DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.070e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03335
In_3R_P	0.04555
In_3R_K	4.581e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4138	0.0667
In_3R_K	15.7123	0.0004

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2148 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	3.098e^-9	0.006	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	3.336e^-8	0.031	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	6.304e^-8	0.039	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	6.011e^-7	0.222	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	6.581e^-7	0.222	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	7.138e^-7	0.222	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	8.835e^-7	0.222	DOWNSTREAM CR44941 INTERGENIC
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	9.463e^-7	0.222	UPSTREAM CR45374 INTERGENIC
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.111e^-6	0.228	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	1.263e^-6	0.228	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	1.385e^-6	0.228	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.644e^-6	0.228	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	1.663e^-6	0.228	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	1.700e^-6	0.228	INTRON ush	regulatory region REDfly_CRMs
X	8201781	X_8201781_SNP [dm3] X_8307748_SNP [dm6]	G	A	1.925e^-6	0.241	INTRON nAChRalpha3
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	2.773e^-6	0.325	INTRON CG18769
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	3.106e^-6	0.343	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	3.478e^-6	0.353	UPSTREAM CR45374 INTERGENIC
3R	25078873	3R_25078873_SNP [dm3] 3R_29253151_SNP [dm6]	C	T	3.575e^-6	0.353	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	3.826e^-6	0.359	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	528267	2L_528267_SNP [dm3] 2L_528267_SNP [dm6]	T	A	4.026e^-6	0.36	INTRON ush	regulatory region REDfly_CRMs
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	4.570e^-6	0.39	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	4.821e^-6	0.393	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	5.730e^-6	0.428	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	6.145e^-6	0.428	UPSTREAM CG17292 INTRON CG17292
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	6.250e^-6	0.428	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	6.275e^-6	0.428	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2L	13886448	2L_13886448_SNP [dm3] 2L_13886448_SNP [dm6]	A	G	6.385e^-6	0.428	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	6.755e^-6	0.437	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	7.718e^-6	0.462	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	7.736e^-6	0.462	INTRON CG18769
2L	19251673	2L_19251673_SNP [dm3] 2L_19251673_SNP [dm6]	A	T	8.126e^-6	0.462	INTERGENIC
2R	5976584	2R_5976584_DEL [dm3] 2R_10089079_DEL [dm6]	CACA	C	8.431e^-6	0.462	INTRON CG2269
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	8.742e^-6	0.462	UPSTREAM CG17292 INTRON CG17292
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	8.938e^-6	0.462	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8137315	2R_8137315_SNP [dm3] 2R_12249810_SNP [dm6]	G	A	9.324e^-6	0.462	INTERGENIC
3R	17214297	3R_17214297_SNP [dm3] 3R_21388575_SNP [dm6]	G	T	9.331e^-6	0.462	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	13606673	X_13606673_SNP [dm3] X_13712640_SNP [dm6]	G	T	9.367e^-6	0.462	SYNONYMOUS_CODING NnaD INTRON CG9940
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	9.890e^-6	0.471	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	1.004e^-5	0.471	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.033e^-5	0.471	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	1.098e^-5	0.471	INTRON kar	TF binding site mE1_TFBS_cad
3L	9526161	3L_9526161_SNP [dm3] 3L_9533061_SNP [dm6]	A	T	1.108e^-5	0.471	INTERGENIC
2R	15171997	2R_15171997_SNP [dm3] 2R_19284492_SNP [dm6]	T	G	1.109e^-5	0.471	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	1.145e^-5	0.471	INTRON mam
3L	8631682	3L_8631682_INS [dm3] 3L_8638582_INS [dm6]	A	ATA	1.202e^-5	0.471	UTR_3_PRIME Zasp66	TF binding site mE1_TFBS_cnc
3R	15041244	3R_15041244_SNP [dm3] 3R_19215522_SNP [dm6]	C	T	1.235e^-5	0.471	UTR_3_PRIME vib DOWNSTREAM cry
3R	11639782	3R_11639782_SNP [dm3] 3R_15814060_SNP [dm6]	C	T	1.270e^-5	0.471	INTRON alpha-Man-IIb
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.284e^-5	0.471	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15172241	2R_15172241_SNP [dm3] 2R_19284736_SNP [dm6]	G	A	1.286e^-5	0.471	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	1.297e^-5	0.471	SYNONYMOUS_CODING decay UPSTREAM Gr89a
2L	7072903	2L_7072903_SNP [dm3] 2L_7072903_SNP [dm6]	C	T	1.342e^-5	0.471	INTRON Pvf2
2L	15401192	2L_15401192_SNP [dm3] 2L_15401192_SNP [dm6]	A	G	1.352e^-5	0.471	UPSTREAM CR45374 INTERGENIC
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	1.356e^-5	0.471	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	1.425e^-5	0.48	INTRON ClC-a
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	1.433e^-5	0.48	DOWNSTREAM CG18109 INTERGENIC
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.469e^-5	0.484	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25079138	3R_25079138_SNP [dm3] 3R_29253416_SNP [dm6]	G	A	1.615e^-5	0.51	NON_SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	1.619e^-5	0.51	INTERGENIC
3R	23161744	3R_23161744_SNP [dm3] 3R_27336022_SNP [dm6]	A	G	1.650e^-5	0.51	INTERGENIC
3R	23161801	3R_23161801_SNP [dm3] 3R_27336079_SNP [dm6]	G	A	1.657e^-5	0.51	INTERGENIC
2R	15172026	2R_15172026_SNP [dm3] 2R_19284521_SNP [dm6]	T	A	1.764e^-5	0.529	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8511590	3R_8511590_SNP [dm3] 3R_12685868_SNP [dm6]	T	C	1.832e^-5	0.529	INTRON kar	TF binding site mE1_TFBS_cad
3R	13328042	3R_13328042_SNP [dm3] 3R_17502320_SNP [dm6]	T	G	1.897e^-5	0.529	INTRON Dscam3
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	1.912e^-5	0.529	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	2.021e^-5	0.529	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23161749	3R_23161749_SNP [dm3] 3R_27336027_SNP [dm6]	G	A	2.040e^-5	0.529	INTERGENIC
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	2.087e^-5	0.529	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	2.107e^-5	0.529	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
2R	8173388	2R_8173388_SNP [dm3] 2R_12285883_SNP [dm6]	T	C	2.110e^-5	0.529	UPSTREAM CG42700 INTRON CG42700
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	2.121e^-5	0.529	INTRON kar	TF binding site mE1_TFBS_cad
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	2.138e^-5	0.529	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25078765	3R_25078765_SNP [dm3] 3R_29253043_SNP [dm6]	G	A	2.147e^-5	0.529	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	14926231	2L_14926231_SNP [dm3] 2L_14926231_SNP [dm6]	A	G	2.151e^-5	0.529	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	9634257	3L_9634257_SNP [dm3] 3L_9641157_SNP [dm6]	G	T	2.172e^-5	0.529	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	2.194e^-5	0.529	UPSTREAM CG10635 & 1 other INTERGENIC
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	2.201e^-5	0.529	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	2.231e^-5	0.529	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	2.264e^-5	0.529	SYNONYMOUS_CODING CG30344
2R	15171741	2R_15171741_SNP [dm3] 2R_19284236_SNP [dm6]	T	A	2.267e^-5	0.529	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7073756	2L_7073756_SNP [dm3] 2L_7073756_SNP [dm6]	T	A	2.283e^-5	0.529	INTRON Pvf2
X	9455415	X_9455415_SNP [dm3] X_9561382_SNP [dm6]	C	T	2.311e^-5	0.529	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	2.518e^-5	0.569	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	2.614e^-5	0.579	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9731081	3L_9731081_SNP [dm3] 3L_9737981_SNP [dm6]	G	A	2.624e^-5	0.579	INTRON CG42268
3R	6542668	3R_6542668_SNP [dm3] 3R_10716946_SNP [dm6]	T	C	2.672e^-5	0.583	INTERGENIC
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	2.707e^-5	0.584	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13606664	X_13606664_SNP [dm3] X_13712631_SNP [dm6]	G	T	2.741e^-5	0.584	SPLICE_SITE_REGION NnaD SYNONYMOUS_CODING NnaD INTRON CG9940
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	2.807e^-5	0.587	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	17213941	3R_17213941_SNP [dm3] 3R_21388219_SNP [dm6]	T	A	2.817e^-5	0.587	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17990646	2R_17990646_SNP [dm3] 2R_22103141_SNP [dm6]	T	C	2.953e^-5	0.597	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	2.955e^-5	0.597	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	2.962e^-5	0.597	INTRON CG14877
2L	19253260	2L_19253260_SNP [dm3] 2L_19253260_SNP [dm6]	C	T	3.007e^-5	0.6	INTERGENIC
3L	5343409	3L_5343409_SNP [dm3] 3L_5350309_SNP [dm6]	C	A	3.041e^-5	0.6	INTRON lama
2R	17990624	2R_17990624_SNP [dm3] 2R_22103119_SNP [dm6]	T	A	3.091e^-5	0.604	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7473528	2R_7473528_SNP [dm3] 2R_11586023_SNP [dm6]	G	A	3.165e^-5	0.607	SYNONYMOUS_CODING tou
2R	8179555	2R_8179555_SNP [dm3] 2R_12292050_SNP [dm6]	T	G	3.172e^-5	0.607	INTRON CG42700
3R	7633242	3R_7633242_SNP [dm3] 3R_11807520_SNP [dm6]	A	G	3.204e^-5	0.607	UPSTREAM ClC-a INTRON ClC-a
2R	15172244	2R_15172244_SNP [dm3] 2R_19284739_SNP [dm6]	G	T	3.273e^-5	0.61	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	13664846	2R_13664846_SNP [dm3] 2R_17777341_SNP [dm6]	G	A	3.284e^-5	0.61	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad
2L	4978863	2L_4978863_SNP [dm3] 2L_4978863_SNP [dm6]	C	G	3.367e^-5	0.619	NON_SYNONYMOUS_CODING CG8891 DOWNSTREAM CG8892 & 1 other
2R	8179587	2R_8179587_SNP [dm3] 2R_12292082_SNP [dm6]	A	G	3.449e^-5	0.624	INTRON CG42700
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	3.458e^-5	0.624	UPSTREAM CG10635 & 1 other INTERGENIC
3R	17213975	3R_17213975_SNP [dm3] 3R_21388253_SNP [dm6]	T	A	3.582e^-5	0.629	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	11283491	3R_11283491_SNP [dm3] 3R_15457769_SNP [dm6]	T	C	3.635e^-5	0.629	INTRON AdamTS-A
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	3.650e^-5	0.629	INTERGENIC
2L	15651017	2L_15651017_SNP [dm3] 2L_15651017_SNP [dm6]	G	C	3.672e^-5	0.629	INTRON CG4587
2R	8179522	2R_8179522_SNP [dm3] 2R_12292017_SNP [dm6]	G	C	3.722e^-5	0.629	INTRON CG42700
2R	15137920	2R_15137920_SNP [dm3] 2R_19250415_SNP [dm6]	G	T	3.727e^-5	0.629	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
3L	9870489	3L_9870489_SNP [dm3] 3L_9877389_SNP [dm6]	G	C	3.752e^-5	0.629	DOWNSTREAM CR45406 INTERGENIC
3L	9306038	3L_9306038_SNP [dm3] 3L_9312938_SNP [dm6]	A	C	3.868e^-5	0.629	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	3.949e^-5	0.629	UPSTREAM CG10635 & 1 other INTERGENIC
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	4.011e^-5	0.629	UPSTREAM hoe1 INTRON hoe1
3R	19206458	3R_19206458_INS [dm3] 3R_23380736_INS [dm6]	C	CCATGAC	4.020e^-5	0.629	CODON_INSERTION CG4393	TF binding site mE1_TFBS_chinmo
3R	14506517	3R_14506517_SNP [dm3] 3R_18680795_SNP [dm6]	T	A	4.055e^-5	0.629	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3L	7389364	3L_7389364_SNP [dm3] 3L_7396264_SNP [dm6]	G	T	4.060e^-5	0.629	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27143473	3R_27143473_SNP [dm3] 3R_31317751_SNP [dm6]	T	C	4.069e^-5	0.629	INTRON CG34347
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	4.072e^-5	0.629	DOWNSTREAM CG10096 & 1 other INTRON CG34402
3L	6333308	3L_6333308_DEL [dm3] 3L_6340208_DEL [dm6]	TCATGAGTGCATTT...	T	4.080e^-5	0.629	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2R	12533956	2R_12533956_SNP [dm3] 2R_16646451_SNP [dm6]	C	G	4.185e^-5	0.629	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18946044	2L_18946044_SNP [dm3] 2L_18946044_SNP [dm6]	G	A	4.305e^-5	0.629	UPSTREAM CR42848 EXON CR44740	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18382524	3L_18382524_SNP [dm3] 3L_18389424_SNP [dm6]	T	C	4.308e^-5	0.629	INTERGENIC
3R	9793675	3R_9793675_SNP [dm3] 3R_13967953_SNP [dm6]	T	C	4.346e^-5	0.629	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
2R	19165115	2R_19165115_SNP [dm3] 2R_23277592_SNP [dm6]	C	T	4.394e^-5	0.629	INTERGENIC
2R	15172988	2R_15172988_SNP [dm3] 2R_19285483_SNP [dm6]	T	G	4.410e^-5	0.629	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3R	17213783	3R_17213783_SNP [dm3] 3R_21388061_SNP [dm6]	G	A	4.418e^-5	0.629	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14503317	3R_14503317_SNP [dm3] 3R_18677595_SNP [dm6]	G	T	4.458e^-5	0.629	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	20074668	2L_20074668_SNP [dm3] 2L_20074668_SNP [dm6]	T	C	4.496e^-5	0.629	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18948405	2L_18948405_SNP [dm3] 2L_18948405_SNP [dm6]	T	A	4.502e^-5	0.629	UPSTREAM CG10428 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14885925	2R_14885925_SNP [dm3] 2R_18998420_SNP [dm6]	T	A	4.514e^-5	0.629	SYNONYMOUS_CODING tn INTRON tn
X	16002012	X_16002012_SNP [dm3] X_16107979_SNP [dm6]	T	C	4.546e^-5	0.629	INTERGENIC
3R	11642404	3R_11642404_SNP [dm3] 3R_15816682_SNP [dm6]	T	C	4.548e^-5	0.629	INTRON alpha-Man-IIb
3R	7633235	3R_7633235_SNP [dm3] 3R_11807513_SNP [dm6]	G	A	4.613e^-5	0.629	UPSTREAM ClC-a INTRON ClC-a
2L	18950964	2L_18950964_SNP [dm3] 2L_18950964_SNP [dm6]	G	A	4.624e^-5	0.629	UTR_3_PRIME CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17990632	2R_17990632_SNP [dm3] 2R_22103127_SNP [dm6]	T	A	4.733e^-5	0.629	UPSTREAM CG6613 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	4.764e^-5	0.629	UTR_3_PRIME bol
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	4.770e^-5	0.629	INTRON Octbeta3R
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	4.797e^-5	0.629	SYNONYMOUS_CODING Best2
3L	9856857	3L_9856857_SNP [dm3] 3L_9863757_SNP [dm6]	A	T	4.831e^-5	0.629	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10025833	2R_10025833_SNP [dm3] 2R_14138328_SNP [dm6]	A	C	4.842e^-5	0.629	INTRON Prosap
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	4.854e^-5	0.629	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	4.912e^-5	0.629	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	5361957	3L_5361957_DEL [dm3] 3L_5368857_DEL [dm6]	ATTAAACTGAGTATTTCGAA...	A	4.916e^-5	0.629	UPSTREAM CG10635 & 1 other INTERGENIC
3L	2859594	3L_2859594_SNP [dm3] 3L_2859594_SNP [dm6]	G	T	5.027e^-5	0.629	INTRON CG43444
3R	26779403	3R_26779403_SNP [dm3] 3R_30953681_SNP [dm6]	G	A	5.029e^-5	0.629	INTERGENIC
2R	8118739	2R_8118739_SNP [dm3] 2R_12231234_SNP [dm6]	A	T	5.041e^-5	0.629	INTERGENIC
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	5.044e^-5	0.629	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8118741	2R_8118741_SNP [dm3] 2R_12231236_SNP [dm6]	T	C	5.053e^-5	0.629	INTERGENIC
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	5.082e^-5	0.629	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	7633251	3R_7633251_SNP [dm3] 3R_11807529_SNP [dm6]	T	A	5.100e^-5	0.629	UPSTREAM ClC-a INTRON ClC-a
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	5.105e^-5	0.629	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
3R	24790026	3R_24790026_SNP [dm3] 3R_28964304_SNP [dm6]	C	T	5.130e^-5	0.629	INTRON CG14521
2L	18983663	2L_18983663_INS [dm3] 2L_18983663_INS [dm6]	C	CAGTATAATTCGCTTAGCTG...	5.203e^-5	0.631	INTRON Swip-1	TF binding site mE1_TFBS_HSA
2R	8176885	2R_8176885_SNP [dm3] 2R_12289380_SNP [dm6]	G	C	5.246e^-5	0.631	INTRON CG42700
2R	5976691	2R_5976691_SNP [dm3] 2R_10089186_SNP [dm6]	T	A	5.275e^-5	0.631	INTRON CG2269
X	7939533	X_7939533_SNP [dm3] X_8045500_SNP [dm6]	C	T	5.293e^-5	0.631	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3L	13392512	3L_13392512_SNP [dm3] 3L_13399412_SNP [dm6]	T	C	5.315e^-5	0.631	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10504684	3R_10504684_SNP [dm3] 3R_14678962_SNP [dm6]	G	C	5.474e^-5	0.634	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10298570	3L_10298570_SNP [dm3] 3L_10305470_SNP [dm6]	A	G	5.504e^-5	0.634	INTERGENIC
3L	5416388	3L_5416388_SNP [dm3] 3L_5423288_SNP [dm6]	T	A	5.522e^-5	0.634	UPSTREAM CG34391 INTERGENIC
3R	27143441	3R_27143441_SNP [dm3] 3R_31317719_SNP [dm6]	G	A	5.603e^-5	0.634	INTRON CG34347
2R	15173618	2R_15173618_SNP [dm3] 2R_19286113_SNP [dm6]	G	A	5.678e^-5	0.634	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17620828	X_17620828_SNP [dm3] X_17726795_SNP [dm6]	A	G	5.690e^-5	0.634	INTRON CG42684
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	5.765e^-5	0.634	INTERGENIC
X	14398542	X_14398542_SNP [dm3] X_14504509_SNP [dm6]	A	G	5.776e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3344119	2R_3344119_SNP [dm3] 2R_7456614_SNP [dm6]	G	A	5.825e^-5	0.634	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14342349	3R_14342349_SNP [dm3] 3R_18516627_SNP [dm6]	G	A	5.851e^-5	0.634	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	4599184	2L_4599184_SNP [dm3] 2L_4599184_SNP [dm6]	G	A	5.865e^-5	0.634	INTRON dp	TF binding site mE1_TFBS_sbb
3R	8152807	3R_8152807_SNP [dm3] 3R_12327085_SNP [dm6]	C	A	5.885e^-5	0.634	UPSTREAM CR45584 INTERGENIC
3R	6546552	3R_6546552_SNP [dm3] 3R_10720830_SNP [dm6]	G	A	6.004e^-5	0.634	INTERGENIC
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	6.054e^-5	0.634	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
2R	8171033	2R_8171033_SNP [dm3] 2R_12283528_SNP [dm6]	G	T	6.054e^-5	0.634	INTRON CG42700
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	6.061e^-5	0.634	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8176481	2R_8176481_SNP [dm3] 2R_12288976_SNP [dm6]	C	T	6.066e^-5	0.634	INTRON CG42700
2L	6887682	2L_6887682_SNP [dm3] 2L_6887682_SNP [dm6]	C	A	6.098e^-5	0.634	INTRON Nlg2
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	6.142e^-5	0.634	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25079467	3R_25079467_SNP [dm3] 3R_29253745_SNP [dm6]	T	C	6.203e^-5	0.634	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15765759	2L_15765759_SNP [dm3] 2L_15765759_SNP [dm6]	C	G	6.228e^-5	0.634	UTR_3_PRIME CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	14141597	3L_14141597_DEL [dm3] 3L_14148497_DEL [dm6]	TT	T	6.259e^-5	0.634	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	16497795	2L_16497795_SNP [dm3] 2L_16497795_SNP [dm6]	A	G	6.302e^-5	0.634	INTRON Tpr2
2R	3344122	2R_3344122_SNP [dm3] 2R_7456617_SNP [dm6]	A	G	6.433e^-5	0.634	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	6333356	3L_6333356_SNP [dm3] 3L_6340256_SNP [dm6]	A	C	6.546e^-5	0.634	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	6.551e^-5	0.634	INTERGENIC
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	6.561e^-5	0.634	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	6.568e^-5	0.634	INTRON CG15630
3R	7633265	3R_7633265_INS [dm3] 3R_11807543_INS [dm6]	T	TA	6.596e^-5	0.634	UPSTREAM ClC-a INTRON ClC-a
X	9455442	X_9455442_SNP [dm3] X_9561409_SNP [dm6]	A	G	6.597e^-5	0.634	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15629477	2L_15629477_SNP [dm3] 2L_15629477_SNP [dm6]	T	A	6.625e^-5	0.634	SYNONYMOUS_CODING CG7631 UPSTREAM CG18480
2R	15172994	2R_15172994_SNP [dm3] 2R_19285489_SNP [dm6]	T	C	6.626e^-5	0.634	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	6.651e^-5	0.634	UPSTREAM CG17292 INTRON CG17292
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	6.652e^-5	0.634	UPSTREAM CG6527 INTRON A2bp1
3L	7851754	3L_7851754_SNP [dm3] 3L_7858654_SNP [dm6]	A	G	6.658e^-5	0.634	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3R	15073442	3R_15073442_SNP [dm3] 3R_19247720_SNP [dm6]	T	C	6.711e^-5	0.634	INTRON CG5217
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	6.742e^-5	0.634	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
3L	18382462	3L_18382462_SNP [dm3] 3L_18389362_SNP [dm6]	A	T	6.787e^-5	0.634	INTERGENIC
3R	27144518	3R_27144518_SNP [dm3] 3R_31318796_SNP [dm6]	C	T	6.803e^-5	0.634	INTRON CG34347
3R	6574424	3R_6574424_SNP [dm3] 3R_10748702_SNP [dm6]	C	A	6.810e^-5	0.634	INTRON TkR86C
2R	14884638	2R_14884638_SNP [dm3] 2R_18997133_SNP [dm6]	T	G	6.825e^-5	0.634	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad
2L	8372116	2L_8372116_SNP [dm3] 2L_8372116_SNP [dm6]	A	G	6.848e^-5	0.634	UPSTREAM CG17292 INTRON CG17292
2R	8173649	2R_8173649_SNP [dm3] 2R_12286144_SNP [dm6]	C	G	6.856e^-5	0.634	NON_SYNONYMOUS_CODING CG42700 INTRON CG42700
2L	4648712	2L_4648712_SNP [dm3] 2L_4648712_SNP [dm6]	T	A	6.889e^-5	0.634	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4648720	2L_4648720_SNP [dm3] 2L_4648720_SNP [dm6]	G	A	6.889e^-5	0.634	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	6.893e^-5	0.634	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	5416468	3L_5416468_SNP [dm3] 3L_5423368_SNP [dm6]	A	T	6.933e^-5	0.634	UPSTREAM CG34391 INTERGENIC
2L	10522790	2L_10522790_SNP [dm3] 2L_10522790_SNP [dm6]	C	G	7.117e^-5	0.636	INTERGENIC
3L	5416401	3L_5416401_SNP [dm3] 3L_5423301_SNP [dm6]	G	T	7.179e^-5	0.636	UPSTREAM CG34391 INTERGENIC
2R	8170450	2R_8170450_SNP [dm3] 2R_12282945_SNP [dm6]	T	C	7.191e^-5	0.636	INTRON CG42700
3L	9730800	3L_9730800_SNP [dm3] 3L_9737700_SNP [dm6]	G	A	7.250e^-5	0.636	INTRON CG42268
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	7.315e^-5	0.636	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12325242	3R_12325242_SNP [dm3] 3R_16499520_SNP [dm6]	G	A	7.316e^-5	0.636	UPSTREAM Gr89a INTRON decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25079056	3R_25079056_SNP [dm3] 3R_29253334_SNP [dm6]	G	A	7.330e^-5	0.636	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	7.352e^-5	0.636	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8148270	2R_8148270_SNP [dm3] 2R_12260765_SNP [dm6]	A	G	7.367e^-5	0.636	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	6544144	3R_6544144_SNP [dm3] 3R_10718422_SNP [dm6]	G	A	7.399e^-5	0.636	INTERGENIC	TF binding site mE1_TFBS_inv
X	17620613	X_17620613_SNP [dm3] X_17726580_SNP [dm6]	T	C	7.419e^-5	0.636	INTRON CG42684
3L	8415533	3L_8415533_SNP [dm3] 3L_8422433_SNP [dm6]	T	G	7.475e^-5	0.636	UPSTREAM CG32354 INTERGENIC
2L	13842794	2L_13842794_SNP [dm3] 2L_13842794_SNP [dm6]	C	T	7.544e^-5	0.636	DOWNSTREAM CG33306 INTRON CenG1A
3R	25080196	3R_25080196_SNP [dm3] 3R_29254474_SNP [dm6]	C	G	7.551e^-5	0.636	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7044697	2L_7044697_SNP [dm3] 2L_7044697_SNP [dm6]	C	A	7.584e^-5	0.636	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9453819	X_9453819_DEL [dm3] X_9559786_DEL [dm6]	ATACAAATTTAAAA...	A	7.587e^-5	0.636	INTRON Cubn
2R	8170102	2R_8170102_SNP [dm3] 2R_12282597_SNP [dm6]	G	A	7.625e^-5	0.636	INTRON CG42700
3R	6539922	3R_6539922_SNP [dm3] 3R_10714200_SNP [dm6]	T	C	7.641e^-5	0.636	UPSTREAM CG4073 INTERGENIC
2R	8129519	2R_8129519_DEL [dm3] 2R_12242014_DEL [dm6]	TAAT	T	7.690e^-5	0.636	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	14506991	3R_14506991_SNP [dm3] 3R_18681269_SNP [dm6]	T	C	7.724e^-5	0.636	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	7.730e^-5	0.636	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	7.730e^-5	0.636	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	7.730e^-5	0.636	INTERGENIC
2L	20066236	2L_20066236_SNP [dm3] 2L_20066236_SNP [dm6]	A	T	7.925e^-5	0.638	UPSTREAM bwa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7633270	3R_7633270_SNP [dm3] 3R_11807548_SNP [dm6]	A	G	7.937e^-5	0.638	UPSTREAM ClC-a INTRON ClC-a
2R	14505099	2R_14505099_SNP [dm3] 2R_18617594_SNP [dm6]	G	T	7.943e^-5	0.638	SYNONYMOUS_CODING CG5493 UTR_3_PRIME CG5327
3L	9730655	3L_9730655_SNP [dm3] 3L_9737555_SNP [dm6]	C	T	7.966e^-5	0.638	INTRON CG42268
2R	8173240	2R_8173240_SNP [dm3] 2R_12285735_SNP [dm6]	T	A	7.969e^-5	0.638	UPSTREAM CG42700 INTRON CG42700
X	8201868	X_8201868_SNP [dm3] X_8307835_SNP [dm6]	G	T	7.979e^-5	0.638	INTRON nAChRalpha3
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	8.038e^-5	0.638	INTRON CG32791
3R	25186104	3R_25186104_SNP [dm3] 3R_29360382_SNP [dm6]	T	A	8.074e^-5	0.638	INTERGENIC
X	8632694	X_8632694_SNP [dm3] X_8738661_SNP [dm6]	G	A	8.149e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	8.179e^-5	0.638	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5416455	3L_5416455_SNP [dm3] 3L_5423355_SNP [dm6]	C	G	8.276e^-5	0.638	UPSTREAM CG34391 INTERGENIC
2R	8172592	2R_8172592_SNP [dm3] 2R_12285087_SNP [dm6]	C	G	8.317e^-5	0.638	UPSTREAM CG42700 INTRON CG42700
2R	8172696	2R_8172696_SNP [dm3] 2R_12285191_SNP [dm6]	T	C	8.317e^-5	0.638	UPSTREAM CG42700 INTRON CG42700
3R	25079023	3R_25079023_SNP [dm3] 3R_29253301_SNP [dm6]	T	A	8.343e^-5	0.638	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	8.410e^-5	0.638	UTR_3_PRIME Ack DOWNSTREAM Chd64
3R	9794894	3R_9794894_SNP [dm3] 3R_13969172_SNP [dm6]	G	A	8.471e^-5	0.638	UTR_3_PRIME rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15172028	2R_15172028_SNP [dm3] 2R_19284523_SNP [dm6]	C	A	8.485e^-5	0.638	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15172029	2R_15172029_SNP [dm3] 2R_19284524_SNP [dm6]	T	A	8.485e^-5	0.638	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9731033	3L_9731033_SNP [dm3] 3L_9737933_SNP [dm6]	C	T	8.503e^-5	0.638	INTRON CG42268
X	8631631	X_8631631_SNP [dm3] X_8737598_SNP [dm6]	C	T	8.587e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	8201646	X_8201646_SNP [dm3] X_8307613_SNP [dm6]	T	A	8.609e^-5	0.638	INTRON nAChRalpha3
2R	15171695	2R_15171695_SNP [dm3] 2R_19284190_SNP [dm6]	T	A	8.610e^-5	0.638	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	6542671	3R_6542671_SNP [dm3] 3R_10716949_SNP [dm6]	A	G	8.626e^-5	0.638	INTERGENIC
2R	18133491	2R_18133491_SNP [dm3] 2R_22245986_SNP [dm6]	A	T	8.641e^-5	0.638	INTRON dve
2R	8092915	2R_8092915_SNP [dm3] 2R_12205410_SNP [dm6]	C	G	8.657e^-5	0.638	UPSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8150527	2R_8150527_SNP [dm3] 2R_12263022_SNP [dm6]	T	C	8.675e^-5	0.638	INTRON Cam
3R	2172304	3R_2172304_SNP [dm3] 3R_6346582_SNP [dm6]	A	G	8.677e^-5	0.638	SYNONYMOUS_CODING CG18048 UPSTREAM SmD2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9410635	3L_9410635_SNP [dm3] 3L_9417535_SNP [dm6]	C	G	8.719e^-5	0.639	UPSTREAM CG3982 INTRON CG3967
3L	9410622	3L_9410622_SNP [dm3] 3L_9417522_SNP [dm6]	G	A	8.803e^-5	0.64	UPSTREAM CG3982 INTRON CG3967
2R	14852717	2R_14852717_SNP [dm3] 2R_18965212_SNP [dm6]	G	T	8.859e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	5416402	3L_5416402_SNP [dm3] 3L_5423302_SNP [dm6]	G	T	8.957e^-5	0.64	UPSTREAM CG34391 INTERGENIC
