DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.664e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01368
In_3R_P	0.07176

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.3613	0.0034

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2067 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	1.016e^-6	0.74	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	2.901e^-6	0.74	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
X	10798033	X_10798033_SNP [dm3] X_10904000_SNP [dm6]	A	G	3.684e^-6	0.74	INTERGENIC
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	3.936e^-6	0.74	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	4.305e^-6	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15461665	2L_15461665_SNP [dm3] 2L_15461665_SNP [dm6]	A	G	4.713e^-6	0.74	INTERGENIC
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	4.765e^-6	0.74	INTERGENIC
X	10798115	X_10798115_SNP [dm3] X_10904082_SNP [dm6]	T	C	5.149e^-6	0.74	INTERGENIC
2R	14883286	2R_14883286_DEL [dm3] 2R_18995781_DEL [dm6]	ATAGGCTTGA	A	5.205e^-6	0.74	DOWNSTREAM snoRNA:abba-a INTRON tn
X	10798126	X_10798126_SNP [dm3] X_10904093_SNP [dm6]	G	A	5.915e^-6	0.74	INTERGENIC
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	6.429e^-6	0.74	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2R	12474615	2R_12474615_SNP [dm3] 2R_16587110_SNP [dm6]	T	A	6.701e^-6	0.74	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	6.907e^-6	0.74	INTRON 4EHP
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	7.099e^-6	0.74	INTERGENIC
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	7.142e^-6	0.74	INTRON fz2
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	7.912e^-6	0.74	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	9974029	2R_9974029_SNP [dm3] 2R_14086524_SNP [dm6]	G	T	8.156e^-6	0.74	INTRON Prosap
2R	18200328	2R_18200328_DEL [dm3] 2R_22312823_DEL [dm6]	TCGCACTCGCCTTGTTTGTT...	T	8.901e^-6	0.74	UPSTREAM CR44758 & 1 other INTERGENIC
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	9.391e^-6	0.74	INTERGENIC
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	1.088e^-5	0.74	INTRON Prosap
2L	2877581	2L_2877581_SNP [dm3] 2L_2877581_SNP [dm6]	A	G	1.102e^-5	0.74	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	1.181e^-5	0.74	INTERGENIC
3R	13607731	3R_13607731_SNP [dm3] 3R_17782009_SNP [dm6]	A	T	1.274e^-5	0.74	INTRON CG43102
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	1.274e^-5	0.74	INTRON fz2
2L	10019067	2L_10019067_SNP [dm3] 2L_10019067_SNP [dm6]	T	G	1.298e^-5	0.74	INTERGENIC
2R	12474609	2R_12474609_SNP [dm3] 2R_16587104_SNP [dm6]	T	C	1.299e^-5	0.74	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2R	3305395	2R_3305395_SNP [dm3] 2R_7417890_SNP [dm6]	C	T	1.394e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	1.420e^-5	0.74	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	1.420e^-5	0.74	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	1.420e^-5	0.74	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	1.420e^-5	0.74	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	1.420e^-5	0.74	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	1.420e^-5	0.74	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	1.420e^-5	0.74	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	1.420e^-5	0.74	SYNONYMOUS_CODING emb
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	1.439e^-5	0.74	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	1.488e^-5	0.74	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
2L	12982292	2L_12982292_SNP [dm3] 2L_12982292_SNP [dm6]	G	A	1.511e^-5	0.74	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18197000	2R_18197000_DEL [dm3] 2R_22309495_DEL [dm6]	CC	C	1.542e^-5	0.74	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9490721	X_9490721_DEL [dm3] X_9596688_DEL [dm6]	GTAGTAAG	G	1.577e^-5	0.74	INTERGENIC
2L	8371525	2L_8371525_INS [dm3] 2L_8371525_INS [dm6]	A	ATGGGCCTCAAAAA...	1.733e^-5	0.78	UPSTREAM CR45341 & 1 other INTRON CG17292
X	4438542	X_4438542_SNP [dm3] X_4544509_SNP [dm6]	A	T	1.835e^-5	0.78	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11190970	2L_11190970_SNP [dm3] 2L_11190970_SNP [dm6]	T	C	1.871e^-5	0.78	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	13842371	2L_13842371_SNP [dm3] 2L_13842371_SNP [dm6]	A	T	1.917e^-5	0.78	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	12313752	2L_12313752_SNP [dm3] 2L_12313752_SNP [dm6]	T	C	1.942e^-5	0.78	DOWNSTREAM aret INTERGENIC
X	4438547	X_4438547_SNP [dm3] X_4544514_SNP [dm6]	A	G	1.990e^-5	0.78	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1639637	2L_1639637_SNP [dm3] 2L_1639637_SNP [dm6]	A	G	2.020e^-5	0.78	INTERGENIC
2R	17768964	2R_17768964_SNP [dm3] 2R_21881459_SNP [dm6]	C	T	2.073e^-5	0.78	UTR_3_PRIME PpN58A INTRON Fili
X	4438551	X_4438551_SNP [dm3] X_4544518_SNP [dm6]	T	C	2.148e^-5	0.78	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14883324	2R_14883324_INS [dm3] 2R_18995819_INS [dm6]	T	TAAT	2.158e^-5	0.78	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	3307134	2R_3307134_SNP [dm3] 2R_7419629_SNP [dm6]	G	T	2.180e^-5	0.78	START_GAINED so UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14883273	2R_14883273_SNP [dm3] 2R_18995768_SNP [dm6]	G	A	2.188e^-5	0.78	DOWNSTREAM snoRNA:abba-a INTRON tn
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	2.205e^-5	0.78	INTRON CG14877
X	2237585	X_2237585_SNP [dm3] X_2343552_SNP [dm6]	T	C	2.304e^-5	0.78	UTR_3_PRIME phl DOWNSTREAM mRpL14	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	2.314e^-5	0.78	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	2.328e^-5	0.78	INTRON kar	TF binding site mE1_TFBS_cad
X	8408285	X_8408285_SNP [dm3] X_8514252_SNP [dm6]	G	T	2.376e^-5	0.782	INTRON CG33181
2L	11773290	2L_11773290_SNP [dm3] 2L_11773290_SNP [dm6]	G	A	2.440e^-5	0.789	INTERGENIC
2R	3305403	2R_3305403_SNP [dm3] 2R_7417898_SNP [dm6]	T	G	2.632e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3305407	2R_3305407_SNP [dm3] 2R_7417902_SNP [dm6]	T	A	2.713e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15985891	2L_15985891_SNP [dm3] 2L_15985891_SNP [dm6]	T	G	2.807e^-5	0.807	INTERGENIC
2L	1628224	2L_1628224_SNP [dm3] 2L_1628224_SNP [dm6]	C	T	2.877e^-5	0.807	INTERGENIC
2L	10884677	2L_10884677_SNP [dm3] 2L_10884677_SNP [dm6]	A	T	2.906e^-5	0.807	INTERGENIC
2L	15641089	2L_15641089_SNP [dm3] 2L_15641089_SNP [dm6]	A	C	3.013e^-5	0.807	INTERGENIC
2L	13087494	2L_13087494_SNP [dm3] 2L_13087494_SNP [dm6]	C	A	3.046e^-5	0.807	INTERGENIC
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	3.066e^-5	0.807	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14001442	2L_14001442_SNP [dm3] 2L_14001442_SNP [dm6]	C	T	3.077e^-5	0.807	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	3.131e^-5	0.807	UPSTREAM CG17292 INTRON CG17292
2R	12164879	2R_12164879_SNP [dm3] 2R_16277374_SNP [dm6]	T	C	3.212e^-5	0.807	UTR_3_PRIME CG33017 DOWNSTREAM cato & 1 other
2L	12982234	2L_12982234_SNP [dm3] 2L_12982234_SNP [dm6]	C	A	3.217e^-5	0.807	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15139082	2L_15139082_SNP [dm3] 2L_15139082_SNP [dm6]	C	A	3.236e^-5	0.807	INTERGENIC
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	3.244e^-5	0.807	INTRON CG42747
2L	14001438	2L_14001438_SNP [dm3] 2L_14001438_SNP [dm6]	C	A	3.280e^-5	0.807	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12636335	2R_12636335_SNP [dm3] 2R_16748830_SNP [dm6]	A	T	3.342e^-5	0.807	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	3.419e^-5	0.807	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	11177866	3L_11177866_SNP [dm3] 3L_11184766_SNP [dm6]	G	T	3.503e^-5	0.807	INTRON GlcAT-P
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	3.525e^-5	0.807	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	6449202	3L_6449202_SNP [dm3] 3L_6456102_SNP [dm6]	T	C	3.604e^-5	0.807	INTRON CG42747
X	14545703	X_14545703_INS [dm3] X_14651670_INS [dm6]	T	TT	3.608e^-5	0.807	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18983725	3R_18983725_SNP [dm3] 3R_23158003_SNP [dm6]	T	A	3.627e^-5	0.807	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	8032185	3L_8032185_SNP [dm3] 3L_8039085_SNP [dm6]	G	A	3.638e^-5	0.807	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8274201	2R_8274201_SNP [dm3] 2R_12386696_SNP [dm6]	G	T	3.800e^-5	0.807	UTR_5_PRIME Cpr49Ac UPSTREAM Cpr49Ac
2L	15139064	2L_15139064_DEL [dm3] 2L_15139064_DEL [dm6]	TTACGAAAA	C	3.922e^-5	0.807	INTERGENIC
2R	18199358	2R_18199358_SNP [dm3] 2R_22311853_SNP [dm6]	C	G	3.977e^-5	0.807	UTR_5_PRIME wdp UPSTREAM wdp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	3.986e^-5	0.807	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2L	15139061	2L_15139061_SNP [dm3] 2L_15139061_SNP [dm6]	T	A	4.001e^-5	0.807	INTERGENIC
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	4.043e^-5	0.807	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13842391	2L_13842391_SNP [dm3] 2L_13842391_SNP [dm6]	G	T	4.068e^-5	0.807	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	18887336	3L_18887336_SNP [dm3] 3L_18894236_SNP [dm6]	A	C	4.073e^-5	0.807	DOWNSTREAM NijB INTRON CG3902
2L	1965998	2L_1965998_SNP [dm3] 2L_1965998_SNP [dm6]	T	C	4.085e^-5	0.807	DOWNSTREAM tRNA:CR31942 INTRON erm	TF binding site mE1_TFBS_chinmo
2L	10035637	2L_10035637_SNP [dm3] 2L_10035637_SNP [dm6]	C	T	4.138e^-5	0.807	INTRON obst-B
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	4.165e^-5	0.807	INTRON GlcAT-P
2R	12389671	2R_12389671_SNP [dm3] 2R_16502166_SNP [dm6]	C	A	4.169e^-5	0.807	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	12982221	2L_12982221_SNP [dm3] 2L_12982221_SNP [dm6]	G	T	4.188e^-5	0.807	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7226594	2L_7226594_DEL [dm3] 2L_7226594_DEL [dm6]	GG	G	4.219e^-5	0.807	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	15139105	2L_15139105_MNP [dm3] 2L_15139105_MNP [dm6]	GTA	TCC	4.223e^-5	0.807	INTERGENIC
2L	22360950	2L_22360950_SNP [dm3] 2L_22360950_SNP [dm6]	T	G	4.252e^-5	0.807	INTRON CG17018	transposable element FlyBase
3L	18072017	3L_18072017_SNP [dm3] 3L_18078917_SNP [dm6]	T	G	4.282e^-5	0.807	DOWNSTREAM CR45392 INTERGENIC
2L	12982269	2L_12982269_SNP [dm3] 2L_12982269_SNP [dm6]	G	A	4.388e^-5	0.807	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12810421	2R_12810421_SNP [dm3] 2R_16922916_SNP [dm6]	T	A	4.390e^-5	0.807	INTERGENIC
3R	10277750	3R_10277750_DEL [dm3] 3R_14452028_DEL [dm6]	AA	A	4.401e^-5	0.807	INTRON cv-c
2L	8405703	2L_8405703_SNP [dm3] 2L_8405703_SNP [dm6]	G	C	4.434e^-5	0.807	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
X	4448661	X_4448661_DEL [dm3] X_4554628_DEL [dm6]	GC	G	4.463e^-5	0.807	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14645765	3L_14645765_SNP [dm3] 3L_14652665_SNP [dm6]	T	G	4.518e^-5	0.807	INTRON dlp
2R	12810415	2R_12810415_SNP [dm3] 2R_16922910_SNP [dm6]	T	C	4.608e^-5	0.807	INTERGENIC
2L	15139041	2L_15139041_DEL [dm3] 2L_15139041_DEL [dm6]	AAGTAGAATAAAGTGTC...	A	4.641e^-5	0.807	INTERGENIC
3R	22003939	3R_22003939_SNP [dm3] 3R_26178217_SNP [dm6]	G	T	4.753e^-5	0.807	INTRON CG31323
X	4437888	X_4437888_SNP [dm3] X_4543855_SNP [dm6]	C	T	4.764e^-5	0.807	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2L	12144426	2L_12144426_SNP [dm3] 2L_12144426_SNP [dm6]	G	A	4.820e^-5	0.807	UPSTREAM CG31760 INTRON CG31760
X	4438549	X_4438549_SNP [dm3] X_4544516_SNP [dm6]	C	A	4.848e^-5	0.807	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	4.865e^-5	0.807	INTRON fru
3L	14645751	3L_14645751_SNP [dm3] 3L_14652651_SNP [dm6]	T	A	4.935e^-5	0.807	INTRON dlp
2L	12144446	2L_12144446_SNP [dm3] 2L_12144446_SNP [dm6]	T	A	4.967e^-5	0.807	UPSTREAM CG31760 INTRON CG31760
2L	1096509	2L_1096509_SNP [dm3] 2L_1096509_SNP [dm6]	G	A	4.979e^-5	0.807	INTRON CG4629	TF binding site mE1_TFBS_cad
2L	14001569	2L_14001569_SNP [dm3] 2L_14001569_SNP [dm6]	C	T	5.001e^-5	0.807	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12982318	2L_12982318_SNP [dm3] 2L_12982318_SNP [dm6]	C	A	5.038e^-5	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12801381	2R_12801381_SNP [dm3] 2R_16913876_SNP [dm6]	T	C	5.076e^-5	0.807	INTERGENIC
2L	13842389	2L_13842389_SNP [dm3] 2L_13842389_SNP [dm6]	T	G	5.143e^-5	0.807	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	5.181e^-5	0.807	INTERGENIC
3L	1264568	3L_1264568_SNP [dm3] 3L_1264568_SNP [dm6]	A	G	5.196e^-5	0.807	INTRON CG9134
2L	7968784	2L_7968784_INS [dm3] 2L_7968784_INS [dm6]	G	GT	5.263e^-5	0.807	INTRON Snoo
X	4448658	X_4448658_SNP [dm3] X_4554625_SNP [dm6]	T	A	5.290e^-5	0.807	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3790169	X_3790169_SNP [dm3] X_3896136_SNP [dm6]	C	G	5.304e^-5	0.807	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	5.338e^-5	0.807	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
2L	8219340	2L_8219340_SNP [dm3] 2L_8219340_SNP [dm6]	G	T	5.475e^-5	0.82	INTRON Snx6
3L	19228952	3L_19228952_SNP [dm3] 3L_19235852_SNP [dm6]	T	A	5.509e^-5	0.82	UPSTREAM CG33647 & 1 other INTERGENIC
2R	10949174	2R_10949174_SNP [dm3] 2R_15061669_SNP [dm6]	G	A	5.576e^-5	0.823	INTERGENIC
