DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.367e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07399
In_3R_K	0.02928

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.8618	0.088

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1775 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	6.154e^-7	0.762	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	1.401e^-6	0.762	INTRON CG18769
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	1.767e^-6	0.762	INTRON CG18769
3L	3924085	3L_3924085_INS [dm3] 3L_3924085_INS [dm6]	A	AGAAGTAAAAA...	1.907e^-6	0.762	INTRON Eip63F-1
3L	3924092	3L_3924092_SNP [dm3] 3L_3924092_SNP [dm6]	T	A	2.031e^-6	0.762	INTRON Eip63F-1
2L	16128095	2L_16128095_INS [dm3] 2L_16128095_INS [dm6]	A	AA	2.756e^-6	0.862	INTERGENIC
2L	14945721	2L_14945721_SNP [dm3] 2L_14945721_SNP [dm6]	C	T	3.709e^-6	0.931	INTRON CG42313
X	12509830	X_12509830_SNP [dm3] X_12615797_SNP [dm6]	A	G	5.876e^-6	0.931	UPSTREAM CG11085 & 1 other DOWNSTREAM CG2543 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11016484	3L_11016484_DEL [dm3] 3L_11023384_DEL [dm6]	TTAATTTGTAATTTGT...	T	5.918e^-6	0.931	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
2R	6308184	2R_6308184_SNP [dm3] 2R_10420679_SNP [dm6]	C	T	6.067e^-6	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5289494	3L_5289494_SNP [dm3] 3L_5296394_SNP [dm6]	T	C	6.986e^-6	0.931	INTERGENIC
3L	2884715	3L_2884715_SNP [dm3] 3L_2884715_SNP [dm6]	C	T	7.814e^-6	0.931	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4512204	2L_4512204_SNP [dm3] 2L_4512204_SNP [dm6]	C	A	8.491e^-6	0.931	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	9.462e^-6	0.931	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	25080941	3R_25080941_SNP [dm3] 3R_29255219_SNP [dm6]	T	C	1.121e^-5	0.931	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14945823	2L_14945823_SNP [dm3] 2L_14945823_SNP [dm6]	A	T	1.125e^-5	0.931	INTRON CG42313
3L	14901868	3L_14901868_SNP [dm3] 3L_14908768_SNP [dm6]	T	C	1.156e^-5	0.931	INTRON DCX-EMAP
2R	6308200	2R_6308200_SNP [dm3] 2R_10420695_SNP [dm6]	T	C	1.171e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	6308201	2R_6308201_SNP [dm3] 2R_10420696_SNP [dm6]	C	T	1.171e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	14691155	3L_14691155_SNP [dm3] 3L_14698055_SNP [dm6]	G	T	1.184e^-5	0.931	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
3R	25080949	3R_25080949_SNP [dm3] 3R_29255227_SNP [dm6]	C	T	1.300e^-5	0.931	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17279091	3R_17279091_SNP [dm3] 3R_21453369_SNP [dm6]	C	A	1.387e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	1.398e^-5	0.931	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2R	15002548	2R_15002548_SNP [dm3] 2R_19115043_SNP [dm6]	C	A	1.462e^-5	0.931	INTRON 5-HT1A
3R	15125369	3R_15125369_SNP [dm3] 3R_19299647_SNP [dm6]	A	C	1.464e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_sens
3L	2884730	3L_2884730_SNP [dm3] 3L_2884730_SNP [dm6]	C	T	1.577e^-5	0.931	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11016441	3L_11016441_SNP [dm3] 3L_11023341_SNP [dm6]	G	A	1.672e^-5	0.931	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
3R	20010252	3R_20010252_SNP [dm3] 3R_24184530_SNP [dm6]	T	A	1.941e^-5	0.931	DOWNSTREAM CG13606 INTERGENIC
2L	14945836	2L_14945836_SNP [dm3] 2L_14945836_SNP [dm6]	G	A	1.961e^-5	0.931	INTRON CG42313
3R	25081143	3R_25081143_SNP [dm3] 3R_29255421_SNP [dm6]	T	C	1.964e^-5	0.931	UTR_5_PRIME stg UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15513477	3L_15513477_DEL [dm3] 3L_15520377_DEL [dm6]	AGAGGAAACTGTG...	A	1.990e^-5	0.931	UPSTREAM mex1 & 1 other EXON CR43159	TF binding site BDTNP1_TFBS_twi
3R	23872856	3R_23872856_SNP [dm3] 3R_28047134_SNP [dm6]	C	T	2.012e^-5	0.931	UPSTREAM CG34362 INTRON CG34362
X	8635052	X_8635052_DEL [dm3] X_8741019_DEL [dm6]	TTGTGTGCAATTTT...	T	2.094e^-5	0.931	INTERGENIC
2R	6308031	2R_6308031_SNP [dm3] 2R_10420526_SNP [dm6]	A	G	2.132e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6625440	X_6625440_SNP [dm3] X_6731407_SNP [dm6]	T	C	2.136e^-5	0.931	UPSTREAM CG3168 INTRON CG3168
3R	3364516	3R_3364516_SNP [dm3] 3R_7538794_SNP [dm6]	A	G	2.167e^-5	0.931	UPSTREAM alpha-Est4 DOWNSTREAM alpha-Est3 INTERGENIC
3L	16758271	3L_16758271_SNP [dm3] 3L_16765171_SNP [dm6]	C	T	2.170e^-5	0.931	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	2.271e^-5	0.931	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6308033	2R_6308033_SNP [dm3] 2R_10420528_SNP [dm6]	C	T	2.289e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18402764	2L_18402764_SNP [dm3] 2L_18402764_SNP [dm6]	A	T	2.302e^-5	0.931	INTERGENIC
2R	6308168	2R_6308168_SNP [dm3] 2R_10420663_SNP [dm6]	A	C	2.326e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	12291226	3L_12291226_DEL [dm3] 3L_12298126_DEL [dm6]	GGG	G	2.330e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24843726	3R_24843726_SNP [dm3] 3R_29018004_SNP [dm6]	G	T	2.426e^-5	0.931	INTRON wat
2R	6758389	2R_6758389_SNP [dm3] 2R_10870884_SNP [dm6]	G	A	2.434e^-5	0.931	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6308014	2R_6308014_SNP [dm3] 2R_10420509_SNP [dm6]	C	T	2.486e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7424737	3L_7424737_INS [dm3] 3L_7431637_INS [dm6]	T	TGTATTA	2.566e^-5	0.931	INTRON CG42458
3L	10732033	3L_10732033_SNP [dm3] 3L_10738933_SNP [dm6]	C	A	2.627e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	2.694e^-5	0.931	INTRON kar	TF binding site mE1_TFBS_cad
2R	6308167	2R_6308167_SNP [dm3] 2R_10420662_SNP [dm6]	T	G	2.704e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	10368231	2R_10368231_SNP [dm3] 2R_14480726_SNP [dm6]	A	T	2.832e^-5	0.931	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10112193	2R_10112193_SNP [dm3] 2R_14224688_SNP [dm6]	G	T	2.869e^-5	0.931	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23971501	3R_23971501_SNP [dm3] 3R_28145779_SNP [dm6]	T	A	2.876e^-5	0.931	INTERGENIC
2R	6307285	2R_6307285_INS [dm3] 2R_10419780_INS [dm6]	T	TT	2.951e^-5	0.931	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	549339	2L_549339_SNP [dm3] 2L_549339_SNP [dm6]	C	T	3.095e^-5	0.931	UTR_5_PRIME Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3923976	3L_3923976_SNP [dm3] 3L_3923976_SNP [dm6]	G	A	3.192e^-5	0.931	INTRON Eip63F-1
3R	15115482	3R_15115482_DEL [dm3] 3R_19289760_DEL [dm6]	GCT	G	3.231e^-5	0.931	DOWNSTREAM CR43451 INTERGENIC
3L	15518673	3L_15518673_SNP [dm3] 3L_15525573_SNP [dm6]	G	A	3.327e^-5	0.931	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
2L	18608603	2L_18608603_SNP [dm3] 2L_18608603_SNP [dm6]	G	A	3.475e^-5	0.931	SYNONYMOUS_CODING CG10333 DOWNSTREAM Atac2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12482424	3L_12482424_SNP [dm3] 3L_12489324_SNP [dm6]	G	A	3.530e^-5	0.931	UPSTREAM CR45681 INTRON CG10660
3R	25107982	3R_25107982_SNP [dm3] 3R_29282260_SNP [dm6]	C	T	3.572e^-5	0.931	INTERGENIC	regulatory region REDfly_CRMs
2R	6308069	2R_6308069_SNP [dm3] 2R_10420564_SNP [dm6]	A	C	3.584e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6304459	2R_6304459_SNP [dm3] 2R_10416954_SNP [dm6]	C	A	3.674e^-5	0.931	UTR_5_PRIME CG42732	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	14425360	2R_14425360_SNP [dm3] 2R_18537855_SNP [dm6]	C	T	3.683e^-5	0.931	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5700310	3R_5700310_DEL [dm3] 3R_9874588_DEL [dm6]	GAG	G	3.743e^-5	0.931	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20696518	2L_20696518_SNP [dm3] 2L_20696518_SNP [dm6]	A	C	3.939e^-5	0.931	INTRON Hr38
X	17195478	X_17195478_SNP [dm3] X_17301445_SNP [dm6]	G	T	3.943e^-5	0.931	UTR_5_PRIME Fim UPSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15262039	3L_15262039_SNP [dm3] 3L_15268939_SNP [dm6]	T	C	3.946e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	11011554	3L_11011554_SNP [dm3] 3L_11018454_SNP [dm6]	T	C	3.951e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8108735	3R_8108735_SNP [dm3] 3R_12283013_SNP [dm6]	A	G	3.958e^-5	0.931	INTRON svp
3L	7448754	3L_7448754_SNP [dm3] 3L_7455654_SNP [dm6]	C	T	3.959e^-5	0.931	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	7425079	3L_7425079_SNP [dm3] 3L_7431979_SNP [dm6]	G	T	3.960e^-5	0.931	INTRON CG42458
2L	18955125	2L_18955125_SNP [dm3] 2L_18955125_SNP [dm6]	A	T	4.053e^-5	0.931	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	10079180	3R_10079180_SNP [dm3] 3R_14253458_SNP [dm6]	T	C	4.171e^-5	0.931	INTRON Aats-met
3R	23971583	3R_23971583_SNP [dm3] 3R_28145861_SNP [dm6]	G	A	4.173e^-5	0.931	INTERGENIC
2R	10112136	2R_10112136_SNP [dm3] 2R_14224631_SNP [dm6]	T	A	4.225e^-5	0.931	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15292646	3L_15292646_SNP [dm3] 3L_15299546_SNP [dm6]	C	A	4.389e^-5	0.931	SYNONYMOUS_CODING Best4
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	4.414e^-5	0.931	INTRON H2.0