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	8.970e^-5	0.64	INTRON sNPF
3L	5416488	3L_5416488_SNP [dm3] 3L_5423388_SNP [dm6]	C	T	9.060e^-5	0.64	UPSTREAM CG34391 INTERGENIC
X	17504431	X_17504431_SNP [dm3] X_17610398_SNP [dm6]	T	A	9.075e^-5	0.64	INTERGENIC
3R	8237112	3R_8237112_SNP [dm3] 3R_12411390_SNP [dm6]	C	A	9.078e^-5	0.64	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10586117	3R_10586117_SNP [dm3] 3R_14760395_SNP [dm6]	A	T	9.086e^-5	0.64	INTRON jvl
2R	8178026	2R_8178026_SNP [dm3] 2R_12290521_SNP [dm6]	T	A	9.178e^-5	0.64	UPSTREAM CG42700 INTRON CG42700
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	9.189e^-5	0.64	SYNONYMOUS_CODING CG6282
3R	5306425	3R_5306425_SNP [dm3] 3R_9480703_SNP [dm6]	G	C	9.201e^-5	0.64	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8174711	2R_8174711_SNP [dm3] 2R_12287206_SNP [dm6]	G	T	9.233e^-5	0.64	INTRON CG42700
2R	8148264	2R_8148264_SNP [dm3] 2R_12260759_SNP [dm6]	A	G	9.256e^-5	0.64	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8174489	2R_8174489_SNP [dm3] 2R_12286984_SNP [dm6]	G	T	9.262e^-5	0.64	INTRON CG42700
X	9455690	X_9455690_SNP [dm3] X_9561657_SNP [dm6]	C	T	9.265e^-5	0.64	INTRON Cubn	TF binding site mE1_TFBS_chinmo
3R	25160538	3R_25160538_INS [dm3] 3R_29334816_INS [dm6]	T	TT	9.301e^-5	0.64	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	9.342e^-5	0.64	INTERGENIC
2R	9556418	2R_9556418_SNP [dm3] 2R_13668913_SNP [dm6]	C	T	9.344e^-5	0.64	SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16353348	2R_16353348_SNP [dm3] 2R_20465843_SNP [dm6]	G	A	9.418e^-5	0.642	INTRON CG12484
2R	8129551	2R_8129551_SNP [dm3] 2R_12242046_SNP [dm6]	C	A	9.486e^-5	0.642	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8164062	2R_8164062_SNP [dm3] 2R_12276557_SNP [dm6]	A	T	9.515e^-5	0.642	UTR_3_PRIME Cam
3L	9870418	3L_9870418_SNP [dm3] 3L_9877318_SNP [dm6]	A	G	9.528e^-5	0.642	DOWNSTREAM CR45406 INTERGENIC
2R	8148163	2R_8148163_SNP [dm3] 2R_12260658_SNP [dm6]	G	A	9.594e^-5	0.642	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8129629	2R_8129629_SNP [dm3] 2R_12242124_SNP [dm6]	A	T	9.721e^-5	0.642	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	20045100	2L_20045100_SNP [dm3] 2L_20045100_SNP [dm6]	A	G	9.741e^-5	0.642	INTRON sNPF	transposable element FlyBase
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	9.846e^-5	0.642	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
2R	18448596	2R_18448596_SNP [dm3] 2R_22561091_SNP [dm6]	A	G	9.870e^-5	0.642	UTR_5_PRIME px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	8178048	2R_8178048_SNP [dm3] 2R_12290543_SNP [dm6]	G	A	9.885e^-5	0.642	UPSTREAM CG42700 INTRON CG42700
2R	18133468	2R_18133468_SNP [dm3] 2R_22245963_SNP [dm6]	C	G	9.903e^-5	0.642	INTRON dve
3R	18182571	3R_18182571_SNP [dm3] 3R_22356849_SNP [dm6]	G	A	9.913e^-5	0.642	UTR_5_PRIME Sar1 UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	9.950e^-5	0.642	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8164790	2R_8164790_SNP [dm3] 2R_12277285_SNP [dm6]	G	C	1.000e^-4	0.642	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	6570391	3R_6570391_SNP [dm3] 3R_10744669_SNP [dm6]	T	A	1.001e^-4	0.642	INTRON TkR86C
2R	1032475	2R_1032475_MNP [dm3] 2R_5144970_MNP [dm6]	GCTG	AAAT	1.004e^-4	0.642	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18977187	2L_18977187_SNP [dm3] 2L_18977187_SNP [dm6]	A	T	1.004e^-4	0.642	UTR_3_PRIME CG10431 DOWNSTREAM Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8152809	3R_8152809_DEL [dm3] 3R_12327087_DEL [dm6]	GG	C	1.007e^-4	0.642	UPSTREAM CR45584 INTERGENIC
3L	5416514	3L_5416514_SNP [dm3] 3L_5423414_SNP [dm6]	G	A	1.008e^-4	0.642	UPSTREAM CG34391 INTERGENIC
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	1.012e^-4	0.642	INTERGENIC
X	13606565	X_13606565_SNP [dm3] X_13712532_SNP [dm6]	A	G	1.017e^-4	0.642	INTRON CG9940 & 1 other
X	13606606	X_13606606_SNP [dm3] X_13712573_SNP [dm6]	A	G	1.017e^-4	0.642	INTRON CG9940 & 1 other
3L	5416477	3L_5416477_SNP [dm3] 3L_5423377_SNP [dm6]	C	T	1.017e^-4	0.642	UPSTREAM CG34391 INTERGENIC
3R	23254137	3R_23254137_SNP [dm3] 3R_27428415_SNP [dm6]	T	C	1.028e^-4	0.643	INTRON side
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	1.029e^-4	0.643	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
2L	6887676	2L_6887676_SNP [dm3] 2L_6887676_SNP [dm6]	A	T	1.030e^-4	0.643	INTRON Nlg2
3L	9598165	3L_9598165_SNP [dm3] 3L_9605065_SNP [dm6]	A	G	1.036e^-4	0.643	SPLICE_SITE_REGION CG3280 INTRON CG3280
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	1.036e^-4	0.643	INTERGENIC
2R	3348458	2R_3348458_SNP [dm3] 2R_7460953_SNP [dm6]	T	C	1.041e^-4	0.644	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3L	12179180	3L_12179180_SNP [dm3] 3L_12186080_SNP [dm6]	A	G	1.048e^-4	0.646	INTRON CG6910
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	1.055e^-4	0.646	INTRON kek3
2R	18121524	2R_18121524_SNP [dm3] 2R_22234019_SNP [dm6]	C	T	1.056e^-4	0.646	INTERGENIC
3L	11266735	3L_11266735_SNP [dm3] 3L_11273635_SNP [dm6]	C	T	1.058e^-4	0.646	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14239911	2R_14239911_SNP [dm3] 2R_18352406_SNP [dm6]	A	C	1.064e^-4	0.647	INTRON sbb
3L	14668108	3L_14668108_SNP [dm3] 3L_14675008_SNP [dm6]	G	C	1.066e^-4	0.647	SYNONYMOUS_CODING CG4914 UPSTREAM tRNA:M3:70Fa DOWNSTREAM tRNA:M3:70Fb INTRON ome	TF binding site mE1_TFBS_sens
2R	16145990	2R_16145990_SNP [dm3] 2R_20258485_SNP [dm6]	A	G	1.071e^-4	0.648	NON_SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18072350	2R_18072350_SNP [dm3] 2R_22184845_SNP [dm6]	C	T	1.082e^-4	0.651	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8129543	2R_8129543_INS [dm3] 2R_12242038_INS [dm6]	T	TA	1.085e^-4	0.651	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
X	8201673	X_8201673_SNP [dm3] X_8307640_SNP [dm6]	C	T	1.092e^-4	0.651	INTRON nAChRalpha3
2R	15172086	2R_15172086_SNP [dm3] 2R_19284581_SNP [dm6]	G	A	1.097e^-4	0.651	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	1.099e^-4	0.651	INTERGENIC
2L	10939798	2L_10939798_SNP [dm3] 2L_10939798_SNP [dm6]	T	C	1.102e^-4	0.651	INTRON dpr2
3R	23022773	3R_23022773_SNP [dm3] 3R_27197051_SNP [dm6]	A	G	1.107e^-4	0.651	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8148358	2R_8148358_SNP [dm3] 2R_12260853_SNP [dm6]	T	A	1.110e^-4	0.651	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	2987318	3R_2987318_SNP [dm3] 3R_7161596_SNP [dm6]	G	A	1.112e^-4	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22048371	3R_22048371_SNP [dm3] 3R_26222649_SNP [dm6]	G	C	1.113e^-4	0.651	INTERGENIC
3L	10397390	3L_10397390_SNP [dm3] 3L_10404290_SNP [dm6]	G	A	1.114e^-4	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3348498	2R_3348498_SNP [dm3] 2R_7460993_SNP [dm6]	A	C	1.124e^-4	0.651	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3L	12689026	3L_12689026_DEL [dm3] 3L_12695926_DEL [dm6]	GGAGA	G	1.135e^-4	0.651	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15138016	2R_15138016_SNP [dm3] 2R_19250511_SNP [dm6]	C	A	1.135e^-4	0.651	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	1.137e^-4	0.651	INTERGENIC
3R	23237682	3R_23237682_SNP [dm3] 3R_27411960_SNP [dm6]	T	C	1.137e^-4	0.651	INTRON side
2R	8171218	2R_8171218_SNP [dm3] 2R_12283713_SNP [dm6]	G	A	1.140e^-4	0.651	INTRON CG42700
3L	5866870	3L_5866870_SNP [dm3] 3L_5873770_SNP [dm6]	T	A	1.143e^-4	0.651	NON_SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
3L	7286922	3L_7286922_SNP [dm3] 3L_7293822_SNP [dm6]	C	A	1.145e^-4	0.651	INTRON unc-13-4A
3R	21836042	3R_21836042_SNP [dm3] 3R_26010320_SNP [dm6]	T	C	1.148e^-4	0.651	UPSTREAM E_spl_malpha-BFM INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	25143237	3R_25143237_SNP [dm3] 3R_29317515_SNP [dm6]	A	T	1.150e^-4	0.651	SPLICE_SITE_REGION Cnx99A INTRON Cnx99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21675754	3R_21675754_SNP [dm3] 3R_25850032_SNP [dm6]	A	C	1.158e^-4	0.651	DOWNSTREAM CG14545 INTERGENIC
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	1.162e^-4	0.651	UPSTREAM CG10635 & 1 other INTERGENIC
3R	21702533	3R_21702533_DEL [dm3] 3R_25876811_DEL [dm6]	TCT	T	1.166e^-4	0.651	INTRON Tsp96F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13606629	X_13606629_SNP [dm3] X_13712596_SNP [dm6]	A	G	1.171e^-4	0.651	INTRON CG9940 & 1 other
3R	13103210	3R_13103210_SNP [dm3] 3R_17277488_SNP [dm6]	A	G	1.177e^-4	0.651	INTERGENIC
2L	19004399	2L_19004399_SNP [dm3] 2L_19004399_SNP [dm6]	A	C	1.177e^-4	0.651	SYNONYMOUS_CODING CG31793	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.185e^-4	0.651	INTRON fru
3L	6333247	3L_6333247_SNP [dm3] 3L_6340147_SNP [dm6]	T	C	1.186e^-4	0.651	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2R	8129546	2R_8129546_SNP [dm3] 2R_12242041_SNP [dm6]	C	T	1.190e^-4	0.651	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	4172749	3L_4172749_SNP [dm3] 3L_4172749_SNP [dm6]	A	G	1.193e^-4	0.651	SYNONYMOUS_CODING Ero1L
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	1.204e^-4	0.651	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10025854	2R_10025854_SNP [dm3] 2R_14138349_SNP [dm6]	T	G	1.210e^-4	0.651	INTRON Prosap
3R	11983348	3R_11983348_SNP [dm3] 3R_16157626_SNP [dm6]	T	A	1.217e^-4	0.651	UPSTREAM CG6006 INTRON CG6006
3L	1070548	3L_1070548_SNP [dm3] 3L_1070548_SNP [dm6]	C	T	1.218e^-4	0.651	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2R	8289969	2R_8289969_INS [dm3] 2R_12402464_INS [dm6]	A	AGAAAGTGATTATCACCAAC...	1.223e^-4	0.651	INTRON Cpr49Ae
2R	15131659	2R_15131659_SNP [dm3] 2R_19244154_SNP [dm6]	A	G	1.223e^-4	0.651	DOWNSTREAM cora INTERGENIC
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	1.223e^-4	0.651	INTERGENIC
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	1.226e^-4	0.651	INTRON salm
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	1.238e^-4	0.651	INTRON Cpr62Ba
3R	8164413	3R_8164413_SNP [dm3] 3R_12338691_SNP [dm6]	A	C	1.239e^-4	0.651	INTRON CR44941
3R	14507067	3R_14507067_SNP [dm3] 3R_18681345_SNP [dm6]	C	A	1.244e^-4	0.651	INTRON CG7708
3R	6546630	3R_6546630_SNP [dm3] 3R_10720908_SNP [dm6]	G	A	1.246e^-4	0.651	INTERGENIC
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	1.250e^-4	0.651	INTERGENIC
2R	8172388	2R_8172388_SNP [dm3] 2R_12284883_SNP [dm6]	C	G	1.252e^-4	0.651	INTRON CG42700
2L	16344161	2L_16344161_SNP [dm3] 2L_16344161_SNP [dm6]	T	A	1.265e^-4	0.651	UTR_3_PRIME chif INTRON chif & 1 other
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	1.267e^-4	0.651	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	1.267e^-4	0.651	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	1.267e^-4	0.651	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	1.267e^-4	0.651	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	1.267e^-4	0.651	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	1.267e^-4	0.651	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	1.267e^-4	0.651	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	1.267e^-4	0.651	SYNONYMOUS_CODING emb
3L	12174639	3L_12174639_SNP [dm3] 3L_12181539_SNP [dm6]	G	A	1.277e^-4	0.651	INTRON CAH2
2L	6887659	2L_6887659_SNP [dm3] 2L_6887659_SNP [dm6]	T	C	1.279e^-4	0.651	INTRON Nlg2
2L	14915492	2L_14915492_SNP [dm3] 2L_14915492_SNP [dm6]	G	T	1.282e^-4	0.651	INTRON CG42313
2R	8176594	2R_8176594_SNP [dm3] 2R_12289089_SNP [dm6]	C	G	1.288e^-4	0.651	INTRON CG42700
2R	8158259	2R_8158259_SNP [dm3] 2R_12270754_SNP [dm6]	G	A	1.300e^-4	0.651	INTRON Cam	TF binding site mE1_TFBS_zfh1
3R	22054251	3R_22054251_SNP [dm3] 3R_26228529_SNP [dm6]	A	G	1.301e^-4	0.651	INTERGENIC
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	1.303e^-4	0.651	INTRON TkR86C
3L	1070509	3L_1070509_SNP [dm3] 3L_1070509_SNP [dm6]	T	G	1.310e^-4	0.651	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	1.312e^-4	0.651	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
2R	15171693	2R_15171693_SNP [dm3] 2R_19284188_SNP [dm6]	T	G	1.312e^-4	0.651	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	1.314e^-4	0.651	INTRON Dscam4
2L	652024	2L_652024_SNP [dm3] 2L_652024_SNP [dm6]	C	T	1.315e^-4	0.651	INTRON ds
2R	6387735	2R_6387735_SNP [dm3] 2R_10500230_SNP [dm6]	A	G	1.315e^-4	0.651	UTR_3_PRIME lola INTRON lola
2R	15171652	2R_15171652_SNP [dm3] 2R_19284147_SNP [dm6]	G	A	1.327e^-4	0.651	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	16344193	2L_16344193_SNP [dm3] 2L_16344193_SNP [dm6]	T	A	1.331e^-4	0.651	UTR_3_PRIME chif INTRON chif & 1 other	TF binding site mE1_TFBS_cad
2L	20968253	2L_20968253_SNP [dm3] 2L_20968253_SNP [dm6]	A	T	1.336e^-4	0.651	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	14916853	2L_14916853_SNP [dm3] 2L_14916853_SNP [dm6]	T	A	1.336e^-4	0.651	INTRON CG42313
3L	15645519	3L_15645519_SNP [dm3] 3L_15652419_SNP [dm6]	G	A	1.342e^-4	0.651	UPSTREAM Eig71Ed & 1 other INTERGENIC
2L	5187526	2L_5187526_SNP [dm3] 2L_5187526_SNP [dm6]	C	T	1.344e^-4	0.651	UPSTREAM snoRNA:Psi28S-2263 DOWNSTREAM Msp300 INTRON Msp300
2R	17364145	2R_17364145_SNP [dm3] 2R_21476640_SNP [dm6]	A	G	1.350e^-4	0.651	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	1.355e^-4	0.651	UPSTREAM CG44403 INTRON CG10936
2R	15171687	2R_15171687_SNP [dm3] 2R_19284182_SNP [dm6]	A	G	1.362e^-4	0.651	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	14944137	2L_14944137_SNP [dm3] 2L_14944137_SNP [dm6]	T	C	1.367e^-4	0.651	INTRON CG42313
3R	6542694	3R_6542694_SNP [dm3] 3R_10716972_SNP [dm6]	G	A	1.371e^-4	0.651	INTERGENIC
2R	8188143	2R_8188143_SNP [dm3] 2R_12300638_SNP [dm6]	C	T	1.378e^-4	0.651	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3750989	2L_3750989_SNP [dm3] 2L_3750989_SNP [dm6]	G	C	1.381e^-4	0.651	INTRON CG10019
2R	19549576	2R_19549576_SNP [dm3] 2R_23662053_SNP [dm6]	A	G	1.382e^-4	0.651	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
2R	8167238	2R_8167238_SNP [dm3] 2R_12279733_SNP [dm6]	T	G	1.385e^-4	0.651	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12974546	2R_12974546_SNP [dm3] 2R_17087041_SNP [dm6]	A	T	1.388e^-4	0.651	INTRON CG30460	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	10385493	3L_10385493_SNP [dm3] 3L_10392393_SNP [dm6]	A	C	1.391e^-4	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14911082	2L_14911082_SNP [dm3] 2L_14911082_SNP [dm6]	T	C	1.405e^-4	0.651	INTRON CG42313
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	1.405e^-4	0.651	INTRON CG3726
3L	11450272	3L_11450272_SNP [dm3] 3L_11457172_SNP [dm6]	G	A	1.408e^-4	0.651	NON_SYNONYMOUS_CODING CG12289
2L	6157701	2L_6157701_SNP [dm3] 2L_6157701_SNP [dm6]	T	C	1.409e^-4	0.651	INTERGENIC
3R	23161952	3R_23161952_SNP [dm3] 3R_27336230_SNP [dm6]	C	T	1.412e^-4	0.651	INTERGENIC
3R	13307719	3R_13307719_SNP [dm3] 3R_17481997_SNP [dm6]	G	A	1.415e^-4	0.651	SPLICE_SITE_REGION Dscam3 DOWNSTREAM Dscam3 INTRON Dscam3
2L	7073945	2L_7073945_SNP [dm3] 2L_7073945_SNP [dm6]	T	C	1.417e^-4	0.651	INTRON Pvf2
2R	8148187	2R_8148187_SNP [dm3] 2R_12260682_SNP [dm6]	A	G	1.418e^-4	0.651	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	8439668	3R_8439668_SNP [dm3] 3R_12613946_SNP [dm6]	T	A	1.421e^-4	0.651	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14950729	2L_14950729_SNP [dm3] 2L_14950729_SNP [dm6]	T	C	1.428e^-4	0.651	INTRON CG42313
3R	10212048	3R_10212048_SNP [dm3] 3R_14386326_SNP [dm6]	T	A	1.428e^-4	0.651	INTERGENIC
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	1.429e^-4	0.651	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	1.432e^-4	0.651	INTRON sNPF
2R	15171647	2R_15171647_SNP [dm3] 2R_19284142_SNP [dm6]	T	A	1.434e^-4	0.651	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2818699	2L_2818699_SNP [dm3] 2L_2818699_SNP [dm6]	C	T	1.439e^-4	0.651	NON_SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16353362	2R_16353362_SNP [dm3] 2R_20465857_SNP [dm6]	G	A	1.444e^-4	0.651	INTRON CG12484
3L	5361956	3L_5361956_SNP [dm3] 3L_5368856_SNP [dm6]	C	A	1.448e^-4	0.651	UPSTREAM CG10635 & 1 other INTERGENIC
3R	22355608	3R_22355608_SNP [dm3] 3R_26529886_SNP [dm6]	T	A	1.451e^-4	0.651	INTRON plum
2R	9960552	2R_9960552_SNP [dm3] 2R_14073047_SNP [dm6]	G	T	1.452e^-4	0.651	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	19251764	2L_19251764_SNP [dm3] 2L_19251764_SNP [dm6]	A	G	1.455e^-4	0.651	INTERGENIC
X	7778968	X_7778968_SNP [dm3] X_7884935_SNP [dm6]	C	A	1.457e^-4	0.651	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	1.464e^-4	0.651	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3R	18182514	3R_18182514_SNP [dm3] 3R_22356792_SNP [dm6]	A	C	1.468e^-4	0.651	UTR_5_PRIME Sar1 UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	6574413	3R_6574413_SNP [dm3] 3R_10748691_SNP [dm6]	G	C	1.470e^-4	0.651	INTRON TkR86C
3R	22054266	3R_22054266_SNP [dm3] 3R_26228544_SNP [dm6]	C	T	1.471e^-4	0.651	INTERGENIC
3R	16835535	3R_16835535_SNP [dm3] 3R_21009813_SNP [dm6]	G	A	1.471e^-4	0.651	UTR_3_PRIME Calx INTRON Calx
3R	20452043	3R_20452043_SNP [dm3] 3R_24626321_SNP [dm6]	G	A	1.473e^-4	0.651	UPSTREAM Syx18 DOWNSTREAM Wsck INTRON atl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	14264623	2R_14264623_SNP [dm3] 2R_18377118_SNP [dm6]	A	G	1.475e^-4	0.651	UPSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9795071	3R_9795071_SNP [dm3] 3R_13969349_SNP [dm6]	C	G	1.476e^-4	0.651	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	7036877	2R_7036877_SNP [dm3] 2R_11149372_SNP [dm6]	T	A	1.477e^-4	0.651	NON_SYNONYMOUS_CODING CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	1.478e^-4	0.651	INTERGENIC
2R	17349016	2R_17349016_DEL [dm3] 2R_21461511_DEL [dm6]	GCCAAGTGTTGTGAAAAGGG...	C	1.480e^-4	0.651	INTRON Sdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	1.482e^-4	0.651	INTRON CG42313
3R	5429827	3R_5429827_SNP [dm3] 3R_9604105_SNP [dm6]	G	A	1.490e^-4	0.651	INTRON CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	16196031	2L_16196031_DEL [dm3] 2L_16196031_DEL [dm6]	TT	T	1.491e^-4	0.651	UPSTREAM CR44734 EXON CR44735	TF binding site mE1_TFBS_HSA
2L	4390050	2L_4390050_SNP [dm3] 2L_4390050_SNP [dm6]	A	T	1.492e^-4	0.651	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8147320	2R_8147320_SNP [dm3] 2R_12259815_SNP [dm6]	G	A	1.498e^-4	0.651	UPSTREAM Cam INTRON Cam & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9858621	3L_9858621_DEL [dm3] 3L_9865521_DEL [dm6]	CAG	C	1.500e^-4	0.651	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
2L	528185	2L_528185_SNP [dm3] 2L_528185_SNP [dm6]	G	A	1.519e^-4	0.652	INTRON ush	regulatory region REDfly_CRMs
X	10590397	X_10590397_DEL [dm3] X_10696364_DEL [dm6]	ATGTTGCGCA	A	1.523e^-4	0.652	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3880414	2L_3880414_SNP [dm3] 2L_3880414_SNP [dm6]	A	G	1.525e^-4	0.652	UPSTREAM capu INTRON capu
2R	9582999	2R_9582999_SNP [dm3] 2R_13695494_SNP [dm6]	A	G	1.526e^-4	0.652	INTRON fas
2R	8146837	2R_8146837_SNP [dm3] 2R_12259332_SNP [dm6]	C	T	1.527e^-4	0.652	UPSTREAM Cam & 1 other DOWNSTREAM Vha36-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14756323	2R_14756323_SNP [dm3] 2R_18868818_SNP [dm6]	C	T	1.528e^-4	0.652	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2L	15401201	2L_15401201_SNP [dm3] 2L_15401201_SNP [dm6]	G	A	1.529e^-4	0.652	UPSTREAM CR45374 INTERGENIC
2R	14222040	2R_14222040_INS [dm3] 2R_18334535_INS [dm6]	A	AAAATCACATA...	1.530e^-4	0.652	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8172475	2R_8172475_SNP [dm3] 2R_12284970_SNP [dm6]	G	A	1.543e^-4	0.656	INTRON CG42700
3L	7448754	3L_7448754_SNP [dm3] 3L_7455654_SNP [dm6]	C	T	1.552e^-4	0.658	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	3889181	3L_3889181_DEL [dm3] 3L_3889181_DEL [dm6]	TAC	T	1.560e^-4	0.66	INTERGENIC
3R	11599774	3R_11599774_SNP [dm3] 3R_15774052_SNP [dm6]	C	T	1.563e^-4	0.66	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
2R	1032480	2R_1032480_SNP [dm3] 2R_5144975_SNP [dm6]	C	G	1.571e^-4	0.661	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17620707	X_17620707_SNP [dm3] X_17726674_SNP [dm6]	C	G	1.572e^-4	0.661	INTRON CG42684
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	1.588e^-4	0.664	EXON CR44942	TF binding site BDTNP1_TFBS_twi
2R	8143235	2R_8143235_SNP [dm3] 2R_12255730_SNP [dm6]	T	A	1.589e^-4	0.664	DOWNSTREAM CG13168 INTERGENIC
2L	1609975	2L_1609975_SNP [dm3] 2L_1609975_SNP [dm6]	C	G	1.595e^-4	0.664	NON_SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad
3L	10177300	3L_10177300_SNP [dm3] 3L_10184200_SNP [dm6]	G	C	1.595e^-4	0.664	INTRON dpr10
2R	18362873	2R_18362873_SNP [dm3] 2R_22475368_SNP [dm6]	A	G	1.596e^-4	0.664	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3R	26174403	3R_26174403_SNP [dm3] 3R_30348681_SNP [dm6]	T	G	1.600e^-4	0.664	INTRON hdc
2L	14918231	2L_14918231_SNP [dm3] 2L_14918231_SNP [dm6]	C	T	1.614e^-4	0.666	INTRON CG42313
X	5815054	X_5815054_SNP [dm3] X_5921021_SNP [dm6]	T	A	1.616e^-4	0.666	INTRON CG3726
2L	4390054	2L_4390054_SNP [dm3] 2L_4390054_SNP [dm6]	T	G	1.620e^-4	0.666	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14884588	2R_14884588_SNP [dm3] 2R_18997083_SNP [dm6]	A	G	1.627e^-4	0.666	INTRON tn	TF binding site mE1_TFBS_cad
3R	27138310	3R_27138310_DEL [dm3] 3R_31312588_DEL [dm6]	TTCTTGCAACAGCAACATTA...	T	1.629e^-4	0.666	INTRON CG34347
3R	27138346	3R_27138346_SNP [dm3] 3R_31312624_SNP [dm6]	C	A	1.629e^-4	0.666	INTRON CG34347
2R	11214596	2R_11214596_SNP [dm3] 2R_15327091_SNP [dm6]	T	C	1.632e^-4	0.666	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
2L	22672024	2L_22672024_DEL [dm3] 2L_22779292_DEL [dm6]	AA	A	1.634e^-4	0.666	INTERGENIC
3R	6040490	3R_6040490_SNP [dm3] 3R_10214768_SNP [dm6]	G	T	1.637e^-4	0.666	INTRON Syn
2R	17364053	2R_17364053_SNP [dm3] 2R_21476548_SNP [dm6]	T	A	1.649e^-4	0.668	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8201703	X_8201703_INS [dm3] X_8307670_INS [dm6]	T	TGGAATTATCTCCTGCTGAT...	1.651e^-4	0.668	INTRON nAChRalpha3
2R	8174256	2R_8174256_SNP [dm3] 2R_12286751_SNP [dm6]	A	C	1.658e^-4	0.668	INTRON CG42700
2L	15401074	2L_15401074_SNP [dm3] 2L_15401074_SNP [dm6]	T	A	1.660e^-4	0.668	UPSTREAM CR45374 INTERGENIC
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	1.663e^-4	0.668	INTRON CG42313
2R	8891947	2R_8891947_SNP [dm3] 2R_13004442_SNP [dm6]	A	T	1.665e^-4	0.668	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	1.666e^-4	0.668	INTRON CG33144
2L	8224915	2L_8224915_SNP [dm3] 2L_8224915_SNP [dm6]	G	A	1.675e^-4	0.669	SYNONYMOUS_CODING Pvr
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.677e^-4	0.669	INTERGENIC
3R	8108735	3R_8108735_SNP [dm3] 3R_12283013_SNP [dm6]	A	G	1.686e^-4	0.671	INTRON svp
2R	20109723	2R_20109723_SNP [dm3] 2R_24222200_SNP [dm6]	C	T	1.691e^-4	0.671	INTRON CG30419
2R	18199780	2R_18199780_SNP [dm3] 2R_22312275_SNP [dm6]	A	C	1.697e^-4	0.671	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15173822	2R_15173822_SNP [dm3] 2R_19286317_SNP [dm6]	G	T	1.698e^-4	0.671	SYNONYMOUS_CODING CG10474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	1.698e^-4	0.671	INTRON CR45668	TF binding site mE1_TFBS_zfh1
3R	27139170	3R_27139170_SNP [dm3] 3R_31313448_SNP [dm6]	G	T	1.707e^-4	0.671	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17985747	2R_17985747_SNP [dm3] 2R_22098242_SNP [dm6]	G	T	1.709e^-4	0.671	INTRON CG11073
2L	581350	2L_581350_SNP [dm3] 2L_581350_SNP [dm6]	C	A	1.709e^-4	0.671	INTERGENIC
2R	7051200	2R_7051200_SNP [dm3] 2R_11163695_SNP [dm6]	C	A	1.720e^-4	0.672	INTRON shn & 1 other
2L	2549863	2L_2549863_SNP [dm3] 2L_2549863_SNP [dm6]	A	G	1.722e^-4	0.672	INTERGENIC
3R	18182582	3R_18182582_SNP [dm3] 3R_22356860_SNP [dm6]	T	C	1.729e^-4	0.672	UTR_5_PRIME Sar1 UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	1.731e^-4	0.672	INTRON H2.0
2R	8129513	2R_8129513_SNP [dm3] 2R_12242008_SNP [dm6]	T	C	1.732e^-4	0.672	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8289964	2R_8289964_INS [dm3] 2R_12402459_INS [dm6]	G	GTG	1.734e^-4	0.672	INTRON Cpr49Ae
3R	17214221	3R_17214221_SNP [dm3] 3R_21388499_SNP [dm6]	G	T	1.741e^-4	0.672	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	1.742e^-4	0.672	INTRON Octbeta3R
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	1.750e^-4	0.674	INTRON fas
3L	6546810	3L_6546810_SNP [dm3] 3L_6553710_SNP [dm6]	T	A	1.758e^-4	0.675	INTRON CG18769
3R	2492744	3R_2492744_SNP [dm3] 3R_6667022_SNP [dm6]	G	A	1.759e^-4	0.675	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13606599	X_13606599_SNP [dm3] X_13712566_SNP [dm6]	G	A	1.763e^-4	0.675	INTRON CG9940 & 1 other
3R	27165408	3R_27165408_SNP [dm3] 3R_31339686_SNP [dm6]	C	G	1.775e^-4	0.678	INTRON CG34347
3L	11625904	3L_11625904_SNP [dm3] 3L_11632804_SNP [dm6]	T	C	1.791e^-4	0.682	INTRON CG32091 EXON CR45158
3R	8234000	3R_8234000_SNP [dm3] 3R_12408278_SNP [dm6]	A	G	1.795e^-4	0.682	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	8139251	2R_8139251_SNP [dm3] 2R_12251746_SNP [dm6]	G	C	1.799e^-4	0.682	INTERGENIC
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	1.809e^-4	0.682	INTRON Octbeta3R
3R	6540118	3R_6540118_SNP [dm3] 3R_10714396_SNP [dm6]	T	C	1.809e^-4	0.682	UPSTREAM CG4073 INTERGENIC
2R	15160635	2R_15160635_SNP [dm3] 2R_19273130_SNP [dm6]	G	C	1.817e^-4	0.682	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15171736	2R_15171736_SNP [dm3] 2R_19284231_SNP [dm6]	G	T	1.819e^-4	0.682	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	1.822e^-4	0.682	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8150171	2R_8150171_SNP [dm3] 2R_12262666_SNP [dm6]	C	T	1.827e^-4	0.682	INTRON Cam	TF binding site BDTNP1_TFBS_dl
3L	11118294	3L_11118294_SNP [dm3] 3L_11125194_SNP [dm6]	G	T	1.827e^-4	0.682	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	8289946	2R_8289946_SNP [dm3] 2R_12402441_SNP [dm6]	A	G	1.829e^-4	0.682	INTRON Cpr49Ae
2R	15160839	2R_15160839_SNP [dm3] 2R_19273334_SNP [dm6]	A	G	1.830e^-4	0.682	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8197015	2R_8197015_SNP [dm3] 2R_12309510_SNP [dm6]	T	A	1.849e^-4	0.684	NON_SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	1.854e^-4	0.684	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	11599756	3R_11599756_SNP [dm3] 3R_15774034_SNP [dm6]	A	G	1.855e^-4	0.684	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
2R	18073941	2R_18073941_SNP [dm3] 2R_22186436_SNP [dm6]	T	A	1.866e^-4	0.684	DOWNSTREAM MED16 INTRON Vps35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3000526	2L_3000526_INS [dm3] 2L_3000526_INS [dm6]	G	GAGG	1.868e^-4	0.684	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23887526	3R_23887526_SNP [dm3] 3R_28061804_SNP [dm6]	G	C	1.871e^-4	0.684	INTRON CG34362
2L	20034659	2L_20034659_SNP [dm3] 2L_20034659_SNP [dm6]	G	T	1.877e^-4	0.684	INTRON sNPF
3R	9795074	3R_9795074_SNP [dm3] 3R_13969352_SNP [dm6]	C	A	1.880e^-4	0.684	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12185544	3L_12185544_SNP [dm3] 3L_12192444_SNP [dm6]	A	G	1.882e^-4	0.684	UTR_3_PRIME Est-P DOWNSTREAM thoc6 INTRON thoc6
