm3] 2R_13568911_SNP [dm6]	T	G	1.769e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
3L	18905891	3L_18905891_SNP [dm3] 3L_18912791_SNP [dm6]	G	A	1.771e^-4	0.896	DOWNSTREAM CG14077 INTRON CG14077
3R	14458024	3R_14458024_SNP [dm3] 3R_18632302_SNP [dm6]	C	A	1.773e^-4	0.896	INTRON qin & 1 other
2L	16431080	2L_16431080_SNP [dm3] 2L_16431080_SNP [dm6]	T	A	1.773e^-4	0.896	INTRON CG5888
2R	14438417	2R_14438417_SNP [dm3] 2R_18550912_SNP [dm6]	G	T	1.773e^-4	0.896	INTERGENIC
3R	24508657	3R_24508657_SNP [dm3] 3R_28682935_SNP [dm6]	G	A	1.774e^-4	0.896	INTRON CG9990	TF binding site BDTNP1_TFBS_z
3R	21299916	3R_21299916_SNP [dm3] 3R_25474194_SNP [dm6]	A	G	1.777e^-4	0.896	NON_SYNONYMOUS_CODING Vps33B
2R	8693257	2R_8693257_SNP [dm3] 2R_12805752_SNP [dm6]	G	A	1.778e^-4	0.896	UPSTREAM CG17580 INTERGENIC
3L	12199324	3L_12199324_SNP [dm3] 3L_12206224_SNP [dm6]	C	A	1.784e^-4	0.896	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.789e^-4	0.896	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	12080479	2L_12080479_SNP [dm3] 2L_12080479_SNP [dm6]	T	C	1.789e^-4	0.896	DOWNSTREAM CR44590 EXON CR44591	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	434224	3R_434224_SNP [dm3] 3R_4608502_SNP [dm6]	T	C	1.792e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5425049	2L_5425049_SNP [dm3] 2L_5425049_SNP [dm6]	G	C	1.792e^-4	0.896	INTERGENIC
3L	13182628	3L_13182628_SNP [dm3] 3L_13189528_SNP [dm6]	G	T	1.794e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23287227	3R_23287227_INS [dm3] 3R_27461505_INS [dm6]	C	CCACC	1.795e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12160224	2L_12160224_INS [dm3] 2L_12160224_INS [dm6]	A	AGGATTTTA	1.807e^-4	0.896	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25217437	3R_25217437_DEL [dm3] 3R_29391715_DEL [dm6]	CC	C	1.814e^-4	0.896	INTRON Ptp99A
3R	26907722	3R_26907722_SNP [dm3] 3R_31082000_SNP [dm6]	A	G	1.822e^-4	0.896	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19063757	3R_19063757_SNP [dm3] 3R_23238035_SNP [dm6]	T	A	1.826e^-4	0.896	INTRON CG4467
X	580442	X_580442_SNP [dm3] X_686409_SNP [dm6]	A	C	1.838e^-4	0.896	UPSTREAM sdk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	8537987	2R_8537987_SNP [dm3] 2R_12650482_SNP [dm6]	G	C	1.858e^-4	0.896	DOWNSTREAM CG8778 INTERGENIC
X	19306845	X_19306845_SNP [dm3] X_19412812_SNP [dm6]	C	G	1.861e^-4	0.896	INTRON kek5	TF binding site mE1_TFBS_HSA
3L	11671557	3L_11671557_SNP [dm3] 3L_11678457_SNP [dm6]	G	C	1.865e^-4	0.896	INTRON CG32085
3R	23285693	3R_23285693_SNP [dm3] 3R_27459971_SNP [dm6]	C	T	1.866e^-4	0.896	INTERGENIC
2L	5235112	2L_5235112_SNP [dm3] 2L_5235112_SNP [dm6]	C	T	1.870e^-4	0.896	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3982338	2L_3982338_SNP [dm3] 2L_3982338_SNP [dm6]	C	T	1.872e^-4	0.896	INTRON fred
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	1.878e^-4	0.896	INTERGENIC
2R	16947982	2R_16947982_SNP [dm3] 2R_21060477_SNP [dm6]	C	G	1.880e^-4	0.896	UTR_5_PRIME CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19873022	3L_19873022_SNP [dm3] 3L_19879922_SNP [dm6]	C	T	1.888e^-4	0.896	SYNONYMOUS_CODING CG8334	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12198537	3L_12198537_SNP [dm3] 3L_12205437_SNP [dm6]	T	C	1.896e^-4	0.896	SYNONYMOUS_CODING CG5626 DOWNSTREAM app
2L	8451383	2L_8451383_SNP [dm3] 2L_8451383_SNP [dm6]	A	C	1.901e^-4	0.896	UPSTREAM fu12 INTRON fu12
2R	4139904	2R_4139904_SNP [dm3] 2R_8252399_SNP [dm6]	A	C	1.903e^-4	0.896	INTERGENIC
3R	15668348	3R_15668348_SNP [dm3] 3R_19842626_SNP [dm6]	T	C	1.904e^-4	0.896	DOWNSTREAM CG31459 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10551530	2L_10551530_SNP [dm3] 2L_10551530_SNP [dm6]	A	G	1.909e^-4	0.896	INTRON Trim9	TF binding site mE1_TFBS_cad
3R	3964184	3R_3964184_SNP [dm3] 3R_8138462_SNP [dm6]	T	A	1.910e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21055892	X_21055892_SNP [dm3] X_21184865_SNP [dm6]	A	C	1.910e^-4	0.896	INTERGENIC
2L	11589280	2L_11589280_SNP [dm3] 2L_11589280_SNP [dm6]	A	T	1.914e^-4	0.896	DOWNSTREAM CR44496 INTRON kek2
2L	2669879	2L_2669879_SNP [dm3] 2L_2669879_SNP [dm6]	C	G	1.915e^-4	0.896	SYNONYMOUS_CODING Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4026537	3L_4026537_SNP [dm3] 3L_4026537_SNP [dm6]	C	T	1.923e^-4	0.896	UPSTREAM Gr64a & 1 other INTERGENIC
3R	13373483	3R_13373483_SNP [dm3] 3R_17547761_SNP [dm6]	A	G	1.932e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24442584	3R_24442584_SNP [dm3] 3R_28616862_SNP [dm6]	G	A	1.937e^-4	0.896	INTRON CG10011
2L	1438542	2L_1438542_SNP [dm3] 2L_1438542_SNP [dm6]	C	T	1.943e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13182626	3L_13182626_SNP [dm3] 3L_13189526_SNP [dm6]	G	T	1.953e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9910800	2L_9910800_SNP [dm3] 2L_9910800_SNP [dm6]	G	A	1.963e^-4	0.896	INTRON Etl1	TF binding site mE1_TFBS_cad
2R	19489365	2R_19489365_SNP [dm3] 2R_23601842_SNP [dm6]	T	G	1.963e^-4	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8020114	3R_8020114_SNP [dm3] 3R_12194392_SNP [dm6]	C	G	1.964e^-4	0.896	SYNONYMOUS_CODING CG4810 UPSTREAM CG43450
3L	16284133	3L_16284133_SNP [dm3] 3L_16291033_SNP [dm6]	G	A	1.980e^-4	0.896	UPSTREAM CG13045 INTERGENIC
3L	1081157	3L_1081157_SNP [dm3] 3L_1081157_SNP [dm6]	C	G	1.981e^-4	0.896	INTRON bab1
2L	18758929	2L_18758929_DEL [dm3] 2L_18758929_DEL [dm6]	TCTTTGCCATAAGTCAAAGT...	T	1.989e^-4	0.896	INTERGENIC
3R	23730811	3R_23730811_SNP [dm3] 3R_27905089_SNP [dm6]	T	C	1.992e^-4	0.896	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6649522	X_6649522_SNP [dm3] X_6755489_SNP [dm6]	T	A	2.002e^-4	0.896	UTR_3_PRIME CG14439 UPSTREAM CG14438
X	6649524	X_6649524_SNP [dm3] X_6755491_SNP [dm6]	A	G	2.002e^-4	0.896	UTR_3_PRIME CG14439 UPSTREAM CG14438
X	6647961	X_6647961_SNP [dm3] X_6753928_SNP [dm6]	C	A	2.010e^-4	0.896	SYNONYMOUS_CODING CG14439
3L	4717501	3L_4717501_SNP [dm3] 3L_4717501_SNP [dm6]	A	C	2.012e^-4	0.896	INTRON RhoGEF64C
3L	8931792	3L_8931792_SNP [dm3] 3L_8938692_SNP [dm6]	C	T	2.016e^-4	0.896	UTR_3_PRIME orb2 DOWNSTREAM orb2 INTRON CG43783	TF binding site mE1_TFBS_kn
3L	4717498	3L_4717498_SNP [dm3] 3L_4717498_SNP [dm6]	T	C	2.016e^-4	0.896	INTRON RhoGEF64C
3L	12197277	3L_12197277_SNP [dm3] 3L_12204177_SNP [dm6]	A	T	2.022e^-4	0.896	UTR_3_PRIME CG5626 UPSTREAM Adk1	TF binding site mE1_TFBS_HSA
2L	1238393	2L_1238393_SNP [dm3] 2L_1238393_SNP [dm6]	G	C	2.024e^-4	0.896	INTERGENIC
2R	12077781	2R_12077781_SNP [dm3] 2R_16190276_SNP [dm6]	A	G	2.026e^-4	0.896	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12197254	3L_12197254_SNP [dm3] 3L_12204154_SNP [dm6]	G	T	2.029e^-4	0.896	UTR_3_PRIME CG5626 UPSTREAM Adk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24958740	3R_24958740_SNP [dm3] 3R_29133018_SNP [dm6]	C	A	2.045e^-4	0.896	INTRON Vha100-1
X	21055941	X_21055941_SNP [dm3] X_21184914_SNP [dm6]	C	T	2.045e^-4	0.896	INTERGENIC
X	20788849	X_20788849_SNP [dm3] X_20917822_SNP [dm6]	A	C	2.051e^-4	0.896	INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23474532	3R_23474532_INS [dm3] 3R_27648810_INS [dm6]	G	GTTG	2.051e^-4	0.896	CODON_INSERTION tau INTRON tau
3R	13472202	3R_13472202_SNP [dm3] 3R_17646480_SNP [dm6]	A	G	2.054e^-4	0.896	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	2.058e^-4	0.896	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3R	13373497	3R_13373497_MNP [dm3] 3R_17547775_MNP [dm6]	ATA	TAC	2.074e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9102964	3L_9102964_SNP [dm3] 3L_9109864_SNP [dm6]	G	A	2.085e^-4	0.896	INTRON bol
2R	16872449	2R_16872449_SNP [dm3] 2R_20984944_SNP [dm6]	C	T	2.088e^-4	0.896	SYNONYMOUS_CODING CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6057522	2R_6057522_SNP [dm3] 2R_10170017_SNP [dm6]	A	T	2.096e^-4	0.896	INTRON KCNQ
3R	12030728	3R_12030728_INS [dm3] 3R_16205006_INS [dm6]	T	TTATT	2.103e^-4	0.896	SPLICE_SITE_REGION mtSSB DOWNSTREAM CG31287 INTRON mtSSB	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	1496818	3L_1496818_SNP [dm3] 3L_1496818_SNP [dm6]	A	T	2.109e^-4	0.896	UPSTREAM CG12084 DOWNSTREAM pUf68 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12385892	2L_12385892_SNP [dm3] 2L_12385892_SNP [dm6]	T	C	2.116e^-4	0.896	INTRON bru-2
X	18286749	X_18286749_SNP [dm3] X_18392716_SNP [dm6]	C	T	2.118e^-4	0.896	SYNONYMOUS_CODING CG32549
2L	12366342	2L_12366342_SNP [dm3] 2L_12366342_SNP [dm6]	G	T	2.119e^-4	0.896	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	21055390	X_21055390_SNP [dm3] X_21184363_SNP [dm6]	C	G	2.119e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	5980623	2R_5980623_SNP [dm3] 2R_10093118_SNP [dm6]	C	T	2.123e^-4	0.896	INTRON CG2269	TF binding site mE1_TFBS_cad
2L	4709120	2L_4709120_SNP [dm3] 2L_4709120_SNP [dm6]	C	T	2.135e^-4	0.896	INTRON CG34351
3L	1496002	3L_1496002_SNP [dm3] 3L_1496002_SNP [dm6]	T	G	2.140e^-4	0.896	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11853196	2L_11853196_SNP [dm3] 2L_11853196_SNP [dm6]	A	C	2.145e^-4	0.896	UPSTREAM CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
2R	15175015	2R_15175015_SNP [dm3] 2R_19287510_SNP [dm6]	C	A	2.149e^-4	0.896	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13784124	2R_13784124_SNP [dm3] 2R_17896619_SNP [dm6]	C	A	2.150e^-4	0.896	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	583569	X_583569_SNP [dm3] X_689536_SNP [dm6]	C	T	2.153e^-4	0.896	INTRON sdk	TF binding site BDTNP1_TFBS_da
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	2.153e^-4	0.896	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	2.153e^-4	0.896	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
X	14915032	X_14915032_SNP [dm3] X_15020999_SNP [dm6]	G	A	2.153e^-4	0.896	INTRON hiw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	13373503	3R_13373503_SNP [dm3] 3R_17547781_SNP [dm6]	C	T	2.154e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9455895	2R_9455895_SNP [dm3] 2R_13568390_SNP [dm6]	A	G	2.161e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
X	20848495	X_20848495_SNP [dm3] X_20977468_SNP [dm6]	G	A	2.161e^-4	0.896	UPSTREAM CG44426 INTERGENIC
3L	12198400	3L_12198400_SNP [dm3] 3L_12205300_SNP [dm6]	G	T	2.170e^-4	0.896	NON_SYNONYMOUS_CODING CG5626 DOWNSTREAM app
2L	2310018	2L_2310018_SNP [dm3] 2L_2310018_SNP [dm6]	A	T	2.170e^-4	0.896	INTRON CG9967
3L	12197246	3L_12197246_SNP [dm3] 3L_12204146_SNP [dm6]	A	G	2.173e^-4	0.896	UTR_3_PRIME CG5626 UPSTREAM Adk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13568362	3R_13568362_SNP [dm3] 3R_17742640_SNP [dm6]	G	A	2.175e^-4	0.896	INTRON TyrRII
3R	7664704	3R_7664704_SNP [dm3] 3R_11838982_SNP [dm6]	C	T	2.180e^-4	0.896	INTRON CG6959
3L	12198276	3L_12198276_SNP [dm3] 3L_12205176_SNP [dm6]	A	G	2.181e^-4	0.896	SYNONYMOUS_CODING CG5626
3R	468286	3R_468286_SNP [dm3] 3R_4642564_SNP [dm6]	C	T	2.187e^-4	0.896	SPLICE_SITE_REGION MED31 UPSTREAM CG9775 INTRON MED31 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5043346	3L_5043346_SNP [dm3] 3L_5043346_SNP [dm6]	T	C	2.192e^-4	0.896	INTRON Con
3R	24958626	3R_24958626_SNP [dm3] 3R_29132904_SNP [dm6]	A	T	2.194e^-4	0.896	INTRON Vha100-1
2R	7058671	2R_7058671_SNP [dm3] 2R_11171166_SNP [dm6]	C	A	2.195e^-4	0.896	INTRON shn & 1 other
3R	8017976	3R_8017976_SNP [dm3] 3R_12192254_SNP [dm6]	A	G	2.211e^-4	0.896	DOWNSTREAM CG4810 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12197362	3L_12197362_SNP [dm3] 3L_12204262_SNP [dm6]	T	A	2.223e^-4	0.896	UTR_3_PRIME CG5626 UPSTREAM Adk1
3R	25746298	3R_25746298_SNP [dm3] 3R_29920576_SNP [dm6]	G	A	2.232e^-4	0.896	UPSTREAM trp INTERGENIC
2R	9456623	2R_9456623_SNP [dm3] 2R_13569118_SNP [dm6]	A	C	2.236e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
X	17658721	X_17658721_SNP [dm3] X_17764688_SNP [dm6]	G	C	2.242e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3964169	3R_3964169_SNP [dm3] 3R_8138447_SNP [dm6]	T	A	2.242e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25750821	3R_25750821_SNP [dm3] 3R_29925099_SNP [dm6]	C	T	2.260e^-4	0.896	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
3R	17773519	3R_17773519_DEL [dm3] 3R_21947797_DEL [dm6]	TT	T	2.260e^-4	0.896	INTERGENIC
3L	17324331	3L_17324331_SNP [dm3] 3L_17331231_SNP [dm6]	G	A	2.260e^-4	0.896	INTERGENIC
2R	7540678	2R_7540678_SNP [dm3] 2R_11653173_SNP [dm6]	T	A	2.261e^-4	0.896	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2L	9437283	2L_9437283_SNP [dm3] 2L_9437283_SNP [dm6]	T	G	2.267e^-4	0.896	UPSTREAM numb DOWNSTREAM CG3769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	568409	X_568409_SNP [dm3] X_674376_SNP [dm6]	C	A	2.267e^-4	0.896	INTERGENIC
2L	18938158	2L_18938158_SNP [dm3] 2L_18938158_SNP [dm6]	A	G	2.268e^-4	0.896	INTRON ssp3
3R	431644	3R_431644_SNP [dm3] 3R_4605922_SNP [dm6]	G	A	2.276e^-4	0.896	INTERGENIC	transposable element FlyBase
3R	13373494	3R_13373494_SNP [dm3] 3R_17547772_SNP [dm6]	C	T	2.280e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1498002	3L_1498002_SNP [dm3] 3L_1498002_SNP [dm6]	G	C	2.281e^-4	0.896	SYNONYMOUS_CODING pUf68 DOWNSTREAM scaRNA:MeU2-48	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6649598	X_6649598_DEL [dm3] X_6755565_DEL [dm6]	ATCAGATA	A	2.285e^-4	0.896	UTR_3_PRIME CG14439 UPSTREAM CG14438
2L	2309981	2L_2309981_SNP [dm3] 2L_2309981_SNP [dm6]	G	T	2.286e^-4	0.896	INTRON CG9967
3L	18188209	3L_18188209_SNP [dm3] 3L_18195109_SNP [dm6]	G	C	2.294e^-4	0.896	INTERGENIC
X	559654	X_559654_SNP [dm3] X_665621_SNP [dm6]	T	A	2.295e^-4	0.896	INTERGENIC	transposable element FlyBase
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	2.298e^-4	0.896	INTERGENIC
3L	8427998	3L_8427998_SNP [dm3] 3L_8434898_SNP [dm6]	A	G	2.300e^-4	0.896	SYNONYMOUS_CODING Unr
3R	18461125	3R_18461125_SNP [dm3] 3R_22635403_SNP [dm6]	T	G	2.301e^-4	0.896	INTRON loco	TF binding site BDTNP1_TFBS_da
3R	23285708	3R_23285708_SNP [dm3] 3R_27459986_SNP [dm6]	A	C	2.311e^-4	0.896	INTERGENIC
3R	402282	3R_402282_SNP [dm3] 3R_4576560_SNP [dm6]	C	T	2.315e^-4	0.896	INTERGENIC	transposable element FlyBase
3R	24400373	3R_24400373_SNP [dm3] 3R_28574651_SNP [dm6]	A	C	2.319e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18581297	2L_18581297_SNP [dm3] 2L_18581297_SNP [dm6]	C	G	2.333e^-4	0.896	INTRON Pde11
2R	17600322	2R_17600322_DEL [dm3] 2R_21712817_DEL [dm6]	CAAAATT	A	2.339e^-4	0.896	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12105168	2R_12105168_DEL [dm3] 2R_16217663_DEL [dm6]	AA	A	2.351e^-4	0.896	INTRON mrj	TF binding site BDTNP1_TFBS_da
X	582853	X_582853_SNP [dm3] X_688820_SNP [dm6]	T	C	2.355e^-4	0.896	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13373508	3R_13373508_DEL [dm3] 3R_17547786_DEL [dm6]	AAGAAGAA	A	2.360e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13373517	3R_13373517_SNP [dm3] 3R_17547795_SNP [dm6]	G	T	2.360e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13373523	3R_13373523_SNP [dm3] 3R_17547801_SNP [dm6]	C	T	2.360e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13504041	3R_13504041_DEL [dm3] 3R_17678319_DEL [dm6]	GG	G	2.370e^-4	0.896	INTRON alt	TF binding site mE1_TFBS_inv
X	20416730	X_20416730_SNP [dm3] X_20545703_SNP [dm6]	C	A	2.373e^-4	0.896	INTRON RunxB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11359496	2R_11359496_SNP [dm3] 2R_15471991_SNP [dm6]	A	G	2.377e^-4	0.896	DOWNSTREAM CG43729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	21299897	3R_21299897_SNP [dm3] 3R_25474175_SNP [dm6]	G	A	2.380e^-4	0.896	NON_SYNONYMOUS_CODING Vps33B
3L	12870782	3L_12870782_INS [dm3] 3L_12877682_INS [dm6]	T	TATT	2.381e^-4	0.896	INTERGENIC
3R	24951490	3R_24951490_SNP [dm3] 3R_29125768_SNP [dm6]	G	A	2.385e^-4	0.896	INTRON CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20958304	3R_20958304_SNP [dm3] 3R_25132582_SNP [dm6]	G	A	2.386e^-4	0.896	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8538158	2R_8538158_SNP [dm3] 2R_12650653_SNP [dm6]	T	G	2.391e^-4	0.896	DOWNSTREAM CG8778 INTERGENIC
3R	458116	3R_458116_SNP [dm3] 3R_4632394_SNP [dm6]	A	T	2.393e^-4	0.896	UTR_3_PRIME 5-HT2A INTRON 5-HT2A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	466379	3R_466379_SNP [dm3] 3R_4640657_SNP [dm6]	A	C	2.393e^-4	0.896	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	466443	3R_466443_SNP [dm3] 3R_4640721_SNP [dm6]	C	T	2.393e^-4	0.896	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24177823	3R_24177823_SNP [dm3] 3R_28352101_SNP [dm6]	A	C	2.401e^-4	0.896	UPSTREAM Or98b INTERGENIC
2L	1784637	2L_1784637_SNP [dm3] 2L_1784637_SNP [dm6]	A	G	2.407e^-4	0.896	SYNONYMOUS_CODING Gr22e	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8625377	2L_8625377_SNP [dm3] 2L_8625377_SNP [dm6]	G	A	2.409e^-4	0.896	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12523324	2R_12523324_SNP [dm3] 2R_16635819_SNP [dm6]	A	C	2.411e^-4	0.896	INTRON Alk	TF binding site BDTNP1_TFBS_dl
X	14915038	X_14915038_SNP [dm3] X_15021005_SNP [dm6]	G	A	2.416e^-4	0.896	INTRON hiw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	5923925	3L_5923925_SNP [dm3] 3L_5930825_SNP [dm6]	C	T	2.425e^-4	0.896	SYNONYMOUS_CODING Rcc1 DOWNSTREAM Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1480027	2L_1480027_SNP [dm3] 2L_1480027_SNP [dm6]	T	A	2.427e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25689626	3R_25689626_SNP [dm3] 3R_29863904_SNP [dm6]	A	G	2.428e^-4	0.896	UTR_3_PRIME Zip99C DOWNSTREAM snoRNA:Me28S-A2564 & 1 other
2R	19489503	2R_19489503_SNP [dm3] 2R_23601980_SNP [dm6]	C	A	2.433e^-4	0.896	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3877326	2L_3877326_SNP [dm3] 2L_3877326_SNP [dm6]	G	A	2.458e^-4	0.896	INTRON capu
2R	9198165	2R_9198165_SNP [dm3] 2R_13310660_SNP [dm6]	A	C	2.458e^-4	0.896	INTERGENIC
3R	4516401	3R_4516401_SNP [dm3] 3R_8690679_SNP [dm6]	A	T	2.470e^-4	0.896	DOWNSTREAM hb INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25871368	3R_25871368_SNP [dm3] 3R_30045646_SNP [dm6]	A	T	2.471e^-4	0.896	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	3619497	2L_3619497_SNP [dm3] 2L_3619497_SNP [dm6]	C	A	2.475e^-4	0.896	NON_SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1498980	3L_1498980_SNP [dm3] 3L_1498980_SNP [dm6]	G	C	2.492e^-4	0.896	INTRON pUf68 EXON scaRNA:MeU2-48	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1484015	2L_1484015_DEL [dm3] 2L_1484015_DEL [dm6]	AA	A	2.492e^-4	0.896	INTERGENIC
2L	1238948	2L_1238948_SNP [dm3] 2L_1238948_SNP [dm6]	A	C	2.493e^-4	0.896	INTERGENIC
2L	3971446	2L_3971446_SNP [dm3] 2L_3971446_SNP [dm6]	T	A	2.494e^-4	0.896	INTRON fred
2L	3971468	2L_3971468_DEL [dm3] 2L_3971468_DEL [dm6]	GCTCAAG	G	2.494e^-4	0.896	INTRON fred
3R	13330672	3R_13330672_SNP [dm3] 3R_17504950_SNP [dm6]	G	T	2.497e^-4	0.896	INTRON Dscam3
2R	11359515	2R_11359515_SNP [dm3] 2R_15472010_SNP [dm6]	T	A	2.501e^-4	0.896	DOWNSTREAM CG43729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	11359497	2R_11359497_SNP [dm3] 2R_15471992_SNP [dm6]	G	T	2.504e^-4	0.896	DOWNSTREAM CG43729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	16080311	3R_16080311_SNP [dm3] 3R_20254589_SNP [dm6]	T	A	2.508e^-4	0.896	INTRON cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	579601	X_579601_SNP [dm3] X_685568_SNP [dm6]	G	A	2.517e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24196343	3R_24196343_SNP [dm3] 3R_28370621_SNP [dm6]	C	A	2.521e^-4	0.896	INTERGENIC
3L	16348432	3L_16348432_SNP [dm3] 3L_16355332_SNP [dm6]	C	T	2.532e^-4	0.896	SYNONYMOUS_CODING CG45057
2R	12523374	2R_12523374_SNP [dm3] 2R_16635869_SNP [dm6]	G	A	2.545e^-4	0.896	INTRON Alk
3R	14707754	3R_14707754_SNP [dm3] 3R_18882032_SNP [dm6]	G	C	2.553e^-4	0.896	INTERGENIC
2R	15564064	2R_15564064_SNP [dm3] 2R_19676559_SNP [dm6]	A	G	2.555e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
X	21055790	X_21055790_DEL [dm3] X_21184763_DEL [dm6]	TT	T	2.561e^-4	0.896	INTERGENIC
3R	22576804	3R_22576804_SNP [dm3] 3R_26751082_SNP [dm6]	A	G	2.561e^-4	0.896	INTERGENIC
3R	19039993	3R_19039993_SNP [dm3] 3R_23214271_SNP [dm6]	G	T	2.562e^-4	0.896	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	12017041	3R_12017041_SNP [dm3] 3R_16191319_SNP [dm6]	T	C	2.563e^-4	0.896	INTRON sra
X	21064332	X_21064332_SNP [dm3] X_21193305_SNP [dm6]	A	G	2.566e^-4	0.896	UTR_5_PRIME CG14579
2L	12385903	2L_12385903_SNP [dm3] 2L_12385903_SNP [dm6]	G	A	2.571e^-4	0.896	INTRON bru-2
3R	417590	3R_417590_SNP [dm3] 3R_4591868_SNP [dm6]	C	T	2.575e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12095112	3L_12095112_SNP [dm3] 3L_12102012_SNP [dm6]	A	C	2.581e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	7910157	3R_7910157_DEL [dm3] 3R_12084435_DEL [dm6]	TAAGATAGGCAT...	CTATAGGGC	2.589e^-4	0.896	INTRON CG14741
2R	9455898	2R_9455898_SNP [dm3] 2R_13568393_SNP [dm6]	C	A	2.597e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	1075783	3L_1075783_SNP [dm3] 3L_1075783_SNP [dm6]	C	G	2.604e^-4	0.896	INTRON bab1
2L	3971479	2L_3971479_SNP [dm3] 2L_3971479_SNP [dm6]	A	G	2.613e^-4	0.896	INTRON fred
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	2.615e^-4	0.896	INTRON qin & 1 other
3R	5125692	3R_5125692_SNP [dm3] 3R_9299970_SNP [dm6]	G	C	2.617e^-4	0.896	INTRON CG8861
X	21055955	X_21055955_SNP [dm3] X_21184928_SNP [dm6]	A	C	2.623e^-4	0.896	INTERGENIC
X	564091	X_564091_SNP [dm3] X_670058_SNP [dm6]	G	C	2.633e^-4	0.896	INTERGENIC
3R	466323	3R_466323_SNP [dm3] 3R_4640601_SNP [dm6]	T	A	2.634e^-4	0.896	INTRON CG9775	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12077964	2R_12077964_SNP [dm3] 2R_16190459_SNP [dm6]	G	T	2.635e^-4	0.896	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18198577	3R_18198577_SNP [dm3] 3R_22372855_SNP [dm6]	G	T	2.641e^-4	0.896	UTR_5_PRIME CG7069 DOWNSTREAM PyK
3R	13481191	3R_13481191_SNP [dm3] 3R_17655469_SNP [dm6]	C	A	2.645e^-4	0.896	INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16414332	2R_16414332_SNP [dm3] 2R_20526827_SNP [dm6]	C	A	2.648e^-4	0.896	DOWNSTREAM CG13422 INTERGENIC
3R	20099083	3R_20099083_SNP [dm3] 3R_24273361_SNP [dm6]	T	C	2.655e^-4	0.896	START_GAINED Orct2 UTR_5_PRIME Orct2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9077235	2L_9077235_SNP [dm3] 2L_9077235_SNP [dm6]	A	G	2.655e^-4	0.896	UTR_5_PRIME CG12439
3R	13653065	3R_13653065_DEL [dm3] 3R_17827343_DEL [dm6]	ACTGA	A	2.658e^-4	0.896	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15196709	2R_15196709_SNP [dm3] 2R_19309204_SNP [dm6]	A	G	2.660e^-4	0.896	SYNONYMOUS_CODING EndoB INTRON EndoB
2R	12078027	2R_12078027_SNP [dm3] 2R_16190522_SNP [dm6]	G	A	2.669e^-4	0.896	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23893336	3R_23893336_SNP [dm3] 3R_28067614_SNP [dm6]	G	A	2.683e^-4	0.896	INTRON CG34362
3R	23543872	3R_23543872_DEL [dm3] 3R_27718150_DEL [dm6]	TACAT	T	2.698e^-4	0.896	INTERGENIC
2L	16596982	2L_16596982_SNP [dm3] 2L_16596982_SNP [dm6]	A	T	2.701e^-4	0.896	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12965003	2R_12965003_SNP [dm3] 2R_17077498_SNP [dm6]	G	A	2.713e^-4	0.896	INTRON CG30460
