DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.090e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.008714

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	12.3111	0.0021

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1985 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2769334	X_2769334_SNP [dm3] X_2875301_SNP [dm6]	T	A	4.906e^-7	0.887	DOWNSTREAM CG14417 INTRON kirre
X	14065943	X_14065943_SNP [dm3] X_14171910_SNP [dm6]	G	A	3.090e^-6	0.887	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	3.706e^-6	0.887	INTRON CG13670	TF binding site mE1_TFBS_cad
X	4855898	X_4855898_SNP [dm3] X_4961865_SNP [dm6]	C	G	5.466e^-6	0.887	UPSTREAM SIP3 INTRON CR44833
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	6.498e^-6	0.887	INTRON CG5455
2L	14545567	2L_14545567_SNP [dm3] 2L_14545567_SNP [dm6]	G	A	6.761e^-6	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13221413	X_13221413_SNP [dm3] X_13327380_SNP [dm6]	T	C	6.981e^-6	0.887	SYNONYMOUS_CODING IP3K2
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	7.220e^-6	0.887	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8860421	3L_8860421_SNP [dm3] 3L_8867321_SNP [dm6]	G	A	7.986e^-6	0.887	INTRON dally
3L	8314503	3L_8314503_SNP [dm3] 3L_8321403_SNP [dm6]	A	T	8.156e^-6	0.887	INTRON CG13670	TF binding site mE1_TFBS_cad
X	4438150	X_4438150_SNP [dm3] X_4544117_SNP [dm6]	T	C	9.724e^-6	0.887	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2L	14545086	2L_14545086_SNP [dm3] 2L_14545086_SNP [dm6]	A	T	1.046e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15100035	2L_15100035_DEL [dm3] 2L_15100035_DEL [dm6]	CC	T	1.053e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11177866	3L_11177866_SNP [dm3] 3L_11184766_SNP [dm6]	G	T	1.079e^-5	0.887	INTRON GlcAT-P
2R	6997655	2R_6997655_SNP [dm3] 2R_11110150_SNP [dm6]	T	A	1.222e^-5	0.887	INTRON luna
2L	4957319	2L_4957319_SNP [dm3] 2L_4957319_SNP [dm6]	C	G	1.233e^-5	0.887	SYNONYMOUS_CODING Marcal1
3L	1365195	3L_1365195_SNP [dm3] 3L_1365195_SNP [dm6]	C	T	1.246e^-5	0.887	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14545578	2L_14545578_SNP [dm3] 2L_14545578_SNP [dm6]	T	G	1.271e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14545079	2L_14545079_SNP [dm3] 2L_14545079_SNP [dm6]	T	C	1.323e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22294769	3R_22294769_SNP [dm3] 3R_26469047_SNP [dm6]	T	C	1.328e^-5	0.887	INTRON CG5455
2L	15560955	2L_15560955_SNP [dm3] 2L_15560955_SNP [dm6]	G	C	1.435e^-5	0.887	INTRON kek3
2R	18506259	2R_18506259_SNP [dm3] 2R_22618754_SNP [dm6]	G	A	1.443e^-5	0.887	INTRON CG33143
3R	6294504	3R_6294504_SNP [dm3] 3R_10468782_SNP [dm6]	T	A	1.591e^-5	0.887	INTERGENIC
3L	15248370	3L_15248370_SNP [dm3] 3L_15255270_SNP [dm6]	T	G	1.598e^-5	0.887	INTERGENIC
3R	10692944	3R_10692944_SNP [dm3] 3R_14867222_SNP [dm6]	A	T	1.625e^-5	0.887	INTRON btsz
3L	3804882	3L_3804882_SNP [dm3] 3L_3804882_SNP [dm6]	T	C	1.630e^-5	0.887	INTRON CG32264 & 1 other
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	1.795e^-5	0.887	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	2874740	2R_2874740_SNP [dm3] 2R_6987235_SNP [dm6]	T	A	1.812e^-5	0.887	INTRON CG17002	TF binding site mE1_TFBS_cad
3R	10692958	3R_10692958_SNP [dm3] 3R_14867236_SNP [dm6]	T	C	1.816e^-5	0.887	INTRON btsz
2R	17981620	2R_17981620_SNP [dm3] 2R_22094115_SNP [dm6]	G	A	1.828e^-5	0.887	NON_SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18474107	2R_18474107_SNP [dm3] 2R_22586602_SNP [dm6]	G	T	1.964e^-5	0.887	INTRON dnr1
2L	15100047	2L_15100047_SNP [dm3] 2L_15100047_SNP [dm6]	T	C	2.120e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12146903	3R_12146903_SNP [dm3] 3R_16321181_SNP [dm6]	G	A	2.172e^-5	0.887	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
3R	2839925	3R_2839925_SNP [dm3] 3R_7014203_SNP [dm6]	A	T	2.196e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10294712	3L_10294712_SNP [dm3] 3L_10301612_SNP [dm6]	G	A	2.242e^-5	0.887	INTERGENIC
3R	2840027	3R_2840027_SNP [dm3] 3R_7014305_SNP [dm6]	T	A	2.309e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4438547	X_4438547_SNP [dm3] X_4544514_SNP [dm6]	A	G	2.503e^-5	0.887	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14545406	2L_14545406_SNP [dm3] 2L_14545406_SNP [dm6]	A	T	2.525e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10692957	3R_10692957_SNP [dm3] 3R_14867235_SNP [dm6]	G	C	2.540e^-5	0.887	INTRON btsz
2L	14545552	2L_14545552_SNP [dm3] 2L_14545552_SNP [dm6]	G	A	2.564e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	2.639e^-5	0.887	INTRON capu	TF binding site mE1_TFBS_bab1
3L	10295963	3L_10295963_SNP [dm3] 3L_10302863_SNP [dm6]	C	T	2.692e^-5	0.887	INTERGENIC
2L	15100021	2L_15100021_SNP [dm3] 2L_15100021_SNP [dm6]	A	T	2.792e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15560854	2L_15560854_SNP [dm3] 2L_15560854_SNP [dm6]	A	T	2.815e^-5	0.887	INTRON kek3
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	2.836e^-5	0.887	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	2.925e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12872555	2R_12872555_SNP [dm3] 2R_16985050_SNP [dm6]	A	G	2.933e^-5	0.887	INTRON Cbp53E
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	3.016e^-5	0.887	INTRON Prosap
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	3.067e^-5	0.887	UPSTREAM hoe1 INTRON hoe1
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	3.117e^-5	0.887	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	3.307e^-5	0.887	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	11808585	2R_11808585_SNP [dm3] 2R_15921080_SNP [dm6]	T	C	3.323e^-5	0.887	INTRON sli	TF binding site BDTNP1_TFBS_dl
2L	14674740	2L_14674740_SNP [dm3] 2L_14674740_SNP [dm6]	A	T	3.331e^-5	0.887	INTRON osp
X	10798126	X_10798126_SNP [dm3] X_10904093_SNP [dm6]	G	A	3.412e^-5	0.887	INTERGENIC
3L	13895902	3L_13895902_SNP [dm3] 3L_13902802_SNP [dm6]	A	T	3.527e^-5	0.887	UTR_5_PRIME dysc
3L	10298570	3L_10298570_SNP [dm3] 3L_10305470_SNP [dm6]	A	G	3.592e^-5	0.887	INTERGENIC
3R	22294891	3R_22294891_SNP [dm3] 3R_26469169_SNP [dm6]	T	A	3.623e^-5	0.887	DOWNSTREAM plum INTRON CG5455
2R	4383361	2R_4383361_SNP [dm3] 2R_8495856_SNP [dm6]	A	G	3.656e^-5	0.887	INTRON mtt
3L	12382313	3L_12382313_SNP [dm3] 3L_12389213_SNP [dm6]	C	A	3.748e^-5	0.887	INTRON Ncc69
3R	12710778	3R_12710778_SNP [dm3] 3R_16885056_SNP [dm6]	C	A	3.955e^-5	0.887	INTRON iab-8
2R	11181973	2R_11181973_SNP [dm3] 2R_15294468_SNP [dm6]	T	C	4.017e^-5	0.887	DOWNSTREAM CR44241 INTRON Trpm
3R	25115832	3R_25115832_SNP [dm3] 3R_29290110_SNP [dm6]	G	A	4.095e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17873923	2R_17873923_SNP [dm3] 2R_21986418_SNP [dm6]	C	G	4.199e^-5	0.887	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7512818	2R_7512818_SNP [dm3] 2R_11625313_SNP [dm6]	A	G	4.237e^-5	0.887	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10404253	2R_10404253_SNP [dm3] 2R_14516748_SNP [dm6]	C	A	4.244e^-5	0.887	INTERGENIC
2L	2919910	2L_2919910_SNP [dm3] 2L_2919910_SNP [dm6]	C	T	4.314e^-5	0.887	INTRON lilli
3L	18140632	3L_18140632_SNP [dm3] 3L_18147532_SNP [dm6]	T	C	4.350e^-5	0.887	INTERGENIC
X	2769361	X_2769361_DEL [dm3] X_2875328_DEL [dm6]	AGAAAACATC	A	4.466e^-5	0.887	DOWNSTREAM CG14417 INTRON kirre
3R	17066906	3R_17066906_SNP [dm3] 3R_21241184_SNP [dm6]	G	C	4.470e^-5	0.887	INTERGENIC	regulatory region REDfly_CRMs
3R	10693007	3R_10693007_INS [dm3] 3R_14867285_INS [dm6]	A	ATTCA	4.471e^-5	0.887	INTRON btsz
3L	12718139	3L_12718139_SNP [dm3] 3L_12725039_SNP [dm6]	G	A	4.508e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13055863	3R_13055863_SNP [dm3] 3R_17230141_SNP [dm6]	C	G	4.520e^-5	0.887	INTERGENIC
X	21948706	X_21948706_SNP [dm3] X_22546870_SNP [dm6]	G	A	4.558e^-5	0.887	UPSTREAM CG17601 INTERGENIC
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	4.632e^-5	0.887	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12131824	3R_12131824_SNP [dm3] 3R_16306102_SNP [dm6]	C	T	4.647e^-5	0.887	START_GAINED Zip89B UTR_5_PRIME Zip89B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16782062	2L_16782062_SNP [dm3] 2L_16782062_SNP [dm6]	G	A	4.780e^-5	0.887	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	10295796	3L_10295796_SNP [dm3] 3L_10302696_SNP [dm6]	A	T	4.795e^-5	0.887	INTERGENIC
3R	10692981	3R_10692981_SNP [dm3] 3R_14867259_SNP [dm6]	C	T	4.857e^-5	0.887	INTRON btsz
2R	16353598	2R_16353598_SNP [dm3] 2R_20466093_SNP [dm6]	C	A	4.875e^-5	0.887	INTRON CG12484
3R	7114154	3R_7114154_SNP [dm3] 3R_11288432_SNP [dm6]	T	G	4.970e^-5	0.887	INTRON CR31386
2R	16019746	2R_16019746_SNP [dm3] 2R_20132241_SNP [dm6]	A	G	4.975e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1697095	2L_1697095_SNP [dm3] 2L_1697095_SNP [dm6]	A	G	5.030e^-5	0.887	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	5.199e^-5	0.887	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15728466	2L_15728466_SNP [dm3] 2L_15728466_SNP [dm6]	G	A	5.229e^-5	0.887	UTR_3_PRIME CycE	TF binding site BDTNP1_TFBS_dl
3L	19686942	3L_19686942_SNP [dm3] 3L_19693842_SNP [dm6]	T	A	5.246e^-5	0.887	INTRON verm
3L	5857071	3L_5857071_SNP [dm3] 3L_5863971_SNP [dm6]	T	A	5.256e^-5	0.887	INTERGENIC
X	4438542	X_4438542_SNP [dm3] X_4544509_SNP [dm6]	A	T	5.264e^-5	0.887	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11945356	3R_11945356_SNP [dm3] 3R_16119634_SNP [dm6]	A	T	5.316e^-5	0.887	INTRON Sb
3R	5446009	3R_5446009_SNP [dm3] 3R_9620287_SNP [dm6]	G	A	5.345e^-5	0.887	INTRON CG8312
3L	11183481	3L_11183481_SNP [dm3] 3L_11190381_SNP [dm6]	G	T	5.407e^-5	0.887	INTRON GlcAT-P
X	5030697	X_5030697_SNP [dm3] X_5136664_SNP [dm6]	G	A	5.457e^-5	0.887	INTRON rg & 1 other
3R	22294878	3R_22294878_SNP [dm3] 3R_26469156_SNP [dm6]	C	G	5.474e^-5	0.887	DOWNSTREAM plum INTRON CG5455
2R	8854994	2R_8854994_SNP [dm3] 2R_12967489_SNP [dm6]	G	C	5.479e^-5	0.887	NON_SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2266061	2L_2266061_SNP [dm3] 2L_2266061_SNP [dm6]	G	A	5.490e^-5	0.887	UPSTREAM CG34049 INTERGENIC
2R	10404286	2R_10404286_SNP [dm3] 2R_14516781_SNP [dm6]	G	A	5.577e^-5	0.887	INTERGENIC
2L	14545413	2L_14545413_SNP [dm3] 2L_14545413_SNP [dm6]	A	G	5.659e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12132497	3R_12132497_SNP [dm3] 3R_16306775_SNP [dm6]	C	A	5.749e^-5	0.887	NON_SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18702415	2R_18702415_SNP [dm3] 2R_22814910_SNP [dm6]	A	G	5.755e^-5	0.887	INTRON stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	3827109	2R_3827109_SNP [dm3] 2R_7939604_SNP [dm6]	A	G	5.771e^-5	0.887	UTR_5_PRIME CG30380 UPSTREAM CG30379 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4438551	X_4438551_SNP [dm3] X_4544518_SNP [dm6]	T	C	5.796e^-5	0.887	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19416192	X_19416192_SNP [dm3] X_19522159_SNP [dm6]	T	C	5.824e^-5	0.887	UTR_5_PRIME CoRest UPSTREAM l_1_G0156 INTRON CoRest	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15100132	2L_15100132_SNP [dm3] 2L_15100132_SNP [dm6]	G	A	5.833e^-5	0.887	INTERGENIC
2R	18074130	2R_18074130_SNP [dm3] 2R_22186625_SNP [dm6]	C	T	5.930e^-5	0.887	SYNONYMOUS_CODING Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4957754	2L_4957754_SNP [dm3] 2L_4957754_SNP [dm6]	T	C	6.006e^-5	0.887	SPLICE_SITE_REGION Marcal1 SYNONYMOUS_CODING Marcal1 UPSTREAM CG34124
2R	4383359	2R_4383359_SNP [dm3] 2R_8495854_SNP [dm6]	C	T	6.059e^-5	0.887	INTRON mtt
2L	11390883	2L_11390883_SNP [dm3] 2L_11390883_SNP [dm6]	T	C	6.082e^-5	0.887	EXON CR43681	regulatory region REDfly_CRMs
X	8756926	X_8756926_SNP [dm3] X_8862893_SNP [dm6]	T	G	6.132e^-5	0.887	INTRON CG12075
3R	1954322	3R_1954322_SNP [dm3] 3R_6128600_SNP [dm6]	A	G	6.150e^-5	0.887	UPSTREAM CR43487 INTERGENIC
2R	7059730	2R_7059730_SNP [dm3] 2R_11172225_SNP [dm6]	G	T	6.154e^-5	0.887	UPSTREAM CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	6.168e^-5	0.887	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14322683	X_14322683_SNP [dm3] X_14428650_SNP [dm6]	G	A	6.317e^-5	0.887	INTRON dpr8
2R	11934888	2R_11934888_SNP [dm3] 2R_16047383_SNP [dm6]	G	C	6.338e^-5	0.887	UPSTREAM CG8405 DOWNSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	1627022	2L_1627022_INS [dm3] 2L_1627022_INS [dm6]	T	TTT	6.351e^-5	0.887	INTERGENIC
2L	14674851	2L_14674851_SNP [dm3] 2L_14674851_SNP [dm6]	A	G	6.508e^-5	0.887	INTRON osp
3L	13329225	3L_13329225_SNP [dm3] 3L_13336125_SNP [dm6]	T	C	6.526e^-5	0.887	INTERGENIC
3L	11405551	3L_11405551_SNP [dm3] 3L_11412451_SNP [dm6]	G	T	6.558e^-5	0.887	INTERGENIC
2L	7077576	2L_7077576_SNP [dm3] 2L_7077576_SNP [dm6]	T	C	6.609e^-5	0.887	INTRON Pvf2
3L	19493132	3L_19493132_SNP [dm3] 3L_19500032_SNP [dm6]	C	G	6.671e^-5	0.887	DOWNSTREAM CG9452 INTRON CG9451
2R	7084310	2R_7084310_SNP [dm3] 2R_11196805_SNP [dm6]	T	G	6.744e^-5	0.887	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	8682503	3L_8682503_SNP [dm3] 3L_8689403_SNP [dm6]	C	T	6.754e^-5	0.887	INTERGENIC
3L	11182475	3L_11182475_SNP [dm3] 3L_11189375_SNP [dm6]	G	A	6.815e^-5	0.887	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2L	14674837	2L_14674837_SNP [dm3] 2L_14674837_SNP [dm6]	G	A	6.865e^-5	0.887	INTRON osp
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	6.905e^-5	0.887	INTERGENIC
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	6.912e^-5	0.887	INTRON sNPF
2L	3053813	2L_3053813_SNP [dm3] 2L_3053813_SNP [dm6]	G	A	7.016e^-5	0.887	SYNONYMOUS_CODING v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	4954059	X_4954059_INS [dm3] X_5060026_INS [dm6]	G	GG	7.056e^-5	0.887	INTRON CR44833 & 1 other
3L	13290743	3L_13290743_SNP [dm3] 3L_13297643_SNP [dm6]	A	T	7.062e^-5	0.887	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 & 1 other INTERGENIC