2R	8160865	2R_8160865_SNP [dm3] 2R_12273360_SNP [dm6]	A	C	1.882e^-4	0.684	INTRON Cam
3L	5361910	3L_5361910_INS [dm3] 3L_5368810_INS [dm6]	C	CCGTTGGCAGCTTAGGAATT...	1.891e^-4	0.684	UPSTREAM CG10635 & 1 other INTERGENIC
2L	4012518	2L_4012518_SNP [dm3] 2L_4012518_SNP [dm6]	G	A	1.900e^-4	0.684	INTERGENIC
2R	6462227	2R_6462227_SNP [dm3] 2R_10574722_SNP [dm6]	A	G	1.901e^-4	0.684	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6406961	2R_6406961_SNP [dm3] 2R_10519456_SNP [dm6]	C	T	1.903e^-4	0.684	DOWNSTREAM lola INTRON lola
3R	23500234	3R_23500234_SNP [dm3] 3R_27674512_SNP [dm6]	C	T	1.906e^-4	0.684	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	7039005	2R_7039005_SNP [dm3] 2R_11151500_SNP [dm6]	A	G	1.906e^-4	0.684	INTRON CG13229
X	1266374	X_1266374_SNP [dm3] X_1372341_SNP [dm6]	G	C	1.911e^-4	0.684	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18236089	2R_18236089_SNP [dm3] 2R_22348584_SNP [dm6]	C	T	1.912e^-4	0.684	NON_SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
2R	8148217	2R_8148217_SNP [dm3] 2R_12260712_SNP [dm6]	T	A	1.915e^-4	0.684	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	23185031	3R_23185031_INS [dm3] 3R_27359309_INS [dm6]	T	TGCACGCT	1.915e^-4	0.684	UPSTREAM CG42534 INTRON CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8580322	2R_8580322_SNP [dm3] 2R_12692817_SNP [dm6]	C	T	1.923e^-4	0.684	UPSTREAM CG8768 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	8512857	3R_8512857_SNP [dm3] 3R_12687135_SNP [dm6]	T	C	1.928e^-4	0.684	INTRON kar	TF binding site mE1_TFBS_cad
2R	18073490	2R_18073490_SNP [dm3] 2R_22185985_SNP [dm6]	A	T	1.931e^-4	0.684	UTR_5_PRIME Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13842755	2L_13842755_SNP [dm3] 2L_13842755_SNP [dm6]	T	C	1.941e^-4	0.684	DOWNSTREAM CG33306 INTRON CenG1A
X	1266464	X_1266464_SNP [dm3] X_1372431_SNP [dm6]	T	C	1.946e^-4	0.684	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	1.946e^-4	0.684	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	16293581	2R_16293581_SNP [dm3] 2R_20406076_SNP [dm6]	G	A	1.949e^-4	0.684	INTERGENIC
3R	17973635	3R_17973635_SNP [dm3] 3R_22147913_SNP [dm6]	G	A	1.952e^-4	0.684	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	1.953e^-4	0.684	INTRON fas
2R	5025099	2R_5025099_SNP [dm3] 2R_9137594_SNP [dm6]	G	T	1.959e^-4	0.684	SYNONYMOUS_CODING alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	84176	3R_84176_SNP [dm3] 3R_4258454_SNP [dm6]	C	T	1.959e^-4	0.684	DOWNSTREAM Or82a INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15459159	2L_15459159_SNP [dm3] 2L_15459159_SNP [dm6]	G	A	1.959e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9165778	2R_9165778_SNP [dm3] 2R_13278273_SNP [dm6]	T	A	1.968e^-4	0.684	INTRON Dh31-R
3R	21736718	3R_21736718_SNP [dm3] 3R_25910996_SNP [dm6]	A	G	1.973e^-4	0.684	INTRON CG42235
2R	15176003	2R_15176003_SNP [dm3] 2R_19288498_SNP [dm6]	A	C	1.980e^-4	0.684	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	1.989e^-4	0.684	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	1.989e^-4	0.684	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
2R	9960654	2R_9960654_SNP [dm3] 2R_14073149_SNP [dm6]	A	T	1.993e^-4	0.684	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	1.995e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1645142	2L_1645142_SNP [dm3] 2L_1645142_SNP [dm6]	A	T	1.997e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25140268	3R_25140268_SNP [dm3] 3R_29314546_SNP [dm6]	T	G	2.002e^-4	0.684	DOWNSTREAM Cnx99A INTERGENIC
3R	25121877	3R_25121877_SNP [dm3] 3R_29296155_SNP [dm6]	G	A	2.006e^-4	0.684	SYNONYMOUS_CODING CG14506
3R	2269995	3R_2269995_SNP [dm3] 3R_6444273_SNP [dm6]	C	A	2.007e^-4	0.684	SYNONYMOUS_CODING gpp
X	12144773	X_12144773_SNP [dm3] X_12250740_SNP [dm6]	A	G	2.008e^-4	0.684	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1835643	2R_1835643_SNP [dm3] 2R_5948138_SNP [dm6]	G	T	2.016e^-4	0.684	INTERGENIC
2R	5976590	2R_5976590_SNP [dm3] 2R_10089085_SNP [dm6]	G	C	2.018e^-4	0.684	INTRON CG2269
2R	7474813	2R_7474813_SNP [dm3] 2R_11587308_SNP [dm6]	G	A	2.018e^-4	0.684	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3L	12351616	3L_12351616_SNP [dm3] 3L_12358516_SNP [dm6]	G	A	2.018e^-4	0.684	INTERGENIC
3L	6548115	3L_6548115_SNP [dm3] 3L_6555015_SNP [dm6]	T	C	2.018e^-4	0.684	INTRON CG18769
2R	15173718	2R_15173718_SNP [dm3] 2R_19286213_SNP [dm6]	T	G	2.018e^-4	0.684	NON_SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8179010	2R_8179010_SNP [dm3] 2R_12291505_SNP [dm6]	C	A	2.031e^-4	0.684	INTRON CG42700
2R	8150146	2R_8150146_SNP [dm3] 2R_12262641_SNP [dm6]	G	A	2.032e^-4	0.684	INTRON Cam	TF binding site BDTNP1_TFBS_dl
3R	18167226	3R_18167226_SNP [dm3] 3R_22341504_SNP [dm6]	G	A	2.033e^-4	0.684	INTRON CG5386
2R	9964065	2R_9964065_SNP [dm3] 2R_14076560_SNP [dm6]	G	T	2.037e^-4	0.684	INTRON Prosap
2R	16353380	2R_16353380_SNP [dm3] 2R_20465875_SNP [dm6]	C	A	2.041e^-4	0.684	INTRON CG12484
2L	15945046	2L_15945046_SNP [dm3] 2L_15945046_SNP [dm6]	C	T	2.041e^-4	0.684	INTRON beat-Ib
3L	10895769	3L_10895769_SNP [dm3] 3L_10902669_SNP [dm6]	C	G	2.043e^-4	0.684	INTERGENIC
3R	23884719	3R_23884719_SNP [dm3] 3R_28058997_SNP [dm6]	G	A	2.046e^-4	0.684	INTRON CG34362
2L	14998945	2L_14998945_SNP [dm3] 2L_14998945_SNP [dm6]	A	G	2.049e^-4	0.684	INTERGENIC
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	2.052e^-4	0.684	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	6739312	3R_6739312_SNP [dm3] 3R_10913590_SNP [dm6]	C	A	2.071e^-4	0.688	INTERGENIC
2L	15625328	2L_15625328_SNP [dm3] 2L_15625328_SNP [dm6]	T	G	2.073e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1523200	3L_1523200_SNP [dm3] 3L_1523200_SNP [dm6]	A	T	2.079e^-4	0.688	UTR_3_PRIME Psa DOWNSTREAM CG12090
2L	5812993	2L_5812993_SNP [dm3] 2L_5812993_SNP [dm6]	A	C	2.081e^-4	0.688	INTERGENIC
3R	10736197	3R_10736197_SNP [dm3] 3R_14910475_SNP [dm6]	A	C	2.083e^-4	0.688	INTERGENIC
2L	15460146	2L_15460146_SNP [dm3] 2L_15460146_SNP [dm6]	T	C	2.088e^-4	0.688	INTERGENIC
2R	8157022	2R_8157022_SNP [dm3] 2R_12269517_SNP [dm6]	T	C	2.091e^-4	0.688	INTRON Cam
3R	23465528	3R_23465528_SNP [dm3] 3R_27639806_SNP [dm6]	T	C	2.097e^-4	0.688	UTR_3_PRIME Mtl DOWNSTREAM tau & 1 other
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	2.104e^-4	0.688	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	2.107e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7847698	3L_7847698_SNP [dm3] 3L_7854598_SNP [dm6]	T	A	2.108e^-4	0.688	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2165538	3R_2165538_SNP [dm3] 3R_6339816_SNP [dm6]	C	A	2.109e^-4	0.688	UPSTREAM Osi20 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8178527	2R_8178527_SNP [dm3] 2R_12291022_SNP [dm6]	C	T	2.113e^-4	0.688	INTRON CG42700
2L	1645119	2L_1645119_SNP [dm3] 2L_1645119_SNP [dm6]	C	T	2.118e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6594070	3R_6594070_SNP [dm3] 3R_10768348_SNP [dm6]	G	T	2.123e^-4	0.689	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta	TF binding site mE1_TFBS_HSA
2R	3344958	2R_3344958_INS [dm3] 2R_7457453_INS [dm6]	A	ATGATGATGATTGC...	2.130e^-4	0.689	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5927417	3L_5927417_SNP [dm3] 3L_5934317_SNP [dm6]	A	T	2.132e^-4	0.689	NON_SYNONYMOUS_CODING CG33993
2L	19251795	2L_19251795_SNP [dm3] 2L_19251795_SNP [dm6]	G	T	2.140e^-4	0.689	INTERGENIC
2R	8145003	2R_8145003_SNP [dm3] 2R_12257498_SNP [dm6]	T	G	2.141e^-4	0.689	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
3R	6528690	3R_6528690_SNP [dm3] 3R_10702968_SNP [dm6]	A	G	2.143e^-4	0.689	SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
3R	8102513	3R_8102513_SNP [dm3] 3R_12276791_SNP [dm6]	C	T	2.167e^-4	0.694	INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6575773	X_6575773_SNP [dm3] X_6681740_SNP [dm6]	T	C	2.167e^-4	0.694	UTR_3_PRIME l_1_G0255 UPSTREAM CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8176157	2R_8176157_SNP [dm3] 2R_12288652_SNP [dm6]	G	A	2.176e^-4	0.694	INTRON CG42700
3L	521879	3L_521879_SNP [dm3] 3L_521879_SNP [dm6]	T	G	2.177e^-4	0.694	INTRON klar
2R	7049962	2R_7049962_SNP [dm3] 2R_11162457_SNP [dm6]	T	C	2.184e^-4	0.694	INTRON shn & 1 other
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	2.189e^-4	0.694	INTRON CG34355
X	2251245	X_2251245_SNP [dm3] X_2357212_SNP [dm6]	C	A	2.189e^-4	0.694	INTRON ptr	TF binding site BDTNP1_TFBS_da
2R	9378723	2R_9378723_SNP [dm3] 2R_13491218_SNP [dm6]	G	A	2.190e^-4	0.694	INTRON bbc
2R	14756326	2R_14756326_SNP [dm3] 2R_18868821_SNP [dm6]	A	G	2.191e^-4	0.694	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
3L	13369853	3L_13369853_SNP [dm3] 3L_13376753_SNP [dm6]	A	C	2.202e^-4	0.694	INTERGENIC
3R	25162457	3R_25162457_SNP [dm3] 3R_29336735_SNP [dm6]	G	T	2.202e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9094890	3L_9094890_SNP [dm3] 3L_9101790_SNP [dm6]	C	T	2.206e^-4	0.694	UTR_3_PRIME bol
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	2.212e^-4	0.694	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3R	23900528	3R_23900528_DEL [dm3] 3R_28074806_DEL [dm6]	GCAAT	G	2.215e^-4	0.694	INTRON CG34362
3L	15293045	3L_15293045_SNP [dm3] 3L_15299945_SNP [dm6]	C	T	2.218e^-4	0.694	SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
2R	9186948	2R_9186948_SNP [dm3] 2R_13299443_SNP [dm6]	C	T	2.220e^-4	0.694	START_GAINED CG17047 UTR_5_PRIME CG17047 UPSTREAM CG4734 & 1 other
3R	10439639	3R_10439639_SNP [dm3] 3R_14613917_SNP [dm6]	G	A	2.224e^-4	0.694	UTR_5_PRIME CG14853 INTRON CG14853
2R	8177570	2R_8177570_SNP [dm3] 2R_12290065_SNP [dm6]	A	G	2.231e^-4	0.694	UPSTREAM CG42700 INTRON CG42700
3R	10634088	3R_10634088_SNP [dm3] 3R_14808366_SNP [dm6]	A	C	2.231e^-4	0.694	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12866198	2R_12866198_SNP [dm3] 2R_16978693_SNP [dm6]	T	C	2.246e^-4	0.694	INTRON Cbp53E
2R	8145252	2R_8145252_SNP [dm3] 2R_12257747_SNP [dm6]	G	C	2.248e^-4	0.694	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
X	17300696	X_17300696_SNP [dm3] X_17406663_SNP [dm6]	T	A	2.259e^-4	0.694	INTERGENIC
2L	14916906	2L_14916906_SNP [dm3] 2L_14916906_SNP [dm6]	A	T	2.271e^-4	0.694	INTRON CG42313
2R	8138745	2R_8138745_SNP [dm3] 2R_12251240_SNP [dm6]	G	C	2.272e^-4	0.694	INTERGENIC
2L	7072868	2L_7072868_SNP [dm3] 2L_7072868_SNP [dm6]	A	T	2.272e^-4	0.694	INTRON Pvf2
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	2.278e^-4	0.694	INTERGENIC
3L	9858799	3L_9858799_SNP [dm3] 3L_9865699_SNP [dm6]	T	C	2.279e^-4	0.694	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
2L	9632931	2L_9632931_SNP [dm3] 2L_9632931_SNP [dm6]	A	T	2.283e^-4	0.694	INTERGENIC
3L	12185769	3L_12185769_SNP [dm3] 3L_12192669_SNP [dm6]	A	T	2.285e^-4	0.694	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
2R	8147573	2R_8147573_SNP [dm3] 2R_12260068_SNP [dm6]	A	C	2.294e^-4	0.694	UTR_5_PRIME Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	20804324	3R_20804324_SNP [dm3] 3R_24978602_SNP [dm6]	G	C	2.295e^-4	0.694	INTERGENIC
2L	18985855	2L_18985855_SNP [dm3] 2L_18985855_SNP [dm6]	C	G	2.306e^-4	0.694	INTRON Swip-1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7816167	X_7816167_SNP [dm3] X_7922134_SNP [dm6]	C	G	2.308e^-4	0.694	DOWNSTREAM CG10777 & 1 other INTERGENIC
2R	8150337	2R_8150337_DEL [dm3] 2R_12262832_DEL [dm6]	TA	C	2.309e^-4	0.694	INTRON Cam
2R	8171228	2R_8171228_DEL [dm3] 2R_12283723_DEL [dm6]	AGAGTCCCATAAAGGAGTAT...	A	2.311e^-4	0.694	INTRON CG42700
3L	7448751	3L_7448751_SNP [dm3] 3L_7455651_SNP [dm6]	A	T	2.312e^-4	0.694	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	2.312e^-4	0.694	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10172748	2R_10172748_SNP [dm3] 2R_14285243_SNP [dm6]	A	G	2.313e^-4	0.694	INTRON Ih
2R	8149542	2R_8149542_SNP [dm3] 2R_12262037_SNP [dm6]	G	T	2.317e^-4	0.694	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	20260076	3R_20260076_SNP [dm3] 3R_24434354_SNP [dm6]	T	C	2.321e^-4	0.694	INTRON nAChRalpha1
3R	25121876	3R_25121876_SNP [dm3] 3R_29296154_SNP [dm6]	G	A	2.322e^-4	0.694	SYNONYMOUS_CODING CG14506
2R	19502356	2R_19502356_SNP [dm3] 2R_23614833_SNP [dm6]	C	T	2.330e^-4	0.694	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	2.336e^-4	0.694	INTERGENIC
2R	9109752	2R_9109752_SNP [dm3] 2R_13222247_SNP [dm6]	C	T	2.336e^-4	0.694	UTR_5_PRIME Fsn UPSTREAM Dp INTRON Fsn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	18983367	2L_18983367_SNP [dm3] 2L_18983367_SNP [dm6]	C	T	2.337e^-4	0.694	INTRON Swip-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14410942	2R_14410942_SNP [dm3] 2R_18523437_SNP [dm6]	C	G	2.339e^-4	0.694	UTR_3_PRIME CG43066 INTRON CG43066
3L	11450266	3L_11450266_SNP [dm3] 3L_11457166_SNP [dm6]	A	G	2.339e^-4	0.694	NON_SYNONYMOUS_CODING CG12289
2R	8171005	2R_8171005_SNP [dm3] 2R_12283500_SNP [dm6]	G	T	2.346e^-4	0.694	INTRON CG42700
3L	18382511	3L_18382511_SNP [dm3] 3L_18389411_SNP [dm6]	C	T	2.346e^-4	0.694	INTERGENIC
2L	12573240	2L_12573240_SNP [dm3] 2L_12573240_SNP [dm6]	G	T	2.347e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20590015	2R_20590015_SNP [dm3] 2R_24702492_SNP [dm6]	C	T	2.347e^-4	0.694	INTRON Mid1
2L	14909853	2L_14909853_SNP [dm3] 2L_14909853_SNP [dm6]	G	A	2.352e^-4	0.695	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6595992	3L_6595992_SNP [dm3] 3L_6602892_SNP [dm6]	T	C	2.356e^-4	0.695	UPSTREAM CG8368 INTRON ndl
2L	7781984	2L_7781984_SNP [dm3] 2L_7781984_SNP [dm6]	T	C	2.367e^-4	0.696	NON_SYNONYMOUS_CODING CG7164 UPSTREAM CG7154 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8173174	2R_8173174_SNP [dm3] 2R_12285669_SNP [dm6]	G	A	2.368e^-4	0.696	UPSTREAM CG42700 INTRON CG42700
3R	21702278	3R_21702278_SNP [dm3] 3R_25876556_SNP [dm6]	A	C	2.372e^-4	0.696	SYNONYMOUS_CODING Tsp96F	TF binding site BDTNP1_TFBS_twi
2L	1645135	2L_1645135_SNP [dm3] 2L_1645135_SNP [dm6]	G	C	2.383e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7834712	2R_7834712_SNP [dm3] 2R_11947207_SNP [dm6]	T	C	2.390e^-4	0.699	INTRON CG13188
3R	13275369	3R_13275369_SNP [dm3] 3R_17449647_SNP [dm6]	G	A	2.393e^-4	0.699	UPSTREAM Eh INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14299706	3R_14299706_SNP [dm3] 3R_18473984_SNP [dm6]	T	G	2.398e^-4	0.699	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1645318	2L_1645318_SNP [dm3] 2L_1645318_SNP [dm6]	T	G	2.400e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9458974	3R_9458974_SNP [dm3] 3R_13633252_SNP [dm6]	C	T	2.406e^-4	0.7	SYNONYMOUS_CODING CG10841
2L	8612492	2L_8612492_SNP [dm3] 2L_8612492_SNP [dm6]	A	C	2.414e^-4	0.701	INTRON Sema-1a
2R	8172504	2R_8172504_SNP [dm3] 2R_12284999_SNP [dm6]	T	A	2.418e^-4	0.701	INTRON CG42700
X	16002074	X_16002074_SNP [dm3] X_16108041_SNP [dm6]	A	G	2.447e^-4	0.708	INTERGENIC
2L	18968555	2L_18968555_SNP [dm3] 2L_18968555_SNP [dm6]	C	T	2.448e^-4	0.708	UTR_5_PRIME Nak UPSTREAM Tango6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21330403	3R_21330403_INS [dm3] 3R_25504681_INS [dm6]	T	TT	2.465e^-4	0.71	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8173184	2R_8173184_SNP [dm3] 2R_12285679_SNP [dm6]	T	C	2.467e^-4	0.71	UPSTREAM CG42700 INTRON CG42700
3R	19206094	3R_19206094_SNP [dm3] 3R_23380372_SNP [dm6]	T	C	2.469e^-4	0.71	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	27138249	3R_27138249_INS [dm3] 3R_31312527_INS [dm6]	A	ACCAGAGC	2.475e^-4	0.711	INTRON CG34347
X	3422598	X_3422598_SNP [dm3] X_3528565_SNP [dm6]	T	A	2.486e^-4	0.713	INTRON CG32791
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	2.504e^-4	0.717	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
2R	1835645	2R_1835645_INS [dm3] 2R_5948140_INS [dm6]	A	AATGCGTCTGTCTGTGGAAT...	2.513e^-4	0.719	INTERGENIC	transposable element FlyBase
3R	26779715	3R_26779715_SNP [dm3] 3R_30953993_SNP [dm6]	T	C	2.521e^-4	0.72	INTERGENIC
2R	8161426	2R_8161426_SNP [dm3] 2R_12273921_SNP [dm6]	C	A	2.525e^-4	0.72	UTR_3_PRIME Cam DOWNSTREAM Cam
X	6282544	X_6282544_SNP [dm3] X_6388511_SNP [dm6]	G	T	2.535e^-4	0.722	INTERGENIC
3R	20316412	3R_20316412_SNP [dm3] 3R_24490690_SNP [dm6]	T	C	2.546e^-4	0.723	INTRON nAChRalpha2
3R	15102359	3R_15102359_SNP [dm3] 3R_19276637_SNP [dm6]	T	A	2.550e^-4	0.723	INTERGENIC
3L	5361645	3L_5361645_SNP [dm3] 3L_5368545_SNP [dm6]	A	T	2.553e^-4	0.723	UPSTREAM CG10635 & 1 other INTERGENIC
X	6381338	X_6381338_SNP [dm3] X_6487305_SNP [dm6]	T	C	2.576e^-4	0.728	INTRON CG42340
2L	2549877	2L_2549877_SNP [dm3] 2L_2549877_SNP [dm6]	C	T	2.581e^-4	0.728	INTERGENIC
3L	810204	3L_810204_SNP [dm3] 3L_810204_SNP [dm6]	C	G	2.583e^-4	0.728	INTERGENIC
X	16001955	X_16001955_INS [dm3] X_16107922_INS [dm6]	A	ACGA	2.585e^-4	0.728	INTERGENIC
3R	14299157	3R_14299157_SNP [dm3] 3R_18473435_SNP [dm6]	A	G	2.589e^-4	0.728	INTRON fru
2R	12969116	2R_12969116_SNP [dm3] 2R_17081611_SNP [dm6]	G	T	2.596e^-4	0.729	UTR_5_PRIME CG30460
2L	20038760	2L_20038760_SNP [dm3] 2L_20038760_SNP [dm6]	G	A	2.603e^-4	0.729	INTRON sNPF
2L	12249062	2L_12249062_SNP [dm3] 2L_12249062_SNP [dm6]	C	T	2.606e^-4	0.729	INTRON aret
2L	5717510	2L_5717510_SNP [dm3] 2L_5717510_SNP [dm6]	G	A	2.620e^-4	0.729	NON_SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
X	17620747	X_17620747_SNP [dm3] X_17726714_SNP [dm6]	T	A	2.624e^-4	0.729	INTRON CG42684
3R	18302844	3R_18302844_SNP [dm3] 3R_22477122_SNP [dm6]	T	C	2.626e^-4	0.729	INTRON Nrx-1
2L	15022297	2L_15022297_SNP [dm3] 2L_15022297_SNP [dm6]	T	A	2.628e^-4	0.729	INTRON GABA-B-R1
X	3415132	X_3415132_SNP [dm3] X_3521099_SNP [dm6]	C	T	2.630e^-4	0.729	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_inv
2L	10352311	2L_10352311_DEL [dm3] 2L_10352311_DEL [dm6]	GG	C	2.638e^-4	0.729	UPSTREAM CG34367 INTRON CG34367
3R	6564637	3R_6564637_SNP [dm3] 3R_10738915_SNP [dm6]	A	C	2.640e^-4	0.729	INTRON TkR86C	TF binding site mE1_TFBS_cad
2L	1503746	2L_1503746_SNP [dm3] 2L_1503746_SNP [dm6]	G	A	2.643e^-4	0.729	UPSTREAM CG7420 EXON CR44064	TF binding site BDTNP1_TFBS_dl
2R	5872759	2R_5872759_SNP [dm3] 2R_9985254_SNP [dm6]	T	C	2.645e^-4	0.729	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	1354290	3L_1354290_SNP [dm3] 3L_1354290_SNP [dm6]	C	G	2.647e^-4	0.729	INTRON Ptp61F
2R	4750026	2R_4750026_SNP [dm3] 2R_8862521_SNP [dm6]	A	G	2.651e^-4	0.729	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6546785	3L_6546785_SNP [dm3] 3L_6553685_SNP [dm6]	G	A	2.651e^-4	0.729	INTRON CG18769
2R	8144991	2R_8144991_SNP [dm3] 2R_12257486_SNP [dm6]	A	G	2.661e^-4	0.73	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	2.662e^-4	0.73	INTERGENIC
2R	17462051	2R_17462051_SNP [dm3] 2R_21574546_SNP [dm6]	A	G	2.665e^-4	0.73	INTRON CG10440
3R	17214350	3R_17214350_SNP [dm3] 3R_21388628_SNP [dm6]	T	A	2.676e^-4	0.732	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	16549891	2L_16549891_SNP [dm3] 2L_16549891_SNP [dm6]	T	A	2.690e^-4	0.734	UTR_5_PRIME CG5968 INTRON CG42389
2L	6887696	2L_6887696_SNP [dm3] 2L_6887696_SNP [dm6]	A	T	2.699e^-4	0.736	INTRON Nlg2
2R	19991269	2R_19991269_SNP [dm3] 2R_24103746_SNP [dm6]	C	A	2.710e^-4	0.736	SYNONYMOUS_CODING enok
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	2.717e^-4	0.736	INTRON sr
3R	13103308	3R_13103308_DEL [dm3] 3R_17277586_DEL [dm6]	TTCCTA	T	2.719e^-4	0.736	INTERGENIC
3L	11255424	3L_11255424_SNP [dm3] 3L_11262324_SNP [dm6]	T	G	2.720e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8176561	2R_8176561_SNP [dm3] 2R_12289056_SNP [dm6]	A	G	2.722e^-4	0.736	INTRON CG42700
3R	23892151	3R_23892151_SNP [dm3] 3R_28066429_SNP [dm6]	C	T	2.724e^-4	0.736	INTRON CG34362
2R	8733466	2R_8733466_SNP [dm3] 2R_12845961_SNP [dm6]	A	G	2.728e^-4	0.736	SYNONYMOUS_CODING CG17575 DOWNSTREAM antr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23885443	3R_23885443_SNP [dm3] 3R_28059721_SNP [dm6]	G	T	2.743e^-4	0.737	INTRON CG34362
X	16001953	X_16001953_SNP [dm3] X_16107920_SNP [dm6]	A	T	2.746e^-4	0.737	INTERGENIC
2R	8364135	2R_8364135_SNP [dm3] 2R_12476630_SNP [dm6]	T	C	2.747e^-4	0.737	INTRON Dh44-R2
2R	17973865	2R_17973865_SNP [dm3] 2R_22086360_SNP [dm6]	A	C	2.748e^-4	0.737	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
X	6408035	X_6408035_SNP [dm3] X_6514002_SNP [dm6]	A	T	2.768e^-4	0.742	INTRON CG42340
2L	14921060	2L_14921060_SNP [dm3] 2L_14921060_SNP [dm6]	A	G	2.773e^-4	0.742	INTRON CG42313
2L	14916955	2L_14916955_SNP [dm3] 2L_14916955_SNP [dm6]	G	C	2.789e^-4	0.744	INTRON CG42313
3L	9526172	3L_9526172_DEL [dm3] 3L_9533072_DEL [dm6]	TTGT	T	2.797e^-4	0.744	INTERGENIC
3L	521477	3L_521477_SNP [dm3] 3L_521477_SNP [dm6]	A	G	2.802e^-4	0.744	INTRON klar
3R	6860422	3R_6860422_SNP [dm3] 3R_11034700_SNP [dm6]	C	T	2.805e^-4	0.744	INTRON CG34114
2R	8113441	2R_8113441_SNP [dm3] 2R_12225936_SNP [dm6]	C	T	2.809e^-4	0.744	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	6545786	3R_6545786_SNP [dm3] 3R_10720064_SNP [dm6]	A	T	2.811e^-4	0.744	INTERGENIC
3L	5648454	3L_5648454_SNP [dm3] 3L_5655354_SNP [dm6]	T	C	2.812e^-4	0.744	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21467245	3R_21467245_SNP [dm3] 3R_25641523_SNP [dm6]	A	G	2.816e^-4	0.744	INTRON jigr1
2R	5028327	2R_5028327_SNP [dm3] 2R_9140822_SNP [dm6]	G	T	2.826e^-4	0.744	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	17203637	2R_17203637_SNP [dm3] 2R_21316132_SNP [dm6]	G	T	2.826e^-4	0.744	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	2.826e^-4	0.744	SYNONYMOUS_CODING pps
3L	20925798	3L_20925798_SNP [dm3] 3L_20932698_SNP [dm6]	A	C	2.835e^-4	0.744	INTRON fng	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9721237	3R_9721237_SNP [dm3] 3R_13895515_SNP [dm6]	T	A	2.840e^-4	0.744	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23901637	3R_23901637_SNP [dm3] 3R_28075915_SNP [dm6]	C	G	2.842e^-4	0.744	INTRON CG34362	TF binding site mE1_TFBS_inv
3R	22631347	3R_22631347_SNP [dm3] 3R_26805625_SNP [dm6]	G	C	2.845e^-4	0.744	DOWNSTREAM snoRNA:Me28S-U1554 INTRON Tl
3L	10801839	3L_10801839_SNP [dm3] 3L_10808739_SNP [dm6]	A	T	2.848e^-4	0.744	INTERGENIC
3L	16541067	3L_16541067_SNP [dm3] 3L_16547967_SNP [dm6]	A	T	2.850e^-4	0.744	INTERGENIC
3R	19206544	3R_19206544_SNP [dm3] 3R_23380822_SNP [dm6]	T	C	2.853e^-4	0.744	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
2L	15793964	2L_15793964_SNP [dm3] 2L_15793964_SNP [dm6]	C	T	2.857e^-4	0.744	INTERGENIC
2L	1645138	2L_1645138_SNP [dm3] 2L_1645138_SNP [dm6]	T	C	2.864e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18985857	2L_18985857_SNP [dm3] 2L_18985857_SNP [dm6]	G	C	2.872e^-4	0.746	INTRON Swip-1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9738725	3R_9738725_SNP [dm3] 3R_13913003_SNP [dm6]	A	G	2.880e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13045210	3R_13045210_SNP [dm3] 3R_17219488_SNP [dm6]	T	A	2.881e^-4	0.746	INTRON CG31262
3R	13307747	3R_13307747_SNP [dm3] 3R_17482025_SNP [dm6]	A	T	2.887e^-4	0.747	DOWNSTREAM Dscam3 INTRON Dscam3
3R	6752135	3R_6752135_SNP [dm3] 3R_10926413_SNP [dm6]	C	A	2.901e^-4	0.75	INTERGENIC
2L	14911090	2L_14911090_SNP [dm3] 2L_14911090_SNP [dm6]	A	G	2.906e^-4	0.75	INTRON CG42313
2R	8178856	2R_8178856_DEL [dm3] 2R_12291351_DEL [dm6]	TC	T	2.928e^-4	0.75	INTRON CG42700
2R	18133444	2R_18133444_SNP [dm3] 2R_22245939_SNP [dm6]	C	A	2.928e^-4	0.75	INTRON dve
3R	8108330	3R_8108330_SNP [dm3] 3R_12282608_SNP [dm6]	C	T	2.931e^-4	0.75	INTRON svp
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	2.931e^-4	0.75	INTERGENIC
2L	17575103	2L_17575103_INS [dm3] 2L_17575103_INS [dm6]	T	AC	2.932e^-4	0.75	DOWNSTREAM CR45358 & 1 other INTERGENIC
3R	6590332	3R_6590332_SNP [dm3] 3R_10764610_SNP [dm6]	C	A	2.941e^-4	0.75	INTRON Cap-H2
3L	19229304	3L_19229304_SNP [dm3] 3L_19236204_SNP [dm6]	T	A	2.951e^-4	0.75	UPSTREAM CG33647 & 1 other INTERGENIC
2R	8140764	2R_8140764_SNP [dm3] 2R_12253259_SNP [dm6]	C	T	2.954e^-4	0.75	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8482403	3R_8482403_SNP [dm3] 3R_12656681_SNP [dm6]	A	G	2.958e^-4	0.75	UTR_5_PRIME CG6225
3R	27141810	3R_27141810_SNP [dm3] 3R_31316088_SNP [dm6]	G	A	2.963e^-4	0.75	INTRON CG34347
3L	7011406	3L_7011406_DEL [dm3] 3L_7018306_DEL [dm6]	TCCTGTACGTTTAAGAGTAT...	T	2.963e^-4	0.75	INTRON Mp	insulator Insulator_Class_II.mE01
3L	810706	3L_810706_SNP [dm3] 3L_810706_SNP [dm6]	C	A	2.965e^-4	0.75	INTERGENIC
2L	856769	2L_856769_SNP [dm3] 2L_856769_SNP [dm6]	A	G	2.966e^-4	0.75	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9410595	3L_9410595_SNP [dm3] 3L_9417495_SNP [dm6]	A	T	2.966e^-4	0.75	UPSTREAM CG3982 INTRON CG3967
2R	8137554	2R_8137554_SNP [dm3] 2R_12250049_SNP [dm6]	G	A	2.967e^-4	0.75	INTERGENIC
3R	13103287	3R_13103287_SNP [dm3] 3R_17277565_SNP [dm6]	C	T	2.987e^-4	0.752	INTERGENIC
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	2.993e^-4	0.752	INTERGENIC
3R	8120616	3R_8120616_SNP [dm3] 3R_12294894_SNP [dm6]	C	T	2.995e^-4	0.752	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8118655	2R_8118655_SNP [dm3] 2R_12231150_SNP [dm6]	T	C	3.002e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18687881	3L_18687881_SNP [dm3] 3L_18694781_SNP [dm6]	A	T	3.007e^-4	0.752	SYNONYMOUS_CODING CG6893 UPSTREAM CR43987
3R	23902367	3R_23902367_SNP [dm3] 3R_28076645_SNP [dm6]	G	A	3.010e^-4	0.752	INTRON CG34362
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	3.010e^-4	0.752	INTRON dpr6
2L	7080281	2L_7080281_SNP [dm3] 2L_7080281_SNP [dm6]	G	C	3.018e^-4	0.752	UPSTREAM CR44611 INTRON Pvf2
3R	26608321	3R_26608321_SNP [dm3] 3R_30782599_SNP [dm6]	A	T	3.028e^-4	0.752	UPSTREAM zfh1 INTRON zfh1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4612264	2L_4612264_SNP [dm3] 2L_4612264_SNP [dm6]	T	C	3.034e^-4	0.752	INTRON dp	TF binding site mE1_TFBS_kn
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	3.045e^-4	0.752	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2R	5028235	2R_5028235_SNP [dm3] 2R_9140730_SNP [dm6]	A	T	3.046e^-4	0.752	START_GAINED CG44286 UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3L	11450270	3L_11450270_SNP [dm3] 3L_11457170_SNP [dm6]	G	C	3.047e^-4	0.752	NON_SYNONYMOUS_CODING CG12289
2R	8129532	2R_8129532_SNP [dm3] 2R_12242027_SNP [dm6]	G	A	3.049e^-4	0.752	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8174356	2R_8174356_SNP [dm3] 2R_12286851_SNP [dm6]	T	C	3.049e^-4	0.752	INTRON CG42700
2R	10026121	2R_10026121_SNP [dm3] 2R_14138616_SNP [dm6]	C	G	3.050e^-4	0.752	INTRON Prosap	TF binding site mE1_TFBS_cad
3R	24702567	3R_24702567_SNP [dm3] 3R_28876845_SNP [dm6]	C	T	3.060e^-4	0.752	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15461848	2L_15461848_SNP [dm3] 2L_15461848_SNP [dm6]	A	G	3.070e^-4	0.752	INTERGENIC
X	8839960	X_8839960_SNP [dm3] X_8945927_SNP [dm6]	T	C	3.077e^-4	0.752	INTRON rdgA
2R	8135142	2R_8135142_SNP [dm3] 2R_12247637_SNP [dm6]	A	G	3.078e^-4	0.752	UPSTREAM CR44315 INTERGENIC
3R	22581841	3R_22581841_SNP [dm3] 3R_26756119_SNP [dm6]	T	A	3.092e^-4	0.752	DOWNSTREAM CR45562 INTERGENIC
