DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.357e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09481
In_3R_K	0.01584

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.1445	0.0281
In_3R_K	14.8024	0.0006

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2782 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	2.348e^-8	0.036	INTRON Cad87A
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	4.436e^-8	0.036	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	6.212e^-8	0.036	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	7.593e^-8	0.036	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.949e^-7	0.071	INTERGENIC
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	2.258e^-7	0.071	INTRON salm
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	4.344e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	4.879e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14784057	2L_14784057_SNP [dm3] 2L_14784057_SNP [dm6]	C	T	5.596e^-7	0.085	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	5.911e^-7	0.085	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	6.560e^-7	0.085	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	6.696e^-7	0.085	INTRON beat-Vc
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	6.696e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	7.383e^-7	0.085	INTRON salm	TF binding site mE1_TFBS_inv
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	7.486e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	8.150e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	8.373e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	8.408e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	8.619e^-7	0.085	UTR_5_PRIME CG15186
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	9.037e^-7	0.085	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	9.895e^-7	0.088	INTRON beat-Vc
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	1.055e^-6	0.09	INTRON Octbeta3R
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	1.139e^-6	0.091	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447279	2L_11447279_SNP [dm3] 2L_11447279_SNP [dm6]	C	T	1.199e^-6	0.091	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	1.220e^-6	0.091	INTRON salm
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	1.329e^-6	0.096	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	1.481e^-6	0.103	INTRON beat-Vc
2L	14784018	2L_14784018_SNP [dm3] 2L_14784018_SNP [dm6]	C	T	1.686e^-6	0.113	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	1.852e^-6	0.12	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14788377	2L_14788377_SNP [dm3] 2L_14788377_SNP [dm6]	G	A	2.009e^-6	0.121	INTERGENIC
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	2.172e^-6	0.121	INTRON salm
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	2.183e^-6	0.121	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	2.188e^-6	0.121	INTERGENIC
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	2.193e^-6	0.121	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	2.320e^-6	0.124	SYNONYMOUS_CODING beat-Vc
3R	8578327	3R_8578327_SNP [dm3] 3R_12752605_SNP [dm6]	T	C	2.500e^-6	0.13	SYNONYMOUS_CODING beat-Vc
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	2.831e^-6	0.143	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	3.066e^-6	0.151	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	3.729e^-6	0.177	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	3.825e^-6	0.177	INTRON salm
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	3.905e^-6	0.177	INTRON salm
2L	14783992	2L_14783992_SNP [dm3] 2L_14783992_SNP [dm6]	C	T	3.965e^-6	0.177	NON_SYNONYMOUS_CODING CG18636 SPLICE_SITE_REGION CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22006730	3R_22006730_SNP [dm3] 3R_26181008_SNP [dm6]	C	A	4.101e^-6	0.179	INTRON CG31323
3R	18982582	3R_18982582_SNP [dm3] 3R_23156860_SNP [dm6]	T	C	4.198e^-6	0.179	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14784020	2L_14784020_SNP [dm3] 2L_14784020_SNP [dm6]	A	G	4.303e^-6	0.179	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	4.740e^-6	0.189	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	4.780e^-6	0.189	INTRON Octbeta3R
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	4.834e^-6	0.189	INTRON beat-Vc
2R	5029648	2R_5029648_SNP [dm3] 2R_9142143_SNP [dm6]	G	C	5.107e^-6	0.195	DOWNSTREAM shrb & 2 others INTERGENIC
2L	11465743	2L_11465743_SNP [dm3] 2L_11465743_SNP [dm6]	T	C	5.339e^-6	0.2	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	19711631	2R_19711631_SNP [dm3] 2R_23824108_SNP [dm6]	T	C	5.901e^-6	0.215	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	5.962e^-6	0.215	INTERGENIC
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	6.083e^-6	0.215	INTRON salm
2L	11447890	2L_11447890_SNP [dm3] 2L_11447890_SNP [dm6]	T	A	6.257e^-6	0.216	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	6.323e^-6	0.216	SYNONYMOUS_CODING GC1
3R	8783040	3R_8783040_INS [dm3] 3R_12957318_INS [dm6]	A	AA	6.998e^-6	0.234	INTRON grsm
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	7.309e^-6	0.241	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	7.719e^-6	0.25	INTRON cu
X	7129922	X_7129922_SNP [dm3] X_7235889_SNP [dm6]	T	C	8.093e^-6	0.254	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	7732659	3R_7732659_SNP [dm3] 3R_11906937_SNP [dm6]	A	G	8.171e^-6	0.254	INTRON Cad87A
2L	11454725	2L_11454725_SNP [dm3] 2L_11454725_SNP [dm6]	G	A	8.248e^-6	0.254	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14788313	2L_14788313_SNP [dm3] 2L_14788313_SNP [dm6]	A	T	8.504e^-6	0.257	INTERGENIC
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	9.742e^-6	0.287	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	14783090	2L_14783090_SNP [dm3] 2L_14783090_SNP [dm6]	G	T	9.791e^-6	0.287	DOWNSTREAM CG18636 EXON CR15280
2L	14780110	2L_14780110_SNP [dm3] 2L_14780110_SNP [dm6]	C	T	9.990e^-6	0.288	INTERGENIC
3R	8460035	3R_8460035_SNP [dm3] 3R_12634313_SNP [dm6]	G	A	1.036e^-5	0.295	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
3R	7732716	3R_7732716_SNP [dm3] 3R_11906994_SNP [dm6]	A	T	1.102e^-5	0.308	INTRON Cad87A
3L	9425183	3L_9425183_SNP [dm3] 3L_9432083_SNP [dm6]	A	G	1.218e^-5	0.317	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7732699	3R_7732699_SNP [dm3] 3R_11906977_SNP [dm6]	C	T	1.220e^-5	0.317	INTRON Cad87A
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	1.229e^-5	0.317	INTRON salm
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	1.270e^-5	0.317	INTRON salm	TF binding site mE1_TFBS_inv
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	1.291e^-5	0.317	INTRON salm
2L	14786256	2L_14786256_SNP [dm3] 2L_14786256_SNP [dm6]	T	A	1.304e^-5	0.317	INTERGENIC
3R	8464121	3R_8464121_SNP [dm3] 3R_12638399_SNP [dm6]	G	T	1.321e^-5	0.317	UPSTREAM CG11608 DOWNSTREAM CG11600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11519695	3L_11519695_SNP [dm3] 3L_11526595_SNP [dm6]	C	A	1.324e^-5	0.317	INTRON Mob2
3R	7797512	3R_7797512_SNP [dm3] 3R_11971790_SNP [dm6]	T	G	1.336e^-5	0.317	SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	1.338e^-5	0.317	INTERGENIC
3R	7732676	3R_7732676_SNP [dm3] 3R_11906954_SNP [dm6]	A	G	1.342e^-5	0.317	INTRON Cad87A
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	1.353e^-5	0.317	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	1.390e^-5	0.317	INTERGENIC
3R	8868845	3R_8868845_SNP [dm3] 3R_13043123_SNP [dm6]	A	G	1.408e^-5	0.317	UPSTREAM snk INTRON CG11670
2L	11466020	2L_11466020_SNP [dm3] 2L_11466020_SNP [dm6]	A	T	1.411e^-5	0.317	INTERGENIC
3L	19171927	3L_19171927_SNP [dm3] 3L_19178827_SNP [dm6]	T	G	1.419e^-5	0.317	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14782756	2L_14782756_SNP [dm3] 2L_14782756_SNP [dm6]	A	G	1.431e^-5	0.317	DOWNSTREAM CG18636 INTRON CR15280
2R	5829932	2R_5829932_SNP [dm3] 2R_9942427_SNP [dm6]	A	T	1.450e^-5	0.317	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	14785157	2L_14785157_SNP [dm3] 2L_14785157_SNP [dm6]	T	A	1.452e^-5	0.317	UPSTREAM CG18636 INTERGENIC
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	1.472e^-5	0.317	INTRON Cad87A
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	1.532e^-5	0.319	INTRON salm
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	1.539e^-5	0.319	INTERGENIC
3R	8785260	3R_8785260_SNP [dm3] 3R_12959538_SNP [dm6]	G	T	1.551e^-5	0.319	SYNONYMOUS_CODING grsm	TF binding site mE1_TFBS_cad
3R	8194981	3R_8194981_DEL [dm3] 3R_12369259_DEL [dm6]	ACTGAACGGAATTCGAAGAG...	A	1.554e^-5	0.319	UTR_5_PRIME GstD1 UPSTREAM GstD1 INTRAGENIC GstD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1502363	3L_1502363_DEL [dm3] 3L_1502363_DEL [dm6]	AA	A	1.576e^-5	0.319	UPSTREAM Psa DOWNSTREAM cue INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	11465793	2L_11465793_SNP [dm3] 2L_11465793_SNP [dm6]	A	G	1.609e^-5	0.319	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11448546	2L_11448546_SNP [dm3] 2L_11448546_SNP [dm6]	C	A	1.612e^-5	0.319	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	1.631e^-5	0.319	INTRON timeout & 2 others
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	1.634e^-5	0.319	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	1.651e^-5	0.319	INTERGENIC
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	1.683e^-5	0.322	INTRON Cyp313a4
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	1.725e^-5	0.327	UTR_3_PRIME Teh1
2L	14784884	2L_14784884_SNP [dm3] 2L_14784884_SNP [dm6]	T	A	1.779e^-5	0.332	UPSTREAM CG18636 INTERGENIC
3L	1595582	3L_1595582_SNP [dm3] 3L_1595582_SNP [dm6]	G	A	1.827e^-5	0.332	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7743614	3R_7743614_SNP [dm3] 3R_11917892_SNP [dm6]	A	C	1.844e^-5	0.332	INTRON Cad87A
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	1.878e^-5	0.332	INTRON timeout & 2 others
3R	7732618	3R_7732618_SNP [dm3] 3R_11906896_SNP [dm6]	G	C	1.896e^-5	0.332	INTRON Cad87A
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	1.896e^-5	0.332	EXON CR44942	TF binding site BDTNP1_TFBS_twi
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	1.902e^-5	0.332	INTRON lilli
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	1.912e^-5	0.332	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	1.963e^-5	0.332	UPSTREAM CG44521 INTRON sif
3R	18982411	3R_18982411_DEL [dm3] 3R_23156689_DEL [dm6]	TAAAACCGCT	T	1.964e^-5	0.332	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8578318	3R_8578318_SNP [dm3] 3R_12752596_SNP [dm6]	A	G	1.988e^-5	0.332	SYNONYMOUS_CODING beat-Vc
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	2.004e^-5	0.332	INTRON salm
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	2.006e^-5	0.332	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	2.026e^-5	0.332	INTRON salm
3R	8743846	3R_8743846_SNP [dm3] 3R_12918124_SNP [dm6]	T	A	2.033e^-5	0.332	INTRON beat-Vb
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	2.049e^-5	0.332	UTR_3_PRIME CG9970 INTRON Shab
X	8532109	X_8532109_SNP [dm3] X_8638076_SNP [dm6]	T	G	2.073e^-5	0.332	INTRON oc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	2.091e^-5	0.332	INTERGENIC
2R	9935061	2R_9935061_SNP [dm3] 2R_14047556_SNP [dm6]	T	C	2.117e^-5	0.332	INTRON mam
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	2.125e^-5	0.332	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	2.140e^-5	0.332	INTRON Octbeta3R
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	2.156e^-5	0.332	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	2.169e^-5	0.332	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
3L	22592769	3L_22592769_SNP [dm3] 3L_22599669_SNP [dm6]	C	T	2.175e^-5	0.332	INTRON CG14459
3L	2915581	3L_2915581_SNP [dm3] 3L_2915581_SNP [dm6]	A	G	2.200e^-5	0.332	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	2.216e^-5	0.332	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	2.242e^-5	0.332	INTRON salm
3R	8864676	3R_8864676_SNP [dm3] 3R_13038954_SNP [dm6]	A	G	2.249e^-5	0.332	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
3R	8891374	3R_8891374_SNP [dm3] 3R_13065652_SNP [dm6]	T	G	2.272e^-5	0.332	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	2.287e^-5	0.332	INTRON salm
2R	12120427	2R_12120427_SNP [dm3] 2R_16232922_SNP [dm6]	C	T	2.353e^-5	0.339	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13437613	2L_13437613_SNP [dm3] 2L_13437613_SNP [dm6]	C	T	2.432e^-5	0.348	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
X	15217828	X_15217828_SNP [dm3] X_15323795_SNP [dm6]	G	C	2.507e^-5	0.351	INTRON Top1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	2.512e^-5	0.351	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2715961	3L_2715961_SNP [dm3] 3L_2715961_SNP [dm6]	T	G	2.532e^-5	0.351	INTERGENIC
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	2.537e^-5	0.351	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11427499	2L_11427499_SNP [dm3] 2L_11427499_SNP [dm6]	A	G	2.560e^-5	0.351	INTERGENIC