2R	20216261	2R_20216261_SNP [dm3] 2R_24328738_SNP [dm6]	C	G	7.116e^-5	0.887	UPSTREAM CR44810 INTRON CR44810
3R	6851976	3R_6851976_SNP [dm3] 3R_11026254_SNP [dm6]	T	C	7.185e^-5	0.887	INTRON CG34114
3R	6851978	3R_6851978_SNP [dm3] 3R_11026256_SNP [dm6]	C	G	7.185e^-5	0.887	INTRON CG34114
X	18886571	X_18886571_SNP [dm3] X_18992538_SNP [dm6]	G	C	7.269e^-5	0.887	INTRON CG43759
3L	3470254	3L_3470254_DEL [dm3] 3L_3470254_DEL [dm6]	TT	T	7.290e^-5	0.887	INTRON CG14971
2L	2112116	2L_2112116_SNP [dm3] 2L_2112116_SNP [dm6]	A	G	7.421e^-5	0.887	INTERGENIC
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	7.472e^-5	0.887	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21337061	3R_21337061_SNP [dm3] 3R_25511339_SNP [dm6]	A	T	7.563e^-5	0.887	INTERGENIC
3L	18198133	3L_18198133_SNP [dm3] 3L_18205033_SNP [dm6]	G	C	7.679e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	2301902	3R_2301902_SNP [dm3] 3R_6476180_SNP [dm6]	C	A	7.738e^-5	0.887	INTERGENIC
X	13613801	X_13613801_SNP [dm3] X_13719768_SNP [dm6]	T	G	7.759e^-5	0.887	SYNONYMOUS_CODING CG9941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8163215	3R_8163215_SNP [dm3] 3R_12337493_SNP [dm6]	G	A	7.765e^-5	0.887	INTRON CR44941
3R	11252588	3R_11252588_SNP [dm3] 3R_15426866_SNP [dm6]	C	T	7.765e^-5	0.887	UTR_5_PRIME CG6118 INTRON CG6118
3L	11925881	3L_11925881_SNP [dm3] 3L_11932781_SNP [dm6]	T	C	7.774e^-5	0.887	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4954401	X_4954401_SNP [dm3] X_5060368_SNP [dm6]	G	T	7.786e^-5	0.887	INTRON CR44833 & 1 other
2L	11406488	2L_11406488_SNP [dm3] 2L_11406488_SNP [dm6]	G	T	7.794e^-5	0.887	INTERGENIC	regulatory region REDfly_CRMs
2L	15814208	2L_15814208_SNP [dm3] 2L_15814208_SNP [dm6]	C	T	7.799e^-5	0.887	INTERGENIC
3L	9226677	3L_9226677_SNP [dm3] 3L_9233577_SNP [dm6]	G	T	7.828e^-5	0.887	INTERGENIC
2L	14545691	2L_14545691_SNP [dm3] 2L_14545691_SNP [dm6]	T	G	7.869e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13038947	3R_13038947_DEL [dm3] 3R_17213225_DEL [dm6]	TGTT	T	7.959e^-5	0.887	INTERGENIC
3L	1363400	3L_1363400_DEL [dm3] 3L_1363400_DEL [dm6]	GGGTG	G	7.964e^-5	0.887	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
3R	10692317	3R_10692317_SNP [dm3] 3R_14866595_SNP [dm6]	C	T	8.009e^-5	0.887	INTRON btsz
3R	2839941	3R_2839941_SNP [dm3] 3R_7014219_SNP [dm6]	T	A	8.019e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12157189	2L_12157189_SNP [dm3] 2L_12157189_SNP [dm6]	A	C	8.073e^-5	0.887	INTRON CG31760
2R	15278468	2R_15278468_SNP [dm3] 2R_19390963_SNP [dm6]	G	A	8.227e^-5	0.887	SYNONYMOUS_CODING CG11257 DOWNSTREAM SdhA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21930491	X_21930491_SNP [dm3] X_22528655_SNP [dm6]	T	C	8.295e^-5	0.887	INTRON CG17600	TF binding site mE1_TFBS_sens
3L	13290636	3L_13290636_SNP [dm3] 3L_13297536_SNP [dm6]	T	C	8.301e^-5	0.887	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45255 EXON CR45253
2L	12157213	2L_12157213_SNP [dm3] 2L_12157213_SNP [dm6]	G	C	8.303e^-5	0.887	INTRON CG31760
X	8926183	X_8926183_SNP [dm3] X_9032150_SNP [dm6]	T	C	8.386e^-5	0.887	INTRON CR43836 & 1 other
X	11390441	X_11390441_SNP [dm3] X_11496408_SNP [dm6]	C	T	8.422e^-5	0.887	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2R	7391046	2R_7391046_SNP [dm3] 2R_11503541_SNP [dm6]	C	G	8.521e^-5	0.887	INTRON inv
3R	11866036	3R_11866036_SNP [dm3] 3R_16040314_SNP [dm6]	G	C	8.523e^-5	0.887	UTR_3_PRIME pnr	TF binding site mE1_TFBS_cad
X	4236924	X_4236924_SNP [dm3] X_4342891_SNP [dm6]	T	A	8.582e^-5	0.887	INTRON norpA
X	12464235	X_12464235_SNP [dm3] X_12570202_SNP [dm6]	G	A	8.651e^-5	0.887	UTR_3_PRIME CG11138	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	8.699e^-5	0.887	INTERGENIC
2L	4472209	2L_4472209_SNP [dm3] 2L_4472209_SNP [dm6]	T	G	8.754e^-5	0.887	INTRON ine
X	2237585	X_2237585_SNP [dm3] X_2343552_SNP [dm6]	T	C	8.961e^-5	0.887	UTR_3_PRIME phl DOWNSTREAM mRpL14	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	17990632	2R_17990632_SNP [dm3] 2R_22103127_SNP [dm6]	T	A	8.985e^-5	0.887	UPSTREAM CG6613 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2879286	2R_2879286_SNP [dm3] 2R_6991781_SNP [dm6]	A	G	9.030e^-5	0.887	UPSTREAM Tsp42Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22609208	3R_22609208_SNP [dm3] 3R_26783486_SNP [dm6]	A	T	9.058e^-5	0.887	UPSTREAM CG42790 DOWNSTREAM CG42789 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	22295295	3R_22295295_SNP [dm3] 3R_26469573_SNP [dm6]	G	A	9.075e^-5	0.887	UTR_3_PRIME CG5455 DOWNSTREAM plum
3R	5651214	3R_5651214_SNP [dm3] 3R_9825492_SNP [dm6]	T	A	9.091e^-5	0.887	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11814723	3L_11814723_SNP [dm3] 3L_11821623_SNP [dm6]	A	G	9.114e^-5	0.887	START_GAINED CG11597 UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	21593255	3R_21593255_SNP [dm3] 3R_25767533_SNP [dm6]	T	A	9.139e^-5	0.887	INTERGENIC
X	9489682	X_9489682_SNP [dm3] X_9595649_SNP [dm6]	C	G	9.142e^-5	0.887	DOWNSTREAM CR45543 INTERGENIC
2R	7512935	2R_7512935_SNP [dm3] 2R_11625430_SNP [dm6]	T	A	9.154e^-5	0.887	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	21444078	3R_21444078_SNP [dm3] 3R_25618356_SNP [dm6]	C	T	9.294e^-5	0.887	UPSTREAM CG5071 INTRON Npl4
3R	21444079	3R_21444079_SNP [dm3] 3R_25618357_SNP [dm6]	T	C	9.294e^-5	0.887	UPSTREAM CG5071 INTRON Npl4
3R	7988098	3R_7988098_SNP [dm3] 3R_12162376_SNP [dm6]	G	T	9.317e^-5	0.887	DOWNSTREAM Cpn INTERGENIC
3R	21592050	3R_21592050_DEL [dm3] 3R_25766328_DEL [dm6]	CA	T	9.334e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15674055	3R_15674055_SNP [dm3] 3R_19848333_SNP [dm6]	T	A	9.347e^-5	0.887	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	9465109	X_9465109_SNP [dm3] X_9571076_SNP [dm6]	C	T	9.358e^-5	0.887	SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
X	11392200	X_11392200_SNP [dm3] X_11498167_SNP [dm6]	T	G	9.377e^-5	0.887	INTRON Drak
2L	14674849	2L_14674849_SNP [dm3] 2L_14674849_SNP [dm6]	C	T	9.394e^-5	0.887	INTRON osp
3L	8151198	3L_8151198_SNP [dm3] 3L_8158098_SNP [dm6]	G	A	9.421e^-5	0.887	INTRON CG42445
3R	12145315	3R_12145315_SNP [dm3] 3R_16319593_SNP [dm6]	C	T	9.438e^-5	0.887	INTRON Sulf1
2R	5696593	2R_5696593_SNP [dm3] 2R_9809088_SNP [dm6]	A	T	9.449e^-5	0.887	INTERGENIC
2L	18946595	2L_18946595_SNP [dm3] 2L_18946595_SNP [dm6]	T	C	9.547e^-5	0.887	DOWNSTREAM CR44740 EXON CR42848	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11178271	3L_11178271_SNP [dm3] 3L_11185171_SNP [dm6]	A	T	9.555e^-5	0.887	INTRON GlcAT-P
2R	19143054	2R_19143054_SNP [dm3] 2R_23255531_SNP [dm6]	A	T	9.565e^-5	0.887	INTERGENIC
2R	18072992	2R_18072992_SNP [dm3] 2R_22185487_SNP [dm6]	G	T	9.567e^-5	0.887	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18072995	2R_18072995_SNP [dm3] 2R_22185490_SNP [dm6]	G	A	9.567e^-5	0.887	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	21089862	3L_21089862_SNP [dm3] 3L_21096762_SNP [dm6]	G	A	9.579e^-5	0.887	INTRON ko
3R	13145321	3R_13145321_SNP [dm3] 3R_17319599_SNP [dm6]	G	A	9.707e^-5	0.887	DOWNSTREAM beat-IIa INTERGENIC
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	9.724e^-5	0.887	INTERGENIC
3L	15471940	3L_15471940_SNP [dm3] 3L_15478840_SNP [dm6]	A	T	9.759e^-5	0.887	INTERGENIC
2L	17465069	2L_17465069_SNP [dm3] 2L_17465069_SNP [dm6]	G	A	9.837e^-5	0.887	INTRON BicD
2R	18467934	2R_18467934_SNP [dm3] 2R_22580429_SNP [dm6]	A	G	9.922e^-5	0.887	INTRON dnr1
X	14062596	X_14062596_SNP [dm3] X_14168563_SNP [dm6]	T	A	1.008e^-4	0.887	INTERGENIC
2R	12160695	2R_12160695_SNP [dm3] 2R_16273190_SNP [dm6]	G	C	1.009e^-4	0.887	SYNONYMOUS_CODING CG33017	TF binding site mE1_TFBS_sens
3R	12146172	3R_12146172_DEL [dm3] 3R_16320450_DEL [dm6]	AC	A	1.010e^-4	0.887	UPSTREAM tRNA:F2:89BC INTRON Sulf1
X	4438549	X_4438549_SNP [dm3] X_4544516_SNP [dm6]	C	A	1.011e^-4	0.887	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7736570	3L_7736570_SNP [dm3] 3L_7743470_SNP [dm6]	T	C	1.012e^-4	0.887	UPSTREAM Snmp2 INTRON CG32373
2R	10437941	2R_10437941_SNP [dm3] 2R_14550436_SNP [dm6]	C	A	1.020e^-4	0.887	INTRON ttv
2L	18692957	2L_18692957_SNP [dm3] 2L_18692957_SNP [dm6]	A	G	1.021e^-4	0.887	INTRON CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5080521	3R_5080521_SNP [dm3] 3R_9254799_SNP [dm6]	A	T	1.025e^-4	0.887	UPSTREAM CG16734 DOWNSTREAM CR16735 INTERGENIC
3L	4387756	3L_4387756_SNP [dm3] 3L_4387756_SNP [dm6]	T	G	1.029e^-4	0.887	INTRON slow
3R	12933316	3R_12933316_SNP [dm3] 3R_17107594_SNP [dm6]	G	A	1.030e^-4	0.887	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1436339	2L_1436339_SNP [dm3] 2L_1436339_SNP [dm6]	G	A	1.039e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1860552	2L_1860552_SNP [dm3] 2L_1860552_SNP [dm6]	C	T	1.043e^-4	0.887	INTRON CG31663
2R	19694795	2R_19694795_SNP [dm3] 2R_23807272_SNP [dm6]	G	A	1.045e^-4	0.887	SYNONYMOUS_CODING Ssrp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	1.048e^-4	0.887	INTERGENIC
3L	10295616	3L_10295616_SNP [dm3] 3L_10302516_SNP [dm6]	C	A	1.050e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	1.052e^-4	0.887	UPSTREAM CG17292 INTRON CG17292
3R	12127274	3R_12127274_SNP [dm3] 3R_16301552_SNP [dm6]	A	G	1.058e^-4	0.887	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17873904	2R_17873904_SNP [dm3] 2R_21986399_SNP [dm6]	C	T	1.060e^-4	0.887	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4237025	X_4237025_SNP [dm3] X_4342992_SNP [dm6]	G	A	1.063e^-4	0.887	INTRON norpA
3L	10298277	3L_10298277_SNP [dm3] 3L_10305177_SNP [dm6]	G	A	1.064e^-4	0.887	INTERGENIC
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	1.071e^-4	0.887	INTERGENIC
2L	17746634	2L_17746634_SNP [dm3] 2L_17746634_SNP [dm6]	T	G	1.075e^-4	0.887	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	1.075e^-4	0.887	INTRON 4EHP
3R	21590443	3R_21590443_DEL [dm3] 3R_25764721_DEL [dm6]	TT	C	1.077e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	1.087e^-4	0.887	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	19142952	2R_19142952_SNP [dm3] 2R_23255429_SNP [dm6]	A	G	1.091e^-4	0.887	INTERGENIC
2L	11390749	2L_11390749_SNP [dm3] 2L_11390749_SNP [dm6]	C	A	1.093e^-4	0.887	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
3R	4151683	3R_4151683_SNP [dm3] 3R_8325961_SNP [dm6]	A	T	1.098e^-4	0.887	DOWNSTREAM CG7443 INTRON Poxm
3R	21593558	3R_21593558_SNP [dm3] 3R_25767836_SNP [dm6]	A	T	1.103e^-4	0.887	INTERGENIC
3R	15674045	3R_15674045_SNP [dm3] 3R_19848323_SNP [dm6]	T	A	1.107e^-4	0.887	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18795171	3R_18795171_SNP [dm3] 3R_22969449_SNP [dm6]	G	A	1.113e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	14062590	X_14062590_SNP [dm3] X_14168557_SNP [dm6]	T	A	1.115e^-4	0.887	INTERGENIC
X	14062019	X_14062019_SNP [dm3] X_14167986_SNP [dm6]	T	C	1.119e^-4	0.887	INTERGENIC
3L	18473886	3L_18473886_SNP [dm3] 3L_18480786_SNP [dm6]	A	C	1.119e^-4	0.887	INTERGENIC
3L	3805693	3L_3805693_SNP [dm3] 3L_3805693_SNP [dm6]	T	A	1.122e^-4	0.887	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17873896	2R_17873896_SNP [dm3] 2R_21986391_SNP [dm6]	T	C	1.122e^-4	0.887	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1362742	3L_1362742_SNP [dm3] 3L_1362742_SNP [dm6]	A	G	1.125e^-4	0.887	INTRON Ptp61F
3L	1689053	3L_1689053_SNP [dm3] 3L_1689053_SNP [dm6]	C	T	1.127e^-4	0.887	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5243349	X_5243349_SNP [dm3] X_5349316_SNP [dm6]	T	C	1.131e^-4	0.887	INTRON SK
2L	8272216	2L_8272216_SNP [dm3] 2L_8272216_SNP [dm6]	C	G	1.132e^-4	0.887	UTR_5_PRIME Btk29A INTRON Btk29A
2L	14244622	2L_14244622_SNP [dm3] 2L_14244622_SNP [dm6]	G	A	1.133e^-4	0.887	INTERGENIC
X	10798115	X_10798115_SNP [dm3] X_10904082_SNP [dm6]	T	C	1.140e^-4	0.887	INTERGENIC
X	4236932	X_4236932_SNP [dm3] X_4342899_SNP [dm6]	T	G	1.141e^-4	0.887	INTRON norpA
2L	16782103	2L_16782103_SNP [dm3] 2L_16782103_SNP [dm6]	T	A	1.147e^-4	0.887	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	1.147e^-4	0.887	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19128335	X_19128335_SNP [dm3] X_19234302_SNP [dm6]	C	G	1.148e^-4	0.887	SYNONYMOUS_CODING CG7884	TF binding site mE1_TFBS_chinmo
2L	15283084	2L_15283084_SNP [dm3] 2L_15283084_SNP [dm6]	A	G	1.167e^-4	0.887	INTERGENIC
2L	7077531	2L_7077531_SNP [dm3] 2L_7077531_SNP [dm6]	A	G	1.168e^-4	0.887	INTRON Pvf2
2R	16774240	2R_16774240_SNP [dm3] 2R_20886735_SNP [dm6]	G	A	1.171e^-4	0.887	SPLICE_SITE_REGION otp INTRON otp
2R	18464748	2R_18464748_SNP [dm3] 2R_22577243_SNP [dm6]	C	T	1.171e^-4	0.887	INTRON dnr1
2L	16782100	2L_16782100_SNP [dm3] 2L_16782100_SNP [dm6]	A	C	1.177e^-4	0.887	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	1.185e^-4	0.887	INTERGENIC
2L	10787054	2L_10787054_SNP [dm3] 2L_10787054_SNP [dm6]	A	G	1.192e^-4	0.887	UPSTREAM CR44582 INTRON CG31869
2R	17990624	2R_17990624_SNP [dm3] 2R_22103119_SNP [dm6]	T	A	1.194e^-4	0.887	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6327143	2R_6327143_SNP [dm3] 2R_10439638_SNP [dm6]	G	C	1.195e^-4	0.887	SPLICE_SITE_REGION Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3L	11182758	3L_11182758_SNP [dm3] 3L_11189658_SNP [dm6]	C	T	1.195e^-4	0.887	INTRON GlcAT-P
3R	1668558	3R_1668558_SNP [dm3] 3R_5842836_SNP [dm6]	C	T	1.230e^-4	0.887	INTRON CG1213
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	1.232e^-4	0.887	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	1.236e^-4	0.887	DOWNSTREAM CR45543 INTERGENIC
2R	7394614	2R_7394614_SNP [dm3] 2R_11507109_SNP [dm6]	T	A	1.242e^-4	0.887	UTR_3_PRIME inv
2L	4083184	2L_4083184_SNP [dm3] 2L_4083184_SNP [dm6]	A	G	1.247e^-4	0.887	INTRON ed
X	3456478	X_3456478_SNP [dm3] X_3562445_SNP [dm6]	G	A	1.249e^-4	0.887	INTRON CG32791 & 1 other
