DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.658e^-17)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03296

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	10.6641	0.0048

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2637 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18200328	2R_18200328_DEL [dm3] 2R_22312823_DEL [dm6]	TCGCACTCGCCTTGTTTGTT...	T	4.317e^-7	0.319	UPSTREAM CR44758 & 1 other INTERGENIC
3L	7307474	3L_7307474_SNP [dm3] 3L_7314374_SNP [dm6]	T	A	5.744e^-7	0.319	INTERGENIC
3L	7307472	3L_7307472_SNP [dm3] 3L_7314372_SNP [dm6]	C	G	6.467e^-7	0.319	INTERGENIC
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	6.797e^-7	0.319	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18204852	2R_18204852_DEL [dm3] 2R_22317347_DEL [dm6]	TT	T	1.415e^-6	0.531	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18197000	2R_18197000_DEL [dm3] 2R_22309495_DEL [dm6]	CC	C	2.061e^-6	0.56	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18173928	X_18173928_SNP [dm3] X_18279895_SNP [dm6]	G	T	2.722e^-6	0.56	INTRON upd3	TF binding site mE1_TFBS_chinmo
2R	20393637	2R_20393637_SNP [dm3] 2R_24506114_SNP [dm6]	G	A	2.724e^-6	0.56	UPSTREAM CG13581 INTERGENIC
2R	19371538	2R_19371538_SNP [dm3] 2R_23484015_SNP [dm6]	G	A	3.179e^-6	0.56	INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	4198842	3R_4198842_SNP [dm3] 3R_8373120_SNP [dm6]	T	C	3.635e^-6	0.56	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	3.643e^-6	0.56	INTRON CG42313
3R	14832720	3R_14832720_SNP [dm3] 3R_19006998_SNP [dm6]	A	G	3.867e^-6	0.56	INTRON gukh
2L	16814785	2L_16814785_SNP [dm3] 2L_16814785_SNP [dm6]	G	A	3.885e^-6	0.56	SYNONYMOUS_CODING CG13272 INTRON CG13280
2R	13704862	2R_13704862_SNP [dm3] 2R_17817357_SNP [dm6]	A	T	4.726e^-6	0.605	INTRON grh	regulatory region REDfly_CRMs
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	5.150e^-6	0.605	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2R	18199358	2R_18199358_SNP [dm3] 2R_22311853_SNP [dm6]	C	G	5.504e^-6	0.605	UTR_5_PRIME wdp UPSTREAM wdp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	5.863e^-6	0.605	INTRON Pvf3
2L	11971518	2L_11971518_SNP [dm3] 2L_11971518_SNP [dm6]	G	A	5.991e^-6	0.605	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	9725538	3R_9725538_SNP [dm3] 3R_13899816_SNP [dm6]	C	A	6.924e^-6	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	15051741	2L_15051741_SNP [dm3] 2L_15051741_SNP [dm6]	C	A	7.106e^-6	0.605	INTRON ck	regulatory region REDfly_CRMs
3R	12747590	3R_12747590_SNP [dm3] 3R_16921868_SNP [dm6]	A	T	8.242e^-6	0.605	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6401652	3R_6401652_SNP [dm3] 3R_10575930_SNP [dm6]	G	T	8.794e^-6	0.605	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15462740	3R_15462740_SNP [dm3] 3R_19637018_SNP [dm6]	G	T	9.037e^-6	0.605	INTRON subdued
2L	9875797	2L_9875797_SNP [dm3] 2L_9875797_SNP [dm6]	T	A	9.314e^-6	0.605	INTRON nAChRalpha6	TF binding site mE1_TFBS_inv
2L	11971458	2L_11971458_SNP [dm3] 2L_11971458_SNP [dm6]	A	T	9.573e^-6	0.605	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	12746844	3R_12746844_SNP [dm3] 3R_16921122_SNP [dm6]	A	G	9.633e^-6	0.605	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	20403433	3R_20403433_SNP [dm3] 3R_24577711_SNP [dm6]	G	A	1.033e^-5	0.605	UPSTREAM CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3014584	2L_3014584_SNP [dm3] 2L_3014584_SNP [dm6]	C	T	1.133e^-5	0.605	INTRON CG17265
3L	16975611	3L_16975611_SNP [dm3] 3L_16982511_SNP [dm6]	G	C	1.139e^-5	0.605	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3R	1742137	3R_1742137_SNP [dm3] 3R_5916415_SNP [dm6]	A	G	1.208e^-5	0.605	INTRON CG34113
2L	7494544	2L_7494544_SNP [dm3] 2L_7494544_SNP [dm6]	A	G	1.220e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18173239	X_18173239_SNP [dm3] X_18279206_SNP [dm6]	G	A	1.232e^-5	0.605	INTRON upd3
3R	3225259	3R_3225259_SNP [dm3] 3R_7399537_SNP [dm6]	T	C	1.260e^-5	0.605	INTERGENIC
3R	24938557	3R_24938557_INS [dm3] 3R_29112835_INS [dm6]	C	CTCTC	1.263e^-5	0.605	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16715132	2L_16715132_SNP [dm3] 2L_16715132_SNP [dm6]	G	A	1.296e^-5	0.605	UPSTREAM Cyt-c-d INTRON CG31808
2L	7494560	2L_7494560_SNP [dm3] 2L_7494560_SNP [dm6]	C	A	1.375e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20393686	2R_20393686_SNP [dm3] 2R_24506163_SNP [dm6]	G	A	1.378e^-5	0.605	UPSTREAM CG13581 INTERGENIC
2R	20393729	2R_20393729_SNP [dm3] 2R_24506206_SNP [dm6]	T	C	1.378e^-5	0.605	UPSTREAM CG13581 INTERGENIC
3R	23442945	3R_23442945_SNP [dm3] 3R_27617223_SNP [dm6]	C	T	1.425e^-5	0.605	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2R	18200781	2R_18200781_SNP [dm3] 2R_22313276_SNP [dm6]	C	A	1.436e^-5	0.605	INTRON CR44758
3L	15688754	3L_15688754_SNP [dm3] 3L_15695654_SNP [dm6]	A	G	1.438e^-5	0.605	INTERGENIC
2L	7494577	2L_7494577_SNP [dm3] 2L_7494577_SNP [dm6]	T	G	1.439e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11971437	2L_11971437_SNP [dm3] 2L_11971437_SNP [dm6]	G	A	1.466e^-5	0.605	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	2999329	3L_2999329_INS [dm3] 3L_2999329_INS [dm6]	G	TGGAAATT	1.474e^-5	0.605	INTERGENIC
2L	3011718	2L_3011718_SNP [dm3] 2L_3011718_SNP [dm6]	C	G	1.507e^-5	0.605	INTRON CG17265
2R	18200790	2R_18200790_SNP [dm3] 2R_22313285_SNP [dm6]	A	G	1.545e^-5	0.605	INTRON CR44758
2L	3011895	2L_3011895_SNP [dm3] 2L_3011895_SNP [dm6]	T	A	1.616e^-5	0.605	INTRON CG17265	TF binding site mE1_TFBS_inv
3L	17412712	3L_17412712_DEL [dm3] 3L_17419612_DEL [dm6]	CTGACGTACTATC...	C	1.630e^-5	0.605	INTRON blot	TF binding site BDTNP1_TFBS_da
2L	7494521	2L_7494521_SNP [dm3] 2L_7494521_SNP [dm6]	G	A	1.637e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7494558	2L_7494558_SNP [dm3] 2L_7494558_SNP [dm6]	A	T	1.642e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16813657	2L_16813657_SNP [dm3] 2L_16813657_SNP [dm6]	T	C	1.644e^-5	0.605	SYNONYMOUS_CODING CG13272 INTRON CG13280
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	1.724e^-5	0.605	INTRON Ac76E
3R	8372769	3R_8372769_SNP [dm3] 3R_12547047_SNP [dm6]	T	G	1.791e^-5	0.605	INTRON Octbeta3R
2L	5676707	2L_5676707_DEL [dm3] 2L_5676707_DEL [dm6]	CC	C	1.822e^-5	0.605	INTERGENIC
2R	20385363	2R_20385363_SNP [dm3] 2R_24497840_SNP [dm6]	G	A	1.839e^-5	0.605	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11199373	X_11199373_SNP [dm3] X_11305340_SNP [dm6]	C	T	1.864e^-5	0.605	INTERGENIC
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	1.961e^-5	0.605	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2R	18200356	2R_18200356_DEL [dm3] 2R_22312851_DEL [dm6]	GGTTTCGGGTGATATCACCC...	G	1.988e^-5	0.605	UPSTREAM CR44758 & 1 other INTERGENIC EXON CR44758
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	2.073e^-5	0.605	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	15223820	2L_15223820_SNP [dm3] 2L_15223820_SNP [dm6]	C	G	2.086e^-5	0.605	INTERGENIC
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	2.104e^-5	0.605	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7494527	2L_7494527_DEL [dm3] 2L_7494527_DEL [dm6]	TGACCT	T	2.123e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7494541	2L_7494541_DEL [dm3] 2L_7494541_DEL [dm6]	CT	C	2.123e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5000954	3R_5000954_DEL [dm3] 3R_9175232_DEL [dm6]	AA	A	2.127e^-5	0.605	INTRON pum
3R	5260745	3R_5260745_SNP [dm3] 3R_9435023_SNP [dm6]	T	G	2.158e^-5	0.605	INTRON ps	TF binding site mE1_TFBS_cad
3R	23442946	3R_23442946_SNP [dm3] 3R_27617224_SNP [dm6]	A	C	2.175e^-5	0.605	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
3R	4992367	3R_4992367_SNP [dm3] 3R_9166645_SNP [dm6]	A	T	2.175e^-5	0.605	INTRON pum
2L	11971404	2L_11971404_DEL [dm3] 2L_11971404_DEL [dm6]	ATATATCATCTA...	A	2.292e^-5	0.605	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	9395811	3L_9395811_SNP [dm3] 3L_9402711_SNP [dm6]	G	T	2.353e^-5	0.605	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24880399	3R_24880399_SNP [dm3] 3R_29054677_SNP [dm6]	A	T	2.406e^-5	0.605	DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18187521	2R_18187521_SNP [dm3] 2R_22300016_SNP [dm6]	C	T	2.413e^-5	0.605	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7494562	2L_7494562_SNP [dm3] 2L_7494562_SNP [dm6]	A	C	2.445e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7494563	2L_7494563_DEL [dm3] 2L_7494563_DEL [dm6]	AAACGCAGCTTC...	A	2.445e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7494586	2L_7494586_SNP [dm3] 2L_7494586_SNP [dm6]	A	C	2.445e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7376439	3R_7376439_INS [dm3] 3R_11550717_INS [dm6]	A	AACAAGCACAA...	2.484e^-5	0.605	INTERGENIC
X	16698041	X_16698041_DEL [dm3] X_16804008_DEL [dm6]	TA	T	2.504e^-5	0.605	UPSTREAM CG9125 INTRON CG13005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7494548	2L_7494548_SNP [dm3] 2L_7494548_SNP [dm6]	T	C	2.509e^-5	0.605	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5260741	3R_5260741_SNP [dm3] 3R_9435019_SNP [dm6]	A	C	2.527e^-5	0.605	INTRON ps	TF binding site mE1_TFBS_cad
2R	18203616	2R_18203616_SNP [dm3] 2R_22316111_SNP [dm6]	G	C	2.549e^-5	0.605	INTRON CR44758
3L	1079337	3L_1079337_SNP [dm3] 3L_1079337_SNP [dm6]	A	C	2.642e^-5	0.609	INTRON bab1
3R	15462755	3R_15462755_SNP [dm3] 3R_19637033_SNP [dm6]	T	G	2.675e^-5	0.609	INTRON subdued
2R	19371192	2R_19371192_SNP [dm3] 2R_23483669_SNP [dm6]	C	T	2.680e^-5	0.609	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	2.711e^-5	0.609	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17968366	2R_17968366_DEL [dm3] 2R_22080861_DEL [dm6]	AAATTAG	A	2.762e^-5	0.609	INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7494580	2L_7494580_MNP [dm3] 2L_7494580_MNP [dm6]	GGAA	CTCG	2.765e^-5	0.609	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9395675	3L_9395675_SNP [dm3] 3L_9402575_SNP [dm6]	G	A	2.793e^-5	0.609	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7494578	2L_7494578_SNP [dm3] 2L_7494578_SNP [dm6]	A	T	2.870e^-5	0.614	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18173144	X_18173144_SNP [dm3] X_18279111_SNP [dm6]	G	A	2.921e^-5	0.614	INTRON upd3
X	18173959	X_18173959_SNP [dm3] X_18279926_SNP [dm6]	T	A	2.936e^-5	0.614	INTRON upd3
3R	19258832	3R_19258832_DEL [dm3] 3R_23433110_DEL [dm6]	TT	T	2.944e^-5	0.614	INTRON CG4374
2R	4417236	2R_4417236_SNP [dm3] 2R_8529731_SNP [dm6]	C	T	3.073e^-5	0.614	INTRON mtt
2L	5134149	2L_5134149_SNP [dm3] 2L_5134149_SNP [dm6]	G	A	3.079e^-5	0.614	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	3.175e^-5	0.614	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16821030	3L_16821030_SNP [dm3] 3L_16827930_SNP [dm6]	A	G	3.228e^-5	0.614	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5878479	3L_5878479_SNP [dm3] 3L_5885379_SNP [dm6]	A	G	3.259e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	3.276e^-5	0.614	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16738404	3L_16738404_SNP [dm3] 3L_16745304_SNP [dm6]	C	T	3.289e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	6401662	3R_6401662_DEL [dm3] 3R_10575940_DEL [dm6]	TTAAAATGA	T	3.317e^-5	0.614	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13383275	3L_13383275_SNP [dm3] 3L_13390175_SNP [dm6]	T	A	3.329e^-5	0.614	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6586711	2L_6586711_SNP [dm3] 2L_6586711_SNP [dm6]	A	G	3.351e^-5	0.614	UTR_5_PRIME CG11319
2L	7494556	2L_7494556_SNP [dm3] 2L_7494556_SNP [dm6]	C	A	3.365e^-5	0.614	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9395767	3L_9395767_SNP [dm3] 3L_9402667_SNP [dm6]	A	T	3.422e^-5	0.614	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9395719	3L_9395719_SNP [dm3] 3L_9402619_SNP [dm6]	C	G	3.445e^-5	0.614	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18186684	2R_18186684_SNP [dm3] 2R_22299179_SNP [dm6]	T	C	3.460e^-5	0.614	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18206822	2R_18206822_SNP [dm3] 2R_22319317_SNP [dm6]	C	T	3.497e^-5	0.614	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	18206850	2R_18206850_SNP [dm3] 2R_22319345_SNP [dm6]	C	G	3.497e^-5	0.614	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	4417148	2R_4417148_SNP [dm3] 2R_8529643_SNP [dm6]	G	A	3.584e^-5	0.614	INTRON mtt
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	3.593e^-5	0.614	UTR_3_PRIME CG5278
2L	9154896	2L_9154896_SNP [dm3] 2L_9154896_SNP [dm6]	A	G	3.614e^-5	0.614	INTRON CG32982
X	17636828	X_17636828_SNP [dm3] X_17742795_SNP [dm6]	G	C	3.685e^-5	0.614	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18206740	2R_18206740_SNP [dm3] 2R_22319235_SNP [dm6]	G	T	3.692e^-5	0.614	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	4328923	2R_4328923_SNP [dm3] 2R_8441418_SNP [dm6]	C	T	3.694e^-5	0.614	NON_SYNONYMOUS_CODING Cyp4ad1 UPSTREAM Cyp4ad1
3L	22418216	3L_22418216_SNP [dm3] 3L_22425116_SNP [dm6]	A	T	3.719e^-5	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	3.732e^-5	0.614	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20415835	2R_20415835_SNP [dm3] 2R_24528312_SNP [dm6]	A	C	3.762e^-5	0.614	NON_SYNONYMOUS_CODING Brca2	TF binding site mE1_TFBS_HSA
X	18173655	X_18173655_SNP [dm3] X_18279622_SNP [dm6]	C	T	3.912e^-5	0.624	SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	3.987e^-5	0.624	INTERGENIC
3R	2723179	3R_2723179_SNP [dm3] 3R_6897457_SNP [dm6]	T	A	4.013e^-5	0.624	UTR_3_PRIME Antp DOWNSTREAM Antp
X	13924696	X_13924696_SNP [dm3] X_14030663_SNP [dm6]	A	C	4.082e^-5	0.624	INTERGENIC
2L	7494554	2L_7494554_SNP [dm3] 2L_7494554_SNP [dm6]	C	T	4.097e^-5	0.624	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5001765	3R_5001765_SNP [dm3] 3R_9176043_SNP [dm6]	C	T	4.138e^-5	0.624	INTRON pum
3R	8148271	3R_8148271_DEL [dm3] 3R_12322549_DEL [dm6]	GAATCTCAATTCGTTG...	G	4.139e^-5	0.624	UPSTREAM CG10013 DOWNSTREAM tRNA:CR31432 INTERGENIC EXON tRNA:CR31432
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	4.171e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18204955	2R_18204955_SNP [dm3] 2R_22317450_SNP [dm6]	A	G	4.175e^-5	0.624	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7494549	2L_7494549_SNP [dm3] 2L_7494549_SNP [dm6]	T	C	4.176e^-5	0.624	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	4.206e^-5	0.624	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18592538	2R_18592538_SNP [dm3] 2R_22705033_SNP [dm6]	C	T	4.222e^-5	0.624	SYNONYMOUS_CODING Obp58b UPSTREAM CG30259 DOWNSTREAM Obp58c
2L	1025473	2L_1025473_SNP [dm3] 2L_1025473_SNP [dm6]	T	C	4.366e^-5	0.64	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11023708	3L_11023708_SNP [dm3] 3L_11030608_SNP [dm6]	A	C	4.443e^-5	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	4.474e^-5	0.642	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15814513	2L_15814513_SNP [dm3] 2L_15814513_SNP [dm6]	A	T	4.495e^-5	0.642	INTERGENIC
3R	16355629	3R_16355629_SNP [dm3] 3R_20529907_SNP [dm6]	C	T	4.530e^-5	0.642	INTERGENIC
3L	7307505	3L_7307505_SNP [dm3] 3L_7314405_SNP [dm6]	C	T	4.600e^-5	0.642	INTERGENIC
2R	20414662	2R_20414662_SNP [dm3] 2R_24527139_SNP [dm6]	A	G	4.683e^-5	0.642	NON_SYNONYMOUS_CODING Brca2
2R	20415840	2R_20415840_SNP [dm3] 2R_24528317_SNP [dm6]	G	A	4.683e^-5	0.642	NON_SYNONYMOUS_CODING Brca2	TF binding site mE1_TFBS_HSA
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	4.713e^-5	0.642	INTRON Ac76E
3L	13655204	3L_13655204_DEL [dm3] 3L_13662104_DEL [dm6]	GT	A	4.742e^-5	0.642	INTRON bru-3
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	4.754e^-5	0.642	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5922882	X_5922882_SNP [dm3] X_6028849_SNP [dm6]	T	G	4.757e^-5	0.642	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12425020	3L_12425020_SNP [dm3] 3L_12431920_SNP [dm6]	T	G	4.806e^-5	0.643	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6110473	2L_6110473_SNP [dm3] 2L_6110473_SNP [dm6]	A	G	4.849e^-5	0.643	INTRON stai
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	4.865e^-5	0.643	INTRON Oamb
3L	12710988	3L_12710988_DEL [dm3] 3L_12717888_DEL [dm6]	AAA	G	4.903e^-5	0.643	INTERGENIC
2R	20419380	2R_20419380_DEL [dm3] 2R_24531857_DEL [dm6]	GTTTTGGTTCAATCGG...	G	5.111e^-5	0.658	UPSTREAM CG13585 & 1 other INTRON CG13585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18560195	3L_18560195_DEL [dm3] 3L_18567095_DEL [dm6]	CATAGGATTTTCGATTGC...	C	5.119e^-5	0.658	INTRON AstC-R1
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	5.126e^-5	0.658	INTRON CG17150
2L	18833743	2L_18833743_DEL [dm3] 2L_18833743_DEL [dm6]	TAA	T	5.222e^-5	0.658	UTR_3_PRIME CG10600 DOWNSTREAM ScpX
2R	17355296	2R_17355296_SNP [dm3] 2R_21467791_SNP [dm6]	G	T	5.268e^-5	0.658	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5559914	2L_5559914_SNP [dm3] 2L_5559914_SNP [dm6]	G	C	5.283e^-5	0.658	DOWNSTREAM GluRIIA INTRON GluRIIB	TF binding site mE1_TFBS_inv
3R	16355299	3R_16355299_SNP [dm3] 3R_20529577_SNP [dm6]	A	T	5.290e^-5	0.658	INTERGENIC
2R	8728842	2R_8728842_SNP [dm3] 2R_12841337_SNP [dm6]	C	T	5.310e^-5	0.658	SYNONYMOUS_CODING Cyp9h1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1481022	2L_1481022_SNP [dm3] 2L_1481022_SNP [dm6]	G	T	5.391e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15662461	2R_15662461_SNP [dm3] 2R_19774956_SNP [dm6]	G	T	5.392e^-5	0.658	INTERGENIC
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	5.470e^-5	0.658	INTRON sr
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	5.481e^-5	0.658	INTRON CG13579
3R	20375766	3R_20375766_SNP [dm3] 3R_24550044_SNP [dm6]	T	A	5.492e^-5	0.658	INTRON Esyt2
X	7987952	X_7987952_SNP [dm3] X_8093919_SNP [dm6]	T	C	5.582e^-5	0.658	UTR_5_PRIME Ubc-E2H DOWNSTREAM CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	16714969	2L_16714969_SNP [dm3] 2L_16714969_SNP [dm6]	C	A	5.766e^-5	0.658	UPSTREAM Cyt-c-d INTRON CG31808
X	11836506	X_11836506_SNP [dm3] X_11942473_SNP [dm6]	T	G	5.777e^-5	0.658	INTRON cac
X	7987356	X_7987356_SNP [dm3] X_8093323_SNP [dm6]	T	C	5.864e^-5	0.658	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17305040	2R_17305040_SNP [dm3] 2R_21417535_SNP [dm6]	C	T	5.891e^-5	0.658	UPSTREAM Sdc INTRON Sdc
3L	12424997	3L_12424997_INS [dm3] 3L_12431897_INS [dm6]	T	TC	5.897e^-5	0.658	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12566386	2L_12566386_SNP [dm3] 2L_12566386_SNP [dm6]	T	G	5.900e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18205295	2R_18205295_SNP [dm3] 2R_22317790_SNP [dm6]	C	T	5.900e^-5	0.658	UTR_5_PRIME Gp150 UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8859773	3L_8859773_SNP [dm3] 3L_8866673_SNP [dm6]	A	G	5.950e^-5	0.658	INTRON dally
3L	9395745	3L_9395745_SNP [dm3] 3L_9402645_SNP [dm6]	G	T	5.970e^-5	0.658	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20393001	2R_20393001_SNP [dm3] 2R_24505478_SNP [dm6]	C	T	5.997e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20385539	2R_20385539_SNP [dm3] 2R_24498016_SNP [dm6]	C	T	6.002e^-5	0.658	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9395698	3L_9395698_SNP [dm3] 3L_9402598_SNP [dm6]	T	G	6.009e^-5	0.658	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18708941	2L_18708941_SNP [dm3] 2L_18708941_SNP [dm6]	C	T	6.026e^-5	0.658	NON_SYNONYMOUS_CODING Grip71 UPSTREAM Faf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11845092	X_11845092_SNP [dm3] X_11951059_SNP [dm6]	A	T	6.054e^-5	0.658	INTRON cac
2L	9832123	2L_9832123_SNP [dm3] 2L_9832123_SNP [dm6]	G	T	6.122e^-5	0.658	INTRON nAChRalpha6
X	13770704	X_13770704_INS [dm3] X_13876671_INS [dm6]	T	TGT	6.149e^-5	0.658	INTRON mamo
2L	12727447	2L_12727447_SNP [dm3] 2L_12727447_SNP [dm6]	C	T	6.260e^-5	0.658	INTRON MRP
2R	3801588	2R_3801588_SNP [dm3] 2R_7914083_SNP [dm6]	C	T	6.289e^-5	0.658	DOWNSTREAM CG12159 INTRON CG30377
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	6.315e^-5	0.658	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15224236	2L_15224236_SNP [dm3] 2L_15224236_SNP [dm6]	T	C	6.344e^-5	0.658	INTERGENIC
2L	7494545	2L_7494545_SNP [dm3] 2L_7494545_SNP [dm6]	A	C	6.345e^-5	0.658	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	3752939	3R_3752939_SNP [dm3] 3R_7927217_SNP [dm6]	C	T	6.377e^-5	0.658	INTRON dsx
2R	18325623	2R_18325623_SNP [dm3] 2R_22438118_SNP [dm6]	G	T	6.423e^-5	0.658	INTERGENIC
3R	13284351	3R_13284351_SNP [dm3] 3R_17458629_SNP [dm6]	A	C	6.437e^-5	0.658	INTERGENIC
3R	9377112	3R_9377112_SNP [dm3] 3R_13551390_SNP [dm6]	A	G	6.443e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	8900827	X_8900827_SNP [dm3] X_9006794_SNP [dm6]	G	T	6.507e^-5	0.658	INTRON rdgA & 1 other
2L	15392535	2L_15392535_SNP [dm3] 2L_15392535_SNP [dm6]	A	G	6.543e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5761968	3L_5761968_SNP [dm3] 3L_5768868_SNP [dm6]	G	A	6.555e^-5	0.658	UPSTREAM scny & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	6.614e^-5	0.658	INTRON sr
3L	9395707	3L_9395707_SNP [dm3] 3L_9402607_SNP [dm6]	T	C	6.636e^-5	0.658	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	11072212	X_11072212_SNP [dm3] X_11178179_SNP [dm6]	C	A	6.721e^-5	0.658	INTERGENIC
3L	9395751	3L_9395751_SNP [dm3] 3L_9402651_SNP [dm6]	C	G	6.804e^-5	0.658	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9395702	3L_9395702_SNP [dm3] 3L_9402602_SNP [dm6]	C	T	6.806e^-5	0.658	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22249370	3L_22249370_SNP [dm3] 3L_22256270_SNP [dm6]	A	G	6.812e^-5	0.658	INTERGENIC
3R	17029158	3R_17029158_SNP [dm3] 3R_21203436_SNP [dm6]	A	T	6.827e^-5	0.658	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14434238	2R_14434238_INS [dm3] 2R_18546733_INS [dm6]	A	ACTTTTAT	6.836e^-5	0.658	INTRON Rgk2
3R	15460816	3R_15460816_SNP [dm3] 3R_19635094_SNP [dm6]	G	A	6.848e^-5	0.658	SYNONYMOUS_CODING CG34138 INTRON subdued
3L	8096916	3L_8096916_SNP [dm3] 3L_8103816_SNP [dm6]	T	C	6.868e^-5	0.658	SYNONYMOUS_CODING Ect4	TF binding site mE1_TFBS_cad
3L	9395757	3L_9395757_SNP [dm3] 3L_9402657_SNP [dm6]	T	C	6.907e^-5	0.658	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	6.911e^-5	0.658	INTRON salm	TF binding site mE1_TFBS_inv
2R	18203581	2R_18203581_SNP [dm3] 2R_22316076_SNP [dm6]	A	C	6.971e^-5	0.66	INTRON CR44758
3L	5630257	3L_5630257_SNP [dm3] 3L_5637157_SNP [dm6]	A	G	7.057e^-5	0.66	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8115272	2R_8115272_SNP [dm3] 2R_12227767_SNP [dm6]	T	C	7.116e^-5	0.66	UPSTREAM CG8854 INTRON CG8854
2R	4062538	2R_4062538_SNP [dm3] 2R_8175033_SNP [dm6]	C	G	7.146e^-5	0.66	INTRON LRP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	13314732	3R_13314732_SNP [dm3] 3R_17489010_SNP [dm6]	G	A	7.178e^-5	0.66	INTRON Dscam3
X	13734740	X_13734740_SNP [dm3] X_13840707_SNP [dm6]	A	T	7.193e^-5	0.66	UPSTREAM AMPdeam INTRON AMPdeam
2L	14693179	2L_14693179_SNP [dm3] 2L_14693179_SNP [dm6]	A	G	7.252e^-5	0.66	INTERGENIC
3L	10491293	3L_10491293_SNP [dm3] 3L_10498193_SNP [dm6]	C	A	7.293e^-5	0.66	INTRON A2bp1
X	16070141	X_16070141_SNP [dm3] X_16176108_SNP [dm6]	G	A	7.314e^-5	0.66	INTERGENIC
3R	12744085	3R_12744085_SNP [dm3] 3R_16918363_SNP [dm6]	T	A	7.420e^-5	0.66	INTRON iab-8	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	20158093	2R_20158093_SNP [dm3] 2R_24270570_SNP [dm6]	C	T	7.523e^-5	0.66	INTERGENIC
X	19256433	X_19256433_SNP [dm3] X_19362400_SNP [dm6]	T	A	7.536e^-5	0.66	INTRON kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16789215	2R_16789215_SNP [dm3] 2R_20901710_SNP [dm6]	A	C	7.760e^-5	0.66	INTRON otp
2R	20379376	2R_20379376_SNP [dm3] 2R_24491853_SNP [dm6]	G	A	7.849e^-5	0.66	DOWNSTREAM CG13589 INTERGENIC
3L	12424973	3L_12424973_SNP [dm3] 3L_12431873_SNP [dm6]	G	T	7.929e^-5	0.66	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14478382	2R_14478382_SNP [dm3] 2R_18590877_SNP [dm6]	T	C	7.935e^-5	0.66	INTRON GEFmeso
3R	13924945	3R_13924945_SNP [dm3] 3R_18099223_SNP [dm6]	C	T	7.962e^-5	0.66	INTRON sr
3L	1288381	3L_1288381_SNP [dm3] 3L_1288381_SNP [dm6]	C	G	7.996e^-5	0.66	DOWNSTREAM CG32333 INTRON CG32333
X	15135600	X_15135600_SNP [dm3] X_15241567_SNP [dm6]	T	C	8.000e^-5	0.66	INTERGENIC
3R	4998854	3R_4998854_SNP [dm3] 3R_9173132_SNP [dm6]	A	G	8.006e^-5	0.66	INTRON pum
2L	6241175	2L_6241175_SNP [dm3] 2L_6241175_SNP [dm6]	A	G	8.046e^-5	0.66	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1079442	3L_1079442_INS [dm3] 3L_1079442_INS [dm6]	T	TT	8.084e^-5	0.66	INTRON bab1
2L	10704096	2L_10704096_SNP [dm3] 2L_10704096_SNP [dm6]	T	A	8.132e^-5	0.66	INTRON Lip2 & 1 other
3L	9395763	3L_9395763_SNP [dm3] 3L_9402663_SNP [dm6]	T	G	8.174e^-5	0.66	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11971634	2L_11971634_SNP [dm3] 2L_11971634_SNP [dm6]	C	T	8.231e^-5	0.66	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18372112	3R_18372112_SNP [dm3] 3R_22546390_SNP [dm6]	A	G	8.253e^-5	0.66	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_twi
3R	15458956	3R_15458956_SNP [dm3] 3R_19633234_SNP [dm6]	A	G	8.287e^-5	0.66	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15458952	3R_15458952_SNP [dm3] 3R_19633230_SNP [dm6]	T	G	8.297e^-5	0.66	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	8.315e^-5	0.66	INTRON Cad87A
2R	20389780	2R_20389780_SNP [dm3] 2R_24502257_SNP [dm6]	G	C	8.370e^-5	0.66	UTR_5_PRIME Prosalpha4T2	TF binding site mE1_TFBS_chinmo
2R	20385509	2R_20385509_SNP [dm3] 2R_24497986_SNP [dm6]	A	G	8.407e^-5	0.66	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1288917	3L_1288917_SNP [dm3] 3L_1288917_SNP [dm6]	G	A	8.410e^-5	0.66	DOWNSTREAM CG32333 INTRON CG32333	TF binding site mE1_TFBS_chinmo
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	8.466e^-5	0.66	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3L	11605928	3L_11605928_SNP [dm3] 3L_11612828_SNP [dm6]	C	T	8.501e^-5	0.66	SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_sens
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	8.555e^-5	0.66	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14694101	2L_14694101_SNP [dm3] 2L_14694101_SNP [dm6]	T	A	8.621e^-5	0.66	INTERGENIC
2R	8109757	2R_8109757_SNP [dm3] 2R_12222252_SNP [dm6]	A	C	8.789e^-5	0.66	INTERGENIC
2L	11781928	2L_11781928_SNP [dm3] 2L_11781928_SNP [dm6]	T	A	8.806e^-5	0.66	INTERGENIC
2R	18188692	2R_18188692_SNP [dm3] 2R_22301187_SNP [dm6]	A	T	8.833e^-5	0.66	INTRON wdp	TF binding site mE1_TFBS_cad
2R	13785943	2R_13785943_SNP [dm3] 2R_17898438_SNP [dm6]	C	T	8.836e^-5	0.66	INTRON Elk
2R	18179947	2R_18179947_DEL [dm3] 2R_22292442_DEL [dm6]	TT	T	8.842e^-5	0.66	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2L	9937775	2L_9937775_SNP [dm3] 2L_9937775_SNP [dm6]	G	A	8.864e^-5	0.66	SYNONYMOUS_CODING CG31712 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7307488	3L_7307488_SNP [dm3] 3L_7314388_SNP [dm6]	G	A	8.897e^-5	0.66	INTERGENIC
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	8.904e^-5	0.66	INTRON 4EHP
2R	15850394	2R_15850394_SNP [dm3] 2R_19962889_SNP [dm6]	A	G	8.927e^-5	0.66	INTERGENIC
3L	12424968	3L_12424968_SNP [dm3] 3L_12431868_SNP [dm6]	T	A	8.945e^-5	0.66	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	19115000	X_19115000_SNP [dm3] X_19220967_SNP [dm6]	G	T	8.988e^-5	0.66	UTR_5_PRIME CG7884	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	9.023e^-5	0.66	INTRON Ac76E
2R	20379707	2R_20379707_SNP [dm3] 2R_24492184_SNP [dm6]	G	T	9.026e^-5	0.66	DOWNSTREAM CG13589 INTERGENIC
2L	16714981	2L_16714981_INS [dm3] 2L_16714981_INS [dm6]	G	GC	9.069e^-5	0.66	UPSTREAM Cyt-c-d INTRON CG31808