3R	7026683	3R_7026683_SNP [dm3] 3R_11200961_SNP [dm6]	A	C	2.574e^-5	0.351	INTRON cu
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	2.589e^-5	0.351	INTRON Ca-beta
2L	19251764	2L_19251764_SNP [dm3] 2L_19251764_SNP [dm6]	A	G	2.601e^-5	0.351	INTERGENIC
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	2.627e^-5	0.352	INTERGENIC
3R	14876233	3R_14876233_SNP [dm3] 3R_19050511_SNP [dm6]	C	T	2.668e^-5	0.353	INTRON cdi
3R	2312427	3R_2312427_SNP [dm3] 3R_6486705_SNP [dm6]	C	T	2.673e^-5	0.353	UPSTREAM CG15186 INTRON CG15186
2R	1990437	2R_1990437_SNP [dm3] 2R_6102932_SNP [dm6]	G	A	2.727e^-5	0.354	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8994351	3R_8994351_SNP [dm3] 3R_13168629_SNP [dm6]	T	C	2.752e^-5	0.354	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11604008	2R_11604008_SNP [dm3] 2R_15716503_SNP [dm6]	C	G	2.775e^-5	0.354	INTERGENIC
3R	8555320	3R_8555320_SNP [dm3] 3R_12729598_SNP [dm6]	T	A	2.796e^-5	0.354	INTERGENIC
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	2.806e^-5	0.354	SYNONYMOUS_CODING Lim1
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	2.827e^-5	0.354	INTRON Octbeta3R
3R	9052248	3R_9052248_SNP [dm3] 3R_13226526_SNP [dm6]	A	T	2.832e^-5	0.354	UTR_3_PRIME Ace INTRON Ace
2R	11239579	2R_11239579_INS [dm3] 2R_15352074_INS [dm6]	A	AACCA	2.837e^-5	0.354	INTRON unc-5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	3451899	X_3451899_INS [dm3] X_3557866_INS [dm6]	A	AA	2.848e^-5	0.354	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_da
3R	9059565	3R_9059565_SNP [dm3] 3R_13233843_SNP [dm6]	A	G	2.935e^-5	0.361	INTRON Ace
3R	8872581	3R_8872581_SNP [dm3] 3R_13046859_SNP [dm6]	G	T	2.942e^-5	0.361	SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	11633126	2L_11633126_SNP [dm3] 2L_11633126_SNP [dm6]	C	T	2.967e^-5	0.361	INTERGENIC
2L	14960510	2L_14960510_SNP [dm3] 2L_14960510_SNP [dm6]	A	C	3.030e^-5	0.363	INTRON CG42313
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	3.044e^-5	0.363	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7002414	3R_7002414_SNP [dm3] 3R_11176692_SNP [dm6]	A	C	3.046e^-5	0.363	SYNONYMOUS_CODING Ugt86Dh
3R	7760213	3R_7760213_SNP [dm3] 3R_11934491_SNP [dm6]	C	A	3.062e^-5	0.363	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	3.095e^-5	0.363	INTRON salm
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	3.096e^-5	0.363	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	8346464	3R_8346464_SNP [dm3] 3R_12520742_SNP [dm6]	C	A	3.143e^-5	0.364	INTRON Octbeta3R
3R	18983447	3R_18983447_SNP [dm3] 3R_23157725_SNP [dm6]	G	A	3.149e^-5	0.364	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	7853617	3R_7853617_SNP [dm3] 3R_12027895_SNP [dm6]	G	A	3.166e^-5	0.364	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	3.211e^-5	0.367	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	3.234e^-5	0.368	INTERGENIC
3L	4355966	3L_4355966_SNP [dm3] 3L_4355966_SNP [dm6]	C	T	3.270e^-5	0.37	INTRON Cip4
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	3.296e^-5	0.37	INTRON salm
3R	8459722	3R_8459722_SNP [dm3] 3R_12634000_SNP [dm6]	G	A	3.349e^-5	0.374	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598 DOWNSTREAM Not10
2L	14780162	2L_14780162_SNP [dm3] 2L_14780162_SNP [dm6]	C	T	3.394e^-5	0.377	INTERGENIC
3R	8707874	3R_8707874_SNP [dm3] 3R_12882152_SNP [dm6]	T	C	3.442e^-5	0.38	INTERGENIC
3R	7757160	3R_7757160_SNP [dm3] 3R_11931438_SNP [dm6]	A	G	3.522e^-5	0.384	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3L	1254004	3L_1254004_SNP [dm3] 3L_1254004_SNP [dm6]	A	C	3.535e^-5	0.384	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	9059786	3R_9059786_SNP [dm3] 3R_13234064_SNP [dm6]	G	C	3.556e^-5	0.384	INTRON Ace
2L	16161225	2L_16161225_SNP [dm3] 2L_16161225_SNP [dm6]	T	G	3.566e^-5	0.384	INTERGENIC
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	3.585e^-5	0.384	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8458436	3R_8458436_SNP [dm3] 3R_12632714_SNP [dm6]	C	T	3.659e^-5	0.39	SYNONYMOUS_CODING Not10 UPSTREAM CG18530	TF binding site mE1_TFBS_cad
3R	8707659	3R_8707659_SNP [dm3] 3R_12881937_SNP [dm6]	T	A	3.735e^-5	0.39	INTERGENIC
X	12013152	X_12013152_SNP [dm3] X_12119119_SNP [dm6]	A	G	3.753e^-5	0.39	INTRON Ten-a
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	3.761e^-5	0.39	INTRON salm
3L	7766195	3L_7766195_SNP [dm3] 3L_7773095_SNP [dm6]	A	G	3.763e^-5	0.39	INTRON Clk	regulatory region REDfly_CRMs
X	19430764	X_19430764_SNP [dm3] X_19536731_SNP [dm6]	C	A	3.772e^-5	0.39	INTRON CG32532
X	7964388	X_7964388_INS [dm3] X_8070355_INS [dm6]	G	GAG	3.783e^-5	0.39	UTR_3_PRIME Upf2 DOWNSTREAM mys
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	3.848e^-5	0.393	INTRON CG34114
3L	18850157	3L_18850157_SNP [dm3] 3L_18857057_SNP [dm6]	G	A	3.851e^-5	0.393	EXON CR45388
2L	11441686	2L_11441686_SNP [dm3] 2L_11441686_SNP [dm6]	C	T	3.919e^-5	0.395	INTRON salm	TF binding site mE1_TFBS_inv
X	18971679	X_18971679_SNP [dm3] X_19077646_SNP [dm6]	T	A	3.932e^-5	0.395	UPSTREAM CG7406 INTERGENIC
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	3.947e^-5	0.395	INTRON timeout & 2 others
X	8101361	X_8101361_SNP [dm3] X_8207328_SNP [dm6]	T	C	3.955e^-5	0.395	INTRON sdt
3L	12005150	3L_12005150_SNP [dm3] 3L_12012050_SNP [dm6]	G	C	4.016e^-5	0.398	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7746303	3R_7746303_SNP [dm3] 3R_11920581_SNP [dm6]	A	C	4.030e^-5	0.398	INTRON Cad87A
3L	11519697	3L_11519697_SNP [dm3] 3L_11526597_SNP [dm6]	A	G	4.048e^-5	0.398	INTRON Mob2
3R	7794857	3R_7794857_SNP [dm3] 3R_11969135_SNP [dm6]	A	C	4.076e^-5	0.398	INTRON GC1
3L	8651707	3L_8651707_SNP [dm3] 3L_8658607_SNP [dm6]	C	G	4.121e^-5	0.399	INTERGENIC
3R	14945061	3R_14945061_SNP [dm3] 3R_19119339_SNP [dm6]	G	A	4.131e^-5	0.399	INTRON CG6040
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	4.181e^-5	0.402	INTERGENIC
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	4.215e^-5	0.403	INTRON CR44320
2R	11605193	2R_11605193_SNP [dm3] 2R_15717688_SNP [dm6]	A	T	4.252e^-5	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3793970	2L_3793970_SNP [dm3] 2L_3793970_SNP [dm6]	T	C	4.342e^-5	0.407	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
3L	1592766	3L_1592766_SNP [dm3] 3L_1592766_SNP [dm6]	T	C	4.343e^-5	0.407	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11605319	2R_11605319_SNP [dm3] 2R_15717814_SNP [dm6]	A	C	4.344e^-5	0.407	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	4.461e^-5	0.415	SYNONYMOUS_CODING NaPi-T
2R	19109678	2R_19109678_SNP [dm3] 2R_23222155_SNP [dm6]	G	A	4.471e^-5	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10234852	3R_10234852_SNP [dm3] 3R_14409130_SNP [dm6]	C	A	4.536e^-5	0.417	SYNONYMOUS_CODING cv-c
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	4.552e^-5	0.417	UPSTREAM CG11686 & 1 other INTERGENIC
3R	6567987	3R_6567987_SNP [dm3] 3R_10742265_SNP [dm6]	C	T	4.566e^-5	0.417	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	4.576e^-5	0.417	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	4.610e^-5	0.418	UTR_5_PRIME CG11686 UPSTREAM Ace
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	4.721e^-5	0.425	INTRON grsm
2L	11466031	2L_11466031_SNP [dm3] 2L_11466031_SNP [dm6]	C	T	4.738e^-5	0.425	INTERGENIC
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	4.791e^-5	0.426	INTRON salm
X	12013129	X_12013129_INS [dm3] X_12119096_INS [dm6]	T	TTTTAGGCCCCT...	4.793e^-5	0.426	INTRON Ten-a
3R	27082889	3R_27082889_SNP [dm3] 3R_31257167_SNP [dm6]	A	G	4.896e^-5	0.433	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
3L	1851978	3L_1851978_SNP [dm3] 3L_1851978_SNP [dm6]	A	G	4.934e^-5	0.434	SPLICE_SITE_REGION CG13936 INTRON CG13936	TF binding site mE1_TFBS_cad
3R	8888572	3R_8888572_INS [dm3] 3R_13062850_INS [dm6]	T	TACGGTTTATAGT...	4.962e^-5	0.434	INTRON sim
3R	8877058	3R_8877058_SNP [dm3] 3R_13051336_SNP [dm6]	G	A	4.986e^-5	0.434	UPSTREAM pic INTRON CG7966	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2961269	2L_2961269_SNP [dm3] 2L_2961269_SNP [dm6]	G	A	5.002e^-5	0.434	SYNONYMOUS_CODING Rbp9
2L	11466061	2L_11466061_SNP [dm3] 2L_11466061_SNP [dm6]	C	T	5.088e^-5	0.44	INTERGENIC
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	5.141e^-5	0.441	INTRON salm
3R	7732631	3R_7732631_SNP [dm3] 3R_11906909_SNP [dm6]	T	G	5.168e^-5	0.441	INTRON Cad87A
X	18971673	X_18971673_SNP [dm3] X_19077640_SNP [dm6]	A	T	5.171e^-5	0.441	UPSTREAM CG7406 INTERGENIC
3R	8877329	3R_8877329_SNP [dm3] 3R_13051607_SNP [dm6]	T	C	5.230e^-5	0.444	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	8707693	3R_8707693_SNP [dm3] 3R_12881971_SNP [dm6]	A	C	5.291e^-5	0.445	INTERGENIC
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	5.298e^-5	0.445	SYNONYMOUS_CODING decay UPSTREAM Gr89a
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	5.330e^-5	0.445	INTERGENIC
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	5.357e^-5	0.445	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	5.357e^-5	0.445	INTRON timeout & 2 others
2L	8759593	2L_8759593_SNP [dm3] 2L_8759593_SNP [dm6]	A	G	5.433e^-5	0.445	INTERGENIC
2R	17872963	2R_17872963_SNP [dm3] 2R_21985458_SNP [dm6]	A	G	5.467e^-5	0.445	DOWNSTREAM CG30401 INTERGENIC
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	5.474e^-5	0.445	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18983465	3R_18983465_SNP [dm3] 3R_23157743_SNP [dm6]	A	T	5.475e^-5	0.445	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19414987	3L_19414987_SNP [dm3] 3L_19421887_SNP [dm6]	G	A	5.505e^-5	0.445	DOWNSTREAM CR32205 INTERGENIC
2R	17872998	2R_17872998_SNP [dm3] 2R_21985493_SNP [dm6]	A	G	5.508e^-5	0.445	DOWNSTREAM CG30401 INTERGENIC
3R	8782490	3R_8782490_SNP [dm3] 3R_12956768_SNP [dm6]	A	T	5.536e^-5	0.446	INTRON grsm
3L	5645530	3L_5645530_SNP [dm3] 3L_5652430_SNP [dm6]	T	C	5.628e^-5	0.446	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8866923	3R_8866923_SNP [dm3] 3R_13041201_SNP [dm6]	T	C	5.645e^-5	0.446	SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3L	2716165	3L_2716165_SNP [dm3] 3L_2716165_SNP [dm6]	A	T	5.648e^-5	0.446	INTERGENIC
3R	20819947	3R_20819947_SNP [dm3] 3R_24994225_SNP [dm6]	G	A	5.727e^-5	0.446	INTRON tnc	TF binding site mE1_TFBS_cad
3R	20819954	3R_20819954_SNP [dm3] 3R_24994232_SNP [dm6]	A	C	5.727e^-5	0.446	INTRON tnc	TF binding site mE1_TFBS_cad
2L	10832406	2L_10832406_SNP [dm3] 2L_10832406_SNP [dm6]	C	T	5.728e^-5	0.446	INTRON Nos
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	5.750e^-5	0.446	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14782757	2L_14782757_SNP [dm3] 2L_14782757_SNP [dm6]	A	T	5.754e^-5	0.446	DOWNSTREAM CG18636 INTRON CR15280
X	6483242	X_6483242_SNP [dm3] X_6589209_SNP [dm6]	A	C	5.786e^-5	0.446	UPSTREAM CG17717 DOWNSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9802329	3L_9802329_SNP [dm3] 3L_9809229_SNP [dm6]	G	T	5.804e^-5	0.446	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	5.808e^-5	0.446	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7800347	3R_7800347_SNP [dm3] 3R_11974625_SNP [dm6]	A	G	5.877e^-5	0.447	UTR_5_PRIME Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9207177	3L_9207177_SNP [dm3] 3L_9214077_SNP [dm6]	G	T	5.889e^-5	0.447	SYNONYMOUS_CODING CG4476	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8727917	X_8727917_SNP [dm3] X_8833884_SNP [dm6]	T	A	5.902e^-5	0.447	INTERGENIC
3R	5129307	3R_5129307_SNP [dm3] 3R_9303585_SNP [dm6]	G	A	5.922e^-5	0.447	INTRON CG8861
2L	4234877	2L_4234877_SNP [dm3] 2L_4234877_SNP [dm6]	T	C	5.936e^-5	0.447	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20623510	3R_20623510_SNP [dm3] 3R_24797788_SNP [dm6]	A	G	6.022e^-5	0.447	UTR_3_PRIME Ets96B & 1 other
2L	11466776	2L_11466776_SNP [dm3] 2L_11466776_SNP [dm6]	A	G	6.045e^-5	0.447	INTERGENIC
2R	15320704	2R_15320704_SNP [dm3] 2R_19433199_SNP [dm6]	A	C	6.050e^-5	0.447	NON_SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12523847	3L_12523847_SNP [dm3] 3L_12530747_SNP [dm6]	C	T	6.069e^-5	0.447	UTR_3_PRIME Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	6.085e^-5	0.447	INTRON timeout & 2 others
2L	11450545	2L_11450545_SNP [dm3] 2L_11450545_SNP [dm6]	T	A	6.085e^-5	0.447	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	6.098e^-5	0.447	INTERGENIC
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	6.125e^-5	0.447	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7774132	3R_7774132_SNP [dm3] 3R_11948410_SNP [dm6]	A	G	6.196e^-5	0.449	INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1591434	3L_1591434_SNP [dm3] 3L_1591434_SNP [dm6]	C	A	6.201e^-5	0.449	INTRON CG13917
3L	4740479	3L_4740479_INS [dm3] 3L_4740479_INS [dm6]	T	TATATAATAATATGAA...	6.254e^-5	0.45	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	6.260e^-5	0.45	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8707681	3R_8707681_SNP [dm3] 3R_12881959_SNP [dm6]	A	G	6.315e^-5	0.45	INTERGENIC