3L	1362701	3L_1362701_SNP [dm3] 3L_1362701_SNP [dm6]	T	A	1.250e^-4	0.887	INTRON Ptp61F
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.252e^-4	0.887	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3L	13395072	3L_13395072_SNP [dm3] 3L_13401972_SNP [dm6]	A	T	1.254e^-4	0.887	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14741082	3R_14741082_SNP [dm3] 3R_18915360_SNP [dm6]	A	G	1.262e^-4	0.887	START_GAINED Xrp1 UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	2785394	2L_2785394_SNP [dm3] 2L_2785394_SNP [dm6]	T	A	1.267e^-4	0.887	UTR_3_PRIME Syt1 INTRON Syt1
3L	6910973	3L_6910973_SNP [dm3] 3L_6917873_SNP [dm6]	T	A	1.267e^-4	0.887	INTERGENIC
2L	11390868	2L_11390868_SNP [dm3] 2L_11390868_SNP [dm6]	C	G	1.268e^-4	0.887	EXON CR43681	regulatory region REDfly_CRMs
2R	725040	2R_725040_SNP [dm3] 2R_4837535_SNP [dm6]	T	G	1.275e^-4	0.887	INTERGENIC
2L	1928454	2L_1928454_SNP [dm3] 2L_1928454_SNP [dm6]	C	T	1.276e^-4	0.887	UTR_5_PRIME CG7337 INTRON CG7337
2L	2266083	2L_2266083_SNP [dm3] 2L_2266083_SNP [dm6]	A	G	1.283e^-4	0.887	UPSTREAM CG34049 INTERGENIC
2L	8713610	2L_8713610_SNP [dm3] 2L_8713610_SNP [dm6]	C	G	1.286e^-4	0.887	INTRON raw
2L	10115000	2L_10115000_SNP [dm3] 2L_10115000_SNP [dm6]	G	A	1.287e^-4	0.887	INTRON CG44153 & 1 other
2L	760097	2L_760097_SNP [dm3] 2L_760097_SNP [dm6]	T	C	1.293e^-4	0.887	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
3L	10290340	3L_10290340_SNP [dm3] 3L_10297240_SNP [dm6]	T	C	1.293e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6997082	2R_6997082_SNP [dm3] 2R_11109577_SNP [dm6]	A	C	1.299e^-4	0.887	INTRON luna
2L	17746568	2L_17746568_SNP [dm3] 2L_17746568_SNP [dm6]	G	C	1.300e^-4	0.887	INTRON CadN	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2R	7512877	2R_7512877_SNP [dm3] 2R_11625372_SNP [dm6]	T	G	1.304e^-4	0.887	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3057443	2L_3057443_SNP [dm3] 2L_3057443_SNP [dm6]	T	C	1.305e^-4	0.887	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15561001	2L_15561001_SNP [dm3] 2L_15561001_SNP [dm6]	C	G	1.309e^-4	0.887	INTRON kek3
2L	16781974	2L_16781974_DEL [dm3] 2L_16781974_DEL [dm6]	GG	A	1.320e^-4	0.887	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2L	15560845	2L_15560845_SNP [dm3] 2L_15560845_SNP [dm6]	T	C	1.324e^-4	0.887	INTRON kek3
3L	10290343	3L_10290343_SNP [dm3] 3L_10297243_SNP [dm6]	T	A	1.328e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24375005	3R_24375005_SNP [dm3] 3R_28549283_SNP [dm6]	T	C	1.329e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4727426	2R_4727426_SNP [dm3] 2R_8839921_SNP [dm6]	T	A	1.330e^-4	0.887	INTRON sns
2L	5612209	2L_5612209_SNP [dm3] 2L_5612209_SNP [dm6]	T	C	1.347e^-4	0.896	INTRON CG14010
2R	12014295	2R_12014295_SNP [dm3] 2R_16126790_SNP [dm6]	G	A	1.358e^-4	0.899	INTRON spin
2L	10884629	2L_10884629_SNP [dm3] 2L_10884629_SNP [dm6]	G	A	1.364e^-4	0.899	INTERGENIC
X	3908390	X_3908390_DEL [dm3] X_4014357_DEL [dm6]	CGTTTTCACC	C	1.365e^-4	0.899	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10798033	X_10798033_SNP [dm3] X_10904000_SNP [dm6]	A	G	1.377e^-4	0.901	INTERGENIC
3L	13395073	3L_13395073_DEL [dm3] 3L_13401973_DEL [dm6]	ATATAGGAGAA...	A	1.378e^-4	0.901	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17990646	2R_17990646_SNP [dm3] 2R_22103141_SNP [dm6]	T	C	1.400e^-4	0.904	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3015782	3L_3015782_SNP [dm3] 3L_3015782_SNP [dm6]	T	G	1.401e^-4	0.904	SYNONYMOUS_CODING CG32488 DOWNSTREAM CG32487
3L	13290752	3L_13290752_SNP [dm3] 3L_13297652_SNP [dm6]	A	G	1.402e^-4	0.904	UPSTREAM Sfp70A4 & 1 other DOWNSTREAM CR45253 EXON CR45255
3R	2818182	3R_2818182_SNP [dm3] 3R_6992460_SNP [dm6]	G	A	1.406e^-4	0.904	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10373017	3L_10373017_SNP [dm3] 3L_10379917_SNP [dm6]	G	A	1.407e^-4	0.904	INTERGENIC
3R	13265935	3R_13265935_SNP [dm3] 3R_17440213_SNP [dm6]	C	T	1.416e^-4	0.907	NON_SYNONYMOUS_CODING CG14331 INTRON CG5873
2R	16915602	2R_16915602_SNP [dm3] 2R_21028097_SNP [dm6]	C	T	1.425e^-4	0.909	INTERGENIC
3L	11119115	3L_11119115_SNP [dm3] 3L_11126015_SNP [dm6]	G	A	1.442e^-4	0.914	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	4856744	X_4856744_SNP [dm3] X_4962711_SNP [dm6]	T	C	1.448e^-4	0.914	INTRON CR44833
3R	6497229	3R_6497229_SNP [dm3] 3R_10671507_SNP [dm6]	G	T	1.448e^-4	0.914	INTERGENIC
2L	11275585	2L_11275585_SNP [dm3] 2L_11275585_SNP [dm6]	C	G	1.453e^-4	0.914	NON_SYNONYMOUS_CODING cana
3L	8314617	3L_8314617_SNP [dm3] 3L_8321517_SNP [dm6]	A	C	1.460e^-4	0.914	INTRON CG13670
2L	11520743	2L_11520743_SNP [dm3] 2L_11520743_SNP [dm6]	G	C	1.463e^-4	0.914	NON_SYNONYMOUS_CODING CG14930 UTR_3_PRIME CG14929 DOWNSTREAM CG4970 & 1 other
2L	4912742	2L_4912742_SNP [dm3] 2L_4912742_SNP [dm6]	G	A	1.467e^-4	0.914	SYNONYMOUS_CODING hoe1 UTR_5_PRIME hoe1
X	4855961	X_4855961_SNP [dm3] X_4961928_SNP [dm6]	T	C	1.474e^-4	0.914	UPSTREAM SIP3 INTRON CR44833
3R	19114450	3R_19114450_SNP [dm3] 3R_23288728_SNP [dm6]	G	A	1.477e^-4	0.914	SYNONYMOUS_CODING CG4434 UPSTREAM CG17083	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	713156	2R_713156_SNP [dm3] 2R_4825651_SNP [dm6]	G	A	1.494e^-4	0.915	INTERGENIC
2L	10115002	2L_10115002_SNP [dm3] 2L_10115002_SNP [dm6]	A	G	1.496e^-4	0.915	INTRON CG44153 & 1 other
2R	6293541	2R_6293541_SNP [dm3] 2R_10406036_SNP [dm6]	T	G	1.500e^-4	0.915	DOWNSTREAM CG12898 INTRON CG42732
3L	10295952	3L_10295952_SNP [dm3] 3L_10302852_SNP [dm6]	T	G	1.502e^-4	0.915	INTERGENIC
2L	13142569	2L_13142569_SNP [dm3] 2L_13142569_SNP [dm6]	T	C	1.503e^-4	0.915	SYNONYMOUS_CODING CG9928 DOWNSTREAM CG16978
2R	19416141	2R_19416141_SNP [dm3] 2R_23528618_SNP [dm6]	A	C	1.509e^-4	0.916	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2L	1686676	2L_1686676_SNP [dm3] 2L_1686676_SNP [dm6]	A	T	1.524e^-4	0.918	INTRON chinmo
X	3459034	X_3459034_SNP [dm3] X_3565001_SNP [dm6]	T	C	1.528e^-4	0.918	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25722128	3R_25722128_SNP [dm3] 3R_29896406_SNP [dm6]	A	G	1.531e^-4	0.918	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20469967	2L_20469967_SNP [dm3] 2L_20469967_SNP [dm6]	G	T	1.532e^-4	0.918	INTRON CR44980
3L	3804595	3L_3804595_SNP [dm3] 3L_3804595_SNP [dm6]	C	T	1.536e^-4	0.918	SYNONYMOUS_CODING ntc INTRON CG32264	TF binding site mE1_TFBS_cad
2L	15098226	2L_15098226_SNP [dm3] 2L_15098226_SNP [dm6]	A	C	1.556e^-4	0.922	INTERGENIC
3L	3804859	3L_3804859_SNP [dm3] 3L_3804859_SNP [dm6]	G	A	1.557e^-4	0.922	INTRON CG32264 & 1 other	TF binding site mE1_TFBS_cad
3R	6869128	3R_6869128_SNP [dm3] 3R_11043406_SNP [dm6]	C	T	1.558e^-4	0.922	INTRON CG34114
2L	3054655	2L_3054655_SNP [dm3] 2L_3054655_SNP [dm6]	A	G	1.570e^-4	0.925	INTRON v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14036826	3R_14036826_SNP [dm3] 3R_18211104_SNP [dm6]	C	A	1.581e^-4	0.925	INTRON CG7985
3L	12379304	3L_12379304_SNP [dm3] 3L_12386204_SNP [dm6]	G	T	1.592e^-4	0.925	INTRON Ncc69
X	4855960	X_4855960_SNP [dm3] X_4961927_SNP [dm6]	A	T	1.594e^-4	0.925	UPSTREAM SIP3 INTRON CR44833
3R	15674052	3R_15674052_DEL [dm3] 3R_19848330_DEL [dm6]	CC	G	1.604e^-4	0.925	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26943417	3R_26943417_SNP [dm3] 3R_31117695_SNP [dm6]	T	G	1.608e^-4	0.925	INTERGENIC
3R	6291088	3R_6291088_SNP [dm3] 3R_10465366_SNP [dm6]	G	A	1.610e^-4	0.925	UPSTREAM CR44955 INTERGENIC
3R	20275243	3R_20275243_SNP [dm3] 3R_24449521_SNP [dm6]	G	A	1.621e^-4	0.925	INTRON nAChRalpha1
3R	24353411	3R_24353411_SNP [dm3] 3R_28527689_SNP [dm6]	T	C	1.624e^-4	0.925	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA
3R	21463346	3R_21463346_SNP [dm3] 3R_25637624_SNP [dm6]	T	C	1.625e^-4	0.925	UPSTREAM jigr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7512927	2R_7512927_SNP [dm3] 2R_11625422_SNP [dm6]	T	G	1.628e^-4	0.925	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15028261	2L_15028261_SNP [dm3] 2L_15028261_SNP [dm6]	A	C	1.629e^-4	0.925	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10290392	3L_10290392_SNP [dm3] 3L_10297292_SNP [dm6]	G	A	1.633e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11390854	2L_11390854_SNP [dm3] 2L_11390854_SNP [dm6]	A	G	1.637e^-4	0.925	SPLICE_SITE_REGION CR43681 INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2L	16782112	2L_16782112_SNP [dm3] 2L_16782112_SNP [dm6]	T	C	1.641e^-4	0.925	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	10290370	3L_10290370_SNP [dm3] 3L_10297270_SNP [dm6]	T	C	1.646e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13414841	2L_13414841_SNP [dm3] 2L_13414841_SNP [dm6]	G	T	1.647e^-4	0.925	UPSTREAM CG42784 & 2 others INTERGENIC
3L	12382332	3L_12382332_SNP [dm3] 3L_12389232_SNP [dm6]	A	T	1.666e^-4	0.925	INTRON Ncc69
3R	14881380	3R_14881380_SNP [dm3] 3R_19055658_SNP [dm6]	C	T	1.666e^-4	0.925	INTRON cdi	TF binding site BDTNP1_TFBS_twi
X	16511027	X_16511027_SNP [dm3] X_16616994_SNP [dm6]	C	T	1.678e^-4	0.925	INTRON CG9782
2R	19242268	2R_19242268_SNP [dm3] 2R_23354745_SNP [dm6]	T	G	1.679e^-4	0.925	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1267572	3L_1267572_SNP [dm3] 3L_1267572_SNP [dm6]	T	C	1.681e^-4	0.925	INTRON CG9134
3R	13145333	3R_13145333_SNP [dm3] 3R_17319611_SNP [dm6]	G	A	1.683e^-4	0.925	DOWNSTREAM beat-IIa INTERGENIC
3R	4859370	3R_4859370_SNP [dm3] 3R_9033648_SNP [dm6]	G	A	1.684e^-4	0.925	UTR_5_PRIME neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	20038760	2L_20038760_SNP [dm3] 2L_20038760_SNP [dm6]	G	A	1.686e^-4	0.925	INTRON sNPF
2L	12157195	2L_12157195_SNP [dm3] 2L_12157195_SNP [dm6]	C	A	1.691e^-4	0.925	INTRON CG31760
3R	5651260	3R_5651260_SNP [dm3] 3R_9825538_SNP [dm6]	A	T	1.697e^-4	0.925	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	5312532	2R_5312532_SNP [dm3] 2R_9425027_SNP [dm6]	T	C	1.708e^-4	0.926	INTRON prel
2R	4132519	2R_4132519_SNP [dm3] 2R_8245014_SNP [dm6]	G	A	1.720e^-4	0.926	UPSTREAM CR44446 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_z
3R	18981909	3R_18981909_SNP [dm3] 3R_23156187_SNP [dm6]	A	G	1.725e^-4	0.926	SYNONYMOUS_CODING unk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22934317	3R_22934317_SNP [dm3] 3R_27108595_SNP [dm6]	T	C	1.736e^-4	0.926	UTR_3_PRIME gb UPSTREAM CR45209
3L	10290373	3L_10290373_SNP [dm3] 3L_10297273_SNP [dm6]	T	G	1.737e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	1113623	3R_1113623_SNP [dm3] 3R_5287901_SNP [dm6]	G	A	1.739e^-4	0.926	UPSTREAM mtd INTRON mtd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4855957	X_4855957_SNP [dm3] X_4961924_SNP [dm6]	G	A	1.743e^-4	0.926	UPSTREAM SIP3 INTRON CR44833
3L	10290256	3L_10290256_SNP [dm3] 3L_10297156_SNP [dm6]	G	T	1.745e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2769384	X_2769384_DEL [dm3] X_2875351_DEL [dm6]	AACTTGGA	A	1.755e^-4	0.926	DOWNSTREAM CG14417 INTRON kirre
X	11585021	X_11585021_SNP [dm3] X_11690988_SNP [dm6]	G	T	1.759e^-4	0.926	NON_SYNONYMOUS_CODING bif UTR_3_PRIME bif INTRON bif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3805685	3L_3805685_INS [dm3] 3L_3805685_INS [dm6]	G	GCCAG	1.768e^-4	0.926	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10297154	3L_10297154_SNP [dm3] 3L_10304054_SNP [dm6]	G	A	1.770e^-4	0.926	INTERGENIC
3L	10290349	3L_10290349_DEL [dm3] 3L_10297249_DEL [dm6]	TTAGTCATAAAGC...	T	1.774e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	5650568	3R_5650568_SNP [dm3] 3R_9824846_SNP [dm6]	G	T	1.784e^-4	0.926	EXON CR42858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6854684	3R_6854684_SNP [dm3] 3R_11028962_SNP [dm6]	T	C	1.786e^-4	0.926	INTRON CG34114
3L	10290384	3L_10290384_SNP [dm3] 3L_10297284_SNP [dm6]	T	A	1.788e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25094685	3R_25094685_SNP [dm3] 3R_29268963_SNP [dm6]	G	C	1.793e^-4	0.926	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13395151	3L_13395151_SNP [dm3] 3L_13402051_SNP [dm6]	G	A	1.796e^-4	0.926	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	4856057	X_4856057_SNP [dm3] X_4962024_SNP [dm6]	A	T	1.799e^-4	0.926	UPSTREAM SIP3 INTRON CR44833
3L	17327035	3L_17327035_DEL [dm3] 3L_17333935_DEL [dm6]	AGA	A	1.809e^-4	0.926	UPSTREAM CR44563 INTERGENIC
2R	20223516	2R_20223516_SNP [dm3] 2R_24335993_SNP [dm6]	A	T	1.810e^-4	0.926	UPSTREAM CR44282 INTERGENIC
3R	1106686	3R_1106686_SNP [dm3] 3R_5280964_SNP [dm6]	C	T	1.829e^-4	0.926	INTRON mtd
3L	12248993	3L_12248993_SNP [dm3] 3L_12255893_SNP [dm6]	C	A	1.834e^-4	0.926	INTRON app	TF binding site mE1_TFBS_cad
3R	19034780	3R_19034780_SNP [dm3] 3R_23209058_SNP [dm6]	C	T	1.853e^-4	0.926	INTRON cnc
2R	12803617	2R_12803617_SNP [dm3] 2R_16916112_SNP [dm6]	C	T	1.858e^-4	0.926	INTERGENIC
3L	14834697	3L_14834697_SNP [dm3] 3L_14841597_SNP [dm6]	T	G	1.877e^-4	0.926	INTRON CG17839
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	1.877e^-4	0.926	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25719407	3R_25719407_SNP [dm3] 3R_29893685_SNP [dm6]	G	T	1.878e^-4	0.926	INTRON CG31038
3R	11895322	3R_11895322_SNP [dm3] 3R_16069600_SNP [dm6]	G	A	1.880e^-4	0.926	DOWNSTREAM Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad
3L	4393043	3L_4393043_SNP [dm3] 3L_4393043_SNP [dm6]	T	G	1.886e^-4	0.926	INTRON slow
3L	10290692	3L_10290692_SNP [dm3] 3L_10297592_SNP [dm6]	A	G	1.887e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	6442536	3R_6442536_INS [dm3] 3R_10616814_INS [dm6]	A	AA	1.898e^-4	0.926	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18622087	3R_18622087_SNP [dm3] 3R_22796365_SNP [dm6]	C	T	1.900e^-4	0.926	INTERGENIC