2R	20392306	2R_20392306_SNP [dm3] 2R_24504783_SNP [dm6]	G	A	9.138e^-5	0.66	INTERGENIC
2R	20392829	2R_20392829_SNP [dm3] 2R_24505306_SNP [dm6]	C	T	9.138e^-5	0.66	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16714961	2L_16714961_SNP [dm3] 2L_16714961_SNP [dm6]	T	A	9.161e^-5	0.66	UPSTREAM Cyt-c-d INTRON CG31808
3R	9679238	3R_9679238_SNP [dm3] 3R_13853516_SNP [dm6]	T	C	9.205e^-5	0.66	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20404193	2R_20404193_DEL [dm3] 2R_24516670_DEL [dm6]	GAG	G	9.215e^-5	0.66	FRAME_SHIFT Ir60b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18615962	3R_18615962_SNP [dm3] 3R_22790240_SNP [dm6]	G	A	9.250e^-5	0.66	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12748232	2L_12748232_SNP [dm3] 2L_12748232_SNP [dm6]	A	G	9.303e^-5	0.66	INTERGENIC
2L	4685769	2L_4685769_SNP [dm3] 2L_4685769_SNP [dm6]	G	A	9.365e^-5	0.66	NON_SYNONYMOUS_CODING CG11929
X	13924593	X_13924593_SNP [dm3] X_14030560_SNP [dm6]	T	A	9.377e^-5	0.66	INTERGENIC
3L	2621662	3L_2621662_SNP [dm3] 3L_2621662_SNP [dm6]	C	A	9.399e^-5	0.66	INTRON Pxn
3L	14425025	3L_14425025_SNP [dm3] 3L_14431925_SNP [dm6]	G	C	9.482e^-5	0.66	INTRON bbg
2R	8333261	2R_8333261_SNP [dm3] 2R_12445756_SNP [dm6]	T	A	9.524e^-5	0.66	INTRON Dyb
2L	6586717	2L_6586717_SNP [dm3] 2L_6586717_SNP [dm6]	T	C	9.562e^-5	0.66	UTR_5_PRIME CG11319
3R	11507619	3R_11507619_SNP [dm3] 3R_15681897_SNP [dm6]	A	C	9.570e^-5	0.66	INTRON pxb
2L	1964985	2L_1964985_SNP [dm3] 2L_1964985_SNP [dm6]	T	A	9.615e^-5	0.66	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3833744	2L_3833744_SNP [dm3] 2L_3833744_SNP [dm6]	C	A	9.655e^-5	0.66	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19652156	X_19652156_SNP [dm3] X_19758123_SNP [dm6]	C	T	9.697e^-5	0.66	SYNONYMOUS_CODING Pmp70	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5897772	3L_5897772_SNP [dm3] 3L_5904672_SNP [dm6]	G	A	9.739e^-5	0.66	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
3L	22249961	3L_22249961_SNP [dm3] 3L_22256861_SNP [dm6]	G	A	9.741e^-5	0.66	DOWNSTREAM Rich INTERGENIC
2L	14693000	2L_14693000_SNP [dm3] 2L_14693000_SNP [dm6]	C	G	9.782e^-5	0.66	INTERGENIC
2R	18204876	2R_18204876_SNP [dm3] 2R_22317371_SNP [dm6]	C	T	9.787e^-5	0.66	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	9.799e^-5	0.66	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4573617	X_4573617_SNP [dm3] X_4679584_SNP [dm6]	A	G	9.875e^-5	0.66	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	17298100	X_17298100_SNP [dm3] X_17404067_SNP [dm6]	C	A	9.902e^-5	0.66	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	9384889	3R_9384889_INS [dm3] 3R_13559167_INS [dm6]	A	AA	9.919e^-5	0.66	INTERGENIC
3L	12425157	3L_12425157_SNP [dm3] 3L_12432057_SNP [dm6]	T	C	9.947e^-5	0.66	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	9.951e^-5	0.66	INTRON Oamb
3L	1452913	3L_1452913_SNP [dm3] 3L_1452913_SNP [dm6]	C	T	1.005e^-4	0.66	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	20378008	2R_20378008_SNP [dm3] 2R_24490485_SNP [dm6]	T	A	1.008e^-4	0.66	UTR_3_PRIME CG13579
2L	9937697	2L_9937697_SNP [dm3] 2L_9937697_SNP [dm6]	A	G	1.009e^-4	0.66	SYNONYMOUS_CODING CG31712 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8728822	2R_8728822_SNP [dm3] 2R_12841317_SNP [dm6]	T	C	1.013e^-4	0.66	NON_SYNONYMOUS_CODING Cyp9h1	TF binding site mE1_TFBS_HSA
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	1.019e^-4	0.66	INTRON CG10237
2R	6954351	2R_6954351_SNP [dm3] 2R_11066846_SNP [dm6]	C	A	1.019e^-4	0.66	INTRON luna
2R	3795201	2R_3795201_SNP [dm3] 2R_7907696_SNP [dm6]	A	G	1.026e^-4	0.66	INTRON CG30377
2L	18595161	2L_18595161_SNP [dm3] 2L_18595161_SNP [dm6]	T	C	1.026e^-4	0.66	UTR_3_PRIME CG15160 DOWNSTREAM amos INTRON CG15160
2L	15461232	2L_15461232_SNP [dm3] 2L_15461232_SNP [dm6]	C	T	1.028e^-4	0.66	INTERGENIC
3R	23776803	3R_23776803_SNP [dm3] 3R_27951081_SNP [dm6]	T	C	1.029e^-4	0.66	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad
X	18737232	X_18737232_SNP [dm3] X_18843199_SNP [dm6]	T	G	1.044e^-4	0.66	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	10314926	3L_10314926_SNP [dm3] 3L_10321826_SNP [dm6]	C	A	1.046e^-4	0.66	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	7987732	X_7987732_SNP [dm3] X_8093699_SNP [dm6]	A	G	1.046e^-4	0.66	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	18615938	3R_18615938_SNP [dm3] 3R_22790216_SNP [dm6]	G	C	1.057e^-4	0.66	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	1.058e^-4	0.66	INTRON Cad87A
2R	10544813	2R_10544813_SNP [dm3] 2R_14657308_SNP [dm6]	C	T	1.058e^-4	0.66	SYNONYMOUS_CODING Adgf-E
2R	14357361	2R_14357361_SNP [dm3] 2R_18469856_SNP [dm6]	G	A	1.059e^-4	0.66	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5898396	3L_5898396_SNP [dm3] 3L_5905296_SNP [dm6]	T	A	1.062e^-4	0.66	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
2R	18186277	2R_18186277_SNP [dm3] 2R_22298772_SNP [dm6]	C	T	1.064e^-4	0.66	UTR_3_PRIME wdp	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11612855	3L_11612855_SNP [dm3] 3L_11619755_SNP [dm6]	A	T	1.070e^-4	0.66	SYNONYMOUS_CODING Muc68Ca DOWNSTREAM CG6084
3R	13758606	3R_13758606_SNP [dm3] 3R_17932884_SNP [dm6]	G	A	1.073e^-4	0.66	INTRON cpo
3L	15672674	3L_15672674_SNP [dm3] 3L_15679574_SNP [dm6]	G	T	1.074e^-4	0.66	UPSTREAM CG7304 INTERGENIC
3R	13284385	3R_13284385_SNP [dm3] 3R_17458663_SNP [dm6]	G	T	1.077e^-4	0.66	INTERGENIC
2R	5680003	2R_5680003_SNP [dm3] 2R_9792498_SNP [dm6]	G	T	1.086e^-4	0.66	UPSTREAM CG1698 INTRON CG1688
2R	12314579	2R_12314579_SNP [dm3] 2R_16427074_SNP [dm6]	T	G	1.105e^-4	0.66	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14938410	3L_14938410_SNP [dm3] 3L_14945310_SNP [dm6]	G	A	1.115e^-4	0.66	UPSTREAM CG13465 DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	612913	3L_612913_SNP [dm3] 3L_612913_SNP [dm6]	A	G	1.118e^-4	0.66	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	20415328	2R_20415328_SNP [dm3] 2R_24527805_SNP [dm6]	A	G	1.119e^-4	0.66	NON_SYNONYMOUS_CODING Brca2	TF binding site mE1_TFBS_sens
X	18177404	X_18177404_DEL [dm3] X_18283371_DEL [dm6]	CCAATC	C	1.125e^-4	0.66	INTRON upd3
3L	9497374	3L_9497374_SNP [dm3] 3L_9504274_SNP [dm6]	T	C	1.126e^-4	0.66	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8910218	2R_8910218_DEL [dm3] 2R_13022713_DEL [dm6]	TT	T	1.129e^-4	0.66	INTERGENIC	TF binding site mE1_TFBS_sens
2R	9149182	2R_9149182_SNP [dm3] 2R_13261677_SNP [dm6]	G	T	1.132e^-4	0.66	UPSTREAM CG42319 INTRON CG42319
3L	4029085	3L_4029085_SNP [dm3] 3L_4029085_SNP [dm6]	T	C	1.153e^-4	0.66	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c DOWNSTREAM Gr64a
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	1.160e^-4	0.66	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19969516	3L_19969516_SNP [dm3] 3L_19976416_SNP [dm6]	A	C	1.160e^-4	0.66	INTRON Ac76E
2L	3015387	2L_3015387_SNP [dm3] 2L_3015387_SNP [dm6]	C	G	1.161e^-4	0.66	SYNONYMOUS_CODING CG17265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18203202	2R_18203202_SNP [dm3] 2R_22315697_SNP [dm6]	C	G	1.166e^-4	0.66	INTRON CR44758
X	9742756	X_9742756_SNP [dm3] X_9848723_SNP [dm6]	T	C	1.169e^-4	0.66	SPLICE_SITE_REGION CG32698 INTRON CG32698
2L	14687773	2L_14687773_SNP [dm3] 2L_14687773_SNP [dm6]	A	G	1.169e^-4	0.66	INTRON osp
3R	12747646	3R_12747646_SNP [dm3] 3R_16921924_SNP [dm6]	G	A	1.171e^-4	0.66	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	18737224	X_18737224_SNP [dm3] X_18843191_SNP [dm6]	A	C	1.174e^-4	0.66	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	9395770	3L_9395770_DEL [dm3] 3L_9402670_DEL [dm6]	TTC	AA	1.176e^-4	0.66	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9733360	3R_9733360_SNP [dm3] 3R_13907638_SNP [dm6]	G	A	1.179e^-4	0.66	INTERGENIC
3R	3217179	3R_3217179_SNP [dm3] 3R_7391457_SNP [dm6]	T	C	1.187e^-4	0.66	UTR_5_PRIME CG42650
3R	13292094	3R_13292094_SNP [dm3] 3R_17466372_SNP [dm6]	G	T	1.196e^-4	0.66	INTERGENIC
3L	4104706	3L_4104706_SNP [dm3] 3L_4104706_SNP [dm6]	A	C	1.202e^-4	0.66	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24723042	3R_24723042_SNP [dm3] 3R_28897320_SNP [dm6]	C	T	1.203e^-4	0.66	INTRON Doa
2L	10008437	2L_10008437_SNP [dm3] 2L_10008437_SNP [dm6]	G	A	1.212e^-4	0.66	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3R	4995451	3R_4995451_SNP [dm3] 3R_9169729_SNP [dm6]	T	C	1.215e^-4	0.66	INTRON pum
3R	13293283	3R_13293283_DEL [dm3] 3R_17467561_DEL [dm6]	GTGTGGCTGTGACTGTGG...	G	1.218e^-4	0.66	INTERGENIC
2R	14507834	2R_14507834_SNP [dm3] 2R_18620329_SNP [dm6]	T	A	1.223e^-4	0.66	DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20388340	2R_20388340_SNP [dm3] 2R_24500817_SNP [dm6]	T	G	1.224e^-4	0.66	UTR_3_PRIME Prosalpha4T2 UPSTREAM Ssl DOWNSTREAM Prosalpha4T2
2R	15677314	2R_15677314_SNP [dm3] 2R_19789809_SNP [dm6]	T	C	1.233e^-4	0.66	DOWNSTREAM CR45231 INTERGENIC
3R	8502211	3R_8502211_SNP [dm3] 3R_12676489_SNP [dm6]	G	T	1.238e^-4	0.66	UTR_3_PRIME mbo UPSTREAM CG43630 DOWNSTREAM CG6188
2R	18201784	2R_18201784_SNP [dm3] 2R_22314279_SNP [dm6]	A	C	1.238e^-4	0.66	INTRON CR44758
X	6743319	X_6743319_SNP [dm3] X_6849286_SNP [dm6]	C	A	1.240e^-4	0.66	SYNONYMOUS_CODING Cht11 UPSTREAM CG4558	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9084045	X_9084045_SNP [dm3] X_9190012_SNP [dm6]	G	A	1.248e^-4	0.66	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	20618287	X_20618287_INS [dm3] X_20747260_INS [dm6]	G	GTATG	1.251e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4996216	3R_4996216_SNP [dm3] 3R_9170494_SNP [dm6]	T	C	1.252e^-4	0.66	INTRON pum
3R	12312083	3R_12312083_SNP [dm3] 3R_16486361_SNP [dm6]	T	C	1.256e^-4	0.66	INTRON Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9431940	2L_9431940_SNP [dm3] 2L_9431940_SNP [dm6]	G	C	1.261e^-4	0.66	UPSTREAM FucTB INTRON scat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	13314704	3R_13314704_SNP [dm3] 3R_17488982_SNP [dm6]	A	G	1.261e^-4	0.66	INTRON Dscam3
2L	16230792	2L_16230792_SNP [dm3] 2L_16230792_SNP [dm6]	T	G	1.265e^-4	0.66	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	16575398	2L_16575398_SNP [dm3] 2L_16575398_SNP [dm6]	T	C	1.274e^-4	0.66	INTRON CG42389
2L	15383510	2L_15383510_SNP [dm3] 2L_15383510_SNP [dm6]	C	A	1.278e^-4	0.66	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6450302	2L_6450302_SNP [dm3] 2L_6450302_SNP [dm6]	A	G	1.281e^-4	0.66	INTRON retm
X	18737270	X_18737270_SNP [dm3] X_18843237_SNP [dm6]	G	A	1.282e^-4	0.66	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	12938488	3R_12938488_SNP [dm3] 3R_17112766_SNP [dm6]	G	C	1.286e^-4	0.66	INTRON cher	TF binding site mE1_TFBS_cnc
X	8900830	X_8900830_SNP [dm3] X_9006797_SNP [dm6]	C	T	1.291e^-4	0.66	INTRON rdgA & 1 other
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	1.292e^-4	0.66	INTRON ome	regulatory region REDfly_CRMs
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	1.292e^-4	0.66	INTRON Cad87A
2R	9139044	2R_9139044_SNP [dm3] 2R_13251539_SNP [dm6]	C	T	1.293e^-4	0.66	SYNONYMOUS_CODING CG4712 UTR_5_PRIME CG4712 DOWNSTREAM CG4714
2L	15217526	2L_15217526_SNP [dm3] 2L_15217526_SNP [dm6]	T	C	1.309e^-4	0.66	INTERGENIC	TF binding site mE1_TFBS_inv
X	18737157	X_18737157_SNP [dm3] X_18843124_SNP [dm6]	A	G	1.309e^-4	0.66	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	10687518	2L_10687518_SNP [dm3] 2L_10687518_SNP [dm6]	T	C	1.310e^-4	0.66	UPSTREAM CG7296 INTERGENIC
2L	9832124	2L_9832124_SNP [dm3] 2L_9832124_SNP [dm6]	T	G	1.312e^-4	0.66	INTRON nAChRalpha6
3R	18436141	3R_18436141_SNP [dm3] 3R_22610419_SNP [dm6]	T	C	1.326e^-4	0.66	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9152751	2R_9152751_INS [dm3] 2R_13265246_INS [dm6]	A	AA	1.326e^-4	0.66	DOWNSTREAM CG42319 INTRON CG42319
3R	4994902	3R_4994902_SNP [dm3] 3R_9169180_SNP [dm6]	A	C	1.328e^-4	0.66	INTRON pum
3R	8148240	3R_8148240_INS [dm3] 3R_12322518_INS [dm6]	T	TAT	1.333e^-4	0.66	DOWNSTREAM tRNA:CR31432 INTERGENIC
2L	11971538	2L_11971538_SNP [dm3] 2L_11971538_SNP [dm6]	G	T	1.337e^-4	0.66	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18204530	2R_18204530_SNP [dm3] 2R_22317025_SNP [dm6]	G	A	1.338e^-4	0.66	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18204582	2R_18204582_SNP [dm3] 2R_22317077_SNP [dm6]	T	C	1.338e^-4	0.66	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10703978	2L_10703978_SNP [dm3] 2L_10703978_SNP [dm6]	G	A	1.340e^-4	0.66	SYNONYMOUS_CODING CG6415 INTRON Lip2
3R	4996564	3R_4996564_SNP [dm3] 3R_9170842_SNP [dm6]	G	A	1.341e^-4	0.66	INTRON pum
3R	16572321	3R_16572321_SNP [dm3] 3R_20746599_SNP [dm6]	G	A	1.346e^-4	0.66	INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26405766	3R_26405766_SNP [dm3] 3R_30580044_SNP [dm6]	C	T	1.353e^-4	0.66	INTRON CG9702	TF binding site mE1_TFBS_HSA
3L	11605950	3L_11605950_SNP [dm3] 3L_11612850_SNP [dm6]	T	A	1.353e^-4	0.66	NON_SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_sens
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	1.355e^-4	0.66	INTRON 4EHP
2R	12405658	2R_12405658_SNP [dm3] 2R_16518153_SNP [dm6]	A	T	1.356e^-4	0.66	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	19482717	X_19482717_SNP [dm3] X_19588684_SNP [dm6]	A	G	1.360e^-4	0.66	INTRON CG14219
2L	15224192	2L_15224192_SNP [dm3] 2L_15224192_SNP [dm6]	A	C	1.360e^-4	0.66	INTERGENIC
2R	5652554	2R_5652554_SNP [dm3] 2R_9765049_SNP [dm6]	A	G	1.361e^-4	0.66	SYNONYMOUS_CODING trpl
3L	1288372	3L_1288372_SNP [dm3] 3L_1288372_SNP [dm6]	G	C	1.362e^-4	0.66	DOWNSTREAM CG32333 INTRON CG32333
X	17293395	X_17293395_SNP [dm3] X_17399362_SNP [dm6]	A	G	1.365e^-4	0.66	INTRON B-H1
2R	4417147	2R_4417147_SNP [dm3] 2R_8529642_SNP [dm6]	A	G	1.366e^-4	0.66	INTRON mtt
3L	12710993	3L_12710993_SNP [dm3] 3L_12717893_SNP [dm6]	A	T	1.368e^-4	0.66	INTERGENIC
2R	18203764	2R_18203764_SNP [dm3] 2R_22316259_SNP [dm6]	G	C	1.369e^-4	0.66	EXON CR44758
2R	18204250	2R_18204250_SNP [dm3] 2R_22316745_SNP [dm6]	G	A	1.369e^-4	0.66	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18205414	2R_18205414_SNP [dm3] 2R_22317909_SNP [dm6]	C	T	1.369e^-4	0.66	START_GAINED Gp150 UTR_5_PRIME Gp150 UPSTREAM Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18205608	2R_18205608_SNP [dm3] 2R_22318103_SNP [dm6]	T	C	1.369e^-4	0.66	UPSTREAM Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18205873	2R_18205873_SNP [dm3] 2R_22318368_SNP [dm6]	T	C	1.369e^-4	0.66	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18173056	2R_18173056_SNP [dm3] 2R_22285551_SNP [dm6]	C	T	1.380e^-4	0.66	UTR_3_PRIME dve	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15329804	2L_15329804_SNP [dm3] 2L_15329804_SNP [dm6]	A	G	1.382e^-4	0.66	INTERGENIC
2L	7211167	2L_7211167_SNP [dm3] 2L_7211167_SNP [dm6]	G	C	1.383e^-4	0.66	INTRON CG13784
2R	12314603	2R_12314603_SNP [dm3] 2R_16427098_SNP [dm6]	A	C	1.390e^-4	0.66	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18744073	2L_18744073_SNP [dm3] 2L_18744073_SNP [dm6]	A	T	1.391e^-4	0.66	INTERGENIC
3R	9434032	3R_9434032_SNP [dm3] 3R_13608310_SNP [dm6]	A	C	1.395e^-4	0.66	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
2R	12314589	2R_12314589_SNP [dm3] 2R_16427084_SNP [dm6]	T	G	1.397e^-4	0.66	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19126772	X_19126772_SNP [dm3] X_19232739_SNP [dm6]	T	A	1.399e^-4	0.66	NON_SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5838618	2L_5838618_SNP [dm3] 2L_5838618_SNP [dm6]	A	G	1.405e^-4	0.66	INTRON TrissinR
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	1.406e^-4	0.66	INTRON capu	TF binding site mE1_TFBS_bab1
2R	18212137	2R_18212137_SNP [dm3] 2R_22324632_SNP [dm6]	A	G	1.408e^-4	0.66	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7739255	X_7739255_SNP [dm3] X_7845222_SNP [dm6]	G	T	1.410e^-4	0.66	INTERGENIC
X	6835982	X_6835982_SNP [dm3] X_6941949_SNP [dm6]	C	T	1.412e^-4	0.66	INTRON CG14431
3R	12312142	3R_12312142_SNP [dm3] 3R_16486420_SNP [dm6]	G	A	1.415e^-4	0.66	INTRON Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15667671	2R_15667671_SNP [dm3] 2R_19780166_SNP [dm6]	C	T	1.419e^-4	0.66	INTERGENIC
X	19019729	X_19019729_SNP [dm3] X_19125696_SNP [dm6]	G	A	1.421e^-4	0.66	INTRON tgy
3R	25823914	3R_25823914_SNP [dm3] 3R_29998192_SNP [dm6]	C	T	1.425e^-4	0.66	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13314802	3R_13314802_SNP [dm3] 3R_17489080_SNP [dm6]	A	G	1.429e^-4	0.66	INTRON Dscam3
3L	9420055	3L_9420055_SNP [dm3] 3L_9426955_SNP [dm6]	G	C	1.434e^-4	0.66	UPSTREAM Shc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	10057286	3R_10057286_SNP [dm3] 3R_14231564_SNP [dm6]	C	A	1.435e^-4	0.66	INTERGENIC
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	1.440e^-4	0.66	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18203635	2R_18203635_SNP [dm3] 2R_22316130_SNP [dm6]	C	G	1.444e^-4	0.66	INTRON CR44758
3L	12712208	3L_12712208_SNP [dm3] 3L_12719108_SNP [dm6]	G	A	1.444e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
2R	13022082	2R_13022082_SNP [dm3] 2R_17134577_SNP [dm6]	C	T	1.445e^-4	0.66	NON_SYNONYMOUS_CODING CG11400 DOWNSTREAM Acp54A1
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	1.446e^-4	0.66	INTRON salm
3L	17591663	3L_17591663_SNP [dm3] 3L_17598563_SNP [dm6]	G	A	1.448e^-4	0.66	INTRON Eip74EF
2L	5266324	2L_5266324_SNP [dm3] 2L_5266324_SNP [dm6]	C	A	1.453e^-4	0.66	UPSTREAM Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2L	12748485	2L_12748485_SNP [dm3] 2L_12748485_SNP [dm6]	A	G	1.455e^-4	0.66	INTERGENIC
2L	14582315	2L_14582315_SNP [dm3] 2L_14582315_SNP [dm6]	T	C	1.463e^-4	0.66	INTERGENIC
3R	23673628	3R_23673628_SNP [dm3] 3R_27847906_SNP [dm6]	C	T	1.465e^-4	0.66	DOWNSTREAM Or98a INTRON CG34353
3R	13315678	3R_13315678_SNP [dm3] 3R_17489956_SNP [dm6]	G	C	1.466e^-4	0.66	INTRON Dscam3
3L	12712183	3L_12712183_DEL [dm3] 3L_12719083_DEL [dm6]	TGACT	T	1.471e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
3L	1124981	3L_1124981_SNP [dm3] 3L_1124981_SNP [dm6]	A	C	1.472e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs
2R	8121023	2R_8121023_DEL [dm3] 2R_12233518_DEL [dm6]	TT	T	1.480e^-4	0.66	DOWNSTREAM CR44313 INTERGENIC
3L	15673515	3L_15673515_SNP [dm3] 3L_15680415_SNP [dm6]	T	C	1.488e^-4	0.66	SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
2R	6270185	2R_6270185_SNP [dm3] 2R_10382680_SNP [dm6]	A	G	1.492e^-4	0.66	INTRON CG42732	TF binding site mE1_TFBS_sbb
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	1.498e^-4	0.66	INTRON Ac76E
3R	18025995	3R_18025995_SNP [dm3] 3R_22200273_SNP [dm6]	C	T	1.499e^-4	0.66	INTRON SKIP & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20380600	2R_20380600_SNP [dm3] 2R_24493077_SNP [dm6]	A	G	1.500e^-4	0.66	UPSTREAM CG13589 DOWNSTREAM CG13590 INTERGENIC
3R	12747456	3R_12747456_SNP [dm3] 3R_16921734_SNP [dm6]	T	G	1.501e^-4	0.66	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8692440	3L_8692440_DEL [dm3] 3L_8699340_DEL [dm6]	TT	T	1.504e^-4	0.66	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6401508	3R_6401508_SNP [dm3] 3R_10575786_SNP [dm6]	A	C	1.510e^-4	0.66	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5639096	2L_5639096_SNP [dm3] 2L_5639096_SNP [dm6]	C	T	1.510e^-4	0.66	INTRON CG31646
2R	12314581	2R_12314581_SNP [dm3] 2R_16427076_SNP [dm6]	G	T	1.511e^-4	0.66	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3217125	3R_3217125_SNP [dm3] 3R_7391403_SNP [dm6]	C	T	1.525e^-4	0.66	UPSTREAM CG42650 INTERGENIC
2L	3969901	2L_3969901_SNP [dm3] 2L_3969901_SNP [dm6]	C	T	1.526e^-4	0.66	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7354222	2L_7354222_SNP [dm3] 2L_7354222_SNP [dm6]	C	T	1.529e^-4	0.66	INTERGENIC
3R	8462437	3R_8462437_SNP [dm3] 3R_12636715_SNP [dm6]	A	G	1.531e^-4	0.66	DOWNSTREAM CG11598 INTRON CG11600
X	9742758	X_9742758_SNP [dm3] X_9848725_SNP [dm6]	A	T	1.532e^-4	0.66	INTRON CG32698
3R	23673631	3R_23673631_SNP [dm3] 3R_27847909_SNP [dm6]	A	T	1.535e^-4	0.66	DOWNSTREAM Or98a INTRON CG34353
3R	13292590	3R_13292590_SNP [dm3] 3R_17466868_SNP [dm6]	C	T	1.537e^-4	0.66	INTERGENIC
2R	8425406	2R_8425406_SNP [dm3] 2R_12537901_SNP [dm6]	C	T	1.539e^-4	0.66	INTRON fra
2R	11981512	2R_11981512_SNP [dm3] 2R_16094007_SNP [dm6]	C	A	1.546e^-4	0.66	INTRON Dg	TF binding site BDTNP1_TFBS_twi
2L	14693079	2L_14693079_SNP [dm3] 2L_14693079_SNP [dm6]	C	T	1.546e^-4	0.66	INTERGENIC
3L	7297226	3L_7297226_SNP [dm3] 3L_7304126_SNP [dm6]	A	G	1.548e^-4	0.66	INTRON unc-13-4A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18183508	2R_18183508_SNP [dm3] 2R_22296003_SNP [dm6]	A	C	1.550e^-4	0.66	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2R	8728850	2R_8728850_SNP [dm3] 2R_12841345_SNP [dm6]	T	G	1.550e^-4	0.66	NON_SYNONYMOUS_CODING Cyp9h1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19258815	3R_19258815_SNP [dm3] 3R_23433093_SNP [dm6]	T	C	1.560e^-4	0.66	INTRON CG4374
X	13609326	X_13609326_SNP [dm3] X_13715293_SNP [dm6]	G	T	1.561e^-4	0.66	SYNONYMOUS_CODING NnaD DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
2R	18197580	2R_18197580_SNP [dm3] 2R_22310075_SNP [dm6]	C	T	1.567e^-4	0.66	UPSTREAM wdp INTRON wdp
2R	10684243	2R_10684243_SNP [dm3] 2R_14796738_SNP [dm6]	C	G	1.571e^-4	0.66	INTRON kn
2R	11982058	2R_11982058_SNP [dm3] 2R_16094553_SNP [dm6]	T	A	1.574e^-4	0.66	INTRON Dg	TF binding site BDTNP1_TFBS_twi
2L	1451831	2L_1451831_SNP [dm3] 2L_1451831_SNP [dm6]	G	T	1.578e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3969900	2L_3969900_SNP [dm3] 2L_3969900_SNP [dm6]	T	C	1.579e^-4	0.66	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17815507	3L_17815507_SNP [dm3] 3L_17822407_SNP [dm6]	A	T	1.580e^-4	0.66	UPSTREAM Grd INTRON Ir75c
2R	20148580	2R_20148580_SNP [dm3] 2R_24261057_SNP [dm6]	G	A	1.583e^-4	0.66	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8350195	2R_8350195_SNP [dm3] 2R_12462690_SNP [dm6]	T	C	1.590e^-4	0.66	INTRON Lac
3L	22249756	3L_22249756_SNP [dm3] 3L_22256656_SNP [dm6]	T	C	1.593e^-4	0.66	INTERGENIC
2R	20371145	2R_20371145_SNP [dm3] 2R_24483622_SNP [dm6]	A	G	1.593e^-4	0.66	INTRON CG13579
2R	4421074	2R_4421074_SNP [dm3] 2R_8533569_SNP [dm6]	G	A	1.595e^-4	0.66	INTERGENIC
2R	10269580	2R_10269580_SNP [dm3] 2R_14382075_SNP [dm6]	G	A	1.599e^-4	0.66	INTRON Dh44-R1
2L	15196932	2L_15196932_SNP [dm3] 2L_15196932_SNP [dm6]	G	C	1.607e^-4	0.66	INTRON CG4168
X	20319117	X_20319117_SNP [dm3] X_20448090_SNP [dm6]	G	T	1.609e^-4	0.66	INTERGENIC
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	1.610e^-4	0.66	INTRON SP2637	TF binding site BDTNP1_TFBS_da
3R	14342272	3R_14342272_SNP [dm3] 3R_18516550_SNP [dm6]	A	T	1.612e^-4	0.66	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	529905	2L_529905_SNP [dm3] 2L_529905_SNP [dm6]	T	G	1.616e^-4	0.66	INTRON ush	regulatory region REDfly_CRMs
2R	6270278	2R_6270278_SNP [dm3] 2R_10382773_SNP [dm6]	A	G	1.618e^-4	0.66	INTRON CG42732
2L	4621277	2L_4621277_SNP [dm3] 2L_4621277_SNP [dm6]	G	T	1.623e^-4	0.66	DOWNSTREAM CR44609 INTERGENIC
2L	1482564	2L_1482564_SNP [dm3] 2L_1482564_SNP [dm6]	A	G	1.629e^-4	0.66	INTERGENIC
3R	4989157	3R_4989157_SNP [dm3] 3R_9163435_SNP [dm6]	C	A	1.637e^-4	0.66	INTRON pum	TF binding site mE1_TFBS_zfh1
3R	23776547	3R_23776547_SNP [dm3] 3R_27950825_SNP [dm6]	T	C	1.639e^-4	0.66	INTRON Gp93	TF binding site mE1_TFBS_cad
2L	12727468	2L_12727468_SNP [dm3] 2L_12727468_SNP [dm6]	G	A	1.642e^-4	0.66	INTRON MRP
2R	15667655	2R_15667655_SNP [dm3] 2R_19780150_SNP [dm6]	A	T	1.642e^-4	0.66	INTERGENIC
3R	2731956	3R_2731956_SNP [dm3] 3R_6906234_SNP [dm6]	C	A	1.643e^-4	0.66	DOWNSTREAM Antp INTRON Antp
2R	14606718	2R_14606718_SNP [dm3] 2R_18719213_SNP [dm6]	G	A	1.648e^-4	0.66	UPSTREAM mir-4982 INTRON Hs3st-A
3L	17316868	3L_17316868_SNP [dm3] 3L_17323768_SNP [dm6]	C	A	1.655e^-4	0.66	NON_SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725
X	18061412	X_18061412_SNP [dm3] X_18167379_SNP [dm6]	C	T	1.659e^-4	0.66	INTRON Frq1
X	7878453	X_7878453_SNP [dm3] X_7984420_SNP [dm6]	C	G	1.670e^-4	0.66	INTRON sn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18204592	2R_18204592_SNP [dm3] 2R_22317087_SNP [dm6]	G	C	1.676e^-4	0.66	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	23777842	3R_23777842_SNP [dm3] 3R_27952120_SNP [dm6]	C	A	1.687e^-4	0.66	UTR_3_PRIME Gp93 & 1 other DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad
3R	19072017	3R_19072017_DEL [dm3] 3R_23246295_DEL [dm6]	GATAG	G	1.687e^-4	0.66	INTRON CG4467
3L	15688628	3L_15688628_SNP [dm3] 3L_15695528_SNP [dm6]	G	C	1.693e^-4	0.66	INTERGENIC
3L	8820239	3L_8820239_SNP [dm3] 3L_8827139_SNP [dm6]	A	G	1.697e^-4	0.66	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	8369209	3R_8369209_SNP [dm3] 3R_12543487_SNP [dm6]	C	A	1.702e^-4	0.66	INTRON Octbeta3R
2R	14533250	2R_14533250_SNP [dm3] 2R_18645745_SNP [dm6]	A	C	1.703e^-4	0.66	INTRON SP2637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26098622	3R_26098622_SNP [dm3] 3R_30272900_SNP [dm6]	T	G	1.703e^-4	0.66	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	1.710e^-4	0.66	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16140623	2R_16140623_SNP [dm3] 2R_20253118_SNP [dm6]	C	G	1.716e^-4	0.66	INTRON CG9864
3R	5000946	3R_5000946_INS [dm3] 3R_9175224_INS [dm6]	A	AA	1.717e^-4	0.66	INTRON pum
2R	7557872	2R_7557872_SNP [dm3] 2R_11670367_SNP [dm6]	C	T	1.726e^-4	0.66	INTRON Roc2 & 1 other
X	15189378	X_15189378_SNP [dm3] X_15295345_SNP [dm6]	A	T	1.730e^-4	0.66	NON_SYNONYMOUS_CODING CG5877	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	12746999	3R_12746999_SNP [dm3] 3R_16921277_SNP [dm6]	C	A	1.732e^-4	0.66	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	16085006	3R_16085006_SNP [dm3] 3R_20259284_SNP [dm6]	C	T	1.734e^-4	0.66	INTRON cic
2R	20405011	2R_20405011_SNP [dm3] 2R_24517488_SNP [dm6]	A	C	1.735e^-4	0.66	UPSTREAM Ir60c DOWNSTREAM Ir60b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	1.737e^-4	0.66	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4047994	2L_4047994_SNP [dm3] 2L_4047994_SNP [dm6]	T	A	1.742e^-4	0.66	INTRON ed	TF binding site mE1_TFBS_chinmo
3R	19068329	3R_19068329_SNP [dm3] 3R_23242607_SNP [dm6]	A	C	1.743e^-4	0.66	INTRON CG4467
2L	12727443	2L_12727443_SNP [dm3] 2L_12727443_SNP [dm6]	T	C	1.748e^-4	0.66	INTRON MRP
2R	13129912	2R_13129912_SNP [dm3] 2R_17242407_SNP [dm6]	C	T	1.748e^-4	0.66	INTRON mbl
2R	5660841	2R_5660841_SNP [dm3] 2R_9773336_SNP [dm6]	G	C	1.754e^-4	0.66	INTRON CG1688
3L	2606037	3L_2606037_SNP [dm3] 3L_2606037_SNP [dm6]	C	G	1.759e^-4	0.66	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	1.763e^-4	0.66	DOWNSTREAM CG15483 INTERGENIC
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	1.764e^-4	0.66	INTERGENIC
X	9602947	X_9602947_SNP [dm3] X_9708914_SNP [dm6]	C	T	1.766e^-4	0.66	INTERGENIC
2L	2096576	2L_2096576_SNP [dm3] 2L_2096576_SNP [dm6]	G	T	1.779e^-4	0.66	INTRON dpr3
2L	529954	2L_529954_SNP [dm3] 2L_529954_SNP [dm6]	T	C	1.781e^-4	0.66	INTRON ush	regulatory region REDfly_CRMs
2L	17358937	2L_17358937_SNP [dm3] 2L_17358937_SNP [dm6]	C	A	1.783e^-4	0.66	INTERGENIC
3L	12710978	3L_12710978_DEL [dm3] 3L_12717878_DEL [dm6]	TTACT	T	1.785e^-4	0.66	INTERGENIC
3L	14154826	3L_14154826_SNP [dm3] 3L_14161726_SNP [dm6]	T	G	1.790e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs
2L	22208089	2L_22208089_DEL [dm3] 2L_22208089_DEL [dm6]	AA	A	1.791e^-4	0.66	INTRON Ir40a	transposable element FlyBase
3L	8100732	3L_8100732_SNP [dm3] 3L_8107632_SNP [dm6]	C	T	1.791e^-4	0.66	INTRON Ect4	TF binding site BDTNP1_TFBS_twi
