DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.048e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.078989
In_3R_K	0.004364

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.5412	0.023
In_3R_K	15.101	0.0005

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2788 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	7.292e^-8	0.137	SYNONYMOUS_CODING msps
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	4.037e^-7	0.209	INTRON Rh7
3R	11882674	3R_11882674_SNP [dm3] 3R_16056952_SNP [dm6]	A	T	5.096e^-7	0.209	INTRON msps
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	6.080e^-7	0.209	INTRON beat-Vc
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	7.653e^-7	0.209	SYNONYMOUS_CODING msps
3R	11882771	3R_11882771_SNP [dm3] 3R_16057049_SNP [dm6]	G	C	8.889e^-7	0.209	INTRON msps
3R	11882689	3R_11882689_SNP [dm3] 3R_16056967_SNP [dm6]	T	A	9.201e^-7	0.209	INTRON msps
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	9.675e^-7	0.209	INTRON msps
3R	11952910	3R_11952910_SNP [dm3] 3R_16127188_SNP [dm6]	A	C	1.013e^-6	0.209	INTRON Sb
3R	11882770	3R_11882770_SNP [dm3] 3R_16057048_SNP [dm6]	T	A	1.185e^-6	0.209	INTRON msps
3R	11882758	3R_11882758_SNP [dm3] 3R_16057036_SNP [dm6]	C	A	1.224e^-6	0.209	INTRON msps
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	1.351e^-6	0.211	DOWNSTREAM CG10185 INTRON msps
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	1.636e^-6	0.236	INTRON CG42524
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	1.846e^-6	0.238	DOWNSTREAM CG10185 INTRON msps
3R	11882859	3R_11882859_DEL [dm3] 3R_16057137_DEL [dm6]	TCTTCTACCGT...	T	1.938e^-6	0.238	INTRON msps
3R	11882803	3R_11882803_SNP [dm3] 3R_16057081_SNP [dm6]	T	G	2.381e^-6	0.238	INTRON msps
3R	11882856	3R_11882856_SNP [dm3] 3R_16057134_SNP [dm6]	T	A	2.528e^-6	0.238	INTRON msps
3R	11882834	3R_11882834_SNP [dm3] 3R_16057112_SNP [dm6]	A	G	2.571e^-6	0.238	INTRON msps
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	2.776e^-6	0.238	INTRON Octbeta3R
3R	12127274	3R_12127274_SNP [dm3] 3R_16301552_SNP [dm6]	A	G	3.013e^-6	0.238	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	3.088e^-6	0.238	INTERGENIC
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	3.132e^-6	0.238	UPSTREAM hoe1 INTRON hoe1
2L	5717451	2L_5717451_SNP [dm3] 2L_5717451_SNP [dm6]	A	T	3.211e^-6	0.238	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	3.237e^-6	0.238	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11887921	3R_11887921_SNP [dm3] 3R_16062199_SNP [dm6]	T	G	3.240e^-6	0.238	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	3.301e^-6	0.238	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	3.540e^-6	0.243	INTRON grsm
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	3.703e^-6	0.243	INTRON ssh	TF binding site mE1_TFBS_chinmo
2L	5717469	2L_5717469_SNP [dm3] 2L_5717469_SNP [dm6]	T	A	3.875e^-6	0.243	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	3.884e^-6	0.243	INTRON Rh7
3R	14996833	3R_14996833_SNP [dm3] 3R_19171111_SNP [dm6]	C	G	4.266e^-6	0.249	DOWNSTREAM sqz INTERGENIC
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	4.268e^-6	0.249	INTRON btsz
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	4.383e^-6	0.249	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2R	17768964	2R_17768964_SNP [dm3] 2R_21881459_SNP [dm6]	C	T	4.757e^-6	0.262	UTR_3_PRIME PpN58A INTRON Fili
3L	11293051	3L_11293051_INS [dm3] 3L_11299951_INS [dm6]	T	TG	5.156e^-6	0.275	INTERGENIC
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	5.269e^-6	0.275	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	5.692e^-6	0.287	INTRON grsm
2L	14674837	2L_14674837_SNP [dm3] 2L_14674837_SNP [dm6]	G	A	5.831e^-6	0.287	INTRON osp
3L	12458581	3L_12458581_SNP [dm3] 3L_12465481_SNP [dm6]	A	T	5.977e^-6	0.287	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	6.137e^-6	0.288	INTERGENIC
2L	14674851	2L_14674851_SNP [dm3] 2L_14674851_SNP [dm6]	A	G	6.359e^-6	0.291	INTRON osp
3R	11883481	3R_11883481_SNP [dm3] 3R_16057759_SNP [dm6]	T	C	6.659e^-6	0.295	SYNONYMOUS_CODING msps
3R	11885416	3R_11885416_SNP [dm3] 3R_16059694_SNP [dm6]	C	T	6.767e^-6	0.295	DOWNSTREAM CG10185 INTRON msps
3R	11883598	3R_11883598_SNP [dm3] 3R_16057876_SNP [dm6]	T	C	7.267e^-6	0.309	SYNONYMOUS_CODING msps
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	7.408e^-6	0.309	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	20769505	3R_20769505_SNP [dm3] 3R_24943783_SNP [dm6]	C	T	8.377e^-6	0.328	UTR_5_PRIME ssh INTRON ssh
3R	11902980	3R_11902980_SNP [dm3] 3R_16077258_SNP [dm6]	C	T	8.826e^-6	0.328	SYNONYMOUS_CODING Mhcl