X	14807145	X_14807145_SNP [dm3] X_14913112_SNP [dm6]	T	C	3.094e^-4	0.752	SYNONYMOUS_CODING CG12398 INTRON Flo2	TF binding site mE1_TFBS_sens
2L	2016801	2L_2016801_SNP [dm3] 2L_2016801_SNP [dm6]	T	C	3.096e^-4	0.752	UPSTREAM CG4238 INTRON CG4238
3R	10504675	3R_10504675_SNP [dm3] 3R_14678953_SNP [dm6]	C	G	3.101e^-4	0.752	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5622031	2L_5622031_SNP [dm3] 2L_5622031_SNP [dm6]	C	T	3.104e^-4	0.752	NON_SYNONYMOUS_CODING Cyp6a16
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	3.110e^-4	0.752	INTRON beat-Vc
2R	8150110	2R_8150110_SNP [dm3] 2R_12262605_SNP [dm6]	C	T	3.111e^-4	0.752	INTRON Cam	TF binding site BDTNP1_TFBS_dl
3L	14109599	3L_14109599_SNP [dm3] 3L_14116499_SNP [dm6]	A	G	3.111e^-4	0.752	INTRON Sox21b
2L	9532134	2L_9532134_SNP [dm3] 2L_9532134_SNP [dm6]	T	A	3.111e^-4	0.752	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3R	23208507	3R_23208507_SNP [dm3] 3R_27382785_SNP [dm6]	G	A	3.113e^-4	0.752	INTRON side	TF binding site mE1_TFBS_chinmo
2R	8145855	2R_8145855_SNP [dm3] 2R_12258350_SNP [dm6]	C	T	3.113e^-4	0.752	SYNONYMOUS_CODING Vha36-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8169897	2R_8169897_SNP [dm3] 2R_12282392_SNP [dm6]	C	T	3.114e^-4	0.752	INTRON CG42700
3L	11299436	3L_11299436_INS [dm3] 3L_11306336_INS [dm6]	A	AT	3.115e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.120e^-4	0.752	INTERGENIC
3R	25021760	3R_25021760_SNP [dm3] 3R_29196038_SNP [dm6]	G	T	3.122e^-4	0.752	INTERGENIC
2R	8174487	2R_8174487_SNP [dm3] 2R_12286982_SNP [dm6]	G	C	3.128e^-4	0.752	INTRON CG42700
3L	8241170	3L_8241170_INS [dm3] 3L_8248070_INS [dm6]	A	AAT	3.131e^-4	0.752	INTRON Dscam4
2R	19242268	2R_19242268_SNP [dm3] 2R_23354745_SNP [dm6]	T	G	3.142e^-4	0.752	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19336868	3L_19336868_SNP [dm3] 3L_19343768_SNP [dm6]	A	C	3.146e^-4	0.752	INTRON CG32206
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	3.150e^-4	0.752	INTRON salm
3L	9594608	3L_9594608_DEL [dm3] 3L_9601508_DEL [dm6]	ATTATTTGA	A	3.152e^-4	0.752	UPSTREAM CG3306 & 1 other INTERGENIC
3R	25079293	3R_25079293_SNP [dm3] 3R_29253571_SNP [dm6]	T	C	3.153e^-4	0.752	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26566963	3R_26566963_SNP [dm3] 3R_30741241_SNP [dm6]	G	T	3.155e^-4	0.752	INTERGENIC
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	3.166e^-4	0.752	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25144627	3R_25144627_SNP [dm3] 3R_29318905_SNP [dm6]	T	C	3.171e^-4	0.752	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23901645	3R_23901645_SNP [dm3] 3R_28075923_SNP [dm6]	A	C	3.175e^-4	0.752	INTRON CG34362	TF binding site mE1_TFBS_inv
3R	9862746	3R_9862746_SNP [dm3] 3R_14037024_SNP [dm6]	G	A	3.180e^-4	0.752	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10956956	2L_10956956_SNP [dm3] 2L_10956956_SNP [dm6]	C	A	3.180e^-4	0.752	INTRON dpr2
2L	17575105	2L_17575105_SNP [dm3] 2L_17575105_SNP [dm6]	C	A	3.185e^-4	0.752	DOWNSTREAM CR45358 & 1 other INTERGENIC
2R	8176555	2R_8176555_SNP [dm3] 2R_12289050_SNP [dm6]	A	C	3.186e^-4	0.752	INTRON CG42700
3L	5361485	3L_5361485_SNP [dm3] 3L_5368385_SNP [dm6]	A	C	3.192e^-4	0.752	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8503268	3R_8503268_SNP [dm3] 3R_12677546_SNP [dm6]	G	T	3.193e^-4	0.752	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5073331	3L_5073331_SNP [dm3] 3L_5073331_SNP [dm6]	G	A	3.193e^-4	0.752	INTRON Con
2R	3344532	2R_3344532_SNP [dm3] 2R_7457027_SNP [dm6]	A	G	3.193e^-4	0.752	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5362371	3L_5362371_SNP [dm3] 3L_5369271_SNP [dm6]	A	T	3.198e^-4	0.752	UPSTREAM CR44515 INTERGENIC
3L	5362376	3L_5362376_SNP [dm3] 3L_5369276_SNP [dm6]	C	T	3.198e^-4	0.752	UPSTREAM CR44515 INTERGENIC
3L	14109818	3L_14109818_SNP [dm3] 3L_14116718_SNP [dm6]	C	A	3.202e^-4	0.752	INTRON Sox21b
3R	17214225	3R_17214225_SNP [dm3] 3R_21388503_SNP [dm6]	A	G	3.210e^-4	0.752	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	15168958	2R_15168958_SNP [dm3] 2R_19281453_SNP [dm6]	C	A	3.211e^-4	0.752	UTR_3_PRIME CG11906 DOWNSTREAM rib
2L	18962004	2L_18962004_DEL [dm3] 2L_18962004_DEL [dm6]	GTAC	G	3.218e^-4	0.752	UTR_3_PRIME Nak INTRON Nak
2L	16367012	2L_16367012_SNP [dm3] 2L_16367012_SNP [dm6]	G	T	3.229e^-4	0.753	UTR_3_PRIME jhamt DOWNSTREAM jhamt
2L	11306032	2L_11306032_DEL [dm3] 2L_11306032_DEL [dm6]	ATGGGCCACAAGC...	A	3.232e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17685402	3L_17685402_SNP [dm3] 3L_17692302_SNP [dm6]	A	T	3.235e^-4	0.753	INTRON Ccn
3L	4110035	3L_4110035_SNP [dm3] 3L_4110035_SNP [dm6]	G	A	3.238e^-4	0.753	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	4716715	2R_4716715_INS [dm3] 2R_8829210_INS [dm6]	G	GAG	3.239e^-4	0.753	INTRON sns	TF binding site mE1_TFBS_chinmo
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	3.245e^-4	0.753	INTRON ssh	TF binding site mE1_TFBS_chinmo
2R	5031449	2R_5031449_DEL [dm3] 2R_9143944_DEL [dm6]	GCTTGGCG	G	3.249e^-4	0.753	UPSTREAM Prp38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	6577663	3R_6577663_SNP [dm3] 3R_10751941_SNP [dm6]	C	T	3.250e^-4	0.753	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
2L	7531268	2L_7531268_SNP [dm3] 2L_7531268_SNP [dm6]	A	T	3.255e^-4	0.753	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9583786	2R_9583786_SNP [dm3] 2R_13696281_SNP [dm6]	A	G	3.286e^-4	0.759	INTRON fas
3R	14361056	3R_14361056_SNP [dm3] 3R_18535334_SNP [dm6]	G	A	3.304e^-4	0.762	INTRON fru
2R	9966195	2R_9966195_SNP [dm3] 2R_14078690_SNP [dm6]	A	C	3.319e^-4	0.765	INTRON Prosap
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	3.322e^-4	0.765	INTRON Actn	TF binding site BDTNP1_TFBS_dl
2L	15442267	2L_15442267_SNP [dm3] 2L_15442267_SNP [dm6]	A	C	3.355e^-4	0.771	EXON CR44862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8175891	2R_8175891_SNP [dm3] 2R_12288386_SNP [dm6]	A	G	3.360e^-4	0.771	INTRON CG42700
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	3.366e^-4	0.771	INTERGENIC
2R	10951246	2R_10951246_SNP [dm3] 2R_15063741_SNP [dm6]	C	T	3.369e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	8113500	2R_8113500_SNP [dm3] 2R_12225995_SNP [dm6]	T	C	3.370e^-4	0.771	NON_SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	17415114	2L_17415114_SNP [dm3] 2L_17415114_SNP [dm6]	T	A	3.381e^-4	0.772	UTR_3_PRIME Dif INTRON Dif
3R	16899416	3R_16899416_SNP [dm3] 3R_21073694_SNP [dm6]	C	A	3.388e^-4	0.773	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	3.398e^-4	0.773	INTERGENIC
X	17620737	X_17620737_SNP [dm3] X_17726704_SNP [dm6]	G	C	3.398e^-4	0.773	INTRON CG42684
X	5482435	X_5482435_SNP [dm3] X_5588402_SNP [dm6]	C	T	3.402e^-4	0.773	INTERGENIC
3R	20703453	3R_20703453_SNP [dm3] 3R_24877731_SNP [dm6]	A	C	3.405e^-4	0.773	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9971914	2R_9971914_INS [dm3] 2R_14084409_INS [dm6]	A	ATAATAATA	3.408e^-4	0.773	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	1030410	2L_1030410_SNP [dm3] 2L_1030410_SNP [dm6]	C	T	3.417e^-4	0.774	INTRON IA-2
X	9472649	X_9472649_SNP [dm3] X_9578616_SNP [dm6]	G	C	3.429e^-4	0.776	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	3.432e^-4	0.776	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7389360	3L_7389360_SNP [dm3] 3L_7396260_SNP [dm6]	G	A	3.442e^-4	0.776	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13243912	2R_13243912_SNP [dm3] 2R_17356407_SNP [dm6]	G	A	3.450e^-4	0.776	INTRON mbl
3L	2393649	3L_2393649_SNP [dm3] 3L_2393649_SNP [dm6]	G	C	3.454e^-4	0.776	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26151744	3R_26151744_SNP [dm3] 3R_30326022_SNP [dm6]	A	T	3.457e^-4	0.776	INTRON hdc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15171972	2R_15171972_SNP [dm3] 2R_19284467_SNP [dm6]	T	A	3.459e^-4	0.776	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9971375	2R_9971375_SNP [dm3] 2R_14083870_SNP [dm6]	G	A	3.463e^-4	0.776	INTRON Prosap
3R	11032467	3R_11032467_SNP [dm3] 3R_15206745_SNP [dm6]	C	A	3.464e^-4	0.776	UTR_3_PRIME Spn88Eb UPSTREAM Spn88Ea	TF binding site mE1_TFBS_inv
3L	6570836	3L_6570836_SNP [dm3] 3L_6577736_SNP [dm6]	C	T	3.486e^-4	0.779	INTRON CG18769 & 1 other
3R	2987249	3R_2987249_SNP [dm3] 3R_7161527_SNP [dm6]	G	A	3.492e^-4	0.779	INTERGENIC
3R	9218347	3R_9218347_INS [dm3] 3R_13392625_INS [dm6]	A	AGA	3.496e^-4	0.779	INTRON CCHa2
3R	22054172	3R_22054172_SNP [dm3] 3R_26228450_SNP [dm6]	G	A	3.499e^-4	0.779	INTERGENIC
2R	8149837	2R_8149837_SNP [dm3] 2R_12262332_SNP [dm6]	C	T	3.502e^-4	0.779	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
2R	10173102	2R_10173102_SNP [dm3] 2R_14285597_SNP [dm6]	T	G	3.503e^-4	0.779	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24602710	3R_24602710_SNP [dm3] 3R_28776988_SNP [dm6]	T	C	3.514e^-4	0.779	UPSTREAM CR44952 INTERGENIC
X	8508217	X_8508217_SNP [dm3] X_8614184_SNP [dm6]	A	G	3.515e^-4	0.779	INTERGENIC
2L	2340968	2L_2340968_SNP [dm3] 2L_2340968_SNP [dm6]	A	C	3.518e^-4	0.779	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5827053	X_5827053_DEL [dm3] X_5933020_DEL [dm6]	AACAAAAA	A	3.519e^-4	0.779	INTRON CG3726
X	16001950	X_16001950_SNP [dm3] X_16107917_SNP [dm6]	G	A	3.521e^-4	0.779	INTERGENIC
2L	14915314	2L_14915314_SNP [dm3] 2L_14915314_SNP [dm6]	C	T	3.533e^-4	0.78	INTRON CG42313
2R	8154463	2R_8154463_SNP [dm3] 2R_12266958_SNP [dm6]	T	G	3.534e^-4	0.78	INTRON Cam
3L	9856837	3L_9856837_SNP [dm3] 3L_9863737_SNP [dm6]	G	A	3.555e^-4	0.781	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9552632	3L_9552632_SNP [dm3] 3L_9559532_SNP [dm6]	T	C	3.562e^-4	0.781	INTRON CG42673
3R	25202427	3R_25202427_SNP [dm3] 3R_29376705_SNP [dm6]	G	A	3.564e^-4	0.781	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16854539	3R_16854539_SNP [dm3] 3R_21028817_SNP [dm6]	A	G	3.573e^-4	0.781	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
X	19341618	X_19341618_INS [dm3] X_19447585_INS [dm6]	T	TA	3.576e^-4	0.781	INTRON kek5
2R	15171790	2R_15171790_SNP [dm3] 2R_19284285_SNP [dm6]	G	A	3.577e^-4	0.781	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	14956560	2L_14956560_SNP [dm3] 2L_14956560_SNP [dm6]	T	C	3.578e^-4	0.781	INTRON CG42313
3L	16030125	3L_16030125_SNP [dm3] 3L_16037025_SNP [dm6]	T	A	3.579e^-4	0.781	NON_SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	24630145	3R_24630145_SNP [dm3] 3R_28804423_SNP [dm6]	T	A	3.583e^-4	0.781	INTERGENIC
2R	10950778	2R_10950778_SNP [dm3] 2R_15063273_SNP [dm6]	G	C	3.593e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	16562498	2L_16562498_SNP [dm3] 2L_16562498_SNP [dm6]	C	T	3.596e^-4	0.781	INTRON CG42389
3R	8233374	3R_8233374_SNP [dm3] 3R_12407652_SNP [dm6]	C	G	3.603e^-4	0.781	NON_SYNONYMOUS_CODING CG5167 UPSTREAM CG5196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18955125	2L_18955125_SNP [dm3] 2L_18955125_SNP [dm6]	A	T	3.606e^-4	0.781	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	9778399	2L_9778399_INS [dm3] 2L_9778399_INS [dm6]	A	ACATA	3.609e^-4	0.781	INTERGENIC
2R	8118660	2R_8118660_DEL [dm3] 2R_12231155_DEL [dm6]	CCATAGAGC	C	3.616e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14114160	3L_14114160_SNP [dm3] 3L_14121060_SNP [dm6]	T	C	3.620e^-4	0.781	INTRON Sox21b
3R	23161933	3R_23161933_SNP [dm3] 3R_27336211_SNP [dm6]	T	A	3.621e^-4	0.781	INTERGENIC
2R	8145421	2R_8145421_SNP [dm3] 2R_12257916_SNP [dm6]	A	G	3.627e^-4	0.781	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3R	27398046	3R_27398046_SNP [dm3] 3R_31572324_SNP [dm6]	C	G	3.638e^-4	0.781	UTR_5_PRIME gammaCOP INTRON gammaCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	14195262	3R_14195262_SNP [dm3] 3R_18369540_SNP [dm6]	C	T	3.638e^-4	0.781	SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13045164	3R_13045164_SNP [dm3] 3R_17219442_SNP [dm6]	A	C	3.647e^-4	0.781	UTR_5_PRIME CG31262
3L	15644060	3L_15644060_SNP [dm3] 3L_15650960_SNP [dm6]	T	C	3.648e^-4	0.781	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
2R	8117941	2R_8117941_SNP [dm3] 2R_12230436_SNP [dm6]	A	C	3.652e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13636758	3L_13636758_DEL [dm3] 3L_13643658_DEL [dm6]	AA	A	3.655e^-4	0.781	INTRON bru-3
X	12514387	X_12514387_SNP [dm3] X_12620354_SNP [dm6]	T	A	3.657e^-4	0.781	INTRON CG11085	TF binding site BDTNP1_TFBS_sna
X	7759045	X_7759045_SNP [dm3] X_7865012_SNP [dm6]	C	T	3.667e^-4	0.781	NON_SYNONYMOUS_CODING Ir7b
3L	7287923	3L_7287923_SNP [dm3] 3L_7294823_SNP [dm6]	G	T	3.671e^-4	0.781	UTR_5_PRIME unc-13-4A
2L	11947689	2L_11947689_DEL [dm3] 2L_11947689_DEL [dm6]	AGC	A	3.674e^-4	0.781	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2L	14914757	2L_14914757_SNP [dm3] 2L_14914757_SNP [dm6]	C	G	3.675e^-4	0.781	INTRON CG42313
2L	14978766	2L_14978766_SNP [dm3] 2L_14978766_SNP [dm6]	A	T	3.694e^-4	0.781	INTRON mol
X	7778899	X_7778899_SNP [dm3] X_7884866_SNP [dm6]	C	G	3.697e^-4	0.781	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3R	26914130	3R_26914130_SNP [dm3] 3R_31088408_SNP [dm6]	A	C	3.708e^-4	0.781	INTERGENIC
2R	11214183	2R_11214183_SNP [dm3] 2R_15326678_SNP [dm6]	C	A	3.710e^-4	0.781	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
2R	2103360	2R_2103360_SNP [dm3] 2R_6215855_SNP [dm6]	T	A	3.711e^-4	0.781	DOWNSTREAM CR44161 INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8164489	2R_8164489_SNP [dm3] 2R_12276984_SNP [dm6]	C	T	3.717e^-4	0.781	UTR_3_PRIME Cam DOWNSTREAM Cam
2L	4612362	2L_4612362_SNP [dm3] 2L_4612362_SNP [dm6]	G	A	3.722e^-4	0.781	UTR_5_PRIME dp	TF binding site mE1_TFBS_kn
X	8019337	X_8019337_SNP [dm3] X_8125304_SNP [dm6]	T	C	3.731e^-4	0.781	INTRON cyr	TF binding site BDTNP1_TFBS_dl
3L	8652977	3L_8652977_SNP [dm3] 3L_8659877_SNP [dm6]	T	A	3.731e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	3.732e^-4	0.781	INTRON salm
3R	13924945	3R_13924945_SNP [dm3] 3R_18099223_SNP [dm6]	C	T	3.741e^-4	0.781	INTRON sr
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	3.742e^-4	0.781	INTERGENIC
3R	6537736	3R_6537736_SNP [dm3] 3R_10712014_SNP [dm6]	G	A	3.748e^-4	0.781	UPSTREAM CG14689 INTERGENIC
3L	4172755	3L_4172755_SNP [dm3] 3L_4172755_SNP [dm6]	G	A	3.763e^-4	0.781	SYNONYMOUS_CODING Ero1L
3L	10177305	3L_10177305_SNP [dm3] 3L_10184205_SNP [dm6]	A	G	3.767e^-4	0.781	INTRON dpr10
3L	8047638	3L_8047638_SNP [dm3] 3L_8054538_SNP [dm6]	C	G	3.779e^-4	0.781	UTR_3_PRIME bip1 DOWNSTREAM nmo
3L	5362400	3L_5362400_SNP [dm3] 3L_5369300_SNP [dm6]	C	T	3.783e^-4	0.781	UPSTREAM CR44515 INTERGENIC
X	16810998	X_16810998_SNP [dm3] X_16916965_SNP [dm6]	G	A	3.787e^-4	0.781	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14361245	3R_14361245_SNP [dm3] 3R_18535523_SNP [dm6]	A	T	3.792e^-4	0.781	INTRON fru
3L	12891988	3L_12891988_DEL [dm3] 3L_12898888_DEL [dm6]	TC	T	3.793e^-4	0.781	INTERGENIC
2L	3880755	2L_3880755_SNP [dm3] 2L_3880755_SNP [dm6]	C	G	3.798e^-4	0.781	UPSTREAM capu INTRON capu
X	4864790	X_4864790_SNP [dm3] X_4970757_SNP [dm6]	G	A	3.802e^-4	0.781	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	8121885	2R_8121885_SNP [dm3] 2R_12234380_SNP [dm6]	G	A	3.804e^-4	0.781	EXON CR44313
3R	10735981	3R_10735981_SNP [dm3] 3R_14910259_SNP [dm6]	C	T	3.806e^-4	0.781	INTERGENIC
3L	6546862	3L_6546862_SNP [dm3] 3L_6553762_SNP [dm6]	C	T	3.810e^-4	0.781	INTRON CG18769
X	16001952	X_16001952_SNP [dm3] X_16107919_SNP [dm6]	A	T	3.815e^-4	0.781	INTERGENIC
3L	6333282	3L_6333282_SNP [dm3] 3L_6340182_SNP [dm6]	C	A	3.822e^-4	0.781	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2R	6970468	2R_6970468_SNP [dm3] 2R_11082963_SNP [dm6]	C	T	3.823e^-4	0.781	INTRON luna
3L	5899445	3L_5899445_SNP [dm3] 3L_5906345_SNP [dm6]	T	C	3.828e^-4	0.781	SYNONYMOUS_CODING CG10486
3R	21611761	3R_21611761_SNP [dm3] 3R_25786039_SNP [dm6]	A	C	3.834e^-4	0.781	DOWNSTREAM CG4960 INTERGENIC
3R	10504662	3R_10504662_SNP [dm3] 3R_14678940_SNP [dm6]	G	A	3.849e^-4	0.781	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	3.849e^-4	0.781	UTR_3_PRIME CG34351
3L	18606031	3L_18606031_SNP [dm3] 3L_18612931_SNP [dm6]	G	A	3.852e^-4	0.781	SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
2R	8145258	2R_8145258_SNP [dm3] 2R_12257753_SNP [dm6]	A	G	3.862e^-4	0.781	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
X	21311812	X_21311812_SNP [dm3] X_21440785_SNP [dm6]	G	A	3.872e^-4	0.781	UTR_3_PRIME CG42343 INTRON CG42343
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	3.880e^-4	0.781	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16726435	3R_16726435_INS [dm3] 3R_20900713_INS [dm6]	A	AG	3.882e^-4	0.781	INTERGENIC
2R	8196402	2R_8196402_SNP [dm3] 2R_12308897_SNP [dm6]	A	C	3.883e^-4	0.781	INTRON CG17739	TF binding site mE1_TFBS_chinmo
2R	19236942	2R_19236942_SNP [dm3] 2R_23349419_SNP [dm6]	G	C	3.887e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7377742	2R_7377742_SNP [dm3] 2R_11490237_SNP [dm6]	G	A	3.888e^-4	0.781	INTRON inv
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	3.893e^-4	0.781	INTERGENIC
2R	11511131	2R_11511131_SNP [dm3] 2R_15623626_SNP [dm6]	C	A	3.898e^-4	0.781	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	9195663	3L_9195663_SNP [dm3] 3L_9202563_SNP [dm6]	A	T	3.905e^-4	0.781	DOWNSTREAM Slc45-1 INTERGENIC
2R	8148122	2R_8148122_SNP [dm3] 2R_12260617_SNP [dm6]	C	A	3.907e^-4	0.781	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8174465	2R_8174465_SNP [dm3] 2R_12286960_SNP [dm6]	G	T	3.907e^-4	0.781	INTRON CG42700
2R	20294312	2R_20294312_SNP [dm3] 2R_24406789_SNP [dm6]	G	A	3.924e^-4	0.781	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
2L	14918417	2L_14918417_SNP [dm3] 2L_14918417_SNP [dm6]	A	G	3.924e^-4	0.781	INTRON CG42313
X	8201755	X_8201755_SNP [dm3] X_8307722_SNP [dm6]	C	A	3.925e^-4	0.781	INTRON nAChRalpha3
3R	17835412	3R_17835412_SNP [dm3] 3R_22009690_SNP [dm6]	A	C	3.935e^-4	0.781	UTR_3_PRIME Eip93F
2R	7020999	2R_7020999_SNP [dm3] 2R_11133494_SNP [dm6]	C	T	3.936e^-4	0.781	INTERGENIC
2R	9182915	2R_9182915_SNP [dm3] 2R_13295410_SNP [dm6]	C	T	3.937e^-4	0.781	UTR_5_PRIME Dh31-R
2R	5312532	2R_5312532_SNP [dm3] 2R_9425027_SNP [dm6]	T	C	3.938e^-4	0.781	INTRON prel
2R	3860712	2R_3860712_SNP [dm3] 2R_7973207_SNP [dm6]	C	A	3.949e^-4	0.781	DOWNSTREAM ACC INTRON CSN4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16196041	2L_16196041_SNP [dm3] 2L_16196041_SNP [dm6]	G	T	3.952e^-4	0.781	UPSTREAM CR44734 EXON CR44735	TF binding site mE1_TFBS_HSA
2R	8179622	2R_8179622_SNP [dm3] 2R_12292117_SNP [dm6]	T	C	3.954e^-4	0.781	INTRON CG42700
X	7759022	X_7759022_SNP [dm3] X_7864989_SNP [dm6]	T	G	3.954e^-4	0.781	NON_SYNONYMOUS_CODING Ir7b
2R	14278559	2R_14278559_SNP [dm3] 2R_18391054_SNP [dm6]	T	G	3.955e^-4	0.781	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	3.959e^-4	0.781	INTERGENIC
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	3.959e^-4	0.781	INTRON ush	regulatory region REDfly_CRMs
2R	8158024	2R_8158024_SNP [dm3] 2R_12270519_SNP [dm6]	C	G	3.966e^-4	0.781	INTRON Cam	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8092781	2R_8092781_SNP [dm3] 2R_12205276_SNP [dm6]	C	T	3.966e^-4	0.781	UPSTREAM CR45276 INTERGENIC
3R	13045213	3R_13045213_SNP [dm3] 3R_17219491_SNP [dm6]	A	T	3.968e^-4	0.781	INTRON CG31262
2L	19240506	2L_19240506_SNP [dm3] 2L_19240506_SNP [dm6]	A	C	3.971e^-4	0.781	INTERGENIC
3L	4172422	3L_4172422_SNP [dm3] 3L_4172422_SNP [dm6]	C	T	3.978e^-4	0.781	SYNONYMOUS_CODING Ero1L	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19626446	2R_19626446_SNP [dm3] 2R_23738923_SNP [dm6]	G	T	3.980e^-4	0.781	INTRON egl
2R	7475136	2R_7475136_SNP [dm3] 2R_11587631_SNP [dm6]	T	G	3.980e^-4	0.781	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	3.981e^-4	0.781	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	3.981e^-4	0.781	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4396745	2R_4396745_SNP [dm3] 2R_8509240_SNP [dm6]	C	T	3.982e^-4	0.781	INTRON mtt
3R	24819549	3R_24819549_SNP [dm3] 3R_28993827_SNP [dm6]	G	A	3.982e^-4	0.781	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6053848	2R_6053848_SNP [dm3] 2R_10166343_SNP [dm6]	C	T	3.987e^-4	0.781	INTRON KCNQ
2R	5020072	2R_5020072_SNP [dm3] 2R_9132567_SNP [dm6]	G	T	3.991e^-4	0.781	START_GAINED Hydr1 UTR_5_PRIME Hydr1 UPSTREAM CG18659 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
X	14065943	X_14065943_SNP [dm3] X_14171910_SNP [dm6]	G	A	3.993e^-4	0.781	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
2L	5580229	2L_5580229_SNP [dm3] 2L_5580229_SNP [dm6]	A	G	3.995e^-4	0.781	SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11117621	3L_11117621_SNP [dm3] 3L_11124521_SNP [dm6]	T	C	3.997e^-4	0.781	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5394637	3L_5394637_SNP [dm3] 3L_5401537_SNP [dm6]	C	T	4.006e^-4	0.781	INTERGENIC
2R	3845586	2R_3845586_SNP [dm3] 2R_7958081_SNP [dm6]	G	C	4.008e^-4	0.781	NON_SYNONYMOUS_CODING CG2906 DOWNSTREAM CG2915	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	4.013e^-4	0.781	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20034226	2L_20034226_SNP [dm3] 2L_20034226_SNP [dm6]	T	G	4.013e^-4	0.781	INTRON sNPF
3L	12666787	3L_12666787_DEL [dm3] 3L_12673687_DEL [dm6]	CA	C	4.016e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10736160	3R_10736160_SNP [dm3] 3R_14910438_SNP [dm6]	A	G	4.023e^-4	0.781	INTERGENIC
2R	8174368	2R_8174368_SNP [dm3] 2R_12286863_SNP [dm6]	C	A	4.023e^-4	0.781	INTRON CG42700
2L	20033971	2L_20033971_SNP [dm3] 2L_20033971_SNP [dm6]	G	A	4.030e^-4	0.781	INTRON sNPF
2L	20034823	2L_20034823_SNP [dm3] 2L_20034823_SNP [dm6]	C	G	4.030e^-4	0.781	INTRON sNPF
2L	20038743	2L_20038743_SNP [dm3] 2L_20038743_SNP [dm6]	T	A	4.030e^-4	0.781	INTRON sNPF
2L	20041009	2L_20041009_SNP [dm3] 2L_20041009_SNP [dm6]	T	C	4.030e^-4	0.781	INTRON sNPF
2L	20041346	2L_20041346_SNP [dm3] 2L_20041346_SNP [dm6]	G	A	4.030e^-4	0.781	INTRON sNPF
3L	7736471	3L_7736471_SNP [dm3] 3L_7743371_SNP [dm6]	A	G	4.036e^-4	0.781	UPSTREAM Snmp2 INTRON CG32373
2L	14906551	2L_14906551_SNP [dm3] 2L_14906551_SNP [dm6]	A	G	4.039e^-4	0.781	DOWNSTREAM CG42313 INTERGENIC
3L	11450245	3L_11450245_SNP [dm3] 3L_11457145_SNP [dm6]	T	C	4.046e^-4	0.781	UTR_3_PRIME CG12289
2R	7039119	2R_7039119_SNP [dm3] 2R_11151614_SNP [dm6]	T	A	4.047e^-4	0.781	INTRON CG13229
2R	11214994	2R_11214994_INS [dm3] 2R_15327489_INS [dm6]	T	TCATT	4.050e^-4	0.781	UTR_3_PRIME CG8160
3L	16885451	3L_16885451_SNP [dm3] 3L_16892351_SNP [dm6]	C	T	4.053e^-4	0.781	INTRON Lmpt
3L	16930815	3L_16930815_SNP [dm3] 3L_16937715_SNP [dm6]	G	A	4.066e^-4	0.781	DOWNSTREAM CG13022 INTERGENIC
3R	19907089	3R_19907089_SNP [dm3] 3R_24081367_SNP [dm6]	C	T	4.068e^-4	0.781	INTRON 4EHP
2R	8306402	2R_8306402_SNP [dm3] 2R_12418897_SNP [dm6]	A	G	4.072e^-4	0.781	DOWNSTREAM CG42782 & 2 others INTERGENIC
2R	10025923	2R_10025923_SNP [dm3] 2R_14138418_SNP [dm6]	G	A	4.075e^-4	0.781	INTRON Prosap
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	4.078e^-4	0.781	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9633297	3L_9633297_SNP [dm3] 3L_9640197_SNP [dm6]	C	T	4.081e^-4	0.781	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_HSA
3R	6566309	3R_6566309_SNP [dm3] 3R_10740587_SNP [dm6]	G	A	4.084e^-4	0.781	INTRON TkR86C
3L	7230907	3L_7230907_SNP [dm3] 3L_7237807_SNP [dm6]	C	A	4.086e^-4	0.781	NON_SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	4.087e^-4	0.781	INTERGENIC
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	4.088e^-4	0.781	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10758287	3R_10758287_INS [dm3] 3R_14932565_INS [dm6]	T	TGCTA	4.101e^-4	0.782	INTERGENIC
2R	14973351	2R_14973351_INS [dm3] 2R_19085846_INS [dm6]	T	TCT	4.106e^-4	0.782	INTRON 5-HT1A
3R	17698949	3R_17698949_SNP [dm3] 3R_21873227_SNP [dm6]	C	T	4.110e^-4	0.782	SYNONYMOUS_CODING CG31431 UPSTREAM CG31178
2R	8129613	2R_8129613_SNP [dm3] 2R_12242108_SNP [dm6]	T	A	4.114e^-4	0.782	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	11214612	2R_11214612_SNP [dm3] 2R_15327107_SNP [dm6]	A	T	4.129e^-4	0.782	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	4.132e^-4	0.782	INTERGENIC
3R	8365132	3R_8365132_SNP [dm3] 3R_12539410_SNP [dm6]	C	T	4.133e^-4	0.782	INTRON Octbeta3R
2L	7044668	2L_7044668_SNP [dm3] 2L_7044668_SNP [dm6]	C	G	4.139e^-4	0.782	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	4.140e^-4	0.782	DOWNSTREAM CG33098 INTRON CG34402
2R	8129495	2R_8129495_SNP [dm3] 2R_12241990_SNP [dm6]	C	T	4.142e^-4	0.782	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	14299637	3R_14299637_SNP [dm3] 3R_18473915_SNP [dm6]	A	T	4.145e^-4	0.782	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11625187	3R_11625187_SNP [dm3] 3R_15799465_SNP [dm6]	C	T	4.146e^-4	0.782	NON_SYNONYMOUS_CODING nsl1 UTR_3_PRIME nsl1
2R	8160595	2R_8160595_SNP [dm3] 2R_12273090_SNP [dm6]	T	C	4.159e^-4	0.783	INTRON Cam
2R	8160598	2R_8160598_SNP [dm3] 2R_12273093_SNP [dm6]	G	C	4.159e^-4	0.783	INTRON Cam
2L	7400193	2L_7400193_SNP [dm3] 2L_7400193_SNP [dm6]	A	T	4.165e^-4	0.784	DOWNSTREAM CR44079 INTERGENIC
3L	1070414	3L_1070414_SNP [dm3] 3L_1070414_SNP [dm6]	G	A	4.193e^-4	0.786	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	7044622	2L_7044622_SNP [dm3] 2L_7044622_SNP [dm6]	T	C	4.197e^-4	0.786	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8364201	2R_8364201_SNP [dm3] 2R_12476696_SNP [dm6]	G	A	4.198e^-4	0.786	INTRON Dh44-R2

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.524e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.086051
In_3R_K	0.009244

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	12.2532	0.0022

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2001 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	22820712	2L_22820712_SNP [dm3] 2L_22927980_SNP [dm6]	T	A	1.240e^-6	0.632	INTRON lt
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	2.523e^-6	0.632	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2R	7834712	2R_7834712_SNP [dm3] 2R_11947207_SNP [dm6]	T	C	2.837e^-6	0.632	INTRON CG13188
2L	22709561	2L_22709561_SNP [dm3] 2L_22816829_SNP [dm6]	G	A	2.901e^-6	0.632	INTERGENIC
2L	22644486	2L_22644486_SNP [dm3] 2L_22751754_SNP [dm6]	C	A	3.119e^-6	0.632	INTRON CG40006 EXON CR43927
X	3983424	X_3983424_SNP [dm3] X_4089391_SNP [dm6]	G	A	3.919e^-6	0.632	INTRON CG43689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	22618160	2L_22618160_SNP [dm3] 2L_22725428_SNP [dm6]	T	A	4.165e^-6	0.632	INTRON CG40006
2L	6581293	2L_6581293_SNP [dm3] 2L_6581293_SNP [dm6]	C	G	4.177e^-6	0.632	INTRON CG11319
2L	22613358	2L_22613358_SNP [dm3] 2L_22720626_SNP [dm6]	T	C	4.388e^-6	0.632	INTRON CG40006
2L	22637027	2L_22637027_DEL [dm3] 2L_22744295_DEL [dm6]	GTGCC	AA	4.545e^-6	0.632	INTRON CG40006
2L	22596763	2L_22596763_SNP [dm3] 2L_22704031_SNP [dm6]	A	C	4.583e^-6	0.632	INTRON CG40006
3L	9870970	3L_9870970_SNP [dm3] 3L_9877870_SNP [dm6]	C	T	4.657e^-6	0.632	INTERGENIC
2L	22617684	2L_22617684_SNP [dm3] 2L_22724952_SNP [dm6]	T	C	4.677e^-6	0.632	INTRON CG40006
