DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.621e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09457

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1910 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11967139	3L_11967139_SNP [dm3] 3L_11974039_SNP [dm6]	A	T	1.301e^-7	0.094	UPSTREAM CG42397 & 1 other INTERGENIC
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	1.437e^-7	0.094	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11967156	3L_11967156_SNP [dm3] 3L_11974056_SNP [dm6]	T	C	1.506e^-7	0.094	UPSTREAM CG42397 & 1 other INTERGENIC
3L	5988869	3L_5988869_INS [dm3] 3L_5995769_INS [dm6]	G	GCAGG	1.692e^-6	0.493	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23969845	3R_23969845_SNP [dm3] 3R_28144123_SNP [dm6]	A	T	2.496e^-6	0.493	INTERGENIC
3R	25387833	3R_25387833_SNP [dm3] 3R_29562111_SNP [dm6]	T	G	2.553e^-6	0.493	INTRON Dr
3R	25919032	3R_25919032_SNP [dm3] 3R_30093310_SNP [dm6]	C	T	2.766e^-6	0.493	INTRON sima
3L	9102730	3L_9102730_SNP [dm3] 3L_9109630_SNP [dm6]	A	C	2.905e^-6	0.493	INTRON bol
3R	19590175	3R_19590175_SNP [dm3] 3R_23764453_SNP [dm6]	G	T	3.072e^-6	0.493	SYNONYMOUS_CODING Lsd-1 START_GAINED Lsd-1 UTR_5_PRIME Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25372305	3R_25372305_SNP [dm3] 3R_29546583_SNP [dm6]	A	T	3.127e^-6	0.493	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8530718	X_8530718_SNP [dm3] X_8636685_SNP [dm6]	C	A	3.694e^-6	0.493	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25919311	3R_25919311_SNP [dm3] 3R_30093589_SNP [dm6]	G	A	3.740e^-6	0.493	INTRON sima
3L	13466794	3L_13466794_SNP [dm3] 3L_13473694_SNP [dm6]	G	C	3.765e^-6	0.493	INTRON CG10089
3L	11172885	3L_11172885_SNP [dm3] 3L_11179785_SNP [dm6]	G	A	3.848e^-6	0.493	INTRON GlcAT-P
3R	25934000	3R_25934000_SNP [dm3] 3R_30108278_SNP [dm6]	C	G	4.104e^-6	0.493	INTRON sima	TF binding site mE1_TFBS_inv
2L	12489325	2L_12489325_SNP [dm3] 2L_12489325_SNP [dm6]	G	C	4.423e^-6	0.493	INTRON bun	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23969846	3R_23969846_SNP [dm3] 3R_28144124_SNP [dm6]	A	C	4.494e^-6	0.493	INTERGENIC
3R	13714710	3R_13714710_SNP [dm3] 3R_17888988_SNP [dm6]	C	T	4.728e^-6	0.493	INTRON Rim
3R	27166882	3R_27166882_INS [dm3] 3R_31341160_INS [dm6]	C	CGC	5.570e^-6	0.55	INTRON CG34347
3R	25372307	3R_25372307_SNP [dm3] 3R_29546585_SNP [dm6]	G	T	6.320e^-6	0.589	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	6.593e^-6	0.589	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13714805	3R_13714805_SNP [dm3] 3R_17889083_SNP [dm6]	T	G	8.365e^-6	0.69	INTRON Rim
2R	20106169	2R_20106169_SNP [dm3] 2R_24218646_SNP [dm6]	A	G	8.462e^-6	0.69	INTRON CG30419
3L	11017013	3L_11017013_SNP [dm3] 3L_11023913_SNP [dm6]	C	A	8.846e^-6	0.691	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4846164	3L_4846164_SNP [dm3] 3L_4846164_SNP [dm6]	A	C	9.294e^-6	0.697	INTERGENIC
3L	4846156	3L_4846156_SNP [dm3] 3L_4846156_SNP [dm6]	A	C	1.027e^-5	0.701	INTERGENIC
3L	11223576	3L_11223576_DEL [dm3] 3L_11230476_DEL [dm6]	ACAAA	A	1.038e^-5	0.701	UTR_3_PRIME CG42671 DOWNSTREAM CG42671 & 1 other
2L	13819846	2L_13819846_SNP [dm3] 2L_13819846_SNP [dm6]	A	G	1.097e^-5	0.701	DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25933477	3R_25933477_SNP [dm3] 3R_30107755_SNP [dm6]	C	T	1.179e^-5	0.701	INTRON sima
2L	12403814	2L_12403814_SNP [dm3] 2L_12403814_SNP [dm6]	G	C	1.215e^-5	0.701	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25917094	3R_25917094_SNP [dm3] 3R_30091372_SNP [dm6]	A	T	1.222e^-5	0.701	INTRON sima	TF binding site mE1_TFBS_Trl
3L	5988949	3L_5988949_SNP [dm3] 3L_5995849_SNP [dm6]	C	T	1.269e^-5	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25915748	3R_25915748_SNP [dm3] 3R_30090026_SNP [dm6]	T	A	1.270e^-5	0.701	INTRON sima	TF binding site mE1_TFBS_Trl
3R	18510949	3R_18510949_SNP [dm3] 3R_22685227_SNP [dm6]	G	A	1.270e^-5	0.701	UTR_3_PRIME Gclm DOWNSTREAM Gclm
3R	25394321	3R_25394321_SNP [dm3] 3R_29568599_SNP [dm6]	T	G	1.459e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11967835	3L_11967835_SNP [dm3] 3L_11974735_SNP [dm6]	T	G	1.466e^-5	0.718	UPSTREAM CG42397 & 1 other INTERGENIC
3L	11967796	3L_11967796_SNP [dm3] 3L_11974696_SNP [dm6]	A	T	1.467e^-5	0.718	UPSTREAM CG42397 & 1 other INTERGENIC
3R	12625669	3R_12625669_DEL [dm3] 3R_16799947_DEL [dm6]	AAGT	A	1.580e^-5	0.718	UPSTREAM CR45750 INTERGENIC
3R	12625674	3R_12625674_SNP [dm3] 3R_16799952_SNP [dm6]	G	T	1.580e^-5	0.718	UPSTREAM CR45750 INTERGENIC
3L	13464630	3L_13464630_SNP [dm3] 3L_13471530_SNP [dm6]	G	A	1.589e^-5	0.718	INTRON CG10089
3L	11172923	3L_11172923_SNP [dm3] 3L_11179823_SNP [dm6]	A	G	1.603e^-5	0.718	INTRON GlcAT-P
3L	1065801	3L_1065801_SNP [dm3] 3L_1065801_SNP [dm6]	G	C	1.624e^-5	0.718	INTRON bab1
3L	11020960	3L_11020960_SNP [dm3] 3L_11027860_SNP [dm6]	G	A	1.647e^-5	0.718	NON_SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3R	21279908	3R_21279908_SNP [dm3] 3R_25454186_SNP [dm6]	T	C	1.700e^-5	0.719	INTRON Fur1
2L	3021662	2L_3021662_SNP [dm3] 2L_3021662_SNP [dm6]	C	T	1.769e^-5	0.719	UTR_3_PRIME alpha4GT1 DOWNSTREAM CG17264
2R	5262516	2R_5262516_SNP [dm3] 2R_9375011_SNP [dm6]	T	C	1.788e^-5	0.719	INTRON CG13954	TF binding site mE1_TFBS_cad
3L	10737919	3L_10737919_SNP [dm3] 3L_10744819_SNP [dm6]	A	C	1.806e^-5	0.719	INTERGENIC
3R	19130852	3R_19130852_SNP [dm3] 3R_23305130_SNP [dm6]	A	C	1.921e^-5	0.719	INTRON pnt
3R	12625675	3R_12625675_DEL [dm3] 3R_16799953_DEL [dm6]	AAAGACAAAGCCCGC...	A	2.046e^-5	0.719	UPSTREAM CR45750 INTERGENIC
3R	12625691	3R_12625691_MNP [dm3] 3R_16799969_MNP [dm6]	GAG	TGT	2.046e^-5	0.719	UPSTREAM CR45750 INTERGENIC
3R	26392635	3R_26392635_DEL [dm3] 3R_30566913_DEL [dm6]	GG	G	2.123e^-5	0.719	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18808589	2L_18808589_SNP [dm3] 2L_18808589_SNP [dm6]	C	T	2.236e^-5	0.719	DOWNSTREAM CG42502 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	25927798	3R_25927798_SNP [dm3] 3R_30102076_SNP [dm6]	A	C	2.238e^-5	0.719	INTRON sima
2L	12195422	2L_12195422_SNP [dm3] 2L_12195422_SNP [dm6]	A	G	2.239e^-5	0.719	INTRON aret
2R	16019985	2R_16019985_SNP [dm3] 2R_20132480_SNP [dm6]	C	G	2.264e^-5	0.719	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20554424	3L_20554424_SNP [dm3] 3L_20561324_SNP [dm6]	A	C	2.269e^-5	0.719	INTERGENIC
2R	12214457	2R_12214457_SNP [dm3] 2R_16326952_SNP [dm6]	A	G	2.279e^-5	0.719	INTRON Vha44
2L	12403835	2L_12403835_SNP [dm3] 2L_12403835_SNP [dm6]	C	T	2.285e^-5	0.719	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10766070	2L_10766070_DEL [dm3] 2L_10766070_DEL [dm6]	GTTG	G	2.302e^-5	0.719	UTR_3_PRIME UbcD2
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	2.319e^-5	0.719	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	5988886	3L_5988886_SNP [dm3] 3L_5995786_SNP [dm6]	C	G	2.375e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13714693	3R_13714693_SNP [dm3] 3R_17888971_SNP [dm6]	A	G	2.378e^-5	0.719	INTRON Rim
2R	9736966	2R_9736966_SNP [dm3] 2R_13849461_SNP [dm6]	A	G	2.437e^-5	0.725	SPLICE_SITE_REGION CG30484 UPSTREAM CG30485 INTRON CG30484
3R	19126526	3R_19126526_SNP [dm3] 3R_23300804_SNP [dm6]	A	G	2.529e^-5	0.731	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11017325	3L_11017325_SNP [dm3] 3L_11024225_SNP [dm6]	C	G	2.585e^-5	0.731	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	19890700	X_19890700_SNP [dm3] X_19996667_SNP [dm6]	C	G	2.672e^-5	0.731	INTERGENIC
X	10798932	X_10798932_MNP [dm3] X_10904899_MNP [dm6]	ATCAG	GGGTA	2.695e^-5	0.731	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10798939	X_10798939_DEL [dm3] X_10904906_DEL [dm6]	TTTATGTTC	T	2.695e^-5	0.731	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11297944	3L_11297944_SNP [dm3] 3L_11304844_SNP [dm6]	T	G	2.739e^-5	0.731	INTERGENIC
X	11069407	X_11069407_SNP [dm3] X_11175374_SNP [dm6]	T	C	2.753e^-5	0.731	INTERGENIC
2L	10275074	2L_10275074_SNP [dm3] 2L_10275074_SNP [dm6]	A	T	2.785e^-5	0.731	SPLICE_SITE_REGION Utx INTRON Utx
3L	8199668	3L_8199668_SNP [dm3] 3L_8206568_SNP [dm6]	T	A	2.807e^-5	0.731	INTERGENIC
X	2924894	X_2924894_SNP [dm3] X_3030861_SNP [dm6]	A	G	2.855e^-5	0.733	INTRON kirre
X	12951187	X_12951187_SNP [dm3] X_13057154_SNP [dm6]	A	G	2.953e^-5	0.741	INTRON rad
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	2.988e^-5	0.741	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
3L	11017597	3L_11017597_SNP [dm3] 3L_11024497_SNP [dm6]	T	C	3.003e^-5	0.741	NON_SYNONYMOUS_CODING Fad2
2L	18159458	2L_18159458_SNP [dm3] 2L_18159458_SNP [dm6]	C	G	3.040e^-5	0.741	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
X	19890698	X_19890698_SNP [dm3] X_19996665_SNP [dm6]	C	G	3.101e^-5	0.746	INTERGENIC
3L	11967127	3L_11967127_SNP [dm3] 3L_11974027_SNP [dm6]	G	A	3.208e^-5	0.762	UPSTREAM CG42397 & 1 other INTERGENIC
3L	13464113	3L_13464113_SNP [dm3] 3L_13471013_SNP [dm6]	C	T	3.252e^-5	0.762	INTRON CG10089	TF binding site mE1_TFBS_cad
X	8290127	X_8290127_SNP [dm3] X_8396094_SNP [dm6]	G	A	3.317e^-5	0.765	INTERGENIC
3R	19130829	3R_19130829_SNP [dm3] 3R_23305107_SNP [dm6]	A	G	3.345e^-5	0.765	INTRON pnt
3R	19146694	3R_19146694_SNP [dm3] 3R_23320972_SNP [dm6]	G	A	3.423e^-5	0.774	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9198748	2R_9198748_SNP [dm3] 2R_13311243_SNP [dm6]	C	T	3.476e^-5	0.776	INTERGENIC
3R	9296977	3R_9296977_SNP [dm3] 3R_13471255_SNP [dm6]	C	G	3.573e^-5	0.781	INTERGENIC
3R	16674156	3R_16674156_SNP [dm3] 3R_20848434_SNP [dm6]	T	C	3.691e^-5	0.781	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9731067	2L_9731067_SNP [dm3] 2L_9731067_SNP [dm6]	T	C	3.692e^-5	0.781	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	16674011	3R_16674011_SNP [dm3] 3R_20848289_SNP [dm6]	G	A	3.845e^-5	0.781	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18349623	2L_18349623_SNP [dm3] 2L_18349623_SNP [dm6]	C	T	3.923e^-5	0.781	INTRON Fas3	TF binding site mE1_TFBS_inv
3L	14848518	3L_14848518_DEL [dm3] 3L_14855418_DEL [dm6]	AA	A	3.940e^-5	0.781	INTRON CG17839
2L	1630051	2L_1630051_SNP [dm3] 2L_1630051_SNP [dm6]	C	G	3.980e^-5	0.781	INTERGENIC
2L	12509860	2L_12509860_SNP [dm3] 2L_12509860_SNP [dm6]	C	T	4.018e^-5	0.781	INTRON bun
3R	25915769	3R_25915769_SNP [dm3] 3R_30090047_SNP [dm6]	T	A	4.021e^-5	0.781	INTRON sima	TF binding site mE1_TFBS_Trl
3L	5124281	3L_5124281_SNP [dm3] 3L_5131181_SNP [dm6]	C	G	4.083e^-5	0.781	UPSTREAM CG15212 DOWNSTREAM CG4597 INTERGENIC
X	3915222	X_3915222_SNP [dm3] X_4021189_SNP [dm6]	C	T	4.166e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	2924827	X_2924827_SNP [dm3] X_3030794_SNP [dm6]	G	C	4.202e^-5	0.781	INTRON kirre
2L	10860898	2L_10860898_SNP [dm3] 2L_10860898_SNP [dm6]	G	A	4.208e^-5	0.781	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad
3L	7547964	3L_7547964_SNP [dm3] 3L_7554864_SNP [dm6]	G	A	4.358e^-5	0.781	DOWNSTREAM CG14837 INTERGENIC
3R	3413144	3R_3413144_SNP [dm3] 3R_7587422_SNP [dm6]	T	C	4.431e^-5	0.781	INTRON CG34127	TF binding site mE1_TFBS_inv
X	9075338	X_9075338_SNP [dm3] X_9181305_SNP [dm6]	A	C	4.563e^-5	0.781	UTR_3_PRIME mei-P26
2L	2481093	2L_2481093_SNP [dm3] 2L_2481093_SNP [dm6]	C	T	4.581e^-5	0.781	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	14418211	2R_14418211_SNP [dm3] 2R_18530706_SNP [dm6]	C	A	4.637e^-5	0.781	INTRON CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10173373	X_10173373_SNP [dm3] X_10279340_SNP [dm6]	T	C	4.693e^-5	0.781	INTRON alpha-Man-I
3R	16549069	3R_16549069_DEL [dm3] 3R_20723347_DEL [dm6]	CCCT	C	4.754e^-5	0.781	INTERGENIC
2L	8585011	2L_8585011_SNP [dm3] 2L_8585011_SNP [dm6]	T	C	4.786e^-5	0.781	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3R	2490628	3R_2490628_SNP [dm3] 3R_6664906_SNP [dm6]	T	A	4.791e^-5	0.781	INTRON lab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11967774	3L_11967774_SNP [dm3] 3L_11974674_SNP [dm6]	A	G	4.900e^-5	0.781	UPSTREAM CG42397 & 1 other INTERGENIC
X	8023349	X_8023349_SNP [dm3] X_8129316_SNP [dm6]	T	C	4.932e^-5	0.781	UPSTREAM CG2116 & 1 other INTRON cyr	TF binding site BDTNP1_TFBS_dl
2R	8650096	2R_8650096_SNP [dm3] 2R_12762591_SNP [dm6]	A	T	4.995e^-5	0.781	SYNONYMOUS_CODING CG12374	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15863824	2R_15863824_SNP [dm3] 2R_19976319_SNP [dm6]	C	T	4.999e^-5	0.781	INTERGENIC
2R	1599723	2R_1599723_SNP [dm3] 2R_5712218_SNP [dm6]	G	T	5.014e^-5	0.781	INTRON ap	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	3418792	2L_3418792_SNP [dm3] 2L_3418792_SNP [dm6]	T	C	5.045e^-5	0.781	DOWNSTREAM CG31952 INTRON pgant2
2L	4384237	2L_4384237_SNP [dm3] 2L_4384237_SNP [dm6]	T	G	5.056e^-5	0.781	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
3L	8219145	3L_8219145_SNP [dm3] 3L_8226045_SNP [dm6]	G	A	5.059e^-5	0.781	INTERGENIC
2L	18317060	2L_18317060_SNP [dm3] 2L_18317060_SNP [dm6]	G	C	5.062e^-5	0.781	INTERGENIC
3R	14269200	3R_14269200_SNP [dm3] 3R_18443478_SNP [dm6]	T	C	5.106e^-5	0.781	INTRON fru
3R	18240992	3R_18240992_SNP [dm3] 3R_22415270_SNP [dm6]	C	A	5.122e^-5	0.781	SYNONYMOUS_CODING lqfR INTRON lqfR
3R	13714591	3R_13714591_SNP [dm3] 3R_17888869_SNP [dm6]	C	T	5.132e^-5	0.781	INTRON Rim
2L	15163886	2L_15163886_SNP [dm3] 2L_15163886_SNP [dm6]	A	T	5.134e^-5	0.781	INTRON CG4168
2L	3030035	2L_3030035_SNP [dm3] 2L_3030035_SNP [dm6]	G	A	5.142e^-5	0.781	SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	5.146e^-5	0.781	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3L	11297954	3L_11297954_SNP [dm3] 3L_11304854_SNP [dm6]	G	T	5.148e^-5	0.781	INTERGENIC
3R	21375086	3R_21375086_SNP [dm3] 3R_25549364_SNP [dm6]	A	T	5.169e^-5	0.781	INTRON msi
3R	16554092	3R_16554092_SNP [dm3] 3R_20728370_SNP [dm6]	G	A	5.201e^-5	0.781	INTERGENIC
X	8290118	X_8290118_SNP [dm3] X_8396085_SNP [dm6]	G	T	5.202e^-5	0.781	INTERGENIC
3L	9660429	3L_9660429_SNP [dm3] 3L_9667329_SNP [dm6]	A	T	5.325e^-5	0.785	INTRON fry
3R	12601481	3R_12601481_DEL [dm3] 3R_16775759_DEL [dm6]	GG	G	5.337e^-5	0.785	INTERGENIC
3R	17744217	3R_17744217_SNP [dm3] 3R_21918495_SNP [dm6]	T	C	5.355e^-5	0.785	INTERGENIC