3R	11863907	3R_11863907_SNP [dm3] 3R_16038185_SNP [dm6]	C	T	9.034e^-6	0.328	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10659191	3R_10659191_SNP [dm3] 3R_14833469_SNP [dm6]	G	C	9.044e^-6	0.328	INTRON btsz
2R	19227208	2R_19227208_SNP [dm3] 2R_23339685_SNP [dm6]	T	C	9.296e^-6	0.328	INTERGENIC
3R	11887639	3R_11887639_SNP [dm3] 3R_16061917_SNP [dm6]	G	A	9.391e^-6	0.328	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	9.831e^-6	0.328	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	11889864	3R_11889864_SNP [dm3] 3R_16064142_SNP [dm6]	A	G	1.004e^-5	0.328	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
3R	11887627	3R_11887627_SNP [dm3] 3R_16061905_SNP [dm6]	G	A	1.015e^-5	0.328	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	1.039e^-5	0.328	INTRON Octbeta3R
3L	12458635	3L_12458635_SNP [dm3] 3L_12465535_SNP [dm6]	G	A	1.041e^-5	0.328	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	1.049e^-5	0.328	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10664770	3R_10664770_SNP [dm3] 3R_14839048_SNP [dm6]	C	T	1.050e^-5	0.328	INTRON btsz
X	4803855	X_4803855_DEL [dm3] X_4909822_DEL [dm6]	ATA	A	1.051e^-5	0.328	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10663528	3R_10663528_SNP [dm3] 3R_14837806_SNP [dm6]	C	T	1.052e^-5	0.328	INTRON btsz
X	6905223	X_6905223_SNP [dm3] X_7011190_SNP [dm6]	G	A	1.103e^-5	0.328	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1697095	2L_1697095_SNP [dm3] 2L_1697095_SNP [dm6]	A	G	1.131e^-5	0.328	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5482483	X_5482483_SNP [dm3] X_5588450_SNP [dm6]	G	T	1.163e^-5	0.328	INTERGENIC
X	5482484	X_5482484_SNP [dm3] X_5588451_SNP [dm6]	T	A	1.163e^-5	0.328	INTERGENIC
X	5482486	X_5482486_SNP [dm3] X_5588453_SNP [dm6]	T	C	1.163e^-5	0.328	INTERGENIC
3R	11945356	3R_11945356_SNP [dm3] 3R_16119634_SNP [dm6]	A	T	1.168e^-5	0.328	INTRON Sb
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	1.191e^-5	0.328	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14674740	2L_14674740_SNP [dm3] 2L_14674740_SNP [dm6]	A	T	1.198e^-5	0.328	INTRON osp
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	1.208e^-5	0.328	INTRON CG14877
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	1.267e^-5	0.34	SPLICE_SITE_REGION CG6293 INTRON CG6293
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	1.288e^-5	0.34	INTERGENIC
2L	10079962	2L_10079962_SNP [dm3] 2L_10079962_SNP [dm6]	T	A	1.334e^-5	0.348	INTRON CG44153	TF binding site mE1_TFBS_inv
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.390e^-5	0.353	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	1.400e^-5	0.353	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3L	12458544	3L_12458544_SNP [dm3] 3L_12465444_SNP [dm6]	G	T	1.450e^-5	0.353	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12458569	3L_12458569_SNP [dm3] 3L_12465469_SNP [dm6]	A	G	1.469e^-5	0.353	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12458571	3L_12458571_SNP [dm3] 3L_12465471_SNP [dm6]	A	T	1.469e^-5	0.353	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12458590	3L_12458590_DEL [dm3] 3L_12465490_DEL [dm6]	ACA	C	1.469e^-5	0.353	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	8031554	3R_8031554_SNP [dm3] 3R_12205832_SNP [dm6]	C	A	1.538e^-5	0.356	UPSTREAM tRNA:CR31356 INTERGENIC
2L	2656073	2L_2656073_SNP [dm3] 2L_2656073_SNP [dm6]	A	G	1.582e^-5	0.356	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	1.594e^-5	0.356	INTERGENIC
2R	20216261	2R_20216261_SNP [dm3] 2R_24328738_SNP [dm6]	C	G	1.599e^-5	0.356	UPSTREAM CR44810 INTRON CR44810
X	5724242	X_5724242_SNP [dm3] X_5830209_SNP [dm6]	G	C	1.618e^-5	0.356	INTRON CG15765
2L	14674849	2L_14674849_SNP [dm3] 2L_14674849_SNP [dm6]	C	T	1.635e^-5	0.356	INTRON osp
3R	11971180	3R_11971180_SNP [dm3] 3R_16145458_SNP [dm6]	G	T	1.655e^-5	0.356	UTR_3_PRIME CG5903 DOWNSTREAM CG5903 & 1 other	TF binding site mE1_TFBS_cad
3L	13908841	3L_13908841_SNP [dm3] 3L_13915741_SNP [dm6]	C	T	1.666e^-5	0.356	INTRON Rgl
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	1.670e^-5	0.356	INTERGENIC
3R	6538729	3R_6538729_SNP [dm3] 3R_10713007_SNP [dm6]	A	G	1.771e^-5	0.356	INTERGENIC
2L	2612179	2L_2612179_SNP [dm3] 2L_2612179_SNP [dm6]	T	C	1.780e^-5	0.356	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	1.792e^-5	0.356	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11293044	3L_11293044_SNP [dm3] 3L_11299944_SNP [dm6]	A	T	1.816e^-5	0.356	INTERGENIC
3L	15447645	3L_15447645_SNP [dm3] 3L_15454545_SNP [dm6]	C	A	1.818e^-5	0.356	INTERGENIC