2L	12982317	2L_12982317_SNP [dm3] 2L_12982317_SNP [dm6]	A	T	5.854e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20931108	3L_20931108_SNP [dm3] 3L_20938008_SNP [dm6]	T	A	5.865e^-5	0.824	INTRON fng
2L	7968826	2L_7968826_SNP [dm3] 2L_7968826_SNP [dm6]	C	G	5.936e^-5	0.824	INTRON Snoo
3R	15767315	3R_15767315_DEL [dm3] 3R_19941593_DEL [dm6]	AAG	A	6.006e^-5	0.824	INTRON Hs6st
2R	9956629	2R_9956629_SNP [dm3] 2R_14069124_SNP [dm6]	G	A	6.014e^-5	0.824	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12389667	2R_12389667_SNP [dm3] 2R_16502162_SNP [dm6]	G	T	6.075e^-5	0.824	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2R	18257588	2R_18257588_INS [dm3] 2R_22370083_INS [dm6]	C	CCTC	6.108e^-5	0.824	INTRON Liprin-gamma
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	6.113e^-5	0.824	DOWNSTREAM PpN58A INTRON Fili
2L	16389889	2L_16389889_SNP [dm3] 2L_16389889_SNP [dm6]	A	T	6.126e^-5	0.824	INTERGENIC
3R	12710778	3R_12710778_SNP [dm3] 3R_16885056_SNP [dm6]	C	A	6.149e^-5	0.824	INTRON iab-8
2L	11386564	2L_11386564_SNP [dm3] 2L_11386564_SNP [dm6]	A	T	6.190e^-5	0.824	INTERGENIC	regulatory region REDfly_CRMs
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	6.211e^-5	0.824	INTRON sr
3R	10138896	3R_10138896_SNP [dm3] 3R_14313174_SNP [dm6]	A	G	6.266e^-5	0.824	SYNONYMOUS_CODING CG31321
2L	13579958	2L_13579958_SNP [dm3] 2L_13579958_SNP [dm6]	A	T	6.322e^-5	0.824	INTRON kuz
2L	12982265	2L_12982265_SNP [dm3] 2L_12982265_SNP [dm6]	A	T	6.418e^-5	0.824	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	6.495e^-5	0.824	UPSTREAM CG17292 INTRON CG17292
3R	18983627	3R_18983627_SNP [dm3] 3R_23157905_SNP [dm6]	A	T	6.553e^-5	0.824	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	6.553e^-5	0.824	INTERGENIC
2L	15139099	2L_15139099_SNP [dm3] 2L_15139099_SNP [dm6]	A	C	6.559e^-5	0.824	INTERGENIC
2L	8346154	2L_8346154_SNP [dm3] 2L_8346154_SNP [dm6]	C	T	6.588e^-5	0.824	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17649895	2R_17649895_DEL [dm3] 2R_21762390_DEL [dm6]	TGTATGTAT	T	6.591e^-5	0.824	DOWNSTREAM CR43983 INTERGENIC
2L	11769295	2L_11769295_SNP [dm3] 2L_11769295_SNP [dm6]	G	C	6.663e^-5	0.824	INTERGENIC
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	6.772e^-5	0.824	SYNONYMOUS_CODING GluRIIE
2L	12982308	2L_12982308_SNP [dm3] 2L_12982308_SNP [dm6]	C	G	6.780e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9093722	X_9093722_SNP [dm3] X_9199689_SNP [dm6]	G	A	6.836e^-5	0.824	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10947811	2R_10947811_SNP [dm3] 2R_15060306_SNP [dm6]	T	C	6.876e^-5	0.824	INTERGENIC
2R	12389773	2R_12389773_SNP [dm3] 2R_16502268_SNP [dm6]	C	T	6.930e^-5	0.824	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3R	21246436	3R_21246436_SNP [dm3] 3R_25420714_SNP [dm6]	T	A	6.976e^-5	0.824	INTRON Fur1
2R	3306726	2R_3306726_SNP [dm3] 2R_7419221_SNP [dm6]	C	T	7.007e^-5	0.824	UPSTREAM so INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	23500234	3R_23500234_SNP [dm3] 3R_27674512_SNP [dm6]	C	T	7.022e^-5	0.824	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	14001563	2L_14001563_SNP [dm3] 2L_14001563_SNP [dm6]	G	C	7.050e^-5	0.824	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10292364	3L_10292364_SNP [dm3] 3L_10299264_SNP [dm6]	G	A	7.060e^-5	0.824	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	7.132e^-5	0.824	INTERGENIC
2R	10947479	2R_10947479_SNP [dm3] 2R_15059974_SNP [dm6]	T	C	7.332e^-5	0.824	INTERGENIC
2L	11769298	2L_11769298_SNP [dm3] 2L_11769298_SNP [dm6]	T	A	7.364e^-5	0.824	INTERGENIC
3R	13639450	3R_13639450_SNP [dm3] 3R_17813728_SNP [dm6]	A	G	7.364e^-5	0.824	INTRON tinc	TF binding site mE1_TFBS_HSA
2L	12333274	2L_12333274_SNP [dm3] 2L_12333274_SNP [dm6]	C	T	7.383e^-5	0.824	INTERGENIC
3R	8850389	3R_8850389_SNP [dm3] 3R_13024667_SNP [dm6]	A	T	7.400e^-5	0.824	DOWNSTREAM CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12982291	2L_12982291_SNP [dm3] 2L_12982291_SNP [dm6]	C	G	7.417e^-5	0.824	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12144435	2L_12144435_SNP [dm3] 2L_12144435_SNP [dm6]	T	C	7.428e^-5	0.824	UPSTREAM CG31760 INTRON CG31760
2L	11769282	2L_11769282_SNP [dm3] 2L_11769282_SNP [dm6]	A	T	7.468e^-5	0.824	INTERGENIC
X	4448664	X_4448664_SNP [dm3] X_4554631_SNP [dm6]	C	T	7.495e^-5	0.824	UPSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12809928	2R_12809928_SNP [dm3] 2R_16922423_SNP [dm6]	C	A	7.568e^-5	0.824	INTERGENIC
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	7.633e^-5	0.824	SYNONYMOUS_CODING GluRIIE
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	7.691e^-5	0.824	INTRON 4EHP
3L	14645666	3L_14645666_SNP [dm3] 3L_14652566_SNP [dm6]	C	A	7.740e^-5	0.824	INTRON dlp
2R	12800958	2R_12800958_SNP [dm3] 2R_16913453_SNP [dm6]	C	T	7.797e^-5	0.824	INTERGENIC
3L	17690539	3L_17690539_SNP [dm3] 3L_17697439_SNP [dm6]	T	C	7.838e^-5	0.824	INTRON Ccn
3R	6286541	3R_6286541_SNP [dm3] 3R_10460819_SNP [dm6]	C	T	7.879e^-5	0.824	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10884629	2L_10884629_SNP [dm3] 2L_10884629_SNP [dm6]	G	A	7.887e^-5	0.824	INTERGENIC
2R	12810422	2R_12810422_SNP [dm3] 2R_16922917_SNP [dm6]	A	G	7.889e^-5	0.824	INTERGENIC
2L	11148079	2L_11148079_SNP [dm3] 2L_11148079_SNP [dm6]	C	A	7.930e^-5	0.824	INTRON Gyc32E
2L	15139116	2L_15139116_SNP [dm3] 2L_15139116_SNP [dm6]	C	A	7.943e^-5	0.824	INTERGENIC
2L	13842433	2L_13842433_SNP [dm3] 2L_13842433_SNP [dm6]	A	C	8.019e^-5	0.824	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	8343766	3R_8343766_SNP [dm3] 3R_12518044_SNP [dm6]	G	A	8.058e^-5	0.824	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	17660946	3R_17660946_SNP [dm3] 3R_21835224_SNP [dm6]	T	G	8.064e^-5	0.824	INTERGENIC
2L	14001547	2L_14001547_SNP [dm3] 2L_14001547_SNP [dm6]	G	A	8.079e^-5	0.824	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	8.168e^-5	0.827	INTERGENIC
3R	8370522	3R_8370522_SNP [dm3] 3R_12544800_SNP [dm6]	C	T	8.202e^-5	0.827	INTRON Octbeta3R
2L	6913964	2L_6913964_SNP [dm3] 2L_6913964_SNP [dm6]	C	A	8.390e^-5	0.84	UTR_5_PRIME Wee1 DOWNSTREAM x16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	6637274	3L_6637274_SNP [dm3] 3L_6644174_SNP [dm6]	C	T	8.423e^-5	0.84	INTERGENIC
2R	19109678	2R_19109678_SNP [dm3] 2R_23222155_SNP [dm6]	G	A	8.575e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8405883	2L_8405883_SNP [dm3] 2L_8405883_SNP [dm6]	C	T	8.712e^-5	0.853	INTRON emb	TF binding site mE1_TFBS_sens
2R	17065435	2R_17065435_SNP [dm3] 2R_21177930_SNP [dm6]	G	A	8.808e^-5	0.853	SYNONYMOUS_CODING CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	8.822e^-5	0.853	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	3856033	2L_3856033_SNP [dm3] 2L_3856033_SNP [dm6]	C	A	8.825e^-5	0.853	DOWNSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16042712	2L_16042712_DEL [dm3] 2L_16042712_DEL [dm6]	CA	C	8.854e^-5	0.853	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	8.863e^-5	0.853	INTRON capu	TF binding site mE1_TFBS_bab1
X	9093474	X_9093474_SNP [dm3] X_9199441_SNP [dm6]	A	G	9.034e^-5	0.857	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13604289	3R_13604289_SNP [dm3] 3R_17778567_SNP [dm6]	C	T	9.148e^-5	0.857	INTRON CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18983686	3R_18983686_INS [dm3] 3R_23157964_INS [dm6]	A	AACTGGG	9.159e^-5	0.857	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	9.211e^-5	0.857	INTRON CadN
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	9.254e^-5	0.857	UTR_5_PRIME Blimp-1 INTRON Blimp-1
2R	6923904	2R_6923904_SNP [dm3] 2R_11036399_SNP [dm6]	A	G	9.286e^-5	0.857	INTRON luna
2L	1097426	2L_1097426_SNP [dm3] 2L_1097426_SNP [dm6]	A	G	9.356e^-5	0.857	INTRON CG4629
2L	13842321	2L_13842321_DEL [dm3] 2L_13842321_DEL [dm6]	AAATAGCTCA	A	9.510e^-5	0.857	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	9621585	2L_9621585_SNP [dm3] 2L_9621585_SNP [dm6]	G	A	9.941e^-5	0.857	SYNONYMOUS_CODING GlcAT-S
2R	17812003	2R_17812003_SNP [dm3] 2R_21924498_SNP [dm6]	T	A	9.948e^-5	0.857	INTRON Fili
3L	7465285	3L_7465285_SNP [dm3] 3L_7472185_SNP [dm6]	G	T	9.954e^-5	0.857	SYNONYMOUS_CODING CG8541	TF binding site mE1_TFBS_cad
2L	13414857	2L_13414857_SNP [dm3] 2L_13414857_SNP [dm6]	T	A	9.982e^-5	0.857	UPSTREAM CG42784 & 2 others INTERGENIC
2L	4870891	2L_4870891_SNP [dm3] 2L_4870891_SNP [dm6]	C	A	1.009e^-4	0.857	INTRON pog	TF binding site mE1_TFBS_HSA
3R	10118718	3R_10118718_SNP [dm3] 3R_14292996_SNP [dm6]	C	T	1.011e^-4	0.857	INTRON CG12207
2L	15139145	2L_15139145_SNP [dm3] 2L_15139145_SNP [dm6]	A	G	1.013e^-4	0.857	INTERGENIC
2R	10842351	2R_10842351_SNP [dm3] 2R_14954846_SNP [dm6]	G	A	1.019e^-4	0.857	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7968782	2L_7968782_SNP [dm3] 2L_7968782_SNP [dm6]	T	G	1.027e^-4	0.857	INTRON Snoo
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	1.027e^-4	0.857	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	11769263	2L_11769263_SNP [dm3] 2L_11769263_SNP [dm6]	G	T	1.029e^-4	0.857	INTERGENIC
2R	3292042	2R_3292042_SNP [dm3] 2R_7404537_SNP [dm6]	G	C	1.031e^-4	0.857	DOWNSTREAM CG43123 & 1 other INTRON Eaf
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	1.033e^-4	0.857	DOWNSTREAM Cpn INTERGENIC
X	5404350	X_5404350_SNP [dm3] X_5510317_SNP [dm6]	C	T	1.036e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14223319	2L_14223319_SNP [dm3] 2L_14223319_SNP [dm6]	A	G	1.036e^-4	0.857	INTRON Dyrk2
2R	12474580	2R_12474580_SNP [dm3] 2R_16587075_SNP [dm6]	T	G	1.039e^-4	0.857	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	7988098	3R_7988098_SNP [dm3] 3R_12162376_SNP [dm6]	G	T	1.040e^-4	0.857	DOWNSTREAM Cpn INTERGENIC
2L	16389803	2L_16389803_SNP [dm3] 2L_16389803_SNP [dm6]	G	A	1.042e^-4	0.857	INTERGENIC
X	20326094	X_20326094_DEL [dm3] X_20455067_DEL [dm6]	TCTCT	T	1.056e^-4	0.857	INTRON CG32506
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	1.059e^-4	0.857	INTRON CG42663
2L	14223312	2L_14223312_SNP [dm3] 2L_14223312_SNP [dm6]	C	T	1.059e^-4	0.857	INTRON Dyrk2
X	16640660	X_16640660_DEL [dm3] X_16746627_DEL [dm6]	AA	A	1.061e^-4	0.857	UPSTREAM CG9634 INTRON CG9634
2L	4420418	2L_4420418_SNP [dm3] 2L_4420418_SNP [dm6]	T	G	1.070e^-4	0.857	INTRON CG15431
3L	7642886	3L_7642886_SNP [dm3] 3L_7649786_SNP [dm6]	C	T	1.074e^-4	0.857	UPSTREAM CG32373 INTERGENIC
2L	1096502	2L_1096502_SNP [dm3] 2L_1096502_SNP [dm6]	T	C	1.080e^-4	0.857	INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9671012	2L_9671012_SNP [dm3] 2L_9671012_SNP [dm6]	G	A	1.086e^-4	0.857	EXON CR44150
2L	2287185	2L_2287185_SNP [dm3] 2L_2287185_SNP [dm6]	A	G	1.087e^-4	0.857	UTR_3_PRIME CG42658 UPSTREAM CG31681
2R	6544185	2R_6544185_SNP [dm3] 2R_10656680_SNP [dm6]	A	T	1.087e^-4	0.857	DOWNSTREAM CR44452 INTERGENIC
2L	1628272	2L_1628272_SNP [dm3] 2L_1628272_SNP [dm6]	A	T	1.090e^-4	0.857	INTERGENIC
2L	15139175	2L_15139175_SNP [dm3] 2L_15139175_SNP [dm6]	A	G	1.094e^-4	0.857	INTERGENIC
3R	23977191	3R_23977191_SNP [dm3] 3R_28151469_SNP [dm6]	T	C	1.100e^-4	0.857	INTRON CG34354
3L	14647243	3L_14647243_INS [dm3] 3L_14654143_INS [dm6]	A	AATATGATA	1.106e^-4	0.857	INTRON dlp
2R	8425406	2R_8425406_SNP [dm3] 2R_12537901_SNP [dm6]	C	T	1.113e^-4	0.857	INTRON fra
X	8080561	X_8080561_SNP [dm3] X_8186528_SNP [dm6]	A	T	1.123e^-4	0.857	INTRON sdt
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	1.132e^-4	0.857	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
2L	12982222	2L_12982222_SNP [dm3] 2L_12982222_SNP [dm6]	G	T	1.137e^-4	0.857	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18156333	3R_18156333_SNP [dm3] 3R_22330611_SNP [dm6]	C	G	1.144e^-4	0.857	UPSTREAM CG33721 DOWNSTREAM CG7080 INTERGENIC	TF binding site mE1_TFBS_cad
2R	3264542	2R_3264542_SNP [dm3] 2R_7377037_SNP [dm6]	A	G	1.145e^-4	0.857	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1870196	3L_1870196_SNP [dm3] 3L_1870196_SNP [dm6]	C	T	1.166e^-4	0.857	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3292043	2R_3292043_SNP [dm3] 2R_7404538_SNP [dm6]	G	A	1.169e^-4	0.857	DOWNSTREAM CG43123 & 1 other INTRON Eaf
X	14545710	X_14545710_SNP [dm3] X_14651677_SNP [dm6]	C	A	1.179e^-4	0.857	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12556619	3L_12556619_SNP [dm3] 3L_12563519_SNP [dm6]	T	G	1.184e^-4	0.857	INTRON sowah
2R	17065643	2R_17065643_SNP [dm3] 2R_21178138_SNP [dm6]	T	G	1.191e^-4	0.857	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad
3R	8149057	3R_8149057_SNP [dm3] 3R_12323335_SNP [dm6]	A	T	1.191e^-4	0.857	UPSTREAM CG10013 & 1 other INTERGENIC
3L	10893212	3L_10893212_SNP [dm3] 3L_10900112_SNP [dm6]	G	A	1.193e^-4	0.857	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
X	5404373	X_5404373_SNP [dm3] X_5510340_SNP [dm6]	A	T	1.194e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17685078	2L_17685078_DEL [dm3] 2L_17685078_DEL [dm6]	TAGTTTAAATTTATTT...	T	1.196e^-4	0.857	INTRON CadN
2L	13822626	2L_13822626_SNP [dm3] 2L_13822626_SNP [dm6]	A	G	1.199e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad
2L	13822642	2L_13822642_INS [dm3] 2L_13822642_INS [dm6]	A	AG	1.199e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad
2L	13680862	2L_13680862_SNP [dm3] 2L_13680862_SNP [dm6]	C	T	1.208e^-4	0.857	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	13822658	2L_13822658_SNP [dm3] 2L_13822658_SNP [dm6]	G	A	1.208e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	1.209e^-4	0.857	UPSTREAM CG17292 INTRON CG17292