3R	18983515	3R_18983515_SNP [dm3] 3R_23157793_SNP [dm6]	T	C	6.333e^-5	0.45	SYNONYMOUS_CODING unk DOWNSTREAM VhaAC39-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	6.340e^-5	0.45	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8503729	3R_8503729_SNP [dm3] 3R_12678007_SNP [dm6]	G	A	6.369e^-5	0.451	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	13786495	2R_13786495_SNP [dm3] 2R_17898990_SNP [dm6]	C	G	6.420e^-5	0.452	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	6.453e^-5	0.452	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	6.473e^-5	0.452	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	6.484e^-5	0.452	INTRON grsm
2L	11784409	2L_11784409_SNP [dm3] 2L_11784409_SNP [dm6]	T	C	6.547e^-5	0.455	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11172923	3L_11172923_SNP [dm3] 3L_11179823_SNP [dm6]	A	G	6.595e^-5	0.455	INTRON GlcAT-P
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	6.628e^-5	0.455	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3R	18983464	3R_18983464_SNP [dm3] 3R_23157742_SNP [dm6]	A	C	6.651e^-5	0.455	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12119331	2L_12119331_SNP [dm3] 2L_12119331_SNP [dm6]	C	T	6.676e^-5	0.455	INTRON CG17211
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	6.685e^-5	0.455	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18834834	2R_18834834_SNP [dm3] 2R_22947311_SNP [dm6]	G	C	6.696e^-5	0.455	INTERGENIC
2L	11465996	2L_11465996_SNP [dm3] 2L_11465996_SNP [dm6]	T	C	6.741e^-5	0.455	INTERGENIC
2L	10923897	2L_10923897_SNP [dm3] 2L_10923897_SNP [dm6]	G	A	6.751e^-5	0.455	INTRON dpr2
3R	8867170	3R_8867170_SNP [dm3] 3R_13041448_SNP [dm6]	T	C	6.806e^-5	0.456	NON_SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3L	12523846	3L_12523846_SNP [dm3] 3L_12530746_SNP [dm6]	G	A	6.823e^-5	0.456	UTR_3_PRIME Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8442013	3R_8442013_SNP [dm3] 3R_12616291_SNP [dm6]	G	T	6.829e^-5	0.456	INTERGENIC
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	6.854e^-5	0.456	INTRON Cad87A
3R	8646044	3R_8646044_SNP [dm3] 3R_12820322_SNP [dm6]	C	A	6.911e^-5	0.458	INTERGENIC
3R	7002225	3R_7002225_SNP [dm3] 3R_11176503_SNP [dm6]	A	C	6.963e^-5	0.458	SYNONYMOUS_CODING Ugt86Dh
2R	11605250	2R_11605250_SNP [dm3] 2R_15717745_SNP [dm6]	C	A	6.973e^-5	0.458	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	8517655	3R_8517655_SNP [dm3] 3R_12691933_SNP [dm6]	T	C	6.977e^-5	0.458	UTR_3_PRIME CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18075171	3R_18075171_SNP [dm3] 3R_22249449_SNP [dm6]	A	G	7.014e^-5	0.458	INTRON SKIP
3L	12523849	3L_12523849_SNP [dm3] 3L_12530749_SNP [dm6]	T	C	7.054e^-5	0.459	SYNONYMOUS_STOP Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11587690	3R_11587690_SNP [dm3] 3R_15761968_SNP [dm6]	T	C	7.072e^-5	0.459	INTERGENIC
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	7.096e^-5	0.459	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13482491	2L_13482491_SNP [dm3] 2L_13482491_SNP [dm6]	C	G	7.129e^-5	0.46	INTRON CG42784
3L	8994664	3L_8994664_SNP [dm3] 3L_9001564_SNP [dm6]	T	C	7.156e^-5	0.46	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	8465162	X_8465162_SNP [dm3] X_8571129_SNP [dm6]	C	A	7.250e^-5	0.461	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
2L	14780457	2L_14780457_SNP [dm3] 2L_14780457_SNP [dm6]	G	C	7.263e^-5	0.461	INTERGENIC
2L	496322	2L_496322_SNP [dm3] 2L_496322_SNP [dm6]	C	T	7.273e^-5	0.461	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11415231	2L_11415231_SNP [dm3] 2L_11415231_SNP [dm6]	A	T	7.274e^-5	0.461	INTERGENIC
3R	9045651	3R_9045651_SNP [dm3] 3R_13219929_SNP [dm6]	T	C	7.341e^-5	0.464	NON_SYNONYMOUS_CODING CG8476
2R	17132082	2R_17132082_SNP [dm3] 2R_21244577_SNP [dm6]	C	T	7.411e^-5	0.466	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8877274	3R_8877274_SNP [dm3] 3R_13051552_SNP [dm6]	G	A	7.451e^-5	0.467	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	3029339	3L_3029339_SNP [dm3] 3L_3029339_SNP [dm6]	C	T	7.497e^-5	0.467	INTERGENIC
3R	26006739	3R_26006739_SNP [dm3] 3R_30181017_SNP [dm6]	T	C	7.550e^-5	0.467	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
3R	21045824	3R_21045824_SNP [dm3] 3R_25220102_SNP [dm6]	C	T	7.611e^-5	0.467	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	7.623e^-5	0.467	INTRON VGlut
3R	8771965	3R_8771965_SNP [dm3] 3R_12946243_SNP [dm6]	C	A	7.637e^-5	0.467	INTERGENIC
3R	6858484	3R_6858484_SNP [dm3] 3R_11032762_SNP [dm6]	G	A	7.672e^-5	0.467	INTRON CG34114
3L	12005096	3L_12005096_SNP [dm3] 3L_12011996_SNP [dm6]	C	T	7.676e^-5	0.467	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8742939	3R_8742939_DEL [dm3] 3R_12917217_DEL [dm6]	GCTTTTCG	G	7.677e^-5	0.467	INTRON beat-Vb
X	15210135	X_15210135_SNP [dm3] X_15316102_SNP [dm6]	C	A	7.680e^-5	0.467	INTRON gce EXON CR44961	TF binding site mE1_TFBS_cad
3R	8885665	3R_8885665_SNP [dm3] 3R_13059943_SNP [dm6]	A	G	7.692e^-5	0.467	INTRON sim	TF binding site BDTNP1_TFBS_prd
3L	7272949	3L_7272949_SNP [dm3] 3L_7279849_SNP [dm6]	G	T	7.774e^-5	0.469	INTRON unc-13-4A
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	7.775e^-5	0.469	INTERGENIC	TF binding site mE1_TFBS_cad
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	7.867e^-5	0.473	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14956756	2L_14956756_SNP [dm3] 2L_14956756_SNP [dm6]	G	A	7.916e^-5	0.474	INTRON CG42313
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	7.956e^-5	0.474	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	8482527	3R_8482527_SNP [dm3] 3R_12656805_SNP [dm6]	T	G	8.013e^-5	0.474	UTR_5_PRIME CG6225
3R	8890820	3R_8890820_SNP [dm3] 3R_13065098_SNP [dm6]	A	T	8.052e^-5	0.474	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16042712	2L_16042712_DEL [dm3] 2L_16042712_DEL [dm6]	CA	C	8.118e^-5	0.474	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9070252	3R_9070252_SNP [dm3] 3R_13244530_SNP [dm6]	G	A	8.162e^-5	0.474	INTRON Ace
3R	18064601	3R_18064601_SNP [dm3] 3R_22238879_SNP [dm6]	C	A	8.174e^-5	0.474	INTRON SKIP
2L	14960462	2L_14960462_SNP [dm3] 2L_14960462_SNP [dm6]	A	G	8.186e^-5	0.474	INTRON CG42313
X	14872580	X_14872580_INS [dm3] X_14978547_INS [dm6]	T	TT	8.252e^-5	0.474	INTRON eag
3R	18982542	3R_18982542_SNP [dm3] 3R_23156820_SNP [dm6]	A	G	8.277e^-5	0.474	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8890447	3R_8890447_DEL [dm3] 3R_13064725_DEL [dm6]	GCCC	G	8.315e^-5	0.474	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	8.324e^-5	0.474	INTERGENIC
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	8.356e^-5	0.474	INTRON Indy
2L	14956435	2L_14956435_SNP [dm3] 2L_14956435_SNP [dm6]	T	A	8.381e^-5	0.474	INTRON CG42313
2L	11466809	2L_11466809_SNP [dm3] 2L_11466809_SNP [dm6]	A	C	8.401e^-5	0.474	INTERGENIC
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	8.404e^-5	0.474	INTRON grsm
3R	8884490	3R_8884490_SNP [dm3] 3R_13058768_SNP [dm6]	T	C	8.417e^-5	0.474	INTRON sim	TF binding site mE1_TFBS_Kr
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	8.448e^-5	0.474	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	3446321	X_3446321_SNP [dm3] X_3552288_SNP [dm6]	A	T	8.451e^-5	0.474	INTRON CG32791
3R	9999606	3R_9999606_SNP [dm3] 3R_14173884_SNP [dm6]	G	A	8.472e^-5	0.474	UTR_3_PRIME Dop1R1
2L	14674945	2L_14674945_SNP [dm3] 2L_14674945_SNP [dm6]	G	A	8.490e^-5	0.474	INTRON osp
3R	8458843	3R_8458843_SNP [dm3] 3R_12633121_SNP [dm6]	C	T	8.501e^-5	0.474	UPSTREAM CG18530 DOWNSTREAM Not10 INTERGENIC
X	15560023	X_15560023_SNP [dm3] X_15665990_SNP [dm6]	C	G	8.513e^-5	0.474	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8651610	3R_8651610_DEL [dm3] 3R_12825888_DEL [dm6]	TCGAAATCGCCGGCAGACGT...	T	8.537e^-5	0.474	INTERGENIC
2L	3793811	2L_3793811_SNP [dm3] 2L_3793811_SNP [dm6]	G	A	8.545e^-5	0.474	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9207522	3L_9207522_SNP [dm3] 3L_9214422_SNP [dm6]	A	C	8.619e^-5	0.474	SYNONYMOUS_CODING CG4476
2R	8527164	2R_8527164_SNP [dm3] 2R_12639659_SNP [dm6]	T	C	8.646e^-5	0.474	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad
3L	1446828	3L_1446828_SNP [dm3] 3L_1446828_SNP [dm6]	C	A	8.659e^-5	0.474	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8744735	3R_8744735_SNP [dm3] 3R_12919013_SNP [dm6]	C	T	8.665e^-5	0.474	INTRON beat-Vb
2L	11354609	2L_11354609_SNP [dm3] 2L_11354609_SNP [dm6]	G	A	8.681e^-5	0.474	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	16229363	2L_16229363_SNP [dm3] 2L_16229363_SNP [dm6]	T	G	8.722e^-5	0.474	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6564637	3R_6564637_SNP [dm3] 3R_10738915_SNP [dm6]	A	C	8.761e^-5	0.474	INTRON TkR86C	TF binding site mE1_TFBS_cad
2L	11447295	2L_11447295_INS [dm3] 2L_11447295_INS [dm6]	G	GG	8.764e^-5	0.474	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15217735	X_15217735_SNP [dm3] X_15323702_SNP [dm6]	A	G	8.768e^-5	0.474	SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8654154	3L_8654154_SNP [dm3] 3L_8661054_SNP [dm6]	C	T	8.772e^-5	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9105550	3R_9105550_SNP [dm3] 3R_13279828_SNP [dm6]	T	C	8.839e^-5	0.476	UTR_5_PRIME CG8630
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	8.908e^-5	0.479	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11553642	2L_11553642_SNP [dm3] 2L_11553642_SNP [dm6]	C	T	8.929e^-5	0.479	INTERGENIC
2R	10998545	2R_10998545_SNP [dm3] 2R_15111040_SNP [dm6]	C	G	9.019e^-5	0.481	INTERGENIC
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	9.019e^-5	0.481	INTERGENIC
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	9.089e^-5	0.483	INTRON Octbeta2R
3R	8884427	3R_8884427_DEL [dm3] 3R_13058705_DEL [dm6]	AAGGGAAA	A	9.209e^-5	0.488	INTRON sim	TF binding site mE1_TFBS_Kr
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	9.256e^-5	0.489	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3R	7000821	3R_7000821_SNP [dm3] 3R_11175099_SNP [dm6]	G	T	9.295e^-5	0.49	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	9.383e^-5	0.491	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	9.383e^-5	0.491	INTERGENIC
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	9.396e^-5	0.491	INTRON salm
3R	9052172	3R_9052172_SNP [dm3] 3R_13226450_SNP [dm6]	T	C	9.425e^-5	0.491	UTR_3_PRIME Ace INTRON Ace
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	9.463e^-5	0.491	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8622699	3R_8622699_SNP [dm3] 3R_12796977_SNP [dm6]	T	C	9.489e^-5	0.491	INTERGENIC
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	9.506e^-5	0.491	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3R	8868681	3R_8868681_SNP [dm3] 3R_13042959_SNP [dm6]	C	T	9.579e^-5	0.491	SYNONYMOUS_CODING CG11670 UPSTREAM snk	TF binding site mE1_TFBS_cad
3R	8889756	3R_8889756_SNP [dm3] 3R_13064034_SNP [dm6]	C	G	9.584e^-5	0.491	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	9.608e^-5	0.491	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13490649	2L_13490649_SNP [dm3] 2L_13490649_SNP [dm6]	A	G	9.609e^-5	0.491	INTRON CG42784
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	9.624e^-5	0.491	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	6574923	3R_6574923_SNP [dm3] 3R_10749201_SNP [dm6]	G	T	9.669e^-5	0.491	INTRON TkR86C
3R	7842215	3R_7842215_SNP [dm3] 3R_12016493_SNP [dm6]	T	A	9.722e^-5	0.492	UPSTREAM Spt3 INTRON CG3313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8337236	3R_8337236_SNP [dm3] 3R_12511514_SNP [dm6]	C	T	9.762e^-5	0.492	DOWNSTREAM Octbeta3R & 1 other INTERGENIC
3R	6564639	3R_6564639_INS [dm3] 3R_10738917_INS [dm6]	T	TAT	9.824e^-5	0.492	INTRON TkR86C	TF binding site mE1_TFBS_cad
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	9.856e^-5	0.492	INTERGENIC
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	9.863e^-5	0.492	INTERGENIC
3L	22842996	3L_22842996_SNP [dm3] 3L_22849896_SNP [dm6]	G	A	9.877e^-5	0.492	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17873011	2R_17873011_SNP [dm3] 2R_21985506_SNP [dm6]	A	G	9.953e^-5	0.492	DOWNSTREAM CG30401 INTERGENIC
2L	14788299	2L_14788299_SNP [dm3] 2L_14788299_SNP [dm6]	A	T	1.001e^-4	0.492	INTERGENIC
2L	11449536	2L_11449536_SNP [dm3] 2L_11449536_SNP [dm6]	A	C	1.001e^-4	0.492	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26035367	3R_26035367_SNP [dm3] 3R_30209645_SNP [dm6]	A	T	1.004e^-4	0.492	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	2040859	2L_2040859_SNP [dm3] 2L_2040859_SNP [dm6]	T	G	1.008e^-4	0.492	NON_SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.009e^-4	0.492	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	507635	2L_507635_SNP [dm3] 2L_507635_SNP [dm6]	A	C	1.010e^-4	0.492	INTRON ush
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	1.012e^-4	0.492	INTRON CG32432
2L	1698340	2L_1698340_SNP [dm3] 2L_1698340_SNP [dm6]	T	A	1.013e^-4	0.492	UTR_3_PRIME chinmo DOWNSTREAM chinmo
3L	7272916	3L_7272916_SNP [dm3] 3L_7279816_SNP [dm6]	G	A	1.014e^-4	0.492	INTRON unc-13-4A
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	1.015e^-4	0.492	INTRON Cad87A
3R	2360122	3R_2360122_DEL [dm3] 3R_6534400_DEL [dm6]	AT	C	1.021e^-4	0.492	INTRON dpr11	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	1.027e^-4	0.492	INTERGENIC