3R	2672894	3R_2672894_SNP [dm3] 3R_6847172_SNP [dm6]	C	A	1.902e^-4	0.926	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8343766	3R_8343766_SNP [dm3] 3R_12518044_SNP [dm6]	G	A	1.905e^-4	0.926	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	11925778	3L_11925778_INS [dm3] 3L_11932678_INS [dm6]	G	GTTAGTATCAG...	1.907e^-4	0.926	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13395152	3L_13395152_SNP [dm3] 3L_13402052_SNP [dm6]	A	G	1.910e^-4	0.926	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	1.912e^-4	0.926	INTERGENIC
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	1.920e^-4	0.926	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18701310	2R_18701310_SNP [dm3] 2R_22813805_SNP [dm6]	C	T	1.923e^-4	0.926	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo
3R	22294192	3R_22294192_SNP [dm3] 3R_26468470_SNP [dm6]	C	T	1.924e^-4	0.926	SYNONYMOUS_CODING CG5455
2L	15093259	2L_15093259_SNP [dm3] 2L_15093259_SNP [dm6]	C	A	1.924e^-4	0.926	INTRON CG15270
2L	15044887	2L_15044887_INS [dm3] 2L_15044887_INS [dm6]	T	TAT	1.926e^-4	0.926	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs
2R	9052465	2R_9052465_SNP [dm3] 2R_13164960_SNP [dm6]	A	G	1.926e^-4	0.926	INTRON GLaz
2R	11803456	2R_11803456_SNP [dm3] 2R_15915951_SNP [dm6]	C	A	1.929e^-4	0.926	UPSTREAM CR44373 INTRON sli
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	1.931e^-4	0.926	DOWNSTREAM CG18109 INTERGENIC
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	1.950e^-4	0.926	INTERGENIC
2L	11452253	2L_11452253_SNP [dm3] 2L_11452253_SNP [dm6]	A	T	1.951e^-4	0.926	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6288328	3R_6288328_SNP [dm3] 3R_10462606_SNP [dm6]	A	T	1.954e^-4	0.926	DOWNSTREAM CR44939 EXON CR44955
2L	11390787	2L_11390787_SNP [dm3] 2L_11390787_SNP [dm6]	T	C	1.954e^-4	0.926	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
3R	25282171	3R_25282171_SNP [dm3] 3R_29456449_SNP [dm6]	T	A	1.955e^-4	0.926	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17559930	3R_17559930_SNP [dm3] 3R_21734208_SNP [dm6]	G	A	1.962e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	1.962e^-4	0.926	UTR_3_PRIME Ack DOWNSTREAM Chd64
3R	6863579	3R_6863579_INS [dm3] 3R_11037857_INS [dm6]	G	GAGA	1.966e^-4	0.926	INTRON CG34114
3L	3325808	3L_3325808_SNP [dm3] 3L_3325808_SNP [dm6]	G	A	1.971e^-4	0.926	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10633552	3R_10633552_SNP [dm3] 3R_14807830_SNP [dm6]	G	T	1.974e^-4	0.926	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	27439947	3R_27439947_SNP [dm3] 3R_31614225_SNP [dm6]	C	G	1.985e^-4	0.928	SPLICE_SITE_REGION Med INTRON Med	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10295829	3L_10295829_SNP [dm3] 3L_10302729_SNP [dm6]	A	T	1.993e^-4	0.929	INTERGENIC
2L	16380685	2L_16380685_SNP [dm3] 2L_16380685_SNP [dm6]	T	A	2.024e^-4	0.929	INTERGENIC
3R	21593339	3R_21593339_SNP [dm3] 3R_25767617_SNP [dm6]	G	A	2.025e^-4	0.929	INTERGENIC
2L	15541976	2L_15541976_SNP [dm3] 2L_15541976_SNP [dm6]	A	G	2.047e^-4	0.929	INTERGENIC
3R	22295002	3R_22295002_SNP [dm3] 3R_26469280_SNP [dm6]	G	A	2.047e^-4	0.929	DOWNSTREAM plum INTRON CG5455
2L	6588320	2L_6588320_SNP [dm3] 2L_6588320_SNP [dm6]	C	A	2.055e^-4	0.929	INTRON CG11319
3R	10231658	3R_10231658_SNP [dm3] 3R_14405936_SNP [dm6]	T	A	2.061e^-4	0.929	UPSTREAM cv-c INTRON cv-c
2L	1928231	2L_1928231_SNP [dm3] 2L_1928231_SNP [dm6]	A	G	2.064e^-4	0.929	UTR_5_PRIME CG7337 INTRON CG7337
3L	1270909	3L_1270909_SNP [dm3] 3L_1270909_SNP [dm6]	A	C	2.073e^-4	0.929	INTRON CG9134
3L	11177828	3L_11177828_SNP [dm3] 3L_11184728_SNP [dm6]	A	T	2.074e^-4	0.929	INTRON GlcAT-P
3L	7298516	3L_7298516_SNP [dm3] 3L_7305416_SNP [dm6]	T	C	2.077e^-4	0.929	INTRON unc-13-4A
3R	6286541	3R_6286541_SNP [dm3] 3R_10460819_SNP [dm6]	C	T	2.080e^-4	0.929	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6449187	3L_6449187_SNP [dm3] 3L_6456087_SNP [dm6]	T	C	2.084e^-4	0.929	INTRON CG42747
3R	20275217	3R_20275217_SNP [dm3] 3R_24449495_SNP [dm6]	A	G	2.086e^-4	0.929	INTRON nAChRalpha1
3R	6548034	3R_6548034_SNP [dm3] 3R_10722312_SNP [dm6]	T	C	2.097e^-4	0.929	INTERGENIC
2L	6588332	2L_6588332_SNP [dm3] 2L_6588332_SNP [dm6]	A	T	2.100e^-4	0.929	INTRON CG11319
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	2.100e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12132918	3R_12132918_SNP [dm3] 3R_16307196_SNP [dm6]	G	T	2.112e^-4	0.929	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13130821	3R_13130821_SNP [dm3] 3R_17305099_SNP [dm6]	G	T	2.130e^-4	0.929	INTERGENIC
2R	3337920	2R_3337920_SNP [dm3] 2R_7450415_SNP [dm6]	C	G	2.135e^-4	0.929	DOWNSTREAM CG11125 INTRON fa2h	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15932458	2L_15932458_SNP [dm3] 2L_15932458_SNP [dm6]	T	C	2.135e^-4	0.929	INTRON beat-Ib
2L	20622105	2L_20622105_SNP [dm3] 2L_20622105_SNP [dm6]	T	C	2.157e^-4	0.929	INTRON CR44909
3R	11861897	3R_11861897_SNP [dm3] 3R_16036175_SNP [dm6]	A	T	2.160e^-4	0.929	INTRON pnr
2R	11510110	2R_11510110_SNP [dm3] 2R_15622605_SNP [dm6]	T	C	2.161e^-4	0.929	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5612207	2L_5612207_SNP [dm3] 2L_5612207_SNP [dm6]	T	C	2.200e^-4	0.929	INTRON CG14010
3L	856116	3L_856116_SNP [dm3] 3L_856116_SNP [dm6]	G	C	2.203e^-4	0.929	INTRON dpr20
X	17268338	X_17268338_SNP [dm3] X_17374305_SNP [dm6]	T	A	2.205e^-4	0.929	INTERGENIC
3L	12382624	3L_12382624_INS [dm3] 3L_12389524_INS [dm6]	C	CA	2.212e^-4	0.929	INTRON Ncc69
X	19301541	X_19301541_SNP [dm3] X_19407508_SNP [dm6]	T	C	2.212e^-4	0.929	INTRON kek5
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	2.213e^-4	0.929	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1007624	3L_1007624_SNP [dm3] 3L_1007624_SNP [dm6]	C	T	2.214e^-4	0.929	SYNONYMOUS_CODING trio INTRON trio	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16919878	2R_16919878_INS [dm3] 2R_21032373_INS [dm6]	C	CAGCC	2.222e^-4	0.929	INTERGENIC
2R	10437889	2R_10437889_SNP [dm3] 2R_14550384_SNP [dm6]	G	A	2.235e^-4	0.929	INTRON ttv
X	3067179	X_3067179_SNP [dm3] X_3173146_SNP [dm6]	T	C	2.239e^-4	0.929	UPSTREAM CG18508 DOWNSTREAM N & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	2598507	X_2598507_DEL [dm3] X_2704474_DEL [dm6]	TTTGGGGG	T	2.248e^-4	0.929	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	18379482	X_18379482_SNP [dm3] X_18485449_SNP [dm6]	G	A	2.259e^-4	0.929	SYNONYMOUS_CODING psh	TF binding site mE1_TFBS_sens
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	2.259e^-4	0.929	INTRON GlcAT-P
3R	5080522	3R_5080522_SNP [dm3] 3R_9254800_SNP [dm6]	T	A	2.260e^-4	0.929	UPSTREAM CG16734 DOWNSTREAM CR16735 INTERGENIC
2R	8104836	2R_8104836_SNP [dm3] 2R_12217331_SNP [dm6]	T	G	2.281e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
X	8374416	X_8374416_SNP [dm3] X_8480383_SNP [dm6]	A	C	2.288e^-4	0.929	UTR_3_PRIME Cp36 INTRON CG33223
2R	17450590	2R_17450590_SNP [dm3] 2R_21563085_SNP [dm6]	G	C	2.297e^-4	0.929	INTRON CG10440
3L	8725521	3L_8725521_SNP [dm3] 3L_8732421_SNP [dm6]	G	T	2.301e^-4	0.929	DOWNSTREAM Prm INTRON Cp16
2L	2301530	2L_2301530_SNP [dm3] 2L_2301530_SNP [dm6]	T	A	2.307e^-4	0.929	DOWNSTREAM CG31949 INTERGENIC
3L	3805592	3L_3805592_SNP [dm3] 3L_3805592_SNP [dm6]	G	T	2.312e^-4	0.929	INTRON CG32264 & 1 other
3R	25115892	3R_25115892_INS [dm3] 3R_29290170_INS [dm6]	A	AGTTATCACTTCTTTGGA...	2.317e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	27416602	3R_27416602_SNP [dm3] 3R_31590880_SNP [dm6]	G	C	2.326e^-4	0.929	UPSTREAM CR45190 DOWNSTREAM CG1635 INTRON CG1638
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	2.328e^-4	0.929	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3L	8701753	3L_8701753_SNP [dm3] 3L_8708653_SNP [dm6]	G	A	2.332e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
X	20045357	X_20045357_SNP [dm3] X_20151324_SNP [dm6]	A	C	2.332e^-4	0.929	INTRON CG9572
2R	1327393	2R_1327393_SNP [dm3] 2R_5439888_SNP [dm6]	C	A	2.333e^-4	0.929	INTRON laccase2
2R	4075209	2R_4075209_SNP [dm3] 2R_8187704_SNP [dm6]	A	C	2.346e^-4	0.929	INTRON LRP1
2L	12594887	2L_12594887_SNP [dm3] 2L_12594887_SNP [dm6]	G	A	2.363e^-4	0.929	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12132915	3R_12132915_SNP [dm3] 3R_16307193_SNP [dm6]	T	G	2.365e^-4	0.929	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15069630	3R_15069630_SNP [dm3] 3R_19243908_SNP [dm6]	A	C	2.372e^-4	0.929	INTRON unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10668731	3R_10668731_SNP [dm3] 3R_14843009_SNP [dm6]	G	A	2.376e^-4	0.929	INTRON btsz
3L	19686820	3L_19686820_SNP [dm3] 3L_19693720_SNP [dm6]	G	A	2.379e^-4	0.929	INTRON verm
3R	14741100	3R_14741100_SNP [dm3] 3R_18915378_SNP [dm6]	A	T	2.383e^-4	0.929	UTR_5_PRIME Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	12146557	3R_12146557_SNP [dm3] 3R_16320835_SNP [dm6]	T	A	2.394e^-4	0.929	UPSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
3R	9956982	3R_9956982_SNP [dm3] 3R_14131260_SNP [dm6]	A	T	2.395e^-4	0.929	INTRON CG14356	TF binding site mE1_TFBS_cad
X	17708929	X_17708929_SNP [dm3] X_17814896_SNP [dm6]	T	C	2.400e^-4	0.929	DOWNSTREAM OdsH INTERGENIC
3L	4387669	3L_4387669_SNP [dm3] 3L_4387669_SNP [dm6]	G	A	2.407e^-4	0.929	INTRON slow
X	12781633	X_12781633_SNP [dm3] X_12887600_SNP [dm6]	C	A	2.407e^-4	0.929	INTRON Pde9
X	4235550	X_4235550_SNP [dm3] X_4341517_SNP [dm6]	C	T	2.437e^-4	0.929	INTRON norpA
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.439e^-4	0.929	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	2.442e^-4	0.929	DOWNSTREAM Cpn INTERGENIC
2L	1313835	2L_1313835_SNP [dm3] 2L_1313835_SNP [dm6]	A	G	2.446e^-4	0.929	INTERGENIC
2L	4170950	2L_4170950_SNP [dm3] 2L_4170950_SNP [dm6]	G	A	2.455e^-4	0.929	INTERGENIC
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	2.461e^-4	0.929	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20079974	2R_20079974_SNP [dm3] 2R_24192451_SNP [dm6]	C	T	2.462e^-4	0.929	SYNONYMOUS_CODING ocm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10634068	3R_10634068_SNP [dm3] 3R_14808346_SNP [dm6]	T	C	2.471e^-4	0.929	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13395469	3L_13395469_SNP [dm3] 3L_13402369_SNP [dm6]	G	T	2.479e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	8177634	X_8177634_SNP [dm3] X_8283601_SNP [dm6]	T	C	2.479e^-4	0.929	INTRON nAChRalpha3
2R	2876729	2R_2876729_SNP [dm3] 2R_6989224_SNP [dm6]	A	T	2.480e^-4	0.929	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
X	21932957	X_21932957_SNP [dm3] X_22531121_SNP [dm6]	T	C	2.493e^-4	0.929	SYNONYMOUS_CODING S6kII INTRON CG17600	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	2.505e^-4	0.929	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6443034	3R_6443034_SNP [dm3] 3R_10617312_SNP [dm6]	C	A	2.509e^-4	0.929	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9929785	2R_9929785_SNP [dm3] 2R_14042280_SNP [dm6]	T	A	2.513e^-4	0.929	INTRON mam
3L	12382618	3L_12382618_SNP [dm3] 3L_12389518_SNP [dm6]	A	G	2.517e^-4	0.929	INTRON Ncc69
3L	1270910	3L_1270910_SNP [dm3] 3L_1270910_SNP [dm6]	T	G	2.519e^-4	0.929	INTRON CG9134
X	14063784	X_14063784_SNP [dm3] X_14169751_SNP [dm6]	C	T	2.525e^-4	0.929	NON_SYNONYMOUS_CODING CG12480
3L	10300176	3L_10300176_SNP [dm3] 3L_10307076_SNP [dm6]	G	C	2.525e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18983627	3R_18983627_SNP [dm3] 3R_23157905_SNP [dm6]	A	T	2.528e^-4	0.929	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9391563	2R_9391563_SNP [dm3] 2R_13504058_SNP [dm6]	A	T	2.528e^-4	0.929	SYNONYMOUS_CODING mars	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4236642	X_4236642_SNP [dm3] X_4342609_SNP [dm6]	G	T	2.532e^-4	0.929	INTRON norpA
3L	3830421	3L_3830421_SNP [dm3] 3L_3830421_SNP [dm6]	A	C	2.534e^-4	0.929	INTRON enc
X	8408285	X_8408285_SNP [dm3] X_8514252_SNP [dm6]	G	T	2.539e^-4	0.929	INTRON CG33181
3R	18333329	3R_18333329_INS [dm3] 3R_22507607_INS [dm6]	C	TTTG	2.542e^-4	0.929	INTRON Octbeta1R
X	9489591	X_9489591_SNP [dm3] X_9595558_SNP [dm6]	A	T	2.549e^-4	0.929	DOWNSTREAM CR45543 INTERGENIC
3R	22299160	3R_22299160_SNP [dm3] 3R_26473438_SNP [dm6]	C	T	2.549e^-4	0.929	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24974852	3R_24974852_SNP [dm3] 3R_29149130_SNP [dm6]	T	C	2.567e^-4	0.929	SYNONYMOUS_CODING Pglym78 UPSTREAM CG11882 DOWNSTREAM ligatin	TF binding site mE1_TFBS_chinmo
3L	16739132	3L_16739132_SNP [dm3] 3L_16746032_SNP [dm6]	G	A	2.577e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	15674034	3R_15674034_SNP [dm3] 3R_19848312_SNP [dm6]	T	C	2.581e^-4	0.929	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11392750	X_11392750_SNP [dm3] X_11498717_SNP [dm6]	C	T	2.582e^-4	0.929	INTRON Drak
2L	10742244	2L_10742244_SNP [dm3] 2L_10742244_SNP [dm6]	C	G	2.592e^-4	0.929	SYNONYMOUS_CODING CG6729 DOWNSTREAM mir-4970	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10295733	3L_10295733_SNP [dm3] 3L_10302633_SNP [dm6]	T	A	2.593e^-4	0.929	INTERGENIC
3R	12134608	3R_12134608_SNP [dm3] 3R_16308886_SNP [dm6]	C	T	2.606e^-4	0.929	DOWNSTREAM Zip89B INTERGENIC
3R	5441431	3R_5441431_SNP [dm3] 3R_9615709_SNP [dm6]	G	C	2.620e^-4	0.929	INTRON CG8312	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	12146124	3R_12146124_INS [dm3] 3R_16320402_INS [dm6]	G	GCTCTG	2.630e^-4	0.929	UPSTREAM tRNA:F2:89BC INTRON Sulf1
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	2.631e^-4	0.929	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	10290211	3L_10290211_SNP [dm3] 3L_10297111_SNP [dm6]	G	C	2.631e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10290217	3L_10290217_SNP [dm3] 3L_10297117_SNP [dm6]	G	C	2.631e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	12736831	3R_12736831_SNP [dm3] 3R_16911109_SNP [dm6]	G	A	2.632e^-4	0.929	INTRON iab-8