2L	1885673	2L_1885673_SNP [dm3] 2L_1885673_SNP [dm6]	A	C	2.714e^-4	0.896	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19035735	2R_19035735_SNP [dm3] 2R_23148212_SNP [dm6]	C	T	2.718e^-4	0.896	INTERGENIC
3R	21294546	3R_21294546_SNP [dm3] 3R_25468824_SNP [dm6]	A	C	2.718e^-4	0.896	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26093402	3R_26093402_INS [dm3] 3R_30267680_INS [dm6]	T	TC	2.721e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3R	16599411	3R_16599411_INS [dm3] 3R_20773689_INS [dm6]	A	AG	2.721e^-4	0.896	INTRON Syp	TF binding site BDTNP1_TFBS_twi
3R	24782648	3R_24782648_SNP [dm3] 3R_28956926_SNP [dm6]	T	C	2.722e^-4	0.896	INTRON CG14521
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	2.725e^-4	0.896	INTERGENIC
3R	13373356	3R_13373356_SNP [dm3] 3R_17547634_SNP [dm6]	T	G	2.725e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21904436	3R_21904436_DEL [dm3] 3R_26078714_DEL [dm6]	TT	T	2.725e^-4	0.896	INTRON dys	TF binding site mE1_TFBS_cad
2L	2269326	2L_2269326_DEL [dm3] 2L_2269326_DEL [dm6]	TT	T	2.740e^-4	0.896	UPSTREAM CG17242 INTERGENIC
3R	25635972	3R_25635972_SNP [dm3] 3R_29810250_SNP [dm6]	A	G	2.745e^-4	0.896	INTRON ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8094454	3L_8094454_SNP [dm3] 3L_8101354_SNP [dm6]	A	C	2.759e^-4	0.896	INTRON Ect4
2R	10688517	2R_10688517_SNP [dm3] 2R_14801012_SNP [dm6]	T	C	2.762e^-4	0.896	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10733271	3R_10733271_SNP [dm3] 3R_14907549_SNP [dm6]	G	T	2.773e^-4	0.896	INTERGENIC
2L	12395159	2L_12395159_SNP [dm3] 2L_12395159_SNP [dm6]	A	G	2.776e^-4	0.896	INTRON bru-2
X	21066391	X_21066391_INS [dm3] X_21195364_INS [dm6]	C	CGCCCCTCCGC...	2.776e^-4	0.896	DOWNSTREAM CG14579 INTERGENIC
2R	9455931	2R_9455931_INS [dm3] 2R_13568426_INS [dm6]	A	AGGAAACGA	2.780e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	11998650	3R_11998650_SNP [dm3] 3R_16172928_SNP [dm6]	T	A	2.780e^-4	0.896	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1484034	2L_1484034_SNP [dm3] 2L_1484034_SNP [dm6]	A	G	2.783e^-4	0.896	INTERGENIC
2L	1480028	2L_1480028_SNP [dm3] 2L_1480028_SNP [dm6]	T	C	2.787e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12198219	3L_12198219_SNP [dm3] 3L_12205119_SNP [dm6]	G	T	2.792e^-4	0.896	SYNONYMOUS_CODING CG5626
2L	17567647	2L_17567647_SNP [dm3] 2L_17567647_SNP [dm6]	A	G	2.793e^-4	0.896	INTERGENIC
3L	685312	3L_685312_SNP [dm3] 3L_685312_SNP [dm6]	G	A	2.798e^-4	0.896	UTR_5_PRIME ebd1 DOWNSTREAM CG3344	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15267608	2R_15267608_SNP [dm3] 2R_19380103_SNP [dm6]	C	A	2.807e^-4	0.896	UTR_3_PRIME CG10062 UPSTREAM CG10073
3R	19622538	3R_19622538_SNP [dm3] 3R_23796816_SNP [dm6]	T	C	2.811e^-4	0.896	INTRON mbc
3R	16829683	3R_16829683_SNP [dm3] 3R_21003961_SNP [dm6]	A	T	2.818e^-4	0.896	INTRON Calx
3R	23678124	3R_23678124_DEL [dm3] 3R_27852402_DEL [dm6]	CTGAAAGC	C	2.822e^-4	0.896	INTRON CG34353
2R	12523325	2R_12523325_SNP [dm3] 2R_16635820_SNP [dm6]	G	T	2.846e^-4	0.896	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2L	11671864	2L_11671864_SNP [dm3] 2L_11671864_SNP [dm6]	C	G	2.849e^-4	0.896	INTERGENIC
3R	14707841	3R_14707841_SNP [dm3] 3R_18882119_SNP [dm6]	G	A	2.852e^-4	0.896	INTERGENIC
2R	14407106	2R_14407106_SNP [dm3] 2R_18519601_SNP [dm6]	G	C	2.859e^-4	0.896	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18259553	3R_18259553_DEL [dm3] 3R_22433831_DEL [dm6]	TT	T	2.863e^-4	0.896	INTRON CG13847	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15057491	3R_15057491_SNP [dm3] 3R_19231769_SNP [dm6]	T	A	2.874e^-4	0.896	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo
3R	482303	3R_482303_SNP [dm3] 3R_4656581_SNP [dm6]	G	C	2.875e^-4	0.896	NON_SYNONYMOUS_CODING spartin	TF binding site mE1_TFBS_sens
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	2.879e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6370500	2L_6370500_SNP [dm3] 2L_6370500_SNP [dm6]	G	A	2.883e^-4	0.896	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16868930	3R_16868930_SNP [dm3] 3R_21043208_SNP [dm6]	G	A	2.883e^-4	0.896	UPSTREAM Dhc93AB & 1 other INTERGENIC
2L	17468013	2L_17468013_SNP [dm3] 2L_17468013_SNP [dm6]	C	T	2.891e^-4	0.896	INTRON BicD	TF binding site mE1_TFBS_inv
2L	4325008	2L_4325008_SNP [dm3] 2L_4325008_SNP [dm6]	C	T	2.893e^-4	0.896	NON_SYNONYMOUS_CODING CG16857
2L	3211532	2L_3211532_INS [dm3] 2L_3211532_INS [dm6]	T	TT	2.900e^-4	0.896	DOWNSTREAM CR45336 INTERGENIC
3L	20526943	3L_20526943_SNP [dm3] 3L_20533843_SNP [dm6]	T	C	2.901e^-4	0.896	UPSTREAM CG13250 INTRON Rcd2 & 1 other
X	21055948	X_21055948_SNP [dm3] X_21184921_SNP [dm6]	C	A	2.911e^-4	0.896	INTERGENIC
3R	2143551	3R_2143551_SNP [dm3] 3R_6317829_SNP [dm6]	C	A	2.921e^-4	0.896	SYNONYMOUS_CODING Osi17
3R	24222266	3R_24222266_SNP [dm3] 3R_28396544_SNP [dm6]	T	A	2.927e^-4	0.896	INTERGENIC
3R	25750835	3R_25750835_SNP [dm3] 3R_29925113_SNP [dm6]	T	G	2.928e^-4	0.896	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
2L	4715664	2L_4715664_SNP [dm3] 2L_4715664_SNP [dm6]	T	C	2.929e^-4	0.896	INTRON CG34351
X	6651409	X_6651409_INS [dm3] X_6757376_INS [dm6]	T	TT	2.929e^-4	0.896	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	16596148	3R_16596148_SNP [dm3] 3R_20770426_SNP [dm6]	G	T	2.931e^-4	0.896	DOWNSTREAM Takl1 INTRON Syp	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
X	16085263	X_16085263_SNP [dm3] X_16191230_SNP [dm6]	A	G	2.935e^-4	0.896	DOWNSTREAM mir-985 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21259359	3R_21259359_SNP [dm3] 3R_25433637_SNP [dm6]	T	C	2.940e^-4	0.896	INTRON Fur1
2L	1391119	2L_1391119_SNP [dm3] 2L_1391119_SNP [dm6]	T	G	2.943e^-4	0.896	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
3R	445864	3R_445864_SNP [dm3] 3R_4620142_SNP [dm6]	C	A	2.946e^-4	0.896	INTRON 5-HT2A
3R	505933	3R_505933_SNP [dm3] 3R_4680211_SNP [dm6]	G	A	2.948e^-4	0.896	INTRON CG43427	TF binding site mE1_TFBS_kn
2L	12080486	2L_12080486_SNP [dm3] 2L_12080486_SNP [dm6]	A	T	2.956e^-4	0.896	DOWNSTREAM CR44590 EXON CR44591	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17599919	2R_17599919_SNP [dm3] 2R_21712414_SNP [dm6]	T	C	2.962e^-4	0.896	UPSTREAM CG30403 & 1 other INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4709151	2L_4709151_SNP [dm3] 2L_4709151_SNP [dm6]	T	A	2.962e^-4	0.896	INTRON CG34351
2R	5562944	2R_5562944_SNP [dm3] 2R_9675439_SNP [dm6]	A	G	2.965e^-4	0.896	INTRON Mmp2	TF binding site mE1_TFBS_inv
3R	21387396	3R_21387396_SNP [dm3] 3R_25561674_SNP [dm6]	A	C	2.965e^-4	0.896	INTRON msi
X	21135325	X_21135325_SNP [dm3] X_21264298_SNP [dm6]	A	G	2.974e^-4	0.896	INTRON CG32521
3R	13373501	3R_13373501_SNP [dm3] 3R_17547779_SNP [dm6]	C	A	2.976e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18523309	3R_18523309_SNP [dm3] 3R_22697587_SNP [dm6]	T	A	2.978e^-4	0.896	UPSTREAM Cyp6d4 INTRON cd
3R	12145664	3R_12145664_SNP [dm3] 3R_16319942_SNP [dm6]	A	T	2.987e^-4	0.896	INTRON Sulf1
2R	17372523	2R_17372523_SNP [dm3] 2R_21485018_SNP [dm6]	T	C	2.997e^-4	0.896	INTRON Sara
X	6416094	X_6416094_SNP [dm3] X_6522061_SNP [dm6]	G	C	2.998e^-4	0.896	INTRON CG42340
X	8317997	X_8317997_SNP [dm3] X_8423964_SNP [dm6]	G	A	2.999e^-4	0.896	NON_SYNONYMOUS_CODING Trf2 UTR_5_PRIME Trf2
3R	20099163	3R_20099163_SNP [dm3] 3R_24273441_SNP [dm6]	T	C	3.002e^-4	0.896	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25261895	3R_25261895_SNP [dm3] 3R_29436173_SNP [dm6]	A	T	3.007e^-4	0.896	INTRON Ptp99A
2L	20778977	2L_20778977_SNP [dm3] 2L_20778977_SNP [dm6]	T	C	3.013e^-4	0.896	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	13373493	3R_13373493_SNP [dm3] 3R_17547771_SNP [dm6]	A	T	3.020e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19311183	2R_19311183_SNP [dm3] 2R_23423660_SNP [dm6]	A	G	3.023e^-4	0.896	UPSTREAM CG9815 INTRON CG9815
3L	12198227	3L_12198227_SNP [dm3] 3L_12205127_SNP [dm6]	C	A	3.025e^-4	0.896	NON_SYNONYMOUS_CODING CG5626
X	6542934	X_6542934_SNP [dm3] X_6648901_SNP [dm6]	C	T	3.027e^-4	0.896	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
2L	22057757	2L_22057757_SNP [dm3] 2L_22057757_SNP [dm6]	A	T	3.027e^-4	0.896	INTERGENIC
2L	1140924	2L_1140924_SNP [dm3] 2L_1140924_SNP [dm6]	A	C	3.037e^-4	0.896	UTR_3_PRIME CG4577
3R	13373561	3R_13373561_SNP [dm3] 3R_17547839_SNP [dm6]	G	A	3.047e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1080964	3L_1080964_SNP [dm3] 3L_1080964_SNP [dm6]	T	A	3.048e^-4	0.896	INTRON bab1
2L	8625356	2L_8625356_SNP [dm3] 2L_8625356_SNP [dm6]	G	C	3.051e^-4	0.896	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	508570	X_508570_INS [dm3] X_614537_INS [dm6]	T	TT	3.053e^-4	0.896	INTRON CG13366
3R	22963235	3R_22963235_SNP [dm3] 3R_27137513_SNP [dm6]	T	G	3.054e^-4	0.896	INTRON CG6051
3R	22963242	3R_22963242_SNP [dm3] 3R_27137520_SNP [dm6]	G	C	3.054e^-4	0.896	INTRON CG6051
3R	9393502	3R_9393502_SNP [dm3] 3R_13567780_SNP [dm6]	C	T	3.068e^-4	0.896	INTERGENIC
3R	5273881	3R_5273881_SNP [dm3] 3R_9448159_SNP [dm6]	T	C	3.071e^-4	0.896	UTR_3_PRIME ps
3R	19609902	3R_19609902_SNP [dm3] 3R_23784180_SNP [dm6]	C	G	3.079e^-4	0.896	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16580561	3L_16580561_SNP [dm3] 3L_16587461_SNP [dm6]	C	T	3.080e^-4	0.896	SYNONYMOUS_CODING CG32163 UPSTREAM Syx8 INTRON CG32163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21055958	X_21055958_SNP [dm3] X_21184931_SNP [dm6]	A	T	3.080e^-4	0.896	INTERGENIC
3R	9393595	3R_9393595_SNP [dm3] 3R_13567873_SNP [dm6]	C	T	3.081e^-4	0.896	INTERGENIC
3R	25562544	3R_25562544_SNP [dm3] 3R_29736822_SNP [dm6]	G	C	3.082e^-4	0.896	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	413854	3R_413854_SNP [dm3] 3R_4588132_SNP [dm6]	T	G	3.086e^-4	0.896	EXON CR45558
3L	1451109	3L_1451109_SNP [dm3] 3L_1451109_SNP [dm6]	G	T	3.091e^-4	0.896	INTRON Ptp61F
X	8320120	X_8320120_SNP [dm3] X_8426087_SNP [dm6]	C	A	3.092e^-4	0.896	NON_SYNONYMOUS_CODING Trf2 UTR_5_PRIME Trf2	TF binding site mE1_TFBS_HSA
2L	16243653	2L_16243653_SNP [dm3] 2L_16243653_SNP [dm6]	A	G	3.093e^-4	0.896	NON_SYNONYMOUS_CODING CG42818
3L	18277455	3L_18277455_SNP [dm3] 3L_18284355_SNP [dm6]	T	C	3.102e^-4	0.896	INTERGENIC
3R	4815754	3R_4815754_SNP [dm3] 3R_8990032_SNP [dm6]	G	C	3.104e^-4	0.896	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
3R	4822095	3R_4822095_SNP [dm3] 3R_8996373_SNP [dm6]	A	G	3.104e^-4	0.896	SYNONYMOUS_CODING CG31100
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	3.105e^-4	0.896	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12031436	3R_12031436_SNP [dm3] 3R_16205714_SNP [dm6]	A	G	3.117e^-4	0.898	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10958460	2R_10958460_SNP [dm3] 2R_15070955_SNP [dm6]	G	T	3.121e^-4	0.898	INTERGENIC
X	3159896	X_3159896_SNP [dm3] X_3265863_SNP [dm6]	A	T	3.129e^-4	0.899	INTRON dnc
3R	11993757	3R_11993757_SNP [dm3] 3R_16168035_SNP [dm6]	A	G	3.140e^-4	0.901	SYNONYMOUS_CODING CG6006 DOWNSTREAM CR43472	TF binding site BDTNP1_TFBS_twi
3L	16860963	3L_16860963_SNP [dm3] 3L_16867863_SNP [dm6]	G	A	3.148e^-4	0.901	INTRON Lmpt
2R	14436628	2R_14436628_SNP [dm3] 2R_18549123_SNP [dm6]	G	A	3.175e^-4	0.905	DOWNSTREAM Rgk2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14690500	3L_14690500_SNP [dm3] 3L_14697400_SNP [dm6]	A	G	3.176e^-4	0.905	SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
2R	9454210	2R_9454210_SNP [dm3] 2R_13566705_SNP [dm6]	G	T	3.177e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13373388	3R_13373388_DEL [dm3] 3R_17547666_DEL [dm6]	ACAAAAACTCAA...	A	3.183e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17246005	2L_17246005_SNP [dm3] 2L_17246005_SNP [dm6]	T	G	3.184e^-4	0.905	INTRON beat-IIIc EXON CR44396
3R	16701972	3R_16701972_SNP [dm3] 3R_20876250_SNP [dm6]	G	A	3.196e^-4	0.907	INTERGENIC
X	20355870	X_20355870_SNP [dm3] X_20484843_SNP [dm6]	C	T	3.206e^-4	0.908	INTRON RhoGAP19D
3R	8476164	3R_8476164_SNP [dm3] 3R_12650442_SNP [dm6]	T	G	3.212e^-4	0.909	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	24441800	3R_24441800_DEL [dm3] 3R_28616078_DEL [dm6]	TT	T	3.220e^-4	0.909	UTR_5_PRIME CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4378225	2L_4378225_SNP [dm3] 2L_4378225_SNP [dm6]	G	A	3.230e^-4	0.909	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9456259	2R_9456259_SNP [dm3] 2R_13568754_SNP [dm6]	A	T	3.231e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8970285	2R_8970285_SNP [dm3] 2R_13082780_SNP [dm6]	C	A	3.246e^-4	0.909	INTERGENIC
2L	6374142	2L_6374142_SNP [dm3] 2L_6374142_SNP [dm6]	T	C	3.256e^-4	0.909	NON_SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14971188	3R_14971188_SNP [dm3] 3R_19145466_SNP [dm6]	G	A	3.256e^-4	0.909	INTRON Ppcs
3R	15669093	3R_15669093_SNP [dm3] 3R_19843371_SNP [dm6]	G	A	3.260e^-4	0.909	INTERGENIC
2L	3982320	2L_3982320_SNP [dm3] 2L_3982320_SNP [dm6]	A	T	3.262e^-4	0.909	INTRON fred
2L	3874788	2L_3874788_SNP [dm3] 2L_3874788_SNP [dm6]	T	G	3.278e^-4	0.909	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
3R	10744460	3R_10744460_DEL [dm3] 3R_14918738_DEL [dm6]	TTT	T	3.291e^-4	0.909	UTR_5_PRIME Sdr
3R	26907606	3R_26907606_SNP [dm3] 3R_31081884_SNP [dm6]	T	A	3.292e^-4	0.909	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13502910	3R_13502910_SNP [dm3] 3R_17677188_SNP [dm6]	A	G	3.293e^-4	0.909	SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4822791	3R_4822791_SNP [dm3] 3R_8997069_SNP [dm6]	A	T	3.300e^-4	0.909	UPSTREAM CG11977 INTRON CG31100
X	2541675	X_2541675_SNP [dm3] X_2647642_SNP [dm6]	T	C	3.305e^-4	0.909	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21253764	3R_21253764_SNP [dm3] 3R_25428042_SNP [dm6]	T	G	3.306e^-4	0.909	INTRON Fur1
3R	416416	3R_416416_SNP [dm3] 3R_4590694_SNP [dm6]	G	A	3.308e^-4	0.909	INTERGENIC
X	2538362	X_2538362_SNP [dm3] X_2644329_SNP [dm6]	T	G	3.311e^-4	0.909	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17567650	2L_17567650_SNP [dm3] 2L_17567650_SNP [dm6]	G	A	3.313e^-4	0.909	INTERGENIC
X	17659066	X_17659066_SNP [dm3] X_17765033_SNP [dm6]	C	T	3.317e^-4	0.909	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11711832	2L_11711832_SNP [dm3] 2L_11711832_SNP [dm6]	A	T	3.323e^-4	0.909	INTERGENIC
3R	5698433	3R_5698433_SNP [dm3] 3R_9872711_SNP [dm6]	A	G	3.324e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	12080721	2L_12080721_SNP [dm3] 2L_12080721_SNP [dm6]	T	C	3.326e^-4	0.909	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11359556	2R_11359556_SNP [dm3] 2R_15472051_SNP [dm6]	T	C	3.332e^-4	0.909	DOWNSTREAM CG43729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	21066670	X_21066670_DEL [dm3] X_21195643_DEL [dm6]	GCTACG	A	3.335e^-4	0.909	INTERGENIC
3R	25616097	3R_25616097_SNP [dm3] 3R_29790375_SNP [dm6]	G	A	3.356e^-4	0.909	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
X	1520244	X_1520244_SNP [dm3] X_1626211_SNP [dm6]	G	A	3.389e^-4	0.909	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_chinmo
3R	24215953	3R_24215953_SNP [dm3] 3R_28390231_SNP [dm6]	G	C	3.392e^-4	0.909	INTERGENIC
2R	9526877	2R_9526877_SNP [dm3] 2R_13639372_SNP [dm6]	A	C	3.393e^-4	0.909	INTRON fas	TF binding site mE1_TFBS_HSA
3L	14673308	3L_14673308_SNP [dm3] 3L_14680208_SNP [dm6]	C	G	3.394e^-4	0.909	UTR_5_PRIME ome
2L	12385825	2L_12385825_SNP [dm3] 2L_12385825_SNP [dm6]	T	G	3.396e^-4	0.909	INTRON bru-2
3R	17774113	3R_17774113_SNP [dm3] 3R_21948391_SNP [dm6]	T	C	3.410e^-4	0.909	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12080571	2L_12080571_INS [dm3] 2L_12080571_INS [dm6]	A	ACTTTCCTTATCATTTTGTT...	3.411e^-4	0.909	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12080580	2L_12080580_SNP [dm3] 2L_12080580_SNP [dm6]	C	A	3.411e^-4	0.909	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22922044	3R_22922044_SNP [dm3] 3R_27096322_SNP [dm6]	T	C	3.417e^-4	0.909	NON_SYNONYMOUS_CODING eater DOWNSTREAM CG14259
3R	5698432	3R_5698432_SNP [dm3] 3R_9872710_SNP [dm6]	A	T	3.432e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	13373699	3R_13373699_SNP [dm3] 3R_17547977_SNP [dm6]	A	T	3.438e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23283380	3R_23283380_SNP [dm3] 3R_27457658_SNP [dm6]	A	G	3.458e^-4	0.909	INTERGENIC
3R	4908858	3R_4908858_SNP [dm3] 3R_9083136_SNP [dm6]	C	A	3.459e^-4	0.909	INTRON pum
2L	5920820	2L_5920820_SNP [dm3] 2L_5920820_SNP [dm6]	T	A	3.459e^-4	0.909	INTRON bchs
2L	2671015	2L_2671015_SNP [dm3] 2L_2671015_SNP [dm6]	A	C	3.471e^-4	0.909	NON_SYNONYMOUS_CODING Gr23a INTRON Gr23a
2R	15255783	2R_15255783_SNP [dm3] 2R_19368278_SNP [dm6]	C	G	3.473e^-4	0.909	DOWNSTREAM CG10051 INTRON CG9416
3R	24391296	3R_24391296_SNP [dm3] 3R_28565574_SNP [dm6]	G	C	3.479e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	4376243	2L_4376243_SNP [dm3] 2L_4376243_SNP [dm6]	G	A	3.481e^-4	0.909	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11980368	3R_11980368_SNP [dm3] 3R_16154646_SNP [dm6]	C	G	3.484e^-4	0.909	UPSTREAM CG6006 INTERGENIC
2L	2291869	2L_2291869_SNP [dm3] 2L_2291869_SNP [dm6]	A	T	3.484e^-4	0.909	INTERGENIC
3L	1498032	3L_1498032_SNP [dm3] 3L_1498032_SNP [dm6]	A	T	3.502e^-4	0.909	SYNONYMOUS_CODING pUf68 DOWNSTREAM scaRNA:MeU2-48	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	568384	X_568384_DEL [dm3] X_674351_DEL [dm6]	TATT	T	3.509e^-4	0.909	INTERGENIC
2R	13151982	2R_13151982_SNP [dm3] 2R_17264477_SNP [dm6]	T	G	3.512e^-4	0.909	INTRON mbl	TF binding site BDTNP1_TFBS_z
3L	16873250	3L_16873250_SNP [dm3] 3L_16880150_SNP [dm6]	C	G	3.512e^-4	0.909	DOWNSTREAM CG32170 INTRON Lmpt
2L	1479171	2L_1479171_SNP [dm3] 2L_1479171_SNP [dm6]	C	T	3.514e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21295670	3R_21295670_SNP [dm3] 3R_25469948_SNP [dm6]	C	T	3.519e^-4	0.909	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15183241	2L_15183241_SNP [dm3] 2L_15183241_SNP [dm6]	C	A	3.521e^-4	0.909	INTRON CG4168
3L	13049767	3L_13049767_INS [dm3] 3L_13056667_INS [dm6]	A	AT	3.523e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4406161	2R_4406161_DEL [dm3] 2R_8518656_DEL [dm6]	GGCCT	G	3.526e^-4	0.909	INTRON mtt
3R	21261938	3R_21261938_SNP [dm3] 3R_25436216_SNP [dm6]	C	T	3.531e^-4	0.909	INTRON Fur1
X	568391	X_568391_SNP [dm3] X_674358_SNP [dm6]	A	T	3.538e^-4	0.909	INTERGENIC
X	14463457	X_14463457_SNP [dm3] X_14569424_SNP [dm6]	T	G	3.545e^-4	0.909	INTERGENIC
3R	16077995	3R_16077995_DEL [dm3] 3R_20252273_DEL [dm6]	CCTACACAGCCGAAGTTCCT...	C	3.546e^-4	0.909	UPSTREAM cic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	6285544	3L_6285544_SNP [dm3] 3L_6292444_SNP [dm6]	C	G	3.551e^-4	0.909	INTERGENIC
X	2544082	X_2544082_SNP [dm3] X_2650049_SNP [dm6]	C	G	3.574e^-4	0.909	INTRON sgg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3558599	X_3558599_SNP [dm3] X_3664566_SNP [dm6]	C	G	3.579e^-4	0.909	SYNONYMOUS_CODING AstA-R1
2R	11692641	2R_11692641_SNP [dm3] 2R_15805136_SNP [dm6]	C	A	3.593e^-4	0.909	INTRON tun & 1 other
X	6014804	X_6014804_SNP [dm3] X_6120771_SNP [dm6]	C	T	3.596e^-4	0.909	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3L	12197268	3L_12197268_SNP [dm3] 3L_12204168_SNP [dm6]	A	G	3.600e^-4	0.909	UTR_3_PRIME CG5626 UPSTREAM Adk1	TF binding site mE1_TFBS_HSA
3R	26907593	3R_26907593_DEL [dm3] 3R_31081871_DEL [dm6]	CTTATAAT	A	3.604e^-4	0.909	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11950172	X_11950172_SNP [dm3] X_12056139_SNP [dm6]	T	C	3.609e^-4	0.909	SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_HSA
2L	14391362	2L_14391362_SNP [dm3] 2L_14391362_SNP [dm6]	G	C	3.615e^-4	0.909	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3R	23128629	3R_23128629_SNP [dm3] 3R_27302907_SNP [dm6]	G	A	3.617e^-4	0.909	SPLICE_SITE_REGION CG3339 INTRON CG3339
3L	14673300	3L_14673300_SNP [dm3] 3L_14680200_SNP [dm6]	T	C	3.619e^-4	0.909	SPLICE_SITE_REGION ome UTR_5_PRIME ome
2L	5331478	2L_5331478_SNP [dm3] 2L_5331478_SNP [dm6]	T	C	3.619e^-4	0.909	INTRON fusl
3R	23285698	3R_23285698_SNP [dm3] 3R_27459976_SNP [dm6]	T	C	3.621e^-4	0.909	INTERGENIC
3R	13373434	3R_13373434_INS [dm3] 3R_17547712_INS [dm6]	T	TT	3.629e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16350333	3R_16350333_SNP [dm3] 3R_20524611_SNP [dm6]	T	C	3.631e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8636720	2R_8636720_SNP [dm3] 2R_12749215_SNP [dm6]	G	A	3.644e^-4	0.909	SYNONYMOUS_CODING CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15174508	2L_15174508_SNP [dm3] 2L_15174508_SNP [dm6]	A	C	3.666e^-4	0.909	INTRON CG4168
2R	5567184	2R_5567184_SNP [dm3] 2R_9679679_SNP [dm6]	G	A	3.670e^-4	0.909	INTRON Mmp2
3R	4815277	3R_4815277_SNP [dm3] 3R_8989555_SNP [dm6]	A	T	3.671e^-4	0.909	NON_SYNONYMOUS_CODING CG11970
3R	23541156	3R_23541156_SNP [dm3] 3R_27715434_SNP [dm6]	C	T	3.679e^-4	0.909	INTERGENIC
3R	4520118	3R_4520118_SNP [dm3] 3R_8694396_SNP [dm6]	C	G	3.691e^-4	0.909	INTRON hb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5217040	3L_5217040_SNP [dm3] 3L_5223940_SNP [dm6]	A	T	3.704e^-4	0.909	INTRON shep
3L	5217041	3L_5217041_SNP [dm3] 3L_5223941_SNP [dm6]	C	G	3.704e^-4	0.909	INTRON shep
3R	21743200	3R_21743200_SNP [dm3] 3R_25917478_SNP [dm6]	T	C	3.705e^-4	0.909	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
2R	4406518	2R_4406518_SNP [dm3] 2R_8519013_SNP [dm6]	C	T	3.709e^-4	0.909	INTRON mtt
X	21056031	X_21056031_SNP [dm3] X_21185004_SNP [dm6]	A	C	3.712e^-4	0.909	INTERGENIC
3R	9392441	3R_9392441_SNP [dm3] 3R_13566719_SNP [dm6]	G	T	3.715e^-4	0.909	INTERGENIC
X	19133448	X_19133448_INS [dm3] X_19239415_INS [dm6]	A	AAGCCAATA	3.718e^-4	0.909	INTRON CG14196
X	21029474	X_21029474_DEL [dm3] X_21158447_DEL [dm6]	AT	A	3.722e^-4	0.909	INTERGENIC	transposable element FlyBase
3R	7892960	3R_7892960_SNP [dm3] 3R_12067238_SNP [dm6]	T	C	3.728e^-4	0.909	INTERGENIC
2L	12502753	2L_12502753_SNP [dm3] 2L_12502753_SNP [dm6]	G	A	3.734e^-4	0.909	INTRON bun
3R	23546817	3R_23546817_SNP [dm3] 3R_27721095_SNP [dm6]	C	A	3.742e^-4	0.909	INTERGENIC
3L	11671556	3L_11671556_SNP [dm3] 3L_11678456_SNP [dm6]	A	G	3.742e^-4	0.909	INTRON CG32085
2R	9151768	2R_9151768_SNP [dm3] 2R_13264263_SNP [dm6]	T	C	3.755e^-4	0.909	UTR_3_PRIME CG42319 DOWNSTREAM CG42319 INTRON CG42319
2R	9455599	2R_9455599_INS [dm3] 2R_13568094_INS [dm6]	T	TT	3.756e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	23286812	3R_23286812_SNP [dm3] 3R_27461090_SNP [dm6]	T	G	3.765e^-4	0.909	INTERGENIC
X	14318261	X_14318261_SNP [dm3] X_14424228_SNP [dm6]	G	A	3.775e^-4	0.909	INTRON dpr8
X	15071442	X_15071442_SNP [dm3] X_15177409_SNP [dm6]	A	G	3.781e^-4	0.909	INTRON CG43737