3R	9083125	3R_9083125_DEL [dm3] 3R_13257403_DEL [dm6]	TT	T	1.031e^-4	0.492	INTRON Ace
3R	6573765	3R_6573765_SNP [dm3] 3R_10748043_SNP [dm6]	C	A	1.032e^-4	0.492	INTRON TkR86C
3R	7121612	3R_7121612_SNP [dm3] 3R_11295890_SNP [dm6]	T	A	1.033e^-4	0.492	INTRON CR31386	TF binding site mE1_TFBS_inv
3R	18982340	3R_18982340_SNP [dm3] 3R_23156618_SNP [dm6]	G	T	1.033e^-4	0.492	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	1.035e^-4	0.492	SYNONYMOUS_CODING msps
3R	21013342	3R_21013342_SNP [dm3] 3R_25187620_SNP [dm6]	A	G	1.038e^-4	0.492	INTRON lobo & 1 other
3R	20777628	3R_20777628_SNP [dm3] 3R_24951906_SNP [dm6]	A	T	1.039e^-4	0.492	INTERGENIC
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	1.043e^-4	0.492	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	5121690	X_5121690_INS [dm3] X_5227657_INS [dm6]	C	CC	1.044e^-4	0.492	INTRON CG15465 & 1 other
3R	18982377	3R_18982377_SNP [dm3] 3R_23156655_SNP [dm6]	C	T	1.046e^-4	0.492	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11833828	2L_11833828_SNP [dm3] 2L_11833828_SNP [dm6]	G	A	1.049e^-4	0.492	UPSTREAM CG45011 & 1 other INTRON Pde1c
X	6879881	X_6879881_SNP [dm3] X_6985848_SNP [dm6]	A	G	1.054e^-4	0.492	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	19644413	3L_19644413_SNP [dm3] 3L_19651313_SNP [dm6]	A	G	1.061e^-4	0.492	INTRON tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9607091	3L_9607091_SNP [dm3] 3L_9613991_SNP [dm6]	C	A	1.062e^-4	0.492	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607107	3L_9607107_DEL [dm3] 3L_9614007_DEL [dm6]	TT	T	1.062e^-4	0.492	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	11443884	2L_11443884_DEL [dm3] 2L_11443884_DEL [dm6]	TT	T	1.068e^-4	0.492	INTRON salm
2R	19627755	2R_19627755_SNP [dm3] 2R_23740232_SNP [dm6]	T	C	1.069e^-4	0.492	INTRON egl
3L	3575995	3L_3575995_SNP [dm3] 3L_3575995_SNP [dm6]	C	G	1.072e^-4	0.492	INTRON Eip63E
3R	7044836	3R_7044836_SNP [dm3] 3R_11219114_SNP [dm6]	G	A	1.076e^-4	0.492	NON_SYNONYMOUS_CODING CG6689	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2040763	2L_2040763_SNP [dm3] 2L_2040763_SNP [dm6]	T	C	1.079e^-4	0.492	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11426402	2L_11426402_SNP [dm3] 2L_11426402_SNP [dm6]	G	T	1.079e^-4	0.492	INTERGENIC
2L	11446469	2L_11446469_SNP [dm3] 2L_11446469_SNP [dm6]	G	C	1.081e^-4	0.492	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	7798413	3R_7798413_SNP [dm3] 3R_11972691_SNP [dm6]	C	T	1.087e^-4	0.492	SYNONYMOUS_CODING GC2 DOWNSTREAM Tango9
3R	6844180	3R_6844180_SNP [dm3] 3R_11018458_SNP [dm6]	C	A	1.088e^-4	0.492	INTRON CG34114
3R	9045116	3R_9045116_SNP [dm3] 3R_13219394_SNP [dm6]	T	C	1.090e^-4	0.492	DOWNSTREAM CG8476 INTERGENIC
2L	12115417	2L_12115417_SNP [dm3] 2L_12115417_SNP [dm6]	T	A	1.092e^-4	0.492	INTRON CG17211
3L	16330542	3L_16330542_SNP [dm3] 3L_16337442_SNP [dm6]	G	A	1.096e^-4	0.492	INTERGENIC
3R	8702319	3R_8702319_SNP [dm3] 3R_12876597_SNP [dm6]	G	A	1.098e^-4	0.492	INTERGENIC
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	1.099e^-4	0.492	INTRON Ca-beta
2L	11354595	2L_11354595_SNP [dm3] 2L_11354595_SNP [dm6]	T	A	1.105e^-4	0.492	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3R	8468177	3R_8468177_SNP [dm3] 3R_12642455_SNP [dm6]	G	T	1.106e^-4	0.492	UTR_5_PRIME CG6753	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9607243	3L_9607243_SNP [dm3] 3L_9614143_SNP [dm6]	A	G	1.107e^-4	0.492	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9607256	3L_9607256_SNP [dm3] 3L_9614156_SNP [dm6]	G	T	1.107e^-4	0.492	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	1.113e^-4	0.492	INTRON Indy
2L	11833825	2L_11833825_SNP [dm3] 2L_11833825_SNP [dm6]	C	T	1.115e^-4	0.492	UPSTREAM CG45011 & 1 other INTRON Pde1c
3R	24359734	3R_24359734_SNP [dm3] 3R_28534012_SNP [dm6]	G	T	1.116e^-4	0.492	INTRON Ppn
2L	920108	2L_920108_SNP [dm3] 2L_920108_SNP [dm6]	G	C	1.118e^-4	0.492	INTERGENIC
2L	11429947	2L_11429947_SNP [dm3] 2L_11429947_SNP [dm6]	T	A	1.118e^-4	0.492	INTERGENIC
2L	14960235	2L_14960235_SNP [dm3] 2L_14960235_SNP [dm6]	A	C	1.129e^-4	0.496	INTRON CG42313
3R	8890435	3R_8890435_SNP [dm3] 3R_13064713_SNP [dm6]	C	T	1.135e^-4	0.496	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1590943	3L_1590943_SNP [dm3] 3L_1590943_SNP [dm6]	T	C	1.135e^-4	0.496	INTRON CG13917
3R	8801937	3R_8801937_SNP [dm3] 3R_12976215_SNP [dm6]	G	A	1.148e^-4	0.501	INTRON CG7381
3R	4315830	3R_4315830_SNP [dm3] 3R_8490108_SNP [dm6]	T	C	1.152e^-4	0.501	INTERGENIC
2L	9146166	2L_9146166_SNP [dm3] 2L_9146166_SNP [dm6]	T	C	1.156e^-4	0.502	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12260860	2L_12260860_SNP [dm3] 2L_12260860_SNP [dm6]	G	A	1.158e^-4	0.502	INTRON aret
2L	11429853	2L_11429853_DEL [dm3] 2L_11429853_DEL [dm6]	CC	C	1.161e^-4	0.502	INTERGENIC
2L	11483543	2L_11483543_SNP [dm3] 2L_11483543_SNP [dm6]	T	G	1.165e^-4	0.502	INTERGENIC
2R	14020809	2R_14020809_SNP [dm3] 2R_18133304_SNP [dm6]	A	T	1.166e^-4	0.502	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14197961	2L_14197961_SNP [dm3] 2L_14197961_SNP [dm6]	T	G	1.172e^-4	0.502	UPSTREAM Dyrk2 INTRON Dyrk2
2L	11490748	2L_11490748_SNP [dm3] 2L_11490748_SNP [dm6]	C	T	1.173e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11609424	2R_11609424_DEL [dm3] 2R_15721919_DEL [dm6]	CC	C	1.180e^-4	0.502	INTERGENIC
X	16039920	X_16039920_SNP [dm3] X_16145887_SNP [dm6]	A	G	1.185e^-4	0.502	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2R	9149323	2R_9149323_SNP [dm3] 2R_13261818_SNP [dm6]	G	T	1.188e^-4	0.502	UPSTREAM CG42319 INTRON CG42319
3L	474925	3L_474925_SNP [dm3] 3L_474925_SNP [dm6]	G	T	1.189e^-4	0.502	INTRON klar	TF binding site mE1_TFBS_HSA
2R	14497037	2R_14497037_SNP [dm3] 2R_18609532_SNP [dm6]	T	A	1.193e^-4	0.502	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20607929	2L_20607929_SNP [dm3] 2L_20607929_SNP [dm6]	C	T	1.201e^-4	0.502	UPSTREAM CR43608 INTRON CR44909
3R	27174223	3R_27174223_SNP [dm3] 3R_31348501_SNP [dm6]	T	A	1.201e^-4	0.502	INTRON CG34347	regulatory region REDfly_CRMs
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	1.203e^-4	0.502	INTRON CadN
2L	11465803	2L_11465803_INS [dm3] 2L_11465803_INS [dm6]	A	AA	1.205e^-4	0.502	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	14776417	2L_14776417_SNP [dm3] 2L_14776417_SNP [dm6]	T	C	1.207e^-4	0.502	INTERGENIC
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	1.209e^-4	0.502	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7839484	3R_7839484_SNP [dm3] 3R_12013762_SNP [dm6]	A	C	1.210e^-4	0.502	NON_SYNONYMOUS_CODING GCC185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7490232	3R_7490232_SNP [dm3] 3R_11664510_SNP [dm6]	T	C	1.218e^-4	0.502	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8076578	3R_8076578_SNP [dm3] 3R_12250856_SNP [dm6]	A	G	1.218e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16161351	2L_16161351_SNP [dm3] 2L_16161351_SNP [dm6]	T	C	1.224e^-4	0.502	INTERGENIC
2R	10071218	2R_10071218_SNP [dm3] 2R_14183713_SNP [dm6]	T	A	1.225e^-4	0.502	DOWNSTREAM cg INTERGENIC
2R	14497222	2R_14497222_SNP [dm3] 2R_18609717_SNP [dm6]	G	C	1.225e^-4	0.502	INTRON GEFmeso
3L	5951239	3L_5951239_SNP [dm3] 3L_5958139_SNP [dm6]	C	G	1.227e^-4	0.502	INTERGENIC
2L	15232346	2L_15232346_SNP [dm3] 2L_15232346_SNP [dm6]	G	A	1.229e^-4	0.502	INTRON ZnT35C	TF binding site mE1_TFBS_cad
X	11859573	X_11859573_INS [dm3] X_11965540_INS [dm6]	A	AT	1.229e^-4	0.502	INTRON cac
3R	8503901	3R_8503901_SNP [dm3] 3R_12678179_SNP [dm6]	C	T	1.231e^-4	0.502	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	1.234e^-4	0.502	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2L	14391153	2L_14391153_SNP [dm3] 2L_14391153_SNP [dm6]	T	G	1.235e^-4	0.502	UTR_3_PRIME elB	TF binding site mE1_TFBS_chinmo
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	1.250e^-4	0.507	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3093100	2L_3093100_SNP [dm3] 2L_3093100_SNP [dm6]	C	G	1.252e^-4	0.507	INTRON toc
3L	12476137	3L_12476137_SNP [dm3] 3L_12483037_SNP [dm6]	G	T	1.255e^-4	0.507	INTRON CG10663 & 1 other
3L	2365433	3L_2365433_SNP [dm3] 3L_2365433_SNP [dm6]	T	C	1.257e^-4	0.507	INTERGENIC
X	5611607	X_5611607_SNP [dm3] X_5717574_SNP [dm6]	A	G	1.260e^-4	0.507	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	1.268e^-4	0.507	INTRON CG42260
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	1.269e^-4	0.507	INTRON H2.0
X	20888285	X_20888285_SNP [dm3] X_21017258_SNP [dm6]	A	G	1.269e^-4	0.507	INTERGENIC
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	1.270e^-4	0.507	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8139696	3R_8139696_SNP [dm3] 3R_12313974_SNP [dm6]	G	C	1.273e^-4	0.507	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14787268	2L_14787268_SNP [dm3] 2L_14787268_SNP [dm6]	A	G	1.279e^-4	0.507	INTERGENIC
3R	3185752	3R_3185752_SNP [dm3] 3R_7360030_SNP [dm6]	G	A	1.279e^-4	0.507	INTERGENIC
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	1.292e^-4	0.511	INTRON Cad87A
X	10798126	X_10798126_SNP [dm3] X_10904093_SNP [dm6]	G	A	1.294e^-4	0.511	INTERGENIC
3L	420417	3L_420417_SNP [dm3] 3L_420417_SNP [dm6]	C	T	1.297e^-4	0.511	INTERGENIC
X	5341828	X_5341828_SNP [dm3] X_5447795_SNP [dm6]	C	G	1.304e^-4	0.513	INTRON SPR
3R	6507826	3R_6507826_SNP [dm3] 3R_10682104_SNP [dm6]	T	C	1.310e^-4	0.514	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	1.314e^-4	0.514	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	10920553	2L_10920553_SNP [dm3] 2L_10920553_SNP [dm6]	A	G	1.316e^-4	0.514	INTRON dpr2
3R	7800242	3R_7800242_SNP [dm3] 3R_11974520_SNP [dm6]	T	G	1.319e^-4	0.514	DOWNSTREAM CG10005 INTRON Tango9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	18971619	X_18971619_SNP [dm3] X_19077586_SNP [dm6]	G	A	1.330e^-4	0.515	UPSTREAM CG7406 INTERGENIC
3R	8890531	3R_8890531_SNP [dm3] 3R_13064809_SNP [dm6]	A	T	1.333e^-4	0.515	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1629264	3L_1629264_SNP [dm3] 3L_1629264_SNP [dm6]	G	A	1.333e^-4	0.515	UTR_5_PRIME GC UPSTREAM CG13928	TF binding site mE1_TFBS_chinmo
3R	9116742	3R_9116742_SNP [dm3] 3R_13291020_SNP [dm6]	T	C	1.336e^-4	0.515	NON_SYNONYMOUS_CODING Osi22	TF binding site mE1_TFBS_chinmo
3R	8194980	3R_8194980_SNP [dm3] 3R_12369258_SNP [dm6]	C	T	1.337e^-4	0.515	UTR_5_PRIME GstD1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3548425	3L_3548425_SNP [dm3] 3L_3548425_SNP [dm6]	A	G	1.340e^-4	0.515	INTRON Eip63E
3R	9000985	3R_9000985_SNP [dm3] 3R_13175263_SNP [dm6]	G	A	1.344e^-4	0.515	INTERGENIC
2R	15269110	2R_15269110_SNP [dm3] 2R_19381605_SNP [dm6]	C	A	1.347e^-4	0.515	UPSTREAM CG10073 INTRON CG10073
2R	6081780	2R_6081780_DEL [dm3] 2R_10194275_DEL [dm6]	GG	T	1.348e^-4	0.515	INTERGENIC
3R	6857454	3R_6857454_SNP [dm3] 3R_11031732_SNP [dm6]	C	T	1.349e^-4	0.515	INTRON CG34114
3R	9017493	3R_9017493_DEL [dm3] 3R_13191771_DEL [dm6]	AAACTGCCGA	A	1.356e^-4	0.516		TF binding site BDTNP1_TFBS_twi
X	18350724	X_18350724_SNP [dm3] X_18456691_SNP [dm6]	A	G	1.358e^-4	0.516	INTRON CG32547
3R	8384634	3R_8384634_SNP [dm3] 3R_12558912_SNP [dm6]	A	G	1.359e^-4	0.516	INTRON Octbeta2R
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	1.367e^-4	0.518	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3125136	X_3125136_SNP [dm3] X_3231103_SNP [dm6]	A	G	1.374e^-4	0.519	INTRON dnc
2L	3793871	2L_3793871_SNP [dm3] 2L_3793871_SNP [dm6]	G	A	1.376e^-4	0.519	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	1.382e^-4	0.52	INTRON CR44941
2L	9685763	2L_9685763_SNP [dm3] 2L_9685763_SNP [dm6]	G	A	1.391e^-4	0.521	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11993796	3R_11993796_SNP [dm3] 3R_16168074_SNP [dm6]	C	T	1.393e^-4	0.521	SYNONYMOUS_CODING CG6006 DOWNSTREAM CR43472	TF binding site BDTNP1_TFBS_twi
3L	5914902	3L_5914902_SNP [dm3] 3L_5921802_SNP [dm6]	C	T	1.395e^-4	0.521	UPSTREAM CG32407 & 1 other INTERGENIC
2L	14776864	2L_14776864_SNP [dm3] 2L_14776864_SNP [dm6]	T	A	1.396e^-4	0.521	INTERGENIC
2L	21112099	2L_21112099_SNP [dm3] 2L_21112099_SNP [dm6]	A	G	1.397e^-4	0.521	INTRON Nhe2
3L	5610219	3L_5610219_SNP [dm3] 3L_5617119_SNP [dm6]	T	C	1.403e^-4	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8507405	3R_8507405_SNP [dm3] 3R_12681683_SNP [dm6]	G	T	1.403e^-4	0.521	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
X	19429619	X_19429619_SNP [dm3] X_19535586_SNP [dm6]	T	C	1.411e^-4	0.522	INTRON CG32532
3L	22805088	3L_22805088_SNP [dm3] 3L_22811988_SNP [dm6]	A	G	1.413e^-4	0.522	INTRON jim	transposable element FlyBase
2R	10069592	2R_10069592_SNP [dm3] 2R_14182087_SNP [dm6]	T	C	1.414e^-4	0.522	UTR_3_PRIME cg
X	12013084	X_12013084_SNP [dm3] X_12119051_SNP [dm6]	A	T	1.416e^-4	0.522	INTRON Ten-a
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.419e^-4	0.522	INTRON Octbeta3R
X	5341826	X_5341826_SNP [dm3] X_5447793_SNP [dm6]	G	A	1.425e^-4	0.522	INTRON SPR
3R	23021243	3R_23021243_SNP [dm3] 3R_27195521_SNP [dm6]	C	T	1.427e^-4	0.522	INTERGENIC	regulatory region REDfly_CRMs