2L	3418789	2L_3418789_SNP [dm3] 2L_3418789_SNP [dm6]	G	T	5.489e^-5	0.798	DOWNSTREAM CG31952 INTRON pgant2
3R	6282506	3R_6282506_SNP [dm3] 3R_10456784_SNP [dm6]	C	A	5.554e^-5	0.8	INTERGENIC
3L	11070624	3L_11070624_SNP [dm3] 3L_11077524_SNP [dm6]	A	G	5.607e^-5	0.8	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5780338	3L_5780338_SNP [dm3] 3L_5787238_SNP [dm6]	C	T	5.633e^-5	0.8	UPSTREAM Cralbp INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12925832	2L_12925832_SNP [dm3] 2L_12925832_SNP [dm6]	T	C	5.727e^-5	0.808	SYNONYMOUS_CODING ACXE DOWNSTREAM ACXA
2R	10342866	2R_10342866_SNP [dm3] 2R_14455361_SNP [dm6]	C	G	5.819e^-5	0.808	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19589000	3R_19589000_DEL [dm3] 3R_23763278_DEL [dm6]	TAGCT	T	5.844e^-5	0.808	UPSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	14838840	2L_14838840_SNP [dm3] 2L_14838840_SNP [dm6]	C	T	5.910e^-5	0.808	INTERGENIC
X	7489936	X_7489936_SNP [dm3] X_7595903_SNP [dm6]	G	A	5.923e^-5	0.808	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
2R	14985355	2R_14985355_SNP [dm3] 2R_19097850_SNP [dm6]	C	A	5.946e^-5	0.808	INTRON 5-HT1A
2L	3012546	2L_3012546_SNP [dm3] 2L_3012546_SNP [dm6]	G	C	6.064e^-5	0.808	INTRON CG17265	TF binding site mE1_TFBS_inv
2L	16606171	2L_16606171_SNP [dm3] 2L_16606171_SNP [dm6]	A	T	6.103e^-5	0.808	NON_SYNONYMOUS_CODING CG31815 INTRON CG42389
2L	9101371	2L_9101371_SNP [dm3] 2L_9101371_SNP [dm6]	T	C	6.150e^-5	0.808	INTERGENIC
3R	18241011	3R_18241011_SNP [dm3] 3R_22415289_SNP [dm6]	A	G	6.202e^-5	0.808	NON_SYNONYMOUS_CODING lqfR INTRON lqfR
2R	13531220	2R_13531220_SNP [dm3] 2R_17643715_SNP [dm6]	C	T	6.204e^-5	0.808	INTERGENIC
2R	11856976	2R_11856976_SNP [dm3] 2R_15969471_SNP [dm6]	C	T	6.241e^-5	0.808	NON_SYNONYMOUS_CODING Strn-Mlck
2L	12925932	2L_12925932_SNP [dm3] 2L_12925932_SNP [dm6]	G	A	6.360e^-5	0.808	DOWNSTREAM ACXA INTRON ACXE
2R	17755436	2R_17755436_INS [dm3] 2R_21867931_INS [dm6]	C	CC	6.400e^-5	0.808	INTERGENIC
2L	15769051	2L_15769051_SNP [dm3] 2L_15769051_SNP [dm6]	C	A	6.432e^-5	0.808	SYNONYMOUS_CODING Ku80 UPSTREAM wek
2R	17445006	2R_17445006_SNP [dm3] 2R_21557501_SNP [dm6]	A	G	6.447e^-5	0.808	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13725097	2R_13725097_SNP [dm3] 2R_17837592_SNP [dm6]	G	C	6.489e^-5	0.808	INTRON grh	TF binding site BDTNP1_TFBS_da
3R	15290264	3R_15290264_DEL [dm3] 3R_19464542_DEL [dm6]	AA	A	6.522e^-5	0.808	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17242258	2R_17242258_SNP [dm3] 2R_21354753_SNP [dm6]	G	T	6.544e^-5	0.808	DOWNSTREAM cv-2 INTERGENIC
3R	16675146	3R_16675146_SNP [dm3] 3R_20849424_SNP [dm6]	C	T	6.603e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	754114	2L_754114_SNP [dm3] 2L_754114_SNP [dm6]	G	A	6.626e^-5	0.808	INTRON GABA-B-R3
X	18281664	X_18281664_SNP [dm3] X_18387631_SNP [dm6]	C	T	6.633e^-5	0.808	UTR_5_PRIME Tsf1 UPSTREAM Tsf1
3L	19235573	3L_19235573_SNP [dm3] 3L_19242473_SNP [dm6]	C	T	6.793e^-5	0.815	INTERGENIC
2R	12333283	2R_12333283_SNP [dm3] 2R_16445778_SNP [dm6]	C	A	6.845e^-5	0.815	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
3R	9296974	3R_9296974_SNP [dm3] 3R_13471252_SNP [dm6]	T	A	6.861e^-5	0.815	INTERGENIC
2R	5190152	2R_5190152_SNP [dm3] 2R_9302647_SNP [dm6]	G	A	6.888e^-5	0.815	UTR_3_PRIME Drep-2 DOWNSTREAM Myd88 & 1 other
2L	2821400	2L_2821400_SNP [dm3] 2L_2821400_SNP [dm6]	C	T	6.933e^-5	0.815	INTRON Duox
X	10798927	X_10798927_SNP [dm3] X_10904894_SNP [dm6]	A	G	6.954e^-5	0.815	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22161993	3R_22161993_DEL [dm3] 3R_26336271_DEL [dm6]	GG	A	7.088e^-5	0.816	INTRON CG33970
X	11342876	X_11342876_SNP [dm3] X_11448843_SNP [dm6]	T	A	7.098e^-5	0.816	INTRON Evi5	TF binding site BDTNP1_TFBS_dl
2L	2708023	2L_2708023_SNP [dm3] 2L_2708023_SNP [dm6]	C	A	7.248e^-5	0.816	INTRON CG31690
3R	9296963	3R_9296963_DEL [dm3] 3R_13471241_DEL [dm6]	GAGCTGGG	T	7.270e^-5	0.816	INTERGENIC
3R	9296978	3R_9296978_DEL [dm3] 3R_13471256_DEL [dm6]	TGTAACCTATCT...	T	7.270e^-5	0.816	INTERGENIC
3R	12683488	3R_12683488_SNP [dm3] 3R_16857766_SNP [dm6]	A	G	7.277e^-5	0.816	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5383345	X_5383345_SNP [dm3] X_5489312_SNP [dm6]	G	C	7.398e^-5	0.816	INTRON SPR
2R	10345579	2R_10345579_SNP [dm3] 2R_14458074_SNP [dm6]	C	T	7.436e^-5	0.816	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12817166	2R_12817166_SNP [dm3] 2R_16929661_SNP [dm6]	G	C	7.445e^-5	0.816	INTRON Pkc53E
3R	6131492	3R_6131492_SNP [dm3] 3R_10305770_SNP [dm6]	A	G	7.536e^-5	0.816	NON_SYNONYMOUS_CODING CG43143
3L	11615772	3L_11615772_SNP [dm3] 3L_11622672_SNP [dm6]	G	C	7.622e^-5	0.816	INTRON CG6084
2L	18316420	2L_18316420_SNP [dm3] 2L_18316420_SNP [dm6]	T	A	7.877e^-5	0.816	INTERGENIC
2R	9198674	2R_9198674_SNP [dm3] 2R_13311169_SNP [dm6]	T	A	7.909e^-5	0.816	INTERGENIC
3R	12650702	3R_12650702_SNP [dm3] 3R_16824980_SNP [dm6]	T	C	7.988e^-5	0.816	INTRON abd-A
3L	12464851	3L_12464851_INS [dm3] 3L_12471751_INS [dm6]	G	GG	7.994e^-5	0.816	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	13493823	2L_13493823_SNP [dm3] 2L_13493823_SNP [dm6]	C	T	8.016e^-5	0.816	INTRON CG42784
3R	9296972	3R_9296972_SNP [dm3] 3R_13471250_SNP [dm6]	T	A	8.040e^-5	0.816	INTERGENIC
2R	8975508	2R_8975508_SNP [dm3] 2R_13088003_SNP [dm6]	A	T	8.087e^-5	0.816	INTERGENIC
3R	16674100	3R_16674100_DEL [dm3] 3R_20848378_DEL [dm6]	AAC	A	8.264e^-5	0.816	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10342865	2R_10342865_SNP [dm3] 2R_14455360_SNP [dm6]	G	T	8.271e^-5	0.816	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12290610	3L_12290610_SNP [dm3] 3L_12297510_SNP [dm6]	A	C	8.339e^-5	0.816	INTERGENIC
2R	12834893	2R_12834893_SNP [dm3] 2R_16947388_SNP [dm6]	T	G	8.408e^-5	0.816	SYNONYMOUS_CODING CG34190 DOWNSTREAM Vha16-4 & 2 others
2R	11857018	2R_11857018_SNP [dm3] 2R_15969513_SNP [dm6]	T	C	8.416e^-5	0.816	NON_SYNONYMOUS_CODING Strn-Mlck
3R	19125314	3R_19125314_SNP [dm3] 3R_23299592_SNP [dm6]	G	T	8.514e^-5	0.816	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	12954528	3R_12954528_SNP [dm3] 3R_17128806_SNP [dm6]	T	C	8.566e^-5	0.816	SYNONYMOUS_CODING CG31265 UPSTREAM CR44238 DOWNSTREAM CG31269 & 1 other
2L	3012435	2L_3012435_SNP [dm3] 2L_3012435_SNP [dm6]	G	A	8.606e^-5	0.816	INTRON CG17265	TF binding site mE1_TFBS_inv
X	14383580	X_14383580_SNP [dm3] X_14489547_SNP [dm6]	T	A	8.628e^-5	0.816	INTERGENIC
2R	1599847	2R_1599847_SNP [dm3] 2R_5712342_SNP [dm6]	A	T	8.698e^-5	0.816	INTRON ap	TF binding site mE1_TFBS_HSA
3R	18240993	3R_18240993_SNP [dm3] 3R_22415271_SNP [dm6]	C	T	8.703e^-5	0.816	SYNONYMOUS_CODING lqfR INTRON lqfR
3R	12625732	3R_12625732_SNP [dm3] 3R_16800010_SNP [dm6]	A	T	8.710e^-5	0.816	UPSTREAM CR45750 INTERGENIC
X	2924664	X_2924664_SNP [dm3] X_3030631_SNP [dm6]	T	A	8.720e^-5	0.816	INTRON kirre
3L	11016871	3L_11016871_SNP [dm3] 3L_11023771_SNP [dm6]	C	T	8.740e^-5	0.816	NON_SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5330849	3L_5330849_SNP [dm3] 3L_5337749_SNP [dm6]	G	A	8.816e^-5	0.816	INTERGENIC
3R	12604996	3R_12604996_SNP [dm3] 3R_16779274_SNP [dm6]	G	T	8.822e^-5	0.816	INTERGENIC
3R	19076618	3R_19076618_SNP [dm3] 3R_23250896_SNP [dm6]	T	C	8.857e^-5	0.816	NON_SYNONYMOUS_CODING CG4449 UPSTREAM EloA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	18323558	2L_18323558_SNP [dm3] 2L_18323558_SNP [dm6]	G	C	8.887e^-5	0.816	INTRON Fas3
2L	14813235	2L_14813235_SNP [dm3] 2L_14813235_SNP [dm6]	T	A	8.972e^-5	0.816	DOWNSTREAM CG33309 INTERGENIC
3R	17744049	3R_17744049_SNP [dm3] 3R_21918327_SNP [dm6]	T	C	9.167e^-5	0.816	INTERGENIC
3R	19131012	3R_19131012_SNP [dm3] 3R_23305290_SNP [dm6]	A	G	9.202e^-5	0.816	INTRON pnt
3L	11298089	3L_11298089_SNP [dm3] 3L_11304989_SNP [dm6]	C	T	9.218e^-5	0.816	INTERGENIC
2L	12925930	2L_12925930_SNP [dm3] 2L_12925930_SNP [dm6]	C	A	9.280e^-5	0.816	DOWNSTREAM ACXA INTRON ACXE
3R	9249010	3R_9249010_SNP [dm3] 3R_13423288_SNP [dm6]	A	G	9.417e^-5	0.816	DOWNSTREAM Ir87a INTERGENIC
X	6788142	X_6788142_SNP [dm3] X_6894109_SNP [dm6]	C	T	9.472e^-5	0.816	INTERGENIC
2L	3030254	2L_3030254_SNP [dm3] 2L_3030254_SNP [dm6]	A	C	9.489e^-5	0.816	SYNONYMOUS_CODING CG17219 UPSTREAM GABPI DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3L	19513616	3L_19513616_SNP [dm3] 3L_19520516_SNP [dm6]	A	G	9.518e^-5	0.816	UPSTREAM Cpr76Bc DOWNSTREAM Cpr76Bb INTERGENIC
2L	3030074	2L_3030074_SNP [dm3] 2L_3030074_SNP [dm6]	A	G	9.534e^-5	0.816	SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3R	16674061	3R_16674061_SNP [dm3] 3R_20848339_SNP [dm6]	T	A	9.664e^-5	0.816	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3030251	2L_3030251_SNP [dm3] 2L_3030251_SNP [dm6]	C	T	9.720e^-5	0.816	SYNONYMOUS_CODING CG17219 UPSTREAM GABPI DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3R	12626907	3R_12626907_SNP [dm3] 3R_16801185_SNP [dm6]	C	A	1.007e^-4	0.816	UPSTREAM CR45751 EXON CR45750	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	18241044	3R_18241044_SNP [dm3] 3R_22415322_SNP [dm6]	C	G	1.008e^-4	0.816	NON_SYNONYMOUS_CODING lqfR INTRON lqfR
2L	4384072	2L_4384072_SNP [dm3] 2L_4384072_SNP [dm6]	A	C	1.010e^-4	0.816	INTRON CG3338	TF binding site mE1_TFBS_cad
X	5383334	X_5383334_DEL [dm3] X_5489301_DEL [dm6]	TT	T	1.018e^-4	0.816	INTRON SPR
3R	19148950	3R_19148950_SNP [dm3] 3R_23323228_SNP [dm6]	G	T	1.026e^-4	0.816	INTRON pnt
X	9075056	X_9075056_SNP [dm3] X_9181023_SNP [dm6]	A	C	1.029e^-4	0.816	UTR_3_PRIME mei-P26
3R	12602294	3R_12602294_SNP [dm3] 3R_16776572_SNP [dm6]	A	G	1.035e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12603608	3R_12603608_SNP [dm3] 3R_16777886_SNP [dm6]	C	T	1.035e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12623400	3R_12623400_SNP [dm3] 3R_16797678_SNP [dm6]	G	T	1.035e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7456363	2R_7456363_SNP [dm3] 2R_11568858_SNP [dm6]	A	G	1.044e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12626442	3R_12626442_SNP [dm3] 3R_16800720_SNP [dm6]	C	G	1.045e^-4	0.816	UPSTREAM CR45751 EXON CR45750	enhancer mE1_CBP_Enhancers
2L	14595493	2L_14595493_SNP [dm3] 2L_14595493_SNP [dm6]	T	G	1.045e^-4	0.816	INTERGENIC
3L	17879831	3L_17879831_DEL [dm3] 3L_17886731_DEL [dm6]	TCATTCTT	T	1.047e^-4	0.816	UPSTREAM CG16775 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	1.048e^-4	0.816	UTR_3_PRIME ACXA UPSTREAM ACXE
X	6123669	X_6123669_SNP [dm3] X_6229636_SNP [dm6]	G	T	1.056e^-4	0.816	SYNONYMOUS_CODING CG14446
2L	12656513	2L_12656513_SNP [dm3] 2L_12656513_SNP [dm6]	C	G	1.058e^-4	0.816	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18285886	X_18285886_SNP [dm3] X_18391853_SNP [dm6]	G	A	1.063e^-4	0.816	SYNONYMOUS_CODING CG32549	TF binding site mE1_TFBS_chinmo
2L	5796056	2L_5796056_SNP [dm3] 2L_5796056_SNP [dm6]	T	C	1.063e^-4	0.816	INTRON CG9171
3R	12601772	3R_12601772_SNP [dm3] 3R_16776050_SNP [dm6]	T	C	1.068e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12625699	3R_12625699_DEL [dm3] 3R_16799977_DEL [dm6]	AACAAG	A	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12625707	3R_12625707_DEL [dm3] 3R_16799985_DEL [dm6]	TGGC	T	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12625714	3R_12625714_DEL [dm3] 3R_16799992_DEL [dm6]	TCTGGGCAGATAGGGC...	T	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12625733	3R_12625733_DEL [dm3] 3R_16800011_DEL [dm6]	TGGCTCC	T	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12625746	3R_12625746_DEL [dm3] 3R_16800024_DEL [dm6]	ATTTTGC	A	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12625758	3R_12625758_DEL [dm3] 3R_16800036_DEL [dm6]	TCG	T	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12625773	3R_12625773_SNP [dm3] 3R_16800051_SNP [dm6]	A	T	1.068e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12626182	3R_12626182_SNP [dm3] 3R_16800460_SNP [dm6]	A	G	1.068e^-4	0.816	UPSTREAM CR45750 & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers
2L	12509855	2L_12509855_SNP [dm3] 2L_12509855_SNP [dm6]	A	G	1.071e^-4	0.816	INTRON bun
X	18997422	X_18997422_SNP [dm3] X_19103389_SNP [dm6]	A	T	1.076e^-4	0.816	INTERGENIC
2R	12335964	2R_12335964_SNP [dm3] 2R_16448459_SNP [dm6]	A	T	1.077e^-4	0.816	DOWNSTREAM CG15925 INTERGENIC
2L	12923960	2L_12923960_SNP [dm3] 2L_12923960_SNP [dm6]	T	C	1.081e^-4	0.816	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	11999522	3L_11999522_SNP [dm3] 3L_12006422_SNP [dm6]	G	T	1.083e^-4	0.816	INTRON CG6928
3R	12634685	3R_12634685_SNP [dm3] 3R_16808963_SNP [dm6]	G	A	1.088e^-4	0.816	UTR_3_PRIME abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16674060	3R_16674060_SNP [dm3] 3R_20848338_SNP [dm6]	T	A	1.103e^-4	0.816	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6206548	2R_6206548_SNP [dm3] 2R_10319043_SNP [dm6]	C	G	1.103e^-4	0.816	DOWNSTREAM CG34222 INTRON Ndg	TF binding site mE1_TFBS_cad
3R	13714895	3R_13714895_SNP [dm3] 3R_17889173_SNP [dm6]	T	C	1.105e^-4	0.816	INTRON Rim
2L	12547848	2L_12547848_SNP [dm3] 2L_12547848_SNP [dm6]	C	G	1.106e^-4	0.816	INTERGENIC
2L	3027300	2L_3027300_SNP [dm3] 2L_3027300_SNP [dm6]	C	A	1.110e^-4	0.816	DOWNSTREAM CG3542 INTRON CG3605	TF binding site mE1_TFBS_sens
3R	16821254	3R_16821254_SNP [dm3] 3R_20995532_SNP [dm6]	T	G	1.111e^-4	0.816	INTRON Calx	TF binding site mE1_TFBS_chinmo
3L	8691358	3L_8691358_SNP [dm3] 3L_8698258_SNP [dm6]	C	A	1.117e^-4	0.816	INTERGENIC
X	2924670	X_2924670_SNP [dm3] X_3030637_SNP [dm6]	A	C	1.119e^-4	0.816	INTRON kirre
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	1.128e^-4	0.816	INTRON CG17839
2L	2678543	2L_2678543_SNP [dm3] 2L_2678543_SNP [dm6]	G	C	1.132e^-4	0.816	INTRON CG31690
2R	20105542	2R_20105542_SNP [dm3] 2R_24218019_SNP [dm6]	A	T	1.135e^-4	0.816	INTRON CG30419
2R	14985582	2R_14985582_SNP [dm3] 2R_19098077_SNP [dm6]	A	T	1.135e^-4	0.816	INTRON 5-HT1A
3L	11438227	3L_11438227_DEL [dm3] 3L_11445127_DEL [dm6]	GGG	TT	1.135e^-4	0.816	UPSTREAM CG7557 & 1 other INTERGENIC
3R	9251931	3R_9251931_SNP [dm3] 3R_13426209_SNP [dm6]	A	G	1.136e^-4	0.816	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