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	5.657e^-6	0.632	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	5.939e^-6	0.632	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22733760	2L_22733760_SNP [dm3] 2L_22841028_SNP [dm6]	A	T	6.276e^-6	0.632	INTERGENIC
X	21178791	X_21178791_SNP [dm3] X_21307764_SNP [dm6]	C	T	6.629e^-6	0.632	SYNONYMOUS_CODING CG1801	TF binding site BDTNP1_TFBS_twi
2L	22609381	2L_22609381_SNP [dm3] 2L_22716649_SNP [dm6]	A	G	6.923e^-6	0.632	INTRON CG40006
2L	22652211	2L_22652211_SNP [dm3] 2L_22759479_SNP [dm6]	G	T	7.012e^-6	0.632	INTERGENIC
2L	22630715	2L_22630715_SNP [dm3] 2L_22737983_SNP [dm6]	C	G	7.907e^-6	0.632	INTRON CG40006
2L	22631833	2L_22631833_SNP [dm3] 2L_22739101_SNP [dm6]	A	T	8.342e^-6	0.632	INTRON CG40006
2L	22631818	2L_22631818_SNP [dm3] 2L_22739086_SNP [dm6]	T	C	8.457e^-6	0.632	INTRON CG40006
2L	22625225	2L_22625225_SNP [dm3] 2L_22732493_SNP [dm6]	C	A	8.510e^-6	0.632	INTRON CG40006
2L	22626351	2L_22626351_DEL [dm3] 2L_22733619_DEL [dm6]	GG	G	8.885e^-6	0.632	INTRON CG40006
3R	8210917	3R_8210917_SNP [dm3] 3R_12385195_SNP [dm6]	T	G	9.431e^-6	0.632	INTRON GstD11
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	9.620e^-6	0.632	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2L	22704228	2L_22704228_SNP [dm3] 2L_22811496_SNP [dm6]	C	A	9.961e^-6	0.632	INTERGENIC
2L	22714814	2L_22714814_SNP [dm3] 2L_22822082_SNP [dm6]	A	G	9.961e^-6	0.632	INTERGENIC
3R	23903399	3R_23903399_SNP [dm3] 3R_28077677_SNP [dm6]	G	A	1.130e^-5	0.632	INTRON CG34362
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	1.136e^-5	0.632	NON_SYNONYMOUS_CODING CG30007
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	1.235e^-5	0.632	NON_SYNONYMOUS_CODING CG30007
2L	8311282	2L_8311282_SNP [dm3] 2L_8311282_SNP [dm6]	A	T	1.298e^-5	0.632	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	22626562	2L_22626562_SNP [dm3] 2L_22733830_SNP [dm6]	A	T	1.339e^-5	0.632	INTRON CG40006
3R	24262915	3R_24262915_SNP [dm3] 3R_28437193_SNP [dm6]	T	G	1.357e^-5	0.632	INTRON beat-VI
2L	22639394	2L_22639394_SNP [dm3] 2L_22746662_SNP [dm6]	G	A	1.390e^-5	0.632	INTRON CG40006
2L	22617799	2L_22617799_SNP [dm3] 2L_22725067_SNP [dm6]	C	T	1.418e^-5	0.632	INTRON CG40006
3R	8213155	3R_8213155_SNP [dm3] 3R_12387433_SNP [dm6]	G	T	1.448e^-5	0.632	UPSTREAM CG33098 INTRON CG34402 & 1 other
2R	9967141	2R_9967141_SNP [dm3] 2R_14079636_SNP [dm6]	T	A	1.486e^-5	0.632	INTRON Prosap
2L	22701799	2L_22701799_SNP [dm3] 2L_22809067_SNP [dm6]	G	A	1.566e^-5	0.632	INTERGENIC
3R	23901645	3R_23901645_SNP [dm3] 3R_28075923_SNP [dm6]	A	C	1.687e^-5	0.632	INTRON CG34362	TF binding site mE1_TFBS_inv
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	1.692e^-5	0.632	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	22610844	2L_22610844_INS [dm3] 2L_22718112_INS [dm6]	A	ACCTA	1.694e^-5	0.632	INTRON CG40006
2L	22637098	2L_22637098_SNP [dm3] 2L_22744366_SNP [dm6]	A	C	1.735e^-5	0.632	INTRON CG40006
2L	8372639	2L_8372639_SNP [dm3] 2L_8372639_SNP [dm6]	C	T	1.814e^-5	0.632	INTRON CG17292
2L	4917163	2L_4917163_SNP [dm3] 2L_4917163_SNP [dm6]	T	A	1.828e^-5	0.632	INTRON hoe1
2L	10691093	2L_10691093_SNP [dm3] 2L_10691093_SNP [dm6]	C	T	1.848e^-5	0.632	INTERGENIC
2L	22682289	2L_22682289_SNP [dm3] 2L_22789557_SNP [dm6]	C	A	1.849e^-5	0.632	INTERGENIC
2L	6581270	2L_6581270_SNP [dm3] 2L_6581270_SNP [dm6]	A	T	1.864e^-5	0.632	INTRON CG11319
3L	14109818	3L_14109818_SNP [dm3] 3L_14116718_SNP [dm6]	C	A	1.880e^-5	0.632	INTRON Sox21b
2L	22640780	2L_22640780_SNP [dm3] 2L_22748048_SNP [dm6]	A	G	1.906e^-5	0.632	INTRON CG40006
2L	22715265	2L_22715265_SNP [dm3] 2L_22822533_SNP [dm6]	G	A	1.938e^-5	0.632	INTERGENIC
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	1.942e^-5	0.632	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
X	4293765	X_4293765_SNP [dm3] X_4399732_SNP [dm6]	A	G	1.997e^-5	0.632	INTRON CR32773
2L	22596883	2L_22596883_SNP [dm3] 2L_22704151_SNP [dm6]	T	A	2.004e^-5	0.632	INTRON CG40006
3R	24263324	3R_24263324_SNP [dm3] 3R_28437602_SNP [dm6]	T	G	2.005e^-5	0.632	INTRON beat-VI
2L	22697318	2L_22697318_INS [dm3] 2L_22804586_INS [dm6]	A	AG	2.018e^-5	0.632	INTERGENIC
2L	22636266	2L_22636266_SNP [dm3] 2L_22743534_SNP [dm6]	G	T	2.035e^-5	0.632	INTRON CG40006
2L	7572459	2L_7572459_SNP [dm3] 2L_7572459_SNP [dm6]	A	G	2.131e^-5	0.632	INTRON RapGAP1
2L	22732809	2L_22732809_SNP [dm3] 2L_22840077_SNP [dm6]	A	G	2.145e^-5	0.632	INTERGENIC
3R	9642047	3R_9642047_SNP [dm3] 3R_13816325_SNP [dm6]	T	C	2.157e^-5	0.632	DOWNSTREAM CR43641 EXON CR43642
2L	10691095	2L_10691095_SNP [dm3] 2L_10691095_SNP [dm6]	A	C	2.164e^-5	0.632	INTERGENIC
3R	8213161	3R_8213161_INS [dm3] 3R_12387439_INS [dm6]	T	TTGATA	2.179e^-5	0.632	UPSTREAM CG33098 INTRON CG34402 & 1 other
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	2.197e^-5	0.632	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2L	22626360	2L_22626360_SNP [dm3] 2L_22733628_SNP [dm6]	T	G	2.205e^-5	0.632	INTRON CG40006
2L	22683141	2L_22683141_SNP [dm3] 2L_22790409_SNP [dm6]	A	T	2.207e^-5	0.632	INTERGENIC
2L	22655837	2L_22655837_SNP [dm3] 2L_22763105_SNP [dm6]	C	A	2.249e^-5	0.632	INTERGENIC
3R	13307719	3R_13307719_SNP [dm3] 3R_17481997_SNP [dm6]	G	A	2.273e^-5	0.632	SPLICE_SITE_REGION Dscam3 DOWNSTREAM Dscam3 INTRON Dscam3
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	2.330e^-5	0.632	UPSTREAM CG17292 INTRON CG17292
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	2.431e^-5	0.632	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3R	13856908	3R_13856908_SNP [dm3] 3R_18031186_SNP [dm6]	T	C	2.446e^-5	0.632	INTERGENIC
2L	22640804	2L_22640804_SNP [dm3] 2L_22748072_SNP [dm6]	G	A	2.485e^-5	0.632	INTRON CG40006
2L	22627816	2L_22627816_SNP [dm3] 2L_22735084_SNP [dm6]	T	C	2.509e^-5	0.632	INTRON CG40006
2L	7572449	2L_7572449_SNP [dm3] 2L_7572449_SNP [dm6]	A	G	2.515e^-5	0.632	INTRON RapGAP1
2L	22613344	2L_22613344_SNP [dm3] 2L_22720612_SNP [dm6]	T	C	2.624e^-5	0.632	INTRON CG40006
2L	22636855	2L_22636855_SNP [dm3] 2L_22744123_SNP [dm6]	G	A	2.656e^-5	0.632	INTRON CG40006
3R	16771739	3R_16771739_DEL [dm3] 3R_20946017_DEL [dm6]	CG	C	2.676e^-5	0.632	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1982820	3L_1982820_SNP [dm3] 3L_1982820_SNP [dm6]	G	T	2.699e^-5	0.632	INTERGENIC
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	2.726e^-5	0.632	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
2L	19557847	2L_19557847_DEL [dm3] 2L_19557847_DEL [dm6]	TTTTTGT	T	2.767e^-5	0.632	UPSTREAM Tep5 INTERGENIC
2L	22579668	2L_22579668_SNP [dm3] 2L_22686936_SNP [dm6]	G	C	2.782e^-5	0.632	INTRON CG40006
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	2.813e^-5	0.632	NON_SYNONYMOUS_CODING CG30007
2L	22594273	2L_22594273_SNP [dm3] 2L_22701541_SNP [dm6]	T	A	2.885e^-5	0.632	INTRON CG40006
3R	7370337	3R_7370337_SNP [dm3] 3R_11544615_SNP [dm6]	C	T	2.940e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22692875	2L_22692875_SNP [dm3] 2L_22800143_SNP [dm6]	A	G	2.951e^-5	0.632	INTERGENIC
2L	22678220	2L_22678220_SNP [dm3] 2L_22785488_SNP [dm6]	T	A	2.964e^-5	0.632	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	23971143	3R_23971143_SNP [dm3] 3R_28145421_SNP [dm6]	G	C	2.977e^-5	0.632	INTERGENIC
3R	17215667	3R_17215667_SNP [dm3] 3R_21389945_SNP [dm6]	T	C	3.012e^-5	0.632	SYNONYMOUS_CODING bap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22346051	3R_22346051_SNP [dm3] 3R_26520329_SNP [dm6]	T	C	3.023e^-5	0.632	INTRON plum EXON CR45226
2L	10792123	2L_10792123_SNP [dm3] 2L_10792123_SNP [dm6]	C	A	3.029e^-5	0.632	DOWNSTREAM CG31870 INTRON CG31869
2L	22692351	2L_22692351_SNP [dm3] 2L_22799619_SNP [dm6]	C	T	3.084e^-5	0.632	INTERGENIC
X	22232347	X_22232347_DEL [dm3] X_22830511_DEL [dm6]	GCTGCTG	G	3.123e^-5	0.632	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	8311265	2L_8311265_SNP [dm3] 2L_8311265_SNP [dm6]	G	T	3.162e^-5	0.632	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	22637965	2L_22637965_SNP [dm3] 2L_22745233_SNP [dm6]	A	G	3.165e^-5	0.632	INTRON CG40006
2R	12026902	2R_12026902_SNP [dm3] 2R_16139397_SNP [dm6]	C	G	3.167e^-5	0.632	INTRON Got1
3L	4889607	3L_4889607_SNP [dm3] 3L_4889607_SNP [dm6]	G	A	3.217e^-5	0.635	SPLICE_SITE_REGION CG17150 INTRON CG17150
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	3.325e^-5	0.638	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	3.376e^-5	0.638	UPSTREAM CG17292 INTRON CG17292
3R	13856909	3R_13856909_SNP [dm3] 3R_18031187_SNP [dm6]	G	A	3.433e^-5	0.638	INTERGENIC
3L	1529646	3L_1529646_SNP [dm3] 3L_1529646_SNP [dm6]	G	T	3.436e^-5	0.638	SYNONYMOUS_CODING Ir62a INTRON CG12090
3R	23884531	3R_23884531_SNP [dm3] 3R_28058809_SNP [dm6]	G	A	3.463e^-5	0.638	INTRON CG34362
2L	22629896	2L_22629896_SNP [dm3] 2L_22737164_SNP [dm6]	G	C	3.472e^-5	0.638	INTRON CG40006
X	13413216	X_13413216_SNP [dm3] X_13519183_SNP [dm6]	T	C	3.497e^-5	0.638	UTR_3_PRIME Neto INTRON Neto
2L	22600158	2L_22600158_DEL [dm3] 2L_22707426_DEL [dm6]	GGGGTC	T	3.510e^-5	0.638	INTRON CG40006
3L	11144328	3L_11144328_SNP [dm3] 3L_11151228_SNP [dm6]	G	A	3.537e^-5	0.638	START_GAINED CG32082 UTR_5_PRIME CG32082 UPSTREAM CG6216
3R	16771744	3R_16771744_DEL [dm3] 3R_20946022_DEL [dm6]	TG	C	3.598e^-5	0.64	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
2L	22672024	2L_22672024_DEL [dm3] 2L_22779292_DEL [dm6]	AA	A	3.619e^-5	0.64	INTERGENIC
2L	22671303	2L_22671303_SNP [dm3] 2L_22778571_SNP [dm6]	C	T	3.861e^-5	0.677	INTERGENIC
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	3.981e^-5	0.681	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
X	17578940	X_17578940_SNP [dm3] X_17684907_SNP [dm6]	T	A	3.988e^-5	0.681	INTRON chas
2L	22567671	2L_22567671_SNP [dm3] 2L_22674939_SNP [dm6]	C	T	4.026e^-5	0.681	INTRON CG40006
2L	22626368	2L_22626368_SNP [dm3] 2L_22733636_SNP [dm6]	T	C	4.055e^-5	0.681	INTRON CG40006
2L	3275579	2L_3275579_INS [dm3] 2L_3275579_INS [dm6]	A	AGCTAG	4.068e^-5	0.681	DOWNSTREAM CG3332 INTERGENIC
2L	8372116	2L_8372116_SNP [dm3] 2L_8372116_SNP [dm6]	A	G	4.149e^-5	0.687	UPSTREAM CG17292 INTRON CG17292
2R	15176003	2R_15176003_SNP [dm3] 2R_19288498_SNP [dm6]	A	C	4.173e^-5	0.687	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
3L	914449	3L_914449_SNP [dm3] 3L_914449_SNP [dm6]	G	T	4.260e^-5	0.695	UTR_5_PRIME Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12760322	2L_12760322_SNP [dm3] 2L_12760322_SNP [dm6]	G	A	4.302e^-5	0.696	DOWNSTREAM CG15483 INTERGENIC
2L	22154866	2L_22154866_SNP [dm3] 2L_22154866_SNP [dm6]	T	C	4.422e^-5	0.7	SYNONYMOUS_CODING CG42748	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad transposable element FlyBase
2R	4114462	2R_4114462_SNP [dm3] 2R_8226957_SNP [dm6]	C	T	4.435e^-5	0.7	DOWNSTREAM LRP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	8528806	2L_8528806_SNP [dm3] 2L_8528806_SNP [dm6]	A	C	4.521e^-5	0.7	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	4.553e^-5	0.7	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2L	22692231	2L_22692231_SNP [dm3] 2L_22799499_SNP [dm6]	A	G	4.607e^-5	0.7	INTERGENIC
3R	22079257	3R_22079257_SNP [dm3] 3R_26253535_SNP [dm6]	A	T	4.617e^-5	0.7	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	22585349	2L_22585349_SNP [dm3] 2L_22692617_SNP [dm6]	C	T	4.696e^-5	0.7	INTRON CG40006	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22681270	2L_22681270_SNP [dm3] 2L_22788538_SNP [dm6]	T	A	4.744e^-5	0.7	INTERGENIC
2L	9602126	2L_9602126_SNP [dm3] 2L_9602126_SNP [dm6]	C	G	4.753e^-5	0.7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3359041	2L_3359041_SNP [dm3] 2L_3359041_SNP [dm6]	A	T	4.775e^-5	0.7	UTR_3_PRIME CG34394 DOWNSTREAM CG8838
3R	8213528	3R_8213528_SNP [dm3] 3R_12387806_SNP [dm6]	T	C	4.892e^-5	0.7	SYNONYMOUS_CODING CG33098 UPSTREAM CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	22600166	2L_22600166_DEL [dm3] 2L_22707434_DEL [dm6]	GTAA	T	4.931e^-5	0.7	INTRON CG40006
2L	8311274	2L_8311274_SNP [dm3] 2L_8311274_SNP [dm6]	C	T	4.991e^-5	0.7	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	10877529	3R_10877529_SNP [dm3] 3R_15051807_SNP [dm6]	C	T	5.027e^-5	0.7	INTERGENIC
3L	14222280	3L_14222280_SNP [dm3] 3L_14229180_SNP [dm6]	C	A	5.033e^-5	0.7	INTRON nuf
2L	22733759	2L_22733759_SNP [dm3] 2L_22841027_SNP [dm6]	C	A	5.065e^-5	0.7	INTERGENIC
2L	1627005	2L_1627005_SNP [dm3] 2L_1627005_SNP [dm6]	A	G	5.070e^-5	0.7	UPSTREAM CR44603 INTERGENIC
3L	14109599	3L_14109599_SNP [dm3] 3L_14116499_SNP [dm6]	A	G	5.070e^-5	0.7	INTRON Sox21b
2R	14398543	2R_14398543_SNP [dm3] 2R_18511038_SNP [dm6]	T	A	5.132e^-5	0.7	INTERGENIC
2L	8527335	2L_8527335_SNP [dm3] 2L_8527335_SNP [dm6]	T	C	5.146e^-5	0.7	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26471041	3R_26471041_SNP [dm3] 3R_30645319_SNP [dm6]	A	T	5.175e^-5	0.7	NON_SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1
3L	4889602	3L_4889602_INS [dm3] 3L_4889602_INS [dm6]	G	GG	5.183e^-5	0.7	INTRON CG17150
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	5.190e^-5	0.7	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3L	18905891	3L_18905891_SNP [dm3] 3L_18912791_SNP [dm6]	G	A	5.255e^-5	0.704	DOWNSTREAM CG14077 INTRON CG14077
2L	22585482	2L_22585482_SNP [dm3] 2L_22692750_SNP [dm6]	T	C	5.317e^-5	0.707	INTRON CG40006
3R	19303942	3R_19303942_SNP [dm3] 3R_23478220_SNP [dm6]	T	G	5.366e^-5	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8204045	3R_8204045_SNP [dm3] 3R_12378323_SNP [dm6]	T	C	5.433e^-5	0.71	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	5.448e^-5	0.71	INTERGENIC
3R	21357731	3R_21357731_SNP [dm3] 3R_25532009_SNP [dm6]	G	A	5.493e^-5	0.71	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8801973	3L_8801973_SNP [dm3] 3L_8808873_SNP [dm6]	C	T	5.529e^-5	0.71	SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
3R	10599241	3R_10599241_SNP [dm3] 3R_14773519_SNP [dm6]	T	C	5.566e^-5	0.71	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12513329	3R_12513329_SNP [dm3] 3R_16687607_SNP [dm6]	A	G	5.729e^-5	0.717	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14000232	2L_14000232_SNP [dm3] 2L_14000232_SNP [dm6]	T	A	5.754e^-5	0.717	INTRON rk
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	5.758e^-5	0.717	NON_SYNONYMOUS_CODING CG30007
X	3213834	X_3213834_SNP [dm3] X_3319801_SNP [dm6]	G	A	5.775e^-5	0.717	INTRON dnc & 1 other
2L	22666568	2L_22666568_SNP [dm3] 2L_22773836_SNP [dm6]	G	A	5.974e^-5	0.731	INTERGENIC
2L	22701138	2L_22701138_SNP [dm3] 2L_22808406_SNP [dm6]	C	A	5.983e^-5	0.731	INTERGENIC
2R	12025934	2R_12025934_SNP [dm3] 2R_16138429_SNP [dm6]	A	G	6.021e^-5	0.731	SYNONYMOUS_CODING Got1 UPSTREAM Got1 DOWNSTREAM spin
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	6.037e^-5	0.731	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	6.162e^-5	0.736	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9526161	3L_9526161_SNP [dm3] 3L_9533061_SNP [dm6]	A	T	6.164e^-5	0.736	INTERGENIC
2L	8311275	2L_8311275_SNP [dm3] 2L_8311275_SNP [dm6]	T	G	6.288e^-5	0.743	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	12421015	2R_12421015_SNP [dm3] 2R_16533510_SNP [dm6]	T	G	6.317e^-5	0.743	DOWNSTREAM Sema-2a INTERGENIC
3R	27143473	3R_27143473_SNP [dm3] 3R_31317751_SNP [dm6]	T	C	6.338e^-5	0.743	INTRON CG34347
3R	20374920	3R_20374920_SNP [dm3] 3R_24549198_SNP [dm6]	T	G	6.452e^-5	0.752	INTRON Esyt2	TF binding site BDTNP1_TFBS_z
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	6.645e^-5	0.764	INTRON CG30007
2L	2001790	2L_2001790_SNP [dm3] 2L_2001790_SNP [dm6]	A	G	6.710e^-5	0.764	INTRON CG33543 EXON CR43464
2R	3798078	2R_3798078_SNP [dm3] 2R_7910573_SNP [dm6]	G	A	6.805e^-5	0.764	INTRON CG30377
X	17578946	X_17578946_SNP [dm3] X_17684913_SNP [dm6]	C	T	6.858e^-5	0.764	INTRON chas
2L	22612841	2L_22612841_SNP [dm3] 2L_22720109_SNP [dm6]	T	C	6.874e^-5	0.764	INTRON CG40006
3L	3960241	3L_3960241_SNP [dm3] 3L_3960241_SNP [dm6]	G	T	6.879e^-5	0.764	UPSTREAM CG12605 INTRON CG12605
3R	22987039	3R_22987039_SNP [dm3] 3R_27161317_SNP [dm6]	C	A	7.012e^-5	0.764	UTR_5_PRIME CG5909
2R	9488465	2R_9488465_SNP [dm3] 2R_13600960_SNP [dm6]	T	C	7.047e^-5	0.764	NON_SYNONYMOUS_CODING CG43058
2L	22739461	2L_22739461_SNP [dm3] 2L_22846729_SNP [dm6]	G	T	7.103e^-5	0.764	INTRON CG17715
2R	6970468	2R_6970468_SNP [dm3] 2R_11082963_SNP [dm6]	C	T	7.106e^-5	0.764	INTRON luna
2L	22614023	2L_22614023_SNP [dm3] 2L_22721291_SNP [dm6]	A	T	7.129e^-5	0.764	INTRON CG40006
3R	25186104	3R_25186104_SNP [dm3] 3R_29360382_SNP [dm6]	T	A	7.140e^-5	0.764	INTERGENIC
2R	5731415	2R_5731415_SNP [dm3] 2R_9843910_SNP [dm6]	G	T	7.177e^-5	0.764	SPLICE_SITE_REGION CG1667 INTRON CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	22816599	2L_22816599_SNP [dm3] 2L_22923867_SNP [dm6]	G	T	7.193e^-5	0.764	UPSTREAM lt INTERGENIC
2L	22626075	2L_22626075_DEL [dm3] 2L_22733343_DEL [dm6]	AG	A	7.262e^-5	0.764	INTRON CG40006
3R	17201918	3R_17201918_SNP [dm3] 3R_21376196_SNP [dm6]	C	A	7.330e^-5	0.764	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	7.333e^-5	0.764	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
3R	22088039	3R_22088039_SNP [dm3] 3R_26262317_SNP [dm6]	C	T	7.377e^-5	0.764	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17376660	2L_17376660_SNP [dm3] 2L_17376660_SNP [dm6]	G	A	7.408e^-5	0.764	INTRON Lrch	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	22610862	2L_22610862_SNP [dm3] 2L_22718130_SNP [dm6]	G	C	7.434e^-5	0.764	INTRON CG40006
X	17286546	X_17286546_SNP [dm3] X_17392513_SNP [dm6]	G	C	7.436e^-5	0.764	INTERGENIC
2R	17221391	2R_17221391_SNP [dm3] 2R_21333886_SNP [dm6]	G	A	7.449e^-5	0.764	UPSTREAM snoRNA:Psi18S-1389a & 1 other INTRON dom	TF binding site mE1_TFBS_cad
X	21310790	X_21310790_SNP [dm3] X_21439763_SNP [dm6]	G	A	7.675e^-5	0.779	INTRON CG42343	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22626488	2L_22626488_SNP [dm3] 2L_22733756_SNP [dm6]	A	C	7.695e^-5	0.779	INTRON CG40006
2R	5731251	2R_5731251_SNP [dm3] 2R_9843746_SNP [dm6]	C	T	7.783e^-5	0.779	START_GAINED CG1667 UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	5374271	3L_5374271_SNP [dm3] 3L_5381171_SNP [dm6]	T	C	7.789e^-5	0.779	INTRON Ir64a
2R	16857326	2R_16857326_SNP [dm3] 2R_20969821_SNP [dm6]	T	C	7.805e^-5	0.779	INTERGENIC
3R	8213561	3R_8213561_SNP [dm3] 3R_12387839_SNP [dm6]	C	A	7.894e^-5	0.783	SYNONYMOUS_CODING CG33098 UTR_5_PRIME CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
3L	9751898	3L_9751898_SNP [dm3] 3L_9758798_SNP [dm6]	G	A	8.054e^-5	0.793	INTRON CG42268
X	20818002	X_20818002_SNP [dm3] X_20946975_SNP [dm6]	T	C	8.116e^-5	0.793	INTERGENIC
2L	11480234	2L_11480234_SNP [dm3] 2L_11480234_SNP [dm6]	G	T	8.140e^-5	0.793	INTERGENIC
3L	1563473	3L_1563473_SNP [dm3] 3L_1563473_SNP [dm6]	A	C	8.161e^-5	0.793	INTRON CG7879
3L	4889635	3L_4889635_SNP [dm3] 3L_4889635_SNP [dm6]	G	A	8.269e^-5	0.796	SYNONYMOUS_CODING CG17150
X	17579003	X_17579003_SNP [dm3] X_17684970_SNP [dm6]	G	A	8.348e^-5	0.796	INTRON chas
3R	17034567	3R_17034567_SNP [dm3] 3R_21208845_SNP [dm6]	C	T	8.357e^-5	0.796	INTRON SNF4Agamma
3L	9526296	3L_9526296_SNP [dm3] 3L_9533196_SNP [dm6]	G	A	8.449e^-5	0.796	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10259806	3R_10259806_SNP [dm3] 3R_14434084_SNP [dm6]	T	A	8.509e^-5	0.796	INTRON cv-c
3R	24263429	3R_24263429_SNP [dm3] 3R_28437707_SNP [dm6]	C	T	8.517e^-5	0.796	INTRON beat-VI
2L	3455543	2L_3455543_SNP [dm3] 2L_3455543_SNP [dm6]	A	G	8.518e^-5	0.796	INTRON Cog3
2L	22673630	2L_22673630_INS [dm3] 2L_22780898_INS [dm6]	A	AAGTAAATAATTACAGTTTA...	8.525e^-5	0.796	INTERGENIC
2R	15176000	2R_15176000_SNP [dm3] 2R_19288495_SNP [dm6]	C	T	8.736e^-5	0.806	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
2L	22629449	2L_22629449_SNP [dm3] 2L_22736717_SNP [dm6]	T	C	8.782e^-5	0.806	INTRON CG40006
2L	19557888	2L_19557888_DEL [dm3] 2L_19557888_DEL [dm6]	ATCCAATTTGGCCATTTTGG...	A	8.806e^-5	0.806	UPSTREAM Tep5 INTERGENIC
3R	7633265	3R_7633265_INS [dm3] 3R_11807543_INS [dm6]	T	TA	8.886e^-5	0.806	UPSTREAM ClC-a INTRON ClC-a
X	20869168	X_20869168_SNP [dm3] X_20998141_SNP [dm6]	A	T	8.912e^-5	0.806	INTERGENIC
2L	14000384	2L_14000384_SNP [dm3] 2L_14000384_SNP [dm6]	T	A	8.946e^-5	0.806	INTRON rk
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	8.979e^-5	0.806	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9465068	2L_9465068_SNP [dm3] 2L_9465068_SNP [dm6]	T	A	9.027e^-5	0.806	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
X	20446362	X_20446362_DEL [dm3] X_20575335_DEL [dm6]	GGG	T	9.029e^-5	0.806	DOWNSTREAM CG42580 INTERGENIC
3L	1586811	3L_1586811_SNP [dm3] 3L_1586811_SNP [dm6]	A	T	9.073e^-5	0.806	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	22595141	2L_22595141_SNP [dm3] 2L_22702409_SNP [dm6]	A	G	9.106e^-5	0.806	INTRON CG40006
3R	13856926	3R_13856926_SNP [dm3] 3R_18031204_SNP [dm6]	C	T	9.165e^-5	0.807	INTERGENIC
3R	15075212	3R_15075212_SNP [dm3] 3R_19249490_SNP [dm6]	C	T	9.249e^-5	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	1032475	2R_1032475_MNP [dm3] 2R_5144970_MNP [dm6]	GCTG	AAAT	9.298e^-5	0.807	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3492191	3L_3492191_SNP [dm3] 3L_3492191_SNP [dm6]	G	A	9.299e^-5	0.807	INTRON CG42324
2L	10691045	2L_10691045_SNP [dm3] 2L_10691045_SNP [dm6]	C	T	9.357e^-5	0.809	INTERGENIC
X	20834224	X_20834224_SNP [dm3] X_20963197_SNP [dm6]	T	G	9.449e^-5	0.811	SYNONYMOUS_CODING Ser6
2L	22554214	2L_22554214_SNP [dm3] 2L_22661482_SNP [dm6]	A	G	9.465e^-5	0.811	INTRON CG40006
2L	1885917	2L_1885917_SNP [dm3] 2L_1885917_SNP [dm6]	G	A	9.563e^-5	0.815	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22631347	3R_22631347_SNP [dm3] 3R_26805625_SNP [dm6]	G	C	9.785e^-5	0.817	DOWNSTREAM snoRNA:Me28S-U1554 INTRON Tl
3R	11261849	3R_11261849_SNP [dm3] 3R_15436127_SNP [dm6]	T	C	9.837e^-5	0.817	INTERGENIC
3R	19305005	3R_19305005_SNP [dm3] 3R_23479283_SNP [dm6]	A	G	9.901e^-5	0.817	INTERGENIC
3L	8415533	3L_8415533_SNP [dm3] 3L_8422433_SNP [dm6]	T	G	1.001e^-4	0.817	UPSTREAM CG32354 INTERGENIC
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	1.006e^-4	0.817	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	22821952	2L_22821952_SNP [dm3] 2L_22929220_SNP [dm6]	C	G	1.008e^-4	0.817	INTRON lt
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	1.011e^-4	0.817	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
2L	18984709	2L_18984709_SNP [dm3] 2L_18984709_SNP [dm6]	T	A	1.016e^-4	0.817	INTRON Swip-1
2L	22674656	2L_22674656_DEL [dm3] 2L_22781924_DEL [dm6]	TTGA	T	1.019e^-4	0.817	INTERGENIC
3R	10259775	3R_10259775_SNP [dm3] 3R_14434053_SNP [dm6]	T	A	1.034e^-4	0.817	INTRON cv-c
2L	8530717	2L_8530717_SNP [dm3] 2L_8530717_SNP [dm6]	A	T	1.039e^-4	0.817	INTRON CG17834
3L	15157129	3L_15157129_SNP [dm3] 3L_15164029_SNP [dm6]	T	A	1.040e^-4	0.817	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12760271	2L_12760271_SNP [dm3] 2L_12760271_SNP [dm6]	T	G	1.042e^-4	0.817	DOWNSTREAM CG15483 INTERGENIC
2L	2003377	2L_2003377_SNP [dm3] 2L_2003377_SNP [dm6]	G	A	1.046e^-4	0.817	INTRON CR43464 & 1 other
3R	16820892	3R_16820892_SNP [dm3] 3R_20995170_SNP [dm6]	A	G	1.050e^-4	0.817	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22693301	2L_22693301_SNP [dm3] 2L_22800569_SNP [dm6]	G	T	1.051e^-4	0.817	INTERGENIC
X	21178743	X_21178743_SNP [dm3] X_21307716_SNP [dm6]	C	A	1.054e^-4	0.817	SYNONYMOUS_CODING CG1801	TF binding site BDTNP1_TFBS_twi
3R	20195165	3R_20195165_SNP [dm3] 3R_24369443_SNP [dm6]	T	G	1.055e^-4	0.817	UPSTREAM CG13614 DOWNSTREAM CG33341 INTERGENIC
2R	1032480	2R_1032480_SNP [dm3] 2R_5144975_SNP [dm6]	C	G	1.057e^-4	0.817	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.059e^-4	0.817	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
3L	3565167	3L_3565167_SNP [dm3] 3L_3565167_SNP [dm6]	G	T	1.059e^-4	0.817	INTRON Eip63E
2R	5731291	2R_5731291_SNP [dm3] 2R_9843786_SNP [dm6]	C	T	1.064e^-4	0.817	UTR_5_PRIME CG1667 UPSTREAM CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	22621339	2L_22621339_SNP [dm3] 2L_22728607_SNP [dm6]	T	C	1.066e^-4	0.817	INTRON CG40006	TF binding site mE1_TFBS_cad
2L	22625250	2L_22625250_INS [dm3] 2L_22732518_INS [dm6]	G	GG	1.074e^-4	0.817	INTRON CG40006
2L	22625253	2L_22625253_DEL [dm3] 2L_22732521_DEL [dm6]	TTCTTT	T	1.074e^-4	0.817	INTRON CG40006
3L	16700933	3L_16700933_SNP [dm3] 3L_16707833_SNP [dm6]	A	G	1.076e^-4	0.817	INTRON Lasp & 1 other
2L	10546048	2L_10546048_SNP [dm3] 2L_10546048_SNP [dm6]	G	A	1.076e^-4	0.817	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3509319	3L_3509319_SNP [dm3] 3L_3509319_SNP [dm6]	C	G	1.095e^-4	0.824	UTR_3_PRIME CG42324
2L	3362567	2L_3362567_SNP [dm3] 2L_3362567_SNP [dm6]	G	A	1.101e^-4	0.824	SYNONYMOUS_CODING CG34394 INTRON CG34394	TF binding site mE1_TFBS_cad
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	1.103e^-4	0.824	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
2L	22606841	2L_22606841_SNP [dm3] 2L_22714109_SNP [dm6]	A	G	1.109e^-4	0.824	INTRON CG40006
2R	19500554	2R_19500554_SNP [dm3] 2R_23613031_SNP [dm6]	T	G	1.110e^-4	0.824	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
2L	3455658	2L_3455658_SNP [dm3] 2L_3455658_SNP [dm6]	T	C	1.111e^-4	0.824	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
3R	23892151	3R_23892151_SNP [dm3] 3R_28066429_SNP [dm6]	C	T	1.119e^-4	0.824	INTRON CG34362
2R	3667344	2R_3667344_DEL [dm3] 2R_7779839_DEL [dm6]	TT	T	1.120e^-4	0.824	UTR_5_PRIME CG45093 & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	23497586	3R_23497586_SNP [dm3] 3R_27671864_SNP [dm6]	T	C	1.132e^-4	0.827	INTRON unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14077920	2R_14077920_SNP [dm3] 2R_18190415_SNP [dm6]	C	T	1.134e^-4	0.827	DOWNSTREAM CG14500 INTRON CG33958
2R	17410987	2R_17410987_SNP [dm3] 2R_21523482_SNP [dm6]	T	C	1.146e^-4	0.827	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	4912600	2R_4912600_SNP [dm3] 2R_9025095_SNP [dm6]	A	C	1.147e^-4	0.827	INTRON CG8170	TF binding site mE1_TFBS_HSA
2R	4114986	2R_4114986_SNP [dm3] 2R_8227481_SNP [dm6]	G	A	1.150e^-4	0.827	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10059701	X_10059701_SNP [dm3] X_10165668_SNP [dm6]	T	A	1.150e^-4	0.827	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21328929	3R_21328929_DEL [dm3] 3R_25503207_DEL [dm6]	TTACATTTT	T	1.162e^-4	0.831	UPSTREAM CR45651 & 1 other EXON CR43457
2L	22641409	2L_22641409_SNP [dm3] 2L_22748677_SNP [dm6]	A	G	1.168e^-4	0.831	INTRON CG40006
2L	22657396	2L_22657396_SNP [dm3] 2L_22764664_SNP [dm6]	G	T	1.169e^-4	0.831	INTERGENIC
3R	19033727	3R_19033727_SNP [dm3] 3R_23208005_SNP [dm6]	C	T	1.184e^-4	0.838	INTRON cnc
2R	5732693	2R_5732693_SNP [dm3] 2R_9845188_SNP [dm6]	G	A	1.193e^-4	0.84	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
3L	15157133	3L_15157133_SNP [dm3] 3L_15164033_SNP [dm6]	C	T	1.196e^-4	0.84	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14096893	3L_14096893_INS [dm3] 3L_14103793_INS [dm6]	T	TAATA	1.204e^-4	0.843	UTR_3_PRIME Sox21a