X	16289601	X_16289601_SNP [dm3] X_16395568_SNP [dm6]	T	C	1.215e^-4	0.857	SYNONYMOUS_CODING mei-41
2L	12333073	2L_12333073_SNP [dm3] 2L_12333073_SNP [dm6]	G	C	1.225e^-4	0.857	INTERGENIC
2L	12314702	2L_12314702_SNP [dm3] 2L_12314702_SNP [dm6]	A	C	1.230e^-4	0.857	INTERGENIC
X	11217838	X_11217838_SNP [dm3] X_11323805_SNP [dm6]	G	A	1.235e^-4	0.857	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	10298570	3L_10298570_SNP [dm3] 3L_10305470_SNP [dm6]	A	G	1.235e^-4	0.857	INTERGENIC
X	3010519	X_3010519_INS [dm3] X_3116486_INS [dm6]	G	GTG	1.237e^-4	0.857	INTRON kirre
3R	9398297	3R_9398297_SNP [dm3] 3R_13572575_SNP [dm6]	C	G	1.240e^-4	0.857	INTERGENIC
2L	15371761	2L_15371761_SNP [dm3] 2L_15371761_SNP [dm6]	C	T	1.242e^-4	0.857	INTERGENIC
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	1.242e^-4	0.857	INTRON CG14692
2L	13822668	2L_13822668_SNP [dm3] 2L_13822668_SNP [dm6]	T	C	1.247e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8292611	X_8292611_SNP [dm3] X_8398578_SNP [dm6]	C	G	1.248e^-4	0.857	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13081755	3R_13081755_SNP [dm3] 3R_17256033_SNP [dm6]	G	T	1.253e^-4	0.857	INTRON beat-IIb
2L	12801677	2L_12801677_SNP [dm3] 2L_12801677_SNP [dm6]	C	G	1.261e^-4	0.857	INTERGENIC
3L	1697517	3L_1697517_SNP [dm3] 3L_1697517_SNP [dm6]	T	A	1.265e^-4	0.857	INTRON CG7991
2L	8223061	2L_8223061_SNP [dm3] 2L_8223061_SNP [dm6]	G	A	1.266e^-4	0.857	SYNONYMOUS_CODING Pvr
2R	10949488	2R_10949488_SNP [dm3] 2R_15061983_SNP [dm6]	A	C	1.269e^-4	0.857	INTERGENIC
2L	13822639	2L_13822639_SNP [dm3] 2L_13822639_SNP [dm6]	C	A	1.276e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad
2L	11768402	2L_11768402_INS [dm3] 2L_11768402_INS [dm6]	A	ACTCTTGTA	1.279e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1106134	2L_1106134_SNP [dm3] 2L_1106134_SNP [dm6]	G	A	1.286e^-4	0.857	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14845685	3R_14845685_SNP [dm3] 3R_19019963_SNP [dm6]	C	T	1.291e^-4	0.857	DOWNSTREAM gukh INTRON gukh
3L	14645800	3L_14645800_SNP [dm3] 3L_14652700_SNP [dm6]	C	T	1.294e^-4	0.857	INTRON dlp
2R	15129134	2R_15129134_SNP [dm3] 2R_19241629_SNP [dm6]	T	C	1.304e^-4	0.857	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	1.305e^-4	0.857	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	1.307e^-4	0.857	INTERGENIC
2R	12138487	2R_12138487_SNP [dm3] 2R_16250982_SNP [dm6]	C	T	1.308e^-4	0.857	INTRON CngA
2R	12138504	2R_12138504_SNP [dm3] 2R_16250999_SNP [dm6]	T	G	1.310e^-4	0.857	INTRON CngA
2R	12138525	2R_12138525_SNP [dm3] 2R_16251020_SNP [dm6]	T	G	1.310e^-4	0.857	INTRON CngA
2R	3264527	2R_3264527_SNP [dm3] 2R_7377022_SNP [dm6]	C	T	1.310e^-4	0.857	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8219689	2L_8219689_SNP [dm3] 2L_8219689_SNP [dm6]	G	A	1.318e^-4	0.857	SYNONYMOUS_CODING Snx6
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	1.334e^-4	0.857	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	1.336e^-4	0.857	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	1.344e^-4	0.857	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11768616	2L_11768616_SNP [dm3] 2L_11768616_SNP [dm6]	T	C	1.344e^-4	0.857	INTERGENIC
2L	11769146	2L_11769146_SNP [dm3] 2L_11769146_SNP [dm6]	A	G	1.344e^-4	0.857	INTERGENIC
3R	26454700	3R_26454700_SNP [dm3] 3R_30628978_SNP [dm6]	T	C	1.344e^-4	0.857	UTR_5_PRIME CG2267
3R	8503901	3R_8503901_SNP [dm3] 3R_12678179_SNP [dm6]	C	T	1.353e^-4	0.857	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8407775	X_8407775_SNP [dm3] X_8513742_SNP [dm6]	C	T	1.354e^-4	0.857	INTRON CG33181
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	1.356e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad
3R	25476675	3R_25476675_SNP [dm3] 3R_29650953_SNP [dm6]	A	G	1.356e^-4	0.857	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	16241847	2L_16241847_SNP [dm3] 2L_16241847_SNP [dm6]	A	G	1.360e^-4	0.857	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
3L	1278453	3L_1278453_SNP [dm3] 3L_1278453_SNP [dm6]	T	C	1.368e^-4	0.857	INTRON CG32333
2R	12894548	2R_12894548_SNP [dm3] 2R_17007043_SNP [dm6]	T	C	1.374e^-4	0.857	SYNONYMOUS_CODING CG6805 DOWNSTREAM Ehbp1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1412244	2L_1412244_SNP [dm3] 2L_1412244_SNP [dm6]	T	C	1.375e^-4	0.857	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	1.377e^-4	0.857	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
2R	18146344	2R_18146344_SNP [dm3] 2R_22258839_SNP [dm6]	C	A	1.378e^-4	0.857	INTRON dve
3R	8793021	3R_8793021_SNP [dm3] 3R_12967299_SNP [dm6]	C	T	1.381e^-4	0.857	NON_SYNONYMOUS_CODING grsm UTR_5_PRIME CG14384 UPSTREAM CG14384 DOWNSTREAM CG7381
2R	12138512	2R_12138512_DEL [dm3] 2R_16251007_DEL [dm6]	TT	T	1.386e^-4	0.857	INTRON CngA
2L	12573938	2L_12573938_SNP [dm3] 2L_12573938_SNP [dm6]	A	G	1.391e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16774240	2R_16774240_SNP [dm3] 2R_20886735_SNP [dm6]	G	A	1.395e^-4	0.857	SPLICE_SITE_REGION otp INTRON otp
2L	13822634	2L_13822634_SNP [dm3] 2L_13822634_SNP [dm6]	T	G	1.404e^-4	0.857	INTRON b	TF binding site mE1_TFBS_cad
2L	11176662	2L_11176662_SNP [dm3] 2L_11176662_SNP [dm6]	C	T	1.406e^-4	0.857	INTRON Ca-beta
X	3780642	X_3780642_SNP [dm3] X_3886609_SNP [dm6]	G	T	1.410e^-4	0.857	INTRON CG15239
X	6319125	X_6319125_SNP [dm3] X_6425092_SNP [dm6]	T	C	1.414e^-4	0.857	INTRON CG42340
X	15981988	X_15981988_SNP [dm3] X_16087955_SNP [dm6]	A	T	1.418e^-4	0.857	UPSTREAM Tob INTRON Tob	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	1.421e^-4	0.857	INTERGENIC
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	1.421e^-4	0.857	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11769469	2L_11769469_SNP [dm3] 2L_11769469_SNP [dm6]	T	A	1.428e^-4	0.857	INTERGENIC
3L	12990071	3L_12990071_SNP [dm3] 3L_12996971_SNP [dm6]	T	C	1.430e^-4	0.857	SYNONYMOUS_CODING CG11262
2R	16431954	2R_16431954_SNP [dm3] 2R_20544449_SNP [dm6]	C	G	1.442e^-4	0.861	INTERGENIC
2L	13842418	2L_13842418_SNP [dm3] 2L_13842418_SNP [dm6]	A	G	1.464e^-4	0.868	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	11769349	2L_11769349_SNP [dm3] 2L_11769349_SNP [dm6]	A	G	1.468e^-4	0.868	INTERGENIC
2L	11769408	2L_11769408_SNP [dm3] 2L_11769408_SNP [dm6]	A	G	1.468e^-4	0.868	INTERGENIC
2L	11141533	2L_11141533_SNP [dm3] 2L_11141533_SNP [dm6]	G	T	1.478e^-4	0.868	SYNONYMOUS_CODING Gyc32E
2L	13819846	2L_13819846_SNP [dm3] 2L_13819846_SNP [dm6]	A	G	1.495e^-4	0.868	DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	1.499e^-4	0.868	INTRON CG10089
X	6311167	X_6311167_SNP [dm3] X_6417134_SNP [dm6]	T	C	1.501e^-4	0.868	INTERGENIC
2L	12982232	2L_12982232_SNP [dm3] 2L_12982232_SNP [dm6]	G	A	1.505e^-4	0.868	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2176706	X_2176706_DEL [dm3] X_2282673_DEL [dm6]	CTATCGACGCCACAGAGACC...	C	1.506e^-4	0.868	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1686676	2L_1686676_SNP [dm3] 2L_1686676_SNP [dm6]	A	T	1.507e^-4	0.868	INTRON chinmo
X	6311179	X_6311179_SNP [dm3] X_6417146_SNP [dm6]	T	C	1.508e^-4	0.868	INTERGENIC
2L	15139025	2L_15139025_DEL [dm3] 2L_15139025_DEL [dm6]	CTCATAATGATG...	C	1.508e^-4	0.868	INTERGENIC
X	2548398	X_2548398_SNP [dm3] X_2654365_SNP [dm6]	A	G	1.514e^-4	0.868	INTRON sgg
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	1.521e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	13414855	2L_13414855_SNP [dm3] 2L_13414855_SNP [dm6]	A	G	1.527e^-4	0.868	UPSTREAM CG42784 & 2 others INTERGENIC
2L	14001479	2L_14001479_SNP [dm3] 2L_14001479_SNP [dm6]	A	T	1.528e^-4	0.868	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12315054	2L_12315054_SNP [dm3] 2L_12315054_SNP [dm6]	C	T	1.539e^-4	0.868	DOWNSTREAM CR45282 INTERGENIC
2R	9187387	2R_9187387_SNP [dm3] 2R_13299882_SNP [dm6]	A	T	1.541e^-4	0.868	SYNONYMOUS_CODING CG17047
3L	7733118	3L_7733118_SNP [dm3] 3L_7740018_SNP [dm6]	A	C	1.541e^-4	0.868	INTRON CG32373 & 1 other
2R	16242316	2R_16242316_SNP [dm3] 2R_20354811_SNP [dm6]	C	A	1.550e^-4	0.87	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13119498	2R_13119498_SNP [dm3] 2R_17231993_SNP [dm6]	C	T	1.579e^-4	0.883	INTRON mbl
2L	14001545	2L_14001545_SNP [dm3] 2L_14001545_SNP [dm6]	G	A	1.594e^-4	0.883	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12312253	2L_12312253_SNP [dm3] 2L_12312253_SNP [dm6]	A	T	1.611e^-4	0.883	UTR_3_PRIME aret INTRON aret
2L	12982173	2L_12982173_SNP [dm3] 2L_12982173_SNP [dm6]	G	T	1.612e^-4	0.883	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23977187	3R_23977187_SNP [dm3] 3R_28151465_SNP [dm6]	T	C	1.613e^-4	0.883	INTRON CG34354
2R	10937107	2R_10937107_SNP [dm3] 2R_15049602_SNP [dm6]	T	C	1.615e^-4	0.883	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18607351	X_18607351_INS [dm3] X_18713318_INS [dm6]	A	AA	1.628e^-4	0.883	INTRON CCKLR-17D1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14973580	2R_14973580_SNP [dm3] 2R_19086075_SNP [dm6]	C	T	1.632e^-4	0.883	INTRON 5-HT1A
2L	4930171	2L_4930171_SNP [dm3] 2L_4930171_SNP [dm6]	A	G	1.644e^-4	0.883	INTRON hoe1
3L	1615173	3L_1615173_SNP [dm3] 3L_1615173_SNP [dm6]	T	C	1.646e^-4	0.883	NON_SYNONYMOUS_CODING CG12105 UPSTREAM CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
2L	16224853	2L_16224853_SNP [dm3] 2L_16224853_SNP [dm6]	T	A	1.646e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12298375	2L_12298375_SNP [dm3] 2L_12298375_SNP [dm6]	G	C	1.655e^-4	0.883	INTRON aret	TF binding site mE1_TFBS_inv
2L	12298378	2L_12298378_SNP [dm3] 2L_12298378_SNP [dm6]	T	G	1.655e^-4	0.883	INTRON aret	TF binding site mE1_TFBS_inv
2L	12801678	2L_12801678_SNP [dm3] 2L_12801678_SNP [dm6]	G	T	1.658e^-4	0.883	INTERGENIC
X	10797971	X_10797971_SNP [dm3] X_10903938_SNP [dm6]	A	G	1.661e^-4	0.883	INTERGENIC
3L	11526671	3L_11526671_SNP [dm3] 3L_11533571_SNP [dm6]	T	C	1.665e^-4	0.883	INTRON Mob2
3L	3960299	3L_3960299_SNP [dm3] 3L_3960299_SNP [dm6]	A	T	1.666e^-4	0.883	UPSTREAM CG12605 INTRON CG12605
3R	11719649	3R_11719649_SNP [dm3] 3R_15893927_SNP [dm6]	A	G	1.667e^-4	0.883	INTRON CG14877
2R	7226620	2R_7226620_SNP [dm3] 2R_11339115_SNP [dm6]	A	C	1.668e^-4	0.883	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	1.671e^-4	0.883	INTRON CG13670	TF binding site mE1_TFBS_cad
2R	7069144	2R_7069144_SNP [dm3] 2R_11181639_SNP [dm6]	T	A	1.676e^-4	0.883	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18117553	3L_18117553_SNP [dm3] 3L_18124453_SNP [dm6]	A	G	1.677e^-4	0.883	INTERGENIC
3L	5673312	3L_5673312_SNP [dm3] 3L_5680212_SNP [dm6]	G	A	1.682e^-4	0.883	INTRON sif
2R	19556485	2R_19556485_SNP [dm3] 2R_23668962_SNP [dm6]	G	A	1.693e^-4	0.883	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8371400	2L_8371400_SNP [dm3] 2L_8371400_SNP [dm6]	C	T	1.694e^-4	0.883	UPSTREAM CR45341 INTRON CG17292
2L	7085754	2L_7085754_SNP [dm3] 2L_7085754_SNP [dm6]	A	T	1.703e^-4	0.883	INTERGENIC
3R	9727800	3R_9727800_SNP [dm3] 3R_13902078_SNP [dm6]	C	A	1.704e^-4	0.883	UTR_5_PRIME ems	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18983651	3R_18983651_SNP [dm3] 3R_23157929_SNP [dm6]	G	T	1.705e^-4	0.883	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	1.710e^-4	0.883	INTRON CG5455
2R	19542033	2R_19542033_SNP [dm3] 2R_23654510_SNP [dm6]	C	G	1.713e^-4	0.883	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl
3L	4169369	3L_4169369_SNP [dm3] 3L_4169369_SNP [dm6]	G	A	1.731e^-4	0.884	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12801487	2R_12801487_SNP [dm3] 2R_16913982_SNP [dm6]	A	G	1.732e^-4	0.884	INTERGENIC
X	16826426	X_16826426_DEL [dm3] X_16932393_DEL [dm6]	AA	A	1.733e^-4	0.884	INTRON CG4928
2L	7256499	2L_7256499_SNP [dm3] 2L_7256499_SNP [dm6]	T	G	1.750e^-4	0.884	SYNONYMOUS_CODING Wnt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6311590	X_6311590_SNP [dm3] X_6417557_SNP [dm6]	C	T	1.751e^-4	0.884	INTERGENIC
2R	14883662	2R_14883662_SNP [dm3] 2R_18996157_SNP [dm6]	G	T	1.752e^-4	0.884	INTRON tn
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	1.753e^-4	0.884	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
3R	14144811	3R_14144811_SNP [dm3] 3R_18319089_SNP [dm6]	A	C	1.757e^-4	0.884	INTRON CG31235
2L	1359731	2L_1359731_SNP [dm3] 2L_1359731_SNP [dm6]	A	T	1.759e^-4	0.884	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
2L	2919910	2L_2919910_SNP [dm3] 2L_2919910_SNP [dm6]	C	T	1.768e^-4	0.884	INTRON lilli
2L	14001536	2L_14001536_SNP [dm3] 2L_14001536_SNP [dm6]	G	C	1.784e^-4	0.884	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	16640457	X_16640457_SNP [dm3] X_16746424_SNP [dm6]	T	C	1.789e^-4	0.884	UPSTREAM CG9634 INTRON CG9634
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	1.789e^-4	0.884	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8108330	3R_8108330_SNP [dm3] 3R_12282608_SNP [dm6]	C	T	1.790e^-4	0.884	INTRON svp
2R	10947836	2R_10947836_SNP [dm3] 2R_15060331_SNP [dm6]	T	A	1.791e^-4	0.884	INTERGENIC
2L	12333152	2L_12333152_SNP [dm3] 2L_12333152_SNP [dm6]	A	G	1.791e^-4	0.884	INTERGENIC