3R	12625742	3R_12625742_SNP [dm3] 3R_16800020_SNP [dm6]	C	T	1.136e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	12626004	3R_12626004_SNP [dm3] 3R_16800282_SNP [dm6]	G	T	1.138e^-4	0.816	UPSTREAM CR45750 INTERGENIC	enhancer mE1_CBP_Enhancers
2L	2762813	2L_2762813_SNP [dm3] 2L_2762813_SNP [dm6]	C	T	1.140e^-4	0.816	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077
2R	12817160	2R_12817160_SNP [dm3] 2R_16929655_SNP [dm6]	G	A	1.143e^-4	0.816	INTRON Pkc53E
3R	20546545	3R_20546545_SNP [dm3] 3R_24720823_SNP [dm6]	T	C	1.153e^-4	0.816	INTRON tok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12614787	3R_12614787_SNP [dm3] 3R_16789065_SNP [dm6]	C	T	1.160e^-4	0.816	NON_SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12625745	3R_12625745_SNP [dm3] 3R_16800023_SNP [dm6]	C	A	1.168e^-4	0.816	UPSTREAM CR45750 INTERGENIC
3R	16673943	3R_16673943_SNP [dm3] 3R_20848221_SNP [dm6]	G	T	1.172e^-4	0.816	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16581386	2L_16581386_SNP [dm3] 2L_16581386_SNP [dm6]	C	T	1.172e^-4	0.816	INTRON CG42389
X	14058222	X_14058222_SNP [dm3] X_14164189_SNP [dm6]	A	T	1.180e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	7597793	3L_7597793_SNP [dm3] 3L_7604693_SNP [dm6]	T	G	1.183e^-4	0.816	UPSTREAM CG33275 INTRON CG33275
3R	12600940	3R_12600940_SNP [dm3] 3R_16775218_SNP [dm6]	T	A	1.186e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16969962	2L_16969962_SNP [dm3] 2L_16969962_SNP [dm6]	G	C	1.188e^-4	0.816	INTERGENIC
3R	21375159	3R_21375159_INS [dm3] 3R_25549437_INS [dm6]	C	CC	1.188e^-4	0.816	INTRON msi
2R	15910629	2R_15910629_SNP [dm3] 2R_20023124_SNP [dm6]	A	G	1.190e^-4	0.816	INTERGENIC
3R	25991277	3R_25991277_SNP [dm3] 3R_30165555_SNP [dm6]	A	G	1.193e^-4	0.816	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10342859	2R_10342859_SNP [dm3] 2R_14455354_SNP [dm6]	T	C	1.198e^-4	0.816	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13044192	X_13044192_SNP [dm3] X_13150159_SNP [dm6]	C	A	1.198e^-4	0.816	SYNONYMOUS_CODING CG32645
3L	12975608	3L_12975608_SNP [dm3] 3L_12982508_SNP [dm6]	T	G	1.205e^-4	0.816	INTERGENIC
3L	11967677	3L_11967677_SNP [dm3] 3L_11974577_SNP [dm6]	G	T	1.205e^-4	0.816	UPSTREAM CG42397 & 1 other INTERGENIC
2L	10860042	2L_10860042_SNP [dm3] 2L_10860042_SNP [dm6]	G	C	1.207e^-4	0.816	SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12419829	X_12419829_DEL [dm3] X_12525796_DEL [dm6]	GAGTG	G	1.209e^-4	0.816	INTRON CG43921
3R	26580427	3R_26580427_SNP [dm3] 3R_30754705_SNP [dm6]	A	G	1.210e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1387056	2L_1387056_SNP [dm3] 2L_1387056_SNP [dm6]	C	T	1.213e^-4	0.816	INTRON lea
3L	13464384	3L_13464384_SNP [dm3] 3L_13471284_SNP [dm6]	C	T	1.228e^-4	0.821	INTRON CG10089
3R	26392642	3R_26392642_SNP [dm3] 3R_30566920_SNP [dm6]	G	A	1.234e^-4	0.821	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16220706	X_16220706_SNP [dm3] X_16326673_SNP [dm6]	A	C	1.235e^-4	0.821	DOWNSTREAM CG32579 INTRON CalpC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16488814	3R_16488814_SNP [dm3] 3R_20663092_SNP [dm6]	A	G	1.238e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3029996	2L_3029996_SNP [dm3] 2L_3029996_SNP [dm6]	G	A	1.248e^-4	0.821	SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	14230397	X_14230397_DEL [dm3] X_14336364_DEL [dm6]	GGAAGTTCTG	G	1.249e^-4	0.821	INTRON dpr8
3L	9335605	3L_9335605_SNP [dm3] 3L_9342505_SNP [dm6]	G	C	1.258e^-4	0.821	NON_SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14985592	2R_14985592_SNP [dm3] 2R_19098087_SNP [dm6]	T	G	1.272e^-4	0.821	INTRON 5-HT1A
3R	746431	3R_746431_SNP [dm3] 3R_4920709_SNP [dm6]	C	A	1.275e^-4	0.821	INTRON Cdep
3R	14043333	3R_14043333_SNP [dm3] 3R_18217611_SNP [dm6]	T	A	1.277e^-4	0.821	DOWNSTREAM CG7183 INTRON CG14314	TF binding site mE1_TFBS_cad
3R	25917231	3R_25917231_SNP [dm3] 3R_30091509_SNP [dm6]	C	T	1.278e^-4	0.821	INTRON sima	TF binding site mE1_TFBS_Trl
3R	7115294	3R_7115294_SNP [dm3] 3R_11289572_SNP [dm6]	T	C	1.278e^-4	0.821	INTRON CR31386
3R	9252078	3R_9252078_SNP [dm3] 3R_13426356_SNP [dm6]	T	G	1.283e^-4	0.821	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
X	10798930	X_10798930_SNP [dm3] X_10904897_SNP [dm6]	G	A	1.287e^-4	0.821	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11232146	3L_11232146_SNP [dm3] 3L_11239046_SNP [dm6]	T	A	1.287e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2481107	2L_2481107_SNP [dm3] 2L_2481107_SNP [dm6]	T	C	1.302e^-4	0.824	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	7991601	X_7991601_SNP [dm3] X_8097568_SNP [dm6]	A	T	1.303e^-4	0.824	INTRON CG2258
3R	21109865	3R_21109865_SNP [dm3] 3R_25284143_SNP [dm6]	A	G	1.304e^-4	0.824	SYNONYMOUS_CODING CG31300 DOWNSTREAM CG11892	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14115789	3L_14115789_SNP [dm3] 3L_14122689_SNP [dm6]	T	C	1.316e^-4	0.825	INTRON Sox21b
3R	19126708	3R_19126708_SNP [dm3] 3R_23300986_SNP [dm6]	A	G	1.330e^-4	0.825	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5107773	X_5107773_SNP [dm3] X_5213740_SNP [dm6]	T	A	1.333e^-4	0.825	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9252077	3R_9252077_SNP [dm3] 3R_13426355_SNP [dm6]	T	C	1.342e^-4	0.825	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
X	15646218	X_15646218_INS [dm3] X_15752185_INS [dm6]	A	ACGA	1.346e^-4	0.825	UTR_3_PRIME Graf DOWNSTREAM CG8239
3L	12290595	3L_12290595_SNP [dm3] 3L_12297495_SNP [dm6]	A	C	1.348e^-4	0.825	INTERGENIC
3R	12625769	3R_12625769_SNP [dm3] 3R_16800047_SNP [dm6]	T	A	1.351e^-4	0.825	UPSTREAM CR45750 INTERGENIC
2L	13969942	2L_13969942_SNP [dm3] 2L_13969942_SNP [dm6]	C	T	1.359e^-4	0.825	UTR_5_PRIME NimB4 UPSTREAM NimB5
2L	12746788	2L_12746788_INS [dm3] 2L_12746788_INS [dm6]	T	TTACGTAACAATAGTATATT...	1.365e^-4	0.825	INTERGENIC
2L	12657192	2L_12657192_SNP [dm3] 2L_12657192_SNP [dm6]	G	T	1.366e^-4	0.825	UTR_5_PRIME pdm2 UPSTREAM pdm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15895960	3R_15895960_SNP [dm3] 3R_20070238_SNP [dm6]	C	T	1.376e^-4	0.825	INTERGENIC
2L	2708083	2L_2708083_SNP [dm3] 2L_2708083_SNP [dm6]	T	C	1.376e^-4	0.825	INTRON CG31690
3L	17052651	3L_17052651_SNP [dm3] 3L_17059551_SNP [dm6]	A	C	1.381e^-4	0.825	UTR_3_PRIME Rbp6
3R	25244599	3R_25244599_INS [dm3] 3R_29418877_INS [dm6]	C	CGCAC	1.383e^-4	0.825	INTRON Ptp99A
3R	7115147	3R_7115147_SNP [dm3] 3R_11289425_SNP [dm6]	T	G	1.385e^-4	0.825	INTRON CR31386
3L	11926980	3L_11926980_SNP [dm3] 3L_11933880_SNP [dm6]	A	C	1.394e^-4	0.825	SYNONYMOUS_CODING byn INTRON CG44837
2L	2708526	2L_2708526_SNP [dm3] 2L_2708526_SNP [dm6]	A	C	1.399e^-4	0.825	INTRON CG31690
2L	3030430	2L_3030430_SNP [dm3] 2L_3030430_SNP [dm6]	A	T	1.402e^-4	0.825	UTR_3_PRIME CG17219 UPSTREAM GABPI EXON CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	5074603	2L_5074603_SNP [dm3] 2L_5074603_SNP [dm6]	G	A	1.405e^-4	0.825	INTRON pgant5	TF binding site mE1_TFBS_HSA
2R	10342782	2R_10342782_SNP [dm3] 2R_14455277_SNP [dm6]	A	G	1.405e^-4	0.825	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9660675	3L_9660675_SNP [dm3] 3L_9667575_SNP [dm6]	C	T	1.410e^-4	0.825	INTRON fry
X	20466757	X_20466757_SNP [dm3] X_20595730_SNP [dm6]	G	A	1.412e^-4	0.825	INTRON RunxA
2L	13689224	2L_13689224_SNP [dm3] 2L_13689224_SNP [dm6]	A	T	1.415e^-4	0.825	INTRON CG31814	TF binding site mE1_TFBS_cad
2L	8949178	2L_8949178_SNP [dm3] 2L_8949178_SNP [dm6]	C	A	1.420e^-4	0.825	INTRON C1GalTA	TF binding site BDTNP1_TFBS_dl
2L	3012592	2L_3012592_SNP [dm3] 2L_3012592_SNP [dm6]	T	C	1.420e^-4	0.825	INTRON CG17265	TF binding site mE1_TFBS_inv
X	8772677	X_8772677_SNP [dm3] X_8878644_SNP [dm6]	A	C	1.431e^-4	0.825	UTR_5_PRIME Moe INTRON Moe
3R	27177581	3R_27177581_SNP [dm3] 3R_31351859_SNP [dm6]	A	T	1.434e^-4	0.825	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18219167	3L_18219167_SNP [dm3] 3L_18226067_SNP [dm6]	T	A	1.446e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	2924663	X_2924663_SNP [dm3] X_3030630_SNP [dm6]	G	C	1.447e^-4	0.825	INTRON kirre
2L	3012563	2L_3012563_SNP [dm3] 2L_3012563_SNP [dm6]	G	T	1.448e^-4	0.825	INTRON CG17265	TF binding site mE1_TFBS_inv
2L	4030132	2L_4030132_SNP [dm3] 2L_4030132_SNP [dm6]	G	C	1.449e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20232765	3R_20232765_SNP [dm3] 3R_24407043_SNP [dm6]	G	A	1.452e^-4	0.825	INTRON nAChRalpha1
2L	5796152	2L_5796152_SNP [dm3] 2L_5796152_SNP [dm6]	T	A	1.452e^-4	0.825	INTRON CG9171
2L	12804147	2L_12804147_SNP [dm3] 2L_12804147_SNP [dm6]	C	T	1.460e^-4	0.825	INTERGENIC
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.464e^-4	0.825	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12951173	X_12951173_SNP [dm3] X_13057140_SNP [dm6]	A	T	1.464e^-4	0.825	INTRON rad
2L	2481090	2L_2481090_SNP [dm3] 2L_2481090_SNP [dm6]	G	C	1.490e^-4	0.826	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	19148893	3R_19148893_DEL [dm3] 3R_23323171_DEL [dm6]	AGCAATAACA	A	1.513e^-4	0.826	INTRON pnt
2L	2761329	2L_2761329_DEL [dm3] 2L_2761329_DEL [dm6]	AA	A	1.514e^-4	0.826	INTRON Trn-SR	TF binding site mE1_TFBS_cad
3L	11017214	3L_11017214_SNP [dm3] 3L_11024114_SNP [dm6]	A	G	1.518e^-4	0.826	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19340597	2R_19340597_SNP [dm3] 2R_23453074_SNP [dm6]	C	T	1.521e^-4	0.826	INTRON CG43795
3R	16131158	3R_16131158_SNP [dm3] 3R_20305436_SNP [dm6]	A	G	1.524e^-4	0.826	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3L	10709755	3L_10709755_SNP [dm3] 3L_10716655_SNP [dm6]	C	T	1.529e^-4	0.826	INTERGENIC
X	12652739	X_12652739_SNP [dm3] X_12758706_SNP [dm6]	G	A	1.531e^-4	0.826	SYNONYMOUS_CODING ade5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9736971	2R_9736971_SNP [dm3] 2R_13849466_SNP [dm6]	G	A	1.531e^-4	0.826	UPSTREAM CG30485 INTRON CG30484
2L	10856778	2L_10856778_SNP [dm3] 2L_10856778_SNP [dm6]	A	T	1.533e^-4	0.826	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC
3R	20274106	3R_20274106_INS [dm3] 3R_24448384_INS [dm6]	T	TAAATATATATATAT...	1.534e^-4	0.826	INTRON nAChRalpha1
3L	5989036	3L_5989036_SNP [dm3] 3L_5995936_SNP [dm6]	T	A	1.535e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13464214	3L_13464214_SNP [dm3] 3L_13471114_SNP [dm6]	T	G	1.535e^-4	0.826	INTRON CG10089	TF binding site mE1_TFBS_cad
2R	20105522	2R_20105522_SNP [dm3] 2R_24217999_SNP [dm6]	C	T	1.535e^-4	0.826	INTRON CG30419
3R	22900901	3R_22900901_SNP [dm3] 3R_27075179_SNP [dm6]	G	A	1.543e^-4	0.826	UPSTREAM CG14257 INTERGENIC
X	12652902	X_12652902_SNP [dm3] X_12758869_SNP [dm6]	G	A	1.545e^-4	0.826	INTRON ade5	TF binding site mE1_TFBS_cad
3R	6517258	3R_6517258_SNP [dm3] 3R_10691536_SNP [dm6]	A	C	1.545e^-4	0.826	DOWNSTREAM Skeletor INTRON Skeletor	TF binding site mE1_TFBS_cad
3L	11058623	3L_11058623_SNP [dm3] 3L_11065523_SNP [dm6]	G	T	1.545e^-4	0.826	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101 UPSTREAM CG32075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	10634335	2L_10634335_SNP [dm3] 2L_10634335_SNP [dm6]	C	T	1.582e^-4	0.836	INTRON CG7329
2R	6634867	2R_6634867_SNP [dm3] 2R_10747362_SNP [dm6]	C	T	1.586e^-4	0.836	INTRON CG33144
3L	11999540	3L_11999540_SNP [dm3] 3L_12006440_SNP [dm6]	C	A	1.586e^-4	0.836	INTRON CG6928
2R	14470617	2R_14470617_SNP [dm3] 2R_18583112_SNP [dm6]	A	G	1.592e^-4	0.836	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10856727	2L_10856727_DEL [dm3] 2L_10856727_DEL [dm6]	TAAGT	T	1.593e^-4	0.836	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC
2L	12403784	2L_12403784_SNP [dm3] 2L_12403784_SNP [dm6]	A	T	1.595e^-4	0.836	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
3L	12290611	3L_12290611_SNP [dm3] 3L_12297511_SNP [dm6]	A	G	1.600e^-4	0.836	INTERGENIC
X	14585643	X_14585643_SNP [dm3] X_14691610_SNP [dm6]	A	T	1.601e^-4	0.836	INTRON NetB
2L	3012112	2L_3012112_SNP [dm3] 2L_3012112_SNP [dm6]	T	C	1.604e^-4	0.836	INTRON CG17265	TF binding site mE1_TFBS_inv
3R	24954085	3R_24954085_SNP [dm3] 3R_29128363_SNP [dm6]	C	A	1.617e^-4	0.84	DOWNSTREAM dgt6 & 1 other INTERGENIC
3R	16131138	3R_16131138_SNP [dm3] 3R_20305416_SNP [dm6]	A	C	1.629e^-4	0.842	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	18317088	2L_18317088_SNP [dm3] 2L_18317088_SNP [dm6]	C	T	1.646e^-4	0.842	INTERGENIC
2R	13182829	2R_13182829_SNP [dm3] 2R_17295324_SNP [dm6]	C	T	1.649e^-4	0.842	INTRON mbl
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	1.655e^-4	0.842	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3L	11070540	3L_11070540_SNP [dm3] 3L_11077440_SNP [dm6]	A	G	1.662e^-4	0.842	INTRON CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8373390	2L_8373390_SNP [dm3] 2L_8373390_SNP [dm6]	G	A	1.663e^-4	0.842	INTRON CG17292	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	23563853	3R_23563853_SNP [dm3] 3R_27738131_SNP [dm6]	T	A	1.677e^-4	0.842	INTRON Ets98B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2678546	2L_2678546_SNP [dm3] 2L_2678546_SNP [dm6]	C	T	1.678e^-4	0.842	INTRON CG31690
2R	19041904	2R_19041904_SNP [dm3] 2R_23154381_SNP [dm6]	T	G	1.684e^-4	0.842	INTRON CG9899
3R	16131161	3R_16131161_SNP [dm3] 3R_20305439_SNP [dm6]	G	T	1.689e^-4	0.842	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2R	16122793	2R_16122793_INS [dm3] 2R_20235288_INS [dm6]	A	AA	1.702e^-4	0.842	UTR_3_PRIME CG44624 UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044
3R	16131147	3R_16131147_MNP [dm3] 3R_20305425_MNP [dm6]	CGGT	AATG	1.707e^-4	0.842	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3R	19025396	3R_19025396_SNP [dm3] 3R_23199674_SNP [dm6]	G	T	1.709e^-4	0.842	INTRON cnc
3L	968146	3L_968146_SNP [dm3] 3L_968146_SNP [dm6]	T	G	1.715e^-4	0.842	INTRON Glut1
2L	10996253	2L_10996253_SNP [dm3] 2L_10996253_SNP [dm6]	C	G	1.723e^-4	0.842	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.725e^-4	0.842	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	18436734	3R_18436734_SNP [dm3] 3R_22611012_SNP [dm6]	G	A	1.726e^-4	0.842	SPLICE_SITE_REGION CG31156 SYNONYMOUS_CODING CG31156 DOWNSTREAM CG13843