3R	24440690	3R_24440690_SNP [dm3] 3R_28614968_SNP [dm6]	G	T	3.781e^-4	0.909	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25306369	3R_25306369_SNP [dm3] 3R_29480647_SNP [dm6]	T	G	3.786e^-4	0.909	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3R	21313614	3R_21313614_SNP [dm3] 3R_25487892_SNP [dm6]	G	A	3.788e^-4	0.909	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6295063	3L_6295063_SNP [dm3] 3L_6301963_SNP [dm6]	G	A	3.793e^-4	0.909	DOWNSTREAM CR45420 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8714816	2R_8714816_SNP [dm3] 2R_12827311_SNP [dm6]	C	T	3.796e^-4	0.909	INTERGENIC
3R	23017108	3R_23017108_SNP [dm3] 3R_27191386_SNP [dm6]	T	G	3.814e^-4	0.909	INTRON Ser
3R	9390664	3R_9390664_SNP [dm3] 3R_13564942_SNP [dm6]	A	G	3.815e^-4	0.909	INTERGENIC
2R	7359161	2R_7359161_SNP [dm3] 2R_11471656_SNP [dm6]	G	T	3.816e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21685972	2L_21685972_SNP [dm3] 2L_21685972_SNP [dm6]	A	G	3.839e^-4	0.909	INTRON CG31619	transposable element FlyBase
2R	9115366	2R_9115366_SNP [dm3] 2R_13227861_SNP [dm6]	C	G	3.845e^-4	0.909	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
3L	12198236	3L_12198236_SNP [dm3] 3L_12205136_SNP [dm6]	T	C	3.855e^-4	0.909	NON_SYNONYMOUS_CODING CG5626
3R	7656561	3R_7656561_SNP [dm3] 3R_11830839_SNP [dm6]	T	C	3.857e^-4	0.909	INTRON CG6959
X	582813	X_582813_SNP [dm3] X_688780_SNP [dm6]	A	G	3.862e^-4	0.909	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	2735224	2L_2735224_SNP [dm3] 2L_2735224_SNP [dm6]	T	A	3.871e^-4	0.909	UPSTREAM CG31689 INTRON CG31689
2L	12385853	2L_12385853_SNP [dm3] 2L_12385853_SNP [dm6]	T	A	3.871e^-4	0.909	INTRON bru-2
3R	19465979	3R_19465979_SNP [dm3] 3R_23640257_SNP [dm6]	G	T	3.876e^-4	0.909	INTRON CG31145
3R	435241	3R_435241_SNP [dm3] 3R_4609519_SNP [dm6]	G	T	3.877e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1060256	3L_1060256_SNP [dm3] 3L_1060256_SNP [dm6]	G	C	3.878e^-4	0.909	INTRON bab1
3L	1072144	3L_1072144_DEL [dm3] 3L_1072144_DEL [dm6]	AAA	A	3.879e^-4	0.909	INTRON bab1
3R	11008475	3R_11008475_SNP [dm3] 3R_15182753_SNP [dm6]	T	A	3.884e^-4	0.909	INTRON Gyc88E
3R	23812956	3R_23812956_SNP [dm3] 3R_27987234_SNP [dm6]	T	C	3.886e^-4	0.909	INTRON betaTub97EF	TF binding site mE1_TFBS_cnc
2L	3445174	2L_3445174_SNP [dm3] 2L_3445174_SNP [dm6]	C	G	3.889e^-4	0.909	UPSTREAM CG2772 INTERGENIC
2R	9442150	2R_9442150_SNP [dm3] 2R_13554645_SNP [dm6]	A	C	3.889e^-4	0.909	SYNONYMOUS_CODING Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20858501	X_20858501_DEL [dm3] X_20987474_DEL [dm6]	GGACTG	G	3.903e^-4	0.909	INTERGENIC
2R	11359517	2R_11359517_SNP [dm3] 2R_15472012_SNP [dm6]	T	C	3.904e^-4	0.909	DOWNSTREAM CG43729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	4539395	X_4539395_SNP [dm3] X_4645362_SNP [dm6]	C	T	3.905e^-4	0.909	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
3R	10642183	3R_10642183_SNP [dm3] 3R_14816461_SNP [dm6]	A	G	3.921e^-4	0.909	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	15352683	3L_15352683_SNP [dm3] 3L_15359583_SNP [dm6]	C	T	3.923e^-4	0.909	INTERGENIC
3R	7651045	3R_7651045_SNP [dm3] 3R_11825323_SNP [dm6]	C	G	3.928e^-4	0.909	INTRON CG6959
3R	26095402	3R_26095402_SNP [dm3] 3R_30269680_SNP [dm6]	T	A	3.932e^-4	0.909	INTERGENIC
3L	6614344	3L_6614344_SNP [dm3] 3L_6621244_SNP [dm6]	A	C	3.936e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25369382	3R_25369382_SNP [dm3] 3R_29543660_SNP [dm6]	T	A	3.941e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	9198452	2R_9198452_SNP [dm3] 2R_13310947_SNP [dm6]	C	G	3.944e^-4	0.909	INTERGENIC
3R	13935067	3R_13935067_SNP [dm3] 3R_18109345_SNP [dm6]	C	G	3.946e^-4	0.909	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	25914256	3R_25914256_SNP [dm3] 3R_30088534_SNP [dm6]	A	G	3.949e^-4	0.909	INTRON sima
X	20354032	X_20354032_SNP [dm3] X_20483005_SNP [dm6]	T	A	3.959e^-4	0.909	INTRON RhoGAP19D	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	15658335	2R_15658335_DEL [dm3] 2R_19770830_DEL [dm6]	TAA	T	3.960e^-4	0.909	INTRON Or56a
2R	19927160	2R_19927160_SNP [dm3] 2R_24039637_SNP [dm6]	T	G	3.965e^-4	0.909	SYNONYMOUS_CODING IntS1
X	8317592	X_8317592_DEL [dm3] X_8423559_DEL [dm6]	TT	T	3.967e^-4	0.909	UTR_5_PRIME Trf2	TF binding site BDTNP1_TFBS_dl
3L	5043342	3L_5043342_SNP [dm3] 3L_5043342_SNP [dm6]	T	C	3.969e^-4	0.909	INTRON Con
2R	7109454	2R_7109454_SNP [dm3] 2R_11221949_SNP [dm6]	A	C	3.969e^-4	0.909	UTR_3_PRIME Syx6 UPSTREAM CG7737
2L	15351885	2L_15351885_SNP [dm3] 2L_15351885_SNP [dm6]	T	C	3.978e^-4	0.909	INTERGENIC
3L	6513424	3L_6513424_SNP [dm3] 3L_6520324_SNP [dm6]	A	G	3.979e^-4	0.909	INTRON sfl
3R	23111514	3R_23111514_SNP [dm3] 3R_27285792_SNP [dm6]	C	T	3.980e^-4	0.909	NON_SYNONYMOUS_CODING CG3368
3R	15231846	3R_15231846_INS [dm3] 3R_19406124_INS [dm6]	T	TCTTAATCAAC...	3.984e^-4	0.909	UTR_3_PRIME CG5316
3R	25505315	3R_25505315_SNP [dm3] 3R_29679593_SNP [dm6]	C	G	3.985e^-4	0.909	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1647597	2L_1647597_SNP [dm3] 2L_1647597_SNP [dm6]	C	T	3.988e^-4	0.909	UPSTREAM CR45695 INTERGENIC
2L	18937879	2L_18937879_SNP [dm3] 2L_18937879_SNP [dm6]	A	G	3.994e^-4	0.909	INTRON ssp3
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	4.000e^-4	0.909	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2R	4406374	2R_4406374_SNP [dm3] 2R_8518869_SNP [dm6]	G	A	4.010e^-4	0.909	INTRON mtt
2R	4406385	2R_4406385_SNP [dm3] 2R_8518880_SNP [dm6]	T	C	4.010e^-4	0.909	INTRON mtt
3R	25343380	3R_25343380_SNP [dm3] 3R_29517658_SNP [dm6]	G	T	4.011e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	4.015e^-4	0.909	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16387054	3R_16387054_SNP [dm3] 3R_20561332_SNP [dm6]	C	T	4.028e^-4	0.909	UTR_5_PRIME CG5191 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18526507	3R_18526507_SNP [dm3] 3R_22700785_SNP [dm6]	C	T	4.034e^-4	0.909	SYNONYMOUS_CODING CCAP DOWNSTREAM Cyp6d4
3L	5667311	3L_5667311_SNP [dm3] 3L_5674211_SNP [dm6]	C	G	4.040e^-4	0.909	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	20294038	2L_20294038_SNP [dm3] 2L_20294038_SNP [dm6]	A	G	4.042e^-4	0.909	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24223347	3R_24223347_SNP [dm3] 3R_28397625_SNP [dm6]	T	C	4.043e^-4	0.909	INTERGENIC
2R	14243641	2R_14243641_SNP [dm3] 2R_18356136_SNP [dm6]	G	T	4.049e^-4	0.909	UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20355322	X_20355322_SNP [dm3] X_20484295_SNP [dm6]	A	G	4.051e^-4	0.909	INTRON RhoGAP19D
3R	21387372	3R_21387372_SNP [dm3] 3R_25561650_SNP [dm6]	C	T	4.051e^-4	0.909	INTRON msi
3L	4489421	3L_4489421_SNP [dm3] 3L_4489421_SNP [dm6]	G	C	4.053e^-4	0.909	INTRON CG13722
3R	16315219	3R_16315219_SNP [dm3] 3R_20489497_SNP [dm6]	C	G	4.056e^-4	0.909	INTERGENIC
X	17658807	X_17658807_SNP [dm3] X_17764774_SNP [dm6]	C	G	4.057e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10637810	3L_10637810_SNP [dm3] 3L_10644710_SNP [dm6]	T	A	4.058e^-4	0.909	DOWNSTREAM CG14153 INTRON CG32066
3L	17323860	3L_17323860_SNP [dm3] 3L_17330760_SNP [dm6]	A	G	4.060e^-4	0.909	INTERGENIC
X	21055945	X_21055945_SNP [dm3] X_21184918_SNP [dm6]	T	G	4.063e^-4	0.909	INTERGENIC
3R	15144675	3R_15144675_SNP [dm3] 3R_19318953_SNP [dm6]	C	G	4.081e^-4	0.909	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14661390	2R_14661390_SNP [dm3] 2R_18773885_SNP [dm6]	A	G	4.093e^-4	0.909	NON_SYNONYMOUS_CODING Mctp UTR_3_PRIME Mctp
2L	15336399	2L_15336399_SNP [dm3] 2L_15336399_SNP [dm6]	C	T	4.093e^-4	0.909	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4578969	3L_4578969_SNP [dm3] 3L_4578969_SNP [dm6]	T	C	4.097e^-4	0.909	INTRON CG42540
3R	21298817	3R_21298817_SNP [dm3] 3R_25473095_SNP [dm6]	A	G	4.106e^-4	0.909	UPSTREAM Vps33B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13182559	3L_13182559_SNP [dm3] 3L_13189459_SNP [dm6]	C	G	4.119e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10369340	3L_10369340_SNP [dm3] 3L_10376240_SNP [dm6]	C	T	4.121e^-4	0.909	INTERGENIC
2L	3998571	2L_3998571_SNP [dm3] 2L_3998571_SNP [dm6]	A	G	4.123e^-4	0.909	INTERGENIC
3R	23687130	3R_23687130_SNP [dm3] 3R_27861408_SNP [dm6]	T	A	4.132e^-4	0.909	INTRON CG34353
3R	16702009	3R_16702009_SNP [dm3] 3R_20876287_SNP [dm6]	T	C	4.133e^-4	0.909	INTERGENIC
3R	21265161	3R_21265161_SNP [dm3] 3R_25439439_SNP [dm6]	A	T	4.139e^-4	0.909	INTRON Fur1
X	21053662	X_21053662_SNP [dm3] X_21182635_SNP [dm6]	C	T	4.140e^-4	0.909	INTERGENIC
X	6542916	X_6542916_SNP [dm3] X_6648883_SNP [dm6]	G	A	4.145e^-4	0.909	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
2R	7059785	2R_7059785_SNP [dm3] 2R_11172280_SNP [dm6]	G	A	4.145e^-4	0.909	UPSTREAM CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
3L	18188208	3L_18188208_SNP [dm3] 3L_18195108_SNP [dm6]	C	T	4.152e^-4	0.909	INTERGENIC
3R	25261873	3R_25261873_SNP [dm3] 3R_29436151_SNP [dm6]	C	T	4.154e^-4	0.909	INTRON Ptp99A
3R	24222535	3R_24222535_INS [dm3] 3R_28396813_INS [dm6]	A	AA	4.158e^-4	0.909	INTERGENIC
2L	10672633	2L_10672633_SNP [dm3] 2L_10672633_SNP [dm6]	T	G	4.162e^-4	0.909	INTERGENIC
3L	9016645	3L_9016645_SNP [dm3] 3L_9023545_SNP [dm6]	G	A	4.163e^-4	0.909	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	11773830	2L_11773830_SNP [dm3] 2L_11773830_SNP [dm6]	T	G	4.165e^-4	0.909	INTERGENIC
3R	13472062	3R_13472062_SNP [dm3] 3R_17646340_SNP [dm6]	C	T	4.169e^-4	0.909	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM tRNA:CR31578 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3423882	X_3423882_SNP [dm3] X_3529849_SNP [dm6]	A	G	4.171e^-4	0.909	INTRON CG32791
2R	8539688	2R_8539688_SNP [dm3] 2R_12652183_SNP [dm6]	G	A	4.172e^-4	0.909	SYNONYMOUS_CODING CG8778 UPSTREAM ZnT49B
3L	424442	3L_424442_SNP [dm3] 3L_424442_SNP [dm6]	T	G	4.174e^-4	0.909	INTERGENIC
3R	21743085	3R_21743085_SNP [dm3] 3R_25917363_SNP [dm6]	G	A	4.175e^-4	0.909	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
2L	7147769	2L_7147769_SNP [dm3] 2L_7147769_SNP [dm6]	G	T	4.181e^-4	0.909	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	7359162	2R_7359162_SNP [dm3] 2R_11471657_SNP [dm6]	G	T	4.187e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24948053	3R_24948053_SNP [dm3] 3R_29122331_SNP [dm6]	C	A	4.190e^-4	0.909	START_GAINED yem UTR_5_PRIME yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl
3R	23812709	3R_23812709_SNP [dm3] 3R_27986987_SNP [dm6]	G	A	4.193e^-4	0.909	INTRON betaTub97EF	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	2861434	3R_2861434_SNP [dm3] 3R_7035712_SNP [dm6]	A	G	4.195e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	1438543	2L_1438543_SNP [dm3] 2L_1438543_SNP [dm6]	C	T	4.201e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	18721961	3R_18721961_SNP [dm3] 3R_22896239_SNP [dm6]	G	T	4.202e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15174933	2R_15174933_SNP [dm3] 2R_19287428_SNP [dm6]	A	T	4.205e^-4	0.909	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11302295	2R_11302295_SNP [dm3] 2R_15414790_SNP [dm6]	T	C	4.206e^-4	0.909	INTRON CG43729
3R	13492866	3R_13492866_SNP [dm3] 3R_17667144_SNP [dm6]	G	T	4.207e^-4	0.909	UPSTREAM CR45045 INTRON CG14322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	10920531	2L_10920531_SNP [dm3] 2L_10920531_SNP [dm6]	C	G	4.210e^-4	0.909	INTRON dpr2
3L	4489397	3L_4489397_SNP [dm3] 3L_4489397_SNP [dm6]	A	G	4.223e^-4	0.909	INTRON CG13722
3R	15385238	3R_15385238_SNP [dm3] 3R_19559516_SNP [dm6]	A	G	4.228e^-4	0.909	INTRON Dys
3R	23648143	3R_23648143_SNP [dm3] 3R_27822421_SNP [dm6]	G	A	4.232e^-4	0.909	INTRON CG34353
X	1493287	X_1493287_SNP [dm3] X_1599254_SNP [dm6]	C	T	4.235e^-4	0.909	INTRON br & 1 other
3R	25750826	3R_25750826_SNP [dm3] 3R_29925104_SNP [dm6]	G	A	4.238e^-4	0.909	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
2R	5048337	2R_5048337_SNP [dm3] 2R_9160832_SNP [dm6]	G	A	4.242e^-4	0.909	UTR_5_PRIME CG8008 UPSTREAM CR44283 INTRON CG8008
2R	14204666	2R_14204666_SNP [dm3] 2R_18317161_SNP [dm6]	C	T	4.245e^-4	0.909	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12200109	3L_12200109_SNP [dm3] 3L_12207009_SNP [dm6]	G	A	4.250e^-4	0.909	UTR_3_PRIME app UPSTREAM CG5626	TF binding site mE1_TFBS_cad
2R	17537257	2R_17537257_SNP [dm3] 2R_21649752_SNP [dm6]	A	C	4.252e^-4	0.909	INTRON CG10082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8538058	2R_8538058_SNP [dm3] 2R_12650553_SNP [dm6]	C	G	4.256e^-4	0.909	DOWNSTREAM CG8778 INTERGENIC
3R	13196662	3R_13196662_SNP [dm3] 3R_17370940_SNP [dm6]	C	A	4.262e^-4	0.909	DOWNSTREAM CR44256 INTERGENIC
2L	5907508	2L_5907508_SNP [dm3] 2L_5907508_SNP [dm6]	A	C	4.270e^-4	0.909	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6382882	2R_6382882_SNP [dm3] 2R_10495377_SNP [dm6]	T	G	4.280e^-4	0.909	DOWNSTREAM lola INTRON lola
3R	13502837	3R_13502837_SNP [dm3] 3R_17677115_SNP [dm6]	C	A	4.282e^-4	0.909	NON_SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23260955	3R_23260955_SNP [dm3] 3R_27435233_SNP [dm6]	T	C	4.286e^-4	0.909	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	23260958	3R_23260958_SNP [dm3] 3R_27435236_SNP [dm6]	G	A	4.286e^-4	0.909	INTRON side	TF binding site BDTNP1_TFBS_twi
3L	5667369	3L_5667369_MNP [dm3] 3L_5674269_MNP [dm6]	TCTGCG	GAAATA	4.287e^-4	0.909	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	12306209	3L_12306209_SNP [dm3] 3L_12313109_SNP [dm6]	C	G	4.287e^-4	0.909	INTERGENIC
2L	11001157	2L_11001157_SNP [dm3] 2L_11001157_SNP [dm6]	A	T	4.289e^-4	0.909	UPSTREAM lectin-33A & 1 other INTRON aub
2R	14531650	2R_14531650_SNP [dm3] 2R_18644145_SNP [dm6]	T	A	4.289e^-4	0.909	INTRON SP2637
X	5827398	X_5827398_SNP [dm3] X_5933365_SNP [dm6]	C	T	4.302e^-4	0.909	INTRON CG3726
3L	16873236	3L_16873236_SNP [dm3] 3L_16880136_SNP [dm6]	T	C	4.305e^-4	0.909	DOWNSTREAM CG32170 INTRON Lmpt
3R	23111611	3R_23111611_SNP [dm3] 3R_27285889_SNP [dm6]	A	G	4.306e^-4	0.909	SYNONYMOUS_CODING CG3368
2L	10458383	2L_10458383_SNP [dm3] 2L_10458383_SNP [dm6]	A	T	4.317e^-4	0.909	INTRON LM408	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5568774	2R_5568774_SNP [dm3] 2R_9681269_SNP [dm6]	T	A	4.324e^-4	0.909	INTRON Mmp2
2L	1141066	2L_1141066_SNP [dm3] 2L_1141066_SNP [dm6]	T	C	4.337e^-4	0.909	UTR_3_PRIME CG4577 DOWNSTREAM CG4577
2R	11690077	2R_11690077_SNP [dm3] 2R_15802572_SNP [dm6]	A	G	4.353e^-4	0.909	INTRON Zasp52 & 1 other
2L	7759676	2L_7759676_SNP [dm3] 2L_7759676_SNP [dm6]	C	T	4.355e^-4	0.909	INTRON CG7196
3R	23386777	3R_23386777_SNP [dm3] 3R_27561055_SNP [dm6]	G	A	4.366e^-4	0.909	UPSTREAM snmRNA:157 DOWNSTREAM wdb INTRON CG5646
3L	1496812	3L_1496812_SNP [dm3] 3L_1496812_SNP [dm6]	T	C	4.371e^-4	0.909	UPSTREAM CG12084 DOWNSTREAM pUf68 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1499273	X_1499273_SNP [dm3] X_1605240_SNP [dm6]	G	A	4.373e^-4	0.909	INTRON br & 1 other	TF binding site mE1_TFBS_chinmo
3R	7365309	3R_7365309_SNP [dm3] 3R_11539587_SNP [dm6]	C	T	4.375e^-4	0.909	INTRON dpr4
2L	9563771	2L_9563771_SNP [dm3] 2L_9563771_SNP [dm6]	A	G	4.386e^-4	0.909	INTRON jp
3R	24252016	3R_24252016_SNP [dm3] 3R_28426294_SNP [dm6]	C	T	4.398e^-4	0.909	INTRON beat-VI
3R	17253401	3R_17253401_SNP [dm3] 3R_21427679_SNP [dm6]	G	A	4.398e^-4	0.909	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9198446	2R_9198446_SNP [dm3] 2R_13310941_SNP [dm6]	A	T	4.401e^-4	0.909	INTERGENIC
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	4.404e^-4	0.909	UPSTREAM mir-276a EXON CR44327
2R	9455509	2R_9455509_SNP [dm3] 2R_13568004_SNP [dm6]	G	A	4.412e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	25198289	3R_25198289_SNP [dm3] 3R_29372567_SNP [dm6]	G	T	4.418e^-4	0.909	INTERGENIC
2R	11502092	2R_11502092_SNP [dm3] 2R_15614587_SNP [dm6]	C	T	4.420e^-4	0.909	START_GAINED CG42524 UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10628180	3L_10628180_SNP [dm3] 3L_10635080_SNP [dm6]	C	T	4.421e^-4	0.909	DOWNSTREAM CG34001 INTRON E_z_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6679028	X_6679028_SNP [dm3] X_6784995_SNP [dm6]	G	A	4.423e^-4	0.909	INTRON C3G
2L	12080574	2L_12080574_SNP [dm3] 2L_12080574_SNP [dm6]	T	G	4.430e^-4	0.909	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12031379	3R_12031379_DEL [dm3] 3R_16205657_DEL [dm6]	TCCATTAGTTC...	T	4.434e^-4	0.909	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11678181	2R_11678181_SNP [dm3] 2R_15790676_SNP [dm6]	T	G	4.439e^-4	0.909	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	9455168	2R_9455168_SNP [dm3] 2R_13567663_SNP [dm6]	G	C	4.443e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	10441770	2L_10441770_SNP [dm3] 2L_10441770_SNP [dm6]	T	G	4.450e^-4	0.909	UPSTREAM loh DOWNSTREAM CR45375 & 1 other INTERGENIC
2R	9145190	2R_9145190_SNP [dm3] 2R_13257685_SNP [dm6]	T	C	4.455e^-4	0.909	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
3R	7889385	3R_7889385_SNP [dm3] 3R_12063663_SNP [dm6]	T	A	4.468e^-4	0.909	UPSTREAM CG14740 INTERGENIC
X	12436814	X_12436814_SNP [dm3] X_12542781_SNP [dm6]	C	T	4.474e^-4	0.909	INTRON CG43921
X	19077403	X_19077403_SNP [dm3] X_19183370_SNP [dm6]	T	G	4.479e^-4	0.909	UPSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12197360	3L_12197360_SNP [dm3] 3L_12204260_SNP [dm6]	T	A	4.484e^-4	0.909	UTR_3_PRIME CG5626 UPSTREAM Adk1
3L	15479305	3L_15479305_INS [dm3] 3L_15486205_INS [dm6]	T	TTAAAACATTT...	4.494e^-4	0.909	UPSTREAM Ran-like INTERGENIC
2L	16596920	2L_16596920_SNP [dm3] 2L_16596920_SNP [dm6]	T	A	4.497e^-4	0.909	INTRON CG42389	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23474772	3R_23474772_SNP [dm3] 3R_27649050_SNP [dm6]	C	T	4.504e^-4	0.909	SYNONYMOUS_CODING tau INTRON tau
3R	2689982	3R_2689982_SNP [dm3] 3R_6864260_SNP [dm6]	G	C	4.511e^-4	0.909	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	8374678	3L_8374678_SNP [dm3] 3L_8381578_SNP [dm6]	G	A	4.511e^-4	0.909	INTRON ImpE1
2R	4225144	2R_4225144_SNP [dm3] 2R_8337639_SNP [dm6]	G	T	4.512e^-4	0.909	INTRON pdm3
2R	4225146	2R_4225146_SNP [dm3] 2R_8337641_SNP [dm6]	C	T	4.512e^-4	0.909	INTRON pdm3
2R	9455303	2R_9455303_SNP [dm3] 2R_13567798_SNP [dm6]	C	G	4.518e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
X	11297834	X_11297834_INS [dm3] X_11403801_INS [dm6]	G	GAG	4.527e^-4	0.909	DOWNSTREAM dlg1 INTRON dlg1
3R	10733324	3R_10733324_SNP [dm3] 3R_14907602_SNP [dm6]	T	C	4.529e^-4	0.909	INTERGENIC
3R	24505182	3R_24505182_SNP [dm3] 3R_28679460_SNP [dm6]	A	G	4.548e^-4	0.909	INTRON CG9990
3R	25949710	3R_25949710_DEL [dm3] 3R_30123988_DEL [dm6]	TTAACATATT	T	4.551e^-4	0.909	UPSTREAM CG45072 INTRON CG45073
2R	15567894	2R_15567894_SNP [dm3] 2R_19680389_SNP [dm6]	A	G	4.554e^-4	0.909	DOWNSTREAM CG15127 INTERGENIC
3R	500038	3R_500038_SNP [dm3] 3R_4674316_SNP [dm6]	T	G	4.554e^-4	0.909	INTRON CG43427 EXON CR44157
3R	5138822	3R_5138822_SNP [dm3] 3R_9313100_SNP [dm6]	A	G	4.556e^-4	0.909	INTRON CG8861	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15354580	2L_15354580_SNP [dm3] 2L_15354580_SNP [dm6]	T	C	4.564e^-4	0.909	INTERGENIC
3R	21300478	3R_21300478_SNP [dm3] 3R_25474756_SNP [dm6]	T	C	4.573e^-4	0.909	SYNONYMOUS_CODING Vps33B DOWNSTREAM CG4553	TF binding site mE1_TFBS_sens
3L	13980976	3L_13980976_SNP [dm3] 3L_13987876_SNP [dm6]	A	G	4.574e^-4	0.909	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
X	5532992	X_5532992_SNP [dm3] X_5638959_SNP [dm6]	T	C	4.585e^-4	0.909	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22548580	3R_22548580_SNP [dm3] 3R_26722858_SNP [dm6]	A	G	4.587e^-4	0.909	SPLICE_SITE_REGION CG6420 INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9168099	X_9168099_SNP [dm3] X_9274066_SNP [dm6]	A	G	4.602e^-4	0.909	NON_SYNONYMOUS_CODING CG16892 UPSTREAM snoRNA:CG16892-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	19060813	3R_19060813_DEL [dm3] 3R_23235091_DEL [dm6]	TT	T	4.604e^-4	0.909	INTRON CG4467
2R	20265772	2R_20265772_SNP [dm3] 2R_24378249_SNP [dm6]	C	T	4.606e^-4	0.909	SPLICE_SITE_REGION CG13578 SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
2R	12231895	2R_12231895_DEL [dm3] 2R_16344390_DEL [dm6]	ATTTAAAA	A	4.614e^-4	0.909	UTR_5_PRIME Nup62 UPSTREAM Nup62 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
3R	12933449	3R_12933449_SNP [dm3] 3R_17107727_SNP [dm6]	A	G	4.617e^-4	0.909	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23560286	3R_23560286_SNP [dm3] 3R_27734564_SNP [dm6]	G	A	4.630e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3896103	2L_3896103_SNP [dm3] 2L_3896103_SNP [dm6]	C	A	4.632e^-4	0.909	UTR_5_PRIME capu INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13665003	2L_13665003_INS [dm3] 2L_13665003_INS [dm6]	T	TGGGTATTTTATTT...	4.637e^-4	0.909	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23474544	3R_23474544_SNP [dm3] 3R_27648822_SNP [dm6]	G	T	4.643e^-4	0.909	SYNONYMOUS_CODING tau INTRON tau
3L	10367673	3L_10367673_INS [dm3] 3L_10374573_INS [dm6]	T	TT	4.648e^-4	0.909	INTERGENIC
3L	3764389	3L_3764389_SNP [dm3] 3L_3764389_SNP [dm6]	G	A	4.652e^-4	0.909	INTRON CG32264
3L	10693026	3L_10693026_SNP [dm3] 3L_10699926_SNP [dm6]	C	T	4.662e^-4	0.909	INTERGENIC
2R	7944368	2R_7944368_SNP [dm3] 2R_12056863_SNP [dm6]	G	C	4.668e^-4	0.909	DOWNSTREAM CG44314 INTRON Drep-3
3R	12932510	3R_12932510_SNP [dm3] 3R_17106788_SNP [dm6]	A	T	4.669e^-4	0.909	SYNONYMOUS_CODING cher INTRON cher	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2382549	3L_2382549_SNP [dm3] 3L_2382549_SNP [dm6]	T	C	4.678e^-4	0.909	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17374192	2R_17374192_SNP [dm3] 2R_21486687_SNP [dm6]	T	C	4.699e^-4	0.909	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA
3R	17284484	3R_17284484_SNP [dm3] 3R_21458762_SNP [dm6]	C	T	4.699e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11333430	2R_11333430_SNP [dm3] 2R_15445925_SNP [dm6]	A	T	4.707e^-4	0.909	INTRON CG43729
2L	16596828	2L_16596828_SNP [dm3] 2L_16596828_SNP [dm6]	T	G	4.726e^-4	0.909	INTRON CG42389	TF binding site BDTNP1_TFBS_twi
3L	7737310	3L_7737310_SNP [dm3] 3L_7744210_SNP [dm6]	T	C	4.732e^-4	0.909	INTRON CG32373
2R	8638671	2R_8638671_SNP [dm3] 2R_12751166_SNP [dm6]	A	T	4.736e^-4	0.909	UTR_3_PRIME CG42663 DOWNSTREAM mos
2R	14204641	2R_14204641_SNP [dm3] 2R_18317136_SNP [dm6]	C	T	4.738e^-4	0.909	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21055957	X_21055957_SNP [dm3] X_21184930_SNP [dm6]	A	G	4.742e^-4	0.909	INTERGENIC
X	568495	X_568495_SNP [dm3] X_674462_SNP [dm6]	C	T	4.751e^-4	0.909	INTERGENIC
2R	9830153	2R_9830153_SNP [dm3] 2R_13942648_SNP [dm6]	G	A	4.752e^-4	0.909	SYNONYMOUS_CODING DJ-1alpha UPSTREAM shot DOWNSTREAM AGO1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_ttk
3L	11250606	3L_11250606_SNP [dm3] 3L_11257506_SNP [dm6]	A	G	4.757e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15365121	3R_15365121_SNP [dm3] 3R_19539399_SNP [dm6]	G	A	4.763e^-4	0.909	INTRON Dys
3L	11020643	3L_11020643_SNP [dm3] 3L_11027543_SNP [dm6]	C	T	4.763e^-4	0.909	UPSTREAM CG32081 DOWNSTREAM CG32079 INTERGENIC
X	5804644	X_5804644_SNP [dm3] X_5910611_SNP [dm6]	A	G	4.763e^-4	0.909	SYNONYMOUS_CODING CG12236 INTRON CG12236
2R	15979607	2R_15979607_SNP [dm3] 2R_20092102_SNP [dm6]	C	T	4.778e^-4	0.909	DOWNSTREAM CR44633 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21055903	X_21055903_SNP [dm3] X_21184876_SNP [dm6]	G	C	4.789e^-4	0.909	INTERGENIC