3R	20963250	3R_20963250_SNP [dm3] 3R_25137528_SNP [dm6]	G	C	2.633e^-4	0.929	UPSTREAM danr DOWNSTREAM Bili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17151972	2R_17151972_SNP [dm3] 2R_21264467_SNP [dm6]	C	T	2.636e^-4	0.929	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3R	22935331	3R_22935331_SNP [dm3] 3R_27109609_SNP [dm6]	A	T	2.636e^-4	0.929	INTRON gb EXON CR45209
2R	18464433	2R_18464433_SNP [dm3] 2R_22576928_SNP [dm6]	G	T	2.645e^-4	0.929	INTRON dnr1
2L	14012278	2L_14012278_SNP [dm3] 2L_14012278_SNP [dm6]	T	C	2.646e^-4	0.929	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_inv
3L	6058847	3L_6058847_SNP [dm3] 3L_6065747_SNP [dm6]	G	A	2.650e^-4	0.929	UPSTREAM CG42269 INTERGENIC
3R	6418761	3R_6418761_SNP [dm3] 3R_10593039_SNP [dm6]	G	T	2.651e^-4	0.929	INTRON hth	TF binding site mE1_TFBS_cad
X	5243364	X_5243364_DEL [dm3] X_5349331_DEL [dm6]	TACAATTGTAACTTTAACAA...	T	2.662e^-4	0.929	INTRON SK
2R	7512881	2R_7512881_SNP [dm3] 2R_11625376_SNP [dm6]	T	A	2.671e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	2.674e^-4	0.929	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
3R	11898155	3R_11898155_SNP [dm3] 3R_16072433_SNP [dm6]	C	T	2.676e^-4	0.929	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24198412	3R_24198412_SNP [dm3] 3R_28372690_SNP [dm6]	A	G	2.676e^-4	0.929	INTERGENIC
2R	7512905	2R_7512905_SNP [dm3] 2R_11625400_SNP [dm6]	T	G	2.678e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7379418	2R_7379418_SNP [dm3] 2R_11491913_SNP [dm6]	C	T	2.678e^-4	0.929	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19274606	X_19274606_SNP [dm3] X_19380573_SNP [dm6]	A	G	2.681e^-4	0.929	INTRON kek5
3R	10634085	3R_10634085_SNP [dm3] 3R_14808363_SNP [dm6]	C	T	2.684e^-4	0.929	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10634091	3R_10634091_SNP [dm3] 3R_14808369_SNP [dm6]	G	A	2.684e^-4	0.929	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19434107	2R_19434107_SNP [dm3] 2R_23546584_SNP [dm6]	G	A	2.695e^-4	0.929	INTRON wmd	TF binding site BDTNP1_TFBS_dl
2R	7392225	2R_7392225_SNP [dm3] 2R_11504720_SNP [dm6]	A	C	2.704e^-4	0.929	INTRON inv
2R	17592502	2R_17592502_SNP [dm3] 2R_21704997_SNP [dm6]	A	C	2.704e^-4	0.929	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10300223	3L_10300223_SNP [dm3] 3L_10307123_SNP [dm6]	C	T	2.716e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18720568	2L_18720568_SNP [dm3] 2L_18720568_SNP [dm6]	A	T	2.730e^-4	0.929	INTRON CG10348
X	18886540	X_18886540_SNP [dm3] X_18992507_SNP [dm6]	A	G	2.731e^-4	0.929	INTRON CG43759
3L	18804871	3L_18804871_INS [dm3] 3L_18811771_INS [dm6]	C	CTTT	2.737e^-4	0.929	INTRON CG14073
2L	3520518	2L_3520518_SNP [dm3] 2L_3520518_SNP [dm6]	C	T	2.752e^-4	0.929	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
3L	1870196	3L_1870196_SNP [dm3] 3L_1870196_SNP [dm6]	C	T	2.755e^-4	0.929	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1327397	2R_1327397_SNP [dm3] 2R_5439892_SNP [dm6]	A	G	2.758e^-4	0.929	INTRON laccase2
3R	5437039	3R_5437039_SNP [dm3] 3R_9611317_SNP [dm6]	A	T	2.767e^-4	0.929	INTRON CG8312	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15245594	2L_15245594_SNP [dm3] 2L_15245594_SNP [dm6]	G	A	2.769e^-4	0.929	SYNONYMOUS_CODING ZnT35C INTRON ZnT35C	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12328589	2L_12328589_SNP [dm3] 2L_12328589_SNP [dm6]	G	A	2.771e^-4	0.929	INTERGENIC
3L	1362694	3L_1362694_SNP [dm3] 3L_1362694_SNP [dm6]	G	A	2.784e^-4	0.929	INTRON Ptp61F
2R	4383278	2R_4383278_SNP [dm3] 2R_8495773_SNP [dm6]	C	T	2.794e^-4	0.929	INTRON mtt
3R	20275221	3R_20275221_SNP [dm3] 3R_24449499_SNP [dm6]	G	A	2.800e^-4	0.929	INTRON nAChRalpha1
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	2.803e^-4	0.929	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	7512910	2R_7512910_SNP [dm3] 2R_11625405_SNP [dm6]	G	T	2.812e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512932	2R_7512932_SNP [dm3] 2R_11625427_SNP [dm6]	T	C	2.817e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	2.827e^-4	0.929	INTERGENIC
2L	15989689	2L_15989689_SNP [dm3] 2L_15989689_SNP [dm6]	A	C	2.831e^-4	0.929	UPSTREAM CR43412 INTERGENIC
3R	5103338	3R_5103338_SNP [dm3] 3R_9277616_SNP [dm6]	G	A	2.838e^-4	0.929	INTERGENIC
3L	10295993	3L_10295993_SNP [dm3] 3L_10302893_SNP [dm6]	G	A	2.842e^-4	0.929	INTERGENIC
X	5034832	X_5034832_SNP [dm3] X_5140799_SNP [dm6]	G	C	2.843e^-4	0.929	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2R	3648947	2R_3648947_SNP [dm3] 2R_7761442_SNP [dm6]	T	C	2.846e^-4	0.929	INTRON CG30497 & 1 other
3R	25078765	3R_25078765_SNP [dm3] 3R_29253043_SNP [dm6]	G	A	2.856e^-4	0.929	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	4135354	2L_4135354_SNP [dm3] 2L_4135354_SNP [dm6]	C	T	2.858e^-4	0.929	INTERGENIC
3L	12357247	3L_12357247_SNP [dm3] 3L_12364147_SNP [dm6]	T	A	2.861e^-4	0.929	INTERGENIC
3R	6290995	3R_6290995_SNP [dm3] 3R_10465273_SNP [dm6]	G	C	2.873e^-4	0.929	UPSTREAM CR44955 INTERGENIC
3R	6288338	3R_6288338_INS [dm3] 3R_10462616_INS [dm6]	A	ATC	2.874e^-4	0.929	DOWNSTREAM CR44939 EXON CR44955
3R	7765085	3R_7765085_SNP [dm3] 3R_11939363_SNP [dm6]	T	C	2.879e^-4	0.929	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15985891	2L_15985891_SNP [dm3] 2L_15985891_SNP [dm6]	T	G	2.883e^-4	0.929	INTERGENIC
X	8177678	X_8177678_SNP [dm3] X_8283645_SNP [dm6]	A	G	2.888e^-4	0.929	INTRON nAChRalpha3
X	8177651	X_8177651_SNP [dm3] X_8283618_SNP [dm6]	C	G	2.889e^-4	0.929	INTRON nAChRalpha3
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	2.890e^-4	0.929	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15120351	2R_15120351_SNP [dm3] 2R_19232846_SNP [dm6]	A	G	2.892e^-4	0.929	INTRON cora	TF binding site mE1_TFBS_HSA
2L	3057437	2L_3057437_SNP [dm3] 2L_3057437_SNP [dm6]	T	A	2.913e^-4	0.929	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6507192	3L_6507192_SNP [dm3] 3L_6514092_SNP [dm6]	G	A	2.915e^-4	0.929	INTRON sfl
X	8302665	X_8302665_SNP [dm3] X_8408632_SNP [dm6]	C	G	2.917e^-4	0.929	UTR_3_PRIME lawc UPSTREAM Trf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9974029	2R_9974029_SNP [dm3] 2R_14086524_SNP [dm6]	G	T	2.919e^-4	0.929	INTRON Prosap
2R	17446819	2R_17446819_SNP [dm3] 2R_21559314_SNP [dm6]	G	C	2.921e^-4	0.929	UTR_3_PRIME Egfr DOWNSTREAM CG10440	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11302130	2R_11302130_SNP [dm3] 2R_15414625_SNP [dm6]	A	T	2.923e^-4	0.929	INTRON CG43729
2L	4910823	2L_4910823_SNP [dm3] 2L_4910823_SNP [dm6]	A	G	2.925e^-4	0.929	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7014866	3R_7014866_SNP [dm3] 3R_11189144_SNP [dm6]	C	G	2.950e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18290414	3L_18290414_SNP [dm3] 3L_18297314_SNP [dm6]	G	A	2.952e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6995715	2R_6995715_SNP [dm3] 2R_11108210_SNP [dm6]	G	C	2.954e^-4	0.929	INTRON luna	TF binding site mE1_TFBS_Trl
3R	13636077	3R_13636077_SNP [dm3] 3R_17810355_SNP [dm6]	C	T	2.956e^-4	0.929	SYNONYMOUS_CODING CG18012 UTR_3_PRIME CG18012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10295928	3L_10295928_SNP [dm3] 3L_10302828_SNP [dm6]	G	C	2.963e^-4	0.929	INTERGENIC
3R	6997647	3R_6997647_SNP [dm3] 3R_11171925_SNP [dm6]	C	A	2.969e^-4	0.929	SYNONYMOUS_CODING Ugt35a	TF binding site mE1_TFBS_HSA
2R	13707956	2R_13707956_SNP [dm3] 2R_17820451_SNP [dm6]	T	C	2.974e^-4	0.929	INTRON grh	transposable element FlyBase
3L	18198009	3L_18198009_SNP [dm3] 3L_18204909_SNP [dm6]	T	A	2.991e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13132032	3R_13132032_DEL [dm3] 3R_17306310_DEL [dm6]	CCAAA	C	3.010e^-4	0.929	INTERGENIC
2L	13414813	2L_13414813_SNP [dm3] 2L_13414813_SNP [dm6]	A	T	3.010e^-4	0.929	UPSTREAM CG42784 & 2 others INTERGENIC
3R	10679773	3R_10679773_SNP [dm3] 3R_14854051_SNP [dm6]	G	C	3.013e^-4	0.929	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5857202	3L_5857202_SNP [dm3] 3L_5864102_SNP [dm6]	C	T	3.020e^-4	0.929	INTERGENIC
2L	1860550	2L_1860550_SNP [dm3] 2L_1860550_SNP [dm6]	T	G	3.022e^-4	0.929	INTRON CG31663
3R	13072530	3R_13072530_SNP [dm3] 3R_17246808_SNP [dm6]	G	T	3.025e^-4	0.929	INTRON beat-IIb
2R	7512895	2R_7512895_SNP [dm3] 2R_11625390_SNP [dm6]	G	T	3.026e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	3.028e^-4	0.929	DOWNSTREAM PpN58A INTRON Fili
3L	7465285	3L_7465285_SNP [dm3] 3L_7472185_SNP [dm6]	G	T	3.032e^-4	0.929	SYNONYMOUS_CODING CG8541	TF binding site mE1_TFBS_cad
2L	14674945	2L_14674945_SNP [dm3] 2L_14674945_SNP [dm6]	G	A	3.035e^-4	0.929	INTRON osp
3R	13072522	3R_13072522_SNP [dm3] 3R_17246800_SNP [dm6]	A	G	3.040e^-4	0.929	INTRON beat-IIb
2R	7457254	2R_7457254_SNP [dm3] 2R_11569749_SNP [dm6]	A	C	3.054e^-4	0.929	INTERGENIC
2L	10095782	2L_10095782_SNP [dm3] 2L_10095782_SNP [dm6]	C	A	3.058e^-4	0.929	INTRON CG44153 & 1 other
3R	15124599	3R_15124599_SNP [dm3] 3R_19298877_SNP [dm6]	G	C	3.062e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1940492	3R_1940492_SNP [dm3] 3R_6114770_SNP [dm6]	C	T	3.066e^-4	0.929	INTERGENIC
2R	15120327	2R_15120327_SNP [dm3] 2R_19232822_SNP [dm6]	A	C	3.071e^-4	0.929	INTRON cora	TF binding site mE1_TFBS_HSA
3R	22640043	3R_22640043_SNP [dm3] 3R_26814321_SNP [dm6]	T	A	3.081e^-4	0.929	INTRON Tl
3R	6573126	3R_6573126_SNP [dm3] 3R_10747404_SNP [dm6]	C	T	3.083e^-4	0.929	INTRON TkR86C
3R	27124150	3R_27124150_SNP [dm3] 3R_31298428_SNP [dm6]	T	A	3.087e^-4	0.929	INTERGENIC
3R	13131982	3R_13131982_SNP [dm3] 3R_17306260_SNP [dm6]	A	T	3.102e^-4	0.929	INTERGENIC
2L	18693035	2L_18693035_SNP [dm3] 2L_18693035_SNP [dm6]	G	T	3.106e^-4	0.929	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14881058	3R_14881058_SNP [dm3] 3R_19055336_SNP [dm6]	A	T	3.117e^-4	0.929	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2L	16164674	2L_16164674_SNP [dm3] 2L_16164674_SNP [dm6]	C	T	3.117e^-4	0.929	INTERGENIC
2R	12104729	2R_12104729_SNP [dm3] 2R_16217224_SNP [dm6]	G	C	3.117e^-4	0.929	INTRON mrj
3R	6500684	3R_6500684_SNP [dm3] 3R_10674962_SNP [dm6]	A	T	3.118e^-4	0.929	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	12939266	3R_12939266_SNP [dm3] 3R_17113544_SNP [dm6]	G	A	3.122e^-4	0.929	INTRON cher	TF binding site mE1_TFBS_cnc
2R	19542033	2R_19542033_SNP [dm3] 2R_23654510_SNP [dm6]	C	G	3.126e^-4	0.929	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl
2R	13901771	2R_13901771_SNP [dm3] 2R_18014266_SNP [dm6]	C	T	3.136e^-4	0.929	INTERGENIC
3R	13073125	3R_13073125_SNP [dm3] 3R_17247403_SNP [dm6]	C	A	3.138e^-4	0.929	NON_SYNONYMOUS_CODING beat-IIb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15098188	2L_15098188_SNP [dm3] 2L_15098188_SNP [dm6]	T	C	3.139e^-4	0.929	INTERGENIC
2L	20389634	2L_20389634_SNP [dm3] 2L_20389634_SNP [dm6]	T	C	3.147e^-4	0.929	INTRON CG10947
3L	18198012	3L_18198012_SNP [dm3] 3L_18204912_SNP [dm6]	T	A	3.157e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2011340	3R_2011340_SNP [dm3] 3R_6185618_SNP [dm6]	G	A	3.160e^-4	0.929	EXON CR31562
3L	8576597	3L_8576597_SNP [dm3] 3L_8583497_SNP [dm6]	C	T	3.162e^-4	0.929	UPSTREAM CG43078 INTRON CG43078
3R	25115806	3R_25115806_SNP [dm3] 3R_29290084_SNP [dm6]	A	C	3.162e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	27469100	3R_27469100_SNP [dm3] 3R_31643378_SNP [dm6]	G	C	3.163e^-4	0.929	INTRON kek6
2L	4957898	2L_4957898_SNP [dm3] 2L_4957898_SNP [dm6]	C	A	3.166e^-4	0.929	SYNONYMOUS_CODING Marcal1 UPSTREAM CG34124
3L	8612616	3L_8612616_SNP [dm3] 3L_8619516_SNP [dm6]	T	A	3.168e^-4	0.929	UPSTREAM S-Lap2 DOWNSTREAM S-Lap1 INTERGENIC
3R	27392029	3R_27392029_SNP [dm3] 3R_31566307_SNP [dm6]	A	G	3.170e^-4	0.929	DOWNSTREAM nyo INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15674062	3R_15674062_DEL [dm3] 3R_19848340_DEL [dm6]	GGAGATGAACATAGTAATCA...	G	3.189e^-4	0.929	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8314431	3L_8314431_SNP [dm3] 3L_8321331_SNP [dm6]	C	T	3.194e^-4	0.929	INTRON CG13670	TF binding site mE1_TFBS_cad
3L	9117203	3L_9117203_SNP [dm3] 3L_9124103_SNP [dm6]	T	A	3.199e^-4	0.929	INTRON bol
3L	10295960	3L_10295960_SNP [dm3] 3L_10302860_SNP [dm6]	T	G	3.220e^-4	0.929	INTERGENIC
2R	18653530	2R_18653530_SNP [dm3] 2R_22766025_SNP [dm6]	A	C	3.227e^-4	0.929	DOWNSTREAM CG13527 INTRON CG42260
2L	2158860	2L_2158860_SNP [dm3] 2L_2158860_SNP [dm6]	G	C	3.229e^-4	0.929	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	3.229e^-4	0.929	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	11858064	3R_11858064_SNP [dm3] 3R_16032342_SNP [dm6]	C	T	3.230e^-4	0.929	INTRON pnr	TF binding site mE1_TFBS_inv
3R	11872705	3R_11872705_SNP [dm3] 3R_16046983_SNP [dm6]	T	C	3.230e^-4	0.929	SYNONYMOUS_CODING ird5 UPSTREAM CG10407
2R	7512929	2R_7512929_SNP [dm3] 2R_11625424_SNP [dm6]	G	T	3.239e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13616371	3R_13616371_SNP [dm3] 3R_17790649_SNP [dm6]	G	T	3.241e^-4	0.929	INTRON CG43102
2L	12102074	2L_12102074_SNP [dm3] 2L_12102074_SNP [dm6]	G	T	3.246e^-4	0.929	SYNONYMOUS_CODING Patsas	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3914077	3L_3914077_SNP [dm3] 3L_3914077_SNP [dm6]	C	T	3.246e^-4	0.929	INTRON Eip63F-1
X	8972099	X_8972099_SNP [dm3] X_9078066_SNP [dm6]	C	A	3.255e^-4	0.929	DOWNSTREAM CG7246 INTRON CG44325
3L	18198007	3L_18198007_SNP [dm3] 3L_18204907_SNP [dm6]	A	T	3.259e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15163222	3R_15163222_INS [dm3] 3R_19337500_INS [dm6]	A	AA	3.278e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15289953	3R_15289953_INS [dm3] 3R_19464231_INS [dm6]	A	AA	3.281e^-4	0.929	INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	12147091	3R_12147091_SNP [dm3] 3R_16321369_SNP [dm6]	G	C	3.281e^-4	0.929	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