3L	9005730	3L_9005730_SNP [dm3] 3L_9012630_SNP [dm6]	G	A	1.799e^-4	0.886	DOWNSTREAM Doc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16640270	X_16640270_SNP [dm3] X_16746237_SNP [dm6]	A	T	1.811e^-4	0.889	UPSTREAM CG9634 INTRON CG9634
2L	13822662	2L_13822662_SNP [dm3] 2L_13822662_SNP [dm6]	T	C	1.836e^-4	0.891	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27054989	3R_27054989_SNP [dm3] 3R_31229267_SNP [dm6]	A	G	1.840e^-4	0.891	UTR_3_PRIME CG12054 DOWNSTREAM CG12054	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	11390787	2L_11390787_SNP [dm3] 2L_11390787_SNP [dm6]	T	C	1.841e^-4	0.891	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2L	5437269	2L_5437269_SNP [dm3] 2L_5437269_SNP [dm6]	C	T	1.842e^-4	0.891	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
2L	15814513	2L_15814513_SNP [dm3] 2L_15814513_SNP [dm6]	A	T	1.843e^-4	0.891	INTERGENIC
3L	9499551	3L_9499551_DEL [dm3] 3L_9506451_DEL [dm6]	AATA	A	1.844e^-4	0.891	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	1.859e^-4	0.895	INTRON Octbeta3R
2L	8219473	2L_8219473_SNP [dm3] 2L_8219473_SNP [dm6]	T	G	1.865e^-4	0.895	SYNONYMOUS_CODING Snx6
3L	21595047	3L_21595047_SNP [dm3] 3L_21601947_SNP [dm6]	C	G	1.878e^-4	0.895	INTRON TfAP-2	TF binding site mE1_TFBS_cad
3R	9963622	3R_9963622_SNP [dm3] 3R_14137900_SNP [dm6]	A	G	1.884e^-4	0.895	INTERGENIC
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	1.884e^-4	0.895	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3L	12556622	3L_12556622_SNP [dm3] 3L_12563522_SNP [dm6]	C	T	1.887e^-4	0.895	INTRON sowah
2L	1698340	2L_1698340_SNP [dm3] 2L_1698340_SNP [dm6]	T	A	1.896e^-4	0.895	UTR_3_PRIME chinmo DOWNSTREAM chinmo
X	10886474	X_10886474_SNP [dm3] X_10992441_SNP [dm6]	C	A	1.898e^-4	0.895	INTRON CG42339
3L	1277382	3L_1277382_SNP [dm3] 3L_1277382_SNP [dm6]	A	G	1.903e^-4	0.895	INTRON CG32333
3R	8528690	3R_8528690_SNP [dm3] 3R_12702968_SNP [dm6]	G	A	1.916e^-4	0.895	INTRON Past1	TF binding site mE1_TFBS_chinmo
3L	18878750	3L_18878750_SNP [dm3] 3L_18885650_SNP [dm6]	C	T	1.919e^-4	0.895	UPSTREAM CG3961 INTRON CG3961
2R	17065662	2R_17065662_SNP [dm3] 2R_21178157_SNP [dm6]	C	A	1.919e^-4	0.895	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18117549	3L_18117549_SNP [dm3] 3L_18124449_SNP [dm6]	C	G	1.921e^-4	0.895	INTERGENIC
2R	10948882	2R_10948882_SNP [dm3] 2R_15061377_SNP [dm6]	G	A	1.923e^-4	0.895	INTERGENIC
2L	1338827	2L_1338827_SNP [dm3] 2L_1338827_SNP [dm6]	A	T	1.929e^-4	0.895	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22992511	3R_22992511_INS [dm3] 3R_27166789_INS [dm6]	T	TT	1.931e^-4	0.895	INTRON spn-D	regulatory region REDfly_CRMs
2R	16550381	2R_16550381_SNP [dm3] 2R_20662876_SNP [dm6]	G	T	1.933e^-4	0.895	UTR_3_PRIME Fem-1 DOWNSTREAM CG13437	TF binding site mE1_TFBS_cad
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	1.946e^-4	0.897	INTERGENIC
2R	16431980	2R_16431980_INS [dm3] 2R_20544475_INS [dm6]	A	AA	1.947e^-4	0.897	INTERGENIC
2L	11345361	2L_11345361_SNP [dm3] 2L_11345361_SNP [dm6]	T	C	1.952e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	17066770	3R_17066770_SNP [dm3] 3R_21241048_SNP [dm6]	G	A	1.974e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
X	5213595	X_5213595_SNP [dm3] X_5319562_SNP [dm6]	G	A	1.980e^-4	0.9	SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	1.999e^-4	0.9	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12138528	2R_12138528_SNP [dm3] 2R_16251023_SNP [dm6]	C	T	2.002e^-4	0.9	INTRON CngA
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	2.003e^-4	0.9	SYNONYMOUS_CODING msps
2R	1243683	2R_1243683_SNP [dm3] 2R_5356178_SNP [dm6]	G	A	2.004e^-4	0.9	INTERGENIC	insulator Insulator_Class_I.mE01
3L	3914077	3L_3914077_SNP [dm3] 3L_3914077_SNP [dm6]	C	T	2.013e^-4	0.9	INTRON Eip63F-1
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	2.018e^-4	0.9	INTRON Pvf3
2L	15466105	2L_15466105_SNP [dm3] 2L_15466105_SNP [dm6]	A	T	2.043e^-4	0.9	INTERGENIC
3L	7177613	3L_7177613_SNP [dm3] 3L_7184513_SNP [dm6]	G	C	2.045e^-4	0.9	INTRON Dscam2
X	11190464	X_11190464_SNP [dm3] X_11296431_SNP [dm6]	A	C	2.049e^-4	0.9	INTRON CG44422
2R	12802032	2R_12802032_SNP [dm3] 2R_16914527_SNP [dm6]	A	C	2.056e^-4	0.9	INTERGENIC
3L	3960303	3L_3960303_SNP [dm3] 3L_3960303_SNP [dm6]	A	T	2.063e^-4	0.9	UPSTREAM CG12605 INTRON CG12605
2L	1360249	2L_1360249_SNP [dm3] 2L_1360249_SNP [dm6]	A	G	2.076e^-4	0.9	SYNONYMOUS_CODING NLaz UPSTREAM CG31659
3L	1281763	3L_1281763_SNP [dm3] 3L_1281763_SNP [dm6]	G	C	2.080e^-4	0.9	INTRON CG32333
2L	8958740	2L_8958740_SNP [dm3] 2L_8958740_SNP [dm6]	G	A	2.086e^-4	0.9	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12877254	2R_12877254_SNP [dm3] 2R_16989749_SNP [dm6]	A	G	2.086e^-4	0.9	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8347751	2L_8347751_SNP [dm3] 2L_8347751_SNP [dm6]	T	A	2.088e^-4	0.9	INTRON CG7778
3R	18983791	3R_18983791_SNP [dm3] 3R_23158069_SNP [dm6]	A	T	2.088e^-4	0.9	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	2.088e^-4	0.9	INTERGENIC
3R	20898756	3R_20898756_SNP [dm3] 3R_25073034_SNP [dm6]	G	A	2.093e^-4	0.9	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
2L	5811164	2L_5811164_SNP [dm3] 2L_5811164_SNP [dm6]	C	T	2.109e^-4	0.9	UPSTREAM CG43307 DOWNSTREAM CR44575 & 1 other INTERGENIC
X	5034832	X_5034832_SNP [dm3] X_5140799_SNP [dm6]	G	C	2.116e^-4	0.9	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2L	17696497	2L_17696497_SNP [dm3] 2L_17696497_SNP [dm6]	C	T	2.118e^-4	0.9	INTRON CadN
3L	939423	3L_939423_SNP [dm3] 3L_939423_SNP [dm6]	G	C	2.133e^-4	0.9	INTRON Glut1
2L	12982236	2L_12982236_INS [dm3] 2L_12982236_INS [dm6]	A	AA	2.134e^-4	0.9	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11754400	2L_11754400_SNP [dm3] 2L_11754400_SNP [dm6]	C	A	2.137e^-4	0.9	UPSTREAM CG42470 & 1 other INTRON Sfp33A1
2R	17873118	2R_17873118_SNP [dm3] 2R_21985613_SNP [dm6]	A	T	2.141e^-4	0.9	DOWNSTREAM CG30401 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14283427	2R_14283427_SNP [dm3] 2R_18395922_SNP [dm6]	T	G	2.146e^-4	0.9	DOWNSTREAM Idgf5 & 1 other INTERGENIC
3R	7964250	3R_7964250_SNP [dm3] 3R_12138528_SNP [dm6]	C	G	2.150e^-4	0.9	DOWNSTREAM dpr15 INTERGENIC
3R	6443034	3R_6443034_SNP [dm3] 3R_10617312_SNP [dm6]	C	A	2.157e^-4	0.9	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	2.162e^-4	0.9	INTERGENIC
3R	26199301	3R_26199301_SNP [dm3] 3R_30373579_SNP [dm6]	C	A	2.163e^-4	0.9	INTERGENIC
2L	8958692	2L_8958692_SNP [dm3] 2L_8958692_SNP [dm6]	G	A	2.174e^-4	0.9	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11769351	2L_11769351_SNP [dm3] 2L_11769351_SNP [dm6]	T	A	2.184e^-4	0.9	INTERGENIC
2L	11769368	2L_11769368_SNP [dm3] 2L_11769368_SNP [dm6]	T	C	2.184e^-4	0.9	INTERGENIC
2L	6302461	2L_6302461_SNP [dm3] 2L_6302461_SNP [dm6]	C	G	2.185e^-4	0.9	INTRON Ddr
2L	5812993	2L_5812993_SNP [dm3] 2L_5812993_SNP [dm6]	A	C	2.192e^-4	0.9	INTERGENIC
3L	19013660	3L_19013660_SNP [dm3] 3L_19020560_SNP [dm6]	G	C	2.200e^-4	0.9	INTRON nkd
2L	7792782	2L_7792782_SNP [dm3] 2L_7792782_SNP [dm6]	T	G	2.202e^-4	0.9	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.203e^-4	0.9	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13129512	3L_13129512_SNP [dm3] 3L_13136412_SNP [dm6]	A	T	2.210e^-4	0.9	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12764490	2L_12764490_SNP [dm3] 2L_12764490_SNP [dm6]	T	C	2.210e^-4	0.9	INTERGENIC
3R	20380744	3R_20380744_SNP [dm3] 3R_24555022_SNP [dm6]	G	A	2.224e^-4	0.9	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12179421	3L_12179421_SNP [dm3] 3L_12186321_SNP [dm6]	A	G	2.231e^-4	0.9	INTRON CG6910
3R	6548034	3R_6548034_SNP [dm3] 3R_10722312_SNP [dm6]	T	C	2.234e^-4	0.9	INTERGENIC
3R	22294769	3R_22294769_SNP [dm3] 3R_26469047_SNP [dm6]	T	C	2.242e^-4	0.9	INTRON CG5455
2R	1336414	2R_1336414_SNP [dm3] 2R_5448909_SNP [dm6]	C	T	2.246e^-4	0.9	DOWNSTREAM laccase2 INTRON laccase2	transposable element FlyBase
X	6409874	X_6409874_SNP [dm3] X_6515841_SNP [dm6]	A	C	2.247e^-4	0.9	INTRON CG42340
2R	6544151	2R_6544151_SNP [dm3] 2R_10656646_SNP [dm6]	C	T	2.251e^-4	0.9	DOWNSTREAM CR44452 INTERGENIC
3L	914205	3L_914205_SNP [dm3] 3L_914205_SNP [dm6]	C	G	2.253e^-4	0.9	START_GAINED Glut1 UTR_5_PRIME Glut1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17065649	2R_17065649_SNP [dm3] 2R_21178144_SNP [dm6]	A	G	2.260e^-4	0.9	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19893723	2R_19893723_SNP [dm3] 2R_24006200_SNP [dm6]	A	G	2.265e^-4	0.9	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4142571	3R_4142571_SNP [dm3] 3R_8316849_SNP [dm6]	T	C	2.271e^-4	0.9	UPSTREAM CR45215 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13639794	3L_13639794_SNP [dm3] 3L_13646694_SNP [dm6]	C	T	2.291e^-4	0.9	INTRON bru-3
X	16640118	X_16640118_SNP [dm3] X_16746085_SNP [dm6]	T	C	2.296e^-4	0.9	UPSTREAM CG9634 INTRON CG9634
3L	12046227	3L_12046227_SNP [dm3] 3L_12053127_SNP [dm6]	G	A	2.297e^-4	0.9	INTRON rols
3R	14619219	3R_14619219_SNP [dm3] 3R_18793497_SNP [dm6]	A	C	2.299e^-4	0.9	UTR_5_PRIME CG7720 INTRON CG7720
3L	3960289	3L_3960289_SNP [dm3] 3L_3960289_SNP [dm6]	G	C	2.299e^-4	0.9	UPSTREAM CG12605 INTRON CG12605
2R	12389741	2R_12389741_SNP [dm3] 2R_16502236_SNP [dm6]	T	G	2.303e^-4	0.9	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3R	23258853	3R_23258853_SNP [dm3] 3R_27433131_SNP [dm6]	A	G	2.306e^-4	0.9	INTRON side
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	2.332e^-4	0.9	UPSTREAM hoe1 INTRON hoe1
3L	14615690	3L_14615690_SNP [dm3] 3L_14622590_SNP [dm6]	C	T	2.336e^-4	0.9	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	11769105	2L_11769105_SNP [dm3] 2L_11769105_SNP [dm6]	T	C	2.336e^-4	0.9	INTERGENIC
2L	8958610	2L_8958610_SNP [dm3] 2L_8958610_SNP [dm6]	T	A	2.336e^-4	0.9	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	3301698	2R_3301698_SNP [dm3] 2R_7414193_SNP [dm6]	G	T	2.338e^-4	0.9	INTERGENIC
2R	12138541	2R_12138541_SNP [dm3] 2R_16251036_SNP [dm6]	G	T	2.338e^-4	0.9	INTRON CngA
X	9093545	X_9093545_SNP [dm3] X_9199512_SNP [dm6]	G	A	2.346e^-4	0.9	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3960282	3L_3960282_SNP [dm3] 3L_3960282_SNP [dm6]	G	C	2.355e^-4	0.9	UPSTREAM CG12605 INTRON CG12605
3R	6922819	3R_6922819_SNP [dm3] 3R_11097097_SNP [dm6]	C	T	2.359e^-4	0.9	INTERGENIC
3L	17815482	3L_17815482_SNP [dm3] 3L_17822382_SNP [dm6]	A	C	2.370e^-4	0.9	UPSTREAM Grd INTRON Ir75c
2L	1545443	2L_1545443_SNP [dm3] 2L_1545443_SNP [dm6]	A	T	2.376e^-4	0.9	INTERGENIC
3L	6636954	3L_6636954_SNP [dm3] 3L_6643854_SNP [dm6]	A	C	2.380e^-4	0.9	INTERGENIC
X	6311282	X_6311282_SNP [dm3] X_6417249_SNP [dm6]	G	T	2.382e^-4	0.9	INTERGENIC
X	13613801	X_13613801_SNP [dm3] X_13719768_SNP [dm6]	T	G	2.384e^-4	0.9	SYNONYMOUS_CODING CG9941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12982257	2L_12982257_SNP [dm3] 2L_12982257_SNP [dm6]	T	C	2.388e^-4	0.9	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4935045	2L_4935045_SNP [dm3] 2L_4935045_SNP [dm6]	G	A	2.402e^-4	0.9	SYNONYMOUS_CODING hoe2
2R	19109672	2R_19109672_SNP [dm3] 2R_23222149_SNP [dm6]	G	T	2.409e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13464065	3L_13464065_SNP [dm3] 3L_13470965_SNP [dm6]	T	C	2.410e^-4	0.9	INTRON CG10089	TF binding site mE1_TFBS_cad
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	2.413e^-4	0.9	INTERGENIC
2L	18628348	2L_18628348_SNP [dm3] 2L_18628348_SNP [dm6]	T	C	2.420e^-4	0.9	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
3R	4759502	3R_4759502_SNP [dm3] 3R_8933780_SNP [dm6]	G	A	2.422e^-4	0.9	DOWNSTREAM CR44020 INTERGENIC
2L	8957182	2L_8957182_SNP [dm3] 2L_8957182_SNP [dm6]	C	T	2.425e^-4	0.9	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18569066	X_18569066_INS [dm3] X_18675033_INS [dm6]	A	AA	2.429e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7255657	3L_7255657_SNP [dm3] 3L_7262557_SNP [dm6]	C	G	2.434e^-4	0.9	INTRON CG14830
3R	17481292	3R_17481292_SNP [dm3] 3R_21655570_SNP [dm6]	A	T	2.441e^-4	0.9	INTRON E2f	TF binding site BDTNP1_TFBS_da
3L	9955145	3L_9955145_SNP [dm3] 3L_9962045_SNP [dm6]	A	G	2.458e^-4	0.9	INTRON CG34356
3L	13353105	3L_13353105_SNP [dm3] 3L_13360005_SNP [dm6]	C	T	2.462e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15553812	2L_15553812_INS [dm3] 2L_15553812_INS [dm6]	T	TG	2.462e^-4	0.9	INTRON kek3
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	2.465e^-4	0.9	INTRON sNPF
3R	21249851	3R_21249851_SNP [dm3] 3R_25424129_SNP [dm6]	A	G	2.466e^-4	0.9	INTRON Fur1
2L	8343657	2L_8343657_DEL [dm3] 2L_8343657_DEL [dm6]	AGCTGGAGGAGCA...	A	2.486e^-4	0.9	CODON_DELETION CG14273 EXON CR45371
2L	8955919	2L_8955919_SNP [dm3] 2L_8955919_SNP [dm6]	C	T	2.489e^-4	0.9	UPSTREAM CG31886 INTRON CG31886	TF binding site mE1_TFBS_eve
3L	18559692	3L_18559692_SNP [dm3] 3L_18566592_SNP [dm6]	G	T	2.531e^-4	0.9	INTRON AstC-R1
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	2.536e^-4	0.9	INTRON Octbeta3R
2L	16222467	2L_16222467_SNP [dm3] 2L_16222467_SNP [dm6]	A	T	2.542e^-4	0.9	INTERGENIC
2R	12877263	2R_12877263_SNP [dm3] 2R_16989758_SNP [dm6]	G	A	2.544e^-4	0.9	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	2.565e^-4	0.9	INTERGENIC
3R	8810453	3R_8810453_SNP [dm3] 3R_12984731_SNP [dm6]	C	A	2.566e^-4	0.9	UTR_3_PRIME Paip2 DOWNSTREAM Paip2
