DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.367e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07399
In_3R_K	0.02928

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.8618	0.088

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1775 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	6.154e^-7	0.762	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	1.401e^-6	0.762	INTRON CG18769
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	1.767e^-6	0.762	INTRON CG18769
3L	3924085	3L_3924085_INS [dm3] 3L_3924085_INS [dm6]	A	AGAAGTAAAAA...	1.907e^-6	0.762	INTRON Eip63F-1
3L	3924092	3L_3924092_SNP [dm3] 3L_3924092_SNP [dm6]	T	A	2.031e^-6	0.762	INTRON Eip63F-1
2L	16128095	2L_16128095_INS [dm3] 2L_16128095_INS [dm6]	A	AA	2.756e^-6	0.862	INTERGENIC
2L	14945721	2L_14945721_SNP [dm3] 2L_14945721_SNP [dm6]	C	T	3.709e^-6	0.931	INTRON CG42313
X	12509830	X_12509830_SNP [dm3] X_12615797_SNP [dm6]	A	G	5.876e^-6	0.931	UPSTREAM CG11085 & 1 other DOWNSTREAM CG2543 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11016484	3L_11016484_DEL [dm3] 3L_11023384_DEL [dm6]	TTAATTTGTAATTTGT...	T	5.918e^-6	0.931	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
2R	6308184	2R_6308184_SNP [dm3] 2R_10420679_SNP [dm6]	C	T	6.067e^-6	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5289494	3L_5289494_SNP [dm3] 3L_5296394_SNP [dm6]	T	C	6.986e^-6	0.931	INTERGENIC
3L	2884715	3L_2884715_SNP [dm3] 3L_2884715_SNP [dm6]	C	T	7.814e^-6	0.931	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4512204	2L_4512204_SNP [dm3] 2L_4512204_SNP [dm6]	C	A	8.491e^-6	0.931	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	9.462e^-6	0.931	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	25080941	3R_25080941_SNP [dm3] 3R_29255219_SNP [dm6]	T	C	1.121e^-5	0.931	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14945823	2L_14945823_SNP [dm3] 2L_14945823_SNP [dm6]	A	T	1.125e^-5	0.931	INTRON CG42313
3L	14901868	3L_14901868_SNP [dm3] 3L_14908768_SNP [dm6]	T	C	1.156e^-5	0.931	INTRON DCX-EMAP
2R	6308200	2R_6308200_SNP [dm3] 2R_10420695_SNP [dm6]	T	C	1.171e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	6308201	2R_6308201_SNP [dm3] 2R_10420696_SNP [dm6]	C	T	1.171e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	14691155	3L_14691155_SNP [dm3] 3L_14698055_SNP [dm6]	G	T	1.184e^-5	0.931	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
3R	25080949	3R_25080949_SNP [dm3] 3R_29255227_SNP [dm6]	C	T	1.300e^-5	0.931	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17279091	3R_17279091_SNP [dm3] 3R_21453369_SNP [dm6]	C	A	1.387e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	1.398e^-5	0.931	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2R	15002548	2R_15002548_SNP [dm3] 2R_19115043_SNP [dm6]	C	A	1.462e^-5	0.931	INTRON 5-HT1A
3R	15125369	3R_15125369_SNP [dm3] 3R_19299647_SNP [dm6]	A	C	1.464e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_sens
3L	2884730	3L_2884730_SNP [dm3] 3L_2884730_SNP [dm6]	C	T	1.577e^-5	0.931	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11016441	3L_11016441_SNP [dm3] 3L_11023341_SNP [dm6]	G	A	1.672e^-5	0.931	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
3R	20010252	3R_20010252_SNP [dm3] 3R_24184530_SNP [dm6]	T	A	1.941e^-5	0.931	DOWNSTREAM CG13606 INTERGENIC
2L	14945836	2L_14945836_SNP [dm3] 2L_14945836_SNP [dm6]	G	A	1.961e^-5	0.931	INTRON CG42313
3R	25081143	3R_25081143_SNP [dm3] 3R_29255421_SNP [dm6]	T	C	1.964e^-5	0.931	UTR_5_PRIME stg UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15513477	3L_15513477_DEL [dm3] 3L_15520377_DEL [dm6]	AGAGGAAACTGTG...	A	1.990e^-5	0.931	UPSTREAM mex1 & 1 other EXON CR43159	TF binding site BDTNP1_TFBS_twi
3R	23872856	3R_23872856_SNP [dm3] 3R_28047134_SNP [dm6]	C	T	2.012e^-5	0.931	UPSTREAM CG34362 INTRON CG34362
