DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.048e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.078989
In_3R_K	0.004364

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.5412	0.023
In_3R_K	15.101	0.0005

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2788 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	7.292e^-8	0.137	SYNONYMOUS_CODING msps
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	4.037e^-7	0.209	INTRON Rh7
3R	11882674	3R_11882674_SNP [dm3] 3R_16056952_SNP [dm6]	A	T	5.096e^-7	0.209	INTRON msps
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	6.080e^-7	0.209	INTRON beat-Vc
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	7.653e^-7	0.209	SYNONYMOUS_CODING msps
3R	11882771	3R_11882771_SNP [dm3] 3R_16057049_SNP [dm6]	G	C	8.889e^-7	0.209	INTRON msps
3R	11882689	3R_11882689_SNP [dm3] 3R_16056967_SNP [dm6]	T	A	9.201e^-7	0.209	INTRON msps
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	9.675e^-7	0.209	INTRON msps
3R	11952910	3R_11952910_SNP [dm3] 3R_16127188_SNP [dm6]	A	C	1.013e^-6	0.209	INTRON Sb
3R	11882770	3R_11882770_SNP [dm3] 3R_16057048_SNP [dm6]	T	A	1.185e^-6	0.209	INTRON msps
3R	11882758	3R_11882758_SNP [dm3] 3R_16057036_SNP [dm6]	C	A	1.224e^-6	0.209	INTRON msps
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	1.351e^-6	0.211	DOWNSTREAM CG10185 INTRON msps
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	1.636e^-6	0.236	INTRON CG42524
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	1.846e^-6	0.238	DOWNSTREAM CG10185 INTRON msps
3R	11882859	3R_11882859_DEL [dm3] 3R_16057137_DEL [dm6]	TCTTCTACCGT...	T	1.938e^-6	0.238	INTRON msps
3R	11882803	3R_11882803_SNP [dm3] 3R_16057081_SNP [dm6]	T	G	2.381e^-6	0.238	INTRON msps
3R	11882856	3R_11882856_SNP [dm3] 3R_16057134_SNP [dm6]	T	A	2.528e^-6	0.238	INTRON msps
3R	11882834	3R_11882834_SNP [dm3] 3R_16057112_SNP [dm6]	A	G	2.571e^-6	0.238	INTRON msps
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	2.776e^-6	0.238	INTRON Octbeta3R
3R	12127274	3R_12127274_SNP [dm3] 3R_16301552_SNP [dm6]	A	G	3.013e^-6	0.238	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	3.088e^-6	0.238	INTERGENIC
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	3.132e^-6	0.238	UPSTREAM hoe1 INTRON hoe1
2L	5717451	2L_5717451_SNP [dm3] 2L_5717451_SNP [dm6]	A	T	3.211e^-6	0.238	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	3.237e^-6	0.238	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11887921	3R_11887921_SNP [dm3] 3R_16062199_SNP [dm6]	T	G	3.240e^-6	0.238	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	3.301e^-6	0.238	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	3.540e^-6	0.243	INTRON grsm
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	3.703e^-6	0.243	INTRON ssh	TF binding site mE1_TFBS_chinmo
2L	5717469	2L_5717469_SNP [dm3] 2L_5717469_SNP [dm6]	T	A	3.875e^-6	0.243	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	3.884e^-6	0.243	INTRON Rh7
3R	14996833	3R_14996833_SNP [dm3] 3R_19171111_SNP [dm6]	C	G	4.266e^-6	0.249	DOWNSTREAM sqz INTERGENIC
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	4.268e^-6	0.249	INTRON btsz
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	4.383e^-6	0.249	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2R	17768964	2R_17768964_SNP [dm3] 2R_21881459_SNP [dm6]	C	T	4.757e^-6	0.262	UTR_3_PRIME PpN58A INTRON Fili
3L	11293051	3L_11293051_INS [dm3] 3L_11299951_INS [dm6]	T	TG	5.156e^-6	0.275	INTERGENIC
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	5.269e^-6	0.275	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	5.692e^-6	0.287	INTRON grsm
2L	14674837	2L_14674837_SNP [dm3] 2L_14674837_SNP [dm6]	G	A	5.831e^-6	0.287	INTRON osp
3L	12458581	3L_12458581_SNP [dm3] 3L_12465481_SNP [dm6]	A	T	5.977e^-6	0.287	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	6.137e^-6	0.288	INTERGENIC
2L	14674851	2L_14674851_SNP [dm3] 2L_14674851_SNP [dm6]	A	G	6.359e^-6	0.291	INTRON osp
3R	11883481	3R_11883481_SNP [dm3] 3R_16057759_SNP [dm6]	T	C	6.659e^-6	0.295	SYNONYMOUS_CODING msps
3R	11885416	3R_11885416_SNP [dm3] 3R_16059694_SNP [dm6]	C	T	6.767e^-6	0.295	DOWNSTREAM CG10185 INTRON msps
3R	11883598	3R_11883598_SNP [dm3] 3R_16057876_SNP [dm6]	T	C	7.267e^-6	0.309	SYNONYMOUS_CODING msps
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	7.408e^-6	0.309	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	20769505	3R_20769505_SNP [dm3] 3R_24943783_SNP [dm6]	C	T	8.377e^-6	0.328	UTR_5_PRIME ssh INTRON ssh
3R	11902980	3R_11902980_SNP [dm3] 3R_16077258_SNP [dm6]	C	T	8.826e^-6	0.328	SYNONYMOUS_CODING Mhcl
3R	11863907	3R_11863907_SNP [dm3] 3R_16038185_SNP [dm6]	C	T	9.034e^-6	0.328	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10659191	3R_10659191_SNP [dm3] 3R_14833469_SNP [dm6]	G	C	9.044e^-6	0.328	INTRON btsz
2R	19227208	2R_19227208_SNP [dm3] 2R_23339685_SNP [dm6]	T	C	9.296e^-6	0.328	INTERGENIC
3R	11887639	3R_11887639_SNP [dm3] 3R_16061917_SNP [dm6]	G	A	9.391e^-6	0.328	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	9.831e^-6	0.328	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	11889864	3R_11889864_SNP [dm3] 3R_16064142_SNP [dm6]	A	G	1.004e^-5	0.328	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
3R	11887627	3R_11887627_SNP [dm3] 3R_16061905_SNP [dm6]	G	A	1.015e^-5	0.328	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	1.039e^-5	0.328	INTRON Octbeta3R
3L	12458635	3L_12458635_SNP [dm3] 3L_12465535_SNP [dm6]	G	A	1.041e^-5	0.328	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	1.049e^-5	0.328	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10664770	3R_10664770_SNP [dm3] 3R_14839048_SNP [dm6]	C	T	1.050e^-5	0.328	INTRON btsz
X	4803855	X_4803855_DEL [dm3] X_4909822_DEL [dm6]	ATA	A	1.051e^-5	0.328	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10663528	3R_10663528_SNP [dm3] 3R_14837806_SNP [dm6]	C	T	1.052e^-5	0.328	INTRON btsz
X	6905223	X_6905223_SNP [dm3] X_7011190_SNP [dm6]	G	A	1.103e^-5	0.328	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1697095	2L_1697095_SNP [dm3] 2L_1697095_SNP [dm6]	A	G	1.131e^-5	0.328	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5482483	X_5482483_SNP [dm3] X_5588450_SNP [dm6]	G	T	1.163e^-5	0.328	INTERGENIC
X	5482484	X_5482484_SNP [dm3] X_5588451_SNP [dm6]	T	A	1.163e^-5	0.328	INTERGENIC
X	5482486	X_5482486_SNP [dm3] X_5588453_SNP [dm6]	T	C	1.163e^-5	0.328	INTERGENIC
3R	11945356	3R_11945356_SNP [dm3] 3R_16119634_SNP [dm6]	A	T	1.168e^-5	0.328	INTRON Sb
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	1.191e^-5	0.328	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14674740	2L_14674740_SNP [dm3] 2L_14674740_SNP [dm6]	A	T	1.198e^-5	0.328	INTRON osp
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	1.208e^-5	0.328	INTRON CG14877
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	1.267e^-5	0.34	SPLICE_SITE_REGION CG6293 INTRON CG6293
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	1.288e^-5	0.34	INTERGENIC
2L	10079962	2L_10079962_SNP [dm3] 2L_10079962_SNP [dm6]	T	A	1.334e^-5	0.348	INTRON CG44153	TF binding site mE1_TFBS_inv
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.390e^-5	0.353	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	1.400e^-5	0.353	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3L	12458544	3L_12458544_SNP [dm3] 3L_12465444_SNP [dm6]	G	T	1.450e^-5	0.353	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12458569	3L_12458569_SNP [dm3] 3L_12465469_SNP [dm6]	A	G	1.469e^-5	0.353	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12458571	3L_12458571_SNP [dm3] 3L_12465471_SNP [dm6]	A	T	1.469e^-5	0.353	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12458590	3L_12458590_DEL [dm3] 3L_12465490_DEL [dm6]	ACA	C	1.469e^-5	0.353	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	8031554	3R_8031554_SNP [dm3] 3R_12205832_SNP [dm6]	C	A	1.538e^-5	0.356	UPSTREAM tRNA:CR31356 INTERGENIC
2L	2656073	2L_2656073_SNP [dm3] 2L_2656073_SNP [dm6]	A	G	1.582e^-5	0.356	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	1.594e^-5	0.356	INTERGENIC
2R	20216261	2R_20216261_SNP [dm3] 2R_24328738_SNP [dm6]	C	G	1.599e^-5	0.356	UPSTREAM CR44810 INTRON CR44810
X	5724242	X_5724242_SNP [dm3] X_5830209_SNP [dm6]	G	C	1.618e^-5	0.356	INTRON CG15765
2L	14674849	2L_14674849_SNP [dm3] 2L_14674849_SNP [dm6]	C	T	1.635e^-5	0.356	INTRON osp
3R	11971180	3R_11971180_SNP [dm3] 3R_16145458_SNP [dm6]	G	T	1.655e^-5	0.356	UTR_3_PRIME CG5903 DOWNSTREAM CG5903 & 1 other	TF binding site mE1_TFBS_cad
3L	13908841	3L_13908841_SNP [dm3] 3L_13915741_SNP [dm6]	C	T	1.666e^-5	0.356	INTRON Rgl
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	1.670e^-5	0.356	INTERGENIC
3R	6538729	3R_6538729_SNP [dm3] 3R_10713007_SNP [dm6]	A	G	1.771e^-5	0.356	INTERGENIC
2L	2612179	2L_2612179_SNP [dm3] 2L_2612179_SNP [dm6]	T	C	1.780e^-5	0.356	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	1.792e^-5	0.356	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11293044	3L_11293044_SNP [dm3] 3L_11299944_SNP [dm6]	A	T	1.816e^-5	0.356	INTERGENIC
3L	15447645	3L_15447645_SNP [dm3] 3L_15454545_SNP [dm6]	C	A	1.818e^-5	0.356	INTERGENIC
3L	12458562	3L_12458562_SNP [dm3] 3L_12465462_SNP [dm6]	A	T	1.852e^-5	0.356	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12458585	3L_12458585_SNP [dm3] 3L_12465485_SNP [dm6]	T	A	1.852e^-5	0.356	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	12458596	3L_12458596_SNP [dm3] 3L_12465496_SNP [dm6]	C	T	1.852e^-5	0.356	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	12458604	3L_12458604_SNP [dm3] 3L_12465504_SNP [dm6]	G	T	1.852e^-5	0.356	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	1.864e^-5	0.356	INTRON tinc
3R	6573840	3R_6573840_SNP [dm3] 3R_10748118_SNP [dm6]	T	G	1.871e^-5	0.356	INTRON TkR86C
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	1.897e^-5	0.356	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	13655973	3R_13655973_SNP [dm3] 3R_17830251_SNP [dm6]	C	T	1.921e^-5	0.356	INTRON tinc
3R	6575358	3R_6575358_SNP [dm3] 3R_10749636_SNP [dm6]	C	A	1.930e^-5	0.356	INTRON TkR86C
3R	12032678	3R_12032678_SNP [dm3] 3R_16206956_SNP [dm6]	A	T	1.937e^-5	0.356	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11915742	3R_11915742_SNP [dm3] 3R_16090020_SNP [dm6]	G	A	1.961e^-5	0.357	INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	11861897	3R_11861897_SNP [dm3] 3R_16036175_SNP [dm6]	A	T	2.009e^-5	0.361	INTRON pnr
3R	12146172	3R_12146172_DEL [dm3] 3R_16320450_DEL [dm6]	AC	A	2.031e^-5	0.361	UPSTREAM tRNA:F2:89BC INTRON Sulf1
2L	11919167	2L_11919167_SNP [dm3] 2L_11919167_SNP [dm6]	A	C	2.040e^-5	0.361	INTRON Pde1c
3R	6573765	3R_6573765_SNP [dm3] 3R_10748043_SNP [dm6]	C	A	2.210e^-5	0.387	INTRON TkR86C
3R	11896937	3R_11896937_SNP [dm3] 3R_16071215_SNP [dm6]	T	C	2.244e^-5	0.389	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	2.261e^-5	0.389	DOWNSTREAM TkR86C INTERGENIC
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.321e^-5	0.389	DOWNSTREAM CG18109 INTERGENIC
2L	11919181	2L_11919181_SNP [dm3] 2L_11919181_SNP [dm6]	T	A	2.322e^-5	0.389	INTRON Pde1c
3R	11896391	3R_11896391_SNP [dm3] 3R_16070669_SNP [dm6]	A	G	2.352e^-5	0.389	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad
2L	16863957	2L_16863957_SNP [dm3] 2L_16863957_SNP [dm6]	A	C	2.361e^-5	0.389	INTERGENIC
3R	11457004	3R_11457004_SNP [dm3] 3R_15631282_SNP [dm6]	C	G	2.362e^-5	0.389	INTERGENIC
3R	11894023	3R_11894023_SNP [dm3] 3R_16068301_SNP [dm6]	A	G	2.396e^-5	0.391	UPSTREAM CG10185 DOWNSTREAM Mhcl INTERGENIC	TF binding site mE1_TFBS_cad
3L	12458606	3L_12458606_SNP [dm3] 3L_12465506_SNP [dm6]	A	C	2.439e^-5	0.392	INTRON eyg	TF binding site mE1_TFBS_chinmo
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	2.445e^-5	0.392	EXON CR43404
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	2.669e^-5	0.424	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11891214	3R_11891214_SNP [dm3] 3R_16065492_SNP [dm6]	A	T	2.754e^-5	0.431	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_cad
2L	5717510	2L_5717510_SNP [dm3] 2L_5717510_SNP [dm6]	G	A	2.785e^-5	0.431	NON_SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
3R	13655815	3R_13655815_SNP [dm3] 3R_17830093_SNP [dm6]	G	C	2.791e^-5	0.431	INTRON tinc
3R	11858064	3R_11858064_SNP [dm3] 3R_16032342_SNP [dm6]	C	T	2.907e^-5	0.431	INTRON pnr	TF binding site mE1_TFBS_inv
3R	11872705	3R_11872705_SNP [dm3] 3R_16046983_SNP [dm6]	T	C	2.907e^-5	0.431	SYNONYMOUS_CODING ird5 UPSTREAM CG10407
3R	11891068	3R_11891068_SNP [dm3] 3R_16065346_SNP [dm6]	T	A	2.937e^-5	0.431	INTRON CG10185	TF binding site mE1_TFBS_cad
3R	8782225	3R_8782225_SNP [dm3] 3R_12956503_SNP [dm6]	A	G	2.951e^-5	0.431	INTRON grsm
2R	19227185	2R_19227185_SNP [dm3] 2R_23339662_SNP [dm6]	A	G	2.955e^-5	0.431	INTERGENIC
2R	17190466	2R_17190466_SNP [dm3] 2R_21302961_SNP [dm6]	A	G	2.989e^-5	0.431	INTRON CG42672
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	2.991e^-5	0.431	DOWNSTREAM PpN58A INTRON Fili
2R	5046805	2R_5046805_SNP [dm3] 2R_9159300_SNP [dm6]	G	A	3.007e^-5	0.431	INTRON CG8008
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	3.017e^-5	0.431	INTRON TkR86C
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	3.029e^-5	0.431	INTERGENIC
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	3.032e^-5	0.431	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	3517893	3L_3517893_SNP [dm3] 3L_3517893_SNP [dm6]	G	C	3.075e^-5	0.431	INTRON Eip63E
3R	10139004	3R_10139004_SNP [dm3] 3R_14313282_SNP [dm6]	T	C	3.082e^-5	0.431	SYNONYMOUS_CODING CG31321
2R	19227184	2R_19227184_SNP [dm3] 2R_23339661_SNP [dm6]	C	A	3.128e^-5	0.435	INTERGENIC
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	3.152e^-5	0.435	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11885394	3R_11885394_SNP [dm3] 3R_16059672_SNP [dm6]	C	T	3.196e^-5	0.438	SYNONYMOUS_CODING msps DOWNSTREAM CG10185
3R	11945322	3R_11945322_SNP [dm3] 3R_16119600_SNP [dm6]	A	G	3.233e^-5	0.439	INTRON Sb
3R	10659189	3R_10659189_SNP [dm3] 3R_14833467_SNP [dm6]	C	T	3.252e^-5	0.439	INTRON btsz
3R	11900211	3R_11900211_SNP [dm3] 3R_16074489_SNP [dm6]	C	G	3.370e^-5	0.448	NON_SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12146557	3R_12146557_SNP [dm3] 3R_16320835_SNP [dm6]	T	A	3.370e^-5	0.448	UPSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	3.412e^-5	0.448	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	1176899	2L_1176899_SNP [dm3] 2L_1176899_SNP [dm6]	G	A	3.455e^-5	0.448	UPSTREAM CG4896 INTRON CG4887	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12458574	3L_12458574_DEL [dm3] 3L_12465474_DEL [dm6]	TGGA	T	3.462e^-5	0.448	INTRON eyg	TF binding site mE1_TFBS_chinmo
2L	4917163	2L_4917163_SNP [dm3] 2L_4917163_SNP [dm6]	T	A	3.475e^-5	0.448	INTRON hoe1
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	3.491e^-5	0.448	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
X	9597071	X_9597071_SNP [dm3] X_9703038_SNP [dm6]	G	A	3.551e^-5	0.449	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	15065650	3R_15065650_INS [dm3] 3R_19239928_INS [dm6]	T	TT	3.558e^-5	0.449	INTRON unc79
3R	11945407	3R_11945407_SNP [dm3] 3R_16119685_SNP [dm6]	T	A	3.566e^-5	0.449	INTRON Sb
2R	11887570	2R_11887570_SNP [dm3] 2R_16000065_SNP [dm6]	T	A	3.654e^-5	0.452	INTRON ATPCL
X	5724131	X_5724131_SNP [dm3] X_5830098_SNP [dm6]	T	G	3.677e^-5	0.452	INTRON CG15765
3R	11862816	3R_11862816_SNP [dm3] 3R_16037094_SNP [dm6]	T	A	3.689e^-5	0.452	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	3.699e^-5	0.452	INTRON Cad87A
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	3.722e^-5	0.452	INTERGENIC
X	2286485	X_2286485_SNP [dm3] X_2392452_SNP [dm6]	T	C	3.795e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11883181	3R_11883181_SNP [dm3] 3R_16057459_SNP [dm6]	G	T	3.835e^-5	0.452	INTRON msps
3R	19323454	3R_19323454_SNP [dm3] 3R_23497732_SNP [dm6]	T	C	3.867e^-5	0.452	INTERGENIC	TF binding site mE1_TFBS_inv
X	5404350	X_5404350_SNP [dm3] X_5510317_SNP [dm6]	C	T	3.868e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12458614	3L_12458614_SNP [dm3] 3L_12465514_SNP [dm6]	A	C	3.907e^-5	0.452	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	10686848	3R_10686848_SNP [dm3] 3R_14861126_SNP [dm6]	C	A	3.914e^-5	0.452	INTRON btsz
2R	19109678	2R_19109678_SNP [dm3] 2R_23222155_SNP [dm6]	G	A	3.929e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12160695	2R_12160695_SNP [dm3] 2R_16273190_SNP [dm6]	G	C	3.931e^-5	0.452	SYNONYMOUS_CODING CG33017	TF binding site mE1_TFBS_sens
X	4807883	X_4807883_SNP [dm3] X_4913850_SNP [dm6]	G	A	3.961e^-5	0.452	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11444395	3R_11444395_SNP [dm3] 3R_15618673_SNP [dm6]	C	T	3.980e^-5	0.452	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5404373	X_5404373_SNP [dm3] X_5510340_SNP [dm6]	A	T	3.981e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13252612	2L_13252612_SNP [dm3] 2L_13252612_SNP [dm6]	G	A	3.996e^-5	0.452	INTRON CG31728
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	4.043e^-5	0.454	INTRON dpr10
2R	10527361	2R_10527361_DEL [dm3] 2R_14639856_DEL [dm6]	ACTAATAATACCCCT...	A	4.138e^-5	0.462	DOWNSTREAM CG43236 & 2 others INTERGENIC	TF binding site mE1_TFBS_inv
3L	15042229	3L_15042229_DEL [dm3] 3L_15049129_DEL [dm6]	AA	A	4.202e^-5	0.466	DOWNSTREAM CG43678 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
3R	10663714	3R_10663714_SNP [dm3] 3R_14837992_SNP [dm6]	G	A	4.277e^-5	0.466	INTRON btsz
X	5121690	X_5121690_INS [dm3] X_5227657_INS [dm6]	C	CC	4.328e^-5	0.466	INTRON CG15465 & 1 other
3L	12458549	3L_12458549_SNP [dm3] 3L_12465449_SNP [dm6]	T	C	4.339e^-5	0.466	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	4.359e^-5	0.466	INTRON CG14692
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	4.382e^-5	0.466	UPSTREAM hoe1 INTRON hoe1
3L	12458565	3L_12458565_SNP [dm3] 3L_12465465_SNP [dm6]	T	A	4.413e^-5	0.466	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	11895123	3R_11895123_SNP [dm3] 3R_16069401_SNP [dm6]	T	A	4.448e^-5	0.466	DOWNSTREAM Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad
3R	11918886	3R_11918886_SNP [dm3] 3R_16093164_SNP [dm6]	A	T	4.456e^-5	0.466	NON_SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12458567	3L_12458567_SNP [dm3] 3L_12465467_SNP [dm6]	C	G	4.462e^-5	0.466	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	12389773	2R_12389773_SNP [dm3] 2R_16502268_SNP [dm6]	C	T	4.473e^-5	0.466	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3R	8775774	3R_8775774_SNP [dm3] 3R_12950052_SNP [dm6]	C	G	4.524e^-5	0.466	UTR_3_PRIME grsm
3L	13290636	3L_13290636_SNP [dm3] 3L_13297536_SNP [dm6]	T	C	4.568e^-5	0.466	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 EXON CR45253
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	4.570e^-5	0.466	UPSTREAM CG3306 & 1 other INTERGENIC
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	4.590e^-5	0.466	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3L	11813289	3L_11813289_SNP [dm3] 3L_11820189_SNP [dm6]	A	T	4.664e^-5	0.466	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	2612143	2L_2612143_SNP [dm3] 2L_2612143_SNP [dm6]	C	G	4.696e^-5	0.466	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6582569	3R_6582569_SNP [dm3] 3R_10756847_SNP [dm6]	A	T	4.701e^-5	0.466	SYNONYMOUS_CODING CG31272 EXON CR45015
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	4.757e^-5	0.466	SYNONYMOUS_CODING CG30344
3R	11862813	3R_11862813_SNP [dm3] 3R_16037091_SNP [dm6]	T	A	4.784e^-5	0.466	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	12146124	3R_12146124_INS [dm3] 3R_16320402_INS [dm6]	G	GCTCTG	4.853e^-5	0.466	UPSTREAM tRNA:F2:89BC INTRON Sulf1
2R	3041181	2R_3041181_SNP [dm3] 2R_7153676_SNP [dm6]	T	C	4.901e^-5	0.466	UPSTREAM Spn43Ab DOWNSTREAM Spn43Ad INTRON pk
2L	10565851	2L_10565851_SNP [dm3] 2L_10565851_SNP [dm6]	G	T	4.933e^-5	0.466	INTRON Trim9
3R	24947353	3R_24947353_SNP [dm3] 3R_29121631_SNP [dm6]	G	T	4.953e^-5	0.466	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9956630	2R_9956630_SNP [dm3] 2R_14069125_SNP [dm6]	G	C	5.049e^-5	0.466	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6981766	3L_6981766_SNP [dm3] 3L_6988666_SNP [dm6]	C	T	5.097e^-5	0.466	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3196086	2L_3196086_SNP [dm3] 2L_3196086_SNP [dm6]	G	A	5.104e^-5	0.466	INTRON CG34393
3R	12132369	3R_12132369_SNP [dm3] 3R_16306647_SNP [dm6]	C	T	5.172e^-5	0.466	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3038378	2R_3038378_SNP [dm3] 2R_7150873_SNP [dm6]	G	T	5.176e^-5	0.466	UTR_5_PRIME pk DOWNSTREAM CR44200 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11908034	3R_11908034_SNP [dm3] 3R_16082312_SNP [dm6]	T	C	5.188e^-5	0.466	INTRON Mhcl
3L	3470254	3L_3470254_DEL [dm3] 3L_3470254_DEL [dm6]	TT	T	5.222e^-5	0.466	INTRON CG14971
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	5.252e^-5	0.466	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12347791	3L_12347791_SNP [dm3] 3L_12354691_SNP [dm6]	C	T	5.265e^-5	0.466	INTERGENIC
2L	13371657	2L_13371657_SNP [dm3] 2L_13371657_SNP [dm6]	A	G	5.284e^-5	0.466	SYNONYMOUS_CODING CG9305 UPSTREAM CG9306	TF binding site mE1_TFBS_cad
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	5.285e^-5	0.466	SYNONYMOUS_CODING CG6282
X	5482435	X_5482435_SNP [dm3] X_5588402_SNP [dm6]	C	T	5.343e^-5	0.466	INTERGENIC
3L	14441403	3L_14441403_SNP [dm3] 3L_14448303_SNP [dm6]	A	G	5.353e^-5	0.466	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	5.373e^-5	0.466	INTRON Octbeta3R
3R	20855685	3R_20855685_SNP [dm3] 3R_25029963_SNP [dm6]	T	C	5.375e^-5	0.466	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
X	4807254	X_4807254_SNP [dm3] X_4913221_SNP [dm6]	C	T	5.399e^-5	0.466	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11895771	3R_11895771_SNP [dm3] 3R_16070049_SNP [dm6]	A	G	5.416e^-5	0.466	INTRON Mhcl	TF binding site mE1_TFBS_cad
3L	12458612	3L_12458612_SNP [dm3] 3L_12465512_SNP [dm6]	G	A	5.489e^-5	0.466	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	8651610	3R_8651610_DEL [dm3] 3R_12825888_DEL [dm6]	TCGAAATCGCCGGCAGACGT...	T	5.508e^-5	0.466	INTERGENIC
X	4815227	X_4815227_SNP [dm3] X_4921194_SNP [dm6]	T	C	5.514e^-5	0.466	SYNONYMOUS_CODING CG6903 DOWNSTREAM CG44774	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11945349	3R_11945349_SNP [dm3] 3R_16119627_SNP [dm6]	A	G	5.531e^-5	0.466	INTRON Sb
2L	10565857	2L_10565857_SNP [dm3] 2L_10565857_SNP [dm6]	A	C	5.559e^-5	0.466	INTRON Trim9
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	5.559e^-5	0.466	UPSTREAM CG17292 INTRON CG17292
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	5.569e^-5	0.466	INTRON Eip63E
3L	12462225	3L_12462225_SNP [dm3] 3L_12469125_SNP [dm6]	C	A	5.639e^-5	0.466	UTR_3_PRIME CG32102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2R	13119498	2R_13119498_SNP [dm3] 2R_17231993_SNP [dm6]	C	T	5.651e^-5	0.466	INTRON mbl
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	5.668e^-5	0.466	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	5.694e^-5	0.466	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11862811	3R_11862811_INS [dm3] 3R_16037089_INS [dm6]	A	AAGTTCA	5.695e^-5	0.466	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	6289143	3R_6289143_INS [dm3] 3R_10463421_INS [dm6]	T	CA	5.704e^-5	0.466	EXON CR44955
3R	6968593	3R_6968593_SNP [dm3] 3R_11142871_SNP [dm6]	G	A	5.735e^-5	0.466	INTERGENIC
3R	8532736	3R_8532736_SNP [dm3] 3R_12707014_SNP [dm6]	A	T	5.742e^-5	0.466	SPLICE_SITE_REGION mus308 INTRON mus308	TF binding site mE1_TFBS_cad
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	5.769e^-5	0.466	INTRON klar
X	14542870	X_14542870_SNP [dm3] X_14648837_SNP [dm6]	C	T	5.770e^-5	0.466	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	18608810	2R_18608810_SNP [dm3] 2R_22721305_SNP [dm6]	A	G	5.773e^-5	0.466	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11954362	3R_11954362_SNP [dm3] 3R_16128640_SNP [dm6]	C	T	5.794e^-5	0.466	UPSTREAM Sb INTRON Sb
3R	11879319	3R_11879319_SNP [dm3] 3R_16053597_SNP [dm6]	C	T	5.813e^-5	0.466	SYNONYMOUS_CODING msps
2L	9364937	2L_9364937_SNP [dm3] 2L_9364937_SNP [dm6]	C	A	5.820e^-5	0.466	EXON CR43404
3R	11884765	3R_11884765_SNP [dm3] 3R_16059043_SNP [dm6]	C	T	5.830e^-5	0.466	SYNONYMOUS_CODING msps
2R	18455221	2R_18455221_SNP [dm3] 2R_22567716_SNP [dm6]	A	G	5.831e^-5	0.466	INTRON dnr1
3R	11895136	3R_11895136_SNP [dm3] 3R_16069414_SNP [dm6]	G	T	5.834e^-5	0.466	DOWNSTREAM Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	5.856e^-5	0.466	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	5482478	X_5482478_SNP [dm3] X_5588445_SNP [dm6]	G	T	5.899e^-5	0.466	INTERGENIC
2R	19109672	2R_19109672_SNP [dm3] 2R_23222149_SNP [dm6]	G	T	5.921e^-5	0.466	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12137320	2R_12137320_SNP [dm3] 2R_16249815_SNP [dm6]	G	C	5.961e^-5	0.466	UPSTREAM CngA INTRON CngA
3R	25645397	3R_25645397_SNP [dm3] 3R_29819675_SNP [dm6]	T	C	5.984e^-5	0.466	INTRON neo	TF binding site mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Trl
3L	12347764	3L_12347764_SNP [dm3] 3L_12354664_SNP [dm6]	T	G	5.993e^-5	0.466	INTERGENIC
3R	11891043	3R_11891043_SNP [dm3] 3R_16065321_SNP [dm6]	A	G	6.003e^-5	0.466	INTRON CG10185	TF binding site mE1_TFBS_cad
3R	19232059	3R_19232059_SNP [dm3] 3R_23406337_SNP [dm6]	A	G	6.083e^-5	0.466	SYNONYMOUS_CODING Ir94e
3L	5327578	3L_5327578_DEL [dm3] 3L_5334478_DEL [dm6]	GG	G	6.083e^-5	0.466	UPSTREAM CR45742 INTERGENIC
3R	11879683	3R_11879683_SNP [dm3] 3R_16053961_SNP [dm6]	G	A	6.128e^-5	0.466	NON_SYNONYMOUS_CODING msps	TF binding site BDTNP1_TFBS_bcd
3L	10452371	3L_10452371_SNP [dm3] 3L_10459271_SNP [dm6]	C	G	6.155e^-5	0.466	UTR_3_PRIME Gem3 DOWNSTREAM Gem3
X	15875579	X_15875579_SNP [dm3] X_15981546_SNP [dm6]	C	T	6.235e^-5	0.466	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3031816	2R_3031816_SNP [dm3] 2R_7144311_SNP [dm6]	C	A	6.242e^-5	0.466	INTERGENIC
2R	7066309	2R_7066309_SNP [dm3] 2R_11178804_SNP [dm6]	T	C	6.288e^-5	0.466	INTRON shn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	6.319e^-5	0.466	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
X	3326458	X_3326458_SNP [dm3] X_3432425_SNP [dm6]	T	A	6.380e^-5	0.466	INTRON CR44999 & 1 other
3R	6273672	3R_6273672_SNP [dm3] 3R_10447950_SNP [dm6]	A	C	6.384e^-5	0.466	INTERGENIC
3R	11454179	3R_11454179_SNP [dm3] 3R_15628457_SNP [dm6]	G	C	6.401e^-5	0.466	INTERGENIC
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	6.439e^-5	0.466	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
X	3010519	X_3010519_INS [dm3] X_3116486_INS [dm6]	G	GTG	6.484e^-5	0.466	INTRON kirre
3R	10838982	3R_10838982_DEL [dm3] 3R_15013260_DEL [dm6]	CC	C	6.506e^-5	0.466	INTERGENIC