X	17007559	X_17007559_SNP [dm3] X_17113526_SNP [dm6]	G	C	4.431e^-5	0.931	INTRON CG5004
2R	6304547	2R_6304547_SNP [dm3] 2R_10417042_SNP [dm6]	A	G	4.537e^-5	0.931	UPSTREAM CG42732 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	6302928	X_6302928_SNP [dm3] X_6408895_SNP [dm6]	C	T	4.539e^-5	0.931	INTERGENIC
3L	3908469	3L_3908469_SNP [dm3] 3L_3908469_SNP [dm6]	C	T	4.576e^-5	0.931	SYNONYMOUS_CODING mge UTR_3_PRIME mge DOWNSTREAM ida
2R	6940783	2R_6940783_SNP [dm3] 2R_11053278_SNP [dm6]	C	G	4.584e^-5	0.931	INTRON luna
2R	10071218	2R_10071218_SNP [dm3] 2R_14183713_SNP [dm6]	T	A	4.633e^-5	0.931	DOWNSTREAM cg INTERGENIC
2R	6894859	2R_6894859_SNP [dm3] 2R_11007354_SNP [dm6]	T	G	4.651e^-5	0.931	INTRON luna
2R	10109876	2R_10109876_SNP [dm3] 2R_14222371_SNP [dm6]	T	A	4.651e^-5	0.931	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2659303	3L_2659303_SNP [dm3] 3L_2659303_SNP [dm6]	T	A	4.701e^-5	0.931	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5515240	2L_5515240_SNP [dm3] 2L_5515240_SNP [dm6]	T	C	4.758e^-5	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10506184	3R_10506184_SNP [dm3] 3R_14680462_SNP [dm6]	C	A	4.780e^-5	0.931	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18954378	2L_18954378_DEL [dm3] 2L_18954378_DEL [dm6]	AACGGTGGA	A	4.808e^-5	0.931	UTR_5_PRIME CG10621 UPSTREAM CR44741
3L	12291467	3L_12291467_SNP [dm3] 3L_12298367_SNP [dm6]	A	G	4.821e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24488980	3R_24488980_SNP [dm3] 3R_28663258_SNP [dm6]	A	G	4.838e^-5	0.931	INTERGENIC
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	4.857e^-5	0.931	UPSTREAM CG6527 INTRON A2bp1
X	19188035	X_19188035_SNP [dm3] X_19294002_SNP [dm6]	G	A	4.887e^-5	0.931	INTRON CG8034
X	14428138	X_14428138_SNP [dm3] X_14534105_SNP [dm6]	C	G	4.894e^-5	0.931	INTERGENIC
2R	15174877	2R_15174877_SNP [dm3] 2R_19287372_SNP [dm6]	T	A	4.906e^-5	0.931	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23022773	3R_23022773_SNP [dm3] 3R_27197051_SNP [dm6]	A	G	5.044e^-5	0.931	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3924071	3L_3924071_SNP [dm3] 3L_3924071_SNP [dm6]	A	C	5.090e^-5	0.931	INTRON Eip63F-1
3R	27027305	3R_27027305_SNP [dm3] 3R_31201583_SNP [dm6]	C	T	5.092e^-5	0.931	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_cad
3L	15292667	3L_15292667_SNP [dm3] 3L_15299567_SNP [dm6]	C	T	5.099e^-5	0.931	SYNONYMOUS_CODING Best4
3R	25080757	3R_25080757_SNP [dm3] 3R_29255035_SNP [dm6]	T	A	5.126e^-5	0.931	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10532702	2R_10532702_INS [dm3] 2R_14645197_INS [dm6]	T	TA	5.192e^-5	0.931	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17254383	2L_17254383_SNP [dm3] 2L_17254383_SNP [dm6]	A	G	5.193e^-5	0.931	INTRON beat-IIIc
2R	18526885	2R_18526885_SNP [dm3] 2R_22639380_SNP [dm6]	C	T	5.220e^-5	0.931	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	15894447	3L_15894447_SNP [dm3] 3L_15901347_SNP [dm6]	G	A	5.250e^-5	0.931	UTR_3_PRIME sff
3R	21237122	3R_21237122_SNP [dm3] 3R_25411400_SNP [dm6]	T	A	5.258e^-5	0.931	INTRON Fur1
3R	16386354	3R_16386354_INS [dm3] 3R_20560632_INS [dm6]	T	TATT	5.357e^-5	0.931	UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6428656	2R_6428656_SNP [dm3] 2R_10541151_SNP [dm6]	T	C	5.412e^-5	0.931	UPSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	5.437e^-5	0.931	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	16745214	3R_16745214_SNP [dm3] 3R_20919492_SNP [dm6]	C	T	5.440e^-5	0.931	INTRON CG31191 & 1 other
2L	11471110	2L_11471110_SNP [dm3] 2L_11471110_SNP [dm6]	G	A	5.495e^-5	0.931	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16386359	3R_16386359_SNP [dm3] 3R_20560637_SNP [dm6]	A	T	5.535e^-5	0.931	UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	17298064	X_17298064_SNP [dm3] X_17404031_SNP [dm6]	A	T	5.631e^-5	0.931	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	6308008	2R_6308008_SNP [dm3] 2R_10420503_SNP [dm6]	T	G	5.649e^-5	0.931	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16386365	3R_16386365_SNP [dm3] 3R_20560643_SNP [dm6]	C	A	5.656e^-5	0.931	UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16406523	3R_16406523_SNP [dm3] 3R_20580801_SNP [dm6]	T	C	5.802e^-5	0.934	NON_SYNONYMOUS_CODING CG34008 UPSTREAM EloB DOWNSTREAM Srp14 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23858497	3R_23858497_SNP [dm3] 3R_28032775_SNP [dm6]	C	T	5.808e^-5	0.934	INTRON CG34362
2R	15174899	2R_15174899_SNP [dm3] 2R_19287394_SNP [dm6]	T	G	5.839e^-5	0.934	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	5.921e^-5	0.934	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12100786	2L_12100786_SNP [dm3] 2L_12100786_SNP [dm6]	T	A	5.951e^-5	0.934	UTR_3_PRIME Ced-12 & 1 other
3L	15519246	3L_15519246_SNP [dm3] 3L_15526146_SNP [dm6]	T	A	6.011e^-5	0.934	UPSTREAM CG33986 DOWNSTREAM CG42729 INTRON CG33985
3L	15518264	3L_15518264_INS [dm3] 3L_15525164_INS [dm6]	A	AA	6.124e^-5	0.934	DOWNSTREAM CG33985 INTRON CG33986	TF binding site mE1_TFBS_sens
2L	15854659	2L_15854659_SNP [dm3] 2L_15854659_SNP [dm6]	T	C	6.137e^-5	0.934	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
3R	23968207	3R_23968207_SNP [dm3] 3R_28142485_SNP [dm6]	C	T	6.171e^-5	0.934	INTERGENIC
2R	12104729	2R_12104729_SNP [dm3] 2R_16217224_SNP [dm6]	G	C	6.284e^-5	0.934	INTRON mrj
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	6.320e^-5	0.934	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14960413	2L_14960413_SNP [dm3] 2L_14960413_SNP [dm6]	A	T	6.344e^-5	0.934	INTRON CG42313
3L	15886521	3L_15886521_SNP [dm3] 3L_15893421_SNP [dm6]	C	A	6.416e^-5	0.934	INTRON pHCl
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	6.449e^-5	0.934	INTRON sNPF
3R	25171793	3R_25171793_SNP [dm3] 3R_29346071_SNP [dm6]	C	T	6.566e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12283493	3L_12283493_SNP [dm3] 3L_12290393_SNP [dm6]	A	T	6.631e^-5	0.934	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	6577806	3L_6577806_SNP [dm3] 3L_6584706_SNP [dm6]	C	T	6.740e^-5	0.934	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
2L	18331691	2L_18331691_SNP [dm3] 2L_18331691_SNP [dm6]	T	A	6.792e^-5	0.934	INTRON Fas3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	10574907	2R_10574907_SNP [dm3] 2R_14687402_SNP [dm6]	C	T	6.796e^-5	0.934	INTRON mspo
3L	12380453	3L_12380453_SNP [dm3] 3L_12387353_SNP [dm6]	G	A	6.799e^-5	0.934	INTRON Ncc69	TF binding site mE1_TFBS_cnc
2R	20590015	2R_20590015_SNP [dm3] 2R_24702492_SNP [dm6]	C	T	6.813e^-5	0.934	INTRON Mid1
2R	7384368	2R_7384368_SNP [dm3] 2R_11496863_SNP [dm6]	G	A	6.814e^-5	0.934	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7647461	3L_7647461_SNP [dm3] 3L_7654361_SNP [dm6]	A	G	6.951e^-5	0.934	UTR_5_PRIME CG7492 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2403122	3L_2403122_SNP [dm3] 3L_2403122_SNP [dm6]	C	T	7.023e^-5	0.934	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24490876	3R_24490876_SNP [dm3] 3R_28665154_SNP [dm6]	C	T	7.167e^-5	0.934	INTERGENIC
3L	12482460	3L_12482460_INS [dm3] 3L_12489360_INS [dm6]	A	ATACA	7.170e^-5	0.934	UPSTREAM CR45681 INTRON CG10660
3L	7424565	3L_7424565_SNP [dm3] 3L_7431465_SNP [dm6]	C	A	7.173e^-5	0.934	INTRON CG42458
3L	15517675	3L_15517675_SNP [dm3] 3L_15524575_SNP [dm6]	T	C	7.207e^-5	0.934	SYNONYMOUS_CODING CG33986 UPSTREAM CG7945	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	15517975	3L_15517975_SNP [dm3] 3L_15524875_SNP [dm6]	T	G	7.207e^-5	0.934	NON_SYNONYMOUS_CODING CG33986 UPSTREAM CG7945	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15518257	3L_15518257_SNP [dm3] 3L_15525157_SNP [dm6]	C	A	7.207e^-5	0.934	DOWNSTREAM CG33985 INTRON CG33986	TF binding site mE1_TFBS_sens
2L	14960462	2L_14960462_SNP [dm3] 2L_14960462_SNP [dm6]	A	G	7.300e^-5	0.934	INTRON CG42313
3L	15518388	3L_15518388_SNP [dm3] 3L_15525288_SNP [dm6]	A	G	7.320e^-5	0.934	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
3L	13017884	3L_13017884_SNP [dm3] 3L_13024784_SNP [dm6]	A	C	7.340e^-5	0.934	UTR_3_PRIME Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	7.368e^-5	0.934	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6307254	2R_6307254_SNP [dm3] 2R_10419749_SNP [dm6]	A	C	7.434e^-5	0.936	UTR_3_PRIME Prx2540-2 DOWNSTREAM CG11825	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	7.523e^-5	0.941	INTRON Cad87A
X	17297831	X_17297831_SNP [dm3] X_17403798_SNP [dm6]	G	T	7.762e^-5	0.95	DOWNSTREAM B-H1 INTERGENIC
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	7.858e^-5	0.95	INTRON fru
2L	20038760	2L_20038760_SNP [dm3] 2L_20038760_SNP [dm6]	G	A	7.866e^-5	0.95	INTRON sNPF
3R	25081866	3R_25081866_SNP [dm3] 3R_29256144_SNP [dm6]	G	A	7.898e^-5	0.95	UPSTREAM stg & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	9086239	X_9086239_SNP [dm3] X_9192206_SNP [dm6]	C	T	7.909e^-5	0.95	SYNONYMOUS_CODING CG12057 UPSTREAM CG12056	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15783325	2L_15783325_SNP [dm3] 2L_15783325_SNP [dm6]	C	T	7.910e^-5	0.95	UPSTREAM CG18109 INTERGENIC