2R	8333216	2R_8333216_SNP [dm3] 2R_12445711_SNP [dm6]	A	T	1.791e^-4	0.66	INTRON Dyb
2L	5460407	2L_5460407_SNP [dm3] 2L_5460407_SNP [dm6]	A	G	1.791e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6448466	2R_6448466_SNP [dm3] 2R_10560961_SNP [dm6]	G	T	1.799e^-4	0.66	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10037525	3R_10037525_SNP [dm3] 3R_14211803_SNP [dm6]	C	G	1.803e^-4	0.66	INTRON Dop1R1
2L	18744065	2L_18744065_SNP [dm3] 2L_18744065_SNP [dm6]	G	A	1.804e^-4	0.66	INTERGENIC
3R	5422635	3R_5422635_SNP [dm3] 3R_9596913_SNP [dm6]	A	T	1.805e^-4	0.66	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9138962	2R_9138962_SNP [dm3] 2R_13251457_SNP [dm6]	A	G	1.808e^-4	0.66	NON_SYNONYMOUS_CODING CG4712 SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
X	15160301	X_15160301_SNP [dm3] X_15266268_SNP [dm6]	C	G	1.811e^-4	0.66	INTERGENIC
2L	2757071	2L_2757071_SNP [dm3] 2L_2757071_SNP [dm6]	T	C	1.814e^-4	0.66	UTR_3_PRIME Bacc DOWNSTREAM Bacc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	16260408	2L_16260408_SNP [dm3] 2L_16260408_SNP [dm6]	G	A	1.818e^-4	0.66	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
2R	19371343	2R_19371343_SNP [dm3] 2R_23483820_SNP [dm6]	G	A	1.827e^-4	0.66	INTRON CG43795	TF binding site mE1_TFBS_chinmo
X	19679511	X_19679511_SNP [dm3] X_19785478_SNP [dm6]	A	C	1.828e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11903898	2L_11903898_SNP [dm3] 2L_11903898_SNP [dm6]	C	T	1.833e^-4	0.66	INTRON Pde1c
3R	19076757	3R_19076757_SNP [dm3] 3R_23251035_SNP [dm6]	A	T	1.833e^-4	0.66	SYNONYMOUS_CODING CG4449 UPSTREAM EloA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	9385130	3R_9385130_SNP [dm3] 3R_13559408_SNP [dm6]	C	G	1.836e^-4	0.66	INTERGENIC
2R	18187176	2R_18187176_SNP [dm3] 2R_22299671_SNP [dm6]	A	C	1.837e^-4	0.66	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7684261	2L_7684261_SNP [dm3] 2L_7684261_SNP [dm6]	A	G	1.838e^-4	0.66	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
X	8026221	X_8026221_SNP [dm3] X_8132188_SNP [dm6]	G	A	1.842e^-4	0.66	UPSTREAM CG10958 DOWNSTREAM CG2116 INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	529967	2L_529967_SNP [dm3] 2L_529967_SNP [dm6]	T	G	1.843e^-4	0.66	INTRON ush	regulatory region REDfly_CRMs
2R	6386315	2R_6386315_SNP [dm3] 2R_10498810_SNP [dm6]	C	A	1.843e^-4	0.66	INTRON lola
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	1.853e^-4	0.66	INTERGENIC
2L	1481152	2L_1481152_SNP [dm3] 2L_1481152_SNP [dm6]	G	A	1.853e^-4	0.66	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16407679	2R_16407679_SNP [dm3] 2R_20520174_SNP [dm6]	G	A	1.857e^-4	0.66	INTERGENIC
2R	18199945	2R_18199945_SNP [dm3] 2R_22312440_SNP [dm6]	C	G	1.865e^-4	0.66	UPSTREAM CR44758 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4169369	3L_4169369_SNP [dm3] 3L_4169369_SNP [dm6]	G	A	1.865e^-4	0.66	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	12747534	3R_12747534_SNP [dm3] 3R_16921812_SNP [dm6]	G	T	1.867e^-4	0.66	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9812541	2L_9812541_SNP [dm3] 2L_9812541_SNP [dm6]	A	G	1.871e^-4	0.66	INTRON nAChRalpha6
2R	4009254	2R_4009254_SNP [dm3] 2R_8121749_SNP [dm6]	A	T	1.872e^-4	0.66	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10314969	3L_10314969_SNP [dm3] 3L_10321869_SNP [dm6]	A	G	1.872e^-4	0.66	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8900489	X_8900489_SNP [dm3] X_9006456_SNP [dm6]	T	C	1.875e^-4	0.66	INTRON rdgA & 1 other
2R	20382745	2R_20382745_SNP [dm3] 2R_24495222_SNP [dm6]	G	A	1.878e^-4	0.66	NON_SYNONYMOUS_CODING Crtp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18163704	3R_18163704_SNP [dm3] 3R_22337982_SNP [dm6]	C	A	1.879e^-4	0.66	INTRON CG5388
X	19020008	X_19020008_SNP [dm3] X_19125975_SNP [dm6]	T	A	1.885e^-4	0.66	INTRON tgy
X	18737017	X_18737017_SNP [dm3] X_18842984_SNP [dm6]	A	T	1.895e^-4	0.66	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	4499472	X_4499472_INS [dm3] X_4605439_INS [dm6]	T	TT	1.895e^-4	0.66	INTRON CR32773
2R	14354828	2R_14354828_SNP [dm3] 2R_18467323_SNP [dm6]	G	A	1.897e^-4	0.66	INTRON CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	1.898e^-4	0.66	INTERGENIC
2L	14693633	2L_14693633_SNP [dm3] 2L_14693633_SNP [dm6]	G	A	1.904e^-4	0.66	INTERGENIC
3L	4346276	3L_4346276_INS [dm3] 3L_4346276_INS [dm6]	T	TT	1.913e^-4	0.66	UPSTREAM Cip4 INTRON Cip4 EXON CR45156
3R	18615373	3R_18615373_SNP [dm3] 3R_22789651_SNP [dm6]	A	G	1.921e^-4	0.66	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15769337	3R_15769337_SNP [dm3] 3R_19943615_SNP [dm6]	A	C	1.923e^-4	0.66	INTRON Hs6st
3R	16694755	3R_16694755_SNP [dm3] 3R_20869033_SNP [dm6]	A	C	1.925e^-4	0.66	INTERGENIC
X	18737023	X_18737023_SNP [dm3] X_18842990_SNP [dm6]	T	G	1.927e^-4	0.66	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3L	15678690	3L_15678690_SNP [dm3] 3L_15685590_SNP [dm6]	A	T	1.930e^-4	0.66	DOWNSTREAM CG34452 INTRON pgant8	TF binding site mE1_TFBS_inv
2R	18206838	2R_18206838_SNP [dm3] 2R_22319333_SNP [dm6]	C	T	1.931e^-4	0.66	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	18207088	2R_18207088_SNP [dm3] 2R_22319583_SNP [dm6]	C	T	1.931e^-4	0.66	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12424956	3L_12424956_SNP [dm3] 3L_12431856_SNP [dm6]	C	A	1.934e^-4	0.66	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	13606673	X_13606673_SNP [dm3] X_13712640_SNP [dm6]	G	T	1.937e^-4	0.66	SYNONYMOUS_CODING NnaD INTRON CG9940
2L	11287108	2L_11287108_SNP [dm3] 2L_11287108_SNP [dm6]	A	T	1.939e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13655193	3L_13655193_SNP [dm3] 3L_13662093_SNP [dm6]	G	C	1.940e^-4	0.66	INTRON bru-3
3L	14154788	3L_14154788_SNP [dm3] 3L_14161688_SNP [dm6]	G	C	1.941e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs
3L	1270185	3L_1270185_SNP [dm3] 3L_1270185_SNP [dm6]	T	G	1.944e^-4	0.66	INTRON CG9134
3L	7307498	3L_7307498_SNP [dm3] 3L_7314398_SNP [dm6]	A	G	1.945e^-4	0.66	INTERGENIC
2R	6276708	2R_6276708_SNP [dm3] 2R_10389203_SNP [dm6]	A	T	1.960e^-4	0.66	INTRON CG42732
2L	4911560	2L_4911560_SNP [dm3] 2L_4911560_SNP [dm6]	C	T	1.966e^-4	0.66	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16296003	X_16296003_SNP [dm3] X_16401970_SNP [dm6]	C	T	1.967e^-4	0.66	SYNONYMOUS_CODING CG9981
3R	18163710	3R_18163710_SNP [dm3] 3R_22337988_SNP [dm6]	T	G	1.967e^-4	0.66	INTRON CG5388
2R	7170587	2R_7170587_SNP [dm3] 2R_11283082_SNP [dm6]	T	G	1.971e^-4	0.66	SYNONYMOUS_CODING CG9062	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2L	2205538	2L_2205538_SNP [dm3] 2L_2205538_SNP [dm6]	C	G	1.978e^-4	0.66	SYNONYMOUS_CODING CG31668 DOWNSTREAM CG33124
X	15227105	X_15227105_SNP [dm3] X_15333072_SNP [dm6]	A	G	1.980e^-4	0.66	START_GAINED CG9114 UTR_5_PRIME CG9114 UPSTREAM HDAC6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21855623	3R_21855623_SNP [dm3] 3R_26029901_SNP [dm6]	T	A	1.981e^-4	0.66	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18206458	2R_18206458_SNP [dm3] 2R_22318953_SNP [dm6]	C	T	1.982e^-4	0.66	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4189099	3R_4189099_SNP [dm3] 3R_8363377_SNP [dm6]	C	A	1.982e^-4	0.66	SYNONYMOUS_CODING CG7963 UPSTREAM CG9684 DOWNSTREAM CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9824316	3L_9824316_SNP [dm3] 3L_9831216_SNP [dm6]	T	C	1.983e^-4	0.66	NON_SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	1.983e^-4	0.66	INTRON NaPi-T
2R	18769753	2R_18769753_SNP [dm3] 2R_22882230_SNP [dm6]	G	A	1.988e^-4	0.66	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20319600	X_20319600_SNP [dm3] X_20448573_SNP [dm6]	G	A	1.989e^-4	0.66	UPSTREAM CG32506 INTERGENIC
3R	22134010	3R_22134010_SNP [dm3] 3R_26308288_SNP [dm6]	G	C	1.994e^-4	0.66	INTERGENIC
3R	9727800	3R_9727800_SNP [dm3] 3R_13902078_SNP [dm6]	C	A	1.997e^-4	0.66	UTR_5_PRIME ems	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12424979	3L_12424979_SNP [dm3] 3L_12431879_SNP [dm6]	A	C	1.998e^-4	0.66	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	3217092	3R_3217092_SNP [dm3] 3R_7391370_SNP [dm6]	A	C	2.000e^-4	0.66	UPSTREAM CG42650 INTERGENIC
2R	18187200	2R_18187200_SNP [dm3] 2R_22299695_SNP [dm6]	A	G	2.003e^-4	0.66	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15509352	2L_15509352_SNP [dm3] 2L_15509352_SNP [dm6]	T	G	2.011e^-4	0.662	INTERGENIC
2L	11287105	2L_11287105_SNP [dm3] 2L_11287105_SNP [dm6]	A	C	2.023e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4998137	3R_4998137_SNP [dm3] 3R_9172415_SNP [dm6]	T	A	2.028e^-4	0.665	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	2.048e^-4	0.667	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	11072233	X_11072233_SNP [dm3] X_11178200_SNP [dm6]	G	T	2.048e^-4	0.667	INTERGENIC
3R	17409259	3R_17409259_SNP [dm3] 3R_21583537_SNP [dm6]	G	A	2.051e^-4	0.667	INTRON InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	18560093	3L_18560093_SNP [dm3] 3L_18566993_SNP [dm6]	T	A	2.052e^-4	0.667	INTRON AstC-R1
2L	1484772	2L_1484772_SNP [dm3] 2L_1484772_SNP [dm6]	C	G	2.054e^-4	0.667	INTERGENIC
2L	1628224	2L_1628224_SNP [dm3] 2L_1628224_SNP [dm6]	C	T	2.060e^-4	0.667	INTERGENIC
2L	4911554	2L_4911554_SNP [dm3] 2L_4911554_SNP [dm6]	C	A	2.072e^-4	0.667	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9686515	3R_9686515_SNP [dm3] 3R_13860793_SNP [dm6]	T	G	2.073e^-4	0.667	INTERGENIC
3R	12746780	3R_12746780_SNP [dm3] 3R_16921058_SNP [dm6]	C	A	2.074e^-4	0.667	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	13680766	2L_13680766_SNP [dm3] 2L_13680766_SNP [dm6]	C	T	2.081e^-4	0.667	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3R	20351934	3R_20351934_SNP [dm3] 3R_24526212_SNP [dm6]	C	A	2.084e^-4	0.667	INTRON CG13618
X	18173326	X_18173326_SNP [dm3] X_18279293_SNP [dm6]	T	A	2.086e^-4	0.667	INTRON upd3	TF binding site mE1_TFBS_chinmo
2L	11889601	2L_11889601_SNP [dm3] 2L_11889601_SNP [dm6]	C	A	2.088e^-4	0.667	INTRON Pde1c
X	13797214	X_13797214_SNP [dm3] X_13903181_SNP [dm6]	G	A	2.089e^-4	0.667	INTRON mamo
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	2.094e^-4	0.667	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18737254	X_18737254_SNP [dm3] X_18843221_SNP [dm6]	T	C	2.097e^-4	0.667	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	11407350	2L_11407350_SNP [dm3] 2L_11407350_SNP [dm6]	T	C	2.102e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs
3L	17579955	3L_17579955_SNP [dm3] 3L_17586855_SNP [dm6]	A	G	2.108e^-4	0.667	INTRON Eip74EF
3L	14283118	3L_14283118_SNP [dm3] 3L_14290018_SNP [dm6]	T	C	2.114e^-4	0.667	INTRON fz
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	2.114e^-4	0.667	INTRON kar	TF binding site mE1_TFBS_cad
3L	6568776	3L_6568776_SNP [dm3] 3L_6575676_SNP [dm6]	T	C	2.118e^-4	0.667	INTRON CG18769 & 1 other
X	18737186	X_18737186_SNP [dm3] X_18843153_SNP [dm6]	A	G	2.125e^-4	0.667	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18737240	X_18737240_SNP [dm3] X_18843207_SNP [dm6]	A	T	2.125e^-4	0.667	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	6278651	2L_6278651_INS [dm3] 2L_6278651_INS [dm6]	T	TTCT	2.128e^-4	0.667	INTRON Ddr
3R	10915247	3R_10915247_SNP [dm3] 3R_15089525_SNP [dm6]	G	C	2.131e^-4	0.667	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	745579	2L_745579_SNP [dm3] 2L_745579_SNP [dm6]	C	A	2.134e^-4	0.667	INTERGENIC
3L	4080538	3L_4080538_SNP [dm3] 3L_4080538_SNP [dm6]	C	A	2.138e^-4	0.667	INTRON Gad1
2R	18204590	2R_18204590_SNP [dm3] 2R_22317085_SNP [dm6]	T	G	2.143e^-4	0.667	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	8582023	X_8582023_SNP [dm3] X_8687990_SNP [dm6]	A	T	2.150e^-4	0.667	DOWNSTREAM Ppt1 INTRON CG11284
3R	9493737	3R_9493737_SNP [dm3] 3R_13668015_SNP [dm6]	A	G	2.154e^-4	0.667	UTR_3_PRIME Task6
3L	5630286	3L_5630286_SNP [dm3] 3L_5637186_SNP [dm6]	C	T	2.155e^-4	0.667	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3752906	3R_3752906_SNP [dm3] 3R_7927184_SNP [dm6]	C	T	2.156e^-4	0.667	INTRON dsx
X	20920568	X_20920568_SNP [dm3] X_21049541_SNP [dm6]	A	C	2.156e^-4	0.667	DOWNSTREAM CG1518 & 1 other INTERGENIC
2R	18179972	2R_18179972_SNP [dm3] 2R_22292467_SNP [dm6]	C	A	2.161e^-4	0.667	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
3R	6401284	3R_6401284_SNP [dm3] 3R_10575562_SNP [dm6]	C	G	2.162e^-4	0.667	INTRON hth	TF binding site mE1_TFBS_HSA
2R	1778731	2R_1778731_SNP [dm3] 2R_5891226_SNP [dm6]	T	C	2.163e^-4	0.667	INTERGENIC
3R	12746790	3R_12746790_SNP [dm3] 3R_16921068_SNP [dm6]	G	A	2.165e^-4	0.667	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9318056	X_9318056_SNP [dm3] X_9424023_SNP [dm6]	C	G	2.170e^-4	0.667	INTRON mgl
X	3207705	X_3207705_SNP [dm3] X_3313672_SNP [dm6]	A	G	2.179e^-4	0.669	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc & 1 other
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	2.183e^-4	0.669	INTRON CR45668	TF binding site mE1_TFBS_zfh1
3L	1080045	3L_1080045_SNP [dm3] 3L_1080045_SNP [dm6]	C	G	2.187e^-4	0.669	INTRON bab1	TF binding site mE1_TFBS_chinmo
X	11951946	X_11951946_SNP [dm3] X_12057913_SNP [dm6]	G	C	2.193e^-4	0.669	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo
3R	2714565	3R_2714565_SNP [dm3] 3R_6888843_SNP [dm6]	T	A	2.197e^-4	0.669	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14605321	2R_14605321_SNP [dm3] 2R_18717816_SNP [dm6]	C	T	2.198e^-4	0.669	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14693075	2L_14693075_SNP [dm3] 2L_14693075_SNP [dm6]	C	A	2.200e^-4	0.669	INTERGENIC
2L	15466105	2L_15466105_SNP [dm3] 2L_15466105_SNP [dm6]	A	T	2.206e^-4	0.669	INTERGENIC
2R	20364562	2R_20364562_SNP [dm3] 2R_24477039_SNP [dm6]	G	A	2.207e^-4	0.669	INTRON CG13579
2R	20371220	2R_20371220_SNP [dm3] 2R_24483697_SNP [dm6]	G	A	2.229e^-4	0.669	INTRON CG13579
3L	3999204	3L_3999204_SNP [dm3] 3L_3999204_SNP [dm6]	A	T	2.233e^-4	0.669	INTERGENIC
3R	4997466	3R_4997466_SNP [dm3] 3R_9171744_SNP [dm6]	A	T	2.234e^-4	0.669	INTRON pum
3R	14659764	3R_14659764_SNP [dm3] 3R_18834042_SNP [dm6]	T	A	2.235e^-4	0.669	INTRON CG18208
2R	9143032	2R_9143032_INS [dm3] 2R_13255527_INS [dm6]	T	TATTT	2.235e^-4	0.669	UPSTREAM CR44343 INTERGENIC
2L	16383992	2L_16383992_SNP [dm3] 2L_16383992_SNP [dm6]	A	G	2.235e^-4	0.669	INTERGENIC
X	11199026	X_11199026_SNP [dm3] X_11304993_SNP [dm6]	T	C	2.236e^-4	0.669	INTERGENIC
2L	18641176	2L_18641176_SNP [dm3] 2L_18641176_SNP [dm6]	G	C	2.243e^-4	0.669	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10680858	2R_10680858_SNP [dm3] 2R_14793353_SNP [dm6]	A	T	2.244e^-4	0.669	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7684379	2L_7684379_SNP [dm3] 2L_7684379_SNP [dm6]	T	C	2.259e^-4	0.669	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
X	21839966	X_21839966_SNP [dm3] X_22438131_SNP [dm6]	A	T	2.265e^-4	0.669	INTERGENIC	transposable element FlyBase
X	13609050	X_13609050_SNP [dm3] X_13715017_SNP [dm6]	C	T	2.273e^-4	0.669	DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo
2L	1451818	2L_1451818_SNP [dm3] 2L_1451818_SNP [dm6]	A	C	2.275e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15673300	3L_15673300_SNP [dm3] 3L_15680200_SNP [dm6]	T	G	2.275e^-4	0.669	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
2R	20403845	2R_20403845_SNP [dm3] 2R_24516322_SNP [dm6]	A	T	2.276e^-4	0.669	NON_SYNONYMOUS_CODING Ir60b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11006259	3L_11006259_SNP [dm3] 3L_11013159_SNP [dm6]	T	C	2.277e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2638632	3L_2638632_SNP [dm3] 3L_2638632_SNP [dm6]	G	A	2.280e^-4	0.669	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8679939	X_8679939_SNP [dm3] X_8785906_SNP [dm6]	C	A	2.283e^-4	0.669	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	4991494	3R_4991494_INS [dm3] 3R_9165772_INS [dm6]	A	ACAAACGTTACAA...	2.286e^-4	0.669	INTRON pum
3L	9496260	3L_9496260_SNP [dm3] 3L_9503160_SNP [dm6]	T	C	2.288e^-4	0.669	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17304795	2R_17304795_DEL [dm3] 2R_21417290_DEL [dm6]	TGTTGTAGAAACGAATGTTC...	T	2.289e^-4	0.669	UPSTREAM Sdc INTRON Sdc
2L	5180502	2L_5180502_SNP [dm3] 2L_5180502_SNP [dm6]	G	C	2.293e^-4	0.669	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	8111017	2R_8111017_SNP [dm3] 2R_12223512_SNP [dm6]	G	C	2.295e^-4	0.669	DOWNSTREAM CG8854 INTERGENIC
X	9222216	X_9222216_SNP [dm3] X_9328183_SNP [dm6]	T	C	2.295e^-4	0.669	SYNONYMOUS_CODING CG34449 UTR_3_PRIME CG34449 DOWNSTREAM CG34450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12938684	3R_12938684_SNP [dm3] 3R_17112962_SNP [dm6]	T	A	2.298e^-4	0.669	INTRON cher	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	1486498	2L_1486498_SNP [dm3] 2L_1486498_SNP [dm6]	A	T	2.305e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10070257	3R_10070257_SNP [dm3] 3R_14244535_SNP [dm6]	G	A	2.308e^-4	0.669	NON_SYNONYMOUS_CODING CG43291 DOWNSTREAM CG9616
3R	26182554	3R_26182554_SNP [dm3] 3R_30356832_SNP [dm6]	C	T	2.314e^-4	0.669	INTRON hdc
2L	14001841	2L_14001841_SNP [dm3] 2L_14001841_SNP [dm6]	T	A	2.315e^-4	0.669	UPSTREAM rk INTERGENIC
X	19126337	X_19126337_SNP [dm3] X_19232304_SNP [dm6]	C	T	2.315e^-4	0.669	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	7224434	3L_7224434_SNP [dm3] 3L_7231334_SNP [dm6]	C	A	2.325e^-4	0.67	INTERGENIC
3L	15673500	3L_15673500_SNP [dm3] 3L_15680400_SNP [dm6]	G	C	2.326e^-4	0.67	SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
2R	18203566	2R_18203566_SNP [dm3] 2R_22316061_SNP [dm6]	C	G	2.338e^-4	0.671	INTRON CR44758
X	19256558	X_19256558_SNP [dm3] X_19362525_SNP [dm6]	C	T	2.338e^-4	0.671	INTRON kek5	TF binding site BDTNP1_TFBS_dl
X	15517868	X_15517868_SNP [dm3] X_15623835_SNP [dm6]	T	A	2.349e^-4	0.671	INTRON sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	2.376e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9395768	3L_9395768_SNP [dm3] 3L_9402668_SNP [dm6]	C	G	2.379e^-4	0.671	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10534471	2R_10534471_SNP [dm3] 2R_14646966_SNP [dm6]	A	C	2.382e^-4	0.671	DOWNSTREAM CG10139 INTERGENIC
X	3739856	X_3739856_SNP [dm3] X_3845823_SNP [dm6]	T	A	2.389e^-4	0.671	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22373749	3L_22373749_SNP [dm3] 3L_22380649_SNP [dm6]	G	C	2.404e^-4	0.671	INTRON Ten-m	TF binding site mE1_TFBS_sens
3R	20375725	3R_20375725_INS [dm3] 3R_24550003_INS [dm6]	G	GG	2.422e^-4	0.671	INTRON Esyt2
2R	12454435	2R_12454435_SNP [dm3] 2R_16566930_SNP [dm6]	G	T	2.429e^-4	0.671	UTR_5_PRIME CG4945
2L	1098507	2L_1098507_SNP [dm3] 2L_1098507_SNP [dm6]	G	C	2.431e^-4	0.671	INTRON CG4629
3L	15672847	3L_15672847_SNP [dm3] 3L_15679747_SNP [dm6]	T	A	2.437e^-4	0.671	NON_SYNONYMOUS_CODING CG7304
2L	6017023	2L_6017023_SNP [dm3] 2L_6017023_SNP [dm6]	T	C	2.438e^-4	0.671	INTRON H2.0	TF binding site mE1_TFBS_inv
2L	8965581	2L_8965581_SNP [dm3] 2L_8965581_SNP [dm6]	T	G	2.440e^-4	0.671	NON_SYNONYMOUS_CODING CG32984 DOWNSTREAM CG32985
3L	3640874	3L_3640874_SNP [dm3] 3L_3640874_SNP [dm6]	C	T	2.444e^-4	0.671	INTRON dar1
3L	10921255	3L_10921255_SNP [dm3] 3L_10928155_SNP [dm6]	T	C	2.444e^-4	0.671	INTERGENIC
3L	18559923	3L_18559923_SNP [dm3] 3L_18566823_SNP [dm6]	A	T	2.448e^-4	0.671	INTRON AstC-R1
2L	9452635	2L_9452635_INS [dm3] 2L_9452635_INS [dm6]	T	TAACAGCA	2.454e^-4	0.671	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	13383103	3L_13383103_SNP [dm3] 3L_13390003_SNP [dm6]	T	C	2.458e^-4	0.671	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20447737	3R_20447737_SNP [dm3] 3R_24622015_SNP [dm6]	C	T	2.459e^-4	0.671	INTRON mld
2R	8125560	2R_8125560_DEL [dm3] 2R_12238055_DEL [dm6]	AT	A	2.468e^-4	0.671	INTERGENIC
X	18737168	X_18737168_SNP [dm3] X_18843135_SNP [dm6]	C	G	2.471e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737175	X_18737175_SNP [dm3] X_18843142_SNP [dm6]	C	G	2.471e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18737252	X_18737252_SNP [dm3] X_18843219_SNP [dm6]	T	A	2.471e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	15437203	2L_15437203_SNP [dm3] 2L_15437203_SNP [dm6]	G	T	2.474e^-4	0.671	DOWNSTREAM CR44861 INTERGENIC
2R	18203641	2R_18203641_SNP [dm3] 2R_22316136_SNP [dm6]	A	G	2.478e^-4	0.671	INTRON CR44758
3R	3225185	3R_3225185_SNP [dm3] 3R_7399463_SNP [dm6]	A	G	2.488e^-4	0.671	INTERGENIC
X	10745394	X_10745394_SNP [dm3] X_10851361_SNP [dm6]	G	T	2.490e^-4	0.671	SYNONYMOUS_CODING CG2202	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18641181	2L_18641181_SNP [dm3] 2L_18641181_SNP [dm6]	A	G	2.491e^-4	0.671	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16969941	3L_16969941_SNP [dm3] 3L_16976841_SNP [dm6]	T	A	2.493e^-4	0.671	INTRON Exn
3L	14117009	3L_14117009_INS [dm3] 3L_14123909_INS [dm6]	C	CC	2.497e^-4	0.671	INTRON Sox21b
3R	25812310	3R_25812310_SNP [dm3] 3R_29986588_SNP [dm6]	C	T	2.499e^-4	0.671	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11903899	2L_11903899_SNP [dm3] 2L_11903899_SNP [dm6]	A	C	2.503e^-4	0.671	INTRON Pde1c
2R	20390342	2R_20390342_SNP [dm3] 2R_24502819_SNP [dm6]	G	A	2.506e^-4	0.671	UPSTREAM Prosalpha4T2 INTERGENIC
2R	6954347	2R_6954347_SNP [dm3] 2R_11066842_SNP [dm6]	G	A	2.507e^-4	0.671	INTRON luna
X	9192592	X_9192592_SNP [dm3] X_9298559_SNP [dm6]	A	T	2.514e^-4	0.671	INTRON lz
2L	496693	2L_496693_SNP [dm3] 2L_496693_SNP [dm6]	C	T	2.514e^-4	0.671	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18737255	X_18737255_SNP [dm3] X_18843222_SNP [dm6]	A	T	2.521e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	617325	3L_617325_SNP [dm3] 3L_617325_SNP [dm6]	T	A	2.521e^-4	0.671	UPSTREAM CR42719 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7083312	3L_7083312_SNP [dm3] 3L_7090212_SNP [dm6]	C	A	2.523e^-4	0.671	INTERGENIC
3L	22427390	3L_22427390_SNP [dm3] 3L_22434290_SNP [dm6]	G	A	2.527e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14342184	3R_14342184_SNP [dm3] 3R_18516462_SNP [dm6]	C	T	2.528e^-4	0.671	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	18737245	X_18737245_INS [dm3] X_18843212_INS [dm6]	A	TCTC	2.529e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	7735910	3R_7735910_SNP [dm3] 3R_11910188_SNP [dm6]	G	T	2.529e^-4	0.671	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10684241	2R_10684241_SNP [dm3] 2R_14796736_SNP [dm6]	A	T	2.530e^-4	0.671	INTRON kn
X	18737171	X_18737171_SNP [dm3] X_18843138_SNP [dm6]	C	A	2.532e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	16792099	2R_16792099_SNP [dm3] 2R_20904594_SNP [dm6]	A	T	2.539e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19769760	3L_19769760_DEL [dm3] 3L_19776660_DEL [dm6]	GGAACATTAAG...	G	2.542e^-4	0.671	INTRON CG42637 & 1 other
X	18737250	X_18737250_INS [dm3] X_18843217_INS [dm6]	A	ATCTGTATGCTG...	2.550e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	11649612	3L_11649612_SNP [dm3] 3L_11656512_SNP [dm6]	C	T	2.555e^-4	0.671	UPSTREAM mir-274 INTRON CG32085
3L	4614637	3L_4614637_SNP [dm3] 3L_4614637_SNP [dm6]	T	C	2.555e^-4	0.671	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	13791842	2R_13791842_SNP [dm3] 2R_17904337_SNP [dm6]	A	T	2.556e^-4	0.671	INTRON Elk
X	18737163	X_18737163_SNP [dm3] X_18843130_SNP [dm6]	A	T	2.557e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	10188905	3R_10188905_SNP [dm3] 3R_14363183_SNP [dm6]	T	C	2.558e^-4	0.671	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6270198	2R_6270198_SNP [dm3] 2R_10382693_SNP [dm6]	C	T	2.558e^-4	0.671	INTRON CG42732	TF binding site mE1_TFBS_sbb
X	9413330	X_9413330_SNP [dm3] X_9519297_SNP [dm6]	T	A	2.559e^-4	0.671	INTRON CG32700
3R	13311987	3R_13311987_SNP [dm3] 3R_17486265_SNP [dm6]	C	T	2.568e^-4	0.671	INTRON Dscam3
3L	19968742	3L_19968742_SNP [dm3] 3L_19975642_SNP [dm6]	A	G	2.571e^-4	0.671	INTRON Ac76E
3R	9376374	3R_9376374_SNP [dm3] 3R_13550652_SNP [dm6]	A	G	2.572e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4995330	3R_4995330_SNP [dm3] 3R_9169608_SNP [dm6]	A	G	2.579e^-4	0.671	INTRON pum
3R	26845665	3R_26845665_SNP [dm3] 3R_31019943_SNP [dm6]	T	C	2.579e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_inv
X	12634979	X_12634979_SNP [dm3] X_12740946_SNP [dm6]	C	A	2.580e^-4	0.671	INTRON Smr
2L	12515452	2L_12515452_SNP [dm3] 2L_12515452_SNP [dm6]	A	C	2.580e^-4	0.671	INTRON bun
2R	18249857	2R_18249857_SNP [dm3] 2R_22362352_SNP [dm6]	T	G	2.582e^-4	0.671	INTRON Liprin-gamma
2R	8910204	2R_8910204_SNP [dm3] 2R_13022699_SNP [dm6]	C	T	2.587e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_sens
X	2992336	X_2992336_SNP [dm3] X_3098303_SNP [dm6]	C	T	2.589e^-4	0.671	INTRON kirre	regulatory region REDfly_CRMs
3L	12425136	3L_12425136_SNP [dm3] 3L_12432036_SNP [dm6]	C	T	2.589e^-4	0.671	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	18737234	X_18737234_SNP [dm3] X_18843201_SNP [dm6]	T	C	2.596e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18220941	3L_18220941_SNP [dm3] 3L_18227841_SNP [dm6]	T	A	2.597e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	5173001	2L_5173001_SNP [dm3] 2L_5173001_SNP [dm6]	A	G	2.601e^-4	0.671	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7322811	X_7322811_SNP [dm3] X_7428778_SNP [dm6]	C	G	2.603e^-4	0.671	INTERGENIC
3R	24938589	3R_24938589_SNP [dm3] 3R_29112867_SNP [dm6]	A	C	2.605e^-4	0.671	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8144175	2R_8144175_SNP [dm3] 2R_12256670_SNP [dm6]	G	T	2.605e^-4	0.671	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
2R	12092069	2R_12092069_SNP [dm3] 2R_16204564_SNP [dm6]	C	G	2.606e^-4	0.671	SYNONYMOUS_CODING mrj
3L	9496267	3L_9496267_SNP [dm3] 3L_9503167_SNP [dm6]	G	T	2.612e^-4	0.671	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21264908	3R_21264908_SNP [dm3] 3R_25439186_SNP [dm6]	A	T	2.614e^-4	0.671	INTRON Fur1
3L	9394909	3L_9394909_DEL [dm3] 3L_9401809_DEL [dm6]	TT	T	2.614e^-4	0.671	UPSTREAM eIF-4E INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	11549957	3L_11549957_SNP [dm3] 3L_11556857_SNP [dm6]	G	A	2.615e^-4	0.671	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	10705994	2L_10705994_SNP [dm3] 2L_10705994_SNP [dm6]	C	T	2.619e^-4	0.671	INTRON Lip2
3L	16361976	3L_16361976_SNP [dm3] 3L_16368876_SNP [dm6]	A	T	2.619e^-4	0.671	UPSTREAM CG18814 INTRON CG4842
2L	11937947	2L_11937947_SNP [dm3] 2L_11937947_SNP [dm6]	G	T	2.621e^-4	0.671	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC	TF binding site mE1_TFBS_cad
2R	18175330	2R_18175330_SNP [dm3] 2R_22287825_SNP [dm6]	G	T	2.626e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4926742	2L_4926742_SNP [dm3] 2L_4926742_SNP [dm6]	A	G	2.632e^-4	0.671	INTRON hoe1
3L	22249432	3L_22249432_MNP [dm3] 3L_22256332_MNP [dm6]	AGA	CCT	2.635e^-4	0.671	INTERGENIC
3L	18780066	3L_18780066_SNP [dm3] 3L_18786966_SNP [dm6]	T	C	2.646e^-4	0.671	INTRON ftz-f1
X	18174538	X_18174538_SNP [dm3] X_18280505_SNP [dm6]	A	C	2.656e^-4	0.671	INTRON upd3	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	2167014	3R_2167014_DEL [dm3] 3R_6341292_DEL [dm6]	ATCT	C	2.661e^-4	0.671	UTR_3_PRIME Osi20 UPSTREAM CG17917	TF binding site mE1_TFBS_cad
2R	20381382	2R_20381382_SNP [dm3] 2R_24493859_SNP [dm6]	G	A	2.669e^-4	0.671	UPSTREAM Crtp INTRON CG13590
3R	6401507	3R_6401507_SNP [dm3] 3R_10575785_SNP [dm6]	A	G	2.679e^-4	0.671	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21248493	3R_21248493_SNP [dm3] 3R_25422771_SNP [dm6]	C	A	2.682e^-4	0.671	INTRON Fur1