3R	10622491	3R_10622491_SNP [dm3] 3R_14796769_SNP [dm6]	T	G	6.522e^-5	0.466	SYNONYMOUS_CODING CG14855 DOWNSTREAM jvl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18830026	3L_18830026_SNP [dm3] 3L_18836926_SNP [dm6]	A	T	6.529e^-5	0.466	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6646529	2R_6646529_SNP [dm3] 2R_10759024_SNP [dm6]	T	C	6.529e^-5	0.466	INTRON CG33144
3R	8418088	3R_8418088_SNP [dm3] 3R_12592366_SNP [dm6]	G	C	6.537e^-5	0.466	INTRON Octbeta2R
3R	8795991	3R_8795991_SNP [dm3] 3R_12970269_SNP [dm6]	G	A	6.538e^-5	0.466	INTRON CG7381	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5036111	2R_5036111_SNP [dm3] 2R_9148606_SNP [dm6]	G	C	6.545e^-5	0.466	UPSTREAM CG30345 DOWNSTREAM CG30344 INTERGENIC
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	6.559e^-5	0.466	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	6.586e^-5	0.466	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	6.589e^-5	0.466	INTRON sNPF
3R	11252588	3R_11252588_SNP [dm3] 3R_15426866_SNP [dm6]	C	T	6.601e^-5	0.466	UTR_5_PRIME CG6118 INTRON CG6118
3R	9714683	3R_9714683_SNP [dm3] 3R_13888961_SNP [dm6]	C	A	6.618e^-5	0.466	INTERGENIC
3R	11903736	3R_11903736_SNP [dm3] 3R_16078014_SNP [dm6]	A	T	6.620e^-5	0.466	DOWNSTREAM CG32855 INTRON Mhcl
2L	10169186	2L_10169186_SNP [dm3] 2L_10169186_SNP [dm6]	G	A	6.645e^-5	0.466	INTRON CG44153
3R	13618618	3R_13618618_SNP [dm3] 3R_17792896_SNP [dm6]	C	A	6.652e^-5	0.466	INTRON CG43102
3R	11905128	3R_11905128_SNP [dm3] 3R_16079406_SNP [dm6]	C	T	6.724e^-5	0.469	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	6.765e^-5	0.47	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	6.800e^-5	0.471	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3R	10634074	3R_10634074_SNP [dm3] 3R_14808352_SNP [dm6]	A	T	6.850e^-5	0.472	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8750335	2L_8750335_SNP [dm3] 2L_8750335_SNP [dm6]	T	A	6.896e^-5	0.472	INTERGENIC
3L	5950110	3L_5950110_INS [dm3] 3L_5957010_INS [dm6]	T	TT	6.901e^-5	0.472	INTERGENIC
3R	8782490	3R_8782490_SNP [dm3] 3R_12956768_SNP [dm6]	A	T	6.947e^-5	0.473	INTRON grsm
3R	11885352	3R_11885352_SNP [dm3] 3R_16059630_SNP [dm6]	G	A	6.976e^-5	0.473	SYNONYMOUS_CODING msps DOWNSTREAM CG10185
3R	12132497	3R_12132497_SNP [dm3] 3R_16306775_SNP [dm6]	C	A	6.979e^-5	0.473	NON_SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11444283	3R_11444283_SNP [dm3] 3R_15618561_SNP [dm6]	A	T	7.006e^-5	0.473	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	7.100e^-5	0.474	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3R	20115330	3R_20115330_SNP [dm3] 3R_24289608_SNP [dm6]	G	A	7.139e^-5	0.474	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20115336	3R_20115336_SNP [dm3] 3R_24289614_SNP [dm6]	G	C	7.139e^-5	0.474	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7745307	3R_7745307_SNP [dm3] 3R_11919585_SNP [dm6]	T	C	7.145e^-5	0.474	INTRON Cad87A
2R	5048966	2R_5048966_SNP [dm3] 2R_9161461_SNP [dm6]	T	A	7.171e^-5	0.474	UPSTREAM CR44283 & 1 other DOWNSTREAM CG8046 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22312531	3R_22312531_SNP [dm3] 3R_26486809_SNP [dm6]	T	C	7.185e^-5	0.474	INTRON plum
3L	6733221	3L_6733221_SNP [dm3] 3L_6740121_SNP [dm6]	T	G	7.207e^-5	0.474	DOWNSTREAM dikar INTRON dikar
3R	7715858	3R_7715858_SNP [dm3] 3R_11890136_SNP [dm6]	G	C	7.350e^-5	0.479	SPLICE_SITE_REGION CG31368 INTRON CG31368
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	7.392e^-5	0.479	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2833272	3L_2833272_INS [dm3] 3L_2833272_INS [dm6]	G	GTACGG	7.422e^-5	0.479	INTRON CG43444
X	6626063	X_6626063_SNP [dm3] X_6732030_SNP [dm6]	C	T	7.438e^-5	0.479	UPSTREAM CR43461 INTRON CG3168	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	6565983	3R_6565983_SNP [dm3] 3R_10740261_SNP [dm6]	T	A	7.530e^-5	0.479	INTRON TkR86C
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	7.614e^-5	0.479	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3R	8810453	3R_8810453_SNP [dm3] 3R_12984731_SNP [dm6]	C	A	7.623e^-5	0.479	UTR_3_PRIME Paip2 DOWNSTREAM Paip2
3R	10660344	3R_10660344_SNP [dm3] 3R_14834622_SNP [dm6]	T	A	7.640e^-5	0.479	INTRON btsz
2R	5026100	2R_5026100_SNP [dm3] 2R_9138595_SNP [dm6]	T	C	7.735e^-5	0.479	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10656435	3R_10656435_SNP [dm3] 3R_14830713_SNP [dm6]	G	A	7.738e^-5	0.479	INTRON btsz
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	7.747e^-5	0.479	UPSTREAM CG3306 & 1 other INTERGENIC
3R	10661322	3R_10661322_SNP [dm3] 3R_14835600_SNP [dm6]	G	A	7.767e^-5	0.479	INTRON btsz
3R	9693884	3R_9693884_SNP [dm3] 3R_13868162_SNP [dm6]	G	A	7.768e^-5	0.479	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14674945	2L_14674945_SNP [dm3] 2L_14674945_SNP [dm6]	G	A	7.775e^-5	0.479	INTRON osp
2L	16582252	2L_16582252_SNP [dm3] 2L_16582252_SNP [dm6]	G	C	7.797e^-5	0.479	INTRON CG42389	TF binding site mE1_TFBS_bab1
3R	10663734	3R_10663734_SNP [dm3] 3R_14838012_SNP [dm6]	G	A	7.812e^-5	0.479	INTRON btsz
2R	16523963	2R_16523963_SNP [dm3] 2R_20636458_SNP [dm6]	T	A	7.821e^-5	0.479	UTR_5_PRIME CG13436 INTRON rig
2R	16915602	2R_16915602_SNP [dm3] 2R_21028097_SNP [dm6]	C	T	7.837e^-5	0.479	INTERGENIC
3L	11586360	3L_11586360_SNP [dm3] 3L_11593260_SNP [dm6]	A	G	7.960e^-5	0.479	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
3L	3260995	3L_3260995_SNP [dm3] 3L_3260995_SNP [dm6]	C	T	7.974e^-5	0.479	INTRON ckd
2R	19502483	2R_19502483_SNP [dm3] 2R_23614960_SNP [dm6]	A	G	7.996e^-5	0.479	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	11895216	3R_11895216_SNP [dm3] 3R_16069494_SNP [dm6]	T	A	8.013e^-5	0.479	DOWNSTREAM Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad
3R	20718349	3R_20718349_SNP [dm3] 3R_24892627_SNP [dm6]	G	A	8.032e^-5	0.479	UPSTREAM CG31121 INTRON CG31121
3R	10660974	3R_10660974_SNP [dm3] 3R_14835252_SNP [dm6]	T	G	8.036e^-5	0.479	INTRON btsz
3R	11895322	3R_11895322_SNP [dm3] 3R_16069600_SNP [dm6]	G	A	8.043e^-5	0.479	DOWNSTREAM Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad
2R	10404286	2R_10404286_SNP [dm3] 2R_14516781_SNP [dm6]	G	A	8.051e^-5	0.479	INTERGENIC
3R	24721958	3R_24721958_SNP [dm3] 3R_28896236_SNP [dm6]	C	G	8.059e^-5	0.479	INTRON Doa
3R	6569164	3R_6569164_SNP [dm3] 3R_10743442_SNP [dm6]	C	T	8.069e^-5	0.479	INTRON TkR86C
3R	12145560	3R_12145560_SNP [dm3] 3R_16319838_SNP [dm6]	A	C	8.096e^-5	0.479	INTRON Sulf1
3R	9379087	3R_9379087_SNP [dm3] 3R_13553365_SNP [dm6]	C	A	8.110e^-5	0.479	INTERGENIC
2R	18042586	2R_18042586_SNP [dm3] 2R_22155081_SNP [dm6]	G	A	8.111e^-5	0.479	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	1336414	2R_1336414_SNP [dm3] 2R_5448909_SNP [dm6]	C	T	8.121e^-5	0.479	DOWNSTREAM laccase2 INTRON laccase2	transposable element FlyBase
3R	6484716	3R_6484716_SNP [dm3] 3R_10658994_SNP [dm6]	G	A	8.217e^-5	0.479	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	8.250e^-5	0.479	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3393481	3L_3393481_SNP [dm3] 3L_3393481_SNP [dm6]	G	A	8.266e^-5	0.479	UPSTREAM CR45737 INTERGENIC
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	8.277e^-5	0.479	INTRON ckd
3R	20855692	3R_20855692_SNP [dm3] 3R_25029970_SNP [dm6]	G	T	8.320e^-5	0.479	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
X	2239200	X_2239200_SNP [dm3] X_2345167_SNP [dm6]	G	A	8.323e^-5	0.479	UTR_3_PRIME ptr UPSTREAM mRpL14 DOWNSTREAM ptr	TF binding site BDTNP1_TFBS_Med
3L	9283258	3L_9283258_SNP [dm3] 3L_9290158_SNP [dm6]	A	T	8.336e^-5	0.479	INTERGENIC
3L	9283265	3L_9283265_DEL [dm3] 3L_9290165_DEL [dm6]	CTGA	C	8.336e^-5	0.479	INTERGENIC
2R	20216608	2R_20216608_SNP [dm3] 2R_24329085_SNP [dm6]	A	C	8.374e^-5	0.479	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
2L	5677243	2L_5677243_SNP [dm3] 2L_5677243_SNP [dm6]	A	G	8.399e^-5	0.479	INTERGENIC
3R	20116292	3R_20116292_SNP [dm3] 3R_24290570_SNP [dm6]	A	G	8.458e^-5	0.479	NON_SYNONYMOUS_CODING CG6364 UPSTREAM CG34290	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	8.467e^-5	0.479	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6578617	3R_6578617_INS [dm3] 3R_10752895_INS [dm6]	A	AGCCAG	8.477e^-5	0.479	DOWNSTREAM CG14691 INTERGENIC	regulatory region REDfly_CRMs
X	19225044	X_19225044_SNP [dm3] X_19331011_SNP [dm6]	A	T	8.477e^-5	0.479	INTRON nAChRalpha7
X	19225049	X_19225049_SNP [dm3] X_19331016_SNP [dm6]	A	T	8.477e^-5	0.479	INTRON nAChRalpha7
2R	12810421	2R_12810421_SNP [dm3] 2R_16922916_SNP [dm6]	T	A	8.512e^-5	0.479	INTERGENIC
3R	17481292	3R_17481292_SNP [dm3] 3R_21655570_SNP [dm6]	A	T	8.526e^-5	0.479	INTRON E2f	TF binding site BDTNP1_TFBS_da
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	8.554e^-5	0.479	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2L	560125	2L_560125_SNP [dm3] 2L_560125_SNP [dm6]	C	T	8.586e^-5	0.479	NON_SYNONYMOUS_CODING CG2789 UTR_5_PRIME rempA DOWNSTREAM CG11835	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10457515	3R_10457515_SNP [dm3] 3R_14631793_SNP [dm6]	C	T	8.666e^-5	0.481	INTRON CG7886 & 1 other
2R	10950684	2R_10950684_SNP [dm3] 2R_15063179_SNP [dm6]	G	A	8.696e^-5	0.481	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	8.716e^-5	0.481	INTRON CadN
2R	11887636	2R_11887636_SNP [dm3] 2R_16000131_SNP [dm6]	T	A	8.722e^-5	0.481	UTR_5_PRIME ATPCL INTRON ATPCL	TF binding site BDTNP1_TFBS_z
3R	11898155	3R_11898155_SNP [dm3] 3R_16072433_SNP [dm6]	C	T	8.736e^-5	0.481	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11904318	3R_11904318_SNP [dm3] 3R_16078596_SNP [dm6]	G	A	8.773e^-5	0.481	DOWNSTREAM CG32855 INTRON Mhcl
3R	8807786	3R_8807786_SNP [dm3] 3R_12982064_SNP [dm6]	C	T	8.817e^-5	0.482	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11894164	3R_11894164_SNP [dm3] 3R_16068442_SNP [dm6]	T	C	8.843e^-5	0.482	UPSTREAM CG10185 DOWNSTREAM Mhcl INTERGENIC
2L	19897953	2L_19897953_SNP [dm3] 2L_19897953_SNP [dm6]	T	C	8.917e^-5	0.483	INTRON sick
3L	12464869	3L_12464869_SNP [dm3] 3L_12471769_SNP [dm6]	A	T	8.917e^-5	0.483	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	3880414	2L_3880414_SNP [dm3] 2L_3880414_SNP [dm6]	A	G	8.948e^-5	0.483	UPSTREAM capu INTRON capu
2R	12810415	2R_12810415_SNP [dm3] 2R_16922910_SNP [dm6]	T	C	8.988e^-5	0.483	INTERGENIC
3L	13290743	3L_13290743_SNP [dm3] 3L_13297643_SNP [dm6]	A	T	8.994e^-5	0.483	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 & 1 other INTERGENIC
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	9.067e^-5	0.484	INTRON capu	TF binding site mE1_TFBS_bab1
2R	17151972	2R_17151972_SNP [dm3] 2R_21264467_SNP [dm6]	C	T	9.075e^-5	0.484	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3R	6970285	3R_6970285_SNP [dm3] 3R_11144563_SNP [dm6]	G	A	9.107e^-5	0.484	SYNONYMOUS_CODING CheA86a
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	9.159e^-5	0.484	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	14518099	2R_14518099_SNP [dm3] 2R_18630594_SNP [dm6]	G	A	9.161e^-5	0.484	INTRON CG5482
2R	9896969	2R_9896969_SNP [dm3] 2R_14009464_SNP [dm6]	C	T	9.214e^-5	0.484	UTR_5_PRIME mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	3345019	2R_3345019_SNP [dm3] 2R_7457514_SNP [dm6]	T	G	9.215e^-5	0.484	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	9.275e^-5	0.484	INTRON Octbeta2R
2R	3344958	2R_3344958_INS [dm3] 2R_7457453_INS [dm6]	A	ATGATGATGATTGC...	9.288e^-5	0.484	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12458594	3L_12458594_SNP [dm3] 3L_12465494_SNP [dm6]	A	G	9.298e^-5	0.484	INTRON eyg	TF binding site mE1_TFBS_chinmo
X	7778980	X_7778980_SNP [dm3] X_7884947_SNP [dm6]	T	A	9.307e^-5	0.484	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
2R	19455945	2R_19455945_SNP [dm3] 2R_23568422_SNP [dm6]	A	G	9.308e^-5	0.484	INTRON apt
2L	6274008	2L_6274008_SNP [dm3] 2L_6274008_SNP [dm6]	G	A	9.400e^-5	0.486	INTRON Ddr
3R	11416243	3R_11416243_SNP [dm3] 3R_15590521_SNP [dm6]	G	A	9.412e^-5	0.486	INTERGENIC
3R	7751030	3R_7751030_SNP [dm3] 3R_11925308_SNP [dm6]	T	A	9.516e^-5	0.486	INTRON Cad87A
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	9.542e^-5	0.486	INTERGENIC
2L	14674970	2L_14674970_SNP [dm3] 2L_14674970_SNP [dm6]	C	T	9.628e^-5	0.486	INTRON osp
X	4804438	X_4804438_DEL [dm3] X_4910405_DEL [dm6]	TTT	T	9.681e^-5	0.486	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	9.702e^-5	0.486	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	3812740	2R_3812740_SNP [dm3] 2R_7925235_SNP [dm6]	A	T	9.715e^-5	0.486	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	3812741	2R_3812741_SNP [dm3] 2R_7925236_SNP [dm6]	T	A	9.715e^-5	0.486	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	27081739	3R_27081739_SNP [dm3] 3R_31256017_SNP [dm6]	G	A	9.747e^-5	0.486	INTRON spn-F	TF binding site mE1_TFBS_cad
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	9.770e^-5	0.486	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11813299	3L_11813299_SNP [dm3] 3L_11820199_SNP [dm6]	A	C	9.789e^-5	0.486	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	4805130	X_4805130_SNP [dm3] X_4911097_SNP [dm6]	G	T	9.854e^-5	0.486	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	9.860e^-5	0.486	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10634088	3R_10634088_SNP [dm3] 3R_14808366_SNP [dm6]	A	C	9.882e^-5	0.486	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6565501	3R_6565501_SNP [dm3] 3R_10739779_SNP [dm6]	T	C	9.884e^-5	0.486	INTRON TkR86C	TF binding site BDTNP1_TFBS_sna
3R	7748925	3R_7748925_SNP [dm3] 3R_11923203_SNP [dm6]	G	A	9.939e^-5	0.486	INTRON Cad87A
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	1.001e^-4	0.486	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
3R	11902160	3R_11902160_SNP [dm3] 3R_16076438_SNP [dm6]	C	G	1.003e^-4	0.486	UPSTREAM Mhcl INTRON Mhcl
3R	6563404	3R_6563404_SNP [dm3] 3R_10737682_SNP [dm6]	G	A	1.004e^-4	0.486	UTR_3_PRIME TkR86C
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	1.006e^-4	0.486	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	1113623	3R_1113623_SNP [dm3] 3R_5287901_SNP [dm6]	G	A	1.014e^-4	0.486	UPSTREAM mtd INTRON mtd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3029299	3L_3029299_SNP [dm3] 3L_3029299_SNP [dm6]	T	C	1.015e^-4	0.486	INTERGENIC
2R	14518104	2R_14518104_SNP [dm3] 2R_18630599_SNP [dm6]	A	G	1.018e^-4	0.486	INTRON CG5482
3R	4667510	3R_4667510_SNP [dm3] 3R_8841788_SNP [dm6]	T	A	1.022e^-4	0.486	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11894126	3R_11894126_SNP [dm3] 3R_16068404_SNP [dm6]	G	A	1.023e^-4	0.486	UPSTREAM CG10185 DOWNSTREAM Mhcl INTERGENIC	TF binding site mE1_TFBS_cad
3R	22437609	3R_22437609_SNP [dm3] 3R_26611887_SNP [dm6]	T	C	1.028e^-4	0.486	INTERGENIC
2L	14674902	2L_14674902_SNP [dm3] 2L_14674902_SNP [dm6]	C	T	1.030e^-4	0.486	INTRON osp
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	1.032e^-4	0.486	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2286495	X_2286495_SNP [dm3] X_2392462_SNP [dm6]	C	T	1.037e^-4	0.486	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15181225	X_15181225_SNP [dm3] X_15287192_SNP [dm6]	C	A	1.038e^-4	0.486	INTERGENIC
2L	2612175	2L_2612175_SNP [dm3] 2L_2612175_SNP [dm6]	C	G	1.042e^-4	0.486	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19370225	X_19370225_SNP [dm3] X_19476192_SNP [dm6]	C	A	1.042e^-4	0.486	NON_SYNONYMOUS_CODING CG32533 DOWNSTREAM CG12200
3R	6959170	3R_6959170_SNP [dm3] 3R_11133448_SNP [dm6]	C	T	1.048e^-4	0.486	INTERGENIC
3R	17955964	3R_17955964_SNP [dm3] 3R_22130242_SNP [dm6]	T	C	1.051e^-4	0.486	SYNONYMOUS_CODING CG42390
2L	8621264	2L_8621264_INS [dm3] 2L_8621264_INS [dm6]	T	TG	1.051e^-4	0.486	INTRON Sema-1a
3L	9089537	3L_9089537_SNP [dm3] 3L_9096437_SNP [dm6]	T	C	1.054e^-4	0.486	UPSTREAM CG13315 INTERGENIC
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	1.055e^-4	0.486	INTRON 4EHP
3L	11813270	3L_11813270_SNP [dm3] 3L_11820170_SNP [dm6]	C	T	1.055e^-4	0.486	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	8377256	2R_8377256_SNP [dm3] 2R_12489751_SNP [dm6]	A	G	1.060e^-4	0.486	SYNONYMOUS_CODING fdl
2L	2165423	2L_2165423_SNP [dm3] 2L_2165423_SNP [dm6]	T	C	1.061e^-4	0.486	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	5718112	2L_5718112_SNP [dm3] 2L_5718112_SNP [dm6]	T	A	1.063e^-4	0.486	DOWNSTREAM CG11149 & 1 other INTERGENIC
3L	1262393	3L_1262393_SNP [dm3] 3L_1262393_SNP [dm6]	G	A	1.064e^-4	0.486	INTRON CG9134
3R	7712533	3R_7712533_SNP [dm3] 3R_11886811_SNP [dm6]	G	T	1.070e^-4	0.486	NON_SYNONYMOUS_CODING mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10008772	2R_10008772_SNP [dm3] 2R_14121267_SNP [dm6]	A	G	1.071e^-4	0.486	INTRON Prosap	TF binding site mE1_TFBS_HSA
3L	6571996	3L_6571996_SNP [dm3] 3L_6578896_SNP [dm6]	C	T	1.072e^-4	0.486	INTRON CG18769 & 1 other
X	14681238	X_14681238_SNP [dm3] X_14787205_SNP [dm6]	A	C	1.074e^-4	0.486	UPSTREAM Ag5r DOWNSTREAM rut EXON CR45522
2L	15734502	2L_15734502_SNP [dm3] 2L_15734502_SNP [dm6]	T	C	1.075e^-4	0.486	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	20332393	2R_20332393_SNP [dm3] 2R_24444870_SNP [dm6]	C	A	1.078e^-4	0.486	UPSTREAM CG3483 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	1.083e^-4	0.486	INTRON CG42663
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	1.085e^-4	0.486	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	7081082	3R_7081082_SNP [dm3] 3R_11255360_SNP [dm6]	A	C	1.086e^-4	0.486	INTRON CR43283	TF binding site mE1_TFBS_Trl
3R	7771152	3R_7771152_DEL [dm3] 3R_11945430_DEL [dm6]	ATGGGGTTATTGGACGGTGG...	A	1.086e^-4	0.486	INTRON Cad87A
3R	8808049	3R_8808049_DEL [dm3] 3R_12982327_DEL [dm6]	CGT	C	1.091e^-4	0.486	INTRON Paip2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	13119500	2R_13119500_SNP [dm3] 2R_17231995_SNP [dm6]	G	C	1.093e^-4	0.486	INTRON mbl
3R	7745335	3R_7745335_SNP [dm3] 3R_11919613_SNP [dm6]	A	T	1.095e^-4	0.486	INTRON Cad87A
3R	14997364	3R_14997364_SNP [dm3] 3R_19171642_SNP [dm6]	A	T	1.098e^-4	0.486	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3068588	2R_3068588_SNP [dm3] 2R_7181083_SNP [dm6]	G	A	1.098e^-4	0.486	UPSTREAM CG30385 DOWNSTREAM CG33140 INTRON pk
3L	6733219	3L_6733219_SNP [dm3] 3L_6740119_SNP [dm6]	A	G	1.106e^-4	0.486	DOWNSTREAM dikar INTRON dikar
3R	13636077	3R_13636077_SNP [dm3] 3R_17810355_SNP [dm6]	C	T	1.108e^-4	0.486	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7803563	X_7803563_SNP [dm3] X_7909530_SNP [dm6]	G	A	1.111e^-4	0.486	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
2L	4910823	2L_4910823_SNP [dm3] 2L_4910823_SNP [dm6]	A	G	1.114e^-4	0.486	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9148234	2R_9148234_SNP [dm3] 2R_13260729_SNP [dm6]	C	T	1.115e^-4	0.486	SYNONYMOUS_CODING CG42319
2L	1188741	2L_1188741_SNP [dm3] 2L_1188741_SNP [dm6]	A	T	1.117e^-4	0.486	INTRON CG5001
3R	6283545	3R_6283545_DEL [dm3] 3R_10457823_DEL [dm6]	GC	G	1.119e^-4	0.486	INTERGENIC
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	1.119e^-4	0.486	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	16018433	2R_16018433_SNP [dm3] 2R_20130928_SNP [dm6]	A	G	1.120e^-4	0.486	INTERGENIC
3L	11252014	3L_11252014_DEL [dm3] 3L_11258914_DEL [dm6]	GGATCTTCGGCACGTG...	G	1.122e^-4	0.486	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16739132	3L_16739132_SNP [dm3] 3L_16746032_SNP [dm6]	G	A	1.123e^-4	0.486	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	11813266	3L_11813266_SNP [dm3] 3L_11820166_SNP [dm6]	G	C	1.124e^-4	0.486	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	26968033	3R_26968033_SNP [dm3] 3R_31142311_SNP [dm6]	A	T	1.127e^-4	0.486	INTRON Gycbeta100B
3R	24977657	3R_24977657_SNP [dm3] 3R_29151935_SNP [dm6]	A	T	1.129e^-4	0.486	UPSTREAM ligatin DOWNSTREAM Slbp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15043106	3L_15043106_SNP [dm3] 3L_15050006_SNP [dm6]	T	G	1.130e^-4	0.486	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta
2R	19455959	2R_19455959_SNP [dm3] 2R_23568436_SNP [dm6]	A	T	1.134e^-4	0.486	INTRON apt
2R	6763856	2R_6763856_SNP [dm3] 2R_10876351_SNP [dm6]	T	A	1.135e^-4	0.486	NON_SYNONYMOUS_CODING nclb UPSTREAM CG30016 DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14804597	3R_14804597_SNP [dm3] 3R_18978875_SNP [dm6]	C	G	1.137e^-4	0.486	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
X	7803518	X_7803518_SNP [dm3] X_7909485_SNP [dm6]	C	G	1.137e^-4	0.486	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	1.137e^-4	0.486	INTRON plum
3L	3261013	3L_3261013_DEL [dm3] 3L_3261013_DEL [dm6]	ATT	G	1.156e^-4	0.493	INTRON ckd
3R	6567987	3R_6567987_SNP [dm3] 3R_10742265_SNP [dm6]	C	T	1.161e^-4	0.494	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6571755	3R_6571755_SNP [dm3] 3R_10746033_SNP [dm6]	C	T	1.167e^-4	0.495	INTRON TkR86C
X	20043772	X_20043772_SNP [dm3] X_20149739_SNP [dm6]	C	T	1.168e^-4	0.495	INTRON CG9572
3L	16739188	3L_16739188_SNP [dm3] 3L_16746088_SNP [dm6]	G	A	1.182e^-4	0.499	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	11995783	3R_11995783_SNP [dm3] 3R_16170061_SNP [dm6]	A	C	1.185e^-4	0.499	UPSTREAM CR43472 INTRON CG6006	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2612106	2L_2612106_SNP [dm3] 2L_2612106_SNP [dm6]	G	T	1.188e^-4	0.499	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14745024	2R_14745024_SNP [dm3] 2R_18857519_SNP [dm6]	A	G	1.191e^-4	0.5	INTRON Jheh2
2R	9953246	2R_9953246_SNP [dm3] 2R_14065741_SNP [dm6]	C	G	1.196e^-4	0.501	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1635887	2L_1635887_SNP [dm3] 2L_1635887_SNP [dm6]	C	A	1.204e^-4	0.501	INTERGENIC
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	1.204e^-4	0.501	INTERGENIC
3L	12347759	3L_12347759_SNP [dm3] 3L_12354659_SNP [dm6]	G	A	1.205e^-4	0.501	INTERGENIC
2L	9364916	2L_9364916_SNP [dm3] 2L_9364916_SNP [dm6]	G	C	1.207e^-4	0.501	EXON CR43404
3R	25152941	3R_25152941_SNP [dm3] 3R_29327219_SNP [dm6]	C	T	1.212e^-4	0.502	INTERGENIC
2R	3648947	2R_3648947_SNP [dm3] 2R_7761442_SNP [dm6]	T	C	1.222e^-4	0.503	INTRON CG30497 & 1 other
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	1.231e^-4	0.503	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	1.231e^-4	0.503	DOWNSTREAM snoRNA:abba-a INTRON tn
2L	14501241	2L_14501241_SNP [dm3] 2L_14501241_SNP [dm6]	G	A	1.234e^-4	0.503	INTERGENIC
3R	6578614	3R_6578614_INS [dm3] 3R_10752892_INS [dm6]	C	CTTTGTTTTG	1.236e^-4	0.503	DOWNSTREAM CG14691 INTERGENIC	regulatory region REDfly_CRMs
3L	12288793	3L_12288793_SNP [dm3] 3L_12295693_SNP [dm6]	C	A	1.237e^-4	0.503	INTRON CG4328
2L	966402	2L_966402_SNP [dm3] 2L_966402_SNP [dm6]	T	A	1.237e^-4	0.503	INTERGENIC
3R	7944280	3R_7944280_SNP [dm3] 3R_12118558_SNP [dm6]	A	G	1.237e^-4	0.503	INTERGENIC
3R	8357927	3R_8357927_SNP [dm3] 3R_12532205_SNP [dm6]	T	C	1.241e^-4	0.504	INTRON Octbeta3R
3R	11884680	3R_11884680_SNP [dm3] 3R_16058958_SNP [dm6]	T	G	1.243e^-4	0.504	INTRON msps
3R	10665059	3R_10665059_SNP [dm3] 3R_14839337_SNP [dm6]	G	A	1.249e^-4	0.504	INTRON btsz
2L	11200150	2L_11200150_SNP [dm3] 2L_11200150_SNP [dm6]	C	T	1.251e^-4	0.504	INTRON Ca-beta
3L	15248370	3L_15248370_SNP [dm3] 3L_15255270_SNP [dm6]	T	G	1.256e^-4	0.504	INTERGENIC
3L	2841886	3L_2841886_SNP [dm3] 3L_2841886_SNP [dm6]	G	A	1.258e^-4	0.504	INTRON CG43444
2R	17067073	2R_17067073_SNP [dm3] 2R_21179568_SNP [dm6]	G	A	1.259e^-4	0.504	SYNONYMOUS_CODING Pu UPSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6598184	3R_6598184_DEL [dm3] 3R_10772462_DEL [dm6]	GGCGATG	G	1.260e^-4	0.504	DOWNSTREAM fau & 1 other	TF binding site mE1_TFBS_cad
X	4808521	X_4808521_SNP [dm3] X_4914488_SNP [dm6]	T	C	1.269e^-4	0.506	UTR_3_PRIME CG32772 DOWNSTREAM CG4041
2R	19455958	2R_19455958_SNP [dm3] 2R_23568435_SNP [dm6]	T	G	1.271e^-4	0.506	INTRON apt
2L	1639637	2L_1639637_SNP [dm3] 2L_1639637_SNP [dm6]	A	G	1.274e^-4	0.506	INTERGENIC
3R	11893989	3R_11893989_SNP [dm3] 3R_16068267_SNP [dm6]	A	C	1.279e^-4	0.506	UPSTREAM CG10185 DOWNSTREAM Mhcl INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11892454	3R_11892454_SNP [dm3] 3R_16066732_SNP [dm6]	A	T	1.280e^-4	0.506	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7791700	3R_7791700_SNP [dm3] 3R_11965978_SNP [dm6]	G	A	1.282e^-4	0.506	SYNONYMOUS_CODING CG12213	TF binding site mE1_TFBS_cad
3R	11960441	3R_11960441_SNP [dm3] 3R_16134719_SNP [dm6]	T	A	1.296e^-4	0.507	INTRON Sb
X	12692622	X_12692622_SNP [dm3] X_12798589_SNP [dm6]	C	T	1.297e^-4	0.507	INTRON Pde9
3R	11599143	3R_11599143_SNP [dm3] 3R_15773421_SNP [dm6]	A	C	1.297e^-4	0.507	UPSTREAM CG4525 DOWNSTREAM CR45206 INTERGENIC
3R	6287647	3R_6287647_SNP [dm3] 3R_10461925_SNP [dm6]	T	C	1.298e^-4	0.507	DOWNSTREAM CR44955 EXON CR44939	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11905552	3R_11905552_SNP [dm3] 3R_16079830_SNP [dm6]	G	A	1.300e^-4	0.507	NON_SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6577663	3R_6577663_SNP [dm3] 3R_10751941_SNP [dm6]	C	T	1.300e^-4	0.507	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3L	7853622	3L_7853622_SNP [dm3] 3L_7860522_SNP [dm6]	G	C	1.306e^-4	0.507	INTRON Pdp1
3R	7214188	3R_7214188_SNP [dm3] 3R_11388466_SNP [dm6]	A	C	1.307e^-4	0.507	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	1.308e^-4	0.507	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	8801937	3R_8801937_SNP [dm3] 3R_12976215_SNP [dm6]	G	A	1.315e^-4	0.509	INTRON CG7381
3R	6959727	3R_6959727_SNP [dm3] 3R_11134005_SNP [dm6]	A	C	1.318e^-4	0.509	INTERGENIC
3L	12163754	3L_12163754_INS [dm3] 3L_12170654_INS [dm6]	T	TT	1.324e^-4	0.51	INTRON Rh7
X	4808593	X_4808593_SNP [dm3] X_4914560_SNP [dm6]	G	A	1.339e^-4	0.514	UTR_3_PRIME CG32772 DOWNSTREAM CG4041
X	13613817	X_13613817_SNP [dm3] X_13719784_SNP [dm6]	T	C	1.340e^-4	0.514	NON_SYNONYMOUS_CODING CG9941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6893677	3L_6893677_SNP [dm3] 3L_6900577_SNP [dm6]	A	T	1.344e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10903985	2L_10903985_SNP [dm3] 2L_10903985_SNP [dm6]	T	C	1.353e^-4	0.515	UPSTREAM CR45724 INTERGENIC
2L	15940976	2L_15940976_SNP [dm3] 2L_15940976_SNP [dm6]	G	A	1.359e^-4	0.515	UPSTREAM CG12448 INTRON beat-Ib
2R	14623383	2R_14623383_SNP [dm3] 2R_18735878_SNP [dm6]	C	A	1.362e^-4	0.515	INTRON Hs3st-A
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	1.364e^-4	0.515	UPSTREAM CG34210 INTERGENIC
3L	15269759	3L_15269759_SNP [dm3] 3L_15276659_SNP [dm6]	A	C	1.364e^-4	0.515	INTERGENIC
3L	3348340	3L_3348340_SNP [dm3] 3L_3348340_SNP [dm6]	G	T	1.367e^-4	0.515	INTRON kst	TF binding site BDTNP1_TFBS_twi
2L	11919785	2L_11919785_SNP [dm3] 2L_11919785_SNP [dm6]	T	A	1.376e^-4	0.515	INTRON Pde1c
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	1.378e^-4	0.515	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	1.378e^-4	0.515	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3340226	2R_3340226_SNP [dm3] 2R_7452721_SNP [dm6]	A	C	1.379e^-4	0.515	DOWNSTREAM CR45320 INTERGENIC