3R	20964902	3R_20964902_SNP [dm3] 3R_25139180_SNP [dm6]	C	T	3.299e^-4	0.929	SYNONYMOUS_CODING danr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	4393022	3L_4393022_SNP [dm3] 3L_4393022_SNP [dm6]	A	G	3.300e^-4	0.929	INTRON slow
3L	4393026	3L_4393026_SNP [dm3] 3L_4393026_SNP [dm6]	A	C	3.300e^-4	0.929	INTRON slow
X	13610308	X_13610308_SNP [dm3] X_13716275_SNP [dm6]	C	G	3.304e^-4	0.929	SYNONYMOUS_CODING NnaD INTRON CG9940	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11866459	3R_11866459_SNP [dm3] 3R_16040737_SNP [dm6]	T	A	3.311e^-4	0.929	UTR_3_PRIME pnr
2L	16039675	2L_16039675_INS [dm3] 2L_16039675_INS [dm6]	A	AGTA	3.316e^-4	0.929	UTR_3_PRIME beat-Ic	TF binding site mE1_TFBS_cad
2R	5016474	2R_5016474_SNP [dm3] 2R_9128969_SNP [dm6]	T	C	3.316e^-4	0.929	INTRON CG18659
2L	13414839	2L_13414839_SNP [dm3] 2L_13414839_SNP [dm6]	G	T	3.316e^-4	0.929	UPSTREAM CG42784 & 2 others INTERGENIC
2L	11867311	2L_11867311_SNP [dm3] 2L_11867311_SNP [dm6]	C	G	3.325e^-4	0.929	INTRON Pde1c
2R	19143020	2R_19143020_SNP [dm3] 2R_23255497_SNP [dm6]	T	A	3.331e^-4	0.929	INTERGENIC
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	3.333e^-4	0.929	INTRON CG34114
3L	15471942	3L_15471942_SNP [dm3] 3L_15478842_SNP [dm6]	A	G	3.335e^-4	0.929	INTERGENIC
2L	13414857	2L_13414857_SNP [dm3] 2L_13414857_SNP [dm6]	T	A	3.341e^-4	0.929	UPSTREAM CG42784 & 2 others INTERGENIC
3R	16726398	3R_16726398_SNP [dm3] 3R_20900676_SNP [dm6]	C	T	3.342e^-4	0.929	INTERGENIC
X	19719804	X_19719804_SNP [dm3] X_19825771_SNP [dm6]	T	C	3.351e^-4	0.929	INTERGENIC
3R	10457515	3R_10457515_SNP [dm3] 3R_14631793_SNP [dm6]	C	T	3.358e^-4	0.929	INTRON CG7886 & 1 other
X	5196409	X_5196409_SNP [dm3] X_5302376_SNP [dm6]	T	A	3.368e^-4	0.929	DOWNSTREAM CG3323 INTRON CG42749
3R	11889864	3R_11889864_SNP [dm3] 3R_16064142_SNP [dm6]	A	G	3.371e^-4	0.929	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
2R	3264013	2R_3264013_SNP [dm3] 2R_7376508_SNP [dm6]	G	C	3.391e^-4	0.929	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	7165954	3L_7165954_SNP [dm3] 3L_7172854_SNP [dm6]	T	C	3.392e^-4	0.929	INTRON Dscam2
3L	7165956	3L_7165956_INS [dm3] 3L_7172856_INS [dm6]	T	CCTTCAGC	3.392e^-4	0.929	INTRON Dscam2
3R	7773277	3R_7773277_SNP [dm3] 3R_11947555_SNP [dm6]	T	A	3.401e^-4	0.929	UTR_5_PRIME Cad87A	TF binding site BDTNP1_TFBS_dl
3L	4800954	3L_4800954_SNP [dm3] 3L_4800954_SNP [dm6]	G	T	3.402e^-4	0.929	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
X	19052473	X_19052473_SNP [dm3] X_19158440_SNP [dm6]	C	T	3.408e^-4	0.929	UPSTREAM RhoGAP18B INTRON RhoGAP18B
2L	5410256	2L_5410256_SNP [dm3] 2L_5410256_SNP [dm6]	G	A	3.410e^-4	0.929	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11027728	3L_11027728_SNP [dm3] 3L_11034628_SNP [dm6]	G	T	3.411e^-4	0.929	UPSTREAM CR44547 INTERGENIC
3R	5645723	3R_5645723_SNP [dm3] 3R_9820001_SNP [dm6]	G	A	3.411e^-4	0.929	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
3R	5652815	3R_5652815_DEL [dm3] 3R_9827093_DEL [dm6]	CT	C	3.420e^-4	0.929	UTR_3_PRIME Teh1
X	12810394	X_12810394_SNP [dm3] X_12916361_SNP [dm6]	A	C	3.422e^-4	0.929	DOWNSTREAM CR45626 INTERGENIC
2L	16039677	2L_16039677_SNP [dm3] 2L_16039677_SNP [dm6]	C	G	3.426e^-4	0.929	UTR_3_PRIME beat-Ic	TF binding site mE1_TFBS_cad
2R	3589275	2R_3589275_SNP [dm3] 2R_7701770_SNP [dm6]	T	A	3.427e^-4	0.929	UTR_3_PRIME CG30496 INTRON CG30493
3L	14327894	3L_14327894_SNP [dm3] 3L_14334794_SNP [dm6]	C	A	3.427e^-4	0.929	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12146238	3R_12146238_SNP [dm3] 3R_16320516_SNP [dm6]	C	T	3.439e^-4	0.929	UPSTREAM tRNA:F2:89BC INTRON Sulf1
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	3.439e^-4	0.929	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27054989	3R_27054989_SNP [dm3] 3R_31229267_SNP [dm6]	A	G	3.447e^-4	0.929	UTR_3_PRIME CG12054 DOWNSTREAM CG12054	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	5420344	2L_5420344_SNP [dm3] 2L_5420344_SNP [dm6]	T	C	3.460e^-4	0.929	INTERGENIC
3R	11007534	3R_11007534_SNP [dm3] 3R_15181812_SNP [dm6]	C	T	3.464e^-4	0.929	UPSTREAM Mf INTRON Gyc88E
3R	25115987	3R_25115987_SNP [dm3] 3R_29290265_SNP [dm6]	C	A	3.466e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11822982	2R_11822982_SNP [dm3] 2R_15935477_SNP [dm6]	A	T	3.478e^-4	0.929	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13266528	3L_13266528_SNP [dm3] 3L_13273428_SNP [dm6]	G	A	3.492e^-4	0.929	INTRON caps
3R	13131968	3R_13131968_SNP [dm3] 3R_17306246_SNP [dm6]	C	T	3.494e^-4	0.929	INTERGENIC
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	3.499e^-4	0.929	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	15145940	2R_15145940_SNP [dm3] 2R_19258435_SNP [dm6]	G	T	3.509e^-4	0.929	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	10438065	2R_10438065_SNP [dm3] 2R_14550560_SNP [dm6]	G	A	3.512e^-4	0.929	INTRON ttv
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	3.514e^-4	0.929	INTRON ClC-a
3L	10892866	3L_10892866_SNP [dm3] 3L_10899766_SNP [dm6]	A	C	3.518e^-4	0.929	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	18625779	3R_18625779_INS [dm3] 3R_22800057_INS [dm6]	T	AA	3.518e^-4	0.929	INTERGENIC
2R	7525212	2R_7525212_SNP [dm3] 2R_11637707_SNP [dm6]	G	A	3.519e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	14674970	2L_14674970_SNP [dm3] 2L_14674970_SNP [dm6]	C	T	3.521e^-4	0.929	INTRON osp
3R	15150601	3R_15150601_INS [dm3] 3R_19324879_INS [dm6]	T	TT	3.523e^-4	0.929	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7379987	2R_7379987_SNP [dm3] 2R_11492482_SNP [dm6]	A	C	3.544e^-4	0.929	INTRON inv
2L	9621585	2L_9621585_SNP [dm3] 2L_9621585_SNP [dm6]	G	A	3.548e^-4	0.929	SYNONYMOUS_CODING GlcAT-S
3R	17790678	3R_17790678_SNP [dm3] 3R_21964956_SNP [dm6]	A	C	3.551e^-4	0.929	INTRON Eip93F
3R	6497271	3R_6497271_SNP [dm3] 3R_10671549_SNP [dm6]	A	T	3.556e^-4	0.929	INTERGENIC
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	3.564e^-4	0.929	INTRON GC1
2R	5233115	2R_5233115_SNP [dm3] 2R_9345610_SNP [dm6]	C	T	3.585e^-4	0.929	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other
3L	12382617	3L_12382617_SNP [dm3] 3L_12389517_SNP [dm6]	T	A	3.591e^-4	0.929	INTRON Ncc69
3L	18069073	3L_18069073_SNP [dm3] 3L_18075973_SNP [dm6]	G	T	3.594e^-4	0.929	UPSTREAM CR45391 INTERGENIC
2L	13414855	2L_13414855_SNP [dm3] 2L_13414855_SNP [dm6]	A	G	3.598e^-4	0.929	UPSTREAM CG42784 & 2 others INTERGENIC
X	17414604	X_17414604_SNP [dm3] X_17520571_SNP [dm6]	G	A	3.599e^-4	0.929	INTRON CG43658
3R	15124642	3R_15124642_SNP [dm3] 3R_19298920_SNP [dm6]	T	C	3.601e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3327286	3L_3327286_SNP [dm3] 3L_3327286_SNP [dm6]	C	A	3.604e^-4	0.929	INTRON CG11526 & 1 other
X	8534386	X_8534386_SNP [dm3] X_8640353_SNP [dm6]	T	C	3.606e^-4	0.929	SPLICE_SITE_REGION oc INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18382462	3L_18382462_SNP [dm3] 3L_18389362_SNP [dm6]	A	T	3.606e^-4	0.929	INTERGENIC
3L	9515191	3L_9515191_SNP [dm3] 3L_9522091_SNP [dm6]	A	T	3.620e^-4	0.929	INTRON CG33700
2R	3079647	2R_3079647_SNP [dm3] 2R_7192142_SNP [dm6]	G	A	3.624e^-4	0.929	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11362462	2L_11362462_SNP [dm3] 2L_11362462_SNP [dm6]	A	C	3.630e^-4	0.929	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	17556711	2L_17556711_SNP [dm3] 2L_17556711_SNP [dm6]	T	C	3.632e^-4	0.929	UPSTREAM CG7094 INTERGENIC
2L	17556726	2L_17556726_SNP [dm3] 2L_17556726_SNP [dm6]	T	C	3.632e^-4	0.929	UPSTREAM CG7094 INTERGENIC
3L	10295708	3L_10295708_SNP [dm3] 3L_10302608_SNP [dm6]	G	A	3.634e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5071809	2R_5071809_SNP [dm3] 2R_9184304_SNP [dm6]	A	T	3.653e^-4	0.929	INTRON ltd EXON CR44284	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	10571834	3L_10571834_SNP [dm3] 3L_10578734_SNP [dm6]	A	G	3.659e^-4	0.929	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15782507	2L_15782507_SNP [dm3] 2L_15782507_SNP [dm6]	T	A	3.659e^-4	0.929	INTERGENIC
3R	6878041	3R_6878041_SNP [dm3] 3R_11052319_SNP [dm6]	T	C	3.662e^-4	0.929	INTERGENIC
3R	14881168	3R_14881168_SNP [dm3] 3R_19055446_SNP [dm6]	C	T	3.663e^-4	0.929	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2R	17812003	2R_17812003_SNP [dm3] 2R_21924498_SNP [dm6]	T	A	3.667e^-4	0.929	INTRON Fili
3R	17559947	3R_17559947_SNP [dm3] 3R_21734225_SNP [dm6]	T	A	3.668e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	14823848	X_14823848_SNP [dm3] X_14929815_SNP [dm6]	C	T	3.668e^-4	0.929	UTR_5_PRIME Flo2 UPSTREAM CG32591 & 1 other INTRON Flo2
3L	8312389	3L_8312389_SNP [dm3] 3L_8319289_SNP [dm6]	C	T	3.671e^-4	0.929	UPSTREAM CG43059 INTERGENIC
3L	10698716	3L_10698716_SNP [dm3] 3L_10705616_SNP [dm6]	C	G	3.675e^-4	0.929	INTERGENIC
3L	10295794	3L_10295794_SNP [dm3] 3L_10302694_SNP [dm6]	T	A	3.681e^-4	0.929	INTERGENIC
2R	18000378	2R_18000378_SNP [dm3] 2R_22112873_SNP [dm6]	G	A	3.688e^-4	0.929	UPSTREAM CG30280 & 1 other INTRON Vrp1
X	3459976	X_3459976_SNP [dm3] X_3565943_SNP [dm6]	C	T	3.694e^-4	0.929	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	6291350	3R_6291350_SNP [dm3] 3R_10465628_SNP [dm6]	C	A	3.695e^-4	0.929	UPSTREAM CR44955 INTERGENIC
3L	4393038	3L_4393038_SNP [dm3] 3L_4393038_SNP [dm6]	G	C	3.700e^-4	0.929	INTRON slow
2R	10593323	2R_10593323_SNP [dm3] 2R_14705818_SNP [dm6]	G	A	3.701e^-4	0.929	INTRON mspo
3L	11119174	3L_11119174_SNP [dm3] 3L_11126074_SNP [dm6]	A	G	3.709e^-4	0.929	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	15096374	2L_15096374_SNP [dm3] 2L_15096374_SNP [dm6]	C	T	3.715e^-4	0.929	UTR_3_PRIME CG15270
2L	3484340	2L_3484340_SNP [dm3] 2L_3484340_SNP [dm6]	C	T	3.717e^-4	0.929	INTRON CG15414
3L	19526131	3L_19526131_SNP [dm3] 3L_19533031_SNP [dm6]	C	A	3.722e^-4	0.929	UTR_5_PRIME Cpr76Bd
3R	12710821	3R_12710821_SNP [dm3] 3R_16885099_SNP [dm6]	T	G	3.728e^-4	0.929	INTRON iab-8
2L	8371881	2L_8371881_SNP [dm3] 2L_8371881_SNP [dm6]	A	G	3.738e^-4	0.929	UPSTREAM CG17292 INTRON CG17292
2L	16585532	2L_16585532_SNP [dm3] 2L_16585532_SNP [dm6]	A	T	3.741e^-4	0.929	INTRON CG42389
3R	14870797	3R_14870797_SNP [dm3] 3R_19045075_SNP [dm6]	A	G	3.763e^-4	0.929	UTR_3_PRIME cdi DOWNSTREAM cdi & 1 other	TF binding site mE1_TFBS_zfh1
2L	10079962	2L_10079962_SNP [dm3] 2L_10079962_SNP [dm6]	T	A	3.765e^-4	0.929	INTRON CG44153	TF binding site mE1_TFBS_inv
3L	16863506	3L_16863506_SNP [dm3] 3L_16870406_SNP [dm6]	C	A	3.770e^-4	0.929	INTRON Lmpt
2L	17804935	2L_17804935_SNP [dm3] 2L_17804935_SNP [dm6]	T	C	3.774e^-4	0.929	INTRON CadN2
X	21982670	X_21982670_INS [dm3] X_22580834_INS [dm6]	T	TTTCGGGAAATCAAACTTGT...	3.780e^-4	0.929	INTERGENIC
3R	17216193	3R_17216193_SNP [dm3] 3R_21390471_SNP [dm6]	G	A	3.784e^-4	0.929	DOWNSTREAM bap INTERGENIC
2L	12619135	2L_12619135_SNP [dm3] 2L_12619135_SNP [dm6]	T	C	3.786e^-4	0.929	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	6289143	3R_6289143_INS [dm3] 3R_10463421_INS [dm6]	T	CA	3.798e^-4	0.929	EXON CR44955
3R	26622579	3R_26622579_SNP [dm3] 3R_30796857_SNP [dm6]	G	C	3.798e^-4	0.929	INTRON wts
2L	2264715	2L_2264715_SNP [dm3] 2L_2264715_SNP [dm6]	G	A	3.799e^-4	0.929	SPLICE_SITE_REGION CG34049 DOWNSTREAM CG4270 INTRON CG34049
2L	12619158	2L_12619158_SNP [dm3] 2L_12619158_SNP [dm6]	A	G	3.803e^-4	0.929	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	2295732	3R_2295732_SNP [dm3] 3R_6470010_SNP [dm6]	T	C	3.813e^-4	0.929	SYNONYMOUS_CODING Neurochondrin	TF binding site mE1_TFBS_cad
3L	13395357	3L_13395357_SNP [dm3] 3L_13402257_SNP [dm6]	G	T	3.817e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3R	25137675	3R_25137675_DEL [dm3] 3R_29311953_DEL [dm6]	CCGCTTAATTTTC...	C	3.822e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_sens
2R	6995976	2R_6995976_SNP [dm3] 2R_11108471_SNP [dm6]	T	C	3.824e^-4	0.929	INTRON luna
2L	12604857	2L_12604857_SNP [dm3] 2L_12604857_SNP [dm6]	G	C	3.825e^-4	0.929	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8030773	3L_8030773_SNP [dm3] 3L_8037673_SNP [dm6]	T	C	3.832e^-4	0.929	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18724120	2R_18724120_DEL [dm3] 2R_22836597_DEL [dm6]	TTTAAAACAACA...	T	3.852e^-4	0.929	UTR_3_PRIME CG12490 UPSTREAM CG9825
3L	7298489	3L_7298489_SNP [dm3] 3L_7305389_SNP [dm6]	C	G	3.866e^-4	0.929	INTRON unc-13-4A
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	3.873e^-4	0.929	UTR_5_PRIME Rgk3 INTRON Rgk3
3L	12249045	3L_12249045_SNP [dm3] 3L_12255945_SNP [dm6]	A	T	3.874e^-4	0.929	INTRON app	TF binding site mE1_TFBS_cad
2R	6995252	2R_6995252_SNP [dm3] 2R_11107747_SNP [dm6]	G	A	3.874e^-4	0.929	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6588321	2L_6588321_SNP [dm3] 2L_6588321_SNP [dm6]	C	T	3.885e^-4	0.929	INTRON CG11319
2R	7512917	2R_7512917_DEL [dm3] 2R_11625412_DEL [dm6]	CT	A	3.888e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512921	2R_7512921_SNP [dm3] 2R_11625416_SNP [dm6]	T	A	3.888e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512923	2R_7512923_MNP [dm3] 2R_11625418_MNP [dm6]	CCA	AAG	3.888e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512885	2R_7512885_DEL [dm3] 2R_11625380_DEL [dm6]	TT	T	3.889e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18889880	3L_18889880_SNP [dm3] 3L_18896780_SNP [dm6]	C	T	3.890e^-4	0.929	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11378357	2L_11378357_SNP [dm3] 2L_11378357_SNP [dm6]	C	T	3.911e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	16461269	2L_16461269_SNP [dm3] 2L_16461269_SNP [dm6]	A	G	3.922e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
3L	855914	3L_855914_SNP [dm3] 3L_855914_SNP [dm6]	T	A	3.924e^-4	0.929	INTRON dpr20
2L	16250557	2L_16250557_SNP [dm3] 2L_16250557_SNP [dm6]	C	A	3.928e^-4	0.929	INTRON PRL-1