3L	9306038	3L_9306038_SNP [dm3] 3L_9312938_SNP [dm6]	A	C	7.953e^-5	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15644060	3L_15644060_SNP [dm3] 3L_15650960_SNP [dm6]	T	C	8.058e^-5	0.952	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
3L	4104706	3L_4104706_SNP [dm3] 3L_4104706_SNP [dm6]	A	C	8.192e^-5	0.952	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7448751	3L_7448751_SNP [dm3] 3L_7455651_SNP [dm6]	A	T	8.240e^-5	0.952	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	4600411	3L_4600411_SNP [dm3] 3L_4600411_SNP [dm6]	T	G	8.298e^-5	0.952	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25080698	3R_25080698_SNP [dm3] 3R_29254976_SNP [dm6]	C	T	8.326e^-5	0.952	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11011741	3L_11011741_SNP [dm3] 3L_11018641_SNP [dm6]	T	A	8.339e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12482572	3L_12482572_SNP [dm3] 3L_12489472_SNP [dm6]	G	A	8.478e^-5	0.952	UPSTREAM CR45681 INTRON CG10660
2L	14945394	2L_14945394_SNP [dm3] 2L_14945394_SNP [dm6]	G	C	8.499e^-5	0.952	INTRON CG42313
3R	23858598	3R_23858598_SNP [dm3] 3R_28032876_SNP [dm6]	A	G	8.635e^-5	0.952	INTRON CG34362
3L	15517703	3L_15517703_SNP [dm3] 3L_15524603_SNP [dm6]	C	T	8.638e^-5	0.952	NON_SYNONYMOUS_CODING CG33986 UPSTREAM CG7945	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19348259	2R_19348259_SNP [dm3] 2R_23460736_SNP [dm6]	A	G	8.687e^-5	0.952	INTRON CG43795
3L	16950100	3L_16950100_SNP [dm3] 3L_16957000_SNP [dm6]	T	C	8.782e^-5	0.952	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2L	14920873	2L_14920873_SNP [dm3] 2L_14920873_SNP [dm6]	C	A	8.791e^-5	0.952	INTRON CG42313
2L	9970691	2L_9970691_SNP [dm3] 2L_9970691_SNP [dm6]	T	C	8.810e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2484950	2R_2484950_SNP [dm3] 2R_6597445_SNP [dm6]	T	A	8.814e^-5	0.952	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14081376	3R_14081376_SNP [dm3] 3R_18255654_SNP [dm6]	C	A	8.849e^-5	0.952	SYNONYMOUS_CODING moi UTR_5_PRIME Tgs1 UPSTREAM Rpb4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	18738984	2R_18738984_SNP [dm3] 2R_22851461_SNP [dm6]	A	G	8.862e^-5	0.952	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_sens
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	8.882e^-5	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	8.928e^-5	0.952	INTRON Sema-1a
3R	23971547	3R_23971547_SNP [dm3] 3R_28145825_SNP [dm6]	A	C	9.048e^-5	0.959	INTERGENIC
3L	16930815	3L_16930815_SNP [dm3] 3L_16937715_SNP [dm6]	G	A	9.112e^-5	0.96	DOWNSTREAM CG13022 INTERGENIC
3R	23855585	3R_23855585_SNP [dm3] 3R_28029863_SNP [dm6]	A	G	9.158e^-5	0.96	INTRON CG34362
X	3200620	X_3200620_SNP [dm3] X_3306587_SNP [dm6]	G	T	9.602e^-5	0.993	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	9.747e^-5	0.993	INTRON salm
3L	6577970	3L_6577970_SNP [dm3] 3L_6584870_SNP [dm6]	A	T	9.788e^-5	0.993	INTRON CG18769 & 1 other
X	14321441	X_14321441_SNP [dm3] X_14427408_SNP [dm6]	C	G	9.810e^-5	0.993	INTRON dpr8
3R	5438822	3R_5438822_SNP [dm3] 3R_9613100_SNP [dm6]	A	T	9.883e^-5	0.993	INTRON CG8312
X	13032493	X_13032493_SNP [dm3] X_13138460_SNP [dm6]	C	G	9.934e^-5	0.993	UPSTREAM CG32645 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1413669	3L_1413669_SNP [dm3] 3L_1413669_SNP [dm6]	A	T	9.959e^-5	0.993	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7384365	2R_7384365_DEL [dm3] 2R_11496860_DEL [dm6]	AA	A	1.002e^-4	0.993	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18529905	2R_18529905_SNP [dm3] 2R_22642400_SNP [dm6]	C	T	1.005e^-4	0.993	SYNONYMOUS_CODING Ugt58Fa UPSTREAM RpS24	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	885421	3L_885421_SNP [dm3] 3L_885421_SNP [dm6]	T	A	1.012e^-4	0.993	INTRON CG32479
X	2587620	X_2587620_SNP [dm3] X_2693587_SNP [dm6]	G	T	1.013e^-4	0.993	SYNONYMOUS_CODING CG2650 DOWNSTREAM per & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18526690	2R_18526690_SNP [dm3] 2R_22639185_SNP [dm6]	C	T	1.021e^-4	0.993	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	14702307	2L_14702307_INS [dm3] 2L_14702307_INS [dm6]	C	CTGACTGGCGAGGC...	1.022e^-4	0.993	INTERGENIC
3L	15391293	3L_15391293_DEL [dm3] 3L_15398193_DEL [dm6]	GG	G	1.028e^-4	0.993	INTERGENIC
2R	6429050	2R_6429050_SNP [dm3] 2R_10541545_SNP [dm6]	G	A	1.030e^-4	0.993	UTR_5_PRIME lola UPSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9809329	2R_9809329_SNP [dm3] 2R_13921824_SNP [dm6]	T	C	1.040e^-4	0.993	SYNONYMOUS_CODING shot INTRON shot
2R	10389895	2R_10389895_SNP [dm3] 2R_14502390_SNP [dm6]	C	T	1.042e^-4	0.993	SYNONYMOUS_CODING Cpsf160	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23858540	3R_23858540_SNP [dm3] 3R_28032818_SNP [dm6]	G	A	1.043e^-4	0.993	INTRON CG34362
X	17297884	X_17297884_SNP [dm3] X_17403851_SNP [dm6]	G	A	1.085e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	6547468	3L_6547468_SNP [dm3] 3L_6554368_SNP [dm6]	G	T	1.095e^-4	1	INTRON CG18769
3L	11011540	3L_11011540_SNP [dm3] 3L_11018440_SNP [dm6]	C	T	1.103e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21933301	3R_21933301_SNP [dm3] 3R_26107579_SNP [dm6]	G	C	1.108e^-4	1	SPLICE_SITE_REGION CG31324 INTRON CG31324
3R	2811005	3R_2811005_SNP [dm3] 3R_6985283_SNP [dm6]	T	C	1.114e^-4	1	INTRON Antp
2R	18522005	2R_18522005_SNP [dm3] 2R_22634500_SNP [dm6]	C	T	1.120e^-4	1	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16949938	3L_16949938_SNP [dm3] 3L_16956838_SNP [dm6]	G	A	1.135e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2R	13664846	2R_13664846_SNP [dm3] 2R_17777341_SNP [dm6]	G	A	1.135e^-4	1	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad
2L	8887407	2L_8887407_SNP [dm3] 2L_8887407_SNP [dm6]	T	A	1.141e^-4	1	EXON CR44415	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	19666257	2R_19666257_SNP [dm3] 2R_23778734_SNP [dm6]	C	T	1.146e^-4	1	INTRON CG9850
2L	14732824	2L_14732824_SNP [dm3] 2L_14732824_SNP [dm6]	C	T	1.147e^-4	1	EXON CR44857
2L	2087572	2L_2087572_SNP [dm3] 2L_2087572_SNP [dm6]	A	T	1.148e^-4	1	INTRON dpr3
2R	10994876	2R_10994876_SNP [dm3] 2R_15107371_SNP [dm6]	G	C	1.149e^-4	1	INTERGENIC
3R	15125377	3R_15125377_SNP [dm3] 3R_19299655_SNP [dm6]	G	A	1.158e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
X	7007598	X_7007598_SNP [dm3] X_7113565_SNP [dm6]	A	G	1.159e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11462027	X_11462027_SNP [dm3] X_11567994_SNP [dm6]	C	T	1.168e^-4	1	SYNONYMOUS_CODING RpII215	TF binding site mE1_TFBS_sens
3L	4290433	3L_4290433_SNP [dm3] 3L_4290433_SNP [dm6]	G	A	1.172e^-4	1	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	17279077	3R_17279077_SNP [dm3] 3R_21453355_SNP [dm6]	T	A	1.180e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3914446	3L_3914446_SNP [dm3] 3L_3914446_SNP [dm6]	A	G	1.188e^-4	1	INTRON Eip63F-1
3R	5422478	3R_5422478_SNP [dm3] 3R_9596756_SNP [dm6]	T	A	1.192e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20294312	2R_20294312_SNP [dm3] 2R_24406789_SNP [dm6]	G	A	1.193e^-4	1	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
X	16224679	X_16224679_SNP [dm3] X_16330646_SNP [dm6]	T	G	1.197e^-4	1	DOWNSTREAM CG9921 INTRON CG9919	TF binding site BDTNP1_TFBS_dl
X	5704062	X_5704062_SNP [dm3] X_5810029_SNP [dm6]	C	A	1.201e^-4	1	NON_SYNONYMOUS_CODING Prosbeta2R1 UPSTREAM CR45529
3R	8036141	3R_8036141_SNP [dm3] 3R_12210419_SNP [dm6]	A	G	1.202e^-4	1	UPSTREAM CG4830 INTERGENIC
3R	18167226	3R_18167226_SNP [dm3] 3R_22341504_SNP [dm6]	G	A	1.204e^-4	1	INTRON CG5386
3L	10184546	3L_10184546_SNP [dm3] 3L_10191446_SNP [dm6]	A	C	1.206e^-4	1	INTRON ect
2L	18398495	2L_18398495_SNP [dm3] 2L_18398495_SNP [dm6]	C	G	1.213e^-4	1	INTERGENIC
3L	18365880	3L_18365880_DEL [dm3] 3L_18372780_DEL [dm6]	GAATTTCTG	A	1.223e^-4	1	INTERGENIC
3R	20913845	3R_20913845_SNP [dm3] 3R_25088123_SNP [dm6]	A	G	1.229e^-4	1	INTERGENIC
3L	11253610	3L_11253610_SNP [dm3] 3L_11260510_SNP [dm6]	C	T	1.242e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	9275721	3R_9275721_SNP [dm3] 3R_13449999_SNP [dm6]	G	A	1.244e^-4	1	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	10389940	2R_10389940_SNP [dm3] 2R_14502435_SNP [dm6]	C	A	1.245e^-4	1	SYNONYMOUS_CODING Cpsf160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7424563	3L_7424563_SNP [dm3] 3L_7431463_SNP [dm6]	T	A	1.250e^-4	1	INTRON CG42458
2L	14944137	2L_14944137_SNP [dm3] 2L_14944137_SNP [dm6]	T	C	1.253e^-4	1	INTRON CG42313
2L	14930617	2L_14930617_INS [dm3] 2L_14930617_INS [dm6]	G	GCCTGG	1.257e^-4	1	DOWNSTREAM CG3491 INTRON CG42313
3R	6509259	3R_6509259_SNP [dm3] 3R_10683537_SNP [dm6]	A	C	1.259e^-4	1	INTRON CR44230
3R	15152262	3R_15152262_SNP [dm3] 3R_19326540_SNP [dm6]	C	T	1.261e^-4	1	UPSTREAM Dl DOWNSTREAM CR44175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	15181873	2R_15181873_SNP [dm3] 2R_19294368_SNP [dm6]	A	G	1.271e^-4	1	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10069592	2R_10069592_SNP [dm3] 2R_14182087_SNP [dm6]	T	C	1.276e^-4	1	UTR_3_PRIME cg