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	1.380e^-4	0.515	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12814967	3L_12814967_SNP [dm3] 3L_12821867_SNP [dm6]	T	C	1.384e^-4	0.515	SPLICE_SITE_REGION CG42588 SYNONYMOUS_CODING CG42588
3R	6968594	3R_6968594_SNP [dm3] 3R_11142872_SNP [dm6]	G	T	1.385e^-4	0.515	INTERGENIC
3R	4151683	3R_4151683_SNP [dm3] 3R_8325961_SNP [dm6]	A	T	1.386e^-4	0.515	DOWNSTREAM CG7443 INTRON Poxm
3R	11567765	3R_11567765_SNP [dm3] 3R_15742043_SNP [dm6]	G	T	1.386e^-4	0.515	INTERGENIC
3L	9594519	3L_9594519_SNP [dm3] 3L_9601419_SNP [dm6]	T	A	1.391e^-4	0.515	UPSTREAM CG3306 & 1 other INTERGENIC
3R	11914444	3R_11914444_SNP [dm3] 3R_16088722_SNP [dm6]	G	T	1.392e^-4	0.515	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11887045	3R_11887045_SNP [dm3] 3R_16061323_SNP [dm6]	C	A	1.394e^-4	0.515	SYNONYMOUS_CODING CG10185 DOWNSTREAM msps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	1.404e^-4	0.515	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.407e^-4	0.515	INTRON fru
2R	14745054	2R_14745054_SNP [dm3] 2R_18857549_SNP [dm6]	C	T	1.408e^-4	0.515	INTRON Jheh2
2R	11515915	2R_11515915_SNP [dm3] 2R_15628410_SNP [dm6]	A	T	1.410e^-4	0.515	INTRON CG42524
2R	8145393	2R_8145393_SNP [dm3] 2R_12257888_SNP [dm6]	A	T	1.413e^-4	0.515	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3R	13552459	3R_13552459_DEL [dm3] 3R_17726737_DEL [dm6]	TGAAGCTTT	T	1.413e^-4	0.515	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	11891157	3R_11891157_SNP [dm3] 3R_16065435_SNP [dm6]	T	C	1.414e^-4	0.515	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_cad
3R	11958825	3R_11958825_SNP [dm3] 3R_16133103_SNP [dm6]	A	T	1.420e^-4	0.515	INTRON Sb
2R	8291920	2R_8291920_SNP [dm3] 2R_12404415_SNP [dm6]	A	T	1.422e^-4	0.515	SYNONYMOUS_CODING Cpr49Ae	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6409874	X_6409874_SNP [dm3] X_6515841_SNP [dm6]	A	C	1.424e^-4	0.515	INTRON CG42340
2R	10938533	2R_10938533_SNP [dm3] 2R_15051028_SNP [dm6]	C	T	1.424e^-4	0.515	UPSTREAM CR43622 INTERGENIC
X	4807099	X_4807099_SNP [dm3] X_4913066_SNP [dm6]	G	A	1.430e^-4	0.516	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10668731	3R_10668731_SNP [dm3] 3R_14843009_SNP [dm6]	G	A	1.438e^-4	0.516	INTRON btsz
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	1.440e^-4	0.516	INTRON grsm
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	1.443e^-4	0.516	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	2286520	X_2286520_SNP [dm3] X_2392487_SNP [dm6]	C	T	1.444e^-4	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6574923	3R_6574923_SNP [dm3] 3R_10749201_SNP [dm6]	G	T	1.445e^-4	0.516	INTRON TkR86C
3R	9963622	3R_9963622_SNP [dm3] 3R_14137900_SNP [dm6]	A	G	1.454e^-4	0.518	INTERGENIC
X	17157689	X_17157689_SNP [dm3] X_17263656_SNP [dm6]	T	A	1.459e^-4	0.519	INTRON f	TF binding site mE1_TFBS_inv
3R	5198177	3R_5198177_SNP [dm3] 3R_9372455_SNP [dm6]	C	T	1.476e^-4	0.522	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	1.483e^-4	0.522	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	4675799	3R_4675799_SNP [dm3] 3R_8850077_SNP [dm6]	C	A	1.484e^-4	0.522	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	10663527	3R_10663527_SNP [dm3] 3R_14837805_SNP [dm6]	C	T	1.489e^-4	0.522	INTRON btsz
3R	7793643	3R_7793643_SNP [dm3] 3R_11967921_SNP [dm6]	T	C	1.492e^-4	0.522	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13494587	2L_13494587_SNP [dm3] 2L_13494587_SNP [dm6]	C	A	1.497e^-4	0.522	INTRON CG42784
3R	24950563	3R_24950563_SNP [dm3] 3R_29124841_SNP [dm6]	C	G	1.499e^-4	0.522	INTRON CG11880
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	1.499e^-4	0.522	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11803487	2R_11803487_SNP [dm3] 2R_15915982_SNP [dm6]	T	C	1.502e^-4	0.522	UPSTREAM CR44373 INTRON sli
2L	13371389	2L_13371389_SNP [dm3] 2L_13371389_SNP [dm6]	A	T	1.504e^-4	0.522	UPSTREAM CG9306 DOWNSTREAM CG9305 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20949572	3R_20949572_SNP [dm3] 3R_25123850_SNP [dm6]	A	G	1.504e^-4	0.522	SYNONYMOUS_CODING vig2 UPSTREAM CG31510 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2309316	2L_2309316_SNP [dm3] 2L_2309316_SNP [dm6]	T	C	1.505e^-4	0.522	DOWNSTREAM CG16995 INTRON CG9967	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12810422	2R_12810422_SNP [dm3] 2R_16922917_SNP [dm6]	A	G	1.505e^-4	0.522	INTERGENIC
2R	19502356	2R_19502356_SNP [dm3] 2R_23614833_SNP [dm6]	C	T	1.505e^-4	0.522	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	5416402	3L_5416402_SNP [dm3] 3L_5423302_SNP [dm6]	G	T	1.522e^-4	0.522	UPSTREAM CG34391 INTERGENIC
3R	19324274	3R_19324274_SNP [dm3] 3R_23498552_SNP [dm6]	G	A	1.529e^-4	0.522	INTERGENIC
X	4809268	X_4809268_SNP [dm3] X_4915235_SNP [dm6]	T	C	1.534e^-4	0.522	DOWNSTREAM CG4041 & 1 other INTERGENIC
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	1.536e^-4	0.522	INTRON CG32432
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	1.539e^-4	0.522	UPSTREAM CG3306 & 1 other INTERGENIC
2R	6972862	2R_6972862_DEL [dm3] 2R_11085357_DEL [dm6]	CAGCGGGCTGC...	C	1.542e^-4	0.522	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10634068	3R_10634068_SNP [dm3] 3R_14808346_SNP [dm6]	T	C	1.543e^-4	0.522	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11504378	2L_11504378_SNP [dm3] 2L_11504378_SNP [dm6]	T	G	1.544e^-4	0.522	INTRON spz4
X	8756926	X_8756926_SNP [dm3] X_8862893_SNP [dm6]	T	G	1.545e^-4	0.522	INTRON CG12075
2R	7950494	2R_7950494_SNP [dm3] 2R_12062989_SNP [dm6]	G	A	1.546e^-4	0.522	DOWNSTREAM Drep-3 INTERGENIC
3R	6574413	3R_6574413_SNP [dm3] 3R_10748691_SNP [dm6]	G	C	1.549e^-4	0.522	INTRON TkR86C
3R	13635948	3R_13635948_SNP [dm3] 3R_17810226_SNP [dm6]	T	G	1.551e^-4	0.522	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4081475	3R_4081475_SNP [dm3] 3R_8255753_SNP [dm6]	T	A	1.554e^-4	0.522	INTRON mtg
3R	7821020	3R_7821020_SNP [dm3] 3R_11995298_SNP [dm6]	G	A	1.554e^-4	0.522	INTRON Tk	TF binding site mE1_TFBS_chinmo
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	1.556e^-4	0.522	INTERGENIC
3R	8028018	3R_8028018_SNP [dm3] 3R_12202296_SNP [dm6]	G	A	1.558e^-4	0.522	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13074763	3L_13074763_SNP [dm3] 3L_13081663_SNP [dm6]	G	A	1.563e^-4	0.522	EXON CR43652	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	14754932	X_14754932_SNP [dm3] X_14860899_SNP [dm6]	A	C	1.566e^-4	0.522	INTRON Flo2
2R	3063953	2R_3063953_SNP [dm3] 2R_7176448_SNP [dm6]	A	G	1.568e^-4	0.522	SYNONYMOUS_CODING CG11060 INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1635705	2L_1635705_SNP [dm3] 2L_1635705_SNP [dm6]	G	A	1.570e^-4	0.522	INTERGENIC
2R	14518108	2R_14518108_SNP [dm3] 2R_18630603_SNP [dm6]	T	A	1.571e^-4	0.522	INTRON CG5482
3L	14645815	3L_14645815_SNP [dm3] 3L_14652715_SNP [dm6]	A	G	1.572e^-4	0.522	INTRON dlp
2R	14496921	2R_14496921_SNP [dm3] 2R_18609416_SNP [dm6]	A	G	1.574e^-4	0.522	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7560879	3L_7560879_SNP [dm3] 3L_7567779_SNP [dm6]	T	G	1.574e^-4	0.522	INTRON frac
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	1.577e^-4	0.522	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	10660267	3R_10660267_SNP [dm3] 3R_14834545_SNP [dm6]	A	T	1.578e^-4	0.522	INTRON btsz
X	8220920	X_8220920_SNP [dm3] X_8326887_SNP [dm6]	G	T	1.584e^-4	0.522	INTRON nAChRalpha3
3L	5416388	3L_5416388_SNP [dm3] 3L_5423288_SNP [dm6]	T	A	1.587e^-4	0.522	UPSTREAM CG34391 INTERGENIC
2L	2612324	2L_2612324_SNP [dm3] 2L_2612324_SNP [dm6]	G	C	1.593e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8799967	3R_8799967_SNP [dm3] 3R_12974245_SNP [dm6]	C	T	1.594e^-4	0.522	INTRON CG7381
2L	4648712	2L_4648712_SNP [dm3] 2L_4648712_SNP [dm6]	T	A	1.601e^-4	0.522	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4648720	2L_4648720_SNP [dm3] 2L_4648720_SNP [dm6]	G	A	1.601e^-4	0.522	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8221353	X_8221353_SNP [dm3] X_8327320_SNP [dm6]	T	C	1.603e^-4	0.522	INTRON nAChRalpha3
2R	9954885	2R_9954885_SNP [dm3] 2R_14067380_SNP [dm6]	T	G	1.604e^-4	0.522	SYNONYMOUS_CODING Prosap INTRON Prosap
3R	11883859	3R_11883859_SNP [dm3] 3R_16058137_SNP [dm6]	C	A	1.605e^-4	0.522	SYNONYMOUS_CODING msps
2R	9308579	2R_9308579_SNP [dm3] 2R_13421074_SNP [dm6]	C	T	1.607e^-4	0.522	SYNONYMOUS_CODING CG42321
X	3012142	X_3012142_SNP [dm3] X_3118109_SNP [dm6]	G	C	1.612e^-4	0.523	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24721421	3R_24721421_SNP [dm3] 3R_28895699_SNP [dm6]	G	A	1.617e^-4	0.524	INTRON Doa
X	8220926	X_8220926_DEL [dm3] X_8326893_DEL [dm6]	GG	G	1.619e^-4	0.524	INTRON nAChRalpha3
X	2286538	X_2286538_INS [dm3] X_2392505_INS [dm6]	A	AA	1.627e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12810216	2R_12810216_SNP [dm3] 2R_16922711_SNP [dm6]	A	G	1.628e^-4	0.525	INTERGENIC
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	1.640e^-4	0.527	INTERGENIC
2R	14512952	2R_14512952_SNP [dm3] 2R_18625447_SNP [dm6]	C	T	1.640e^-4	0.527	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8221362	X_8221362_DEL [dm3] X_8327329_DEL [dm6]	GTTTCTTTTTGCAATATGTA...	C	1.644e^-4	0.527	INTRON nAChRalpha3
3R	6587608	3R_6587608_SNP [dm3] 3R_10761886_SNP [dm6]	A	G	1.656e^-4	0.529	NON_SYNONYMOUS_CODING Cap-H2 UTR_5_PRIME Cap-H2 UPSTREAM MED7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14744968	2R_14744968_SNP [dm3] 2R_18857463_SNP [dm6]	A	G	1.656e^-4	0.529	INTRON Jheh2
2R	10527509	2R_10527509_SNP [dm3] 2R_14640004_SNP [dm6]	C	A	1.662e^-4	0.529	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	1.668e^-4	0.529	INTERGENIC
3L	6379820	3L_6379820_SNP [dm3] 3L_6386720_SNP [dm6]	T	C	1.669e^-4	0.529	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	1.670e^-4	0.529	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
X	7778947	X_7778947_SNP [dm3] X_7884914_SNP [dm6]	C	G	1.671e^-4	0.529	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
X	19747288	X_19747288_SNP [dm3] X_19853255_SNP [dm6]	G	A	1.677e^-4	0.529	NON_SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	11416234	3R_11416234_SNP [dm3] 3R_15590512_SNP [dm6]	C	T	1.681e^-4	0.529	INTERGENIC
2L	18105108	2L_18105108_SNP [dm3] 2L_18105108_SNP [dm6]	A	G	1.683e^-4	0.529	INTERGENIC
2L	13494522	2L_13494522_SNP [dm3] 2L_13494522_SNP [dm6]	A	G	1.684e^-4	0.529	INTRON CG42784
X	3570203	X_3570203_SNP [dm3] X_3676170_SNP [dm6]	T	A	1.687e^-4	0.529	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8782135	3R_8782135_SNP [dm3] 3R_12956413_SNP [dm6]	T	A	1.688e^-4	0.529	INTRON grsm
2L	14548894	2L_14548894_SNP [dm3] 2L_14548894_SNP [dm6]	T	A	1.697e^-4	0.532	SYNONYMOUS_CODING CG4218
3R	18333329	3R_18333329_INS [dm3] 3R_22507607_INS [dm6]	C	TTTG	1.707e^-4	0.532	INTRON Octbeta1R
2L	11919178	2L_11919178_SNP [dm3] 2L_11919178_SNP [dm6]	A	T	1.710e^-4	0.532	INTRON Pde1c
3R	8809196	3R_8809196_SNP [dm3] 3R_12983474_SNP [dm6]	G	A	1.711e^-4	0.532	INTRON Paip2	TF binding site mE1_TFBS_cad
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	1.712e^-4	0.532	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	1.714e^-4	0.532	INTRON vir-1
3R	11911670	3R_11911670_SNP [dm3] 3R_16085948_SNP [dm6]	A	G	1.716e^-4	0.532	SYNONYMOUS_CODING sxe2 INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1555117	3L_1555117_SNP [dm3] 3L_1555117_SNP [dm6]	C	T	1.720e^-4	0.532	SYNONYMOUS_CODING Cct2 DOWNSTREAM CG12099	TF binding site mE1_TFBS_cad
3L	5416488	3L_5416488_SNP [dm3] 3L_5423388_SNP [dm6]	C	T	1.722e^-4	0.532	UPSTREAM CG34391 INTERGENIC
3R	8109644	3R_8109644_INS [dm3] 3R_12283922_INS [dm6]	T	TT	1.732e^-4	0.532	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16774240	2R_16774240_SNP [dm3] 2R_20886735_SNP [dm6]	G	A	1.735e^-4	0.532	SPLICE_SITE_REGION otp INTRON otp
3L	1324727	3L_1324727_SNP [dm3] 3L_1324727_SNP [dm6]	T	C	1.739e^-4	0.532	UPSTREAM Myo61F & 1 other INTRON Myo61F	TF binding site mE1_TFBS_cad
3R	11923014	3R_11923014_SNP [dm3] 3R_16097292_SNP [dm6]	T	C	1.744e^-4	0.532	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7222276	2R_7222276_SNP [dm3] 2R_11334771_SNP [dm6]	G	A	1.745e^-4	0.532	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2609794	X_2609794_SNP [dm3] X_2715761_SNP [dm6]	A	G	1.747e^-4	0.532	SYNONYMOUS_CODING CG2694
3R	12134608	3R_12134608_SNP [dm3] 3R_16308886_SNP [dm6]	C	T	1.749e^-4	0.532	DOWNSTREAM Zip89B INTERGENIC
X	6626091	X_6626091_SNP [dm3] X_6732058_SNP [dm6]	C	T	1.749e^-4	0.532	UPSTREAM CR43461 INTRON CG3168	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	1.750e^-4	0.532	INTRON fru
3L	9594490	3L_9594490_DEL [dm3] 3L_9601390_DEL [dm6]	ATTTCT	A	1.753e^-4	0.532	UPSTREAM CG3306 & 1 other INTERGENIC
3R	6578629	3R_6578629_SNP [dm3] 3R_10752907_SNP [dm6]	A	C	1.754e^-4	0.532	DOWNSTREAM CG14691 INTERGENIC	regulatory region REDfly_CRMs
3R	7990189	3R_7990189_SNP [dm3] 3R_12164467_SNP [dm6]	T	A	1.755e^-4	0.532	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6449202	3L_6449202_SNP [dm3] 3L_6456102_SNP [dm6]	T	C	1.765e^-4	0.534	INTRON CG42747
2L	7111408	2L_7111408_SNP [dm3] 2L_7111408_SNP [dm6]	T	C	1.774e^-4	0.535	INTRON Pvf3
2L	20038760	2L_20038760_SNP [dm3] 2L_20038760_SNP [dm6]	G	A	1.777e^-4	0.535	INTRON sNPF
3L	6733232	3L_6733232_SNP [dm3] 3L_6740132_SNP [dm6]	T	A	1.780e^-4	0.535	DOWNSTREAM dikar INTRON dikar
2R	14505099	2R_14505099_SNP [dm3] 2R_18617594_SNP [dm6]	G	T	1.781e^-4	0.535	SYNONYMOUS_CODING CG5493 UTR_3_PRIME CG5327
3L	11292769	3L_11292769_SNP [dm3] 3L_11299669_SNP [dm6]	A	G	1.800e^-4	0.54	INTERGENIC
2L	15139082	2L_15139082_SNP [dm3] 2L_15139082_SNP [dm6]	C	A	1.806e^-4	0.54	INTERGENIC
2L	19903746	2L_19903746_SNP [dm3] 2L_19903746_SNP [dm6]	A	G	1.809e^-4	0.54	INTRON sick
3L	3260934	3L_3260934_SNP [dm3] 3L_3260934_SNP [dm6]	T	C	1.810e^-4	0.54	INTRON ckd
2R	14745144	2R_14745144_SNP [dm3] 2R_18857639_SNP [dm6]	G	A	1.814e^-4	0.541	INTRON Jheh2
2R	2103360	2R_2103360_SNP [dm3] 2R_6215855_SNP [dm6]	T	A	1.822e^-4	0.541	DOWNSTREAM CR44161 INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	1.824e^-4	0.541	INTRON kek3
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	1.827e^-4	0.541	DOWNSTREAM Cpn INTERGENIC
2R	6763773	2R_6763773_SNP [dm3] 2R_10876268_SNP [dm6]	C	T	1.828e^-4	0.541	SYNONYMOUS_CODING nclb UPSTREAM CG30016	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6681161	2R_6681161_SNP [dm3] 2R_10793656_SNP [dm6]	T	C	1.830e^-4	0.541	DOWNSTREAM mthl13 INTRON CG33144
2R	16019985	2R_16019985_SNP [dm3] 2R_20132480_SNP [dm6]	C	G	1.830e^-4	0.541	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19231132	3R_19231132_SNP [dm3] 3R_23405410_SNP [dm6]	G	A	1.833e^-4	0.541	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
2L	13086211	2L_13086211_SNP [dm3] 2L_13086211_SNP [dm6]	G	C	1.843e^-4	0.542	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	1.844e^-4	0.542	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	12612640	2R_12612640_SNP [dm3] 2R_16725135_SNP [dm6]	A	T	1.848e^-4	0.542	INTRON CG30463
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	1.850e^-4	0.542	DOWNSTREAM PpN58A INTRON Fili
X	18170005	X_18170005_SNP [dm3] X_18275972_SNP [dm6]	G	T	1.853e^-4	0.542	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	10169182	2L_10169182_SNP [dm3] 2L_10169182_SNP [dm6]	T	G	1.857e^-4	0.542	INTRON CG44153
3R	12035285	3R_12035285_SNP [dm3] 3R_16209563_SNP [dm6]	G	A	1.864e^-4	0.542	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
2R	18608804	2R_18608804_SNP [dm3] 2R_22721299_SNP [dm6]	T	C	1.878e^-4	0.542	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11896249	3R_11896249_SNP [dm3] 3R_16070527_SNP [dm6]	G	T	1.878e^-4	0.542	INTRON Mhcl	TF binding site mE1_TFBS_cad
2R	8436989	2R_8436989_SNP [dm3] 2R_12549484_SNP [dm6]	A	G	1.878e^-4	0.542	INTRON fra
3L	12458586	3L_12458586_SNP [dm3] 3L_12465486_SNP [dm6]	G	A	1.879e^-4	0.542	INTRON eyg	TF binding site mE1_TFBS_chinmo
X	14543393	X_14543393_DEL [dm3] X_14649360_DEL [dm6]	GCATATGTATATTTGTATAT...	G	1.881e^-4	0.542	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6286616	3R_6286616_SNP [dm3] 3R_10460894_SNP [dm6]	T	C	1.887e^-4	0.542	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14463490	3R_14463490_DEL [dm3] 3R_18637768_DEL [dm6]	GTGCACCG	G	1.892e^-4	0.542	INTRON qin & 1 other
3R	8807281	3R_8807281_SNP [dm3] 3R_12981559_SNP [dm6]	G	A	1.893e^-4	0.542	INTRON Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	18390482	2R_18390482_SNP [dm3] 2R_22502977_SNP [dm6]	C	G	1.896e^-4	0.542	INTRON px
3R	13071379	3R_13071379_SNP [dm3] 3R_17245657_SNP [dm6]	T	C	1.901e^-4	0.542	INTRON beat-IIb
2L	3210678	2L_3210678_SNP [dm3] 2L_3210678_SNP [dm6]	G	A	1.901e^-4	0.542	EXON CR45336
X	4809309	X_4809309_SNP [dm3] X_4915276_SNP [dm6]	T	A	1.902e^-4	0.542	DOWNSTREAM CG4041 & 1 other INTERGENIC
3R	12148769	3R_12148769_SNP [dm3] 3R_16323047_SNP [dm6]	T	A	1.905e^-4	0.542	UPSTREAM CG6901 DOWNSTREAM CG44044 INTRON Sulf1
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	1.911e^-4	0.542	INTRON CG42747
3L	16023021	3L_16023021_SNP [dm3] 3L_16029921_SNP [dm6]	C	T	1.917e^-4	0.542	SYNONYMOUS_CODING Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11954652	3R_11954652_SNP [dm3] 3R_16128930_SNP [dm6]	C	A	1.920e^-4	0.542	INTRON Sb
X	14993157	X_14993157_SNP [dm3] X_15099124_SNP [dm6]	T	A	1.922e^-4	0.542	INTRON Rab3-GEF
3R	7760118	3R_7760118_SNP [dm3] 3R_11934396_SNP [dm6]	C	T	1.925e^-4	0.542	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15080219	2R_15080219_SNP [dm3] 2R_19192714_SNP [dm6]	G	A	1.927e^-4	0.542	INTRON hppy
2L	9817519	2L_9817519_SNP [dm3] 2L_9817519_SNP [dm6]	G	T	1.927e^-4	0.542	INTRON nAChRalpha6
2L	14392843	2L_14392843_SNP [dm3] 2L_14392843_SNP [dm6]	T	C	1.928e^-4	0.542	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	1.929e^-4	0.542	UPSTREAM CG15553 INTERGENIC
X	12604993	X_12604993_SNP [dm3] X_12710960_SNP [dm6]	G	T	1.933e^-4	0.542	NON_SYNONYMOUS_CODING Smr
X	14542863	X_14542863_DEL [dm3] X_14648830_DEL [dm6]	GCGCC	G	1.938e^-4	0.542	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3L	9607091	3L_9607091_SNP [dm3] 3L_9613991_SNP [dm6]	C	A	1.939e^-4	0.542	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607107	3L_9607107_DEL [dm3] 3L_9614007_DEL [dm6]	TT	T	1.939e^-4	0.542	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	24946433	3R_24946433_SNP [dm3] 3R_29120711_SNP [dm6]	G	C	1.940e^-4	0.542	SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
2R	6763989	2R_6763989_SNP [dm3] 2R_10876484_SNP [dm6]	T	C	1.942e^-4	0.542	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	27132705	3R_27132705_SNP [dm3] 3R_31306983_SNP [dm6]	C	A	1.948e^-4	0.542	INTERGENIC
3R	11554457	3R_11554457_SNP [dm3] 3R_15728735_SNP [dm6]	A	T	1.953e^-4	0.542	INTERGENIC
3R	12145555	3R_12145555_SNP [dm3] 3R_16319833_SNP [dm6]	A	G	1.955e^-4	0.542	INTRON Sulf1
3R	10668376	3R_10668376_SNP [dm3] 3R_14842654_SNP [dm6]	T	C	1.958e^-4	0.542	INTRON btsz
X	5724133	X_5724133_SNP [dm3] X_5830100_SNP [dm6]	G	A	1.959e^-4	0.542	INTRON CG15765
2R	18697017	2R_18697017_SNP [dm3] 2R_22809512_SNP [dm6]	A	G	1.960e^-4	0.542	INTRON stl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14518005	2R_14518005_SNP [dm3] 2R_18630500_SNP [dm6]	G	A	1.961e^-4	0.542	SYNONYMOUS_CODING CG5482
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	1.963e^-4	0.542	INTRON Cad87A
X	12604988	X_12604988_SNP [dm3] X_12710955_SNP [dm6]	A	C	1.973e^-4	0.543	NON_SYNONYMOUS_CODING Smr
3R	10605555	3R_10605555_SNP [dm3] 3R_14779833_SNP [dm6]	T	A	1.976e^-4	0.543	INTRON jvl
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	1.976e^-4	0.543	INTRON GlcAT-P
3L	7474974	3L_7474974_SNP [dm3] 3L_7481874_SNP [dm6]	A	G	1.981e^-4	0.543	INTERGENIC
2R	5025985	2R_5025985_SNP [dm3] 2R_9138480_SNP [dm6]	G	A	1.981e^-4	0.543	UPSTREAM CG8788 & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11862806	3R_11862806_INS [dm3] 3R_16037084_INS [dm6]	T	TGTTTC	1.982e^-4	0.543	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	7964250	3R_7964250_SNP [dm3] 3R_12138528_SNP [dm6]	C	G	1.985e^-4	0.543	DOWNSTREAM dpr15 INTERGENIC
3R	11898025	3R_11898025_SNP [dm3] 3R_16072303_SNP [dm6]	G	A	1.991e^-4	0.543	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14135405	2L_14135405_SNP [dm3] 2L_14135405_SNP [dm6]	G	T	1.997e^-4	0.543	INTRON CG17341
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	1.998e^-4	0.543	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
X	9597019	X_9597019_SNP [dm3] X_9702986_SNP [dm6]	T	C	1.998e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	3562045	2R_3562045_SNP [dm3] 2R_7674540_SNP [dm6]	C	T	2.002e^-4	0.543	UTR_5_PRIME CG12107 UPSTREAM mRpL52 DOWNSTREAM U2A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8798173	3R_8798173_SNP [dm3] 3R_12972451_SNP [dm6]	G	C	2.002e^-4	0.543	UPSTREAM CG7381 INTRON CG7381
3R	11451962	3R_11451962_SNP [dm3] 3R_15626240_SNP [dm6]	G	C	2.005e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	20214320	2R_20214320_SNP [dm3] 2R_24326797_SNP [dm6]	C	T	2.011e^-4	0.543	INTRON CR44810
3L	13283132	3L_13283132_SNP [dm3] 3L_13290032_SNP [dm6]	G	T	2.019e^-4	0.543	DOWNSTREAM CR43912 INTERGENIC
3R	11904031	3R_11904031_SNP [dm3] 3R_16078309_SNP [dm6]	A	T	2.021e^-4	0.543	DOWNSTREAM CG32855 INTRON Mhcl
3R	11455531	3R_11455531_SNP [dm3] 3R_15629809_SNP [dm6]	C	T	2.021e^-4	0.543	INTERGENIC
3R	23121638	3R_23121638_SNP [dm3] 3R_27295916_SNP [dm6]	G	A	2.022e^-4	0.543	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11379158	2R_11379158_SNP [dm3] 2R_15491653_SNP [dm6]	A	T	2.024e^-4	0.543	INTRON CG12964
3L	9607068	3L_9607068_SNP [dm3] 3L_9613968_SNP [dm6]	T	C	2.036e^-4	0.543	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13880697	3L_13880697_SNP [dm3] 3L_13887597_SNP [dm6]	G	C	2.040e^-4	0.543	INTRON dysc
3R	7975272	3R_7975272_SNP [dm3] 3R_12149550_SNP [dm6]	C	T	2.047e^-4	0.543	INTRON dpr15
2R	10707166	2R_10707166_SNP [dm3] 2R_14819661_SNP [dm6]	A	G	2.049e^-4	0.543	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9607243	3L_9607243_SNP [dm3] 3L_9614143_SNP [dm6]	A	G	2.052e^-4	0.543	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9607256	3L_9607256_SNP [dm3] 3L_9614156_SNP [dm6]	G	T	2.052e^-4	0.543	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	5416468	3L_5416468_SNP [dm3] 3L_5423368_SNP [dm6]	A	T	2.058e^-4	0.543	UPSTREAM CG34391 INTERGENIC
3R	8027647	3R_8027647_SNP [dm3] 3R_12201925_SNP [dm6]	A	T	2.064e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14542849	X_14542849_SNP [dm3] X_14648816_SNP [dm6]	T	C	2.068e^-4	0.543	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	12634175	3R_12634175_SNP [dm3] 3R_16808453_SNP [dm6]	T	C	2.071e^-4	0.543	UTR_3_PRIME abd-A
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	2.077e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	21418295	3R_21418295_SNP [dm3] 3R_25592573_SNP [dm6]	G	A	2.077e^-4	0.543	DOWNSTREAM ymp INTRON msi & 1 other
3R	24721594	3R_24721594_SNP [dm3] 3R_28895872_SNP [dm6]	C	G	2.078e^-4	0.543	INTRON Doa
3R	12134696	3R_12134696_SNP [dm3] 3R_16308974_SNP [dm6]	T	C	2.079e^-4	0.543	DOWNSTREAM Zip89B INTERGENIC
3R	20164904	3R_20164904_SNP [dm3] 3R_24339182_SNP [dm6]	C	T	2.079e^-4	0.543	SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10404253	2R_10404253_SNP [dm3] 2R_14516748_SNP [dm6]	C	A	2.081e^-4	0.543	INTERGENIC
2L	15139064	2L_15139064_DEL [dm3] 2L_15139064_DEL [dm6]	TTACGAAAA	C	2.083e^-4	0.543	INTERGENIC
3R	26612509	3R_26612509_SNP [dm3] 3R_30786787_SNP [dm6]	G	A	2.085e^-4	0.543	UTR_3_PRIME zfh1
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	2.088e^-4	0.543	INTRON Cad87A
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	2.090e^-4	0.543	UPSTREAM CG17292 INTRON CG17292
X	8220914	X_8220914_SNP [dm3] X_8326881_SNP [dm6]	A	G	2.091e^-4	0.543	INTRON nAChRalpha3
3R	8777175	3R_8777175_SNP [dm3] 3R_12951453_SNP [dm6]	G	A	2.097e^-4	0.543	INTRON grsm
2R	5028422	2R_5028422_SNP [dm3] 2R_9140917_SNP [dm6]	C	T	2.099e^-4	0.543	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	7065634	2R_7065634_SNP [dm3] 2R_11178129_SNP [dm6]	G	T	2.105e^-4	0.543	INTRON shn	TF binding site mE1_TFBS_inv
3R	9458974	3R_9458974_SNP [dm3] 3R_13633252_SNP [dm6]	C	T	2.107e^-4	0.543	SYNONYMOUS_CODING CG10841
2R	12138504	2R_12138504_SNP [dm3] 2R_16250999_SNP [dm6]	T	G	2.108e^-4	0.543	INTRON CngA
2R	12138525	2R_12138525_SNP [dm3] 2R_16251020_SNP [dm6]	T	G	2.108e^-4	0.543	INTRON CngA
3R	8805079	3R_8805079_SNP [dm3] 3R_12979357_SNP [dm6]	A	T	2.114e^-4	0.543	SYNONYMOUS_CODING CG7091
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	2.114e^-4	0.543	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1264128	3L_1264128_SNP [dm3] 3L_1264128_SNP [dm6]	A	C	2.116e^-4	0.543	INTRON CG9134
2L	10382634	2L_10382634_SNP [dm3] 2L_10382634_SNP [dm6]	G	A	2.124e^-4	0.543	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_kn
3R	12079855	3R_12079855_SNP [dm3] 3R_16254133_SNP [dm6]	C	G	2.132e^-4	0.543	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15824728	2L_15824728_SNP [dm3] 2L_15824728_SNP [dm6]	A	G	2.135e^-4	0.543	INTERGENIC
2R	12138487	2R_12138487_SNP [dm3] 2R_16250982_SNP [dm6]	C	T	2.135e^-4	0.543	INTRON CngA
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	2.140e^-4	0.543	UPSTREAM CG10126 INTERGENIC
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	2.143e^-4	0.543	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	19231897	3R_19231897_SNP [dm3] 3R_23406175_SNP [dm6]	G	A	2.145e^-4	0.543	SYNONYMOUS_CODING Ir94e
3R	10545927	3R_10545927_SNP [dm3] 3R_14720205_SNP [dm6]	G	T	2.145e^-4	0.543	INTRON kibra	TF binding site BDTNP1_TFBS_dl
3L	4164031	3L_4164031_SNP [dm3] 3L_4164031_SNP [dm6]	G	A	2.148e^-4	0.543	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8783040	3R_8783040_INS [dm3] 3R_12957318_INS [dm6]	A	AA	2.149e^-4	0.543	INTRON grsm
X	3382120	X_3382120_SNP [dm3] X_3488087_SNP [dm6]	G	A	2.152e^-4	0.543	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_dl
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	2.153e^-4	0.543	INTRON GC1
3L	1827837	3L_1827837_SNP [dm3] 3L_1827837_SNP [dm6]	A	T	2.155e^-4	0.543	INTRON Cpr62Ba
3L	11813292	3L_11813292_SNP [dm3] 3L_11820192_SNP [dm6]	T	C	2.155e^-4	0.543	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	11944816	2R_11944816_SNP [dm3] 2R_16057311_SNP [dm6]	A	G	2.159e^-4	0.543	NON_SYNONYMOUS_CODING CG8405	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4917160	2L_4917160_SNP [dm3] 2L_4917160_SNP [dm6]	T	A	2.165e^-4	0.543	INTRON hoe1
3R	8798003	3R_8798003_SNP [dm3] 3R_12972281_SNP [dm6]	A	T	2.170e^-4	0.543	UPSTREAM CG7381 INTRON CG7381
2R	12138495	2R_12138495_SNP [dm3] 2R_16250990_SNP [dm6]	G	T	2.170e^-4	0.543	INTRON CngA
3L	5514232	3L_5514232_SNP [dm3] 3L_5521132_SNP [dm6]	A	T	2.172e^-4	0.543	INTRON Lkr