2R	5334094	2R_5334094_SNP [dm3] 2R_9446589_SNP [dm6]	G	T	2.685e^-4	0.671	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18737165	X_18737165_SNP [dm3] X_18843132_SNP [dm6]	A	T	2.686e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737156	X_18737156_SNP [dm3] X_18843123_SNP [dm6]	A	T	2.694e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	6341487	2L_6341487_SNP [dm3] 2L_6341487_SNP [dm6]	G	A	2.694e^-4	0.671	UPSTREAM Cpr INTRON Cpr
3R	23276199	3R_23276199_SNP [dm3] 3R_27450477_SNP [dm6]	T	A	2.697e^-4	0.671	INTERGENIC
2R	18203117	2R_18203117_SNP [dm3] 2R_22315612_SNP [dm6]	G	T	2.699e^-4	0.671	INTRON CR44758
2L	4255067	2L_4255067_SNP [dm3] 2L_4255067_SNP [dm6]	T	C	2.701e^-4	0.671	DOWNSTREAM CR45294 INTERGENIC
3L	9219958	3L_9219958_SNP [dm3] 3L_9226858_SNP [dm6]	A	G	2.704e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8121485	2R_8121485_SNP [dm3] 2R_12233980_SNP [dm6]	T	C	2.704e^-4	0.671	DOWNSTREAM CR44313 INTERGENIC
3L	14154659	3L_14154659_SNP [dm3] 3L_14161559_SNP [dm6]	C	G	2.705e^-4	0.671	INTERGENIC	regulatory region REDfly_CRMs
3R	21803805	3R_21803805_SNP [dm3] 3R_25978083_SNP [dm6]	C	T	2.707e^-4	0.671	SPLICE_SITE_REGION CG42261 INTRON CG42261	TF binding site mE1_TFBS_chinmo
2R	5593368	2R_5593368_SNP [dm3] 2R_9705863_SNP [dm6]	A	G	2.708e^-4	0.671	UTR_3_PRIME CG30002 UPSTREAM CG1773
3R	12741946	3R_12741946_SNP [dm3] 3R_16916224_SNP [dm6]	G	C	2.713e^-4	0.671	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1074650	2L_1074650_SNP [dm3] 2L_1074650_SNP [dm6]	T	C	2.713e^-4	0.671	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	17304951	2R_17304951_SNP [dm3] 2R_21417446_SNP [dm6]	T	A	2.714e^-4	0.671	UPSTREAM Sdc INTRON Sdc
X	12592607	X_12592607_SNP [dm3] X_12698574_SNP [dm6]	A	G	2.718e^-4	0.671	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3L	6984893	3L_6984893_SNP [dm3] 3L_6991793_SNP [dm6]	G	A	2.725e^-4	0.671	SYNONYMOUS_CODING bin
X	7537029	X_7537029_SNP [dm3] X_7642996_SNP [dm6]	T	C	2.726e^-4	0.671	INTRON ct
3L	10850113	3L_10850113_SNP [dm3] 3L_10857013_SNP [dm6]	A	G	2.726e^-4	0.671	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	8341420	2L_8341420_SNP [dm3] 2L_8341420_SNP [dm6]	G	A	2.729e^-4	0.671	UTR_3_PRIME CG14274
3L	3614923	3L_3614923_SNP [dm3] 3L_3614923_SNP [dm6]	A	T	2.733e^-4	0.671	SYNONYMOUS_CODING CG10359 UPSTREAM CG10357
2R	14363195	2R_14363195_SNP [dm3] 2R_18475690_SNP [dm6]	G	T	2.737e^-4	0.671	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13374266	3L_13374266_SNP [dm3] 3L_13381166_SNP [dm6]	C	G	2.747e^-4	0.671	SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14449738	2L_14449738_SNP [dm3] 2L_14449738_SNP [dm6]	T	C	2.747e^-4	0.671	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	16693307	2R_16693307_SNP [dm3] 2R_20805802_SNP [dm6]	C	A	2.749e^-4	0.671	INTERGENIC
2L	14336797	2L_14336797_SNP [dm3] 2L_14336797_SNP [dm6]	T	A	2.753e^-4	0.671	INTRON CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19127336	X_19127336_SNP [dm3] X_19233303_SNP [dm6]	T	G	2.767e^-4	0.671	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	2.771e^-4	0.671	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13704885	2R_13704885_SNP [dm3] 2R_17817380_SNP [dm6]	A	C	2.776e^-4	0.671	SPLICE_SITE_REGION grh SYNONYMOUS_CODING grh INTRON grh	regulatory region REDfly_CRMs
2R	15662451	2R_15662451_SNP [dm3] 2R_19774946_SNP [dm6]	C	T	2.778e^-4	0.671	INTERGENIC
3L	13596624	3L_13596624_SNP [dm3] 3L_13603524_SNP [dm6]	A	G	2.782e^-4	0.671	INTRON bru-3
2L	5769355	2L_5769355_SNP [dm3] 2L_5769355_SNP [dm6]	G	A	2.789e^-4	0.671	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3L	19665307	3L_19665307_SNP [dm3] 3L_19672207_SNP [dm6]	C	T	2.790e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4768412	X_4768412_SNP [dm3] X_4874379_SNP [dm6]	T	C	2.793e^-4	0.671	INTRON CG42594 EXON CR43495
2R	13789001	2R_13789001_SNP [dm3] 2R_17901496_SNP [dm6]	T	C	2.794e^-4	0.671	INTRON Elk
2R	6274744	2R_6274744_SNP [dm3] 2R_10387239_SNP [dm6]	A	G	2.794e^-4	0.671	INTRON CG42732
2R	20364356	2R_20364356_SNP [dm3] 2R_24476833_SNP [dm6]	T	A	2.795e^-4	0.671	DOWNSTREAM CG16837 INTRON CG13579
2R	15433940	2R_15433940_SNP [dm3] 2R_19546435_SNP [dm6]	C	T	2.807e^-4	0.671	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	2.815e^-4	0.671	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16606369	2L_16606369_SNP [dm3] 2L_16606369_SNP [dm6]	G	A	2.815e^-4	0.671	NON_SYNONYMOUS_CODING CG31815 INTRON CG42389
X	5920643	X_5920643_SNP [dm3] X_6026610_SNP [dm6]	T	C	2.817e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19256287	X_19256287_SNP [dm3] X_19362254_SNP [dm6]	T	G	2.817e^-4	0.671	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9377053	3R_9377053_SNP [dm3] 3R_13551331_SNP [dm6]	C	A	2.817e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	12762111	3R_12762111_SNP [dm3] 3R_16936389_SNP [dm6]	C	T	2.820e^-4	0.671	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15329432	2R_15329432_SNP [dm3] 2R_19441927_SNP [dm6]	G	A	2.820e^-4	0.671	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	14494005	2L_14494005_SNP [dm3] 2L_14494005_SNP [dm6]	A	C	2.821e^-4	0.671	UTR_3_PRIME noc DOWNSTREAM noc
X	4561091	X_4561091_SNP [dm3] X_4667058_SNP [dm6]	C	A	2.826e^-4	0.671	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
X	18737019	X_18737019_SNP [dm3] X_18842986_SNP [dm6]	G	C	2.834e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	3225183	3R_3225183_SNP [dm3] 3R_7399461_SNP [dm6]	C	G	2.836e^-4	0.671	INTERGENIC
2R	15329356	2R_15329356_SNP [dm3] 2R_19441851_SNP [dm6]	C	A	2.842e^-4	0.671	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	14263456	2R_14263456_SNP [dm3] 2R_18375951_SNP [dm6]	C	T	2.844e^-4	0.671	INTERGENIC
2R	15667572	2R_15667572_DEL [dm3] 2R_19780067_DEL [dm6]	CAT	C	2.845e^-4	0.671	INTERGENIC
3R	21141701	3R_21141701_SNP [dm3] 3R_25315979_SNP [dm6]	C	A	2.850e^-4	0.671	SYNONYMOUS_CODING CG10559 DOWNSTREAM CG10553
3L	17816822	3L_17816822_SNP [dm3] 3L_17823722_SNP [dm6]	C	G	2.859e^-4	0.671	UPSTREAM Ir75c INTRON Grd
3L	1202142	3L_1202142_SNP [dm3] 3L_1202142_SNP [dm6]	G	A	2.861e^-4	0.671	SYNONYMOUS_CODING CG32335 INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14221775	2R_14221775_SNP [dm3] 2R_18334270_SNP [dm6]	G	A	2.868e^-4	0.671	INTRON sbb
2R	4691186	2R_4691186_SNP [dm3] 2R_8803681_SNP [dm6]	C	T	2.870e^-4	0.671	INTRON sns
2R	7680076	2R_7680076_SNP [dm3] 2R_11792571_SNP [dm6]	C	T	2.870e^-4	0.671	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9419521	3L_9419521_SNP [dm3] 3L_9426421_SNP [dm6]	C	T	2.871e^-4	0.671	UTR_5_PRIME CG3967 UPSTREAM Shc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13235885	2R_13235885_SNP [dm3] 2R_17348380_SNP [dm6]	G	A	2.872e^-4	0.671	INTRON mbl
2L	11903894	2L_11903894_SNP [dm3] 2L_11903894_SNP [dm6]	T	C	2.877e^-4	0.671	INTRON Pde1c
3R	16555318	3R_16555318_SNP [dm3] 3R_20729596_SNP [dm6]	T	G	2.882e^-4	0.671	INTERGENIC
2R	20146822	2R_20146822_SNP [dm3] 2R_24259299_SNP [dm6]	C	T	2.884e^-4	0.671	INTRON CG3376
2L	11452026	2L_11452026_SNP [dm3] 2L_11452026_SNP [dm6]	T	A	2.900e^-4	0.671	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14486426	3L_14486426_SNP [dm3] 3L_14493326_SNP [dm6]	C	G	2.901e^-4	0.671	INTRON bbg
2R	4328767	2R_4328767_SNP [dm3] 2R_8441262_SNP [dm6]	T	C	2.905e^-4	0.671	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
X	11362724	X_11362724_SNP [dm3] X_11468691_SNP [dm6]	C	A	2.918e^-4	0.671	INTRON CG43155
2R	20432070	2R_20432070_SNP [dm3] 2R_24544547_SNP [dm6]	C	T	2.925e^-4	0.671	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10583997	3R_10583997_SNP [dm3] 3R_14758275_SNP [dm6]	A	G	2.928e^-4	0.671	INTRON jvl
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	2.928e^-4	0.671	INTRON fas
2L	15751255	2L_15751255_SNP [dm3] 2L_15751255_SNP [dm6]	T	G	2.929e^-4	0.671	UPSTREAM l_2_35Di DOWNSTREAM snRNA:U5:35D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9139485	2R_9139485_SNP [dm3] 2R_13251980_SNP [dm6]	C	T	2.953e^-4	0.671	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
2R	14604975	2R_14604975_SNP [dm3] 2R_18717470_SNP [dm6]	G	A	2.954e^-4	0.671	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25016530	3R_25016530_SNP [dm3] 3R_29190808_SNP [dm6]	G	A	2.958e^-4	0.671	INTRON CG14509
2R	5644050	2R_5644050_SNP [dm3] 2R_9756545_SNP [dm6]	G	A	2.961e^-4	0.671	UTR_3_PRIME CG1690 DOWNSTREAM CG1690 INTRON trpl
X	9389916	X_9389916_SNP [dm3] X_9495883_SNP [dm6]	A	G	2.963e^-4	0.671	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	13292903	3R_13292903_SNP [dm3] 3R_17467181_SNP [dm6]	G	C	2.964e^-4	0.671	INTERGENIC
2L	5180036	2L_5180036_SNP [dm3] 2L_5180036_SNP [dm6]	G	A	2.967e^-4	0.671	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	18181123	2R_18181123_SNP [dm3] 2R_22293618_SNP [dm6]	T	G	2.970e^-4	0.671	UTR_5_PRIME CG5819 INTRON CG5819
3R	16409286	3R_16409286_SNP [dm3] 3R_20583564_SNP [dm6]	G	C	2.972e^-4	0.671	NON_SYNONYMOUS_CODING CG16953
3L	13382915	3L_13382915_SNP [dm3] 3L_13389815_SNP [dm6]	C	T	2.972e^-4	0.671	NON_SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14605040	2R_14605040_SNP [dm3] 2R_18717535_SNP [dm6]	G	A	2.974e^-4	0.671	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12314599	2R_12314599_SNP [dm3] 2R_16427094_SNP [dm6]	T	A	2.974e^-4	0.671	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7768006	2L_7768006_SNP [dm3] 2L_7768006_SNP [dm6]	G	T	2.977e^-4	0.671	INTRON CG7191
3L	5872635	3L_5872635_INS [dm3] 3L_5879535_INS [dm6]	T	TAGACGTAATTTGCTAAACA...	2.982e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18428363	2R_18428363_SNP [dm3] 2R_22540858_SNP [dm6]	A	C	2.984e^-4	0.671	SYNONYMOUS_CODING px
2R	7898218	2R_7898218_DEL [dm3] 2R_12010713_DEL [dm6]	CTGTTTTTC	C	2.986e^-4	0.671	INTRON otk	regulatory region REDfly_CRMs
3L	11649747	3L_11649747_SNP [dm3] 3L_11656647_SNP [dm6]	C	T	2.986e^-4	0.671	UPSTREAM mir-274 INTRON CG32085
3R	13292028	3R_13292028_SNP [dm3] 3R_17466306_SNP [dm6]	T	C	2.990e^-4	0.671	INTERGENIC
3R	9385015	3R_9385015_SNP [dm3] 3R_13559293_SNP [dm6]	G	T	2.992e^-4	0.671	INTERGENIC
3L	9104387	3L_9104387_SNP [dm3] 3L_9111287_SNP [dm6]	G	A	2.992e^-4	0.671	INTRON bol
X	18737202	X_18737202_INS [dm3] X_18843169_INS [dm6]	TA	CGTGTGGCTTGT...	2.993e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1494122	2L_1494122_SNP [dm3] 2L_1494122_SNP [dm6]	G	A	2.995e^-4	0.671	UTR_5_PRIME CG33128 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad
X	18737227	X_18737227_SNP [dm3] X_18843194_SNP [dm6]	A	T	2.995e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737229	X_18737229_SNP [dm3] X_18843196_SNP [dm6]	A	T	2.995e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18258774	X_18258774_SNP [dm3] X_18364741_SNP [dm6]	C	T	3.004e^-4	0.671	INTERGENIC
X	15189377	X_15189377_SNP [dm3] X_15295344_SNP [dm6]	G	T	3.011e^-4	0.671	SYNONYMOUS_CODING CG5877	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6276787	2R_6276787_SNP [dm3] 2R_10389282_SNP [dm6]	C	G	3.016e^-4	0.671	INTRON CG42732
3L	6395564	3L_6395564_SNP [dm3] 3L_6402464_SNP [dm6]	G	A	3.018e^-4	0.671	INTRON CG42747
X	21887004	X_21887004_SNP [dm3] X_22485168_SNP [dm6]	G	T	3.021e^-4	0.671	INTRON Cp110
3R	9388335	3R_9388335_SNP [dm3] 3R_13562613_SNP [dm6]	A	C	3.024e^-4	0.671	INTERGENIC
2R	9170635	2R_9170635_SNP [dm3] 2R_13283130_SNP [dm6]	C	T	3.036e^-4	0.671	INTRON Dh31-R
2L	11405538	2L_11405538_SNP [dm3] 2L_11405538_SNP [dm6]	G	A	3.037e^-4	0.671	INTERGENIC	regulatory region REDfly_CRMs
X	19126592	X_19126592_SNP [dm3] X_19232559_SNP [dm6]	T	C	3.039e^-4	0.671	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6637274	3L_6637274_SNP [dm3] 3L_6644174_SNP [dm6]	C	T	3.040e^-4	0.671	INTERGENIC
X	18737197	X_18737197_SNP [dm3] X_18843164_SNP [dm6]	G	A	3.047e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16792063	2R_16792063_SNP [dm3] 2R_20904558_SNP [dm6]	G	T	3.047e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8110146	2R_8110146_SNP [dm3] 2R_12222641_SNP [dm6]	G	T	3.050e^-4	0.671	INTERGENIC
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	3.058e^-4	0.671	INTERGENIC
X	9083985	X_9083985_SNP [dm3] X_9189952_SNP [dm6]	A	G	3.060e^-4	0.671	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	18737238	X_18737238_SNP [dm3] X_18843205_SNP [dm6]	C	A	3.060e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	3010442	2L_3010442_SNP [dm3] 2L_3010442_SNP [dm6]	C	T	3.060e^-4	0.671	INTRON CG17265
X	18737015	X_18737015_SNP [dm3] X_18842982_SNP [dm6]	A	T	3.062e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	17685817	3R_17685817_SNP [dm3] 3R_21860095_SNP [dm6]	G	A	3.064e^-4	0.671	DOWNSTREAM CR45644 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	18189748	2R_18189748_DEL [dm3] 2R_22302243_DEL [dm6]	CCCAGATTTATATATAA...	G	3.066e^-4	0.671	UPSTREAM wdp INTRON wdp	TF binding site BDTNP1_TFBS_da
X	13613646	X_13613646_SNP [dm3] X_13719613_SNP [dm6]	A	G	3.067e^-4	0.671	SYNONYMOUS_CODING CG9941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18440625	2R_18440625_SNP [dm3] 2R_22553120_SNP [dm6]	G	A	3.069e^-4	0.671	INTRON px
2L	1452779	2L_1452779_DEL [dm3] 2L_1452779_DEL [dm6]	CC	C	3.082e^-4	0.671	INTERGENIC
X	18171878	X_18171878_SNP [dm3] X_18277845_SNP [dm6]	A	T	3.085e^-4	0.671	INTRON upd3
3R	18212176	3R_18212176_SNP [dm3] 3R_22386454_SNP [dm6]	G	A	3.093e^-4	0.671	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
X	6745217	X_6745217_DEL [dm3] X_6851184_DEL [dm6]	GCTATAACTGACAAATAT...	A	3.099e^-4	0.671	UTR_3_PRIME CG4558 DOWNSTREAM CG14434 INTRON CG4558
X	5922253	X_5922253_SNP [dm3] X_6028220_SNP [dm6]	T	C	3.102e^-4	0.671	INTERGENIC
2R	20419031	2R_20419031_SNP [dm3] 2R_24531508_SNP [dm6]	T	A	3.107e^-4	0.671	UPSTREAM CG13585 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20419046	2R_20419046_SNP [dm3] 2R_24531523_SNP [dm6]	C	T	3.107e^-4	0.671	UPSTREAM CG13585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20419056	2R_20419056_SNP [dm3] 2R_24531533_SNP [dm6]	G	C	3.107e^-4	0.671	UPSTREAM CG13585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10544831	2R_10544831_SNP [dm3] 2R_14657326_SNP [dm6]	G	A	3.114e^-4	0.671	SYNONYMOUS_CODING Adgf-E
3L	21035130	3L_21035130_SNP [dm3] 3L_21042030_SNP [dm6]	A	G	3.115e^-4	0.671	INTRON siz
2L	4405494	2L_4405494_SNP [dm3] 2L_4405494_SNP [dm6]	A	T	3.116e^-4	0.671	UTR_3_PRIME CG15431
2L	15422302	2L_15422302_SNP [dm3] 2L_15422302_SNP [dm6]	T	A	3.123e^-4	0.671	DOWNSTREAM wor INTERGENIC
2L	12468289	2L_12468289_SNP [dm3] 2L_12468289_SNP [dm6]	A	C	3.125e^-4	0.671	INTRON bun
2L	9827465	2L_9827465_SNP [dm3] 2L_9827465_SNP [dm6]	A	C	3.128e^-4	0.671	INTRON nAChRalpha6
2R	20394264	2R_20394264_SNP [dm3] 2R_24506741_SNP [dm6]	A	G	3.132e^-4	0.671	UPSTREAM CG13581 INTERGENIC
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	3.133e^-4	0.671	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3838102	3R_3838102_SNP [dm3] 3R_8012380_SNP [dm6]	C	G	3.137e^-4	0.671	NON_SYNONYMOUS_CODING CG10435	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20379249	2R_20379249_DEL [dm3] 2R_24491726_DEL [dm6]	ATTTGCGA	A	3.139e^-4	0.671	DOWNSTREAM CG13589 INTERGENIC
2L	3015366	2L_3015366_SNP [dm3] 2L_3015366_SNP [dm6]	T	C	3.140e^-4	0.671	SYNONYMOUS_CODING CG17265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18737241	X_18737241_SNP [dm3] X_18843208_SNP [dm6]	A	C	3.140e^-4	0.671	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	9396676	3L_9396676_SNP [dm3] 3L_9403576_SNP [dm6]	G	A	3.147e^-4	0.672	INTERGENIC
3R	5002903	3R_5002903_SNP [dm3] 3R_9177181_SNP [dm6]	T	G	3.167e^-4	0.672	UPSTREAM CG11997 INTRON pum	TF binding site BDTNP1_TFBS_twi
2L	15429802	2L_15429802_SNP [dm3] 2L_15429802_SNP [dm6]	G	C	3.169e^-4	0.672	INTERGENIC
2R	20371240	2R_20371240_SNP [dm3] 2R_24483717_SNP [dm6]	A	T	3.174e^-4	0.672	INTRON CG13579
2L	12908642	2L_12908642_SNP [dm3] 2L_12908642_SNP [dm6]	A	C	3.177e^-4	0.672	INTERGENIC
2L	11461832	2L_11461832_SNP [dm3] 2L_11461832_SNP [dm6]	A	T	3.179e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5944037	3R_5944037_SNP [dm3] 3R_10118315_SNP [dm6]	C	T	3.180e^-4	0.672	SYNONYMOUS_CODING CG3940
X	9084066	X_9084066_SNP [dm3] X_9190033_SNP [dm6]	A	G	3.182e^-4	0.672	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
3R	13943755	3R_13943755_SNP [dm3] 3R_18118033_SNP [dm6]	T	C	3.190e^-4	0.672	INTRON sr	TF binding site BDTNP1_TFBS_twi
2L	5180655	2L_5180655_SNP [dm3] 2L_5180655_SNP [dm6]	C	T	3.190e^-4	0.672	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3L	13297488	3L_13297488_SNP [dm3] 3L_13304388_SNP [dm6]	A	G	3.197e^-4	0.672	DOWNSTREAM CR44555 INTERGENIC
3R	13325428	3R_13325428_SNP [dm3] 3R_17499706_SNP [dm6]	A	T	3.208e^-4	0.672	INTRON Dscam3
2R	18178743	2R_18178743_DEL [dm3] 2R_22291238_DEL [dm6]	AA	A	3.209e^-4	0.672	UPSTREAM CR43422 INTERGENIC
2R	10684254	2R_10684254_SNP [dm3] 2R_14796749_SNP [dm6]	T	C	3.212e^-4	0.672	INTRON kn
2R	7173919	2R_7173919_SNP [dm3] 2R_11286414_SNP [dm6]	C	T	3.218e^-4	0.672	INTRON fbl6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1494061	2L_1494061_DEL [dm3] 2L_1494061_DEL [dm6]	TA	T	3.218e^-4	0.672	UPSTREAM CG33128 DOWNSTREAM CG31928 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14439882	2R_14439882_SNP [dm3] 2R_18552377_SNP [dm6]	T	C	3.220e^-4	0.672	INTERGENIC
2L	10048932	2L_10048932_SNP [dm3] 2L_10048932_SNP [dm6]	C	T	3.221e^-4	0.672	UPSTREAM CG33301 INTERGENIC
2R	4417130	2R_4417130_INS [dm3] 2R_8529625_INS [dm6]	C	CAAGTGAAAATGAA...	3.221e^-4	0.672	INTRON mtt	transposable element FlyBase
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	3.222e^-4	0.672	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13673612	2L_13673612_SNP [dm3] 2L_13673612_SNP [dm6]	T	C	3.224e^-4	0.672	DOWNSTREAM CG18507 INTERGENIC
2L	15744307	2L_15744307_SNP [dm3] 2L_15744307_SNP [dm6]	G	T	3.225e^-4	0.672	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	14605110	2R_14605110_SNP [dm3] 2R_18717605_SNP [dm6]	T	C	3.226e^-4	0.672	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	18647197	X_18647197_SNP [dm3] X_18753164_SNP [dm6]	G	T	3.230e^-4	0.672	INTERGENIC
3L	11553269	3L_11553269_SNP [dm3] 3L_11560169_SNP [dm6]	G	A	3.233e^-4	0.672	INTRON Mob2
X	17288241	X_17288241_SNP [dm3] X_17394208_SNP [dm6]	C	A	3.240e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14605604	2R_14605604_SNP [dm3] 2R_18718099_SNP [dm6]	T	G	3.249e^-4	0.673	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	617329	3L_617329_SNP [dm3] 3L_617329_SNP [dm6]	A	T	3.255e^-4	0.673	UPSTREAM CR42719 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9292987	3L_9292987_SNP [dm3] 3L_9299887_SNP [dm6]	C	T	3.259e^-4	0.673	INTERGENIC
2L	2612354	2L_2612354_SNP [dm3] 2L_2612354_SNP [dm6]	T	C	3.264e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23276214	3R_23276214_SNP [dm3] 3R_27450492_SNP [dm6]	T	G	3.265e^-4	0.673	INTERGENIC
2L	14694475	2L_14694475_SNP [dm3] 2L_14694475_SNP [dm6]	T	C	3.266e^-4	0.673	INTERGENIC
3R	4142571	3R_4142571_SNP [dm3] 3R_8316849_SNP [dm6]	T	C	3.270e^-4	0.673	UPSTREAM CR45215 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20395599	2R_20395599_SNP [dm3] 2R_24508076_SNP [dm6]	T	A	3.280e^-4	0.673	DOWNSTREAM CG13581 INTERGENIC
2R	20403263	2R_20403263_SNP [dm3] 2R_24515740_SNP [dm6]	T	C	3.282e^-4	0.673	NON_SYNONYMOUS_CODING Ir60b UPSTREAM Letm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
X	17660435	X_17660435_SNP [dm3] X_17766402_SNP [dm6]	G	T	3.287e^-4	0.673	INTERGENIC
3R	5001468	3R_5001468_SNP [dm3] 3R_9175746_SNP [dm6]	C	A	3.289e^-4	0.673	INTRON pum
2R	5334093	2R_5334093_SNP [dm3] 2R_9446588_SNP [dm6]	T	C	3.292e^-4	0.673	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16784856	2R_16784856_SNP [dm3] 2R_20897351_SNP [dm6]	G	A	3.293e^-4	0.673	UTR_5_PRIME otp INTRON otp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9154452	2L_9154452_SNP [dm3] 2L_9154452_SNP [dm6]	G	T	3.295e^-4	0.673	INTRON CG32982
X	18153987	X_18153987_DEL [dm3] X_18259954_DEL [dm6]	TCAT	T	3.316e^-4	0.675	UPSTREAM CG15059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18174384	X_18174384_SNP [dm3] X_18280351_SNP [dm6]	C	T	3.319e^-4	0.675	INTRON upd3
3L	2638614	3L_2638614_SNP [dm3] 3L_2638614_SNP [dm6]	G	A	3.322e^-4	0.675	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12414263	3L_12414263_SNP [dm3] 3L_12421163_SNP [dm6]	T	C	3.328e^-4	0.675	INTERGENIC
2R	17968527	2R_17968527_SNP [dm3] 2R_22081022_SNP [dm6]	A	T	3.337e^-4	0.675	INTRON Synj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11490326	2L_11490326_SNP [dm3] 2L_11490326_SNP [dm6]	A	G	3.337e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9841375	2L_9841375_SNP [dm3] 2L_9841375_SNP [dm6]	C	T	3.340e^-4	0.675	INTRON nAChRalpha6
2R	14628636	2R_14628636_SNP [dm3] 2R_18741131_SNP [dm6]	T	A	3.341e^-4	0.675	INTRON Hs3st-A & 1 other
2R	18210220	2R_18210220_SNP [dm3] 2R_22322715_SNP [dm6]	C	A	3.343e^-4	0.675	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17418270	3L_17418270_SNP [dm3] 3L_17425170_SNP [dm6]	T	C	3.348e^-4	0.675	UTR_5_PRIME Sec3 UPSTREAM CG7630	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6093731	2R_6093731_SNP [dm3] 2R_10206226_SNP [dm6]	A	C	3.355e^-4	0.675	UTR_3_PRIME Hr46 & 1 other
X	15865068	X_15865068_SNP [dm3] X_15971035_SNP [dm6]	T	A	3.360e^-4	0.675	INTRON mmd	TF binding site mE1_TFBS_HSA
3R	5014336	3R_5014336_SNP [dm3] 3R_9188614_SNP [dm6]	C	A	3.362e^-4	0.675	INTRON pum
3R	10057283	3R_10057283_SNP [dm3] 3R_14231561_SNP [dm6]	A	G	3.362e^-4	0.675	INTERGENIC
3R	14110569	3R_14110569_SNP [dm3] 3R_18284847_SNP [dm6]	C	T	3.363e^-4	0.675	SYNONYMOUS_CODING CG8064	TF binding site mE1_TFBS_cad
3L	1079093	3L_1079093_SNP [dm3] 3L_1079093_SNP [dm6]	A	G	3.363e^-4	0.675	INTRON bab1	TF binding site mE1_TFBS_HSA
2L	5180783	2L_5180783_SNP [dm3] 2L_5180783_SNP [dm6]	A	G	3.370e^-4	0.676	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9292436	3L_9292436_SNP [dm3] 3L_9299336_SNP [dm6]	C	A	3.380e^-4	0.677	INTERGENIC
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	3.390e^-4	0.677	INTRON CG15270
X	19128963	X_19128963_SNP [dm3] X_19234930_SNP [dm6]	A	G	3.393e^-4	0.677	INTRON CG7884	TF binding site mE1_TFBS_chinmo
2L	11452018	2L_11452018_SNP [dm3] 2L_11452018_SNP [dm6]	G	A	3.395e^-4	0.677	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26405760	3R_26405760_SNP [dm3] 3R_30580038_SNP [dm6]	T	A	3.397e^-4	0.677	INTRON CG9702	TF binding site mE1_TFBS_HSA
3L	2838655	3L_2838655_SNP [dm3] 3L_2838655_SNP [dm6]	T	C	3.401e^-4	0.677	INTRON CG43444
X	17745788	X_17745788_SNP [dm3] X_17851755_SNP [dm6]	G	T	3.405e^-4	0.677	UTR_3_PRIME CG6506 DOWNSTREAM CG32554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	3.405e^-4	0.677	INTRON salm
X	13069277	X_13069277_SNP [dm3] X_13175244_SNP [dm6]	A	T	3.414e^-4	0.678	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
X	18737260	X_18737260_SNP [dm3] X_18843227_SNP [dm6]	A	C	3.427e^-4	0.679	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	18184082	2R_18184082_SNP [dm3] 2R_22296577_SNP [dm6]	G	A	3.429e^-4	0.679	NON_SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13225508	X_13225508_SNP [dm3] X_13331475_SNP [dm6]	T	C	3.430e^-4	0.679	SYNONYMOUS_CODING Jafrac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19129010	X_19129010_SNP [dm3] X_19234977_SNP [dm6]	T	A	3.436e^-4	0.679	INTRON CG7884	TF binding site mE1_TFBS_chinmo
2R	5593825	2R_5593825_SNP [dm3] 2R_9706320_SNP [dm6]	T	C	3.436e^-4	0.679	NON_SYNONYMOUS_CODING CG1773 DOWNSTREAM CG30002
X	18178307	X_18178307_INS [dm3] X_18284274_INS [dm6]	T	TA	3.437e^-4	0.679	UTR_3_PRIME upd3
2L	1953070	2L_1953070_SNP [dm3] 2L_1953070_SNP [dm6]	T	A	3.451e^-4	0.68	INTRON erm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11298654	3R_11298654_SNP [dm3] 3R_15472932_SNP [dm6]	T	C	3.454e^-4	0.68	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
3L	9295737	3L_9295737_SNP [dm3] 3L_9302637_SNP [dm6]	C	T	3.465e^-4	0.68	INTERGENIC
X	19129025	X_19129025_SNP [dm3] X_19234992_SNP [dm6]	G	C	3.475e^-4	0.68	INTRON CG7884	TF binding site mE1_TFBS_chinmo
X	19129285	X_19129285_SNP [dm3] X_19235252_SNP [dm6]	T	C	3.475e^-4	0.68	UTR_3_PRIME CG7884 DOWNSTREAM CG14196 INTRON CG7884	TF binding site mE1_TFBS_chinmo
X	18737262	X_18737262_SNP [dm3] X_18843229_SNP [dm6]	A	G	3.476e^-4	0.68	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	12429751	3L_12429751_SNP [dm3] 3L_12436651_SNP [dm6]	A	G	3.476e^-4	0.68	INTERGENIC
2R	19057212	2R_19057212_SNP [dm3] 2R_23169689_SNP [dm6]	C	A	3.477e^-4	0.68	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18182463	2R_18182463_SNP [dm3] 2R_22294958_SNP [dm6]	T	C	3.479e^-4	0.68	SYNONYMOUS_CODING CG5819
2R	18182478	2R_18182478_SNP [dm3] 2R_22294973_SNP [dm6]	G	A	3.479e^-4	0.68	SYNONYMOUS_CODING CG5819
X	10567432	X_10567432_SNP [dm3] X_10673399_SNP [dm6]	C	A	3.488e^-4	0.681	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
2R	15329397	2R_15329397_SNP [dm3] 2R_19441892_SNP [dm6]	G	A	3.491e^-4	0.681	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	10269065	2R_10269065_SNP [dm3] 2R_14381560_SNP [dm6]	C	T	3.495e^-4	0.681	INTRON Dh44-R1
3L	19962569	3L_19962569_SNP [dm3] 3L_19969469_SNP [dm6]	G	A	3.502e^-4	0.681	INTRON Ac76E
3L	19969489	3L_19969489_DEL [dm3] 3L_19976389_DEL [dm6]	TTT	T	3.510e^-4	0.681	INTRON Ac76E
2R	18245408	2R_18245408_SNP [dm3] 2R_22357903_SNP [dm6]	A	G	3.512e^-4	0.681	INTRON Liprin-gamma	transposable element FlyBase
2R	18189743	2R_18189743_SNP [dm3] 2R_22302238_SNP [dm6]	T	A	3.515e^-4	0.681	UPSTREAM wdp INTRON wdp	TF binding site BDTNP1_TFBS_da
2L	4218967	2L_4218967_SNP [dm3] 2L_4218967_SNP [dm6]	C	T	3.517e^-4	0.681	INTRON ft	TF binding site mE1_TFBS_HSA
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	3.519e^-4	0.681	INTRON CG7367 & 1 other
3R	26405794	3R_26405794_SNP [dm3] 3R_30580072_SNP [dm6]	C	G	3.533e^-4	0.681	INTRON CG9702	TF binding site mE1_TFBS_HSA
2R	12609679	2R_12609679_SNP [dm3] 2R_16722174_SNP [dm6]	T	C	3.534e^-4	0.681	INTRON CG30463
2R	14619166	2R_14619166_SNP [dm3] 2R_18731661_SNP [dm6]	T	A	3.535e^-4	0.681	INTRON Hs3st-A
3R	20608213	3R_20608213_SNP [dm3] 3R_24782491_SNP [dm6]	T	G	3.537e^-4	0.681	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2L	12802190	2L_12802190_SNP [dm3] 2L_12802190_SNP [dm6]	G	A	3.547e^-4	0.681	INTERGENIC
2R	7030454	2R_7030454_SNP [dm3] 2R_11142949_SNP [dm6]	C	T	3.548e^-4	0.681	UTR_5_PRIME CG13229
3L	12424962	3L_12424962_SNP [dm3] 3L_12431862_SNP [dm6]	C	T	3.558e^-4	0.681	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14342198	3R_14342198_SNP [dm3] 3R_18516476_SNP [dm6]	A	T	3.561e^-4	0.681	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	7244787	2L_7244787_SNP [dm3] 2L_7244787_SNP [dm6]	A	G	3.565e^-4	0.681	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	9418771	3L_9418771_SNP [dm3] 3L_9425671_SNP [dm6]	A	G	3.569e^-4	0.681	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18742874	2L_18742874_SNP [dm3] 2L_18742874_SNP [dm6]	G	C	3.570e^-4	0.681	INTERGENIC
2R	8112843	2R_8112843_SNP [dm3] 2R_12225338_SNP [dm6]	T	C	3.572e^-4	0.681	INTRON CG8854
2R	16477714	2R_16477714_SNP [dm3] 2R_20590209_SNP [dm6]	T	C	3.578e^-4	0.681	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10253510	2R_10253510_SNP [dm3] 2R_14366005_SNP [dm6]	T	G	3.578e^-4	0.681	UPSTREAM CG34442 DOWNSTREAM Tfb1 INTRON CG34184
X	19129282	X_19129282_SNP [dm3] X_19235249_SNP [dm6]	C	A	3.579e^-4	0.681	UTR_3_PRIME CG7884 DOWNSTREAM CG14196 INTRON CG7884	TF binding site mE1_TFBS_chinmo
2R	20140857	2R_20140857_SNP [dm3] 2R_24253334_SNP [dm6]	T	G	3.581e^-4	0.681	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1111235	2L_1111235_SNP [dm3] 2L_1111235_SNP [dm6]	A	T	3.587e^-4	0.681	INTRON CG14339