3L	9163588	3L_9163588_SNP [dm3] 3L_9170488_SNP [dm6]	T	A	1.281e^-4	1	INTRON Rdl
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	1.294e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11900600	X_11900600_SNP [dm3] X_12006567_SNP [dm6]	T	C	1.300e^-4	1	UPSTREAM CG1806 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19348263	2R_19348263_SNP [dm3] 2R_23460740_SNP [dm6]	A	G	1.314e^-4	1	INTRON CG43795
X	5219038	X_5219038_SNP [dm3] X_5325005_SNP [dm6]	T	C	1.324e^-4	1	SYNONYMOUS_CODING Mcm3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	1.328e^-4	1	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	1544817	X_1544817_SNP [dm3] X_1650784_SNP [dm6]	C	T	1.334e^-4	1	INTRON Mur2B & 1 other
2L	18281761	2L_18281761_SNP [dm3] 2L_18281761_SNP [dm6]	T	A	1.334e^-4	1	INTERGENIC
2R	6308182	2R_6308182_SNP [dm3] 2R_10420677_SNP [dm6]	G	A	1.335e^-4	1	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	11472634	2L_11472634_INS [dm3] 2L_11472634_INS [dm6]	T	TG	1.342e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11018664	3L_11018664_SNP [dm3] 3L_11025564_SNP [dm6]	C	G	1.349e^-4	1	NON_SYNONYMOUS_CODING CG32079 DOWNSTREAM Fad2
2R	6305385	2R_6305385_SNP [dm3] 2R_10417880_SNP [dm6]	G	T	1.356e^-4	1	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9856857	3L_9856857_SNP [dm3] 3L_9863757_SNP [dm6]	A	T	1.363e^-4	1	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11930507	2L_11930507_SNP [dm3] 2L_11930507_SNP [dm6]	C	T	1.367e^-4	1	INTERGENIC
X	13236072	X_13236072_SNP [dm3] X_13342039_SNP [dm6]	T	C	1.370e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14919072	2L_14919072_SNP [dm3] 2L_14919072_SNP [dm6]	C	T	1.388e^-4	1	INTRON CG42313
X	8117631	X_8117631_INS [dm3] X_8223598_INS [dm6]	T	TATTT	1.388e^-4	1	INTRON sdt	TF binding site mE1_TFBS_bab1
3R	17279360	3R_17279360_SNP [dm3] 3R_21453638_SNP [dm6]	C	T	1.389e^-4	1	INTERGENIC
3L	15442591	3L_15442591_SNP [dm3] 3L_15449491_SNP [dm6]	C	G	1.402e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13116603	3L_13116603_SNP [dm3] 3L_13123503_SNP [dm6]	G	T	1.408e^-4	1	INTERGENIC
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.409e^-4	1	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	1.413e^-4	1	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	10184578	3L_10184578_SNP [dm3] 3L_10191478_SNP [dm6]	A	C	1.421e^-4	1	INTRON ect
2R	17791416	2R_17791416_SNP [dm3] 2R_21903911_SNP [dm6]	T	A	1.422e^-4	1	INTRON Fili	TF binding site mE1_TFBS_cad
2L	16592134	2L_16592134_SNP [dm3] 2L_16592134_SNP [dm6]	A	T	1.423e^-4	1	INTRON CG42389	TF binding site mE1_TFBS_cad
3L	20022395	3L_20022395_SNP [dm3] 3L_20029295_SNP [dm6]	A	G	1.444e^-4	1	UPSTREAM CG14184 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1019553	2L_1019553_SNP [dm3] 2L_1019553_SNP [dm6]	C	T	1.444e^-4	1	INTRON IA-2
3L	15447176	3L_15447176_SNP [dm3] 3L_15454076_SNP [dm6]	T	G	1.452e^-4	1	INTERGENIC
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.454e^-4	1	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2L	18402972	2L_18402972_SNP [dm3] 2L_18402972_SNP [dm6]	T	C	1.459e^-4	1	UPSTREAM CR44487 INTERGENIC
3L	4600339	3L_4600339_SNP [dm3] 3L_4600339_SNP [dm6]	C	T	1.483e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14725838	2L_14725838_SNP [dm3] 2L_14725838_SNP [dm6]	T	C	1.483e^-4	1	NON_SYNONYMOUS_CODING CG42685	TF binding site mE1_TFBS_sens
3R	8108330	3R_8108330_SNP [dm3] 3R_12282608_SNP [dm6]	C	T	1.485e^-4	1	INTRON svp
2L	11844835	2L_11844835_SNP [dm3] 2L_11844835_SNP [dm6]	G	C	1.493e^-4	1	DOWNSTREAM CG14933 & 1 other INTRON Pde1c
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	1.500e^-4	1	INTRON dpr10
2R	6305492	2R_6305492_SNP [dm3] 2R_10417987_SNP [dm6]	T	A	1.518e^-4	1	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16726531	3L_16726531_SNP [dm3] 3L_16733431_SNP [dm6]	C	G	1.525e^-4	1	UPSTREAM CG9701 INTERGENIC
2R	9959311	2R_9959311_SNP [dm3] 2R_14071806_SNP [dm6]	A	T	1.527e^-4	1	INTRON Prosap
2L	4974342	2L_4974342_SNP [dm3] 2L_4974342_SNP [dm6]	G	A	1.531e^-4	1	SYNONYMOUS_CODING mRpL28 UPSTREAM l_2_05714 DOWNSTREAM CG14043 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3716539	3L_3716539_SNP [dm3] 3L_3716539_SNP [dm6]	T	A	1.541e^-4	1	UTR_3_PRIME CG32264 DOWNSTREAM CG32264
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	1.543e^-4	1	INTRON fas
2L	9949146	2L_9949146_SNP [dm3] 2L_9949146_SNP [dm6]	T	A	1.543e^-4	1	INTERGENIC
3R	13797439	3R_13797439_SNP [dm3] 3R_17971717_SNP [dm6]	A	T	1.545e^-4	1	INTRON cpo
2R	18738991	2R_18738991_SNP [dm3] 2R_22851468_SNP [dm6]	A	T	1.551e^-4	1	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_sens
3L	4230466	3L_4230466_SNP [dm3] 3L_4230466_SNP [dm6]	G	T	1.563e^-4	1	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	6305493	2R_6305493_SNP [dm3] 2R_10417988_SNP [dm6]	T	C	1.572e^-4	1	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15629477	2L_15629477_SNP [dm3] 2L_15629477_SNP [dm6]	T	A	1.573e^-4	1	SYNONYMOUS_CODING CG7631 UPSTREAM CG18480
X	15265516	X_15265516_SNP [dm3] X_15371483_SNP [dm6]	A	G	1.579e^-4	1	INTRON acj6
3R	22992511	3R_22992511_INS [dm3] 3R_27166789_INS [dm6]	T	TT	1.595e^-4	1	INTRON spn-D	regulatory region REDfly_CRMs
2L	8442292	2L_8442292_SNP [dm3] 2L_8442292_SNP [dm6]	G	A	1.597e^-4	1	SYNONYMOUS_CODING mus201 UPSTREAM CG31897
2L	18331785	2L_18331785_SNP [dm3] 2L_18331785_SNP [dm6]	G	A	1.620e^-4	1	INTRON Fas3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	8377234	2L_8377234_SNP [dm3] 2L_8377234_SNP [dm6]	C	T	1.628e^-4	1	SYNONYMOUS_CODING CG17294 UPSTREAM CG13390	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6279074	3L_6279074_SNP [dm3] 3L_6285974_SNP [dm6]	G	A	1.628e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4511769	2L_4511769_SNP [dm3] 2L_4511769_SNP [dm6]	C	G	1.629e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19348251	2R_19348251_SNP [dm3] 2R_23460728_SNP [dm6]	G	A	1.632e^-4	1	INTRON CG43795
2L	1079393	2L_1079393_SNP [dm3] 2L_1079393_SNP [dm6]	A	G	1.633e^-4	1	SYNONYMOUS_CODING ast	TF binding site mE1_TFBS_sens
2R	12974546	2R_12974546_SNP [dm3] 2R_17087041_SNP [dm6]	A	T	1.635e^-4	1	INTRON CG30460	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	16745633	3R_16745633_SNP [dm3] 3R_20919911_SNP [dm6]	G	A	1.637e^-4	1	INTRON CG31191 & 1 other
X	11465924	X_11465924_SNP [dm3] X_11571891_SNP [dm6]	C	A	1.645e^-4	1	NON_SYNONYMOUS_CODING Kmn1 UPSTREAM CR44266 & 1 other DOWNSTREAM CG11699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15555244	2L_15555244_SNP [dm3] 2L_15555244_SNP [dm6]	G	A	1.647e^-4	1	INTRON kek3
X	9756990	X_9756990_SNP [dm3] X_9862957_SNP [dm6]	A	G	1.655e^-4	1	INTERGENIC
2L	19477988	2L_19477988_INS [dm3] 2L_19477988_INS [dm6]	T	TGCT	1.674e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16161392	2L_16161392_SNP [dm3] 2L_16161392_SNP [dm6]	G	T	1.676e^-4	1	INTERGENIC
2R	15181539	2R_15181539_SNP [dm3] 2R_19294034_SNP [dm6]	G	A	1.680e^-4	1	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12330845	X_12330845_SNP [dm3] X_12436812_SNP [dm6]	A	T	1.683e^-4	1	INTRON Pkcdelta
2R	15002577	2R_15002577_SNP [dm3] 2R_19115072_SNP [dm6]	G	A	1.685e^-4	1	INTRON 5-HT1A
3L	20466959	3L_20466959_SNP [dm3] 3L_20473859_SNP [dm6]	T	C	1.690e^-4	1	UTR_5_PRIME CG5969 UPSTREAM CG32428 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	20045100	2L_20045100_SNP [dm3] 2L_20045100_SNP [dm6]	A	G	1.691e^-4	1	INTRON sNPF	transposable element FlyBase
2R	12969116	2R_12969116_SNP [dm3] 2R_17081611_SNP [dm6]	G	T	1.694e^-4	1	UTR_5_PRIME CG30460
3R	2827225	3R_2827225_SNP [dm3] 3R_7001503_SNP [dm6]	C	T	1.697e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16055067	2L_16055067_SNP [dm3] 2L_16055067_SNP [dm6]	A	G	1.698e^-4	1	INTRON beat-Ia
2L	14945366	2L_14945366_SNP [dm3] 2L_14945366_SNP [dm6]	T	G	1.700e^-4	1	INTRON CG42313
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	1.709e^-4	1	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20022386	3L_20022386_SNP [dm3] 3L_20029286_SNP [dm6]	A	T	1.737e^-4	1	UPSTREAM CG14184 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20492268	X_20492268_SNP [dm3] X_20621241_SNP [dm6]	A	G	1.739e^-4	1	INTRON RunxA
2L	3590178	2L_3590178_DEL [dm3] 2L_3590178_DEL [dm6]	CA	C	1.744e^-4	1	EXON CR43823
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	1.752e^-4	1	INTRON fas
3L	13158627	3L_13158627_DEL [dm3] 3L_13165527_DEL [dm6]	TCGCCAT	T	1.757e^-4	1	INTERGENIC
2R	3845586	2R_3845586_SNP [dm3] 2R_7958081_SNP [dm6]	G	C	1.761e^-4	1	NON_SYNONYMOUS_CODING CG2906 DOWNSTREAM CG2915	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	885430	3L_885430_SNP [dm3] 3L_885430_SNP [dm6]	G	A	1.765e^-4	1	INTRON CG32479
X	5328178	X_5328178_SNP [dm3] X_5434145_SNP [dm6]	G	A	1.770e^-4	1	INTRON CR44471
2L	18402998	2L_18402998_SNP [dm3] 2L_18402998_SNP [dm6]	C	T	1.772e^-4	1	UPSTREAM CR44487 INTERGENIC