2L	13494523	2L_13494523_SNP [dm3] 2L_13494523_SNP [dm6]	T	A	2.175e^-4	0.543	INTRON CG42784
3R	6739286	3R_6739286_DEL [dm3] 3R_10913564_DEL [dm6]	CATTT	C	2.176e^-4	0.543	INTERGENIC
3R	11751055	3R_11751055_SNP [dm3] 3R_15925333_SNP [dm6]	G	T	2.182e^-4	0.543	UPSTREAM CG34276 INTRON CG4221
2L	6127252	2L_6127252_SNP [dm3] 2L_6127252_SNP [dm6]	A	G	2.184e^-4	0.543	SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10818326	2L_10818326_SNP [dm3] 2L_10818326_SNP [dm6]	T	G	2.187e^-4	0.543	UPSTREAM CG6508 INTRON Nos
X	7358854	X_7358854_SNP [dm3] X_7464821_SNP [dm6]	C	T	2.188e^-4	0.543	INTERGENIC
X	5724248	X_5724248_SNP [dm3] X_5830215_SNP [dm6]	C	T	2.194e^-4	0.543	INTRON CG15765
X	4804165	X_4804165_SNP [dm3] X_4910132_SNP [dm6]	C	G	2.196e^-4	0.543	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2138686	2L_2138686_SNP [dm3] 2L_2138686_SNP [dm6]	A	T	2.201e^-4	0.543	INTRON tho2	TF binding site mE1_TFBS_sens
3R	12147091	3R_12147091_SNP [dm3] 3R_16321369_SNP [dm6]	G	C	2.201e^-4	0.543	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
3L	11231486	3L_11231486_SNP [dm3] 3L_11238386_SNP [dm6]	G	T	2.202e^-4	0.543	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12389671	2R_12389671_SNP [dm3] 2R_16502166_SNP [dm6]	C	A	2.203e^-4	0.543	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3L	6895881	3L_6895881_SNP [dm3] 3L_6902781_SNP [dm6]	G	A	2.209e^-4	0.543	INTERGENIC
2L	5717234	2L_5717234_SNP [dm3] 2L_5717234_SNP [dm6]	A	G	2.209e^-4	0.543	UPSTREAM CG14007 DOWNSTREAM CR44818 & 1 other INTRON CG34011
3R	6276824	3R_6276824_SNP [dm3] 3R_10451102_SNP [dm6]	T	G	2.213e^-4	0.543	INTERGENIC
3R	6298880	3R_6298880_SNP [dm3] 3R_10473158_SNP [dm6]	A	C	2.213e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6574424	3R_6574424_SNP [dm3] 3R_10748702_SNP [dm6]	C	A	2.215e^-4	0.543	INTRON TkR86C
3L	1436415	3L_1436415_SNP [dm3] 3L_1436415_SNP [dm6]	T	A	2.216e^-4	0.543	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12179421	3L_12179421_SNP [dm3] 3L_12186321_SNP [dm6]	A	G	2.219e^-4	0.543	INTRON CG6910
3R	11538590	3R_11538590_SNP [dm3] 3R_15712868_SNP [dm6]	G	A	2.224e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6974985	3R_6974985_SNP [dm3] 3R_11149263_SNP [dm6]	G	A	2.231e^-4	0.544	INTERGENIC
3R	8120715	3R_8120715_SNP [dm3] 3R_12294993_SNP [dm6]	C	T	2.232e^-4	0.544	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5416477	3L_5416477_SNP [dm3] 3L_5423377_SNP [dm6]	C	T	2.237e^-4	0.544	UPSTREAM CG34391 INTERGENIC
2L	14126587	2L_14126587_SNP [dm3] 2L_14126587_SNP [dm6]	A	G	2.240e^-4	0.544	INTERGENIC
3R	12201122	3R_12201122_SNP [dm3] 3R_16375400_SNP [dm6]	A	T	2.241e^-4	0.544	UTR_3_PRIME ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14163496	2L_14163496_SNP [dm3] 2L_14163496_SNP [dm6]	C	G	2.244e^-4	0.544	UPSTREAM CG43332 DOWNSTREAM CG43333 INTERGENIC
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	2.248e^-4	0.544	INTRON CG10089
2R	1243712	2R_1243712_SNP [dm3] 2R_5356207_SNP [dm6]	C	A	2.252e^-4	0.544	INTERGENIC
3L	939423	3L_939423_SNP [dm3] 3L_939423_SNP [dm6]	G	C	2.255e^-4	0.544	INTRON Glut1
3R	10659942	3R_10659942_SNP [dm3] 3R_14834220_SNP [dm6]	C	T	2.260e^-4	0.544	INTRON btsz
3R	10659952	3R_10659952_SNP [dm3] 3R_14834230_SNP [dm6]	G	A	2.260e^-4	0.544	INTRON btsz
3R	6886403	3R_6886403_DEL [dm3] 3R_11060681_DEL [dm6]	GAGGAGGAGGAG...	G	2.263e^-4	0.544	INTERGENIC
2R	10527990	2R_10527990_SNP [dm3] 2R_14640485_SNP [dm6]	G	T	2.271e^-4	0.544	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5050835	2R_5050835_SNP [dm3] 2R_9163330_SNP [dm6]	T	C	2.272e^-4	0.544	NON_SYNONYMOUS_CODING CG8046 SPLICE_SITE_REGION CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10653231	3R_10653231_SNP [dm3] 3R_14827509_SNP [dm6]	G	A	2.276e^-4	0.544	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17900848	2R_17900848_SNP [dm3] 2R_22013343_SNP [dm6]	A	G	2.280e^-4	0.544	INTRON CG34370
3R	5640520	3R_5640520_SNP [dm3] 3R_9814798_SNP [dm6]	T	C	2.280e^-4	0.544	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
3R	6973440	3R_6973440_SNP [dm3] 3R_11147718_SNP [dm6]	T	C	2.287e^-4	0.544	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15139061	2L_15139061_SNP [dm3] 2L_15139061_SNP [dm6]	T	A	2.289e^-4	0.544	INTERGENIC
3R	11903049	3R_11903049_SNP [dm3] 3R_16077327_SNP [dm6]	A	T	2.292e^-4	0.544	SYNONYMOUS_CODING Mhcl
2R	3348324	2R_3348324_SNP [dm3] 2R_7460819_SNP [dm6]	T	C	2.303e^-4	0.544	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2R	14645110	2R_14645110_SNP [dm3] 2R_18757605_SNP [dm6]	A	C	2.304e^-4	0.544	DOWNSTREAM Jabba & 1 other INTRON Jabba
2L	8882636	2L_8882636_SNP [dm3] 2L_8882636_SNP [dm6]	A	T	2.313e^-4	0.544	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	15139041	2L_15139041_DEL [dm3] 2L_15139041_DEL [dm6]	AAGTAGAATAAAGTGTC...	A	2.314e^-4	0.544	INTERGENIC
3R	9566198	3R_9566198_SNP [dm3] 3R_13740476_SNP [dm6]	A	G	2.320e^-4	0.544	INTRON CG34383
2L	16836017	2L_16836017_SNP [dm3] 2L_16836017_SNP [dm6]	C	T	2.321e^-4	0.544	NON_SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
3L	19310048	3L_19310048_SNP [dm3] 3L_19316948_SNP [dm6]	C	T	2.322e^-4	0.544	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	939183	3L_939183_SNP [dm3] 3L_939183_SNP [dm6]	A	T	2.324e^-4	0.544	INTRON Glut1
3R	11580407	3R_11580407_SNP [dm3] 3R_15754685_SNP [dm6]	A	G	2.329e^-4	0.544	INTERGENIC
2R	12138512	2R_12138512_DEL [dm3] 2R_16251007_DEL [dm6]	TT	T	2.337e^-4	0.544	INTRON CngA
3L	14441456	3L_14441456_SNP [dm3] 3L_14448356_SNP [dm6]	G	T	2.339e^-4	0.544	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	3017867	2L_3017867_SNP [dm3] 2L_3017867_SNP [dm6]	T	G	2.341e^-4	0.544	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
3L	8654154	3L_8654154_SNP [dm3] 3L_8661054_SNP [dm6]	C	T	2.346e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26559845	3R_26559845_SNP [dm3] 3R_30734123_SNP [dm6]	T	C	2.349e^-4	0.544	INTERGENIC
X	3326449	X_3326449_SNP [dm3] X_3432416_SNP [dm6]	T	C	2.350e^-4	0.544	INTRON CR44999 & 1 other
2R	12153135	2R_12153135_SNP [dm3] 2R_16265630_SNP [dm6]	A	G	2.351e^-4	0.544	SPLICE_SITE_REGION csul INTRON csul
2L	8405883	2L_8405883_SNP [dm3] 2L_8405883_SNP [dm6]	C	T	2.356e^-4	0.544	INTRON emb	TF binding site mE1_TFBS_sens
3L	5988869	3L_5988869_INS [dm3] 3L_5995769_INS [dm6]	G	GCAGG	2.356e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6570565	3R_6570565_SNP [dm3] 3R_10744843_SNP [dm6]	T	G	2.361e^-4	0.544	INTRON TkR86C
3R	15152882	3R_15152882_SNP [dm3] 3R_19327160_SNP [dm6]	G	C	2.363e^-4	0.544	UPSTREAM Dl & 1 other EXON CR44175 & 1 other
2R	12139746	2R_12139746_SNP [dm3] 2R_16252241_SNP [dm6]	T	G	2.364e^-4	0.544	INTRON CngA
3R	10653148	3R_10653148_SNP [dm3] 3R_14827426_SNP [dm6]	G	T	2.369e^-4	0.544	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	11553285	3R_11553285_INS [dm3] 3R_15727563_INS [dm6]	A	AA	2.370e^-4	0.544	INTERGENIC
3R	11903394	3R_11903394_SNP [dm3] 3R_16077672_SNP [dm6]	C	A	2.374e^-4	0.544	INTRON Mhcl
2R	12389667	2R_12389667_SNP [dm3] 2R_16502162_SNP [dm6]	G	T	2.374e^-4	0.544	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2R	9903334	2R_9903334_SNP [dm3] 2R_14015829_SNP [dm6]	C	T	2.375e^-4	0.544	INTRON mam
3L	7446986	3L_7446986_SNP [dm3] 3L_7453886_SNP [dm6]	A	G	2.377e^-4	0.544	UTR_3_PRIME CG42458
3R	11453879	3R_11453879_SNP [dm3] 3R_15628157_SNP [dm6]	T	C	2.377e^-4	0.544	INTERGENIC
X	19195336	X_19195336_SNP [dm3] X_19301303_SNP [dm6]	G	C	2.379e^-4	0.544	DOWNSTREAM CG8051 & 1 other INTERGENIC
X	8732881	X_8732881_INS [dm3] X_8838848_INS [dm6]	A	ATGGA	2.389e^-4	0.544	INTRON CG12075
2L	11465461	2L_11465461_SNP [dm3] 2L_11465461_SNP [dm6]	A	G	2.391e^-4	0.544	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14020809	2R_14020809_SNP [dm3] 2R_18133304_SNP [dm6]	A	T	2.393e^-4	0.544	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	5560883	2L_5560883_DEL [dm3] 2L_5560883_DEL [dm6]	ATCTTAAAA	A	2.396e^-4	0.544	INTRON GluRIIB
3L	15607412	3L_15607412_SNP [dm3] 3L_15614312_SNP [dm6]	G	C	2.407e^-4	0.544	INTRON comm3
2R	16019746	2R_16019746_SNP [dm3] 2R_20132241_SNP [dm6]	A	G	2.411e^-4	0.544	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	2.412e^-4	0.544	INTRON Indy
2R	14645109	2R_14645109_SNP [dm3] 2R_18757604_SNP [dm6]	A	T	2.413e^-4	0.544	DOWNSTREAM Jabba & 1 other INTRON Jabba
2L	1076108	2L_1076108_SNP [dm3] 2L_1076108_SNP [dm6]	G	A	2.419e^-4	0.544	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5416401	3L_5416401_SNP [dm3] 3L_5423301_SNP [dm6]	G	T	2.423e^-4	0.544	UPSTREAM CG34391 INTERGENIC
3R	11896238	3R_11896238_SNP [dm3] 3R_16070516_SNP [dm6]	G	T	2.423e^-4	0.544	INTRON Mhcl	TF binding site mE1_TFBS_cad
3L	9005730	3L_9005730_SNP [dm3] 3L_9012630_SNP [dm6]	G	A	2.424e^-4	0.544	DOWNSTREAM Doc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11897232	3R_11897232_SNP [dm3] 3R_16071510_SNP [dm6]	G	A	2.428e^-4	0.544	SPLICE_SITE_REGION Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	2.429e^-4	0.544	INTRON Cad87A
2R	12810334	2R_12810334_SNP [dm3] 2R_16922829_SNP [dm6]	G	A	2.430e^-4	0.544	INTERGENIC
2L	7004290	2L_7004290_SNP [dm3] 2L_7004290_SNP [dm6]	C	A	2.431e^-4	0.544	INTRON uif	TF binding site BDTNP1_TFBS_dl
3L	23776227	3L_23776227_SNP [dm3] 3L_23783127_SNP [dm6]	G	C	2.432e^-4	0.544	INTERGENIC
2L	11490344	2L_11490344_SNP [dm3] 2L_11490344_SNP [dm6]	G	A	2.442e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6622812	3L_6622812_SNP [dm3] 3L_6629712_SNP [dm6]	T	C	2.444e^-4	0.544	INTRON GluRIA
3L	11813425	3L_11813425_SNP [dm3] 3L_11820325_SNP [dm6]	G	C	2.452e^-4	0.544	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	19195278	X_19195278_SNP [dm3] X_19301245_SNP [dm6]	T	A	2.454e^-4	0.544	DOWNSTREAM CG8051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	19195288	X_19195288_INS [dm3] X_19301255_INS [dm6]	T	TTCCATTATTAAATAATACT...	2.454e^-4	0.544	DOWNSTREAM CG8051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20214225	2R_20214225_SNP [dm3] 2R_24326702_SNP [dm6]	T	G	2.456e^-4	0.544	INTRON CR44810
2R	8891939	2R_8891939_SNP [dm3] 2R_13004434_SNP [dm6]	C	A	2.457e^-4	0.544	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8116880	3R_8116880_SNP [dm3] 3R_12291158_SNP [dm6]	G	C	2.459e^-4	0.544	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	2105606	2R_2105606_SNP [dm3] 2R_6218101_SNP [dm6]	G	A	2.462e^-4	0.544	INTRON bin3 & 1 other
2R	3344532	2R_3344532_SNP [dm3] 2R_7457027_SNP [dm6]	A	G	2.462e^-4	0.544	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	3571102	X_3571102_DEL [dm3] X_3677069_DEL [dm6]	AC	A	2.467e^-4	0.544	INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	21059292	2R_21059292_SNP [dm3] 2R_25171769_SNP [dm6]	A	G	2.468e^-4	0.544	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	8004798	3R_8004798_SNP [dm3] 3R_12179076_SNP [dm6]	C	A	2.470e^-4	0.544	INTERGENIC
2R	17097378	2R_17097378_SNP [dm3] 2R_21209873_SNP [dm6]	A	C	2.478e^-4	0.544	UTR_3_PRIME Glycogenin UPSTREAM CG44245 INTRON CG44245 & 1 other
3L	5416455	3L_5416455_SNP [dm3] 3L_5423355_SNP [dm6]	C	G	2.481e^-4	0.544	UPSTREAM CG34391 INTERGENIC
2L	14962685	2L_14962685_SNP [dm3] 2L_14962685_SNP [dm6]	T	C	2.481e^-4	0.544	INTRON CG42313
2R	12446068	2R_12446068_SNP [dm3] 2R_16558563_SNP [dm6]	T	C	2.487e^-4	0.544	DOWNSTREAM DAT & 1 other INTERGENIC
2R	12810346	2R_12810346_SNP [dm3] 2R_16922841_SNP [dm6]	G	T	2.494e^-4	0.544	INTERGENIC
2R	12824787	2R_12824787_SNP [dm3] 2R_16937282_SNP [dm6]	G	A	2.495e^-4	0.544	UPSTREAM CG43788 INTRON Pkc53E
3R	10634085	3R_10634085_SNP [dm3] 3R_14808363_SNP [dm6]	C	T	2.498e^-4	0.544	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10634091	3R_10634091_SNP [dm3] 3R_14808369_SNP [dm6]	G	A	2.498e^-4	0.544	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	2.504e^-4	0.544	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	2.504e^-4	0.544	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	2.504e^-4	0.544	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	2.504e^-4	0.544	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	2.504e^-4	0.544	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	2.504e^-4	0.544	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	2.504e^-4	0.544	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	2.504e^-4	0.544	SYNONYMOUS_CODING emb
2R	3344119	2R_3344119_SNP [dm3] 2R_7456614_SNP [dm6]	G	A	2.511e^-4	0.545	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10543653	3R_10543653_SNP [dm3] 3R_14717931_SNP [dm6]	G	A	2.528e^-4	0.548	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9956620	2R_9956620_SNP [dm3] 2R_14069115_SNP [dm6]	G	T	2.536e^-4	0.549	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5416514	3L_5416514_SNP [dm3] 3L_5423414_SNP [dm6]	G	A	2.543e^-4	0.55	UPSTREAM CG34391 INTERGENIC
3L	18751335	3L_18751335_SNP [dm3] 3L_18758235_SNP [dm6]	A	T	2.547e^-4	0.55	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	15139105	2L_15139105_MNP [dm3] 2L_15139105_MNP [dm6]	GTA	TCC	2.554e^-4	0.55	INTERGENIC
2R	8607236	2R_8607236_MNP [dm3] 2R_12719731_MNP [dm6]	GTT	AAC	2.557e^-4	0.55	INTRON CG42663
2R	12138490	2R_12138490_SNP [dm3] 2R_16250985_SNP [dm6]	T	A	2.560e^-4	0.55	INTRON CngA
2L	2309558	2L_2309558_SNP [dm3] 2L_2309558_SNP [dm6]	C	G	2.561e^-4	0.55	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
3R	6967600	3R_6967600_SNP [dm3] 3R_11141878_SNP [dm6]	A	C	2.565e^-4	0.55	INTERGENIC
2R	3047013	2R_3047013_SNP [dm3] 2R_7159508_SNP [dm6]	A	C	2.565e^-4	0.55	INTRON pk	enhancer mE1_CBP_Enhancers
3L	9594437	3L_9594437_SNP [dm3] 3L_9601337_SNP [dm6]	A	C	2.569e^-4	0.55	UPSTREAM CG3306 & 1 other DOWNSTREAM CG3222 INTERGENIC
3R	10545959	3R_10545959_SNP [dm3] 3R_14720237_SNP [dm6]	G	A	2.573e^-4	0.55	INTRON kibra	TF binding site BDTNP1_TFBS_dl
3R	11408402	3R_11408402_SNP [dm3] 3R_15582680_SNP [dm6]	C	G	2.574e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14150489	2R_14150489_SNP [dm3] 2R_18262984_SNP [dm6]	G	A	2.579e^-4	0.55	INTERGENIC
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	2.581e^-4	0.55	INTERGENIC
X	9597053	X_9597053_SNP [dm3] X_9703020_SNP [dm6]	G	A	2.582e^-4	0.55	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8796769	3R_8796769_SNP [dm3] 3R_12971047_SNP [dm6]	C	T	2.583e^-4	0.55	INTRON CG7381
3R	12031379	3R_12031379_DEL [dm3] 3R_16205657_DEL [dm6]	TCCATTAGTTC...	T	2.588e^-4	0.55	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6273662	3R_6273662_INS [dm3] 3R_10447940_INS [dm6]	C	CC	2.595e^-4	0.55	INTERGENIC
3R	7793803	3R_7793803_SNP [dm3] 3R_11968081_SNP [dm6]	C	A	2.597e^-4	0.55	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12800958	2R_12800958_SNP [dm3] 2R_16913453_SNP [dm6]	C	T	2.598e^-4	0.55	INTERGENIC
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	2.604e^-4	0.55	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	3488891	2L_3488891_SNP [dm3] 2L_3488891_SNP [dm6]	A	T	2.616e^-4	0.55	INTRON CG15414
X	5196405	X_5196405_SNP [dm3] X_5302372_SNP [dm6]	C	G	2.617e^-4	0.55	DOWNSTREAM CG3323 INTRON CG42749
2L	9838821	2L_9838821_SNP [dm3] 2L_9838821_SNP [dm6]	G	A	2.619e^-4	0.55	INTRON nAChRalpha6
2R	12140868	2R_12140868_SNP [dm3] 2R_16253363_SNP [dm6]	T	C	2.619e^-4	0.55	INTRON CngA
X	7778902	X_7778902_SNP [dm3] X_7884869_SNP [dm6]	C	T	2.621e^-4	0.55	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
2L	15139116	2L_15139116_SNP [dm3] 2L_15139116_SNP [dm6]	C	A	2.621e^-4	0.55	INTERGENIC
2R	1368004	2R_1368004_SNP [dm3] 2R_5480499_SNP [dm6]	G	C	2.622e^-4	0.55	INTRON CG30440
3R	11444343	3R_11444343_SNP [dm3] 3R_15618621_SNP [dm6]	A	T	2.624e^-4	0.55	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	2.626e^-4	0.55	INTERGENIC
3L	18453296	3L_18453296_SNP [dm3] 3L_18460196_SNP [dm6]	A	C	2.628e^-4	0.55	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2257346	3L_2257346_SNP [dm3] 3L_2257346_SNP [dm6]	C	G	2.634e^-4	0.55	START_GAINED CG1275 UTR_5_PRIME CG1275 UPSTREAM CG2034 & 1 other
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	2.634e^-4	0.55	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
2R	12150802	2R_12150802_SNP [dm3] 2R_16263297_SNP [dm6]	T	C	2.637e^-4	0.55	SYNONYMOUS_CODING fidipidine
3R	14845685	3R_14845685_SNP [dm3] 3R_19019963_SNP [dm6]	C	T	2.659e^-4	0.554	DOWNSTREAM gukh INTRON gukh
3L	14615690	3L_14615690_SNP [dm3] 3L_14622590_SNP [dm6]	C	T	2.662e^-4	0.554	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2R	8377325	2R_8377325_SNP [dm3] 2R_12489820_SNP [dm6]	A	T	2.665e^-4	0.554	SYNONYMOUS_CODING fdl
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	2.667e^-4	0.554	INTRON CG34355
2R	12116087	2R_12116087_SNP [dm3] 2R_16228582_SNP [dm6]	T	C	2.683e^-4	0.556	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10915916	X_10915916_SNP [dm3] X_11021883_SNP [dm6]	C	A	2.685e^-4	0.556	INTRON CG42339
3L	6865536	3L_6865536_SNP [dm3] 3L_6872436_SNP [dm6]	A	G	2.691e^-4	0.557	INTERGENIC
2L	11391617	2L_11391617_SNP [dm3] 2L_11391617_SNP [dm6]	C	T	2.696e^-4	0.557	INTRON CR43681	regulatory region REDfly_CRMs
3R	10659399	3R_10659399_SNP [dm3] 3R_14833677_SNP [dm6]	T	C	2.696e^-4	0.557	INTRON btsz
3R	3848259	3R_3848259_SNP [dm3] 3R_8022537_SNP [dm6]	T	C	2.701e^-4	0.557	INTRON CG2747
3R	17794131	3R_17794131_SNP [dm3] 3R_21968409_SNP [dm6]	T	C	2.704e^-4	0.557	INTRON Eip93F
3R	7806320	3R_7806320_SNP [dm3] 3R_11980598_SNP [dm6]	C	T	2.705e^-4	0.557	UPSTREAM CG18547 DOWNSTREAM CG12224 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12425841	2L_12425841_SNP [dm3] 2L_12425841_SNP [dm6]	G	A	2.706e^-4	0.557	SYNONYMOUS_CODING CG6405 DOWNSTREAM CG5446	TF binding site mE1_TFBS_HSA
3R	8588099	3R_8588099_SNP [dm3] 3R_12762377_SNP [dm6]	T	A	2.713e^-4	0.557	INTRON beat-Vc
3R	12142346	3R_12142346_SNP [dm3] 3R_16316624_SNP [dm6]	C	T	2.716e^-4	0.557	INTRON Sulf1
2R	16020141	2R_16020141_SNP [dm3] 2R_20132636_SNP [dm6]	C	T	2.722e^-4	0.558	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1081762	2L_1081762_SNP [dm3] 2L_1081762_SNP [dm6]	G	T	2.727e^-4	0.558	SYNONYMOUS_CODING Atg4a DOWNSTREAM ast	TF binding site mE1_TFBS_sens
2R	12138528	2R_12138528_SNP [dm3] 2R_16251023_SNP [dm6]	C	T	2.734e^-4	0.559	INTRON CngA
3L	6809071	3L_6809071_SNP [dm3] 3L_6815971_SNP [dm6]	A	G	2.738e^-4	0.559	INTERGENIC
2L	10074621	2L_10074621_SNP [dm3] 2L_10074621_SNP [dm6]	T	G	2.739e^-4	0.559	INTRON CG44153
3R	7771180	3R_7771180_SNP [dm3] 3R_11945458_SNP [dm6]	T	A	2.747e^-4	0.559	INTRON Cad87A
2R	19428327	2R_19428327_SNP [dm3] 2R_23540804_SNP [dm6]	G	A	2.747e^-4	0.559	UPSTREAM ppk3 DOWNSTREAM Gr59e INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	2.748e^-4	0.559	INTERGENIC
3R	20275786	3R_20275786_SNP [dm3] 3R_24450064_SNP [dm6]	C	T	2.752e^-4	0.559	INTRON nAChRalpha1
3R	6582693	3R_6582693_SNP [dm3] 3R_10756971_SNP [dm6]	T	A	2.752e^-4	0.559	INTRON CG31272 EXON CR45015
3R	20898756	3R_20898756_SNP [dm3] 3R_25073034_SNP [dm6]	G	A	2.756e^-4	0.559	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
X	5118394	X_5118394_SNP [dm3] X_5224361_SNP [dm6]	T	C	2.788e^-4	0.563	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	2.794e^-4	0.563	INTRON beat-Vc
2R	20300125	2R_20300125_SNP [dm3] 2R_24412602_SNP [dm6]	G	C	2.795e^-4	0.563	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15139145	2L_15139145_SNP [dm3] 2L_15139145_SNP [dm6]	A	G	2.799e^-4	0.563	INTERGENIC
3L	1530059	3L_1530059_SNP [dm3] 3L_1530059_SNP [dm6]	G	C	2.802e^-4	0.563	NON_SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
3L	8214437	3L_8214437_SNP [dm3] 3L_8221337_SNP [dm6]	T	G	2.807e^-4	0.563	UPSTREAM CG13678 INTERGENIC
3L	1276160	3L_1276160_SNP [dm3] 3L_1276160_SNP [dm6]	A	G	2.808e^-4	0.563	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
3R	7945377	3R_7945377_SNP [dm3] 3R_12119655_SNP [dm6]	C	T	2.809e^-4	0.563	INTERGENIC
X	15330472	X_15330472_SNP [dm3] X_15436439_SNP [dm6]	A	G	2.810e^-4	0.563	INTRON Cngl
3L	16023339	3L_16023339_SNP [dm3] 3L_16030239_SNP [dm6]	G	A	2.811e^-4	0.563	SYNONYMOUS_CODING Notum UPSTREAM mir-4941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20855684	3R_20855684_SNP [dm3] 3R_25029962_SNP [dm6]	A	G	2.813e^-4	0.563	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
3R	10634060	3R_10634060_DEL [dm3] 3R_14808338_DEL [dm6]	GTGGG	G	2.816e^-4	0.563	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12634196	3R_12634196_SNP [dm3] 3R_16808474_SNP [dm6]	A	C	2.821e^-4	0.563	UTR_3_PRIME abd-A
2R	15172026	2R_15172026_SNP [dm3] 2R_19284521_SNP [dm6]	T	A	2.821e^-4	0.563	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6590332	3R_6590332_SNP [dm3] 3R_10764610_SNP [dm6]	C	A	2.822e^-4	0.563	INTRON Cap-H2
2R	17571373	2R_17571373_SNP [dm3] 2R_21683868_SNP [dm6]	C	T	2.826e^-4	0.563	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8631644	X_8631644_SNP [dm3] X_8737611_SNP [dm6]	G	C	2.829e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	17768648	2R_17768648_SNP [dm3] 2R_21881143_SNP [dm6]	T	G	2.842e^-4	0.565	DOWNSTREAM PpN58A INTRON Fili
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	2.851e^-4	0.566	INTRON mAChR-A	TF binding site mE1_TFBS_cad
2L	263485	2L_263485_SNP [dm3] 2L_263485_SNP [dm6]	A	C	2.861e^-4	0.567	UTR_3_PRIME CG17075 DOWNSTREAM CR44219 INTRON CG3645	TF binding site mE1_TFBS_cad
3R	6559080	3R_6559080_SNP [dm3] 3R_10733358_SNP [dm6]	A	G	2.865e^-4	0.567	INTERGENIC
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	2.868e^-4	0.567	INTERGENIC
2R	15171997	2R_15171997_SNP [dm3] 2R_19284492_SNP [dm6]	T	G	2.870e^-4	0.567	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5038366	2R_5038366_SNP [dm3] 2R_9150861_SNP [dm6]	C	G	2.873e^-4	0.567	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
3L	12556619	3L_12556619_SNP [dm3] 3L_12563519_SNP [dm6]	T	G	2.873e^-4	0.567	INTRON sowah
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	2.879e^-4	0.567	UPSTREAM CG17292 INTRON CG17292
2R	13724788	2R_13724788_SNP [dm3] 2R_17837283_SNP [dm6]	G	A	2.882e^-4	0.567	INTRON grh
3R	15909618	3R_15909618_SNP [dm3] 3R_20083896_SNP [dm6]	T	C	2.883e^-4	0.567	INTERGENIC
3R	12243493	3R_12243493_SNP [dm3] 3R_16417771_SNP [dm6]	T	A	2.887e^-4	0.567	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_eve
3R	16578285	3R_16578285_SNP [dm3] 3R_20752563_SNP [dm6]	T	C	2.891e^-4	0.567	INTRON CG42322	TF binding site BDTNP1_TFBS_dl
2L	11919422	2L_11919422_SNP [dm3] 2L_11919422_SNP [dm6]	C	T	2.892e^-4	0.567	INTRON Pde1c
2L	15765759	2L_15765759_SNP [dm3] 2L_15765759_SNP [dm6]	C	G	2.895e^-4	0.567	UTR_3_PRIME CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	13252523	2L_13252523_SNP [dm3] 2L_13252523_SNP [dm6]	T	C	2.895e^-4	0.567	INTRON CG31728
3R	7967258	3R_7967258_SNP [dm3] 3R_12141536_SNP [dm6]	G	A	2.901e^-4	0.567	INTRON dpr15	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	2.904e^-4	0.567	INTERGENIC
3R	10634017	3R_10634017_SNP [dm3] 3R_14808295_SNP [dm6]	C	T	2.906e^-4	0.567	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6218653	2L_6218653_SNP [dm3] 2L_6218653_SNP [dm6]	A	C	2.913e^-4	0.567	INTERGENIC
3R	17670911	3R_17670911_SNP [dm3] 3R_21845189_SNP [dm6]	C	A	2.919e^-4	0.567	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
2R	10670427	2R_10670427_SNP [dm3] 2R_14782922_SNP [dm6]	G	A	2.923e^-4	0.567	INTRON kn
2R	3344122	2R_3344122_SNP [dm3] 2R_7456617_SNP [dm6]	A	G	2.925e^-4	0.567	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	4815548	X_4815548_SNP [dm3] X_4921515_SNP [dm6]	A	G	2.931e^-4	0.567	SYNONYMOUS_CODING CG6903 DOWNSTREAM CG44774	TF binding site mE1_TFBS_cad
3R	6973628	3R_6973628_SNP [dm3] 3R_11147906_SNP [dm6]	A	G	2.935e^-4	0.567	INTERGENIC
3L	10921534	3L_10921534_SNP [dm3] 3L_10928434_SNP [dm6]	T	G	2.937e^-4	0.567	INTERGENIC
X	14543118	X_14543118_SNP [dm3] X_14649085_SNP [dm6]	A	G	2.937e^-4	0.567	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3748395	2R_3748395_SNP [dm3] 2R_7860890_SNP [dm6]	A	T	2.939e^-4	0.567	INTRON Dgk
3L	19686942	3L_19686942_SNP [dm3] 3L_19693842_SNP [dm6]	T	A	2.939e^-4	0.567	INTRON verm
3R	12146351	3R_12146351_SNP [dm3] 3R_16320629_SNP [dm6]	T	A	2.940e^-4	0.567	UPSTREAM tRNA:F2:89BC INTRON Sulf1
3L	1282280	3L_1282280_SNP [dm3] 3L_1282280_SNP [dm6]	A	G	2.950e^-4	0.567	INTRON CG32333
2R	14515556	2R_14515556_SNP [dm3] 2R_18628051_SNP [dm6]	G	A	2.951e^-4	0.567	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14144913	3R_14144913_SNP [dm3] 3R_18319191_SNP [dm6]	G	C	2.958e^-4	0.567	INTRON CG31235
2L	4909386	2L_4909386_SNP [dm3] 2L_4909386_SNP [dm6]	G	A	2.961e^-4	0.567	SYNONYMOUS_CODING hoe1
3R	11950115	3R_11950115_SNP [dm3] 3R_16124393_SNP [dm6]	C	T	2.962e^-4	0.567	INTRON Sb
X	4437888	X_4437888_SNP [dm3] X_4543855_SNP [dm6]	C	T	2.962e^-4	0.567	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	3343561	2R_3343561_SNP [dm3] 2R_7456056_SNP [dm6]	A	C	2.964e^-4	0.567	SYNONYMOUS_CODING Inos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9980058	2R_9980058_SNP [dm3] 2R_14092553_SNP [dm6]	A	T	2.966e^-4	0.567	DOWNSTREAM CG42288 INTRON Prosap
3R	9722699	3R_9722699_SNP [dm3] 3R_13896977_SNP [dm6]	G	A	2.968e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	3560845	2R_3560845_SNP [dm3] 2R_7673340_SNP [dm6]	C	A	2.971e^-4	0.567	DOWNSTREAM mRpL52 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11813328	3L_11813328_SNP [dm3] 3L_11820228_SNP [dm6]	A	C	2.983e^-4	0.567	UPSTREAM CG5946 DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10634133	3R_10634133_SNP [dm3] 3R_14808411_SNP [dm6]	G	A	2.987e^-4	0.567	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3576606	2R_3576606_SNP [dm3] 2R_7689101_SNP [dm6]	A	T	2.987e^-4	0.567	INTRON CG1399
3R	13092679	3R_13092679_INS [dm3] 3R_17266957_INS [dm6]	A	AAATGA	2.991e^-4	0.567	INTERGENIC
2R	4525395	2R_4525395_INS [dm3] 2R_8637890_INS [dm6]	T	TAATAAT	2.991e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9607218	3L_9607218_SNP [dm3] 3L_9614118_SNP [dm6]	A	T	2.992e^-4	0.567	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	8377334	2R_8377334_SNP [dm3] 2R_12489829_SNP [dm6]	G	A	2.996e^-4	0.567	SYNONYMOUS_CODING fdl
2L	4930171	2L_4930171_SNP [dm3] 2L_4930171_SNP [dm6]	A	G	3.002e^-4	0.567	INTRON hoe1
3R	8815110	3R_8815110_SNP [dm3] 3R_12989388_SNP [dm6]	G	A	3.002e^-4	0.567	NON_SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
2L	1359739	2L_1359739_SNP [dm3] 2L_1359739_SNP [dm6]	G	A	3.004e^-4	0.567	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
3L	18271537	3L_18271537_SNP [dm3] 3L_18278437_SNP [dm6]	T	C	3.008e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	14398542	X_14398542_SNP [dm3] X_14504509_SNP [dm6]	A	G	3.011e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	3.012e^-4	0.567	INTRON Cad87A
2L	2287380	2L_2287380_SNP [dm3] 2L_2287380_SNP [dm6]	T	C	3.013e^-4	0.567	STOP_LOST CG42658 UPSTREAM CG31681