3L	9293615	3L_9293615_SNP [dm3] 3L_9300515_SNP [dm6]	A	G	3.592e^-4	0.681	INTERGENIC
2L	3011656	2L_3011656_SNP [dm3] 2L_3011656_SNP [dm6]	A	T	3.593e^-4	0.681	INTRON CG17265
2L	18754607	2L_18754607_SNP [dm3] 2L_18754607_SNP [dm6]	C	T	3.596e^-4	0.681	INTERGENIC
2L	10900513	2L_10900513_SNP [dm3] 2L_10900513_SNP [dm6]	C	A	3.598e^-4	0.681	UTR_3_PRIME CG14070 DOWNSTREAM CG14070
X	19128989	X_19128989_SNP [dm3] X_19234956_SNP [dm6]	G	T	3.601e^-4	0.681	INTRON CG7884	TF binding site mE1_TFBS_chinmo
X	4768487	X_4768487_INS [dm3] X_4874454_INS [dm6]	A	AAC	3.606e^-4	0.681	UPSTREAM CR43495 INTRON CG42594
3R	18092004	3R_18092004_SNP [dm3] 3R_22266282_SNP [dm6]	A	G	3.612e^-4	0.681	INTRON SKIP
2R	6368055	2R_6368055_SNP [dm3] 2R_10480550_SNP [dm6]	T	A	3.614e^-4	0.681	SPLICE_SITE_REGION CG17765 UPSTREAM trsn INTRON CG17765	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	18737236	X_18737236_SNP [dm3] X_18843203_SNP [dm6]	G	A	3.615e^-4	0.681	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26405783	3R_26405783_SNP [dm3] 3R_30580061_SNP [dm6]	T	A	3.622e^-4	0.681	INTRON CG9702	TF binding site mE1_TFBS_HSA
2R	20140854	2R_20140854_SNP [dm3] 2R_24253331_SNP [dm6]	C	T	3.623e^-4	0.681	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16390572	2R_16390572_SNP [dm3] 2R_20503067_SNP [dm6]	A	T	3.624e^-4	0.681	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
X	3231456	X_3231456_SNP [dm3] X_3337423_SNP [dm6]	T	C	3.635e^-4	0.682	SYNONYMOUS_CODING dnc INTRON CR44886
2R	18214731	2R_18214731_SNP [dm3] 2R_22327226_SNP [dm6]	C	T	3.644e^-4	0.682	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.591e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01968

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	15.5203	0.0004

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2485 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	3.630e^-9	0.007	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	2.224e^-8	0.01	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	2.773e^-8	0.01	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	3.213e^-8	0.01	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	3.246e^-8	0.01	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	3.874e^-8	0.01	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	3.898e^-8	0.01	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	5.023e^-8	0.012	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	9.500e^-8	0.02	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	1.218e^-7	0.023	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	3.154e^-7	0.043	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.322e^-7	0.043	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	3.346e^-7	0.043	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	3.446e^-7	0.043	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	3.538e^-7	0.043	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	3.641e^-7	0.043	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	4.641e^-7	0.049	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	4.841e^-7	0.049	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16924626	3L_16924626_SNP [dm3] 3L_16931526_SNP [dm6]	A	T	5.212e^-7	0.049	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	5.505e^-7	0.049	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	5.505e^-7	0.049	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	5.987e^-7	0.051	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	6.841e^-7	0.056	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	7.368e^-7	0.058	DOWNSTREAM mats INTRON pinta
2L	8514798	2L_8514798_SNP [dm3] 2L_8514798_SNP [dm6]	C	T	9.662e^-7	0.07	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12806058	2R_12806058_SNP [dm3] 2R_16918553_SNP [dm6]	C	A	9.963e^-7	0.07	INTERGENIC
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	1.003e^-6	0.07	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8515600	2L_8515600_SNP [dm3] 2L_8515600_SNP [dm6]	T	C	1.123e^-6	0.075	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	1.317e^-6	0.085	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6913150	3L_6913150_SNP [dm3] 3L_6920050_SNP [dm6]	C	A	1.497e^-6	0.094	INTERGENIC
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	1.550e^-6	0.094	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	1.639e^-6	0.095	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11637450	2R_11637450_SNP [dm3] 2R_15749945_SNP [dm6]	C	A	1.675e^-6	0.095	INTRON CG30089
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	1.983e^-6	0.109	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	2.155e^-6	0.114	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	2.181e^-6	0.114	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20193568	2R_20193568_SNP [dm3] 2R_24306045_SNP [dm6]	G	A	2.298e^-6	0.117	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11912956	3L_11912956_SNP [dm3] 3L_11919856_SNP [dm6]	G	T	3.202e^-6	0.155	INTRON CG44837
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	3.214e^-6	0.155	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8515035	2L_8515035_SNP [dm3] 2L_8515035_SNP [dm6]	G	T	3.337e^-6	0.156	UPSTREAM PIG-U & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14662621	2R_14662621_SNP [dm3] 2R_18775116_SNP [dm6]	G	A	4.284e^-6	0.195	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	4.368e^-6	0.195	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6913131	3L_6913131_SNP [dm3] 3L_6920031_SNP [dm6]	T	C	4.957e^-6	0.216	INTERGENIC
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	6.114e^-6	0.261	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	6.417e^-6	0.265	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14662693	2R_14662693_SNP [dm3] 2R_18775188_SNP [dm6]	C	G	6.504e^-6	0.265	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17879223	3L_17879223_SNP [dm3] 3L_17886123_SNP [dm6]	G	T	6.772e^-6	0.27	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
3L	12414786	3L_12414786_SNP [dm3] 3L_12421686_SNP [dm6]	A	G	6.928e^-6	0.271	DOWNSTREAM toe INTERGENIC
3R	11835415	3R_11835415_SNP [dm3] 3R_16009693_SNP [dm6]	C	T	7.510e^-6	0.284	INTRON GATAe
3L	2370943	3L_2370943_SNP [dm3] 3L_2370943_SNP [dm6]	G	A	7.560e^-6	0.284	SYNONYMOUS_CODING CG1317	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	7.805e^-6	0.286	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	7.928e^-6	0.286	INTERGENIC
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	8.182e^-6	0.29	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1807164	3L_1807164_SNP [dm3] 3L_1807164_SNP [dm6]	C	T	8.640e^-6	0.3	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
3L	6913132	3L_6913132_SNP [dm3] 3L_6920032_SNP [dm6]	C	T	9.165e^-6	0.307	INTERGENIC
2L	8529262	2L_8529262_SNP [dm3] 2L_8529262_SNP [dm6]	T	C	9.178e^-6	0.307	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8514835	2L_8514835_SNP [dm3] 2L_8514835_SNP [dm6]	A	T	1.060e^-5	0.349	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12245783	3R_12245783_SNP [dm3] 3R_16420061_SNP [dm6]	G	C	1.138e^-5	0.368	INTERGENIC	regulatory region REDfly_CRMs
2R	14662730	2R_14662730_SNP [dm3] 2R_18775225_SNP [dm6]	C	G	1.167e^-5	0.371	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	1.374e^-5	0.411	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14105496	3R_14105496_SNP [dm3] 3R_18279774_SNP [dm6]	T	A	1.419e^-5	0.411	UPSTREAM CG7142 INTRON eIF-1A
2R	20120826	2R_20120826_SNP [dm3] 2R_24233303_SNP [dm6]	G	C	1.427e^-5	0.411	INTERGENIC
3L	16924617	3L_16924617_SNP [dm3] 3L_16931517_SNP [dm6]	A	G	1.436e^-5	0.411	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	17370907	2R_17370907_SNP [dm3] 2R_21483402_SNP [dm6]	A	G	1.463e^-5	0.411	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8515482	2L_8515482_SNP [dm3] 2L_8515482_SNP [dm6]	C	T	1.476e^-5	0.411	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8515314	2L_8515314_SNP [dm3] 2L_8515314_SNP [dm6]	A	C	1.493e^-5	0.411	UPSTREAM CG13097 INTRON PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14662727	2R_14662727_SNP [dm3] 2R_18775222_SNP [dm6]	A	C	1.504e^-5	0.411	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6913104	3L_6913104_SNP [dm3] 3L_6920004_SNP [dm6]	T	C	1.546e^-5	0.411	INTERGENIC
2L	8517273	2L_8517273_SNP [dm3] 2L_8517273_SNP [dm6]	A	G	1.557e^-5	0.411	NON_SYNONYMOUS_CODING mRpL51 UPSTREAM CG13090 DOWNSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	1.575e^-5	0.411	INTRON ome	regulatory region REDfly_CRMs
2L	12726794	2L_12726794_SNP [dm3] 2L_12726794_SNP [dm6]	C	T	1.585e^-5	0.411	SYNONYMOUS_CODING MRP
2L	8515658	2L_8515658_SNP [dm3] 2L_8515658_SNP [dm6]	G	A	1.592e^-5	0.411	NON_SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	1.601e^-5	0.411	INTRON CG17834	TF binding site mE1_TFBS_cad
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	1.639e^-5	0.413	INTRON CG9932
3R	23052589	3R_23052589_SNP [dm3] 3R_27226867_SNP [dm6]	G	T	1.652e^-5	0.413	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25909513	3R_25909513_SNP [dm3] 3R_30083791_SNP [dm6]	G	T	1.747e^-5	0.422	INTRON sima
3L	15712680	3L_15712680_SNP [dm3] 3L_15719580_SNP [dm6]	C	G	1.756e^-5	0.422	NON_SYNONYMOUS_CODING CG42570
2L	5197312	2L_5197312_SNP [dm3] 2L_5197312_SNP [dm6]	C	A	1.761e^-5	0.422	INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	8527887	2L_8527887_SNP [dm3] 2L_8527887_SNP [dm6]	C	A	1.789e^-5	0.422	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	1.800e^-5	0.422	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	1.850e^-5	0.424	INTERGENIC
2R	13863482	2R_13863482_SNP [dm3] 2R_17975977_SNP [dm6]	T	A	1.860e^-5	0.424	UTR_3_PRIME dpr13
2L	1966776	2L_1966776_SNP [dm3] 2L_1966776_SNP [dm6]	A	T	1.939e^-5	0.424	INTRON erm	TF binding site BDTNP1_TFBS_da
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	1.979e^-5	0.424	INTRON CG9932
2L	8526541	2L_8526541_SNP [dm3] 2L_8526541_SNP [dm6]	T	C	1.994e^-5	0.424	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others	TF binding site mE1_TFBS_cad
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	2.050e^-5	0.424	INTERGENIC
2L	13090763	2L_13090763_SNP [dm3] 2L_13090763_SNP [dm6]	C	T	2.067e^-5	0.424	DOWNSTREAM CR44197 INTERGENIC
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	2.081e^-5	0.424	INTERGENIC
3L	10378565	3L_10378565_SNP [dm3] 3L_10385465_SNP [dm6]	G	A	2.081e^-5	0.424	UPSTREAM CR45245 INTERGENIC
2L	6982127	2L_6982127_SNP [dm3] 2L_6982127_SNP [dm6]	G	A	2.086e^-5	0.424	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	8721158	3L_8721158_SNP [dm3] 3L_8728058_SNP [dm6]	C	A	2.088e^-5	0.424	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	2.123e^-5	0.424	INTRON Oamb
2L	19572941	2L_19572941_SNP [dm3] 2L_19572941_SNP [dm6]	C	G	2.139e^-5	0.424	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	14662687	2R_14662687_SNP [dm3] 2R_18775182_SNP [dm6]	T	C	2.143e^-5	0.424	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	2.147e^-5	0.424	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	2.170e^-5	0.424	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	2.248e^-5	0.428	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	2.253e^-5	0.428	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8679939	X_8679939_SNP [dm3] X_8785906_SNP [dm6]	C	A	2.270e^-5	0.428	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14662666	2R_14662666_DEL [dm3] 2R_18775161_DEL [dm6]	TT	T	2.305e^-5	0.428	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8442664	3L_8442664_SNP [dm3] 3L_8449564_SNP [dm6]	G	A	2.333e^-5	0.428	UPSTREAM Gug & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3102566	2L_3102566_SNP [dm3] 2L_3102566_SNP [dm6]	A	T	2.344e^-5	0.428	INTRON toc
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	2.351e^-5	0.428	INTERGENIC
2L	5194140	2L_5194140_SNP [dm3] 2L_5194140_SNP [dm6]	C	G	2.372e^-5	0.428	SYNONYMOUS_CODING Msp300 DOWNSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17158672	X_17158672_SNP [dm3] X_17264639_SNP [dm6]	G	A	2.413e^-5	0.431	UPSTREAM f INTRON f
2R	12803915	2R_12803915_SNP [dm3] 2R_16916410_SNP [dm6]	C	T	2.438e^-5	0.431	INTERGENIC
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	2.467e^-5	0.433	INTRON Oamb
2L	1482341	2L_1482341_SNP [dm3] 2L_1482341_SNP [dm6]	C	A	2.492e^-5	0.433	INTERGENIC
3L	6913158	3L_6913158_SNP [dm3] 3L_6920058_SNP [dm6]	G	T	2.529e^-5	0.435	INTERGENIC
3R	16572321	3R_16572321_SNP [dm3] 3R_20746599_SNP [dm6]	G	A	2.555e^-5	0.436	INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14662494	2R_14662494_SNP [dm3] 2R_18774989_SNP [dm6]	G	C	2.624e^-5	0.437	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	2.647e^-5	0.437	INTERGENIC
3R	5705681	3R_5705681_SNP [dm3] 3R_9879959_SNP [dm6]	G	A	2.719e^-5	0.437	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	14662733	2R_14662733_SNP [dm3] 2R_18775228_SNP [dm6]	T	A	2.722e^-5	0.437	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8515377	2L_8515377_SNP [dm3] 2L_8515377_SNP [dm6]	T	C	2.752e^-5	0.437	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	2.755e^-5	0.437	INTERGENIC
2L	16714969	2L_16714969_SNP [dm3] 2L_16714969_SNP [dm6]	C	A	2.759e^-5	0.437	UPSTREAM Cyt-c-d INTRON CG31808
2R	15475221	2R_15475221_SNP [dm3] 2R_19587716_SNP [dm6]	C	G	2.780e^-5	0.437	UTR_3_PRIME CG42878 INTRON sm
2L	8515461	2L_8515461_SNP [dm3] 2L_8515461_SNP [dm6]	T	C	2.798e^-5	0.437	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24514206	3R_24514206_SNP [dm3] 3R_28688484_SNP [dm6]	G	T	2.805e^-5	0.437	INTRON CG9990
3L	5284145	3L_5284145_SNP [dm3] 3L_5291045_SNP [dm6]	A	C	2.898e^-5	0.437	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22050007	3R_22050007_INS [dm3] 3R_26224285_INS [dm6]	G	GTTTCTCGATTATTCAG...	2.931e^-5	0.437	INTERGENIC
2R	18186684	2R_18186684_SNP [dm3] 2R_22299179_SNP [dm6]	T	C	2.996e^-5	0.437	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4881421	X_4881421_SNP [dm3] X_4987388_SNP [dm6]	G	A	3.004e^-5	0.437	INTRON CR44833	regulatory region REDfly_CRMs
3L	8161891	3L_8161891_SNP [dm3] 3L_8168791_SNP [dm6]	A	T	3.010e^-5	0.437	INTERGENIC
2R	14662799	2R_14662799_SNP [dm3] 2R_18775294_SNP [dm6]	C	A	3.013e^-5	0.437	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	3.014e^-5	0.437	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	3.019e^-5	0.437	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15475210	2R_15475210_SNP [dm3] 2R_19587705_SNP [dm6]	G	A	3.026e^-5	0.437	UTR_3_PRIME CG42878 INTRON sm
2L	8515386	2L_8515386_SNP [dm3] 2L_8515386_SNP [dm6]	T	C	3.037e^-5	0.437	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16924632	3L_16924632_SNP [dm3] 3L_16931532_SNP [dm6]	C	T	3.081e^-5	0.437	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
X	4839089	X_4839089_SNP [dm3] X_4945056_SNP [dm6]	A	G	3.099e^-5	0.437	INTRON Ptp4E
3R	4876994	3R_4876994_SNP [dm3] 3R_9051272_SNP [dm6]	A	T	3.103e^-5	0.437	NON_SYNONYMOUS_CODING Mst85C UPSTREAM Nmdmc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	3.129e^-5	0.437	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1964592	2L_1964592_SNP [dm3] 2L_1964592_SNP [dm6]	A	C	3.145e^-5	0.437	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	3.183e^-5	0.439	INTERGENIC
2R	13867788	2R_13867788_SNP [dm3] 2R_17980283_SNP [dm6]	A	T	3.282e^-5	0.444	INTRON dpr13
2R	13867801	2R_13867801_SNP [dm3] 2R_17980296_SNP [dm6]	A	C	3.282e^-5	0.444	INTRON dpr13
2L	16714981	2L_16714981_INS [dm3] 2L_16714981_INS [dm6]	G	GC	3.293e^-5	0.444	UPSTREAM Cyt-c-d INTRON CG31808
2L	8515266	2L_8515266_SNP [dm3] 2L_8515266_SNP [dm6]	A	G	3.321e^-5	0.445	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14662742	2R_14662742_SNP [dm3] 2R_18775237_SNP [dm6]	A	C	3.368e^-5	0.445	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662731	2R_14662731_SNP [dm3] 2R_18775226_SNP [dm6]	C	A	3.373e^-5	0.445	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16758087	3R_16758087_SNP [dm3] 3R_20932365_SNP [dm6]	T	G	3.389e^-5	0.445	INTRON CG31191
3R	14369965	3R_14369965_SNP [dm3] 3R_18544243_SNP [dm6]	G	A	3.431e^-5	0.445	INTRON fru
X	3270711	X_3270711_SNP [dm3] X_3376678_SNP [dm6]	A	C	3.440e^-5	0.445	INTRON dm & 1 other
3L	5342433	3L_5342433_SNP [dm3] 3L_5349333_SNP [dm6]	T	A	3.486e^-5	0.448	INTRON lama
2R	14662721	2R_14662721_SNP [dm3] 2R_18775216_SNP [dm6]	T	A	3.512e^-5	0.448	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14283118	3L_14283118_SNP [dm3] 3L_14290018_SNP [dm6]	T	C	3.602e^-5	0.456	INTRON fz
2L	1514228	2L_1514228_SNP [dm3] 2L_1514228_SNP [dm6]	C	T	3.748e^-5	0.472	INTERGENIC
3R	7727987	3R_7727987_SNP [dm3] 3R_11902265_SNP [dm6]	A	G	3.823e^-5	0.478	INTRON Cad87A
3R	26274796	3R_26274796_SNP [dm3] 3R_30449074_SNP [dm6]	G	A	3.965e^-5	0.492	SYNONYMOUS_CODING aralar1	TF binding site mE1_TFBS_chinmo
2L	8534074	2L_8534074_SNP [dm3] 2L_8534074_SNP [dm6]	C	T	3.989e^-5	0.492	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	608982	2L_608982_SNP [dm3] 2L_608982_SNP [dm6]	T	G	4.062e^-5	0.498	EXON CR43649
3L	8442830	3L_8442830_SNP [dm3] 3L_8449730_SNP [dm6]	C	T	4.120e^-5	0.502	UPSTREAM Gug & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
X	17166513	X_17166513_SNP [dm3] X_17272480_SNP [dm6]	G	A	4.153e^-5	0.503	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24514248	3R_24514248_SNP [dm3] 3R_28688526_SNP [dm6]	T	G	4.229e^-5	0.507	INTRON CG9990
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	4.256e^-5	0.507	INTERGENIC
3R	23673628	3R_23673628_SNP [dm3] 3R_27847906_SNP [dm6]	C	T	4.304e^-5	0.507	DOWNSTREAM Or98a INTRON CG34353
X	8796211	X_8796211_SNP [dm3] X_8902178_SNP [dm6]	G	A	4.319e^-5	0.507	SYNONYMOUS_CODING Rbm13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	4.353e^-5	0.507	INTRON Octbeta1R
2L	828675	2L_828675_SNP [dm3] 2L_828675_SNP [dm6]	C	G	4.355e^-5	0.507	INTRON dock	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18184246	2R_18184246_SNP [dm3] 2R_22296741_SNP [dm6]	T	C	4.462e^-5	0.517	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
3R	4903559	3R_4903559_SNP [dm3] 3R_9077837_SNP [dm6]	C	T	4.506e^-5	0.518	INTRON pum
2R	14662738	2R_14662738_SNP [dm3] 2R_18775233_SNP [dm6]	C	T	4.526e^-5	0.518	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	4.564e^-5	0.519	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	20193571	2R_20193571_SNP [dm3] 2R_24306048_SNP [dm6]	T	G	4.613e^-5	0.521	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14663073	2R_14663073_SNP [dm3] 2R_18775568_SNP [dm6]	A	G	4.640e^-5	0.521	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19420793	3L_19420793_SNP [dm3] 3L_19427693_SNP [dm6]	G	A	4.673e^-5	0.522	INTERGENIC
3L	8956651	3L_8956651_SNP [dm3] 3L_8963551_SNP [dm6]	C	T	4.795e^-5	0.532	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14140502	3L_14140502_SNP [dm3] 3L_14147402_SNP [dm6]	G	T	4.832e^-5	0.533	INTERGENIC	regulatory region REDfly_CRMs
2R	12803918	2R_12803918_SNP [dm3] 2R_16916413_SNP [dm6]	A	G	4.910e^-5	0.539	INTERGENIC
3L	3883241	3L_3883241_SNP [dm3] 3L_3883241_SNP [dm6]	T	A	4.939e^-5	0.539	INTERGENIC
2L	8522155	2L_8522155_SNP [dm3] 2L_8522155_SNP [dm6]	A	C	4.980e^-5	0.54	UTR_5_PRIME Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	5.055e^-5	0.545	INTRON GluClalpha
X	17166384	X_17166384_SNP [dm3] X_17272351_SNP [dm6]	T	C	5.169e^-5	0.551	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14140506	3L_14140506_SNP [dm3] 3L_14147406_SNP [dm6]	G	A	5.170e^-5	0.551	INTERGENIC	regulatory region REDfly_CRMs
2L	1639161	2L_1639161_SNP [dm3] 2L_1639161_SNP [dm6]	T	C	5.206e^-5	0.552	INTERGENIC
2L	8582612	2L_8582612_SNP [dm3] 2L_8582612_SNP [dm6]	A	G	5.247e^-5	0.553	INTRON Sema-1a
3R	12014548	3R_12014548_SNP [dm3] 3R_16188826_SNP [dm6]	C	T	5.399e^-5	0.562	INTRON sra
3R	7115019	3R_7115019_SNP [dm3] 3R_11289297_SNP [dm6]	T	C	5.411e^-5	0.562	INTRON CR31386
2L	14005335	2L_14005335_SNP [dm3] 2L_14005335_SNP [dm6]	A	G	5.419e^-5	0.562	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5193789	2L_5193789_SNP [dm3] 2L_5193789_SNP [dm6]	C	T	5.451e^-5	0.562	SYNONYMOUS_CODING Msp300 DOWNSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5313884	2R_5313884_SNP [dm3] 2R_9426379_SNP [dm6]	T	C	5.529e^-5	0.567	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3020162	X_3020162_SNP [dm3] X_3126129_SNP [dm6]	A	G	5.580e^-5	0.568	INTRON kirre
2L	3084548	2L_3084548_SNP [dm3] 2L_3084548_SNP [dm6]	G	A	5.614e^-5	0.568	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15581200	3R_15581200_DEL [dm3] 3R_19755478_DEL [dm6]	ATTTGTTCATACCACACATT...	A	5.704e^-5	0.568	INTRON GluClalpha
2L	9374837	2L_9374837_SNP [dm3] 2L_9374837_SNP [dm6]	C	A	5.708e^-5	0.568	DOWNSTREAM CR43865 INTRON Shawl
2L	1639185	2L_1639185_SNP [dm3] 2L_1639185_SNP [dm6]	C	T	5.717e^-5	0.568	INTERGENIC
3R	24990935	3R_24990935_SNP [dm3] 3R_29165213_SNP [dm6]	A	G	5.761e^-5	0.568	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3R	19920298	3R_19920298_SNP [dm3] 3R_24094576_SNP [dm6]	G	A	5.796e^-5	0.568	INTRON 4EHP
2L	6234590	2L_6234590_SNP [dm3] 2L_6234590_SNP [dm6]	A	G	5.806e^-5	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3558599	X_3558599_SNP [dm3] X_3664566_SNP [dm6]	C	G	5.840e^-5	0.568	SYNONYMOUS_CODING AstA-R1
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	5.847e^-5	0.568	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8721223	3L_8721223_SNP [dm3] 3L_8728123_SNP [dm6]	C	A	5.903e^-5	0.571	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	5.951e^-5	0.571	INTRON Oamb
3R	15475476	3R_15475476_INS [dm3] 3R_19649754_INS [dm6]	GT	AAATC	5.983e^-5	0.571		TF binding site mE1_TFBS_sens
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	6.026e^-5	0.571	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	9374839	2L_9374839_SNP [dm3] 2L_9374839_SNP [dm6]	G	A	6.051e^-5	0.571	DOWNSTREAM CR43865 INTRON Shawl
3L	5423850	3L_5423850_SNP [dm3] 3L_5430750_SNP [dm6]	G	A	6.062e^-5	0.571	INTRON CG34391
2R	18184240	2R_18184240_SNP [dm3] 2R_22296735_SNP [dm6]	T	C	6.148e^-5	0.577	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2L	12573175	2L_12573175_SNP [dm3] 2L_12573175_SNP [dm6]	A	G	6.185e^-5	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5181126	3R_5181126_INS [dm3] 3R_9355404_INS [dm6]	T	TAA	6.262e^-5	0.581	UPSTREAM CG45050 & 1 other DOWNSTREAM snoRNA:Me18S-G1358b INTRON CG45050
3L	8634326	3L_8634326_SNP [dm3] 3L_8641226_SNP [dm6]	C	T	6.357e^-5	0.585	INTRON Cpr66D
2R	17820101	2R_17820101_SNP [dm3] 2R_21932596_SNP [dm6]	T	G	6.359e^-5	0.585	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	6.390e^-5	0.585	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15784147	2R_15784147_SNP [dm3] 2R_19896642_SNP [dm6]	T	A	6.469e^-5	0.587	DOWNSTREAM CR44572 INTERGENIC
3R	4881188	3R_4881188_SNP [dm3] 3R_9055466_SNP [dm6]	C	A	6.541e^-5	0.587	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18252651	3R_18252651_SNP [dm3] 3R_22426929_SNP [dm6]	G	C	6.555e^-5	0.587	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16714961	2L_16714961_SNP [dm3] 2L_16714961_SNP [dm6]	T	A	6.565e^-5	0.587	UPSTREAM Cyt-c-d INTRON CG31808
3L	10446892	3L_10446892_SNP [dm3] 3L_10453792_SNP [dm6]	A	T	6.581e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11589944	2R_11589944_SNP [dm3] 2R_15702439_SNP [dm6]	A	G	6.602e^-5	0.587	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10188905	3R_10188905_SNP [dm3] 3R_14363183_SNP [dm6]	T	C	6.635e^-5	0.587	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18869010	3R_18869010_SNP [dm3] 3R_23043288_SNP [dm6]	T	G	6.720e^-5	0.589	UPSTREAM CG13837 DOWNSTREAM CG13838 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9252481	3L_9252481_SNP [dm3] 3L_9259381_SNP [dm6]	T	C	6.729e^-5	0.589	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15466925	3R_15466925_SNP [dm3] 3R_19641203_SNP [dm6]	C	T	6.792e^-5	0.589	UTR_5_PRIME subdued UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10446405	3L_10446405_SNP [dm3] 3L_10453305_SNP [dm6]	G	A	6.831e^-5	0.589	INTERGENIC
X	17166907	X_17166907_SNP [dm3] X_17272874_SNP [dm6]	T	G	6.834e^-5	0.589	INTRON f	TF binding site mE1_TFBS_cad
3L	5266323	3L_5266323_SNP [dm3] 3L_5273223_SNP [dm6]	T	A	6.867e^-5	0.589	UTR_5_PRIME shep INTRON shep
2L	3093512	2L_3093512_SNP [dm3] 2L_3093512_SNP [dm6]	T	C	6.900e^-5	0.589	INTRON toc
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	6.939e^-5	0.589	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8514811	2L_8514811_SNP [dm3] 2L_8514811_SNP [dm6]	C	T	6.946e^-5	0.589	UTR_5_PRIME CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	6.971e^-5	0.589	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25042173	3R_25042173_SNP [dm3] 3R_29216451_SNP [dm6]	T	C	7.042e^-5	0.592	UPSTREAM mir-996 DOWNSTREAM mir-279 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	15463196	3R_15463196_SNP [dm3] 3R_19637474_SNP [dm6]	A	G	7.073e^-5	0.592	SYNONYMOUS_CODING subdued
3R	17840876	3R_17840876_SNP [dm3] 3R_22015154_SNP [dm6]	A	G	7.199e^-5	0.6	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	6913200	3L_6913200_SNP [dm3] 3L_6920100_SNP [dm6]	A	G	7.282e^-5	0.604	INTERGENIC
3R	16758090	3R_16758090_SNP [dm3] 3R_20932368_SNP [dm6]	A	C	7.380e^-5	0.607	INTRON CG31191
2L	19572670	2L_19572670_SNP [dm3] 2L_19572670_SNP [dm6]	G	C	7.418e^-5	0.607	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1284531	2L_1284531_SNP [dm3] 2L_1284531_SNP [dm6]	C	T	7.429e^-5	0.607	INTRON robo3
3R	16531964	3R_16531964_SNP [dm3] 3R_20706242_SNP [dm6]	C	G	7.454e^-5	0.607	UTR_5_PRIME Oamb INTRON Oamb
3L	10445914	3L_10445914_SNP [dm3] 3L_10452814_SNP [dm6]	C	A	7.475e^-5	0.607	INTERGENIC
2L	8513167	2L_8513167_SNP [dm3] 2L_8513167_SNP [dm6]	C	T	7.514e^-5	0.607	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7984754	2L_7984754_SNP [dm3] 2L_7984754_SNP [dm6]	G	A	7.591e^-5	0.609	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3179256	X_3179256_SNP [dm3] X_3285223_SNP [dm6]	T	C	7.629e^-5	0.609	INTRON dnc
2L	8515362	2L_8515362_SNP [dm3] 2L_8515362_SNP [dm6]	T	G	7.653e^-5	0.609	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	7.657e^-5	0.609	INTERGENIC
2R	15475109	2R_15475109_SNP [dm3] 2R_19587604_SNP [dm6]	A	T	7.941e^-5	0.618	SYNONYMOUS_CODING CG42878 INTRON sm
2L	12727225	2L_12727225_SNP [dm3] 2L_12727225_SNP [dm6]	T	G	7.990e^-5	0.618	INTRON MRP
X	12201048	X_12201048_SNP [dm3] X_12307015_SNP [dm6]	C	G	8.024e^-5	0.618	INTRON Ten-a
2R	18276415	2R_18276415_SNP [dm3] 2R_22388910_SNP [dm6]	G	A	8.034e^-5	0.618	INTRON CG13506
2R	14362710	2R_14362710_SNP [dm3] 2R_18475205_SNP [dm6]	C	A	8.110e^-5	0.618	INTRON CG30116
3R	9398501	3R_9398501_SNP [dm3] 3R_13572779_SNP [dm6]	G	A	8.138e^-5	0.618	INTERGENIC
2L	8341464	2L_8341464_SNP [dm3] 2L_8341464_SNP [dm6]	T	C	8.145e^-5	0.618	UTR_3_PRIME CG14274
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	8.225e^-5	0.618	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	5128084	3R_5128084_SNP [dm3] 3R_9302362_SNP [dm6]	G	T	8.239e^-5	0.618	INTRON CG8861
2R	18182433	2R_18182433_SNP [dm3] 2R_22294928_SNP [dm6]	C	A	8.273e^-5	0.618	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_sens
2L	5199319	2L_5199319_SNP [dm3] 2L_5199319_SNP [dm6]	T	A	8.340e^-5	0.618	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	5199321	2L_5199321_SNP [dm3] 2L_5199321_SNP [dm6]	G	A	8.340e^-5	0.618	INTRON Msp300	TF binding site mE1_TFBS_cad