X	8635052	X_8635052_DEL [dm3] X_8741019_DEL [dm6]	TTGTGTGCAATTTT...	T	2.094e^-5	0.931	INTERGENIC
2R	6308031	2R_6308031_SNP [dm3] 2R_10420526_SNP [dm6]	A	G	2.132e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6625440	X_6625440_SNP [dm3] X_6731407_SNP [dm6]	T	C	2.136e^-5	0.931	UPSTREAM CG3168 INTRON CG3168
3R	3364516	3R_3364516_SNP [dm3] 3R_7538794_SNP [dm6]	A	G	2.167e^-5	0.931	UPSTREAM alpha-Est4 DOWNSTREAM alpha-Est3 INTERGENIC
3L	16758271	3L_16758271_SNP [dm3] 3L_16765171_SNP [dm6]	C	T	2.170e^-5	0.931	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	2.271e^-5	0.931	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6308033	2R_6308033_SNP [dm3] 2R_10420528_SNP [dm6]	C	T	2.289e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18402764	2L_18402764_SNP [dm3] 2L_18402764_SNP [dm6]	A	T	2.302e^-5	0.931	INTERGENIC
2R	6308168	2R_6308168_SNP [dm3] 2R_10420663_SNP [dm6]	A	C	2.326e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	12291226	3L_12291226_DEL [dm3] 3L_12298126_DEL [dm6]	GGG	G	2.330e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24843726	3R_24843726_SNP [dm3] 3R_29018004_SNP [dm6]	G	T	2.426e^-5	0.931	INTRON wat
2R	6758389	2R_6758389_SNP [dm3] 2R_10870884_SNP [dm6]	G	A	2.434e^-5	0.931	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6308014	2R_6308014_SNP [dm3] 2R_10420509_SNP [dm6]	C	T	2.486e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7424737	3L_7424737_INS [dm3] 3L_7431637_INS [dm6]	T	TGTATTA	2.566e^-5	0.931	INTRON CG42458
3L	10732033	3L_10732033_SNP [dm3] 3L_10738933_SNP [dm6]	C	A	2.627e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	2.694e^-5	0.931	INTRON kar	TF binding site mE1_TFBS_cad
2R	6308167	2R_6308167_SNP [dm3] 2R_10420662_SNP [dm6]	T	G	2.704e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	10368231	2R_10368231_SNP [dm3] 2R_14480726_SNP [dm6]	A	T	2.832e^-5	0.931	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10112193	2R_10112193_SNP [dm3] 2R_14224688_SNP [dm6]	G	T	2.869e^-5	0.931	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23971501	3R_23971501_SNP [dm3] 3R_28145779_SNP [dm6]	T	A	2.876e^-5	0.931	INTERGENIC
2R	6307285	2R_6307285_INS [dm3] 2R_10419780_INS [dm6]	T	TT	2.951e^-5	0.931	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	549339	2L_549339_SNP [dm3] 2L_549339_SNP [dm6]	C	T	3.095e^-5	0.931	UTR_5_PRIME Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3923976	3L_3923976_SNP [dm3] 3L_3923976_SNP [dm6]	G	A	3.192e^-5	0.931	INTRON Eip63F-1
3R	15115482	3R_15115482_DEL [dm3] 3R_19289760_DEL [dm6]	GCT	G	3.231e^-5	0.931	DOWNSTREAM CR43451 INTERGENIC
3L	15518673	3L_15518673_SNP [dm3] 3L_15525573_SNP [dm6]	G	A	3.327e^-5	0.931	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
2L	18608603	2L_18608603_SNP [dm3] 2L_18608603_SNP [dm6]	G	A	3.475e^-5	0.931	SYNONYMOUS_CODING CG10333 DOWNSTREAM Atac2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12482424	3L_12482424_SNP [dm3] 3L_12489324_SNP [dm6]	G	A	3.530e^-5	0.931	UPSTREAM CR45681 INTRON CG10660
3R	25107982	3R_25107982_SNP [dm3] 3R_29282260_SNP [dm6]	C	T	3.572e^-5	0.931	INTERGENIC	regulatory region REDfly_CRMs
2R	6308069	2R_6308069_SNP [dm3] 2R_10420564_SNP [dm6]	A	C	3.584e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6304459	2R_6304459_SNP [dm3] 2R_10416954_SNP [dm6]	C	A	3.674e^-5	0.931	UTR_5_PRIME CG42732	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	14425360	2R_14425360_SNP [dm3] 2R_18537855_SNP [dm6]	C	T	3.683e^-5	0.931	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5700310	3R_5700310_DEL [dm3] 3R_9874588_DEL [dm6]	GAG	G	3.743e^-5	0.931	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20696518	2L_20696518_SNP [dm3] 2L_20696518_SNP [dm6]	A	C	3.939e^-5	0.931	INTRON Hr38