2L	10169167	2L_10169167_SNP [dm3] 2L_10169167_SNP [dm6]	T	A	3.014e^-4	0.567	INTRON CG44153
3R	8105599	3R_8105599_SNP [dm3] 3R_12279877_SNP [dm6]	A	T	3.019e^-4	0.567	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	7773277	3R_7773277_SNP [dm3] 3R_11947555_SNP [dm6]	T	A	3.020e^-4	0.567	UTR_5_PRIME Cad87A	TF binding site BDTNP1_TFBS_dl
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	3.022e^-4	0.567	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.873e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	1.922e-05
In_3R_K	1.827e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	18.2764	0.0001
In_3R_K	17.0056	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2168 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	2.236e^-14	4.089e^-8	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	4.360e^-14	4.089e^-8	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	1.866e^-13	1.166e^-7	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	2.728e^-13	1.279e^-7	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	3.518e^-13	1.320e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	8.890e^-13	2.779e^-7	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	1.112e^-12	2.981e^-7	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	2.669e^-12	6.257e^-7	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	1.315e^-11	2.740e^-6	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	3.752e^-11	7.037e^-6	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	1.946e^-10	3.318e^-5	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	8.477e^-10	1.325e^-4	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	1.030e^-9	1.486e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	2.995e^-9	3.516e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.133e^-9	3.516e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	3.187e^-9	3.516e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	3.187e^-9	3.516e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	3.939e^-9	4.079e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	4.132e^-9	4.079e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	5.148e^-9	4.828e^-4	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	6.616e^-9	5.909e^-4	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	7.648e^-9	6.520e^-4	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	1.003e^-8	8.178e^-4	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	1.602e^-8	0.001	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	2.126e^-8	0.002	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	2.553e^-8	0.002	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	3.490e^-8	0.002	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	3.714e^-8	0.002	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	4.161e^-8	0.003	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	5.993e^-8	0.004	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	6.921e^-8	0.004	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	7.473e^-8	0.004	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	8.448e^-8	0.005	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	8.450e^-8	0.005	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	1.389e^-7	0.007	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	1.896e^-7	0.01	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	2.240e^-7	0.011	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	2.583e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	2.583e^-7	0.012	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	3.143e^-7	0.015	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	3.357e^-7	0.015	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	3.401e^-7	0.015	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	3.888e^-7	0.017	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	3.901e^-7	0.017	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	4.052e^-7	0.017	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	4.173e^-7	0.017	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8512026	2L_8512026_SNP [dm3] 2L_8512026_SNP [dm6]	G	A	4.771e^-7	0.019	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	4.999e^-7	0.02	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	5.420e^-7	0.021	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	5.630e^-7	0.021	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	5.765e^-7	0.021	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	6.238e^-7	0.022	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	8.730e^-7	0.031	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	9.319e^-7	0.032	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8545652	2L_8545652_SNP [dm3] 2L_8545652_SNP [dm6]	A	G	9.393e^-7	0.032	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	1.149e^-6	0.038	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	1.302e^-6	0.043	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	1.358e^-6	0.044	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	1.442e^-6	0.046	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	1.617e^-6	0.051	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	1.941e^-6	0.06	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.987e^-6	0.06	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	2.003e^-6	0.06	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	2.370e^-6	0.069	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	2.481e^-6	0.07	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	2.502e^-6	0.07	INTRON CG42540
2R	15659776	2R_15659776_SNP [dm3] 2R_19772271_SNP [dm6]	C	T	2.516e^-6	0.07	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26907593	3R_26907593_DEL [dm3] 3R_31081871_DEL [dm6]	CTTATAAT	A	2.839e^-6	0.078	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14760140	2R_14760140_DEL [dm3] 2R_18872635_DEL [dm6]	CATAATT	C	2.877e^-6	0.078	INTERGENIC
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	3.180e^-6	0.085	UTR_5_PRIME CG7201
3R	19066316	3R_19066316_DEL [dm3] 3R_23240594_DEL [dm6]	CC	C	3.374e^-6	0.089	UPSTREAM CG4467 INTRON CG4467
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	3.781e^-6	0.098	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8506924	2L_8506924_SNP [dm3] 2L_8506924_SNP [dm6]	G	A	3.802e^-6	0.098	UPSTREAM Dh31 INTERGENIC
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	3.901e^-6	0.099	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	4.338e^-6	0.108	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19066076	3R_19066076_SNP [dm3] 3R_23240354_SNP [dm6]	G	A	4.564e^-6	0.112	UPSTREAM CG4467 INTRON CG4467
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	4.772e^-6	0.112	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	4.815e^-6	0.112	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11878211	2R_11878211_SNP [dm3] 2R_15990706_SNP [dm6]	A	G	4.844e^-6	0.112	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11880191	2R_11880191_SNP [dm3] 2R_15992686_SNP [dm6]	C	G	4.877e^-6	0.112	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	4.887e^-6	0.112	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	4.900e^-6	0.112	INTERGENIC
3L	12630119	3L_12630119_SNP [dm3] 3L_12637019_SNP [dm6]	G	A	5.143e^-6	0.115	INTRON CR32111
3R	19066109	3R_19066109_SNP [dm3] 3R_23240387_SNP [dm6]	C	G	5.164e^-6	0.115	UPSTREAM CG4467 INTRON CG4467
3R	26907606	3R_26907606_SNP [dm3] 3R_31081884_SNP [dm6]	T	A	5.350e^-6	0.117	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	5.374e^-6	0.117	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	5.512e^-6	0.119	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	5.751e^-6	0.123	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16841934	X_16841934_SNP [dm3] X_16947901_SNP [dm6]	T	G	6.545e^-6	0.136	DOWNSTREAM CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl
2R	16076213	2R_16076213_SNP [dm3] 2R_20188708_SNP [dm6]	A	G	6.548e^-6	0.136	INTERGENIC
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	6.717e^-6	0.138	INTRON 5-HT1A
3R	19066082	3R_19066082_SNP [dm3] 3R_23240360_SNP [dm6]	G	T	6.902e^-6	0.141	UPSTREAM CG4467 INTRON CG4467
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	7.047e^-6	0.142	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	7.444e^-6	0.149	INTRON CG30463
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	7.619e^-6	0.15	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12630105	3L_12630105_SNP [dm3] 3L_12637005_SNP [dm6]	A	T	7.861e^-6	0.152	INTRON CR32111
3L	12630107	3L_12630107_SNP [dm3] 3L_12637007_SNP [dm6]	A	T	7.861e^-6	0.152	INTRON CR32111
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	8.154e^-6	0.156	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	8.562e^-6	0.16	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	19066119	3R_19066119_SNP [dm3] 3R_23240397_SNP [dm6]	T	C	8.632e^-6	0.16	UPSTREAM CG4467 INTRON CG4467
X	14033535	X_14033535_INS [dm3] X_14139502_INS [dm6]	T	TT	8.675e^-6	0.16	INTERGENIC
3L	12630112	3L_12630112_SNP [dm3] 3L_12637012_SNP [dm6]	T	G	8.718e^-6	0.16	INTRON CR32111
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	9.097e^-6	0.165	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	19066093	3R_19066093_SNP [dm3] 3R_23240371_SNP [dm6]	T	G	9.161e^-6	0.165	UPSTREAM CG4467 INTRON CG4467
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	9.664e^-6	0.173	INTERGENIC
3L	12630150	3L_12630150_SNP [dm3] 3L_12637050_SNP [dm6]	A	C	1.025e^-5	0.181	INTRON CR32111
2L	8539867	2L_8539867_SNP [dm3] 2L_8539867_SNP [dm6]	G	A	1.044e^-5	0.183	INTRON CG17834
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	1.124e^-5	0.195	INTERGENIC	regulatory region REDfly_CRMs
2R	14764439	2R_14764439_SNP [dm3] 2R_18876934_SNP [dm6]	C	T	1.185e^-5	0.204	INTERGENIC
3L	12630180	3L_12630180_SNP [dm3] 3L_12637080_SNP [dm6]	A	T	1.266e^-5	0.214	INTRON CR32111
3L	4891182	3L_4891182_SNP [dm3] 3L_4891182_SNP [dm6]	A	T	1.275e^-5	0.214	SYNONYMOUS_CODING CG17150
2L	8533459	2L_8533459_SNP [dm3] 2L_8533459_SNP [dm6]	A	G	1.298e^-5	0.214	INTRON CG17834	TF binding site mE1_TFBS_cad
2L	8508450	2L_8508450_SNP [dm3] 2L_8508450_SNP [dm6]	A	C	1.299e^-5	0.214	DOWNSTREAM CG13096 INTERGENIC
3R	19066117	3R_19066117_SNP [dm3] 3R_23240395_SNP [dm6]	C	T	1.302e^-5	0.214	UPSTREAM CG4467 INTRON CG4467
2R	14916259	2R_14916259_SNP [dm3] 2R_19028754_SNP [dm6]	T	C	1.360e^-5	0.215	NON_SYNONYMOUS_CODING 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15602894	2R_15602894_SNP [dm3] 2R_19715389_SNP [dm6]	A	T	1.360e^-5	0.215	UPSTREAM tRNA:CR30215 DOWNSTREAM CG8517 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15993126	2R_15993126_SNP [dm3] 2R_20105621_SNP [dm6]	G	C	1.360e^-5	0.215	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	12450599	2R_12450599_SNP [dm3] 2R_16563094_SNP [dm6]	G	A	1.363e^-5	0.215	INTRON DAT
2R	13800451	2R_13800451_SNP [dm3] 2R_17912946_SNP [dm6]	A	G	1.363e^-5	0.215	INTRON Elk
3R	19066142	3R_19066142_SNP [dm3] 3R_23240420_SNP [dm6]	A	G	1.417e^-5	0.215	UPSTREAM CG4467 INTRON CG4467
2R	12808661	2R_12808661_SNP [dm3] 2R_16921156_SNP [dm6]	T	G	1.438e^-5	0.215	INTERGENIC
2R	14552666	2R_14552666_SNP [dm3] 2R_18665161_SNP [dm6]	T	C	1.459e^-5	0.215	INTRON CG33136	TF binding site mE1_TFBS_sens
2R	15205344	2R_15205344_SNP [dm3] 2R_19317839_SNP [dm6]	G	C	1.464e^-5	0.215	INTRON Rgk1
3L	12630155	3L_12630155_SNP [dm3] 3L_12637055_SNP [dm6]	A	G	1.471e^-5	0.215	INTRON CR32111
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	1.483e^-5	0.215	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	1.492e^-5	0.215	INTERGENIC
3L	7097362	3L_7097362_SNP [dm3] 3L_7104262_SNP [dm6]	T	G	1.512e^-5	0.215	INTRON form3
2R	11880074	2R_11880074_SNP [dm3] 2R_15992569_SNP [dm6]	C	T	1.512e^-5	0.215	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12050044	3L_12050044_SNP [dm3] 3L_12056944_SNP [dm6]	A	G	1.521e^-5	0.215	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19066161	3R_19066161_SNP [dm3] 3R_23240439_SNP [dm6]	A	G	1.529e^-5	0.215	UPSTREAM CG4467 INTRON CG4467
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	1.538e^-5	0.215	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	1.538e^-5	0.215	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	1.538e^-5	0.215	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	1.538e^-5	0.215	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	1.574e^-5	0.217	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7442983	2L_7442983_SNP [dm3] 2L_7442983_SNP [dm6]	C	G	1.579e^-5	0.217	UPSTREAM CG5973 INTRON CG5973
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	1.618e^-5	0.217	INTRON Rgk1
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	1.621e^-5	0.217	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	15676669	2R_15676669_SNP [dm3] 2R_19789164_SNP [dm6]	T	C	1.641e^-5	0.217	EXON CR45231
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	1.644e^-5	0.217	INTRON hppy
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	1.655e^-5	0.217	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	1.668e^-5	0.217	INTRON CG42524
2R	15205290	2R_15205290_SNP [dm3] 2R_19317785_SNP [dm6]	T	C	1.668e^-5	0.217	INTRON Rgk1
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	1.668e^-5	0.217	INTRON CG10444	TF binding site mE1_TFBS_cad
2R	11878273	2R_11878273_SNP [dm3] 2R_15990768_SNP [dm6]	A	T	1.683e^-5	0.217	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	1.703e^-5	0.217	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	1.703e^-5	0.217	INTRON dpr13
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	1.724e^-5	0.219	INTRON Elk
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	1.767e^-5	0.221	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11878215	2R_11878215_SNP [dm3] 2R_15990710_SNP [dm6]	T	C	1.773e^-5	0.221	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12630056	3L_12630056_DEL [dm3] 3L_12636956_DEL [dm6]	AAACGGACTATAAAGTTCAA...	A	1.792e^-5	0.221	INTRON CR32111
2L	8506609	2L_8506609_SNP [dm3] 2L_8506609_SNP [dm6]	G	A	1.794e^-5	0.221	INTRON Dh31
2R	9756529	2R_9756529_SNP [dm3] 2R_13869024_SNP [dm6]	C	G	1.808e^-5	0.222	INTRON shot
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	1.848e^-5	0.225	INTRON CG17834
2R	8457068	2R_8457068_SNP [dm3] 2R_12569563_SNP [dm6]	T	C	1.858e^-5	0.225	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15801003	3R_15801003_SNP [dm3] 3R_19975281_SNP [dm6]	C	A	1.949e^-5	0.232	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
2L	879957	2L_879957_SNP [dm3] 2L_879957_SNP [dm6]	G	A	1.966e^-5	0.232	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	1.974e^-5	0.232	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15361948	2R_15361948_SNP [dm3] 2R_19474443_SNP [dm6]	T	C	1.978e^-5	0.232	INTRON par-1
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.988e^-5	0.232	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.988e^-5	0.232	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	12050065	3L_12050065_SNP [dm3] 3L_12056965_SNP [dm6]	C	A	2.033e^-5	0.235	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	2.039e^-5	0.235	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	9465709	2L_9465709_SNP [dm3] 2L_9465709_SNP [dm6]	A	G	2.060e^-5	0.236	INTERGENIC
2R	13867810	2R_13867810_SNP [dm3] 2R_17980305_SNP [dm6]	T	C	2.072e^-5	0.236	INTRON dpr13
3R	19066073	3R_19066073_SNP [dm3] 3R_23240351_SNP [dm6]	T	C	2.119e^-5	0.239	UPSTREAM CG4467 INTRON CG4467
2R	8410929	2R_8410929_SNP [dm3] 2R_12523424_SNP [dm6]	T	C	2.160e^-5	0.243	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	2.174e^-5	0.243	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8529353	2L_8529353_DEL [dm3] 2L_8529353_DEL [dm6]	ATAAAAA	A	2.196e^-5	0.243	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_prd
3R	19066128	3R_19066128_SNP [dm3] 3R_23240406_SNP [dm6]	T	A	2.208e^-5	0.243	UPSTREAM CG4467 INTRON CG4467
3L	12050085	3L_12050085_SNP [dm3] 3L_12056985_SNP [dm6]	G	A	2.216e^-5	0.243	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11870835	2R_11870835_SNP [dm3] 2R_15983330_SNP [dm6]	G	A	2.261e^-5	0.247	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
3R	19066135	3R_19066135_SNP [dm3] 3R_23240413_SNP [dm6]	A	G	2.370e^-5	0.254	UPSTREAM CG4467 INTRON CG4467
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	2.381e^-5	0.254	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	2.403e^-5	0.254	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	2.403e^-5	0.254	INTERGENIC
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	2.420e^-5	0.254	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	17905597	3R_17905597_SNP [dm3] 3R_22079875_SNP [dm6]	T	A	2.432e^-5	0.254	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
3L	13300804	3L_13300804_SNP [dm3] 3L_13307704_SNP [dm6]	C	A	2.436e^-5	0.254	INTERGENIC
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	2.442e^-5	0.254	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18622620	2L_18622620_SNP [dm3] 2L_18622620_SNP [dm6]	C	T	2.471e^-5	0.254	INTRON MESR3
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	2.488e^-5	0.254	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
2R	13547629	2R_13547629_SNP [dm3] 2R_17660124_SNP [dm6]	T	C	2.491e^-5	0.254	INTRON CCHa1-R
3L	12630109	3L_12630109_SNP [dm3] 3L_12637009_SNP [dm6]	C	T	2.495e^-5	0.254	INTRON CR32111
2R	14784794	2R_14784794_SNP [dm3] 2R_18897289_SNP [dm6]	A	C	2.511e^-5	0.255	INTRON sano
X	14265072	X_14265072_DEL [dm3] X_14371039_DEL [dm6]	GCTGTAAATCTGG...	G	2.536e^-5	0.256	INTRON dpr8
2R	11879824	2R_11879824_SNP [dm3] 2R_15992319_SNP [dm6]	T	G	2.552e^-5	0.256	UTR_5_PRIME Pex11 UPSTREAM CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	7720065	2R_7720065_SNP [dm3] 2R_11832560_SNP [dm6]	T	C	2.566e^-5	0.256	INTRON Sobp	TF binding site mE1_TFBS_HSA
3L	12630166	3L_12630166_SNP [dm3] 3L_12637066_SNP [dm6]	A	C	2.583e^-5	0.256	INTRON CR32111
2R	3785393	2R_3785393_SNP [dm3] 2R_7897888_SNP [dm6]	G	C	2.591e^-5	0.256	INTRON CG30377
3R	19066061	3R_19066061_SNP [dm3] 3R_23240339_SNP [dm6]	A	G	2.604e^-5	0.256	UPSTREAM CG4467 INTRON CG4467
2R	11879188	2R_11879188_SNP [dm3] 2R_15991683_SNP [dm6]	G	A	2.642e^-5	0.258	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	5035443	2L_5035443_SNP [dm3] 2L_5035443_SNP [dm6]	G	A	2.665e^-5	0.259	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4626885	2R_4626885_SNP [dm3] 2R_8739380_SNP [dm6]	G	T	2.709e^-5	0.26	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	3785360	2R_3785360_SNP [dm3] 2R_7897855_SNP [dm6]	G	A	2.726e^-5	0.26	INTRON CG30377
X	540297	X_540297_SNP [dm3] X_646264_SNP [dm6]	C	T	2.729e^-5	0.26	UTR_3_PRIME CG13367	TF binding site BDTNP1_TFBS_dl
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	2.735e^-5	0.26	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	2.808e^-5	0.266	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	2.867e^-5	0.27	INTERGENIC
2L	8523537	2L_8523537_SNP [dm3] 2L_8523537_SNP [dm6]	C	A	2.921e^-5	0.274	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	2.932e^-5	0.274	INTERGENIC
3L	10349544	3L_10349544_SNP [dm3] 3L_10356444_SNP [dm6]	A	T	2.966e^-5	0.275	INTRON CR44327
2L	18893458	2L_18893458_SNP [dm3] 2L_18893458_SNP [dm6]	A	C	2.973e^-5	0.275	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13200624	3L_13200624_SNP [dm3] 3L_13207524_SNP [dm6]	T	C	3.044e^-5	0.278	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	3.052e^-5	0.278	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3L	12050039	3L_12050039_INS [dm3] 3L_12056939_INS [dm6]	TT	AAG	3.060e^-5	0.278	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13920091	2R_13920091_SNP [dm3] 2R_18032586_SNP [dm6]	T	A	3.064e^-5	0.278	INTERGENIC
3L	8040305	3L_8040305_SNP [dm3] 3L_8047205_SNP [dm6]	C	T	3.082e^-5	0.278	INTRON nmo	TF binding site mE1_TFBS_cad
2R	12251727	2R_12251727_SNP [dm3] 2R_16364222_SNP [dm6]	A	G	3.097e^-5	0.278	UTR_5_PRIME CG15711 DOWNSTREAM CG6262
X	5698584	X_5698584_INS [dm3] X_5804551_INS [dm6]	G	GCTTTTGG	3.164e^-5	0.283	UPSTREAM Cpr5C INTERGENIC
3L	12630168	3L_12630168_SNP [dm3] 3L_12637068_SNP [dm6]	C	T	3.190e^-5	0.283	INTRON CR32111
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	3.204e^-5	0.283	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	3.223e^-5	0.284	INTRON Lip2 & 1 other
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	3.244e^-5	0.284	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12050013	3L_12050013_SNP [dm3] 3L_12056913_SNP [dm6]	C	T	3.290e^-5	0.286	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14992538	3L_14992538_SNP [dm3] 3L_14999438_SNP [dm6]	A	G	3.290e^-5	0.286	UPSTREAM Prosbeta2 INTRON mRpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8541841	2L_8541841_SNP [dm3] 2L_8541841_SNP [dm6]	A	G	3.334e^-5	0.288	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10703661	2L_10703661_SNP [dm3] 2L_10703661_SNP [dm6]	G	A	3.420e^-5	0.294	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2R	12562628	2R_12562628_SNP [dm3] 2R_16675123_SNP [dm6]	T	C	3.443e^-5	0.295	INTRON CG30463
3L	12050010	3L_12050010_SNP [dm3] 3L_12056910_SNP [dm6]	A	C	3.565e^-5	0.303	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050072	3L_12050072_SNP [dm3] 3L_12056972_SNP [dm6]	T	C	3.565e^-5	0.303	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	3.633e^-5	0.307	INTRON slo
2R	12231191	2R_12231191_SNP [dm3] 2R_16343686_SNP [dm6]	T	A	3.713e^-5	0.31	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	3.745e^-5	0.31	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	3.783e^-5	0.31	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	3.786e^-5	0.31	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	3.786e^-5	0.31	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	17158006	3R_17158006_SNP [dm3] 3R_21332284_SNP [dm6]	C	T	3.795e^-5	0.31	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3777346	2R_3777346_SNP [dm3] 2R_7889841_SNP [dm6]	C	T	3.800e^-5	0.31	UPSTREAM CG30377 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5516710	2L_5516710_SNP [dm3] 2L_5516710_SNP [dm6]	T	G	3.801e^-5	0.31	INTERGENIC
3R	19066092	3R_19066092_SNP [dm3] 3R_23240370_SNP [dm6]	G	A	3.815e^-5	0.31	UPSTREAM CG4467 INTRON CG4467
2R	15690713	2R_15690713_SNP [dm3] 2R_19803208_SNP [dm6]	C	G	3.849e^-5	0.311	DOWNSTREAM tRNA:K2:56EF INTERGENIC
2R	11799040	2R_11799040_SNP [dm3] 2R_15911535_SNP [dm6]	C	T	3.965e^-5	0.319	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	3.991e^-5	0.319	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8509107	2L_8509107_SNP [dm3] 2L_8509107_SNP [dm6]	G	C	4.001e^-5	0.319	UTR_3_PRIME CG13096 DOWNSTREAM CG13096
2R	12172662	2R_12172662_SNP [dm3] 2R_16285157_SNP [dm6]	C	G	4.072e^-5	0.324	SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728	TF binding site mE1_TFBS_sens
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	4.107e^-5	0.324	INTERGENIC
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	4.140e^-5	0.324	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	11774243	3R_11774243_SNP [dm3] 3R_15948521_SNP [dm6]	G	A	4.153e^-5	0.324	INTRON Sap47
2L	8540528	2L_8540528_SNP [dm3] 2L_8540528_SNP [dm6]	C	T	4.160e^-5	0.324	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	5389172	2L_5389172_SNP [dm3] 2L_5389172_SNP [dm6]	A	G	4.166e^-5	0.324	DOWNSTREAM CR44745 INTERGENIC
3L	12050021	3L_12050021_SNP [dm3] 3L_12056921_SNP [dm6]	T	C	4.212e^-5	0.326	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5389274	2L_5389274_SNP [dm3] 2L_5389274_SNP [dm6]	T	A	4.220e^-5	0.326	DOWNSTREAM CR44745 INTERGENIC
3L	12050003	3L_12050003_SNP [dm3] 3L_12056903_SNP [dm6]	T	A	4.240e^-5	0.326	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	4.292e^-5	0.328	INTRON hoe1
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	4.306e^-5	0.328	INTERGENIC
2L	2614707	2L_2614707_SNP [dm3] 2L_2614707_SNP [dm6]	A	T	4.317e^-5	0.328	INTERGENIC
3L	7277226	3L_7277226_SNP [dm3] 3L_7284126_SNP [dm6]	A	G	4.448e^-5	0.336	INTRON unc-13-4A
2L	5502657	2L_5502657_SNP [dm3] 2L_5502657_SNP [dm6]	T	C	4.455e^-5	0.336	INTERGENIC
2L	8510992	2L_8510992_SNP [dm3] 2L_8510992_SNP [dm6]	G	T	4.482e^-5	0.336	SYNONYMOUS_CODING CG13096	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	4.596e^-5	0.343	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12050127	3L_12050127_SNP [dm3] 3L_12057027_SNP [dm6]	T	A	4.686e^-5	0.349	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	4.745e^-5	0.35	INTRON CR44833	regulatory region REDfly_CRMs
2R	10201246	2R_10201246_SNP [dm3] 2R_14313741_SNP [dm6]	G	C	4.761e^-5	0.35	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17746236	X_17746236_SNP [dm3] X_17852203_SNP [dm6]	C	A	4.763e^-5	0.35	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site mE1_TFBS_sens
2R	11334294	2R_11334294_SNP [dm3] 2R_15446789_SNP [dm6]	G	T	4.796e^-5	0.351	INTRON CG43729
2L	3072980	2L_3072980_SNP [dm3] 2L_3072980_SNP [dm6]	T	G	4.828e^-5	0.352	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12050043	3L_12050043_SNP [dm3] 3L_12056943_SNP [dm6]	C	G	4.847e^-5	0.352	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050022	3L_12050022_SNP [dm3] 3L_12056922_SNP [dm6]	T	G	4.971e^-5	0.359	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6695943	2L_6695943_SNP [dm3] 2L_6695943_SNP [dm6]	G	A	4.971e^-5	0.359	INTRON Tsp
3L	4579250	3L_4579250_SNP [dm3] 3L_4579250_SNP [dm6]	A	T	4.996e^-5	0.359	INTRON CG42540
2R	12562635	2R_12562635_SNP [dm3] 2R_16675130_SNP [dm6]	T	C	5.033e^-5	0.36	INTRON CG30463
3R	25346411	3R_25346411_SNP [dm3] 3R_29520689_SNP [dm6]	A	C	5.049e^-5	0.36	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15690575	2R_15690575_SNP [dm3] 2R_19803070_SNP [dm6]	C	T	5.084e^-5	0.361	DOWNSTREAM tRNA:K2:56EF INTERGENIC
3R	23150192	3R_23150192_INS [dm3] 3R_27324470_INS [dm6]	C	CGGATGGAC	5.105e^-5	0.361	INTERGENIC
2R	13860446	2R_13860446_SNP [dm3] 2R_17972941_SNP [dm6]	T	C	5.141e^-5	0.363	INTERGENIC
3L	14174950	3L_14174950_SNP [dm3] 3L_14181850_SNP [dm6]	C	T	5.195e^-5	0.364	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7443026	2L_7443026_SNP [dm3] 2L_7443026_SNP [dm6]	C	T	5.205e^-5	0.364	UPSTREAM CG5973 INTRON CG5973
3R	14458024	3R_14458024_SNP [dm3] 3R_18632302_SNP [dm6]	C	A	5.231e^-5	0.364	INTRON qin & 1 other
2R	15983331	2R_15983331_SNP [dm3] 2R_20095826_SNP [dm6]	G	A	5.252e^-5	0.364	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	5.259e^-5	0.364	INTRON Adk1
2R	13023236	2R_13023236_SNP [dm3] 2R_17135731_SNP [dm6]	T	G	5.436e^-5	0.375	UPSTREAM Gbp DOWNSTREAM CG11400 EXON CR44391
3L	4891371	3L_4891371_SNP [dm3] 3L_4891371_SNP [dm6]	C	T	5.452e^-5	0.375	SYNONYMOUS_CODING CG17150
3R	19066328	3R_19066328_DEL [dm3] 3R_23240606_DEL [dm6]	CCTC	C	5.532e^-5	0.378	UPSTREAM CG4467 INTRON CG4467