X	21055936	X_21055936_MNP [dm3] X_21184909_MNP [dm6]	TGGA	CCTG	4.789e^-4	0.909	INTERGENIC
3R	16080296	3R_16080296_SNP [dm3] 3R_20254574_SNP [dm6]	C	T	4.795e^-4	0.909	INTRON cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6293209	2L_6293209_SNP [dm3] 2L_6293209_SNP [dm6]	A	G	4.801e^-4	0.909	INTRON Ddr
2R	13179461	2R_13179461_SNP [dm3] 2R_17291956_SNP [dm6]	C	G	4.802e^-4	0.909	INTRON mbl
X	11398291	X_11398291_SNP [dm3] X_11504258_SNP [dm6]	T	A	4.803e^-4	0.909	INTRON Drak
2L	2717062	2L_2717062_SNP [dm3] 2L_2717062_SNP [dm6]	G	A	4.809e^-4	0.909	INTRON CG31690
3L	6831680	3L_6831680_SNP [dm3] 3L_6838580_SNP [dm6]	A	C	4.813e^-4	0.909	INTERGENIC
2R	2448095	2R_2448095_SNP [dm3] 2R_6560590_SNP [dm6]	G	A	4.819e^-4	0.909	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	3211494	2L_3211494_SNP [dm3] 2L_3211494_SNP [dm6]	C	T	4.821e^-4	0.909	DOWNSTREAM CR45336 INTERGENIC
2R	14422001	2R_14422001_SNP [dm3] 2R_18534496_SNP [dm6]	G	C	4.823e^-4	0.909	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
2R	20589899	2R_20589899_INS [dm3] 2R_24702376_INS [dm6]	T	TC	4.825e^-4	0.909	INTRON Mid1
3R	23111622	3R_23111622_SNP [dm3] 3R_27285900_SNP [dm6]	C	T	4.836e^-4	0.909	NON_SYNONYMOUS_CODING CG3368
2R	17600282	2R_17600282_SNP [dm3] 2R_21712777_SNP [dm6]	C	A	4.837e^-4	0.909	UPSTREAM HmgD INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14962052	X_14962052_SNP [dm3] X_15068019_SNP [dm6]	T	C	4.839e^-4	0.909	SYNONYMOUS_CODING dob
2R	7767067	2R_7767067_SNP [dm3] 2R_11879562_SNP [dm6]	A	C	4.848e^-4	0.909	SYNONYMOUS_CODING CG13185
3R	23283753	3R_23283753_DEL [dm3] 3R_27458031_DEL [dm6]	AACCGAAAA	A	4.853e^-4	0.909	INTERGENIC
X	9686130	X_9686130_SNP [dm3] X_9792097_SNP [dm6]	G	C	4.862e^-4	0.909	INTRON CG32698
3R	9390347	3R_9390347_SNP [dm3] 3R_13564625_SNP [dm6]	G	T	4.866e^-4	0.909	INTERGENIC
3R	9385645	3R_9385645_SNP [dm3] 3R_13559923_SNP [dm6]	A	T	4.868e^-4	0.909	INTERGENIC
2L	4708450	2L_4708450_SNP [dm3] 2L_4708450_SNP [dm6]	G	C	4.876e^-4	0.909	INTRON CG34351
3R	9390048	3R_9390048_SNP [dm3] 3R_13564326_SNP [dm6]	T	A	4.879e^-4	0.909	INTERGENIC
2L	7759935	2L_7759935_SNP [dm3] 2L_7759935_SNP [dm6]	T	C	4.879e^-4	0.909	INTRON CG7196
3L	1496814	3L_1496814_SNP [dm3] 3L_1496814_SNP [dm6]	A	T	4.882e^-4	0.909	UPSTREAM CG12084 DOWNSTREAM pUf68 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8477836	3R_8477836_SNP [dm3] 3R_12652114_SNP [dm6]	C	A	4.884e^-4	0.909	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	9393442	3R_9393442_SNP [dm3] 3R_13567720_SNP [dm6]	T	A	4.894e^-4	0.909	INTERGENIC
3R	24283271	3R_24283271_SNP [dm3] 3R_28457549_SNP [dm6]	A	G	4.900e^-4	0.909	INTRON beat-VI
3R	15291803	3R_15291803_SNP [dm3] 3R_19466081_SNP [dm6]	T	A	4.902e^-4	0.909	INTRON Dys
3R	2661718	3R_2661718_SNP [dm3] 3R_6835996_SNP [dm6]	C	T	4.911e^-4	0.909	INTRON Scr	regulatory region REDfly_CRMs
3L	13383313	3L_13383313_SNP [dm3] 3L_13390213_SNP [dm6]	A	T	4.915e^-4	0.909	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3423928	X_3423928_SNP [dm3] X_3529895_SNP [dm6]	T	A	4.926e^-4	0.909	INTRON CG32791
3R	23540043	3R_23540043_SNP [dm3] 3R_27714321_SNP [dm6]	G	T	4.929e^-4	0.909	INTERGENIC
X	21056264	X_21056264_SNP [dm3] X_21185237_SNP [dm6]	G	A	4.931e^-4	0.909	INTERGENIC
X	2828794	X_2828794_SNP [dm3] X_2934761_SNP [dm6]	A	T	4.931e^-4	0.909	UPSTREAM CG3592 INTRON kirre
3R	493504	3R_493504_SNP [dm3] 3R_4667782_SNP [dm6]	G	A	4.938e^-4	0.909	INTRON CG43427
2L	4385439	2L_4385439_SNP [dm3] 2L_4385439_SNP [dm6]	A	G	4.938e^-4	0.909	SYNONYMOUS_CODING CG3338 DOWNSTREAM Psf2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.358e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.4833	0.0032

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2011 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	1.107e^-6	0.808	INTRON plum
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	1.358e^-6	0.808	INTRON Rh7
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	2.054e^-6	0.808	INTRON Rh7
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	2.555e^-6	0.808	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	3.211e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	3.371e^-6	0.808	INTERGENIC
3R	24821956	3R_24821956_SNP [dm3] 3R_28996234_SNP [dm6]	C	T	3.519e^-6	0.808	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	3.590e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15940976	2L_15940976_SNP [dm3] 2L_15940976_SNP [dm6]	G	A	4.637e^-6	0.808	UPSTREAM CG12448 INTRON beat-Ib
3L	11005187	3L_11005187_INS [dm3] 3L_11012087_INS [dm6]	T	TT	4.704e^-6	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	18609507	2R_18609507_SNP [dm3] 2R_22722002_SNP [dm6]	C	T	5.758e^-6	0.808	SYNONYMOUS_CODING jbug DOWNSTREAM jbug
X	10795411	X_10795411_SNP [dm3] X_10901378_SNP [dm6]	T	C	6.088e^-6	0.808	NON_SYNONYMOUS_CODING CG15208
3R	19324274	3R_19324274_SNP [dm3] 3R_23498552_SNP [dm6]	G	A	7.077e^-6	0.808	INTERGENIC
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	8.976e^-6	0.808	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22328023	3R_22328023_SNP [dm3] 3R_26502301_SNP [dm6]	T	A	1.005e^-5	0.808	INTRON plum
X	2177439	X_2177439_SNP [dm3] X_2283406_SNP [dm6]	G	C	1.023e^-5	0.808	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	1.062e^-5	0.808	INTRON GlcAT-P
2R	18609492	2R_18609492_SNP [dm3] 2R_22721987_SNP [dm6]	G	A	1.094e^-5	0.808	SYNONYMOUS_CODING jbug DOWNSTREAM jbug
3L	11177866	3L_11177866_SNP [dm3] 3L_11184766_SNP [dm6]	G	T	1.147e^-5	0.808	INTRON GlcAT-P
3R	19590175	3R_19590175_SNP [dm3] 3R_23764453_SNP [dm6]	G	T	1.161e^-5	0.808	SYNONYMOUS_CODING Lsd-1 START_GAINED Lsd-1 UTR_5_PRIME Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	1.173e^-5	0.808	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11178750	3L_11178750_SNP [dm3] 3L_11185650_SNP [dm6]	T	C	1.217e^-5	0.808	INTRON GlcAT-P
3R	24702653	3R_24702653_SNP [dm3] 3R_28876931_SNP [dm6]	G	A	1.235e^-5	0.808	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18887336	3L_18887336_SNP [dm3] 3L_18894236_SNP [dm6]	A	C	1.259e^-5	0.808	DOWNSTREAM NijB INTRON CG3902
3L	19378294	3L_19378294_SNP [dm3] 3L_19385194_SNP [dm6]	A	G	1.259e^-5	0.808	INTRON CG32206
3R	15074808	3R_15074808_SNP [dm3] 3R_19249086_SNP [dm6]	T	C	1.277e^-5	0.808	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3R	7033012	3R_7033012_SNP [dm3] 3R_11207290_SNP [dm6]	G	A	1.300e^-5	0.808	INTRON cu
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	1.306e^-5	0.808	SYNONYMOUS_CODING msps
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	1.332e^-5	0.808	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	1.369e^-5	0.808	INTRON CG14877
2L	2767296	2L_2767296_SNP [dm3] 2L_2767296_SNP [dm6]	A	C	1.370e^-5	0.808	UTR_3_PRIME Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	8470913	X_8470913_SNP [dm3] X_8576880_SNP [dm6]	T	A	1.383e^-5	0.808	INTRON CG12065
3R	24819100	3R_24819100_SNP [dm3] 3R_28993378_SNP [dm6]	G	A	1.454e^-5	0.808	INTRON wat	TF binding site mE1_TFBS_HSA
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	1.506e^-5	0.808	UPSTREAM CG15553 INTERGENIC
2R	13531220	2R_13531220_SNP [dm3] 2R_17643715_SNP [dm6]	C	T	1.510e^-5	0.808	INTERGENIC
2L	2389228	2L_2389228_SNP [dm3] 2L_2389228_SNP [dm6]	A	C	1.550e^-5	0.808	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2176674	X_2176674_SNP [dm3] X_2282641_SNP [dm6]	T	C	1.602e^-5	0.812	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10793863	2L_10793863_SNP [dm3] 2L_10793863_SNP [dm6]	C	T	1.731e^-5	0.826	INTRON CG31869
2R	17723163	2R_17723163_SNP [dm3] 2R_21835658_SNP [dm6]	G	A	1.769e^-5	0.826	SYNONYMOUS_CODING CG4377 UPSTREAM CG4363
3R	11883481	3R_11883481_SNP [dm3] 3R_16057759_SNP [dm6]	T	C	1.790e^-5	0.826	SYNONYMOUS_CODING msps
2R	12995127	2R_12995127_SNP [dm3] 2R_17107622_SNP [dm6]	G	A	1.995e^-5	0.826	DOWNSTREAM CG30456 INTERGENIC
2L	11191327	2L_11191327_SNP [dm3] 2L_11191327_SNP [dm6]	A	T	2.065e^-5	0.826	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	2.156e^-5	0.826	INTRON msps
X	2176660	X_2176660_SNP [dm3] X_2282627_SNP [dm6]	T	G	2.243e^-5	0.826	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	2.265e^-5	0.826	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	13978203	3L_13978203_SNP [dm3] 3L_13985103_SNP [dm6]	T	A	2.298e^-5	0.826	INTRON CG17364	TF binding site mE1_TFBS_cad
2R	7453771	2R_7453771_SNP [dm3] 2R_11566266_SNP [dm6]	G	T	2.465e^-5	0.826	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	7033291	3R_7033291_SNP [dm3] 3R_11207569_SNP [dm6]	C	T	2.500e^-5	0.826	SYNONYMOUS_CODING cu
3L	517044	3L_517044_SNP [dm3] 3L_517044_SNP [dm6]	G	C	2.573e^-5	0.826	INTRON klar
3R	11882674	3R_11882674_SNP [dm3] 3R_16056952_SNP [dm6]	A	T	2.655e^-5	0.826	INTRON msps
X	4291440	X_4291440_SNP [dm3] X_4397407_SNP [dm6]	A	C	2.711e^-5	0.826	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	2.753e^-5	0.826	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11656813	3L_11656813_SNP [dm3] 3L_11663713_SNP [dm6]	A	C	2.807e^-5	0.826	INTRON CG32085	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	2.817e^-5	0.826	INTRON vir-1
3L	11004941	3L_11004941_SNP [dm3] 3L_11011841_SNP [dm6]	T	G	2.876e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	435921	2L_435921_SNP [dm3] 2L_435921_SNP [dm6]	G	A	2.907e^-5	0.826	INTRON ex	TF binding site mE1_TFBS_chinmo
3R	7033025	3R_7033025_SNP [dm3] 3R_11207303_SNP [dm6]	G	T	2.973e^-5	0.826	INTRON cu
3R	16846472	3R_16846472_SNP [dm3] 3R_21020750_SNP [dm6]	A	G	3.020e^-5	0.826	UTR_3_PRIME Rlip DOWNSTREAM CG17278
2R	17686907	2R_17686907_SNP [dm3] 2R_21799402_SNP [dm6]	C	T	3.051e^-5	0.826	UTR_3_PRIME CG4386 UPSTREAM CG18735
3L	13978200	3L_13978200_SNP [dm3] 3L_13985100_SNP [dm6]	G	C	3.191e^-5	0.826	INTRON CG17364	TF binding site mE1_TFBS_cad
3R	20119116	3R_20119116_SNP [dm3] 3R_24293394_SNP [dm6]	A	G	3.194e^-5	0.826	UTR_3_PRIME CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_sens
3R	23476429	3R_23476429_SNP [dm3] 3R_27650707_SNP [dm6]	C	T	3.238e^-5	0.826	UTR_5_PRIME tau DOWNSTREAM tau INTRON tau
3L	6987531	3L_6987531_SNP [dm3] 3L_6994431_SNP [dm6]	A	T	3.284e^-5	0.826	UTR_3_PRIME bin	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11751055	3R_11751055_SNP [dm3] 3R_15925333_SNP [dm6]	G	T	3.361e^-5	0.826	UPSTREAM CG34276 INTRON CG4221
X	2443401	X_2443401_DEL [dm3] X_2549368_DEL [dm6]	TCCAATTA	T	3.380e^-5	0.826	INTERGENIC
2L	12411891	2L_12411891_SNP [dm3] 2L_12411891_SNP [dm6]	G	A	3.420e^-5	0.826	INTRON vir-1
3L	13466794	3L_13466794_SNP [dm3] 3L_13473694_SNP [dm6]	G	C	3.442e^-5	0.826	INTRON CG10089
3L	14648606	3L_14648606_SNP [dm3] 3L_14655506_SNP [dm6]	G	A	3.506e^-5	0.826	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11882771	3R_11882771_SNP [dm3] 3R_16057049_SNP [dm6]	G	C	3.562e^-5	0.826	INTRON msps
2L	7226594	2L_7226594_DEL [dm3] 2L_7226594_DEL [dm6]	GG	G	3.568e^-5	0.826	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	3.651e^-5	0.826	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2767411	2L_2767411_SNP [dm3] 2L_2767411_SNP [dm6]	A	G	3.674e^-5	0.826	SYNONYMOUS_CODING Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	20052058	2R_20052058_SNP [dm3] 2R_24164535_SNP [dm6]	G	A	3.740e^-5	0.826	INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	24702186	3R_24702186_SNP [dm3] 3R_28876464_SNP [dm6]	A	G	3.781e^-5	0.826	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15043106	3L_15043106_SNP [dm3] 3L_15050006_SNP [dm6]	T	G	3.793e^-5	0.826	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta
3L	18878750	3L_18878750_SNP [dm3] 3L_18885650_SNP [dm6]	C	T	3.794e^-5	0.826	UPSTREAM CG3961 INTRON CG3961
3R	7032485	3R_7032485_SNP [dm3] 3R_11206763_SNP [dm6]	T	C	3.864e^-5	0.826	INTRON cu
3R	20714196	3R_20714196_SNP [dm3] 3R_24888474_SNP [dm6]	C	A	3.882e^-5	0.826	INTRON CG31121	TF binding site mE1_TFBS_cad
X	2177312	X_2177312_SNP [dm3] X_2283279_SNP [dm6]	T	G	3.900e^-5	0.826	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3L	11015320	3L_11015320_INS [dm3] 3L_11022220_INS [dm6]	T	TT	3.942e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5004770	2L_5004770_SNP [dm3] 2L_5004770_SNP [dm6]	A	T	3.945e^-5	0.826	UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	11945356	3R_11945356_SNP [dm3] 3R_16119634_SNP [dm6]	A	T	4.011e^-5	0.826	INTRON Sb
3R	20263372	3R_20263372_SNP [dm3] 3R_24437650_SNP [dm6]	A	G	4.051e^-5	0.826	INTRON nAChRalpha1	TF binding site BDTNP1_TFBS_hb
3R	11882689	3R_11882689_SNP [dm3] 3R_16056967_SNP [dm6]	T	A	4.073e^-5	0.826	INTRON msps
2R	12810415	2R_12810415_SNP [dm3] 2R_16922910_SNP [dm6]	T	C	4.104e^-5	0.826	INTERGENIC
2R	12810421	2R_12810421_SNP [dm3] 2R_16922916_SNP [dm6]	T	A	4.120e^-5	0.826	INTERGENIC
2L	2767212	2L_2767212_SNP [dm3] 2L_2767212_SNP [dm6]	T	C	4.157e^-5	0.826	UTR_3_PRIME aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14949623	3R_14949623_SNP [dm3] 3R_19123901_SNP [dm6]	G	A	4.186e^-5	0.826	INTRON CG6040
2L	850526	2L_850526_SNP [dm3] 2L_850526_SNP [dm6]	T	A	4.188e^-5	0.826	START_GAINED drongo UTR_5_PRIME drongo UPSTREAM CR44060 DOWNSTREAM CG4291	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2919910	2L_2919910_SNP [dm3] 2L_2919910_SNP [dm6]	C	T	4.267e^-5	0.826	INTRON lilli
3R	3825724	3R_3825724_INS [dm3] 3R_8000002_INS [dm6]	T	TA	4.269e^-5	0.826	UTR_5_PRIME CG14463 UPSTREAM CG14463 DOWNSTREAM Kmn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11398924	2L_11398924_SNP [dm3] 2L_11398924_SNP [dm6]	T	A	4.392e^-5	0.826	INTERGENIC	regulatory region REDfly_CRMs
3L	1595576	3L_1595576_SNP [dm3] 3L_1595576_SNP [dm6]	C	T	4.554e^-5	0.826	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24947353	3R_24947353_SNP [dm3] 3R_29121631_SNP [dm6]	G	T	4.556e^-5	0.826	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	4667510	3R_4667510_SNP [dm3] 3R_8841788_SNP [dm6]	T	A	4.567e^-5	0.826	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24977657	3R_24977657_SNP [dm3] 3R_29151935_SNP [dm6]	A	T	4.570e^-5	0.826	UPSTREAM ligatin DOWNSTREAM Slbp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7033438	3R_7033438_SNP [dm3] 3R_11207716_SNP [dm6]	C	T	4.581e^-5	0.826	SYNONYMOUS_CODING cu
3R	11882758	3R_11882758_SNP [dm3] 3R_16057036_SNP [dm6]	C	A	4.612e^-5	0.826	INTRON msps
3R	20115330	3R_20115330_SNP [dm3] 3R_24289608_SNP [dm6]	G	A	4.617e^-5	0.826	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20115336	3R_20115336_SNP [dm3] 3R_24289614_SNP [dm6]	G	C	4.617e^-5	0.826	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10252856	2L_10252856_SNP [dm3] 2L_10252856_SNP [dm6]	G	T	4.651e^-5	0.826	SYNONYMOUS_CODING Ror
3R	11751072	3R_11751072_SNP [dm3] 3R_15925350_SNP [dm6]	A	G	4.682e^-5	0.826	UPSTREAM CG34276 INTRON CG4221
3L	21619953	3L_21619953_SNP [dm3] 3L_21626853_SNP [dm6]	A	G	4.687e^-5	0.826	INTRON CG11306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	18424584	3R_18424584_SNP [dm3] 3R_22598862_SNP [dm6]	G	T	4.689e^-5	0.826	INTRON Efa6	TF binding site mE1_TFBS_Trl
3R	7032497	3R_7032497_SNP [dm3] 3R_11206775_SNP [dm6]	T	A	4.719e^-5	0.826	INTRON cu
X	2176706	X_2176706_DEL [dm3] X_2282673_DEL [dm6]	CTATCGACGCCACAGAGACC...	C	4.744e^-5	0.826	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18824759	3L_18824759_SNP [dm3] 3L_18831659_SNP [dm6]	T	A	4.788e^-5	0.826	INTRON Indy
3L	15702261	3L_15702261_SNP [dm3] 3L_15709161_SNP [dm6]	C	A	4.906e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9272066	3L_9272066_SNP [dm3] 3L_9278966_SNP [dm6]	G	A	4.932e^-5	0.826	INTRON GluRIB
3R	19609197	3R_19609197_SNP [dm3] 3R_23783475_SNP [dm6]	G	C	4.940e^-5	0.826	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24702567	3R_24702567_SNP [dm3] 3R_28876845_SNP [dm6]	C	T	5.031e^-5	0.826	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14150000	3L_14150000_SNP [dm3] 3L_14156900_SNP [dm6]	T	C	5.041e^-5	0.826	INTERGENIC	regulatory region REDfly_CRMs
3L	6984833	3L_6984833_SNP [dm3] 3L_6991733_SNP [dm6]	C	A	5.062e^-5	0.826	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_chinmo
3R	26895330	3R_26895330_SNP [dm3] 3R_31069608_SNP [dm6]	T	C	5.177e^-5	0.826	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	13130821	3R_13130821_SNP [dm3] 3R_17305099_SNP [dm6]	G	T	5.234e^-5	0.826	INTERGENIC
3R	8208678	3R_8208678_SNP [dm3] 3R_12382956_SNP [dm6]	G	C	5.259e^-5	0.826	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11882770	3R_11882770_SNP [dm3] 3R_16057048_SNP [dm6]	T	A	5.285e^-5	0.826	INTRON msps
3R	21668127	3R_21668127_SNP [dm3] 3R_25842405_SNP [dm6]	A	T	5.347e^-5	0.826	NON_SYNONYMOUS_CODING alpha4GT2
3L	13978185	3L_13978185_SNP [dm3] 3L_13985085_SNP [dm6]	A	T	5.371e^-5	0.826	INTRON CG17364	TF binding site mE1_TFBS_cad
3R	11882859	3R_11882859_DEL [dm3] 3R_16057137_DEL [dm6]	TCTTCTACCGT...	T	5.391e^-5	0.826	INTRON msps
3L	8739363	3L_8739363_SNP [dm3] 3L_8746263_SNP [dm6]	A	T	5.408e^-5	0.826	UPSTREAM Prm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	12157189	2L_12157189_SNP [dm3] 2L_12157189_SNP [dm6]	A	C	5.410e^-5	0.826	INTRON CG31760
3L	6630176	3L_6630176_DEL [dm3] 3L_6637076_DEL [dm6]	AGCACTTTGATTT...	A	5.418e^-5	0.826	INTERGENIC
3L	9142650	3L_9142650_SNP [dm3] 3L_9149550_SNP [dm6]	A	T	5.619e^-5	0.835	UTR_3_PRIME Rdl
3L	18868086	3L_18868086_SNP [dm3] 3L_18874986_SNP [dm6]	C	T	5.690e^-5	0.835	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	5.726e^-5	0.835	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6973440	3R_6973440_SNP [dm3] 3R_11147718_SNP [dm6]	T	C	5.788e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7033253	3R_7033253_SNP [dm3] 3R_11207531_SNP [dm6]	T	C	5.829e^-5	0.835	INTRON cu
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	5.843e^-5	0.835	INTRON 4EHP
X	13720092	X_13720092_SNP [dm3] X_13826059_SNP [dm6]	T	G	5.869e^-5	0.835	UTR_3_PRIME jub DOWNSTREAM jub & 1 other
2L	12912442	2L_12912442_SNP [dm3] 2L_12912442_SNP [dm6]	T	A	5.893e^-5	0.835	UPSTREAM ACXC INTERGENIC
3R	25046304	3R_25046304_SNP [dm3] 3R_29220582_SNP [dm6]	G	A	5.953e^-5	0.835	SPLICE_SITE_REGION Ef1gamma DOWNSTREAM CR31044 INTRON Ef1gamma	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19325159	3R_19325159_SNP [dm3] 3R_23499437_SNP [dm6]	G	A	5.962e^-5	0.835	INTERGENIC
X	14752040	X_14752040_SNP [dm3] X_14858007_SNP [dm6]	A	C	6.024e^-5	0.835	INTRON Flo2
2R	14985592	2R_14985592_SNP [dm3] 2R_19098087_SNP [dm6]	T	G	6.047e^-5	0.835	INTRON 5-HT1A
3R	7035761	3R_7035761_SNP [dm3] 3R_11210039_SNP [dm6]	T	G	6.088e^-5	0.835	UPSTREAM Tctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24821101	3R_24821101_SNP [dm3] 3R_28995379_SNP [dm6]	A	G	6.098e^-5	0.835	SPLICE_SITE_REGION wat INTRON wat
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	6.201e^-5	0.838	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2R	12995128	2R_12995128_SNP [dm3] 2R_17107623_SNP [dm6]	A	C	6.250e^-5	0.838	DOWNSTREAM CG30456 INTERGENIC
3R	4666107	3R_4666107_SNP [dm3] 3R_8840385_SNP [dm6]	T	G	6.284e^-5	0.838	NON_SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18609243	2R_18609243_SNP [dm3] 2R_22721738_SNP [dm6]	C	T	6.302e^-5	0.838	NON_SYNONYMOUS_CODING jbug DOWNSTREAM jbug	TF binding site mE1_TFBS_cad
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	6.396e^-5	0.843	SYNONYMOUS_CODING msps
2R	17768964	2R_17768964_SNP [dm3] 2R_21881459_SNP [dm6]	C	T	6.477e^-5	0.843	UTR_3_PRIME PpN58A INTRON Fili
3L	11000898	3L_11000898_SNP [dm3] 3L_11007798_SNP [dm6]	A	T	6.505e^-5	0.843	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14501241	2L_14501241_SNP [dm3] 2L_14501241_SNP [dm6]	G	A	6.715e^-5	0.843	INTERGENIC
3L	18830026	3L_18830026_SNP [dm3] 3L_18836926_SNP [dm6]	A	T	6.717e^-5	0.843	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17794131	3R_17794131_SNP [dm3] 3R_21968409_SNP [dm6]	T	C	6.741e^-5	0.843	INTRON Eip93F
3R	7064182	3R_7064182_SNP [dm3] 3R_11238460_SNP [dm6]	C	G	6.757e^-5	0.843	SYNONYMOUS_CODING CG31388 DOWNSTREAM CG31441	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2767253	2L_2767253_SNP [dm3] 2L_2767253_SNP [dm6]	T	A	6.765e^-5	0.843	UTR_3_PRIME aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18413547	3L_18413547_SNP [dm3] 3L_18420447_SNP [dm6]	A	T	6.924e^-5	0.843	INTERGENIC
3L	15287551	3L_15287551_SNP [dm3] 3L_15294451_SNP [dm6]	T	A	6.957e^-5	0.843	INTERGENIC
3L	17815482	3L_17815482_SNP [dm3] 3L_17822382_SNP [dm6]	A	C	7.033e^-5	0.843	UPSTREAM Grd INTRON Ir75c
3R	11882834	3R_11882834_SNP [dm3] 3R_16057112_SNP [dm6]	A	G	7.065e^-5	0.843	INTRON msps
2R	12810422	2R_12810422_SNP [dm3] 2R_16922917_SNP [dm6]	A	G	7.068e^-5	0.843	INTERGENIC
3L	1726919	3L_1726919_SNP [dm3] 3L_1726919_SNP [dm6]	A	C	7.070e^-5	0.843	INTRON drpr
2R	19393610	2R_19393610_SNP [dm3] 2R_23506087_SNP [dm6]	G	A	7.074e^-5	0.843	DOWNSTREAM CR43794 INTERGENIC
3R	19464883	3R_19464883_SNP [dm3] 3R_23639161_SNP [dm6]	A	G	7.088e^-5	0.843	INTRON CG31145	TF binding site mE1_TFBS_inv
2R	17654395	2R_17654395_SNP [dm3] 2R_21766890_SNP [dm6]	C	T	7.129e^-5	0.843	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
2R	14985582	2R_14985582_SNP [dm3] 2R_19098077_SNP [dm6]	A	T	7.185e^-5	0.843	INTRON 5-HT1A
2L	12157213	2L_12157213_SNP [dm3] 2L_12157213_SNP [dm6]	G	C	7.193e^-5	0.843	INTRON CG31760
2R	17653420	2R_17653420_SNP [dm3] 2R_21765915_SNP [dm6]	A	C	7.280e^-5	0.848	UPSTREAM CR43984 INTRON CG30395
3L	16739132	3L_16739132_SNP [dm3] 3L_16746032_SNP [dm6]	G	A	7.434e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	7.516e^-5	0.848	INTERGENIC
3R	11882856	3R_11882856_SNP [dm3] 3R_16057134_SNP [dm6]	T	A	7.613e^-5	0.848	INTRON msps
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	7.620e^-5	0.848	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	12811066	2R_12811066_DEL [dm3] 2R_16923561_DEL [dm6]	GT	A	7.623e^-5	0.848	INTERGENIC
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	7.630e^-5	0.848	INTRON Eip63E
3R	12627911	3R_12627911_SNP [dm3] 3R_16802189_SNP [dm6]	G	A	7.635e^-5	0.848	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17055298	3L_17055298_SNP [dm3] 3L_17062198_SNP [dm6]	A	G	7.739e^-5	0.848	UTR_3_PRIME Rbp6
3R	12629529	3R_12629529_SNP [dm3] 3R_16803807_SNP [dm6]	A	T	7.747e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12157195	2L_12157195_SNP [dm3] 2L_12157195_SNP [dm6]	C	A	7.778e^-5	0.848	INTRON CG31760
2R	12812876	2R_12812876_SNP [dm3] 2R_16925371_SNP [dm6]	T	C	7.780e^-5	0.848	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	7.916e^-5	0.853	INTERGENIC
2L	4420418	2L_4420418_SNP [dm3] 2L_4420418_SNP [dm6]	T	G	7.989e^-5	0.853	INTRON CG15431
3L	11177828	3L_11177828_SNP [dm3] 3L_11184728_SNP [dm6]	A	T	8.066e^-5	0.853	INTRON GlcAT-P
3R	24702319	3R_24702319_SNP [dm3] 3R_28876597_SNP [dm6]	G	A	8.127e^-5	0.853	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