3R	26413861	3R_26413861_SNP [dm3] 3R_30588139_SNP [dm6]	T	A	1.727e^-4	0.842	UPSTREAM CG9717 INTERGENIC
3R	7115332	3R_7115332_SNP [dm3] 3R_11289610_SNP [dm6]	A	C	1.733e^-4	0.842	INTRON CR31386
3R	15290312	3R_15290312_SNP [dm3] 3R_19464590_SNP [dm6]	A	G	1.738e^-4	0.842	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	8351796	X_8351796_SNP [dm3] X_8457763_SNP [dm6]	A	T	1.751e^-4	0.842	UPSTREAM CG32713 DOWNSTREAM CG15347 INTERGENIC
2L	3017922	2L_3017922_SNP [dm3] 2L_3017922_SNP [dm6]	A	T	1.763e^-4	0.842	UPSTREAM CG17264 INTRON CG17224	TF binding site BDTNP1_TFBS_twi
2L	2701668	2L_2701668_SNP [dm3] 2L_2701668_SNP [dm6]	C	T	1.766e^-4	0.842	INTRON CG31690	TF binding site mE1_TFBS_chinmo
3R	25852160	3R_25852160_SNP [dm3] 3R_30026438_SNP [dm6]	A	C	1.770e^-4	0.842	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_chinmo
3L	11070546	3L_11070546_SNP [dm3] 3L_11077446_SNP [dm6]	C	A	1.775e^-4	0.842	INTRON CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2481121	2L_2481121_SNP [dm3] 2L_2481121_SNP [dm6]	A	T	1.787e^-4	0.842	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	16583236	2L_16583236_SNP [dm3] 2L_16583236_SNP [dm6]	T	C	1.788e^-4	0.842	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10634339	2L_10634339_SNP [dm3] 2L_10634339_SNP [dm6]	A	G	1.796e^-4	0.842	INTRON CG7329
3L	13481638	3L_13481638_SNP [dm3] 3L_13488538_SNP [dm6]	G	T	1.800e^-4	0.842	INTRON Tgi	TF binding site BDTNP1_TFBS_twi
3L	4758516	3L_4758516_SNP [dm3] 3L_4758516_SNP [dm6]	A	G	1.801e^-4	0.842	UTR_3_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11069656	3L_11069656_SNP [dm3] 3L_11076556_SNP [dm6]	G	A	1.807e^-4	0.842	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad
2R	8353569	2R_8353569_SNP [dm3] 2R_12466064_SNP [dm6]	G	C	1.809e^-4	0.842	DOWNSTREAM Lac INTRON dgt5	TF binding site mE1_TFBS_cad
3L	9699763	3L_9699763_SNP [dm3] 3L_9706663_SNP [dm6]	A	G	1.812e^-4	0.842	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11178049	3L_11178049_SNP [dm3] 3L_11184949_SNP [dm6]	T	C	1.817e^-4	0.842	INTRON GlcAT-P
3R	12600810	3R_12600810_SNP [dm3] 3R_16775088_SNP [dm6]	G	C	1.817e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11297760	3L_11297760_DEL [dm3] 3L_11304660_DEL [dm6]	CTTTTCACCGATTTTCCCGC...	C	1.818e^-4	0.842	INTERGENIC
3L	12023299	3L_12023299_SNP [dm3] 3L_12030199_SNP [dm6]	C	G	1.818e^-4	0.842	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12623525	3R_12623525_SNP [dm3] 3R_16797803_SNP [dm6]	A	T	1.821e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3030347	2L_3030347_SNP [dm3] 2L_3030347_SNP [dm6]	G	A	1.826e^-4	0.842	SYNONYMOUS_CODING CG17219 UPSTREAM GABPI DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	10856718	2L_10856718_SNP [dm3] 2L_10856718_SNP [dm6]	T	A	1.831e^-4	0.842	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC
2L	2541886	2L_2541886_SNP [dm3] 2L_2541886_SNP [dm6]	G	A	1.834e^-4	0.842	INTERGENIC
2L	2481115	2L_2481115_SNP [dm3] 2L_2481115_SNP [dm6]	T	A	1.835e^-4	0.842	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	2481091	2L_2481091_SNP [dm3] 2L_2481091_SNP [dm6]	A	T	1.836e^-4	0.842	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	16673738	3R_16673738_SNP [dm3] 3R_20848016_SNP [dm6]	C	A	1.837e^-4	0.842	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1263358	3L_1263358_DEL [dm3] 3L_1263358_DEL [dm6]	CAT	C	1.838e^-4	0.842	INTRON CG9134
X	4236934	X_4236934_SNP [dm3] X_4342901_SNP [dm6]	T	G	1.839e^-4	0.842	INTRON norpA
2R	9530242	2R_9530242_SNP [dm3] 2R_13642737_SNP [dm6]	G	C	1.841e^-4	0.842	INTRON fas
X	3915315	X_3915315_SNP [dm3] X_4021282_SNP [dm6]	T	C	1.843e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12214344	2R_12214344_SNP [dm3] 2R_16326839_SNP [dm6]	G	A	1.848e^-4	0.842	SYNONYMOUS_CODING Vha44
3L	12812755	3L_12812755_SNP [dm3] 3L_12819655_SNP [dm6]	G	C	1.851e^-4	0.842	NON_SYNONYMOUS_CODING CG42588
3R	22742782	3R_22742782_SNP [dm3] 3R_26917060_SNP [dm6]	G	A	1.854e^-4	0.842	INTRON sda
2L	12925868	2L_12925868_SNP [dm3] 2L_12925868_SNP [dm6]	T	C	1.856e^-4	0.842	SYNONYMOUS_CODING ACXE DOWNSTREAM ACXA
2R	9736922	2R_9736922_SNP [dm3] 2R_13849417_SNP [dm6]	G	C	1.860e^-4	0.842	NON_SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
2L	12613406	2L_12613406_SNP [dm3] 2L_12613406_SNP [dm6]	T	A	1.868e^-4	0.842	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	18785441	3L_18785441_SNP [dm3] 3L_18792341_SNP [dm6]	T	A	1.876e^-4	0.842	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
X	20245016	X_20245016_INS [dm3] X_20373989_INS [dm6]	C	CAAT	1.887e^-4	0.842	INTERGENIC
X	18285011	X_18285011_SNP [dm3] X_18390978_SNP [dm6]	C	T	1.890e^-4	0.842	DOWNSTREAM Tsf1 INTRON CG32549	TF binding site mE1_TFBS_chinmo
3R	25921051	3R_25921051_SNP [dm3] 3R_30095329_SNP [dm6]	A	C	1.896e^-4	0.842	INTRON sima
3R	26138375	3R_26138375_SNP [dm3] 3R_30312653_SNP [dm6]	G	A	1.897e^-4	0.842	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	1.904e^-4	0.842	INTERGENIC
2L	8442799	2L_8442799_SNP [dm3] 2L_8442799_SNP [dm6]	T	A	1.908e^-4	0.842	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
2L	8787881	2L_8787881_SNP [dm3] 2L_8787881_SNP [dm6]	A	G	1.909e^-4	0.842	INTERGENIC
3R	15290158	3R_15290158_DEL [dm3] 3R_19464436_DEL [dm6]	AATA	A	1.923e^-4	0.842	INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19208214	3R_19208214_SNP [dm3] 3R_23382492_SNP [dm6]	T	G	1.925e^-4	0.842	SYNONYMOUS_CODING CG4393
2L	3030986	2L_3030986_SNP [dm3] 2L_3030986_SNP [dm6]	T	G	1.929e^-4	0.842	START_GAINED GABPI UTR_5_PRIME GABPI UPSTREAM CR44147 DOWNSTREAM CG17219 INTRON GABPI	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16131154	3R_16131154_INS [dm3] 3R_20305432_INS [dm6]	T	TTATTTTAAA	1.931e^-4	0.842	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3R	26137020	3R_26137020_SNP [dm3] 3R_30311298_SNP [dm6]	C	T	1.936e^-4	0.842	INTRON hdc
3R	11802001	3R_11802001_INS [dm3] 3R_15976279_INS [dm6]	G	GGG	1.939e^-4	0.842	UPSTREAM Hel89B INTRON Hel89B
2L	17201399	2L_17201399_SNP [dm3] 2L_17201399_SNP [dm6]	A	G	1.940e^-4	0.842	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17915984	3R_17915984_SNP [dm3] 3R_22090262_SNP [dm6]	A	G	1.948e^-4	0.842	INTRON CG5778
3L	11009763	3L_11009763_SNP [dm3] 3L_11016663_SNP [dm6]	G	A	1.950e^-4	0.842	INTERGENIC
3L	12812758	3L_12812758_SNP [dm3] 3L_12819658_SNP [dm6]	C	T	1.963e^-4	0.842	NON_SYNONYMOUS_CODING CG42588
2L	9008712	2L_9008712_SNP [dm3] 2L_9008712_SNP [dm6]	T	C	1.964e^-4	0.842	INTERGENIC
X	12951204	X_12951204_SNP [dm3] X_13057171_SNP [dm6]	T	C	1.969e^-4	0.842	INTRON rad
2R	11857008	2R_11857008_SNP [dm3] 2R_15969503_SNP [dm6]	T	G	1.970e^-4	0.842	SYNONYMOUS_CODING Strn-Mlck
3R	9296153	3R_9296153_SNP [dm3] 3R_13470431_SNP [dm6]	A	G	1.974e^-4	0.842	INTERGENIC
3R	12625756	3R_12625756_SNP [dm3] 3R_16800034_SNP [dm6]	C	A	1.976e^-4	0.842	UPSTREAM CR45750 INTERGENIC
2L	9011813	2L_9011813_SNP [dm3] 2L_9011813_SNP [dm6]	A	G	1.978e^-4	0.842	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	8384985	2L_8384985_SNP [dm3] 2L_8384985_SNP [dm6]	T	A	1.978e^-4	0.842	UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12333156	2R_12333156_DEL [dm3] 2R_16445651_DEL [dm6]	TTG	C	1.979e^-4	0.842	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
3R	19130983	3R_19130983_SNP [dm3] 3R_23305261_SNP [dm6]	T	G	1.998e^-4	0.848	INTRON pnt
2R	9343765	2R_9343765_SNP [dm3] 2R_13456260_SNP [dm6]	T	G	2.005e^-4	0.849	SPLICE_SITE_REGION arr INTRON arr
2L	9011746	2L_9011746_SNP [dm3] 2L_9011746_SNP [dm6]	A	G	2.013e^-4	0.849	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	18069073	3L_18069073_SNP [dm3] 3L_18075973_SNP [dm6]	G	T	2.014e^-4	0.849	UPSTREAM CR45391 INTERGENIC
2R	16122803	2R_16122803_INS [dm3] 2R_20235298_INS [dm6]	A	ATCAATCAATCAATCAA...	2.019e^-4	0.849	UTR_3_PRIME CG44624 UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044
3L	10737781	3L_10737781_SNP [dm3] 3L_10744681_SNP [dm6]	A	G	2.025e^-4	0.849	INTERGENIC
2L	13689223	2L_13689223_SNP [dm3] 2L_13689223_SNP [dm6]	A	T	2.031e^-4	0.849	INTRON CG31814	TF binding site mE1_TFBS_cad
2L	2481144	2L_2481144_SNP [dm3] 2L_2481144_SNP [dm6]	G	A	2.033e^-4	0.849	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	6470202	X_6470202_INS [dm3] X_6576169_INS [dm6]	T	TTCTTCGAAAAT...	2.046e^-4	0.85	INTRON CG34417
X	12715151	X_12715151_SNP [dm3] X_12821118_SNP [dm6]	C	T	2.054e^-4	0.85	INTRON Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18405577	3R_18405577_SNP [dm3] 3R_22579855_SNP [dm6]	C	T	2.058e^-4	0.85	UTR_3_PRIME CG33110 UPSTREAM CSN6
3L	4315701	3L_4315701_SNP [dm3] 3L_4315701_SNP [dm6]	A	C	2.066e^-4	0.85	NON_SYNONYMOUS_CODING Claspin
X	13594838	X_13594838_SNP [dm3] X_13700805_SNP [dm6]	G	C	2.072e^-4	0.85	INTRON CG9940 & 1 other
3L	6777197	3L_6777197_SNP [dm3] 3L_6784097_SNP [dm6]	A	C	2.072e^-4	0.85	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3L	15825281	3L_15825281_SNP [dm3] 3L_15832181_SNP [dm6]	T	A	2.077e^-4	0.85	UPSTREAM CG12713 DOWNSTREAM dbo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	16606123	2L_16606123_SNP [dm3] 2L_16606123_SNP [dm6]	C	G	2.087e^-4	0.85	NON_SYNONYMOUS_CODING CG31815 INTRON CG42389
X	8351801	X_8351801_SNP [dm3] X_8457768_SNP [dm6]	A	T	2.089e^-4	0.85	UPSTREAM CG32713 DOWNSTREAM CG15347 INTERGENIC
2L	12195339	2L_12195339_SNP [dm3] 2L_12195339_SNP [dm6]	C	A	2.090e^-4	0.85	INTRON aret
2L	5796145	2L_5796145_SNP [dm3] 2L_5796145_SNP [dm6]	G	C	2.090e^-4	0.85	INTRON CG9171
3R	18241097	3R_18241097_SNP [dm3] 3R_22415375_SNP [dm6]	C	G	2.096e^-4	0.85	SYNONYMOUS_CODING lqfR INTRON lqfR
2L	13492606	2L_13492606_SNP [dm3] 2L_13492606_SNP [dm6]	A	G	2.099e^-4	0.85	INTRON CG42784
X	5403514	X_5403514_SNP [dm3] X_5509481_SNP [dm6]	C	T	2.104e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8949226	2L_8949226_SNP [dm3] 2L_8949226_SNP [dm6]	G	C	2.115e^-4	0.85	INTRON C1GalTA	TF binding site BDTNP1_TFBS_dl
3R	19177404	3R_19177404_SNP [dm3] 3R_23351682_SNP [dm6]	G	A	2.118e^-4	0.85	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	2.123e^-4	0.85	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3R	25852161	3R_25852161_SNP [dm3] 3R_30026439_SNP [dm6]	G	T	2.126e^-4	0.85	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_chinmo
3R	19578352	3R_19578352_SNP [dm3] 3R_23752630_SNP [dm6]	C	T	2.130e^-4	0.85	UPSTREAM Rpt5 INTRON RanBP3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3R	16675054	3R_16675054_SNP [dm3] 3R_20849332_SNP [dm6]	T	G	2.131e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9008716	2L_9008716_SNP [dm3] 2L_9008716_SNP [dm6]	G	A	2.132e^-4	0.85	INTERGENIC
2L	3901343	2L_3901343_SNP [dm3] 2L_3901343_SNP [dm6]	C	T	2.151e^-4	0.85	INTRON capu
2L	8385091	2L_8385091_SNP [dm3] 2L_8385091_SNP [dm6]	A	T	2.152e^-4	0.85	START_GAINED CG13384 UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 INTRON CG13384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7933504	3R_7933504_SNP [dm3] 3R_12107782_SNP [dm6]	T	G	2.155e^-4	0.85	SYNONYMOUS_CODING dpr17	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10216987	2L_10216987_SNP [dm3] 2L_10216987_SNP [dm6]	C	T	2.160e^-4	0.85	SYNONYMOUS_CODING Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25919558	3R_25919558_INS [dm3] 3R_30093836_INS [dm6]	T	TT	2.161e^-4	0.85	INTRON sima
2R	17275256	2R_17275256_SNP [dm3] 2R_21387751_SNP [dm6]	C	G	2.161e^-4	0.85	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
3R	19977940	3R_19977940_SNP [dm3] 3R_24152218_SNP [dm6]	A	T	2.179e^-4	0.85	UPSTREAM CG6178 & 1 other INTRON p38a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18419241	2L_18419241_SNP [dm3] 2L_18419241_SNP [dm6]	T	C	2.181e^-4	0.85	INTERGENIC
2L	10856693	2L_10856693_SNP [dm3] 2L_10856693_SNP [dm6]	T	G	2.182e^-4	0.85	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC	TF binding site mE1_TFBS_cad
2L	16583254	2L_16583254_SNP [dm3] 2L_16583254_SNP [dm6]	A	T	2.189e^-4	0.85	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	4830027	3L_4830027_SNP [dm3] 3L_4830027_SNP [dm6]	C	T	2.192e^-4	0.85	NON_SYNONYMOUS_CODING CG13708 DOWNSTREAM Aats-leu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3501674	2L_3501674_SNP [dm3] 2L_3501674_SNP [dm6]	G	A	2.207e^-4	0.85	SYNONYMOUS_CODING tim
X	13339130	X_13339130_INS [dm3] X_13445097_INS [dm6]	T	TGCGCAGTGT	2.209e^-4	0.85	UPSTREAM Neto INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2761388	2L_2761388_SNP [dm3] 2L_2761388_SNP [dm6]	G	A	2.216e^-4	0.85	INTRON Trn-SR	TF binding site mE1_TFBS_cad
2R	2944538	2R_2944538_SNP [dm3] 2R_7057033_SNP [dm6]	G	A	2.227e^-4	0.85	SYNONYMOUS_CODING Tsp42Ep DOWNSTREAM Tsp42Eo & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11867875	3L_11867875_SNP [dm3] 3L_11874775_SNP [dm6]	A	C	2.228e^-4	0.85	INTRON CG44837
X	5351414	X_5351414_INS [dm3] X_5457381_INS [dm6]	C	CAATTTGCTAACGAAATATT...	2.233e^-4	0.85	INTRON SPR
3R	16131152	3R_16131152_SNP [dm3] 3R_20305430_SNP [dm6]	C	A	2.237e^-4	0.85	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3R	17148742	3R_17148742_SNP [dm3] 3R_21323020_SNP [dm6]	G	A	2.238e^-4	0.85	INTRON CG16791
2L	1975583	2L_1975583_SNP [dm3] 2L_1975583_SNP [dm6]	G	A	2.239e^-4	0.85	UTR_3_PRIME CG15356 DOWNSTREAM Der-1
3R	6602101	3R_6602101_SNP [dm3] 3R_10776379_SNP [dm6]	G	A	2.246e^-4	0.85	INTRON CG45076 & 2 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16708920	2R_16708920_SNP [dm3] 2R_20821415_SNP [dm6]	C	T	2.246e^-4	0.85	UTR_3_PRIME insc
3R	19148572	3R_19148572_SNP [dm3] 3R_23322850_SNP [dm6]	T	C	2.250e^-4	0.85	INTRON pnt
3L	8838497	3L_8838497_SNP [dm3] 3L_8845397_SNP [dm6]	G	A	2.258e^-4	0.85	INTRON dally
X	9974630	X_9974630_SNP [dm3] X_10080597_SNP [dm6]	A	G	2.264e^-4	0.85	SYNONYMOUS_CODING ZAP3
3R	16131172	3R_16131172_INS [dm3] 3R_20305450_INS [dm6]	A	ATTGAA	2.266e^-4	0.85	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2R	5311801	2R_5311801_SNP [dm3] 2R_9424296_SNP [dm6]	G	C	2.269e^-4	0.85	UPSTREAM CG13955 INTRON prel	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21480422	3R_21480422_SNP [dm3] 3R_25654700_SNP [dm6]	G	A	2.273e^-4	0.85	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_chinmo