2L	3283270	2L_3283270_SNP [dm3] 2L_3283270_SNP [dm6]	T	A	5.536e^-5	0.378	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10939518	2L_10939518_SNP [dm3] 2L_10939518_SNP [dm6]	A	G	5.557e^-5	0.378	INTRON dpr2
3L	18037846	3L_18037846_SNP [dm3] 3L_18044746_SNP [dm6]	T	A	5.609e^-5	0.379	DOWNSTREAM CG42393 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18152606	3L_18152606_SNP [dm3] 3L_18159506_SNP [dm6]	C	A	5.617e^-5	0.379	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	5.665e^-5	0.381	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	5.778e^-5	0.387	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	5.795e^-5	0.387	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	5.820e^-5	0.387	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
3L	1357320	3L_1357320_SNP [dm3] 3L_1357320_SNP [dm6]	A	G	5.898e^-5	0.388	INTRON Ptp61F
2L	8537937	2L_8537937_SNP [dm3] 2L_8537937_SNP [dm6]	T	A	5.923e^-5	0.388	DOWNSTREAM CG17834 INTRON CG17834
3R	26471009	3R_26471009_SNP [dm3] 3R_30645287_SNP [dm6]	G	A	5.927e^-5	0.388	SPLICE_SITE_REGION CG31013 SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
3L	12050047	3L_12050047_SNP [dm3] 3L_12056947_SNP [dm6]	G	C	5.942e^-5	0.388	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8736471	2R_8736471_SNP [dm3] 2R_12848966_SNP [dm6]	C	G	5.943e^-5	0.388	UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2L	18622581	2L_18622581_SNP [dm3] 2L_18622581_SNP [dm6]	G	T	5.964e^-5	0.388	INTRON MESR3
3R	16977816	3R_16977816_SNP [dm3] 3R_21152094_SNP [dm6]	C	T	6.091e^-5	0.395	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	8507338	2L_8507338_SNP [dm3] 2L_8507338_SNP [dm6]	G	C	6.128e^-5	0.396	UPSTREAM Dh31 INTERGENIC
X	18630741	X_18630741_SNP [dm3] X_18736708_SNP [dm6]	A	T	6.157e^-5	0.396	INTERGENIC
3R	15785404	3R_15785404_SNP [dm3] 3R_19959682_SNP [dm6]	A	T	6.161e^-5	0.396	INTRON Hs6st
2R	19342897	2R_19342897_SNP [dm3] 2R_23455374_SNP [dm6]	C	T	6.217e^-5	0.398	INTRON CG43795
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	6.275e^-5	0.4	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8507391	2L_8507391_SNP [dm3] 2L_8507391_SNP [dm6]	T	A	6.288e^-5	0.4	UPSTREAM Dh31 INTERGENIC
2L	776303	2L_776303_SNP [dm3] 2L_776303_SNP [dm6]	C	A	6.361e^-5	0.402	UPSTREAM CG13946 INTERGENIC
3L	16873394	3L_16873394_SNP [dm3] 3L_16880294_SNP [dm6]	A	G	6.372e^-5	0.402	DOWNSTREAM CG32170 INTRON Lmpt
3L	8040286	3L_8040286_SNP [dm3] 3L_8047186_SNP [dm6]	G	C	6.399e^-5	0.403	INTRON nmo	TF binding site mE1_TFBS_cad
2L	8528677	2L_8528677_SNP [dm3] 2L_8528677_SNP [dm6]	A	T	6.531e^-5	0.41	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3L	8288340	3L_8288340_SNP [dm3] 3L_8295240_SNP [dm6]	G	A	6.704e^-5	0.419	UTR_5_PRIME CG7201
2R	11878735	2R_11878735_SNP [dm3] 2R_15991230_SNP [dm6]	C	G	6.769e^-5	0.421	UTR_5_PRIME CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	6.794e^-5	0.421	INTRON CG17834
3L	8265299	3L_8265299_SNP [dm3] 3L_8272199_SNP [dm6]	G	T	6.798e^-5	0.421	INTRON Dscam4	TF binding site mE1_TFBS_cad
2L	8509116	2L_8509116_SNP [dm3] 2L_8509116_SNP [dm6]	C	T	6.981e^-5	0.431	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2R	12479603	2R_12479603_SNP [dm3] 2R_16592098_SNP [dm6]	T	A	7.013e^-5	0.431	INTRON CG8306
3L	4579202	3L_4579202_SNP [dm3] 3L_4579202_SNP [dm6]	A	T	7.102e^-5	0.435	INTRON CG42540
3R	12452771	3R_12452771_INS [dm3] 3R_16627049_INS [dm6]	C	CAGATGGCTTAGGCAC...	7.122e^-5	0.435	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	7.196e^-5	0.437	INTRON CG17834	TF binding site mE1_TFBS_cad
2L	7140774	2L_7140774_SNP [dm3] 2L_7140774_SNP [dm6]	G	C	7.230e^-5	0.437	INTRON Pvf3
2L	5389301	2L_5389301_SNP [dm3] 2L_5389301_SNP [dm6]	G	A	7.232e^-5	0.437	DOWNSTREAM CR44745 INTERGENIC
2R	6568572	2R_6568572_SNP [dm3] 2R_10681067_SNP [dm6]	C	A	7.254e^-5	0.437	INTRON stan	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	3686125	2L_3686125_SNP [dm3] 2L_3686125_SNP [dm6]	T	C	7.295e^-5	0.439	INTRON CG34340
3L	8633964	3L_8633964_SNP [dm3] 3L_8640864_SNP [dm6]	G	A	7.377e^-5	0.442	INTRON Cpr66D
3L	13049767	3L_13049767_INS [dm3] 3L_13056667_INS [dm6]	A	AT	7.394e^-5	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7443037	2L_7443037_SNP [dm3] 2L_7443037_SNP [dm6]	C	A	7.451e^-5	0.444	UPSTREAM CG5973 INTRON CG5973
2R	16293581	2R_16293581_SNP [dm3] 2R_20406076_SNP [dm6]	G	A	7.476e^-5	0.444	INTERGENIC
2L	8528781	2L_8528781_SNP [dm3] 2L_8528781_SNP [dm6]	G	C	7.518e^-5	0.445	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	7.539e^-5	0.445	INTERGENIC
3R	22487729	3R_22487729_SNP [dm3] 3R_26662007_SNP [dm6]	C	A	7.584e^-5	0.445	INTRON beat-VII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18037249	2R_18037249_SNP [dm3] 2R_22149744_SNP [dm6]	T	A	7.639e^-5	0.445	INTRON a
2R	18037250	2R_18037250_SNP [dm3] 2R_22149745_SNP [dm6]	C	A	7.639e^-5	0.445	INTRON a
3L	12195855	3L_12195855_SNP [dm3] 3L_12202755_SNP [dm6]	C	T	7.647e^-5	0.445	INTRON Adk1
3L	18024424	3L_18024424_SNP [dm3] 3L_18031324_SNP [dm6]	C	T	7.776e^-5	0.451	INTRON Eip75B
3L	811923	3L_811923_SNP [dm3] 3L_811923_SNP [dm6]	G	C	7.808e^-5	0.451	INTERGENIC
2R	6568558	2R_6568558_DEL [dm3] 2R_10681053_DEL [dm6]	GGTCCACAACACC...	A	7.829e^-5	0.451	INTRON stan	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	8638394	3L_8638394_SNP [dm3] 3L_8645294_SNP [dm6]	C	A	7.831e^-5	0.451	SPLICE_SITE_REGION CG13305 INTRON CG13305
2R	6924571	2R_6924571_SNP [dm3] 2R_11037066_SNP [dm6]	T	C	7.876e^-5	0.452	INTRON luna
2L	18622546	2L_18622546_SNP [dm3] 2L_18622546_SNP [dm6]	A	C	8.068e^-5	0.461	INTRON MESR3
2R	9165381	2R_9165381_SNP [dm3] 2R_13277876_SNP [dm6]	T	C	8.143e^-5	0.464	INTRON Dh31-R
3L	4144192	3L_4144192_SNP [dm3] 3L_4144192_SNP [dm6]	A	C	8.296e^-5	0.47	INTRON CG32260
2L	10703723	2L_10703723_SNP [dm3] 2L_10703723_SNP [dm6]	C	T	8.308e^-5	0.47	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2L	6591474	2L_6591474_SNP [dm3] 2L_6591474_SNP [dm6]	C	A	8.322e^-5	0.47	INTRON CG11319
2L	7442946	2L_7442946_SNP [dm3] 2L_7442946_SNP [dm6]	A	G	8.378e^-5	0.471	UPSTREAM CG5973 INTRON CG5973
3L	11829565	3L_11829565_SNP [dm3] 3L_11836465_SNP [dm6]	C	T	8.382e^-5	0.471	NON_SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_sens
2L	8508431	2L_8508431_SNP [dm3] 2L_8508431_SNP [dm6]	A	T	8.456e^-5	0.473	DOWNSTREAM CG13096 INTERGENIC
3L	14174961	3L_14174961_SNP [dm3] 3L_14181861_SNP [dm6]	A	G	8.504e^-5	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4579262	3L_4579262_DEL [dm3] 3L_4579262_DEL [dm6]	TT	T	8.534e^-5	0.474	INTRON CG42540
2R	10746457	2R_10746457_SNP [dm3] 2R_14858952_SNP [dm6]	G	A	8.549e^-5	0.474	UTR_3_PRIME U3-55K UPSTREAM CG33506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	12050114	3L_12050114_SNP [dm3] 3L_12057014_SNP [dm6]	T	C	8.688e^-5	0.481	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7097309	3L_7097309_SNP [dm3] 3L_7104209_SNP [dm6]	C	G	8.826e^-5	0.487	INTRON form3
3R	26453762	3R_26453762_SNP [dm3] 3R_30628040_SNP [dm6]	A	T	8.856e^-5	0.487	NON_SYNONYMOUS_CODING CG2267
3L	18747898	3L_18747898_SNP [dm3] 3L_18754798_SNP [dm6]	T	C	8.987e^-5	0.492	INTRON ftz-f1
3L	12050050	3L_12050050_SNP [dm3] 3L_12056950_SNP [dm6]	C	T	9.000e^-5	0.492	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8530163	2L_8530163_SNP [dm3] 2L_8530163_SNP [dm6]	G	A	9.103e^-5	0.494	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	9.105e^-5	0.494	INTRON qin & 1 other
2L	8541300	2L_8541300_SNP [dm3] 2L_8541300_SNP [dm6]	T	G	9.130e^-5	0.494	UTR_3_PRIME CG17834 UPSTREAM tRNA:CR31603 & 1 other DOWNSTREAM tRNA:CR31604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11795380	2R_11795380_SNP [dm3] 2R_15907875_SNP [dm6]	A	C	9.142e^-5	0.494	INTRON sli
3L	8638433	3L_8638433_SNP [dm3] 3L_8645333_SNP [dm6]	T	G	9.233e^-5	0.498	INTRON CG13305
3L	7097312	3L_7097312_SNP [dm3] 3L_7104212_SNP [dm6]	T	A	9.312e^-5	0.5	INTRON form3
3L	13049785	3L_13049785_SNP [dm3] 3L_13056685_SNP [dm6]	C	G	9.351e^-5	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13581569	2R_13581569_SNP [dm3] 2R_17694064_SNP [dm6]	T	G	9.356e^-5	0.5	INTRON swi2
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	9.392e^-5	0.5	INTERGENIC
3R	10459194	3R_10459194_SNP [dm3] 3R_14633472_SNP [dm6]	G	A	9.486e^-5	0.504	INTRON CG7886 & 1 other
2L	4929944	2L_4929944_SNP [dm3] 2L_4929944_SNP [dm6]	T	G	9.548e^-5	0.506	INTRON hoe1
2L	8510302	2L_8510302_SNP [dm3] 2L_8510302_SNP [dm6]	C	G	9.632e^-5	0.508	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	26907565	3R_26907565_SNP [dm3] 3R_31081843_SNP [dm6]	A	G	9.666e^-5	0.508	INTRON Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16062350	2R_16062350_SNP [dm3] 2R_20174845_SNP [dm6]	T	C	9.686e^-5	0.508	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13103759	3L_13103759_SNP [dm3] 3L_13110659_SNP [dm6]	G	C	9.713e^-5	0.508	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4891423	3L_4891423_SNP [dm3] 3L_4891423_SNP [dm6]	T	C	9.718e^-5	0.508	SYNONYMOUS_CODING CG17150
X	20841014	X_20841014_SNP [dm3] X_20969987_SNP [dm6]	C	G	9.844e^-5	0.51	INTERGENIC
2L	13168784	2L_13168784_SNP [dm3] 2L_13168784_SNP [dm6]	G	A	9.851e^-5	0.51	UTR_3_PRIME Sir2 DOWNSTREAM Sfmbt
2R	6163915	2R_6163915_DEL [dm3] 2R_10276410_DEL [dm6]	ATA	A	9.851e^-5	0.51	UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10641621	3R_10641621_SNP [dm3] 3R_14815899_SNP [dm6]	A	T	9.873e^-5	0.51	NON_SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14036282	X_14036282_SNP [dm3] X_14142249_SNP [dm6]	G	T	9.915e^-5	0.511	DOWNSTREAM CR44658 INTERGENIC
X	20840978	X_20840978_SNP [dm3] X_20969951_SNP [dm6]	A	T	9.972e^-5	0.512	INTERGENIC
3L	13300943	3L_13300943_SNP [dm3] 3L_13307843_SNP [dm6]	G	T	9.998e^-5	0.512	INTERGENIC
3L	17982336	3L_17982336_SNP [dm3] 3L_17989236_SNP [dm6]	C	T	1.012e^-4	0.517	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	776240	2L_776240_SNP [dm3] 2L_776240_SNP [dm6]	A	G	1.014e^-4	0.517	UPSTREAM CG13946 INTERGENIC
3L	2509145	3L_2509145_SNP [dm3] 3L_2509145_SNP [dm6]	A	T	1.022e^-4	0.518	INTRON Spn
2R	12599009	2R_12599009_SNP [dm3] 2R_16711504_SNP [dm6]	C	A	1.023e^-4	0.518	INTRON CG30463
2R	4490343	2R_4490343_SNP [dm3] 2R_8602838_SNP [dm6]	T	G	1.036e^-4	0.524	INTRON rgr	TF binding site mE1_TFBS_cad
2L	5160637	2L_5160637_SNP [dm3] 2L_5160637_SNP [dm6]	T	A	1.045e^-4	0.527	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13885114	2R_13885114_SNP [dm3] 2R_17997609_SNP [dm6]	T	C	1.058e^-4	0.531	INTRON dpr13
3L	4144201	3L_4144201_SNP [dm3] 3L_4144201_SNP [dm6]	C	A	1.063e^-4	0.531	INTRON CG32260
3L	4144236	3L_4144236_SNP [dm3] 3L_4144236_SNP [dm6]	C	T	1.063e^-4	0.531	INTRON CG32260
X	8735215	X_8735215_INS [dm3] X_8841182_INS [dm6]	A	AA	1.064e^-4	0.531	INTRON CG12075
2L	2787340	2L_2787340_DEL [dm3] 2L_2787340_DEL [dm6]	TT	T	1.076e^-4	0.534	INTRON Syt1
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	1.078e^-4	0.534	INTRON hoe1
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	1.079e^-4	0.534	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8265886	3L_8265886_SNP [dm3] 3L_8272786_SNP [dm6]	T	C	1.081e^-4	0.534	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad
3R	19064764	3R_19064764_SNP [dm3] 3R_23239042_SNP [dm6]	A	T	1.098e^-4	0.541	INTRON CG4467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	776232	2L_776232_SNP [dm3] 2L_776232_SNP [dm6]	C	A	1.104e^-4	0.541	UPSTREAM CG13946 INTERGENIC
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	1.105e^-4	0.541	INTRON CG42313
3L	4891428	3L_4891428_SNP [dm3] 3L_4891428_SNP [dm6]	G	C	1.109e^-4	0.542	SYNONYMOUS_CODING CG17150
X	14036315	X_14036315_DEL [dm3] X_14142282_DEL [dm6]	TTG	C	1.117e^-4	0.544	DOWNSTREAM CR44658 INTERGENIC
2L	19214969	2L_19214969_SNP [dm3] 2L_19214969_SNP [dm6]	T	A	1.124e^-4	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12195182	3L_12195182_SNP [dm3] 3L_12202082_SNP [dm6]	C	A	1.126e^-4	0.546	INTRON Adk1
3R	4822931	3R_4822931_SNP [dm3] 3R_8997209_SNP [dm6]	A	G	1.131e^-4	0.547	UPSTREAM CG11977 INTRON CG31100
3R	16580490	3R_16580490_SNP [dm3] 3R_20754768_SNP [dm6]	A	G	1.138e^-4	0.548	INTRON CG42322
X	3558599	X_3558599_SNP [dm3] X_3664566_SNP [dm6]	C	G	1.143e^-4	0.548	SYNONYMOUS_CODING AstA-R1
X	13039038	X_13039038_SNP [dm3] X_13145005_SNP [dm6]	G	A	1.143e^-4	0.548	INTRON CG32645
2L	8527155	2L_8527155_SNP [dm3] 2L_8527155_SNP [dm6]	C	T	1.144e^-4	0.548	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3128321	2L_3128321_SNP [dm3] 2L_3128321_SNP [dm6]	C	A	1.147e^-4	0.548	UPSTREAM CG15403 INTRON toc
2L	7455711	2L_7455711_SNP [dm3] 2L_7455711_SNP [dm6]	C	A	1.163e^-4	0.55	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14939315	2R_14939315_SNP [dm3] 2R_19051810_SNP [dm6]	T	C	1.164e^-4	0.55	INTERGENIC
3L	5892497	3L_5892497_SNP [dm3] 3L_5899397_SNP [dm6]	A	G	1.166e^-4	0.55	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	12479002	2R_12479002_DEL [dm3] 2R_16591497_DEL [dm6]	AAA	A	1.166e^-4	0.55	INTRON CG8306	TF binding site mE1_TFBS_sens
2R	10201194	2R_10201194_SNP [dm3] 2R_14313689_SNP [dm6]	A	G	1.170e^-4	0.55	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10201195	2R_10201195_SNP [dm3] 2R_14313690_SNP [dm6]	T	A	1.170e^-4	0.55	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18151351	3L_18151351_SNP [dm3] 3L_18158251_SNP [dm6]	A	G	1.179e^-4	0.552	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8278364	3L_8278364_SNP [dm3] 3L_8285264_SNP [dm6]	C	G	1.186e^-4	0.552	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13049777	3L_13049777_SNP [dm3] 3L_13056677_SNP [dm6]	A	G	1.188e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5516709	2L_5516709_SNP [dm3] 2L_5516709_SNP [dm6]	T	A	1.188e^-4	0.552	INTERGENIC
2R	12251907	2R_12251907_SNP [dm3] 2R_16364402_SNP [dm6]	T	A	1.189e^-4	0.552	START_GAINED CG15711 UTR_5_PRIME CG15711 UPSTREAM CG15711 DOWNSTREAM CG6262
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	1.196e^-4	0.552	INTRON CG9932
3R	17905547	3R_17905547_SNP [dm3] 3R_22079825_SNP [dm6]	A	C	1.198e^-4	0.552	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
3R	26471511	3R_26471511_SNP [dm3] 3R_30645789_SNP [dm6]	G	A	1.198e^-4	0.552	SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
2R	15035690	2R_15035690_SNP [dm3] 2R_19148185_SNP [dm6]	T	A	1.207e^-4	0.553	INTRON ena	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14059202	3R_14059202_SNP [dm3] 3R_18233480_SNP [dm6]	A	G	1.207e^-4	0.553	INTERGENIC	regulatory region REDfly_CRMs
3R	27709356	3R_27709356_INS [dm3] 3R_31883634_INS [dm6]	A	AA	1.213e^-4	0.554	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	1.215e^-4	0.554	NON_SYNONYMOUS_CODING Sin3A
3L	8633969	3L_8633969_SNP [dm3] 3L_8640869_SNP [dm6]	A	T	1.225e^-4	0.558	INTRON Cpr66D
X	15253021	X_15253021_SNP [dm3] X_15358988_SNP [dm6]	C	T	1.229e^-4	0.558	DOWNSTREAM Pp1-13C INTRON acj6
3R	17905464	3R_17905464_DEL [dm3] 3R_22079742_DEL [dm6]	ATTCTAAGGTCACCA...	A	1.244e^-4	0.561	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
2L	8093691	2L_8093691_SNP [dm3] 2L_8093691_SNP [dm6]	T	C	1.245e^-4	0.561	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25563247	3R_25563247_SNP [dm3] 3R_29737525_SNP [dm6]	T	C	1.247e^-4	0.561	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	16841640	X_16841640_SNP [dm3] X_16947607_SNP [dm6]	A	G	1.247e^-4	0.561	DOWNSTREAM CG13000 INTRON RhoGAP15B
3L	12630103	3L_12630103_SNP [dm3] 3L_12637003_SNP [dm6]	C	T	1.251e^-4	0.561	INTRON CR32111
2R	11880536	2R_11880536_SNP [dm3] 2R_15993031_SNP [dm6]	C	T	1.260e^-4	0.563	SYNONYMOUS_CODING CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site mE1_TFBS_sens
3L	12050048	3L_12050048_SNP [dm3] 3L_12056948_SNP [dm6]	A	T	1.263e^-4	0.563	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8506084	2L_8506084_SNP [dm3] 2L_8506084_SNP [dm6]	A	T	1.269e^-4	0.563	INTRON Dh31
2L	14322284	2L_14322284_SNP [dm3] 2L_14322284_SNP [dm6]	T	C	1.270e^-4	0.563	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3R	26080672	3R_26080672_SNP [dm3] 3R_30254950_SNP [dm6]	G	A	1.271e^-4	0.563	DOWNSTREAM CG18404 INTERGENIC
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	1.282e^-4	0.567	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
3R	26080673	3R_26080673_SNP [dm3] 3R_30254951_SNP [dm6]	T	G	1.285e^-4	0.567	DOWNSTREAM CG18404 INTERGENIC
2L	2644388	2L_2644388_SNP [dm3] 2L_2644388_SNP [dm6]	T	C	1.291e^-4	0.568	INTERGENIC
2L	4016121	2L_4016121_SNP [dm3] 2L_4016121_SNP [dm6]	T	A	1.305e^-4	0.571	INTERGENIC
3R	25562554	3R_25562554_SNP [dm3] 3R_29736832_SNP [dm6]	G	A	1.307e^-4	0.571	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20393796	3R_20393796_SNP [dm3] 3R_24568074_SNP [dm6]	A	G	1.307e^-4	0.571	INTRON CG13624	TF binding site BDTNP1_TFBS_da
3R	16726316	3R_16726316_SNP [dm3] 3R_20900594_SNP [dm6]	C	T	1.318e^-4	0.575	INTERGENIC
3L	1023321	3L_1023321_SNP [dm3] 3L_1023321_SNP [dm6]	G	A	1.325e^-4	0.577	UPSTREAM trio INTRON trio	TF binding site BDTNP1_TFBS_twi
2L	3084548	2L_3084548_SNP [dm3] 2L_3084548_SNP [dm6]	G	A	1.329e^-4	0.577	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6298014	3L_6298014_SNP [dm3] 3L_6304914_SNP [dm6]	C	T	1.333e^-4	0.577	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
2R	13181263	2R_13181263_SNP [dm3] 2R_17293758_SNP [dm6]	G	A	1.336e^-4	0.577	INTRON mbl
3R	10643143	3R_10643143_SNP [dm3] 3R_14817421_SNP [dm6]	G	A	1.343e^-4	0.579	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	4891435	3L_4891435_SNP [dm3] 3L_4891435_SNP [dm6]	C	T	1.346e^-4	0.579	SYNONYMOUS_CODING CG17150
3R	5216594	3R_5216594_SNP [dm3] 3R_9390872_SNP [dm6]	A	G	1.350e^-4	0.579	INTRON FER
2R	15885873	2R_15885873_SNP [dm3] 2R_19998368_SNP [dm6]	A	G	1.357e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19066188	3R_19066188_SNP [dm3] 3R_23240466_SNP [dm6]	T	A	1.363e^-4	0.582	UPSTREAM CG4467 INTRON CG4467
2R	15995686	2R_15995686_SNP [dm3] 2R_20108181_SNP [dm6]	T	C	1.370e^-4	0.584	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26321857	3R_26321857_SNP [dm3] 3R_30496135_SNP [dm6]	T	G	1.373e^-4	0.584	UTR_5_PRIME PH4alphaMP DOWNSTREAM PH4alphaNE1	TF binding site BDTNP1_TFBS_z
2L	1746146	2L_1746146_SNP [dm3] 2L_1746146_SNP [dm6]	C	A	1.378e^-4	0.585	INTRON CG17646
3L	6477067	3L_6477067_SNP [dm3] 3L_6483967_SNP [dm6]	A	G	1.382e^-4	0.585	INTRON CG42747	TF binding site mE1_TFBS_cad
3L	7277250	3L_7277250_INS [dm3] 3L_7284150_INS [dm6]	A	AAG	1.384e^-4	0.585	INTRON unc-13-4A
3L	12095035	3L_12095035_SNP [dm3] 3L_12101935_SNP [dm6]	A	G	1.396e^-4	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	7747822	3R_7747822_DEL [dm3] 3R_11922100_DEL [dm6]	GG	G	1.398e^-4	0.587	INTRON Cad87A
3L	12095031	3L_12095031_SNP [dm3] 3L_12101931_SNP [dm6]	A	C	1.400e^-4	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	8409984	2R_8409984_DEL [dm3] 2R_12522479_DEL [dm6]	CTCTTTAAAGATTATTCCAA...	C	1.414e^-4	0.591	FRAME_SHIFT CG33632 DOWNSTREAM CG8569
3L	12630140	3L_12630140_INS [dm3] 3L_12637040_INS [dm6]	T	TTAGAT	1.415e^-4	0.591	INTRON CR32111
3L	13142140	3L_13142140_SNP [dm3] 3L_13149040_SNP [dm6]	T	A	1.417e^-4	0.591	INTERGENIC
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	1.425e^-4	0.593	INTRON CG17834
X	18536977	X_18536977_SNP [dm3] X_18642944_SNP [dm6]	C	T	1.428e^-4	0.593	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20840514	X_20840514_SNP [dm3] X_20969487_SNP [dm6]	C	T	1.439e^-4	0.596	INTERGENIC
X	16841682	X_16841682_SNP [dm3] X_16947649_SNP [dm6]	C	A	1.450e^-4	0.598	DOWNSTREAM CG13000 INTRON RhoGAP15B
2R	6163922	2R_6163922_SNP [dm3] 2R_10276417_SNP [dm6]	G	T	1.451e^-4	0.598	START_GAINED CAP UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10483617	2R_10483617_SNP [dm3] 2R_14596112_SNP [dm6]	G	A	1.456e^-4	0.598	SYNONYMOUS_CODING RpI1 DOWNSTREAM CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8508772	2L_8508772_SNP [dm3] 2L_8508772_SNP [dm6]	A	T	1.456e^-4	0.598	DOWNSTREAM CG13096 INTERGENIC
3R	11284903	3R_11284903_DEL [dm3] 3R_15459181_DEL [dm6]	ATA	A	1.462e^-4	0.599	INTRON AdamTS-A
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	1.469e^-4	0.599	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	8512163	2L_8512163_DEL [dm3] 2L_8512163_DEL [dm6]	AA	A	1.471e^-4	0.599	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19066690	3R_19066690_SNP [dm3] 3R_23240968_SNP [dm6]	G	A	1.471e^-4	0.599	UPSTREAM CG4467 INTRON CG4467
3R	9429731	3R_9429731_SNP [dm3] 3R_13604009_SNP [dm6]	C	T	1.477e^-4	0.599	INTERGENIC
3R	25416680	3R_25416680_DEL [dm3] 3R_29590958_DEL [dm6]	AGT	A	1.484e^-4	0.599	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	9102964	3L_9102964_SNP [dm3] 3L_9109864_SNP [dm6]	G	A	1.484e^-4	0.599	INTRON bol
2R	4490357	2R_4490357_SNP [dm3] 2R_8602852_SNP [dm6]	C	T	1.485e^-4	0.599	INTRON rgr	TF binding site mE1_TFBS_cad
2L	8531677	2L_8531677_SNP [dm3] 2L_8531677_SNP [dm6]	C	T	1.493e^-4	0.601	INTRON CG17834
2L	3093771	2L_3093771_SNP [dm3] 2L_3093771_SNP [dm6]	A	T	1.501e^-4	0.603	INTRON toc
3L	17166952	3L_17166952_INS [dm3] 3L_17173852_INS [dm6]	C	ACA	1.507e^-4	0.604	INTRON Rbp6
3R	23263348	3R_23263348_SNP [dm3] 3R_27437626_SNP [dm6]	C	G	1.512e^-4	0.604	UPSTREAM side INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8528755	2L_8528755_SNP [dm3] 2L_8528755_SNP [dm6]	A	G	1.515e^-4	0.604	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13090763	2L_13090763_SNP [dm3] 2L_13090763_SNP [dm6]	C	T	1.517e^-4	0.604	DOWNSTREAM CR44197 INTERGENIC
3L	13200458	3L_13200458_SNP [dm3] 3L_13207358_SNP [dm6]	A	T	1.533e^-4	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4578969	3L_4578969_SNP [dm3] 3L_4578969_SNP [dm6]	T	C	1.539e^-4	0.609	INTRON CG42540
2R	8458808	2R_8458808_SNP [dm3] 2R_12571303_SNP [dm6]	T	A	1.540e^-4	0.609	UPSTREAM ClC-b INTRON stil
3L	14264933	3L_14264933_SNP [dm3] 3L_14271833_SNP [dm6]	A	G	1.544e^-4	0.609	INTERGENIC
2R	16008419	2R_16008419_SNP [dm3] 2R_20120914_SNP [dm6]	T	C	1.546e^-4	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	1.559e^-4	0.61	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16873321	3L_16873321_SNP [dm3] 3L_16880221_SNP [dm6]	C	A	1.561e^-4	0.61	DOWNSTREAM CG32170 INTRON Lmpt
3R	25563014	3R_25563014_SNP [dm3] 3R_29737292_SNP [dm6]	C	T	1.563e^-4	0.61	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3R	25563253	3R_25563253_SNP [dm3] 3R_29737531_SNP [dm6]	T	G	1.563e^-4	0.61	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11828498	3L_11828498_SNP [dm3] 3L_11835398_SNP [dm6]	C	T	1.569e^-4	0.61	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21153249	X_21153249_SNP [dm3] X_21282222_SNP [dm6]	A	T	1.572e^-4	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8092645	2L_8092645_SNP [dm3] 2L_8092645_SNP [dm6]	G	A	1.573e^-4	0.61	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	1.575e^-4	0.61	INTRON dpr13
3R	15450330	3R_15450330_SNP [dm3] 3R_19624608_SNP [dm6]	G	C	1.576e^-4	0.61	UTR_5_PRIME CG6231 INTRON CG6231
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	1.580e^-4	0.61	INTERGENIC
2L	8527335	2L_8527335_SNP [dm3] 2L_8527335_SNP [dm6]	T	C	1.588e^-4	0.611	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16961555	3R_16961555_SNP [dm3] 3R_21135833_SNP [dm6]	T	A	1.591e^-4	0.611	UPSTREAM Ubpy INTRON Ubpy
2L	8539863	2L_8539863_SNP [dm3] 2L_8539863_SNP [dm6]	C	G	1.592e^-4	0.611	INTRON CG17834
3L	4143536	3L_4143536_SNP [dm3] 3L_4143536_SNP [dm6]	G	A	1.598e^-4	0.612	SYNONYMOUS_CODING CG32260 INTRON CG32260
3R	19066621	3R_19066621_SNP [dm3] 3R_23240899_SNP [dm6]	A	T	1.608e^-4	0.612	UPSTREAM CG4467 INTRON CG4467
3L	10378453	3L_10378453_SNP [dm3] 3L_10385353_SNP [dm6]	T	A	1.610e^-4	0.612	INTERGENIC
2L	7197088	2L_7197088_SNP [dm3] 2L_7197088_SNP [dm6]	C	T	1.611e^-4	0.612	INTRON CG4502
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	1.612e^-4	0.612	INTERGENIC
3L	17829248	3L_17829248_SNP [dm3] 3L_17836148_SNP [dm6]	A	G	1.623e^-4	0.613	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	1.623e^-4	0.613	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	1.628e^-4	0.613	INTERGENIC
3R	12477272	3R_12477272_SNP [dm3] 3R_16651550_SNP [dm6]	C	G	1.630e^-4	0.613	UTR_3_PRIME CG14907 UPSTREAM CG14906 DOWNSTREAM modSP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	14685772	X_14685772_SNP [dm3] X_14791739_SNP [dm6]	G	A	1.636e^-4	0.613	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
2R	19489485	2R_19489485_SNP [dm3] 2R_23601962_SNP [dm6]	C	T	1.640e^-4	0.613	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19489489	2R_19489489_SNP [dm3] 2R_23601966_SNP [dm6]	C	T	1.640e^-4	0.613	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16841666	X_16841666_SNP [dm3] X_16947633_SNP [dm6]	T	G	1.646e^-4	0.613	DOWNSTREAM CG13000 INTRON RhoGAP15B
2L	5389244	2L_5389244_SNP [dm3] 2L_5389244_SNP [dm6]	A	T	1.646e^-4	0.613	DOWNSTREAM CR44745 INTERGENIC
3L	14299200	3L_14299200_SNP [dm3] 3L_14306100_SNP [dm6]	G	C	1.649e^-4	0.613	INTRON fz
3R	16575712	3R_16575712_SNP [dm3] 3R_20749990_SNP [dm6]	C	G	1.653e^-4	0.613	UPSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_twi
2R	10201200	2R_10201200_SNP [dm3] 2R_14313695_SNP [dm6]	G	A	1.656e^-4	0.613	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9960421	2R_9960421_SNP [dm3] 2R_14072916_SNP [dm6]	T	A	1.656e^-4	0.613	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	1.659e^-4	0.613	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16156173	X_16156173_SNP [dm3] X_16262140_SNP [dm6]	G	C	1.669e^-4	0.613	INTERGENIC
X	16065065	X_16065065_DEL [dm3] X_16171032_DEL [dm6]	AACTGTATCTGTGCGCA...	A	1.671e^-4	0.613	INTERGENIC
2L	776096	2L_776096_SNP [dm3] 2L_776096_SNP [dm6]	A	C	1.673e^-4	0.613	UPSTREAM CG13946 INTERGENIC
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	1.676e^-4	0.613	INTERGENIC
2R	6624366	2R_6624366_SNP [dm3] 2R_10736861_SNP [dm6]	A	G	1.677e^-4	0.613	INTRON CG7220
2L	5516713	2L_5516713_DEL [dm3] 2L_5516713_DEL [dm6]	CTTGACTAAATATGATGGTA...	C	1.682e^-4	0.614	UPSTREAM CG14020 INTERGENIC
2R	14054745	2R_14054745_SNP [dm3] 2R_18167240_SNP [dm6]	G	A	1.685e^-4	0.614	UTR_5_PRIME CG42518 UPSTREAM CG42518 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	13968167	2L_13968167_SNP [dm3] 2L_13968167_SNP [dm6]	C	A	1.697e^-4	0.617	UPSTREAM NimB3 DOWNSTREAM NimB4 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8388065	2R_8388065_SNP [dm3] 2R_12500560_SNP [dm6]	C	T	1.702e^-4	0.617	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16843962	X_16843962_SNP [dm3] X_16949929_SNP [dm6]	A	T	1.705e^-4	0.617	INTRON RhoGAP15B
2R	9962863	2R_9962863_DEL [dm3] 2R_14075358_DEL [dm6]	CC	C	1.721e^-4	0.62	INTRON Prosap
2L	8508827	2L_8508827_SNP [dm3] 2L_8508827_SNP [dm6]	C	T	1.724e^-4	0.62	DOWNSTREAM CG13096 INTERGENIC
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	1.725e^-4	0.62	INTERGENIC