2R	11610359	2R_11610359_SNP [dm3] 2R_15722854_SNP [dm6]	C	T	1.428e^-4	0.522	INTERGENIC
3R	8888516	3R_8888516_DEL [dm3] 3R_13062794_DEL [dm6]	TTT	T	1.434e^-4	0.522	INTRON sim
X	7243100	X_7243100_SNP [dm3] X_7349067_SNP [dm6]	C	T	1.437e^-4	0.522	INTRON CR44357 & 1 other
3R	8878828	3R_8878828_DEL [dm3] 3R_13053106_DEL [dm6]	ACCCTG	A	1.437e^-4	0.522	INTRON pic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	9018051	3R_9018051_SNP [dm3] 3R_13192329_SNP [dm6]	G	C	1.450e^-4	0.524	NON_SYNONYMOUS_CODING CG8141
2L	12102713	2L_12102713_SNP [dm3] 2L_12102713_SNP [dm6]	G	C	1.451e^-4	0.524	SYNONYMOUS_CODING Patsas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	8542603	3R_8542603_SNP [dm3] 3R_12716881_SNP [dm6]	A	T	1.452e^-4	0.524	INTRON Men
2L	11466408	2L_11466408_SNP [dm3] 2L_11466408_SNP [dm6]	A	T	1.454e^-4	0.524	INTERGENIC
X	5681225	X_5681225_DEL [dm3] X_5787192_DEL [dm6]	GCTCCCG	G	1.460e^-4	0.525	INTRON CG42699
3L	14560883	3L_14560883_SNP [dm3] 3L_14567783_SNP [dm6]	A	G	1.463e^-4	0.525	NON_SYNONYMOUS_CODING CG42758
2R	5031073	2R_5031073_SNP [dm3] 2R_9143568_SNP [dm6]	C	A	1.466e^-4	0.525	UPSTREAM Prp38 INTRON shrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	14960390	2L_14960390_SNP [dm3] 2L_14960390_SNP [dm6]	C	T	1.480e^-4	0.525	INTRON CG42313
2L	14674970	2L_14674970_SNP [dm3] 2L_14674970_SNP [dm6]	C	T	1.480e^-4	0.525	INTRON osp
2R	11608971	2R_11608971_SNP [dm3] 2R_15721466_SNP [dm6]	C	G	1.480e^-4	0.525	INTERGENIC
2R	11609378	2R_11609378_SNP [dm3] 2R_15721873_SNP [dm6]	C	T	1.480e^-4	0.525	INTERGENIC
2R	11609519	2R_11609519_SNP [dm3] 2R_15722014_SNP [dm6]	G	A	1.480e^-4	0.525	INTERGENIC
2R	5871724	2R_5871724_SNP [dm3] 2R_9984219_SNP [dm6]	G	T	1.481e^-4	0.525	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11426399	2L_11426399_DEL [dm3] 2L_11426399_DEL [dm6]	TT	T	1.485e^-4	0.525	INTERGENIC
2L	9809746	2L_9809746_SNP [dm3] 2L_9809746_SNP [dm6]	G	C	1.490e^-4	0.525	INTRON nAChRalpha6
2L	20838397	2L_20838397_SNP [dm3] 2L_20838397_SNP [dm6]	C	T	1.498e^-4	0.525	UPSTREAM Spn38F INTERGENIC	transposable element FlyBase
2L	19229414	2L_19229414_SNP [dm3] 2L_19229414_SNP [dm6]	C	T	1.498e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
2L	12587961	2L_12587961_DEL [dm3] 2L_12587961_DEL [dm6]	AG	A	1.500e^-4	0.525	UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8538978	3R_8538978_SNP [dm3] 3R_12713256_SNP [dm6]	T	C	1.501e^-4	0.525	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2R	10755270	2R_10755270_SNP [dm3] 2R_14867765_SNP [dm6]	A	T	1.507e^-4	0.525	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9062352	3R_9062352_SNP [dm3] 3R_13236630_SNP [dm6]	A	G	1.507e^-4	0.525	INTRON Ace
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	1.507e^-4	0.525	INTRON dpr10
2L	11406488	2L_11406488_SNP [dm3] 2L_11406488_SNP [dm6]	G	T	1.508e^-4	0.525	INTERGENIC	regulatory region REDfly_CRMs
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	1.511e^-4	0.525	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3L	1592730	3L_1592730_SNP [dm3] 3L_1592730_SNP [dm6]	T	C	1.515e^-4	0.525	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14433910	3L_14433910_SNP [dm3] 3L_14440810_SNP [dm6]	G	A	1.524e^-4	0.527	INTRON bbg
2L	2785394	2L_2785394_SNP [dm3] 2L_2785394_SNP [dm6]	T	A	1.538e^-4	0.531	UTR_3_PRIME Syt1 INTRON Syt1
3R	9057521	3R_9057521_DEL [dm3] 3R_13231799_DEL [dm6]	TCAATGAATATAAATTAAAT...	T	1.543e^-4	0.531	INTRON Ace
2L	7292548	2L_7292548_SNP [dm3] 2L_7292548_SNP [dm6]	C	T	1.543e^-4	0.531	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8122231	3R_8122231_SNP [dm3] 3R_12296509_SNP [dm6]	C	A	1.547e^-4	0.532	DOWNSTREAM svp INTRON svp
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	1.553e^-4	0.532	INTRON Octbeta3R
3R	25649406	3R_25649406_SNP [dm3] 3R_29823684_SNP [dm6]	C	G	1.553e^-4	0.532	INTRON neo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5624828	3L_5624828_SNP [dm3] 3L_5631728_SNP [dm6]	T	C	1.562e^-4	0.533	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8771941	3R_8771941_SNP [dm3] 3R_12946219_SNP [dm6]	G	A	1.564e^-4	0.533	INTERGENIC
X	15210134	X_15210134_SNP [dm3] X_15316101_SNP [dm6]	T	A	1.566e^-4	0.533	INTRON gce EXON CR44961	TF binding site mE1_TFBS_cad
2L	13437672	2L_13437672_SNP [dm3] 2L_13437672_SNP [dm6]	T	A	1.569e^-4	0.533	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2R	6495982	2R_6495982_INS [dm3] 2R_10608477_INS [dm6]	A	ACCCA	1.577e^-4	0.533	INTRON psq
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	1.579e^-4	0.533	INTRON timeout & 2 others
2R	10072435	2R_10072435_SNP [dm3] 2R_14184930_SNP [dm6]	G	A	1.581e^-4	0.533	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21045840	3R_21045840_SNP [dm3] 3R_25220118_SNP [dm6]	G	A	1.582e^-4	0.533	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
2L	14956465	2L_14956465_SNP [dm3] 2L_14956465_SNP [dm6]	C	T	1.582e^-4	0.533	INTRON CG42313
3L	12523866	3L_12523866_SNP [dm3] 3L_12530766_SNP [dm6]	C	G	1.593e^-4	0.536	SYNONYMOUS_CODING Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13482138	2L_13482138_SNP [dm3] 2L_13482138_SNP [dm6]	A	G	1.598e^-4	0.536	INTRON CG42784
X	8276580	X_8276580_DEL [dm3] X_8382547_DEL [dm6]	CAA	C	1.605e^-4	0.537	INTERGENIC
3R	2309436	3R_2309436_SNP [dm3] 3R_6483714_SNP [dm6]	C	A	1.610e^-4	0.537	INTRON CG15186
X	12373177	X_12373177_SNP [dm3] X_12479144_SNP [dm6]	A	G	1.612e^-4	0.537	DOWNSTREAM CG42258 INTERGENIC
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	1.613e^-4	0.537	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	8460032	3R_8460032_SNP [dm3] 3R_12634310_SNP [dm6]	C	T	1.616e^-4	0.537	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
2L	11444484	2L_11444484_SNP [dm3] 2L_11444484_SNP [dm6]	G	C	1.619e^-4	0.537	INTRON salm	TF binding site BDTNP1_TFBS_dl
2L	11490371	2L_11490371_SNP [dm3] 2L_11490371_SNP [dm6]	A	G	1.620e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14773949	2L_14773949_SNP [dm3] 2L_14773949_SNP [dm6]	C	G	1.627e^-4	0.537	NON_SYNONYMOUS_CODING CG4650 UTR_3_PRIME CG4650
3R	9065585	3R_9065585_SNP [dm3] 3R_13239863_SNP [dm6]	T	G	1.630e^-4	0.537	INTRON Ace
2L	3706900	2L_3706900_SNP [dm3] 2L_3706900_SNP [dm6]	C	A	1.631e^-4	0.537	DOWNSTREAM cutlet INTRON CG31777
3R	7776854	3R_7776854_SNP [dm3] 3R_11951132_SNP [dm6]	C	A	1.633e^-4	0.537	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3278138	2L_3278138_SNP [dm3] 2L_3278138_SNP [dm6]	T	A	1.633e^-4	0.537	INTRON CG3332
3L	1597840	3L_1597840_SNP [dm3] 3L_1597840_SNP [dm6]	C	T	1.638e^-4	0.537	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14782790	2L_14782790_SNP [dm3] 2L_14782790_SNP [dm6]	C	T	1.644e^-4	0.538	DOWNSTREAM CG18636 EXON CR15280
2L	9665826	2L_9665826_SNP [dm3] 2L_9665826_SNP [dm6]	T	A	1.651e^-4	0.538	INTERGENIC
2L	11470059	2L_11470059_SNP [dm3] 2L_11470059_SNP [dm6]	G	A	1.653e^-4	0.538	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	262825	2L_262825_SNP [dm3] 2L_262825_SNP [dm6]	C	A	1.654e^-4	0.538	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
2R	14020819	2R_14020819_DEL [dm3] 2R_18133314_DEL [dm6]	CGTTTTA	C	1.655e^-4	0.538	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	12995097	2R_12995097_SNP [dm3] 2R_17107592_SNP [dm6]	A	G	1.663e^-4	0.54	DOWNSTREAM CG30456 INTERGENIC
2L	7210991	2L_7210991_SNP [dm3] 2L_7210991_SNP [dm6]	T	A	1.672e^-4	0.54	INTRON CG13784
X	3012142	X_3012142_SNP [dm3] X_3118109_SNP [dm6]	G	C	1.673e^-4	0.54	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19249905	2R_19249905_SNP [dm3] 2R_23362382_SNP [dm6]	C	T	1.676e^-4	0.54	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8867486	3R_8867486_SNP [dm3] 3R_13041764_SNP [dm6]	A	T	1.678e^-4	0.54	UPSTREAM CG11670 & 1 other INTRON snk
X	12373066	X_12373066_SNP [dm3] X_12479033_SNP [dm6]	G	A	1.681e^-4	0.54	DOWNSTREAM CG42258 INTERGENIC
2L	11926150	2L_11926150_SNP [dm3] 2L_11926150_SNP [dm6]	T	A	1.681e^-4	0.54	INTRON Pde1c
2L	18381170	2L_18381170_SNP [dm3] 2L_18381170_SNP [dm6]	T	C	1.686e^-4	0.54	INTRON Fas3
2L	19251795	2L_19251795_SNP [dm3] 2L_19251795_SNP [dm6]	G	T	1.698e^-4	0.54	INTERGENIC
3L	9081091	3L_9081091_SNP [dm3] 3L_9087991_SNP [dm6]	G	A	1.699e^-4	0.54	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8562772	X_8562772_SNP [dm3] X_8668739_SNP [dm6]	C	T	1.703e^-4	0.54	INTERGENIC
3R	6844216	3R_6844216_SNP [dm3] 3R_11018494_SNP [dm6]	C	A	1.706e^-4	0.54	INTRON CG34114
X	16290036	X_16290036_SNP [dm3] X_16396003_SNP [dm6]	C	T	1.711e^-4	0.54	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2R	19109672	2R_19109672_SNP [dm3] 2R_23222149_SNP [dm6]	G	T	1.716e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2290068	3L_2290068_SNP [dm3] 3L_2290068_SNP [dm6]	A	T	1.720e^-4	0.54	INTRON MsR2
2L	14782806	2L_14782806_SNP [dm3] 2L_14782806_SNP [dm6]	C	A	1.725e^-4	0.54	DOWNSTREAM CG18636 EXON CR15280
3R	9062308	3R_9062308_SNP [dm3] 3R_13236586_SNP [dm6]	G	C	1.728e^-4	0.54	INTRON Ace
3L	1446781	3L_1446781_SNP [dm3] 3L_1446781_SNP [dm6]	C	T	1.728e^-4	0.54	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1446782	3L_1446782_SNP [dm3] 3L_1446782_SNP [dm6]	A	C	1.728e^-4	0.54	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1446784	3L_1446784_DEL [dm3] 3L_1446784_DEL [dm6]	TATTCGTT	G	1.728e^-4	0.54	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	1.729e^-4	0.54	DOWNSTREAM ppk26 INTERGENIC
2L	22435673	2L_22435673_SNP [dm3] 2L_22542941_SNP [dm6]	C	T	1.735e^-4	0.54	INTRON CG17490
3R	7791700	3R_7791700_SNP [dm3] 3R_11965978_SNP [dm6]	G	A	1.739e^-4	0.54	SYNONYMOUS_CODING CG12213	TF binding site mE1_TFBS_cad
3L	1590897	3L_1590897_SNP [dm3] 3L_1590897_SNP [dm6]	T	C	1.749e^-4	0.54	INTRON CG13917
3R	8651597	3R_8651597_DEL [dm3] 3R_12825875_DEL [dm6]	ATTGCTAAT	A	1.751e^-4	0.54	INTERGENIC
3L	8032185	3L_8032185_SNP [dm3] 3L_8039085_SNP [dm6]	G	A	1.752e^-4	0.54	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13746686	2L_13746686_SNP [dm3] 2L_13746686_SNP [dm6]	A	T	1.756e^-4	0.54	UPSTREAM TM9SF4 & 1 other DOWNSTREAM mir-1002 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8459937	3R_8459937_SNP [dm3] 3R_12634215_SNP [dm6]	A	G	1.761e^-4	0.54	UPSTREAM CG11598 INTRON CG18530
3L	9607068	3L_9607068_SNP [dm3] 3L_9613968_SNP [dm6]	T	C	1.764e^-4	0.54	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	1.766e^-4	0.54	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12360832	X_12360832_SNP [dm3] X_12466799_SNP [dm6]	G	T	1.766e^-4	0.54	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11364823	2L_11364823_DEL [dm3] 2L_11364823_DEL [dm6]	CA	C	1.766e^-4	0.54	UPSTREAM salr INTRON salr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12476794	3L_12476794_SNP [dm3] 3L_12483694_SNP [dm6]	C	T	1.769e^-4	0.54	INTRON CG10663 & 1 other
X	6782184	X_6782184_SNP [dm3] X_6888151_SNP [dm6]	T	A	1.772e^-4	0.54	INTERGENIC
2L	9960003	2L_9960003_SNP [dm3] 2L_9960003_SNP [dm6]	T	A	1.776e^-4	0.54	UTR_3_PRIME CG5850 & 1 other DOWNSTREAM CG4658 & 1 other EXON CR44872
2L	11444230	2L_11444230_SNP [dm3] 2L_11444230_SNP [dm6]	C	T	1.776e^-4	0.54	INTRON salm	TF binding site BDTNP1_TFBS_dl
3R	8569347	3R_8569347_SNP [dm3] 3R_12743625_SNP [dm6]	C	A	1.779e^-4	0.54	NON_SYNONYMOUS_CODING CG5999
3L	2571564	3L_2571564_SNP [dm3] 3L_2571564_SNP [dm6]	C	T	1.780e^-4	0.54	INTRON msn
2L	12117522	2L_12117522_SNP [dm3] 2L_12117522_SNP [dm6]	C	T	1.782e^-4	0.54	INTRON CG17211
2L	10886542	2L_10886542_SNP [dm3] 2L_10886542_SNP [dm6]	G	A	1.783e^-4	0.54	INTRON CR44490
3R	8521704	3R_8521704_SNP [dm3] 3R_12695982_SNP [dm6]	T	A	1.790e^-4	0.54	UPSTREAM NijC INTRON NijC
3L	2832984	3L_2832984_SNP [dm3] 3L_2832984_SNP [dm6]	A	T	1.795e^-4	0.54	INTRON CG43444
X	19121397	X_19121397_SNP [dm3] X_19227364_SNP [dm6]	A	T	1.800e^-4	0.54	INTRON CG7884	TF binding site mE1_TFBS_HSA
3L	10115463	3L_10115463_SNP [dm3] 3L_10122363_SNP [dm6]	C	T	1.801e^-4	0.54	INTRON dpr6
3L	14441456	3L_14441456_SNP [dm3] 3L_14448356_SNP [dm6]	G	T	1.801e^-4	0.54	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	1238337	3L_1238337_SNP [dm3] 3L_1238337_SNP [dm6]	A	T	1.805e^-4	0.54	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	11448336	2L_11448336_SNP [dm3] 2L_11448336_SNP [dm6]	G	C	1.811e^-4	0.54	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17123115	3R_17123115_SNP [dm3] 3R_21297393_SNP [dm6]	T	C	1.814e^-4	0.54	INTRON Hsromega EXON Hsromega	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2873429	2L_2873429_SNP [dm3] 2L_2873429_SNP [dm6]	A	C	1.819e^-4	0.54	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2961271	2L_2961271_SNP [dm3] 2L_2961271_SNP [dm6]	A	C	1.826e^-4	0.54	NON_SYNONYMOUS_CODING Rbp9
2L	7401748	2L_7401748_SNP [dm3] 2L_7401748_SNP [dm6]	A	C	1.827e^-4	0.54	INTRON CG5171
2R	17869675	2R_17869675_MNP [dm3] 2R_21982170_MNP [dm6]	TAG	CCA	1.828e^-4	0.54	INTERGENIC
3L	19644482	3L_19644482_SNP [dm3] 3L_19651382_SNP [dm6]	A	G	1.832e^-4	0.54	INTRON tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13145347	3R_13145347_SNP [dm3] 3R_17319625_SNP [dm6]	A	G	1.832e^-4	0.54	DOWNSTREAM beat-IIa INTERGENIC