3R	24702337	3R_24702337_SNP [dm3] 3R_28876615_SNP [dm6]	G	A	8.127e^-5	0.853	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
2R	19893723	2R_19893723_SNP [dm3] 2R_24006200_SNP [dm6]	A	G	8.256e^-5	0.853	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6489879	X_6489879_SNP [dm3] X_6595846_SNP [dm6]	G	C	8.317e^-5	0.853	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6273662	3R_6273662_INS [dm3] 3R_10447940_INS [dm6]	C	CC	8.384e^-5	0.853	INTERGENIC
3R	12627921	3R_12627921_SNP [dm3] 3R_16802199_SNP [dm6]	A	T	8.414e^-5	0.853	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12625756	3R_12625756_SNP [dm3] 3R_16800034_SNP [dm6]	C	A	8.437e^-5	0.853	UPSTREAM CR45750 INTERGENIC
3R	4205289	3R_4205289_SNP [dm3] 3R_8379567_SNP [dm6]	T	A	8.443e^-5	0.853	INTRON CG45263
3R	7032889	3R_7032889_SNP [dm3] 3R_11207167_SNP [dm6]	G	C	8.459e^-5	0.853	INTRON cu
3R	1956565	3R_1956565_SNP [dm3] 3R_6130843_SNP [dm6]	T	A	8.513e^-5	0.853	INTERGENIC
X	4291434	X_4291434_SNP [dm3] X_4397401_SNP [dm6]	A	C	8.636e^-5	0.853	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14441403	3L_14441403_SNP [dm3] 3L_14448303_SNP [dm6]	A	G	8.649e^-5	0.853	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	17690539	3L_17690539_SNP [dm3] 3L_17697439_SNP [dm6]	T	C	8.661e^-5	0.853	INTRON Ccn
3R	8209974	3R_8209974_SNP [dm3] 3R_12384252_SNP [dm6]	T	A	8.682e^-5	0.853	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1631816	2L_1631816_SNP [dm3] 2L_1631816_SNP [dm6]	C	T	8.718e^-5	0.853	INTERGENIC
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	8.724e^-5	0.853	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	17380223	2R_17380223_SNP [dm3] 2R_21492718_SNP [dm6]	A	C	8.736e^-5	0.853	INTRON Fkbp14
3R	25627213	3R_25627213_SNP [dm3] 3R_29801491_SNP [dm6]	T	C	8.841e^-5	0.858	UTR_3_PRIME Ice DOWNSTREAM CG7834
2L	10793835	2L_10793835_SNP [dm3] 2L_10793835_SNP [dm6]	A	C	8.876e^-5	0.858	INTRON CG31869
3R	26895368	3R_26895368_SNP [dm3] 3R_31069646_SNP [dm6]	T	A	8.943e^-5	0.858	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	8795991	3R_8795991_SNP [dm3] 3R_12970269_SNP [dm6]	G	A	9.011e^-5	0.858	INTRON CG7381	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5813392	2L_5813392_SNP [dm3] 2L_5813392_SNP [dm6]	C	T	9.048e^-5	0.858	INTERGENIC
3L	8548330	3L_8548330_SNP [dm3] 3L_8555230_SNP [dm6]	G	T	9.062e^-5	0.858	INTRON rhea
3R	12604996	3R_12604996_SNP [dm3] 3R_16779274_SNP [dm6]	G	T	9.105e^-5	0.858	INTERGENIC
3L	18922850	3L_18922850_SNP [dm3] 3L_18929750_SNP [dm6]	T	C	9.272e^-5	0.862	INTRON CG32204
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	9.311e^-5	0.862	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
3R	16696182	3R_16696182_SNP [dm3] 3R_20870460_SNP [dm6]	A	T	9.380e^-5	0.862	UPSTREAM TotA INTERGENIC
3R	24727114	3R_24727114_SNP [dm3] 3R_28901392_SNP [dm6]	C	T	9.390e^-5	0.862	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16488814	3R_16488814_SNP [dm3] 3R_20663092_SNP [dm6]	A	G	9.449e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11178271	3L_11178271_SNP [dm3] 3L_11185171_SNP [dm6]	A	T	9.451e^-5	0.862	INTRON GlcAT-P
3L	11178047	3L_11178047_SNP [dm3] 3L_11184947_SNP [dm6]	T	G	9.465e^-5	0.862	INTRON GlcAT-P
3R	19324358	3R_19324358_SNP [dm3] 3R_23498636_SNP [dm6]	C	A	9.653e^-5	0.862	INTERGENIC
2L	15950895	2L_15950895_INS [dm3] 2L_15950895_INS [dm6]	G	GTATGTG	9.671e^-5	0.862	INTRON beat-Ib
2L	16389889	2L_16389889_SNP [dm3] 2L_16389889_SNP [dm6]	A	T	9.849e^-5	0.862	INTERGENIC
2L	7487979	2L_7487979_SNP [dm3] 2L_7487979_SNP [dm6]	A	G	9.883e^-5	0.862	INTRON Ziz
2R	19373412	2R_19373412_SNP [dm3] 2R_23485889_SNP [dm6]	G	T	9.919e^-5	0.862	INTRON CG43795
3L	19009632	3L_19009632_SNP [dm3] 3L_19016532_SNP [dm6]	A	C	9.929e^-5	0.862	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11398652	2L_11398652_SNP [dm3] 2L_11398652_SNP [dm6]	A	G	1.001e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3R	12683488	3R_12683488_SNP [dm3] 3R_16857766_SNP [dm6]	A	G	1.003e^-4	0.862	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	10286143	X_10286143_SNP [dm3] X_10392110_SNP [dm6]	C	T	1.004e^-4	0.862	INTRON flw
X	11320702	X_11320702_SNP [dm3] X_11426669_SNP [dm6]	C	A	1.009e^-4	0.862	INTRON Gs2	TF binding site BDTNP1_TFBS_dl
3R	7032434	3R_7032434_SNP [dm3] 3R_11206712_SNP [dm6]	G	A	1.022e^-4	0.862	INTRON cu
3R	13635948	3R_13635948_SNP [dm3] 3R_17810226_SNP [dm6]	T	G	1.027e^-4	0.862	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5959961	3L_5959961_DEL [dm3] 3L_5966861_DEL [dm6]	CGAAGTGC	C	1.031e^-4	0.862	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14150208	3R_14150208_SNP [dm3] 3R_18324486_SNP [dm6]	A	G	1.031e^-4	0.862	INTRON CG31235
2R	9203401	2R_9203401_SNP [dm3] 2R_13315896_SNP [dm6]	C	T	1.044e^-4	0.862	INTERGENIC
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	1.047e^-4	0.862	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3L	18417792	3L_18417792_SNP [dm3] 3L_18424692_SNP [dm6]	T	A	1.049e^-4	0.862	INTERGENIC
3L	6987961	3L_6987961_SNP [dm3] 3L_6994861_SNP [dm6]	C	G	1.057e^-4	0.862	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
X	14752023	X_14752023_SNP [dm3] X_14857990_SNP [dm6]	T	C	1.057e^-4	0.862	INTRON Flo2
3R	20116128	3R_20116128_SNP [dm3] 3R_24290406_SNP [dm6]	G	A	1.057e^-4	0.862	SYNONYMOUS_CODING CG6364 UPSTREAM CG34290	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4437888	X_4437888_SNP [dm3] X_4543855_SNP [dm6]	C	T	1.058e^-4	0.862	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	11883598	3R_11883598_SNP [dm3] 3R_16057876_SNP [dm6]	T	C	1.060e^-4	0.862	SYNONYMOUS_CODING msps
3L	14980339	3L_14980339_SNP [dm3] 3L_14987239_SNP [dm6]	C	T	1.061e^-4	0.862	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8363127	3R_8363127_SNP [dm3] 3R_12537405_SNP [dm6]	A	G	1.061e^-4	0.862	INTRON Octbeta3R
3R	1956520	3R_1956520_SNP [dm3] 3R_6130798_SNP [dm6]	T	C	1.067e^-4	0.862	INTERGENIC
X	2705469	X_2705469_SNP [dm3] X_2811436_SNP [dm6]	G	T	1.071e^-4	0.862	DOWNSTREAM CG12498 INTRON kirre
X	3451262	X_3451262_SNP [dm3] X_3557229_SNP [dm6]	T	G	1.078e^-4	0.862	UPSTREAM ppk8 INTRON CG32791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11386564	2L_11386564_SNP [dm3] 2L_11386564_SNP [dm6]	A	T	1.084e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	1.087e^-4	0.862	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10388513	3L_10388513_SNP [dm3] 3L_10395413_SNP [dm6]	T	A	1.092e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24946504	3R_24946504_DEL [dm3] 3R_29120782_DEL [dm6]	GT	C	1.096e^-4	0.862	INTRON yem	TF binding site mE1_TFBS_chinmo
3L	20931108	3L_20931108_SNP [dm3] 3L_20938008_SNP [dm6]	T	A	1.100e^-4	0.862	INTRON fng
3L	11178059	3L_11178059_SNP [dm3] 3L_11184959_SNP [dm6]	C	T	1.109e^-4	0.862	INTRON GlcAT-P
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	1.112e^-4	0.862	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	6219136	3R_6219136_SNP [dm3] 3R_10393414_SNP [dm6]	T	A	1.125e^-4	0.862	INTRON cwo
3L	15901377	3L_15901377_SNP [dm3] 3L_15908277_SNP [dm6]	G	T	1.138e^-4	0.862	INTRON sff
X	16508302	X_16508302_SNP [dm3] X_16614269_SNP [dm6]	C	T	1.139e^-4	0.862	UTR_3_PRIME mbt DOWNSTREAM CG9782
X	9884025	X_9884025_SNP [dm3] X_9989992_SNP [dm6]	T	A	1.140e^-4	0.862	INTRON CG32694	TF binding site mE1_TFBS_HSA
3R	11252588	3R_11252588_SNP [dm3] 3R_15426866_SNP [dm6]	C	T	1.144e^-4	0.862	UTR_5_PRIME CG6118 INTRON CG6118
3R	21298583	3R_21298583_SNP [dm3] 3R_25472861_SNP [dm6]	T	G	1.150e^-4	0.862	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12658659	3R_12658659_SNP [dm3] 3R_16832937_SNP [dm6]	C	T	1.151e^-4	0.862	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13400316	3R_13400316_SNP [dm3] 3R_17574594_SNP [dm6]	A	C	1.156e^-4	0.862	INTERGENIC
3R	4666084	3R_4666084_SNP [dm3] 3R_8840362_SNP [dm6]	G	A	1.157e^-4	0.862	SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20898756	3R_20898756_SNP [dm3] 3R_25073034_SNP [dm6]	G	A	1.160e^-4	0.862	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3L	20554424	3L_20554424_SNP [dm3] 3L_20561324_SNP [dm6]	A	C	1.163e^-4	0.862	INTERGENIC
2R	12819920	2R_12819920_INS [dm3] 2R_16932415_INS [dm6]	T	TAT	1.164e^-4	0.862	INTRON Pkc53E
2L	1180652	2L_1180652_SNP [dm3] 2L_1180652_SNP [dm6]	G	T	1.165e^-4	0.862	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	1.179e^-4	0.862	INTERGENIC
2R	13791536	2R_13791536_SNP [dm3] 2R_17904031_SNP [dm6]	A	T	1.182e^-4	0.862	INTRON Elk
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	1.185e^-4	0.862	UPSTREAM CG17292 INTRON CG17292
3R	21298590	3R_21298590_SNP [dm3] 3R_25472868_SNP [dm6]	G	T	1.189e^-4	0.862	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22855739	3R_22855739_SNP [dm3] 3R_27030017_SNP [dm6]	A	C	1.193e^-4	0.862	INTRON RYa-R
3L	15042229	3L_15042229_DEL [dm3] 3L_15049129_DEL [dm6]	AA	A	1.194e^-4	0.862	DOWNSTREAM CG43678 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
2L	16389803	2L_16389803_SNP [dm3] 2L_16389803_SNP [dm6]	G	A	1.204e^-4	0.862	INTERGENIC
3R	2594753	3R_2594753_SNP [dm3] 3R_6769031_SNP [dm6]	A	G	1.205e^-4	0.862	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5551416	2L_5551416_INS [dm3] 2L_5551416_INS [dm6]	T	TTAT	1.206e^-4	0.862	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2373140	X_2373140_SNP [dm3] X_2479107_SNP [dm6]	G	A	1.208e^-4	0.862	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3L	1556691	3L_1556691_SNP [dm3] 3L_1556691_SNP [dm6]	T	C	1.217e^-4	0.862	NON_SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19609196	3R_19609196_SNP [dm3] 3R_23783474_SNP [dm6]	A	G	1.218e^-4	0.862	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	11751158	3R_11751158_SNP [dm3] 3R_15925436_SNP [dm6]	G	C	1.227e^-4	0.865	UPSTREAM CG34276 INTRON CG4221
X	17117373	X_17117373_SNP [dm3] X_17223340_SNP [dm6]	T	A	1.235e^-4	0.868	SYNONYMOUS_CODING CG34327 DOWNSTREAM CG5172
3R	20116292	3R_20116292_SNP [dm3] 3R_24290570_SNP [dm6]	A	G	1.244e^-4	0.871	NON_SYNONYMOUS_CODING CG6364 UPSTREAM CG34290	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	4673415	3R_4673415_SNP [dm3] 3R_8847693_SNP [dm6]	T	A	1.251e^-4	0.871	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14667569	3L_14667569_SNP [dm3] 3L_14674469_SNP [dm6]	A	T	1.254e^-4	0.871	UPSTREAM tRNA:M3:70Fa DOWNSTREAM CG4914 & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13071379	3R_13071379_SNP [dm3] 3R_17245657_SNP [dm6]	T	C	1.262e^-4	0.872	INTRON beat-IIb
2R	12819879	2R_12819879_SNP [dm3] 2R_16932374_SNP [dm6]	A	T	1.272e^-4	0.872	INTRON Pkc53E
3L	17690552	3L_17690552_DEL [dm3] 3L_17697452_DEL [dm6]	ACATGTAACAA...	A	1.276e^-4	0.872	INTRON Ccn
2L	5004746	2L_5004746_SNP [dm3] 2L_5004746_SNP [dm6]	T	A	1.278e^-4	0.872	START_GAINED Rtnl1 UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	23122484	3R_23122484_SNP [dm3] 3R_27296762_SNP [dm6]	G	T	1.280e^-4	0.872	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17446073	3R_17446073_SNP [dm3] 3R_21620351_SNP [dm6]	G	C	1.283e^-4	0.872	UTR_3_PRIME E2f	TF binding site BDTNP1_TFBS_dl
3R	4151683	3R_4151683_SNP [dm3] 3R_8325961_SNP [dm6]	A	T	1.289e^-4	0.873	DOWNSTREAM CG7443 INTRON Poxm
3L	15777536	3L_15777536_SNP [dm3] 3L_15784436_SNP [dm6]	T	A	1.306e^-4	0.881	INTERGENIC
2R	19940285	2R_19940285_SNP [dm3] 2R_24052762_SNP [dm6]	C	A	1.311e^-4	0.881	DOWNSTREAM ppk29 INTRON sei
3L	11011900	3L_11011900_SNP [dm3] 3L_11018800_SNP [dm6]	C	T	1.315e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11882803	3R_11882803_SNP [dm3] 3R_16057081_SNP [dm6]	T	G	1.328e^-4	0.881	INTRON msps
X	12737752	X_12737752_SNP [dm3] X_12843719_SNP [dm6]	T	A	1.328e^-4	0.881	INTRON Pde9
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	1.329e^-4	0.881	UPSTREAM CG17292 INTRON CG17292
3R	13636077	3R_13636077_SNP [dm3] 3R_17810355_SNP [dm6]	C	T	1.338e^-4	0.882	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6932879	2L_6932879_SNP [dm3] 2L_6932879_SNP [dm6]	A	G	1.345e^-4	0.882	SYNONYMOUS_CODING CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
2R	3225573	2R_3225573_SNP [dm3] 2R_7338068_SNP [dm6]	G	A	1.346e^-4	0.882	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
X	3451254	X_3451254_SNP [dm3] X_3557221_SNP [dm6]	A	G	1.350e^-4	0.882	UPSTREAM ppk8 INTRON CG32791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11241430	2L_11241430_SNP [dm3] 2L_11241430_SNP [dm6]	T	A	1.361e^-4	0.884	INTRON ab	TF binding site BDTNP1_TFBS_dl
X	9875832	X_9875832_SNP [dm3] X_9981799_SNP [dm6]	T	A	1.361e^-4	0.884	INTERGENIC
2L	8746802	2L_8746802_SNP [dm3] 2L_8746802_SNP [dm6]	A	T	1.409e^-4	0.905	INTERGENIC
3L	18922852	3L_18922852_SNP [dm3] 3L_18929752_SNP [dm6]	C	A	1.410e^-4	0.905	INTRON CG32204
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	1.426e^-4	0.905	SYNONYMOUS_CODING GluRIIE
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	1.431e^-4	0.905	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3R	6976874	3R_6976874_SNP [dm3] 3R_11151152_SNP [dm6]	C	T	1.438e^-4	0.905	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3R	17746601	3R_17746601_SNP [dm3] 3R_21920879_SNP [dm6]	G	C	1.439e^-4	0.905	INTERGENIC
3L	15777515	3L_15777515_SNP [dm3] 3L_15784415_SNP [dm6]	T	A	1.452e^-4	0.905	INTERGENIC
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	1.455e^-4	0.905	SYNONYMOUS_CODING GluRIIE
2R	19515891	2R_19515891_SNP [dm3] 2R_23628368_SNP [dm6]	C	T	1.457e^-4	0.905	INTERGENIC
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	1.468e^-4	0.905	INTERGENIC
3R	20435810	3R_20435810_SNP [dm3] 3R_24610088_SNP [dm6]	T	G	1.479e^-4	0.905	INTRON mld
2L	15103789	2L_15103789_SNP [dm3] 2L_15103789_SNP [dm6]	C	T	1.483e^-4	0.905	INTERGENIC
2L	16603310	2L_16603310_SNP [dm3] 2L_16603310_SNP [dm6]	G	A	1.488e^-4	0.905	INTRON CG42389	TF binding site mE1_TFBS_zfh1
2L	1359739	2L_1359739_SNP [dm3] 2L_1359739_SNP [dm6]	G	A	1.502e^-4	0.905	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
2R	7066309	2R_7066309_SNP [dm3] 2R_11178804_SNP [dm6]	T	C	1.503e^-4	0.905	INTRON shn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20325499	3R_20325499_SNP [dm3] 3R_24499777_SNP [dm6]	G	A	1.518e^-4	0.905	INTERGENIC
2L	3501674	2L_3501674_SNP [dm3] 2L_3501674_SNP [dm6]	G	A	1.527e^-4	0.905	SYNONYMOUS_CODING tim
3R	4675799	3R_4675799_SNP [dm3] 3R_8850077_SNP [dm6]	C	A	1.531e^-4	0.905	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17806971	3L_17806971_SNP [dm3] 3L_17813871_SNP [dm6]	C	T	1.535e^-4	0.905	UPSTREAM cln3 INTRON cln3
2L	15323087	2L_15323087_SNP [dm3] 2L_15323087_SNP [dm6]	C	A	1.536e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	17672944	3R_17672944_SNP [dm3] 3R_21847222_SNP [dm6]	G	T	1.544e^-4	0.905	UPSTREAM Gr93d DOWNSTREAM CR44087 INTERGENIC
X	18886571	X_18886571_SNP [dm3] X_18992538_SNP [dm6]	G	C	1.545e^-4	0.905	INTRON CG43759
2R	17204489	2R_17204489_SNP [dm3] 2R_21316984_SNP [dm6]	G	A	1.549e^-4	0.905	SYNONYMOUS_CODING CG9485 DOWNSTREAM CG33655	TF binding site mE1_TFBS_cad
3R	12624494	3R_12624494_SNP [dm3] 3R_16798772_SNP [dm6]	C	T	1.555e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	12634196	3R_12634196_SNP [dm3] 3R_16808474_SNP [dm6]	A	C	1.569e^-4	0.905	UTR_3_PRIME abd-A
3R	16474409	3R_16474409_SNP [dm3] 3R_20648687_SNP [dm6]	A	T	1.569e^-4	0.905	UTR_5_PRIME GluRIIE UTR_3_PRIME GluRIID
2R	12995097	2R_12995097_SNP [dm3] 2R_17107592_SNP [dm6]	A	G	1.570e^-4	0.905	DOWNSTREAM CG30456 INTERGENIC
3L	18145695	3L_18145695_SNP [dm3] 3L_18152595_SNP [dm6]	G	C	1.579e^-4	0.905	INTRON CG7330
3L	17542768	3L_17542768_SNP [dm3] 3L_17549668_SNP [dm6]	C	T	1.580e^-4	0.905	UPSTREAM CG7542 & 1 other INTERGENIC
X	11990308	X_11990308_SNP [dm3] X_12096275_SNP [dm6]	C	G	1.581e^-4	0.905	INTRON CR43960 & 1 other
3R	24721108	3R_24721108_SNP [dm3] 3R_28895386_SNP [dm6]	C	T	1.590e^-4	0.905	INTRON Doa
3R	3851763	3R_3851763_SNP [dm3] 3R_8026041_SNP [dm6]	A	G	1.591e^-4	0.905	INTRON CG2747
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	1.596e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	976700	2L_976700_SNP [dm3] 2L_976700_SNP [dm6]	G	A	1.618e^-4	0.905	INTERGENIC
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	1.634e^-4	0.905	INTRON grsm
2L	7111408	2L_7111408_SNP [dm3] 2L_7111408_SNP [dm6]	T	C	1.634e^-4	0.905	INTRON Pvf3
3L	12132799	3L_12132799_DEL [dm3] 3L_12139699_DEL [dm6]	ACTGTATGTAT...	C	1.639e^-4	0.905	INTRON RhoGAP68F
3R	26897872	3R_26897872_DEL [dm3] 3R_31072150_DEL [dm6]	TA	T	1.664e^-4	0.905	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22457085	3R_22457085_SNP [dm3] 3R_26631363_SNP [dm6]	G	A	1.671e^-4	0.905	UPSTREAM TwdlN DOWNSTREAM TwdlJ INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12660620	3R_12660620_SNP [dm3] 3R_16834898_SNP [dm6]	T	A	1.683e^-4	0.905	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	11990265	X_11990265_SNP [dm3] X_12096232_SNP [dm6]	G	C	1.685e^-4	0.905	INTRON CR43960 & 1 other
3L	828073	3L_828073_SNP [dm3] 3L_828073_SNP [dm6]	A	G	1.686e^-4	0.905	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-C788b & 3 others EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	12995096	2R_12995096_SNP [dm3] 2R_17107591_SNP [dm6]	C	T	1.687e^-4	0.905	DOWNSTREAM CG30456 INTERGENIC
2R	3226552	2R_3226552_SNP [dm3] 2R_7339047_SNP [dm6]	A	G	1.691e^-4	0.905	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
X	2746632	X_2746632_DEL [dm3] X_2852599_DEL [dm6]	GAG	G	1.706e^-4	0.905	INTRON kirre
2L	10193241	2L_10193241_SNP [dm3] 2L_10193241_SNP [dm6]	T	G	1.707e^-4	0.905	SYNONYMOUS_CODING Sur	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	7149700	3L_7149700_SNP [dm3] 3L_7156600_SNP [dm6]	C	T	1.712e^-4	0.905	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3457297	X_3457297_SNP [dm3] X_3563264_SNP [dm6]	C	T	1.713e^-4	0.905	INTRON CG32791 & 1 other
3L	11575623	3L_11575623_SNP [dm3] 3L_11582523_SNP [dm6]	C	T	1.720e^-4	0.905	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3L	7149669	3L_7149669_SNP [dm3] 3L_7156569_SNP [dm6]	A	G	1.721e^-4	0.905	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.722e^-4	0.905	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.722e^-4	0.905	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	11751177	3R_11751177_SNP [dm3] 3R_15925455_SNP [dm6]	A	T	1.724e^-4	0.905	UPSTREAM CG34276 INTRON CG4221
X	10377976	X_10377976_SNP [dm3] X_10483943_SNP [dm6]	T	A	1.727e^-4	0.905	INTRON CG32687
2L	12866898	2L_12866898_SNP [dm3] 2L_12866898_SNP [dm6]	T	C	1.735e^-4	0.905	INTERGENIC
X	14213020	X_14213020_SNP [dm3] X_14318987_SNP [dm6]	T	C	1.738e^-4	0.905	INTERGENIC
2L	10793900	2L_10793900_SNP [dm3] 2L_10793900_SNP [dm6]	C	T	1.751e^-4	0.905	INTRON CG31869
2R	3648947	2R_3648947_SNP [dm3] 2R_7761442_SNP [dm6]	T	C	1.763e^-4	0.905	INTRON CG30497 & 1 other
3R	9251965	3R_9251965_SNP [dm3] 3R_13426243_SNP [dm6]	A	C	1.775e^-4	0.905	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
2R	19499367	2R_19499367_SNP [dm3] 2R_23611844_SNP [dm6]	G	A	1.776e^-4	0.905	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6681161	2R_6681161_SNP [dm3] 2R_10793656_SNP [dm6]	T	C	1.776e^-4	0.905	DOWNSTREAM mthl13 INTRON CG33144
2R	7438838	2R_7438838_SNP [dm3] 2R_11551333_SNP [dm6]	T	G	1.778e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21059524	2R_21059524_SNP [dm3] 2R_25172001_SNP [dm6]	A	G	1.794e^-4	0.905	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
3R	26927165	3R_26927165_SNP [dm3] 3R_31101443_SNP [dm6]	G	A	1.796e^-4	0.905	UPSTREAM CG15553 INTERGENIC
3L	10644032	3L_10644032_SNP [dm3] 3L_10650932_SNP [dm6]	T	A	1.809e^-4	0.905	INTRON CG32066
3L	17052651	3L_17052651_SNP [dm3] 3L_17059551_SNP [dm6]	A	C	1.811e^-4	0.905	UTR_3_PRIME Rbp6
3R	1970751	3R_1970751_SNP [dm3] 3R_6145029_SNP [dm6]	A	C	1.825e^-4	0.905	INTERGENIC
3R	12634175	3R_12634175_SNP [dm3] 3R_16808453_SNP [dm6]	T	C	1.833e^-4	0.905	UTR_3_PRIME abd-A
X	4520545	X_4520545_INS [dm3] X_4626512_INS [dm6]	A	AG	1.835e^-4	0.905	UTR_3_PRIME peb DOWNSTREAM peb & 1 other
2R	17229440	2R_17229440_SNP [dm3] 2R_21341935_SNP [dm6]	G	C	1.836e^-4	0.905	UPSTREAM CG15666 DOWNSTREAM dom INTERGENIC
2R	7474290	2R_7474290_SNP [dm3] 2R_11586785_SNP [dm6]	G	T	1.844e^-4	0.905	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_sens
3R	23836172	3R_23836172_SNP [dm3] 3R_28010450_SNP [dm6]	C	T	1.847e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	9203414	2R_9203414_SNP [dm3] 2R_13315909_SNP [dm6]	T	A	1.848e^-4	0.905	INTERGENIC
2R	12820135	2R_12820135_SNP [dm3] 2R_16932630_SNP [dm6]	G	A	1.851e^-4	0.905	INTRON Pkc53E
2R	21059292	2R_21059292_SNP [dm3] 2R_25171769_SNP [dm6]	A	G	1.860e^-4	0.905	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	12489466	3L_12489466_SNP [dm3] 3L_12496366_SNP [dm6]	T	G	1.867e^-4	0.905	INTRON CG10657
3R	20898755	3R_20898755_SNP [dm3] 3R_25073033_SNP [dm6]	A	T	1.870e^-4	0.905	NON_SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
2L	15103795	2L_15103795_SNP [dm3] 2L_15103795_SNP [dm6]	C	T	1.870e^-4	0.905	INTERGENIC
3L	12154694	3L_12154694_SNP [dm3] 3L_12161594_SNP [dm6]	A	G	1.872e^-4	0.905	INTRON CG9760
3R	12632430	3R_12632430_SNP [dm3] 3R_16806708_SNP [dm6]	C	T	1.881e^-4	0.905	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
3L	11024499	3L_11024499_SNP [dm3] 3L_11031399_SNP [dm6]	A	G	1.884e^-4	0.905	INTERGENIC
3R	21672350	3R_21672350_SNP [dm3] 3R_25846628_SNP [dm6]	C	T	1.884e^-4	0.905	UPSTREAM CR45655 DOWNSTREAM CR45656 & 1 other INTERGENIC
3R	15458884	3R_15458884_SNP [dm3] 3R_19633162_SNP [dm6]	G	C	1.884e^-4	0.905	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13908841	3L_13908841_SNP [dm3] 3L_13915741_SNP [dm6]	C	T	1.888e^-4	0.905	INTRON Rgl
2L	15940953	2L_15940953_SNP [dm3] 2L_15940953_SNP [dm6]	T	A	1.890e^-4	0.905	UPSTREAM CG12448 INTRON beat-Ib
2L	15103804	2L_15103804_SNP [dm3] 2L_15103804_SNP [dm6]	C	T	1.890e^-4	0.905	INTERGENIC
2L	15103807	2L_15103807_SNP [dm3] 2L_15103807_SNP [dm6]	G	A	1.890e^-4	0.905	INTERGENIC
2L	4910823	2L_4910823_SNP [dm3] 2L_4910823_SNP [dm6]	A	G	1.915e^-4	0.905	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19595933	3L_19595933_SNP [dm3] 3L_19602833_SNP [dm6]	G	T	1.916e^-4	0.905	NON_SYNONYMOUS_CODING CG9368 UTR_3_PRIME CG9368
3L	17806970	3L_17806970_SNP [dm3] 3L_17813870_SNP [dm6]	T	A	1.918e^-4	0.905	UPSTREAM cln3 INTRON cln3
2R	21059444	2R_21059444_SNP [dm3] 2R_25171921_SNP [dm6]	C	T	1.925e^-4	0.905	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	1647632	2L_1647632_SNP [dm3] 2L_1647632_SNP [dm6]	A	T	1.931e^-4	0.905	UPSTREAM CR45695 INTERGENIC
2L	3887588	2L_3887588_SNP [dm3] 2L_3887588_SNP [dm6]	C	T	1.936e^-4	0.905	SYNONYMOUS_CODING capu INTRON capu
X	5725739	X_5725739_SNP [dm3] X_5831706_SNP [dm6]	T	A	1.938e^-4	0.905	UPSTREAM tRNA:CR32761:Psi DOWNSTREAM CR43264 INTRON CG15765
3L	13978161	3L_13978161_SNP [dm3] 3L_13985061_SNP [dm6]	A	C	1.944e^-4	0.905	INTRON CG17364	TF binding site mE1_TFBS_cad