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	1.726e^-4	0.62	INTRON form3
3L	4891338	3L_4891338_SNP [dm3] 3L_4891338_SNP [dm6]	G	A	1.732e^-4	0.62	SYNONYMOUS_CODING CG17150
X	16844114	X_16844114_SNP [dm3] X_16950081_SNP [dm6]	A	G	1.734e^-4	0.62	INTRON RhoGAP15B
3L	5892502	3L_5892502_SNP [dm3] 3L_5899402_SNP [dm6]	A	T	1.738e^-4	0.62	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	13547514	2R_13547514_SNP [dm3] 2R_17660009_SNP [dm6]	T	A	1.740e^-4	0.62	INTRON CCHa1-R
3L	4142811	3L_4142811_SNP [dm3] 3L_4142811_SNP [dm6]	T	G	1.749e^-4	0.623	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
2R	10201183	2R_10201183_SNP [dm3] 2R_14313678_SNP [dm6]	T	C	1.756e^-4	0.623	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3515151	2L_3515151_SNP [dm3] 2L_3515151_SNP [dm6]	A	G	1.757e^-4	0.623	SYNONYMOUS_CODING CG17593 UPSTREAM CG33123	TF binding site mE1_TFBS_HSA
2L	8540525	2L_8540525_SNP [dm3] 2L_8540525_SNP [dm6]	G	C	1.772e^-4	0.623	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
X	14546035	X_14546035_INS [dm3] X_14652002_INS [dm6]	T	TT	1.772e^-4	0.623	INTRON NetA	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11745888	3R_11745888_SNP [dm3] 3R_15920166_SNP [dm6]	C	A	1.773e^-4	0.623	UPSTREAM CG4221 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12663120	2R_12663120_SNP [dm3] 2R_16775615_SNP [dm6]	A	T	1.775e^-4	0.623	UTR_3_PRIME Arp53D	TF binding site mE1_TFBS_HSA
3L	15143943	3L_15143943_SNP [dm3] 3L_15150843_SNP [dm6]	T	C	1.778e^-4	0.623	UTR_5_PRIME FucTA
2R	8790543	2R_8790543_SNP [dm3] 2R_12903038_SNP [dm6]	C	A	1.779e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14508069	3L_14508069_SNP [dm3] 3L_14514969_SNP [dm6]	A	G	1.785e^-4	0.623	INTRON bbg
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	1.785e^-4	0.623	INTRON wat
2L	640322	2L_640322_SNP [dm3] 2L_640322_SNP [dm6]	T	A	1.788e^-4	0.623	UTR_3_PRIME ds	TF binding site mE1_TFBS_cad
2R	7109454	2R_7109454_SNP [dm3] 2R_11221949_SNP [dm6]	A	C	1.793e^-4	0.623	UTR_3_PRIME Syx6 UPSTREAM CG7737
2L	8531564	2L_8531564_SNP [dm3] 2L_8531564_SNP [dm6]	A	G	1.794e^-4	0.623	INTRON CG17834
X	6641007	X_6641007_SNP [dm3] X_6746974_SNP [dm6]	A	G	1.808e^-4	0.627	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14761088	2R_14761088_SNP [dm3] 2R_18873583_SNP [dm6]	G	A	1.824e^-4	0.63	INTERGENIC
2R	14606992	2R_14606992_SNP [dm3] 2R_18719487_SNP [dm6]	G	A	1.832e^-4	0.63	UPSTREAM mir-4982 INTRON Hs3st-A
2L	6591471	2L_6591471_SNP [dm3] 2L_6591471_SNP [dm6]	G	A	1.833e^-4	0.63	INTRON CG11319
2R	10201199	2R_10201199_SNP [dm3] 2R_14313694_SNP [dm6]	A	C	1.836e^-4	0.63	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12385892	2L_12385892_SNP [dm3] 2L_12385892_SNP [dm6]	T	C	1.837e^-4	0.63	INTRON bru-2
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	1.839e^-4	0.63	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7531919	2L_7531919_SNP [dm3] 2L_7531919_SNP [dm6]	C	A	1.842e^-4	0.63	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	1.844e^-4	0.63	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	6085847	2R_6085847_SNP [dm3] 2R_10198342_SNP [dm6]	G	T	1.849e^-4	0.631	INTRON CG34221
2L	14894389	2L_14894389_SNP [dm3] 2L_14894389_SNP [dm6]	T	C	1.853e^-4	0.631	INTERGENIC
3L	13447339	3L_13447339_SNP [dm3] 3L_13454239_SNP [dm6]	G	A	1.860e^-4	0.632	INTRON CG10738
2L	10660247	2L_10660247_SNP [dm3] 2L_10660247_SNP [dm6]	A	T	1.873e^-4	0.635	INTERGENIC
2L	19207519	2L_19207519_SNP [dm3] 2L_19207519_SNP [dm6]	G	T	1.875e^-4	0.635	INTRON drl
X	18534489	X_18534489_SNP [dm3] X_18640456_SNP [dm6]	T	C	1.889e^-4	0.636	INTRON Rip11	TF binding site mE1_TFBS_HSA
2L	10047037	2L_10047037_SNP [dm3] 2L_10047037_SNP [dm6]	G	A	1.891e^-4	0.636	INTERGENIC
2R	14081083	2R_14081083_SNP [dm3] 2R_18193578_SNP [dm6]	A	T	1.897e^-4	0.636	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12159304	3L_12159304_SNP [dm3] 3L_12166204_SNP [dm6]	C	T	1.898e^-4	0.636	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad
2L	5968847	2L_5968847_SNP [dm3] 2L_5968847_SNP [dm6]	C	T	1.913e^-4	0.636	SYNONYMOUS_CODING Ucp4C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6732121	X_6732121_SNP [dm3] X_6838088_SNP [dm6]	G	A	1.914e^-4	0.636	UTR_3_PRIME nonC DOWNSTREAM CG14435 & 1 other
3R	17080242	3R_17080242_SNP [dm3] 3R_21254520_SNP [dm6]	A	G	1.917e^-4	0.636	INTRON ETHR
2L	8549212	2L_8549212_SNP [dm3] 2L_8549212_SNP [dm6]	C	T	1.921e^-4	0.636	INTRON Sema-1a
2L	8890520	2L_8890520_SNP [dm3] 2L_8890520_SNP [dm6]	T	A	1.922e^-4	0.636	UPSTREAM CG42713 INTERGENIC
2L	776237	2L_776237_SNP [dm3] 2L_776237_SNP [dm6]	C	T	1.927e^-4	0.636	UPSTREAM CG13946 INTERGENIC
2L	8533765	2L_8533765_SNP [dm3] 2L_8533765_SNP [dm6]	T	A	1.929e^-4	0.636	INTRON CG17834	TF binding site mE1_TFBS_cad
3R	19066285	3R_19066285_SNP [dm3] 3R_23240563_SNP [dm6]	A	G	1.929e^-4	0.636	UPSTREAM CG4467 INTRON CG4467
2R	13920130	2R_13920130_INS [dm3] 2R_18032625_INS [dm6]	C	CGGTGCAACAAAAAACAAAA...	1.931e^-4	0.636	INTERGENIC
3R	9901916	3R_9901916_SNP [dm3] 3R_14076194_SNP [dm6]	A	C	1.931e^-4	0.636	INTRON foxo
X	18541370	X_18541370_SNP [dm3] X_18647337_SNP [dm6]	A	T	1.933e^-4	0.636	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	1.936e^-4	0.636	INTERGENIC
2L	1473973	2L_1473973_SNP [dm3] 2L_1473973_SNP [dm6]	A	T	1.938e^-4	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6624381	2R_6624381_SNP [dm3] 2R_10736876_SNP [dm6]	C	A	1.942e^-4	0.636	INTRON CG7220
2R	6624382	2R_6624382_SNP [dm3] 2R_10736877_SNP [dm6]	G	T	1.942e^-4	0.636	INTRON CG7220
3R	26181788	3R_26181788_SNP [dm3] 3R_30356066_SNP [dm6]	C	T	1.953e^-4	0.638	INTRON hdc
2L	8508956	2L_8508956_SNP [dm3] 2L_8508956_SNP [dm6]	A	T	1.963e^-4	0.64	DOWNSTREAM CG13096 INTERGENIC
3L	2580085	3L_2580085_SNP [dm3] 3L_2580085_SNP [dm6]	A	G	1.975e^-4	0.643	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7146731	3R_7146731_INS [dm3] 3R_11321009_INS [dm6]	A	AA	1.982e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	10201299	2R_10201299_SNP [dm3] 2R_14313794_SNP [dm6]	A	T	1.988e^-4	0.643	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4141546	3L_4141546_SNP [dm3] 3L_4141546_SNP [dm6]	A	T	1.992e^-4	0.643	UTR_5_PRIME Akh UPSTREAM CG32260 DOWNSTREAM Ras64B
3R	19317666	3R_19317666_SNP [dm3] 3R_23491944_SNP [dm6]	A	G	1.993e^-4	0.643	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2580089	3L_2580089_SNP [dm3] 3L_2580089_SNP [dm6]	G	C	1.994e^-4	0.643	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15992303	2R_15992303_SNP [dm3] 2R_20104798_SNP [dm6]	C	A	1.996e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	1023250	3L_1023250_SNP [dm3] 3L_1023250_SNP [dm6]	C	A	2.000e^-4	0.643	UPSTREAM trio INTRON trio	TF binding site BDTNP1_TFBS_twi
X	508570	X_508570_INS [dm3] X_614537_INS [dm6]	T	TT	2.004e^-4	0.644	INTRON CG13366
X	18536874	X_18536874_SNP [dm3] X_18642841_SNP [dm6]	G	T	2.008e^-4	0.644	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20840963	X_20840963_SNP [dm3] X_20969936_SNP [dm6]	A	G	2.032e^-4	0.65	INTERGENIC
2L	1271628	2L_1271628_SNP [dm3] 2L_1271628_SNP [dm6]	G	A	2.038e^-4	0.65	INTRON robo3
3L	14289841	3L_14289841_SNP [dm3] 3L_14296741_SNP [dm6]	T	G	2.039e^-4	0.65	INTRON fz
3L	1591103	3L_1591103_SNP [dm3] 3L_1591103_SNP [dm6]	C	T	2.050e^-4	0.653	INTRON CG13917
3L	4890780	3L_4890780_SNP [dm3] 3L_4890780_SNP [dm6]	A	C	2.065e^-4	0.656	INTRON CG17150
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	2.073e^-4	0.658	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	2.084e^-4	0.659	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	8468822	2R_8468822_SNP [dm3] 2R_12581317_SNP [dm6]	A	G	2.088e^-4	0.659	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	2.089e^-4	0.659	INTERGENIC
2L	10660350	2L_10660350_SNP [dm3] 2L_10660350_SNP [dm6]	C	G	2.093e^-4	0.659	INTERGENIC
2R	17599556	2R_17599556_SNP [dm3] 2R_21712051_SNP [dm6]	C	T	2.100e^-4	0.659	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	2.105e^-4	0.659	INTRON CG9932
3L	8638400	3L_8638400_SNP [dm3] 3L_8645300_SNP [dm6]	A	T	2.106e^-4	0.659	INTRON CG13305
2L	846275	2L_846275_INS [dm3] 2L_846275_INS [dm6]	C	CC	2.109e^-4	0.659	INTRON drongo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	776310	2L_776310_SNP [dm3] 2L_776310_SNP [dm6]	A	G	2.109e^-4	0.659	UPSTREAM CG13946 INTERGENIC
3L	14288732	3L_14288732_DEL [dm3] 3L_14295632_DEL [dm6]	TGTT	T	2.116e^-4	0.66	INTRON fz
3R	21956150	3R_21956150_DEL [dm3] 3R_26130428_DEL [dm6]	AATAC	A	2.121e^-4	0.661	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
2L	4930121	2L_4930121_SNP [dm3] 2L_4930121_SNP [dm6]	A	T	2.124e^-4	0.661	INTRON hoe1
2L	7516526	2L_7516526_SNP [dm3] 2L_7516526_SNP [dm6]	T	A	2.128e^-4	0.661	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13150872	2R_13150872_SNP [dm3] 2R_17263367_SNP [dm6]	C	A	2.138e^-4	0.661	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13185771	2L_13185771_SNP [dm3] 2L_13185771_SNP [dm6]	G	C	2.141e^-4	0.661	SYNONYMOUS_CODING CG16974 DOWNSTREAM CG5458
2R	13920089	2R_13920089_SNP [dm3] 2R_18032584_SNP [dm6]	A	G	2.142e^-4	0.661	INTERGENIC
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	2.147e^-4	0.661	INTRON tmod	TF binding site BDTNP1_TFBS_dl
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	2.149e^-4	0.661	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9826401	2L_9826401_SNP [dm3] 2L_9826401_SNP [dm6]	T	C	2.150e^-4	0.661	INTRON nAChRalpha6
3L	8602256	3L_8602256_SNP [dm3] 3L_8609156_SNP [dm6]	T	C	2.162e^-4	0.662	INTRON CG6282
3R	25854214	3R_25854214_DEL [dm3] 3R_30028492_DEL [dm6]	TAA	T	2.171e^-4	0.662	INTRON Axn
3L	14294812	3L_14294812_SNP [dm3] 3L_14301712_SNP [dm6]	T	A	2.178e^-4	0.662	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9094708	X_9094708_SNP [dm3] X_9200675_SNP [dm6]	G	A	2.186e^-4	0.662	INTRON su_r_
3L	4579211	3L_4579211_SNP [dm3] 3L_4579211_SNP [dm6]	T	G	2.196e^-4	0.662	INTRON CG42540
X	14263969	X_14263969_SNP [dm3] X_14369936_SNP [dm6]	T	C	2.223e^-4	0.662	INTRON dpr8
2R	15226002	2R_15226002_SNP [dm3] 2R_19338497_SNP [dm6]	T	A	2.226e^-4	0.662	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12520661	2L_12520661_DEL [dm3] 2L_12520661_DEL [dm6]	TT	T	2.228e^-4	0.662	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
X	7582580	X_7582580_SNP [dm3] X_7688547_SNP [dm6]	A	G	2.229e^-4	0.662	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	8508995	2L_8508995_SNP [dm3] 2L_8508995_SNP [dm6]	T	C	2.229e^-4	0.662	DOWNSTREAM CG13096 INTERGENIC
2R	18361239	2R_18361239_SNP [dm3] 2R_22473734_SNP [dm6]	G	A	2.230e^-4	0.662	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10704163	2L_10704163_SNP [dm3] 2L_10704163_SNP [dm6]	C	A	2.231e^-4	0.662	SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	2.235e^-4	0.662	INTRON CG6282
3L	7211871	3L_7211871_SNP [dm3] 3L_7218771_SNP [dm6]	G	C	2.236e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6262221	2L_6262221_DEL [dm3] 2L_6262221_DEL [dm6]	AAGA	A	2.242e^-4	0.662	INTRON Ddr
2L	19207516	2L_19207516_SNP [dm3] 2L_19207516_SNP [dm6]	A	C	2.243e^-4	0.662	INTRON drl
3L	10378489	3L_10378489_SNP [dm3] 3L_10385389_SNP [dm6]	C	A	2.251e^-4	0.662	INTERGENIC
X	6649543	X_6649543_SNP [dm3] X_6755510_SNP [dm6]	T	G	2.252e^-4	0.662	UTR_3_PRIME CG14439 UPSTREAM CG14438
X	8735206	X_8735206_SNP [dm3] X_8841173_SNP [dm6]	G	A	2.255e^-4	0.662	INTRON CG12075
3L	5693766	3L_5693766_SNP [dm3] 3L_5700666_SNP [dm6]	C	T	2.261e^-4	0.662	INTRON sif
2R	5762919	2R_5762919_SNP [dm3] 2R_9875414_SNP [dm6]	G	A	2.272e^-4	0.662	UTR_5_PRIME CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB INTRON CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20499310	3R_20499310_SNP [dm3] 3R_24673588_SNP [dm6]	G	C	2.273e^-4	0.662	INTRON slo
3L	798006	3L_798006_SNP [dm3] 3L_798006_SNP [dm6]	G	A	2.274e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16844977	X_16844977_SNP [dm3] X_16950944_SNP [dm6]	T	C	2.279e^-4	0.662	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
3R	10445201	3R_10445201_SNP [dm3] 3R_14619479_SNP [dm6]	G	A	2.283e^-4	0.662	UTR_3_PRIME put DOWNSTREAM CG14853 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	11291926	3R_11291926_SNP [dm3] 3R_15466204_SNP [dm6]	C	G	2.284e^-4	0.662	INTRON AdamTS-A
3R	10228062	3R_10228062_SNP [dm3] 3R_14402340_SNP [dm6]	G	T	2.288e^-4	0.662	INTRON cv-c
3R	16961630	3R_16961630_SNP [dm3] 3R_21135908_SNP [dm6]	T	C	2.289e^-4	0.662	SYNONYMOUS_CODING Ubpy UPSTREAM Ubpy
2L	8538798	2L_8538798_SNP [dm3] 2L_8538798_SNP [dm6]	A	G	2.290e^-4	0.662	DOWNSTREAM CG17834 INTRON CG17834
3R	20296799	3R_20296799_SNP [dm3] 3R_24471077_SNP [dm6]	T	C	2.291e^-4	0.662	DOWNSTREAM CG31128 INTERGENIC
3L	1529594	3L_1529594_SNP [dm3] 3L_1529594_SNP [dm6]	T	G	2.293e^-4	0.662	SYNONYMOUS_CODING Ir62a INTRON CG12090
2R	18053144	2R_18053144_SNP [dm3] 2R_22165639_SNP [dm6]	A	G	2.293e^-4	0.662	INTRON a
3L	9412857	3L_9412857_DEL [dm3] 3L_9419757_DEL [dm6]	GATATGG	G	2.294e^-4	0.662	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12630024	3L_12630024_INS [dm3] 3L_12636924_INS [dm6]	T	TT	2.315e^-4	0.662	INTRON CR32111
3L	14508006	3L_14508006_SNP [dm3] 3L_14514906_SNP [dm6]	A	T	2.315e^-4	0.662	INTRON bbg
X	498079	X_498079_SNP [dm3] X_604046_SNP [dm6]	A	C	2.315e^-4	0.662	INTRON CG13366
X	500557	X_500557_SNP [dm3] X_606524_SNP [dm6]	C	T	2.315e^-4	0.662	INTRON CG13366	TF binding site mE1_TFBS_sens
X	502924	X_502924_SNP [dm3] X_608891_SNP [dm6]	A	T	2.315e^-4	0.662	INTRON CG13366
2R	16872416	2R_16872416_SNP [dm3] 2R_20984911_SNP [dm6]	C	G	2.318e^-4	0.662	SYNONYMOUS_CODING CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17951777	3L_17951777_SNP [dm3] 3L_17958677_SNP [dm6]	G	C	2.320e^-4	0.662	INTRON Eip75B
X	510656	X_510656_SNP [dm3] X_616623_SNP [dm6]	T	C	2.321e^-4	0.662	INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	2.323e^-4	0.662	INTERGENIC
3L	14189504	3L_14189504_SNP [dm3] 3L_14196404_SNP [dm6]	A	T	2.323e^-4	0.662	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10457176	3R_10457176_SNP [dm3] 3R_14631454_SNP [dm6]	G	A	2.328e^-4	0.662	INTRON CG7886 & 1 other
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	2.331e^-4	0.662	INTRON Edem2	TF binding site mE1_TFBS_cad
3R	26390325	3R_26390325_SNP [dm3] 3R_30564603_SNP [dm6]	G	C	2.334e^-4	0.662	INTRON tmod
3L	12630125	3L_12630125_SNP [dm3] 3L_12637025_SNP [dm6]	C	G	2.336e^-4	0.662	INTRON CR32111
2R	11795312	2R_11795312_SNP [dm3] 2R_15907807_SNP [dm6]	T	C	2.338e^-4	0.662	INTRON sli
2L	8538837	2L_8538837_SNP [dm3] 2L_8538837_SNP [dm6]	C	T	2.338e^-4	0.662	DOWNSTREAM CG17834 INTRON CG17834
2R	8927242	2R_8927242_SNP [dm3] 2R_13039737_SNP [dm6]	G	A	2.339e^-4	0.662	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	519258	X_519258_SNP [dm3] X_625225_SNP [dm6]	T	C	2.339e^-4	0.662	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15567385	2L_15567385_SNP [dm3] 2L_15567385_SNP [dm6]	T	A	2.339e^-4	0.662	INTRON kek3
3L	16873340	3L_16873340_SNP [dm3] 3L_16880240_SNP [dm6]	G	T	2.346e^-4	0.662	DOWNSTREAM CG32170 INTRON Lmpt
3L	10355750	3L_10355750_SNP [dm3] 3L_10362650_SNP [dm6]	T	C	2.353e^-4	0.662	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14164613	3L_14164613_SNP [dm3] 3L_14171513_SNP [dm6]	G	A	2.354e^-4	0.662	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	519277	X_519277_DEL [dm3] X_625244_DEL [dm6]	TGC	T	2.354e^-4	0.662	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11993417	3R_11993417_SNP [dm3] 3R_16167695_SNP [dm6]	G	T	2.356e^-4	0.662	DOWNSTREAM CR43472 INTRON CG6006	TF binding site BDTNP1_TFBS_twi
3L	12461161	3L_12461161_DEL [dm3] 3L_12468061_DEL [dm6]	CC	C	2.370e^-4	0.664	UPSTREAM eyg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	10201221	2R_10201221_SNP [dm3] 2R_14313716_SNP [dm6]	G	A	2.373e^-4	0.664	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10201249	2R_10201249_INS [dm3] 2R_14313744_INS [dm6]	T	TT	2.376e^-4	0.664	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6735090	3L_6735090_SNP [dm3] 3L_6741990_SNP [dm6]	T	G	2.380e^-4	0.664	UTR_5_PRIME dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	7455489	2L_7455489_SNP [dm3] 2L_7455489_SNP [dm6]	T	C	2.385e^-4	0.664	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA
3R	27473022	3R_27473022_SNP [dm3] 3R_31647300_SNP [dm6]	C	G	2.393e^-4	0.664	INTRON kek6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1438543	2L_1438543_SNP [dm3] 2L_1438543_SNP [dm6]	C	T	2.396e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12061488	3L_12061488_SNP [dm3] 3L_12068388_SNP [dm6]	T	C	2.403e^-4	0.664	INTRON Sema-5c
3L	4147776	3L_4147776_SNP [dm3] 3L_4147776_SNP [dm6]	G	A	2.405e^-4	0.664	UPSTREAM CG1299 INTERGENIC
3R	16726306	3R_16726306_SNP [dm3] 3R_20900584_SNP [dm6]	C	T	2.415e^-4	0.664	INTERGENIC
3L	10419221	3L_10419221_SNP [dm3] 3L_10426121_SNP [dm6]	C	A	2.417e^-4	0.664	INTERGENIC
X	17339606	X_17339606_DEL [dm3] X_17445573_DEL [dm6]	TT	T	2.418e^-4	0.664	DOWNSTREAM p-cup INTERGENIC
2R	13150543	2R_13150543_SNP [dm3] 2R_17263038_SNP [dm6]	G	C	2.418e^-4	0.664	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13916077	2R_13916077_SNP [dm3] 2R_18028572_SNP [dm6]	G	A	2.423e^-4	0.664	INTERGENIC
3L	13034928	3L_13034928_SNP [dm3] 3L_13041828_SNP [dm6]	C	T	2.424e^-4	0.664	UTR_5_PRIME RpS4 UPSTREAM snoRNA:Psi28S-3327a DOWNSTREAM SRm160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	12198303	3L_12198303_SNP [dm3] 3L_12205203_SNP [dm6]	A	G	2.425e^-4	0.664	SYNONYMOUS_CODING CG5626
2L	3877132	2L_3877132_SNP [dm3] 2L_3877132_SNP [dm6]	T	C	2.425e^-4	0.664	INTRON capu
3L	14162808	3L_14162808_SNP [dm3] 3L_14169708_SNP [dm6]	A	C	2.425e^-4	0.664	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8526617	2L_8526617_DEL [dm3] 2L_8526617_DEL [dm6]	AA	A	2.441e^-4	0.665	UTR_3_PRIME lmgB & 1 other DOWNSTREAM Acer	TF binding site mE1_TFBS_cad
2L	15327985	2L_15327985_SNP [dm3] 2L_15327985_SNP [dm6]	C	T	2.441e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	499731	X_499731_SNP [dm3] X_605698_SNP [dm6]	T	C	2.442e^-4	0.665	INTRON CG13366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13916045	2R_13916045_SNP [dm3] 2R_18028540_SNP [dm6]	A	T	2.446e^-4	0.665	INTERGENIC
3R	19066627	3R_19066627_SNP [dm3] 3R_23240905_SNP [dm6]	G	A	2.451e^-4	0.665	UPSTREAM CG4467 INTRON CG4467
3R	26763141	3R_26763141_SNP [dm3] 3R_30937419_SNP [dm6]	A	C	2.453e^-4	0.665	UPSTREAM CG15549 & 1 other INTERGENIC
3L	20549471	3L_20549471_SNP [dm3] 3L_20556371_SNP [dm6]	G	T	2.454e^-4	0.665	INTERGENIC
3L	13049752	3L_13049752_SNP [dm3] 3L_13056652_SNP [dm6]	T	G	2.455e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18536787	X_18536787_SNP [dm3] X_18642754_SNP [dm6]	C	T	2.463e^-4	0.666	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19305005	3R_19305005_SNP [dm3] 3R_23479283_SNP [dm6]	A	G	2.473e^-4	0.667	INTERGENIC
3R	17905158	3R_17905158_SNP [dm3] 3R_22079436_SNP [dm6]	T	A	2.484e^-4	0.669	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
2R	4634615	2R_4634615_SNP [dm3] 2R_8747110_SNP [dm6]	T	C	2.484e^-4	0.669	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3789229	2R_3789229_SNP [dm3] 2R_7901724_SNP [dm6]	G	A	2.497e^-4	0.67	INTRON CG30377	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2308317	2L_2308317_SNP [dm3] 2L_2308317_SNP [dm6]	A	C	2.497e^-4	0.67	SYNONYMOUS_CODING CG16995 DOWNSTREAM CG9967
3R	20393812	3R_20393812_SNP [dm3] 3R_24568090_SNP [dm6]	A	T	2.505e^-4	0.671	INTRON CG13624	TF binding site BDTNP1_TFBS_da
2L	14004503	2L_14004503_SNP [dm3] 2L_14004503_SNP [dm6]	G	C	2.509e^-4	0.671	INTERGENIC
3L	12539996	3L_12539996_SNP [dm3] 3L_12546896_SNP [dm6]	C	T	2.521e^-4	0.672	INTRON sowah
2L	7759399	2L_7759399_SNP [dm3] 2L_7759399_SNP [dm6]	C	T	2.522e^-4	0.672	INTRON CG7196
3R	26588967	3R_26588967_SNP [dm3] 3R_30763245_SNP [dm6]	C	G	2.523e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	7582571	X_7582571_SNP [dm3] X_7688538_SNP [dm6]	G	A	2.529e^-4	0.673	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	15402740	X_15402740_SNP [dm3] X_15508707_SNP [dm6]	G	A	2.537e^-4	0.673	UPSTREAM mir-304 & 1 other DOWNSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18256678	3R_18256678_SNP [dm3] 3R_22430956_SNP [dm6]	C	T	2.538e^-4	0.673	INTRON CG13847
2L	10939598	2L_10939598_SNP [dm3] 2L_10939598_SNP [dm6]	C	T	2.540e^-4	0.673	INTRON dpr2
2R	9961837	2R_9961837_SNP [dm3] 2R_14074332_SNP [dm6]	C	G	2.545e^-4	0.673	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	9356198	3R_9356198_SNP [dm3] 3R_13530476_SNP [dm6]	T	G	2.571e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5288122	3L_5288122_SNP [dm3] 3L_5295022_SNP [dm6]	T	G	2.575e^-4	0.679	INTERGENIC
3R	10457174	3R_10457174_SNP [dm3] 3R_14631452_SNP [dm6]	T	C	2.588e^-4	0.68	INTRON CG7886 & 1 other
2R	14720973	2R_14720973_SNP [dm3] 2R_18833468_SNP [dm6]	A	T	2.589e^-4	0.68	UTR_3_PRIME CG15098 DOWNSTREAM CG15082
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	2.593e^-4	0.68	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
3L	5485833	3L_5485833_SNP [dm3] 3L_5492733_SNP [dm6]	G	C	2.594e^-4	0.68	DOWNSTREAM CR44520 INTERGENIC
2L	9167590	2L_9167590_SNP [dm3] 2L_9167590_SNP [dm6]	T	A	2.597e^-4	0.68	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4890769	3L_4890769_SNP [dm3] 3L_4890769_SNP [dm6]	C	T	2.614e^-4	0.683	INTRON CG17150
2R	19609750	2R_19609750_SNP [dm3] 2R_23722227_SNP [dm6]	G	A	2.616e^-4	0.683	UTR_5_PRIME Sesn INTRON Sesn
2L	1232342	2L_1232342_SNP [dm3] 2L_1232342_SNP [dm6]	G	C	2.619e^-4	0.683	INTERGENIC
2R	14081080	2R_14081080_SNP [dm3] 2R_18193575_SNP [dm6]	C	T	2.625e^-4	0.684	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	6640862	X_6640862_SNP [dm3] X_6746829_SNP [dm6]	T	C	2.633e^-4	0.685	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16581566	3L_16581566_SNP [dm3] 3L_16588466_SNP [dm6]	C	G	2.635e^-4	0.685	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	7449574	2L_7449574_SNP [dm3] 2L_7449574_SNP [dm6]	T	C	2.650e^-4	0.685	UTR_5_PRIME santa-maria INTRON santa-maria
2L	8526190	2L_8526190_SNP [dm3] 2L_8526190_SNP [dm6]	T	A	2.651e^-4	0.685	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526214	2L_8526214_SNP [dm3] 2L_8526214_SNP [dm6]	A	T	2.651e^-4	0.685	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
3L	4242700	3L_4242700_SNP [dm3] 3L_4242700_SNP [dm6]	G	A	2.651e^-4	0.685	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26588949	3R_26588949_SNP [dm3] 3R_30763227_SNP [dm6]	G	A	2.672e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	7587621	2L_7587621_SNP [dm3] 2L_7587621_SNP [dm6]	A	C	2.673e^-4	0.687	INTERGENIC
2L	14502886	2L_14502886_INS [dm3] 2L_14502886_INS [dm6]	T	TATT	2.675e^-4	0.687	INTERGENIC
X	8818178	X_8818178_SNP [dm3] X_8924145_SNP [dm6]	A	G	2.678e^-4	0.687	NON_SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 INTRON rdgA	TF binding site BDTNP1_TFBS_dl
X	18542221	X_18542221_SNP [dm3] X_18648188_SNP [dm6]	A	T	2.682e^-4	0.687	UTR_5_PRIME CG6540 UPSTREAM Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	22751239	3R_22751239_SNP [dm3] 3R_26925517_SNP [dm6]	T	G	2.684e^-4	0.687	INTRON sda
3L	16580561	3L_16580561_SNP [dm3] 3L_16587461_SNP [dm6]	C	T	2.688e^-4	0.687	SYNONYMOUS_CODING CG32163 UPSTREAM Syx8 INTRON CG32163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6262204	2L_6262204_INS [dm3] 2L_6262204_INS [dm6]	T	TGCGAGTACT	2.693e^-4	0.687	INTRON Ddr
3R	10227309	3R_10227309_SNP [dm3] 3R_14401587_SNP [dm6]	A	T	2.693e^-4	0.687	INTRON cv-c
X	18534487	X_18534487_INS [dm3] X_18640454_INS [dm6]	G	GGCG	2.700e^-4	0.688	INTRON Rip11	TF binding site mE1_TFBS_HSA
2R	20145229	2R_20145229_SNP [dm3] 2R_24257706_SNP [dm6]	G	A	2.704e^-4	0.688	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15461899	3R_15461899_SNP [dm3] 3R_19636177_SNP [dm6]	C	A	2.708e^-4	0.688	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2R	13916050	2R_13916050_SNP [dm3] 2R_18028545_SNP [dm6]	T	G	2.712e^-4	0.688	INTERGENIC
2L	18436296	2L_18436296_SNP [dm3] 2L_18436296_SNP [dm6]	G	A	2.722e^-4	0.69	INTERGENIC
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	2.730e^-4	0.691	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	7996663	2L_7996663_SNP [dm3] 2L_7996663_SNP [dm6]	T	C	2.740e^-4	0.693	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
3R	26067612	3R_26067612_SNP [dm3] 3R_30241890_SNP [dm6]	A	G	2.756e^-4	0.695	INTRON CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26589003	3R_26589003_SNP [dm3] 3R_30763281_SNP [dm6]	C	A	2.759e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2208975	2L_2208975_SNP [dm3] 2L_2208975_SNP [dm6]	G	A	2.760e^-4	0.695	START_GAINED CG33124 UTR_5_PRIME CG33124 DOWNSTREAM CG15385
X	16609716	X_16609716_SNP [dm3] X_16715683_SNP [dm6]	C	A	2.771e^-4	0.695	INTRON CG34325
2L	2572161	2L_2572161_SNP [dm3] 2L_2572161_SNP [dm6]	T	C	2.773e^-4	0.695	SYNONYMOUS_CODING Cyp309a2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	8541340	2L_8541340_SNP [dm3] 2L_8541340_SNP [dm6]	T	C	2.773e^-4	0.695	UTR_3_PRIME CG17834 UPSTREAM tRNA:CR31603 & 1 other DOWNSTREAM tRNA:CR31604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13951467	2L_13951467_SNP [dm3] 2L_13951467_SNP [dm6]	G	T	2.777e^-4	0.695	INTRON Ance-3
2R	13884820	2R_13884820_SNP [dm3] 2R_17997315_SNP [dm6]	C	A	2.782e^-4	0.696	INTRON dpr13
2R	8661893	2R_8661893_SNP [dm3] 2R_12774388_SNP [dm6]	T	A	2.788e^-4	0.696	INTERGENIC
2R	12094885	2R_12094885_SNP [dm3] 2R_16207380_SNP [dm6]	T	A	2.800e^-4	0.698	DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	16873306	3L_16873306_SNP [dm3] 3L_16880206_SNP [dm6]	A	T	2.801e^-4	0.698	DOWNSTREAM CG32170 INTRON Lmpt
3L	10686651	3L_10686651_SNP [dm3] 3L_10693551_SNP [dm6]	G	T	2.805e^-4	0.698	UPSTREAM CG33493 DOWNSTREAM CG11811 & 1 other INTRON CG6463	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3L	10357987	3L_10357987_SNP [dm3] 3L_10364887_SNP [dm6]	A	T	2.817e^-4	0.7	UPSTREAM mir-276a EXON CR44327
2L	2584369	2L_2584369_SNP [dm3] 2L_2584369_SNP [dm6]	A	C	2.824e^-4	0.7	SYNONYMOUS_CODING Drp1
2R	10201202	2R_10201202_SNP [dm3] 2R_14313697_SNP [dm6]	A	C	2.827e^-4	0.7	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19066648	3R_19066648_SNP [dm3] 3R_23240926_SNP [dm6]	A	G	2.830e^-4	0.7	UPSTREAM CG4467 INTRON CG4467
3R	22696118	3R_22696118_SNP [dm3] 3R_26870396_SNP [dm6]	T	C	2.846e^-4	0.701	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19489507	2R_19489507_SNP [dm3] 2R_23601984_SNP [dm6]	T	C	2.848e^-4	0.701	UTR_3_PRIME CG43209 UPSTREAM IM18 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14160402	3L_14160402_SNP [dm3] 3L_14167302_SNP [dm6]	T	A	2.848e^-4	0.701	INTERGENIC	regulatory region REDfly_CRMs
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	2.854e^-4	0.701	SYNONYMOUS_CODING Dg
3L	4144161	3L_4144161_SNP [dm3] 3L_4144161_SNP [dm6]	A	G	2.858e^-4	0.701	INTRON CG32260