3R	10679742	3R_10679742_SNP [dm3] 3R_14854020_SNP [dm6]	C	T	3.929e^-4	0.929	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11340870	2R_11340870_SNP [dm3] 2R_15453365_SNP [dm6]	T	C	3.931e^-4	0.929	INTRON CG43729
2R	6997984	2R_6997984_SNP [dm3] 2R_11110479_SNP [dm6]	A	T	3.932e^-4	0.929	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6854617	3R_6854617_SNP [dm3] 3R_11028895_SNP [dm6]	G	C	3.938e^-4	0.929	INTRON CG34114
3L	11183491	3L_11183491_SNP [dm3] 3L_11190391_SNP [dm6]	G	A	3.942e^-4	0.929	INTRON GlcAT-P
3L	19681240	3L_19681240_DEL [dm3] 3L_19688140_DEL [dm6]	ACTGTATGCGTCTCTAACAT...	A	3.943e^-4	0.929	UPSTREAM CG8765 INTRON Gbeta76C	TF binding site mE1_TFBS_cad
3L	11119149	3L_11119149_SNP [dm3] 3L_11126049_SNP [dm6]	C	G	3.943e^-4	0.929	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	4393037	3L_4393037_SNP [dm3] 3L_4393037_SNP [dm6]	A	T	3.951e^-4	0.929	INTRON slow
2R	15002534	2R_15002534_SNP [dm3] 2R_19115029_SNP [dm6]	C	T	3.955e^-4	0.929	INTRON 5-HT1A
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	3.958e^-4	0.929	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	18215312	3L_18215312_INS [dm3] 3L_18222212_INS [dm6]	A	AGCG	3.963e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7512904	2R_7512904_SNP [dm3] 2R_11625399_SNP [dm6]	C	A	3.964e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10295957	3L_10295957_SNP [dm3] 3L_10302857_SNP [dm6]	G	T	3.977e^-4	0.929	INTERGENIC
2R	7379538	2R_7379538_SNP [dm3] 2R_11492033_SNP [dm6]	G	T	3.977e^-4	0.929	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12453642	3L_12453642_SNP [dm3] 3L_12460542_SNP [dm6]	A	G	3.988e^-4	0.929	INTERGENIC
2R	17981246	2R_17981246_SNP [dm3] 2R_22093741_SNP [dm6]	C	T	3.988e^-4	0.929	NON_SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12131478	3R_12131478_SNP [dm3] 3R_16305756_SNP [dm6]	T	C	3.994e^-4	0.929	UPSTREAM Zip89B DOWNSTREAM gish INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3591382	2R_3591382_SNP [dm3] 2R_7703877_SNP [dm6]	G	C	4.004e^-4	0.929	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
3R	13604694	3R_13604694_SNP [dm3] 3R_17778972_SNP [dm6]	G	C	4.009e^-4	0.929	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
X	9655077	X_9655077_SNP [dm3] X_9761044_SNP [dm6]	G	C	4.013e^-4	0.929	INTERGENIC
3R	6862567	3R_6862567_SNP [dm3] 3R_11036845_SNP [dm6]	A	T	4.016e^-4	0.929	INTRON CG34114
3R	26793188	3R_26793188_SNP [dm3] 3R_30967466_SNP [dm6]	G	A	4.020e^-4	0.929	DOWNSTREAM 5-HT7 INTERGENIC
2R	3815556	2R_3815556_SNP [dm3] 2R_7928051_SNP [dm6]	C	G	4.020e^-4	0.929	START_GAINED CG8791 UTR_5_PRIME CG8791 INTRON CG8791	TF binding site mE1_TFBS_cad
3L	18198092	3L_18198092_SNP [dm3] 3L_18204992_SNP [dm6]	C	A	4.029e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14456131	X_14456131_SNP [dm3] X_14562098_SNP [dm6]	G	A	4.029e^-4	0.929	INTERGENIC
3R	18060309	3R_18060309_SNP [dm3] 3R_22234587_SNP [dm6]	C	T	4.040e^-4	0.929	INTRON SKIP
3R	17749557	3R_17749557_SNP [dm3] 3R_21923835_SNP [dm6]	T	A	4.045e^-4	0.929	INTERGENIC
2L	13414816	2L_13414816_SNP [dm3] 2L_13414816_SNP [dm6]	T	C	4.045e^-4	0.929	UPSTREAM CG42784 & 2 others INTERGENIC
3R	13131967	3R_13131967_SNP [dm3] 3R_17306245_SNP [dm6]	G	A	4.046e^-4	0.929	INTERGENIC
2R	18257588	2R_18257588_INS [dm3] 2R_22370083_INS [dm6]	C	CCTC	4.050e^-4	0.929	INTRON Liprin-gamma
2L	2164370	2L_2164370_SNP [dm3] 2L_2164370_SNP [dm6]	G	A	4.054e^-4	0.929	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	12482835	2L_12482835_SNP [dm3] 2L_12482835_SNP [dm6]	G	A	4.055e^-4	0.929	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	11449536	2L_11449536_SNP [dm3] 2L_11449536_SNP [dm6]	A	C	4.057e^-4	0.929	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15562408	2L_15562408_SNP [dm3] 2L_15562408_SNP [dm6]	T	C	4.067e^-4	0.929	INTRON kek3
3R	6497149	3R_6497149_SNP [dm3] 3R_10671427_SNP [dm6]	A	G	4.068e^-4	0.929	INTERGENIC
3L	11119097	3L_11119097_SNP [dm3] 3L_11125997_SNP [dm6]	G	A	4.071e^-4	0.929	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	14111225	2R_14111225_SNP [dm3] 2R_18223720_SNP [dm6]	G	C	4.078e^-4	0.929	INTERGENIC
3R	11862806	3R_11862806_INS [dm3] 3R_16037084_INS [dm6]	T	TGTTTC	4.100e^-4	0.929	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3L	4393049	3L_4393049_SNP [dm3] 3L_4393049_SNP [dm6]	G	T	4.103e^-4	0.929	INTRON slow
2R	17996148	2R_17996148_SNP [dm3] 2R_22108643_SNP [dm6]	G	T	4.103e^-4	0.929	SYNONYMOUS_CODING Vrp1
2L	5410281	2L_5410281_SNP [dm3] 2L_5410281_SNP [dm6]	G	A	4.104e^-4	0.929	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5025099	2R_5025099_SNP [dm3] 2R_9137594_SNP [dm6]	G	T	4.109e^-4	0.929	SYNONYMOUS_CODING alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2876797	2R_2876797_SNP [dm3] 2R_6989292_SNP [dm6]	C	T	4.112e^-4	0.929	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
3L	10292245	3L_10292245_SNP [dm3] 3L_10299145_SNP [dm6]	T	C	4.113e^-4	0.929	INTERGENIC
3R	4060812	3R_4060812_SNP [dm3] 3R_8235090_SNP [dm6]	C	G	4.114e^-4	0.929	SYNONYMOUS_CODING DNApol-iota	TF binding site mE1_TFBS_sens
3L	855730	3L_855730_SNP [dm3] 3L_855730_SNP [dm6]	T	C	4.115e^-4	0.929	INTRON dpr20
2L	16239759	2L_16239759_SNP [dm3] 2L_16239759_SNP [dm6]	T	C	4.116e^-4	0.929	INTRON CG42817
2R	18467915	2R_18467915_DEL [dm3] 2R_22580410_DEL [dm6]	TAC	T	4.124e^-4	0.929	INTRON dnr1
2L	15542096	2L_15542096_SNP [dm3] 2L_15542096_SNP [dm6]	T	A	4.131e^-4	0.929	INTERGENIC
3R	12126629	3R_12126629_SNP [dm3] 3R_16300907_SNP [dm6]	A	G	4.144e^-4	0.929	INTRON gish	TF binding site BDTNP1_TFBS_dl
2R	9045998	2R_9045998_SNP [dm3] 2R_13158493_SNP [dm6]	A	T	4.144e^-4	0.929	UPSTREAM CG34439 & 1 other INTRON TppII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	10805221	2L_10805221_SNP [dm3] 2L_10805221_SNP [dm6]	C	T	4.145e^-4	0.929	INTRON Nos
3R	6851315	3R_6851315_SNP [dm3] 3R_11025593_SNP [dm6]	C	A	4.147e^-4	0.929	INTRON CG34114
2L	15787218	2L_15787218_SNP [dm3] 2L_15787218_SNP [dm6]	T	A	4.148e^-4	0.929	SYNONYMOUS_CODING CG18109
X	18845865	X_18845865_SNP [dm3] X_18951832_SNP [dm6]	T	A	4.150e^-4	0.929	INTRON CG43759
2L	16581966	2L_16581966_SNP [dm3] 2L_16581966_SNP [dm6]	T	A	4.163e^-4	0.929	INTRON CG42389	TF binding site mE1_TFBS_bab1
2R	9515388	2R_9515388_SNP [dm3] 2R_13627883_SNP [dm6]	G	C	4.171e^-4	0.929	INTRON fas
3L	12382519	3L_12382519_SNP [dm3] 3L_12389419_SNP [dm6]	A	C	4.171e^-4	0.929	INTRON Ncc69
3L	15691341	3L_15691341_SNP [dm3] 3L_15698241_SNP [dm6]	C	T	4.174e^-4	0.929	NON_SYNONYMOUS_CODING comm2	TF binding site mE1_TFBS_sens
3R	24374914	3R_24374914_SNP [dm3] 3R_28549192_SNP [dm6]	T	G	4.177e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16814329	2L_16814329_SNP [dm3] 2L_16814329_SNP [dm6]	A	C	4.180e^-4	0.929	SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_sens
2R	7065634	2R_7065634_SNP [dm3] 2R_11178129_SNP [dm6]	G	T	4.187e^-4	0.929	INTRON shn	TF binding site mE1_TFBS_inv
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	4.188e^-4	0.929	INTRON sNPF
3R	17790700	3R_17790700_SNP [dm3] 3R_21964978_SNP [dm6]	T	C	4.191e^-4	0.929	INTRON Eip93F
2L	18720474	2L_18720474_SNP [dm3] 2L_18720474_SNP [dm6]	A	C	4.192e^-4	0.929	INTRON CG10348
3L	15323508	3L_15323508_INS [dm3] 3L_15330408_INS [dm6]	C	CTCAAAGTCAACTC...	4.199e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18937020	2L_18937020_SNP [dm3] 2L_18937020_SNP [dm6]	T	C	4.228e^-4	0.929	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16115875	2R_16115875_SNP [dm3] 2R_20228370_SNP [dm6]	C	G	4.234e^-4	0.929	INTERGENIC
3R	11945407	3R_11945407_SNP [dm3] 3R_16119685_SNP [dm6]	T	A	4.238e^-4	0.929	INTRON Sb
3R	18983947	3R_18983947_SNP [dm3] 3R_23158225_SNP [dm6]	A	G	4.241e^-4	0.929	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	18941808	X_18941808_SNP [dm3] X_19047775_SNP [dm6]	A	T	4.247e^-4	0.929	INTERGENIC
3L	12236397	3L_12236397_SNP [dm3] 3L_12243297_SNP [dm6]	C	T	4.248e^-4	0.929	INTRON app
3R	25499425	3R_25499425_SNP [dm3] 3R_29673703_SNP [dm6]	T	C	4.256e^-4	0.929	DOWNSTREAM Bub3 INTRON ppk19
2L	17608367	2L_17608367_SNP [dm3] 2L_17608367_SNP [dm6]	C	A	4.260e^-4	0.929	INTERGENIC
3R	26634276	3R_26634276_SNP [dm3] 3R_30808554_SNP [dm6]	A	G	4.263e^-4	0.929	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	17265894	X_17265894_SNP [dm3] X_17371861_SNP [dm6]	G	C	4.268e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	4.279e^-4	0.929	INTRON Octbeta3R
3L	18878750	3L_18878750_SNP [dm3] 3L_18885650_SNP [dm6]	C	T	4.280e^-4	0.929	UPSTREAM CG3961 INTRON CG3961
3R	5080032	3R_5080032_SNP [dm3] 3R_9254310_SNP [dm6]	G	T	4.280e^-4	0.929	UPSTREAM CG16734 DOWNSTREAM St2 EXON CR16735	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1358011	3L_1358011_SNP [dm3] 3L_1358011_SNP [dm6]	T	C	4.288e^-4	0.929	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4136369	2R_4136369_SNP [dm3] 2R_8248864_SNP [dm6]	T	C	4.292e^-4	0.929	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12240577	3L_12240577_SNP [dm3] 3L_12247477_SNP [dm6]	A	T	4.300e^-4	0.929	INTRON app
2L	14920809	2L_14920809_SNP [dm3] 2L_14920809_SNP [dm6]	T	G	4.302e^-4	0.929	INTRON CG42313
2L	16912819	2L_16912819_SNP [dm3] 2L_16912819_SNP [dm6]	G	A	4.309e^-4	0.929	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
X	9012786	X_9012786_SNP [dm3] X_9118753_SNP [dm6]	T	C	4.319e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16921002	2R_16921002_SNP [dm3] 2R_21033497_SNP [dm6]	T	G	4.320e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	1007912	3L_1007912_SNP [dm3] 3L_1007912_SNP [dm6]	G	A	4.327e^-4	0.929	UPSTREAM trio INTRON trio	TF binding site mE1_TFBS_inv
3R	6349271	3R_6349271_SNP [dm3] 3R_10523549_SNP [dm6]	C	A	4.332e^-4	0.929	INTRON hth
3R	18621700	3R_18621700_SNP [dm3] 3R_22795978_SNP [dm6]	T	C	4.332e^-4	0.929	INTERGENIC
2R	7394590	2R_7394590_SNP [dm3] 2R_11507085_SNP [dm6]	G	A	4.334e^-4	0.929	UTR_3_PRIME inv
2R	12834767	2R_12834767_SNP [dm3] 2R_16947262_SNP [dm6]	T	A	4.337e^-4	0.929	SYNONYMOUS_CODING CG34190 DOWNSTREAM Vha16-4 & 1 other
X	9905272	X_9905272_SNP [dm3] X_10011239_SNP [dm6]	A	G	4.346e^-4	0.929	SYNONYMOUS_CODING CG2990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16250169	2L_16250169_SNP [dm3] 2L_16250169_SNP [dm6]	G	T	4.348e^-4	0.929	INTRON PRL-1
3L	13398311	3L_13398311_SNP [dm3] 3L_13405211_SNP [dm6]	T	A	4.350e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15145862	2R_15145862_SNP [dm3] 2R_19258357_SNP [dm6]	A	G	4.351e^-4	0.929	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18073004	2R_18073004_SNP [dm3] 2R_22185499_SNP [dm6]	G	A	4.354e^-4	0.929	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18621668	3R_18621668_SNP [dm3] 3R_22795946_SNP [dm6]	C	T	4.355e^-4	0.929	INTERGENIC
3R	18621678	3R_18621678_SNP [dm3] 3R_22795956_SNP [dm6]	T	A	4.355e^-4	0.929	INTERGENIC
3L	6763404	3L_6763404_SNP [dm3] 3L_6770304_SNP [dm6]	G	A	4.355e^-4	0.929	INTERGENIC
3L	13342868	3L_13342868_SNP [dm3] 3L_13349768_SNP [dm6]	T	A	4.369e^-4	0.929	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11041336	3L_11041336_SNP [dm3] 3L_11048236_SNP [dm6]	G	T	4.370e^-4	0.929	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	3269116	2L_3269116_SNP [dm3] 2L_3269116_SNP [dm6]	C	T	4.373e^-4	0.929	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
3L	9490202	3L_9490202_SNP [dm3] 3L_9497102_SNP [dm6]	A	C	4.374e^-4	0.929	INTRON path
X	5243414	X_5243414_SNP [dm3] X_5349381_SNP [dm6]	A	T	4.382e^-4	0.929	INTRON SK
3R	13647627	3R_13647627_SNP [dm3] 3R_17821905_SNP [dm6]	T	A	4.390e^-4	0.929	UTR_5_PRIME tinc INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	4075196	2R_4075196_SNP [dm3] 2R_8187691_SNP [dm6]	A	G	4.393e^-4	0.929	INTRON LRP1
2L	6534037	2L_6534037_SNP [dm3] 2L_6534037_SNP [dm6]	G	T	4.397e^-4	0.929	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	11179099	3L_11179099_SNP [dm3] 3L_11185999_SNP [dm6]	C	G	4.400e^-4	0.929	INTRON GlcAT-P
3R	22020217	3R_22020217_SNP [dm3] 3R_26194495_SNP [dm6]	G	T	4.412e^-4	0.929	UPSTREAM CR44320 INTERGENIC
2R	17592702	2R_17592702_SNP [dm3] 2R_21705197_SNP [dm6]	G	A	4.412e^-4	0.929	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3066335	X_3066335_SNP [dm3] X_3172302_SNP [dm6]	A	T	4.417e^-4	0.929	UTR_3_PRIME CG18508 DOWNSTREAM CG18508 & 1 other
3L	16863507	3L_16863507_SNP [dm3] 3L_16870407_SNP [dm6]	A	C	4.418e^-4	0.929	INTRON Lmpt
2L	10904670	2L_10904670_SNP [dm3] 2L_10904670_SNP [dm6]	C	G	4.419e^-4	0.929	UPSTREAM CR45724 INTERGENIC
3L	9742820	3L_9742820_SNP [dm3] 3L_9749720_SNP [dm6]	C	T	4.428e^-4	0.929	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18653525	2R_18653525_SNP [dm3] 2R_22766020_SNP [dm6]	C	A	4.430e^-4	0.929	DOWNSTREAM CG13527 INTRON CG42260
2L	6534024	2L_6534024_DEL [dm3] 2L_6534024_DEL [dm6]	AC	A	4.434e^-4	0.929	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	12834615	2R_12834615_SNP [dm3] 2R_16947110_SNP [dm6]	C	A	4.435e^-4	0.929	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
2L	8154088	2L_8154088_SNP [dm3] 2L_8154088_SNP [dm6]	A	G	4.442e^-4	0.929	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8154109	2L_8154109_SNP [dm3] 2L_8154109_SNP [dm6]	C	A	4.442e^-4	0.929	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	528071	3L_528071_SNP [dm3] 3L_528071_SNP [dm6]	G	C	4.443e^-4	0.929	UPSTREAM CG34269 DOWNSTREAM CR45118 INTRON klar EXON CR45117
3R	13131906	3R_13131906_SNP [dm3] 3R_17306184_SNP [dm6]	T	G	4.443e^-4	0.929	INTERGENIC
3L	18018412	3L_18018412_SNP [dm3] 3L_18025312_SNP [dm6]	G	T	4.457e^-4	0.929	INTRON Eip75B
2R	18725003	2R_18725003_SNP [dm3] 2R_22837480_SNP [dm6]	G	A	4.460e^-4	0.929	DOWNSTREAM CG12490 INTRON CG9825
2R	12014311	2R_12014311_SNP [dm3] 2R_16126806_SNP [dm6]	T	G	4.460e^-4	0.929	INTRON spin