2L	5292966	2L_5292966_INS [dm3] 2L_5292966_INS [dm6]	C	CAGAAC	2.573e^-4	0.9	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	2.575e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1689053	3L_1689053_SNP [dm3] 3L_1689053_SNP [dm6]	C	T	2.577e^-4	0.9	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	3257235	2R_3257235_SNP [dm3] 2R_7369730_SNP [dm6]	C	A	2.580e^-4	0.9	INTRON Dscam1
3R	15442770	3R_15442770_SNP [dm3] 3R_19617048_SNP [dm6]	A	C	2.582e^-4	0.9	INTRON CG6231
3R	21264908	3R_21264908_SNP [dm3] 3R_25439186_SNP [dm6]	A	T	2.587e^-4	0.9	INTRON Fur1
3L	9543492	3L_9543492_SNP [dm3] 3L_9550392_SNP [dm6]	C	T	2.587e^-4	0.9	INTRON CG42673
3L	12382313	3L_12382313_SNP [dm3] 3L_12389213_SNP [dm6]	C	A	2.587e^-4	0.9	INTRON Ncc69
3L	3960284	3L_3960284_SNP [dm3] 3L_3960284_SNP [dm6]	T	G	2.592e^-4	0.9	UPSTREAM CG12605 INTRON CG12605
2L	1611801	2L_1611801_SNP [dm3] 2L_1611801_SNP [dm6]	A	G	2.597e^-4	0.9	SYNONYMOUS_CODING CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	8532736	3R_8532736_SNP [dm3] 3R_12707014_SNP [dm6]	A	T	2.599e^-4	0.9	SPLICE_SITE_REGION mus308 INTRON mus308	TF binding site mE1_TFBS_cad
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	2.602e^-4	0.9	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	2.602e^-4	0.9	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	2.602e^-4	0.9	INTERGENIC
3L	9858621	3L_9858621_DEL [dm3] 3L_9865521_DEL [dm6]	CAG	C	2.605e^-4	0.9	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
2L	15330295	2L_15330295_SNP [dm3] 2L_15330295_SNP [dm6]	T	A	2.606e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3R	21248493	3R_21248493_SNP [dm3] 3R_25422771_SNP [dm6]	C	A	2.621e^-4	0.9	INTRON Fur1
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	2.625e^-4	0.9	INTRON vir-1
3R	14144874	3R_14144874_SNP [dm3] 3R_18319152_SNP [dm6]	C	G	2.630e^-4	0.9	INTRON CG31235
3L	18117552	3L_18117552_SNP [dm3] 3L_18124452_SNP [dm6]	T	C	2.636e^-4	0.9	INTERGENIC
3R	6514764	3R_6514764_SNP [dm3] 3R_10689042_SNP [dm6]	C	A	2.643e^-4	0.9	INTRON Skeletor	TF binding site mE1_TFBS_cad
2L	1338850	2L_1338850_SNP [dm3] 2L_1338850_SNP [dm6]	C	T	2.650e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9379448	3R_9379448_INS [dm3] 3R_13553726_INS [dm6]	G	GG	2.655e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16581847	2R_16581847_SNP [dm3] 2R_20694342_SNP [dm6]	A	C	2.657e^-4	0.9	DOWNSTREAM CG13438 INTERGENIC
2L	12312338	2L_12312338_SNP [dm3] 2L_12312338_SNP [dm6]	A	G	2.659e^-4	0.9	DOWNSTREAM aret INTRON aret
3R	8807786	3R_8807786_SNP [dm3] 3R_12982064_SNP [dm6]	C	T	2.659e^-4	0.9	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12853844	2R_12853844_SNP [dm3] 2R_16966339_SNP [dm6]	T	C	2.661e^-4	0.9	INTERGENIC
3R	13805828	3R_13805828_SNP [dm3] 3R_17980106_SNP [dm6]	T	G	2.670e^-4	0.9	INTRON cpo
3L	8551164	3L_8551164_SNP [dm3] 3L_8558064_SNP [dm6]	A	T	2.671e^-4	0.9	UTR_5_PRIME rhea INTRON rhea	TF binding site mE1_TFBS_HSA
2R	12138527	2R_12138527_SNP [dm3] 2R_16251022_SNP [dm6]	A	C	2.671e^-4	0.9	INTRON CngA
3R	17066783	3R_17066783_SNP [dm3] 3R_21241061_SNP [dm6]	T	A	2.676e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2L	12996100	2L_12996100_SNP [dm3] 2L_12996100_SNP [dm6]	T	C	2.685e^-4	0.9	INTRON CG12404
3L	1003336	3L_1003336_SNP [dm3] 3L_1003336_SNP [dm6]	G	A	2.690e^-4	0.9	INTRON trio	TF binding site mE1_TFBS_chinmo
2R	12138539	2R_12138539_SNP [dm3] 2R_16251034_SNP [dm6]	T	G	2.690e^-4	0.9	INTRON CngA
2L	16240740	2L_16240740_SNP [dm3] 2L_16240740_SNP [dm6]	G	A	2.717e^-4	0.9	UTR_3_PRIME CG42817 DOWNSTREAM CG42817
2L	13680766	2L_13680766_SNP [dm3] 2L_13680766_SNP [dm6]	C	T	2.721e^-4	0.9	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	12556492	3L_12556492_SNP [dm3] 3L_12563392_SNP [dm6]	A	T	2.742e^-4	0.9	INTRON sowah
3R	14845602	3R_14845602_SNP [dm3] 3R_19019880_SNP [dm6]	G	A	2.747e^-4	0.9	UTR_3_PRIME gukh INTRON gukh
2R	17873923	2R_17873923_SNP [dm3] 2R_21986418_SNP [dm6]	C	G	2.750e^-4	0.9	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6581004	2L_6581004_SNP [dm3] 2L_6581004_SNP [dm6]	A	C	2.754e^-4	0.9	INTRON CG11319
3L	10700395	3L_10700395_SNP [dm3] 3L_10707295_SNP [dm6]	A	G	2.755e^-4	0.9	INTERGENIC
2L	4468624	2L_4468624_SNP [dm3] 2L_4468624_SNP [dm6]	C	T	2.759e^-4	0.9	DOWNSTREAM CG17840 INTRON ine	TF binding site mE1_TFBS_cad
3L	21475879	3L_21475879_SNP [dm3] 3L_21482779_SNP [dm6]	G	T	2.773e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	9498521	3L_9498521_SNP [dm3] 3L_9505421_SNP [dm6]	A	T	2.773e^-4	0.9	UPSTREAM path INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	2.780e^-4	0.9	DOWNSTREAM PpN58A INTRON Fili
2R	7226486	2R_7226486_SNP [dm3] 2R_11338981_SNP [dm6]	T	C	2.781e^-4	0.9	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13466841	3L_13466841_SNP [dm3] 3L_13473741_SNP [dm6]	A	G	2.784e^-4	0.9	INTRON CG10089
3L	4169199	3L_4169199_SNP [dm3] 3L_4169199_SNP [dm6]	A	G	2.785e^-4	0.9	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10938601	2R_10938601_SNP [dm3] 2R_15051096_SNP [dm6]	T	C	2.802e^-4	0.9	UPSTREAM CR43622 INTERGENIC
2L	11390725	2L_11390725_SNP [dm3] 2L_11390725_SNP [dm6]	T	G	2.802e^-4	0.9	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
3R	21247184	3R_21247184_SNP [dm3] 3R_25421462_SNP [dm6]	G	C	2.806e^-4	0.9	INTRON Fur1
2R	19233333	2R_19233333_SNP [dm3] 2R_23345810_SNP [dm6]	C	G	2.818e^-4	0.9	NON_SYNONYMOUS_CODING CG3502 UPSTREAM CG9863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9489682	X_9489682_SNP [dm3] X_9595649_SNP [dm6]	C	G	2.825e^-4	0.9	DOWNSTREAM CR45543 INTERGENIC
2R	16581851	2R_16581851_SNP [dm3] 2R_20694346_SNP [dm6]	A	T	2.826e^-4	0.9	DOWNSTREAM CG13438 INTERGENIC
2L	2287292	2L_2287292_SNP [dm3] 2L_2287292_SNP [dm6]	G	C	2.845e^-4	0.9	UTR_3_PRIME CG42658 UPSTREAM CG31681
2L	7190410	2L_7190410_SNP [dm3] 2L_7190410_SNP [dm6]	A	T	2.853e^-4	0.9	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
3L	19656031	3L_19656031_SNP [dm3] 3L_19662931_SNP [dm6]	A	C	2.857e^-4	0.9	INTRON tey	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17067073	2R_17067073_SNP [dm3] 2R_21179568_SNP [dm6]	G	A	2.857e^-4	0.9	SYNONYMOUS_CODING Pu UPSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18560093	3L_18560093_SNP [dm3] 3L_18566993_SNP [dm6]	T	A	2.859e^-4	0.9	INTRON AstC-R1
2R	10948396	2R_10948396_SNP [dm3] 2R_15060891_SNP [dm6]	A	C	2.860e^-4	0.9	INTERGENIC
2L	15138860	2L_15138860_SNP [dm3] 2L_15138860_SNP [dm6]	T	C	2.866e^-4	0.9	INTERGENIC
2R	3264986	2R_3264986_SNP [dm3] 2R_7377481_SNP [dm6]	C	A	2.869e^-4	0.9	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17649869	2R_17649869_DEL [dm3] 2R_21762364_DEL [dm6]	GGGAATGGAG	G	2.874e^-4	0.9	DOWNSTREAM CR43983 INTERGENIC
3L	18220381	3L_18220381_SNP [dm3] 3L_18227281_SNP [dm6]	C	T	2.875e^-4	0.9	INTERGENIC
2L	13842596	2L_13842596_SNP [dm3] 2L_13842596_SNP [dm6]	T	C	2.879e^-4	0.9	DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	11455531	3R_11455531_SNP [dm3] 3R_15629809_SNP [dm6]	C	T	2.884e^-4	0.9	INTERGENIC
2L	14340040	2L_14340040_SNP [dm3] 2L_14340040_SNP [dm6]	A	G	2.885e^-4	0.9	UTR_3_PRIME CG15286 INTRON CG33090
3L	2984310	3L_2984310_SNP [dm3] 3L_2984310_SNP [dm6]	A	C	2.889e^-4	0.9	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18567307	X_18567307_SNP [dm3] X_18673274_SNP [dm6]	G	T	2.891e^-4	0.9	INTERGENIC
2R	10947842	2R_10947842_SNP [dm3] 2R_15060337_SNP [dm6]	T	G	2.892e^-4	0.9	INTERGENIC
2L	8751610	2L_8751610_SNP [dm3] 2L_8751610_SNP [dm6]	G	A	2.893e^-4	0.9	UPSTREAM CG12438 DOWNSTREAM CG45307 INTERGENIC
3L	10727232	3L_10727232_SNP [dm3] 3L_10734132_SNP [dm6]	G	T	2.898e^-4	0.9	INTERGENIC
3R	7939997	3R_7939997_SNP [dm3] 3R_12114275_SNP [dm6]	C	A	2.903e^-4	0.9	INTERGENIC
X	3780880	X_3780880_SNP [dm3] X_3886847_SNP [dm6]	G	A	2.906e^-4	0.9	INTRON CG15239
3L	19387378	3L_19387378_SNP [dm3] 3L_19394278_SNP [dm6]	C	A	2.906e^-4	0.9	INTRON CG32206
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	2.910e^-4	0.9	INTRON CG18769 & 1 other
2L	6914176	2L_6914176_SNP [dm3] 2L_6914176_SNP [dm6]	A	G	2.921e^-4	0.9	UPSTREAM Wee1 DOWNSTREAM x16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	2.921e^-4	0.9	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3259664	2R_3259664_SNP [dm3] 2R_7372159_SNP [dm6]	G	A	2.921e^-4	0.9	INTRON Dscam1	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2L	1647175	2L_1647175_SNP [dm3] 2L_1647175_SNP [dm6]	G	A	2.952e^-4	0.9	UPSTREAM CR45695 INTERGENIC
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	2.954e^-4	0.9	UTR_3_PRIME CG5278
2L	17410606	2L_17410606_SNP [dm3] 2L_17410606_SNP [dm6]	A	C	2.955e^-4	0.9	UPSTREAM CG15141 & 1 other DOWNSTREAM CLIP-190 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18117434	3L_18117434_SNP [dm3] 3L_18124334_SNP [dm6]	G	C	2.960e^-4	0.9	INTERGENIC
2L	18694502	2L_18694502_SNP [dm3] 2L_18694502_SNP [dm6]	A	G	2.968e^-4	0.9	INTRON CG10383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_ttk
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	2.971e^-4	0.9	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
X	19747288	X_19747288_SNP [dm3] X_19853255_SNP [dm6]	G	A	2.971e^-4	0.9	NON_SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2R	17606080	2R_17606080_SNP [dm3] 2R_21718575_SNP [dm6]	C	A	2.978e^-4	0.9	SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11408641	2L_11408641_SNP [dm3] 2L_11408641_SNP [dm6]	G	A	2.982e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2L	11390854	2L_11390854_SNP [dm3] 2L_11390854_SNP [dm6]	A	G	2.985e^-4	0.9	SPLICE_SITE_REGION CR43681 INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2R	17355296	2R_17355296_SNP [dm3] 2R_21467791_SNP [dm6]	G	T	2.988e^-4	0.9	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	2.990e^-4	0.9	INTERGENIC
3L	19655662	3L_19655662_SNP [dm3] 3L_19662562_SNP [dm6]	A	G	3.000e^-4	0.9	INTRON tey	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10901182	2R_10901182_SNP [dm3] 2R_15013677_SNP [dm6]	T	C	3.008e^-4	0.9	UPSTREAM CG43101 INTRON hbs
2R	15129275	2R_15129275_SNP [dm3] 2R_19241770_SNP [dm6]	T	C	3.008e^-4	0.9	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad
2R	8607331	2R_8607331_SNP [dm3] 2R_12719826_SNP [dm6]	A	G	3.012e^-4	0.9	INTRON CG42663
2L	13414935	2L_13414935_SNP [dm3] 2L_13414935_SNP [dm6]	T	A	3.012e^-4	0.9	UPSTREAM CG42784 & 2 others INTERGENIC
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	3.013e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12494614	2L_12494614_SNP [dm3] 2L_12494614_SNP [dm6]	C	A	3.015e^-4	0.9	INTRON bun
2R	18175104	2R_18175104_SNP [dm3] 2R_22287599_SNP [dm6]	A	T	3.015e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	3.016e^-4	0.9	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7069808	2R_7069808_SNP [dm3] 2R_11182303_SNP [dm6]	T	G	3.018e^-4	0.9	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12988944	2L_12988944_SNP [dm3] 2L_12988944_SNP [dm6]	A	T	3.021e^-4	0.9	INTERGENIC
2L	16241596	2L_16241596_SNP [dm3] 2L_16241596_SNP [dm6]	A	G	3.022e^-4	0.9	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
3R	10728938	3R_10728938_SNP [dm3] 3R_14903216_SNP [dm6]	C	G	3.028e^-4	0.9	UTR_3_PRIME VhaPPA1-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	6550322	3R_6550322_SNP [dm3] 3R_10724600_SNP [dm6]	C	T	3.029e^-4	0.9	INTERGENIC
3L	20932715	3L_20932715_SNP [dm3] 3L_20939615_SNP [dm6]	C	T	3.030e^-4	0.9	INTRON fng
2L	7968790	2L_7968790_INS [dm3] 2L_7968790_INS [dm6]	G	GAG	3.031e^-4	0.9	INTRON Snoo
3R	16473179	3R_16473179_SNP [dm3] 3R_20647457_SNP [dm6]	T	G	3.034e^-4	0.9	SYNONYMOUS_CODING GluRIIE
2R	10837917	2R_10837917_SNP [dm3] 2R_14950412_SNP [dm6]	A	G	3.038e^-4	0.9	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_sens
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	3.038e^-4	0.9	UPSTREAM CG3306 & 1 other INTERGENIC
2R	3345263	2R_3345263_DEL [dm3] 2R_7457758_DEL [dm6]	ACCAGCC	T	3.039e^-4	0.9	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12810334	2R_12810334_SNP [dm3] 2R_16922829_SNP [dm6]	G	A	3.042e^-4	0.9	INTERGENIC
2L	15330359	2L_15330359_SNP [dm3] 2L_15330359_SNP [dm6]	G	T	3.043e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	7307318	3L_7307318_DEL [dm3] 3L_7314218_DEL [dm6]	TTAATAAA	T	3.063e^-4	0.9	INTERGENIC
3R	5080032	3R_5080032_SNP [dm3] 3R_9254310_SNP [dm6]	G	T	3.072e^-4	0.9	UPSTREAM CG16734 DOWNSTREAM St2 EXON CR16735	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13414867	2L_13414867_SNP [dm3] 2L_13414867_SNP [dm6]	G	A	3.087e^-4	0.9	UPSTREAM CG42784 & 2 others INTERGENIC
2L	12806925	2L_12806925_SNP [dm3] 2L_12806925_SNP [dm6]	T	G	3.097e^-4	0.9	DOWNSTREAM CR43818 INTERGENIC
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	3.108e^-4	0.9	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	2342343	2L_2342343_SNP [dm3] 2L_2342343_SNP [dm6]	C	T	3.118e^-4	0.9	INTRON CG9967 & 1 other
3L	5673294	3L_5673294_SNP [dm3] 3L_5680194_SNP [dm6]	G	A	3.138e^-4	0.9	INTRON sif
3R	9728277	3R_9728277_INS [dm3] 3R_13902555_INS [dm6]	T	TGCA	3.142e^-4	0.9	CODON_INSERTION ems	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1072336	2R_1072336_INS [dm3] 2R_5184831_INS [dm6]	C	CGCC	3.142e^-4	0.9	INTRON Nipped-A
2R	17065650	2R_17065650_SNP [dm3] 2R_21178145_SNP [dm6]	G	T	3.155e^-4	0.9	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10952695	2R_10952695_SNP [dm3] 2R_15065190_SNP [dm6]	T	G	3.161e^-4	0.9	INTERGENIC