2L	7459275	2L_7459275_SNP [dm3] 2L_7459275_SNP [dm6]	G	A	2.862e^-4	0.701	UPSTREAM Gr28b INTRON Gr28b
2L	6262233	2L_6262233_SNP [dm3] 2L_6262233_SNP [dm6]	G	A	2.865e^-4	0.701	INTRON Ddr
2L	5226614	2L_5226614_SNP [dm3] 2L_5226614_SNP [dm6]	G	A	2.868e^-4	0.701	INTRON tkv
3R	26907722	3R_26907722_SNP [dm3] 3R_31082000_SNP [dm6]	A	G	2.868e^-4	0.701	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8514687	2R_8514687_SNP [dm3] 2R_12627182_SNP [dm6]	C	A	2.874e^-4	0.702	INTRON CG17760
2R	7057413	2R_7057413_SNP [dm3] 2R_11169908_SNP [dm6]	G	A	2.886e^-4	0.704	INTRON shn & 1 other
2R	8701364	2R_8701364_SNP [dm3] 2R_12813859_SNP [dm6]	A	G	2.902e^-4	0.707	INTERGENIC
2L	18926695	2L_18926695_SNP [dm3] 2L_18926695_SNP [dm6]	G	A	2.905e^-4	0.707	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4579246	3L_4579246_SNP [dm3] 3L_4579246_SNP [dm6]	A	C	2.927e^-4	0.711	INTRON CG42540
3L	17935893	3L_17935893_SNP [dm3] 3L_17942793_SNP [dm6]	C	T	2.937e^-4	0.712	INTRON CG43174
2L	3832941	2L_3832941_SNP [dm3] 2L_3832941_SNP [dm6]	A	T	2.942e^-4	0.712	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4891470	3L_4891470_SNP [dm3] 3L_4891470_SNP [dm6]	A	T	2.945e^-4	0.712	SYNONYMOUS_CODING CG17150
2L	8540435	2L_8540435_SNP [dm3] 2L_8540435_SNP [dm6]	C	A	2.947e^-4	0.712	INTRON CG17834
2R	3356324	2R_3356324_SNP [dm3] 2R_7468819_SNP [dm6]	C	T	2.951e^-4	0.712	INTRON Aldh-III
2R	18864425	2R_18864425_SNP [dm3] 2R_22976902_SNP [dm6]	A	G	2.954e^-4	0.712	INTERGENIC
2L	2308337	2L_2308337_SNP [dm3] 2L_2308337_SNP [dm6]	A	C	2.963e^-4	0.713	SYNONYMOUS_CODING CG16995 DOWNSTREAM CG9967
3R	16412053	3R_16412053_SNP [dm3] 3R_20586331_SNP [dm6]	C	G	2.967e^-4	0.713	UTR_3_PRIME Sep2 UPSTREAM CG16953	TF binding site mE1_TFBS_chinmo
2R	18236089	2R_18236089_SNP [dm3] 2R_22348584_SNP [dm6]	C	T	2.975e^-4	0.714	NON_SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
2R	11879194	2R_11879194_SNP [dm3] 2R_15991689_SNP [dm6]	C	T	2.986e^-4	0.716	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	8506498	2L_8506498_SNP [dm3] 2L_8506498_SNP [dm6]	A	T	2.993e^-4	0.716	INTRON Dh31
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	2.995e^-4	0.716	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16946944	3R_16946944_SNP [dm3] 3R_21121222_SNP [dm6]	G	A	2.998e^-4	0.716	SPLICE_SITE_REGION slmb INTRON slmb
3R	26075422	3R_26075422_SNP [dm3] 3R_30249700_SNP [dm6]	G	A	3.016e^-4	0.72	SYNONYMOUS_CODING CG34299	TF binding site mE1_TFBS_inv
X	18534606	X_18534606_SNP [dm3] X_18640573_SNP [dm6]	C	G	3.034e^-4	0.723	INTRON Rip11
2R	3733222	2R_3733222_SNP [dm3] 2R_7845717_SNP [dm6]	A	G	3.044e^-4	0.724	INTRON Dgk
3L	17829178	3L_17829178_SNP [dm3] 3L_17836078_SNP [dm6]	G	A	3.048e^-4	0.724	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
3L	14544507	3L_14544507_SNP [dm3] 3L_14551407_SNP [dm6]	T	A	3.050e^-4	0.724	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	12385903	2L_12385903_SNP [dm3] 2L_12385903_SNP [dm6]	G	A	3.053e^-4	0.724	INTRON bru-2
2R	14451725	2R_14451725_DEL [dm3] 2R_18564220_DEL [dm6]	CCGCGTC	C	3.062e^-4	0.725	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15978285	2R_15978285_SNP [dm3] 2R_20090780_SNP [dm6]	C	G	3.069e^-4	0.725	UPSTREAM CR44633 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13103596	3L_13103596_INS [dm3] 3L_13110496_INS [dm6]	C	CTC	3.078e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	15978276	2R_15978276_SNP [dm3] 2R_20090771_SNP [dm6]	C	A	3.081e^-4	0.725	UPSTREAM CR44633 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15978281	2R_15978281_SNP [dm3] 2R_20090776_SNP [dm6]	T	C	3.081e^-4	0.725	UPSTREAM CR44633 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13447307	3L_13447307_SNP [dm3] 3L_13454207_SNP [dm6]	G	A	3.090e^-4	0.725	INTRON CG10738
2R	10825433	2R_10825433_SNP [dm3] 2R_14937928_SNP [dm6]	G	A	3.092e^-4	0.725	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12856180	3L_12856180_DEL [dm3] 3L_12863080_DEL [dm6]	TT	T	3.094e^-4	0.725	UPSTREAM CG10943 INTERGENIC
2R	13183128	2R_13183128_SNP [dm3] 2R_17295623_SNP [dm6]	T	C	3.094e^-4	0.725	INTRON mbl
2R	3527006	2R_3527006_SNP [dm3] 2R_7639501_SNP [dm6]	G	A	3.095e^-4	0.725	INTRON CG43340
3R	10161763	3R_10161763_SNP [dm3] 3R_14336041_SNP [dm6]	C	T	3.105e^-4	0.726	INTRON NK7.1
3L	7097388	3L_7097388_SNP [dm3] 3L_7104288_SNP [dm6]	C	A	3.115e^-4	0.727	INTRON form3
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	3.115e^-4	0.727	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	10637970	2L_10637970_SNP [dm3] 2L_10637970_SNP [dm6]	C	A	3.120e^-4	0.727	UPSTREAM CR45351 INTRON CG7329
3L	1108295	3L_1108295_SNP [dm3] 3L_1108295_SNP [dm6]	T	A	3.130e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12600679	2R_12600679_SNP [dm3] 2R_16713174_SNP [dm6]	C	A	3.131e^-4	0.727	INTRON CG30463
2R	7887129	2R_7887129_SNP [dm3] 2R_11999624_SNP [dm6]	A	T	3.132e^-4	0.727	INTERGENIC
X	18541368	X_18541368_SNP [dm3] X_18647335_SNP [dm6]	A	T	3.136e^-4	0.727	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	26075416	3R_26075416_SNP [dm3] 3R_30249694_SNP [dm6]	T	C	3.154e^-4	0.729	SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
X	519274	X_519274_SNP [dm3] X_625241_SNP [dm6]	C	A	3.154e^-4	0.729	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12712619	2R_12712619_SNP [dm3] 2R_16825114_SNP [dm6]	A	T	3.156e^-4	0.729	UTR_5_PRIME CG34459 UPSTREAM CG34459 INTRON CG34459
3L	1108296	3L_1108296_SNP [dm3] 3L_1108296_SNP [dm6]	A	G	3.169e^-4	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7509532	3R_7509532_SNP [dm3] 3R_11683810_SNP [dm6]	A	G	3.174e^-4	0.731	DOWNSTREAM CG6834 INTRON CG6830
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	3.176e^-4	0.731	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	2636749	3R_2636749_SNP [dm3] 3R_6811027_SNP [dm6]	G	A	3.180e^-4	0.731	INTRON CR42651	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	15255649	2L_15255649_SNP [dm3] 2L_15255649_SNP [dm6]	T	A	3.192e^-4	0.731	SYNONYMOUS_CODING Pol32 UPSTREAM l_2_35Cc DOWNSTREAM dao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	504181	X_504181_SNP [dm3] X_610148_SNP [dm6]	C	G	3.193e^-4	0.731	DOWNSTREAM CG13366 INTRON CG13366
3R	2661718	3R_2661718_SNP [dm3] 3R_6835996_SNP [dm6]	C	T	3.198e^-4	0.731	INTRON Scr	regulatory region REDfly_CRMs
X	16844033	X_16844033_SNP [dm3] X_16950000_SNP [dm6]	T	A	3.200e^-4	0.731	INTRON RhoGAP15B
X	18534515	X_18534515_SNP [dm3] X_18640482_SNP [dm6]	C	G	3.211e^-4	0.731	INTRON Rip11	TF binding site mE1_TFBS_HSA
2R	7720576	2R_7720576_SNP [dm3] 2R_11833071_SNP [dm6]	G	T	3.211e^-4	0.731	INTRON Sobp
2R	20156803	2R_20156803_SNP [dm3] 2R_24269280_SNP [dm6]	T	G	3.212e^-4	0.731	UPSTREAM CG13577 INTERGENIC
3R	14059152	3R_14059152_SNP [dm3] 3R_18233430_SNP [dm6]	A	G	3.213e^-4	0.731	INTERGENIC	regulatory region REDfly_CRMs
3L	5892408	3L_5892408_SNP [dm3] 3L_5899308_SNP [dm6]	G	A	3.221e^-4	0.732	SYNONYMOUS_CODING CG5592 UPSTREAM CG32409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	11880043	2R_11880043_SNP [dm3] 2R_15992538_SNP [dm6]	T	A	3.224e^-4	0.732	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14507979	3L_14507979_SNP [dm3] 3L_14514879_SNP [dm6]	G	C	3.236e^-4	0.733	INTRON bbg
2L	7206255	2L_7206255_SNP [dm3] 2L_7206255_SNP [dm6]	T	C	3.239e^-4	0.733	UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	3.239e^-4	0.733	INTRON Dh31
3R	9896811	3R_9896811_SNP [dm3] 3R_14071089_SNP [dm6]	T	G	3.247e^-4	0.733	INTRON foxo
2R	13916057	2R_13916057_SNP [dm3] 2R_18028552_SNP [dm6]	A	G	3.249e^-4	0.733	INTERGENIC
2R	17373213	2R_17373213_SNP [dm3] 2R_21485708_SNP [dm6]	C	T	3.261e^-4	0.735	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12267602	2R_12267602_SNP [dm3] 2R_16380097_SNP [dm6]	C	A	3.267e^-4	0.735	UPSTREAM CG43187 EXON CR45316 & 1 other
2L	7121818	2L_7121818_SNP [dm3] 2L_7121818_SNP [dm6]	T	C	3.269e^-4	0.735	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18689417	2R_18689417_SNP [dm3] 2R_22801912_SNP [dm6]	T	C	3.270e^-4	0.735	UTR_3_PRIME blw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16412052	3R_16412052_SNP [dm3] 3R_20586330_SNP [dm6]	G	A	3.281e^-4	0.736	UTR_3_PRIME Sep2 UPSTREAM CG16953	TF binding site mE1_TFBS_chinmo
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	3.289e^-4	0.737	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22245950	3R_22245950_SNP [dm3] 3R_26420228_SNP [dm6]	C	T	3.300e^-4	0.738	INTERGENIC
3L	4688192	3L_4688192_SNP [dm3] 3L_4688192_SNP [dm6]	T	C	3.314e^-4	0.738	SYNONYMOUS_CODING CG7514 UPSTREAM axo DOWNSTREAM CG18418	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	3.319e^-4	0.738	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	6433920	3L_6433920_SNP [dm3] 3L_6440820_SNP [dm6]	C	T	3.321e^-4	0.738	INTRON CG42747
2R	12778438	2R_12778438_SNP [dm3] 2R_16890933_SNP [dm6]	T	A	3.325e^-4	0.738	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
3L	12140769	3L_12140769_SNP [dm3] 3L_12147669_SNP [dm6]	C	A	3.325e^-4	0.738	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	16986212	3R_16986212_SNP [dm3] 3R_21160490_SNP [dm6]	G	T	3.327e^-4	0.738	NON_SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_sens
3L	18262778	3L_18262778_SNP [dm3] 3L_18269678_SNP [dm6]	G	A	3.328e^-4	0.738	INTERGENIC
X	18536975	X_18536975_SNP [dm3] X_18642942_SNP [dm6]	T	C	3.337e^-4	0.738	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11351606	3L_11351606_SNP [dm3] 3L_11358506_SNP [dm6]	G	C	3.349e^-4	0.738	INTERGENIC
2R	14672098	2R_14672098_SNP [dm3] 2R_18784593_SNP [dm6]	T	C	3.351e^-4	0.738	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	17697430	2L_17697430_SNP [dm3] 2L_17697430_SNP [dm6]	C	T	3.352e^-4	0.738	INTRON CadN
3R	16820990	3R_16820990_SNP [dm3] 3R_20995268_SNP [dm6]	T	C	3.354e^-4	0.738	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12385825	2L_12385825_SNP [dm3] 2L_12385825_SNP [dm6]	T	G	3.355e^-4	0.738	INTRON bru-2
3L	1382066	3L_1382066_SNP [dm3] 3L_1382066_SNP [dm6]	G	A	3.359e^-4	0.738	INTRON Ptp61F & 1 other
3L	8605787	3L_8605787_DEL [dm3] 3L_8612687_DEL [dm6]	TCC	T	3.361e^-4	0.738	INTRON CG6282
2L	7121771	2L_7121771_SNP [dm3] 2L_7121771_SNP [dm6]	C	T	3.361e^-4	0.738	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	9897361	3R_9897361_SNP [dm3] 3R_14071639_SNP [dm6]	G	T	3.365e^-4	0.738	INTRON foxo
3L	17192910	3L_17192910_SNP [dm3] 3L_17199810_SNP [dm6]	T	C	3.385e^-4	0.74	INTRON Rbp6
2L	1657752	2L_1657752_SNP [dm3] 2L_1657752_SNP [dm6]	T	G	3.391e^-4	0.74	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2R	12231356	2R_12231356_SNP [dm3] 2R_16343851_SNP [dm6]	A	C	3.393e^-4	0.74	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	3787144	3L_3787144_SNP [dm3] 3L_3787144_SNP [dm6]	T	G	3.395e^-4	0.74	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12663140	2R_12663140_SNP [dm3] 2R_16775635_SNP [dm6]	T	G	3.396e^-4	0.74	UTR_3_PRIME Arp53D
3L	20072219	3L_20072219_SNP [dm3] 3L_20079119_SNP [dm6]	G	T	3.412e^-4	0.74	INTRON sNPF-R
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	3.413e^-4	0.74	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12027401	2R_12027401_SNP [dm3] 2R_16139896_SNP [dm6]	A	G	3.415e^-4	0.74	INTRON Got1
2L	10915601	2L_10915601_SNP [dm3] 2L_10915601_SNP [dm6]	C	T	3.416e^-4	0.74	INTERGENIC
3L	4891374	3L_4891374_SNP [dm3] 3L_4891374_SNP [dm6]	A	C	3.418e^-4	0.74	SYNONYMOUS_CODING CG17150
2L	8092629	2L_8092629_SNP [dm3] 2L_8092629_SNP [dm6]	T	A	3.420e^-4	0.74	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8092630	2L_8092630_SNP [dm3] 2L_8092630_SNP [dm6]	A	T	3.420e^-4	0.74	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9921547	3R_9921547_SNP [dm3] 3R_14095825_SNP [dm6]	G	A	3.439e^-4	0.741	INTRON CCHa1
2L	13695954	2L_13695954_SNP [dm3] 2L_13695954_SNP [dm6]	C	T	3.442e^-4	0.741	INTRON CG31814
2R	8736836	2R_8736836_SNP [dm3] 2R_12849331_SNP [dm6]	C	A	3.447e^-4	0.741	UPSTREAM CG30486 DOWNSTREAM CG17574 & 1 other INTERGENIC
3R	10642183	3R_10642183_SNP [dm3] 3R_14816461_SNP [dm6]	A	G	3.448e^-4	0.741	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	12971981	3L_12971981_SNP [dm3] 3L_12978881_SNP [dm6]	A	G	3.452e^-4	0.741	INTERGENIC
2R	15176003	2R_15176003_SNP [dm3] 2R_19288498_SNP [dm6]	A	C	3.457e^-4	0.741	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
2R	11815864	2R_11815864_SNP [dm3] 2R_15928359_SNP [dm6]	A	G	3.468e^-4	0.741	UPSTREAM bdg INTRON bdg
2L	9240960	2L_9240960_SNP [dm3] 2L_9240960_SNP [dm6]	T	A	3.471e^-4	0.741	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_chinmo
2R	7117314	2R_7117314_SNP [dm3] 2R_11229809_SNP [dm6]	G	A	3.471e^-4	0.741	SYNONYMOUS_CODING metro	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22358559	3L_22358559_SNP [dm3] 3L_22365459_SNP [dm6]	A	T	3.472e^-4	0.741	INTRON Ten-m	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	2012244	2L_2012244_SNP [dm3] 2L_2012244_SNP [dm6]	C	T	3.479e^-4	0.741	DOWNSTREAM tRNA:CR31669 INTRON CG4238
2R	16456979	2R_16456979_SNP [dm3] 2R_20569474_SNP [dm6]	C	T	3.483e^-4	0.741	INTRON qsm	TF binding site BDTNP1_TFBS_prd
3L	12198242	3L_12198242_SNP [dm3] 3L_12205142_SNP [dm6]	C	T	3.486e^-4	0.741	NON_SYNONYMOUS_CODING CG5626
3R	14900144	3R_14900144_SNP [dm3] 3R_19074422_SNP [dm6]	T	G	3.487e^-4	0.741	INTRON cdi
2L	2887670	2L_2887670_SNP [dm3] 2L_2887670_SNP [dm6]	T	C	3.488e^-4	0.741	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	19066380	3R_19066380_SNP [dm3] 3R_23240658_SNP [dm6]	G	A	3.488e^-4	0.741	UPSTREAM CG4467 INTRON CG4467
3L	1108298	3L_1108298_SNP [dm3] 3L_1108298_SNP [dm6]	A	G	3.494e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10744081	3R_10744081_SNP [dm3] 3R_14918359_SNP [dm6]	A	G	3.502e^-4	0.741	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_inv
X	21153218	X_21153218_SNP [dm3] X_21282191_SNP [dm6]	T	A	3.505e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1108288	3L_1108288_SNP [dm3] 3L_1108288_SNP [dm6]	A	C	3.507e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17973116	3L_17973116_SNP [dm3] 3L_17980016_SNP [dm6]	G	T	3.510e^-4	0.741	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	6798827	2L_6798827_DEL [dm3] 2L_6798827_DEL [dm6]	AA	A	3.513e^-4	0.741	UTR_5_PRIME nrv2 UPSTREAM nrv2 & 2 others	regulatory region REDfly_CRMs
3L	18024426	3L_18024426_SNP [dm3] 3L_18031326_SNP [dm6]	A	G	3.518e^-4	0.741	INTRON Eip75B
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	3.521e^-4	0.741	INTRON CG17834
2R	16872367	2R_16872367_SNP [dm3] 2R_20984862_SNP [dm6]	G	A	3.534e^-4	0.743	SYNONYMOUS_CODING CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4579243	3L_4579243_SNP [dm3] 3L_4579243_SNP [dm6]	G	C	3.543e^-4	0.744	INTRON CG42540
3R	22895481	3R_22895481_INS [dm3] 3R_27069759_INS [dm6]	T	TGGCT	3.551e^-4	0.745	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10929137	2L_10929137_SNP [dm3] 2L_10929137_SNP [dm6]	T	C	3.559e^-4	0.745	INTRON dpr2
2L	2241569	2L_2241569_DEL [dm3] 2L_2241569_DEL [dm6]	AGCCCA	A	3.570e^-4	0.745	UPSTREAM Tengl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5968832	2L_5968832_SNP [dm3] 2L_5968832_SNP [dm6]	C	T	3.575e^-4	0.745	SYNONYMOUS_CODING Ucp4C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4793151	3R_4793151_SNP [dm3] 3R_8967429_SNP [dm6]	T	C	3.576e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8458965	2R_8458965_SNP [dm3] 2R_12571460_SNP [dm6]	C	T	3.579e^-4	0.745	SYNONYMOUS_CODING stil UPSTREAM ClC-b
2L	3887036	2L_3887036_SNP [dm3] 2L_3887036_SNP [dm6]	G	T	3.583e^-4	0.745	SYNONYMOUS_CODING capu INTRON capu
2R	11888718	2R_11888718_SNP [dm3] 2R_16001213_SNP [dm6]	G	A	3.591e^-4	0.745	UTR_5_PRIME CG8370 & 1 other UPSTREAM ATPCL & 1 other	TF binding site BDTNP1_TFBS_dl
2L	6591451	2L_6591451_SNP [dm3] 2L_6591451_SNP [dm6]	A	C	3.594e^-4	0.745	INTRON CG11319
3L	4888942	3L_4888942_SNP [dm3] 3L_4888942_SNP [dm6]	C	T	3.596e^-4	0.745	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	12197362	3L_12197362_SNP [dm3] 3L_12204262_SNP [dm6]	T	A	3.602e^-4	0.745	UTR_3_PRIME CG5626 UPSTREAM Adk1
3L	16873331	3L_16873331_SNP [dm3] 3L_16880231_SNP [dm6]	A	C	3.602e^-4	0.745	DOWNSTREAM CG32170 INTRON Lmpt
3R	11988507	3R_11988507_SNP [dm3] 3R_16162785_SNP [dm6]	C	T	3.603e^-4	0.745	INTRON CG6006
3R	9898872	3R_9898872_SNP [dm3] 3R_14073150_SNP [dm6]	A	G	3.605e^-4	0.745	INTRON foxo
3L	13049836	3L_13049836_SNP [dm3] 3L_13056736_SNP [dm6]	C	T	3.608e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15462650	3R_15462650_SNP [dm3] 3R_19636928_SNP [dm6]	A	C	3.614e^-4	0.745	SYNONYMOUS_CODING subdued
2R	6844574	2R_6844574_SNP [dm3] 2R_10957069_SNP [dm6]	G	A	3.615e^-4	0.745	INTERGENIC
X	19093873	X_19093873_INS [dm3] X_19199840_INS [dm6]	G	GGG	3.625e^-4	0.746	UTR_3_PRIME CG7990 INTRON CG7990
3L	4242659	3L_4242659_SNP [dm3] 3L_4242659_SNP [dm6]	G	C	3.628e^-4	0.746	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	3.631e^-4	0.746	INTRON Dh31
3R	5236447	3R_5236447_SNP [dm3] 3R_9410725_SNP [dm6]	A	G	3.634e^-4	0.746	UTR_3_PRIME Task7 UPSTREAM betaTub85D
3L	10377711	3L_10377711_SNP [dm3] 3L_10384611_SNP [dm6]	T	C	3.669e^-4	0.752	INTERGENIC
3L	16583798	3L_16583798_SNP [dm3] 3L_16590698_SNP [dm6]	C	T	3.676e^-4	0.752	NON_SYNONYMOUS_CODING tra UTR_3_PRIME tra DOWNSTREAM l_3_73Ah & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	643950	2L_643950_SNP [dm3] 2L_643950_SNP [dm6]	G	A	3.678e^-4	0.752	SYNONYMOUS_CODING ds
2R	9451276	2R_9451276_DEL [dm3] 2R_13563771_DEL [dm6]	CGGTTGAGCGC...	C	3.680e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	16563318	3L_16563318_SNP [dm3] 3L_16570218_SNP [dm6]	C	T	3.689e^-4	0.753	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7472340	2L_7472340_SNP [dm3] 2L_7472340_SNP [dm6]	A	G	3.699e^-4	0.753	UTR_3_PRIME CG6055 DOWNSTREAM Ziz
2L	8534074	2L_8534074_SNP [dm3] 2L_8534074_SNP [dm6]	C	T	3.702e^-4	0.753	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	8569972	2L_8569972_SNP [dm3] 2L_8569972_SNP [dm6]	C	A	3.703e^-4	0.753	UPSTREAM tRNA:CR31895 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15791732	3R_15791732_SNP [dm3] 3R_19966010_SNP [dm6]	A	T	3.711e^-4	0.754	INTRON Hs6st
2L	18547403	2L_18547403_SNP [dm3] 2L_18547403_SNP [dm6]	C	G	3.714e^-4	0.754	INTRON Pde11
2L	8517405	2L_8517405_SNP [dm3] 2L_8517405_SNP [dm6]	G	T	3.722e^-4	0.755	UPSTREAM CG13090 & 1 other DOWNSTREAM PIG-U INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	3.729e^-4	0.755	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	12098776	3L_12098776_SNP [dm3] 3L_12105676_SNP [dm6]	T	C	3.734e^-4	0.755	INTERGENIC
2R	17272502	2R_17272502_SNP [dm3] 2R_21384997_SNP [dm6]	A	G	3.745e^-4	0.755	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	13184183	2R_13184183_SNP [dm3] 2R_17296678_SNP [dm6]	A	G	3.749e^-4	0.755	INTRON mbl
2R	12231895	2R_12231895_DEL [dm3] 2R_16344390_DEL [dm6]	ATTTAAAA	A	3.755e^-4	0.755	UTR_5_PRIME Nup62 UPSTREAM Nup62 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
3L	6389265	3L_6389265_SNP [dm3] 3L_6396165_SNP [dm6]	T	A	3.761e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_inv
X	9331523	X_9331523_SNP [dm3] X_9437490_SNP [dm6]	C	A	3.761e^-4	0.755	INTRON mgl
3L	14298323	3L_14298323_SNP [dm3] 3L_14305223_SNP [dm6]	T	C	3.764e^-4	0.755	INTRON fz
3L	14298349	3L_14298349_SNP [dm3] 3L_14305249_SNP [dm6]	A	C	3.764e^-4	0.755	INTRON fz
3L	14162287	3L_14162287_SNP [dm3] 3L_14169187_SNP [dm6]	T	C	3.769e^-4	0.755	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	14760139	2R_14760139_SNP [dm3] 2R_18872634_SNP [dm6]	T	A	3.770e^-4	0.755	INTERGENIC
2L	14021464	2L_14021464_SNP [dm3] 2L_14021464_SNP [dm6]	T	C	3.773e^-4	0.755	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6568382	2R_6568382_SNP [dm3] 2R_10680877_SNP [dm6]	C	A	3.782e^-4	0.755	INTRON stan	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17599461	2R_17599461_SNP [dm3] 2R_21711956_SNP [dm6]	G	C	3.786e^-4	0.755	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19215034	2L_19215034_SNP [dm3] 2L_19215034_SNP [dm6]	C	A	3.787e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	533172	X_533172_SNP [dm3] X_639139_SNP [dm6]	A	T	3.792e^-4	0.755	INTRON su_s_
3R	4842738	3R_4842738_SNP [dm3] 3R_9017016_SNP [dm6]	G	A	3.795e^-4	0.755	UTR_3_PRIME tgo DOWNSTREAM tgo & 1 other
3L	4889547	3L_4889547_SNP [dm3] 3L_4889547_SNP [dm6]	A	T	3.797e^-4	0.755	SPLICE_SITE_REGION CG17150 INTRON CG17150
2R	7116203	2R_7116203_SNP [dm3] 2R_11228698_SNP [dm6]	T	A	3.803e^-4	0.756	INTRON metro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	17829802	3L_17829802_DEL [dm3] 3L_17836702_DEL [dm6]	AACTGA	A	3.818e^-4	0.758	INTRON Grd
2R	13150907	2R_13150907_SNP [dm3] 2R_17263402_SNP [dm6]	T	A	3.828e^-4	0.758	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9756107	2R_9756107_INS [dm3] 2R_13868602_INS [dm6]	T	TATTTTTTTTTGGAT...	3.828e^-4	0.758	INTRON shot
3L	5210079	3L_5210079_SNP [dm3] 3L_5216979_SNP [dm6]	C	T	3.831e^-4	0.758	INTRON shep
3L	4058528	3L_4058528_SNP [dm3] 3L_4058528_SNP [dm6]	G	A	3.843e^-4	0.76	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	16873512	3L_16873512_SNP [dm3] 3L_16880412_SNP [dm6]	T	C	3.855e^-4	0.761	INTRON Lmpt
3L	18564762	3L_18564762_SNP [dm3] 3L_18571662_SNP [dm6]	G	T	3.865e^-4	0.762	INTRON AstC-R1
2L	14911074	2L_14911074_SNP [dm3] 2L_14911074_SNP [dm6]	A	C	3.870e^-4	0.762	INTRON CG42313
2R	12663435	2R_12663435_SNP [dm3] 2R_16775930_SNP [dm6]	T	A	3.876e^-4	0.762	DOWNSTREAM Arp53D INTERGENIC
3L	17981600	3L_17981600_SNP [dm3] 3L_17988500_SNP [dm6]	T	G	3.882e^-4	0.762	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17981729	3L_17981729_SNP [dm3] 3L_17988629_SNP [dm6]	T	A	3.882e^-4	0.762	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14189503	3L_14189503_SNP [dm3] 3L_14196403_SNP [dm6]	G	A	3.885e^-4	0.762	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11627791	3L_11627791_SNP [dm3] 3L_11634691_SNP [dm6]	A	G	3.896e^-4	0.763	UTR_5_PRIME CG32091
2R	12124334	2R_12124334_SNP [dm3] 2R_16236829_SNP [dm6]	G	A	3.898e^-4	0.763	UTR_5_PRIME CG3687
X	11663068	X_11663068_DEL [dm3] X_11769035_DEL [dm6]	ATGAAA	A	3.900e^-4	0.763	UTR_3_PRIME m DOWNSTREAM dy
2L	8506691	2L_8506691_SNP [dm3] 2L_8506691_SNP [dm6]	G	A	3.904e^-4	0.763	UTR_5_PRIME Dh31
2L	5633384	2L_5633384_SNP [dm3] 2L_5633384_SNP [dm6]	C	T	3.913e^-4	0.763	UPSTREAM CR44822 INTRON CG31646
3R	16576220	3R_16576220_SNP [dm3] 3R_20750498_SNP [dm6]	T	A	3.925e^-4	0.763	INTRON CG42322
2R	17372408	2R_17372408_SNP [dm3] 2R_21484903_SNP [dm6]	A	G	3.926e^-4	0.763	SYNONYMOUS_CODING Sara
3L	16873365	3L_16873365_SNP [dm3] 3L_16880265_SNP [dm6]	C	G	3.929e^-4	0.763	DOWNSTREAM CG32170 INTRON Lmpt
3R	16780950	3R_16780950_SNP [dm3] 3R_20955228_SNP [dm6]	T	A	3.931e^-4	0.763	INTRON Atpalpha
2L	8190831	2L_8190831_DEL [dm3] 2L_8190831_DEL [dm6]	GTCGAG	G	3.935e^-4	0.763	UTR_3_PRIME CG8475 UPSTREAM CG34134 DOWNSTREAM CG8475 & 1 other	TF binding site mE1_TFBS_cad
2R	11750944	2R_11750944_SNP [dm3] 2R_15863439_SNP [dm6]	T	C	3.937e^-4	0.763	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5941636	3L_5941636_SNP [dm3] 3L_5948536_SNP [dm6]	C	T	3.946e^-4	0.763	INTRON CG33993
3R	10643632	3R_10643632_SNP [dm3] 3R_14817910_SNP [dm6]	A	T	3.950e^-4	0.763	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12299940	3L_12299940_SNP [dm3] 3L_12306840_SNP [dm6]	C	A	3.952e^-4	0.763	INTERGENIC
2L	8506434	2L_8506434_DEL [dm3] 2L_8506434_DEL [dm6]	TA	T	3.956e^-4	0.763	INTRON Dh31
2L	8680732	2L_8680732_SNP [dm3] 2L_8680732_SNP [dm6]	A	T	3.957e^-4	0.763	UPSTREAM CG9287 DOWNSTREAM CG9289 INTERGENIC
X	18534494	X_18534494_SNP [dm3] X_18640461_SNP [dm6]	A	T	3.964e^-4	0.763	INTRON Rip11	TF binding site mE1_TFBS_HSA
2L	7453430	2L_7453430_SNP [dm3] 2L_7453430_SNP [dm6]	C	T	3.970e^-4	0.763	INTRON Gr28a
2R	7021537	2R_7021537_SNP [dm3] 2R_11134032_SNP [dm6]	C	G	3.977e^-4	0.763	INTERGENIC
3L	11429295	3L_11429295_SNP [dm3] 3L_11436195_SNP [dm6]	A	T	3.986e^-4	0.763	UPSTREAM CG6149 EXON CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	776220	2L_776220_SNP [dm3] 2L_776220_SNP [dm6]	C	A	3.987e^-4	0.763	UPSTREAM CG13946 INTERGENIC
X	6641044	X_6641044_SNP [dm3] X_6747011_SNP [dm6]	A	G	3.990e^-4	0.763	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4242526	3L_4242526_SNP [dm3] 3L_4242526_SNP [dm6]	T	C	3.991e^-4	0.763	UTR_3_PRIME CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16580602	3R_16580602_SNP [dm3] 3R_20754880_SNP [dm6]	T	G	3.996e^-4	0.763	INTRON CG42322	TF binding site mE1_TFBS_sens
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	4.002e^-4	0.763	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13103443	3L_13103443_SNP [dm3] 3L_13110343_SNP [dm6]	A	T	4.003e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10227278	3R_10227278_SNP [dm3] 3R_14401556_SNP [dm6]	A	C	4.007e^-4	0.763	INTRON cv-c
2R	12471959	2R_12471959_SNP [dm3] 2R_16584454_SNP [dm6]	C	T	4.022e^-4	0.763	SYNONYMOUS_CODING Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6649522	X_6649522_SNP [dm3] X_6755489_SNP [dm6]	T	A	4.024e^-4	0.763	UTR_3_PRIME CG14439 UPSTREAM CG14438
X	6649524	X_6649524_SNP [dm3] X_6755491_SNP [dm6]	A	G	4.024e^-4	0.763	UTR_3_PRIME CG14439 UPSTREAM CG14438
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	4.030e^-4	0.763	UTR_3_PRIME msi INTRON ymp
2L	7141675	2L_7141675_SNP [dm3] 2L_7141675_SNP [dm6]	G	A	4.034e^-4	0.763	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8509209	2L_8509209_SNP [dm3] 2L_8509209_SNP [dm6]	A	C	4.039e^-4	0.763	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2R	15174933	2R_15174933_SNP [dm3] 2R_19287428_SNP [dm6]	A	T	4.041e^-4	0.763	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11963048	2R_11963048_SNP [dm3] 2R_16075543_SNP [dm6]	A	C	4.042e^-4	0.763	INTERGENIC
2L	4002315	2L_4002315_SNP [dm3] 2L_4002315_SNP [dm6]	A	C	4.043e^-4	0.763	DOWNSTREAM CR45344 INTERGENIC
3R	16965362	3R_16965362_SNP [dm3] 3R_21139640_SNP [dm6]	C	G	4.045e^-4	0.763	INTRON meigo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8538322	2L_8538322_SNP [dm3] 2L_8538322_SNP [dm6]	A	T	4.056e^-4	0.763	DOWNSTREAM CG17834 INTRON CG17834
3R	25643851	3R_25643851_SNP [dm3] 3R_29818129_SNP [dm6]	C	G	4.058e^-4	0.763	UPSTREAM CG7829 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_Trl
3R	8987120	3R_8987120_SNP [dm3] 3R_13161398_SNP [dm6]	C	T	4.059e^-4	0.763	INTRON timeout
2R	11795376	2R_11795376_SNP [dm3] 2R_15907871_SNP [dm6]	G	C	4.060e^-4	0.763	INTRON sli
2L	1760120	2L_1760120_SNP [dm3] 2L_1760120_SNP [dm6]	C	T	4.062e^-4	0.763	INTERGENIC
3R	24350631	3R_24350631_DEL [dm3] 3R_28524909_DEL [dm6]	GAGG	G	4.064e^-4	0.763	CODON_DELETION Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3588034	2L_3588034_SNP [dm3] 2L_3588034_SNP [dm6]	G	A	4.074e^-4	0.763	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Cuticul_6_C24_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results