X	7324134	X_7324134_SNP [dm3] X_7430101_SNP [dm6]	A	G	2.273e^-4	0.85	INTERGENIC
3R	12605425	3R_12605425_SNP [dm3] 3R_16779703_SNP [dm6]	C	T	2.274e^-4	0.85	INTERGENIC
2L	3419728	2L_3419728_SNP [dm3] 2L_3419728_SNP [dm6]	G	T	2.282e^-4	0.85	INTRON pgant2
3L	10971869	3L_10971869_INS [dm3] 3L_10978769_INS [dm6]	G	GG	2.284e^-4	0.85	UPSTREAM CR45745 INTERGENIC
3R	25922976	3R_25922976_SNP [dm3] 3R_30097254_SNP [dm6]	A	T	2.285e^-4	0.85	INTRON sima	TF binding site mE1_TFBS_cnc
3R	12627911	3R_12627911_SNP [dm3] 3R_16802189_SNP [dm6]	G	A	2.293e^-4	0.85	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14752023	X_14752023_SNP [dm3] X_14857990_SNP [dm6]	T	C	2.293e^-4	0.85	INTRON Flo2
3R	23669668	3R_23669668_INS [dm3] 3R_27843946_INS [dm6]	T	TTT	2.294e^-4	0.85	INTRON CG34353
3R	9239822	3R_9239822_MNP [dm3] 3R_13414100_MNP [dm6]	ATTG	GCGC	2.303e^-4	0.85	INTRON yellow-e
3R	5291857	3R_5291857_SNP [dm3] 3R_9466135_SNP [dm6]	C	G	2.311e^-4	0.85	UTR_3_PRIME CG16779
X	5677353	X_5677353_SNP [dm3] X_5783320_SNP [dm6]	C	T	2.314e^-4	0.85	INTRON CG42699
2R	5250779	2R_5250779_SNP [dm3] 2R_9363274_SNP [dm6]	T	G	2.318e^-4	0.85	UPSTREAM CG12158 INTRON CG13954
2R	11857007	2R_11857007_SNP [dm3] 2R_15969502_SNP [dm6]	A	G	2.319e^-4	0.85	NON_SYNONYMOUS_CODING Strn-Mlck
3R	13020256	3R_13020256_SNP [dm3] 3R_17194534_SNP [dm6]	G	C	2.324e^-4	0.85	INTRON Mur89F
3R	7983984	3R_7983984_SNP [dm3] 3R_12158262_SNP [dm6]	C	T	2.326e^-4	0.85	INTRON dpr15
2L	10856747	2L_10856747_INS [dm3] 2L_10856747_INS [dm6]	T	TCT	2.340e^-4	0.851	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	2.344e^-4	0.851	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3R	24953517	3R_24953517_SNP [dm3] 3R_29127795_SNP [dm6]	G	A	2.344e^-4	0.851	SYNONYMOUS_CODING CG11880 DOWNSTREAM dgt6	TF binding site mE1_TFBS_cad
X	19890702	X_19890702_SNP [dm3] X_19996669_SNP [dm6]	C	G	2.346e^-4	0.851	INTERGENIC
3R	22738732	3R_22738732_INS [dm3] 3R_26913010_INS [dm6]	T	TGG	2.352e^-4	0.852	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	13587604	2L_13587604_SNP [dm3] 2L_13587604_SNP [dm6]	C	T	2.365e^-4	0.854	INTRON kuz
3R	16131111	3R_16131111_DEL [dm3] 3R_20305389_DEL [dm6]	AC	A	2.368e^-4	0.854	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
3L	10715851	3L_10715851_SNP [dm3] 3L_10722751_SNP [dm6]	C	T	2.382e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_Trl
X	15337955	X_15337955_SNP [dm3] X_15443922_SNP [dm6]	T	A	2.388e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19126712	3R_19126712_SNP [dm3] 3R_23300990_SNP [dm6]	A	C	2.390e^-4	0.855	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14459167	2L_14459167_SNP [dm3] 2L_14459167_SNP [dm6]	T	C	2.392e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	846363	2L_846363_SNP [dm3] 2L_846363_SNP [dm6]	C	G	2.396e^-4	0.855	INTRON drongo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6672389	3L_6672389_SNP [dm3] 3L_6679289_SNP [dm6]	G	C	2.398e^-4	0.855	INTERGENIC
3R	14665573	3R_14665573_DEL [dm3] 3R_18839851_DEL [dm6]	ATCGGTA	A	2.412e^-4	0.859	INTRON CG18208
3L	10902499	3L_10902499_SNP [dm3] 3L_10909399_SNP [dm6]	T	C	2.418e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	650304	3L_650304_SNP [dm3] 3L_650304_SNP [dm6]	G	A	2.429e^-4	0.86	SYNONYMOUS_CODING Gale	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5107798	X_5107798_SNP [dm3] X_5213765_SNP [dm6]	A	C	2.435e^-4	0.86	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12656514	2L_12656514_SNP [dm3] 2L_12656514_SNP [dm6]	T	A	2.458e^-4	0.86	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5266561	2L_5266561_SNP [dm3] 2L_5266561_SNP [dm6]	T	C	2.468e^-4	0.86	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2L	10634389	2L_10634389_SNP [dm3] 2L_10634389_SNP [dm6]	G	T	2.472e^-4	0.86	INTRON CG7329
X	15160517	X_15160517_SNP [dm3] X_15266484_SNP [dm6]	C	T	2.473e^-4	0.86	INTERGENIC
3R	7247940	3R_7247940_SNP [dm3] 3R_11422218_SNP [dm6]	T	G	2.482e^-4	0.86	UTR_5_PRIME CG5270 UPSTREAM ninaG	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3841012	2R_3841012_SNP [dm3] 2R_7953507_SNP [dm6]	T	G	2.485e^-4	0.86	INTRON CG14764	TF binding site mE1_TFBS_inv
X	6866462	X_6866462_SNP [dm3] X_6972429_SNP [dm6]	A	C	2.488e^-4	0.86	UTR_3_PRIME CG3040 DOWNSTREAM CG4586
2L	11609181	2L_11609181_SNP [dm3] 2L_11609181_SNP [dm6]	C	T	2.493e^-4	0.86	INTRON kek2	TF binding site mE1_TFBS_inv
3L	2735091	3L_2735091_SNP [dm3] 3L_2735091_SNP [dm6]	C	A	2.494e^-4	0.86	UPSTREAM Mrtf INTRON Mrtf
3R	16131136	3R_16131136_SNP [dm3] 3R_20305414_SNP [dm6]	A	C	2.495e^-4	0.86	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	16601712	2L_16601712_SNP [dm3] 2L_16601712_SNP [dm6]	G	C	2.511e^-4	0.86	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12951240	X_12951240_SNP [dm3] X_13057207_SNP [dm6]	G	A	2.519e^-4	0.86	INTRON rad
3R	14544100	3R_14544100_DEL [dm3] 3R_18718378_DEL [dm6]	AAC	A	2.525e^-4	0.86	UTR_3_PRIME VAChT INTRON Cha
2L	4088472	2L_4088472_SNP [dm3] 2L_4088472_SNP [dm6]	G	C	2.526e^-4	0.86	INTRON ed
2L	2481127	2L_2481127_SNP [dm3] 2L_2481127_SNP [dm6]	G	A	2.532e^-4	0.86	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	8028094	2L_8028094_SNP [dm3] 2L_8028094_SNP [dm6]	A	G	2.549e^-4	0.86	SYNONYMOUS_CODING CG7367
2L	5151481	2L_5151481_INS [dm3] 2L_5151481_INS [dm6]	G	GG	2.556e^-4	0.86	UPSTREAM Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	13834707	2R_13834707_DEL [dm3] 2R_17947202_DEL [dm6]	GG	G	2.556e^-4	0.86	INTERGENIC
3R	9215501	3R_9215501_SNP [dm3] 3R_13389779_SNP [dm6]	A	T	2.557e^-4	0.86	INTRON CCHa2
3R	25990697	3R_25990697_INS [dm3] 3R_30164975_INS [dm6]	T	TT	2.558e^-4	0.86	UTR_3_PRIME CG31030	TF binding site mE1_TFBS_cad
2R	11943440	2R_11943440_INS [dm3] 2R_16055935_INS [dm6]	T	TGT	2.559e^-4	0.86	INTRON CG8405
2L	3181169	2L_3181169_SNP [dm3] 2L_3181169_SNP [dm6]	C	A	2.559e^-4	0.86	INTRON CG34393
3L	4618519	3L_4618519_SNP [dm3] 3L_4618519_SNP [dm6]	A	T	2.560e^-4	0.86	INTRON Src64B
3R	26395248	3R_26395248_SNP [dm3] 3R_30569526_SNP [dm6]	G	T	2.562e^-4	0.86	INTRON tmod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26395304	3R_26395304_SNP [dm3] 3R_30569582_SNP [dm6]	A	C	2.562e^-4	0.86	INTRON tmod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3964184	3R_3964184_SNP [dm3] 3R_8138462_SNP [dm6]	T	A	2.567e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11857022	2R_11857022_SNP [dm3] 2R_15969517_SNP [dm6]	G	A	2.579e^-4	0.86	NON_SYNONYMOUS_CODING Strn-Mlck
3R	25920015	3R_25920015_SNP [dm3] 3R_30094293_SNP [dm6]	T	G	2.584e^-4	0.86	INTRON sima	TF binding site mE1_TFBS_inv
2L	7054132	2L_7054132_SNP [dm3] 2L_7054132_SNP [dm6]	G	A	2.589e^-4	0.86	NON_SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18375174	3R_18375174_SNP [dm3] 3R_22549452_SNP [dm6]	C	G	2.598e^-4	0.86	DOWNSTREAM CR44062 INTERGENIC
2L	16606565	2L_16606565_SNP [dm3] 2L_16606565_SNP [dm6]	G	C	2.599e^-4	0.86	NON_SYNONYMOUS_CODING CG31815 UPSTREAM CG4631 INTRON CG42389
2L	1245740	2L_1245740_SNP [dm3] 2L_1245740_SNP [dm6]	G	A	2.601e^-4	0.86	INTERGENIC
3R	9215737	3R_9215737_SNP [dm3] 3R_13390015_SNP [dm6]	C	T	2.611e^-4	0.86	INTRON CCHa2
3R	22231874	3R_22231874_SNP [dm3] 3R_26406152_SNP [dm6]	T	G	2.621e^-4	0.86	INTERGENIC
3R	26260744	3R_26260744_SNP [dm3] 3R_30435022_SNP [dm6]	T	G	2.624e^-4	0.86	UTR_3_PRIME CG15534 DOWNSTREAM CG15537
2L	3838801	2L_3838801_SNP [dm3] 2L_3838801_SNP [dm6]	T	A	2.625e^-4	0.86	UTR_3_PRIME slp2
3L	13464247	3L_13464247_SNP [dm3] 3L_13471147_SNP [dm6]	T	C	2.628e^-4	0.86	INTRON CG10089	TF binding site mE1_TFBS_cad
3R	16675039	3R_16675039_SNP [dm3] 3R_20849317_SNP [dm6]	A	T	2.631e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12607073	3R_12607073_SNP [dm3] 3R_16781351_SNP [dm6]	C	T	2.633e^-4	0.86	INTERGENIC
3L	2359262	3L_2359262_SNP [dm3] 3L_2359262_SNP [dm6]	A	T	2.644e^-4	0.86	INTERGENIC
3R	8380743	3R_8380743_DEL [dm3] 3R_12555021_DEL [dm6]	TT	T	2.645e^-4	0.86	INTRON Octbeta2R
2R	15964416	2R_15964416_SNP [dm3] 2R_20076911_SNP [dm6]	T	C	2.646e^-4	0.86	INTERGENIC
X	8023354	X_8023354_SNP [dm3] X_8129321_SNP [dm6]	G	C	2.660e^-4	0.86	UPSTREAM CG2116 & 1 other INTRON cyr	TF binding site BDTNP1_TFBS_dl
3L	12462076	3L_12462076_SNP [dm3] 3L_12468976_SNP [dm6]	C	T	2.669e^-4	0.86	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	4124587	3L_4124587_SNP [dm3] 3L_4124587_SNP [dm6]	C	G	2.669e^-4	0.86	UTR_3_PRIME ens
3R	16672421	3R_16672421_DEL [dm3] 3R_20846699_DEL [dm6]	CCTCC	C	2.674e^-4	0.86	UPSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	979394	3L_979394_SNP [dm3] 3L_979394_SNP [dm6]	G	T	2.675e^-4	0.86	INTRON Glut1
2L	4611833	2L_4611833_SNP [dm3] 2L_4611833_SNP [dm6]	T	G	2.676e^-4	0.86	INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	12290634	3L_12290634_SNP [dm3] 3L_12297534_SNP [dm6]	G	T	2.683e^-4	0.86	INTERGENIC
3R	12607457	3R_12607457_SNP [dm3] 3R_16781735_SNP [dm6]	T	A	2.696e^-4	0.86	INTERGENIC
3R	12607463	3R_12607463_SNP [dm3] 3R_16781741_SNP [dm6]	T	A	2.696e^-4	0.86	INTERGENIC
3R	12607469	3R_12607469_SNP [dm3] 3R_16781747_SNP [dm6]	A	T	2.696e^-4	0.86	INTERGENIC
3R	12607472	3R_12607472_SNP [dm3] 3R_16781750_SNP [dm6]	A	T	2.696e^-4	0.86	INTERGENIC
3R	12607477	3R_12607477_INS [dm3] 3R_16781755_INS [dm6]	A	AACTACTGAGA...	2.696e^-4	0.86	INTERGENIC
3R	12607479	3R_12607479_SNP [dm3] 3R_16781757_SNP [dm6]	T	A	2.696e^-4	0.86	INTERGENIC
3R	26276408	3R_26276408_SNP [dm3] 3R_30450686_SNP [dm6]	G	T	2.713e^-4	0.86	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8226988	2L_8226988_SNP [dm3] 2L_8226988_SNP [dm6]	G	A	2.720e^-4	0.86	NON_SYNONYMOUS_CODING Pvr INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16583349	2L_16583349_SNP [dm3] 2L_16583349_SNP [dm6]	T	A	2.720e^-4	0.86	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18128815	3L_18128815_SNP [dm3] 3L_18135715_SNP [dm6]	A	G	2.723e^-4	0.86	DOWNSTREAM CR44669 INTERGENIC
2L	4643096	2L_4643096_SNP [dm3] 2L_4643096_SNP [dm6]	T	A	2.732e^-4	0.86	DOWNSTREAM BG642163 INTRON CG15635
3L	8262976	3L_8262976_SNP [dm3] 3L_8269876_SNP [dm6]	C	G	2.733e^-4	0.86	INTRON Dscam4
2L	10539881	2L_10539881_SNP [dm3] 2L_10539881_SNP [dm6]	A	C	2.733e^-4	0.86	INTERGENIC
3R	12625628	3R_12625628_SNP [dm3] 3R_16799906_SNP [dm6]	T	A	2.734e^-4	0.86	UPSTREAM CR45750 INTERGENIC
3R	12625630	3R_12625630_DEL [dm3] 3R_16799908_DEL [dm6]	CCCGCATACAA...	C	2.734e^-4	0.86	UPSTREAM CR45750 INTERGENIC
3R	12625644	3R_12625644_SNP [dm3] 3R_16799922_SNP [dm6]	T	A	2.734e^-4	0.86	UPSTREAM CR45750 INTERGENIC
3R	12625655	3R_12625655_DEL [dm3] 3R_16799933_DEL [dm6]	ATGTGCGGAATC...	A	2.734e^-4	0.86	UPSTREAM CR45750 INTERGENIC
3R	19126719	3R_19126719_SNP [dm3] 3R_23300997_SNP [dm6]	A	T	2.741e^-4	0.86	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10581376	2L_10581376_SNP [dm3] 2L_10581376_SNP [dm6]	G	A	2.744e^-4	0.86	SPLICE_SITE_REGION CG34161 INTRON Trim9 & 1 other
3R	1839119	3R_1839119_SNP [dm3] 3R_6013397_SNP [dm6]	G	A	2.749e^-4	0.86	INTERGENIC
3R	19145055	3R_19145055_SNP [dm3] 3R_23319333_SNP [dm6]	A	G	2.751e^-4	0.86	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10377121	X_10377121_SNP [dm3] X_10483088_SNP [dm6]	C	T	2.755e^-4	0.86	SYNONYMOUS_CODING CG32687
2R	15779210	2R_15779210_SNP [dm3] 2R_19891705_SNP [dm6]	A	G	2.778e^-4	0.866	INTERGENIC
2L	2763791	2L_2763791_SNP [dm3] 2L_2763791_SNP [dm6]	C	T	2.798e^-4	0.868	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
X	8030602	X_8030602_SNP [dm3] X_8136569_SNP [dm6]	A	G	2.801e^-4	0.868	SYNONYMOUS_CODING CG2120 UPSTREAM cyr DOWNSTREAM Smox	TF binding site mE1_TFBS_sens
3L	1237846	3L_1237846_SNP [dm3] 3L_1237846_SNP [dm6]	G	T	2.805e^-4	0.868	SYNONYMOUS_CODING CG9192 INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3R	16674107	3R_16674107_DEL [dm3] 3R_20848385_DEL [dm6]	AAAGTTAGAAAATTTATTGT...	A	2.808e^-4	0.868	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7597272	3L_7597272_DEL [dm3] 3L_7604172_DEL [dm6]	GAATCACCGGGG...	G	2.809e^-4	0.868	UPSTREAM CG33275 INTRON CG33275
3R	19023986	3R_19023986_SNP [dm3] 3R_23198264_SNP [dm6]	C	A	2.817e^-4	0.868	INTRON cnc
3R	26395262	3R_26395262_SNP [dm3] 3R_30569540_SNP [dm6]	C	A	2.819e^-4	0.868	INTRON tmod	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17744179	3R_17744179_SNP [dm3] 3R_21918457_SNP [dm6]	C	T	2.837e^-4	0.869	INTERGENIC
2R	17991674	2R_17991674_SNP [dm3] 2R_22104169_SNP [dm6]	G	A	2.838e^-4	0.869	SYNONYMOUS_CODING CG6613	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11330684	3L_11330684_SNP [dm3] 3L_11337584_SNP [dm6]	G	T	2.840e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_sens
3L	2892142	3L_2892142_SNP [dm3] 3L_2892142_SNP [dm6]	A	T	2.842e^-4	0.869	UTR_5_PRIME spz5
2R	19340596	2R_19340596_SNP [dm3] 2R_23453073_SNP [dm6]	A	G	2.843e^-4	0.869	INTRON CG43795
X	6496913	X_6496913_INS [dm3] X_6602880_INS [dm6]	A	AA	2.853e^-4	0.87	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21196337	2L_21196337_SNP [dm3] 2L_21196337_SNP [dm6]	C	T	2.865e^-4	0.872	INTRON Ret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18325079	2L_18325079_DEL [dm3] 2L_18325079_DEL [dm6]	TATATCTTCCCATGT...	T	2.876e^-4	0.872	INTRON Fas3
2L	7664800	2L_7664800_SNP [dm3] 2L_7664800_SNP [dm6]	G	T	2.876e^-4	0.872	INTRON Slob
3R	18242528	3R_18242528_SNP [dm3] 3R_22416806_SNP [dm6]	C	A	2.877e^-4	0.872	SYNONYMOUS_CODING lqfR INTRON lqfR
3R	18601323	3R_18601323_SNP [dm3] 3R_22775601_SNP [dm6]	G	T	2.885e^-4	0.872	SYNONYMOUS_CODING Usp12-46 INTRON CG7029	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21201010	X_21201010_SNP [dm3] X_21329983_SNP [dm6]	G	A	2.888e^-4	0.872	UTR_3_PRIME tty	TF binding site BDTNP1_TFBS_prd
2R	10553089	2R_10553089_SNP [dm3] 2R_14665584_SNP [dm6]	G	A	2.907e^-4	0.874	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
2L	6269168	2L_6269168_SNP [dm3] 2L_6269168_SNP [dm6]	C	T	2.909e^-4	0.874	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26851272	3R_26851272_SNP [dm3] 3R_31025550_SNP [dm6]	A	C	2.917e^-4	0.874	INTERGENIC