3R	23881593	3R_23881593_SNP [dm3] 3R_28055871_SNP [dm6]	T	A	1.774e^-4	1	INTRON CG34362
3R	14139498	3R_14139498_SNP [dm3] 3R_18313776_SNP [dm6]	A	C	1.774e^-4	1	INTRON PKD
3R	12324642	3R_12324642_SNP [dm3] 3R_16498920_SNP [dm6]	G	T	1.774e^-4	1	NON_SYNONYMOUS_CODING Gr89a DOWNSTREAM decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15516737	3L_15516737_SNP [dm3] 3L_15523637_SNP [dm6]	T	C	1.776e^-4	1	SYNONYMOUS_CODING CG7945 DOWNSTREAM CG33986 INTRON CG7945	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23389469	3R_23389469_DEL [dm3] 3R_27563747_DEL [dm6]	TT	T	1.777e^-4	1	UTR_3_PRIME wdb
2R	9378723	2R_9378723_SNP [dm3] 2R_13491218_SNP [dm6]	G	A	1.796e^-4	1	INTRON bbc
3L	18213961	3L_18213961_SNP [dm3] 3L_18220861_SNP [dm6]	A	C	1.799e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	18064574	3R_18064574_DEL [dm3] 3R_22238852_DEL [dm6]	CC	G	1.799e^-4	1	INTRON SKIP
3R	5490058	3R_5490058_SNP [dm3] 3R_9664336_SNP [dm6]	C	T	1.802e^-4	1	INTRON CG9492
3L	7623641	3L_7623641_SNP [dm3] 3L_7630541_SNP [dm6]	T	C	1.810e^-4	1	INTRON CG33275
3R	13260282	3R_13260282_SNP [dm3] 3R_17434560_SNP [dm6]	T	G	1.817e^-4	1	UPSTREAM CG44090 INTRON CG5873
2R	11671585	2R_11671585_SNP [dm3] 2R_15784080_SNP [dm6]	G	T	1.822e^-4	1	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10368233	2R_10368233_SNP [dm3] 2R_14480728_SNP [dm6]	A	C	1.830e^-4	1	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	5274160	3L_5274160_SNP [dm3] 3L_5281060_SNP [dm6]	G	T	1.832e^-4	1	INTERGENIC
2L	18927591	2L_18927591_SNP [dm3] 2L_18927591_SNP [dm6]	A	C	1.838e^-4	1	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	1.838e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21505399	X_21505399_SNP [dm3] X_21634372_SNP [dm6]	G	T	1.839e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	20301719	2R_20301719_SNP [dm3] 2R_24414196_SNP [dm6]	T	G	1.841e^-4	1	UTR_5_PRIME CG45069 UTR_3_PRIME CG45068 UPSTREAM CG45069
3L	5356777	3L_5356777_SNP [dm3] 3L_5363677_SNP [dm6]	A	G	1.844e^-4	1	UTR_3_PRIME Uev1A DOWNSTREAM CG4769
3R	13799345	3R_13799345_SNP [dm3] 3R_17973623_SNP [dm6]	A	G	1.844e^-4	1	INTRON cpo
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	1.854e^-4	1	INTERGENIC
3L	1413663	3L_1413663_SNP [dm3] 3L_1413663_SNP [dm6]	A	C	1.855e^-4	1	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10584130	2R_10584130_SNP [dm3] 2R_14696625_SNP [dm6]	C	G	1.867e^-4	1	INTRON mspo
3R	17279197	3R_17279197_SNP [dm3] 3R_21453475_SNP [dm6]	T	C	1.871e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	3416849	X_3416849_SNP [dm3] X_3522816_SNP [dm6]	G	A	1.874e^-4	1	DOWNSTREAM CR44999 INTRON CG32791
2R	6307267	2R_6307267_SNP [dm3] 2R_10419762_SNP [dm6]	A	G	1.875e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13488512	2R_13488512_SNP [dm3] 2R_17601007_SNP [dm6]	C	T	1.884e^-4	1	SYNONYMOUS_CODING lack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6307302	2R_6307302_SNP [dm3] 2R_10419797_SNP [dm6]	G	C	1.888e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14644330	3L_14644330_SNP [dm3] 3L_14651230_SNP [dm6]	A	C	1.894e^-4	1	INTRON dlp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	1.895e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23858606	3R_23858606_SNP [dm3] 3R_28032884_SNP [dm6]	C	T	1.905e^-4	1	INTRON CG34362
3R	24488965	3R_24488965_SNP [dm3] 3R_28663243_SNP [dm6]	G	C	1.907e^-4	1	INTERGENIC
2R	20501638	2R_20501638_DEL [dm3] 2R_24614115_DEL [dm6]	TATGGAC	G	1.912e^-4	1	DOWNSTREAM CG3608 INTRON CG4741
3L	16739340	3L_16739340_SNP [dm3] 3L_16746240_SNP [dm6]	C	G	1.916e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	14342349	3R_14342349_SNP [dm3] 3R_18516627_SNP [dm6]	G	A	1.919e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	9411323	2R_9411323_SNP [dm3] 2R_13523818_SNP [dm6]	A	T	1.919e^-4	1	DOWNSTREAM CG13331 INTRON Vmat
X	3915416	X_3915416_SNP [dm3] X_4021383_SNP [dm6]	C	T	1.922e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12100737	2L_12100737_SNP [dm3] 2L_12100737_SNP [dm6]	T	G	1.927e^-4	1	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
2R	15181802	2R_15181802_SNP [dm3] 2R_19294297_SNP [dm6]	G	T	1.928e^-4	1	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25080486	3R_25080486_SNP [dm3] 3R_29254764_SNP [dm6]	G	T	1.938e^-4	1	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24481769	3R_24481769_SNP [dm3] 3R_28656047_SNP [dm6]	T	A	1.941e^-4	1	INTERGENIC
3L	15512666	3L_15512666_SNP [dm3] 3L_15519566_SNP [dm6]	A	T	1.956e^-4	1	UTR_5_PRIME mex1 UPSTREAM mex1 DOWNSTREAM CR43159
X	6825966	X_6825966_SNP [dm3] X_6931933_SNP [dm6]	A	G	1.969e^-4	1	INTRON CG14431
2L	3947580	2L_3947580_SNP [dm3] 2L_3947580_SNP [dm6]	A	G	1.971e^-4	1	INTRON fred
2R	13105920	2R_13105920_INS [dm3] 2R_17218415_INS [dm6]	T	TT	1.971e^-4	1	INTRON mbl
3R	16386382	3R_16386382_SNP [dm3] 3R_20560660_SNP [dm6]	A	C	1.972e^-4	1	UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	13333303	X_13333303_SNP [dm3] X_13439270_SNP [dm6]	A	T	1.975e^-4	1	INTERGENIC
2R	11432996	2R_11432996_SNP [dm3] 2R_15545491_SNP [dm6]	C	T	1.981e^-4	1	SYNONYMOUS_CODING CG8192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10913935	3L_10913935_SNP [dm3] 3L_10920835_SNP [dm6]	C	T	1.986e^-4	1	INTERGENIC
2R	14884638	2R_14884638_SNP [dm3] 2R_18997133_SNP [dm6]	T	G	1.989e^-4	1	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad
2R	6060864	2R_6060864_SNP [dm3] 2R_10173359_SNP [dm6]	T	G	1.996e^-4	1	INTRON KCNQ
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	2.001e^-4	1	SYNONYMOUS_CODING pps
2R	15181823	2R_15181823_SNP [dm3] 2R_19294318_SNP [dm6]	T	C	2.006e^-4	1	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17688924	3R_17688924_SNP [dm3] 3R_21863202_SNP [dm6]	A	C	2.016e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9290306	X_9290306_SNP [dm3] X_9396273_SNP [dm6]	C	T	2.018e^-4	1	INTRON mgl
3R	5422476	3R_5422476_SNP [dm3] 3R_9596754_SNP [dm6]	C	T	2.023e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4110035	3L_4110035_SNP [dm3] 3L_4110035_SNP [dm6]	G	A	2.034e^-4	1	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3339613	X_3339613_INS [dm3] X_3445580_INS [dm6]	T	TTTTT	2.040e^-4	1	UPSTREAM CG12535 INTRON CR44999 & 1 other
3L	16870282	3L_16870282_SNP [dm3] 3L_16877182_SNP [dm6]	T	A	2.041e^-4	1	UPSTREAM CG32170 INTRON Lmpt	TF binding site mE1_TFBS_cad
2R	7384360	2R_7384360_SNP [dm3] 2R_11496855_SNP [dm6]	T	G	2.050e^-4	1	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7384361	2R_7384361_SNP [dm3] 2R_11496856_SNP [dm6]	T	C	2.050e^-4	1	INTRON inv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5196999	3L_5196999_SNP [dm3] 3L_5203899_SNP [dm6]	A	C	2.052e^-4	1	INTRON shep
2R	16368090	2R_16368090_SNP [dm3] 2R_20480585_SNP [dm6]	G	A	2.056e^-4	1	INTERGENIC
3R	16332019	3R_16332019_SNP [dm3] 3R_20506297_SNP [dm6]	G	C	2.058e^-4	1	DOWNSTREAM Or92a INTERGENIC
2R	10191697	2R_10191697_SNP [dm3] 2R_14304192_SNP [dm6]	T	C	2.097e^-4	1	INTERGENIC
3R	15127649	3R_15127649_SNP [dm3] 3R_19301927_SNP [dm6]	C	A	2.098e^-4	1	DOWNSTREAM Dl INTERGENIC
2R	5085551	2R_5085551_SNP [dm3] 2R_9198046_SNP [dm6]	T	C	2.111e^-4	1	INTRON unpg
3R	17968709	3R_17968709_SNP [dm3] 3R_22142987_SNP [dm6]	A	G	2.117e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12404856	2L_12404856_SNP [dm3] 2L_12404856_SNP [dm6]	T	G	2.117e^-4	1	UPSTREAM vir-1 INTRON vir-1
3L	18382524	3L_18382524_SNP [dm3] 3L_18389424_SNP [dm6]	T	C	2.121e^-4	1	INTERGENIC
3R	5490418	3R_5490418_SNP [dm3] 3R_9664696_SNP [dm6]	C	A	2.123e^-4	1	SYNONYMOUS_CODING CG9492
2L	16835710	2L_16835710_SNP [dm3] 2L_16835710_SNP [dm6]	C	A	2.134e^-4	1	NON_SYNONYMOUS_CODING CG13283
3L	15262312	3L_15262312_SNP [dm3] 3L_15269212_SNP [dm6]	T	A	2.134e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	15262319	3L_15262319_SNP [dm3] 3L_15269219_SNP [dm6]	C	G	2.134e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5197000	3L_5197000_SNP [dm3] 3L_5203900_SNP [dm6]	A	G	2.136e^-4	1	INTRON shep
3R	19303964	3R_19303964_SNP [dm3] 3R_23478242_SNP [dm6]	T	A	2.136e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15516433	3L_15516433_SNP [dm3] 3L_15523333_SNP [dm6]	A	T	2.154e^-4	1	UTR_5_PRIME CG7945 DOWNSTREAM CG33986 INTRON CG7945
X	12331119	X_12331119_SNP [dm3] X_12437086_SNP [dm6]	C	G	2.159e^-4	1	INTRON Pkcdelta
X	19777797	X_19777797_INS [dm3] X_19883764_INS [dm6]	C	CATAC	2.170e^-4	1	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	17297834	X_17297834_SNP [dm3] X_17403801_SNP [dm6]	G	T	2.175e^-4	1	DOWNSTREAM B-H1 INTERGENIC
2R	12969117	2R_12969117_SNP [dm3] 2R_17081612_SNP [dm6]	G	T	2.180e^-4	1	UTR_5_PRIME CG30460
X	17192620	X_17192620_SNP [dm3] X_17298587_SNP [dm6]	G	A	2.182e^-4	1	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5708466	X_5708466_INS [dm3] X_5814433_INS [dm6]	C	CGC	2.184e^-4	1	DOWNSTREAM CG15766 INTERGENIC