2R	12802213	2R_12802213_SNP [dm3] 2R_16914708_SNP [dm6]	G	C	3.161e^-4	0.9	INTERGENIC
3R	24672373	3R_24672373_SNP [dm3] 3R_28846651_SNP [dm6]	G	A	3.162e^-4	0.9	INTRON spg	TF binding site BDTNP1_TFBS_dl
2L	11390624	2L_11390624_SNP [dm3] 2L_11390624_SNP [dm6]	C	G	3.172e^-4	0.9	EXON CR43681	regulatory region REDfly_CRMs
3L	12052471	3L_12052471_SNP [dm3] 3L_12059371_SNP [dm6]	G	A	3.180e^-4	0.9	INTRON rols
3R	8873750	3R_8873750_SNP [dm3] 3R_13048028_SNP [dm6]	A	G	3.186e^-4	0.9	SYNONYMOUS_CODING CG31157 DOWNSTREAM Hsc70-2
3R	11106839	3R_11106839_SNP [dm3] 3R_15281117_SNP [dm6]	G	T	3.189e^-4	0.9	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	6051124	3R_6051124_SNP [dm3] 3R_10225402_SNP [dm6]	T	C	3.192e^-4	0.9	UTR_3_PRIME CG34107 UPSTREAM CG42795 & 1 other
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	3.195e^-4	0.9	INTRON mam
3L	1277481	3L_1277481_SNP [dm3] 3L_1277481_SNP [dm6]	C	T	3.201e^-4	0.9	INTRON CG32333
2R	20222349	2R_20222349_SNP [dm3] 2R_24334826_SNP [dm6]	C	G	3.207e^-4	0.9	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	13466380	3L_13466380_SNP [dm3] 3L_13473280_SNP [dm6]	C	T	3.216e^-4	0.9	INTRON CG10089
X	13613817	X_13613817_SNP [dm3] X_13719784_SNP [dm6]	T	C	3.218e^-4	0.9	NON_SYNONYMOUS_CODING CG9941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16248381	2L_16248381_SNP [dm3] 2L_16248381_SNP [dm6]	C	A	3.218e^-4	0.9	INTRON PRL-1
3R	11580407	3R_11580407_SNP [dm3] 3R_15754685_SNP [dm6]	A	G	3.219e^-4	0.9	INTERGENIC
2R	13119500	2R_13119500_SNP [dm3] 2R_17231995_SNP [dm6]	G	C	3.223e^-4	0.9	INTRON mbl
3R	17066917	3R_17066917_SNP [dm3] 3R_21241195_SNP [dm6]	G	A	3.240e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2R	16242082	2R_16242082_SNP [dm3] 2R_20354577_SNP [dm6]	C	T	3.246e^-4	0.9	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8080638	X_8080638_SNP [dm3] X_8186605_SNP [dm6]	G	T	3.256e^-4	0.9	INTRON sdt
2R	12810419	2R_12810419_SNP [dm3] 2R_16922914_SNP [dm6]	A	G	3.259e^-4	0.9	INTERGENIC
2L	8219353	2L_8219353_SNP [dm3] 2L_8219353_SNP [dm6]	G	C	3.270e^-4	0.9	INTRON Snx6
X	316969	X_316969_SNP [dm3] X_422936_SNP [dm6]	C	A	3.271e^-4	0.9	INTRON CG32816
3R	21241916	3R_21241916_SNP [dm3] 3R_25416194_SNP [dm6]	T	C	3.296e^-4	0.9	INTRON Fur1
2L	13414932	2L_13414932_SNP [dm3] 2L_13414932_SNP [dm6]	A	G	3.298e^-4	0.9	UPSTREAM CG42784 & 2 others INTERGENIC
2L	14300390	2L_14300390_DEL [dm3] 2L_14300390_DEL [dm6]	TC	T	3.304e^-4	0.9	UPSTREAM wb INTRON wb
3R	6282731	3R_6282731_SNP [dm3] 3R_10457009_SNP [dm6]	T	C	3.311e^-4	0.9	INTERGENIC
3R	20898755	3R_20898755_SNP [dm3] 3R_25073033_SNP [dm6]	A	T	3.320e^-4	0.9	NON_SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
3R	8119638	3R_8119638_SNP [dm3] 3R_12293916_SNP [dm6]	T	C	3.323e^-4	0.9	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	3.331e^-4	0.9	INTERGENIC
2R	12901778	2R_12901778_SNP [dm3] 2R_17014273_SNP [dm6]	C	G	3.333e^-4	0.9	INTRON Ehbp1
2L	7968921	2L_7968921_DEL [dm3] 2L_7968921_DEL [dm6]	TT	T	3.343e^-4	0.9	INTRON Snoo
2L	15100021	2L_15100021_SNP [dm3] 2L_15100021_SNP [dm6]	A	T	3.344e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6286616	3R_6286616_SNP [dm3] 3R_10460894_SNP [dm6]	T	C	3.349e^-4	0.9	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13607539	3R_13607539_SNP [dm3] 3R_17781817_SNP [dm6]	A	C	3.356e^-4	0.9	INTRON CG43102
3R	6241820	3R_6241820_SNP [dm3] 3R_10416098_SNP [dm6]	C	G	3.364e^-4	0.9	UPSTREAM CG6345 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	3.375e^-4	0.9	INTRON VGlut
3R	18983635	3R_18983635_DEL [dm3] 3R_23157913_DEL [dm6]	AA	A	3.379e^-4	0.9	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18200356	2R_18200356_DEL [dm3] 2R_22312851_DEL [dm6]	GGTTTCGGGTGATATCACCC...	G	3.390e^-4	0.9	UPSTREAM CR44758 & 1 other INTERGENIC EXON CR44758
2L	10343375	2L_10343375_SNP [dm3] 2L_10343375_SNP [dm6]	A	T	3.391e^-4	0.9	DOWNSTREAM CG31715 INTRON Sps2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	3.394e^-4	0.9	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13822611	2L_13822611_SNP [dm3] 2L_13822611_SNP [dm6]	A	T	3.395e^-4	0.9	INTRON b
X	6137091	X_6137091_SNP [dm3] X_6243058_SNP [dm6]	G	A	3.397e^-4	0.9	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11416243	3R_11416243_SNP [dm3] 3R_15590521_SNP [dm6]	G	A	3.405e^-4	0.9	INTERGENIC
3R	6550478	3R_6550478_SNP [dm3] 3R_10724756_SNP [dm6]	T	A	3.410e^-4	0.9	INTERGENIC
3R	6241845	3R_6241845_SNP [dm3] 3R_10416123_SNP [dm6]	T	C	3.416e^-4	0.9	UPSTREAM CG6345 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16242797	2L_16242797_SNP [dm3] 2L_16242797_SNP [dm6]	A	G	3.416e^-4	0.9	SYNONYMOUS_CODING CG42818	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	3.425e^-4	0.9	INTRON Cad87A
3R	11474441	3R_11474441_SNP [dm3] 3R_15648719_SNP [dm6]	T	C	3.425e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17276161	2R_17276161_SNP [dm3] 2R_21388656_SNP [dm6]	C	T	3.428e^-4	0.9	SYNONYMOUS_CODING Acox57D-p UPSTREAM Acox57D-d
3R	6930710	3R_6930710_SNP [dm3] 3R_11104988_SNP [dm6]	C	T	3.430e^-4	0.9	INTERGENIC
2L	8958708	2L_8958708_SNP [dm3] 2L_8958708_SNP [dm6]	T	C	3.433e^-4	0.9	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12811296	2R_12811296_SNP [dm3] 2R_16923791_SNP [dm6]	C	T	3.434e^-4	0.9	UPSTREAM Pkc53E INTERGENIC
2L	1626076	2L_1626076_DEL [dm3] 2L_1626076_DEL [dm6]	TT	T	3.448e^-4	0.9	UPSTREAM CR44603 INTERGENIC
3L	13467287	3L_13467287_SNP [dm3] 3L_13474187_SNP [dm6]	C	G	3.451e^-4	0.9	INTRON CG10089
3L	13467291	3L_13467291_SNP [dm3] 3L_13474191_SNP [dm6]	G	A	3.451e^-4	0.9	INTRON CG10089
3R	13081529	3R_13081529_SNP [dm3] 3R_17255807_SNP [dm6]	G	T	3.469e^-4	0.9	INTRON beat-IIb
3R	13081532	3R_13081532_SNP [dm3] 3R_17255810_SNP [dm6]	T	C	3.469e^-4	0.9	INTRON beat-IIb
2L	2500876	2L_2500876_SNP [dm3] 2L_2500876_SNP [dm6]	G	T	3.470e^-4	0.9	INTERGENIC
2R	17649841	2R_17649841_SNP [dm3] 2R_21762336_SNP [dm6]	A	T	3.474e^-4	0.9	DOWNSTREAM CR43983 INTERGENIC
3L	5073331	3L_5073331_SNP [dm3] 3L_5073331_SNP [dm6]	G	A	3.476e^-4	0.9	INTRON Con
3L	19656033	3L_19656033_SNP [dm3] 3L_19662933_SNP [dm6]	G	A	3.482e^-4	0.9	INTRON tey	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12123278	2L_12123278_SNP [dm3] 2L_12123278_SNP [dm6]	G	A	3.482e^-4	0.9	INTRON CG17211
2L	8223199	2L_8223199_SNP [dm3] 2L_8223199_SNP [dm6]	A	G	3.482e^-4	0.9	INTRON Pvr
2R	3306324	2R_3306324_SNP [dm3] 2R_7418819_SNP [dm6]	T	G	3.486e^-4	0.9	UPSTREAM so INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	25758898	3R_25758898_SNP [dm3] 3R_29933176_SNP [dm6]	T	C	3.491e^-4	0.9	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3470254	3L_3470254_DEL [dm3] 3L_3470254_DEL [dm6]	TT	T	3.492e^-4	0.9	INTRON CG14971
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	3.495e^-4	0.9	INTRON ClC-a
3R	21514725	3R_21514725_SNP [dm3] 3R_25689003_SNP [dm6]	C	T	3.499e^-4	0.9	INTERGENIC
3L	14776308	3L_14776308_SNP [dm3] 3L_14783208_SNP [dm6]	C	G	3.503e^-4	0.9	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6588055	2L_6588055_INS [dm3] 2L_6588055_INS [dm6]	T	TCGCAAT	3.509e^-4	0.9	INTRON CG11319
3R	17066921	3R_17066921_SNP [dm3] 3R_21241199_SNP [dm6]	A	G	3.509e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
3L	2833272	3L_2833272_INS [dm3] 3L_2833272_INS [dm6]	G	GTACGG	3.511e^-4	0.9	INTRON CG43444
2L	14871740	2L_14871740_SNP [dm3] 2L_14871740_SNP [dm6]	A	G	3.512e^-4	0.9	SYNONYMOUS_CODING CG4480
3L	2363296	3L_2363296_SNP [dm3] 3L_2363296_SNP [dm6]	A	G	3.512e^-4	0.9	DOWNSTREAM CG13801 INTERGENIC
2L	7143208	2L_7143208_SNP [dm3] 2L_7143208_SNP [dm6]	T	A	3.527e^-4	0.9	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14244622	2L_14244622_SNP [dm3] 2L_14244622_SNP [dm6]	G	A	3.532e^-4	0.9	INTERGENIC
2R	17649831	2R_17649831_DEL [dm3] 2R_21762326_DEL [dm6]	TCA	T	3.538e^-4	0.9	DOWNSTREAM CR43983 INTERGENIC
2L	14014307	2L_14014307_SNP [dm3] 2L_14014307_SNP [dm6]	A	T	3.549e^-4	0.9	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16389562	2L_16389562_SNP [dm3] 2L_16389562_SNP [dm6]	A	G	3.549e^-4	0.9	INTERGENIC
2L	12312293	2L_12312293_SNP [dm3] 2L_12312293_SNP [dm6]	A	G	3.560e^-4	0.9	UTR_3_PRIME aret INTRON aret
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	3.562e^-4	0.9	INTERGENIC
3R	17066924	3R_17066924_INS [dm3] 3R_21241202_INS [dm6]	C	CCG	3.563e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2L	11142447	2L_11142447_SNP [dm3] 2L_11142447_SNP [dm6]	G	A	3.564e^-4	0.9	INTRON Gyc32E
2L	16242063	2L_16242063_SNP [dm3] 2L_16242063_SNP [dm6]	C	T	3.565e^-4	0.9	UTR_5_PRIME CG42818 DOWNSTREAM CG42817
2L	1645524	2L_1645524_SNP [dm3] 2L_1645524_SNP [dm6]	T	A	3.571e^-4	0.9	INTERGENIC
2L	15103789	2L_15103789_SNP [dm3] 2L_15103789_SNP [dm6]	C	T	3.574e^-4	0.9	INTERGENIC
3L	8998553	3L_8998553_SNP [dm3] 3L_9005453_SNP [dm6]	C	T	3.575e^-4	0.9	INTRON Doc3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21243643	3R_21243643_SNP [dm3] 3R_25417921_SNP [dm6]	G	A	3.575e^-4	0.9	INTRON Fur1
2L	3598856	2L_3598856_SNP [dm3] 2L_3598856_SNP [dm6]	A	G	3.586e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6907368	X_6907368_SNP [dm3] X_7013335_SNP [dm6]	C	T	3.587e^-4	0.9	SYNONYMOUS_CODING CG3032 UPSTREAM CG4593	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9093396	X_9093396_SNP [dm3] X_9199363_SNP [dm6]	G	A	3.588e^-4	0.9	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12575601	3R_12575601_SNP [dm3] 3R_16749879_SNP [dm6]	T	A	3.591e^-4	0.9	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13467278	3L_13467278_SNP [dm3] 3L_13474178_SNP [dm6]	T	A	3.605e^-4	0.9	INTRON CG10089
2L	10618864	2L_10618864_SNP [dm3] 2L_10618864_SNP [dm6]	C	A	3.605e^-4	0.9	INTRON Trim9
3L	9060245	3L_9060245_SNP [dm3] 3L_9067145_SNP [dm6]	T	A	3.606e^-4	0.9	DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	17842802	3L_17842802_SNP [dm3] 3L_17849702_SNP [dm6]	G	T	3.613e^-4	0.9	UPSTREAM CG7441 DOWNSTREAM CG7430 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12372143	3L_12372143_SNP [dm3] 3L_12379043_SNP [dm6]	C	T	3.620e^-4	0.9	INTRON Ncc69
2R	12580441	2R_12580441_SNP [dm3] 2R_16692936_SNP [dm6]	G	A	3.622e^-4	0.9	INTRON CG30463 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11430049	2L_11430049_SNP [dm3] 2L_11430049_SNP [dm6]	T	A	3.628e^-4	0.9	INTERGENIC
2L	16246545	2L_16246545_SNP [dm3] 2L_16246545_SNP [dm6]	G	T	3.636e^-4	0.9	UTR_3_PRIME PRL-1 DOWNSTREAM CG42818
3L	10573056	3L_10573056_SNP [dm3] 3L_10579956_SNP [dm6]	G	T	3.642e^-4	0.9	INTRON A2bp1
3R	6178936	3R_6178936_SNP [dm3] 3R_10353214_SNP [dm6]	A	G	3.648e^-4	0.9	INTRON jumu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16242779	2L_16242779_SNP [dm3] 2L_16242779_SNP [dm6]	A	G	3.649e^-4	0.9	SYNONYMOUS_CODING CG42818	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18215312	3L_18215312_INS [dm3] 3L_18222212_INS [dm6]	A	AGCG	3.654e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11538590	3R_11538590_SNP [dm3] 3R_15712868_SNP [dm6]	G	A	3.675e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	3.686e^-4	0.9	SYNONYMOUS_CODING CG6282
2R	12810346	2R_12810346_SNP [dm3] 2R_16922841_SNP [dm6]	G	T	3.690e^-4	0.9	INTERGENIC
2R	12138495	2R_12138495_SNP [dm3] 2R_16250990_SNP [dm6]	G	T	3.696e^-4	0.9	INTRON CngA
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	3.705e^-4	0.9	INTERGENIC
2L	13842794	2L_13842794_SNP [dm3] 2L_13842794_SNP [dm6]	C	T	3.706e^-4	0.9	DOWNSTREAM CG33306 INTRON CenG1A
3R	10668082	3R_10668082_SNP [dm3] 3R_14842360_SNP [dm6]	G	A	3.708e^-4	0.9	INTRON btsz
3R	24974642	3R_24974642_SNP [dm3] 3R_29148920_SNP [dm6]	A	G	3.710e^-4	0.9	UPSTREAM CG11882 DOWNSTREAM ligatin INTRON Pglym78	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13639793	3L_13639793_SNP [dm3] 3L_13646693_SNP [dm6]	C	T	3.712e^-4	0.9	INTRON bru-3
X	5996719	X_5996719_SNP [dm3] X_6102686_SNP [dm6]	G	A	3.713e^-4	0.9	INTRON Nep1	TF binding site mE1_TFBS_chinmo
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	3.725e^-4	0.9	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15100070	2L_15100070_DEL [dm3] 2L_15100070_DEL [dm6]	GTGGCCTTTCAG...	G	3.726e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15100083	2L_15100083_SNP [dm3] 2L_15100083_SNP [dm6]	A	C	3.726e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17066871	3R_17066871_SNP [dm3] 3R_21241149_SNP [dm6]	A	G	3.726e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2L	11430043	2L_11430043_SNP [dm3] 2L_11430043_SNP [dm6]	T	C	3.728e^-4	0.9	INTERGENIC
3L	18191886	3L_18191886_SNP [dm3] 3L_18198786_SNP [dm6]	C	G	3.733e^-4	0.9	INTERGENIC
3L	19423712	3L_19423712_INS [dm3] 3L_19430612_INS [dm6]	T	TTCAGGACTATTCAA...	3.733e^-4	0.9	INTERGENIC
2L	13841512	2L_13841512_SNP [dm3] 2L_13841512_SNP [dm6]	T	G	3.734e^-4	0.9	UTR_5_PRIME CG33307 INTRON CenG1A
3R	14144814	3R_14144814_INS [dm3] 3R_18319092_INS [dm6]	A	AG	3.742e^-4	0.9	INTRON CG31235
3R	14144817	3R_14144817_INS [dm3] 3R_18319095_INS [dm6]	A	ATGT	3.742e^-4	0.9	INTRON CG31235
X	18886800	X_18886800_SNP [dm3] X_18992767_SNP [dm6]	T	C	3.742e^-4	0.9	INTRON CG43759
3L	11178271	3L_11178271_SNP [dm3] 3L_11185171_SNP [dm6]	A	T	3.743e^-4	0.9	INTRON GlcAT-P