3R	7800861	3R_7800861_SNP [dm3] 3R_11975139_SNP [dm6]	C	T	1.836e^-4	0.54	UPSTREAM Tango9 DOWNSTREAM CG10005 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9861079	3R_9861079_SNP [dm3] 3R_14035357_SNP [dm6]	A	T	1.838e^-4	0.54	DOWNSTREAM CG3061 INTRON CG9922
2R	5860868	2R_5860868_SNP [dm3] 2R_9973363_SNP [dm6]	A	G	1.846e^-4	0.54	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1827837	3L_1827837_SNP [dm3] 3L_1827837_SNP [dm6]	A	T	1.848e^-4	0.54	INTRON Cpr62Ba
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	1.848e^-4	0.54	INTERGENIC
2L	13437667	2L_13437667_SNP [dm3] 2L_13437667_SNP [dm6]	A	T	1.855e^-4	0.54	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	13492264	2L_13492264_SNP [dm3] 2L_13492264_SNP [dm6]	A	G	1.857e^-4	0.54	INTRON CG42784
3R	8983024	3R_8983024_SNP [dm3] 3R_13157302_SNP [dm6]	T	C	1.862e^-4	0.54	INTRON timeout
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.862e^-4	0.54	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2R	14662062	2R_14662062_SNP [dm3] 2R_18774557_SNP [dm6]	G	A	1.864e^-4	0.54	UTR_3_PRIME Mctp UPSTREAM CR43964
3R	8255297	3R_8255297_SNP [dm3] 3R_12429575_SNP [dm6]	C	G	1.868e^-4	0.54	UTR_5_PRIME CG5245 UPSTREAM CG5641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	9222985	3L_9222985_SNP [dm3] 3L_9229885_SNP [dm6]	T	C	1.871e^-4	0.54	INTERGENIC
2L	4081680	2L_4081680_SNP [dm3] 2L_4081680_SNP [dm6]	T	A	1.874e^-4	0.54	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3840529	2R_3840529_SNP [dm3] 2R_7953024_SNP [dm6]	A	C	1.875e^-4	0.54	INTRON CG14764
3R	8946785	3R_8946785_SNP [dm3] 3R_13121063_SNP [dm6]	C	T	1.878e^-4	0.54	DOWNSTREAM 2mit INTRON timeout
3R	9060173	3R_9060173_SNP [dm3] 3R_13234451_SNP [dm6]	G	A	1.878e^-4	0.54	INTRON Ace
2L	11470007	2L_11470007_SNP [dm3] 2L_11470007_SNP [dm6]	A	G	1.880e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6321073	X_6321073_SNP [dm3] X_6427040_SNP [dm6]	A	G	1.881e^-4	0.54	INTRON CG42340
3L	2914899	3L_2914899_SNP [dm3] 3L_2914899_SNP [dm6]	G	A	1.885e^-4	0.54	DOWNSTREAM CG9970 INTRON Shab
3L	18299528	3L_18299528_SNP [dm3] 3L_18306428_SNP [dm6]	C	A	1.885e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16045029	2L_16045029_SNP [dm3] 2L_16045029_SNP [dm6]	T	G	1.891e^-4	0.54	INTRON BicC & 1 other
2L	7448188	2L_7448188_SNP [dm3] 2L_7448188_SNP [dm6]	G	A	1.895e^-4	0.54	UTR_5_PRIME santa-maria INTRON santa-maria
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	1.896e^-4	0.54	INTRON NaPi-T
3R	8893050	3R_8893050_SNP [dm3] 3R_13067328_SNP [dm6]	C	T	1.901e^-4	0.54	INTRON sim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	1.906e^-4	0.54	DOWNSTREAM CG15483 INTERGENIC
2L	11444979	2L_11444979_SNP [dm3] 2L_11444979_SNP [dm6]	T	C	1.906e^-4	0.54	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11444994	2L_11444994_SNP [dm3] 2L_11444994_SNP [dm6]	C	G	1.906e^-4	0.54	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	1.908e^-4	0.54	INTRON CG14395
3L	1597209	3L_1597209_SNP [dm3] 3L_1597209_SNP [dm6]	C	T	1.909e^-4	0.54	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11696208	2L_11696208_SNP [dm3] 2L_11696208_SNP [dm6]	T	A	1.909e^-4	0.54	DOWNSTREAM CG4988 INTERGENIC
3R	9024585	3R_9024585_SNP [dm3] 3R_13198863_SNP [dm6]	C	T	1.911e^-4	0.54	INTERGENIC
2L	9665843	2L_9665843_SNP [dm3] 2L_9665843_SNP [dm6]	A	G	1.916e^-4	0.54	INTERGENIC
3R	9048628	3R_9048628_SNP [dm3] 3R_13222906_SNP [dm6]	A	G	1.919e^-4	0.54	DOWNSTREAM Ace INTERGENIC
3L	3802410	3L_3802410_SNP [dm3] 3L_3802410_SNP [dm6]	G	T	1.921e^-4	0.54	INTRON CG32264
X	8562820	X_8562820_SNP [dm3] X_8668787_SNP [dm6]	A	C	1.923e^-4	0.54	INTERGENIC
3R	8538954	3R_8538954_SNP [dm3] 3R_12713232_SNP [dm6]	A	C	1.930e^-4	0.54	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2L	12115945	2L_12115945_SNP [dm3] 2L_12115945_SNP [dm6]	G	A	1.930e^-4	0.54	INTRON CG17211
3R	8543650	3R_8543650_SNP [dm3] 3R_12717928_SNP [dm6]	T	G	1.934e^-4	0.54	INTRON Men
3R	8370522	3R_8370522_SNP [dm3] 3R_12544800_SNP [dm6]	C	T	1.939e^-4	0.54	INTRON Octbeta3R
3R	8779739	3R_8779739_SNP [dm3] 3R_12954017_SNP [dm6]	G	A	1.942e^-4	0.54	INTRON grsm
2R	5038366	2R_5038366_SNP [dm3] 2R_9150861_SNP [dm6]	C	G	1.947e^-4	0.54	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
3R	9721734	3R_9721734_SNP [dm3] 3R_13896012_SNP [dm6]	A	C	1.948e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16115423	2R_16115423_DEL [dm3] 2R_20227918_DEL [dm6]	TTC	G	1.949e^-4	0.54	INTERGENIC
3R	8138043	3R_8138043_SNP [dm3] 3R_12312321_SNP [dm6]	C	T	1.956e^-4	0.54	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	1.958e^-4	0.54	INTERGENIC
2L	17696497	2L_17696497_SNP [dm3] 2L_17696497_SNP [dm6]	C	T	1.959e^-4	0.54	INTRON CadN
2R	16720780	2R_16720780_SNP [dm3] 2R_20833275_SNP [dm6]	G	A	1.961e^-4	0.54	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8890538	3R_8890538_DEL [dm3] 3R_13064816_DEL [dm6]	CT	C	1.967e^-4	0.54	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	11302595	2L_11302595_SNP [dm3] 2L_11302595_SNP [dm6]	T	G	1.969e^-4	0.54	INTERGENIC
2L	11302597	2L_11302597_SNP [dm3] 2L_11302597_SNP [dm6]	G	A	1.969e^-4	0.54	INTERGENIC
2L	14956753	2L_14956753_SNP [dm3] 2L_14956753_SNP [dm6]	G	T	1.975e^-4	0.54	INTRON CG42313
X	10432320	X_10432320_SNP [dm3] X_10538287_SNP [dm6]	C	T	1.978e^-4	0.54	INTRON spri	TF binding site BDTNP1_TFBS_da
2L	11698081	2L_11698081_SNP [dm3] 2L_11698081_SNP [dm6]	G	C	1.980e^-4	0.54	INTERGENIC
3R	8890440	3R_8890440_SNP [dm3] 3R_13064718_SNP [dm6]	A	G	1.985e^-4	0.54	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	1.989e^-4	0.54	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
2L	3793817	2L_3793817_SNP [dm3] 2L_3793817_SNP [dm6]	A	T	1.990e^-4	0.54	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8995888	3R_8995888_SNP [dm3] 3R_13170166_SNP [dm6]	G	T	1.990e^-4	0.54	INTERGENIC
3L	19171274	3L_19171274_INS [dm3] 3L_19178174_INS [dm6]	C	CC	1.991e^-4	0.54	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12010094	3L_12010094_SNP [dm3] 3L_12016994_SNP [dm6]	A	G	1.991e^-4	0.54	INTRON rols
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.993e^-4	0.54	INTRON 4EHP
3R	7741034	3R_7741034_DEL [dm3] 3R_11915312_DEL [dm6]	GT	G	1.997e^-4	0.54	INTRON Cad87A
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	1.998e^-4	0.54	EXON CR43404
2L	3093368	2L_3093368_SNP [dm3] 2L_3093368_SNP [dm6]	T	A	1.999e^-4	0.54	INTRON toc
3R	15103393	3R_15103393_SNP [dm3] 3R_19277671_SNP [dm6]	A	T	2.003e^-4	0.54	INTERGENIC
3R	8209974	3R_8209974_SNP [dm3] 3R_12384252_SNP [dm6]	T	A	2.008e^-4	0.54	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	255379	2L_255379_SNP [dm3] 2L_255379_SNP [dm6]	G	A	2.012e^-4	0.54	UPSTREAM CG3645 INTRON CG3645
3R	8477900	3R_8477900_SNP [dm3] 3R_12652178_SNP [dm6]	C	A	2.020e^-4	0.54	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	7844127	3R_7844127_SNP [dm3] 3R_12018405_SNP [dm6]	C	A	2.025e^-4	0.54	UTR_3_PRIME Spt3	TF binding site mE1_TFBS_chinmo
2R	18462480	2R_18462480_DEL [dm3] 2R_22574975_DEL [dm6]	CC	C	2.027e^-4	0.54	INTRON dnr1
3R	22941877	3R_22941877_SNP [dm3] 3R_27116155_SNP [dm6]	A	G	2.034e^-4	0.54	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18982407	3R_18982407_SNP [dm3] 3R_23156685_SNP [dm6]	A	T	2.044e^-4	0.54	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16697525	2R_16697525_SNP [dm3] 2R_20810020_SNP [dm6]	T	C	2.045e^-4	0.54	INTERGENIC
3R	8460216	3R_8460216_SNP [dm3] 3R_12634494_SNP [dm6]	A	G	2.049e^-4	0.54	NON_SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
X	10903951	X_10903951_SNP [dm3] X_11009918_SNP [dm6]	A	G	2.049e^-4	0.54	INTRON CG42339
3L	11653081	3L_11653081_DEL [dm3] 3L_11659981_DEL [dm6]	AGAGAAGACTGTTTGATTAG...	A	2.050e^-4	0.54	INTRON CG32085
2L	16161392	2L_16161392_SNP [dm3] 2L_16161392_SNP [dm6]	G	T	2.051e^-4	0.54	INTERGENIC
2L	14956595	2L_14956595_SNP [dm3] 2L_14956595_SNP [dm6]	T	G	2.060e^-4	0.54	INTRON CG42313
3R	7026951	3R_7026951_SNP [dm3] 3R_11201229_SNP [dm6]	C	A	2.061e^-4	0.54	INTRON cu
2L	11435906	2L_11435906_SNP [dm3] 2L_11435906_SNP [dm6]	C	T	2.062e^-4	0.54	NON_SYNONYMOUS_CODING salm UTR_3_PRIME salm	TF binding site BDTNP1_TFBS_twi
3R	3167412	3R_3167412_SNP [dm3] 3R_7341690_SNP [dm6]	A	G	2.069e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 transposable element FlyBase
3L	9995578	3L_9995578_DEL [dm3] 3L_10002478_DEL [dm6]	CA	C	2.079e^-4	0.54	INTRON dpr6
3R	18064574	3R_18064574_DEL [dm3] 3R_22238852_DEL [dm6]	CC	G	2.080e^-4	0.54	INTRON SKIP
3L	1868869	3L_1868869_INS [dm3] 3L_1868869_INS [dm6]	T	TT	2.081e^-4	0.54	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	7210988	2L_7210988_SNP [dm3] 2L_7210988_SNP [dm6]	A	G	2.091e^-4	0.54	INTRON CG13784
2L	11439185	2L_11439185_SNP [dm3] 2L_11439185_SNP [dm6]	A	G	2.091e^-4	0.54	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	2.092e^-4	0.54	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7133756	3R_7133756_SNP [dm3] 3R_11308034_SNP [dm6]	G	T	2.092e^-4	0.54	INTERGENIC
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	2.092e^-4	0.54	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	14956483	2L_14956483_SNP [dm3] 2L_14956483_SNP [dm6]	G	A	2.093e^-4	0.54	INTRON CG42313
2L	14300613	2L_14300613_SNP [dm3] 2L_14300613_SNP [dm6]	A	G	2.098e^-4	0.54	UPSTREAM wb INTRON wb	TF binding site mE1_TFBS_Trl
3L	11679537	3L_11679537_SNP [dm3] 3L_11686437_SNP [dm6]	G	A	2.100e^-4	0.54	INTRON Sug
3R	8567206	3R_8567206_SNP [dm3] 3R_12741484_SNP [dm6]	A	T	2.105e^-4	0.54	DOWNSTREAM CG5999 & 1 other INTERGENIC
2L	11701285	2L_11701285_SNP [dm3] 2L_11701285_SNP [dm6]	T	C	2.105e^-4	0.54	INTERGENIC
3L	11653123	3L_11653123_SNP [dm3] 3L_11660023_SNP [dm6]	A	C	2.107e^-4	0.54	INTRON CG32085
3R	7131983	3R_7131983_DEL [dm3] 3R_11306261_DEL [dm6]	AA	A	2.108e^-4	0.54	UPSTREAM CR31386 INTERGENIC
X	16039960	X_16039960_SNP [dm3] X_16145927_SNP [dm6]	T	G	2.112e^-4	0.54	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3L	14573513	3L_14573513_SNP [dm3] 3L_14580413_SNP [dm6]	G	T	2.113e^-4	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9955610	X_9955610_SNP [dm3] X_10061577_SNP [dm6]	T	G	2.114e^-4	0.54	UPSTREAM Gr9a INTRON CG15312
2L	11454165	2L_11454165_SNP [dm3] 2L_11454165_SNP [dm6]	A	G	2.114e^-4	0.54	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	6879912	X_6879912_SNP [dm3] X_6985879_SNP [dm6]	G	A	2.114e^-4	0.54	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	923964	3L_923964_SNP [dm3] 3L_923964_SNP [dm6]	G	A	2.115e^-4	0.54	INTRON Glut1
2L	3567628	2L_3567628_SNP [dm3] 2L_3567628_SNP [dm6]	G	T	2.116e^-4	0.54	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19406368	2L_19406368_SNP [dm3] 2L_19406368_SNP [dm6]	C	G	2.118e^-4	0.54	INTRON Pax
X	17100970	X_17100970_INS [dm3] X_17206937_INS [dm6]	A	AGTGCCA	2.119e^-4	0.54		TF binding site mE1_TFBS_chinmo
3R	8782225	3R_8782225_SNP [dm3] 3R_12956503_SNP [dm6]	A	G	2.120e^-4	0.54	INTRON grsm
3R	8741405	3R_8741405_SNP [dm3] 3R_12915683_SNP [dm6]	A	G	2.122e^-4	0.54	UPSTREAM beat-Vb INTERGENIC
2L	494691	2L_494691_SNP [dm3] 2L_494691_SNP [dm6]	A	T	2.128e^-4	0.54	INTRON ush
3L	8473686	3L_8473686_SNP [dm3] 3L_8480586_SNP [dm6]	G	A	2.128e^-4	0.54	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	16977874	3L_16977874_SNP [dm3] 3L_16984774_SNP [dm6]	C	A	2.134e^-4	0.541	INTRON Exn
3R	18982406	3R_18982406_SNP [dm3] 3R_23156684_SNP [dm6]	A	T	2.141e^-4	0.541	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	8374182	3R_8374182_SNP [dm3] 3R_12548460_SNP [dm6]	C	T	2.143e^-4	0.541	UPSTREAM Octbeta3R INTERGENIC
2L	7266308	2L_7266308_SNP [dm3] 2L_7266308_SNP [dm6]	A	G	2.144e^-4	0.541	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
3R	26454700	3R_26454700_SNP [dm3] 3R_30628978_SNP [dm6]	T	C	2.154e^-4	0.543	UTR_5_PRIME CG2267
3R	16899149	3R_16899149_SNP [dm3] 3R_21073427_SNP [dm6]	C	T	2.160e^-4	0.543	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	5411648	3R_5411648_SNP [dm3] 3R_9585926_SNP [dm6]	C	T	2.162e^-4	0.543	INTRON CG8301
2L	21764585	2L_21764585_SNP [dm3] 2L_21764585_SNP [dm6]	G	A	2.165e^-4	0.544	INTRON CG31612
2R	19611990	2R_19611990_SNP [dm3] 2R_23724467_SNP [dm6]	A	G	2.171e^-4	0.544	INTRON Sesn
3L	14205797	3L_14205797_SNP [dm3] 3L_14212697_SNP [dm6]	A	T	2.175e^-4	0.544	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	18829780	3L_18829780_SNP [dm3] 3L_18836680_SNP [dm6]	A	T	2.176e^-4	0.544	INTRON Indy	TF binding site mE1_TFBS_zfh1
X	8465172	X_8465172_SNP [dm3] X_8571139_SNP [dm6]	C	T	2.176e^-4	0.544	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
X	10431632	X_10431632_SNP [dm3] X_10537599_SNP [dm6]	A	G	2.181e^-4	0.544	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8542604	3R_8542604_SNP [dm3] 3R_12716882_SNP [dm6]	A	C	2.183e^-4	0.544	INTRON Men
3R	8867779	3R_8867779_SNP [dm3] 3R_13042057_SNP [dm6]	G	T	2.188e^-4	0.544	START_GAINED CG11670 UTR_5_PRIME CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad
3L	9607230	3L_9607230_SNP [dm3] 3L_9614130_SNP [dm6]	G	A	2.195e^-4	0.545	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	6020395	3L_6020395_SNP [dm3] 3L_6027295_SNP [dm6]	A	G	2.197e^-4	0.545	DOWNSTREAM PVRAP INTERGENIC