X	17298056	X_17298056_INS [dm3] X_17404023_INS [dm6]	A	ACATA	2.185e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17298157	X_17298157_SNP [dm3] X_17404124_SNP [dm6]	C	T	2.185e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	20042586	2L_20042586_SNP [dm3] 2L_20042586_SNP [dm6]	A	T	2.202e^-4	1	INTRON sNPF
3R	16039754	3R_16039754_SNP [dm3] 3R_20214032_SNP [dm6]	G	A	2.206e^-4	1	INTRON Nlg4
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	2.209e^-4	1	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23389460	3R_23389460_DEL [dm3] 3R_27563738_DEL [dm6]	CATGC	C	2.214e^-4	1	UTR_3_PRIME wdb
3L	13249808	3L_13249808_SNP [dm3] 3L_13256708_SNP [dm6]	G	T	2.216e^-4	1	INTRON caps
3R	16554866	3R_16554866_SNP [dm3] 3R_20729144_SNP [dm6]	C	T	2.225e^-4	1	INTERGENIC
3R	16330747	3R_16330747_SNP [dm3] 3R_20505025_SNP [dm6]	G	A	2.226e^-4	1	SYNONYMOUS_CODING Or92a
3L	880466	3L_880466_SNP [dm3] 3L_880466_SNP [dm6]	G	A	2.244e^-4	1	SYNONYMOUS_CODING CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	10390028	2R_10390028_INS [dm3] 2R_14502523_INS [dm6]	A	ATAGTCAA	2.252e^-4	1	INTRON Cpsf160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	9084476	X_9084476_SNP [dm3] X_9190443_SNP [dm6]	T	C	2.253e^-4	1	INTRON CG12115
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	2.258e^-4	1	SYNONYMOUS_CODING NaPi-T
X	13300971	X_13300971_SNP [dm3] X_13406938_SNP [dm6]	G	C	2.262e^-4	1	INTRON GstT4
X	10459380	X_10459380_SNP [dm3] X_10565347_SNP [dm6]	A	T	2.270e^-4	1	DOWNSTREAM CG15296 INTRON spri
3L	6568637	3L_6568637_SNP [dm3] 3L_6575537_SNP [dm6]	G	A	2.277e^-4	1	INTRON CG18769 & 1 other
3L	3923702	3L_3923702_SNP [dm3] 3L_3923702_SNP [dm6]	G	A	2.288e^-4	1	INTRON Eip63F-1
3L	13249654	3L_13249654_SNP [dm3] 3L_13256554_SNP [dm6]	G	A	2.291e^-4	1	INTRON caps
3L	12384350	3L_12384350_SNP [dm3] 3L_12391250_SNP [dm6]	G	T	2.293e^-4	1	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17196120	X_17196120_SNP [dm3] X_17302087_SNP [dm6]	G	T	2.300e^-4	1	UPSTREAM CG5445 & 1 other INTRON CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14905217	2L_14905217_SNP [dm3] 2L_14905217_SNP [dm6]	A	G	2.302e^-4	1	INTERGENIC
2L	15735225	2L_15735225_SNP [dm3] 2L_15735225_SNP [dm6]	T	G	2.302e^-4	1	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	2.312e^-4	1	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10191676	2R_10191676_SNP [dm3] 2R_14304171_SNP [dm6]	C	G	2.312e^-4	1	INTERGENIC
3L	11527237	3L_11527237_SNP [dm3] 3L_11534137_SNP [dm6]	C	A	2.316e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11119114	2R_11119114_SNP [dm3] 2R_15231609_SNP [dm6]	C	T	2.317e^-4	1	INTRON Fs EXON CR44370	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	15458628	3L_15458628_SNP [dm3] 3L_15465528_SNP [dm6]	T	A	2.328e^-4	1	INTERGENIC
3L	9548290	3L_9548290_DEL [dm3] 3L_9555190_DEL [dm6]	TTGCATGAAAAT...	T	2.330e^-4	1	INTRON CG42673
2L	11844792	2L_11844792_INS [dm3] 2L_11844792_INS [dm6]	G	GATTCGGG	2.339e^-4	1	DOWNSTREAM CG14933 & 1 other INTRON Pde1c
3L	15293045	3L_15293045_SNP [dm3] 3L_15299945_SNP [dm6]	C	T	2.339e^-4	1	SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
3R	5440611	3R_5440611_SNP [dm3] 3R_9614889_SNP [dm6]	A	G	2.345e^-4	1	INTRON CG8312
2R	2482150	2R_2482150_SNP [dm3] 2R_6594645_SNP [dm6]	T	A	2.351e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	15464792	3R_15464792_SNP [dm3] 3R_19639070_SNP [dm6]	G	A	2.353e^-4	1	SYNONYMOUS_CODING subdued
3L	4600348	3L_4600348_SNP [dm3] 3L_4600348_SNP [dm6]	T	C	2.357e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23873667	3R_23873667_DEL [dm3] 3R_28047945_DEL [dm6]	AAAAG	A	2.360e^-4	1	INTRON CG34362
3L	7424976	3L_7424976_SNP [dm3] 3L_7431876_SNP [dm6]	C	G	2.367e^-4	1	INTRON CG42458
3R	17083743	3R_17083743_SNP [dm3] 3R_21258021_SNP [dm6]	G	A	2.370e^-4	1	INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10622429	2L_10622429_SNP [dm3] 2L_10622429_SNP [dm6]	G	A	2.373e^-4	1	INTRON Trim9
3L	4291306	3L_4291306_SNP [dm3] 3L_4291306_SNP [dm6]	G	A	2.378e^-4	1	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
3L	4172749	3L_4172749_SNP [dm3] 3L_4172749_SNP [dm6]	A	G	2.380e^-4	1	SYNONYMOUS_CODING Ero1L
X	17298063	X_17298063_SNP [dm3] X_17404030_SNP [dm6]	G	T	2.388e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	23036303	3R_23036303_SNP [dm3] 3R_27210581_SNP [dm6]	T	A	2.388e^-4	1	INTERGENIC
2L	18954808	2L_18954808_SNP [dm3] 2L_18954808_SNP [dm6]	A	T	2.395e^-4	1	UPSTREAM CG10621 DOWNSTREAM CG10623 EXON CR44741
2L	7461789	2L_7461789_SNP [dm3] 2L_7461789_SNP [dm6]	T	C	2.399e^-4	1	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8080148	3R_8080148_SNP [dm3] 3R_12254426_SNP [dm6]	T	C	2.402e^-4	1	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17297896	X_17297896_SNP [dm3] X_17403863_SNP [dm6]	A	C	2.406e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	18013608	2R_18013608_SNP [dm3] 2R_22126103_SNP [dm6]	G	A	2.414e^-4	1	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
2R	14870390	2R_14870390_SNP [dm3] 2R_18982885_SNP [dm6]	C	G	2.414e^-4	1	INTERGENIC
X	12092788	X_12092788_SNP [dm3] X_12198755_SNP [dm6]	A	G	2.416e^-4	1	INTRON Ten-a
2R	10070765	2R_10070765_DEL [dm3] 2R_14183260_DEL [dm6]	GG	G	2.420e^-4	1	DOWNSTREAM cg INTERGENIC
2R	13820149	2R_13820149_SNP [dm3] 2R_17932644_SNP [dm6]	T	C	2.420e^-4	1	INTERGENIC
2R	18529869	2R_18529869_SNP [dm3] 2R_22642364_SNP [dm6]	G	A	2.426e^-4	1	SYNONYMOUS_CODING Ugt58Fa UPSTREAM RpS24	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16274865	X_16274865_SNP [dm3] X_16380832_SNP [dm6]	C	T	2.428e^-4	1	SYNONYMOUS_CODING Fur2 UTR_3_PRIME Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20038457	2L_20038457_SNP [dm3] 2L_20038457_SNP [dm6]	C	T	2.432e^-4	1	INTRON sNPF
2L	11934586	2L_11934586_SNP [dm3] 2L_11934586_SNP [dm6]	G	A	2.447e^-4	1	NON_SYNONYMOUS_CODING Or33a
3R	13552247	3R_13552247_SNP [dm3] 3R_17726525_SNP [dm6]	A	C	2.450e^-4	1	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15922920	2L_15922920_SNP [dm3] 2L_15922920_SNP [dm6]	T	A	2.464e^-4	1	UPSTREAM CG4793 INTRON beat-Ib	transposable element FlyBase
2R	19669888	2R_19669888_SNP [dm3] 2R_23782365_SNP [dm6]	C	T	2.467e^-4	1	INTRON CG9850	TF binding site mE1_TFBS_chinmo
3L	1370734	3L_1370734_SNP [dm3] 3L_1370734_SNP [dm6]	C	T	2.471e^-4	1	START_GAINED ru UTR_5_PRIME ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2020727	2L_2020727_SNP [dm3] 2L_2020727_SNP [dm6]	G	A	2.477e^-4	1	INTRON CG4238
2L	12415304	2L_12415304_SNP [dm3] 2L_12415304_SNP [dm6]	T	G	2.491e^-4	1	INTRON vir-1
X	3561432	X_3561432_SNP [dm3] X_3667399_SNP [dm6]	G	A	2.510e^-4	1	UPSTREAM Ilp7 DOWNSTREAM AstA-R1 INTERGENIC
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	2.517e^-4	1	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9970148	2L_9970148_SNP [dm3] 2L_9970148_SNP [dm6]	T	G	2.523e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8085455	3R_8085455_SNP [dm3] 3R_12259733_SNP [dm6]	C	A	2.529e^-4	1	INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	10986155	X_10986155_SNP [dm3] X_11092122_SNP [dm6]	A	G	2.541e^-4	1	UPSTREAM CG2061 DOWNSTREAM CG2076 EXON CR45604
X	5060842	X_5060842_SNP [dm3] X_5166809_SNP [dm6]	G	T	2.545e^-4	1	INTRON rg & 1 other
3L	16906255	3L_16906255_SNP [dm3] 3L_16913155_SNP [dm6]	T	G	2.546e^-4	1	INTRON Lmpt
2R	10324022	2R_10324022_SNP [dm3] 2R_14436517_SNP [dm6]	G	T	2.549e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	756862	2L_756862_SNP [dm3] 2L_756862_SNP [dm6]	G	A	2.550e^-4	1	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20022387	3L_20022387_SNP [dm3] 3L_20029287_SNP [dm6]	A	T	2.561e^-4	1	UPSTREAM CG14184 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16330846	3R_16330846_SNP [dm3] 3R_20505124_SNP [dm6]	A	T	2.566e^-4	1	SYNONYMOUS_CODING Or92a
3L	11329848	3L_11329848_SNP [dm3] 3L_11336748_SNP [dm6]	G	A	2.580e^-4	1	INTERGENIC
3L	15518610	3L_15518610_SNP [dm3] 3L_15525510_SNP [dm6]	G	A	2.582e^-4	1	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
3L	7648401	3L_7648401_SNP [dm3] 3L_7655301_SNP [dm6]	A	G	2.601e^-4	1	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	2.603e^-4	1	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3L	16935829	3L_16935829_SNP [dm3] 3L_16942729_SNP [dm6]	A	G	2.607e^-4	1	UTR_5_PRIME Cpr73D	TF binding site mE1_TFBS_cad
3L	3619621	3L_3619621_SNP [dm3] 3L_3619621_SNP [dm6]	A	G	2.613e^-4	1	DOWNSTREAM CG14974 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3943843	3L_3943843_SNP [dm3] 3L_3943843_SNP [dm6]	C	T	2.615e^-4	1	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	14679851	3L_14679851_DEL [dm3] 3L_14686751_DEL [dm6]	AC	A	2.618e^-4	1	DOWNSTREAM CG5048 INTRON ome
2L	7152397	2L_7152397_SNP [dm3] 2L_7152397_SNP [dm6]	T	C	2.619e^-4	1	INTRON Pvf3
3L	15886465	3L_15886465_SNP [dm3] 3L_15893365_SNP [dm6]	A	T	2.660e^-4	1	INTRON pHCl
X	17196129	X_17196129_SNP [dm3] X_17302096_SNP [dm6]	C	T	2.663e^-4	1	UPSTREAM CG5445 & 1 other INTRON CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16359713	2L_16359713_SNP [dm3] 2L_16359713_SNP [dm6]	C	A	2.673e^-4	1	INTERGENIC