2R	17066226	2R_17066226_SNP [dm3] 2R_21178721_SNP [dm6]	C	T	3.752e^-4	0.9	UPSTREAM Pu & 1 other INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7107039	2L_7107039_SNP [dm3] 2L_7107039_SNP [dm6]	C	T	3.755e^-4	0.9	INTRON Pvf3
2L	13996052	2L_13996052_SNP [dm3] 2L_13996052_SNP [dm6]	T	A	3.761e^-4	0.9	INTRON rk
3R	8799967	3R_8799967_SNP [dm3] 3R_12974245_SNP [dm6]	C	T	3.761e^-4	0.9	INTRON CG7381
2R	3576606	2R_3576606_SNP [dm3] 2R_7689101_SNP [dm6]	A	T	3.766e^-4	0.9	INTRON CG1399
2L	1303587	2L_1303587_SNP [dm3] 2L_1303587_SNP [dm6]	G	A	3.769e^-4	0.9	INTERGENIC
X	12582538	X_12582538_INS [dm3] X_12688505_INS [dm6]	G	GTTGCTG	3.774e^-4	0.9	CODON_INSERTION Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8039336	3L_8039336_SNP [dm3] 3L_8046236_SNP [dm6]	T	C	3.777e^-4	0.9	INTRON nmo
X	19545957	X_19545957_SNP [dm3] X_19651924_SNP [dm6]	C	T	3.778e^-4	0.9	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12186539	3L_12186539_SNP [dm3] 3L_12193439_SNP [dm6]	C	T	3.782e^-4	0.9	SPLICE_SITE_REGION thoc6 DOWNSTREAM Est-P INTRON thoc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
2L	17705832	2L_17705832_SNP [dm3] 2L_17705832_SNP [dm6]	G	A	3.793e^-4	0.9	SPLICE_SITE_REGION CG43231 UTR_3_PRIME CG43231 INTRON CadN
3L	1549491	3L_1549491_SNP [dm3] 3L_1549491_SNP [dm6]	G	T	3.795e^-4	0.9	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	1277380	3L_1277380_SNP [dm3] 3L_1277380_SNP [dm6]	C	G	3.798e^-4	0.9	INTRON CG32333
3R	8871184	3R_8871184_SNP [dm3] 3R_13045462_SNP [dm6]	A	T	3.801e^-4	0.9	DOWNSTREAM CG45122 INTRON Hsc70-2
3R	17066909	3R_17066909_SNP [dm3] 3R_21241187_SNP [dm6]	G	A	3.801e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2L	18631758	2L_18631758_SNP [dm3] 2L_18631758_SNP [dm6]	T	C	3.803e^-4	0.9	UTR_5_PRIME MESR3 INTRON MESR3
2L	11346628	2L_11346628_SNP [dm3] 2L_11346628_SNP [dm6]	A	G	3.805e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	3.813e^-4	0.9	INTRON CG32791
3R	8116880	3R_8116880_SNP [dm3] 3R_12291158_SNP [dm6]	G	C	3.818e^-4	0.9	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	8559802	3R_8559802_SNP [dm3] 3R_12734080_SNP [dm6]	C	A	3.824e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23468356	3R_23468356_SNP [dm3] 3R_27642634_SNP [dm6]	A	T	3.830e^-4	0.9	UPSTREAM mir-1001 INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14300395	2L_14300395_SNP [dm3] 2L_14300395_SNP [dm6]	G	T	3.831e^-4	0.9	UPSTREAM wb INTRON wb
3R	7952376	3R_7952376_SNP [dm3] 3R_12126654_SNP [dm6]	A	G	3.842e^-4	0.9	INTRON CG4702
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	3.844e^-4	0.9	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14032545	2L_14032545_SNP [dm3] 2L_14032545_SNP [dm6]	G	T	3.847e^-4	0.9	EXON CR45284
2L	14392843	2L_14392843_SNP [dm3] 2L_14392843_SNP [dm6]	T	C	3.853e^-4	0.9	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4910823	2L_4910823_SNP [dm3] 2L_4910823_SNP [dm6]	A	G	3.855e^-4	0.9	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7107144	2L_7107144_SNP [dm3] 2L_7107144_SNP [dm6]	G	A	3.856e^-4	0.9	SYNONYMOUS_CODING Pvf3
3R	16473173	3R_16473173_SNP [dm3] 3R_20647451_SNP [dm6]	G	A	3.857e^-4	0.9	SYNONYMOUS_CODING GluRIIE
3R	14144819	3R_14144819_SNP [dm3] 3R_18319097_SNP [dm6]	T	C	3.864e^-4	0.9	INTRON CG31235
2L	7507380	2L_7507380_SNP [dm3] 2L_7507380_SNP [dm6]	C	T	3.865e^-4	0.9	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	3095129	2L_3095129_SNP [dm3] 2L_3095129_SNP [dm6]	T	G	3.871e^-4	0.9	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9622336	2L_9622336_SNP [dm3] 2L_9622336_SNP [dm6]	C	T	3.872e^-4	0.9	INTRON GlcAT-S
2L	16191870	2L_16191870_DEL [dm3] 2L_16191870_DEL [dm6]	TT	T	3.874e^-4	0.9	INTERGENIC
2L	5079148	2L_5079148_SNP [dm3] 2L_5079148_SNP [dm6]	G	T	3.888e^-4	0.9	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11390883	2L_11390883_SNP [dm3] 2L_11390883_SNP [dm6]	T	C	3.893e^-4	0.9	EXON CR43681	regulatory region REDfly_CRMs
3L	15689148	3L_15689148_SNP [dm3] 3L_15696048_SNP [dm6]	T	C	3.898e^-4	0.9	INTERGENIC
2R	8331587	2R_8331587_SNP [dm3] 2R_12444082_SNP [dm6]	C	A	3.904e^-4	0.9	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11390868	2L_11390868_SNP [dm3] 2L_11390868_SNP [dm6]	C	G	3.910e^-4	0.9	EXON CR43681	regulatory region REDfly_CRMs
X	10205780	X_10205780_DEL [dm3] X_10311747_DEL [dm6]	TTACGTTA	T	3.910e^-4	0.9	INTRON alpha-Man-I
3R	10137715	3R_10137715_SNP [dm3] 3R_14311993_SNP [dm6]	G	A	3.925e^-4	0.9	INTRON CG31321	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2309558	2L_2309558_SNP [dm3] 2L_2309558_SNP [dm6]	C	G	3.925e^-4	0.9	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
3L	14330647	3L_14330647_SNP [dm3] 3L_14337547_SNP [dm6]	A	G	3.933e^-4	0.9	INTRON fz
2L	15103795	2L_15103795_SNP [dm3] 2L_15103795_SNP [dm6]	C	T	3.942e^-4	0.9	INTERGENIC
2R	12793054	2R_12793054_INS [dm3] 2R_16905549_INS [dm6]	T	TT	3.948e^-4	0.9	INTERGENIC
2L	2846181	2L_2846181_SNP [dm3] 2L_2846181_SNP [dm6]	G	C	3.953e^-4	0.9	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
3R	13081797	3R_13081797_SNP [dm3] 3R_17256075_SNP [dm6]	C	T	3.963e^-4	0.9	INTRON beat-IIb
3L	17462973	3L_17462973_SNP [dm3] 3L_17469873_SNP [dm6]	T	C	3.972e^-4	0.9	UPSTREAM CG7589 INTERGENIC
2L	15103796	2L_15103796_SNP [dm3] 2L_15103796_SNP [dm6]	G	A	3.976e^-4	0.9	INTERGENIC
2R	11886286	2R_11886286_SNP [dm3] 2R_15998781_SNP [dm6]	A	C	3.977e^-4	0.9	INTRON ATPCL
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	3.979e^-4	0.9	INTRON beat-Vc
X	16782494	X_16782494_SNP [dm3] X_16888461_SNP [dm6]	A	G	3.982e^-4	0.9	UTR_3_PRIME CG4880 DOWNSTREAM CR43768
3L	1597464	3L_1597464_SNP [dm3] 3L_1597464_SNP [dm6]	G	C	3.986e^-4	0.9	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13602012	3R_13602012_SNP [dm3] 3R_17776290_SNP [dm6]	G	C	3.996e^-4	0.9	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	4.000e^-4	0.9	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
2L	4910736	2L_4910736_SNP [dm3] 2L_4910736_SNP [dm6]	C	T	4.002e^-4	0.9	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16427431	2R_16427431_SNP [dm3] 2R_20539926_SNP [dm6]	A	T	4.005e^-4	0.9	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10794090	2L_10794090_SNP [dm3] 2L_10794090_SNP [dm6]	A	G	4.006e^-4	0.9	INTRON CG31869
3R	14144858	3R_14144858_SNP [dm3] 3R_18319136_SNP [dm6]	G	A	4.007e^-4	0.9	INTRON CG31235
2R	1243712	2R_1243712_SNP [dm3] 2R_5356207_SNP [dm6]	C	A	4.008e^-4	0.9	INTERGENIC
3L	14054659	3L_14054659_INS [dm3] 3L_14061559_INS [dm6]	T	TT	4.010e^-4	0.9	INTRON CG32138
2R	10946644	2R_10946644_SNP [dm3] 2R_15059139_SNP [dm6]	A	C	4.013e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_sens
3L	5699771	3L_5699771_SNP [dm3] 3L_5706671_SNP [dm6]	C	G	4.016e^-4	0.9	INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	923964	3L_923964_SNP [dm3] 3L_923964_SNP [dm6]	G	A	4.019e^-4	0.9	INTRON Glut1
2L	8219310	2L_8219310_SNP [dm3] 2L_8219310_SNP [dm6]	C	G	4.020e^-4	0.9	INTRON Snx6
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	4.026e^-4	0.9	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	21249708	3R_21249708_SNP [dm3] 3R_25423986_SNP [dm6]	A	T	4.028e^-4	0.9	INTRON Fur1
2L	12298948	2L_12298948_SNP [dm3] 2L_12298948_SNP [dm6]	C	T	4.030e^-4	0.9	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8883120	3R_8883120_SNP [dm3] 3R_13057398_SNP [dm6]	G	T	4.034e^-4	0.9	UPSTREAM sim DOWNSTREAM pic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11017614	2R_11017614_SNP [dm3] 2R_15130109_SNP [dm6]	A	C	4.034e^-4	0.9	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	17065670	2R_17065670_SNP [dm3] 2R_21178165_SNP [dm6]	C	T	4.035e^-4	0.9	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1396361	2L_1396361_SNP [dm3] 2L_1396361_SNP [dm6]	T	C	4.038e^-4	0.9	INTRON lea	TF binding site BDTNP1_TFBS_da
2L	13415200	2L_13415200_SNP [dm3] 2L_13415200_SNP [dm6]	C	T	4.038e^-4	0.9	UPSTREAM CG42784 & 2 others INTERGENIC
3L	16286781	3L_16286781_SNP [dm3] 3L_16293681_SNP [dm6]	C	T	4.040e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12172406	2L_12172406_SNP [dm3] 2L_12172406_SNP [dm6]	G	A	4.042e^-4	0.9	UPSTREAM crok INTRON CG6583
2L	11430053	2L_11430053_SNP [dm3] 2L_11430053_SNP [dm6]	T	A	4.045e^-4	0.9	INTERGENIC
2L	1359739	2L_1359739_SNP [dm3] 2L_1359739_SNP [dm6]	G	A	4.065e^-4	0.9	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
3L	11183481	3L_11183481_SNP [dm3] 3L_11190381_SNP [dm6]	G	T	4.065e^-4	0.9	INTRON GlcAT-P
2L	7077576	2L_7077576_SNP [dm3] 2L_7077576_SNP [dm6]	T	C	4.068e^-4	0.9	INTRON Pvf2
X	19545968	X_19545968_SNP [dm3] X_19651935_SNP [dm6]	T	C	4.076e^-4	0.9	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15466127	2L_15466127_SNP [dm3] 2L_15466127_SNP [dm6]	A	T	4.077e^-4	0.9	INTERGENIC
3L	13342787	3L_13342787_SNP [dm3] 3L_13349687_SNP [dm6]	T	C	4.082e^-4	0.9	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14860552	3R_14860552_SNP [dm3] 3R_19034830_SNP [dm6]	C	T	4.090e^-4	0.9	INTRON CG6026
3L	12490237	3L_12490237_SNP [dm3] 3L_12497137_SNP [dm6]	G	A	4.099e^-4	0.9	UTR_5_PRIME CG10657 DOWNSTREAM CG10638
3R	14145235	3R_14145235_SNP [dm3] 3R_18319513_SNP [dm6]	C	T	4.102e^-4	0.9	INTRON CG31235
3R	4213757	3R_4213757_SNP [dm3] 3R_8388035_SNP [dm6]	A	G	4.103e^-4	0.9	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13056839	2R_13056839_SNP [dm3] 2R_17169334_SNP [dm6]	T	A	4.106e^-4	0.9	INTERGENIC
X	11844948	X_11844948_SNP [dm3] X_11950915_SNP [dm6]	C	G	4.114e^-4	0.9	INTRON cac
2R	11081455	2R_11081455_SNP [dm3] 2R_15193950_SNP [dm6]	G	A	4.118e^-4	0.9	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3R	9828891	3R_9828891_SNP [dm3] 3R_14003169_SNP [dm6]	A	C	4.124e^-4	0.9	INTRON rdx
3L	5645530	3L_5645530_SNP [dm3] 3L_5652430_SNP [dm6]	T	C	4.126e^-4	0.9	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	4.128e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15103798	2L_15103798_SNP [dm3] 2L_15103798_SNP [dm6]	T	G	4.129e^-4	0.9	INTERGENIC
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	4.133e^-4	0.9	DOWNSTREAM CR45543 INTERGENIC
3R	6514731	3R_6514731_SNP [dm3] 3R_10689009_SNP [dm6]	C	G	4.140e^-4	0.9	INTRON Skeletor
2R	15365766	2R_15365766_SNP [dm3] 2R_19478261_SNP [dm6]	G	C	4.145e^-4	0.9	INTRON par-1
2L	8372116	2L_8372116_SNP [dm3] 2L_8372116_SNP [dm6]	A	G	4.153e^-4	0.9	UPSTREAM CG17292 INTRON CG17292
2R	19794807	2R_19794807_SNP [dm3] 2R_23907284_SNP [dm6]	G	A	4.157e^-4	0.9	UTR_5_PRIME Nap1 UPSTREAM kcc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12307289	2L_12307289_DEL [dm3] 2L_12307289_DEL [dm6]	ATCAAATGACGACAGC...	A	4.157e^-4	0.9	INTRON aret
3L	18141255	3L_18141255_SNP [dm3] 3L_18148155_SNP [dm6]	A	G	4.172e^-4	0.9	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13371657	2L_13371657_SNP [dm3] 2L_13371657_SNP [dm6]	A	G	4.172e^-4	0.9	SYNONYMOUS_CODING CG9305 UPSTREAM CG9306	TF binding site mE1_TFBS_cad
3L	4169193	3L_4169193_DEL [dm3] 3L_4169193_DEL [dm6]	AAA	G	4.177e^-4	0.9	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4169198	3L_4169198_SNP [dm3] 3L_4169198_SNP [dm6]	G	A	4.177e^-4	0.9	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4169203	3L_4169203_SNP [dm3] 3L_4169203_SNP [dm6]	A	G	4.177e^-4	0.9	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	5038366	2R_5038366_SNP [dm3] 2R_9150861_SNP [dm6]	C	G	4.189e^-4	0.9	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
3L	10294498	3L_10294498_SNP [dm3] 3L_10301398_SNP [dm6]	G	A	4.191e^-4	0.9	INTERGENIC
2L	15139302	2L_15139302_SNP [dm3] 2L_15139302_SNP [dm6]	T	A	4.192e^-4	0.9	INTERGENIC
X	14548091	X_14548091_SNP [dm3] X_14654058_SNP [dm6]	T	C	4.202e^-4	0.9	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	1296871	2L_1296871_DEL [dm3] 2L_1296871_DEL [dm6]	GAC	G	4.203e^-4	0.9	DOWNSTREAM robo3 INTERGENIC
3L	11019980	3L_11019980_SNP [dm3] 3L_11026880_SNP [dm6]	G	T	4.204e^-4	0.9	UPSTREAM CG32081 INTRON CG32079
X	14545734	X_14545734_SNP [dm3] X_14651701_SNP [dm6]	G	A	4.207e^-4	0.9	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	4.218e^-4	0.9	SPLICE_SITE_REGION CG6293 INTRON CG6293
2R	16581856	2R_16581856_SNP [dm3] 2R_20694351_SNP [dm6]	C	G	4.219e^-4	0.9	DOWNSTREAM CG13438 INTERGENIC
3R	6216385	3R_6216385_SNP [dm3] 3R_10390663_SNP [dm6]	G	A	4.225e^-4	0.9	INTRON cwo
2L	16539340	2L_16539340_SNP [dm3] 2L_16539340_SNP [dm6]	G	C	4.231e^-4	0.9	INTERGENIC
3R	11812354	3R_11812354_SNP [dm3] 3R_15986632_SNP [dm6]	T	C	4.231e^-4	0.9	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17019097	X_17019097_SNP [dm3] X_17125064_SNP [dm6]	A	T	4.234e^-4	0.9	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	18220392	3L_18220392_SNP [dm3] 3L_18227292_SNP [dm6]	C	T	4.236e^-4	0.9	INTERGENIC
3R	15151190	3R_15151190_SNP [dm3] 3R_19325468_SNP [dm6]	G	C	4.253e^-4	0.9	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13600683	3R_13600683_SNP [dm3] 3R_17774961_SNP [dm6]	C	A	4.259e^-4	0.9	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10727227	3L_10727227_SNP [dm3] 3L_10734127_SNP [dm6]	T	C	4.261e^-4	0.9	INTERGENIC
3L	13464062	3L_13464062_SNP [dm3] 3L_13470962_SNP [dm6]	C	T	4.262e^-4	0.9	INTRON CG10089	TF binding site mE1_TFBS_cad
3L	16260801	3L_16260801_SNP [dm3] 3L_16267701_SNP [dm6]	C	T	4.268e^-4	0.9	SYNONYMOUS_CODING CG4950	TF binding site mE1_TFBS_sens