2R	7438767	2R_7438767_SNP [dm3] 2R_11551262_SNP [dm6]	G	A	1.946e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14569106	2R_14569106_SNP [dm3] 2R_18681601_SNP [dm6]	G	A	1.948e^-4	0.905	NON_SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12163754	3L_12163754_INS [dm3] 3L_12170654_INS [dm6]	T	TT	1.960e^-4	0.905	INTRON Rh7
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	1.964e^-4	0.905	INTRON CG14692
3R	20115879	3R_20115879_SNP [dm3] 3R_24290157_SNP [dm6]	A	C	1.966e^-4	0.905	UPSTREAM CG6364 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6968593	3R_6968593_SNP [dm3] 3R_11142871_SNP [dm6]	G	A	1.998e^-4	0.905	INTERGENIC
3R	1944898	3R_1944898_DEL [dm3] 3R_6119176_DEL [dm6]	CCATTTTGTAAATGGATTTC...	C	2.006e^-4	0.905	INTERGENIC
3R	12650702	3R_12650702_SNP [dm3] 3R_16824980_SNP [dm6]	T	C	2.017e^-4	0.905	INTRON abd-A
3R	24819099	3R_24819099_SNP [dm3] 3R_28993377_SNP [dm6]	A	G	2.020e^-4	0.905	INTRON wat	TF binding site mE1_TFBS_HSA
3L	21689916	3L_21689916_SNP [dm3] 3L_21696816_SNP [dm6]	T	G	2.023e^-4	0.905	INTRON CG32447
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.033e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12186593	3L_12186593_SNP [dm3] 3L_12193493_SNP [dm6]	A	G	2.037e^-4	0.905	SPLICE_SITE_REGION thoc6 SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	12661140	3R_12661140_SNP [dm3] 3R_16835418_SNP [dm6]	A	T	2.039e^-4	0.905	INTRON iab-8	TF binding site mE1_TFBS_HSA
3L	16739188	3L_16739188_SNP [dm3] 3L_16746088_SNP [dm6]	G	A	2.044e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	9619513	3L_9619513_SNP [dm3] 3L_9626413_SNP [dm6]	C	G	2.046e^-4	0.905	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1119065	3L_1119065_SNP [dm3] 3L_1119065_SNP [dm6]	G	A	2.051e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1055666	3L_1055666_SNP [dm3] 3L_1055666_SNP [dm6]	A	G	2.054e^-4	0.905	INTRON bab1
3R	16591863	3R_16591863_SNP [dm3] 3R_20766141_SNP [dm6]	A	G	2.065e^-4	0.905	INTRON Syp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	2177452	X_2177452_SNP [dm3] X_2283419_SNP [dm6]	T	G	2.068e^-4	0.905	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2R	18695660	2R_18695660_SNP [dm3] 2R_22808155_SNP [dm6]	G	T	2.068e^-4	0.905	START_GAINED stl UTR_5_PRIME stl UPSTREAM stl	TF binding site mE1_TFBS_cad
3L	13978180	3L_13978180_SNP [dm3] 3L_13985080_SNP [dm6]	A	G	2.086e^-4	0.905	INTRON CG17364	TF binding site mE1_TFBS_cad
2R	8359929	2R_8359929_SNP [dm3] 2R_12472424_SNP [dm6]	C	T	2.087e^-4	0.905	SYNONYMOUS_CODING CG8550 UPSTREAM dgt5 DOWNSTREAM CG8545
3L	6988620	3L_6988620_SNP [dm3] 3L_6995520_SNP [dm6]	G	A	2.089e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	21325957	3R_21325957_SNP [dm3] 3R_25500235_SNP [dm6]	T	A	2.091e^-4	0.905	INTERGENIC
3R	10780391	3R_10780391_SNP [dm3] 3R_14954669_SNP [dm6]	C	A	2.104e^-4	0.905	INTERGENIC
3R	24721421	3R_24721421_SNP [dm3] 3R_28895699_SNP [dm6]	G	A	2.109e^-4	0.905	INTRON Doa
3L	1055671	3L_1055671_SNP [dm3] 3L_1055671_SNP [dm6]	A	G	2.122e^-4	0.905	INTRON bab1
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	2.124e^-4	0.905	INTERGENIC
3R	8797871	3R_8797871_SNP [dm3] 3R_12972149_SNP [dm6]	T	G	2.128e^-4	0.905	UPSTREAM CG7381 INTRON CG7381
3R	16698225	3R_16698225_SNP [dm3] 3R_20872503_SNP [dm6]	T	A	2.129e^-4	0.905	UPSTREAM TotC DOWNSTREAM TotA INTERGENIC
2L	8122633	2L_8122633_SNP [dm3] 2L_8122633_SNP [dm6]	C	T	2.138e^-4	0.905	INTRON mon2
3R	24947652	3R_24947652_SNP [dm3] 3R_29121930_SNP [dm6]	A	G	2.138e^-4	0.905	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16622341	3R_16622341_SNP [dm3] 3R_20796619_SNP [dm6]	T	C	2.138e^-4	0.905	INTRON Syp
2L	14197428	2L_14197428_SNP [dm3] 2L_14197428_SNP [dm6]	A	G	2.150e^-4	0.905	SYNONYMOUS_CODING Dyrk2 INTRON Dyrk2
X	3457724	X_3457724_SNP [dm3] X_3563691_SNP [dm6]	T	C	2.155e^-4	0.905	INTRON CG32791 & 1 other
3L	1276160	3L_1276160_SNP [dm3] 3L_1276160_SNP [dm6]	A	G	2.156e^-4	0.905	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
3R	12625675	3R_12625675_DEL [dm3] 3R_16799953_DEL [dm6]	AAAGACAAAGCCCGC...	A	2.157e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625691	3R_12625691_MNP [dm3] 3R_16799969_MNP [dm6]	GAG	TGT	2.157e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3L	516680	3L_516680_SNP [dm3] 3L_516680_SNP [dm6]	A	G	2.158e^-4	0.905	INTRON klar
3R	12631415	3R_12631415_SNP [dm3] 3R_16805693_SNP [dm6]	C	A	2.170e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20325484	3R_20325484_INS [dm3] 3R_24499762_INS [dm6]	T	TT	2.187e^-4	0.905	INTERGENIC
3L	10051580	3L_10051580_SNP [dm3] 3L_10058480_SNP [dm6]	A	C	2.190e^-4	0.905	INTRON dpr6
2L	1645826	2L_1645826_SNP [dm3] 2L_1645826_SNP [dm6]	A	G	2.193e^-4	0.905	INTERGENIC
2L	6299795	2L_6299795_SNP [dm3] 2L_6299795_SNP [dm6]	G	T	2.196e^-4	0.905	INTRON Ddr
X	10194314	X_10194314_SNP [dm3] X_10300281_SNP [dm6]	A	G	2.201e^-4	0.905	INTRON alpha-Man-I
2L	16556813	2L_16556813_SNP [dm3] 2L_16556813_SNP [dm6]	A	G	2.202e^-4	0.905	INTRON CG42389
3R	24721594	3R_24721594_SNP [dm3] 3R_28895872_SNP [dm6]	C	G	2.204e^-4	0.905	INTRON Doa
3R	24711349	3R_24711349_SNP [dm3] 3R_28885627_SNP [dm6]	T	C	2.209e^-4	0.905	SYNONYMOUS_CODING CG14526 INTRON CG33203
3R	26284570	3R_26284570_SNP [dm3] 3R_30458848_SNP [dm6]	G	A	2.212e^-4	0.905	UPSTREAM CDase INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4307337	3L_4307337_SNP [dm3] 3L_4307337_SNP [dm6]	T	A	2.220e^-4	0.905	INTRON dyl
3R	3825657	3R_3825657_SNP [dm3] 3R_7999935_SNP [dm6]	C	A	2.231e^-4	0.905	START_GAINED CG14463 UTR_5_PRIME CG14463 UPSTREAM CG14463 DOWNSTREAM Kmn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9630036	3L_9630036_SNP [dm3] 3L_9636936_SNP [dm6]	G	A	2.238e^-4	0.905	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4520439	X_4520439_SNP [dm3] X_4626406_SNP [dm6]	A	T	2.238e^-4	0.905	UTR_3_PRIME peb DOWNSTREAM peb & 1 other
2L	7674447	2L_7674447_SNP [dm3] 2L_7674447_SNP [dm6]	A	G	2.239e^-4	0.905	UTR_5_PRIME Slob INTRON Myo28B1
3R	22641995	3R_22641995_DEL [dm3] 3R_26816273_DEL [dm6]	CT	A	2.240e^-4	0.905	INTRON Tl
3L	1595581	3L_1595581_SNP [dm3] 3L_1595581_SNP [dm6]	G	C	2.248e^-4	0.905	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1554022	3L_1554022_SNP [dm3] 3L_1554022_SNP [dm6]	C	T	2.250e^-4	0.905	DOWNSTREAM Cct1 INTRON Cct2	TF binding site mE1_TFBS_cad
3R	26897771	3R_26897771_SNP [dm3] 3R_31072049_SNP [dm6]	A	G	2.251e^-4	0.905	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6989217	3L_6989217_SNP [dm3] 3L_6996117_SNP [dm6]	C	G	2.255e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	2.257e^-4	0.905	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	13841512	2L_13841512_SNP [dm3] 2L_13841512_SNP [dm6]	T	G	2.258e^-4	0.905	UTR_5_PRIME CG33307 INTRON CenG1A
X	5925092	X_5925092_SNP [dm3] X_6031059_SNP [dm6]	A	T	2.263e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25014183	3R_25014183_SNP [dm3] 3R_29188461_SNP [dm6]	T	G	2.270e^-4	0.905	INTRON CG14509
3L	18283227	3L_18283227_SNP [dm3] 3L_18290127_SNP [dm6]	A	G	2.283e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4917163	2L_4917163_SNP [dm3] 2L_4917163_SNP [dm6]	T	A	2.287e^-4	0.905	INTRON hoe1
3R	21856291	3R_21856291_SNP [dm3] 3R_26030569_SNP [dm6]	T	C	2.287e^-4	0.905	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4059311	X_4059311_SNP [dm3] X_4165278_SNP [dm6]	A	G	2.288e^-4	0.905	INTRON Fas2
3R	8232862	3R_8232862_SNP [dm3] 3R_12407140_SNP [dm6]	C	T	2.297e^-4	0.905	SYNONYMOUS_CODING CG5167	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12625669	3R_12625669_DEL [dm3] 3R_16799947_DEL [dm6]	AAGT	A	2.321e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625674	3R_12625674_SNP [dm3] 3R_16799952_SNP [dm6]	G	T	2.321e^-4	0.905	UPSTREAM CR45750 INTERGENIC
2L	9445539	2L_9445539_SNP [dm3] 2L_9445539_SNP [dm6]	C	G	2.322e^-4	0.905	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10697928	3L_10697928_SNP [dm3] 3L_10704828_SNP [dm6]	G	A	2.328e^-4	0.905	INTERGENIC
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	2.333e^-4	0.905	INTRON sr
3L	19921560	3L_19921560_SNP [dm3] 3L_19928460_SNP [dm6]	T	G	2.334e^-4	0.905	UTR_5_PRIME CG8004 UPSTREAM RhoGDI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15103796	2L_15103796_SNP [dm3] 2L_15103796_SNP [dm6]	G	A	2.336e^-4	0.905	INTERGENIC
3R	17794130	3R_17794130_SNP [dm3] 3R_21968408_SNP [dm6]	A	G	2.337e^-4	0.905	INTRON Eip93F
3R	12629704	3R_12629704_SNP [dm3] 3R_16803982_SNP [dm6]	T	C	2.363e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18280500	3L_18280500_SNP [dm3] 3L_18287400_SNP [dm6]	C	A	2.372e^-4	0.905	INTERGENIC
2R	19502483	2R_19502483_SNP [dm3] 2R_23614960_SNP [dm6]	A	G	2.384e^-4	0.905	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	15278113	3L_15278113_SNP [dm3] 3L_15285013_SNP [dm6]	T	G	2.385e^-4	0.905	INTERGENIC
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	2.387e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15476484	3L_15476484_SNP [dm3] 3L_15483384_SNP [dm6]	C	G	2.388e^-4	0.905	INTERGENIC
2L	4468624	2L_4468624_SNP [dm3] 2L_4468624_SNP [dm6]	C	T	2.407e^-4	0.905	DOWNSTREAM CG17840 INTRON ine	TF binding site mE1_TFBS_cad
X	5925096	X_5925096_SNP [dm3] X_6031063_SNP [dm6]	T	A	2.408e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2753434	2R_2753434_DEL [dm3] 2R_6865929_DEL [dm6]	AT	A	2.415e^-4	0.905	INTRON coro
3L	10131022	3L_10131022_SNP [dm3] 3L_10137922_SNP [dm6]	A	G	2.416e^-4	0.905	INTRON dpr6
3R	6273672	3R_6273672_SNP [dm3] 3R_10447950_SNP [dm6]	A	C	2.421e^-4	0.905	INTERGENIC
2R	3787145	2R_3787145_SNP [dm3] 2R_7899640_SNP [dm6]	G	A	2.425e^-4	0.905	INTRON CG30377
3L	11179099	3L_11179099_SNP [dm3] 3L_11185999_SNP [dm6]	C	G	2.439e^-4	0.905	INTRON GlcAT-P
3R	16489360	3R_16489360_SNP [dm3] 3R_20663638_SNP [dm6]	G	T	2.442e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19894059	2R_19894059_SNP [dm3] 2R_24006536_SNP [dm6]	G	A	2.447e^-4	0.905	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2176730	X_2176730_SNP [dm3] X_2282697_SNP [dm6]	G	C	2.449e^-4	0.905	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	24716285	3R_24716285_SNP [dm3] 3R_28890563_SNP [dm6]	G	A	2.449e^-4	0.905	INTRON Doa
3R	26926951	3R_26926951_DEL [dm3] 3R_31101229_DEL [dm6]	TATTATTAT	A	2.450e^-4	0.905	UPSTREAM CG15553 INTERGENIC
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	2.465e^-4	0.905	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11027728	3L_11027728_SNP [dm3] 3L_11034628_SNP [dm6]	G	T	2.467e^-4	0.905	UPSTREAM CR44547 INTERGENIC
2R	17654405	2R_17654405_SNP [dm3] 2R_21766900_SNP [dm6]	G	A	2.478e^-4	0.905	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
3R	11751251	3R_11751251_SNP [dm3] 3R_15925529_SNP [dm6]	T	G	2.483e^-4	0.905	UPSTREAM CG34276 INTRON CG4221
2R	12834893	2R_12834893_SNP [dm3] 2R_16947388_SNP [dm6]	T	G	2.490e^-4	0.905	SYNONYMOUS_CODING CG34190 DOWNSTREAM Vha16-4 & 2 others
3R	21296762	3R_21296762_SNP [dm3] 3R_25471040_SNP [dm6]	G	C	2.492e^-4	0.905	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9456974	2R_9456974_SNP [dm3] 2R_13569469_SNP [dm6]	G	A	2.494e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	12100625	2L_12100625_SNP [dm3] 2L_12100625_SNP [dm6]	A	G	2.498e^-4	0.905	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
3R	24946496	3R_24946496_SNP [dm3] 3R_29120774_SNP [dm6]	C	A	2.512e^-4	0.905	INTRON yem	TF binding site mE1_TFBS_chinmo
3R	9811496	3R_9811496_DEL [dm3] 3R_13985774_DEL [dm6]	TG	T	2.515e^-4	0.905	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	11945407	3R_11945407_SNP [dm3] 3R_16119685_SNP [dm6]	T	A	2.517e^-4	0.905	INTRON Sb
2L	15103798	2L_15103798_SNP [dm3] 2L_15103798_SNP [dm6]	T	G	2.523e^-4	0.905	INTERGENIC
3R	4046644	3R_4046644_SNP [dm3] 3R_8220922_SNP [dm6]	A	G	2.533e^-4	0.905	NON_SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_sens
3L	18424357	3L_18424357_SNP [dm3] 3L_18431257_SNP [dm6]	A	C	2.534e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21672295	3R_21672295_INS [dm3] 3R_25846573_INS [dm6]	T	TT	2.536e^-4	0.905	UPSTREAM CR45655 DOWNSTREAM CR45656 & 1 other INTERGENIC
X	10285853	X_10285853_DEL [dm3] X_10391820_DEL [dm6]	AGAA	A	2.539e^-4	0.905	INTRON flw
3R	6973468	3R_6973468_SNP [dm3] 3R_11147746_SNP [dm6]	G	A	2.542e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	436697	2L_436697_SNP [dm3] 2L_436697_SNP [dm6]	T	C	2.550e^-4	0.905	INTRON ex
3R	11952910	3R_11952910_SNP [dm3] 3R_16127188_SNP [dm6]	A	C	2.552e^-4	0.905	INTRON Sb
3L	1764581	3L_1764581_SNP [dm3] 3L_1764581_SNP [dm6]	G	T	2.554e^-4	0.905	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26927230	3R_26927230_SNP [dm3] 3R_31101508_SNP [dm6]	G	A	2.566e^-4	0.905	UPSTREAM CG15553 INTERGENIC
2L	4896803	2L_4896803_SNP [dm3] 2L_4896803_SNP [dm6]	C	T	2.580e^-4	0.905	INTRON CG3036
2R	17481609	2R_17481609_SNP [dm3] 2R_21594104_SNP [dm6]	G	A	2.583e^-4	0.905	INTERGENIC
2R	9203579	2R_9203579_SNP [dm3] 2R_13316074_SNP [dm6]	T	C	2.584e^-4	0.905	INTERGENIC
2R	14128839	2R_14128839_SNP [dm3] 2R_18241334_SNP [dm6]	G	T	2.593e^-4	0.905	INTERGENIC
3L	17588943	3L_17588943_SNP [dm3] 3L_17595843_SNP [dm6]	G	T	2.597e^-4	0.905	INTRON Eip74EF
2R	10938533	2R_10938533_SNP [dm3] 2R_15051028_SNP [dm6]	C	T	2.600e^-4	0.905	UPSTREAM CR43622 INTERGENIC
3R	3854093	3R_3854093_SNP [dm3] 3R_8028371_SNP [dm6]	T	C	2.604e^-4	0.905	DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	2.609e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20121706	3R_20121706_SNP [dm3] 3R_24295984_SNP [dm6]	G	A	2.620e^-4	0.905	INTRON crb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11181083	3L_11181083_SNP [dm3] 3L_11187983_SNP [dm6]	C	A	2.624e^-4	0.905	INTRON GlcAT-P
2R	9456944	2R_9456944_SNP [dm3] 2R_13569439_SNP [dm6]	C	T	2.647e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	16474292	3R_16474292_SNP [dm3] 3R_20648570_SNP [dm6]	C	G	2.650e^-4	0.905	NON_SYNONYMOUS_CODING GluRIIE DOWNSTREAM GluRIID
3L	936241	3L_936241_SNP [dm3] 3L_936241_SNP [dm6]	A	C	2.650e^-4	0.905	INTRON Glut1	TF binding site mE1_TFBS_chinmo
2L	438326	2L_438326_SNP [dm3] 2L_438326_SNP [dm6]	T	A	2.653e^-4	0.905	INTRON ex
X	5724242	X_5724242_SNP [dm3] X_5830209_SNP [dm6]	G	C	2.662e^-4	0.905	INTRON CG15765
2L	12573240	2L_12573240_SNP [dm3] 2L_12573240_SNP [dm6]	G	T	2.666e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17380232	2R_17380232_INS [dm3] 2R_21492727_INS [dm6]	A	AGCA	2.683e^-4	0.905	INTRON Fkbp14
3L	10914209	3L_10914209_SNP [dm3] 3L_10921109_SNP [dm6]	A	G	2.685e^-4	0.905	INTERGENIC
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	2.687e^-4	0.905	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3R	21672283	3R_21672283_INS [dm3] 3R_25846561_INS [dm6]	T	TAAAAGTTTT	2.699e^-4	0.905	UPSTREAM CR45655 DOWNSTREAM CR45656 & 1 other INTERGENIC
3L	12179587	3L_12179587_SNP [dm3] 3L_12186487_SNP [dm6]	G	T	2.703e^-4	0.905	INTRON CG6910	TF binding site mE1_TFBS_cad
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	2.721e^-4	0.905	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	3851061	3R_3851061_SNP [dm3] 3R_8025339_SNP [dm6]	C	T	2.725e^-4	0.905	INTRON CG2747
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	2.759e^-4	0.905	INTERGENIC
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	2.762e^-4	0.905	INTRON CG32432
3R	24947387	3R_24947387_INS [dm3] 3R_29121665_INS [dm6]	G	GT	2.765e^-4	0.905	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15027322	3R_15027322_SNP [dm3] 3R_19201600_SNP [dm6]	C	A	2.773e^-4	0.905	DOWNSTREAM CG31475 INTERGENIC
3R	9252601	3R_9252601_SNP [dm3] 3R_13426879_SNP [dm6]	T	C	2.777e^-4	0.905	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	2.789e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	21059266	2R_21059266_SNP [dm3] 2R_25171743_SNP [dm6]	A	G	2.790e^-4	0.905	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	20694078	3L_20694078_SNP [dm3] 3L_20700978_SNP [dm6]	T	A	2.791e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	15734545	2L_15734545_SNP [dm3] 2L_15734545_SNP [dm6]	T	A	2.792e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	8194981	3R_8194981_DEL [dm3] 3R_12369259_DEL [dm6]	ACTGAACGGAATTCGAAGAG...	A	2.793e^-4	0.905	UTR_5_PRIME GstD1 UPSTREAM GstD1 INTRAGENIC GstD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25979413	3R_25979413_SNP [dm3] 3R_30153691_SNP [dm6]	G	A	2.798e^-4	0.905	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	24711432	3R_24711432_SNP [dm3] 3R_28885710_SNP [dm6]	G	A	2.815e^-4	0.905	NON_SYNONYMOUS_CODING CG14526 INTRON CG33203
2L	15941193	2L_15941193_SNP [dm3] 2L_15941193_SNP [dm6]	A	G	2.822e^-4	0.905	UPSTREAM CG12448 INTRON beat-Ib
2L	14642520	2L_14642520_SNP [dm3] 2L_14642520_SNP [dm6]	C	A	2.826e^-4	0.905	INTRON osp
3L	7909651	3L_7909651_SNP [dm3] 3L_7916551_SNP [dm6]	A	T	2.830e^-4	0.905	DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11398573	2L_11398573_SNP [dm3] 2L_11398573_SNP [dm6]	G	A	2.832e^-4	0.905	INTERGENIC	regulatory region REDfly_CRMs
2R	19923000	2R_19923000_SNP [dm3] 2R_24035477_SNP [dm6]	C	T	2.840e^-4	0.905	SYNONYMOUS_CODING MAN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19386424	3L_19386424_SNP [dm3] 3L_19393324_SNP [dm6]	T	A	2.848e^-4	0.905	INTRON CG32206
3R	12659996	3R_12659996_SNP [dm3] 3R_16834274_SNP [dm6]	C	T	2.859e^-4	0.905	INTRON iab-8 EXON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17431615	2R_17431615_SNP [dm3] 2R_21544110_SNP [dm6]	T	A	2.865e^-4	0.905	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	24950563	3R_24950563_SNP [dm3] 3R_29124841_SNP [dm6]	C	G	2.870e^-4	0.905	INTRON CG11880
3R	10634074	3R_10634074_SNP [dm3] 3R_14808352_SNP [dm6]	A	T	2.888e^-4	0.905	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6968594	3R_6968594_SNP [dm3] 3R_11142872_SNP [dm6]	G	T	2.895e^-4	0.905	INTERGENIC
X	13126703	X_13126703_SNP [dm3] X_13232670_SNP [dm6]	T	G	2.902e^-4	0.905	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	966422	2L_966422_DEL [dm3] 2L_966422_DEL [dm6]	TTCTTGTTATTT...	T	2.905e^-4	0.905	INTERGENIC
2R	18347364	2R_18347364_INS [dm3] 2R_22459859_INS [dm6]	A	AA	2.917e^-4	0.905	INTRON CG10384
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	2.920e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20660939	3L_20660939_SNP [dm3] 3L_20667839_SNP [dm6]	C	A	2.939e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18148854	3L_18148854_SNP [dm3] 3L_18155754_SNP [dm6]	T	C	2.948e^-4	0.905	SYNONYMOUS_CODING CG13699
3L	6987901	3L_6987901_SNP [dm3] 3L_6994801_SNP [dm6]	T	C	2.953e^-4	0.905	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12995246	2R_12995246_SNP [dm3] 2R_17107741_SNP [dm6]	T	C	2.960e^-4	0.905	DOWNSTREAM CG30456 INTERGENIC
3R	21298218	3R_21298218_SNP [dm3] 3R_25472496_SNP [dm6]	A	C	2.966e^-4	0.905	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21298868	3R_21298868_SNP [dm3] 3R_25473146_SNP [dm6]	T	G	2.966e^-4	0.905	UPSTREAM Vps33B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5404373	X_5404373_SNP [dm3] X_5510340_SNP [dm6]	A	T	2.970e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11990384	X_11990384_SNP [dm3] X_12096351_SNP [dm6]	G	T	2.974e^-4	0.905	INTRON CR43960 & 1 other
3R	15799737	3R_15799737_SNP [dm3] 3R_19974015_SNP [dm6]	C	G	2.975e^-4	0.905	SYNONYMOUS_CODING CG31213 INTRON Hs6st
3R	9459061	3R_9459061_SNP [dm3] 3R_13633339_SNP [dm6]	G	C	2.977e^-4	0.905	SYNONYMOUS_CODING CG10841
2R	13833733	2R_13833733_SNP [dm3] 2R_17946228_SNP [dm6]	A	T	2.988e^-4	0.905	INTERGENIC
2L	9368455	2L_9368455_SNP [dm3] 2L_9368455_SNP [dm6]	G	A	2.992e^-4	0.905	DOWNSTREAM CG34181 INTERGENIC
3L	18142313	3L_18142313_SNP [dm3] 3L_18149213_SNP [dm6]	G	T	2.995e^-4	0.905	SYNONYMOUS_CODING CG7330
3L	10051569	3L_10051569_SNP [dm3] 3L_10058469_SNP [dm6]	C	T	2.997e^-4	0.905	INTRON dpr6
3L	11021837	3L_11021837_SNP [dm3] 3L_11028737_SNP [dm6]	C	T	2.999e^-4	0.905	INTRON CG32081	TF binding site mE1_TFBS_sens
3L	4032190	3L_4032190_SNP [dm3] 3L_4032190_SNP [dm6]	G	C	3.009e^-4	0.905	SPLICE_SITE_REGION Gr64d UTR_5_PRIME Gr64d & 1 other DOWNSTREAM Gr64b & 1 other INTRON Gr64d
2L	11203311	2L_11203311_SNP [dm3] 2L_11203311_SNP [dm6]	T	C	3.011e^-4	0.905	SPLICE_SITE_REGION Ca-beta START_GAINED Ca-beta UTR_5_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21672604	3R_21672604_SNP [dm3] 3R_25846882_SNP [dm6]	A	G	3.012e^-4	0.905	DOWNSTREAM CR45656 & 1 other EXON CR45655
2R	19922991	2R_19922991_SNP [dm3] 2R_24035468_SNP [dm6]	C	T	3.027e^-4	0.905	SYNONYMOUS_CODING MAN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12450220	2R_12450220_SNP [dm3] 2R_16562715_SNP [dm6]	C	T	3.029e^-4	0.905	INTRON DAT
3L	18565146	3L_18565146_SNP [dm3] 3L_18572046_SNP [dm6]	G	A	3.030e^-4	0.905	INTRON AstC-R1
2L	12858817	2L_12858817_SNP [dm3] 2L_12858817_SNP [dm6]	G	A	3.036e^-4	0.905	INTERGENIC
X	2468205	X_2468205_SNP [dm3] X_2574172_SNP [dm6]	C	T	3.049e^-4	0.905	INTRON Pdfr
X	19896158	X_19896158_SNP [dm3] X_20002125_SNP [dm6]	G	T	3.050e^-4	0.905	UPSTREAM CG17003 INTERGENIC
3L	11027705	3L_11027705_DEL [dm3] 3L_11034605_DEL [dm6]	CTCCTCCTGC	C	3.054e^-4	0.905	UPSTREAM CR44547 INTERGENIC
2L	1359731	2L_1359731_SNP [dm3] 2L_1359731_SNP [dm6]	A	T	3.055e^-4	0.905	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
3R	21516649	3R_21516649_SNP [dm3] 3R_25690927_SNP [dm6]	A	G	3.060e^-4	0.905	INTERGENIC
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	3.065e^-4	0.905	DOWNSTREAM CG10185 INTRON msps
2R	12816911	2R_12816911_SNP [dm3] 2R_16929406_SNP [dm6]	T	C	3.066e^-4	0.905	INTRON Pkc53E
2L	18418340	2L_18418340_SNP [dm3] 2L_18418340_SNP [dm6]	G	T	3.066e^-4	0.905	INTERGENIC
3R	16489348	3R_16489348_SNP [dm3] 3R_20663626_SNP [dm6]	C	G	3.073e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	16146492	3L_16146492_SNP [dm3] 3L_16153392_SNP [dm6]	G	A	3.074e^-4	0.905	INTRON CG5151
2R	13791478	2R_13791478_SNP [dm3] 2R_17903973_SNP [dm6]	G	A	3.075e^-4	0.905	INTRON Elk
X	18821464	X_18821464_SNP [dm3] X_18927431_SNP [dm6]	T	G	3.083e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26926948	3R_26926948_SNP [dm3] 3R_31101226_SNP [dm6]	T	G	3.086e^-4	0.905	UPSTREAM CG15553 INTERGENIC
2R	17273344	2R_17273344_SNP [dm3] 2R_21385839_SNP [dm6]	C	A	3.088e^-4	0.905	UPSTREAM Acox57D-p INTRON EfSec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12601481	3R_12601481_DEL [dm3] 3R_16775759_DEL [dm6]	GG	G	3.095e^-4	0.905	INTERGENIC
3L	1595556	3L_1595556_SNP [dm3] 3L_1595556_SNP [dm6]	A	C	3.104e^-4	0.905	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12912450	2L_12912450_SNP [dm3] 2L_12912450_SNP [dm6]	T	A	3.106e^-4	0.905	UPSTREAM ACXC INTERGENIC
2L	12912451	2L_12912451_SNP [dm3] 2L_12912451_SNP [dm6]	G	T	3.106e^-4	0.905	UPSTREAM ACXC INTERGENIC
3L	11656574	3L_11656574_SNP [dm3] 3L_11663474_SNP [dm6]	T	A	3.108e^-4	0.905	INTRON CG32085
X	7897437	X_7897437_SNP [dm3] X_8003404_SNP [dm6]	T	G	3.116e^-4	0.905	INTRON Tbh