X	17195778	X_17195778_SNP [dm3] X_17301745_SNP [dm6]	G	A	2.681e^-4	1	UTR_5_PRIME Fim UPSTREAM CG5445 INTRON CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
2L	14699820	2L_14699820_SNP [dm3] 2L_14699820_SNP [dm6]	G	A	2.686e^-4	1	INTERGENIC
2R	10456222	2R_10456222_INS [dm3] 2R_14568717_INS [dm6]	T	TGAGAAATT	2.694e^-4	1	INTRON ttv
2R	10190042	2R_10190042_SNP [dm3] 2R_14302537_SNP [dm6]	G	A	2.695e^-4	1	UPSTREAM tej INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5629439	3L_5629439_SNP [dm3] 3L_5636339_SNP [dm6]	G	T	2.697e^-4	1	UTR_5_PRIME Blimp-1 INTRON Blimp-1
3R	16330666	3R_16330666_SNP [dm3] 3R_20504944_SNP [dm6]	T	G	2.704e^-4	1	SYNONYMOUS_CODING Or92a
2L	3942885	2L_3942885_SNP [dm3] 2L_3942885_SNP [dm6]	G	C	2.717e^-4	1	INTRON fred
X	17300696	X_17300696_SNP [dm3] X_17406663_SNP [dm6]	T	A	2.741e^-4	1	INTERGENIC
2L	18038520	2L_18038520_SNP [dm3] 2L_18038520_SNP [dm6]	T	C	2.748e^-4	1	INTRON rdo
3R	3361410	3R_3361410_SNP [dm3] 3R_7535688_SNP [dm6]	G	A	2.751e^-4	1	DOWNSTREAM alpha-Est4 INTRON alpha-Est5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22705989	3R_22705989_SNP [dm3] 3R_26880267_SNP [dm6]	T	G	2.768e^-4	1	SYNONYMOUS_CODING CG5500 INTRON ro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2884526	3L_2884526_SNP [dm3] 3L_2884526_SNP [dm6]	C	T	2.778e^-4	1	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2374490	3R_2374490_SNP [dm3] 3R_6548768_SNP [dm6]	C	A	2.799e^-4	1	UPSTREAM Pif2 INTRON dpr11
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	2.814e^-4	1	INTRON salm
X	7742858	X_7742858_SNP [dm3] X_7848825_SNP [dm6]	G	C	2.815e^-4	1	INTERGENIC
2L	650344	2L_650344_DEL [dm3] 2L_650344_DEL [dm6]	TT	T	2.816e^-4	1	INTRON ds
X	3416178	X_3416178_DEL [dm3] X_3522145_DEL [dm6]	AGAG	A	2.818e^-4	1	INTRON CR44999 & 1 other
2L	16544566	2L_16544566_SNP [dm3] 2L_16544566_SNP [dm6]	A	C	2.822e^-4	1	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	3889181	3L_3889181_DEL [dm3] 3L_3889181_DEL [dm6]	TAC	T	2.822e^-4	1	INTERGENIC
2L	6017023	2L_6017023_SNP [dm3] 2L_6017023_SNP [dm6]	T	C	2.822e^-4	1	INTRON H2.0	TF binding site mE1_TFBS_inv
2R	10368173	2R_10368173_SNP [dm3] 2R_14480668_SNP [dm6]	C	T	2.827e^-4	1	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	8556280	X_8556280_DEL [dm3] X_8662247_DEL [dm6]	CC	T	2.827e^-4	1	INTERGENIC
2R	6307331	2R_6307331_SNP [dm3] 2R_10419826_SNP [dm6]	C	T	2.865e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2791647	2L_2791647_SNP [dm3] 2L_2791647_SNP [dm6]	T	C	2.866e^-4	1	INTRON Syt1
2R	228684	2R_228684_SNP [dm3] 2R_4341179_SNP [dm6]	C	A	2.873e^-4	1	INTRON Gprk1
2R	8876531	2R_8876531_SNP [dm3] 2R_12989026_SNP [dm6]	A	C	2.875e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20036225	3L_20036225_SNP [dm3] 3L_20043125_SNP [dm6]	C	T	2.876e^-4	1	INTERGENIC
2L	20044880	2L_20044880_SNP [dm3] 2L_20044880_SNP [dm6]	T	C	2.880e^-4	1	INTRON sNPF
3L	2286783	3L_2286783_SNP [dm3] 3L_2286783_SNP [dm6]	G	T	2.887e^-4	1	INTRON MsR2
X	13300863	X_13300863_SNP [dm3] X_13406830_SNP [dm6]	A	G	2.905e^-4	1	INTRON GstT4
3R	16039717	3R_16039717_SNP [dm3] 3R_20213995_SNP [dm6]	C	T	2.906e^-4	1	INTRON Nlg4
3R	16330955	3R_16330955_SNP [dm3] 3R_20505233_SNP [dm6]	C	A	2.912e^-4	1	NON_SYNONYMOUS_CODING Or92a
3R	25080671	3R_25080671_SNP [dm3] 3R_29254949_SNP [dm6]	A	G	2.913e^-4	1	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13369853	3L_13369853_SNP [dm3] 3L_13376753_SNP [dm6]	A	C	2.914e^-4	1	INTERGENIC
2L	18613083	2L_18613083_SNP [dm3] 2L_18613083_SNP [dm6]	A	T	2.928e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12290829	3L_12290829_SNP [dm3] 3L_12297729_SNP [dm6]	T	A	2.929e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23108500	3R_23108500_SNP [dm3] 3R_27282778_SNP [dm6]	C	G	2.930e^-4	1	UPSTREAM mrt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7122762	2L_7122762_SNP [dm3] 2L_7122762_SNP [dm6]	G	T	2.944e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl
3R	21601955	3R_21601955_SNP [dm3] 3R_25776233_SNP [dm6]	G	A	2.946e^-4	1	START_GAINED CG17196 UTR_5_PRIME CG17196 UPSTREAM CG17197 & 1 other DOWNSTREAM CG17195
2R	14718822	2R_14718822_SNP [dm3] 2R_18831317_SNP [dm6]	C	A	2.948e^-4	1	INTRON CG15082
2L	581350	2L_581350_SNP [dm3] 2L_581350_SNP [dm6]	C	A	2.952e^-4	1	INTERGENIC
3R	22613881	3R_22613881_SNP [dm3] 3R_26788159_SNP [dm6]	A	T	2.953e^-4	1	INTERGENIC
X	5060908	X_5060908_DEL [dm3] X_5166875_DEL [dm6]	TGTTGTT	T	2.962e^-4	1	INTRON rg & 1 other
X	17298082	X_17298082_SNP [dm3] X_17404049_SNP [dm6]	A	T	2.966e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	11298608	2L_11298608_SNP [dm3] 2L_11298608_SNP [dm6]	A	G	2.975e^-4	1	INTERGENIC
3L	3470254	3L_3470254_DEL [dm3] 3L_3470254_DEL [dm6]	TT	T	2.985e^-4	1	INTRON CG14971
2R	14885709	2R_14885709_SNP [dm3] 2R_18998204_SNP [dm6]	C	T	2.997e^-4	1	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23858575	3R_23858575_SNP [dm3] 3R_28032853_SNP [dm6]	C	T	2.998e^-4	1	INTRON CG34362
X	17297885	X_17297885_INS [dm3] X_17403852_INS [dm6]	A	AA	3.009e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17297905	X_17297905_DEL [dm3] X_17403872_DEL [dm6]	TACAAT	C	3.009e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	14380985	3R_14380985_INS [dm3] 3R_18555263_INS [dm6]	T	TTT	3.017e^-4	1	INTERGENIC
2L	14732338	2L_14732338_INS [dm3] 2L_14732338_INS [dm6]	G	GGAG	3.023e^-4	1	DOWNSTREAM CR44857 INTERGENIC
2R	6307390	2R_6307390_SNP [dm3] 2R_10419885_SNP [dm6]	T	G	3.029e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13797518	3R_13797518_SNP [dm3] 3R_17971796_SNP [dm6]	G	C	3.030e^-4	1	INTRON cpo
2R	10072435	2R_10072435_SNP [dm3] 2R_14184930_SNP [dm6]	G	A	3.037e^-4	1	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16759734	3L_16759734_SNP [dm3] 3L_16766634_SNP [dm6]	T	C	3.038e^-4	1	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6307206	2R_6307206_SNP [dm3] 2R_10419701_SNP [dm6]	T	A	3.050e^-4	1	UTR_3_PRIME Prx2540-2 DOWNSTREAM CG11825	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10337917	2R_10337917_SNP [dm3] 2R_14450412_SNP [dm6]	A	T	3.054e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
X	7691576	X_7691576_SNP [dm3] X_7797543_SNP [dm6]	A	T	3.078e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15171695	2R_15171695_SNP [dm3] 2R_19284190_SNP [dm6]	T	A	3.079e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	16745240	3R_16745240_SNP [dm3] 3R_20919518_SNP [dm6]	T	A	3.081e^-4	1	INTRON CG31191 & 1 other
2R	2563354	2R_2563354_SNP [dm3] 2R_6675849_SNP [dm6]	C	T	3.083e^-4	1	UTR_5_PRIME CG17266 & 1 other UPSTREAM CG17266 DOWNSTREAM PGAP3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	14911072	2L_14911072_SNP [dm3] 2L_14911072_SNP [dm6]	G	A	3.087e^-4	1	INTRON CG42313
3R	1894954	3R_1894954_SNP [dm3] 3R_6069232_SNP [dm6]	T	A	3.088e^-4	1	INTERGENIC
3L	13116862	3L_13116862_SNP [dm3] 3L_13123762_SNP [dm6]	C	T	3.090e^-4	1	INTERGENIC
3R	19728255	3R_19728255_SNP [dm3] 3R_23902533_SNP [dm6]	C	T	3.092e^-4	1	INTRON sba
3L	14581527	3L_14581527_SNP [dm3] 3L_14588427_SNP [dm6]	A	T	3.092e^-4	1	INTRON HGTX
3R	23072989	3R_23072989_SNP [dm3] 3R_27247267_SNP [dm6]	G	T	3.096e^-4	1	SYNONYMOUS_CODING CG5984 DOWNSTREAM CG5987	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4342980	2L_4342980_SNP [dm3] 2L_4342980_SNP [dm6]	G	A	3.100e^-4	1	SYNONYMOUS_CODING Atet UPSTREAM mir-1005	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6307690	2R_6307690_INS [dm3] 2R_10420185_INS [dm6]	A	TT	3.103e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10324024	2R_10324024_SNP [dm3] 2R_14436519_SNP [dm6]	G	C	3.114e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	4417453	3L_4417453_SNP [dm3] 3L_4417453_SNP [dm6]	A	C	3.117e^-4	1	INTRON DOR
3L	15518927	3L_15518927_INS [dm3] 3L_15525827_INS [dm6]	A	ACATGTGACACTTATTGTAA...	3.122e^-4	1	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
2R	17689901	2R_17689901_SNP [dm3] 2R_21802396_SNP [dm6]	T	C	3.127e^-4	1	INTERGENIC
X	7744377	X_7744377_SNP [dm3] X_7850344_SNP [dm6]	T	A	3.137e^-4	1	INTERGENIC
3R	23858539	3R_23858539_SNP [dm3] 3R_28032817_SNP [dm6]	T	G	3.142e^-4	1	INTRON CG34362
2R	9779862	2R_9779862_SNP [dm3] 2R_13892357_SNP [dm6]	T	A	3.145e^-4	1	SYNONYMOUS_CODING shot INTRON shot
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	3.160e^-4	1	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	14960390	2L_14960390_SNP [dm3] 2L_14960390_SNP [dm6]	C	T	3.161e^-4	1	INTRON CG42313
X	17297883	X_17297883_SNP [dm3] X_17403850_SNP [dm6]	T	A	3.162e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	15051967	2L_15051967_SNP [dm3] 2L_15051967_SNP [dm6]	G	A	3.163e^-4	1	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
2L	8044786	2L_8044786_SNP [dm3] 2L_8044786_SNP [dm6]	G	T	3.165e^-4	1	SPLICE_SITE_REGION CG7466 INTRON CG7466
3L	7424729	3L_7424729_DEL [dm3] 3L_7431629_DEL [dm6]	TGTTCTG	T	3.208e^-4	1	INTRON CG42458