X	3428959	X_3428959_SNP [dm3] X_3534926_SNP [dm6]	A	G	4.285e^-4	0.9	INTRON CG32791	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17019129	X_17019129_DEL [dm3] X_17125096_DEL [dm6]	CA	T	4.286e^-4	0.9	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	12210804	2L_12210804_SNP [dm3] 2L_12210804_SNP [dm6]	G	A	4.299e^-4	0.9	DOWNSTREAM CG31759 INTRON aret
X	14545736	X_14545736_SNP [dm3] X_14651703_SNP [dm6]	C	T	4.303e^-4	0.9	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12426632	2L_12426632_SNP [dm3] 2L_12426632_SNP [dm6]	A	G	4.312e^-4	0.9	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
2R	15129389	2R_15129389_SNP [dm3] 2R_19241884_SNP [dm6]	G	C	4.317e^-4	0.9	INTRON cora	TF binding site mE1_TFBS_cad
2R	15129396	2R_15129396_SNP [dm3] 2R_19241891_SNP [dm6]	A	T	4.317e^-4	0.9	INTRON cora	TF binding site mE1_TFBS_cad
3L	12425000	3L_12425000_SNP [dm3] 3L_12431900_SNP [dm6]	A	G	4.319e^-4	0.9	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	13996631	X_13996631_SNP [dm3] X_14102598_SNP [dm6]	A	C	4.319e^-4	0.9	DOWNSTREAM tRNA:S4:12Ee INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13842407	2L_13842407_SNP [dm3] 2L_13842407_SNP [dm6]	G	A	4.320e^-4	0.9	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	21244230	3R_21244230_SNP [dm3] 3R_25418508_SNP [dm6]	T	A	4.321e^-4	0.9	INTRON Fur1
2L	3387995	2L_3387995_SNP [dm3] 2L_3387995_SNP [dm6]	A	T	4.322e^-4	0.9	UTR_3_PRIME CG42460 UPSTREAM CR45301 & 1 other DOWNSTREAM CG42460
2L	8947745	2L_8947745_DEL [dm3] 2L_8947745_DEL [dm6]	GC	G	4.323e^-4	0.9	INTRON C1GalTA
2R	4419515	2R_4419515_SNP [dm3] 2R_8532010_SNP [dm6]	T	G	4.332e^-4	0.9	UTR_5_PRIME mtt
3L	17815507	3L_17815507_SNP [dm3] 3L_17822407_SNP [dm6]	A	T	4.334e^-4	0.9	UPSTREAM Grd INTRON Ir75c
3L	18141247	3L_18141247_SNP [dm3] 3L_18148147_SNP [dm6]	A	C	4.335e^-4	0.9	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4917163	2L_4917163_SNP [dm3] 2L_4917163_SNP [dm6]	T	A	4.340e^-4	0.9	INTRON hoe1
3L	18881979	3L_18881979_SNP [dm3] 3L_18888879_SNP [dm6]	A	T	4.342e^-4	0.9	INTRON CG3961
3R	4176716	3R_4176716_SNP [dm3] 3R_8350994_SNP [dm6]	C	A	4.364e^-4	0.9	SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
3L	8554226	3L_8554226_INS [dm3] 3L_8561126_INS [dm6]	T	TT	4.366e^-4	0.9	INTRON rhea
3R	25987702	3R_25987702_SNP [dm3] 3R_30161980_SNP [dm6]	G	A	4.367e^-4	0.9	INTERGENIC
X	9490803	X_9490803_SNP [dm3] X_9596770_SNP [dm6]	T	A	4.373e^-4	0.9	INTERGENIC
3R	6228184	3R_6228184_SNP [dm3] 3R_10402462_SNP [dm6]	C	T	4.374e^-4	0.9	SYNONYMOUS_CODING mthl11 DOWNSTREAM CG6325
3R	12710821	3R_12710821_SNP [dm3] 3R_16885099_SNP [dm6]	T	G	4.388e^-4	0.9	INTRON iab-8
3L	13466532	3L_13466532_INS [dm3] 3L_13473432_INS [dm6]	T	TA	4.397e^-4	0.9	INTRON CG10089
3R	8864715	3R_8864715_SNP [dm3] 3R_13038993_SNP [dm6]	G	C	4.402e^-4	0.9	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
3R	10668376	3R_10668376_SNP [dm3] 3R_14842654_SNP [dm6]	T	C	4.404e^-4	0.9	INTRON btsz
3R	19993068	3R_19993068_SNP [dm3] 3R_24167346_SNP [dm6]	G	A	4.406e^-4	0.9	SYNONYMOUS_CODING Apc2 DOWNSTREAM CG5510
3R	8151411	3R_8151411_SNP [dm3] 3R_12325689_SNP [dm6]	A	G	4.414e^-4	0.9	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	21891595	X_21891595_SNP [dm3] X_22489759_SNP [dm6]	T	C	4.424e^-4	0.9	INTRON l_1_G0196 EXON CR43493
2R	10888108	2R_10888108_SNP [dm3] 2R_15000603_SNP [dm6]	T	A	4.438e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23259093	3R_23259093_SNP [dm3] 3R_27433371_SNP [dm6]	T	A	4.443e^-4	0.9	INTRON side
X	6908540	X_6908540_SNP [dm3] X_7014507_SNP [dm6]	T	G	4.445e^-4	0.9	SYNONYMOUS_CODING CG4593 UPSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17100227	2R_17100227_SNP [dm3] 2R_21212722_SNP [dm6]	G	A	4.451e^-4	0.9	UTR_3_PRIME CG44245 DOWNSTREAM CG4302
2L	13565872	2L_13565872_INS [dm3] 2L_13565872_INS [dm6]	T	TT	4.455e^-4	0.9	INTRON kuz
X	16722191	X_16722191_SNP [dm3] X_16828158_SNP [dm6]	C	A	4.458e^-4	0.9	UPSTREAM CG13004 INTRON CG13004
3R	6921095	3R_6921095_SNP [dm3] 3R_11095373_SNP [dm6]	G	A	4.460e^-4	0.9	INTERGENIC
2R	10842356	2R_10842356_SNP [dm3] 2R_14954851_SNP [dm6]	C	G	4.461e^-4	0.9	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10842360	2R_10842360_SNP [dm3] 2R_14954855_SNP [dm6]	A	C	4.461e^-4	0.9	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6078901	2R_6078901_SNP [dm3] 2R_10191396_SNP [dm6]	C	T	4.461e^-4	0.9	INTRON KCNQ
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	4.461e^-4	0.9	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	15103804	2L_15103804_SNP [dm3] 2L_15103804_SNP [dm6]	C	T	4.470e^-4	0.9	INTERGENIC
2L	15103807	2L_15103807_SNP [dm3] 2L_15103807_SNP [dm6]	G	A	4.470e^-4	0.9	INTERGENIC
3R	6137504	3R_6137504_SNP [dm3] 3R_10311782_SNP [dm6]	G	A	4.474e^-4	0.9	UPSTREAM CG6293 DOWNSTREAM Bruce INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7255605	3L_7255605_SNP [dm3] 3L_7262505_SNP [dm6]	A	C	4.475e^-4	0.9	INTRON CG14830
3R	10668100	3R_10668100_SNP [dm3] 3R_14842378_SNP [dm6]	T	A	4.475e^-4	0.9	INTRON btsz
3R	25967071	3R_25967071_INS [dm3] 3R_30141349_INS [dm6]	A	AC	4.477e^-4	0.9	INTRON AdoR	TF binding site mE1_TFBS_chinmo
2L	16164674	2L_16164674_SNP [dm3] 2L_16164674_SNP [dm6]	C	T	4.481e^-4	0.9	INTERGENIC
2L	12982242	2L_12982242_SNP [dm3] 2L_12982242_SNP [dm6]	T	G	4.483e^-4	0.9	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1604628	2L_1604628_SNP [dm3] 2L_1604628_SNP [dm6]	C	T	4.485e^-4	0.9	INTRON CG31935 & 1 other
2L	5294901	2L_5294901_SNP [dm3] 2L_5294901_SNP [dm6]	T	C	4.501e^-4	0.9	INTRON vri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	4.502e^-4	0.9	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16541067	3L_16541067_SNP [dm3] 3L_16547967_SNP [dm6]	A	T	4.504e^-4	0.9	INTERGENIC
2L	10920553	2L_10920553_SNP [dm3] 2L_10920553_SNP [dm6]	A	G	4.504e^-4	0.9	INTRON dpr2
3L	18117526	3L_18117526_SNP [dm3] 3L_18124426_SNP [dm6]	A	C	4.517e^-4	0.9	INTERGENIC
X	10205779	X_10205779_INS [dm3] X_10311746_INS [dm6]	G	GATGTGCA	4.526e^-4	0.9	INTRON alpha-Man-I
3L	4167929	3L_4167929_SNP [dm3] 3L_4167929_SNP [dm6]	C	A	4.528e^-4	0.9	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	14419019	X_14419019_SNP [dm3] X_14524986_SNP [dm6]	A	T	4.529e^-4	0.9	INTERGENIC
3R	19446942	3R_19446942_SNP [dm3] 3R_23621220_SNP [dm6]	C	A	4.535e^-4	0.9	INTRON CG31145
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	4.552e^-4	0.9	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14352202	3L_14352202_SNP [dm3] 3L_14359102_SNP [dm6]	T	A	4.556e^-4	0.9	INTRON fz
3R	12651073	3R_12651073_SNP [dm3] 3R_16825351_SNP [dm6]	C	T	4.558e^-4	0.9	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	15227105	X_15227105_SNP [dm3] X_15333072_SNP [dm6]	A	G	4.566e^-4	0.9	START_GAINED CG9114 UTR_5_PRIME CG9114 UPSTREAM HDAC6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19325159	3R_19325159_SNP [dm3] 3R_23499437_SNP [dm6]	G	A	4.570e^-4	0.9	INTERGENIC
3L	17147112	3L_17147112_SNP [dm3] 3L_17154012_SNP [dm6]	A	T	4.576e^-4	0.9	INTRON Rbp6
2L	7471414	2L_7471414_SNP [dm3] 2L_7471414_SNP [dm6]	A	T	4.582e^-4	0.9	UTR_5_PRIME CG6055 INTRON CG6055
3R	17772912	3R_17772912_SNP [dm3] 3R_21947190_SNP [dm6]	T	G	4.588e^-4	0.9	INTERGENIC
2L	15433059	2L_15433059_SNP [dm3] 2L_15433059_SNP [dm6]	T	C	4.592e^-4	0.9	UPSTREAM CG4161 INTERGENIC
2R	8612657	2R_8612657_SNP [dm3] 2R_12725152_SNP [dm6]	A	G	4.597e^-4	0.9	INTRON CG42663
2L	4929825	2L_4929825_SNP [dm3] 2L_4929825_SNP [dm6]	C	A	4.597e^-4	0.9	INTRON hoe1
3L	9989709	3L_9989709_SNP [dm3] 3L_9996609_SNP [dm6]	T	G	4.598e^-4	0.9	INTRON dpr6
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	4.599e^-4	0.9	UPSTREAM CG3306 & 1 other INTERGENIC
3L	18093340	3L_18093340_SNP [dm3] 3L_18100240_SNP [dm6]	C	A	4.600e^-4	0.9	INTRON CG13698
3L	17610370	3L_17610370_SNP [dm3] 3L_17617270_SNP [dm6]	C	G	4.626e^-4	0.9	INTRON Eip74EF
3L	9594662	3L_9594662_SNP [dm3] 3L_9601562_SNP [dm6]	T	C	4.637e^-4	0.9	START_GAINED CG3306 UTR_5_PRIME CG3306 UPSTREAM CG3088
3L	17410419	3L_17410419_SNP [dm3] 3L_17417319_SNP [dm6]	T	C	4.637e^-4	0.9	INTRON blot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1072326	2R_1072326_INS [dm3] 2R_5184821_INS [dm6]	T	TT	4.658e^-4	0.9	INTRON Nipped-A
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	4.659e^-4	0.9	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3L	4169275	3L_4169275_SNP [dm3] 3L_4169275_SNP [dm6]	C	A	4.662e^-4	0.9	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4169631	3L_4169631_DEL [dm3] 3L_4169631_DEL [dm6]	AGG	A	4.662e^-4	0.9	UPSTREAM CR44529 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr
3L	4170377	3L_4170377_SNP [dm3] 3L_4170377_SNP [dm6]	G	A	4.662e^-4	0.9	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2165423	2L_2165423_SNP [dm3] 2L_2165423_SNP [dm6]	T	C	4.668e^-4	0.9	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	14144892	3R_14144892_SNP [dm3] 3R_18319170_SNP [dm6]	C	G	4.678e^-4	0.9	INTRON CG31235
3R	14144913	3R_14144913_SNP [dm3] 3R_18319191_SNP [dm6]	G	C	4.679e^-4	0.9	INTRON CG31235
2L	11417675	2L_11417675_SNP [dm3] 2L_11417675_SNP [dm6]	T	G	4.680e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9881019	2R_9881019_SNP [dm3] 2R_13993514_SNP [dm6]	G	A	4.685e^-4	0.9	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6291710	3L_6291710_SNP [dm3] 3L_6298610_SNP [dm6]	C	T	4.689e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10896346	2R_10896346_DEL [dm3] 2R_15008841_DEL [dm6]	AA	A	4.695e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11807485	2R_11807485_INS [dm3] 2R_15919980_INS [dm6]	T	TATATAAGGAAT...	4.701e^-4	0.9	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17067275	3R_17067275_SNP [dm3] 3R_21241553_SNP [dm6]	C	T	4.705e^-4	0.9	INTERGENIC	regulatory region REDfly_CRMs
2R	11006279	2R_11006279_SNP [dm3] 2R_15118774_SNP [dm6]	T	C	4.708e^-4	0.9	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23468357	3R_23468357_SNP [dm3] 3R_27642635_SNP [dm6]	C	T	4.713e^-4	0.9	UPSTREAM mir-1001 INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18175454	2R_18175454_INS [dm3] 2R_22287949_INS [dm6]	T	TT	4.725e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3291815	2R_3291815_SNP [dm3] 2R_7404310_SNP [dm6]	T	G	4.734e^-4	0.9	NON_SYNONYMOUS_CODING CG43267 DOWNSTREAM CG43123 INTRON Eaf
2L	5816946	2L_5816946_SNP [dm3] 2L_5816946_SNP [dm6]	A	T	4.743e^-4	0.9	DOWNSTREAM CG31644 INTERGENIC
2R	7073663	2R_7073663_INS [dm3] 2R_11186158_INS [dm6]	A	ACA	4.746e^-4	0.9	INTRON shn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	6291088	3R_6291088_SNP [dm3] 3R_10465366_SNP [dm6]	G	A	4.760e^-4	0.9	UPSTREAM CR44955 INTERGENIC
3R	13989734	3R_13989734_SNP [dm3] 3R_18164012_SNP [dm6]	C	A	4.761e^-4	0.9	UPSTREAM Cbp20 INTRON CG7218	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	27099425	3R_27099425_SNP [dm3] 3R_31273703_SNP [dm6]	T	C	4.765e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15150931	3R_15150931_SNP [dm3] 3R_19325209_SNP [dm6]	G	A	4.777e^-4	0.9	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10138838	3R_10138838_SNP [dm3] 3R_14313116_SNP [dm6]	A	C	4.781e^-4	0.9	INTRON CG31321
2L	12312321	2L_12312321_SNP [dm3] 2L_12312321_SNP [dm6]	G	A	4.784e^-4	0.9	DOWNSTREAM aret INTRON aret
2L	9665108	2L_9665108_SNP [dm3] 2L_9665108_SNP [dm6]	C	A	4.789e^-4	0.9	INTERGENIC
3L	4170647	3L_4170647_DEL [dm3] 3L_4170647_DEL [dm6]	AC	A	4.792e^-4	0.9	UTR_5_PRIME Ero1L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13252612	2L_13252612_SNP [dm3] 2L_13252612_SNP [dm6]	G	A	4.801e^-4	0.9	INTRON CG31728
X	12731356	X_12731356_SNP [dm3] X_12837323_SNP [dm6]	T	C	4.801e^-4	0.9	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	4.803e^-4	0.9	UPSTREAM CG3306 & 1 other INTERGENIC
3L	5701147	3L_5701147_SNP [dm3] 3L_5708047_SNP [dm6]	A	G	4.811e^-4	0.9	INTRON sif
2L	11768688	2L_11768688_SNP [dm3] 2L_11768688_SNP [dm6]	T	C	4.812e^-4	0.9	INTERGENIC
2R	10937336	2R_10937336_SNP [dm3] 2R_15049831_SNP [dm6]	T	C	4.815e^-4	0.9	EXON CR43622	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11821976	3L_11821976_SNP [dm3] 3L_11828876_SNP [dm6]	G	T	4.815e^-4	0.9	UPSTREAM CG7264 INTRON CycA
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	4.818e^-4	0.9	INTRON CG34355
3L	14384188	3L_14384188_DEL [dm3] 3L_14391088_DEL [dm6]	ATAATTCT	A	4.824e^-4	0.9	INTERGENIC
3L	16821030	3L_16821030_SNP [dm3] 3L_16827930_SNP [dm6]	A	G	4.828e^-4	0.9	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14545712	X_14545712_SNP [dm3] X_14651679_SNP [dm6]	C	T	4.828e^-4	0.9	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13368067	3R_13368067_SNP [dm3] 3R_17542345_SNP [dm6]	A	G	4.837e^-4	0.9	INTRON SF1
2L	3390262	2L_3390262_SNP [dm3] 2L_3390262_SNP [dm6]	C	T	4.843e^-4	0.9	DOWNSTREAM CR44791 INTERGENIC
3R	23887934	3R_23887934_SNP [dm3] 3R_28062212_SNP [dm6]	T	G	4.853e^-4	0.9	INTRON CG34362
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	4.865e^-4	0.9	INTRON NaPi-T
X	8970202	X_8970202_SNP [dm3] X_9076169_SNP [dm6]	G	T	4.876e^-4	0.9	INTRON CG44325
2L	16237157	2L_16237157_SNP [dm3] 2L_16237157_SNP [dm6]	A	G	4.887e^-4	0.9	SYNONYMOUS_CODING CG42817

Missing results

By genomic position
Variant impact
Gene name

Cuticul_3_Me_C23_C24 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results