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	1.210e^-4	0.844	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17286684	X_17286684_SNP [dm3] X_17392651_SNP [dm6]	A	T	1.214e^-4	0.844	INTERGENIC
2R	12808661	2R_12808661_SNP [dm3] 2R_16921156_SNP [dm6]	T	G	1.231e^-4	0.847	INTERGENIC
3L	1358326	3L_1358326_SNP [dm3] 3L_1358326_SNP [dm6]	T	A	1.234e^-4	0.847	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	22606465	2L_22606465_SNP [dm3] 2L_22713733_SNP [dm6]	G	A	1.234e^-4	0.847	INTRON CG40006
3R	14819162	3R_14819162_SNP [dm3] 3R_18993440_SNP [dm6]	G	A	1.238e^-4	0.847	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	1.246e^-4	0.85	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	5568361	3L_5568361_SNP [dm3] 3L_5575261_SNP [dm6]	A	C	1.254e^-4	0.853	UPSTREAM Msr-110 INTRON Msr-110
2L	12308065	2L_12308065_SNP [dm3] 2L_12308065_SNP [dm6]	G	T	1.279e^-4	0.854	INTRON aret
2L	9485734	2L_9485734_SNP [dm3] 2L_9485734_SNP [dm6]	T	A	1.286e^-4	0.854	INTERGENIC
2R	10541735	2R_10541735_SNP [dm3] 2R_14654230_SNP [dm6]	C	T	1.287e^-4	0.854	INTERGENIC
3L	14109854	3L_14109854_SNP [dm3] 3L_14116754_SNP [dm6]	T	A	1.287e^-4	0.854	INTRON Sox21b
3L	1982824	3L_1982824_SNP [dm3] 3L_1982824_SNP [dm6]	T	C	1.287e^-4	0.854	INTERGENIC
3L	2954217	3L_2954217_SNP [dm3] 3L_2954217_SNP [dm6]	A	G	1.291e^-4	0.854	DOWNSTREAM Shab INTRON Shab
3R	14367110	3R_14367110_SNP [dm3] 3R_18541388_SNP [dm6]	G	C	1.292e^-4	0.854	INTRON fru
2R	19086915	2R_19086915_SNP [dm3] 2R_23199392_SNP [dm6]	T	C	1.297e^-4	0.854	INTRON CG34371
3L	8312772	3L_8312772_SNP [dm3] 3L_8319672_SNP [dm6]	G	A	1.298e^-4	0.854	UPSTREAM CG43059 INTERGENIC
3R	23884719	3R_23884719_SNP [dm3] 3R_28058997_SNP [dm6]	G	A	1.313e^-4	0.859	INTRON CG34362
3R	10877686	3R_10877686_SNP [dm3] 3R_15051964_SNP [dm6]	A	T	1.315e^-4	0.859	INTERGENIC
3R	27143441	3R_27143441_SNP [dm3] 3R_31317719_SNP [dm6]	G	A	1.323e^-4	0.862	INTRON CG34347
3L	2262732	3L_2262732_SNP [dm3] 3L_2262732_SNP [dm6]	G	T	1.333e^-4	0.865	UPSTREAM CG13807 & 1 other DOWNSTREAM ecd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	12562628	2R_12562628_SNP [dm3] 2R_16675123_SNP [dm6]	T	C	1.340e^-4	0.867	INTRON CG30463
X	4229605	X_4229605_SNP [dm3] X_4335572_SNP [dm6]	C	T	1.349e^-4	0.869	INTRON norpA
2R	12510362	2R_12510362_SNP [dm3] 2R_16622857_SNP [dm6]	G	A	1.359e^-4	0.87	INTRON CG5065	TF binding site mE1_TFBS_cad
2L	7538135	2L_7538135_SNP [dm3] 2L_7538135_SNP [dm6]	G	A	1.361e^-4	0.87	INTRON RapGAP1	TF binding site mE1_TFBS_zfh1
3R	23884703	3R_23884703_SNP [dm3] 3R_28058981_SNP [dm6]	A	G	1.368e^-4	0.87	INTRON CG34362
X	10778190	X_10778190_DEL [dm3] X_10884157_DEL [dm6]	TCTCGATGAT	T	1.369e^-4	0.87	INTRON Ork1
2L	11255920	2L_11255920_SNP [dm3] 2L_11255920_SNP [dm6]	G	T	1.376e^-4	0.87	SYNONYMOUS_CODING ab INTRON ab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1925916	3R_1925916_SNP [dm3] 3R_6100194_SNP [dm6]	T	C	1.381e^-4	0.87	INTRON Gasp	TF binding site mE1_TFBS_sens
3R	23868831	3R_23868831_INS [dm3] 3R_28043109_INS [dm6]	C	CTCTG	1.383e^-4	0.87	INTRON CG34362
3R	27173740	3R_27173740_SNP [dm3] 3R_31348018_SNP [dm6]	G	A	1.391e^-4	0.871	INTRON CG34347
2R	10541783	2R_10541783_SNP [dm3] 2R_14654278_SNP [dm6]	G	T	1.395e^-4	0.871	INTERGENIC
2L	5907967	2L_5907967_SNP [dm3] 2L_5907967_SNP [dm6]	A	G	1.404e^-4	0.871	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8527155	2L_8527155_SNP [dm3] 2L_8527155_SNP [dm6]	C	T	1.412e^-4	0.871	NON_SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16562310	2R_16562310_SNP [dm3] 2R_20674805_SNP [dm6]	C	T	1.413e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10299528	3R_10299528_DEL [dm3] 3R_14473806_DEL [dm6]	AATTTCCTT	A	1.414e^-4	0.871	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19650058	X_19650058_SNP [dm3] X_19756025_SNP [dm6]	T	C	1.418e^-4	0.871	INTRON Pmp70
2L	4690947	2L_4690947_SNP [dm3] 2L_4690947_SNP [dm6]	T	A	1.420e^-4	0.871	UPSTREAM CG3251 INTERGENIC
3R	25022790	3R_25022790_SNP [dm3] 3R_29197068_SNP [dm6]	A	C	1.430e^-4	0.874	UPSTREAM CG14515 INTERGENIC
2L	22714904	2L_22714904_SNP [dm3] 2L_22822172_SNP [dm6]	G	T	1.438e^-4	0.876	INTERGENIC
X	21178482	X_21178482_SNP [dm3] X_21307455_SNP [dm6]	T	A	1.451e^-4	0.88	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16145990	2R_16145990_SNP [dm3] 2R_20258485_SNP [dm6]	A	G	1.458e^-4	0.88	NON_SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15571994	3L_15571994_SNP [dm3] 3L_15578894_SNP [dm6]	A	G	1.459e^-4	0.88	UTR_3_PRIME mrn DOWNSTREAM CG16979	TF binding site mE1_TFBS_cad
2R	14672264	2R_14672264_SNP [dm3] 2R_18784759_SNP [dm6]	T	A	1.469e^-4	0.88	INTRON CG15080	enhancer mE1_CBP_Enhancers
3L	1637006	3L_1637006_INS [dm3] 3L_1637006_INS [dm6]	G	GGTG	1.489e^-4	0.88	UTR_5_PRIME nSyb DOWNSTREAM metl	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	16163035	3L_16163035_SNP [dm3] 3L_16169935_SNP [dm6]	G	T	1.492e^-4	0.88	SYNONYMOUS_CODING CG33796 DOWNSTREAM CG33795
3R	14364849	3R_14364849_SNP [dm3] 3R_18539127_SNP [dm6]	G	T	1.493e^-4	0.88	INTRON fru
2L	9836243	2L_9836243_SNP [dm3] 2L_9836243_SNP [dm6]	C	T	1.494e^-4	0.88	INTRON nAChRalpha6
3R	19304632	3R_19304632_SNP [dm3] 3R_23478910_SNP [dm6]	C	T	1.494e^-4	0.88	INTERGENIC
X	19172186	X_19172186_SNP [dm3] X_19278153_SNP [dm6]	T	A	1.496e^-4	0.88	INTRON CG8028
2L	2855687	2L_2855687_SNP [dm3] 2L_2855687_SNP [dm6]	C	T	1.499e^-4	0.88	UTR_5_PRIME CG3104 UPSTREAM RpS21 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
2R	9637033	2R_9637033_SNP [dm3] 2R_13749528_SNP [dm6]	A	G	1.501e^-4	0.88	DOWNSTREAM fas INTERGENIC
X	14209478	X_14209478_SNP [dm3] X_14315445_SNP [dm6]	G	A	1.516e^-4	0.88	DOWNSTREAM betaNACtes6 INTRON betaNACtes2
3L	1982826	3L_1982826_SNP [dm3] 3L_1982826_SNP [dm6]	A	G	1.522e^-4	0.88	INTERGENIC
2L	4929825	2L_4929825_SNP [dm3] 2L_4929825_SNP [dm6]	C	A	1.523e^-4	0.88	INTRON hoe1
3L	2841886	3L_2841886_SNP [dm3] 3L_2841886_SNP [dm6]	G	A	1.527e^-4	0.88	INTRON CG43444
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	1.533e^-4	0.88	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11439881	2L_11439881_SNP [dm3] 2L_11439881_SNP [dm6]	C	G	1.545e^-4	0.88	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14398881	2R_14398881_SNP [dm3] 2R_18511376_SNP [dm6]	T	A	1.547e^-4	0.88	INTERGENIC
X	16802166	X_16802166_SNP [dm3] X_16908133_SNP [dm6]	A	T	1.552e^-4	0.88	INTRON CR44754
X	18966400	X_18966400_SNP [dm3] X_19072367_SNP [dm6]	C	G	1.555e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9507229	2L_9507229_SNP [dm3] 2L_9507229_SNP [dm6]	T	C	1.561e^-4	0.88	INTRON CG33298
2L	5327193	2L_5327193_DEL [dm3] 2L_5327193_DEL [dm6]	TT	T	1.561e^-4	0.88	UPSTREAM cype & 1 other DOWNSTREAM CR44985 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14536179	2R_14536179_SNP [dm3] 2R_18648674_SNP [dm6]	T	A	1.568e^-4	0.88	INTRON SP2637
3R	5464003	3R_5464003_SNP [dm3] 3R_9638281_SNP [dm6]	G	T	1.572e^-4	0.88	UPSTREAM Scm INTRON Dh44	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6576202	3R_6576202_SNP [dm3] 3R_10750480_SNP [dm6]	G	T	1.573e^-4	0.88	UTR_5_PRIME TkR86C
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	1.587e^-4	0.88	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	1.592e^-4	0.88	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1846011	2L_1846011_SNP [dm3] 2L_1846011_SNP [dm6]	G	C	1.595e^-4	0.88	INTRON wry
3R	8495722	3R_8495722_SNP [dm3] 3R_12670000_SNP [dm6]	C	T	1.600e^-4	0.88	INTRON CG14395	TF binding site mE1_TFBS_cad
2L	1885857	2L_1885857_SNP [dm3] 2L_1885857_SNP [dm6]	T	G	1.605e^-4	0.88	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16426583	3L_16426583_SNP [dm3] 3L_16433483_SNP [dm6]	G	A	1.609e^-4	0.88	INTRON CG33158 & 1 other
2R	12763524	2R_12763524_SNP [dm3] 2R_16876019_SNP [dm6]	G	A	1.612e^-4	0.88	INTRON CG8910
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	1.613e^-4	0.88	UPSTREAM CG17292 INTRON CG17292
2L	5907982	2L_5907982_SNP [dm3] 2L_5907982_SNP [dm6]	C	T	1.614e^-4	0.88	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3645697	X_3645697_SNP [dm3] X_3751664_SNP [dm6]	T	A	1.617e^-4	0.88	INTRON tlk
2L	14573282	2L_14573282_SNP [dm3] 2L_14573282_SNP [dm6]	G	C	1.628e^-4	0.88	INTERGENIC
2R	18037249	2R_18037249_SNP [dm3] 2R_22149744_SNP [dm6]	T	A	1.630e^-4	0.88	INTRON a
2R	18037250	2R_18037250_SNP [dm3] 2R_22149745_SNP [dm6]	C	A	1.630e^-4	0.88	INTRON a
2L	4690911	2L_4690911_SNP [dm3] 2L_4690911_SNP [dm6]	G	A	1.633e^-4	0.88	UPSTREAM CG3251 INTERGENIC
X	18966397	X_18966397_SNP [dm3] X_19072364_SNP [dm6]	C	T	1.645e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4070699	2R_4070699_SNP [dm3] 2R_8183194_SNP [dm6]	T	A	1.648e^-4	0.881	INTRON LRP1
2R	4114985	2R_4114985_SNP [dm3] 2R_8227480_SNP [dm6]	G	A	1.649e^-4	0.881	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17167213	2R_17167213_SNP [dm3] 2R_21279708_SNP [dm6]	T	C	1.670e^-4	0.887	INTRON Rgk3
2R	5732852	2R_5732852_SNP [dm3] 2R_9845347_SNP [dm6]	A	G	1.680e^-4	0.887	UTR_3_PRIME CG1667 DOWNSTREAM Orc6
3L	14096581	3L_14096581_SNP [dm3] 3L_14103481_SNP [dm6]	G	A	1.686e^-4	0.887	UTR_3_PRIME Sox21a
2L	5908518	2L_5908518_SNP [dm3] 2L_5908518_SNP [dm6]	C	T	1.687e^-4	0.887	SYNONYMOUS_CODING bchs DOWNSTREAM CG14000	TF binding site BDTNP1_TFBS_dl
2L	4868249	2L_4868249_SNP [dm3] 2L_4868249_SNP [dm6]	T	A	1.698e^-4	0.887	INTRON pog
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	1.699e^-4	0.887	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5794878	2R_5794878_SNP [dm3] 2R_9907373_SNP [dm6]	G	T	1.727e^-4	0.887	INTRON FMRFa	TF binding site mE1_TFBS_HSA
3L	1437878	3L_1437878_SNP [dm3] 3L_1437878_SNP [dm6]	C	A	1.735e^-4	0.887	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12562635	2R_12562635_SNP [dm3] 2R_16675130_SNP [dm6]	T	C	1.743e^-4	0.887	INTRON CG30463
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	1.755e^-4	0.887	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6539425	2R_6539425_INS [dm3] 2R_10651920_INS [dm6]	C	CCAAGTC	1.760e^-4	0.887	INTERGENIC
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	1.761e^-4	0.887	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	1.761e^-4	0.887	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4023067	2L_4023067_SNP [dm3] 2L_4023067_SNP [dm6]	T	G	1.762e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17024748	2R_17024748_SNP [dm3] 2R_21137243_SNP [dm6]	T	A	1.764e^-4	0.887	INTRON Magi
3L	13982681	3L_13982681_SNP [dm3] 3L_13989581_SNP [dm6]	T	G	1.766e^-4	0.887	DOWNSTREAM CG9040 INTRON CG17364
3R	17066294	3R_17066294_SNP [dm3] 3R_21240572_SNP [dm6]	C	T	1.767e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
3L	9586018	3L_9586018_SNP [dm3] 3L_9592918_SNP [dm6]	G	A	1.770e^-4	0.887	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	6581256	2L_6581256_SNP [dm3] 2L_6581256_SNP [dm6]	G	C	1.776e^-4	0.887	INTRON CG11319
2R	5731331	2R_5731331_SNP [dm3] 2R_9843826_SNP [dm6]	T	A	1.789e^-4	0.887	NON_SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	5732741	2R_5732741_SNP [dm3] 2R_9845236_SNP [dm6]	A	T	1.790e^-4	0.887	DOWNSTREAM Orc6 INTRON CG1667
3L	16426564	3L_16426564_SNP [dm3] 3L_16433464_SNP [dm6]	C	T	1.793e^-4	0.887	INTRON CG33158 & 1 other
3R	7303926	3R_7303926_DEL [dm3] 3R_11478204_DEL [dm6]	GCGGGACATCCGAGGCGGCT...	A	1.795e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23901758	3R_23901758_DEL [dm3] 3R_28076036_DEL [dm6]	TCGCCAGAAGCGAGGGAGGG...	T	1.796e^-4	0.887	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17253942	2R_17253942_SNP [dm3] 2R_21366437_SNP [dm6]	T	C	1.801e^-4	0.887	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14000388	2L_14000388_SNP [dm3] 2L_14000388_SNP [dm6]	C	T	1.811e^-4	0.887	INTRON rk
X	16280242	X_16280242_SNP [dm3] X_16386209_SNP [dm6]	A	G	1.811e^-4	0.887	UPSTREAM CG4239 INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	5794890	2R_5794890_SNP [dm3] 2R_9907385_SNP [dm6]	G	A	1.813e^-4	0.887	INTRON FMRFa	TF binding site mE1_TFBS_HSA
2R	9967012	2R_9967012_SNP [dm3] 2R_14079507_SNP [dm6]	A	T	1.813e^-4	0.887	INTRON Prosap
2L	9164460	2L_9164460_SNP [dm3] 2L_9164460_SNP [dm6]	C	A	1.834e^-4	0.887	NON_SYNONYMOUS_CODING CG13108 DOWNSTREAM CG32982 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17286533	X_17286533_SNP [dm3] X_17392500_SNP [dm6]	G	A	1.842e^-4	0.887	INTERGENIC
3R	9325222	3R_9325222_SNP [dm3] 3R_13499500_SNP [dm6]	T	C	1.846e^-4	0.887	INTERGENIC
2L	3361747	2L_3361747_SNP [dm3] 2L_3361747_SNP [dm6]	T	G	1.846e^-4	0.887	INTRON CG34394
3L	2623142	3L_2623142_SNP [dm3] 3L_2623142_SNP [dm6]	A	G	1.849e^-4	0.887	INTRON Pxn
2L	13372497	2L_13372497_SNP [dm3] 2L_13372497_SNP [dm6]	C	T	1.851e^-4	0.887	SYNONYMOUS_CODING CG9305	TF binding site mE1_TFBS_cad
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	1.853e^-4	0.887	INTRON ClC-a
2L	11946009	2L_11946009_SNP [dm3] 2L_11946009_SNP [dm6]	A	T	1.870e^-4	0.887	NON_SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	15074686	3R_15074686_SNP [dm3] 3R_19248964_SNP [dm6]	T	A	1.872e^-4	0.887	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4889577	3L_4889577_SNP [dm3] 3L_4889577_SNP [dm6]	A	T	1.874e^-4	0.887	INTRON CG17150
2L	22680678	2L_22680678_SNP [dm3] 2L_22787946_SNP [dm6]	C	A	1.882e^-4	0.887	INTERGENIC
2L	10794970	2L_10794970_SNP [dm3] 2L_10794970_SNP [dm6]	A	T	1.884e^-4	0.887	INTRON CG31869
2L	22639551	2L_22639551_SNP [dm3] 2L_22746819_SNP [dm6]	C	A	1.893e^-4	0.887	INTRON CG40006
3L	2263487	3L_2263487_SNP [dm3] 3L_2263487_SNP [dm6]	G	A	1.896e^-4	0.887	NON_SYNONYMOUS_CODING CG13807 UPSTREAM oxt DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3761802	2L_3761802_SNP [dm3] 2L_3761802_SNP [dm6]	A	G	1.897e^-4	0.887	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo
2L	12280816	2L_12280816_SNP [dm3] 2L_12280816_SNP [dm6]	A	G	1.898e^-4	0.887	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.899e^-4	0.887	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9492519	2R_9492519_SNP [dm3] 2R_13605014_SNP [dm6]	G	A	1.901e^-4	0.887	INTRON CG34236
3L	2876011	3L_2876011_SNP [dm3] 3L_2876011_SNP [dm6]	C	T	1.916e^-4	0.887	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23866358	3R_23866358_SNP [dm3] 3R_28040636_SNP [dm6]	G	C	1.916e^-4	0.887	INTRON CG34362
2L	10111274	2L_10111274_SNP [dm3] 2L_10111274_SNP [dm6]	A	G	1.925e^-4	0.887	INTRON CG44153 & 1 other
3R	8135936	3R_8135936_SNP [dm3] 3R_12310214_SNP [dm6]	A	T	1.935e^-4	0.887	INTERGENIC
2L	21979881	2L_21979881_SNP [dm3] 2L_21979881_SNP [dm6]	G	A	1.946e^-4	0.887	INTERGENIC
2L	1208886	2L_1208886_SNP [dm3] 2L_1208886_SNP [dm6]	G	C	1.946e^-4	0.887	INTERGENIC
2L	22640622	2L_22640622_DEL [dm3] 2L_22747890_DEL [dm6]	GG	G	1.947e^-4	0.887	INTRON CG40006
3R	26219322	3R_26219322_SNP [dm3] 3R_30393600_SNP [dm6]	T	C	1.960e^-4	0.887	INTERGENIC
2R	16978619	2R_16978619_SNP [dm3] 2R_21091114_SNP [dm6]	A	T	1.963e^-4	0.887	UPSTREAM Rbpn-5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6577634	2R_6577634_SNP [dm3] 2R_10690129_SNP [dm6]	G	C	1.963e^-4	0.887	INTRON stan
3R	13792908	3R_13792908_SNP [dm3] 3R_17967186_SNP [dm6]	G	A	1.965e^-4	0.887	SYNONYMOUS_CODING cpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	1.971e^-4	0.887	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4611779	2L_4611779_SNP [dm3] 2L_4611779_SNP [dm6]	A	T	1.972e^-4	0.887	INTRON dp	TF binding site mE1_TFBS_kn
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.972e^-4	0.887	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19304658	3R_19304658_SNP [dm3] 3R_23478936_SNP [dm6]	A	T	1.976e^-4	0.887	INTERGENIC
3R	8436786	3R_8436786_SNP [dm3] 3R_12611064_SNP [dm6]	G	A	1.984e^-4	0.887	INTERGENIC
2L	2549183	2L_2549183_SNP [dm3] 2L_2549183_SNP [dm6]	C	A	1.988e^-4	0.887	INTERGENIC
X	20009106	X_20009106_SNP [dm3] X_20115073_SNP [dm6]	G	C	1.992e^-4	0.887	INTERGENIC
3L	4891428	3L_4891428_SNP [dm3] 3L_4891428_SNP [dm6]	G	C	1.995e^-4	0.887	SYNONYMOUS_CODING CG17150
3R	11765527	3R_11765527_SNP [dm3] 3R_15939805_SNP [dm6]	T	C	1.995e^-4	0.887	INTRON Sap47
3L	16426568	3L_16426568_SNP [dm3] 3L_16433468_SNP [dm6]	A	G	1.996e^-4	0.887	INTRON CG33158 & 1 other
3L	1977106	3L_1977106_SNP [dm3] 3L_1977106_SNP [dm6]	A	G	1.996e^-4	0.887	INTERGENIC
3L	2263489	3L_2263489_SNP [dm3] 3L_2263489_SNP [dm6]	A	C	1.997e^-4	0.887	NON_SYNONYMOUS_CODING CG13807 UPSTREAM oxt DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	9711950	3R_9711950_SNP [dm3] 3R_13886228_SNP [dm6]	A	T	2.001e^-4	0.887	INTERGENIC
3R	26501249	3R_26501249_SNP [dm3] 3R_30675527_SNP [dm6]	C	A	2.001e^-4	0.887	INTERGENIC
2L	12280834	2L_12280834_SNP [dm3] 2L_12280834_SNP [dm6]	T	A	2.010e^-4	0.887	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	494649	2L_494649_SNP [dm3] 2L_494649_SNP [dm6]	G	T	2.013e^-4	0.887	INTRON ush
3R	10754897	3R_10754897_SNP [dm3] 3R_14929175_SNP [dm6]	T	A	2.014e^-4	0.887	INTERGENIC
2L	6482527	2L_6482527_SNP [dm3] 2L_6482527_SNP [dm6]	C	G	2.021e^-4	0.887	NON_SYNONYMOUS_CODING DLP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12562102	2R_12562102_SNP [dm3] 2R_16674597_SNP [dm6]	T	C	2.027e^-4	0.887	UTR_3_PRIME CG30463
2L	22739521	2L_22739521_SNP [dm3] 2L_22846789_SNP [dm6]	T	A	2.029e^-4	0.887	INTRON CG17715
3L	4889562	3L_4889562_SNP [dm3] 3L_4889562_SNP [dm6]	A	T	2.033e^-4	0.887	INTRON CG17150
3R	19304640	3R_19304640_SNP [dm3] 3R_23478918_SNP [dm6]	C	T	2.043e^-4	0.888	INTERGENIC
3R	10108591	3R_10108591_SNP [dm3] 3R_14282869_SNP [dm6]	G	A	2.046e^-4	0.888	INTRON trx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	17024753	2R_17024753_SNP [dm3] 2R_21137248_SNP [dm6]	C	T	2.051e^-4	0.889	INTRON Magi
3L	1586810	3L_1586810_SNP [dm3] 3L_1586810_SNP [dm6]	G	A	2.058e^-4	0.889	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16522027	3R_16522027_SNP [dm3] 3R_20696305_SNP [dm6]	T	G	2.062e^-4	0.889	INTRON Oamb
X	17578990	X_17578990_SNP [dm3] X_17684957_SNP [dm6]	T	C	2.068e^-4	0.889	INTRON chas
2L	22642265	2L_22642265_SNP [dm3] 2L_22749533_SNP [dm6]	A	G	2.075e^-4	0.889	INTRON CG40006
3L	11072475	3L_11072475_SNP [dm3] 3L_11079375_SNP [dm6]	G	T	2.080e^-4	0.889	UTR_3_PRIME JIL-1 DOWNSTREAM JIL-1 & 1 other
2R	16979409	2R_16979409_SNP [dm3] 2R_21091904_SNP [dm6]	T	C	2.082e^-4	0.889	UPSTREAM Rbpn-5 & 1 other INTERGENIC
3L	6088955	3L_6088955_SNP [dm3] 3L_6095855_SNP [dm6]	A	T	2.088e^-4	0.889	SYNONYMOUS_CODING loj	TF binding site mE1_TFBS_sens
2R	11016133	2R_11016133_SNP [dm3] 2R_15128628_SNP [dm6]	C	T	2.103e^-4	0.889	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	2.106e^-4	0.889	INTRON CG30007
2R	12652436	2R_12652436_SNP [dm3] 2R_16764931_SNP [dm6]	A	T	2.106e^-4	0.889	DOWNSTREAM CG42392 INTRON unc-104	TF binding site mE1_TFBS_Trl
2L	21979659	2L_21979659_SNP [dm3] 2L_21979659_SNP [dm6]	C	A	2.111e^-4	0.889	INTERGENIC
3R	21328921	3R_21328921_SNP [dm3] 3R_25503199_SNP [dm6]	C	T	2.114e^-4	0.889	UPSTREAM CR45651 & 1 other EXON CR43457
2L	22666567	2L_22666567_SNP [dm3] 2L_22773835_SNP [dm6]	T	G	2.119e^-4	0.889	INTERGENIC
2L	19987781	2L_19987781_SNP [dm3] 2L_19987781_SNP [dm6]	A	C	2.120e^-4	0.889	INTRON CG43861
3R	26487792	3R_26487792_SNP [dm3] 3R_30662070_SNP [dm6]	T	G	2.129e^-4	0.891	INTERGENIC
2L	22636755	2L_22636755_SNP [dm3] 2L_22744023_SNP [dm6]	T	C	2.132e^-4	0.891	INTRON CG40006
2L	12280873	2L_12280873_SNP [dm3] 2L_12280873_SNP [dm6]	G	T	2.167e^-4	0.894	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19672642	2R_19672642_SNP [dm3] 2R_23785119_SNP [dm6]	C	T	2.169e^-4	0.894	INTRON CG9850
X	10778142	X_10778142_SNP [dm3] X_10884109_SNP [dm6]	A	G	2.169e^-4	0.894	INTRON Ork1
2L	22639511	2L_22639511_SNP [dm3] 2L_22746779_SNP [dm6]	T	A	2.177e^-4	0.894	INTRON CG40006
2R	15168958	2R_15168958_SNP [dm3] 2R_19281453_SNP [dm6]	C	A	2.191e^-4	0.894	UTR_3_PRIME CG11906 DOWNSTREAM rib
2L	7292185	2L_7292185_SNP [dm3] 2L_7292185_SNP [dm6]	A	G	2.197e^-4	0.894	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13413096	X_13413096_INS [dm3] X_13519063_INS [dm6]	T	TTT	2.197e^-4	0.894	UTR_3_PRIME Neto INTRON Neto
2R	14455944	2R_14455944_INS [dm3] 2R_18568439_INS [dm6]	G	GTCAAGTACCCAGCAC...	2.205e^-4	0.894	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18995670	3R_18995670_SNP [dm3] 3R_23169948_SNP [dm6]	C	A	2.206e^-4	0.894	UTR_5_PRIME Irk1
2R	17609542	2R_17609542_SNP [dm3] 2R_21722037_SNP [dm6]	G	C	2.213e^-4	0.894	NON_SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12280836	2L_12280836_SNP [dm3] 2L_12280836_SNP [dm6]	A	T	2.215e^-4	0.894	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12280872	2L_12280872_SNP [dm3] 2L_12280872_SNP [dm6]	C	T	2.217e^-4	0.894	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22583989	3R_22583989_SNP [dm3] 3R_26758267_SNP [dm6]	A	G	2.218e^-4	0.894	UPSTREAM CR45562 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22704894	2L_22704894_SNP [dm3] 2L_22812162_SNP [dm6]	A	T	2.221e^-4	0.894	INTERGENIC
3L	8312774	3L_8312774_SNP [dm3] 3L_8319674_SNP [dm6]	G	A	2.227e^-4	0.894	UPSTREAM CG43059 INTERGENIC
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	2.227e^-4	0.894	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10809189	X_10809189_INS [dm3] X_10915156_INS [dm6]	T	TCATTT	2.228e^-4	0.894	INTRON CG43901
3R	19304634	3R_19304634_SNP [dm3] 3R_23478912_SNP [dm6]	T	A	2.234e^-4	0.894	INTERGENIC
3L	15566925	3L_15566925_SNP [dm3] 3L_15573825_SNP [dm6]	G	A	2.244e^-4	0.894	SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12982242	2L_12982242_SNP [dm3] 2L_12982242_SNP [dm6]	T	G	2.248e^-4	0.894	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2249756	2L_2249756_SNP [dm3] 2L_2249756_SNP [dm6]	C	T	2.253e^-4	0.894	DOWNSTREAM Ser12 INTERGENIC
2R	6539422	2R_6539422_SNP [dm3] 2R_10651917_SNP [dm6]	A	C	2.255e^-4	0.894	INTERGENIC
2R	12175448	2R_12175448_SNP [dm3] 2R_16287943_SNP [dm6]	C	T	2.260e^-4	0.894	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
2L	17742003	2L_17742003_SNP [dm3] 2L_17742003_SNP [dm6]	G	T	2.270e^-4	0.894	INTRON CadN
X	14222910	X_14222910_SNP [dm3] X_14328877_SNP [dm6]	G	T	2.275e^-4	0.894	INTRON dpr8
3R	24257843	3R_24257843_SNP [dm3] 3R_28432121_SNP [dm6]	C	G	2.278e^-4	0.894	INTRON beat-VI
3R	21835658	3R_21835658_SNP [dm3] 3R_26009936_SNP [dm6]	G	A	2.282e^-4	0.894	UPSTREAM E_spl_malpha-BFM INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	12600555	2R_12600555_SNP [dm3] 2R_16713050_SNP [dm6]	A	G	2.293e^-4	0.894	INTRON CG30463
2R	16465556	2R_16465556_SNP [dm3] 2R_20578051_SNP [dm6]	A	G	2.304e^-4	0.894	INTRON qsm
3L	7303982	3L_7303982_SNP [dm3] 3L_7310882_SNP [dm6]	T	C	2.306e^-4	0.894	INTRON unc-13-4A
2R	12027055	2R_12027055_SNP [dm3] 2R_16139550_SNP [dm6]	G	A	2.311e^-4	0.894	INTRON Got1
2R	5730387	2R_5730387_SNP [dm3] 2R_9842882_SNP [dm6]	G	A	2.317e^-4	0.894	UPSTREAM Vamp7 & 1 other INTRON CG1667	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26477552	3R_26477552_SNP [dm3] 3R_30651830_SNP [dm6]	C	T	2.323e^-4	0.894	DOWNSTREAM CG34433 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16191611	3R_16191611_SNP [dm3] 3R_20365889_SNP [dm6]	C	A	2.328e^-4	0.894	INTERGENIC
3R	23842015	3R_23842015_SNP [dm3] 3R_28016293_SNP [dm6]	C	T	2.334e^-4	0.894	INTERGENIC
2L	3271272	2L_3271272_SNP [dm3] 2L_3271272_SNP [dm6]	G	A	2.340e^-4	0.894	SYNONYMOUS_CODING CG3347
2L	4690895	2L_4690895_SNP [dm3] 2L_4690895_SNP [dm6]	A	G	2.342e^-4	0.894	UPSTREAM CG3251 INTERGENIC
2L	22628738	2L_22628738_SNP [dm3] 2L_22736006_SNP [dm6]	T	G	2.346e^-4	0.894	INTRON CG40006
2L	7652935	2L_7652935_SNP [dm3] 2L_7652935_SNP [dm6]	G	A	2.355e^-4	0.894	INTRON Slob
X	18696579	X_18696579_SNP [dm3] X_18802546_SNP [dm6]	A	T	2.356e^-4	0.894	INTRON Pk17E	TF binding site mE1_TFBS_sens
3L	4891423	3L_4891423_SNP [dm3] 3L_4891423_SNP [dm6]	T	C	2.358e^-4	0.894	SYNONYMOUS_CODING CG17150
X	18696575	X_18696575_SNP [dm3] X_18802542_SNP [dm6]	T	A	2.361e^-4	0.894	INTRON Pk17E	TF binding site mE1_TFBS_sens
X	10059699	X_10059699_SNP [dm3] X_10165666_SNP [dm6]	G	C	2.362e^-4	0.894	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	776171	2L_776171_SNP [dm3] 2L_776171_SNP [dm6]	C	T	2.363e^-4	0.894	UPSTREAM CG13946 INTERGENIC
2L	14459211	2L_14459211_SNP [dm3] 2L_14459211_SNP [dm6]	T	G	2.364e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	14501574	3R_14501574_SNP [dm3] 3R_18675852_SNP [dm6]	C	A	2.371e^-4	0.894	SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705	TF binding site mE1_TFBS_cad
3L	4889547	3L_4889547_SNP [dm3] 3L_4889547_SNP [dm6]	A	T	2.374e^-4	0.894	SPLICE_SITE_REGION CG17150 INTRON CG17150
3R	14383311	3R_14383311_SNP [dm3] 3R_18557589_SNP [dm6]	T	C	2.374e^-4	0.894	INTERGENIC
X	12590662	X_12590662_SNP [dm3] X_12696629_SNP [dm6]	A	T	2.388e^-4	0.894	INTRON Smr	TF binding site BDTNP1_TFBS_dl
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	2.394e^-4	0.894	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22619473	2L_22619473_SNP [dm3] 2L_22726741_SNP [dm6]	G	T	2.397e^-4	0.894	INTRON CG40006	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	22322762	2L_22322762_SNP [dm3] 2L_22322762_SNP [dm6]	G	T	2.404e^-4	0.894	INTRON CG17018
3L	843549	3L_843549_SNP [dm3] 3L_843549_SNP [dm6]	T	G	2.413e^-4	0.894	UTR_3_PRIME Gr61a UPSTREAM CG13889 DOWNSTREAM Gr61a
2L	6099425	2L_6099425_DEL [dm3] 2L_6099425_DEL [dm6]	AA	A	2.413e^-4	0.894	UPSTREAM CG9175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3112311	3L_3112311_SNP [dm3] 3L_3112311_SNP [dm6]	T	C	2.415e^-4	0.894	SYNONYMOUS_CODING CG45067
X	19650126	X_19650126_SNP [dm3] X_19756093_SNP [dm6]	C	G	2.419e^-4	0.894	INTRON Pmp70
3R	14458095	3R_14458095_SNP [dm3] 3R_18632373_SNP [dm6]	T	C	2.424e^-4	0.894	INTRON qin & 1 other
2L	17741991	2L_17741991_SNP [dm3] 2L_17741991_SNP [dm6]	T	C	2.426e^-4	0.894	INTRON CadN
2L	1999139	2L_1999139_SNP [dm3] 2L_1999139_SNP [dm6]	C	G	2.431e^-4	0.894	UPSTREAM CR43464 INTRON CG33543
3R	10960865	3R_10960865_SNP [dm3] 3R_15135143_SNP [dm6]	A	G	2.439e^-4	0.894	UTR_3_PRIME CG6912	TF binding site BDTNP1_TFBS_dl
2L	22626162	2L_22626162_SNP [dm3] 2L_22733430_SNP [dm6]	A	G	2.441e^-4	0.894	INTRON CG40006
3R	8491445	3R_8491445_SNP [dm3] 3R_12665723_SNP [dm6]	G	T	2.442e^-4	0.894	INTRON CG14395
3R	26683803	3R_26683803_SNP [dm3] 3R_30858081_SNP [dm6]	C	G	2.444e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_sens
2R	20189780	2R_20189780_SNP [dm3] 2R_24302257_SNP [dm6]	A	G	2.448e^-4	0.894	INTERGENIC
3R	8135958	3R_8135958_SNP [dm3] 3R_12310236_SNP [dm6]	C	A	2.450e^-4	0.894	INTERGENIC
2R	11805549	2R_11805549_INS [dm3] 2R_15918044_INS [dm6]	A	AA	2.457e^-4	0.895	INTRON sli	TF binding site mE1_TFBS_cad
3L	15157123	3L_15157123_INS [dm3] 3L_15164023_INS [dm6]	T	TT	2.473e^-4	0.896	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	2.474e^-4	0.896	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8202459	3R_8202459_SNP [dm3] 3R_12376737_SNP [dm6]	T	G	2.479e^-4	0.896	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3L	13177946	3L_13177946_SNP [dm3] 3L_13184846_SNP [dm6]	G	C	2.481e^-4	0.896	INTERGENIC