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	8.465e^-5	0.618	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	1452767	2L_1452767_SNP [dm3] 2L_1452767_SNP [dm6]	C	A	8.471e^-5	0.618	INTERGENIC
2L	12724589	2L_12724589_SNP [dm3] 2L_12724589_SNP [dm6]	C	T	8.509e^-5	0.618	SYNONYMOUS_CODING MRP INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	8.532e^-5	0.618	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	8.556e^-5	0.618	INTRON Edem2	TF binding site mE1_TFBS_cad
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	8.570e^-5	0.618	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2L	1286457	2L_1286457_SNP [dm3] 2L_1286457_SNP [dm6]	C	G	8.575e^-5	0.618	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1989529	2L_1989529_SNP [dm3] 2L_1989529_SNP [dm6]	C	T	8.578e^-5	0.618	DOWNSTREAM Npc2a EXON CR42874
X	17166558	X_17166558_SNP [dm3] X_17272525_SNP [dm6]	A	G	8.634e^-5	0.618	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8511667	2L_8511667_SNP [dm3] 2L_8511667_SNP [dm6]	C	G	8.692e^-5	0.618	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13558736	3R_13558736_SNP [dm3] 3R_17733014_SNP [dm6]	G	C	8.694e^-5	0.618	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	16335469	3L_16335469_SNP [dm3] 3L_16342369_SNP [dm6]	C	A	8.696e^-5	0.618	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10781177	3L_10781177_SNP [dm3] 3L_10788077_SNP [dm6]	G	C	8.720e^-5	0.618	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15584465	3R_15584465_SNP [dm3] 3R_19758743_SNP [dm6]	C	G	8.731e^-5	0.618	INTRON GluClalpha
3R	13558743	3R_13558743_SNP [dm3] 3R_17733021_SNP [dm6]	C	T	8.736e^-5	0.618	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	19024038	2R_19024038_SNP [dm3] 2R_23136515_SNP [dm6]	T	G	8.746e^-5	0.618	INTERGENIC
2L	1245080	2L_1245080_SNP [dm3] 2L_1245080_SNP [dm6]	G	A	8.776e^-5	0.618	INTERGENIC
3L	3883230	3L_3883230_SNP [dm3] 3L_3883230_SNP [dm6]	T	A	8.807e^-5	0.618	INTERGENIC
X	10854594	X_10854594_SNP [dm3] X_10960561_SNP [dm6]	G	T	8.823e^-5	0.618	INTRON Myo10A	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3439679	X_3439679_SNP [dm3] X_3545646_SNP [dm6]	G	A	8.825e^-5	0.618	DOWNSTREAM CR34335 INTRON CG32791
3R	11199622	3R_11199622_DEL [dm3] 3R_15373900_DEL [dm6]	GA	G	8.909e^-5	0.621	UTR_3_PRIME Ccm3 UPSTREAM Rbp
X	20613141	X_20613141_INS [dm3] X_20742114_INS [dm6]	C	CGCTTTTCC	9.040e^-5	0.624	INTERGENIC
2R	14662818	2R_14662818_SNP [dm3] 2R_18775313_SNP [dm6]	C	T	9.118e^-5	0.624	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662792	2R_14662792_SNP [dm3] 2R_18775287_SNP [dm6]	A	T	9.119e^-5	0.624	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2932881	2L_2932881_SNP [dm3] 2L_2932881_SNP [dm6]	A	T	9.138e^-5	0.624	INTRON lilli
3L	16900878	3L_16900878_SNP [dm3] 3L_16907778_SNP [dm6]	C	G	9.222e^-5	0.624	DOWNSTREAM Lmpt INTRON Lmpt
2L	5560560	2L_5560560_SNP [dm3] 2L_5560560_SNP [dm6]	A	T	9.331e^-5	0.624	INTRON GluRIIB
2L	7957353	2L_7957353_SNP [dm3] 2L_7957353_SNP [dm6]	G	T	9.331e^-5	0.624	INTRON Snoo
3L	7307474	3L_7307474_SNP [dm3] 3L_7314374_SNP [dm6]	T	A	9.332e^-5	0.624	INTERGENIC
2L	8513770	2L_8513770_SNP [dm3] 2L_8513770_SNP [dm6]	G	A	9.388e^-5	0.624	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8513779	2L_8513779_SNP [dm3] 2L_8513779_SNP [dm6]	T	C	9.388e^-5	0.624	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	9.393e^-5	0.624	INTRON CG13917
3R	22896879	3R_22896879_SNP [dm3] 3R_27071157_SNP [dm6]	T	C	9.429e^-5	0.624	INTERGENIC
2R	16363211	2R_16363211_SNP [dm3] 2R_20475706_SNP [dm6]	C	T	9.452e^-5	0.624	INTRON CG12484
2L	5560554	2L_5560554_DEL [dm3] 2L_5560554_DEL [dm6]	CATA	C	9.481e^-5	0.624	INTRON GluRIIB
3L	16903274	3L_16903274_SNP [dm3] 3L_16910174_SNP [dm6]	C	A	9.483e^-5	0.624	INTRON Lmpt
3L	16896794	3L_16896794_SNP [dm3] 3L_16903694_SNP [dm6]	G	A	9.521e^-5	0.624	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3R	4877609	3R_4877609_SNP [dm3] 3R_9051887_SNP [dm6]	T	A	9.541e^-5	0.624	UTR_3_PRIME Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14421595	3R_14421595_SNP [dm3] 3R_18595873_SNP [dm6]	G	C	9.572e^-5	0.624	INTRON qin & 1 other
2R	5705059	2R_5705059_SNP [dm3] 2R_9817554_SNP [dm6]	C	T	9.654e^-5	0.624	DOWNSTREAM lectin-46Cb INTRON CG1648 & 1 other
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	9.774e^-5	0.624	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	12722329	2L_12722329_SNP [dm3] 2L_12722329_SNP [dm6]	C	G	9.776e^-5	0.624	START_GAINED MRP UTR_5_PRIME MRP UPSTREAM CG5792 INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	9.887e^-5	0.624	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4875951	3R_4875951_SNP [dm3] 3R_9050229_SNP [dm6]	T	C	9.914e^-5	0.624	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	22199837	3R_22199837_SNP [dm3] 3R_26374115_SNP [dm6]	T	C	9.927e^-5	0.624	INTERGENIC
2L	8506197	2L_8506197_SNP [dm3] 2L_8506197_SNP [dm6]	T	C	9.985e^-5	0.624	INTRON Dh31
2L	16470343	2L_16470343_DEL [dm3] 2L_16470343_DEL [dm6]	GG	G	9.990e^-5	0.624	INTRON dac	regulatory region REDfly_CRMs
3L	2369059	3L_2369059_SNP [dm3] 3L_2369059_SNP [dm6]	G	A	9.993e^-5	0.624	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5566821	2L_5566821_SNP [dm3] 2L_5566821_SNP [dm6]	G	A	1.007e^-4	0.624	INTERGENIC
2L	5560580	2L_5560580_SNP [dm3] 2L_5560580_SNP [dm6]	A	T	1.015e^-4	0.624	INTRON GluRIIB
2R	19468287	2R_19468287_SNP [dm3] 2R_23580764_SNP [dm6]	A	T	1.018e^-4	0.624	UPSTREAM apt INTRON apt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18183550	2R_18183550_SNP [dm3] 2R_22296045_SNP [dm6]	C	G	1.021e^-4	0.624	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2L	19583489	2L_19583489_SNP [dm3] 2L_19583489_SNP [dm6]	C	A	1.023e^-4	0.624	NON_SYNONYMOUS_CODING CG10262 UPSTREAM CG10366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17405450	3L_17405450_SNP [dm3] 3L_17412350_SNP [dm6]	T	A	1.025e^-4	0.624	INTRON blot	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18075337	3R_18075337_SNP [dm3] 3R_22249615_SNP [dm6]	T	C	1.031e^-4	0.624	INTRON SKIP
2R	14663049	2R_14663049_SNP [dm3] 2R_18775544_SNP [dm6]	C	T	1.038e^-4	0.624	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
3R	15468950	3R_15468950_SNP [dm3] 3R_19643228_SNP [dm6]	T	C	1.039e^-4	0.624	UTR_3_PRIME Vha13 UPSTREAM subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3098465	3L_3098465_SNP [dm3] 3L_3098465_SNP [dm6]	T	C	1.040e^-4	0.624	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3R	5648561	3R_5648561_SNP [dm3] 3R_9822839_SNP [dm6]	T	C	1.042e^-4	0.624	DOWNSTREAM CG34302 INTERGENIC
3L	16333168	3L_16333168_SNP [dm3] 3L_16340068_SNP [dm6]	G	A	1.045e^-4	0.624	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10377628	3L_10377628_SNP [dm3] 3L_10384528_SNP [dm6]	G	A	1.048e^-4	0.624	INTERGENIC
3R	12706463	3R_12706463_SNP [dm3] 3R_16880741_SNP [dm6]	T	C	1.049e^-4	0.624	INTRON iab-8
2L	9783533	2L_9783533_SNP [dm3] 2L_9783533_SNP [dm6]	G	A	1.050e^-4	0.624	INTRON IP3K1	TF binding site mE1_TFBS_sens
2R	14662795	2R_14662795_SNP [dm3] 2R_18775290_SNP [dm6]	C	T	1.051e^-4	0.624	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20332003	3R_20332003_INS [dm3] 3R_24506281_INS [dm6]	A	ATT	1.052e^-4	0.624	INTERGENIC	transposable element FlyBase
3R	20332055	3R_20332055_SNP [dm3] 3R_24506333_SNP [dm6]	G	A	1.052e^-4	0.624	INTERGENIC
2R	18005133	2R_18005133_SNP [dm3] 2R_22117628_SNP [dm6]	A	C	1.055e^-4	0.624	INTRON Vrp1
3R	9356198	3R_9356198_SNP [dm3] 3R_13530476_SNP [dm6]	T	G	1.057e^-4	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23052621	3R_23052621_SNP [dm3] 3R_27226899_SNP [dm6]	A	T	1.059e^-4	0.624	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2374536	3L_2374536_SNP [dm3] 3L_2374536_SNP [dm6]	T	A	1.060e^-4	0.624	NON_SYNONYMOUS_CODING CG9004 UPSTREAM mRpL23	TF binding site mE1_TFBS_HSA
3L	10445858	3L_10445858_SNP [dm3] 3L_10452758_SNP [dm6]	G	A	1.061e^-4	0.624	INTERGENIC
2L	8714066	2L_8714066_SNP [dm3] 2L_8714066_SNP [dm6]	T	G	1.064e^-4	0.624	INTRON raw
3L	9253717	3L_9253717_SNP [dm3] 3L_9260617_SNP [dm6]	A	T	1.069e^-4	0.625	INTRON GluRIB
3L	16924704	3L_16924704_SNP [dm3] 3L_16931604_SNP [dm6]	T	C	1.082e^-4	0.627	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	1.083e^-4	0.627	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
X	3226219	X_3226219_SNP [dm3] X_3332186_SNP [dm6]	C	T	1.083e^-4	0.627	INTRON CR44886 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1639197	2L_1639197_INS [dm3] 2L_1639197_INS [dm6]	T	TTT	1.096e^-4	0.627	INTERGENIC
X	8875404	X_8875404_SNP [dm3] X_8981371_SNP [dm6]	T	A	1.099e^-4	0.627	INTRON rdgA & 1 other
3R	18330403	3R_18330403_SNP [dm3] 3R_22504681_SNP [dm6]	G	A	1.099e^-4	0.627	INTRON Octbeta1R
2R	14662593	2R_14662593_SNP [dm3] 2R_18775088_SNP [dm6]	C	T	1.100e^-4	0.627	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10375055	3R_10375055_DEL [dm3] 3R_14549333_DEL [dm6]	TT	T	1.103e^-4	0.627	INTRON Pde6
2L	8714067	2L_8714067_SNP [dm3] 2L_8714067_SNP [dm6]	T	A	1.119e^-4	0.627	INTRON raw
3R	15585753	3R_15585753_SNP [dm3] 3R_19760031_SNP [dm6]	T	C	1.126e^-4	0.627	INTRON GluClalpha
2L	3505633	2L_3505633_SNP [dm3] 2L_3505633_SNP [dm6]	T	G	1.127e^-4	0.627	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20331888	3R_20331888_SNP [dm3] 3R_24506166_SNP [dm6]	G	C	1.137e^-4	0.627	INTERGENIC	transposable element FlyBase
2L	11522362	2L_11522362_SNP [dm3] 2L_11522362_SNP [dm6]	C	T	1.137e^-4	0.627	SYNONYMOUS_CODING CG43153 DOWNSTREAM CG14929 & 1 other
3R	18192461	3R_18192461_SNP [dm3] 3R_22366739_SNP [dm6]	G	A	1.142e^-4	0.627	UPSTREAM CG5382 & 1 other INTRON CG5380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	13157739	3L_13157739_SNP [dm3] 3L_13164639_SNP [dm6]	G	A	1.142e^-4	0.627	INTERGENIC
2L	13112978	2L_13112978_SNP [dm3] 2L_13112978_SNP [dm6]	A	T	1.154e^-4	0.627	INTERGENIC
X	19735673	X_19735673_SNP [dm3] X_19841640_SNP [dm6]	A	G	1.155e^-4	0.627	INTRON pico	TF binding site BDTNP1_TFBS_da
2L	5560612	2L_5560612_SNP [dm3] 2L_5560612_SNP [dm6]	C	T	1.157e^-4	0.627	INTRON GluRIIB
2R	15658328	2R_15658328_SNP [dm3] 2R_19770823_SNP [dm6]	C	A	1.160e^-4	0.627	SPLICE_SITE_REGION Or56a INTRON Or56a
X	11074321	X_11074321_SNP [dm3] X_11180288_SNP [dm6]	C	T	1.166e^-4	0.627	INTERGENIC
3R	1604940	3R_1604940_SNP [dm3] 3R_5779218_SNP [dm6]	C	T	1.169e^-4	0.627	UPSTREAM jagn INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3101910	2L_3101910_SNP [dm3] 2L_3101910_SNP [dm6]	T	C	1.169e^-4	0.627	INTRON toc
2L	8513479	2L_8513479_SNP [dm3] 2L_8513479_SNP [dm6]	G	A	1.171e^-4	0.627	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14421648	3R_14421648_SNP [dm3] 3R_18595926_SNP [dm6]	A	T	1.173e^-4	0.627	INTRON qin & 1 other
3R	14421653	3R_14421653_SNP [dm3] 3R_18595931_SNP [dm6]	C	T	1.173e^-4	0.627	INTRON qin & 1 other
3L	2407441	3L_2407441_SNP [dm3] 3L_2407441_SNP [dm6]	C	T	1.180e^-4	0.627	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1498291	2L_1498291_SNP [dm3] 2L_1498291_SNP [dm6]	C	G	1.186e^-4	0.627	SYNONYMOUS_CODING CG31661 DOWNSTREAM CG18131	TF binding site mE1_TFBS_HSA
2L	1499918	2L_1499918_SNP [dm3] 2L_1499918_SNP [dm6]	C	T	1.186e^-4	0.627	SYNONYMOUS_CODING CG18131 UPSTREAM CR44064 DOWNSTREAM CG7420
2L	1505811	2L_1505811_SNP [dm3] 2L_1505811_SNP [dm6]	C	T	1.186e^-4	0.627	INTERGENIC
2L	1506264	2L_1506264_SNP [dm3] 2L_1506264_SNP [dm6]	G	C	1.186e^-4	0.627	INTERGENIC
2L	1508021	2L_1508021_SNP [dm3] 2L_1508021_SNP [dm6]	T	C	1.186e^-4	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1514481	2L_1514481_SNP [dm3] 2L_1514481_SNP [dm6]	T	A	1.186e^-4	0.627	INTERGENIC
2L	1514778	2L_1514778_SNP [dm3] 2L_1514778_SNP [dm6]	T	A	1.186e^-4	0.627	INTERGENIC
3L	6913031	3L_6913031_SNP [dm3] 3L_6919931_SNP [dm6]	A	C	1.190e^-4	0.627	INTERGENIC
3R	18079582	3R_18079582_SNP [dm3] 3R_22253860_SNP [dm6]	G	T	1.202e^-4	0.627	INTRON SKIP
3L	18304717	3L_18304717_SNP [dm3] 3L_18311617_SNP [dm6]	G	A	1.203e^-4	0.627	INTERGENIC
2R	14784794	2R_14784794_SNP [dm3] 2R_18897289_SNP [dm6]	A	C	1.204e^-4	0.627	INTRON sano
3R	23475233	3R_23475233_SNP [dm3] 3R_27649511_SNP [dm6]	C	T	1.208e^-4	0.627	UTR_5_PRIME tau INTRON tau
3L	9744730	3L_9744730_SNP [dm3] 3L_9751630_SNP [dm6]	T	A	1.210e^-4	0.627	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	13905636	X_13905636_SNP [dm3] X_14011603_SNP [dm6]	G	A	1.212e^-4	0.627	INTERGENIC
2L	14021464	2L_14021464_SNP [dm3] 2L_14021464_SNP [dm6]	T	C	1.215e^-4	0.627	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9720438	3L_9720438_DEL [dm3] 3L_9727338_DEL [dm6]	TACGAAT	T	1.215e^-4	0.627	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1504352	2L_1504352_SNP [dm3] 2L_1504352_SNP [dm6]	G	C	1.217e^-4	0.627	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14524115	3R_14524115_SNP [dm3] 3R_18698393_SNP [dm6]	G	T	1.227e^-4	0.627	INTERGENIC
3R	13390798	3R_13390798_SNP [dm3] 3R_17565076_SNP [dm6]	A	T	1.230e^-4	0.627	INTRON Hmx
2L	8512797	2L_8512797_SNP [dm3] 2L_8512797_SNP [dm6]	G	T	1.230e^-4	0.627	UPSTREAM CG13096 INTRON CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5560599	2L_5560599_SNP [dm3] 2L_5560599_SNP [dm6]	C	A	1.241e^-4	0.627	INTRON GluRIIB
2R	18015169	2R_18015169_SNP [dm3] 2R_22127664_SNP [dm6]	A	G	1.242e^-4	0.627	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	23052532	3R_23052532_SNP [dm3] 3R_27226810_SNP [dm6]	T	G	1.243e^-4	0.627	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12202203	X_12202203_SNP [dm3] X_12308170_SNP [dm6]	T	C	1.244e^-4	0.627	INTRON Ten-a
2R	18292477	2R_18292477_SNP [dm3] 2R_22404972_SNP [dm6]	G	A	1.247e^-4	0.627	INTRON CG6044	TF binding site mE1_TFBS_Trl
2L	16543927	2L_16543927_DEL [dm3] 2L_16543927_DEL [dm6]	TCAAGTTATT	T	1.248e^-4	0.627	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22433495	3R_22433495_SNP [dm3] 3R_26607773_SNP [dm6]	A	G	1.250e^-4	0.627	EXON CR44951
3R	10188809	3R_10188809_SNP [dm3] 3R_14363087_SNP [dm6]	G	T	1.259e^-4	0.628	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15982085	3R_15982085_SNP [dm3] 3R_20156363_SNP [dm6]	T	C	1.259e^-4	0.628	INTERGENIC
3L	16329407	3L_16329407_SNP [dm3] 3L_16336307_SNP [dm6]	G	A	1.264e^-4	0.628	INTERGENIC
2L	530772	2L_530772_SNP [dm3] 2L_530772_SNP [dm6]	A	G	1.266e^-4	0.628	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	1502385	2L_1502385_SNP [dm3] 2L_1502385_SNP [dm6]	G	C	1.271e^-4	0.629	INTRON CR44064 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	16375118	3R_16375118_SNP [dm3] 3R_20549396_SNP [dm6]	A	G	1.277e^-4	0.629	INTRON Stat92E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3303966	2L_3303966_SNP [dm3] 2L_3303966_SNP [dm6]	G	C	1.278e^-4	0.629	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18015182	2R_18015182_SNP [dm3] 2R_22127677_SNP [dm6]	C	T	1.282e^-4	0.63	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	13812732	2R_13812732_SNP [dm3] 2R_17925227_SNP [dm6]	G	C	1.293e^-4	0.633	NON_SYNONYMOUS_CODING Elk
3L	16329610	3L_16329610_SNP [dm3] 3L_16336510_SNP [dm6]	T	C	1.305e^-4	0.636	INTERGENIC
2L	5199326	2L_5199326_SNP [dm3] 2L_5199326_SNP [dm6]	C	T	1.311e^-4	0.636	INTRON Msp300	TF binding site mE1_TFBS_cad
2R	18189299	2R_18189299_SNP [dm3] 2R_22301794_SNP [dm6]	G	A	1.314e^-4	0.636	UPSTREAM wdp INTRON wdp
X	12201684	X_12201684_SNP [dm3] X_12307651_SNP [dm6]	C	G	1.317e^-4	0.636	INTRON Ten-a
2L	1746146	2L_1746146_SNP [dm3] 2L_1746146_SNP [dm6]	C	A	1.318e^-4	0.636	INTRON CG17646
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	1.320e^-4	0.636	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	1.323e^-4	0.636	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4564365	X_4564365_DEL [dm3] X_4670332_DEL [dm6]	CACGCAC	C	1.332e^-4	0.636	INTRON rap
3R	11128765	3R_11128765_SNP [dm3] 3R_15303043_SNP [dm6]	T	C	1.334e^-4	0.636	INTRON Tm1
3L	13058142	3L_13058142_SNP [dm3] 3L_13065042_SNP [dm6]	C	A	1.338e^-4	0.636	INTERGENIC
2L	8515387	2L_8515387_SNP [dm3] 2L_8515387_SNP [dm6]	C	T	1.341e^-4	0.636	SYNONYMOUS_CODING PIG-U UPSTREAM CG13097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23266448	3R_23266448_SNP [dm3] 3R_27440726_SNP [dm6]	A	C	1.352e^-4	0.636	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	16387981	3R_16387981_SNP [dm3] 3R_20562259_SNP [dm6]	A	T	1.353e^-4	0.636	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5828943	X_5828943_SNP [dm3] X_5934910_SNP [dm6]	T	C	1.356e^-4	0.636	INTRON CG3726
3R	25002784	3R_25002784_SNP [dm3] 3R_29177062_SNP [dm6]	T	C	1.357e^-4	0.636	INTRON CG14509
3R	13390784	3R_13390784_SNP [dm3] 3R_17565062_SNP [dm6]	T	G	1.358e^-4	0.636	INTRON Hmx
2R	10774811	2R_10774811_SNP [dm3] 2R_14887306_SNP [dm6]	G	T	1.362e^-4	0.636	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
3L	14140323	3L_14140323_SNP [dm3] 3L_14147223_SNP [dm6]	T	C	1.364e^-4	0.636	INTERGENIC	regulatory region REDfly_CRMs
3L	14140537	3L_14140537_SNP [dm3] 3L_14147437_SNP [dm6]	T	C	1.365e^-4	0.636	INTERGENIC	regulatory region REDfly_CRMs
2L	2039417	2L_2039417_SNP [dm3] 2L_2039417_SNP [dm6]	T	G	1.374e^-4	0.636	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
2L	1284576	2L_1284576_SNP [dm3] 2L_1284576_SNP [dm6]	C	A	1.375e^-4	0.636	INTRON robo3
2R	7587996	2R_7587996_SNP [dm3] 2R_11700491_SNP [dm6]	T	C	1.378e^-4	0.636	UPSTREAM Ir48a DOWNSTREAM Ir48b INTERGENIC
3L	14289841	3L_14289841_SNP [dm3] 3L_14296741_SNP [dm6]	T	G	1.384e^-4	0.636	INTRON fz
3L	19418798	3L_19418798_SNP [dm3] 3L_19425698_SNP [dm6]	T	A	1.385e^-4	0.636	DOWNSTREAM CR42838 INTERGENIC
2L	13707180	2L_13707180_SNP [dm3] 2L_13707180_SNP [dm6]	A	C	1.388e^-4	0.636	INTRON CG31814
3L	19420281	3L_19420281_SNP [dm3] 3L_19427181_SNP [dm6]	C	T	1.390e^-4	0.636	INTERGENIC
2L	3128321	2L_3128321_SNP [dm3] 2L_3128321_SNP [dm6]	C	A	1.390e^-4	0.636	UPSTREAM CG15403 INTRON toc
2L	5560582	2L_5560582_SNP [dm3] 2L_5560582_SNP [dm6]	G	T	1.395e^-4	0.637	INTRON GluRIIB
2R	5313925	2R_5313925_SNP [dm3] 2R_9426420_SNP [dm6]	G	A	1.416e^-4	0.639	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8582613	2L_8582613_INS [dm3] 2L_8582613_INS [dm6]	A	AAAT	1.418e^-4	0.639	INTRON Sema-1a
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	1.420e^-4	0.639	INTRON dpr13
X	19737729	X_19737729_SNP [dm3] X_19843696_SNP [dm6]	A	G	1.422e^-4	0.639	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	17651763	3R_17651763_SNP [dm3] 3R_21826041_SNP [dm6]	G	A	1.422e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	1.425e^-4	0.639	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	1513859	2L_1513859_SNP [dm3] 2L_1513859_SNP [dm6]	A	C	1.426e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4881211	3R_4881211_SNP [dm3] 3R_9055489_SNP [dm6]	T	C	1.427e^-4	0.639	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	13812730	2R_13812730_SNP [dm3] 2R_17925225_SNP [dm6]	G	A	1.442e^-4	0.64	SYNONYMOUS_CODING Elk
3R	15982082	3R_15982082_SNP [dm3] 3R_20156360_SNP [dm6]	T	A	1.445e^-4	0.64	INTERGENIC
2R	9969817	2R_9969817_SNP [dm3] 2R_14082312_SNP [dm6]	G	A	1.447e^-4	0.64	INTRON Prosap
3R	15467561	3R_15467561_SNP [dm3] 3R_19641839_SNP [dm6]	A	G	1.455e^-4	0.64	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14533962	3R_14533962_SNP [dm3] 3R_18708240_SNP [dm6]	G	A	1.457e^-4	0.64	INTRON VAChT & 1 other
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	1.458e^-4	0.64	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2R	18798021	2R_18798021_SNP [dm3] 2R_22910498_SNP [dm6]	A	G	1.462e^-4	0.64	INTRON nahoda
3R	14421647	3R_14421647_SNP [dm3] 3R_18595925_SNP [dm6]	G	A	1.473e^-4	0.64	INTRON qin & 1 other
3R	14604240	3R_14604240_DEL [dm3] 3R_18778518_DEL [dm6]	CAAC	C	1.475e^-4	0.64	INTRON CG7720
3L	10377660	3L_10377660_SNP [dm3] 3L_10384560_SNP [dm6]	C	G	1.475e^-4	0.64	INTERGENIC
2R	13551510	2R_13551510_SNP [dm3] 2R_17664005_SNP [dm6]	C	T	1.477e^-4	0.64	INTRON CCHa1-R
2L	2941421	2L_2941421_INS [dm3] 2L_2941421_INS [dm6]	T	TCT	1.479e^-4	0.64	INTRON lilli	TF binding site mE1_TFBS_inv
2L	12728181	2L_12728181_SNP [dm3] 2L_12728181_SNP [dm6]	C	T	1.479e^-4	0.64	SYNONYMOUS_CODING MRP INTRON MRP
2R	17592510	2R_17592510_SNP [dm3] 2R_21705005_SNP [dm6]	C	T	1.480e^-4	0.64	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13548742	2R_13548742_SNP [dm3] 2R_17661237_SNP [dm6]	A	G	1.480e^-4	0.64	INTRON CCHa1-R
2L	18584998	2L_18584998_SNP [dm3] 2L_18584998_SNP [dm6]	A	G	1.486e^-4	0.641	INTRON Pde11
2L	7003069	2L_7003069_SNP [dm3] 2L_7003069_SNP [dm6]	C	A	1.496e^-4	0.642	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	14657429	2L_14657429_SNP [dm3] 2L_14657429_SNP [dm6]	A	C	1.497e^-4	0.642	INTRON osp	TF binding site mE1_TFBS_inv
3L	15074609	3L_15074609_SNP [dm3] 3L_15081509_SNP [dm6]	G	T	1.515e^-4	0.647	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10198726	3L_10198726_SNP [dm3] 3L_10205626_SNP [dm6]	C	G	1.516e^-4	0.647	EXON CR44538
X	12201972	X_12201972_DEL [dm3] X_12307939_DEL [dm6]	GTTTCAG	G	1.519e^-4	0.647	INTRON Ten-a
2L	1285468	2L_1285468_SNP [dm3] 2L_1285468_SNP [dm6]	T	G	1.552e^-4	0.656	INTRON robo3
3R	14125359	3R_14125359_SNP [dm3] 3R_18299637_SNP [dm6]	T	C	1.553e^-4	0.656	SYNONYMOUS_CODING Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	19112790	X_19112790_SNP [dm3] X_19218757_SNP [dm6]	G	C	1.555e^-4	0.656	INTERGENIC
X	19112795	X_19112795_SNP [dm3] X_19218762_SNP [dm6]	T	G	1.555e^-4	0.656	INTERGENIC
2L	8512075	2L_8512075_SNP [dm3] 2L_8512075_SNP [dm6]	A	T	1.564e^-4	0.656	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	14103149	3R_14103149_SNP [dm3] 3R_18277427_SNP [dm6]	A	G	1.567e^-4	0.656	DOWNSTREAM CG7142 INTRON eIF-1A
2L	12554476	2L_12554476_SNP [dm3] 2L_12554476_SNP [dm6]	T	C	1.569e^-4	0.656	INTERGENIC
3L	7981165	3L_7981165_SNP [dm3] 3L_7988065_SNP [dm6]	C	G	1.571e^-4	0.656	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	8161804	3L_8161804_DEL [dm3] 3L_8168704_DEL [dm6]	CTG	C	1.572e^-4	0.656	INTERGENIC
3L	10198493	3L_10198493_SNP [dm3] 3L_10205393_SNP [dm6]	T	A	1.582e^-4	0.656	UPSTREAM CR44538 INTERGENIC
3L	10198494	3L_10198494_DEL [dm3] 3L_10205394_DEL [dm6]	AG	A	1.582e^-4	0.656	UPSTREAM CR44538 INTERGENIC
3R	15467245	3R_15467245_SNP [dm3] 3R_19641523_SNP [dm6]	G	T	1.582e^-4	0.656	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9316299	2L_9316299_SNP [dm3] 2L_9316299_SNP [dm6]	G	A	1.592e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	14369936	3R_14369936_SNP [dm3] 3R_18544214_SNP [dm6]	G	C	1.606e^-4	0.656	INTRON fru
2R	17858195	2R_17858195_SNP [dm3] 2R_21970690_SNP [dm6]	A	C	1.606e^-4	0.656	DOWNSTREAM CG34029 & 1 other INTERGENIC
3L	10198722	3L_10198722_SNP [dm3] 3L_10205622_SNP [dm6]	T	C	1.608e^-4	0.656	EXON CR44538
2L	19573282	2L_19573282_SNP [dm3] 2L_19573282_SNP [dm6]	C	T	1.614e^-4	0.656	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	15037481	2R_15037481_SNP [dm3] 2R_19149976_SNP [dm6]	C	G	1.614e^-4	0.656	INTRON ena
3L	10198694	3L_10198694_SNP [dm3] 3L_10205594_SNP [dm6]	T	A	1.617e^-4	0.656	UPSTREAM CR44538 INTERGENIC
X	19737942	X_19737942_SNP [dm3] X_19843909_SNP [dm6]	A	G	1.618e^-4	0.656	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12962495	2L_12962495_INS [dm3] 2L_12962495_INS [dm6]	T	TT	1.619e^-4	0.656	INTERGENIC
2R	20358977	2R_20358977_SNP [dm3] 2R_24471454_SNP [dm6]	T	C	1.619e^-4	0.656	INTRON CG13579
X	4832505	X_4832505_SNP [dm3] X_4938472_SNP [dm6]	A	G	1.637e^-4	0.656	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16521724	3R_16521724_SNP [dm3] 3R_20696002_SNP [dm6]	C	T	1.642e^-4	0.656	INTRON Oamb
3L	7307472	3L_7307472_SNP [dm3] 3L_7314372_SNP [dm6]	C	G	1.646e^-4	0.656	INTERGENIC
X	18164774	X_18164774_INS [dm3] X_18270741_INS [dm6]	C	CCC	1.649e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10198708	3L_10198708_SNP [dm3] 3L_10205608_SNP [dm6]	T	A	1.653e^-4	0.656	UPSTREAM CR44538 INTERGENIC
X	17166755	X_17166755_SNP [dm3] X_17272722_SNP [dm6]	A	G	1.659e^-4	0.656	INTRON f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12728637	2L_12728637_SNP [dm3] 2L_12728637_SNP [dm6]	T	A	1.660e^-4	0.656	NON_SYNONYMOUS_CODING MRP INTRON MRP
2R	3418973	2R_3418973_SNP [dm3] 2R_7531468_SNP [dm6]	A	C	1.666e^-4	0.656	UPSTREAM Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15037500	2R_15037500_SNP [dm3] 2R_19149995_SNP [dm6]	A	G	1.672e^-4	0.656	INTRON ena
2R	8350195	2R_8350195_SNP [dm3] 2R_12462690_SNP [dm6]	T	C	1.675e^-4	0.656	INTRON Lac
2L	7786336	2L_7786336_SNP [dm3] 2L_7786336_SNP [dm6]	A	T	1.676e^-4	0.656	UTR_3_PRIME CG7149 DOWNSTREAM CG7154
2L	9375065	2L_9375065_SNP [dm3] 2L_9375065_SNP [dm6]	T	G	1.679e^-4	0.656	INTRON Shawl
3L	18379080	3L_18379080_DEL [dm3] 3L_18385980_DEL [dm6]	TAT	T	1.684e^-4	0.656	INTERGENIC
2R	5313732	2R_5313732_SNP [dm3] 2R_9426227_SNP [dm6]	T	G	1.687e^-4	0.656	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	1.690e^-4	0.656	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3R	10375300	3R_10375300_SNP [dm3] 3R_14549578_SNP [dm6]	T	A	1.693e^-4	0.656	INTRON Pde6
3L	9252516	3L_9252516_SNP [dm3] 3L_9259416_SNP [dm6]	T	C	1.693e^-4	0.656	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14662928	2R_14662928_SNP [dm3] 2R_18775423_SNP [dm6]	G	C	1.694e^-4	0.656	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12937694	3L_12937694_SNP [dm3] 3L_12944594_SNP [dm6]	A	C	1.695e^-4	0.656	INTERGENIC
X	21923771	X_21923771_SNP [dm3] X_22521935_SNP [dm6]	A	C	1.697e^-4	0.656	INTRON CG17600	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	2553646	3L_2553646_SNP [dm3] 3L_2553646_SNP [dm6]	G	C	1.698e^-4	0.656	INTRON Spn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3R	21460785	3R_21460785_SNP [dm3] 3R_25635063_SNP [dm6]	C	T	1.699e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20332208	3R_20332208_SNP [dm3] 3R_24506486_SNP [dm6]	T	C	1.704e^-4	0.656	INTERGENIC
3R	15466346	3R_15466346_SNP [dm3] 3R_19640624_SNP [dm6]	T	A	1.705e^-4	0.656	INTRON subdued	TF binding site mE1_TFBS_Trl
3L	9411247	3L_9411247_SNP [dm3] 3L_9418147_SNP [dm6]	A	C	1.705e^-4	0.656	UPSTREAM CG3982 INTRON CG3967
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	1.706e^-4	0.656	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	16324707	3R_16324707_SNP [dm3] 3R_20498985_SNP [dm6]	G	A	1.715e^-4	0.656	INTERGENIC
3L	10198469	3L_10198469_SNP [dm3] 3L_10205369_SNP [dm6]	C	A	1.716e^-4	0.656	UPSTREAM CR44538 INTERGENIC
2L	5564340	2L_5564340_SNP [dm3] 2L_5564340_SNP [dm6]	T	C	1.719e^-4	0.656	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2L	14005336	2L_14005336_SNP [dm3] 2L_14005336_SNP [dm6]	G	T	1.720e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6653660	3R_6653660_SNP [dm3] 3R_10827938_SNP [dm6]	G	A	1.723e^-4	0.656	UTR_5_PRIME Cad86C INTRON Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14486425	3L_14486425_SNP [dm3] 3L_14493325_SNP [dm6]	A	G	1.744e^-4	0.659	INTRON bbg
3L	18304720	3L_18304720_SNP [dm3] 3L_18311620_SNP [dm6]	C	T	1.754e^-4	0.659	INTERGENIC
3R	25909499	3R_25909499_DEL [dm3] 3R_30083777_DEL [dm6]	ATGTGAACCA	A	1.755e^-4	0.659	INTRON sima
X	19098921	X_19098921_SNP [dm3] X_19204888_SNP [dm6]	G	A	1.756e^-4	0.659	SYNONYMOUS_CODING Ulp1
3L	10198541	3L_10198541_SNP [dm3] 3L_10205441_SNP [dm6]	A	T	1.757e^-4	0.659	UPSTREAM CR44538 INTERGENIC
3L	10266166	3L_10266166_SNP [dm3] 3L_10273066_SNP [dm6]	C	T	1.757e^-4	0.659	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	5181777	3L_5181777_SNP [dm3] 3L_5188677_SNP [dm6]	C	G	1.759e^-4	0.659	INTRON shep	TF binding site BDTNP1_TFBS_twi