3R	21375208	3R_21375208_SNP [dm3] 3R_25549486_SNP [dm6]	A	G	2.919e^-4	0.874	INTRON msi
2R	14531762	2R_14531762_SNP [dm3] 2R_18644257_SNP [dm6]	G	T	2.919e^-4	0.874	INTRON SP2637
2L	15216284	2L_15216284_SNP [dm3] 2L_15216284_SNP [dm6]	A	G	2.922e^-4	0.874	DOWNSTREAM CG43230 INTERGENIC
3R	20527085	3R_20527085_SNP [dm3] 3R_24701363_SNP [dm6]	A	G	2.935e^-4	0.876	INTRON slo
X	14230640	X_14230640_SNP [dm3] X_14336607_SNP [dm6]	T	C	2.940e^-4	0.876	INTRON dpr8
2L	18506476	2L_18506476_SNP [dm3] 2L_18506476_SNP [dm6]	G	A	2.953e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26580734	3R_26580734_SNP [dm3] 3R_30755012_SNP [dm6]	A	G	2.954e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16131116	3R_16131116_INS [dm3] 3R_20305394_INS [dm6]	A	AAAG	2.957e^-4	0.876	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	17205584	2L_17205584_SNP [dm3] 2L_17205584_SNP [dm6]	C	T	2.963e^-4	0.876	INTRON beat-IIIc
3R	12607461	3R_12607461_SNP [dm3] 3R_16781739_SNP [dm6]	C	A	2.964e^-4	0.876	INTERGENIC
3R	12625649	3R_12625649_SNP [dm3] 3R_16799927_SNP [dm6]	C	A	2.966e^-4	0.876	UPSTREAM CR45750 INTERGENIC
3R	12600819	3R_12600819_SNP [dm3] 3R_16775097_SNP [dm6]	T	C	2.978e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
X	9970144	X_9970144_SNP [dm3] X_10076111_SNP [dm6]	T	C	2.986e^-4	0.879	DOWNSTREAM ZAP3 INTRON ZAP3
3R	7142948	3R_7142948_INS [dm3] 3R_11317226_INS [dm6]	C	CAGAAC	2.996e^-4	0.88	INTERGENIC
3L	12290644	3L_12290644_DEL [dm3] 3L_12297544_DEL [dm6]	TTAAACTGTATTGTGTAATT...	T	3.006e^-4	0.88	INTERGENIC
X	18711021	X_18711021_SNP [dm3] X_18816988_SNP [dm6]	T	A	3.007e^-4	0.88	INTRON CG42450
2L	5266568	2L_5266568_SNP [dm3] 2L_5266568_SNP [dm6]	G	A	3.015e^-4	0.88	NON_SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3R	25920008	3R_25920008_SNP [dm3] 3R_30094286_SNP [dm6]	T	C	3.016e^-4	0.88	INTRON sima	TF binding site mE1_TFBS_inv
2R	9732226	2R_9732226_SNP [dm3] 2R_13844721_SNP [dm6]	C	A	3.024e^-4	0.88	INTRON Syngr
2L	3012457	2L_3012457_SNP [dm3] 2L_3012457_SNP [dm6]	T	G	3.024e^-4	0.88	INTRON CG17265	TF binding site mE1_TFBS_inv
3R	6132096	3R_6132096_SNP [dm3] 3R_10306374_SNP [dm6]	T	C	3.027e^-4	0.88	SYNONYMOUS_CODING CG43143
2R	11970127	2R_11970127_SNP [dm3] 2R_16082622_SNP [dm6]	G	A	3.031e^-4	0.88	UTR_3_PRIME Dg
2L	1245720	2L_1245720_SNP [dm3] 2L_1245720_SNP [dm6]	G	T	3.047e^-4	0.882	INTERGENIC
2L	12746729	2L_12746729_INS [dm3] 2L_12746729_INS [dm6]	T	CTCAGTAATAAAAACAAACT...	3.053e^-4	0.882	INTERGENIC
2L	14471383	2L_14471383_INS [dm3] 2L_14471383_INS [dm6]	A	AAAAA	3.055e^-4	0.882	INTERGENIC
2R	5717741	2R_5717741_DEL [dm3] 2R_9830236_DEL [dm6]	CAC	C	3.058e^-4	0.882	INTRON hebe
3R	19026067	3R_19026067_SNP [dm3] 3R_23200345_SNP [dm6]	C	T	3.065e^-4	0.882	UTR_5_PRIME cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8643143	2R_8643143_SNP [dm3] 2R_12755638_SNP [dm6]	A	G	3.066e^-4	0.882	UPSTREAM Taz & 1 other INTRON Taz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9597890	2R_9597890_SNP [dm3] 2R_13710385_SNP [dm6]	T	G	3.075e^-4	0.882	INTRON fas
2R	16122560	2R_16122560_SNP [dm3] 2R_20235055_SNP [dm6]	C	A	3.084e^-4	0.882	UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	4046227	2R_4046227_SNP [dm3] 2R_8158722_SNP [dm6]	G	C	3.088e^-4	0.882	UPSTREAM CR30374 DOWNSTREAM CR44068 & 2 others INTERGENIC
3R	11803254	3R_11803254_SNP [dm3] 3R_15977532_SNP [dm6]	T	C	3.089e^-4	0.882	NON_SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
2L	12856921	2L_12856921_SNP [dm3] 2L_12856921_SNP [dm6]	A	G	3.091e^-4	0.882	INTERGENIC
3R	16131164	3R_16131164_SNP [dm3] 3R_20305442_SNP [dm6]	A	T	3.093e^-4	0.882	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
X	15669489	X_15669489_SNP [dm3] X_15775456_SNP [dm6]	T	A	3.110e^-4	0.885	INTRON CG43672
3R	25802385	3R_25802385_SNP [dm3] 3R_29976663_SNP [dm6]	T	C	3.114e^-4	0.885	INTERGENIC
3R	19151631	3R_19151631_SNP [dm3] 3R_23325909_SNP [dm6]	A	T	3.124e^-4	0.886	INTRON pnt	TF binding site mE1_TFBS_sens
3R	12607454	3R_12607454_INS [dm3] 3R_16781732_INS [dm6]	T	TTTAAAAAAAATTATTGTTT...	3.131e^-4	0.887	INTERGENIC
X	5107789	X_5107789_SNP [dm3] X_5213756_SNP [dm6]	A	G	3.140e^-4	0.888	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10216744	2L_10216744_SNP [dm3] 2L_10216744_SNP [dm6]	T	G	3.161e^-4	0.892	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_inv
2R	3580732	2R_3580732_SNP [dm3] 2R_7693227_SNP [dm6]	A	G	3.177e^-4	0.892	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8387466	2L_8387466_SNP [dm3] 2L_8387466_SNP [dm6]	A	G	3.185e^-4	0.892	INTRON CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15378779	3R_15378779_SNP [dm3] 3R_19553057_SNP [dm6]	G	T	3.188e^-4	0.892	INTRON Dys
3L	10273224	3L_10273224_SNP [dm3] 3L_10280124_SNP [dm6]	C	A	3.192e^-4	0.892	INTERGENIC
3R	12624494	3R_12624494_SNP [dm3] 3R_16798772_SNP [dm6]	C	T	3.193e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2R	15954454	2R_15954454_DEL [dm3] 2R_20066949_DEL [dm6]	GGTAG	G	3.194e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14170743	3R_14170743_SNP [dm3] 3R_18345021_SNP [dm6]	T	A	3.197e^-4	0.892	INTRON CG15803
X	9841356	X_9841356_SNP [dm3] X_9947323_SNP [dm6]	T	G	3.199e^-4	0.892	INTERGENIC
3L	2359296	3L_2359296_SNP [dm3] 3L_2359296_SNP [dm6]	A	G	3.223e^-4	0.892	INTERGENIC
2L	3003605	2L_3003605_SNP [dm3] 2L_3003605_SNP [dm6]	G	C	3.224e^-4	0.892	INTRON CG17265	TF binding site mE1_TFBS_cad
3L	10530206	3L_10530206_SNP [dm3] 3L_10537106_SNP [dm6]	C	G	3.227e^-4	0.892	INTRON A2bp1
3L	11006070	3L_11006070_SNP [dm3] 3L_11012970_SNP [dm6]	G	T	3.228e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27177475	3R_27177475_SNP [dm3] 3R_31351753_SNP [dm6]	T	A	3.229e^-4	0.892	SYNONYMOUS_CODING CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5794329	2L_5794329_SNP [dm3] 2L_5794329_SNP [dm6]	C	G	3.238e^-4	0.892	INTRON CG9171
2L	1978627	2L_1978627_SNP [dm3] 2L_1978627_SNP [dm6]	T	C	3.242e^-4	0.892	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16672332	3R_16672332_SNP [dm3] 3R_20846610_SNP [dm6]	G	C	3.244e^-4	0.892	UPSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16673980	3R_16673980_INS [dm3] 3R_20848258_INS [dm6]	G	GAAA	3.246e^-4	0.892	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	17879927	3L_17879927_SNP [dm3] 3L_17886827_SNP [dm6]	C	A	3.247e^-4	0.892	UPSTREAM CG16775 & 1 other INTERGENIC
3L	17879931	3L_17879931_SNP [dm3] 3L_17886831_SNP [dm6]	A	C	3.247e^-4	0.892	UPSTREAM CG16775 & 1 other INTERGENIC
2L	10117604	2L_10117604_SNP [dm3] 2L_10117604_SNP [dm6]	C	T	3.253e^-4	0.892	INTRON CG44153 & 1 other
3R	12627921	3R_12627921_SNP [dm3] 3R_16802199_SNP [dm6]	A	T	3.264e^-4	0.894	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4064981	3L_4064981_SNP [dm3] 3L_4064981_SNP [dm6]	T	C	3.281e^-4	0.897	UTR_3_PRIME wit DOWNSTREAM dib
3R	12612434	3R_12612434_SNP [dm3] 3R_16786712_SNP [dm6]	T	G	3.298e^-4	0.897	INTERGENIC
2L	5300893	2L_5300893_SNP [dm3] 2L_5300893_SNP [dm6]	C	T	3.302e^-4	0.897	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5154824	2L_5154824_SNP [dm3] 2L_5154824_SNP [dm6]	G	A	3.308e^-4	0.897	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
3L	3561534	3L_3561534_SNP [dm3] 3L_3561534_SNP [dm6]	A	G	3.311e^-4	0.897	INTRON Eip63E
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	3.312e^-4	0.897	INTRON Rh7
3R	16674161	3R_16674161_SNP [dm3] 3R_20848439_SNP [dm6]	A	T	3.317e^-4	0.897	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17242255	2R_17242255_SNP [dm3] 2R_21354750_SNP [dm6]	A	G	3.322e^-4	0.897	DOWNSTREAM cv-2 INTERGENIC
2L	8444571	2L_8444571_SNP [dm3] 2L_8444571_SNP [dm6]	G	C	3.330e^-4	0.897	SYNONYMOUS_CODING CG31897
X	11342866	X_11342866_DEL [dm3] X_11448833_DEL [dm6]	TT	T	3.334e^-4	0.897	INTRON Evi5	TF binding site BDTNP1_TFBS_dl
3L	13464065	3L_13464065_SNP [dm3] 3L_13470965_SNP [dm6]	T	C	3.336e^-4	0.897	INTRON CG10089	TF binding site mE1_TFBS_cad
2R	9736785	2R_9736785_SNP [dm3] 2R_13849280_SNP [dm6]	T	A	3.338e^-4	0.897	NON_SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
2L	8447645	2L_8447645_SNP [dm3] 2L_8447645_SNP [dm6]	G	A	3.339e^-4	0.897	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3L	10316665	3L_10316665_DEL [dm3] 3L_10323565_DEL [dm6]	CTT	C	3.350e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9075534	X_9075534_SNP [dm3] X_9181501_SNP [dm6]	A	G	3.353e^-4	0.897	UTR_3_PRIME mei-P26
2L	5796078	2L_5796078_SNP [dm3] 2L_5796078_SNP [dm6]	A	G	3.354e^-4	0.897	INTRON CG9171
2R	11357216	2R_11357216_SNP [dm3] 2R_15469711_SNP [dm6]	T	A	3.357e^-4	0.897	UTR_3_PRIME CG43729
2L	13529927	2L_13529927_SNP [dm3] 2L_13529927_SNP [dm6]	C	T	3.374e^-4	0.897	UPSTREAM CG33642 DOWNSTREAM CG33641 INTRON B4
2L	12746792	2L_12746792_SNP [dm3] 2L_12746792_SNP [dm6]	G	T	3.375e^-4	0.897	INTERGENIC
3R	16674160	3R_16674160_SNP [dm3] 3R_20848438_SNP [dm6]	T	C	3.377e^-4	0.897	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16673935	3R_16673935_SNP [dm3] 3R_20848213_SNP [dm6]	G	T	3.386e^-4	0.897	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13872342	2R_13872342_DEL [dm3] 2R_17984837_DEL [dm6]	AA	T	3.387e^-4	0.897	INTRON dpr13
X	7489772	X_7489772_SNP [dm3] X_7595739_SNP [dm6]	T	A	3.392e^-4	0.897	INTERGENIC	regulatory region REDfly_CRMs
3R	334721	3R_334721_SNP [dm3] 3R_4508999_SNP [dm6]	T	C	3.394e^-4	0.897	INTRON CG34357
X	19890497	X_19890497_SNP [dm3] X_19996464_SNP [dm6]	C	T	3.395e^-4	0.897	INTERGENIC
X	14520875	X_14520875_SNP [dm3] X_14626842_SNP [dm6]	C	G	3.408e^-4	0.899	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22490288	3R_22490288_SNP [dm3] 3R_26664566_SNP [dm6]	G	T	3.421e^-4	0.899	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
3R	9296906	3R_9296906_SNP [dm3] 3R_13471184_SNP [dm6]	C	T	3.422e^-4	0.899	INTERGENIC
X	9970088	X_9970088_SNP [dm3] X_10076055_SNP [dm6]	A	C	3.423e^-4	0.899	DOWNSTREAM ZAP3 INTRON ZAP3
3L	18128835	3L_18128835_SNP [dm3] 3L_18135735_SNP [dm6]	T	A	3.443e^-4	0.9	DOWNSTREAM CR44669 INTERGENIC
2L	10607066	2L_10607066_SNP [dm3] 2L_10607066_SNP [dm6]	C	A	3.449e^-4	0.9	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17584552	2R_17584552_SNP [dm3] 2R_21697047_SNP [dm6]	G	A	3.456e^-4	0.9	UPSTREAM CngB DOWNSTREAM HmgZ INTRON CngB
3R	9247320	3R_9247320_SNP [dm3] 3R_13421598_SNP [dm6]	G	T	3.462e^-4	0.9	SYNONYMOUS_CODING Ir87a
3R	12650556	3R_12650556_SNP [dm3] 3R_16824834_SNP [dm6]	G	A	3.465e^-4	0.9	INTRON abd-A	TF binding site BDTNP1_TFBS_twi
3R	12608622	3R_12608622_SNP [dm3] 3R_16782900_SNP [dm6]	G	T	3.465e^-4	0.9	UPSTREAM CR44945 INTERGENIC
2L	19183632	2L_19183632_SNP [dm3] 2L_19183632_SNP [dm6]	C	T	3.476e^-4	0.9	UPSTREAM CG42688 & 1 other DOWNSTREAM gammaTub37C EXON CR17567
2R	11067178	2R_11067178_SNP [dm3] 2R_15179673_SNP [dm6]	T	C	3.489e^-4	0.9	INTRON igl
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	3.495e^-4	0.9	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17759972	2R_17759972_SNP [dm3] 2R_21872467_SNP [dm6]	C	G	3.498e^-4	0.9	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14839083	2L_14839083_DEL [dm3] 2L_14839083_DEL [dm6]	AGA	A	3.501e^-4	0.9	INTERGENIC
2L	7665082	2L_7665082_SNP [dm3] 2L_7665082_SNP [dm6]	C	A	3.502e^-4	0.9	UPSTREAM Myo28B1 INTRON Slob
3L	13464275	3L_13464275_SNP [dm3] 3L_13471175_SNP [dm6]	A	G	3.503e^-4	0.9	INTRON CG10089	TF binding site mE1_TFBS_cad
2L	3202580	2L_3202580_SNP [dm3] 2L_3202580_SNP [dm6]	C	T	3.511e^-4	0.9	INTERGENIC
2L	13969922	2L_13969922_SNP [dm3] 2L_13969922_SNP [dm6]	G	A	3.516e^-4	0.9	UTR_5_PRIME NimB4 UPSTREAM NimB5
3R	26413790	3R_26413790_SNP [dm3] 3R_30588068_SNP [dm6]	A	G	3.533e^-4	0.9	UPSTREAM CG9717 INTERGENIC
3L	7050507	3L_7050507_SNP [dm3] 3L_7057407_SNP [dm6]	G	T	3.536e^-4	0.9	INTERGENIC
2L	12596663	2L_12596663_SNP [dm3] 2L_12596663_SNP [dm6]	A	C	3.538e^-4	0.9	INTRON nub
3R	19133846	3R_19133846_SNP [dm3] 3R_23308124_SNP [dm6]	T	G	3.539e^-4	0.9	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13466650	3L_13466650_SNP [dm3] 3L_13473550_SNP [dm6]	G	T	3.539e^-4	0.9	INTRON CG10089
2L	4384096	2L_4384096_SNP [dm3] 2L_4384096_SNP [dm6]	A	G	3.567e^-4	0.9	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
2L	11429096	2L_11429096_DEL [dm3] 2L_11429096_DEL [dm6]	AAAAA	TG	3.575e^-4	0.9	INTERGENIC
3R	9249024	3R_9249024_DEL [dm3] 3R_13423302_DEL [dm6]	TGCATAT	T	3.576e^-4	0.9	DOWNSTREAM Ir87a INTERGENIC
X	18360653	X_18360653_SNP [dm3] X_18466620_SNP [dm6]	C	T	3.579e^-4	0.9	INTRON CG32547
3R	17148819	3R_17148819_DEL [dm3] 3R_21323097_DEL [dm6]	AA	A	3.580e^-4	0.9	INTRON CG16791
3R	11979747	3R_11979747_SNP [dm3] 3R_16154025_SNP [dm6]	A	T	3.580e^-4	0.9	UPSTREAM CG6006 INTERGENIC
3R	26531100	3R_26531100_SNP [dm3] 3R_30705378_SNP [dm6]	G	A	3.587e^-4	0.9	SYNONYMOUS_CODING CG31010	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5079975	2R_5079975_SNP [dm3] 2R_9192470_SNP [dm6]	G	T	3.597e^-4	0.9	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	8749189	2L_8749189_DEL [dm3] 2L_8749189_DEL [dm6]	TT	T	3.612e^-4	0.9	INTERGENIC
2R	17760093	2R_17760093_SNP [dm3] 2R_21872588_SNP [dm6]	T	G	3.616e^-4	0.9	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11856983	2R_11856983_SNP [dm3] 2R_15969478_SNP [dm6]	A	T	3.630e^-4	0.9	NON_SYNONYMOUS_CODING Strn-Mlck
2L	8582480	2L_8582480_SNP [dm3] 2L_8582480_SNP [dm6]	T	C	3.633e^-4	0.9	INTRON Sema-1a
2L	1940657	2L_1940657_SNP [dm3] 2L_1940657_SNP [dm6]	A	G	3.635e^-4	0.9	SYNONYMOUS_CODING CG7337 INTRON CG7337
3L	10704637	3L_10704637_SNP [dm3] 3L_10711537_SNP [dm6]	T	C	3.635e^-4	0.9	INTERGENIC
3R	16431498	3R_16431498_SNP [dm3] 3R_20605776_SNP [dm6]	C	T	3.637e^-4	0.9	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
2R	14531808	2R_14531808_SNP [dm3] 2R_18644303_SNP [dm6]	A	G	3.638e^-4	0.9	INTRON SP2637
3R	6512852	3R_6512852_SNP [dm3] 3R_10687130_SNP [dm6]	A	G	3.646e^-4	0.9	UTR_5_PRIME Skeletor	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19024846	X_19024846_SNP [dm3] X_19130813_SNP [dm6]	T	A	3.648e^-4	0.9	INTERGENIC
3L	18212785	3L_18212785_SNP [dm3] 3L_18219685_SNP [dm6]	T	A	3.648e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2550607	2L_2550607_SNP [dm3] 2L_2550607_SNP [dm6]	G	A	3.648e^-4	0.9	DOWNSTREAM CG3515 INTERGENIC