X	20238879	X_20238879_SNP [dm3] X_20367852_SNP [dm6]	A	C	2.485e^-4	0.896	INTERGENIC
2R	15176117	2R_15176117_SNP [dm3] 2R_19288612_SNP [dm6]	G	A	2.488e^-4	0.896	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
2L	22061965	2L_22061965_SNP [dm3] 2L_22061965_SNP [dm6]	G	T	2.521e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
X	14230054	X_14230054_SNP [dm3] X_14336021_SNP [dm6]	A	T	2.524e^-4	0.904	INTRON dpr8
X	8831382	X_8831382_SNP [dm3] X_8937349_SNP [dm6]	G	C	2.535e^-4	0.904	INTRON rdgA
2R	5474851	2R_5474851_SNP [dm3] 2R_9587346_SNP [dm6]	C	A	2.538e^-4	0.904	UPSTREAM CG12929 DOWNSTREAM clos INTRON RpL31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	1626848	2L_1626848_SNP [dm3] 2L_1626848_SNP [dm6]	A	G	2.538e^-4	0.904	UPSTREAM CR44603 INTERGENIC
2R	12562093	2R_12562093_SNP [dm3] 2R_16674588_SNP [dm6]	C	T	2.541e^-4	0.904	UTR_3_PRIME CG30463
X	21174508	X_21174508_SNP [dm3] X_21303481_SNP [dm6]	G	A	2.557e^-4	0.905	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
X	10609926	X_10609926_INS [dm3] X_10715893_INS [dm6]	A	AGCA	2.558e^-4	0.905	CODON_INSERTION CG32676	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4396745	2R_4396745_SNP [dm3] 2R_8509240_SNP [dm6]	C	T	2.578e^-4	0.905	INTRON mtt
2L	8540528	2L_8540528_SNP [dm3] 2L_8540528_SNP [dm6]	C	T	2.579e^-4	0.905	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	15204976	2L_15204976_SNP [dm3] 2L_15204976_SNP [dm6]	C	G	2.580e^-4	0.905	INTERGENIC
2L	14000393	2L_14000393_SNP [dm3] 2L_14000393_SNP [dm6]	T	C	2.588e^-4	0.905	INTRON rk
2R	19672644	2R_19672644_SNP [dm3] 2R_23785121_SNP [dm6]	A	G	2.593e^-4	0.905	INTRON CG9850
3R	8428228	3R_8428228_SNP [dm3] 3R_12602506_SNP [dm6]	C	T	2.600e^-4	0.905	INTERGENIC
2R	5731484	2R_5731484_SNP [dm3] 2R_9843979_SNP [dm6]	A	G	2.600e^-4	0.905	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	1969360	2L_1969360_SNP [dm3] 2L_1969360_SNP [dm6]	C	T	2.604e^-4	0.905	INTRON erm	TF binding site BDTNP1_TFBS_dl
2R	20210093	2R_20210093_SNP [dm3] 2R_24322570_SNP [dm6]	A	T	2.608e^-4	0.905	INTERGENIC
X	19560010	X_19560010_SNP [dm3] X_19665977_SNP [dm6]	C	T	2.621e^-4	0.905	UTR_3_PRIME Ssu72	TF binding site mE1_TFBS_Trl
3L	843462	3L_843462_SNP [dm3] 3L_843462_SNP [dm6]	A	G	2.628e^-4	0.905	UTR_3_PRIME Gr61a UPSTREAM CG13889
3R	9818401	3R_9818401_SNP [dm3] 3R_13992679_SNP [dm6]	G	A	2.632e^-4	0.905	INTRON rdx
2L	15246501	2L_15246501_SNP [dm3] 2L_15246501_SNP [dm6]	A	T	2.644e^-4	0.905	UPSTREAM ZnT35C INTRON ZnT35C
3R	8509013	3R_8509013_SNP [dm3] 3R_12683291_SNP [dm6]	G	A	2.653e^-4	0.905	INTRON kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10546045	2L_10546045_SNP [dm3] 2L_10546045_SNP [dm6]	C	T	2.657e^-4	0.905	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1563474	3L_1563474_SNP [dm3] 3L_1563474_SNP [dm6]	C	A	2.658e^-4	0.905	INTRON CG7879
2L	3534069	2L_3534069_SNP [dm3] 2L_3534069_SNP [dm6]	T	A	2.660e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	2.664e^-4	0.905	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3L	3326127	3L_3326127_SNP [dm3] 3L_3326127_SNP [dm6]	C	T	2.667e^-4	0.905	UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27187825	3R_27187825_SNP [dm3] 3R_31362103_SNP [dm6]	C	T	2.671e^-4	0.905	SYNONYMOUS_CODING CG34347	TF binding site mE1_TFBS_chinmo
3L	14848850	3L_14848850_DEL [dm3] 3L_14855750_DEL [dm6]	GTG	G	2.675e^-4	0.905	INTRON CG17839
3R	23901637	3R_23901637_SNP [dm3] 3R_28075915_SNP [dm6]	C	G	2.691e^-4	0.905	INTRON CG34362	TF binding site mE1_TFBS_inv
3L	15172025	3L_15172025_SNP [dm3] 3L_15178925_SNP [dm6]	C	T	2.696e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9486612	2L_9486612_SNP [dm3] 2L_9486612_SNP [dm6]	C	G	2.712e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15385295	2R_15385295_SNP [dm3] 2R_19497790_SNP [dm6]	C	A	2.716e^-4	0.905	UTR_5_PRIME CG15120 UPSTREAM hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20403318	3L_20403318_SNP [dm3] 3L_20410218_SNP [dm6]	T	G	2.717e^-4	0.905	INTRON CG13248
2L	3275575	2L_3275575_SNP [dm3] 2L_3275575_SNP [dm6]	G	A	2.717e^-4	0.905	DOWNSTREAM CG3332 INTERGENIC
2R	12566432	2R_12566432_SNP [dm3] 2R_16678927_SNP [dm6]	T	G	2.721e^-4	0.905	INTRON CG30463
3R	10877622	3R_10877622_SNP [dm3] 3R_15051900_SNP [dm6]	C	T	2.721e^-4	0.905	INTERGENIC
3R	24497819	3R_24497819_SNP [dm3] 3R_28672097_SNP [dm6]	A	T	2.722e^-4	0.905	DOWNSTREAM CG9989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	21171127	X_21171127_SNP [dm3] X_21300100_SNP [dm6]	A	G	2.733e^-4	0.905	INTRON CG1718
3R	25202427	3R_25202427_SNP [dm3] 3R_29376705_SNP [dm6]	G	A	2.739e^-4	0.905	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5904997	2L_5904997_SNP [dm3] 2L_5904997_SNP [dm6]	C	T	2.741e^-4	0.905	UPSTREAM CG9021 EXON CR43808
2R	15385321	2R_15385321_SNP [dm3] 2R_19497816_SNP [dm6]	A	G	2.744e^-4	0.905	SYNONYMOUS_CODING CG15120 UPSTREAM hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15473923	3R_15473923_SNP [dm3] 3R_19648201_SNP [dm6]	G	T	2.748e^-4	0.905	UPSTREAM CG31220 INTRON CG6195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	22621860	2L_22621860_SNP [dm3] 2L_22729128_SNP [dm6]	A	T	2.749e^-4	0.905	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5706234	2R_5706234_SNP [dm3] 2R_9818729_SNP [dm6]	A	C	2.766e^-4	0.905	DOWNSTREAM lectin-46Ca INTRON CG1648
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	2.773e^-4	0.905	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	22621904	2L_22621904_SNP [dm3] 2L_22729172_SNP [dm6]	G	T	2.776e^-4	0.905	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17215979	3R_17215979_SNP [dm3] 3R_21390257_SNP [dm6]	T	C	2.777e^-4	0.905	SYNONYMOUS_CODING bap	TF binding site mE1_TFBS_cad
2R	9183052	2R_9183052_SNP [dm3] 2R_13295547_SNP [dm6]	C	A	2.779e^-4	0.905	UTR_5_PRIME Dh31-R
2R	16181390	2R_16181390_SNP [dm3] 2R_20293885_SNP [dm6]	C	G	2.780e^-4	0.905	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
3R	16035674	3R_16035674_SNP [dm3] 3R_20209952_SNP [dm6]	T	G	2.790e^-4	0.905	UPSTREAM CG17199 INTRON Nlg4
2L	9679127	2L_9679127_SNP [dm3] 2L_9679127_SNP [dm6]	T	G	2.799e^-4	0.905	INTERGENIC
3L	4891435	3L_4891435_SNP [dm3] 3L_4891435_SNP [dm6]	C	T	2.803e^-4	0.905	SYNONYMOUS_CODING CG17150
2L	22709866	2L_22709866_SNP [dm3] 2L_22817134_SNP [dm6]	A	T	2.814e^-4	0.905	INTERGENIC
2L	13939719	2L_13939719_SNP [dm3] 2L_13939719_SNP [dm6]	G	A	2.814e^-4	0.905	INTRON Ance-3
2L	14000378	2L_14000378_SNP [dm3] 2L_14000378_SNP [dm6]	A	G	2.822e^-4	0.905	INTRON rk
3L	16154537	3L_16154537_SNP [dm3] 3L_16161437_SNP [dm6]	C	T	2.827e^-4	0.905	INTRON CG5151	TF binding site mE1_TFBS_HSA
2L	664447	2L_664447_SNP [dm3] 2L_664447_SNP [dm6]	T	A	2.830e^-4	0.905	INTRON ds
3L	1563470	3L_1563470_SNP [dm3] 3L_1563470_SNP [dm6]	G	C	2.831e^-4	0.905	INTRON CG7879
3L	15167791	3L_15167791_SNP [dm3] 3L_15174691_SNP [dm6]	G	T	2.831e^-4	0.905	INTERGENIC
3L	16154761	3L_16154761_SNP [dm3] 3L_16161661_SNP [dm6]	A	G	2.832e^-4	0.905	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5080648	2L_5080648_SNP [dm3] 2L_5080648_SNP [dm6]	G	T	2.855e^-4	0.905	INTRON pgant5
2R	9589107	2R_9589107_SNP [dm3] 2R_13701602_SNP [dm6]	A	G	2.860e^-4	0.905	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8315870	2L_8315870_SNP [dm3] 2L_8315870_SNP [dm6]	A	G	2.867e^-4	0.905	SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_sens
2R	6557314	2R_6557314_SNP [dm3] 2R_10669809_SNP [dm6]	C	T	2.867e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16088629	3R_16088629_SNP [dm3] 3R_20262907_SNP [dm6]	G	T	2.870e^-4	0.905	INTRON cic	TF binding site mE1_TFBS_cad
X	21498423	X_21498423_SNP [dm3] X_21627396_SNP [dm6]	G	A	2.876e^-4	0.905	INTRON DIP1	transposable element FlyBase
3R	15875761	3R_15875761_SNP [dm3] 3R_20050039_SNP [dm6]	A	G	2.884e^-4	0.905	INTRON CG17193
2L	4899472	2L_4899472_SNP [dm3] 2L_4899472_SNP [dm6]	G	T	2.896e^-4	0.905	INTRON CG3036
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	2.898e^-4	0.905	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
2R	4114436	2R_4114436_DEL [dm3] 2R_8226931_DEL [dm6]	GG	G	2.898e^-4	0.905	DOWNSTREAM LRP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19086308	2R_19086308_SNP [dm3] 2R_23198785_SNP [dm6]	A	T	2.903e^-4	0.905	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19293458	X_19293458_SNP [dm3] X_19399425_SNP [dm6]	G	A	2.917e^-4	0.905	INTRON kek5
2L	22640253	2L_22640253_INS [dm3] 2L_22747521_INS [dm6]	G	TGTCCAA	2.919e^-4	0.905	INTRON CG40006
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	2.919e^-4	0.905	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25202598	3R_25202598_DEL [dm3] 3R_29376876_DEL [dm6]	GTTCAAATAACTG...	G	2.921e^-4	0.905	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7376511	3R_7376511_SNP [dm3] 3R_11550789_SNP [dm6]	C	T	2.922e^-4	0.905	INTERGENIC
X	16802227	X_16802227_SNP [dm3] X_16908194_SNP [dm6]	A	T	2.924e^-4	0.905	INTRON CR44754
2L	2234395	2L_2234395_SNP [dm3] 2L_2234395_SNP [dm6]	C	G	2.931e^-4	0.905	INTRON Sec24CD
2L	4239663	2L_4239663_SNP [dm3] 2L_4239663_SNP [dm6]	C	G	2.959e^-4	0.905	DOWNSTREAM CR45720 INTERGENIC
2L	9169324	2L_9169324_SNP [dm3] 2L_9169324_SNP [dm6]	C	G	2.960e^-4	0.905	INTRON tai
2L	17395670	2L_17395670_SNP [dm3] 2L_17395670_SNP [dm6]	T	A	2.961e^-4	0.905	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
2R	5922338	2R_5922338_SNP [dm3] 2R_10034833_SNP [dm6]	G	C	2.961e^-4	0.905	UTR_3_PRIME oys DOWNSTREAM oys & 1 other
3L	5669740	3L_5669740_SNP [dm3] 3L_5676640_SNP [dm6]	G	A	2.968e^-4	0.905	SYNONYMOUS_CODING sif
3R	9722512	3R_9722512_SNP [dm3] 3R_13896790_SNP [dm6]	T	G	2.983e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19650057	X_19650057_SNP [dm3] X_19756024_SNP [dm6]	T	C	2.986e^-4	0.905	INTRON Pmp70
2L	1410782	2L_1410782_SNP [dm3] 2L_1410782_SNP [dm6]	A	T	2.988e^-4	0.905	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13302174	3R_13302174_SNP [dm3] 3R_17476452_SNP [dm6]	T	C	2.989e^-4	0.905	SPLICE_SITE_REGION Dscam3 INTRON Dscam3
2L	22640004	2L_22640004_SNP [dm3] 2L_22747272_SNP [dm6]	T	C	2.990e^-4	0.905	INTRON CG40006
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	2.996e^-4	0.905	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	15157062	3L_15157062_SNP [dm3] 3L_15163962_SNP [dm6]	G	A	3.000e^-4	0.905	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	2954177	3L_2954177_SNP [dm3] 3L_2954177_SNP [dm6]	T	A	3.006e^-4	0.905	DOWNSTREAM Shab INTRON Shab
2R	14077927	2R_14077927_SNP [dm3] 2R_18190422_SNP [dm6]	T	C	3.009e^-4	0.905	DOWNSTREAM CG14500 INTRON CG33958
2R	13552019	2R_13552019_SNP [dm3] 2R_17664514_SNP [dm6]	A	G	3.013e^-4	0.905	INTRON CCHa1-R
3R	13307699	3R_13307699_SNP [dm3] 3R_17481977_SNP [dm6]	C	G	3.015e^-4	0.905	SYNONYMOUS_CODING Dscam3 DOWNSTREAM Dscam3
3L	19358322	3L_19358322_DEL [dm3] 3L_19365222_DEL [dm6]	AACAAGAAA	A	3.017e^-4	0.905	INTRON CG32206
2R	9967042	2R_9967042_SNP [dm3] 2R_14079537_SNP [dm6]	C	T	3.021e^-4	0.905	INTRON Prosap
3R	19303864	3R_19303864_INS [dm3] 3R_23478142_INS [dm6]	C	ATTGATAT	3.032e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13965663	2L_13965663_SNP [dm3] 2L_13965663_SNP [dm6]	G	A	3.032e^-4	0.905	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12718074	2L_12718074_SNP [dm3] 2L_12718074_SNP [dm6]	C	G	3.040e^-4	0.905	UPSTREAM MRP INTRON CG5792
2L	4648712	2L_4648712_SNP [dm3] 2L_4648712_SNP [dm6]	T	A	3.041e^-4	0.905	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4648720	2L_4648720_SNP [dm3] 2L_4648720_SNP [dm6]	G	A	3.041e^-4	0.905	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1999127	2L_1999127_SNP [dm3] 2L_1999127_SNP [dm6]	G	C	3.043e^-4	0.905	UPSTREAM CR43464 INTRON CG33543
2L	11480205	2L_11480205_SNP [dm3] 2L_11480205_SNP [dm6]	T	G	3.045e^-4	0.905	INTERGENIC
2R	9312354	2R_9312354_SNP [dm3] 2R_13424849_SNP [dm6]	C	T	3.046e^-4	0.905	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	22621861	2L_22621861_SNP [dm3] 2L_22729129_SNP [dm6]	C	T	3.050e^-4	0.905	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26779403	3R_26779403_SNP [dm3] 3R_30953681_SNP [dm6]	G	A	3.056e^-4	0.905	INTERGENIC
2R	10687943	2R_10687943_INS [dm3] 2R_14800438_INS [dm6]	C	CC	3.058e^-4	0.905	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	17201685	3R_17201685_SNP [dm3] 3R_21375963_SNP [dm6]	A	C	3.058e^-4	0.905	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20210916	2R_20210916_SNP [dm3] 2R_24323393_SNP [dm6]	G	T	3.060e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20211883	2R_20211883_SNP [dm3] 2R_24324360_SNP [dm6]	A	G	3.060e^-4	0.905	UPSTREAM CR44810 INTERGENIC
3R	8212894	3R_8212894_SNP [dm3] 3R_12387172_SNP [dm6]	A	C	3.065e^-4	0.905	UPSTREAM CG33098 INTRON CG34402
X	19572232	X_19572232_SNP [dm3] X_19678199_SNP [dm6]	C	G	3.074e^-4	0.905	INTRON dome	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17286586	X_17286586_SNP [dm3] X_17392553_SNP [dm6]	A	G	3.086e^-4	0.905	INTERGENIC
3R	19304648	3R_19304648_SNP [dm3] 3R_23478926_SNP [dm6]	G	A	3.092e^-4	0.905	INTERGENIC
3R	10754714	3R_10754714_SNP [dm3] 3R_14928992_SNP [dm6]	T	A	3.094e^-4	0.905	INTERGENIC
X	17436299	X_17436299_SNP [dm3] X_17542266_SNP [dm6]	C	T	3.103e^-4	0.905	INTRON CG43658
3R	13179492	3R_13179492_SNP [dm3] 3R_17353770_SNP [dm6]	G	C	3.116e^-4	0.905	INTRON beat-IIa
2L	22334737	2L_22334737_SNP [dm3] 2L_22334737_SNP [dm6]	G	T	3.117e^-4	0.905	INTRON CG17018	transposable element FlyBase
3L	2749835	3L_2749835_SNP [dm3] 3L_2749835_SNP [dm6]	G	A	3.120e^-4	0.905	INTRON Mrtf
3R	26606669	3R_26606669_SNP [dm3] 3R_30780947_SNP [dm6]	A	C	3.123e^-4	0.905	DOWNSTREAM CR45189 INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	22596050	2L_22596050_SNP [dm3] 2L_22703318_SNP [dm6]	A	G	3.137e^-4	0.905	INTRON CG40006
2L	22555998	2L_22555998_INS [dm3] 2L_22663266_INS [dm6]	T	TTAAATT	3.145e^-4	0.905	INTRON CG40006
2R	20210067	2R_20210067_INS [dm3] 2R_24322544_INS [dm6]	T	TGAGT	3.147e^-4	0.905	INTERGENIC
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	3.148e^-4	0.905	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	20306939	3R_20306939_SNP [dm3] 3R_24481217_SNP [dm6]	A	T	3.159e^-4	0.905	INTERGENIC
2R	6956182	2R_6956182_SNP [dm3] 2R_11068677_SNP [dm6]	A	G	3.166e^-4	0.905	INTRON luna
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	3.172e^-4	0.905	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22599226	2L_22599226_SNP [dm3] 2L_22706494_SNP [dm6]	C	A	3.173e^-4	0.905	INTRON CG40006
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	3.177e^-4	0.905	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
3R	7633242	3R_7633242_SNP [dm3] 3R_11807520_SNP [dm6]	A	G	3.181e^-4	0.905	UPSTREAM ClC-a INTRON ClC-a
3L	11326397	3L_11326397_SNP [dm3] 3L_11333297_SNP [dm6]	A	G	3.183e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8254800	X_8254800_SNP [dm3] X_8360767_SNP [dm6]	G	T	3.184e^-4	0.905	INTRON nAChRalpha3
3L	22351195	3L_22351195_DEL [dm3] 3L_22358095_DEL [dm6]	CAATCCTC	A	3.187e^-4	0.905	INTRON Ten-m	TF binding site mE1_TFBS_sens
2R	5731932	2R_5731932_SNP [dm3] 2R_9844427_SNP [dm6]	T	C	3.200e^-4	0.905	INTRON CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	20210915	2R_20210915_SNP [dm3] 2R_24323392_SNP [dm6]	G	T	3.203e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9526172	3L_9526172_DEL [dm3] 3L_9533072_DEL [dm6]	TTGT	T	3.204e^-4	0.905	INTERGENIC
2L	22101088	2L_22101088_SNP [dm3] 2L_22101088_SNP [dm6]	A	T	3.210e^-4	0.905	INTERGENIC
3R	20375000	3R_20375000_SNP [dm3] 3R_24549278_SNP [dm6]	T	C	3.213e^-4	0.905	INTRON Esyt2	TF binding site BDTNP1_TFBS_z
3L	16156963	3L_16156963_SNP [dm3] 3L_16163863_SNP [dm6]	T	C	3.215e^-4	0.905	UTR_5_PRIME CG5151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	21952413	2L_21952413_SNP [dm3] 2L_21952413_SNP [dm6]	T	C	3.216e^-4	0.905	INTERGENIC
2L	22063027	2L_22063027_SNP [dm3] 2L_22063027_SNP [dm6]	C	T	3.218e^-4	0.905	INTERGENIC
2R	19672715	2R_19672715_SNP [dm3] 2R_23785192_SNP [dm6]	A	T	3.221e^-4	0.905	INTRON CG9850
3R	17215490	3R_17215490_SNP [dm3] 3R_21389768_SNP [dm6]	C	T	3.223e^-4	0.905	SYNONYMOUS_CODING bap	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20185533	2R_20185533_SNP [dm3] 2R_24298010_SNP [dm6]	C	T	3.225e^-4	0.905	UTR_3_PRIME CG3394	TF binding site mE1_TFBS_chinmo
2R	19903110	2R_19903110_SNP [dm3] 2R_24015587_SNP [dm6]	G	A	3.225e^-4	0.905	SYNONYMOUS_CODING CG4324	TF binding site mE1_TFBS_chinmo
3L	843411	3L_843411_SNP [dm3] 3L_843411_SNP [dm6]	A	G	3.235e^-4	0.905	SYNONYMOUS_STOP Gr61a UTR_3_PRIME Gr61a UPSTREAM CG13889
3L	16830708	3L_16830708_INS [dm3] 3L_16837608_INS [dm6]	T	TT	3.236e^-4	0.905	INTERGENIC
X	2141928	X_2141928_SNP [dm3] X_2247895_SNP [dm6]	T	C	3.249e^-4	0.905	SYNONYMOUS_CODING crn DOWNSTREAM Or2a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3995285	3L_3995285_SNP [dm3] 3L_3995285_SNP [dm6]	G	A	3.250e^-4	0.905	INTERGENIC
3L	15572385	3L_15572385_SNP [dm3] 3L_15579285_SNP [dm6]	G	A	3.251e^-4	0.905	SYNONYMOUS_CODING mrn DOWNSTREAM CG16979	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22626074	2L_22626074_SNP [dm3] 2L_22733342_SNP [dm6]	G	A	3.255e^-4	0.905	INTRON CG40006
X	18696592	X_18696592_SNP [dm3] X_18802559_SNP [dm6]	T	G	3.256e^-4	0.905	INTRON Pk17E	TF binding site mE1_TFBS_sens
2L	5264339	2L_5264339_SNP [dm3] 2L_5264339_SNP [dm6]	G	A	3.256e^-4	0.905	SYNONYMOUS_CODING Cyp4ac1 INTRON tkv
X	17286598	X_17286598_DEL [dm3] X_17392565_DEL [dm6]	ATTATA	T	3.267e^-4	0.905	INTERGENIC
3R	8438793	3R_8438793_SNP [dm3] 3R_12613071_SNP [dm6]	C	A	3.268e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
X	20478031	X_20478031_SNP [dm3] X_20607004_SNP [dm6]	T	C	3.282e^-4	0.905	INTRON RunxA
2L	664443	2L_664443_INS [dm3] 2L_664443_INS [dm6]	A	AA	3.285e^-4	0.905	INTRON ds
3R	8438792	3R_8438792_SNP [dm3] 3R_12613070_SNP [dm6]	T	C	3.296e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2576036	3L_2576036_SNP [dm3] 3L_2576036_SNP [dm6]	A	C	3.301e^-4	0.905	INTRON msn
2L	3402468	2L_3402468_SNP [dm3] 2L_3402468_SNP [dm6]	T	C	3.308e^-4	0.905	INTERGENIC
3R	27174117	3R_27174117_SNP [dm3] 3R_31348395_SNP [dm6]	G	A	3.310e^-4	0.905	INTRON CG34347	regulatory region REDfly_CRMs
X	21178059	X_21178059_SNP [dm3] X_21307032_SNP [dm6]	A	G	3.320e^-4	0.905	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10259309	3R_10259309_SNP [dm3] 3R_14433587_SNP [dm6]	G	C	3.321e^-4	0.905	INTRON cv-c	TF binding site mE1_TFBS_chinmo
3R	10259847	3R_10259847_SNP [dm3] 3R_14434125_SNP [dm6]	G	A	3.332e^-4	0.905	INTRON cv-c
3L	8879109	3L_8879109_SNP [dm3] 3L_8886009_SNP [dm6]	T	C	3.346e^-4	0.905	INTRON dally
2L	22539258	2L_22539258_SNP [dm3] 2L_22646526_SNP [dm6]	T	G	3.348e^-4	0.905	INTRON CG40006
2L	22610324	2L_22610324_SNP [dm3] 2L_22717592_SNP [dm6]	T	A	3.349e^-4	0.905	INTRON CG40006
2L	4690912	2L_4690912_SNP [dm3] 2L_4690912_SNP [dm6]	A	T	3.359e^-4	0.905	UPSTREAM CG3251 INTERGENIC
2R	5871653	2R_5871653_SNP [dm3] 2R_9984148_SNP [dm6]	C	T	3.372e^-4	0.905	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14208953	3L_14208953_SNP [dm3] 3L_14215853_SNP [dm6]	G	T	3.372e^-4	0.905	INTRON nuf
2R	3921266	2R_3921266_SNP [dm3] 2R_8033761_SNP [dm6]	A	G	3.374e^-4	0.905	INTRON Optix
2R	14587724	2R_14587724_SNP [dm3] 2R_18700219_SNP [dm6]	C	A	3.376e^-4	0.905	NON_SYNONYMOUS_CODING Sik3
2R	4177311	2R_4177311_SNP [dm3] 2R_8289806_SNP [dm6]	C	A	3.376e^-4	0.905	INTERGENIC
3R	8504738	3R_8504738_SNP [dm3] 3R_12679016_SNP [dm6]	T	C	3.382e^-4	0.905	UTR_5_PRIME mbo DOWNSTREAM Cyp313a4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	678175	3L_678175_SNP [dm3] 3L_678175_SNP [dm6]	C	T	3.385e^-4	0.905	NON_SYNONYMOUS_CODING CG17129
3R	15286371	3R_15286371_SNP [dm3] 3R_19460649_SNP [dm6]	G	C	3.390e^-4	0.905	UPSTREAM Dys DOWNSTREAM CG31221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9182915	2R_9182915_SNP [dm3] 2R_13295410_SNP [dm6]	C	T	3.406e^-4	0.905	UTR_5_PRIME Dh31-R
3R	23056019	3R_23056019_SNP [dm3] 3R_27230297_SNP [dm6]	C	T	3.407e^-4	0.905	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9485708	2L_9485708_DEL [dm3] 2L_9485708_DEL [dm6]	GAC	G	3.410e^-4	0.905	INTERGENIC
3R	26217918	3R_26217918_SNP [dm3] 3R_30392196_SNP [dm6]	G	A	3.414e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19304727	3R_19304727_SNP [dm3] 3R_23479005_SNP [dm6]	A	C	3.421e^-4	0.905	INTERGENIC
3R	6539368	3R_6539368_SNP [dm3] 3R_10713646_SNP [dm6]	A	T	3.421e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9818389	3R_9818389_SNP [dm3] 3R_13992667_SNP [dm6]	A	G	3.424e^-4	0.905	INTRON rdx	TF binding site mE1_TFBS_inv
3L	15157060	3L_15157060_SNP [dm3] 3L_15163960_SNP [dm6]	A	G	3.426e^-4	0.905	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	14222689	2R_14222689_SNP [dm3] 2R_18335184_SNP [dm6]	C	T	3.428e^-4	0.905	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5461890	3R_5461890_SNP [dm3] 3R_9636168_SNP [dm6]	T	C	3.429e^-4	0.905	SYNONYMOUS_CODING Scm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13307747	3R_13307747_SNP [dm3] 3R_17482025_SNP [dm6]	A	T	3.432e^-4	0.905	DOWNSTREAM Dscam3 INTRON Dscam3
2L	12404309	2L_12404309_INS [dm3] 2L_12404309_INS [dm6]	T	TT	3.433e^-4	0.905	INTRON vir-1
3R	18936783	3R_18936783_SNP [dm3] 3R_23111061_SNP [dm6]	A	T	3.434e^-4	0.905	INTRON CG13830
X	18847357	X_18847357_SNP [dm3] X_18953324_SNP [dm6]	T	A	3.438e^-4	0.905	INTRON CG43759
2R	11016166	2R_11016166_SNP [dm3] 2R_15128661_SNP [dm6]	T	A	3.442e^-4	0.905	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	2265804	X_2265804_SNP [dm3] X_2371771_SNP [dm6]	A	C	3.446e^-4	0.905	DOWNSTREAM PsGEF INTRON PsGEF
2L	1619364	2L_1619364_SNP [dm3] 2L_1619364_SNP [dm6]	C	A	3.451e^-4	0.905	DOWNSTREAM CR44603 EXON CR44603
2R	9065173	2R_9065173_SNP [dm3] 2R_13177668_SNP [dm6]	C	T	3.465e^-4	0.905	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21177799	X_21177799_SNP [dm3] X_21306772_SNP [dm6]	G	T	3.465e^-4	0.905	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19987783	2L_19987783_SNP [dm3] 2L_19987783_SNP [dm6]	C	T	3.473e^-4	0.905	INTRON CG43861
X	17158394	X_17158394_SNP [dm3] X_17264361_SNP [dm6]	T	G	3.484e^-4	0.905	INTRON f	TF binding site mE1_TFBS_inv
3L	15157064	3L_15157064_SNP [dm3] 3L_15163964_SNP [dm6]	T	C	3.497e^-4	0.905	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26956016	3R_26956016_SNP [dm3] 3R_31130294_SNP [dm6]	T	C	3.500e^-4	0.905	SYNONYMOUS_CODING CG15556	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3021229	2L_3021229_SNP [dm3] 2L_3021229_SNP [dm6]	G	A	3.509e^-4	0.905	UTR_3_PRIME CG17264 DOWNSTREAM alpha4GT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8216443	2L_8216443_SNP [dm3] 2L_8216443_SNP [dm6]	C	A	3.518e^-4	0.905	SYNONYMOUS_CODING CG8349 DOWNSTREAM CG8292
2L	22621156	2L_22621156_SNP [dm3] 2L_22728424_SNP [dm6]	T	A	3.522e^-4	0.905	INTRON CG40006
X	18214183	X_18214183_SNP [dm3] X_18320150_SNP [dm6]	G	C	3.547e^-4	0.905	INTRON CG6023
2L	14000386	2L_14000386_SNP [dm3] 2L_14000386_SNP [dm6]	T	G	3.548e^-4	0.905	INTRON rk
3R	9862746	3R_9862746_SNP [dm3] 3R_14037024_SNP [dm6]	G	A	3.549e^-4	0.905	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12858868	2R_12858868_SNP [dm3] 2R_16971363_SNP [dm6]	T	C	3.557e^-4	0.905	EXON CR44377
3L	11419666	3L_11419666_SNP [dm3] 3L_11426566_SNP [dm6]	T	C	3.559e^-4	0.905	DOWNSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	23853388	3R_23853388_SNP [dm3] 3R_28027666_SNP [dm6]	T	G	3.563e^-4	0.905	INTRON CG34362
2R	16979463	2R_16979463_SNP [dm3] 2R_21091958_SNP [dm6]	T	A	3.566e^-4	0.905	UPSTREAM Rbpn-5 & 1 other INTERGENIC
3R	24225964	3R_24225964_SNP [dm3] 3R_28400242_SNP [dm6]	C	T	3.567e^-4	0.905	INTERGENIC
3R	22987530	3R_22987530_SNP [dm3] 3R_27161808_SNP [dm6]	G	T	3.568e^-4	0.905	SYNONYMOUS_CODING CG5909
2L	18984768	2L_18984768_SNP [dm3] 2L_18984768_SNP [dm6]	T	A	3.569e^-4	0.905	INTRON Swip-1
2L	7072868	2L_7072868_SNP [dm3] 2L_7072868_SNP [dm6]	A	T	3.574e^-4	0.905	INTRON Pvf2
3R	26439960	3R_26439960_SNP [dm3] 3R_30614238_SNP [dm6]	C	A	3.577e^-4	0.905	DOWNSTREAM CR45571 EXON CR45571
2R	16161979	2R_16161979_SNP [dm3] 2R_20274474_SNP [dm6]	G	A	3.587e^-4	0.905	START_GAINED CG10444 UTR_5_PRIME CG10444 UPSTREAM CG11788	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19565280	3R_19565280_SNP [dm3] 3R_23739558_SNP [dm6]	T	C	3.598e^-4	0.905	INTRON Hmgcr
3R	8209806	3R_8209806_SNP [dm3] 3R_12384084_SNP [dm6]	C	T	3.615e^-4	0.905	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14588295	2R_14588295_SNP [dm3] 2R_18700790_SNP [dm6]	A	C	3.624e^-4	0.905	NON_SYNONYMOUS_CODING Sik3
3R	15878316	3R_15878316_SNP [dm3] 3R_20052594_SNP [dm6]	C	G	3.631e^-4	0.905	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	12718874	2L_12718874_SNP [dm3] 2L_12718874_SNP [dm6]	G	T	3.636e^-4	0.905	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20402970	2L_20402970_SNP [dm3] 2L_20402970_SNP [dm6]	C	T	3.639e^-4	0.905	INTRON CG10947
2L	22063032	2L_22063032_SNP [dm3] 2L_22063032_SNP [dm6]	C	A	3.650e^-4	0.905	INTERGENIC
3R	15074060	3R_15074060_SNP [dm3] 3R_19248338_SNP [dm6]	G	T	3.651e^-4	0.905	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3R	15473562	3R_15473562_SNP [dm3] 3R_19647840_SNP [dm6]	A	G	3.658e^-4	0.905	SYNONYMOUS_CODING CG6195 UPSTREAM CG31220 DOWNSTREAM Nup58	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10754892	3R_10754892_SNP [dm3] 3R_14929170_SNP [dm6]	C	A	3.660e^-4	0.905	INTERGENIC
2R	4465179	2R_4465179_SNP [dm3] 2R_8577674_SNP [dm6]	T	C	3.661e^-4	0.905	INTRON CG42326
2L	8513188	2L_8513188_SNP [dm3] 2L_8513188_SNP [dm6]	A	G	3.663e^-4	0.905	SYNONYMOUS_CODING CG13097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8249077	2L_8249077_SNP [dm3] 2L_8249077_SNP [dm6]	A	C	3.689e^-4	0.905	SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	7390923	3L_7390923_SNP [dm3] 3L_7397823_SNP [dm6]	A	G	3.696e^-4	0.905	NON_SYNONYMOUS_CODING CG32379 UPSTREAM CG8562	TF binding site mE1_TFBS_cad
3R	13465303	3R_13465303_SNP [dm3] 3R_17639581_SNP [dm6]	G	A	3.700e^-4	0.905	INTRON CG43175 EXON CR45222
X	3658566	X_3658566_SNP [dm3] X_3764533_SNP [dm6]	A	T	3.708e^-4	0.905	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	3112318	3L_3112318_SNP [dm3] 3L_3112318_SNP [dm6]	G	C	3.715e^-4	0.905	NON_SYNONYMOUS_CODING CG45067
3L	2500898	3L_2500898_SNP [dm3] 3L_2500898_SNP [dm6]	A	T	3.721e^-4	0.905	INTRON CG16758
3L	3084768	3L_3084768_SNP [dm3] 3L_3084768_SNP [dm6]	A	G	3.728e^-4	0.905	INTRON CG11486
3L	8601870	3L_8601870_INS [dm3] 3L_8608770_INS [dm6]	A	AT	3.732e^-4	0.905	INTRON CG6282
2L	22640003	2L_22640003_SNP [dm3] 2L_22747271_SNP [dm6]	T	C	3.733e^-4	0.905	INTRON CG40006
X	21125020	X_21125020_SNP [dm3] X_21253993_SNP [dm6]	T	A	3.739e^-4	0.905	INTRON CG32521