3R	16574761	3R_16574761_SNP [dm3] 3R_20749039_SNP [dm6]	C	A	1.760e^-4	0.659	UTR_5_PRIME Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10963918	3L_10963918_SNP [dm3] 3L_10970818_SNP [dm6]	A	T	1.766e^-4	0.66	INTERGENIC
2L	7263760	2L_7263760_SNP [dm3] 2L_7263760_SNP [dm6]	T	C	1.771e^-4	0.66	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5325636	3L_5325636_SNP [dm3] 3L_5332536_SNP [dm6]	G	A	1.777e^-4	0.66	INTERGENIC
3R	15462950	3R_15462950_SNP [dm3] 3R_19637228_SNP [dm6]	G	A	1.781e^-4	0.66	SYNONYMOUS_CODING subdued
3L	10848245	3L_10848245_DEL [dm3] 3L_10855145_DEL [dm6]	AACATGTAAAATACAAA...	A	1.787e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7728056	3R_7728056_DEL [dm3] 3R_11902334_DEL [dm6]	TT	T	1.791e^-4	0.66	INTRON Cad87A
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	1.803e^-4	0.66	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	1.804e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25901956	3R_25901956_SNP [dm3] 3R_30076234_SNP [dm6]	T	C	1.805e^-4	0.66	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7984202	2L_7984202_SNP [dm3] 2L_7984202_SNP [dm6]	G	C	1.809e^-4	0.66	UTR_5_PRIME CG7231 UPSTREAM Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13775063	3R_13775063_SNP [dm3] 3R_17949341_SNP [dm6]	G	A	1.811e^-4	0.66	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	15468405	3R_15468405_SNP [dm3] 3R_19642683_SNP [dm6]	G	T	1.816e^-4	0.66	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18182284	2R_18182284_SNP [dm3] 2R_22294779_SNP [dm6]	C	T	1.825e^-4	0.66	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_sens
2L	8341490	2L_8341490_SNP [dm3] 2L_8341490_SNP [dm6]	A	T	1.829e^-4	0.66	UTR_3_PRIME CG14274
2L	7957345	2L_7957345_SNP [dm3] 2L_7957345_SNP [dm6]	T	C	1.835e^-4	0.66	INTRON Snoo
3R	24382559	3R_24382559_SNP [dm3] 3R_28556837_SNP [dm6]	G	A	1.838e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13070975	2L_13070975_SNP [dm3] 2L_13070975_SNP [dm6]	A	G	1.838e^-4	0.66	INTERGENIC
2R	19256787	2R_19256787_SNP [dm3] 2R_23369264_SNP [dm6]	A	G	1.838e^-4	0.66	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	13364358	2R_13364358_SNP [dm3] 2R_17476853_SNP [dm6]	T	A	1.838e^-4	0.66	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	1.845e^-4	0.66	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3R	16522433	3R_16522433_SNP [dm3] 3R_20696711_SNP [dm6]	G	A	1.848e^-4	0.66	INTRON Oamb
3L	7981174	3L_7981174_SNP [dm3] 3L_7988074_SNP [dm6]	T	G	1.850e^-4	0.66	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	18388642	3R_18388642_SNP [dm3] 3R_22562920_SNP [dm6]	A	G	1.851e^-4	0.66	UPSTREAM CG5278 INTERGENIC
3L	11348357	3L_11348357_SNP [dm3] 3L_11355257_SNP [dm6]	A	T	1.854e^-4	0.66	INTERGENIC
2R	14529093	2R_14529093_DEL [dm3] 2R_18641588_DEL [dm6]	AA	A	1.864e^-4	0.66	DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
2R	11642021	2R_11642021_SNP [dm3] 2R_15754516_SNP [dm6]	A	T	1.870e^-4	0.66	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11642043	2R_11642043_SNP [dm3] 2R_15754538_SNP [dm6]	T	C	1.870e^-4	0.66	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3080883	2L_3080883_SNP [dm3] 2L_3080883_SNP [dm6]	T	A	1.876e^-4	0.66	NON_SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14657433	2L_14657433_DEL [dm3] 2L_14657433_DEL [dm6]	AG	A	1.877e^-4	0.66	INTRON osp	TF binding site mE1_TFBS_inv
3R	15467744	3R_15467744_SNP [dm3] 3R_19642022_SNP [dm6]	C	T	1.880e^-4	0.66	UPSTREAM subdued DOWNSTREAM Vha13 INTRON subdued	TF binding site BDTNP1_TFBS_dl
3R	15411186	3R_15411186_SNP [dm3] 3R_19585464_SNP [dm6]	T	G	1.885e^-4	0.66	UTR_5_PRIME Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8582667	2L_8582667_SNP [dm3] 2L_8582667_SNP [dm6]	G	T	1.891e^-4	0.66	INTRON Sema-1a
2L	8582673	2L_8582673_SNP [dm3] 2L_8582673_SNP [dm6]	T	A	1.891e^-4	0.66	INTRON Sema-1a
2R	8457226	2R_8457226_SNP [dm3] 2R_12569721_SNP [dm6]	T	C	1.892e^-4	0.66	SYNONYMOUS_CODING Ak6 UPSTREAM stil DOWNSTREAM Cyp301a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2684324	3L_2684324_SNP [dm3] 3L_2684324_SNP [dm6]	A	C	1.894e^-4	0.66	INTRON Fife
3L	12897596	3L_12897596_SNP [dm3] 3L_12904496_SNP [dm6]	G	T	1.901e^-4	0.66	UPSTREAM CG32117 INTERGENIC
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	1.902e^-4	0.66	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	13100203	2L_13100203_SNP [dm3] 2L_13100203_SNP [dm6]	A	G	1.903e^-4	0.66	INTERGENIC
3R	7200767	3R_7200767_SNP [dm3] 3R_11375045_SNP [dm6]	C	T	1.907e^-4	0.66	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8844673	3L_8844673_SNP [dm3] 3L_8851573_SNP [dm6]	G	C	1.912e^-4	0.66	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	10198513	3L_10198513_INS [dm3] 3L_10205413_INS [dm6]	G	GATCT	1.914e^-4	0.66	UPSTREAM CR44538 INTERGENIC
2R	19462516	2R_19462516_DEL [dm3] 2R_23574993_DEL [dm6]	GAATGAATGATGCG...	G	1.916e^-4	0.66	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19127135	2R_19127135_SNP [dm3] 2R_23239612_SNP [dm6]	T	A	1.928e^-4	0.66	INTERGENIC
2L	5560395	2L_5560395_SNP [dm3] 2L_5560395_SNP [dm6]	A	G	1.929e^-4	0.66	NON_SYNONYMOUS_CODING GluRIIB
3L	10198688	3L_10198688_SNP [dm3] 3L_10205588_SNP [dm6]	A	T	1.930e^-4	0.66	UPSTREAM CR44538 INTERGENIC
3R	10092872	3R_10092872_SNP [dm3] 3R_14267150_SNP [dm6]	T	C	1.935e^-4	0.66	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18129421	3R_18129421_SNP [dm3] 3R_22303699_SNP [dm6]	T	G	1.941e^-4	0.66	UTR_3_PRIME CG7084
2L	13925332	2L_13925332_SNP [dm3] 2L_13925332_SNP [dm6]	G	T	1.944e^-4	0.66	INTRON Ance-3
2R	12602298	2R_12602298_SNP [dm3] 2R_16714793_SNP [dm6]	C	T	1.949e^-4	0.66	INTRON CG30463
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	1.950e^-4	0.66	INTERGENIC
2L	8120568	2L_8120568_SNP [dm3] 2L_8120568_SNP [dm6]	G	A	1.953e^-4	0.66	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3890993	2L_3890993_SNP [dm3] 2L_3890993_SNP [dm6]	T	G	1.957e^-4	0.66	UPSTREAM capu INTRON capu
3L	5963421	3L_5963421_SNP [dm3] 3L_5970321_SNP [dm6]	A	G	1.957e^-4	0.66	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4103373	3L_4103373_SNP [dm3] 3L_4103373_SNP [dm6]	A	G	1.957e^-4	0.66	UPSTREAM CG14995 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18356003	X_18356003_SNP [dm3] X_18461970_SNP [dm6]	G	T	1.958e^-4	0.66	INTRON CG32547 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17697053	3R_17697053_SNP [dm3] 3R_21871331_SNP [dm6]	A	T	1.964e^-4	0.66	UPSTREAM CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8512125	2L_8512125_INS [dm3] 2L_8512125_INS [dm6]	T	TCGATTCAAACTCATGCTAA...	1.966e^-4	0.66	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	14021455	2L_14021455_SNP [dm3] 2L_14021455_SNP [dm6]	A	T	1.987e^-4	0.66	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8162021	3L_8162021_SNP [dm3] 3L_8168921_SNP [dm6]	C	A	1.990e^-4	0.66	INTERGENIC
2R	19493362	2R_19493362_SNP [dm3] 2R_23605839_SNP [dm6]	C	A	2.000e^-4	0.66	NON_SYNONYMOUS_CODING CG17662 UPSTREAM CG17664 INTRON CG17664
3L	10198522	3L_10198522_INS [dm3] 3L_10205422_INS [dm6]	T	TAAGAGATC	2.000e^-4	0.66	UPSTREAM CR44538 INTERGENIC
2R	6833918	2R_6833918_SNP [dm3] 2R_10946413_SNP [dm6]	A	G	2.001e^-4	0.66	EXON CR45228	TF binding site mE1_TFBS_cad
X	19027731	X_19027731_SNP [dm3] X_19133698_SNP [dm6]	A	T	2.006e^-4	0.66	DOWNSTREAM CR45711 INTERGENIC
X	12201005	X_12201005_DEL [dm3] X_12306972_DEL [dm6]	CCCCTTAGTTTTC...	C	2.011e^-4	0.66	INTRON Ten-a
2L	14657421	2L_14657421_SNP [dm3] 2L_14657421_SNP [dm6]	C	G	2.016e^-4	0.66	INTRON osp	TF binding site mE1_TFBS_inv
X	20931105	X_20931105_SNP [dm3] X_21060078_SNP [dm6]	T	A	2.022e^-4	0.66	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_run
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	2.030e^-4	0.66	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10029472	2R_10029472_DEL [dm3] 2R_14141967_DEL [dm6]	TAC	T	2.037e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_ttk
3L	8162135	3L_8162135_SNP [dm3] 3L_8169035_SNP [dm6]	C	G	2.041e^-4	0.66	INTERGENIC
3R	21460788	3R_21460788_INS [dm3] 3R_25635066_INS [dm6]	A	AC	2.041e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12141776	2L_12141776_SNP [dm3] 2L_12141776_SNP [dm6]	C	A	2.041e^-4	0.66	INTERGENIC
3R	19493931	3R_19493931_SNP [dm3] 3R_23668209_SNP [dm6]	A	G	2.042e^-4	0.66	INTRON CG31145
3R	18330314	3R_18330314_SNP [dm3] 3R_22504592_SNP [dm6]	C	T	2.042e^-4	0.66	INTRON Octbeta1R
2L	7011002	2L_7011002_SNP [dm3] 2L_7011002_SNP [dm6]	C	T	2.048e^-4	0.66	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16543982	2L_16543982_SNP [dm3] 2L_16543982_SNP [dm6]	C	G	2.048e^-4	0.66	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	2.053e^-4	0.66	SYNONYMOUS_CODING CG15570
3R	14465612	3R_14465612_SNP [dm3] 3R_18639890_SNP [dm6]	C	A	2.061e^-4	0.66	INTRON qin & 1 other
2L	8120557	2L_8120557_SNP [dm3] 2L_8120557_SNP [dm6]	T	A	2.079e^-4	0.66	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8844678	3L_8844678_INS [dm3] 3L_8851578_INS [dm6]	G	GG	2.084e^-4	0.66	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	2.087e^-4	0.66	INTRON 5-HT1A
X	8875561	X_8875561_INS [dm3] X_8981528_INS [dm6]	T	TTCATGAGCAGTGGCTAATT...	2.090e^-4	0.66	INTRON rdgA & 1 other
2L	4687537	2L_4687537_SNP [dm3] 2L_4687537_SNP [dm6]	C	G	2.094e^-4	0.66	UTR_5_PRIME Elba3 DOWNSTREAM CG11929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9197960	2L_9197960_SNP [dm3] 2L_9197960_SNP [dm6]	T	A	2.095e^-4	0.66	INTRON tai
2L	13666593	2L_13666593_SNP [dm3] 2L_13666593_SNP [dm6]	T	G	2.098e^-4	0.66	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10198525	3L_10198525_SNP [dm3] 3L_10205425_SNP [dm6]	T	A	2.100e^-4	0.66	UPSTREAM CR44538 INTERGENIC
3L	10198526	3L_10198526_SNP [dm3] 3L_10205426_SNP [dm6]	T	A	2.100e^-4	0.66	UPSTREAM CR44538 INTERGENIC
3L	7011895	3L_7011895_SNP [dm3] 3L_7018795_SNP [dm6]	C	G	2.101e^-4	0.66	INTRON Mp
3L	18312302	3L_18312302_SNP [dm3] 3L_18319202_SNP [dm6]	G	T	2.103e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12602331	2R_12602331_SNP [dm3] 2R_16714826_SNP [dm6]	A	C	2.103e^-4	0.66	INTRON CG30463
2L	12726718	2L_12726718_SNP [dm3] 2L_12726718_SNP [dm6]	G	C	2.105e^-4	0.66	INTRON MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	11285462	X_11285462_SNP [dm3] X_11391429_SNP [dm6]	T	C	2.106e^-4	0.66	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
2R	14261052	2R_14261052_INS [dm3] 2R_18373547_INS [dm6]	A	AA	2.121e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17791288	3R_17791288_SNP [dm3] 3R_21965566_SNP [dm6]	T	G	2.122e^-4	0.66	INTRON Eip93F
3R	1769698	3R_1769698_SNP [dm3] 3R_5943976_SNP [dm6]	C	T	2.124e^-4	0.66	INTRON CG34113
2R	7775676	2R_7775676_SNP [dm3] 2R_11888171_SNP [dm6]	C	T	2.124e^-4	0.66	SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9389049	3L_9389049_SNP [dm3] 3L_9395949_SNP [dm6]	T	A	2.128e^-4	0.66	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	2.136e^-4	0.66	INTERGENIC
3L	15758859	3L_15758859_SNP [dm3] 3L_15765759_SNP [dm6]	A	T	2.143e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18349556	2R_18349556_SNP [dm3] 2R_22462051_SNP [dm6]	C	T	2.144e^-4	0.66	INTRON CG10384
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	2.145e^-4	0.66	INTERGENIC
3R	10131669	3R_10131669_SNP [dm3] 3R_14305947_SNP [dm6]	G	A	2.147e^-4	0.66	INTRON su_Hw_
3R	14597115	3R_14597115_SNP [dm3] 3R_18771393_SNP [dm6]	A	G	2.148e^-4	0.66	INTRON CG7720
2L	9375607	2L_9375607_SNP [dm3] 2L_9375607_SNP [dm6]	C	T	2.152e^-4	0.66	INTRON Shawl
2R	12803851	2R_12803851_SNP [dm3] 2R_16916346_SNP [dm6]	A	T	2.154e^-4	0.66	INTERGENIC
3L	14133975	3L_14133975_SNP [dm3] 3L_14140875_SNP [dm6]	T	C	2.155e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	2182521	3R_2182521_SNP [dm3] 3R_6356799_SNP [dm6]	A	G	2.157e^-4	0.66	SYNONYMOUS_CODING Pak
3R	6342777	3R_6342777_SNP [dm3] 3R_10517055_SNP [dm6]	T	G	2.163e^-4	0.66	INTRON hth
2R	14941685	2R_14941685_SNP [dm3] 2R_19054180_SNP [dm6]	T	G	2.163e^-4	0.66	INTERGENIC
3R	16561478	3R_16561478_SNP [dm3] 3R_20735756_SNP [dm6]	T	A	2.168e^-4	0.66	SYNONYMOUS_CODING cdc2c UPSTREAM mir-995 DOWNSTREAM CR42786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	12619553	2R_12619553_SNP [dm3] 2R_16732048_SNP [dm6]	G	A	2.175e^-4	0.66	UTR_5_PRIME CG30463 UPSTREAM CG30463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	5705723	3R_5705723_SNP [dm3] 3R_9880001_SNP [dm6]	C	T	2.176e^-4	0.66	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	7587130	2R_7587130_SNP [dm3] 2R_11699625_SNP [dm6]	C	A	2.177e^-4	0.66	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8512024	2L_8512024_SNP [dm3] 2L_8512024_SNP [dm6]	T	G	2.177e^-4	0.66	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	3423193	2R_3423193_SNP [dm3] 2R_7535688_SNP [dm6]	G	A	2.179e^-4	0.66	UTR_3_PRIME Cyt-b5 UPSTREAM CG2137
2R	9148836	2R_9148836_SNP [dm3] 2R_13261331_SNP [dm6]	A	T	2.185e^-4	0.66	INTRON CG42319
2L	10725276	2L_10725276_SNP [dm3] 2L_10725276_SNP [dm6]	C	G	2.190e^-4	0.66	UPSTREAM CG6431 INTRON CG6431
X	11071856	X_11071856_SNP [dm3] X_11177823_SNP [dm6]	C	T	2.191e^-4	0.66	INTERGENIC
2R	10619806	2R_10619806_SNP [dm3] 2R_14732301_SNP [dm6]	T	A	2.193e^-4	0.66	INTERGENIC
X	19735674	X_19735674_SNP [dm3] X_19841641_SNP [dm6]	C	G	2.198e^-4	0.66	INTRON pico	TF binding site BDTNP1_TFBS_da
3R	14465583	3R_14465583_SNP [dm3] 3R_18639861_SNP [dm6]	C	G	2.200e^-4	0.66	INTRON qin & 1 other
3L	3920070	3L_3920070_SNP [dm3] 3L_3920070_SNP [dm6]	T	A	2.200e^-4	0.66	INTRON Eip63F-1
3L	9252514	3L_9252514_INS [dm3] 3L_9259414_INS [dm6]	C	CT	2.201e^-4	0.66	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5028269	X_5028269_SNP [dm3] X_5134236_SNP [dm6]	A	T	2.221e^-4	0.66	INTRON rg & 1 other
3R	14465649	3R_14465649_SNP [dm3] 3R_18639927_SNP [dm6]	T	C	2.223e^-4	0.66	INTRON qin & 1 other
2L	13253659	2L_13253659_SNP [dm3] 2L_13253659_SNP [dm6]	T	C	2.225e^-4	0.66	INTRON CG31728
2R	16693693	2R_16693693_DEL [dm3] 2R_20806188_DEL [dm6]	TAA	T	2.225e^-4	0.66	INTERGENIC
2L	5199375	2L_5199375_SNP [dm3] 2L_5199375_SNP [dm6]	A	G	2.228e^-4	0.66	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
2L	4687445	2L_4687445_SNP [dm3] 2L_4687445_SNP [dm6]	A	G	2.235e^-4	0.66	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4687506	2L_4687506_SNP [dm3] 2L_4687506_SNP [dm6]	G	A	2.235e^-4	0.66	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14141293	3L_14141293_SNP [dm3] 3L_14148193_SNP [dm6]	G	T	2.246e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1101647	2L_1101647_SNP [dm3] 2L_1101647_SNP [dm6]	T	A	2.247e^-4	0.66	INTRON CG4629
3L	18620332	3L_18620332_SNP [dm3] 3L_18627232_SNP [dm6]	G	T	2.249e^-4	0.66	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16250789	3R_16250789_SNP [dm3] 3R_20425067_SNP [dm6]	C	T	2.251e^-4	0.66	INTRON Gfrl
2L	12694795	2L_12694795_SNP [dm3] 2L_12694795_SNP [dm6]	C	T	2.253e^-4	0.66	SYNONYMOUS_CODING CG5780 UPSTREAM PICK1 DOWNSTREAM CG6153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	2.255e^-4	0.66	INTERGENIC
2R	8928584	2R_8928584_SNP [dm3] 2R_13041079_SNP [dm6]	T	A	2.257e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5155271	2L_5155271_SNP [dm3] 2L_5155271_SNP [dm6]	T	A	2.259e^-4	0.66	INTRON Msp300	TF binding site mE1_TFBS_cad
2R	14509237	2R_14509237_SNP [dm3] 2R_18621732_SNP [dm6]	C	T	2.261e^-4	0.66	UTR_5_PRIME CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
3L	6065530	3L_6065530_SNP [dm3] 3L_6072430_SNP [dm6]	T	G	2.263e^-4	0.66	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8710183	3R_8710183_SNP [dm3] 3R_12884461_SNP [dm6]	A	C	2.268e^-4	0.66	INTERGENIC
3L	13383103	3L_13383103_SNP [dm3] 3L_13390003_SNP [dm6]	T	C	2.269e^-4	0.66	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6801518	3L_6801518_SNP [dm3] 3L_6808418_SNP [dm6]	G	A	2.273e^-4	0.66	INTERGENIC
2L	1510352	2L_1510352_SNP [dm3] 2L_1510352_SNP [dm6]	G	T	2.274e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16363130	2R_16363130_SNP [dm3] 2R_20475625_SNP [dm6]	G	T	2.274e^-4	0.66	INTRON CG12484
3L	6065517	3L_6065517_SNP [dm3] 3L_6072417_SNP [dm6]	C	A	2.277e^-4	0.66	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_sens
3L	6065543	3L_6065543_SNP [dm3] 3L_6072443_SNP [dm6]	G	T	2.277e^-4	0.66	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4749118	X_4749118_SNP [dm3] X_4855085_SNP [dm6]	C	A	2.283e^-4	0.661	INTRON CG42594
2L	1510073	2L_1510073_SNP [dm3] 2L_1510073_SNP [dm6]	C	G	2.288e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10198567	3L_10198567_SNP [dm3] 3L_10205467_SNP [dm6]	C	T	2.293e^-4	0.662	UPSTREAM CR44538 INTERGENIC
3L	12937675	3L_12937675_SNP [dm3] 3L_12944575_SNP [dm6]	C	G	2.307e^-4	0.662	INTERGENIC
3R	12706351	3R_12706351_SNP [dm3] 3R_16880629_SNP [dm6]	A	G	2.309e^-4	0.662	INTRON iab-8
2R	4897015	2R_4897015_SNP [dm3] 2R_9009510_SNP [dm6]	G	A	2.310e^-4	0.662	UPSTREAM CG8172 INTRON CG8172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10157048	3R_10157048_SNP [dm3] 3R_14331326_SNP [dm6]	A	T	2.311e^-4	0.662	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15523634	3L_15523634_SNP [dm3] 3L_15530534_SNP [dm6]	A	G	2.313e^-4	0.662	INTRON CG43248	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15071793	2R_15071793_SNP [dm3] 2R_19184288_SNP [dm6]	A	T	2.315e^-4	0.662	INTRON hppy
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	2.321e^-4	0.662	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2R	5853973	2R_5853973_SNP [dm3] 2R_9966468_SNP [dm6]	A	T	2.322e^-4	0.662	UPSTREAM CG12133 INTERGENIC
3R	10378520	3R_10378520_SNP [dm3] 3R_14552798_SNP [dm6]	T	C	2.329e^-4	0.662	INTRON Pde6
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	2.329e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16607913	2R_16607913_SNP [dm3] 2R_20720408_SNP [dm6]	C	A	2.338e^-4	0.663	INTRON dpr
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	2.346e^-4	0.664	INTRON qin & 1 other
2L	2893646	2L_2893646_SNP [dm3] 2L_2893646_SNP [dm6]	T	A	2.347e^-4	0.664	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4687470	2L_4687470_SNP [dm3] 2L_4687470_SNP [dm6]	A	T	2.361e^-4	0.665	UPSTREAM Elba3 DOWNSTREAM CG11929 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10378844	3R_10378844_SNP [dm3] 3R_14553122_SNP [dm6]	C	A	2.362e^-4	0.665	INTRON Pde6
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	2.362e^-4	0.665	INTRON Dh31
X	18408142	X_18408142_SNP [dm3] X_18514109_SNP [dm6]	G	T	2.367e^-4	0.666	INTRON CG6470
2L	8517405	2L_8517405_SNP [dm3] 2L_8517405_SNP [dm6]	G	T	2.376e^-4	0.666	UPSTREAM CG13090 & 1 other DOWNSTREAM PIG-U INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10198439	3L_10198439_SNP [dm3] 3L_10205339_SNP [dm6]	G	A	2.380e^-4	0.666	UPSTREAM CR44538 INTERGENIC
2L	1101655	2L_1101655_SNP [dm3] 2L_1101655_SNP [dm6]	T	C	2.382e^-4	0.666	INTRON CG4629
3L	2412715	3L_2412715_SNP [dm3] 3L_2412715_SNP [dm6]	C	T	2.383e^-4	0.666	INTRON CG45186
X	18408154	X_18408154_SNP [dm3] X_18514121_SNP [dm6]	C	T	2.387e^-4	0.666	INTRON CG6470
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	2.388e^-4	0.666	INTRON CG34355
2L	1990286	2L_1990286_SNP [dm3] 2L_1990286_SNP [dm6]	A	C	2.394e^-4	0.666	EXON CR42874
3R	23266450	3R_23266450_SNP [dm3] 3R_27440728_SNP [dm6]	G	C	2.396e^-4	0.666	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13809498	2L_13809498_SNP [dm3] 2L_13809498_SNP [dm6]	A	G	2.418e^-4	0.667	SYNONYMOUS_CODING CAH1 UTR_3_PRIME adat DOWNSTREAM adat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	2.421e^-4	0.667	INTRON CG30463
3L	18304828	3L_18304828_SNP [dm3] 3L_18311728_SNP [dm6]	A	G	2.425e^-4	0.667	INTERGENIC
3R	15467503	3R_15467503_SNP [dm3] 3R_19641781_SNP [dm6]	A	G	2.425e^-4	0.667	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17857944	2R_17857944_SNP [dm3] 2R_21970439_SNP [dm6]	C	G	2.428e^-4	0.667	DOWNSTREAM CG34029 INTRON ppk9
3L	16330800	3L_16330800_INS [dm3] 3L_16337700_INS [dm6]	T	TAATAATAATAATAATAATA...	2.432e^-4	0.667	INTERGENIC
3R	25797785	3R_25797785_SNP [dm3] 3R_29972063_SNP [dm6]	A	G	2.433e^-4	0.667	INTERGENIC
3L	9411300	3L_9411300_SNP [dm3] 3L_9418200_SNP [dm6]	A	T	2.434e^-4	0.667	UPSTREAM CG3982 INTRON CG3967
3L	15943861	3L_15943861_SNP [dm3] 3L_15950761_SNP [dm6]	T	C	2.438e^-4	0.667	INTRON Pka-C3
3L	16229346	3L_16229346_SNP [dm3] 3L_16236246_SNP [dm6]	C	A	2.441e^-4	0.667	UTR_3_PRIME l_3_72Dp
3R	11284903	3R_11284903_DEL [dm3] 3R_15459181_DEL [dm6]	ATA	A	2.448e^-4	0.667	INTRON AdamTS-A
3L	6821419	3L_6821419_SNP [dm3] 3L_6828319_SNP [dm6]	G	T	2.448e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	2.453e^-4	0.667	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8529982	2L_8529982_SNP [dm3] 2L_8529982_SNP [dm6]	A	T	2.454e^-4	0.667	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7655424	3L_7655424_SNP [dm3] 3L_7662324_SNP [dm6]	G	A	2.457e^-4	0.667	INTRON CG32373 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19098002	3L_19098002_SNP [dm3] 3L_19104902_SNP [dm6]	A	T	2.463e^-4	0.667	DOWNSTREAM CG14082 INTERGENIC
2R	10029875	2R_10029875_SNP [dm3] 2R_14142370_SNP [dm6]	T	A	2.483e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3R	14794570	3R_14794570_SNP [dm3] 3R_18968848_SNP [dm6]	A	G	2.485e^-4	0.667	INTRON CG42613 & 1 other
X	5164281	X_5164281_SNP [dm3] X_5270248_SNP [dm6]	A	G	2.490e^-4	0.667	INTERGENIC
2R	12804694	2R_12804694_SNP [dm3] 2R_16917189_SNP [dm6]	T	C	2.491e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	8674617	2L_8674617_SNP [dm3] 2L_8674617_SNP [dm6]	G	A	2.500e^-4	0.667	INTRON Glt
3R	15466053	3R_15466053_SNP [dm3] 3R_19640331_SNP [dm6]	G	T	2.500e^-4	0.667	INTRON subdued
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	2.501e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16337918	3L_16337918_SNP [dm3] 3L_16344818_SNP [dm6]	C	T	2.504e^-4	0.667	UTR_3_PRIME CG4998	TF binding site mE1_TFBS_cad
X	20390345	X_20390345_SNP [dm3] X_20519318_SNP [dm6]	C	T	2.509e^-4	0.667	INTRON Tak1
2L	3080881	2L_3080881_SNP [dm3] 2L_3080881_SNP [dm6]	C	T	2.510e^-4	0.667	NON_SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18015363	2R_18015363_SNP [dm3] 2R_22127858_SNP [dm6]	T	A	2.513e^-4	0.667	NON_SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	24477979	3R_24477979_SNP [dm3] 3R_28652257_SNP [dm6]	G	T	2.515e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17840888	3R_17840888_SNP [dm3] 3R_22015166_SNP [dm6]	G	T	2.522e^-4	0.667	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	10856569	X_10856569_SNP [dm3] X_10962536_SNP [dm6]	T	G	2.525e^-4	0.667	SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8512102	2L_8512102_SNP [dm3] 2L_8512102_SNP [dm6]	T	C	2.530e^-4	0.667	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	15466336	3R_15466336_SNP [dm3] 3R_19640614_SNP [dm6]	A	C	2.531e^-4	0.667	INTRON subdued	TF binding site mE1_TFBS_Trl
3R	13205380	3R_13205380_SNP [dm3] 3R_17379658_SNP [dm6]	C	A	2.533e^-4	0.667	UPSTREAM lute INTRON Brf
3L	10376274	3L_10376274_SNP [dm3] 3L_10383174_SNP [dm6]	G	A	2.534e^-4	0.667	INTERGENIC
2L	4739680	2L_4739680_DEL [dm3] 2L_4739680_DEL [dm6]	TGCAGCTTGGCCACTCT...	T	2.534e^-4	0.667	INTRON CG15630
X	13977497	X_13977497_SNP [dm3] X_14083464_SNP [dm6]	T	A	2.539e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8455423	2R_8455423_SNP [dm3] 2R_12567918_SNP [dm6]	T	G	2.542e^-4	0.667	SYNONYMOUS_CODING Cyp301a1
2L	5560553	2L_5560553_SNP [dm3] 2L_5560553_SNP [dm6]	A	G	2.543e^-4	0.667	INTRON GluRIIB
2L	1284575	2L_1284575_SNP [dm3] 2L_1284575_SNP [dm6]	A	T	2.544e^-4	0.667	INTRON robo3
3L	19099313	3L_19099313_SNP [dm3] 3L_19106213_SNP [dm6]	C	T	2.544e^-4	0.667	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
2L	14657416	2L_14657416_SNP [dm3] 2L_14657416_SNP [dm6]	T	A	2.552e^-4	0.668	INTRON osp	TF binding site mE1_TFBS_inv
3R	18418450	3R_18418450_SNP [dm3] 3R_22592728_SNP [dm6]	G	A	2.566e^-4	0.67	INTRON Efa6
2R	9148839	2R_9148839_SNP [dm3] 2R_13261334_SNP [dm6]	T	C	2.569e^-4	0.67	INTRON CG42319
2L	5860297	2L_5860297_SNP [dm3] 2L_5860297_SNP [dm6]	A	C	2.570e^-4	0.67	SYNONYMOUS_CODING rau	TF binding site mE1_TFBS_cad
3L	22331231	3L_22331231_SNP [dm3] 3L_22338131_SNP [dm6]	G	T	2.586e^-4	0.672	INTRON Ten-m
X	12009084	X_12009084_SNP [dm3] X_12115051_SNP [dm6]	T	C	2.593e^-4	0.672	INTRON CR43960 & 1 other
2R	11136113	2R_11136113_SNP [dm3] 2R_15248608_SNP [dm6]	A	T	2.594e^-4	0.672	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	16677908	2L_16677908_SNP [dm3] 2L_16677908_SNP [dm6]	A	G	2.598e^-4	0.672	NON_SYNONYMOUS_CODING her UPSTREAM mir-2497	TF binding site mE1_TFBS_sens
2L	14657383	2L_14657383_SNP [dm3] 2L_14657383_SNP [dm6]	A	G	2.599e^-4	0.672	INTRON osp	TF binding site mE1_TFBS_inv
2L	10063676	2L_10063676_SNP [dm3] 2L_10063676_SNP [dm6]	C	G	2.599e^-4	0.672	DOWNSTREAM CG44153 INTRON Spn31A
3R	10387672	3R_10387672_SNP [dm3] 3R_14561950_SNP [dm6]	A	T	2.606e^-4	0.673	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
2R	13820503	2R_13820503_SNP [dm3] 2R_17932998_SNP [dm6]	C	A	2.608e^-4	0.673	INTERGENIC
2L	6278651	2L_6278651_INS [dm3] 2L_6278651_INS [dm6]	T	TTCT	2.616e^-4	0.674	INTRON Ddr
3R	25304772	3R_25304772_SNP [dm3] 3R_29479050_SNP [dm6]	T	A	2.625e^-4	0.675	UPSTREAM Ptp99A INTRON Ptp99A
3L	19797811	3L_19797811_SNP [dm3] 3L_19804711_SNP [dm6]	A	T	2.635e^-4	0.675	NON_SYNONYMOUS_CODING CG14103 UPSTREAM CG15881 DOWNSTREAM CG34116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15466067	3R_15466067_SNP [dm3] 3R_19640345_SNP [dm6]	A	C	2.635e^-4	0.675	INTRON subdued
3R	15955905	3R_15955905_SNP [dm3] 3R_20130183_SNP [dm6]	T	C	2.636e^-4	0.675	INTERGENIC
2L	6971741	2L_6971741_SNP [dm3] 2L_6971741_SNP [dm6]	T	A	2.650e^-4	0.675	UPSTREAM CR43142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
3L	12836892	3L_12836892_SNP [dm3] 3L_12843792_SNP [dm6]	A	G	2.651e^-4	0.675	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	1975361	2L_1975361_SNP [dm3] 2L_1975361_SNP [dm6]	T	A	2.655e^-4	0.675	UTR_3_PRIME Der-1 DOWNSTREAM CG15356
3R	25909561	3R_25909561_SNP [dm3] 3R_30083839_SNP [dm6]	C	A	2.661e^-4	0.675	INTRON sima	TF binding site mE1_TFBS_Trl
2L	16544377	2L_16544377_DEL [dm3] 2L_16544377_DEL [dm6]	ATGATAGAGTAATCA...	A	2.667e^-4	0.675	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	8442734	3L_8442734_SNP [dm3] 3L_8449634_SNP [dm6]	A	G	2.668e^-4	0.675	UPSTREAM Gug & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2R	16931578	2R_16931578_SNP [dm3] 2R_21044073_SNP [dm6]	G	A	2.674e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15658330	2R_15658330_SNP [dm3] 2R_19770825_SNP [dm6]	A	T	2.674e^-4	0.675	INTRON Or56a
2L	7263751	2L_7263751_SNP [dm3] 2L_7263751_SNP [dm6]	C	T	2.674e^-4	0.675	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14286756	3L_14286756_SNP [dm3] 3L_14293656_SNP [dm6]	T	G	2.677e^-4	0.675	INTRON fz
3R	25531107	3R_25531107_SNP [dm3] 3R_29705385_SNP [dm6]	T	C	2.679e^-4	0.675	INTERGENIC
3R	20563710	3R_20563710_SNP [dm3] 3R_24737988_SNP [dm6]	T	C	2.680e^-4	0.675	INTRON tok
2L	1702876	2L_1702876_SNP [dm3] 2L_1702876_SNP [dm6]	C	T	2.685e^-4	0.675	UTR_3_PRIME chinmo
2L	8512136	2L_8512136_INS [dm3] 2L_8512136_INS [dm6]	A	AAAACATTAACATATTAACT...	2.689e^-4	0.675	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	24382598	3R_24382598_SNP [dm3] 3R_28556876_SNP [dm6]	A	T	2.690e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	15695863	3L_15695863_SNP [dm3] 3L_15702763_SNP [dm6]	G	A	2.715e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2292874	3L_2292874_SNP [dm3] 3L_2292874_SNP [dm6]	A	G	2.720e^-4	0.68	INTRON MsR2