3L	12458562	3L_12458562_SNP [dm3] 3L_12465462_SNP [dm6]	A	T	1.852e^-5	0.356	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12458585	3L_12458585_SNP [dm3] 3L_12465485_SNP [dm6]	T	A	1.852e^-5	0.356	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	12458596	3L_12458596_SNP [dm3] 3L_12465496_SNP [dm6]	C	T	1.852e^-5	0.356	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	12458604	3L_12458604_SNP [dm3] 3L_12465504_SNP [dm6]	G	T	1.852e^-5	0.356	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	1.864e^-5	0.356	INTRON tinc
3R	6573840	3R_6573840_SNP [dm3] 3R_10748118_SNP [dm6]	T	G	1.871e^-5	0.356	INTRON TkR86C
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	1.897e^-5	0.356	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	13655973	3R_13655973_SNP [dm3] 3R_17830251_SNP [dm6]	C	T	1.921e^-5	0.356	INTRON tinc

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.873e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	1.922e-05
In_3R_K	1.827e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	18.2764	0.0001
In_3R_K	17.0056	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2168 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	2.236e^-14	4.089e^-8	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	4.360e^-14	4.089e^-8	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.866e^-13	1.166e^-7	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	2.728e^-13	1.279e^-7	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	3.518e^-13	1.320e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	8.890e^-13	2.779e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.112e^-12	2.981e^-7	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	2.669e^-12	6.257e^-7	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	1.315e^-11	2.740e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	3.752e^-11	7.037e^-6	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	1.946e^-10	3.318e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	8.477e^-10	1.325e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	1.030e^-9	1.486e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	2.995e^-9	3.516e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.133e^-9	3.516e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	3.187e^-9	3.516e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	3.187e^-9	3.516e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	3.939e^-9	4.079e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	4.132e^-9	4.079e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	5.148e^-9	4.828e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	6.616e^-9	5.909e^-4	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	7.648e^-9	6.520e^-4	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	1.003e^-8	8.178e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	1.602e^-8	0.001	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	2.126e^-8	0.002	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	2.553e^-8	0.002	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	3.490e^-8	0.002	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	3.714e^-8	0.002	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	4.161e^-8	0.003	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	5.993e^-8	0.004	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	6.921e^-8	0.004	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	7.473e^-8	0.004	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	8.448e^-8	0.005	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	8.450e^-8	0.005	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	1.389e^-7	0.007	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	1.896e^-7	0.01	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	2.240e^-7	0.011	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	2.583e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	2.583e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	3.143e^-7	0.015	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	3.357e^-7	0.015	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	3.401e^-7	0.015	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	3.888e^-7	0.017	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	3.901e^-7	0.017	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	4.052e^-7	0.017	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	4.173e^-7	0.017	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	4.771e^-7	0.019	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	4.999e^-7	0.02	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	5.420e^-7	0.021	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	5.630e^-7	0.021	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	