3R	11862813	3R_11862813_SNP [dm3] 3R_16037091_SNP [dm6]	T	A	4.464e^-4	0.929	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2R	16430656	2R_16430656_SNP [dm3] 2R_20543151_SNP [dm6]	G	A	4.465e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7358787	X_7358787_SNP [dm3] X_7464754_SNP [dm6]	C	T	4.478e^-4	0.929	INTERGENIC
2R	12854447	2R_12854447_SNP [dm3] 2R_16966942_SNP [dm6]	G	T	4.481e^-4	0.929	INTERGENIC
3R	18621749	3R_18621749_SNP [dm3] 3R_22796027_SNP [dm6]	C	G	4.483e^-4	0.929	INTERGENIC
3R	19058380	3R_19058380_SNP [dm3] 3R_23232658_SNP [dm6]	G	A	4.483e^-4	0.929	SYNONYMOUS_CODING CG4467	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1171952	3L_1171952_DEL [dm3] 3L_1171952_DEL [dm6]	CGGCATACGC	C	4.494e^-4	0.929	INTRON bab2	regulatory region REDfly_CRMs
3L	7166971	3L_7166971_SNP [dm3] 3L_7173871_SNP [dm6]	A	G	4.497e^-4	0.929	DOWNSTREAM Dscam2 INTRON Dscam2
X	8374405	X_8374405_DEL [dm3] X_8480372_DEL [dm6]	TT	T	4.501e^-4	0.929	UTR_3_PRIME Cp36 INTRON CG33223
3R	2132328	3R_2132328_SNP [dm3] 3R_6306606_SNP [dm6]	G	A	4.510e^-4	0.929	DOWNSTREAM CG31556 & 1 other INTERGENIC
3L	11181083	3L_11181083_SNP [dm3] 3L_11187983_SNP [dm6]	C	A	4.511e^-4	0.929	INTRON GlcAT-P
2R	17992269	2R_17992269_SNP [dm3] 2R_22104764_SNP [dm6]	C	T	4.511e^-4	0.929	SYNONYMOUS_CODING CG6613
3R	21909379	3R_21909379_SNP [dm3] 3R_26083657_SNP [dm6]	T	C	4.516e^-4	0.929	INTRON dys
2R	3591072	2R_3591072_SNP [dm3] 2R_7703567_SNP [dm6]	G	A	4.520e^-4	0.929	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
3R	11896391	3R_11896391_SNP [dm3] 3R_16070669_SNP [dm6]	A	G	4.524e^-4	0.929	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad
3R	6852595	3R_6852595_SNP [dm3] 3R_11026873_SNP [dm6]	G	C	4.539e^-4	0.929	INTRON CG34114
3R	11862811	3R_11862811_INS [dm3] 3R_16037089_INS [dm6]	A	AAGTTCA	4.551e^-4	0.929	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2L	17618236	2L_17618236_SNP [dm3] 2L_17618236_SNP [dm6]	A	C	4.556e^-4	0.929	INTERGENIC
3L	19492446	3L_19492446_SNP [dm3] 3L_19499346_SNP [dm6]	G	T	4.559e^-4	0.929	SYNONYMOUS_CODING CG9451
3R	15844111	3R_15844111_DEL [dm3] 3R_20018389_DEL [dm6]	TT	T	4.568e^-4	0.929	UTR_3_PRIME CG4433 DOWNSTREAM CG4433 & 1 other
X	10888624	X_10888624_SNP [dm3] X_10994591_SNP [dm6]	C	G	4.572e^-4	0.929	INTRON CG42339
3L	11967519	3L_11967519_SNP [dm3] 3L_11974419_SNP [dm6]	A	C	4.577e^-4	0.929	UPSTREAM CG42397 & 1 other INTERGENIC
3R	18465559	3R_18465559_SNP [dm3] 3R_22639837_SNP [dm6]	G	A	4.577e^-4	0.929	UTR_5_PRIME CG45058 UPSTREAM loco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11863907	3R_11863907_SNP [dm3] 3R_16038185_SNP [dm6]	C	T	4.580e^-4	0.929	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21480177	3L_21480177_SNP [dm3] 3L_21487077_SNP [dm6]	T	C	4.582e^-4	0.929	INTRON Neu2	transposable element FlyBase
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	4.583e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19016952	3L_19016952_SNP [dm3] 3L_19023852_SNP [dm6]	A	T	4.589e^-4	0.929	INTRON nkd
2R	6867977	2R_6867977_SNP [dm3] 2R_10980472_SNP [dm6]	T	C	4.591e^-4	0.929	UTR_3_PRIME luna
3R	24374919	3R_24374919_SNP [dm3] 3R_28549197_SNP [dm6]	C	T	4.595e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2378643	X_2378643_SNP [dm3] X_2484610_SNP [dm6]	T	A	4.607e^-4	0.929	SPLICE_SITE_REGION trol INTRON trol
2L	18474992	2L_18474992_SNP [dm3] 2L_18474992_SNP [dm6]	G	A	4.609e^-4	0.929	INTRON CG10283
3R	13131937	3R_13131937_SNP [dm3] 3R_17306215_SNP [dm6]	G	T	4.611e^-4	0.929	INTERGENIC
3R	12032678	3R_12032678_SNP [dm3] 3R_16206956_SNP [dm6]	A	T	4.616e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8274201	2R_8274201_SNP [dm3] 2R_12386696_SNP [dm6]	G	T	4.633e^-4	0.929	UTR_5_PRIME Cpr49Ac UPSTREAM Cpr49Ac
3R	2807832	3R_2807832_INS [dm3] 3R_6982110_INS [dm6]	G	GCGG	4.637e^-4	0.929	INTRON Antp
2L	14014232	2L_14014232_SNP [dm3] 2L_14014232_SNP [dm6]	G	T	4.637e^-4	0.929	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	15264965	3L_15264965_SNP [dm3] 3L_15271865_SNP [dm6]	A	G	4.643e^-4	0.929	INTERGENIC
3R	13131989	3R_13131989_INS [dm3] 3R_17306267_INS [dm6]	A	ACAATA	4.646e^-4	0.929	INTERGENIC
X	3067232	X_3067232_DEL [dm3] X_3173199_DEL [dm6]	AAAAAA	TG	4.650e^-4	0.929	UPSTREAM CG18508 DOWNSTREAM N & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	18998249	X_18998249_SNP [dm3] X_19104216_SNP [dm6]	T	C	4.655e^-4	0.929	INTERGENIC
3R	22934521	3R_22934521_SNP [dm3] 3R_27108799_SNP [dm6]	G	T	4.658e^-4	0.929	UTR_3_PRIME gb UPSTREAM CR45209
2L	2600451	2L_2600451_SNP [dm3] 2L_2600451_SNP [dm6]	C	T	4.662e^-4	0.929	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
3R	21998515	3R_21998515_SNP [dm3] 3R_26172793_SNP [dm6]	A	G	4.674e^-4	0.929	INTRON CG31323
2R	6292128	2R_6292128_SNP [dm3] 2R_10404623_SNP [dm6]	T	A	4.679e^-4	0.929	INTRON CG42732
2R	7512878	2R_7512878_SNP [dm3] 2R_11625373_SNP [dm6]	A	T	4.683e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10642150	2R_10642150_SNP [dm3] 2R_14754645_SNP [dm6]	G	T	4.688e^-4	0.929	SYNONYMOUS_CODING CG10151	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11862816	3R_11862816_SNP [dm3] 3R_16037094_SNP [dm6]	T	A	4.696e^-4	0.929	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3L	7272916	3L_7272916_SNP [dm3] 3L_7279816_SNP [dm6]	G	A	4.696e^-4	0.929	INTRON unc-13-4A
3L	857218	3L_857218_SNP [dm3] 3L_857218_SNP [dm6]	G	A	4.697e^-4	0.929	UTR_5_PRIME dpr20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	4.698e^-4	0.929	INTRON CG14877
2L	6130955	2L_6130955_SNP [dm3] 2L_6130955_SNP [dm6]	T	C	4.698e^-4	0.929	UPSTREAM CG9222 & 2 others INTERGENIC
3R	11952910	3R_11952910_SNP [dm3] 3R_16127188_SNP [dm6]	A	C	4.698e^-4	0.929	INTRON Sb
2R	19144249	2R_19144249_SNP [dm3] 2R_23256726_SNP [dm6]	T	C	4.701e^-4	0.929	INTERGENIC
3L	10295700	3L_10295700_SNP [dm3] 3L_10302600_SNP [dm6]	C	T	4.709e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13640154	2R_13640154_SNP [dm3] 2R_17752649_SNP [dm6]	G	A	4.728e^-4	0.929	SPLICE_SITE_REGION CG5002 DOWNSTREAM CG6385 INTRON CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1380440	X_1380440_SNP [dm3] X_1486407_SNP [dm6]	C	T	4.730e^-4	0.929	UTR_3_PRIME Nmdar2 INTRON inc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18936791	2L_18936791_SNP [dm3] 2L_18936791_SNP [dm6]	G	T	4.734e^-4	0.929	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12594714	2L_12594714_SNP [dm3] 2L_12594714_SNP [dm6]	G	A	4.738e^-4	0.929	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7512844	2R_7512844_SNP [dm3] 2R_11625339_SNP [dm6]	A	C	4.740e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13135093	2L_13135093_SNP [dm3] 2L_13135093_SNP [dm6]	C	A	4.748e^-4	0.929	DOWNSTREAM CG5122 INTERGENIC
2R	11204494	2R_11204494_SNP [dm3] 2R_15316989_SNP [dm6]	G	T	4.749e^-4	0.929	NON_SYNONYMOUS_CODING mus210 DOWNSTREAM CG8155	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20054617	2L_20054617_SNP [dm3] 2L_20054617_SNP [dm6]	G	A	4.756e^-4	0.929	NON_SYNONYMOUS_CODING sNPF
3R	7081082	3R_7081082_SNP [dm3] 3R_11255360_SNP [dm6]	A	C	4.757e^-4	0.929	INTRON CR43283	TF binding site mE1_TFBS_Trl
X	13111485	X_13111485_SNP [dm3] X_13217452_SNP [dm6]	G	A	4.759e^-4	0.929	SYNONYMOUS_CODING mew	TF binding site mE1_TFBS_sens
2R	16131433	2R_16131433_SNP [dm3] 2R_20243928_SNP [dm6]	T	C	4.767e^-4	0.929	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6140856	2L_6140856_SNP [dm3] 2L_6140856_SNP [dm6]	G	T	4.772e^-4	0.929	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5026100	2R_5026100_SNP [dm3] 2R_9138595_SNP [dm6]	T	C	4.775e^-4	0.929	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2839936	3R_2839936_SNP [dm3] 3R_7014214_SNP [dm6]	G	A	4.775e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7746556	3R_7746556_SNP [dm3] 3R_11920834_SNP [dm6]	T	G	4.782e^-4	0.929	INTRON Cad87A
2R	7317890	2R_7317890_SNP [dm3] 2R_11430385_SNP [dm6]	T	C	4.783e^-4	0.929	UPSTREAM Drip INTERGENIC
2L	1106134	2L_1106134_SNP [dm3] 2L_1106134_SNP [dm6]	G	A	4.784e^-4	0.929	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20156550	X_20156550_SNP [dm3] X_20285523_SNP [dm6]	G	A	4.789e^-4	0.929	INTERGENIC
X	11569984	X_11569984_SNP [dm3] X_11675951_SNP [dm6]	A	G	4.790e^-4	0.929	UTR_3_PRIME Ptp10D	TF binding site mE1_TFBS_kn
2L	22099059	2L_22099059_SNP [dm3] 2L_22099059_SNP [dm6]	G	T	4.793e^-4	0.929	INTERGENIC
3R	13131958	3R_13131958_SNP [dm3] 3R_17306236_SNP [dm6]	T	G	4.795e^-4	0.929	INTERGENIC
3R	13131961	3R_13131961_SNP [dm3] 3R_17306239_SNP [dm6]	A	T	4.795e^-4	0.929	INTERGENIC
3R	13131963	3R_13131963_INS [dm3] 3R_17306241_INS [dm6]	A	AATT	4.795e^-4	0.929	INTERGENIC
3R	13131945	3R_13131945_SNP [dm3] 3R_17306223_SNP [dm6]	G	T	4.796e^-4	0.929	INTERGENIC
2L	12254921	2L_12254921_SNP [dm3] 2L_12254921_SNP [dm6]	C	T	4.800e^-4	0.929	INTRON aret
2L	2266078	2L_2266078_SNP [dm3] 2L_2266078_SNP [dm6]	A	T	4.810e^-4	0.929	UPSTREAM CG34049 INTERGENIC
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	4.813e^-4	0.929	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	4.814e^-4	0.929	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
2R	8105914	2R_8105914_SNP [dm3] 2R_12218409_SNP [dm6]	G	C	4.828e^-4	0.929	INTERGENIC
2L	7012395	2L_7012395_SNP [dm3] 2L_7012395_SNP [dm6]	A	G	4.834e^-4	0.929	SYNONYMOUS_CODING CG43321
3R	4673690	3R_4673690_SNP [dm3] 3R_8847968_SNP [dm6]	G	T	4.836e^-4	0.929	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10300552	3L_10300552_SNP [dm3] 3L_10307452_SNP [dm6]	A	T	4.837e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15772757	3R_15772757_SNP [dm3] 3R_19947035_SNP [dm6]	A	C	4.839e^-4	0.929	INTRON Hs6st
3R	23294921	3R_23294921_SNP [dm3] 3R_27469199_SNP [dm6]	G	C	4.840e^-4	0.929	INTERGENIC
3R	17660946	3R_17660946_SNP [dm3] 3R_21835224_SNP [dm6]	T	G	4.841e^-4	0.929	INTERGENIC
2L	1069742	2L_1069742_SNP [dm3] 2L_1069742_SNP [dm6]	A	G	4.862e^-4	0.929	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2876518	2R_2876518_INS [dm3] 2R_6989013_INS [dm6]	C	TTGA	4.863e^-4	0.929	DOWNSTREAM CG17002 INTERGENIC
X	3385016	X_3385016_DEL [dm3] X_3490983_DEL [dm6]	TGAAT	T	4.878e^-4	0.929	DOWNSTREAM Gas8 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16724299	X_16724299_SNP [dm3] X_16830266_SNP [dm6]	T	C	4.879e^-4	0.929	INTRON CG13004
2L	15541779	2L_15541779_SNP [dm3] 2L_15541779_SNP [dm6]	C	T	4.880e^-4	0.929	INTERGENIC
3R	17790811	3R_17790811_SNP [dm3] 3R_21965089_SNP [dm6]	T	G	4.894e^-4	0.929	INTRON Eip93F
X	3459927	X_3459927_SNP [dm3] X_3565894_SNP [dm6]	T	A	4.898e^-4	0.929	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	7456696	3L_7456696_SNP [dm3] 3L_7463596_SNP [dm6]	A	C	4.907e^-4	0.929	INTERGENIC
3R	6867847	3R_6867847_SNP [dm3] 3R_11042125_SNP [dm6]	C	T	4.910e^-4	0.929	INTRON CG34114
3L	11185936	3L_11185936_SNP [dm3] 3L_11192836_SNP [dm6]	T	G	4.911e^-4	0.929	INTRON GlcAT-P
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	4.912e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2633875	3L_2633875_SNP [dm3] 3L_2633875_SNP [dm6]	G	A	4.916e^-4	0.929	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	13395462	3L_13395462_SNP [dm3] 3L_13402362_SNP [dm6]	A	C	4.921e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	11190970	2L_11190970_SNP [dm3] 2L_11190970_SNP [dm6]	T	C	4.922e^-4	0.929	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	22629901	3R_22629901_SNP [dm3] 3R_26804179_SNP [dm6]	A	C	4.923e^-4	0.929	UPSTREAM snoRNA:Me28S-U1554 INTRON Tl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	12254919	2L_12254919_SNP [dm3] 2L_12254919_SNP [dm6]	T	C	4.924e^-4	0.929	INTRON aret
X	2239200	X_2239200_SNP [dm3] X_2345167_SNP [dm6]	G	A	4.932e^-4	0.929	UTR_3_PRIME ptr UPSTREAM mRpL14 DOWNSTREAM ptr	TF binding site BDTNP1_TFBS_Med
3R	15772761	3R_15772761_SNP [dm3] 3R_19947039_SNP [dm6]	C	T	4.933e^-4	0.929	INTRON Hs6st
2R	8621891	2R_8621891_SNP [dm3] 2R_12734386_SNP [dm6]	A	C	4.936e^-4	0.929	INTRON CG42663
X	13817149	X_13817149_DEL [dm3] X_13923116_DEL [dm6]	TT	T	4.941e^-4	0.929	INTRON mamo
2L	5466922	2L_5466922_SNP [dm3] 2L_5466922_SNP [dm6]	A	T	4.942e^-4	0.929	UTR_3_PRIME mid DOWNSTREAM mid
3L	13281862	3L_13281862_SNP [dm3] 3L_13288762_SNP [dm6]	A	T	4.942e^-4	0.929	INTERGENIC
3R	6880972	3R_6880972_SNP [dm3] 3R_11055250_SNP [dm6]	A	G	4.953e^-4	0.929	INTERGENIC
3R	15898089	3R_15898089_SNP [dm3] 3R_20072367_SNP [dm6]	A	G	4.960e^-4	0.929	INTERGENIC
3L	6065043	3L_6065043_DEL [dm3] 3L_6071943_DEL [dm6]	ACGCT	A	4.964e^-4	0.929	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
3L	10571829	3L_10571829_DEL [dm3] 3L_10578729_DEL [dm6]	GG	A	4.980e^-4	0.929	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12774153	X_12774153_SNP [dm3] X_12880120_SNP [dm6]	G	A	4.982e^-4	0.929	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1359739	2L_1359739_SNP [dm3] 2L_1359739_SNP [dm6]	G	A	4.990e^-4	0.929	UTR_5_PRIME CG31659 DOWNSTREAM NLaz INTRON CG31659
2L	16579070	2L_16579070_SNP [dm3] 2L_16579070_SNP [dm6]	G	T	4.994e^-4	0.929	INTRON CG42389	TF binding site mE1_TFBS_inv
2R	7512869	2R_7512869_DEL [dm3] 2R_11625364_DEL [dm6]	AAG	C	4.997e^-4	0.929	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13590878	2L_13590878_SNP [dm3] 2L_13590878_SNP [dm6]	G	T	5.000e^-4	0.929	INTRON kuz	TF binding site BDTNP1_TFBS_da
2R	6995721	2R_6995721_SNP [dm3] 2R_11108216_SNP [dm6]	T	A	5.002e^-4	0.929	INTRON luna	TF binding site mE1_TFBS_Trl
3R	12736845	3R_12736845_SNP [dm3] 3R_16911123_SNP [dm6]	T	C	5.006e^-4	0.929	INTRON iab-8
2L	11390624	2L_11390624_SNP [dm3] 2L_11390624_SNP [dm6]	C	G	5.015e^-4	0.929	EXON CR43681	regulatory region REDfly_CRMs

Missing results

By genomic position
Variant impact
Gene name

Cuticul_11_9_Me_C23 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results