2L	11437787	2L_11437787_SNP [dm3] 2L_11437787_SNP [dm6]	A	T	2.203e^-4	0.545	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16330549	3L_16330549_SNP [dm3] 3L_16337449_SNP [dm6]	A	T	2.203e^-4	0.545	INTERGENIC
2L	10008502	2L_10008502_SNP [dm3] 2L_10008502_SNP [dm6]	A	C	2.204e^-4	0.545	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2L	11490344	2L_11490344_SNP [dm3] 2L_11490344_SNP [dm6]	G	A	2.210e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8888028	3R_8888028_SNP [dm3] 3R_13062306_SNP [dm6]	G	A	2.212e^-4	0.545	UPSTREAM sim INTRON sim
X	6383915	X_6383915_SNP [dm3] X_6489882_SNP [dm6]	T	C	2.218e^-4	0.545	INTRON CG42340
2L	11468222	2L_11468222_SNP [dm3] 2L_11468222_SNP [dm6]	G	C	2.218e^-4	0.545	INTERGENIC
2L	15854798	2L_15854798_SNP [dm3] 2L_15854798_SNP [dm6]	C	T	2.223e^-4	0.546	DOWNSTREAM CG13243 INTRON Tektin-A
2L	14694033	2L_14694033_SNP [dm3] 2L_14694033_SNP [dm6]	G	C	2.228e^-4	0.546	INTERGENIC
3R	26068206	3R_26068206_SNP [dm3] 3R_30242484_SNP [dm6]	T	C	2.231e^-4	0.546	INTRON CG9737
3R	22031411	3R_22031411_SNP [dm3] 3R_26205689_SNP [dm6]	G	C	2.233e^-4	0.546	INTRON CR44320
2R	20569061	2R_20569061_SNP [dm3] 2R_24681538_SNP [dm6]	G	A	2.247e^-4	0.546	INTRON Mmp1
2L	11443950	2L_11443950_SNP [dm3] 2L_11443950_SNP [dm6]	G	T	2.248e^-4	0.546	INTRON salm
2L	4264349	2L_4264349_SNP [dm3] 2L_4264349_SNP [dm6]	T	G	2.249e^-4	0.546	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7210981	2L_7210981_SNP [dm3] 2L_7210981_SNP [dm6]	C	T	2.251e^-4	0.546	INTRON CG13784
3R	8877410	3R_8877410_SNP [dm3] 3R_13051688_SNP [dm6]	G	A	2.252e^-4	0.546	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	5202794	3R_5202794_SNP [dm3] 3R_9377072_SNP [dm6]	A	C	2.252e^-4	0.546	INTRON FER	TF binding site BDTNP1_TFBS_twi
3R	6858443	3R_6858443_SNP [dm3] 3R_11032721_SNP [dm6]	G	A	2.265e^-4	0.549	INTRON CG34114
3R	9024626	3R_9024626_SNP [dm3] 3R_13198904_SNP [dm6]	T	A	2.271e^-4	0.549	INTERGENIC
3R	9066968	3R_9066968_SNP [dm3] 3R_13241246_SNP [dm6]	G	A	2.276e^-4	0.549	INTRON Ace
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	2.277e^-4	0.549	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9607218	3L_9607218_SNP [dm3] 3L_9614118_SNP [dm6]	A	T	2.279e^-4	0.549	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	16330711	3L_16330711_SNP [dm3] 3L_16337611_SNP [dm6]	T	C	2.283e^-4	0.55	INTERGENIC
2L	19070373	2L_19070373_SNP [dm3] 2L_19070373_SNP [dm6]	T	C	2.292e^-4	0.55	UPSTREAM CG10702 DOWNSTREAM CG17343 & 1 other INTERGENIC
3R	8361127	3R_8361127_SNP [dm3] 3R_12535405_SNP [dm6]	A	G	2.294e^-4	0.55	INTRON Octbeta3R
3R	8884745	3R_8884745_SNP [dm3] 3R_13059023_SNP [dm6]	G	T	2.297e^-4	0.55	INTRON sim	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	5715696	2R_5715696_SNP [dm3] 2R_9828191_SNP [dm6]	T	A	2.298e^-4	0.55	UTR_3_PRIME hebe UPSTREAM dila
3R	8562776	3R_8562776_SNP [dm3] 3R_12737054_SNP [dm6]	C	T	2.302e^-4	0.55	INTERGENIC
3L	5645415	3L_5645415_SNP [dm3] 3L_5652315_SNP [dm6]	C	T	2.305e^-4	0.55	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	2.307e^-4	0.55	INTRON hoe1
2R	16521148	2R_16521148_SNP [dm3] 2R_20633643_SNP [dm6]	G	A	2.311e^-4	0.55	UPSTREAM Rcd6 DOWNSTREAM rig INTERGENIC
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	2.318e^-4	0.55	DOWNSTREAM CR32027 INTRON Indy
2L	5169440	2L_5169440_SNP [dm3] 2L_5169440_SNP [dm6]	T	C	2.318e^-4	0.55	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	9999471	3R_9999471_SNP [dm3] 3R_14173749_SNP [dm6]	G	T	2.319e^-4	0.55	UTR_3_PRIME Dop1R1
3R	8232862	3R_8232862_SNP [dm3] 3R_12407140_SNP [dm6]	C	T	2.319e^-4	0.55	SYNONYMOUS_CODING CG5167	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11435285	2L_11435285_SNP [dm3] 2L_11435285_SNP [dm6]	A	G	2.321e^-4	0.55	UTR_3_PRIME salm
3R	10815239	3R_10815239_SNP [dm3] 3R_14989517_SNP [dm6]	G	C	2.325e^-4	0.55	INTERGENIC
2L	12116476	2L_12116476_SNP [dm3] 2L_12116476_SNP [dm6]	G	A	2.331e^-4	0.551	INTRON CG17211
3L	16330550	3L_16330550_SNP [dm3] 3L_16337450_SNP [dm6]	A	G	2.336e^-4	0.551	INTERGENIC
2L	11446056	2L_11446056_SNP [dm3] 2L_11446056_SNP [dm6]	A	G	2.339e^-4	0.551	UPSTREAM salm INTERGENIC	regulatory region FlyBase silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6848243	3R_6848243_INS [dm3] 3R_11022521_INS [dm6]	A	AAC	2.346e^-4	0.551	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	4715667	2L_4715667_SNP [dm3] 2L_4715667_SNP [dm6]	C	T	2.346e^-4	0.551	INTRON CG34351
3R	21045832	3R_21045832_SNP [dm3] 3R_25220110_SNP [dm6]	C	T	2.352e^-4	0.551	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3R	2352982	3R_2352982_SNP [dm3] 3R_6527260_SNP [dm6]	G	T	2.355e^-4	0.551	UPSTREAM CG15185 INTERGENIC
2L	1185253	2L_1185253_SNP [dm3] 2L_1185253_SNP [dm6]	A	C	2.356e^-4	0.551	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12825493	2R_12825493_SNP [dm3] 2R_16937988_SNP [dm6]	T	A	2.357e^-4	0.551	UTR_3_PRIME CG43788 UPSTREAM CG43789 INTRON Pkc53E
2L	11433432	2L_11433432_SNP [dm3] 2L_11433432_SNP [dm6]	G	A	2.358e^-4	0.551	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18419308	3L_18419308_SNP [dm3] 3L_18426208_SNP [dm6]	A	G	2.369e^-4	0.552	INTERGENIC
2L	14960241	2L_14960241_SNP [dm3] 2L_14960241_SNP [dm6]	C	A	2.385e^-4	0.552	INTRON CG42313
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	2.386e^-4	0.552	UTR_3_PRIME plum
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	2.391e^-4	0.552	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3R	9108703	3R_9108703_SNP [dm3] 3R_13282981_SNP [dm6]	T	C	2.392e^-4	0.552	SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15104540	3R_15104540_SNP [dm3] 3R_19278818_SNP [dm6]	C	T	2.392e^-4	0.552	EXON CR44173
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	2.393e^-4	0.552	INTERGENIC
3L	9807193	3L_9807193_SNP [dm3] 3L_9814093_SNP [dm6]	A	C	2.396e^-4	0.552	INTRON CG43897
2L	11439179	2L_11439179_SNP [dm3] 2L_11439179_SNP [dm6]	G	A	2.400e^-4	0.552	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10032166	2L_10032166_SNP [dm3] 2L_10032166_SNP [dm6]	C	A	2.401e^-4	0.552	UPSTREAM obst-B INTERGENIC
2R	5793982	2R_5793982_SNP [dm3] 2R_9906477_SNP [dm6]	C	T	2.407e^-4	0.552	INTRON FMRFa
3R	8888492	3R_8888492_SNP [dm3] 3R_13062770_SNP [dm6]	G	A	2.412e^-4	0.552	INTRON sim
3L	18832590	3L_18832590_SNP [dm3] 3L_18839490_SNP [dm6]	T	C	2.413e^-4	0.552	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	2.415e^-4	0.552	INTRON Indy
3R	13087936	3R_13087936_SNP [dm3] 3R_17262214_SNP [dm6]	A	G	2.417e^-4	0.552	INTRON beat-IIb
3R	8384611	3R_8384611_SNP [dm3] 3R_12558889_SNP [dm6]	C	T	2.417e^-4	0.552	INTRON Octbeta2R
3R	8807786	3R_8807786_SNP [dm3] 3R_12982064_SNP [dm6]	C	T	2.422e^-4	0.552	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1590899	3L_1590899_SNP [dm3] 3L_1590899_SNP [dm6]	T	A	2.427e^-4	0.552	INTRON CG13917
2L	11363844	2L_11363844_SNP [dm3] 2L_11363844_SNP [dm6]	C	T	2.434e^-4	0.552	INTRON salr	TF binding site mE1_TFBS_HSA
3R	7749508	3R_7749508_SNP [dm3] 3R_11923786_SNP [dm6]	A	G	2.435e^-4	0.552	INTRON Cad87A
3L	18132128	3L_18132128_SNP [dm3] 3L_18139028_SNP [dm6]	C	T	2.435e^-4	0.552	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7029931	3L_7029931_SNP [dm3] 3L_7036831_SNP [dm6]	T	C	2.441e^-4	0.552	INTRON Mp
2L	18276266	2L_18276266_SNP [dm3] 2L_18276266_SNP [dm6]	T	A	2.441e^-4	0.552	UPSTREAM CG42750 INTERGENIC
X	17374068	X_17374068_SNP [dm3] X_17480035_SNP [dm6]	C	T	2.442e^-4	0.552	INTRON CG43658
2L	11428826	2L_11428826_SNP [dm3] 2L_11428826_SNP [dm6]	C	T	2.443e^-4	0.552	INTERGENIC
2R	10708168	2R_10708168_SNP [dm3] 2R_14820663_SNP [dm6]	C	A	2.446e^-4	0.552	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	25600208	3R_25600208_INS [dm3] 3R_29774486_INS [dm6]	G	GG	2.448e^-4	0.552	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	2.448e^-4	0.552	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
3R	8460221	3R_8460221_SNP [dm3] 3R_12634499_SNP [dm6]	T	C	2.451e^-4	0.552	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
2L	13437684	2L_13437684_SNP [dm3] 2L_13437684_SNP [dm6]	A	G	2.453e^-4	0.552	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	11192942	2L_11192942_SNP [dm3] 2L_11192942_SNP [dm6]	A	G	2.459e^-4	0.553	INTRON Ca-beta
3L	1283196	3L_1283196_SNP [dm3] 3L_1283196_SNP [dm6]	C	A	2.461e^-4	0.553	INTRON CG32333
2L	16045036	2L_16045036_SNP [dm3] 2L_16045036_SNP [dm6]	T	G	2.463e^-4	0.553	INTRON BicC & 1 other
2R	18696731	2R_18696731_SNP [dm3] 2R_22809226_SNP [dm6]	T	A	2.479e^-4	0.553	INTRON stl	TF binding site BDTNP1_TFBS_twi
2L	13730030	2L_13730030_INS [dm3] 2L_13730030_INS [dm6]	A	ATACACACA	2.481e^-4	0.553	INTERGENIC
3L	16330519	3L_16330519_SNP [dm3] 3L_16337419_SNP [dm6]	T	A	2.482e^-4	0.553	INTERGENIC
3R	8384670	3R_8384670_SNP [dm3] 3R_12558948_SNP [dm6]	T	A	2.485e^-4	0.553	INTRON Octbeta2R
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	2.486e^-4	0.553	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	14674902	2L_14674902_SNP [dm3] 2L_14674902_SNP [dm6]	C	T	2.491e^-4	0.553	INTRON osp
X	11343320	X_11343320_SNP [dm3] X_11449287_SNP [dm6]	T	C	2.492e^-4	0.553	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11417684	2L_11417684_SNP [dm3] 2L_11417684_SNP [dm6]	C	T	2.493e^-4	0.553	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9100401	3R_9100401_SNP [dm3] 3R_13274679_SNP [dm6]	T	A	2.494e^-4	0.553	INTERGENIC
2L	9982694	2L_9982694_SNP [dm3] 2L_9982694_SNP [dm6]	C	A	2.497e^-4	0.553	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
3R	7745581	3R_7745581_SNP [dm3] 3R_11919859_SNP [dm6]	G	A	2.501e^-4	0.553	INTRON Cad87A
3L	11319371	3L_11319371_SNP [dm3] 3L_11326271_SNP [dm6]	A	C	2.505e^-4	0.553	INTERGENIC
3L	21585588	3L_21585588_INS [dm3] 3L_21592488_INS [dm6]	A	AACCACCTAGCCACCTA...	2.505e^-4	0.553	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8208678	3R_8208678_SNP [dm3] 3R_12382956_SNP [dm6]	G	C	2.506e^-4	0.553	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4238286	2L_4238286_SNP [dm3] 2L_4238286_SNP [dm6]	T	A	2.512e^-4	0.553	INTERGENIC
3R	8612466	3R_8612466_SNP [dm3] 3R_12786744_SNP [dm6]	T	G	2.513e^-4	0.553	INTERGENIC
2L	9364937	2L_9364937_SNP [dm3] 2L_9364937_SNP [dm6]	C	A	2.518e^-4	0.553	EXON CR43404
3R	8883018	3R_8883018_SNP [dm3] 3R_13057296_SNP [dm6]	T	C	2.520e^-4	0.553	UPSTREAM sim DOWNSTREAM pic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18974847	3R_18974847_SNP [dm3] 3R_23149125_SNP [dm6]	T	C	2.523e^-4	0.553	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11447721	2L_11447721_SNP [dm3] 2L_11447721_SNP [dm6]	A	T	2.523e^-4	0.553	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9364916	2L_9364916_SNP [dm3] 2L_9364916_SNP [dm6]	G	C	2.535e^-4	0.555	EXON CR43404
3R	9207038	3R_9207038_SNP [dm3] 3R_13381316_SNP [dm6]	C	A	2.541e^-4	0.555	NON_SYNONYMOUS_CODING CG8870 UTR_3_PRIME mRpS21 UPSTREAM Droj2 DOWNSTREAM mRpS21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2R	10581851	2R_10581851_SNP [dm3] 2R_14694346_SNP [dm6]	G	C	2.546e^-4	0.556	INTRON mspo
2R	19240878	2R_19240878_SNP [dm3] 2R_23353355_SNP [dm6]	G	A	2.551e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8649522	3R_8649522_SNP [dm3] 3R_12823800_SNP [dm6]	G	T	2.558e^-4	0.556	INTERGENIC
3R	8890432	3R_8890432_SNP [dm3] 3R_13064710_SNP [dm6]	T	A	2.559e^-4	0.556	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	2.562e^-4	0.556	INTERGENIC	regulatory region REDfly_CRMs
3L	8651298	3L_8651298_SNP [dm3] 3L_8658198_SNP [dm6]	A	G	2.564e^-4	0.556	INTERGENIC
3R	23021227	3R_23021227_SNP [dm3] 3R_27195505_SNP [dm6]	C	T	2.566e^-4	0.556	INTERGENIC	regulatory region REDfly_CRMs
3R	8866873	3R_8866873_SNP [dm3] 3R_13041151_SNP [dm6]	T	G	2.567e^-4	0.556	SPLICE_SITE_REGION snk UPSTREAM CG11670 DOWNSTREAM CG11668 INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8865603	3R_8865603_SNP [dm3] 3R_13039881_SNP [dm6]	T	C	2.573e^-4	0.556	DOWNSTREAM snk INTRON CG11668
2L	3017867	2L_3017867_SNP [dm3] 2L_3017867_SNP [dm6]	T	G	2.581e^-4	0.556	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
2R	5873269	2R_5873269_INS [dm3] 2R_9985764_INS [dm6]	G	GGTCGTTC	2.582e^-4	0.556	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12523869	3L_12523869_SNP [dm3] 3L_12530769_SNP [dm6]	A	G	2.589e^-4	0.556	SYNONYMOUS_CODING Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10629648	X_10629648_SNP [dm3] X_10735615_SNP [dm6]	G	A	2.596e^-4	0.556	INTRON CG32676
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	2.601e^-4	0.556	INTERGENIC
2L	14956723	2L_14956723_SNP [dm3] 2L_14956723_SNP [dm6]	G	C	2.602e^-4	0.556	INTRON CG42313
2R	5793958	2R_5793958_SNP [dm3] 2R_9906453_SNP [dm6]	G	A	2.605e^-4	0.556	INTRON FMRFa
3L	14433775	3L_14433775_SNP [dm3] 3L_14440675_SNP [dm6]	T	A	2.608e^-4	0.556	INTRON bbg
2L	3093427	2L_3093427_SNP [dm3] 2L_3093427_SNP [dm6]	C	A	2.610e^-4	0.556	INTRON toc
3L	1288454	3L_1288454_SNP [dm3] 3L_1288454_SNP [dm6]	A	G	2.612e^-4	0.556	DOWNSTREAM CG32333 INTRON CG32333
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	2.612e^-4	0.556	INTERGENIC