2L	3070786	2L_3070786_SNP [dm3] 2L_3070786_SNP [dm6]	G	A	3.652e^-4	0.9	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9734636	2R_9734636_SNP [dm3] 2R_13847131_SNP [dm6]	C	A	3.654e^-4	0.9	NON_SYNONYMOUS_CODING CG30484 UPSTREAM Syngr
3R	18240923	3R_18240923_SNP [dm3] 3R_22415201_SNP [dm6]	A	G	3.660e^-4	0.9	SYNONYMOUS_CODING lqfR INTRON lqfR
3L	12290639	3L_12290639_SNP [dm3] 3L_12297539_SNP [dm6]	A	C	3.664e^-4	0.9	INTERGENIC
2L	4022415	2L_4022415_SNP [dm3] 2L_4022415_SNP [dm6]	C	T	3.680e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20105540	2R_20105540_SNP [dm3] 2R_24218017_SNP [dm6]	G	A	3.680e^-4	0.9	INTRON CG30419
3R	21024980	3R_21024980_SNP [dm3] 3R_25199258_SNP [dm6]	C	G	3.681e^-4	0.9	UPSTREAM CG13654 INTRON Cad96Ca
2R	6338321	2R_6338321_SNP [dm3] 2R_10450816_SNP [dm6]	T	C	3.686e^-4	0.9	SYNONYMOUS_CODING Cyp49a1 INTRON Galphao
3L	8080457	3L_8080457_SNP [dm3] 3L_8087357_SNP [dm6]	G	T	3.694e^-4	0.9	DOWNSTREAM CG7565 INTRON Ect4
3R	7983980	3R_7983980_SNP [dm3] 3R_12158258_SNP [dm6]	T	C	3.701e^-4	0.9	INTRON dpr15
3R	12607456	3R_12607456_SNP [dm3] 3R_16781734_SNP [dm6]	A	G	3.702e^-4	0.9	INTERGENIC
3R	18359358	3R_18359358_SNP [dm3] 3R_22533636_SNP [dm6]	G	A	3.711e^-4	0.9	INTRON CG5326
2R	17205564	2R_17205564_INS [dm3] 2R_21318059_INS [dm6]	G	ATAATAAT	3.713e^-4	0.9	UTR_3_PRIME CG33655 INTRON CG9485
3L	9660220	3L_9660220_SNP [dm3] 3L_9667120_SNP [dm6]	T	A	3.717e^-4	0.9	INTRON fry
3R	26700011	3R_26700011_SNP [dm3] 3R_30874289_SNP [dm6]	T	C	3.719e^-4	0.9	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9249370	3R_9249370_SNP [dm3] 3R_13423648_SNP [dm6]	T	C	3.732e^-4	0.9	DOWNSTREAM Ir87a INTERGENIC
3R	778942	3R_778942_SNP [dm3] 3R_4953220_SNP [dm6]	G	A	3.736e^-4	0.9	UPSTREAM UbcD6 DOWNSTREAM CG14661 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	12617138	3R_12617138_SNP [dm3] 3R_16791416_SNP [dm6]	C	A	3.737e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10856726	2L_10856726_SNP [dm3] 2L_10856726_SNP [dm6]	G	A	3.742e^-4	0.9	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC
2L	10288756	2L_10288756_SNP [dm3] 2L_10288756_SNP [dm6]	C	G	3.742e^-4	0.9	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3L	11297800	3L_11297800_SNP [dm3] 3L_11304700_SNP [dm6]	T	G	3.746e^-4	0.9	INTERGENIC
3L	11297803	3L_11297803_DEL [dm3] 3L_11304703_DEL [dm6]	TCGGCCAG	T	3.746e^-4	0.9	INTERGENIC
3L	11297813	3L_11297813_SNP [dm3] 3L_11304713_SNP [dm6]	A	C	3.746e^-4	0.9	INTERGENIC
3R	26069873	3R_26069873_SNP [dm3] 3R_30244151_SNP [dm6]	G	A	3.752e^-4	0.9	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
2R	9344263	2R_9344263_SNP [dm3] 2R_13456758_SNP [dm6]	T	C	3.753e^-4	0.9	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13328028	2L_13328028_DEL [dm3] 2L_13328028_DEL [dm6]	GCTATG	A	3.763e^-4	0.9	INTRON CG43778
2L	13493838	2L_13493838_SNP [dm3] 2L_13493838_SNP [dm6]	T	C	3.774e^-4	0.9	INTRON CG42784
3R	12608661	3R_12608661_SNP [dm3] 3R_16782939_SNP [dm6]	C	T	3.775e^-4	0.9	UPSTREAM CR44945 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11242509	3L_11242509_SNP [dm3] 3L_11249409_SNP [dm6]	G	C	3.779e^-4	0.9	EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	26413793	3R_26413793_SNP [dm3] 3R_30588071_SNP [dm6]	A	C	3.779e^-4	0.9	UPSTREAM CG9717 INTERGENIC
3R	9862129	3R_9862129_DEL [dm3] 3R_14036407_DEL [dm6]	TTTTAAGC	T	3.794e^-4	0.9	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11221435	3L_11221435_SNP [dm3] 3L_11228335_SNP [dm6]	C	A	3.801e^-4	0.9	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10316673	3L_10316673_SNP [dm3] 3L_10323573_SNP [dm6]	A	G	3.805e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	19909525	2L_19909525_SNP [dm3] 2L_19909525_SNP [dm6]	A	G	3.807e^-4	0.9	NON_SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18162608	X_18162608_SNP [dm3] X_18268575_SNP [dm6]	A	T	3.808e^-4	0.9	INTERGENIC
3L	14480214	3L_14480214_SNP [dm3] 3L_14487114_SNP [dm6]	T	C	3.809e^-4	0.9	INTRON bbg
3R	26138443	3R_26138443_DEL [dm3] 3R_30312721_DEL [dm6]	CC	C	3.811e^-4	0.9	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	21109901	3R_21109901_SNP [dm3] 3R_25284179_SNP [dm6]	A	T	3.817e^-4	0.9	NON_SYNONYMOUS_CODING CG31300 DOWNSTREAM CG11892	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22738734	3R_22738734_SNP [dm3] 3R_26913012_SNP [dm6]	A	T	3.820e^-4	0.9	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8189285	2L_8189285_SNP [dm3] 2L_8189285_SNP [dm6]	A	G	3.829e^-4	0.9	UTR_3_PRIME Piezo
3R	19026044	3R_19026044_DEL [dm3] 3R_23200322_DEL [dm6]	TT	T	3.829e^-4	0.9	UTR_5_PRIME cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9245839	X_9245839_SNP [dm3] X_9351806_SNP [dm6]	T	C	3.830e^-4	0.9	INTRON CG34449
2R	17445042	2R_17445042_SNP [dm3] 2R_21557537_SNP [dm6]	T	C	3.842e^-4	0.9	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18808486	2L_18808486_SNP [dm3] 2L_18808486_SNP [dm6]	G	T	3.852e^-4	0.9	DOWNSTREAM CG42502 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv
2R	8362444	2R_8362444_SNP [dm3] 2R_12474939_SNP [dm6]	G	A	3.859e^-4	0.9	DOWNSTREAM CG8550 INTRON Dh44-R2
2L	3016388	2L_3016388_SNP [dm3] 2L_3016388_SNP [dm6]	G	T	3.860e^-4	0.9	DOWNSTREAM CG17224 & 1 other INTERGENIC
2L	10860402	2L_10860402_SNP [dm3] 2L_10860402_SNP [dm6]	C	T	3.860e^-4	0.9	SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6484483	3R_6484483_SNP [dm3] 3R_10658761_SNP [dm6]	T	C	3.862e^-4	0.9	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	16368546	2L_16368546_SNP [dm3] 2L_16368546_SNP [dm6]	C	A	3.866e^-4	0.9	INTERGENIC
2L	4088478	2L_4088478_SNP [dm3] 2L_4088478_SNP [dm6]	T	G	3.868e^-4	0.9	INTRON ed
X	10977708	X_10977708_SNP [dm3] X_11083675_SNP [dm6]	G	A	3.869e^-4	0.9	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	14812851	3R_14812851_SNP [dm3] 3R_18987129_SNP [dm6]	C	A	3.880e^-4	0.9	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D
X	5695708	X_5695708_SNP [dm3] X_5801675_SNP [dm6]	C	T	3.880e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26971514	3R_26971514_SNP [dm3] 3R_31145792_SNP [dm6]	G	A	3.880e^-4	0.9	INTRON Gycbeta100B
3L	12290592	3L_12290592_SNP [dm3] 3L_12297492_SNP [dm6]	C	T	3.887e^-4	0.9	INTERGENIC
2R	17589689	2R_17589689_SNP [dm3] 2R_21702184_SNP [dm6]	C	T	3.889e^-4	0.9	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
X	18285139	X_18285139_SNP [dm3] X_18391106_SNP [dm6]	A	G	3.893e^-4	0.9	SYNONYMOUS_CODING CG32549 DOWNSTREAM Tsf1	TF binding site mE1_TFBS_chinmo
2R	13744132	2R_13744132_SNP [dm3] 2R_17856627_SNP [dm6]	T	A	3.910e^-4	0.9	UTR_5_PRIME olf186-F INTRON olf186-F
2L	16341602	2L_16341602_SNP [dm3] 2L_16341602_SNP [dm6]	A	G	3.913e^-4	0.9	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
3R	6136985	3R_6136985_SNP [dm3] 3R_10311263_SNP [dm6]	T	C	3.915e^-4	0.9	DOWNSTREAM Bruce INTRON CG6293	TF binding site mE1_TFBS_cad
X	19996118	X_19996118_SNP [dm3] X_20102085_SNP [dm6]	C	A	3.927e^-4	0.9	INTERGENIC	transposable element FlyBase
2L	15565936	2L_15565936_SNP [dm3] 2L_15565936_SNP [dm6]	C	T	3.933e^-4	0.9	INTRON kek3
3R	8058062	3R_8058062_SNP [dm3] 3R_12232340_SNP [dm6]	T	C	3.933e^-4	0.9	NON_SYNONYMOUS_CODING Pglym87 DOWNSTREAM Cyp313a5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7124514	3R_7124514_SNP [dm3] 3R_11298792_SNP [dm6]	T	C	3.933e^-4	0.9	INTRON CR31386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25923539	3R_25923539_SNP [dm3] 3R_30097817_SNP [dm6]	A	C	3.934e^-4	0.9	INTRON sima	TF binding site BDTNP1_TFBS_dl
3R	16821867	3R_16821867_SNP [dm3] 3R_20996145_SNP [dm6]	C	A	3.936e^-4	0.9	INTRON Calx
3L	11898001	3L_11898001_SNP [dm3] 3L_11904901_SNP [dm6]	T	C	3.940e^-4	0.9	INTRON CG44837
X	4208151	X_4208151_SNP [dm3] X_4314118_SNP [dm6]	A	G	3.945e^-4	0.9	DOWNSTREAM mei-9 INTRON CR44957
2L	8440785	2L_8440785_SNP [dm3] 2L_8440785_SNP [dm6]	A	C	3.957e^-4	0.9	SYNONYMOUS_CODING mus201
3R	19151287	3R_19151287_SNP [dm3] 3R_23325565_SNP [dm6]	T	G	3.959e^-4	0.9	INTRON pnt
2L	13117635	2L_13117635_SNP [dm3] 2L_13117635_SNP [dm6]	T	C	3.962e^-4	0.9	INTERGENIC
3R	24954028	3R_24954028_DEL [dm3] 3R_29128306_DEL [dm6]	TT	T	3.969e^-4	0.9	DOWNSTREAM dgt6 & 1 other INTERGENIC
3L	11004879	3L_11004879_SNP [dm3] 3L_11011779_SNP [dm6]	A	G	3.975e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	1545823	3L_1545823_SNP [dm3] 3L_1545823_SNP [dm6]	C	A	3.983e^-4	0.9	UPSTREAM Cct1 & 1 other DOWNSTREAM CG7852 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20545539	3R_20545539_SNP [dm3] 3R_24719817_SNP [dm6]	T	A	3.985e^-4	0.9	UPSTREAM tok & 1 other INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21110097	3R_21110097_SNP [dm3] 3R_25284375_SNP [dm6]	T	C	3.990e^-4	0.9	SYNONYMOUS_CODING CG31300
2R	1639486	2R_1639486_SNP [dm3] 2R_5751981_SNP [dm6]	C	T	3.991e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26658579	3R_26658579_SNP [dm3] 3R_30832857_SNP [dm6]	G	T	3.993e^-4	0.9	INTRON CG15544
3R	20212227	3R_20212227_SNP [dm3] 3R_24386505_SNP [dm6]	A	T	3.996e^-4	0.9	INTRON CG5768
3L	8706921	3L_8706921_SNP [dm3] 3L_8713821_SNP [dm6]	T	C	4.011e^-4	0.901	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16722478	3R_16722478_SNP [dm3] 3R_20896756_SNP [dm6]	A	G	4.014e^-4	0.901	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10748251	3L_10748251_SNP [dm3] 3L_10755151_SNP [dm6]	C	T	4.020e^-4	0.901	INTERGENIC
X	4341517	X_4341517_SNP [dm3] X_4447484_SNP [dm6]	G	C	4.021e^-4	0.901	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	14170754	3R_14170754_SNP [dm3] 3R_18345032_SNP [dm6]	A	G	4.037e^-4	0.904	INTRON CG15803
2R	9459381	2R_9459381_SNP [dm3] 2R_13571876_SNP [dm6]	A	T	4.042e^-4	0.904	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	18271495	X_18271495_SNP [dm3] X_18377462_SNP [dm6]	C	A	4.055e^-4	0.904	UTR_3_PRIME CrebB DOWNSTREAM por & 1 other
3R	19732787	3R_19732787_SNP [dm3] 3R_23907065_SNP [dm6]	C	A	4.057e^-4	0.904	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13466841	3L_13466841_SNP [dm3] 3L_13473741_SNP [dm6]	A	G	4.066e^-4	0.904	INTRON CG10089
2L	5074047	2L_5074047_DEL [dm3] 2L_5074047_DEL [dm6]	GCATAAGTAAG...	G	4.077e^-4	0.904	INTRON pgant5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3915298	X_3915298_DEL [dm3] X_4021265_DEL [dm6]	ATATATTTT	A	4.084e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9011371	2L_9011371_SNP [dm3] 2L_9011371_SNP [dm6]	A	C	4.084e^-4	0.904	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3R	17685777	3R_17685777_SNP [dm3] 3R_21860055_SNP [dm6]	G	A	4.099e^-4	0.904	DOWNSTREAM CR45644 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	9293649	X_9293649_SNP [dm3] X_9399616_SNP [dm6]	T	C	4.101e^-4	0.904	INTRON mgl
2L	14970451	2L_14970451_SNP [dm3] 2L_14970451_SNP [dm6]	C	G	4.112e^-4	0.904	INTRON CG42313
2L	18315969	2L_18315969_SNP [dm3] 2L_18315969_SNP [dm6]	C	T	4.112e^-4	0.904	INTERGENIC
2L	3030962	2L_3030962_SNP [dm3] 2L_3030962_SNP [dm6]	T	A	4.116e^-4	0.904	UTR_5_PRIME GABPI UPSTREAM CR44147 DOWNSTREAM CG17219 INTRON GABPI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5336035	2L_5336035_SNP [dm3] 2L_5336035_SNP [dm6]	G	C	4.121e^-4	0.904	UTR_5_PRIME fusl INTRON fusl
2R	12333207	2R_12333207_SNP [dm3] 2R_16445702_SNP [dm6]	G	T	4.125e^-4	0.904	UPSTREAM CG15925 DOWNSTREAM CG4409 INTERGENIC
2L	14459171	2L_14459171_SNP [dm3] 2L_14459171_SNP [dm6]	A	G	4.131e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	4673504	3L_4673504_SNP [dm3] 3L_4673504_SNP [dm6]	C	T	4.135e^-4	0.904	INTRON axo	TF binding site BDTNP1_TFBS_twi
X	12951250	X_12951250_SNP [dm3] X_13057217_SNP [dm6]	G	C	4.137e^-4	0.904	INTRON rad
2R	11856987	2R_11856987_SNP [dm3] 2R_15969482_SNP [dm6]	T	A	4.138e^-4	0.904	SYNONYMOUS_CODING Strn-Mlck
X	20244999	X_20244999_DEL [dm3] X_20373972_DEL [dm6]	AGTGGGAGCCTCAAT...	A	4.141e^-4	0.904	INTERGENIC
3L	10845396	3L_10845396_SNP [dm3] 3L_10852296_SNP [dm6]	G	T	4.150e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12608637	3R_12608637_SNP [dm3] 3R_16782915_SNP [dm6]	G	T	4.151e^-4	0.904	UPSTREAM CR44945 INTERGENIC
3R	12608638	3R_12608638_SNP [dm3] 3R_16782916_SNP [dm6]	C	T	4.151e^-4	0.904	UPSTREAM CR44945 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7482139	3L_7482139_SNP [dm3] 3L_7489039_SNP [dm6]	G	T	4.161e^-4	0.904	INTERGENIC
3R	20527088	3R_20527088_SNP [dm3] 3R_24701366_SNP [dm6]	G	A	4.162e^-4	0.904	INTRON slo
3R	21636139	3R_21636139_SNP [dm3] 3R_25810417_SNP [dm6]	C	G	4.167e^-4	0.904	UPSTREAM CG5024 INTERGENIC
3L	14584687	3L_14584687_SNP [dm3] 3L_14591587_SNP [dm6]	G	T	4.171e^-4	0.904	INTRON HGTX	TF binding site BDTNP1_TFBS_da
2R	17445198	2R_17445198_SNP [dm3] 2R_21557693_SNP [dm6]	C	T	4.171e^-4	0.904	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10856708	2L_10856708_SNP [dm3] 2L_10856708_SNP [dm6]	T	A	4.177e^-4	0.904	UPSTREAM Dnz1 DOWNSTREAM ial INTERGENIC
3R	19148075	3R_19148075_SNP [dm3] 3R_23322353_SNP [dm6]	G	A	4.180e^-4	0.904	INTRON pnt	TF binding site mE1_TFBS_HSA
3L	5124191	3L_5124191_SNP [dm3] 3L_5131091_SNP [dm6]	T	C	4.183e^-4	0.904	UPSTREAM CG15212 DOWNSTREAM CG4597 INTERGENIC
2L	15028579	2L_15028579_SNP [dm3] 2L_15028579_SNP [dm6]	T	C	4.189e^-4	0.904	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_sens
3R	19126503	3R_19126503_SNP [dm3] 3R_23300781_SNP [dm6]	T	A	4.198e^-4	0.905	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12656224	2L_12656224_SNP [dm3] 2L_12656224_SNP [dm6]	T	G	4.212e^-4	0.905	UPSTREAM pdm2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15871399	3L_15871399_SNP [dm3] 3L_15878299_SNP [dm6]	C	A	4.212e^-4	0.905	INTRON pHCl
3L	4996381	3L_4996381_SNP [dm3] 3L_4996381_SNP [dm6]	T	G	4.213e^-4	0.905	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site mE1_TFBS_inv
2L	16581365	2L_16581365_SNP [dm3] 2L_16581365_SNP [dm6]	A	T	4.216e^-4	0.905	INTRON CG42389
3L	4315139	3L_4315139_SNP [dm3] 3L_4315139_SNP [dm6]	T	A	4.223e^-4	0.905	INTRON Claspin
3R	16130715	3R_16130715_INS [dm3] 3R_20304993_INS [dm6]	C	CC	4.235e^-4	0.905	UPSTREAM CG4367 INTERGENIC