3R	13181712	3R_13181712_SNP [dm3] 3R_17355990_SNP [dm6]	T	C	3.740e^-4	0.905	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	3326190	3L_3326190_SNP [dm3] 3L_3326190_SNP [dm6]	C	A	3.740e^-4	0.905	UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16156397	3L_16156397_SNP [dm3] 3L_16163297_SNP [dm6]	G	T	3.748e^-4	0.905	INTRON CG5151
2R	4893039	2R_4893039_DEL [dm3] 2R_9005534_DEL [dm6]	ATT	A	3.753e^-4	0.905	UPSTREAM Np INTRON Np	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15931671	2R_15931671_SNP [dm3] 2R_20044166_SNP [dm6]	A	T	3.754e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	3.754e^-4	0.905	INTRON mam
3R	21836042	3R_21836042_SNP [dm3] 3R_26010320_SNP [dm6]	T	C	3.754e^-4	0.905	UPSTREAM E_spl_malpha-BFM INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	16562368	2R_16562368_SNP [dm3] 2R_20674863_SNP [dm6]	G	A	3.756e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3355383	2L_3355383_SNP [dm3] 2L_3355383_SNP [dm6]	C	T	3.762e^-4	0.905	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6956671	2R_6956671_SNP [dm3] 2R_11069166_SNP [dm6]	G	C	3.764e^-4	0.905	INTRON luna
3R	8492247	3R_8492247_SNP [dm3] 3R_12666525_SNP [dm6]	A	T	3.773e^-4	0.905	UPSTREAM CG14395 INTRON CG14395
3R	8492659	3R_8492659_SNP [dm3] 3R_12666937_SNP [dm6]	C	A	3.773e^-4	0.905	UPSTREAM CG14395 INTRON CG14395
X	21180690	X_21180690_SNP [dm3] X_21309663_SNP [dm6]	A	T	3.783e^-4	0.905	INTRON CG1801	transposable element FlyBase
3L	15569300	3L_15569300_SNP [dm3] 3L_15576200_SNP [dm6]	G	A	3.786e^-4	0.905	UTR_3_PRIME CG6498 UPSTREAM CG16979
2L	22607373	2L_22607373_SNP [dm3] 2L_22714641_SNP [dm6]	C	T	3.794e^-4	0.905	INTRON CG40006
3R	15074038	3R_15074038_SNP [dm3] 3R_19248316_SNP [dm6]	A	T	3.797e^-4	0.905	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
3R	20329614	3R_20329614_SNP [dm3] 3R_24503892_SNP [dm6]	T	C	3.813e^-4	0.905	INTERGENIC
2L	22067717	2L_22067717_SNP [dm3] 2L_22067717_SNP [dm6]	G	A	3.825e^-4	0.905	DOWNSTREAM CR31700 INTERGENIC	transposable element FlyBase
2R	11664531	2R_11664531_SNP [dm3] 2R_15777026_SNP [dm6]	C	T	3.827e^-4	0.905	UPSTREAM Zasp52 INTRON Zasp52
2L	9441417	2L_9441417_SNP [dm3] 2L_9441417_SNP [dm6]	C	T	3.829e^-4	0.905	UPSTREAM CG33723 INTRON numb
3L	16095870	3L_16095870_SNP [dm3] 3L_16102770_SNP [dm6]	G	T	3.833e^-4	0.905	DOWNSTREAM IntS9 INTRON CG5414
2L	11946053	2L_11946053_SNP [dm3] 2L_11946053_SNP [dm6]	C	T	3.838e^-4	0.905	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	17578991	X_17578991_SNP [dm3] X_17684958_SNP [dm6]	T	C	3.847e^-4	0.905	INTRON chas
3R	14383318	3R_14383318_INS [dm3] 3R_18557596_INS [dm6]	C	CTTTAAC	3.862e^-4	0.905	INTERGENIC
2L	9172140	2L_9172140_INS [dm3] 2L_9172140_INS [dm6]	T	TTTTAT	3.867e^-4	0.905	INTRON tai
2L	9373374	2L_9373374_SNP [dm3] 2L_9373374_SNP [dm6]	G	A	3.881e^-4	0.905	NON_SYNONYMOUS_CODING Shawl EXON CR43865	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3326189	3L_3326189_SNP [dm3] 3L_3326189_SNP [dm6]	C	T	3.882e^-4	0.905	UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	22680676	2L_22680676_SNP [dm3] 2L_22787944_SNP [dm6]	T	A	3.891e^-4	0.905	INTERGENIC
X	22209627	X_22209627_DEL [dm3] X_22807791_DEL [dm6]	ACAGTC	A	3.907e^-4	0.905	UPSTREAM CR45464 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15074051	3R_15074051_DEL [dm3] 3R_19248329_DEL [dm6]	CG	C	3.911e^-4	0.905	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19125724	2R_19125724_SNP [dm3] 2R_23238201_SNP [dm6]	C	T	3.918e^-4	0.905	INTERGENIC
3R	14998324	3R_14998324_SNP [dm3] 3R_19172602_SNP [dm6]	C	T	3.920e^-4	0.905	INTERGENIC
2L	22597975	2L_22597975_SNP [dm3] 2L_22705243_SNP [dm6]	T	A	3.920e^-4	0.905	INTRON CG40006
3L	4934481	3L_4934481_SNP [dm3] 3L_4934481_SNP [dm6]	C	T	3.925e^-4	0.905	INTERGENIC
2R	14455085	2R_14455085_SNP [dm3] 2R_18567580_SNP [dm6]	A	G	3.932e^-4	0.905	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
X	14074393	X_14074393_DEL [dm3] X_14180360_DEL [dm6]	TTGCATTACC	T	3.935e^-4	0.905	UPSTREAM CG11584 INTERGENIC
3R	26129424	3R_26129424_SNP [dm3] 3R_30303702_SNP [dm6]	A	G	3.937e^-4	0.905	INTRON hdc
2L	7155311	2L_7155311_SNP [dm3] 2L_7155311_SNP [dm6]	G	A	3.950e^-4	0.905	INTRON Pvf3	TF binding site mE1_TFBS_sens
2R	5743682	2R_5743682_SNP [dm3] 2R_9856177_SNP [dm6]	G	A	3.962e^-4	0.905	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9090612	X_9090612_SNP [dm3] X_9196579_SNP [dm6]	A	C	3.965e^-4	0.905	UPSTREAM CG12118 DOWNSTREAM su_r_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9645271	2R_9645271_SNP [dm3] 2R_13757766_SNP [dm6]	A	G	3.967e^-4	0.905	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	3.974e^-4	0.905	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2R	3292687	2R_3292687_SNP [dm3] 2R_7405182_SNP [dm6]	T	C	3.981e^-4	0.905	DOWNSTREAM CG43267 INTRON Eaf
2R	12759550	2R_12759550_SNP [dm3] 2R_16872045_SNP [dm6]	G	A	3.984e^-4	0.905	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16603407	3R_16603407_SNP [dm3] 3R_20777685_SNP [dm6]	T	G	3.987e^-4	0.905	INTRON Syp
2R	15384947	2R_15384947_SNP [dm3] 2R_19497442_SNP [dm6]	C	T	3.992e^-4	0.905	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13869789	2R_13869789_SNP [dm3] 2R_17982284_SNP [dm6]	G	C	3.997e^-4	0.905	INTRON dpr13
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	4.004e^-4	0.905	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
2L	1208876	2L_1208876_SNP [dm3] 2L_1208876_SNP [dm6]	T	C	4.004e^-4	0.905	INTERGENIC
X	21177266	X_21177266_SNP [dm3] X_21306239_SNP [dm6]	C	T	4.004e^-4	0.905	UTR_5_PRIME CG1718 INTRON CG1718	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24262697	3R_24262697_SNP [dm3] 3R_28436975_SNP [dm6]	A	G	4.011e^-4	0.905	INTRON beat-VI
3L	15569301	3L_15569301_SNP [dm3] 3L_15576201_SNP [dm6]	A	T	4.013e^-4	0.905	UTR_3_PRIME CG6498 UPSTREAM CG16979
X	12367850	X_12367850_SNP [dm3] X_12473817_SNP [dm6]	A	G	4.014e^-4	0.905	INTRON CG42258
2R	11870835	2R_11870835_SNP [dm3] 2R_15983330_SNP [dm6]	G	A	4.014e^-4	0.905	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2L	14898495	2L_14898495_SNP [dm3] 2L_14898495_SNP [dm6]	C	T	4.015e^-4	0.905	INTERGENIC
3R	8202449	3R_8202449_DEL [dm3] 3R_12376727_DEL [dm6]	TT	T	4.019e^-4	0.905	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
2L	2857830	2L_2857830_SNP [dm3] 2L_2857830_SNP [dm6]	A	C	4.020e^-4	0.905	DOWNSTREAM RpS21 INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	225259	3L_225259_DEL [dm3] 3L_225259_DEL [dm6]	AA	A	4.030e^-4	0.905	UTR_3_PRIME CG33229 INTRON CR42862	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4661017	2L_4661017_SNP [dm3] 2L_4661017_SNP [dm6]	A	C	4.033e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	8495366	2L_8495366_SNP [dm3] 2L_8495366_SNP [dm6]	T	G	4.039e^-4	0.905	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3844082	2R_3844082_SNP [dm3] 2R_7956577_SNP [dm6]	T	C	4.043e^-4	0.905	UPSTREAM CG14764 INTRON CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16280230	X_16280230_SNP [dm3] X_16386197_SNP [dm6]	C	G	4.047e^-4	0.905	UPSTREAM CG4239 INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9679118	2L_9679118_SNP [dm3] 2L_9679118_SNP [dm6]	G	A	4.050e^-4	0.905	INTERGENIC
2L	22590858	2L_22590858_SNP [dm3] 2L_22698126_SNP [dm6]	A	T	4.052e^-4	0.905	INTRON CG40006
3L	16154750	3L_16154750_SNP [dm3] 3L_16161650_SNP [dm6]	T	C	4.060e^-4	0.905	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	2956217	2R_2956217_SNP [dm3] 2R_7068712_SNP [dm6]	A	C	4.061e^-4	0.905	NON_SYNONYMOUS_CODING CG12836
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	4.063e^-4	0.905	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2156900	3L_2156900_SNP [dm3] 3L_2156900_SNP [dm6]	T	A	4.064e^-4	0.905	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
2L	17375360	2L_17375360_SNP [dm3] 2L_17375360_SNP [dm6]	A	C	4.067e^-4	0.905	INTRON Lrch	TF binding site BDTNP1_TFBS_da
2L	7906387	2L_7906387_SNP [dm3] 2L_7906387_SNP [dm6]	G	T	4.071e^-4	0.905	INTRON Snoo
3R	10296440	3R_10296440_SNP [dm3] 3R_14470718_SNP [dm6]	T	C	4.072e^-4	0.905	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5626906	3R_5626906_SNP [dm3] 3R_9801184_SNP [dm6]	A	C	4.080e^-4	0.905	UPSTREAM CG8526 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	21265161	3R_21265161_SNP [dm3] 3R_25439439_SNP [dm6]	A	T	4.081e^-4	0.905	INTRON Fur1
3R	23884697	3R_23884697_SNP [dm3] 3R_28058975_SNP [dm6]	G	A	4.092e^-4	0.905	INTRON CG34362
2R	16741747	2R_16741747_SNP [dm3] 2R_20854242_SNP [dm6]	A	T	4.107e^-4	0.905	INTERGENIC
X	12961906	X_12961906_SNP [dm3] X_13067873_SNP [dm6]	G	T	4.110e^-4	0.905	INTRON rad
X	15801041	X_15801041_SNP [dm3] X_15907008_SNP [dm6]	A	T	4.112e^-4	0.905	UTR_3_PRIME CycD DOWNSTREAM shi
2L	5907001	2L_5907001_SNP [dm3] 2L_5907001_SNP [dm6]	T	A	4.113e^-4	0.905	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13685985	3R_13685985_SNP [dm3] 3R_17860263_SNP [dm6]	A	G	4.124e^-4	0.905	INTRON tinc
X	7896596	X_7896596_SNP [dm3] X_8002563_SNP [dm6]	A	T	4.135e^-4	0.905	INTRON Tbh
X	20431146	X_20431146_SNP [dm3] X_20560119_SNP [dm6]	A	G	4.147e^-4	0.905	INTRON RunxB	TF binding site BDTNP1_TFBS_da
2L	12717950	2L_12717950_SNP [dm3] 2L_12717950_SNP [dm6]	G	A	4.150e^-4	0.905	SYNONYMOUS_CODING CG5792 INTRON CG5792
3R	10247780	3R_10247780_DEL [dm3] 3R_14422058_DEL [dm6]	TT	T	4.163e^-4	0.905	DOWNSTREAM natalisin INTRON cv-c & 1 other
2R	12025772	2R_12025772_SNP [dm3] 2R_16138267_SNP [dm6]	T	C	4.163e^-4	0.905	UPSTREAM Got1 DOWNSTREAM spin INTERGENIC
3L	14081249	3L_14081249_SNP [dm3] 3L_14088149_SNP [dm6]	C	T	4.165e^-4	0.905	INTERGENIC
2L	9172175	2L_9172175_SNP [dm3] 2L_9172175_SNP [dm6]	G	C	4.166e^-4	0.905	INTRON tai
3R	15847335	3R_15847335_INS [dm3] 3R_20021613_INS [dm6]	A	AG	4.173e^-4	0.905	UPSTREAM psidin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	22763714	2L_22763714_SNP [dm3] 2L_22870982_SNP [dm6]	G	T	4.178e^-4	0.905	INTERGENIC
3R	16569548	3R_16569548_SNP [dm3] 3R_20743826_SNP [dm6]	T	G	4.182e^-4	0.905	UTR_5_PRIME CG31199 DOWNSTREAM CG31200 INTRON CG42322
3R	6584584	3R_6584584_SNP [dm3] 3R_10758862_SNP [dm6]	A	C	4.188e^-4	0.905	DOWNSTREAM CR45015 INTRON CG31272
3R	6574424	3R_6574424_SNP [dm3] 3R_10748702_SNP [dm6]	C	A	4.210e^-4	0.905	INTRON TkR86C
X	21153249	X_21153249_SNP [dm3] X_21282222_SNP [dm6]	A	T	4.214e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11365692	3L_11365692_SNP [dm3] 3L_11372592_SNP [dm6]	C	T	4.214e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12702965	2R_12702965_SNP [dm3] 2R_16815460_SNP [dm6]	T	C	4.214e^-4	0.905	EXON CR44380
3L	13392521	3L_13392521_SNP [dm3] 3L_13399421_SNP [dm6]	T	G	4.224e^-4	0.905	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3152903	2L_3152903_SNP [dm3] 2L_3152903_SNP [dm6]	G	T	4.228e^-4	0.905	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
3L	15573636	3L_15573636_DEL [dm3] 3L_15580536_DEL [dm6]	AATA	A	4.233e^-4	0.905	UTR_5_PRIME mrn UPSTREAM CG12301 & 1 other INTRAGENIC mrn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9453756	3L_9453756_SNP [dm3] 3L_9460656_SNP [dm6]	C	T	4.244e^-4	0.905	NON_SYNONYMOUS_CODING CG3434 UPSTREAM CG44838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3R	18658675	3R_18658675_SNP [dm3] 3R_22832953_SNP [dm6]	C	T	4.248e^-4	0.905	INTERGENIC
2R	19828176	2R_19828176_SNP [dm3] 2R_23940653_SNP [dm6]	C	A	4.257e^-4	0.905	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3451306	2L_3451306_SNP [dm3] 2L_3451306_SNP [dm6]	G	A	4.263e^-4	0.905	SPLICE_SITE_ACCEPTOR Snx1 SYNONYMOUS_CODING Snx1 INTRON Snx1	TF binding site mE1_TFBS_cad
3R	7378804	3R_7378804_SNP [dm3] 3R_11553082_SNP [dm6]	C	A	4.265e^-4	0.905	INTERGENIC
2R	3845586	2R_3845586_SNP [dm3] 2R_7958081_SNP [dm6]	G	C	4.266e^-4	0.905	NON_SYNONYMOUS_CODING CG2906 DOWNSTREAM CG2915	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10575612	2L_10575612_SNP [dm3] 2L_10575612_SNP [dm6]	A	G	4.266e^-4	0.905	DOWNSTREAM w-cup INTRON Trim9
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	4.267e^-4	0.905	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	4.267e^-4	0.905	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8506691	2L_8506691_SNP [dm3] 2L_8506691_SNP [dm6]	G	A	4.268e^-4	0.905	UTR_5_PRIME Dh31
3L	5321742	3L_5321742_SNP [dm3] 3L_5328642_SNP [dm6]	T	C	4.273e^-4	0.905	INTERGENIC
3R	18658705	3R_18658705_SNP [dm3] 3R_22832983_SNP [dm6]	A	C	4.290e^-4	0.905	INTERGENIC
3R	25217525	3R_25217525_SNP [dm3] 3R_29391803_SNP [dm6]	T	C	4.290e^-4	0.905	INTRON Ptp99A
2L	22666551	2L_22666551_SNP [dm3] 2L_22773819_SNP [dm6]	T	G	4.294e^-4	0.905	INTERGENIC
2L	3815998	2L_3815998_SNP [dm3] 2L_3815998_SNP [dm6]	A	G	4.294e^-4	0.905	DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	4.299e^-4	0.905	INTRON Hmgcr
2R	14959305	2R_14959305_SNP [dm3] 2R_19071800_SNP [dm6]	T	G	4.299e^-4	0.905	INTRON 5-HT1A
3L	9870482	3L_9870482_SNP [dm3] 3L_9877382_SNP [dm6]	A	G	4.302e^-4	0.905	DOWNSTREAM CR45406 INTERGENIC
2R	17024754	2R_17024754_SNP [dm3] 2R_21137249_SNP [dm6]	G	A	4.307e^-4	0.905	INTRON Magi
2L	22539620	2L_22539620_SNP [dm3] 2L_22646888_SNP [dm6]	G	A	4.307e^-4	0.905	INTRON CG40006
3R	16035736	3R_16035736_SNP [dm3] 3R_20210014_SNP [dm6]	C	G	4.319e^-4	0.905	UPSTREAM CG17199 INTRON Nlg4
X	21177850	X_21177850_SNP [dm3] X_21306823_SNP [dm6]	T	G	4.321e^-4	0.905	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21467245	3R_21467245_SNP [dm3] 3R_25641523_SNP [dm6]	A	G	4.324e^-4	0.905	INTRON jigr1
3L	816286	3L_816286_INS [dm3] 3L_816286_INS [dm6]	T	TT	4.333e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13730455	2R_13730455_SNP [dm3] 2R_17842950_SNP [dm6]	T	C	4.335e^-4	0.905	UPSTREAM olf186-F DOWNSTREAM grh INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14194882	3R_14194882_DEL [dm3] 3R_18369160_DEL [dm6]	CT	C	4.340e^-4	0.905	UTR_3_PRIME gl INTRON gl
2L	1999129	2L_1999129_SNP [dm3] 2L_1999129_SNP [dm6]	A	G	4.341e^-4	0.905	UPSTREAM CR43464 INTRON CG33543
2R	12600545	2R_12600545_SNP [dm3] 2R_16713040_SNP [dm6]	C	T	4.348e^-4	0.905	INTRON CG30463
3R	20374855	3R_20374855_SNP [dm3] 3R_24549133_SNP [dm6]	T	C	4.356e^-4	0.905	UTR_5_PRIME Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z
2R	9058163	2R_9058163_SNP [dm3] 2R_13170658_SNP [dm6]	G	A	4.356e^-4	0.905	UTR_3_PRIME Spt-I UPSTREAM AGBE EXON CR45142	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3R	9772477	3R_9772477_SNP [dm3] 3R_13946755_SNP [dm6]	A	G	4.358e^-4	0.905	UPSTREAM Art6 INTERGENIC
X	11603545	X_11603545_SNP [dm3] X_11709512_SNP [dm6]	G	A	4.360e^-4	0.905	UTR_5_PRIME FucT6 DOWNSTREAM Amun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23884499	3R_23884499_SNP [dm3] 3R_28058777_SNP [dm6]	T	G	4.363e^-4	0.905	INTRON CG34362
2L	3268128	2L_3268128_SNP [dm3] 2L_3268128_SNP [dm6]	T	A	4.363e^-4	0.905	UPSTREAM CR44484 INTERGENIC
3L	7266156	3L_7266156_SNP [dm3] 3L_7273056_SNP [dm6]	A	C	4.369e^-4	0.905	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2R	7541582	2R_7541582_SNP [dm3] 2R_11654077_SNP [dm6]	G	A	4.373e^-4	0.905	UPSTREAM CG13198 INTRON Roc2
3L	4891470	3L_4891470_SNP [dm3] 3L_4891470_SNP [dm6]	A	T	4.374e^-4	0.905	SYNONYMOUS_CODING CG17150
2L	22706637	2L_22706637_SNP [dm3] 2L_22813905_SNP [dm6]	A	G	4.376e^-4	0.905	INTERGENIC
2R	16561900	2R_16561900_SNP [dm3] 2R_20674395_SNP [dm6]	C	T	4.389e^-4	0.905	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10174020	3R_10174020_SNP [dm3] 3R_14348298_SNP [dm6]	G	A	4.389e^-4	0.905	INTRON NK7.1
2L	3660760	2L_3660760_SNP [dm3] 2L_3660760_SNP [dm6]	T	C	4.395e^-4	0.905	INTERGENIC
2L	3737099	2L_3737099_SNP [dm3] 2L_3737099_SNP [dm6]	C	A	4.398e^-4	0.905	INTRON CG10019
2L	4909443	2L_4909443_SNP [dm3] 2L_4909443_SNP [dm6]	A	T	4.400e^-4	0.905	INTRON hoe1
X	7787839	X_7787839_SNP [dm3] X_7893806_SNP [dm6]	G	A	4.402e^-4	0.905	UPSTREAM p115 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco
3L	1982534	3L_1982534_SNP [dm3] 3L_1982534_SNP [dm6]	C	G	4.405e^-4	0.905	INTERGENIC
2L	2304517	2L_2304517_SNP [dm3] 2L_2304517_SNP [dm6]	C	T	4.418e^-4	0.905	INTERGENIC
X	3144849	X_3144849_SNP [dm3] X_3250816_SNP [dm6]	T	C	4.430e^-4	0.905	NON_SYNONYMOUS_CODING Sgs4 INTRON dnc
2R	11866719	2R_11866719_SNP [dm3] 2R_15979214_SNP [dm6]	A	G	4.431e^-4	0.905	SYNONYMOUS_CODING Strn-Mlck
X	7787196	X_7787196_SNP [dm3] X_7893163_SNP [dm6]	G	T	4.445e^-4	0.905	SYNONYMOUS_CODING CG18624 UTR_3_PRIME CG45089 UPSTREAM p115	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8492943	3R_8492943_SNP [dm3] 3R_12667221_SNP [dm6]	G	C	4.446e^-4	0.905	UPSTREAM CG14395 INTRON CG14395
3R	24249741	3R_24249741_SNP [dm3] 3R_28424019_SNP [dm6]	A	G	4.447e^-4	0.905	INTRON beat-VI
2L	8315862	2L_8315862_SNP [dm3] 2L_8315862_SNP [dm6]	A	T	4.447e^-4	0.905	NON_SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_sens
3R	26779818	3R_26779818_SNP [dm3] 3R_30954096_SNP [dm6]	T	G	4.458e^-4	0.905	INTERGENIC
3R	12885024	3R_12885024_INS [dm3] 3R_17059302_INS [dm6]	T	TT	4.471e^-4	0.905	INTRON Dad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18697876	3L_18697876_SNP [dm3] 3L_18704776_SNP [dm6]	G	A	4.483e^-4	0.905	INTERGENIC
X	7971116	X_7971116_SNP [dm3] X_8077083_SNP [dm6]	C	A	4.490e^-4	0.905	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2956232	2R_2956232_INS [dm3] 2R_7068727_INS [dm6]	G	CTACATCAAC	4.491e^-4	0.905
2R	10025833	2R_10025833_SNP [dm3] 2R_14138328_SNP [dm6]	A	C	4.491e^-4	0.905	INTRON Prosap
X	14927593	X_14927593_SNP [dm3] X_15033560_SNP [dm6]	T	C	4.500e^-4	0.905	INTRON hiw & 1 other
2R	9583786	2R_9583786_SNP [dm3] 2R_13696281_SNP [dm6]	A	G	4.501e^-4	0.905	INTRON fas
2L	16202374	2L_16202374_SNP [dm3] 2L_16202374_SNP [dm6]	C	G	4.502e^-4	0.905	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	3910488	2R_3910488_SNP [dm3] 2R_8022983_SNP [dm6]	A	C	4.511e^-4	0.905	EXON CR45267	TF binding site mE1_TFBS_HSA
3L	3012061	3L_3012061_SNP [dm3] 3L_3012061_SNP [dm6]	A	G	4.513e^-4	0.905	DOWNSTREAM FMRFaR INTERGENIC
3L	3286289	3L_3286289_SNP [dm3] 3L_3286289_SNP [dm6]	T	C	4.526e^-4	0.905	INTRON CG12017
2L	22701265	2L_22701265_SNP [dm3] 2L_22808533_SNP [dm6]	G	A	4.527e^-4	0.905	INTERGENIC
2R	14674541	2R_14674541_DEL [dm3] 2R_18787036_DEL [dm6]	CTGCT	A	4.527e^-4	0.905	INTRON CG15080
2L	22609817	2L_22609817_SNP [dm3] 2L_22717085_SNP [dm6]	G	A	4.530e^-4	0.905	INTRON CG40006
2L	3261361	2L_3261361_SNP [dm3] 2L_3261361_SNP [dm6]	G	T	4.538e^-4	0.905	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
2L	15246507	2L_15246507_SNP [dm3] 2L_15246507_SNP [dm6]	C	T	4.543e^-4	0.905	UPSTREAM ZnT35C INTRON ZnT35C
3L	3112286	3L_3112286_SNP [dm3] 3L_3112286_SNP [dm6]	A	C	4.552e^-4	0.905	NON_SYNONYMOUS_CODING CG45067
3R	26618052	3R_26618052_SNP [dm3] 3R_30792330_SNP [dm6]	C	T	4.553e^-4	0.905	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10624826	X_10624826_SNP [dm3] X_10730793_SNP [dm6]	A	G	4.557e^-4	0.905	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	3303593	2L_3303593_SNP [dm3] 2L_3303593_SNP [dm6]	T	C	4.562e^-4	0.905	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7789593	X_7789593_SNP [dm3] X_7895560_SNP [dm6]	A	G	4.569e^-4	0.905	SYNONYMOUS_CODING p115	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9634257	3L_9634257_SNP [dm3] 3L_9641157_SNP [dm6]	G	T	4.572e^-4	0.905	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
2R	6822249	2R_6822249_SNP [dm3] 2R_10934744_SNP [dm6]	G	C	4.573e^-4	0.905	INTERGENIC
2R	19086281	2R_19086281_SNP [dm3] 2R_23198758_SNP [dm6]	T	A	4.574e^-4	0.905	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13673353	2L_13673353_INS [dm3] 2L_13673353_INS [dm6]	T	TGTTTT	4.579e^-4	0.905	DOWNSTREAM CG18507 INTERGENIC
2R	12757350	2R_12757350_SNP [dm3] 2R_16869845_SNP [dm6]	C	T	4.582e^-4	0.905	DOWNSTREAM Ef1beta INTRON CG6426
2R	12757351	2R_12757351_SNP [dm3] 2R_16869846_SNP [dm6]	C	T	4.582e^-4	0.905	DOWNSTREAM Ef1beta INTRON CG6426
2L	22596590	2L_22596590_SNP [dm3] 2L_22703858_SNP [dm6]	A	T	4.592e^-4	0.905	INTRON CG40006
2R	9969344	2R_9969344_SNP [dm3] 2R_14081839_SNP [dm6]	T	C	4.593e^-4	0.905	INTRON Prosap	TF binding site mE1_TFBS_chinmo
2L	9990929	2L_9990929_SNP [dm3] 2L_9990929_SNP [dm6]	G	A	4.593e^-4	0.905	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	5465154	2R_5465154_SNP [dm3] 2R_9577649_SNP [dm6]	C	T	4.603e^-4	0.905	UPSTREAM Not1 INTRON Not1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16882167	3L_16882167_SNP [dm3] 3L_16889067_SNP [dm6]	C	T	4.619e^-4	0.905	INTRON Lmpt
2L	6544319	2L_6544319_SNP [dm3] 2L_6544319_SNP [dm6]	G	A	4.627e^-4	0.905	INTRON eya	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14769618	X_14769618_INS [dm3] X_14875585_INS [dm6]	T	TAGA	4.637e^-4	0.905	UTR_3_PRIME CG45065 & 1 other INTRON Flo2
X	20945631	X_20945631_SNP [dm3] X_21074604_SNP [dm6]	C	A	4.644e^-4	0.905	INTRON bves
2R	16562359	2R_16562359_SNP [dm3] 2R_20674854_SNP [dm6]	C	T	4.648e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8540525	2L_8540525_SNP [dm3] 2L_8540525_SNP [dm6]	G	C	4.670e^-4	0.905	SYNONYMOUS_CODING CG17834	TF binding site BDTNP1_TFBS_twi
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	4.671e^-4	0.905	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16803137	X_16803137_SNP [dm3] X_16909104_SNP [dm6]	T	C	4.674e^-4	0.905	INTRON CR44754
2L	16653932	2L_16653932_SNP [dm3] 2L_16653932_SNP [dm6]	A	C	4.677e^-4	0.905	INTRON CG42389	TF binding site mE1_TFBS_inv
X	9331233	X_9331233_SNP [dm3] X_9437200_SNP [dm6]	A	G	4.683e^-4	0.905	INTRON mgl
2R	2956266	2R_2956266_SNP [dm3] 2R_7068761_SNP [dm6]	A	G	4.687e^-4	0.905	SPLICE_SITE_REGION CG12836 INTRON CG12836
2R	7036877	2R_7036877_SNP [dm3] 2R_11149372_SNP [dm6]	T	A	4.691e^-4	0.905	NON_SYNONYMOUS_CODING CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	22703255	2L_22703255_SNP [dm3] 2L_22810523_SNP [dm6]	T	C	4.694e^-4	0.905	INTERGENIC
2R	13782573	2R_13782573_SNP [dm3] 2R_17895068_SNP [dm6]	C	A	4.694e^-4	0.905	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_twi
X	4326054	X_4326054_SNP [dm3] X_4432021_SNP [dm6]	G	T	4.696e^-4	0.905	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
2L	22392198	2L_22392198_SNP [dm3] 2L_22392198_SNP [dm6]	A	G	4.703e^-4	0.905	INTERGENIC
3L	16087017	3L_16087017_SNP [dm3] 3L_16093917_SNP [dm6]	G	C	4.713e^-4	0.905	SYNONYMOUS_CODING ClC-c
X	19779568	X_19779568_SNP [dm3] X_19885535_SNP [dm6]	G	A	4.724e^-4	0.905	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4352655	X_4352655_SNP [dm3] X_4458622_SNP [dm6]	C	T	4.729e^-4	0.905	INTRON CR32773 & 1 other
2L	20136568	2L_20136568_SNP [dm3] 2L_20136568_SNP [dm6]	T	C	4.735e^-4	0.905	INTERGENIC
3L	9526319	3L_9526319_SNP [dm3] 3L_9533219_SNP [dm6]	G	A	4.737e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7633235	3R_7633235_SNP [dm3] 3R_11807513_SNP [dm6]	G	A	4.739e^-4	0.905	UPSTREAM ClC-a INTRON ClC-a
3R	23839018	3R_23839018_SNP [dm3] 3R_28013296_SNP [dm6]	C	A	4.740e^-4	0.905	INTERGENIC
2R	3280655	2R_3280655_SNP [dm3] 2R_7393150_SNP [dm6]	A	G	4.755e^-4	0.905	UTR_5_PRIME Gr43a DOWNSTREAM CG1707
3R	2242183	3R_2242183_SNP [dm3] 3R_6416461_SNP [dm6]	G	C	4.755e^-4	0.905	INTRON gpp
3R	7633270	3R_7633270_SNP [dm3] 3R_11807548_SNP [dm6]	A	G	4.758e^-4	0.905	UPSTREAM ClC-a INTRON ClC-a
2R	14455081	2R_14455081_SNP [dm3] 2R_18567576_SNP [dm6]	A	G	4.761e^-4	0.905	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3R	26520000	3R_26520000_SNP [dm3] 3R_30694278_SNP [dm6]	G	A	4.765e^-4	0.905	SYNONYMOUS_CODING CG12069
3R	11708564	3R_11708564_SNP [dm3] 3R_15882842_SNP [dm6]	G	T	4.770e^-4	0.905	INTERGENIC
X	14219497	X_14219497_SNP [dm3] X_14325464_SNP [dm6]	A	G	4.773e^-4	0.905	INTRON dpr8
2L	6355844	2L_6355844_SNP [dm3] 2L_6355844_SNP [dm6]	G	T	4.786e^-4	0.905	INTRON ppk14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3261377	2L_3261377_SNP [dm3] 2L_3261377_SNP [dm6]	C	T	4.787e^-4	0.905	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
2L	6260489	2L_6260489_SNP [dm3] 2L_6260489_SNP [dm6]	A	T	4.796e^-4	0.905	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7846204	2R_7846204_SNP [dm3] 2R_11958699_SNP [dm6]	T	C	4.801e^-4	0.905	INTRON CG13188
X	17074141	X_17074141_DEL [dm3] X_17180108_DEL [dm6]	TGAAAATGT	T	4.802e^-4	0.905	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12544721	2L_12544721_SNP [dm3] 2L_12544721_SNP [dm6]	A	G	4.806e^-4	0.905	DOWNSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12668459	2L_12668459_SNP [dm3] 2L_12668459_SNP [dm6]	T	G	4.806e^-4	0.905	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2
3R	15073442	3R_15073442_SNP [dm3] 3R_19247720_SNP [dm6]	T	C	4.808e^-4	0.905	INTRON CG5217
3L	3112560	3L_3112560_SNP [dm3] 3L_3112560_SNP [dm6]	G	A	4.810e^-4	0.905	SYNONYMOUS_CODING CG45067
2R	3921284	2R_3921284_SNP [dm3] 2R_8033779_SNP [dm6]	T	C	4.814e^-4	0.905	INTRON Optix
2R	12649882	2R_12649882_SNP [dm3] 2R_16762377_SNP [dm6]	G	A	4.816e^-4	0.905	SYNONYMOUS_CODING unc-104
2L	22614198	2L_22614198_SNP [dm3] 2L_22721466_SNP [dm6]	C	A	4.819e^-4	0.905	INTRON CG40006
3R	25522548	3R_25522548_DEL [dm3] 3R_29696826_DEL [dm6]	TT	T	4.820e^-4	0.905	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi
X	21180712	X_21180712_SNP [dm3] X_21309685_SNP [dm6]	C	G	4.822e^-4	0.905	INTRON CG1801	transposable element FlyBase
2L	14611456	2L_14611456_SNP [dm3] 2L_14611456_SNP [dm6]	C	T	4.822e^-4	0.905	INTRON osp	regulatory region REDfly_CRMs
2L	9465064	2L_9465064_SNP [dm3] 2L_9465064_SNP [dm6]	G	A	4.822e^-4	0.905	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7170795	2L_7170795_SNP [dm3] 2L_7170795_SNP [dm6]	G	T	4.837e^-4	0.905	INTERGENIC
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	4.839e^-4	0.905	UPSTREAM CG10635 & 1 other INTERGENIC
2L	8410821	2L_8410821_SNP [dm3] 2L_8410821_SNP [dm6]	T	G	4.840e^-4	0.905	SYNONYMOUS_CODING CG13397
3R	23904162	3R_23904162_SNP [dm3] 3R_28078440_SNP [dm6]	T	C	4.842e^-4	0.905	INTRON CG34362
2L	22373853	2L_22373853_SNP [dm3] 2L_22373853_SNP [dm6]	C	A	4.842e^-4	0.905	INTERGENIC	transposable element FlyBase
3R	23887526	3R_23887526_SNP [dm3] 3R_28061804_SNP [dm6]	G	C	4.842e^-4	0.905	INTRON CG34362
X	12368030	X_12368030_SNP [dm3] X_12473997_SNP [dm6]	C	A	4.843e^-4	0.905	INTRON CG42258
2R	13819112	2R_13819112_SNP [dm3] 2R_17931607_SNP [dm6]	C	G	4.848e^-4	0.905	INTERGENIC
3R	19304643	3R_19304643_SNP [dm3] 3R_23478921_SNP [dm6]	T	A	4.849e^-4	0.905	INTERGENIC
2L	14103603	2L_14103603_SNP [dm3] 2L_14103603_SNP [dm6]	G	A	4.855e^-4	0.905	UPSTREAM CG16879 INTERGENIC
2L	9694955	2L_9694955_SNP [dm3] 2L_9694955_SNP [dm6]	T	A	4.859e^-4	0.905	INTRON Pka-C1
2R	6462227	2R_6462227_SNP [dm3] 2R_10574722_SNP [dm6]	A	G	4.861e^-4	0.905	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4897636	2L_4897636_SNP [dm3] 2L_4897636_SNP [dm6]	C	T	4.861e^-4	0.905	INTRON CG3036	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8509167	3R_8509167_SNP [dm3] 3R_12683445_SNP [dm6]	T	C	4.864e^-4	0.905	SYNONYMOUS_CODING kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Cuticul_n_C23 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results