3R	19323454	3R_19323454_SNP [dm3] 3R_23497732_SNP [dm6]	T	C	3.118e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12632197	3R_12632197_SNP [dm3] 3R_16806475_SNP [dm6]	T	C	3.121e^-4	0.905	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
2L	5551431	2L_5551431_SNP [dm3] 2L_5551431_SNP [dm6]	A	T	3.121e^-4	0.905	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2656427	2L_2656427_SNP [dm3] 2L_2656427_SNP [dm6]	A	C	3.129e^-4	0.905	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
2L	2656431	2L_2656431_SNP [dm3] 2L_2656431_SNP [dm6]	G	A	3.129e^-4	0.905	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
3R	24951601	3R_24951601_SNP [dm3] 3R_29125879_SNP [dm6]	C	T	3.143e^-4	0.905	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	3.146e^-4	0.905	INTRON CG10089
3R	24874290	3R_24874290_SNP [dm3] 3R_29048568_SNP [dm6]	C	T	3.149e^-4	0.905	UTR_3_PRIME Pkc98E UPSTREAM CG11837
3R	23122439	3R_23122439_SNP [dm3] 3R_27296717_SNP [dm6]	T	G	3.153e^-4	0.905	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25476975	3R_25476975_SNP [dm3] 3R_29651253_SNP [dm6]	G	C	3.153e^-4	0.905	INTRON Dop1R2
2L	437171	2L_437171_SNP [dm3] 2L_437171_SNP [dm6]	T	C	3.154e^-4	0.905	INTRON ex
3R	12627935	3R_12627935_SNP [dm3] 3R_16802213_SNP [dm6]	A	T	3.158e^-4	0.905	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25006176	3R_25006176_SNP [dm3] 3R_29180454_SNP [dm6]	C	A	3.160e^-4	0.905	INTRON CG14509
3R	26559040	3R_26559040_SNP [dm3] 3R_30733318_SNP [dm6]	C	A	3.166e^-4	0.905	INTERGENIC
3R	11900467	3R_11900467_SNP [dm3] 3R_16074745_SNP [dm6]	G	A	3.168e^-4	0.905	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3339613	X_3339613_INS [dm3] X_3445580_INS [dm6]	T	TTTTT	3.172e^-4	0.905	UPSTREAM CG12535 INTRON CR44999 & 1 other
2R	12824787	2R_12824787_SNP [dm3] 2R_16937282_SNP [dm6]	G	A	3.182e^-4	0.905	UPSTREAM CG43788 INTRON Pkc53E
3R	448518	3R_448518_DEL [dm3] 3R_4622796_DEL [dm6]	CCCAGCAGCCTGCCCA...	C	3.186e^-4	0.905	CODON_DELETION 5-HT2A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2646280	3L_2646280_SNP [dm3] 3L_2646280_SNP [dm6]	C	G	3.192e^-4	0.905	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14426106	2L_14426106_SNP [dm3] 2L_14426106_SNP [dm6]	A	G	3.206e^-4	0.905	UPSTREAM Cpr35B INTERGENIC
3L	10707071	3L_10707071_SNP [dm3] 3L_10713971_SNP [dm6]	T	A	3.207e^-4	0.905	INTERGENIC
3R	20122425	3R_20122425_SNP [dm3] 3R_24296703_SNP [dm6]	T	G	3.212e^-4	0.905	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Trl
X	10119522	X_10119522_SNP [dm3] X_10225489_SNP [dm6]	C	T	3.216e^-4	0.905	SYNONYMOUS_CODING CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15781166	3L_15781166_SNP [dm3] 3L_15788066_SNP [dm6]	A	T	3.217e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
3R	5151674	3R_5151674_SNP [dm3] 3R_9325952_SNP [dm6]	C	A	3.226e^-4	0.905	INTRON CG8861
3R	9416536	3R_9416536_DEL [dm3] 3R_13590814_DEL [dm6]	GG	G	3.229e^-4	0.905	DOWNSTREAM CG14369 INTERGENIC
2R	9956629	2R_9956629_SNP [dm3] 2R_14069124_SNP [dm6]	G	A	3.231e^-4	0.905	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21059677	2R_21059677_SNP [dm3] 2R_25172154_SNP [dm6]	T	G	3.232e^-4	0.905	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
3R	24951597	3R_24951597_SNP [dm3] 3R_29125875_SNP [dm6]	G	C	3.237e^-4	0.905	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4507055	3R_4507055_SNP [dm3] 3R_8681333_SNP [dm6]	T	C	3.248e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	3228060	2R_3228060_SNP [dm3] 2R_7340555_SNP [dm6]	C	A	3.249e^-4	0.905	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3R	21297537	3R_21297537_SNP [dm3] 3R_25471815_SNP [dm6]	G	A	3.259e^-4	0.905	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12288793	3L_12288793_SNP [dm3] 3L_12295693_SNP [dm6]	C	A	3.263e^-4	0.905	INTRON CG4328
2R	15095030	2R_15095030_DEL [dm3] 2R_19207525_DEL [dm6]	AAATCGAGTAAATGAAGA...	A	3.267e^-4	0.905	INTRON hppy
2L	3538718	2L_3538718_SNP [dm3] 2L_3538718_SNP [dm6]	A	G	3.276e^-4	0.905	UPSTREAM drm DOWNSTREAM CR44308 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26897738	3R_26897738_SNP [dm3] 3R_31072016_SNP [dm6]	T	G	3.282e^-4	0.905	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14478322	2L_14478322_SNP [dm3] 2L_14478322_SNP [dm6]	G	C	3.285e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15863687	2L_15863687_SNP [dm3] 2L_15863687_SNP [dm6]	T	C	3.287e^-4	0.905	DOWNSTREAM CR42791 INTERGENIC
3L	17163220	3L_17163220_SNP [dm3] 3L_17170120_SNP [dm6]	G	A	3.291e^-4	0.905	INTRON Rbp6
2R	20213551	2R_20213551_DEL [dm3] 2R_24326028_DEL [dm6]	AAAGCGAA	A	3.294e^-4	0.905	INTRON CR44810
2L	16604626	2L_16604626_SNP [dm3] 2L_16604626_SNP [dm6]	T	G	3.305e^-4	0.905	INTRON CG42389
2R	17649824	2R_17649824_SNP [dm3] 2R_21762319_SNP [dm6]	T	A	3.307e^-4	0.905	DOWNSTREAM CR43983 INTERGENIC
2L	966402	2L_966402_SNP [dm3] 2L_966402_SNP [dm6]	T	A	3.311e^-4	0.905	INTERGENIC
2R	17403009	2R_17403009_SNP [dm3] 2R_21515504_SNP [dm6]	T	C	3.316e^-4	0.905	DOWNSTREAM MESK2 INTRON MESK2
2L	16389787	2L_16389787_SNP [dm3] 2L_16389787_SNP [dm6]	G	T	3.335e^-4	0.905	INTERGENIC
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	3.337e^-4	0.905	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
2R	12810334	2R_12810334_SNP [dm3] 2R_16922829_SNP [dm6]	G	A	3.341e^-4	0.905	INTERGENIC
3L	11576046	3L_11576046_SNP [dm3] 3L_11582946_SNP [dm6]	G	A	3.343e^-4	0.905	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
2L	14548894	2L_14548894_SNP [dm3] 2L_14548894_SNP [dm6]	T	A	3.345e^-4	0.905	SYNONYMOUS_CODING CG4218
2L	12912458	2L_12912458_SNP [dm3] 2L_12912458_SNP [dm6]	T	G	3.353e^-4	0.905	UPSTREAM ACXC INTERGENIC
2R	21059676	2R_21059676_SNP [dm3] 2R_25172153_SNP [dm6]	A	G	3.355e^-4	0.905	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12186824	3L_12186824_SNP [dm3] 3L_12193724_SNP [dm6]	A	G	3.355e^-4	0.905	UPSTREAM thoc6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
2R	8359932	2R_8359932_SNP [dm3] 2R_12472427_SNP [dm6]	C	G	3.358e^-4	0.905	SYNONYMOUS_CODING CG8550 UPSTREAM dgt5 DOWNSTREAM CG8545
3R	26932658	3R_26932658_SNP [dm3] 3R_31106936_SNP [dm6]	C	T	3.364e^-4	0.905	NON_SYNONYMOUS_CODING CG11318
2R	21069654	2R_21069654_SNP [dm3] 2R_25182131_SNP [dm6]	T	G	3.368e^-4	0.905	INTERGENIC
3L	11426663	3L_11426663_SNP [dm3] 3L_11433563_SNP [dm6]	T	A	3.371e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11369549	3L_11369549_SNP [dm3] 3L_11376449_SNP [dm6]	G	A	3.373e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17747018	3R_17747018_SNP [dm3] 3R_21921296_SNP [dm6]	C	T	3.375e^-4	0.905	INTERGENIC
2L	7574706	2L_7574706_SNP [dm3] 2L_7574706_SNP [dm6]	G	A	3.380e^-4	0.905	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11385963	2L_11385963_INS [dm3] 2L_11385963_INS [dm6]	T	TTAATATTT	3.381e^-4	0.905	INTERGENIC	regulatory region REDfly_CRMs
3R	13081755	3R_13081755_SNP [dm3] 3R_17256033_SNP [dm6]	G	T	3.383e^-4	0.905	INTRON beat-IIb
3L	9283258	3L_9283258_SNP [dm3] 3L_9290158_SNP [dm6]	A	T	3.386e^-4	0.905	INTERGENIC
3L	9283265	3L_9283265_DEL [dm3] 3L_9290165_DEL [dm6]	CTGA	C	3.386e^-4	0.905	INTERGENIC
2L	7489435	2L_7489435_SNP [dm3] 2L_7489435_SNP [dm6]	A	G	3.391e^-4	0.905	INTRON Ziz
3L	11024515	3L_11024515_SNP [dm3] 3L_11031415_SNP [dm6]	A	T	3.401e^-4	0.905	INTERGENIC
3L	18552959	3L_18552959_SNP [dm3] 3L_18559859_SNP [dm6]	G	A	3.411e^-4	0.905	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	869141	3R_869141_SNP [dm3] 3R_5043419_SNP [dm6]	T	C	3.416e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21654141	3L_21654141_DEL [dm3] 3L_21661041_DEL [dm6]	AA	A	3.416e^-4	0.905	INTRON CG43980
3R	21672251	3R_21672251_INS [dm3] 3R_25846529_INS [dm6]	A	ATAAATAAATACAATACAAT...	3.431e^-4	0.905	UPSTREAM CR45655 DOWNSTREAM CR45656 & 1 other INTERGENIC
2L	3166083	2L_3166083_SNP [dm3] 2L_3166083_SNP [dm6]	T	C	3.434e^-4	0.905	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6625632	3L_6625632_SNP [dm3] 3L_6632532_SNP [dm6]	A	C	3.437e^-4	0.905	INTRON GluRIA
3R	12626442	3R_12626442_SNP [dm3] 3R_16800720_SNP [dm6]	C	G	3.438e^-4	0.905	UPSTREAM CR45751 EXON CR45750	enhancer mE1_CBP_Enhancers
2L	18256181	2L_18256181_SNP [dm3] 2L_18256181_SNP [dm6]	G	T	3.438e^-4	0.905	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
3R	24946247	3R_24946247_SNP [dm3] 3R_29120525_SNP [dm6]	G	A	3.441e^-4	0.905	SPLICE_SITE_REGION yem INTRON yem	TF binding site mE1_TFBS_chinmo
3L	24297951	3L_24297951_SNP [dm3] 3L_24304851_SNP [dm6]	C	A	3.451e^-4	0.905	INTERGENIC
3R	11889864	3R_11889864_SNP [dm3] 3R_16064142_SNP [dm6]	A	G	3.454e^-4	0.905	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
X	8622100	X_8622100_SNP [dm3] X_8728067_SNP [dm6]	C	T	3.468e^-4	0.905	INTERGENIC
2R	7446965	2R_7446965_SNP [dm3] 2R_11559460_SNP [dm6]	T	A	3.468e^-4	0.905	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15433147	X_15433147_SNP [dm3] X_15539114_SNP [dm6]	G	A	3.470e^-4	0.905	INTRON Ac13E
2R	12810346	2R_12810346_SNP [dm3] 2R_16922841_SNP [dm6]	G	T	3.475e^-4	0.905	INTERGENIC
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	3.484e^-4	0.905	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
3R	21298817	3R_21298817_SNP [dm3] 3R_25473095_SNP [dm6]	A	G	3.487e^-4	0.905	UPSTREAM Vps33B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21672299	3R_21672299_SNP [dm3] 3R_25846577_SNP [dm6]	C	A	3.497e^-4	0.905	UPSTREAM CR45655 DOWNSTREAM CR45656 & 1 other INTERGENIC
2R	17686882	2R_17686882_SNP [dm3] 2R_21799377_SNP [dm6]	G	C	3.498e^-4	0.905	UTR_3_PRIME CG4386 UPSTREAM CG18735
X	19972512	X_19972512_DEL [dm3] X_20078479_DEL [dm6]	GTATGTTTGTG...	G	3.499e^-4	0.905	INTERGENIC
2R	17204176	2R_17204176_SNP [dm3] 2R_21316671_SNP [dm6]	G	A	3.502e^-4	0.905	INTRON CG9485	TF binding site mE1_TFBS_cad
X	9326312	X_9326312_DEL [dm3] X_9432279_DEL [dm6]	TGT	T	3.509e^-4	0.905	INTRON mgl
3L	16854728	3L_16854728_SNP [dm3] 3L_16861628_SNP [dm6]	C	T	3.527e^-4	0.905	SYNONYMOUS_CODING CG13029 INTRON Rh4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24953517	3R_24953517_SNP [dm3] 3R_29127795_SNP [dm6]	G	A	3.531e^-4	0.905	SYNONYMOUS_CODING CG11880 DOWNSTREAM dgt6	TF binding site mE1_TFBS_cad
3R	25130360	3R_25130360_SNP [dm3] 3R_29304638_SNP [dm6]	C	T	3.541e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9486541	3R_9486541_SNP [dm3] 3R_13660819_SNP [dm6]	A	T	3.543e^-4	0.905	UPSTREAM B52 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18149591	3L_18149591_SNP [dm3] 3L_18156491_SNP [dm6]	C	T	3.547e^-4	0.905	NON_SYNONYMOUS_CODING CG13699
2R	12809928	2R_12809928_SNP [dm3] 2R_16922423_SNP [dm6]	C	A	3.559e^-4	0.905	INTERGENIC
2L	16653483	2L_16653483_SNP [dm3] 2L_16653483_SNP [dm6]	T	A	3.561e^-4	0.905	INTRON CG42389	TF binding site mE1_TFBS_inv
3L	21700844	3L_21700844_SNP [dm3] 3L_21707744_SNP [dm6]	C	G	3.561e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10051507	3L_10051507_SNP [dm3] 3L_10058407_SNP [dm6]	C	A	3.564e^-4	0.905	INTRON dpr6
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	3.567e^-4	0.905	DOWNSTREAM Cpn INTERGENIC
3R	24721958	3R_24721958_SNP [dm3] 3R_28896236_SNP [dm6]	C	G	3.567e^-4	0.905	INTRON Doa
3R	11883181	3R_11883181_SNP [dm3] 3R_16057459_SNP [dm6]	G	T	3.568e^-4	0.905	INTRON msps
3R	12032678	3R_12032678_SNP [dm3] 3R_16206956_SNP [dm6]	A	T	3.569e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13145235	2R_13145235_SNP [dm3] 2R_17257730_SNP [dm6]	T	A	3.570e^-4	0.905	INTRON mbl & 1 other
X	10281906	X_10281906_DEL [dm3] X_10387873_DEL [dm6]	ATGAAGTA	A	3.572e^-4	0.905	INTRON flw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2099913	2L_2099913_SNP [dm3] 2L_2099913_SNP [dm6]	C	T	3.598e^-4	0.905	INTRON dpr3
X	2176361	X_2176361_SNP [dm3] X_2282328_SNP [dm6]	G	C	3.612e^-4	0.905	SYNONYMOUS_CODING CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12660951	3R_12660951_SNP [dm3] 3R_16835229_SNP [dm6]	C	G	3.612e^-4	0.905	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11656321	3L_11656321_SNP [dm3] 3L_11663221_SNP [dm6]	A	T	3.612e^-4	0.905	INTRON CG32085
3R	12627888	3R_12627888_SNP [dm3] 3R_16802166_SNP [dm6]	T	G	3.621e^-4	0.905	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25204555	3R_25204555_INS [dm3] 3R_29378833_INS [dm6]	C	CCTC	3.622e^-4	0.905	INTRON Ptp99A
3R	9811479	3R_9811479_DEL [dm3] 3R_13985757_DEL [dm6]	AA	A	3.624e^-4	0.905	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	6622812	3L_6622812_SNP [dm3] 3L_6629712_SNP [dm6]	T	C	3.632e^-4	0.905	INTRON GluRIA
3L	10452371	3L_10452371_SNP [dm3] 3L_10459271_SNP [dm6]	C	G	3.635e^-4	0.905	UTR_3_PRIME Gem3 DOWNSTREAM Gem3
3L	22149896	3L_22149896_SNP [dm3] 3L_22156796_SNP [dm6]	A	G	3.639e^-4	0.905	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24688303	3R_24688303_SNP [dm3] 3R_28862581_SNP [dm6]	A	T	3.645e^-4	0.905	INTRON spg	TF binding site BDTNP1_TFBS_dl
2R	18722298	2R_18722298_SNP [dm3] 2R_22834775_SNP [dm6]	C	T	3.646e^-4	0.905	DOWNSTREAM CG30265 INTRON CG12490
2L	12912445	2L_12912445_SNP [dm3] 2L_12912445_SNP [dm6]	G	T	3.650e^-4	0.905	UPSTREAM ACXC INTERGENIC
3L	2609753	3L_2609753_SNP [dm3] 3L_2609753_SNP [dm6]	T	A	3.651e^-4	0.905	UTR_3_PRIME Pxn INTRON Pxn
2R	17475623	2R_17475623_DEL [dm3] 2R_21588118_DEL [dm6]	GTG	G	3.656e^-4	0.905	INTERGENIC
3L	13890009	3L_13890009_SNP [dm3] 3L_13896909_SNP [dm6]	C	T	3.680e^-4	0.905	INTRON dysc
3L	9275222	3L_9275222_SNP [dm3] 3L_9282122_SNP [dm6]	T	G	3.682e^-4	0.905	INTRON GluRIB
2L	9547865	2L_9547865_SNP [dm3] 2L_9547865_SNP [dm6]	T	C	3.684e^-4	0.905	UTR_3_PRIME jp DOWNSTREAM jp & 1 other
2R	17118511	2R_17118511_SNP [dm3] 2R_21231006_SNP [dm6]	A	G	3.692e^-4	0.905	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19957218	3L_19957218_SNP [dm3] 3L_19964118_SNP [dm6]	G	T	3.694e^-4	0.905	INTRON Ac76E
2L	15941162	2L_15941162_SNP [dm3] 2L_15941162_SNP [dm6]	A	C	3.705e^-4	0.905	UPSTREAM CG12448 INTRON beat-Ib
X	2609794	X_2609794_SNP [dm3] X_2715761_SNP [dm6]	A	G	3.707e^-4	0.905	SYNONYMOUS_CODING CG2694
2L	15735382	2L_15735382_SNP [dm3] 2L_15735382_SNP [dm6]	G	A	3.710e^-4	0.905	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	12912448	2L_12912448_SNP [dm3] 2L_12912448_SNP [dm6]	C	A	3.711e^-4	0.905	UPSTREAM ACXC INTERGENIC
3R	19151095	3R_19151095_SNP [dm3] 3R_23325373_SNP [dm6]	A	C	3.714e^-4	0.905	INTRON pnt
2R	17781611	2R_17781611_DEL [dm3] 2R_21894106_DEL [dm6]	CA	C	3.722e^-4	0.905	INTRON Fili
2R	14342758	2R_14342758_SNP [dm3] 2R_18455253_SNP [dm6]	T	A	3.724e^-4	0.905	UPSTREAM CG17669 INTERGENIC
3L	14648620	3L_14648620_SNP [dm3] 3L_14655520_SNP [dm6]	G	A	3.732e^-4	0.905	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6299750	2L_6299750_SNP [dm3] 2L_6299750_SNP [dm6]	G	A	3.732e^-4	0.905	INTRON Ddr
3R	24819126	3R_24819126_SNP [dm3] 3R_28993404_SNP [dm6]	G	A	3.754e^-4	0.905	INTRON wat	TF binding site mE1_TFBS_HSA
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	3.754e^-4	0.905	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3R	9252571	3R_9252571_SNP [dm3] 3R_13426849_SNP [dm6]	T	C	3.758e^-4	0.905	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3830424	3R_3830424_SNP [dm3] 3R_8004702_SNP [dm6]	A	G	3.759e^-4	0.905	INTRON CG2698
3R	16591717	3R_16591717_SNP [dm3] 3R_20765995_SNP [dm6]	A	T	3.760e^-4	0.905	INTRON Syp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1644392	2L_1644392_SNP [dm3] 2L_1644392_SNP [dm6]	T	G	3.773e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	20517304	3R_20517304_SNP [dm3] 3R_24691582_SNP [dm6]	C	T	3.797e^-4	0.905	SYNONYMOUS_CODING slo
3R	22855301	3R_22855301_SNP [dm3] 3R_27029579_SNP [dm6]	C	G	3.797e^-4	0.905	INTRON RYa-R
2L	14423107	2L_14423107_SNP [dm3] 2L_14423107_SNP [dm6]	T	A	3.798e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11178278	3L_11178278_SNP [dm3] 3L_11185178_SNP [dm6]	C	T	3.810e^-4	0.905	INTRON GlcAT-P
3L	10421005	3L_10421005_SNP [dm3] 3L_10427905_SNP [dm6]	T	C	3.820e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_bab1
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	3.823e^-4	0.905	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10178085	X_10178085_SNP [dm3] X_10284052_SNP [dm6]	T	A	3.824e^-4	0.905	INTRON alpha-Man-I
3L	18144347	3L_18144347_SNP [dm3] 3L_18151247_SNP [dm6]	A	T	3.826e^-4	0.905	INTRON CG7330
2L	1647711	2L_1647711_SNP [dm3] 2L_1647711_SNP [dm6]	T	A	3.834e^-4	0.905	UPSTREAM CR45695 INTERGENIC
3R	26926946	3R_26926946_SNP [dm3] 3R_31101224_SNP [dm6]	A	G	3.838e^-4	0.905	UPSTREAM CG15553 INTERGENIC
3L	12182794	3L_12182794_SNP [dm3] 3L_12189694_SNP [dm6]	C	T	3.841e^-4	0.905	NON_SYNONYMOUS_CODING Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10379259	X_10379259_SNP [dm3] X_10485226_SNP [dm6]	A	G	3.853e^-4	0.905	INTRON CG32687
2R	7453624	2R_7453624_SNP [dm3] 2R_11566119_SNP [dm6]	G	A	3.856e^-4	0.905	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	1697095	2L_1697095_SNP [dm3] 2L_1697095_SNP [dm6]	A	G	3.860e^-4	0.905	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	17816024	3L_17816024_SNP [dm3] 3L_17822924_SNP [dm6]	G	C	3.866e^-4	0.905	UPSTREAM Grd & 1 other INTERGENIC
3R	19747828	3R_19747828_SNP [dm3] 3R_23922106_SNP [dm6]	G	A	3.869e^-4	0.905	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	12939515	3R_12939515_SNP [dm3] 3R_17113793_SNP [dm6]	T	A	3.870e^-4	0.905	INTRON cher
2L	12316820	2L_12316820_SNP [dm3] 2L_12316820_SNP [dm6]	G	A	3.873e^-4	0.905	UPSTREAM CR45282 EXON CR45283
3R	14449414	3R_14449414_SNP [dm3] 3R_18623692_SNP [dm6]	T	C	3.880e^-4	0.905	INTRON qin
3R	14449417	3R_14449417_SNP [dm3] 3R_18623695_SNP [dm6]	G	T	3.880e^-4	0.905	INTRON qin
3R	17030282	3R_17030282_SNP [dm3] 3R_21204560_SNP [dm6]	T	A	3.881e^-4	0.905	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12865264	2L_12865264_DEL [dm3] 2L_12865264_DEL [dm6]	GG	G	3.884e^-4	0.905	INTERGENIC
2L	11203310	2L_11203310_SNP [dm3] 2L_11203310_SNP [dm6]	T	C	3.886e^-4	0.905	SPLICE_SITE_REGION Ca-beta UTR_5_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	3.886e^-4	0.905	INTRON CG42524
3R	24810833	3R_24810833_SNP [dm3] 3R_28985111_SNP [dm6]	A	G	3.894e^-4	0.905	INTERGENIC
3R	11861897	3R_11861897_SNP [dm3] 3R_16036175_SNP [dm6]	A	T	3.900e^-4	0.905	INTRON pnr
2L	6299744	2L_6299744_SNP [dm3] 2L_6299744_SNP [dm6]	C	T	3.903e^-4	0.905	INTRON Ddr
3L	10051766	3L_10051766_DEL [dm3] 3L_10058666_DEL [dm6]	TGG	AA	3.907e^-4	0.905	INTRON dpr6
3R	3851894	3R_3851894_SNP [dm3] 3R_8026172_SNP [dm6]	T	G	3.909e^-4	0.905	INTRON CG2747
3L	6398453	3L_6398453_SNP [dm3] 3L_6405353_SNP [dm6]	A	C	3.927e^-4	0.905	INTRON CG42747
3L	11006678	3L_11006678_SNP [dm3] 3L_11013578_SNP [dm6]	A	C	3.927e^-4	0.905	INTERGENIC
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	3.930e^-4	0.905	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11070624	3L_11070624_SNP [dm3] 3L_11077524_SNP [dm6]	A	G	3.931e^-4	0.905	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6987630	3L_6987630_SNP [dm3] 3L_6994530_SNP [dm6]	G	A	3.936e^-4	0.905	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7203297	2L_7203297_SNP [dm3] 2L_7203297_SNP [dm6]	A	G	3.943e^-4	0.905	INTRON CG4502	TF binding site BDTNP1_TFBS_dl
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	3.944e^-4	0.905	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7231254	X_7231254_SNP [dm3] X_7337221_SNP [dm6]	T	C	3.951e^-4	0.905	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17273330	2R_17273330_SNP [dm3] 2R_21385825_SNP [dm6]	G	T	3.956e^-4	0.905	SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl
X	15184051	X_15184051_SNP [dm3] X_15290018_SNP [dm6]	A	G	3.958e^-4	0.905	UPSTREAM CR44664 DOWNSTREAM CR44663 INTERGENIC
3R	7022936	3R_7022936_INS [dm3] 3R_11197214_INS [dm6]	C	CAAAC	3.958e^-4	0.905	UTR_3_PRIME CG18577 UPSTREAM cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18580906	2R_18580906_SNP [dm3] 2R_22693401_SNP [dm6]	A	T	3.969e^-4	0.905	UTR_3_PRIME robo
2L	2389222	2L_2389222_SNP [dm3] 2L_2389222_SNP [dm6]	G	A	3.969e^-4	0.905	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18758458	2R_18758458_SNP [dm3] 2R_22870935_SNP [dm6]	G	A	3.972e^-4	0.905	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
3R	27167545	3R_27167545_SNP [dm3] 3R_31341823_SNP [dm6]	C	T	3.974e^-4	0.905	INTRON CG34347
3L	12489802	3L_12489802_SNP [dm3] 3L_12496702_SNP [dm6]	G	A	3.981e^-4	0.905	INTRON CG10657
3R	20164904	3R_20164904_SNP [dm3] 3R_24339182_SNP [dm6]	C	T	3.981e^-4	0.905	SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13131967	3R_13131967_SNP [dm3] 3R_17306245_SNP [dm6]	G	A	3.984e^-4	0.905	INTERGENIC
2L	14012277	2L_14012277_SNP [dm3] 2L_14012277_SNP [dm6]	G	A	3.988e^-4	0.905	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_inv
3R	12659458	3R_12659458_SNP [dm3] 3R_16833736_SNP [dm6]	T	G	3.989e^-4	0.905	DOWNSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	1185547	2L_1185547_SNP [dm3] 2L_1185547_SNP [dm6]	A	T	3.989e^-4	0.905	UTR_3_PRIME Tgt UPSTREAM CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	10178100	X_10178100_MNP [dm3] X_10284067_MNP [dm6]	GTAA	AATC	3.991e^-4	0.905	INTRON alpha-Man-I
2L	18128033	2L_18128033_SNP [dm3] 2L_18128033_SNP [dm6]	C	T	4.003e^-4	0.905	SYNONYMOUS_CODING CG5758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14342755	2R_14342755_SNP [dm3] 2R_18455250_SNP [dm6]	G	C	4.005e^-4	0.905	UPSTREAM CG17669 INTERGENIC
3L	18069073	3L_18069073_SNP [dm3] 3L_18075973_SNP [dm6]	G	T	4.012e^-4	0.905	UPSTREAM CR45391 INTERGENIC
X	14109824	X_14109824_SNP [dm3] X_14215791_SNP [dm6]	G	A	4.016e^-4	0.905	INTRON l_1_G0007
3R	13353714	3R_13353714_SNP [dm3] 3R_17527992_SNP [dm6]	C	T	4.019e^-4	0.905	INTERGENIC
2L	7493460	2L_7493460_DEL [dm3] 2L_7493460_DEL [dm6]	TTTTTCGACAGTTCGCAGC...	T	4.025e^-4	0.905	INTRON Ziz
3R	1156391	3R_1156391_SNP [dm3] 3R_5330669_SNP [dm6]	A	G	4.026e^-4	0.905	INTRON mtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	2984310	3L_2984310_SNP [dm3] 3L_2984310_SNP [dm6]	A	C	4.026e^-4	0.905	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13425626	3L_13425626_SNP [dm3] 3L_13432526_SNP [dm6]	T	C	4.027e^-4	0.905	UPSTREAM tRNA:V4:70BCb INTRON CG10713
2L	11974125	2L_11974125_SNP [dm3] 2L_11974125_SNP [dm6]	A	G	4.028e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12630355	3R_12630355_SNP [dm3] 3R_16804633_SNP [dm6]	T	C	4.044e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26910750	3R_26910750_SNP [dm3] 3R_31085028_SNP [dm6]	T	G	4.049e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8898616	X_8898616_SNP [dm3] X_9004583_SNP [dm6]	C	T	4.065e^-4	0.905	INTRON rdgA & 1 other
3R	13552459	3R_13552459_DEL [dm3] 3R_17726737_DEL [dm6]	TGAAGCTTT	T	4.072e^-4	0.905	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	10422552	3R_10422552_SNP [dm3] 3R_14596830_SNP [dm6]	G	T	4.081e^-4	0.905	UTR_5_PRIME stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12912439	2L_12912439_INS [dm3] 2L_12912439_INS [dm6]	G	GTAACAAAT	4.089e^-4	0.905	UPSTREAM ACXC INTERGENIC