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	2.721e^-4	0.68	DOWNSTREAM Ir60a INTRON nord
2R	5625134	2R_5625134_DEL [dm3] 2R_9737629_DEL [dm6]	CAGCAGCA	C	2.730e^-4	0.682	INTRON sqa
2L	3507511	2L_3507511_SNP [dm3] 2L_3507511_SNP [dm6]	G	T	2.737e^-4	0.682	START_GAINED tim UTR_5_PRIME tim UPSTREAM tim INTRON tim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19468685	2R_19468685_SNP [dm3] 2R_23581162_SNP [dm6]	A	T	2.740e^-4	0.682	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10378434	3L_10378434_SNP [dm3] 3L_10385334_SNP [dm6]	G	A	2.749e^-4	0.683	INTERGENIC
3R	14458024	3R_14458024_SNP [dm3] 3R_18632302_SNP [dm6]	C	A	2.750e^-4	0.683	INTRON qin & 1 other
3L	10198528	3L_10198528_SNP [dm3] 3L_10205428_SNP [dm6]	A	G	2.759e^-4	0.683	UPSTREAM CR44538 INTERGENIC
3L	10198530	3L_10198530_SNP [dm3] 3L_10205430_SNP [dm6]	C	T	2.759e^-4	0.683	UPSTREAM CR44538 INTERGENIC
3L	10198535	3L_10198535_SNP [dm3] 3L_10205435_SNP [dm6]	C	G	2.759e^-4	0.683	UPSTREAM CR44538 INTERGENIC
X	4749119	X_4749119_SNP [dm3] X_4855086_SNP [dm6]	G	A	2.774e^-4	0.684	INTRON CG42594
X	8569486	X_8569486_SNP [dm3] X_8675453_SNP [dm6]	C	G	2.777e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19417259	3L_19417259_SNP [dm3] 3L_19424159_SNP [dm6]	A	G	2.778e^-4	0.684	UPSTREAM CR42838 DOWNSTREAM CG33255 EXON CR32205
3R	25909563	3R_25909563_SNP [dm3] 3R_30083841_SNP [dm6]	C	A	2.784e^-4	0.684	INTRON sima	TF binding site mE1_TFBS_Trl
2R	15658349	2R_15658349_SNP [dm3] 2R_19770844_SNP [dm6]	C	A	2.786e^-4	0.684	INTRON Or56a
2L	2039910	2L_2039910_SNP [dm3] 2L_2039910_SNP [dm6]	G	A	2.788e^-4	0.684	INTRON Su_dx_
2R	5872157	2R_5872157_SNP [dm3] 2R_9984652_SNP [dm6]	A	T	2.802e^-4	0.684	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1554190	2L_1554190_SNP [dm3] 2L_1554190_SNP [dm6]	A	G	2.806e^-4	0.684	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11444093	2R_11444093_SNP [dm3] 2R_15556588_SNP [dm6]	G	T	2.807e^-4	0.684	UTR_5_PRIME CG12963 UPSTREAM CG12963 INTRON CG12963
2R	19840021	2R_19840021_SNP [dm3] 2R_23952498_SNP [dm6]	G	A	2.815e^-4	0.684	DOWNSTREAM CG3803 & 2 others INTERGENIC
2L	8582659	2L_8582659_SNP [dm3] 2L_8582659_SNP [dm6]	C	T	2.820e^-4	0.684	INTRON Sema-1a
2L	3093573	2L_3093573_SNP [dm3] 2L_3093573_SNP [dm6]	T	C	2.821e^-4	0.684	INTRON toc
3R	2217085	3R_2217085_SNP [dm3] 3R_6391363_SNP [dm6]	C	T	2.824e^-4	0.684	SYNONYMOUS_CODING Dmtn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5605349	2R_5605349_SNP [dm3] 2R_9717844_SNP [dm6]	C	T	2.827e^-4	0.684	NON_SYNONYMOUS_CODING sqa DOWNSTREAM sqa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	14218931	2R_14218931_SNP [dm3] 2R_18331426_SNP [dm6]	G	A	2.829e^-4	0.684	INTRON sbb
3R	19066621	3R_19066621_SNP [dm3] 3R_23240899_SNP [dm6]	A	T	2.838e^-4	0.684	UPSTREAM CG4467 INTRON CG4467
X	14973802	X_14973802_DEL [dm3] X_15079769_DEL [dm6]	TAGTTGT	T	2.840e^-4	0.684	UPSTREAM CR44661 EXON CR44662
2L	2822612	2L_2822612_SNP [dm3] 2L_2822612_SNP [dm6]	C	A	2.841e^-4	0.684	DOWNSTREAM CG3123 INTRON Duox
X	12009087	X_12009087_SNP [dm3] X_12115054_SNP [dm6]	T	G	2.844e^-4	0.684	INTRON CR43960 & 1 other
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	2.845e^-4	0.684	INTERGENIC
3R	14421573	3R_14421573_SNP [dm3] 3R_18595851_SNP [dm6]	C	T	2.856e^-4	0.684	INTRON qin & 1 other
3L	17935461	3L_17935461_SNP [dm3] 3L_17942361_SNP [dm6]	T	C	2.869e^-4	0.684	INTRON CG43174
3L	8161655	3L_8161655_SNP [dm3] 3L_8168555_SNP [dm6]	A	G	2.870e^-4	0.684	INTERGENIC
3L	10388044	3L_10388044_SNP [dm3] 3L_10394944_SNP [dm6]	C	G	2.871e^-4	0.684	INTERGENIC
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	2.872e^-4	0.684	INTERGENIC
3L	849231	3L_849231_SNP [dm3] 3L_849231_SNP [dm6]	C	T	2.872e^-4	0.684	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12009076	X_12009076_SNP [dm3] X_12115043_SNP [dm6]	A	C	2.876e^-4	0.684	INTRON CR43960 & 1 other
2R	5605694	2R_5605694_SNP [dm3] 2R_9718189_SNP [dm6]	A	G	2.885e^-4	0.684	DOWNSTREAM sqa INTRON sqa	TF binding site BDTNP1_TFBS_twi
2L	9374285	2L_9374285_DEL [dm3] 2L_9374285_DEL [dm6]	GTTAG	G	2.890e^-4	0.684	DOWNSTREAM CR43865 INTRON Shawl
2L	14096416	2L_14096416_SNP [dm3] 2L_14096416_SNP [dm6]	A	T	2.894e^-4	0.684	INTERGENIC
3R	16337607	3R_16337607_SNP [dm3] 3R_20511885_SNP [dm6]	C	T	2.897e^-4	0.684	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16375341	3R_16375341_SNP [dm3] 3R_20549619_SNP [dm6]	T	C	2.905e^-4	0.684	INTRON Stat92E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11993037	3R_11993037_INS [dm3] 3R_16167315_INS [dm6]	A	AAACA	2.912e^-4	0.684	INTRON CG6006
2L	1481914	2L_1481914_SNP [dm3] 2L_1481914_SNP [dm6]	C	T	2.915e^-4	0.684	INTERGENIC
2R	18184082	2R_18184082_SNP [dm3] 2R_22296577_SNP [dm6]	G	A	2.916e^-4	0.684	NON_SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20931096	X_20931096_SNP [dm3] X_21060069_SNP [dm6]	T	A	2.918e^-4	0.684	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_run
3L	10754882	3L_10754882_SNP [dm3] 3L_10761782_SNP [dm6]	C	T	2.919e^-4	0.684	INTERGENIC
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	2.920e^-4	0.684	INTERGENIC
3L	8454055	3L_8454055_SNP [dm3] 3L_8460955_SNP [dm6]	C	T	2.922e^-4	0.684	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3098283	3L_3098283_SNP [dm3] 3L_3098283_SNP [dm6]	A	G	2.926e^-4	0.684	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3R	15466119	3R_15466119_SNP [dm3] 3R_19640397_SNP [dm6]	C	T	2.932e^-4	0.684	INTRON subdued
2R	5706393	2R_5706393_SNP [dm3] 2R_9818888_SNP [dm6]	C	A	2.935e^-4	0.684	DOWNSTREAM lectin-46Ca INTRON CG1648
2R	5007060	2R_5007060_SNP [dm3] 2R_9119555_SNP [dm6]	G	A	2.938e^-4	0.684	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	2.940e^-4	0.684	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	2.940e^-4	0.684	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3L	14447335	3L_14447335_SNP [dm3] 3L_14454235_SNP [dm6]	G	T	2.946e^-4	0.684	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1453105	2L_1453105_SNP [dm3] 2L_1453105_SNP [dm6]	G	A	2.946e^-4	0.684	INTERGENIC
2R	16841707	2R_16841707_INS [dm3] 2R_20954202_INS [dm6]	T	TAT	2.948e^-4	0.684	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3505683	2L_3505683_SNP [dm3] 2L_3505683_SNP [dm6]	T	A	2.950e^-4	0.684	INTRON tim	TF binding site BDTNP1_TFBS_twi
3L	2171033	3L_2171033_MNP [dm3] 3L_2171033_MNP [dm6]	TAATT	ATTGA	2.950e^-4	0.684	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
X	19735457	X_19735457_SNP [dm3] X_19841424_SNP [dm6]	G	T	2.952e^-4	0.684	INTRON pico	TF binding site BDTNP1_TFBS_da
3L	16349941	3L_16349941_SNP [dm3] 3L_16356841_SNP [dm6]	A	G	2.959e^-4	0.685	UPSTREAM CG45057 INTRON CG45057
3L	16334506	3L_16334506_SNP [dm3] 3L_16341406_SNP [dm6]	C	A	2.962e^-4	0.685	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11554952	X_11554952_DEL [dm3] X_11660919_DEL [dm6]	CTTTATTATGTGTATTTCGA...	C	2.970e^-4	0.686	INTRON Ptp10D
3R	1737571	3R_1737571_SNP [dm3] 3R_5911849_SNP [dm6]	C	T	2.980e^-4	0.686	INTRON CG34113
3L	9411248	3L_9411248_SNP [dm3] 3L_9418148_SNP [dm6]	T	C	2.980e^-4	0.686	UPSTREAM CG3982 INTRON CG3967
2L	3080804	2L_3080804_SNP [dm3] 2L_3080804_SNP [dm6]	G	T	2.982e^-4	0.686	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2207719	2L_2207719_DEL [dm3] 2L_2207719_DEL [dm6]	TGCACCATAGTCTGGTGCAC...	T	2.983e^-4	0.686	FRAME_SHIFT CG33124
2L	1702878	2L_1702878_SNP [dm3] 2L_1702878_SNP [dm6]	T	A	2.987e^-4	0.686	UTR_3_PRIME chinmo
2L	5204195	2L_5204195_SNP [dm3] 2L_5204195_SNP [dm6]	G	A	2.994e^-4	0.686	INTRON Msp300
2L	2047168	2L_2047168_SNP [dm3] 2L_2047168_SNP [dm6]	T	A	2.998e^-4	0.686	NON_SYNONYMOUS_CODING Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11641997	2R_11641997_SNP [dm3] 2R_15754492_SNP [dm6]	G	A	3.001e^-4	0.686	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22199827	3R_22199827_SNP [dm3] 3R_26374105_SNP [dm6]	A	T	3.002e^-4	0.686	INTERGENIC
3L	10948604	3L_10948604_SNP [dm3] 3L_10955504_SNP [dm6]	C	T	3.010e^-4	0.687	INTERGENIC
3R	15468411	3R_15468411_SNP [dm3] 3R_19642689_SNP [dm6]	C	A	3.013e^-4	0.687	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3418748	2R_3418748_SNP [dm3] 2R_7531243_SNP [dm6]	T	C	3.017e^-4	0.687	UPSTREAM Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8514725	2L_8514725_SNP [dm3] 2L_8514725_SNP [dm6]	C	T	3.024e^-4	0.687	SYNONYMOUS_CODING CG13097 UPSTREAM PIG-U	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	16901372	X_16901372_INS [dm3] X_17007339_INS [dm6]	T	TT	3.028e^-4	0.688	INTRON CG45002
3L	19412254	3L_19412254_SNP [dm3] 3L_19419154_SNP [dm6]	A	T	3.036e^-4	0.688	INTERGENIC
X	18356000	X_18356000_SNP [dm3] X_18461967_SNP [dm6]	G	A	3.037e^-4	0.688	INTRON CG32547 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6653933	3R_6653933_SNP [dm3] 3R_10828211_SNP [dm6]	T	A	3.042e^-4	0.688	INTRON Cad86C
3R	14465636	3R_14465636_SNP [dm3] 3R_18639914_SNP [dm6]	C	T	3.043e^-4	0.688	INTRON qin & 1 other
2L	5003204	2L_5003204_SNP [dm3] 2L_5003204_SNP [dm6]	A	G	3.047e^-4	0.688	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	5818606	X_5818606_SNP [dm3] X_5924573_SNP [dm6]	T	A	3.054e^-4	0.688	INTRON CG3726
2R	15658364	2R_15658364_SNP [dm3] 2R_19770859_SNP [dm6]	A	T	3.061e^-4	0.688	INTRON Or56a
3R	16498899	3R_16498899_SNP [dm3] 3R_20673177_SNP [dm6]	T	C	3.067e^-4	0.688	DOWNSTREAM Cpr92F INTERGENIC
3R	16524088	3R_16524088_SNP [dm3] 3R_20698366_SNP [dm6]	T	C	3.067e^-4	0.688	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad
2L	13029683	2L_13029683_SNP [dm3] 2L_13029683_SNP [dm6]	A	G	3.070e^-4	0.688	INTRON CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	3.071e^-4	0.688	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11081590	2R_11081590_SNP [dm3] 2R_15194085_SNP [dm6]	A	C	3.073e^-4	0.688	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
2R	19131309	2R_19131309_SNP [dm3] 2R_23243786_SNP [dm6]	C	A	3.094e^-4	0.69	DOWNSTREAM yip3 INTERGENIC
3L	20721010	3L_20721010_SNP [dm3] 3L_20727910_SNP [dm6]	C	G	3.097e^-4	0.69	INTERGENIC
2L	1975334	2L_1975334_SNP [dm3] 2L_1975334_SNP [dm6]	T	A	3.102e^-4	0.69	UTR_3_PRIME Der-1 DOWNSTREAM CG15356
3L	321414	3L_321414_SNP [dm3] 3L_321414_SNP [dm6]	T	G	3.113e^-4	0.69	INTRON CG32344	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2094111	2L_2094111_SNP [dm3] 2L_2094111_SNP [dm6]	A	C	3.121e^-4	0.69	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
2L	3093626	2L_3093626_SNP [dm3] 2L_3093626_SNP [dm6]	G	T	3.122e^-4	0.69	INTRON toc
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	3.126e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16341011	3L_16341011_SNP [dm3] 3L_16347911_SNP [dm6]	T	C	3.128e^-4	0.69	UPSTREAM mRpS34 DOWNSTREAM CG33257 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16521875	3R_16521875_SNP [dm3] 3R_20696153_SNP [dm6]	T	A	3.128e^-4	0.69	INTRON Oamb
2R	15784021	2R_15784021_SNP [dm3] 2R_19896516_SNP [dm6]	G	T	3.138e^-4	0.69	DOWNSTREAM CR44572 INTERGENIC
2L	8028076	2L_8028076_SNP [dm3] 2L_8028076_SNP [dm6]	C	A	3.148e^-4	0.69	SYNONYMOUS_CODING CG7367
3R	19972243	3R_19972243_SNP [dm3] 3R_24146521_SNP [dm6]	T	C	3.150e^-4	0.69	SYNONYMOUS_CODING Kal1 DOWNSTREAM Slimp
3R	16534400	3R_16534400_SNP [dm3] 3R_20708678_SNP [dm6]	G	A	3.151e^-4	0.69	INTRON Oamb
3L	10445864	3L_10445864_SNP [dm3] 3L_10452764_SNP [dm6]	A	C	3.152e^-4	0.69	INTERGENIC
X	5845338	X_5845338_SNP [dm3] X_5951305_SNP [dm6]	A	C	3.162e^-4	0.69	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1453513	3L_1453513_DEL [dm3] 3L_1453513_DEL [dm6]	GACCA	G	3.168e^-4	0.69	INTRON Ptp61F
3R	22696118	3R_22696118_SNP [dm3] 3R_26870396_SNP [dm6]	T	C	3.180e^-4	0.69	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15693163	3L_15693163_SNP [dm3] 3L_15700063_SNP [dm6]	C	G	3.188e^-4	0.69	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9389014	3L_9389014_SNP [dm3] 3L_9395914_SNP [dm6]	A	G	3.188e^-4	0.69	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5206214	2L_5206214_SNP [dm3] 2L_5206214_SNP [dm6]	T	C	3.190e^-4	0.69	UTR_3_PRIME Msp300 DOWNSTREAM Msp300 EXON snmRNA:158
3R	15468499	3R_15468499_SNP [dm3] 3R_19642777_SNP [dm6]	G	C	3.193e^-4	0.69	UPSTREAM subdued DOWNSTREAM Vha13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	17164735	X_17164735_SNP [dm3] X_17270702_SNP [dm6]	A	T	3.194e^-4	0.69	INTRON f
2L	2223313	2L_2223313_DEL [dm3] 2L_2223313_DEL [dm6]	CAAC	C	3.199e^-4	0.69	UTR_5_PRIME papi
3L	16298742	3L_16298742_SNP [dm3] 3L_16305642_SNP [dm6]	G	C	3.199e^-4	0.69	SYNONYMOUS_CODING CG13043 UPSTREAM CG13063 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10198531	3L_10198531_SNP [dm3] 3L_10205431_SNP [dm6]	A	C	3.199e^-4	0.69	UPSTREAM CR44538 INTERGENIC
3L	3536581	3L_3536581_SNP [dm3] 3L_3536581_SNP [dm6]	C	A	3.200e^-4	0.69	INTRON Eip63E
2L	1579052	2L_1579052_SNP [dm3] 2L_1579052_SNP [dm6]	G	T	3.208e^-4	0.69	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	3.209e^-4	0.69	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	12721530	2L_12721530_SNP [dm3] 2L_12721530_SNP [dm6]	A	G	3.210e^-4	0.69	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	12554597	2L_12554597_SNP [dm3] 2L_12554597_SNP [dm6]	C	G	3.211e^-4	0.69	INTERGENIC
3R	8181448	3R_8181448_SNP [dm3] 3R_12355726_SNP [dm6]	A	T	3.226e^-4	0.69	NON_SYNONYMOUS_CODING MBD-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6217635	2R_6217635_SNP [dm3] 2R_10330130_SNP [dm6]	G	A	3.229e^-4	0.69	INTRON CG42732	TF binding site mE1_TFBS_cad
2L	1014238	2L_1014238_SNP [dm3] 2L_1014238_SNP [dm6]	G	A	3.239e^-4	0.69	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13333230	2R_13333230_SNP [dm3] 2R_17445725_SNP [dm6]	A	G	3.248e^-4	0.69	UPSTREAM EDTP INTRON mthl4
3L	11859378	3L_11859378_SNP [dm3] 3L_11866278_SNP [dm6]	A	G	3.249e^-4	0.69	INTRON CG44837
2R	19466072	2R_19466072_SNP [dm3] 2R_23578549_SNP [dm6]	T	C	3.251e^-4	0.69	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8161999	3L_8161999_SNP [dm3] 3L_8168899_SNP [dm6]	G	C	3.251e^-4	0.69	INTERGENIC
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	3.253e^-4	0.69	INTERGENIC
2L	3298728	2L_3298728_INS [dm3] 2L_3298728_INS [dm6]	T	TCAGGAAATTAACCTATCCA...	3.253e^-4	0.69	INTRON CG9663	TF binding site BDTNP1_TFBS_da
2L	5158081	2L_5158081_SNP [dm3] 2L_5158081_SNP [dm6]	T	C	3.253e^-4	0.69	UTR_3_PRIME Msp300 INTRON Msp300
2R	5872151	2R_5872151_SNP [dm3] 2R_9984646_SNP [dm6]	A	T	3.255e^-4	0.69	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	13048482	2L_13048482_SNP [dm3] 2L_13048482_SNP [dm6]	T	G	3.259e^-4	0.69	INTRON CG9932
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	3.259e^-4	0.69	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	3.259e^-4	0.69	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	3.259e^-4	0.69	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	3.259e^-4	0.69	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	18362137	3L_18362137_SNP [dm3] 3L_18369037_SNP [dm6]	A	G	3.264e^-4	0.69	INTERGENIC
X	11072409	X_11072409_SNP [dm3] X_11178376_SNP [dm6]	T	A	3.269e^-4	0.69	INTERGENIC
3R	14184972	3R_14184972_SNP [dm3] 3R_18359250_SNP [dm6]	C	T	3.273e^-4	0.69	INTRON CG15803
2L	15549105	2L_15549105_SNP [dm3] 2L_15549105_SNP [dm6]	A	T	3.275e^-4	0.69	UPSTREAM CR45728 DOWNSTREAM Skadu INTERGENIC
3R	6691058	3R_6691058_SNP [dm3] 3R_10865336_SNP [dm6]	T	G	3.280e^-4	0.69	UTR_3_PRIME SelR INTRON SelR
3L	19410768	3L_19410768_SNP [dm3] 3L_19417668_SNP [dm6]	C	T	3.280e^-4	0.69	INTERGENIC
3R	9677097	3R_9677097_SNP [dm3] 3R_13851375_SNP [dm6]	G	T	3.281e^-4	0.69	INTERGENIC
3R	4877749	3R_4877749_DEL [dm3] 3R_9052027_DEL [dm6]	TTTTACT	C	3.282e^-4	0.69	UTR_3_PRIME Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2564623	2L_2564623_SNP [dm3] 2L_2564623_SNP [dm6]	T	C	3.287e^-4	0.69	NON_SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
3R	7989039	3R_7989039_SNP [dm3] 3R_12163317_SNP [dm6]	T	G	3.293e^-4	0.69	NON_SYNONYMOUS_CODING Cpn
3R	15468625	3R_15468625_SNP [dm3] 3R_19642903_SNP [dm6]	T	A	3.295e^-4	0.69	UPSTREAM subdued DOWNSTREAM Vha13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	13529402	X_13529402_SNP [dm3] X_13635369_SNP [dm6]	T	C	3.303e^-4	0.69	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15657426	2R_15657426_SNP [dm3] 2R_19769921_SNP [dm6]	G	A	3.303e^-4	0.69	INTRON Or56a
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	3.306e^-4	0.69	INTRON CG17834
3L	13500684	3L_13500684_SNP [dm3] 3L_13507584_SNP [dm6]	T	A	3.307e^-4	0.69	SYNONYMOUS_CODING Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10614648	3L_10614648_SNP [dm3] 3L_10621548_SNP [dm6]	C	G	3.310e^-4	0.69	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7728095	3R_7728095_SNP [dm3] 3R_11902373_SNP [dm6]	T	C	3.315e^-4	0.69	INTRON Cad87A
2R	8455429	2R_8455429_SNP [dm3] 2R_12567924_SNP [dm6]	C	G	3.325e^-4	0.691	SYNONYMOUS_CODING Cyp301a1
3L	14486426	3L_14486426_SNP [dm3] 3L_14493326_SNP [dm6]	C	G	3.336e^-4	0.692	INTRON bbg
2L	9847564	2L_9847564_SNP [dm3] 2L_9847564_SNP [dm6]	T	C	3.340e^-4	0.692	UPSTREAM CR43766 INTRON nAChRalpha6
2L	3093771	2L_3093771_SNP [dm3] 2L_3093771_SNP [dm6]	A	T	3.341e^-4	0.692	INTRON toc
3R	18229505	3R_18229505_SNP [dm3] 3R_22403783_SNP [dm6]	T	A	3.344e^-4	0.692	INTRON CG13856
3R	23277491	3R_23277491_SNP [dm3] 3R_27451769_SNP [dm6]	G	T	3.352e^-4	0.693	INTERGENIC
3R	15468404	3R_15468404_SNP [dm3] 3R_19642682_SNP [dm6]	C	A	3.356e^-4	0.693	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5423707	3L_5423707_SNP [dm3] 3L_5430607_SNP [dm6]	C	T	3.356e^-4	0.693	INTRON CG34391
3R	18252574	3R_18252574_SNP [dm3] 3R_22426852_SNP [dm6]	C	T	3.368e^-4	0.693	NON_SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14346596	2R_14346596_SNP [dm3] 2R_18459091_SNP [dm6]	A	G	3.368e^-4	0.693	DOWNSTREAM CG30116 INTRON CG30116
3L	4103396	3L_4103396_SNP [dm3] 3L_4103396_SNP [dm6]	T	A	3.371e^-4	0.693	UPSTREAM Fit1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14502635	2R_14502635_SNP [dm3] 2R_18615130_SNP [dm6]	G	A	3.376e^-4	0.693	UTR_5_PRIME CG5323 UPSTREAM CG5327 & 1 other DOWNSTREAM CG10927	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16543864	2L_16543864_SNP [dm3] 2L_16543864_SNP [dm6]	G	C	3.383e^-4	0.693	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	20252634	3L_20252634_SNP [dm3] 3L_20259534_SNP [dm6]	C	T	3.389e^-4	0.693	UPSTREAM rdgC INTRON rdgC
2L	2137305	2L_2137305_SNP [dm3] 2L_2137305_SNP [dm6]	T	C	3.390e^-4	0.693	DOWNSTREAM tho2 & 1 other INTERGENIC
X	14434961	X_14434961_SNP [dm3] X_14540928_SNP [dm6]	A	G	3.390e^-4	0.693	EXON CR45521
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	3.395e^-4	0.693	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	3.396e^-4	0.693	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	3.407e^-4	0.694	INTERGENIC
3R	7735809	3R_7735809_SNP [dm3] 3R_11910087_SNP [dm6]	A	G	3.413e^-4	0.694	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	3.416e^-4	0.694	INTRON hppy
2R	13552883	2R_13552883_SNP [dm3] 2R_17665378_SNP [dm6]	C	A	3.418e^-4	0.694	UPSTREAM eIF3-S8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	21360753	2L_21360753_SNP [dm3] 2L_21360753_SNP [dm6]	T	G	3.426e^-4	0.694	UPSTREAM dtr INTERGENIC
2L	13091600	2L_13091600_DEL [dm3] 2L_13091600_DEL [dm6]	GG	G	3.429e^-4	0.694	INTERGENIC
3L	1199481	3L_1199481_SNP [dm3] 3L_1199481_SNP [dm6]	G	A	3.434e^-4	0.694	DOWNSTREAM Aplip1 INTERGENIC
2L	854688	2L_854688_SNP [dm3] 2L_854688_SNP [dm6]	G	A	3.434e^-4	0.694	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10314834	3L_10314834_SNP [dm3] 3L_10321734_SNP [dm6]	A	C	3.435e^-4	0.694	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	3.439e^-4	0.694	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	1033736	2L_1033736_SNP [dm3] 2L_1033736_SNP [dm6]	G	A	3.465e^-4	0.698	SYNONYMOUS_CODING IA-2
3R	14119706	3R_14119706_SNP [dm3] 3R_18293984_SNP [dm6]	A	G	3.469e^-4	0.698	INTRON l_3_05822
3L	11584447	3L_11584447_SNP [dm3] 3L_11591347_SNP [dm6]	G	A	3.475e^-4	0.698	UPSTREAM CG33268 INTERGENIC
2R	11871447	2R_11871447_SNP [dm3] 2R_15983942_SNP [dm6]	T	C	3.476e^-4	0.698	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	3.479e^-4	0.698	INTRON Elk
3L	10614519	3L_10614519_SNP [dm3] 3L_10621419_SNP [dm6]	G	C	3.482e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10614486	3L_10614486_SNP [dm3] 3L_10621386_SNP [dm6]	G	A	3.492e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	11624833	2R_11624833_SNP [dm3] 2R_15737328_SNP [dm6]	C	T	3.493e^-4	0.699	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1548662	2L_1548662_SNP [dm3] 2L_1548662_SNP [dm6]	G	A	3.498e^-4	0.7	INTERGENIC
2R	15393018	2R_15393018_SNP [dm3] 2R_19505513_SNP [dm6]	A	G	3.503e^-4	0.7	DOWNSTREAM CG11007 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1742031	3R_1742031_SNP [dm3] 3R_5916309_SNP [dm6]	A	G	3.508e^-4	0.7	INTRON CG34113
3R	11975243	3R_11975243_SNP [dm3] 3R_16149521_SNP [dm6]	G	A	3.512e^-4	0.7	UTR_3_PRIME CG5916 & 1 other DOWNSTREAM CG5916
3R	3429613	3R_3429613_SNP [dm3] 3R_7603891_SNP [dm6]	T	C	3.517e^-4	0.7	UTR_5_PRIME CG34127
3R	15466057	3R_15466057_SNP [dm3] 3R_19640335_SNP [dm6]	T	A	3.519e^-4	0.7	INTRON subdued
2L	10704121	2L_10704121_SNP [dm3] 2L_10704121_SNP [dm6]	A	T	3.527e^-4	0.7	INTRON Lip2 & 1 other
X	10854595	X_10854595_SNP [dm3] X_10960562_SNP [dm6]	A	C	3.537e^-4	0.7	INTRON Myo10A	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	3099321	2L_3099321_SNP [dm3] 2L_3099321_SNP [dm6]	A	C	3.537e^-4	0.7	INTRON toc
3R	23673577	3R_23673577_SNP [dm3] 3R_27847855_SNP [dm6]	C	T	3.537e^-4	0.7	DOWNSTREAM Or98a INTRON CG34353
2L	19241531	2L_19241531_SNP [dm3] 2L_19241531_SNP [dm6]	T	C	3.540e^-4	0.7	INTERGENIC
2L	7462764	2L_7462764_SNP [dm3] 2L_7462764_SNP [dm6]	A	G	3.544e^-4	0.7	UPSTREAM Gr28b INTERGENIC
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	3.545e^-4	0.7	INTRON Dh31
3L	15074626	3L_15074626_SNP [dm3] 3L_15081526_SNP [dm6]	T	A	3.554e^-4	0.7	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16543913	2L_16543913_SNP [dm3] 2L_16543913_SNP [dm6]	T	A	3.555e^-4	0.7	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	3.561e^-4	0.7	INTRON Rgk1
3R	15466061	3R_15466061_SNP [dm3] 3R_19640339_SNP [dm6]	C	T	3.562e^-4	0.7	INTRON subdued
2R	14662925	2R_14662925_SNP [dm3] 2R_18775420_SNP [dm6]	T	A	3.563e^-4	0.7	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	11071844	X_11071844_SNP [dm3] X_11177811_SNP [dm6]	A	G	3.573e^-4	0.7	INTERGENIC
3R	17879003	3R_17879003_SNP [dm3] 3R_22053281_SNP [dm6]	G	A	3.578e^-4	0.7	INTRON how	regulatory region REDfly_CRMs
2L	8512119	2L_8512119_INS [dm3] 2L_8512119_INS [dm6]	T	TATTAGTAGAGACAGAC...	3.580e^-4	0.7	UPSTREAM CG13096 DOWNSTREAM CG13097 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	10915601	2L_10915601_SNP [dm3] 2L_10915601_SNP [dm6]	C	T	3.583e^-4	0.7	INTERGENIC
3L	14105304	3L_14105304_SNP [dm3] 3L_14112204_SNP [dm6]	C	T	3.601e^-4	0.7	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16131433	3L_16131433_SNP [dm3] 3L_16138333_SNP [dm6]	A	C	3.602e^-4	0.7	UTR_3_PRIME CG5151 UPSTREAM CG5157
2L	4925620	2L_4925620_SNP [dm3] 2L_4925620_SNP [dm6]	C	T	3.603e^-4	0.7	INTRON hoe1
3L	3767125	3L_3767125_SNP [dm3] 3L_3767125_SNP [dm6]	G	A	3.609e^-4	0.7	INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	9412284	2L_9412284_SNP [dm3] 2L_9412284_SNP [dm6]	T	C	3.613e^-4	0.7	INTRON Shawl
3L	1237638	3L_1237638_SNP [dm3] 3L_1237638_SNP [dm6]	C	T	3.613e^-4	0.7	NON_SYNONYMOUS_CODING CG9192 INTRON CG9194	TF binding site mE1_TFBS_chinmo
2R	18252867	2R_18252867_SNP [dm3] 2R_22365362_SNP [dm6]	T	A	3.617e^-4	0.7	INTRON Liprin-gamma
2L	16543938	2L_16543938_SNP [dm3] 2L_16543938_SNP [dm6]	A	G	3.617e^-4	0.7	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9102280	2L_9102280_SNP [dm3] 2L_9102280_SNP [dm6]	T	A	3.617e^-4	0.7	INTERGENIC
3L	11912960	3L_11912960_SNP [dm3] 3L_11919860_SNP [dm6]	A	G	3.619e^-4	0.7	INTRON CG44837
2L	11668299	2L_11668299_SNP [dm3] 2L_11668299_SNP [dm6]	G	A	3.633e^-4	0.7	INTERGENIC
3L	8161896	3L_8161896_SNP [dm3] 3L_8168796_SNP [dm6]	G	A	3.638e^-4	0.7	INTERGENIC
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	3.638e^-4	0.7	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
3L	3767130	3L_3767130_SNP [dm3] 3L_3767130_SNP [dm6]	C	A	3.644e^-4	0.7	SPLICE_SITE_REGION CG32264 INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	12044274	2L_12044274_INS [dm3] 2L_12044274_INS [dm6]	T	TT	3.645e^-4	0.7	UTR_5_PRIME CG6785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	1036275	X_1036275_SNP [dm3] X_1142242_SNP [dm6]	A	T	3.649e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7719034	3R_7719034_SNP [dm3] 3R_11893312_SNP [dm6]	G	A	3.650e^-4	0.7	UPSTREAM CG6971 DOWNSTREAM CG31368 & 1 other INTERGENIC
3R	27263527	3R_27263527_DEL [dm3] 3R_31437805_DEL [dm6]	ACACAGACAGA...	A	3.651e^-4	0.7	INTRON Gprk2
2R	7775518	2R_7775518_SNP [dm3] 2R_11888013_SNP [dm6]	C	G	3.653e^-4	0.7	NON_SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff
2L	13097729	2L_13097729_SNP [dm3] 2L_13097729_SNP [dm6]	G	C	3.653e^-4	0.7	DOWNSTREAM CR45447 INTERGENIC
3R	26245307	3R_26245307_SNP [dm3] 3R_30419585_SNP [dm6]	T	G	3.671e^-4	0.701	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 INTRON CG42740 & 1 other	TF binding site mE1_TFBS_inv
3R	13302466	3R_13302466_SNP [dm3] 3R_17476744_SNP [dm6]	C	G	3.679e^-4	0.701	INTRON Dscam3
2L	343092	2L_343092_SNP [dm3] 2L_343092_SNP [dm6]	C	T	3.688e^-4	0.701	SYNONYMOUS_CODING Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12521070	2R_12521070_SNP [dm3] 2R_16633565_SNP [dm6]	A	C	3.689e^-4	0.701	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15885596	2R_15885596_SNP [dm3] 2R_19998091_SNP [dm6]	T	A	3.691e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20252523	3L_20252523_SNP [dm3] 3L_20259423_SNP [dm6]	G	A	3.696e^-4	0.701	UPSTREAM rdgC INTRON rdgC
X	17624257	X_17624257_SNP [dm3] X_17730224_SNP [dm6]	G	A	3.708e^-4	0.701	INTRON CG42684
3R	17209280	3R_17209280_SNP [dm3] 3R_21383558_SNP [dm6]	C	T	3.709e^-4	0.701	INTERGENIC
2R	17879259	2R_17879259_SNP [dm3] 2R_21991754_SNP [dm6]	C	T	3.710e^-4	0.701	INTRON CG34370
3R	10130386	3R_10130386_SNP [dm3] 3R_14304664_SNP [dm6]	G	A	3.711e^-4	0.701	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259
3R	6249228	3R_6249228_SNP [dm3] 3R_10423506_SNP [dm6]	T	A	3.713e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	3.717e^-4	0.701	INTRON Adk1
3R	15466122	3R_15466122_SNP [dm3] 3R_19640400_SNP [dm6]	T	A	3.729e^-4	0.701	INTRON subdued
2R	12546124	2R_12546124_SNP [dm3] 2R_16658619_SNP [dm6]	C	T	3.731e^-4	0.701	INTRON Picot
2R	16967976	2R_16967976_SNP [dm3] 2R_21080471_SNP [dm6]	A	G	3.739e^-4	0.701	UPSTREAM Treh INTRON Treh
2R	16968011	2R_16968011_SNP [dm3] 2R_21080506_SNP [dm6]	G	T	3.739e^-4	0.701	UPSTREAM Treh INTRON Treh
X	19068951	X_19068951_SNP [dm3] X_19174918_SNP [dm6]	G	A	3.746e^-4	0.701	UPSTREAM pncr004:X INTERGENIC
2L	5672389	2L_5672389_SNP [dm3] 2L_5672389_SNP [dm6]	G	A	3.752e^-4	0.701	INTERGENIC
2L	9098562	2L_9098562_SNP [dm3] 2L_9098562_SNP [dm6]	C	A	3.753e^-4	0.701	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	10775626	3R_10775626_SNP [dm3] 3R_14949904_SNP [dm6]	G	A	3.754e^-4	0.701	INTERGENIC
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	3.755e^-4	0.701	INTRON fne

By genomic position
Variant impact
Gene name

Cuticul_x_y_C24_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results