X	17195478	X_17195478_SNP [dm3] X_17301445_SNP [dm6]	G	T	3.943e^-5	0.931	UTR_5_PRIME Fim UPSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15262039	3L_15262039_SNP [dm3] 3L_15268939_SNP [dm6]	T	C	3.946e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	11011554	3L_11011554_SNP [dm3] 3L_11018454_SNP [dm6]	T	C	3.951e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8108735	3R_8108735_SNP [dm3] 3R_12283013_SNP [dm6]	A	G	3.958e^-5	0.931	INTRON svp
3L	7448754	3L_7448754_SNP [dm3] 3L_7455654_SNP [dm6]	C	T	3.959e^-5	0.931	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	7425079	3L_7425079_SNP [dm3] 3L_7431979_SNP [dm6]	G	T	3.960e^-5	0.931	INTRON CG42458
2L	18955125	2L_18955125_SNP [dm3] 2L_18955125_SNP [dm6]	A	T	4.053e^-5	0.931	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	10079180	3R_10079180_SNP [dm3] 3R_14253458_SNP [dm6]	T	C	4.171e^-5	0.931	INTRON Aats-met
3R	23971583	3R_23971583_SNP [dm3] 3R_28145861_SNP [dm6]	G	A	4.173e^-5	0.931	INTERGENIC
2R	10112136	2R_10112136_SNP [dm3] 2R_14224631_SNP [dm6]	T	A	4.225e^-5	0.931	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15292646	3L_15292646_SNP [dm3] 3L_15299546_SNP [dm6]	C	A	4.389e^-5	0.931	SYNONYMOUS_CODING Best4
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	4.414e^-5	0.931	INTRON H2.0
X	17007559	X_17007559_SNP [dm3] X_17113526_SNP [dm6]	G	C	4.431e^-5	0.931	INTRON CG5004
2R	6304547	2R_6304547_SNP [dm3] 2R_10417042_SNP [dm6]	A	G	4.537e^-5	0.931	UPSTREAM CG42732 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	6302928	X_6302928_SNP [dm3] X_6408895_SNP [dm6]	C	T	4.539e^-5	0.931	INTERGENIC
3L	3908469	3L_3908469_SNP [dm3] 3L_3908469_SNP [dm6]	C	T	4.576e^-5	0.931	SYNONYMOUS_CODING mge UTR_3_PRIME mge DOWNSTREAM ida
2R	6940783	2R_6940783_SNP [dm3] 2R_11053278_SNP [dm6]	C	G	4.584e^-5	0.931	INTRON luna
2R	10071218	2R_10071218_SNP [dm3] 2R_14183713_SNP [dm6]	T	A	4.633e^-5	0.931	DOWNSTREAM cg INTERGENIC
2R	6894859	2R_6894859_SNP [dm3] 2R_11007354_SNP [dm6]	T	G	4.651e^-5	0.931	INTRON luna
2R	10109876	2R_10109876_SNP [dm3] 2R_14222371_SNP [dm6]	T	A	4.651e^-5	0.931	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2659303	3L_2659303_SNP [dm3] 3L_2659303_SNP [dm6]	T	A	4.701e^-5	0.931	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5515240	2L_5515240_SNP [dm3] 2L_5515240_SNP [dm6]	T	C	4.758e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10506184	3R_10506184_SNP [dm3] 3R_14680462_SNP [dm6]	C	A	4.780e^-5	0.931	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18954378	2L_18954378_DEL [dm3] 2L_18954378_DEL [dm6]	AACGGTGGA	A	4.808e^-5	0.931	UTR_5_PRIME CG10621 UPSTREAM CR44741
3L	12291467	3L_12291467_SNP [dm3] 3L_12298367_SNP [dm6]	A	G	4.821e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24488980	3R_24488980_SNP [dm3] 3R_28663258_SNP [dm6]	A	G	4.838e^-5	0.931	INTERGENIC
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	4.857e^-5	0.931	UPSTREAM CG6527 INTRON A2bp1
X	19188035	X_19188035_SNP [dm3] X_19294002_SNP [dm6]	G	A	4.887e^-5	0.931	INTRON CG8034
X	14428138	X_14428138_SNP [dm3] X_14534105_SNP [dm6]	C	G	4.894e^-5	0.931	INTERGENIC
2R	15174877	2R_15174877_SNP [dm3] 2R_19287372_SNP [dm6]	T	A	4.906e^-5	0.931	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23022773	3R_23022773_SNP [dm3] 3R_27197051_SNP [dm6]	A	G	5.044e^-5	0.931	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3924071	3L_3924071_SNP [dm3] 3L_3924071_SNP [dm6]	A	C	5.090e^-5	0.931	INTRON Eip63F-1
3R	27027305	3R_27027305_SNP [dm3] 3R_31201583_SNP [dm6]	C	T	5.092e^-5	0.931	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_cad
3L	15292667	3L_15292667_SNP [dm3] 3L_15299567_SNP [dm6]	C	T	5.099e^-5	0.931	SYNONYMOUS_CODING Best4
3R	25080757	3R_25080757_SNP [dm3] 3R_29255035_SNP [dm6]	T	A	5.126e^-5	0.931	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_x_C23_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results