X	13664874	X_13664874_SNP [dm3] X_13770841_SNP [dm6]	C	T	4.239e^-4	0.905	INTRON rdgB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16673897	3R_16673897_SNP [dm3] 3R_20848175_SNP [dm6]	T	C	4.243e^-4	0.905	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1828827	3L_1828827_SNP [dm3] 3L_1828827_SNP [dm6]	A	T	4.248e^-4	0.905	UTR_5_PRIME Cpr62Ba INTRON Cpr62Ba
3R	16573533	3R_16573533_SNP [dm3] 3R_20747811_SNP [dm6]	T	C	4.251e^-4	0.905	DOWNSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13815055	2R_13815055_SNP [dm3] 2R_17927550_SNP [dm6]	G	A	4.252e^-4	0.905	DOWNSTREAM Elk INTERGENIC
2L	18225988	2L_18225988_SNP [dm3] 2L_18225988_SNP [dm6]	A	T	4.253e^-4	0.905	INTRON CG42750
2L	20131224	2L_20131224_DEL [dm3] 2L_20131224_DEL [dm6]	TGTTTGCGGATTT...	T	4.261e^-4	0.905	INTERGENIC
2L	4105507	2L_4105507_SNP [dm3] 2L_4105507_SNP [dm6]	C	T	4.274e^-4	0.907	INTRON ed
2L	2389228	2L_2389228_SNP [dm3] 2L_2389228_SNP [dm6]	A	C	4.282e^-4	0.907	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21650900	3R_21650900_SNP [dm3] 3R_25825178_SNP [dm6]	A	C	4.311e^-4	0.911	EXON CR44949
3L	6672404	3L_6672404_SNP [dm3] 3L_6679304_SNP [dm6]	T	G	4.312e^-4	0.911	INTERGENIC
X	13680194	X_13680194_SNP [dm3] X_13786161_SNP [dm6]	A	T	4.319e^-4	0.911	INTRON inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14411574	X_14411574_DEL [dm3] X_14517541_DEL [dm6]	CACACACA	C	4.319e^-4	0.911	INTRON CR44110
2L	844270	2L_844270_SNP [dm3] 2L_844270_SNP [dm6]	T	G	4.326e^-4	0.911	INTRON drongo
3R	6836608	3R_6836608_DEL [dm3] 3R_11010886_DEL [dm6]	GTCTGTTTTTTACCA...	TAAAAC	4.329e^-4	0.911	INTRON CG34114
3R	16131132	3R_16131132_SNP [dm3] 3R_20305410_SNP [dm6]	T	A	4.337e^-4	0.912	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	3446457	2L_3446457_SNP [dm3] 2L_3446457_SNP [dm6]	A	G	4.348e^-4	0.913	NON_SYNONYMOUS_CODING CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16130934	3R_16130934_INS [dm3] 3R_20305212_INS [dm6]	T	TT	4.351e^-4	0.913	UPSTREAM CG4367 INTERGENIC
2L	13447514	2L_13447514_SNP [dm3] 2L_13447514_SNP [dm6]	A	G	4.358e^-4	0.913	DOWNSTREAM Hsp60D INTRON CG42784
3L	20062784	3L_20062784_SNP [dm3] 3L_20069684_SNP [dm6]	T	C	4.359e^-4	0.913	INTRON sNPF-R	TF binding site BDTNP1_TFBS_twi
2R	17145923	2R_17145923_SNP [dm3] 2R_21258418_SNP [dm6]	C	T	4.375e^-4	0.914	INTRON Rgk3
3L	4315141	3L_4315141_SNP [dm3] 3L_4315141_SNP [dm6]	A	T	4.378e^-4	0.914	INTRON Claspin
2R	10989708	2R_10989708_SNP [dm3] 2R_15102203_SNP [dm6]	A	T	4.395e^-4	0.917	INTERGENIC
X	6010263	X_6010263_SNP [dm3] X_6116230_SNP [dm6]	T	A	4.410e^-4	0.919	INTRON Ca-alpha1T
3L	11300009	3L_11300009_SNP [dm3] 3L_11306909_SNP [dm6]	G	C	4.413e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25387936	3R_25387936_SNP [dm3] 3R_29562214_SNP [dm6]	C	A	4.418e^-4	0.919	INTRON Dr
2L	7665306	2L_7665306_SNP [dm3] 2L_7665306_SNP [dm6]	T	C	4.425e^-4	0.919	UPSTREAM Myo28B1 INTRON Slob
3R	19177350	3R_19177350_SNP [dm3] 3R_23351628_SNP [dm6]	C	T	4.435e^-4	0.919	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
2L	4320581	2L_4320581_SNP [dm3] 2L_4320581_SNP [dm6]	G	A	4.441e^-4	0.919	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2357442	2L_2357442_SNP [dm3] 2L_2357442_SNP [dm6]	C	T	4.444e^-4	0.919	UPSTREAM CG9967 INTRON eys
2R	17770286	2R_17770286_SNP [dm3] 2R_21882781_SNP [dm6]	T	C	4.448e^-4	0.919	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_dl
2L	4578334	2L_4578334_SNP [dm3] 2L_4578334_SNP [dm6]	C	T	4.450e^-4	0.919	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	3012168	2L_3012168_SNP [dm3] 2L_3012168_SNP [dm6]	C	T	4.463e^-4	0.92	INTRON CG17265	TF binding site mE1_TFBS_inv
3R	13429957	3R_13429957_SNP [dm3] 3R_17604235_SNP [dm6]	A	C	4.466e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr
3R	15290886	3R_15290886_SNP [dm3] 3R_19465164_SNP [dm6]	T	A	4.479e^-4	0.92	INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9245018	3R_9245018_SNP [dm3] 3R_13419296_SNP [dm6]	T	C	4.480e^-4	0.92	UPSTREAM Ir87a INTERGENIC
3L	13464741	3L_13464741_SNP [dm3] 3L_13471641_SNP [dm6]	A	G	4.481e^-4	0.92	INTRON CG10089
3R	19132151	3R_19132151_SNP [dm3] 3R_23306429_SNP [dm6]	A	G	4.485e^-4	0.92	INTRON pnt
3R	6836534	3R_6836534_DEL [dm3] 3R_11010812_DEL [dm6]	TGTCAACTCCAAATTTACCC...	T	4.498e^-4	0.921	INTRON CG34114
3R	6836565	3R_6836565_SNP [dm3] 3R_11010843_SNP [dm6]	A	T	4.498e^-4	0.921	INTRON CG34114
3R	19148634	3R_19148634_SNP [dm3] 3R_23322912_SNP [dm6]	A	C	4.507e^-4	0.922	INTRON pnt
X	9979189	X_9979189_SNP [dm3] X_10085156_SNP [dm6]	T	G	4.526e^-4	0.924	UTR_3_PRIME CG2974 DOWNSTREAM CG2972
3R	20716404	3R_20716404_SNP [dm3] 3R_24890682_SNP [dm6]	C	T	4.530e^-4	0.924	INTRON CG31121
3L	16030202	3L_16030202_SNP [dm3] 3L_16037102_SNP [dm6]	C	A	4.539e^-4	0.924	NON_SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	3737881	2L_3737881_SNP [dm3] 2L_3737881_SNP [dm6]	A	G	4.541e^-4	0.924	INTRON CG10019
2R	16122797	2R_16122797_SNP [dm3] 2R_20235292_SNP [dm6]	T	A	4.547e^-4	0.924	UTR_3_PRIME CG44624 UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044
2R	16122799	2R_16122799_SNP [dm3] 2R_20235294_SNP [dm6]	T	A	4.547e^-4	0.924	UTR_3_PRIME CG44624 UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044
2L	9390290	2L_9390290_SNP [dm3] 2L_9390290_SNP [dm6]	C	T	4.562e^-4	0.925	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
3R	12627935	3R_12627935_SNP [dm3] 3R_16802213_SNP [dm6]	A	T	4.564e^-4	0.925	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20105554	2R_20105554_SNP [dm3] 2R_24218031_SNP [dm6]	A	G	4.565e^-4	0.925	INTRON CG30419
2L	15900617	2L_15900617_SNP [dm3] 2L_15900617_SNP [dm6]	G	A	4.578e^-4	0.926	UPSTREAM CG31823 DOWNSTREAM CG31821 INTERGENIC
2R	14418351	2R_14418351_SNP [dm3] 2R_18530846_SNP [dm6]	T	C	4.580e^-4	0.926	INTRON CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18285134	X_18285134_DEL [dm3] X_18391101_DEL [dm6]	GGAA	G	4.616e^-4	0.929	DOWNSTREAM Tsf1	TF binding site mE1_TFBS_chinmo
2L	4891761	2L_4891761_SNP [dm3] 2L_4891761_SNP [dm6]	T	C	4.617e^-4	0.929	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2765447	2L_2765447_SNP [dm3] 2L_2765447_SNP [dm6]	G	C	4.620e^-4	0.929	UPSTREAM aph-1 INTRON CG3077	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	14752040	X_14752040_SNP [dm3] X_14858007_SNP [dm6]	A	C	4.621e^-4	0.929	INTRON Flo2
2L	3363735	2L_3363735_SNP [dm3] 2L_3363735_SNP [dm6]	C	T	4.635e^-4	0.929	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12509783	2L_12509783_SNP [dm3] 2L_12509783_SNP [dm6]	T	A	4.638e^-4	0.929	INTRON bun
2L	2056598	2L_2056598_SNP [dm3] 2L_2056598_SNP [dm6]	C	G	4.641e^-4	0.929	INTRON Or22c
3R	26758874	3R_26758874_SNP [dm3] 3R_30933152_SNP [dm6]	G	A	4.642e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	22342609	3L_22342609_SNP [dm3] 3L_22349509_SNP [dm6]	G	T	4.657e^-4	0.929	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12069670	3L_12069670_SNP [dm3] 3L_12076570_SNP [dm6]	G	T	4.659e^-4	0.929	INTRON Sema-5c
X	16869633	X_16869633_SNP [dm3] X_16975600_SNP [dm6]	G	A	4.660e^-4	0.929	NON_SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8138443	3R_8138443_SNP [dm3] 3R_12312721_SNP [dm6]	A	T	4.661e^-4	0.929	NON_SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
3L	8031537	3L_8031537_SNP [dm3] 3L_8038437_SNP [dm6]	A	G	4.661e^-4	0.929	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	2111749	2L_2111749_SNP [dm3] 2L_2111749_SNP [dm6]	G	C	4.668e^-4	0.929	INTERGENIC
3L	9660590	3L_9660590_SNP [dm3] 3L_9667490_SNP [dm6]	G	T	4.679e^-4	0.931	INTRON fry
2L	14847338	2L_14847338_SNP [dm3] 2L_14847338_SNP [dm6]	C	T	4.684e^-4	0.931	INTRON CG15279
3R	18513730	3R_18513730_SNP [dm3] 3R_22688008_SNP [dm6]	C	T	4.707e^-4	0.934	SYNONYMOUS_CODING wfs1 DOWNSTREAM CG17625	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8170756	X_8170756_DEL [dm3] X_8276723_DEL [dm6]	AA	A	4.725e^-4	0.934	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636	TF binding site mE1_TFBS_HSA
3L	13165098	3L_13165098_SNP [dm3] 3L_13171998_SNP [dm6]	A	C	4.726e^-4	0.934	INTERGENIC
2L	12657049	2L_12657049_SNP [dm3] 2L_12657049_SNP [dm6]	G	A	4.732e^-4	0.934	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5735879	X_5735879_SNP [dm3] X_5841846_SNP [dm6]	C	T	4.732e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18145657	2L_18145657_SNP [dm3] 2L_18145657_SNP [dm6]	C	T	4.738e^-4	0.934	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	3000121	2L_3000121_INS [dm3] 2L_3000121_INS [dm6]	A	AGTTATA	4.739e^-4	0.934	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2490567	3R_2490567_SNP [dm3] 3R_6664845_SNP [dm6]	C	T	4.740e^-4	0.934	INTRON lab	TF binding site BDTNP1_TFBS_dl
2L	834838	2L_834838_SNP [dm3] 2L_834838_SNP [dm6]	G	C	4.751e^-4	0.934	DOWNSTREAM drongo INTRON drongo
3L	8691473	3L_8691473_SNP [dm3] 3L_8698373_SNP [dm6]	G	A	4.755e^-4	0.934	INTERGENIC
2R	7443637	2R_7443637_SNP [dm3] 2R_11556132_SNP [dm6]	G	A	4.770e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6833450	3R_6833450_SNP [dm3] 3R_11007728_SNP [dm6]	T	A	4.777e^-4	0.934	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14651591	2R_14651591_SNP [dm3] 2R_18764086_SNP [dm6]	A	G	4.779e^-4	0.934	INTRON Mctp
2L	4728511	2L_4728511_SNP [dm3] 2L_4728511_SNP [dm6]	T	C	4.783e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7183670	3L_7183670_SNP [dm3] 3L_7190570_SNP [dm6]	T	A	4.789e^-4	0.934	UPSTREAM Dscam2 INTERGENIC
X	5383330	X_5383330_SNP [dm3] X_5489297_SNP [dm6]	T	C	4.791e^-4	0.934	INTRON SPR
X	14520667	X_14520667_SNP [dm3] X_14626634_SNP [dm6]	C	T	4.794e^-4	0.934	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8373384	2L_8373384_SNP [dm3] 2L_8373384_SNP [dm6]	T	C	4.796e^-4	0.934	INTRON CG17292	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	13466731	3L_13466731_INS [dm3] 3L_13473631_INS [dm6]	A	ATA	4.796e^-4	0.934	INTRON CG10089
2R	1667018	2R_1667018_SNP [dm3] 2R_5779513_SNP [dm6]	C	G	4.809e^-4	0.936	INTRON ZnT41F
3L	3133971	3L_3133971_SNP [dm3] 3L_3133971_SNP [dm6]	A	G	4.817e^-4	0.936	UTR_5_PRIME CG11537 INTRON CG11537
3R	26651167	3R_26651167_SNP [dm3] 3R_30825445_SNP [dm6]	G	A	4.821e^-4	0.936	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
2R	17705915	2R_17705915_SNP [dm3] 2R_21818410_SNP [dm6]	T	C	4.837e^-4	0.936	INTERGENIC
2L	5075862	2L_5075862_SNP [dm3] 2L_5075862_SNP [dm6]	G	T	4.840e^-4	0.936	INTRON pgant5
3R	19609197	3R_19609197_SNP [dm3] 3R_23783475_SNP [dm6]	G	C	4.840e^-4	0.936	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4580106	2L_4580106_SNP [dm3] 2L_4580106_SNP [dm6]	A	T	4.842e^-4	0.936	INTRON dp
2L	8719121	2L_8719121_SNP [dm3] 2L_8719121_SNP [dm6]	T	G	4.867e^-4	0.939	INTRON raw
2L	10856948	2L_10856948_SNP [dm3] 2L_10856948_SNP [dm6]	C	G	4.870e^-4	0.939	SYNONYMOUS_CODING ial UPSTREAM Dnz1	TF binding site mE1_TFBS_chinmo
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	4.883e^-4	0.939	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
2L	10703207	2L_10703207_SNP [dm3] 2L_10703207_SNP [dm6]	T	A	4.885e^-4	0.939	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3L	11221517	3L_11221517_SNP [dm3] 3L_11228417_SNP [dm6]	G	T	4.886e^-4	0.939	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	26084804	3R_26084804_SNP [dm3] 3R_30259082_SNP [dm6]	C	T	4.887e^-4	0.939	INTERGENIC
3R	20545537	3R_20545537_SNP [dm3] 3R_24719815_SNP [dm6]	G	T	4.897e^-4	0.939	UPSTREAM tok & 1 other INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7183672	3L_7183672_SNP [dm3] 3L_7190572_SNP [dm6]	C	T	4.898e^-4	0.939	UPSTREAM Dscam2 INTERGENIC
2L	5267845	2L_5267845_SNP [dm3] 2L_5267845_SNP [dm6]	T	G	4.899e^-4	0.939	NON_SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12607481	3R_12607481_INS [dm3] 3R_16781759_INS [dm6]	T	TG	4.906e^-4	0.939	INTERGENIC
3R	25933887	3R_25933887_SNP [dm3] 3R_30108165_SNP [dm6]	A	C	4.923e^-4	0.941	INTRON sima
X	10158841	X_10158841_SNP [dm3] X_10264808_SNP [dm6]	G	T	4.934e^-4	0.942	UTR_3_PRIME CG12643
2L	1947380	2L_1947380_SNP [dm3] 2L_1947380_SNP [dm6]	C	G	4.943e^-4	0.942	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	19023068	3L_19023068_SNP [dm3] 3L_19029968_SNP [dm6]	G	A	4.944e^-4	0.942	INTRON nkd	TF binding site mE1_TFBS_HSA
X	10379259	X_10379259_SNP [dm3] X_10485226_SNP [dm6]	A	G	4.946e^-4	0.942	INTRON CG32687
3R	2492744	3R_2492744_SNP [dm3] 3R_6667022_SNP [dm6]	G	A	4.959e^-4	0.942	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13814713	3R_13814713_SNP [dm3] 3R_17988991_SNP [dm6]	G	A	4.960e^-4	0.942	INTRON cpo
3R	8870936	3R_8870936_SNP [dm3] 3R_13045214_SNP [dm6]	A	T	4.965e^-4	0.942	DOWNSTREAM CG45122 INTRON Hsc70-2
3L	11221440	3L_11221440_SNP [dm3] 3L_11228340_SNP [dm6]	A	G	4.968e^-4	0.942	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2355782	2L_2355782_SNP [dm3] 2L_2355782_SNP [dm6]	A	G	4.978e^-4	0.942	INTRON CG9967 & 1 other
2L	7516660	2L_7516660_SNP [dm3] 2L_7516660_SNP [dm6]	G	A	4.979e^-4	0.942	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3678317	2L_3678317_SNP [dm3] 2L_3678317_SNP [dm6]	G	T	5.004e^-4	0.942	INTRON CG34340
3L	11298020	3L_11298020_SNP [dm3] 3L_11304920_SNP [dm6]	T	C	5.006e^-4	0.942	INTERGENIC
3L	12790396	3L_12790396_DEL [dm3] 3L_12797296_DEL [dm6]	AAAATG	C	5.006e^-4	0.942	INTRON Atg1
2R	5860890	2R_5860890_SNP [dm3] 2R_9973385_SNP [dm6]	A	C	5.007e^-4	0.942	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	3375366	X_3375366_SNP [dm3] X_3481333_SNP [dm6]	T	A	5.008e^-4	0.942	START_GAINED CG10804 UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	3633364	2L_3633364_SNP [dm3] 2L_3633364_SNP [dm6]	C	G	5.017e^-4	0.942	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	11756049	2L_11756049_SNP [dm3] 2L_11756049_SNP [dm6]	A	G	5.018e^-4	0.942	INTERGENIC
2L	18913342	2L_18913342_SNP [dm3] 2L_18913342_SNP [dm6]	G	A	5.020e^-4	0.942	INTERGENIC
3R	16131377	3R_16131377_SNP [dm3] 3R_20305655_SNP [dm6]	A	G	5.022e^-4	0.942	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

Cuticul_NI_20 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results