2R	16115428	2R_16115428_MNP [dm3] 2R_20227923_MNP [dm6]	TCC	AGT	2.612e^-4	0.556	INTERGENIC
2R	16966284	2R_16966284_SNP [dm3] 2R_21078779_SNP [dm6]	A	T	2.612e^-4	0.556	INTRON Treh
3R	7733206	3R_7733206_SNP [dm3] 3R_11907484_SNP [dm6]	A	G	2.616e^-4	0.556	INTRON Cad87A
3L	19014518	3L_19014518_SNP [dm3] 3L_19021418_SNP [dm6]	T	G	2.616e^-4	0.556	INTRON nkd
2L	11440898	2L_11440898_SNP [dm3] 2L_11440898_SNP [dm6]	T	C	2.625e^-4	0.557	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8874548	3R_8874548_SNP [dm3] 3R_13048826_SNP [dm6]	T	C	2.627e^-4	0.557	NON_SYNONYMOUS_CODING CG31157 DOWNSTREAM CG7966
3R	5736783	3R_5736783_SNP [dm3] 3R_9911061_SNP [dm6]	C	T	2.629e^-4	0.557	INTRON Glut4EF
3R	9078266	3R_9078266_SNP [dm3] 3R_13252544_SNP [dm6]	C	T	2.638e^-4	0.558	INTRON Ace
2L	14036308	2L_14036308_SNP [dm3] 2L_14036308_SNP [dm6]	T	C	2.638e^-4	0.558	EXON CR45284
3R	21013311	3R_21013311_DEL [dm3] 3R_25187589_DEL [dm6]	TTCCCATT	T	2.646e^-4	0.558	INTRON lobo & 1 other
3R	13831672	3R_13831672_SNP [dm3] 3R_18005950_SNP [dm6]	G	A	2.648e^-4	0.558	INTRON cpo
3R	8897358	3R_8897358_SNP [dm3] 3R_13071636_SNP [dm6]	A	G	2.648e^-4	0.558	UPSTREAM sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1629414	3L_1629414_INS [dm3] 3L_1629414_INS [dm6]	A	AA	2.650e^-4	0.558	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10125741	3L_10125741_SNP [dm3] 3L_10132641_SNP [dm6]	C	T	2.657e^-4	0.559	INTRON dpr6
3L	1591462	3L_1591462_INS [dm3] 3L_1591462_INS [dm6]	T	TT	2.669e^-4	0.559	INTRON CG13917
2R	5829526	2R_5829526_SNP [dm3] 2R_9942021_SNP [dm6]	C	A	2.673e^-4	0.559	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	8865513	3R_8865513_SNP [dm3] 3R_13039791_SNP [dm6]	A	G	2.676e^-4	0.559	SYNONYMOUS_CODING CG11668 DOWNSTREAM snk
X	3444930	X_3444930_SNP [dm3] X_3550897_SNP [dm6]	C	T	2.677e^-4	0.559	INTRON CG32791
3R	8568266	3R_8568266_SNP [dm3] 3R_12742544_SNP [dm6]	C	T	2.678e^-4	0.559	SYNONYMOUS_CODING CG5999
2L	13437544	2L_13437544_SNP [dm3] 2L_13437544_SNP [dm6]	A	G	2.681e^-4	0.559	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	8394727	3R_8394727_SNP [dm3] 3R_12569005_SNP [dm6]	C	T	2.685e^-4	0.559	INTRON Octbeta2R
X	15227105	X_15227105_SNP [dm3] X_15333072_SNP [dm6]	A	G	2.685e^-4	0.559	START_GAINED CG9114 UTR_5_PRIME CG9114 UPSTREAM HDAC6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19937743	3L_19937743_DEL [dm3] 3L_19944643_DEL [dm6]	AAAAT	A	2.688e^-4	0.559	INTRON Ac76E
3L	2428117	3L_2428117_SNP [dm3] 3L_2428117_SNP [dm6]	C	G	2.689e^-4	0.559	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16115397	2R_16115397_SNP [dm3] 2R_20227892_SNP [dm6]	A	C	2.697e^-4	0.56	INTERGENIC
3R	22868025	3R_22868025_SNP [dm3] 3R_27042303_SNP [dm6]	T	G	2.700e^-4	0.56	INTRON RYa-R
3R	2750163	3R_2750163_SNP [dm3] 3R_6924441_SNP [dm6]	C	A	2.706e^-4	0.56	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10001656	3L_10001656_SNP [dm3] 3L_10008556_SNP [dm6]	T	G	2.708e^-4	0.56	INTRON dpr6
2L	11442767	2L_11442767_SNP [dm3] 2L_11442767_SNP [dm6]	T	C	2.716e^-4	0.56	INTRON salm
2R	14497175	2R_14497175_INS [dm3] 2R_18609670_INS [dm6]	A	AGTTAAAAA	2.719e^-4	0.56	INTRON GEFmeso
2R	14497188	2R_14497188_SNP [dm3] 2R_18609683_SNP [dm6]	A	T	2.722e^-4	0.56	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
2R	18382972	2R_18382972_SNP [dm3] 2R_22495467_SNP [dm6]	T	C	2.724e^-4	0.56	UTR_3_PRIME px
3R	8981810	3R_8981810_SNP [dm3] 3R_13156088_SNP [dm6]	A	G	2.731e^-4	0.56	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8384677	3R_8384677_SNP [dm3] 3R_12558955_SNP [dm6]	A	T	2.731e^-4	0.56	INTRON Octbeta2R
X	13327580	X_13327580_SNP [dm3] X_13433547_SNP [dm6]	A	T	2.732e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8639025	3R_8639025_SNP [dm3] 3R_12813303_SNP [dm6]	T	C	2.734e^-4	0.56	INTRON CG31345
3R	9000989	3R_9000989_SNP [dm3] 3R_13175267_SNP [dm6]	T	G	2.737e^-4	0.56	INTERGENIC
2R	9648655	2R_9648655_SNP [dm3] 2R_13761150_SNP [dm6]	G	C	2.737e^-4	0.56	INTERGENIC
3R	9104576	3R_9104576_SNP [dm3] 3R_13278854_SNP [dm6]	A	G	2.747e^-4	0.562	UPSTREAM CG8630 INTERGENIC
3R	12010436	3R_12010436_SNP [dm3] 3R_16184714_SNP [dm6]	A	G	2.749e^-4	0.562	INTRON CG8927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1629316	3R_1629316_SNP [dm3] 3R_5803594_SNP [dm6]	G	T	2.770e^-4	0.563	INTRON CG11000
3R	4058399	3R_4058399_SNP [dm3] 3R_8232677_SNP [dm6]	C	G	2.771e^-4	0.563	UPSTREAM CR45551 & 1 other DOWNSTREAM CR45549 INTERGENIC
2L	2154663	2L_2154663_SNP [dm3] 2L_2154663_SNP [dm6]	C	G	2.773e^-4	0.563	SYNONYMOUS_CODING AIF	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16115414	2R_16115414_SNP [dm3] 2R_20227909_SNP [dm6]	C	G	2.776e^-4	0.563	INTERGENIC
3L	19096539	3L_19096539_SNP [dm3] 3L_19103439_SNP [dm6]	C	A	2.777e^-4	0.563	INTERGENIC
3R	8538952	3R_8538952_SNP [dm3] 3R_12713230_SNP [dm6]	G	C	2.786e^-4	0.563	UTR_3_PRIME Men UPSTREAM mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
X	1995583	X_1995583_SNP [dm3] X_2101550_SNP [dm6]	T	A	2.786e^-4	0.563	UPSTREAM snoRNA:Me18S-C1024 & 1 other INTRON csw
3R	19258765	3R_19258765_SNP [dm3] 3R_23433043_SNP [dm6]	A	G	2.792e^-4	0.563	INTRON CG4374
2R	11603938	2R_11603938_SNP [dm3] 2R_15716433_SNP [dm6]	C	T	2.792e^-4	0.563	INTERGENIC
X	19307794	X_19307794_SNP [dm3] X_19413761_SNP [dm6]	G	A	2.794e^-4	0.563	INTRON kek5
3R	7857439	3R_7857439_SNP [dm3] 3R_12031717_SNP [dm6]	G	A	2.796e^-4	0.563	UTR_5_PRIME CG42504 & 2 others
3L	14581209	3L_14581209_SNP [dm3] 3L_14588109_SNP [dm6]	C	T	2.805e^-4	0.563	INTRON HGTX	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16330526	3L_16330526_INS [dm3] 3L_16337426_INS [dm6]	A	AAG	2.817e^-4	0.563	INTERGENIC
X	9666289	X_9666289_SNP [dm3] X_9772256_SNP [dm6]	T	C	2.818e^-4	0.563	INTERGENIC
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	2.823e^-4	0.563	INTRON mspo
2L	13437669	2L_13437669_SNP [dm3] 2L_13437669_SNP [dm6]	G	A	2.827e^-4	0.563	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	14960312	2L_14960312_SNP [dm3] 2L_14960312_SNP [dm6]	T	C	2.827e^-4	0.563	INTRON CG42313
3R	8585185	3R_8585185_SNP [dm3] 3R_12759463_SNP [dm6]	A	G	2.832e^-4	0.563	INTRON beat-Vc
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	2.833e^-4	0.563	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	2.834e^-4	0.563	INTERGENIC
3L	7624604	3L_7624604_SNP [dm3] 3L_7631504_SNP [dm6]	A	T	2.834e^-4	0.563	INTRON CG33275
X	4861916	X_4861916_SNP [dm3] X_4967883_SNP [dm6]	A	C	2.840e^-4	0.563	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	2.843e^-4	0.563	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	8584472	3R_8584472_SNP [dm3] 3R_12758750_SNP [dm6]	T	G	2.844e^-4	0.563	INTRON beat-Vc
3L	1595568	3L_1595568_SNP [dm3] 3L_1595568_SNP [dm6]	A	G	2.845e^-4	0.563	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	2.845e^-4	0.563	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
2L	14674740	2L_14674740_SNP [dm3] 2L_14674740_SNP [dm6]	A	T	2.848e^-4	0.563	INTRON osp
2L	11428759	2L_11428759_SNP [dm3] 2L_11428759_SNP [dm6]	T	C	2.848e^-4	0.563	INTERGENIC
3L	11449948	3L_11449948_SNP [dm3] 3L_11456848_SNP [dm6]	C	T	2.850e^-4	0.563	DOWNSTREAM CG12289 INTERGENIC
3L	5605000	3L_5605000_SNP [dm3] 3L_5611900_SNP [dm6]	A	G	2.853e^-4	0.563	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6578617	3R_6578617_INS [dm3] 3R_10752895_INS [dm6]	A	AGCCAG	2.853e^-4	0.563	DOWNSTREAM CG14691 INTERGENIC	regulatory region REDfly_CRMs
3L	5613200	3L_5613200_SNP [dm3] 3L_5620100_SNP [dm6]	T	A	2.854e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	5393475	2L_5393475_SNP [dm3] 2L_5393475_SNP [dm6]	A	T	2.859e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21203425	3L_21203425_SNP [dm3] 3L_21210325_SNP [dm6]	A	G	2.859e^-4	0.563	UTR_5_PRIME CG10508 UPSTREAM CG10510
2R	12120393	2R_12120393_SNP [dm3] 2R_16232888_SNP [dm6]	T	A	2.863e^-4	0.563	INTRON CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	2.863e^-4	0.563	DOWNSTREAM TkR86C INTERGENIC
X	8683022	X_8683022_SNP [dm3] X_8788989_SNP [dm6]	A	G	2.865e^-4	0.563	INTRON Lim1
3L	4079932	3L_4079932_SNP [dm3] 3L_4079932_SNP [dm6]	A	G	2.876e^-4	0.564	INTRON Gad1
3R	20697082	3R_20697082_SNP [dm3] 3R_24871360_SNP [dm6]	T	A	2.880e^-4	0.564	UTR_3_PRIME CG3744 UPSTREAM CycB3 DOWNSTREAM CG3744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12327922	2R_12327922_SNP [dm3] 2R_16440417_SNP [dm6]	G	T	2.882e^-4	0.564	INTERGENIC
3L	14573514	3L_14573514_SNP [dm3] 3L_14580414_SNP [dm6]	G	A	2.896e^-4	0.564	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8782135	3R_8782135_SNP [dm3] 3R_12956413_SNP [dm6]	T	A	2.909e^-4	0.564	INTRON grsm
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	2.918e^-4	0.564	INTRON mAChR-A	TF binding site mE1_TFBS_cad
2R	5793959	2R_5793959_SNP [dm3] 2R_9906454_SNP [dm6]	T	C	2.919e^-4	0.564	INTRON FMRFa
2R	14497053	2R_14497053_SNP [dm3] 2R_18609548_SNP [dm6]	C	G	2.920e^-4	0.564	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	2.922e^-4	0.564	INTERGENIC
3R	10846773	3R_10846773_SNP [dm3] 3R_15021051_SNP [dm6]	T	G	2.925e^-4	0.564	INTERGENIC
3L	11653145	3L_11653145_SNP [dm3] 3L_11660045_SNP [dm6]	T	A	2.928e^-4	0.564	INTRON CG32085
3R	6538729	3R_6538729_SNP [dm3] 3R_10713007_SNP [dm6]	A	G	2.936e^-4	0.564	INTERGENIC
3R	22112089	3R_22112089_SNP [dm3] 3R_26286367_SNP [dm6]	G	T	2.938e^-4	0.564	INTERGENIC
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	2.940e^-4	0.564	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3R	7712533	3R_7712533_SNP [dm3] 3R_11886811_SNP [dm6]	G	T	2.941e^-4	0.564	NON_SYNONYMOUS_CODING mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8744143	3R_8744143_SNP [dm3] 3R_12918421_SNP [dm6]	G	T	2.941e^-4	0.564	INTRON beat-Vb
2L	11010472	2L_11010472_SNP [dm3] 2L_11010472_SNP [dm6]	C	T	2.944e^-4	0.564	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	9017631	3R_9017631_SNP [dm3] 3R_13191909_SNP [dm6]	C	A	2.945e^-4	0.564	NON_SYNONYMOUS_CODING CG8141
2R	5860812	2R_5860812_SNP [dm3] 2R_9973307_SNP [dm6]	C	A	2.953e^-4	0.564	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9106637	3R_9106637_SNP [dm3] 3R_13280915_SNP [dm6]	T	A	2.955e^-4	0.564	INTRON CG8630
2R	5882805	2R_5882805_SNP [dm3] 2R_9995300_SNP [dm6]	G	A	2.958e^-4	0.564	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
3R	8446274	3R_8446274_SNP [dm3] 3R_12620552_SNP [dm6]	C	T	2.962e^-4	0.564	INTERGENIC
3L	12476329	3L_12476329_SNP [dm3] 3L_12483229_SNP [dm6]	C	T	2.962e^-4	0.564	INTRON CG10663 & 1 other
X	8814616	X_8814616_SNP [dm3] X_8920583_SNP [dm6]	T	C	2.967e^-4	0.564	UPSTREAM CR44111 INTRON rdgA
2L	9809585	2L_9809585_SNP [dm3] 2L_9809585_SNP [dm6]	C	T	2.968e^-4	0.564	INTRON nAChRalpha6
3R	8757359	3R_8757359_SNP [dm3] 3R_12931637_SNP [dm6]	G	A	2.968e^-4	0.564	NON_SYNONYMOUS_CODING beat-Vb UPSTREAM CR44236
2L	15854566	2L_15854566_SNP [dm3] 2L_15854566_SNP [dm6]	G	T	2.969e^-4	0.564	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
3R	22962190	3R_22962190_SNP [dm3] 3R_27136468_SNP [dm6]	C	T	2.970e^-4	0.564	INTRON CG6051
3L	7030586	3L_7030586_SNP [dm3] 3L_7037486_SNP [dm6]	C	A	2.976e^-4	0.564	INTRON Mp
3R	20697081	3R_20697081_SNP [dm3] 3R_24871359_SNP [dm6]	G	T	2.978e^-4	0.564	UTR_3_PRIME CG3744 UPSTREAM CycB3 DOWNSTREAM CG3744	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22754143	3R_22754143_SNP [dm3] 3R_26928421_SNP [dm6]	T	C	2.985e^-4	0.564	INTRON sda
X	20190257	X_20190257_DEL [dm3] X_20319230_DEL [dm6]	ACAGAATGCCA...	A	2.987e^-4	0.564	INTRON CG1504
2L	12171598	2L_12171598_SNP [dm3] 2L_12171598_SNP [dm6]	T	C	2.988e^-4	0.564	UTR_3_PRIME CG6583 DOWNSTREAM CG17217
3R	8886986	3R_8886986_SNP [dm3] 3R_13061264_SNP [dm6]	G	A	2.996e^-4	0.564	INTRON sim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11519718	3L_11519718_SNP [dm3] 3L_11526618_SNP [dm6]	T	A	2.997e^-4	0.564	INTRON Mob2
3R	2163276	3R_2163276_SNP [dm3] 3R_6337554_SNP [dm6]	A	C	2.999e^-4	0.564	DOWNSTREAM Osi19 INTERGENIC
2L	9982684	2L_9982684_DEL [dm3] 2L_9982684_DEL [dm6]	ACTTCTTC	G	2.999e^-4	0.564	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2L	9982717	2L_9982717_DEL [dm3] 2L_9982717_DEL [dm6]	TCCTTC	T	2.999e^-4	0.564	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	5829099	2R_5829099_SNP [dm3] 2R_9941594_SNP [dm6]	C	T	3.002e^-4	0.564	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	1631137	2L_1631137_SNP [dm3] 2L_1631137_SNP [dm6]	T	G	3.003e^-4	0.564	INTERGENIC
X	8529483	X_8529483_SNP [dm3] X_8635450_SNP [dm6]	T	A	3.011e^-4	0.564	INTRON oc	TF binding site BDTNP1_TFBS_dl
2L	11428814	2L_11428814_SNP [dm3] 2L_11428814_SNP [dm6]	G	A	3.015e^-4	0.564	INTERGENIC
3R	8890699	3R_8890699_SNP [dm3] 3R_13064977_SNP [dm6]	A	G	3.023e^-4	0.564	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	3.024e^-4	0.564	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
3R	7777492	3R_7777492_SNP [dm3] 3R_11951770_SNP [dm6]	G	A	3.024e^-4	0.564	SYNONYMOUS_CODING CG31211	TF binding site mE1_TFBS_cad

Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C24_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results