3R	4049726	3R_4049726_SNP [dm3] 3R_8224004_SNP [dm6]	C	G	4.090e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15287574	3L_15287574_SNP [dm3] 3L_15294474_SNP [dm6]	G	T	4.106e^-4	0.905	INTERGENIC
3L	11179065	3L_11179065_SNP [dm3] 3L_11185965_SNP [dm6]	G	A	4.106e^-4	0.905	INTRON GlcAT-P
3L	17491892	3L_17491892_SNP [dm3] 3L_17498792_SNP [dm6]	G	A	4.115e^-4	0.905	INTRON Oatp74D
2L	4765652	2L_4765652_SNP [dm3] 2L_4765652_SNP [dm6]	A	G	4.120e^-4	0.905	INTRON CG15630
3R	19590752	3R_19590752_DEL [dm3] 3R_23765030_DEL [dm6]	ATTTTA	A	4.122e^-4	0.905	INTRON Lsd-1
2L	1647627	2L_1647627_SNP [dm3] 2L_1647627_SNP [dm6]	A	G	4.128e^-4	0.905	UPSTREAM CR45695 INTERGENIC
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	4.131e^-4	0.905	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	18437834	3L_18437834_SNP [dm3] 3L_18444734_SNP [dm6]	G	T	4.135e^-4	0.905	INTERGENIC
2R	14569107	2R_14569107_SNP [dm3] 2R_18681602_SNP [dm6]	T	C	4.142e^-4	0.905	NON_SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1947380	2L_1947380_SNP [dm3] 2L_1947380_SNP [dm6]	C	G	4.149e^-4	0.905	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	4.152e^-4	0.905	INTRON CG9134
3R	26928155	3R_26928155_SNP [dm3] 3R_31102433_SNP [dm6]	T	A	4.159e^-4	0.905	INTERGENIC
3L	12489801	3L_12489801_SNP [dm3] 3L_12496701_SNP [dm6]	A	C	4.169e^-4	0.905	INTRON CG10657
3L	8373422	3L_8373422_SNP [dm3] 3L_8380322_SNP [dm6]	A	G	4.172e^-4	0.905	DOWNSTREAM ImpE1 INTRON ImpE1
2R	18724120	2R_18724120_DEL [dm3] 2R_22836597_DEL [dm6]	TTTAAAACAACA...	T	4.173e^-4	0.905	UTR_3_PRIME CG12490 UPSTREAM CG9825
3L	9619814	3L_9619814_SNP [dm3] 3L_9626714_SNP [dm6]	C	G	4.183e^-4	0.905	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
2R	17571339	2R_17571339_SNP [dm3] 2R_21683834_SNP [dm6]	G	A	4.194e^-4	0.905	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9379502	2R_9379502_SNP [dm3] 2R_13491997_SNP [dm6]	G	A	4.196e^-4	0.905	INTRON bbc
2R	8377151	2R_8377151_SNP [dm3] 2R_12489646_SNP [dm6]	G	A	4.197e^-4	0.905	SYNONYMOUS_CODING fdl
3L	6987986	3L_6987986_SNP [dm3] 3L_6994886_SNP [dm6]	T	A	4.205e^-4	0.905	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
3R	20116297	3R_20116297_SNP [dm3] 3R_24290575_SNP [dm6]	T	C	4.206e^-4	0.905	SYNONYMOUS_CODING CG6364 UPSTREAM CG34290	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19659403	3R_19659403_SNP [dm3] 3R_23833681_SNP [dm6]	C	G	4.222e^-4	0.905	INTRON CG34355
3L	9628674	3L_9628674_SNP [dm3] 3L_9635574_SNP [dm6]	T	C	4.232e^-4	0.905	INTRON fry
2R	20053102	2R_20053102_SNP [dm3] 2R_24165579_SNP [dm6]	A	G	4.253e^-4	0.905	INTRON CG3328
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	4.276e^-4	0.905	INTERGENIC
3L	11199073	3L_11199073_SNP [dm3] 3L_11205973_SNP [dm6]	A	G	4.277e^-4	0.905	UTR_5_PRIME Plod DOWNSTREAM Ube3a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	8533806	2L_8533806_SNP [dm3] 2L_8533806_SNP [dm6]	C	G	4.282e^-4	0.905	INTRON CG17834	TF binding site mE1_TFBS_cad
3R	26101247	3R_26101247_SNP [dm3] 3R_30275525_SNP [dm6]	G	T	4.287e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	2177448	X_2177448_SNP [dm3] X_2283415_SNP [dm6]	T	G	4.303e^-4	0.905	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3R	8477405	3R_8477405_SNP [dm3] 3R_12651683_SNP [dm6]	A	C	4.315e^-4	0.905	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20815625	3R_20815625_SNP [dm3] 3R_24989903_SNP [dm6]	G	T	4.323e^-4	0.905	INTRON tnc
3R	1970736	3R_1970736_SNP [dm3] 3R_6145014_SNP [dm6]	A	G	4.338e^-4	0.905	INTERGENIC
3L	9629640	3L_9629640_SNP [dm3] 3L_9636540_SNP [dm6]	T	G	4.340e^-4	0.905	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18149382	3L_18149382_SNP [dm3] 3L_18156282_SNP [dm6]	T	C	4.345e^-4	0.905	SYNONYMOUS_CODING CG13699
2L	4893404	2L_4893404_SNP [dm3] 2L_4893404_SNP [dm6]	C	A	4.348e^-4	0.905	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	4.350e^-4	0.905	SYNONYMOUS_CODING CG6282
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	4.350e^-4	0.905	INTRON CG34355
3L	11173865	3L_11173865_DEL [dm3] 3L_11180765_DEL [dm6]	AC	T	4.350e^-4	0.905	INTRON GlcAT-P
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	4.358e^-4	0.905	INTRON Cpr62Ba
2L	8224044	2L_8224044_SNP [dm3] 2L_8224044_SNP [dm6]	A	T	4.388e^-4	0.905	SPLICE_SITE_REGION Pvr INTRON Pvr
3R	7036949	3R_7036949_SNP [dm3] 3R_11211227_SNP [dm6]	G	A	4.393e^-4	0.905	UTR_3_PRIME Tctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13134633	3R_13134633_DEL [dm3] 3R_17308911_DEL [dm6]	GG	G	4.410e^-4	0.905	INTERGENIC
3R	11896706	3R_11896706_SNP [dm3] 3R_16070984_SNP [dm6]	C	T	4.415e^-4	0.905	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	25615412	3R_25615412_SNP [dm3] 3R_29789690_SNP [dm6]	A	C	4.419e^-4	0.905	UTR_5_PRIME kay INTRON kay
2L	1092240	2L_1092240_SNP [dm3] 2L_1092240_SNP [dm6]	G	C	4.423e^-4	0.905	INTRON CG4629
2L	4552176	2L_4552176_SNP [dm3] 2L_4552176_SNP [dm6]	G	A	4.424e^-4	0.905	INTRON dp
3L	18552944	3L_18552944_DEL [dm3] 3L_18559844_DEL [dm6]	ACTTTG	A	4.436e^-4	0.905	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12509505	3L_12509505_SNP [dm3] 3L_12516405_SNP [dm6]	A	T	4.438e^-4	0.905	INTRON tral	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17723121	2R_17723121_SNP [dm3] 2R_21835616_SNP [dm6]	G	A	4.440e^-4	0.905	SYNONYMOUS_CODING CG4377 UPSTREAM CG4363
2L	1632305	2L_1632305_SNP [dm3] 2L_1632305_SNP [dm6]	C	T	4.442e^-4	0.905	INTERGENIC
3R	13024595	3R_13024595_SNP [dm3] 3R_17198873_SNP [dm6]	A	T	4.443e^-4	0.905	INTRON Mur89F
2L	4910829	2L_4910829_SNP [dm3] 2L_4910829_SNP [dm6]	A	G	4.444e^-4	0.905	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1788207	3L_1788207_SNP [dm3] 3L_1788207_SNP [dm6]	G	T	4.445e^-4	0.905	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2766871	2L_2766871_SNP [dm3] 2L_2766871_SNP [dm6]	T	C	4.466e^-4	0.905	SYNONYMOUS_CODING aph-1 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7094690	3L_7094690_SNP [dm3] 3L_7101590_SNP [dm6]	T	C	4.476e^-4	0.905	INTRON form3
2R	17582227	2R_17582227_SNP [dm3] 2R_21694722_SNP [dm6]	G	A	4.478e^-4	0.905	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3L	11016484	3L_11016484_DEL [dm3] 3L_11023384_DEL [dm6]	TTAATTTGTAATTTGT...	T	4.490e^-4	0.905	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
3L	11016441	3L_11016441_SNP [dm3] 3L_11023341_SNP [dm6]	G	A	4.491e^-4	0.905	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
2R	17686765	2R_17686765_SNP [dm3] 2R_21799260_SNP [dm6]	C	T	4.499e^-4	0.905	UPSTREAM CG18735 DOWNSTREAM CG4386 INTERGENIC
3R	15787391	3R_15787391_SNP [dm3] 3R_19961669_SNP [dm6]	T	A	4.503e^-4	0.905	INTRON Hs6st
2L	12912456	2L_12912456_SNP [dm3] 2L_12912456_SNP [dm6]	T	A	4.515e^-4	0.905	UPSTREAM ACXC INTERGENIC
2L	10498922	2L_10498922_SNP [dm3] 2L_10498922_SNP [dm6]	G	T	4.517e^-4	0.905	INTRON Myo31DF
2L	8223061	2L_8223061_SNP [dm3] 2L_8223061_SNP [dm6]	G	A	4.519e^-4	0.905	SYNONYMOUS_CODING Pvr
2R	6419632	2R_6419632_INS [dm3] 2R_10532127_INS [dm6]	A	AG	4.521e^-4	0.905	INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17649769	2R_17649769_SNP [dm3] 2R_21762264_SNP [dm6]	A	C	4.522e^-4	0.905	DOWNSTREAM CR43983 INTERGENIC
3L	14669524	3L_14669524_SNP [dm3] 3L_14676424_SNP [dm6]	T	G	4.524e^-4	0.905	INTRON ome & 1 other
3L	428495	3L_428495_SNP [dm3] 3L_428495_SNP [dm6]	A	C	4.525e^-4	0.905	INTERGENIC
3L	11815455	3L_11815455_DEL [dm3] 3L_11822355_DEL [dm6]	AACGCCTTCAAATAATATAT...	A	4.535e^-4	0.905	UPSTREAM RpL10Ab & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	12116087	2R_12116087_SNP [dm3] 2R_16228582_SNP [dm6]	T	C	4.541e^-4	0.905	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15281306	3L_15281306_SNP [dm3] 3L_15288206_SNP [dm6]	C	A	4.557e^-4	0.905	INTERGENIC
2L	7670822	2L_7670822_SNP [dm3] 2L_7670822_SNP [dm6]	T	C	4.564e^-4	0.905	INTRON Slob & 1 other
3R	16176820	3R_16176820_SNP [dm3] 3R_20351098_SNP [dm6]	C	G	4.564e^-4	0.905	INTERGENIC
3R	14619219	3R_14619219_SNP [dm3] 3R_18793497_SNP [dm6]	A	C	4.586e^-4	0.905	UTR_5_PRIME CG7720 INTRON CG7720
3L	18433334	3L_18433334_SNP [dm3] 3L_18440234_SNP [dm6]	G	A	4.599e^-4	0.905	UPSTREAM CR43280 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7453435	2R_7453435_SNP [dm3] 2R_11565930_SNP [dm6]	T	G	4.600e^-4	0.905	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	3562045	2R_3562045_SNP [dm3] 2R_7674540_SNP [dm6]	C	T	4.601e^-4	0.905	UTR_5_PRIME CG12107 UPSTREAM mRpL52 DOWNSTREAM U2A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15327015	2R_15327015_SNP [dm3] 2R_19439510_SNP [dm6]	A	G	4.605e^-4	0.905	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
3R	6973628	3R_6973628_SNP [dm3] 3R_11147906_SNP [dm6]	A	G	4.611e^-4	0.905	INTERGENIC
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	4.615e^-4	0.905	EXON CR44602
X	6008937	X_6008937_DEL [dm3] X_6114904_DEL [dm6]	CTT	A	4.636e^-4	0.905	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12145560	3R_12145560_SNP [dm3] 3R_16319838_SNP [dm6]	A	C	4.637e^-4	0.905	INTRON Sulf1
2R	20711144	2R_20711144_SNP [dm3] 2R_24823621_SNP [dm6]	T	C	4.652e^-4	0.905	INTRON Dll	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19502412	X_19502412_SNP [dm3] X_19608379_SNP [dm6]	G	T	4.653e^-4	0.905	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3458083	X_3458083_DEL [dm3] X_3564050_DEL [dm6]	CG	C	4.653e^-4	0.905	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1647694	2L_1647694_SNP [dm3] 2L_1647694_SNP [dm6]	C	T	4.666e^-4	0.905	UPSTREAM CR45695 INTERGENIC
X	14154456	X_14154456_INS [dm3] X_14260423_INS [dm6]	A	AA	4.672e^-4	0.905	UPSTREAM CG1461 INTERGENIC
X	8893643	X_8893643_SNP [dm3] X_8999610_SNP [dm6]	T	C	4.680e^-4	0.905	UTR_5_PRIME rdgA INTRON rdgA & 1 other
2L	8748232	2L_8748232_DEL [dm3] 2L_8748232_DEL [dm6]	GTCGACGAG	C	4.683e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	8145655	3R_8145655_SNP [dm3] 3R_12319933_SNP [dm6]	G	T	4.685e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13635957	3R_13635957_SNP [dm3] 3R_17810235_SNP [dm6]	C	T	4.693e^-4	0.905	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18150461	3L_18150461_SNP [dm3] 3L_18157361_SNP [dm6]	G	A	4.695e^-4	0.905	INTRON CG13699
X	19283330	X_19283330_SNP [dm3] X_19389297_SNP [dm6]	T	G	4.696e^-4	0.905	INTRON kek5
3R	12600940	3R_12600940_SNP [dm3] 3R_16775218_SNP [dm6]	T	A	4.704e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12316307	3L_12316307_SNP [dm3] 3L_12323207_SNP [dm6]	C	G	4.706e^-4	0.905	INTERGENIC
X	13502830	X_13502830_SNP [dm3] X_13608797_SNP [dm6]	G	C	4.713e^-4	0.905	SYNONYMOUS_CODING CG11178 DOWNSTREAM Ndc80	TF binding site mE1_TFBS_chinmo
3R	16951193	3R_16951193_SNP [dm3] 3R_21125471_SNP [dm6]	G	A	4.721e^-4	0.905	INTRON slmb	TF binding site BDTNP1_TFBS_dl
3L	8641212	3L_8641212_SNP [dm3] 3L_8648112_SNP [dm6]	A	G	4.722e^-4	0.905	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	4.725e^-4	0.905	INTRON Prosap
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	4.726e^-4	0.905	DOWNSTREAM CG10185 INTRON msps
2L	13251019	2L_13251019_SNP [dm3] 2L_13251019_SNP [dm6]	G	A	4.726e^-4	0.905	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13131947	3R_13131947_SNP [dm3] 3R_17306225_SNP [dm6]	T	A	4.737e^-4	0.905	INTERGENIC
2L	2326159	2L_2326159_SNP [dm3] 2L_2326159_SNP [dm6]	T	C	4.745e^-4	0.905	INTRON CG9967 & 1 other
2L	22113933	2L_22113933_DEL [dm3] 2L_22113933_DEL [dm6]	TGTATAA	T	4.751e^-4	0.905	INTERGENIC	transposable element FlyBase
3L	15268529	3L_15268529_SNP [dm3] 3L_15275429_SNP [dm6]	T	C	4.752e^-4	0.905	INTERGENIC
3L	10644231	3L_10644231_SNP [dm3] 3L_10651131_SNP [dm6]	A	T	4.756e^-4	0.905	INTRON CG32066
3R	20637034	3R_20637034_SNP [dm3] 3R_24811312_SNP [dm6]	A	C	4.756e^-4	0.905	INTRON CG5807
X	18876692	X_18876692_SNP [dm3] X_18982659_SNP [dm6]	A	G	4.760e^-4	0.905	INTRON CG43759
2L	1069742	2L_1069742_SNP [dm3] 2L_1069742_SNP [dm6]	A	G	4.766e^-4	0.905	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3825637	3R_3825637_SNP [dm3] 3R_7999915_SNP [dm6]	A	G	4.767e^-4	0.905	START_GAINED CG14463 UTR_5_PRIME CG14463 UPSTREAM CG14463 DOWNSTREAM Kmn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9432470	2L_9432470_SNP [dm3] 2L_9432470_SNP [dm6]	C	T	4.767e^-4	0.905	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6136124	3R_6136124_SNP [dm3] 3R_10310402_SNP [dm6]	G	A	4.770e^-4	0.905	SYNONYMOUS_CODING CG6293	TF binding site mE1_TFBS_cad
2L	4900477	2L_4900477_SNP [dm3] 2L_4900477_SNP [dm6]	A	G	4.774e^-4	0.905	INTRON CG3036
X	5925095	X_5925095_SNP [dm3] X_6031062_SNP [dm6]	C	A	4.775e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8221259	X_8221259_SNP [dm3] X_8327226_SNP [dm6]	C	G	4.782e^-4	0.905	INTRON nAChRalpha3
2R	12813095	2R_12813095_SNP [dm3] 2R_16925590_SNP [dm6]	T	A	4.784e^-4	0.905	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3L	11656410	3L_11656410_SNP [dm3] 3L_11663310_SNP [dm6]	C	G	4.786e^-4	0.905	INTRON CG32085
3R	12633508	3R_12633508_SNP [dm3] 3R_16807786_SNP [dm6]	A	G	4.798e^-4	0.905	UTR_3_PRIME abd-A
2L	10730671	2L_10730671_SNP [dm3] 2L_10730671_SNP [dm6]	T	C	4.799e^-4	0.905	DOWNSTREAM CG6443 & 1 other INTRON CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12601772	3R_12601772_SNP [dm3] 3R_16776050_SNP [dm6]	T	C	4.807e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12625699	3R_12625699_DEL [dm3] 3R_16799977_DEL [dm6]	AACAAG	A	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625707	3R_12625707_DEL [dm3] 3R_16799985_DEL [dm6]	TGGC	T	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625714	3R_12625714_DEL [dm3] 3R_16799992_DEL [dm6]	TCTGGGCAGATAGGGC...	T	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625733	3R_12625733_DEL [dm3] 3R_16800011_DEL [dm6]	TGGCTCC	T	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625746	3R_12625746_DEL [dm3] 3R_16800024_DEL [dm6]	ATTTTGC	A	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625758	3R_12625758_DEL [dm3] 3R_16800036_DEL [dm6]	TCG	T	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12625773	3R_12625773_SNP [dm3] 3R_16800051_SNP [dm6]	A	T	4.807e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	12626182	3R_12626182_SNP [dm3] 3R_16800460_SNP [dm6]	A	G	4.807e^-4	0.905	UPSTREAM CR45750 & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers
2L	14642521	2L_14642521_SNP [dm3] 2L_14642521_SNP [dm6]	A	C	4.810e^-4	0.905	INTRON osp
3L	11024146	3L_11024146_SNP [dm3] 3L_11031046_SNP [dm6]	A	G	4.825e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	4.830e^-4	0.905	INTRON Cad87A
3R	25165939	3R_25165939_SNP [dm3] 3R_29340217_SNP [dm6]	C	A	4.832e^-4	0.905	INTERGENIC
3L	12489635	3L_12489635_SNP [dm3] 3L_12496535_SNP [dm6]	G	A	4.840e^-4	0.905	INTRON CG10657
3L	1431842	3L_1431842_SNP [dm3] 3L_1431842_SNP [dm6]	A	T	4.859e^-4	0.905	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14144811	3R_14144811_SNP [dm3] 3R_18319089_SNP [dm6]	A	C	4.860e^-4	0.905	INTRON CG31235
2L	798775	2L_798775_SNP [dm3] 2L_798775_SNP [dm6]	C	T	4.873e^-4	0.905	INTERGENIC
3L	20904570	3L_20904570_SNP [dm3] 3L_20911470_SNP [dm6]	A	T	4.876e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14463787	2L_14463787_SNP [dm3] 2L_14463787_SNP [dm6]	A	C	4.880e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	15515129	2R_15515129_SNP [dm3] 2R_19627624_SNP [dm6]	G	A	4.888e^-4	0.905	INTRON sm
3R	16314771	3R_16314771_SNP [dm3] 3R_20489049_SNP [dm6]	C	A	4.888e^-4	0.905	INTERGENIC
3R	12625745	3R_12625745_SNP [dm3] 3R_16800023_SNP [dm6]	C	A	4.893e^-4	0.905	UPSTREAM CR45750 INTERGENIC
2L	7964912	2L_7964912_SNP [dm3] 2L_7964912_SNP [dm6]	G	C	4.897e^-4	0.905	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1645507	2L_1645507_INS [dm3] 2L_1645507_INS [dm6]	C	CC	4.908e^-4	0.905	INTERGENIC
2L	16389562	2L_16389562_SNP [dm3] 2L_16389562_SNP [dm6]	A	G	4.915e^-4	0.905	INTERGENIC
3R	12626004	3R_12626004_SNP [dm3] 3R_16800282_SNP [dm6]	G	T	4.917e^-4	0.905	UPSTREAM CR45750 INTERGENIC	enhancer mE1_CBP_Enhancers
3L	7461502	3L_7461502_INS [dm3] 3L_7468402_INS [dm6]	G	CCGA	4.922e^-4	0.905	UTR_3_PRIME CG42660 & 2 others
3R	21675655	3R_21675655_SNP [dm3] 3R_25849933_SNP [dm6]	C	T	4.925e^-4	0.905	DOWNSTREAM CG14545 INTERGENIC
2R	9456983	2R_9456983_SNP [dm3] 2R_13569478_SNP [dm6]	C	T	4.935e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	16815181	2R_16815181_INS [dm3] 2R_20927676_INS [dm6]	G	GTTG	4.939e^-4	0.905	INTRON Rx
2L	4911174	2L_4911174_SNP [dm3] 2L_4911174_SNP [dm6]	C	G	4.946e^-4	0.905	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11004879	3L_11004879_SNP [dm3] 3L_11011779_SNP [dm6]	A	G	4.949e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	22149900	3L_22149900_SNP [dm3] 3L_22156800_SNP [dm6]	A	T	4.959e^-4	0.905	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14449596	3R_14449596_SNP [dm3] 3R_18623874_SNP [dm6]	G	A	4.960e^-4	0.905	INTRON qin
3L	3443881	3L_3443881_SNP [dm3] 3L_3443881_SNP [dm6]	C	G	4.964e^-4	0.905	INTRON eIF5B
3R	2611897	3R_2611897_SNP [dm3] 3R_6786175_SNP [dm6]	T	A	4.965e^-4	0.905	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2765779	2L_2765779_SNP [dm3] 2L_2765779_SNP [dm6]	G	A	4.976e^-4	0.905	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	4205391	3R_4205391_SNP [dm3] 3R_8379669_SNP [dm6]	G	A	4.984e^-4	0.905	INTRON CG45263
3L	18149373	3L_18149373_SNP [dm3] 3L_18156273_SNP [dm6]	T	A	4.990e^-4	0.905	SYNONYMOUS_CODING CG13699
2R	9459832	2R_9459832_SNP [dm3] 2R_13572327_SNP [dm6]	T	C	4.995e^-4	0.905	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	1737439	3L_1737439_SNP [dm3] 3L_1737439_SNP [dm6]	A	G	4.999e^-4	0.905	NON_SYNONYMOUS_CODING CG18173 UPSTREAM Gk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18563685	3L_18563685_SNP [dm3] 3L_18570585_SNP [dm6]	T	G	5.000e^-4	0.905	INTRON AstC-R1
X	12835604	X_12835604_SNP [dm3] X_12941571_SNP [dm6]	T	G	5.001e^-4	0.905	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	14423112	2L_14423112_SNP [dm3] 2L_14423112_SNP [dm6]	G	A	5.005e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad
X	10285176	X_10285176_SNP [dm3] X_10391143_SNP [dm6]	A	T	5.010e^-4	0.905	INTRON flw
2L	12912461	2L_12912461_INS [dm3] 2L_12912461_INS [dm6]	A	AAATGTAA	5.012e^-4	0.905	UPSTREAM ACXC INTERGENIC
3R	12625742	3R_12625742_SNP [dm3] 3R_16800020_SNP [dm6]	C	T	5.013e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	14065464	3R_14065464_SNP [dm3] 3R_18239742_SNP [dm6]	A	G	5.020e^-4	0.905	UTR_3_PRIME CG7156 DOWNSTREAM repo
3R	15787411	3R_15787411_SNP [dm3] 3R_19961689_SNP [dm6]	A	T	5.028e^-4	0.905	INTRON Hs6st
3R	7747776	3R_7747776_SNP [dm3] 3R_11922054_SNP [dm6]	G	A	5.046e^-4	0.905	INTRON Cad87A
2R	6681139	2R_6681139_SNP [dm3] 2R_10793634_SNP [dm6]	G	A	5.052e^-4	0.905	DOWNSTREAM mthl13 INTRON CG33144
3L	18099093	3L_18099093_SNP [dm3] 3L_18105993_SNP [dm6]	A	T	5.057e^-4	0.905	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8810692	3L_8810692_SNP [dm3] 3L_8817592_SNP [dm6]	C	A	5.063e^-4	0.905	INTERGENIC
X	9836337	X_9836337_SNP [dm3] X_9942304_SNP [dm6]	C	A	5.063e^-4	0.905	INTERGENIC
3R	26937590	3R_26937590_SNP [dm3] 3R_31111868_SNP [dm6]	T	C	5.074e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10634085	3R_10634085_SNP [dm3] 3R_14808363_SNP [dm6]	C	T	5.075e^-4	0.905	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10634091	3R_10634091_SNP [dm3] 3R_14808369_SNP [dm6]	G	A	5.075e^-4	0.905	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	21669170	3L_21669170_SNP [dm3] 3L_21676070_SNP [dm6]	G	C	5.078e^-4	0.905	NON_SYNONYMOUS_CODING CG7158	TF binding site mE1_TFBS_cad
X	12424558	X_12424558_SNP [dm3] X_12530525_SNP [dm6]	A	G	5.084e^-4	0.905	INTRON CG43921
2R	9203412	2R_9203412_SNP [dm3] 2R_13315907_SNP [dm6]	T	C	5.092e^-4	0.905	INTERGENIC
3R	20714006	3R_20714006_SNP [dm3] 3R_24888284_SNP [dm6]	C	T	5.098e^-4	0.905	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13251754	3R_13251754_SNP [dm3] 3R_17426032_SNP [dm6]	T	C	5.101e^-4	0.905	UTR_5_PRIME CG5873	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	12625732	3R_12625732_SNP [dm3] 3R_16800010_SNP [dm6]	A	T	5.112e^-4	0.905	UPSTREAM CR45750 INTERGENIC
3R	26898465	3R_26898465_SNP [dm3] 3R_31072743_SNP [dm6]	T	C	5.116e^-4	0.905	INTRON Sox100B
2L	10002772	2L_10002772_SNP [dm3] 2L_10002772_SNP [dm6]	T	A	5.118e^-4	0.905	UPSTREAM SoYb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14478337	2L_14478337_SNP [dm3] 2L_14478337_SNP [dm6]	C	T	5.120e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	9249355	3L_9249355_SNP [dm3] 3L_9256255_SNP [dm6]	G	A	5.137e^-4	0.905	UTR_5_PRIME GluRIB
3R	19325037	3R_19325037_SNP [dm3] 3R_23499315_SNP [dm6]	T	G	5.139e^-4	0.905	INTERGENIC
3R	18591705	3R_18591705_SNP [dm3] 3R_22765983_SNP [dm6]	G	T	5.139e^-4	0.905	SYNONYMOUS_CODING CG4721 DOWNSTREAM CG13841 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
3R	26927413	3R_26927413_SNP [dm3] 3R_31101691_SNP [dm6]	G	A	5.165e^-4	0.905	UPSTREAM CG15553 INTERGENIC
2R	5860890	2R_5860890_SNP [dm3] 2R_9973385_SNP [dm6]	A	C	5.167e^-4	0.905	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	11634900	2L_11634900_SNP [dm3] 2L_11634900_SNP [dm6]	C	T	5.170e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24820398	3R_24820398_SNP [dm3] 3R_28994676_SNP [dm6]	G	A	5.174e^-4	0.905	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11756049	2L_11756049_SNP [dm3] 2L_11756049_SNP [dm6]	A	G	5.176e^-4	0.905	INTERGENIC
3R	19323718	3R_19323718_DEL [dm3] 3R_23497996_DEL [dm6]	TCTGTGGGTCAGATTGACCG...	T	5.181e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11751460	3R_11751460_SNP [dm3] 3R_15925738_SNP [dm6]	G	A	5.184e^-4	0.905	UTR_5_PRIME CG34276 UPSTREAM CG34276 INTRON CG4221
X	19416192	X_19416192_SNP [dm3] X_19522159_SNP [dm6]	T	C	5.195e^-4	0.905	UTR_5_PRIME CoRest UPSTREAM l_1_G0156 INTRON CoRest	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	4904049	3R_4904049_SNP [dm3] 3R_9078327_SNP [dm6]	T	A	5.206e^-4	0.905	INTRON pum
3R	12660512	3R_12660512_SNP [dm3] 3R_16834790_SNP [dm6]	A	G	5.210e^-4	0.905	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11863907	3R_11863907_SNP [dm3] 3R_16038185_SNP [dm6]	C	T	5.212e^-4	0.905	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3457879	X_3457879_SNP [dm3] X_3563846_SNP [dm6]	A	G	5.219e^-4	0.905	INTRON CG32791 & 1 other
3R	21298931	3R_21298931_SNP [dm3] 3R_25473209_SNP [dm6]	A	G	5.223e^-4	0.905	UPSTREAM Vps33B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7041929	2L_7041929_SNP [dm3] 2L_7041929_SNP [dm6]	A	T	5.231e^-4	0.905	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19443045	X_19443045_SNP [dm3] X_19549012_SNP [dm6]	G	T	5.235e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4157013	2L_4157013_SNP [dm3] 2L_4157013_SNP [dm6]	A	T	5.238e^-4	0.905	INTERGENIC
2R	7072353	2R_7072353_SNP [dm3] 2R_11184848_SNP [dm6]	A	C	5.246e^-4	0.905	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Cuticul_5_C24_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results