5.765e^-7	0.021	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	6.238e^-7	0.022	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	8.730e^-7	0.031	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	9.319e^-7	0.032	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8545652	2L_8545652_SNP [dm3] 2L_8545652_SNP [dm6]	A	G	9.393e^-7	0.032	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	1.149e^-6	0.038	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	1.302e^-6	0.043	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	1.358e^-6	0.044	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	1.442e^-6	0.046	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	1.617e^-6	0.051	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	1.941e^-6	0.06	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.987e^-6	0.06	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	2.003e^-6	0.06	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	2.370e^-6	0.069	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	2.481e^-6	0.07	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	2.502e^-6	0.07	INTRON CG42540
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	2.516e^-6	0.07	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26907593	3R_26907593_DEL [dm3] 3R_31081871_DEL [dm6]	CTTATAAT	A	2.839e^-6	0.078	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14760140	2R_14760140_DEL [dm3] 2R_18872635_DEL [dm6]	CATAATT	C	2.877e^-6	0.078	INTERGENIC
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	3.180e^-6	0.085	UTR_5_PRIME CG7201
3R	19066316	3R_19066316_DEL [dm3] 3R_23240594_DEL [dm6]	CC	C	3.374e^-6	0.089	UPSTREAM CG4467 INTRON CG4467
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	3.781e^-6	0.098	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	3.802e^-6	0.098	UPSTREAM Dh31 INTERGENIC
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	3.901e^-6	0.099	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	4.338e^-6	0.108	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19066076	3R_19066076_SNP [dm3] 3R_23240354_SNP [dm6]	G	A	4.564e^-6	0.112	UPSTREAM CG4467 INTRON CG4467
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	4.772e^-6	0.112	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	4.815e^-6	0.112	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11878211	2R_11878211_SNP [dm3] 2R_15990706_SNP [dm6]	A	G	4.844e^-6	0.112	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11880191	2R_11880191_SNP [dm3] 2R_15992686_SNP [dm6]	C	G	4.877e^-6	0.112	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	4.887e^-6	0.112	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	4.900e^-6	0.112	INTERGENIC
3L	12630119	3L_12630119_SNP [dm3] 3L_12637019_SNP [dm6]	G	A	5.143e^-6	0.115	INTRON CR32111
3R	19066109	3R_19066109_SNP [dm3] 3R_23240387_SNP [dm6]	C	G	5.164e^-6	0.115	UPSTREAM CG4467 INTRON CG4467
3R	26907606	3R_26907606_SNP [dm3] 3R_31081884_SNP [dm6]	T	A	5.350e^-6	0.117	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	5.374e^-6	0.117	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	5.512e^-6	0.119	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	5.751e^-6	0.123	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16841934	X_16841934_SNP [dm3] X_16947901_SNP [dm6]	T	G	6.545e^-6	0.136	DOWNSTREAM CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl
2R	16076213	2R_16076213_SNP [dm3] 2R_20188708_SNP [dm6]	A	G	6.548e^-6	0.136	INTERGENIC
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	6.717e^-6	0.138	INTRON 5-HT1A
3R	19066082	3R_19066082_SNP [dm3] 3R_23240360_SNP [dm6]	G	T	6.902e^-6	0.141	UPSTREAM CG4467 INTRON CG4467
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	7.047e^-6	0.142	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	7.444e^-6	0.149	INTRON CG30463
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	7.619e^-6	0.15	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12630105	3L_12630105_SNP [dm3] 3L_12637005_SNP [dm6]	A	T	7.861e^-6	0.152	INTRON CR32111
3L	12630107	3L_12630107_SNP [dm3] 3L_12637007_SNP [dm6]	A	T	7.861e^-6	0.152	INTRON CR32111
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	8.154e^-6	0.156	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	8.562e^-6	0.16	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	19066119	3R_19066119_SNP [dm3] 3R_23240397_SNP [dm6]	T	C	8.632e^-6	0.16	UPSTREAM CG4467 INTRON CG4467

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By genomic position
Variant impact
Gene name

Cuticul_6_C24_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results