2L	18950964	2L_18950964_SNP [dm3] 2L_18950964_SNP [dm6]	G	A	3.213e^-4	1	UTR_3_PRIME CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6494055	2R_6494055_SNP [dm3] 2R_10606550_SNP [dm6]	C	T	3.214e^-4	1	INTRON psq
2R	15171997	2R_15171997_SNP [dm3] 2R_19284492_SNP [dm6]	T	G	3.216e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6209919	2L_6209919_SNP [dm3] 2L_6209919_SNP [dm6]	A	G	3.218e^-4	1	UTR_3_PRIME CG34380 DOWNSTREAM CG34380
3R	23506480	3R_23506480_SNP [dm3] 3R_27680758_SNP [dm6]	A	G	3.224e^-4	1	SYNONYMOUS_CODING Sce DOWNSTREAM CG12883	TF binding site mE1_TFBS_chinmo
2L	8465837	2L_8465837_SNP [dm3] 2L_8465837_SNP [dm6]	G	C	3.226e^-4	1	NON_SYNONYMOUS_CODING fu2 UPSTREAM d	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6547079	3L_6547079_SNP [dm3] 3L_6553979_SNP [dm6]	T	C	3.232e^-4	1	INTRON CG18769
3R	16745245	3R_16745245_SNP [dm3] 3R_20919523_SNP [dm6]	T	G	3.233e^-4	1	INTRON CG31191 & 1 other
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	3.233e^-4	1	INTRON shep
X	17298081	X_17298081_SNP [dm3] X_17404048_SNP [dm6]	G	A	3.234e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17424992	X_17424992_SNP [dm3] X_17530959_SNP [dm6]	T	A	3.237e^-4	1	INTRON CG43658
3R	14550822	3R_14550822_SNP [dm3] 3R_18725100_SNP [dm6]	C	T	3.238e^-4	1	DOWNSTREAM CG7714 INTRON Cha
2R	4658023	2R_4658023_SNP [dm3] 2R_8770518_SNP [dm6]	G	A	3.248e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12759302	3R_12759302_SNP [dm3] 3R_16933580_SNP [dm6]	A	G	3.250e^-4	1	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	2573523	2R_2573523_SNP [dm3] 2R_6686018_SNP [dm6]	A	G	3.257e^-4	1	INTRON CG9422 & 1 other
X	15862244	X_15862244_SNP [dm3] X_15968211_SNP [dm6]	A	T	3.258e^-4	1	INTRON mmd
2L	4511844	2L_4511844_SNP [dm3] 2L_4511844_SNP [dm6]	A	G	3.263e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17481838	3R_17481838_SNP [dm3] 3R_21656116_SNP [dm6]	G	T	3.269e^-4	1	INTRON E2f
3R	17481855	3R_17481855_SNP [dm3] 3R_21656133_SNP [dm6]	A	T	3.271e^-4	1	INTRON E2f
3R	17481875	3R_17481875_SNP [dm3] 3R_21656153_SNP [dm6]	A	C	3.271e^-4	1	INTRON E2f
2L	12100784	2L_12100784_INS [dm3] 2L_12100784_INS [dm6]	A	AT	3.283e^-4	1	UTR_3_PRIME Ced-12 & 1 other
3L	11328465	3L_11328465_SNP [dm3] 3L_11335365_SNP [dm6]	G	A	3.286e^-4	1	INTERGENIC
2R	14714501	2R_14714501_SNP [dm3] 2R_18826996_SNP [dm6]	T	C	3.290e^-4	1	INTRON CG15097
3L	15949434	3L_15949434_DEL [dm3] 3L_15956334_DEL [dm6]	GTATATTATTTATTA...	G	3.291e^-4	1	UTR_3_PRIME GXIVsPLA2 UPSTREAM elgi DOWNSTREAM GXIVsPLA2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	17071420	2R_17071420_SNP [dm3] 2R_21183915_SNP [dm6]	T	A	3.304e^-4	1	DOWNSTREAM tRNA:G3:57BCb INTRON tud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6387735	2R_6387735_SNP [dm3] 2R_10500230_SNP [dm6]	A	G	3.317e^-4	1	UTR_3_PRIME lola INTRON lola
X	4749118	X_4749118_SNP [dm3] X_4855085_SNP [dm6]	C	A	3.319e^-4	1	INTRON CG42594
3R	24488956	3R_24488956_SNP [dm3] 3R_28663234_SNP [dm6]	A	G	3.335e^-4	1	INTERGENIC
3L	17936863	3L_17936863_SNP [dm3] 3L_17943763_SNP [dm6]	T	C	3.348e^-4	1	INTRON CG43174
3L	9515824	3L_9515824_INS [dm3] 3L_9522724_INS [dm6]	C	CC	3.348e^-4	1	INTRON CG33700
X	4642461	X_4642461_SNP [dm3] X_4748428_SNP [dm6]	A	C	3.353e^-4	1	INTERGENIC
3L	4417456	3L_4417456_SNP [dm3] 3L_4417456_SNP [dm6]	G	C	3.354e^-4	1	INTRON DOR
X	3418523	X_3418523_SNP [dm3] X_3524490_SNP [dm6]	A	G	3.358e^-4	1	INTRON CG32791
3R	20268614	3R_20268614_SNP [dm3] 3R_24442892_SNP [dm6]	T	C	3.360e^-4	1	INTRON nAChRalpha1
X	17196148	X_17196148_SNP [dm3] X_17302115_SNP [dm6]	G	T	3.361e^-4	1	UPSTREAM CG5445 & 1 other INTRON CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14764494	3R_14764494_DEL [dm3] 3R_18938772_DEL [dm6]	AGA	A	3.367e^-4	1	INTRON CG42613
3L	15292976	3L_15292976_SNP [dm3] 3L_15299876_SNP [dm6]	A	C	3.375e^-4	1	SYNONYMOUS_CODING Best4
2R	15172086	2R_15172086_SNP [dm3] 2R_19284581_SNP [dm6]	G	A	3.377e^-4	1	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3L	10479652	3L_10479652_SNP [dm3] 3L_10486552_SNP [dm6]	C	T	3.382e^-4	1	INTRON A2bp1
2R	11768417	2R_11768417_SNP [dm3] 2R_15880912_SNP [dm6]	G	T	3.382e^-4	1	INTRON sli
3R	5306425	3R_5306425_SNP [dm3] 3R_9480703_SNP [dm6]	G	C	3.385e^-4	1	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11982058	2R_11982058_SNP [dm3] 2R_16094553_SNP [dm6]	T	A	3.393e^-4	1	INTRON Dg	TF binding site BDTNP1_TFBS_twi
3L	11527244	3L_11527244_SNP [dm3] 3L_11534144_SNP [dm6]	T	A	3.406e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7122776	2L_7122776_SNP [dm3] 2L_7122776_SNP [dm6]	T	A	3.411e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl
2L	14960312	2L_14960312_SNP [dm3] 2L_14960312_SNP [dm6]	T	C	3.419e^-4	1	INTRON CG42313
X	13032490	X_13032490_SNP [dm3] X_13138457_SNP [dm6]	G	T	3.431e^-4	1	UPSTREAM CG32645 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14771392	3R_14771392_SNP [dm3] 3R_18945670_SNP [dm6]	T	A	3.435e^-4	1	INTRON CG42613
2R	18940696	2R_18940696_SNP [dm3] 2R_23053173_SNP [dm6]	A	T	3.438e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10504947	3R_10504947_INS [dm3] 3R_14679225_INS [dm6]	T	TTT	3.440e^-4	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	16409859	3R_16409859_SNP [dm3] 3R_20584137_SNP [dm6]	A	G	3.444e^-4	1	SYNONYMOUS_CODING CG16953	TF binding site mE1_TFBS_sens
X	5704092	X_5704092_SNP [dm3] X_5810059_SNP [dm6]	C	T	3.450e^-4	1	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
3R	9340468	3R_9340468_SNP [dm3] 3R_13514746_SNP [dm6]	A	G	3.456e^-4	1	INTERGENIC
2L	12818112	2L_12818112_SNP [dm3] 2L_12818112_SNP [dm6]	A	G	3.461e^-4	1	UTR_3_PRIME kek1
3L	4417458	3L_4417458_SNP [dm3] 3L_4417458_SNP [dm6]	T	G	3.464e^-4	1	INTRON DOR
3R	5434412	3R_5434412_SNP [dm3] 3R_9608690_SNP [dm6]	G	T	3.465e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	10110089	2R_10110089_SNP [dm3] 2R_14222584_SNP [dm6]	C	T	3.465e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15265497	X_15265497_SNP [dm3] X_15371464_SNP [dm6]	C	T	3.475e^-4	1	INTRON acj6
3R	2738771	3R_2738771_SNP [dm3] 3R_6913049_SNP [dm6]	A	G	3.487e^-4	1	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12762111	3R_12762111_SNP [dm3] 3R_16936389_SNP [dm6]	C	T	3.488e^-4	1	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17298042	X_17298042_SNP [dm3] X_17404009_SNP [dm6]	T	A	3.490e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	3.499e^-4	1	INTRON sr
3R	16864518	3R_16864518_SNP [dm3] 3R_21038796_SNP [dm6]	C	T	3.501e^-4	1	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	14943320	2L_14943320_SNP [dm3] 2L_14943320_SNP [dm6]	G	T	3.502e^-4	1	INTRON CG42313
3L	16950089	3L_16950089_SNP [dm3] 3L_16956989_SNP [dm6]	T	C	3.518e^-4	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2R	4549032	2R_4549032_SNP [dm3] 2R_8661527_SNP [dm6]	A	C	3.522e^-4	1	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11946356	2L_11946356_SNP [dm3] 2L_11946356_SNP [dm6]	A	G	3.524e^-4	1	SYNONYMOUS_CODING Cry
2L	22912460	2L_22912460_SNP [dm3] 2L_23019728_SNP [dm6]	T	A	3.527e^-4	1	INTRON Cht3
X	16274856	X_16274856_SNP [dm3] X_16380823_SNP [dm6]	C	G	3.535e^-4	1	INTRON Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17297877	X_17297877_SNP [dm3] X_17403844_SNP [dm6]	C	T	3.544e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	12155853	X_12155853_SNP [dm3] X_12261820_SNP [dm6]	T	A	3.568e^-4	1	INTRON Ten-a
3R	16793149	3R_16793149_SNP [dm3] 3R_20967427_SNP [dm6]	A	C	3.569e^-4	1	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4600409	3L_4600409_SNP [dm3] 3L_4600409_SNP [dm6]	C	A	3.575e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18064690	3R_18064690_SNP [dm3] 3R_22238968_SNP [dm6]	C	A	3.581e^-4	1	INTRON SKIP
2R	10072409	2R_10072409_SNP [dm3] 2R_14184904_SNP [dm6]	T	C	3.583e^-4	1	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5423515	3R_5423515_SNP [dm3] 3R_9597793_SNP [dm6]	T	G	3.588e^-4	1	INTRON CG8312
2R	6307360	2R_6307360_SNP [dm3] 2R_10419855_SNP [dm6]	C	A	3.592e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14367088	2R_14367088_SNP [dm3] 2R_18479583_SNP [dm6]	A	T	3.594e^-4	1	INTRON CG30116
2R	10337952	2R_10337952_SNP [dm3] 2R_14450447_SNP [dm6]	G	A	3.604e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	4030101	3L_4030101_SNP [dm3] 3L_4030101_SNP [dm6]	C	A	3.606e^-4	1	UPSTREAM Gr64c INTRON Gr64b & 1 other
2R	15171652	2R_15171652_SNP [dm3] 2R_19284147_SNP [dm6]	G	A	3.614e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
X	17298043	X_17298043_SNP [dm3] X_17404010_SNP [dm6]	A	T	3.627e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	12873727	X_12873727_SNP [dm3] X_12979694_SNP [dm6]	A	T	3.635e^-4	1	INTERGENIC
3R	10504939	3R_10504939_SNP [dm3] 3R_14679217_SNP [dm6]	G	C	3.635e^-4	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3L	4600404	3L_4600404_SNP [dm3] 3L_4600404_SNP [dm6]	A	C	3.637e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15441037	3L_15441037_SNP [dm3] 3L_15447937_SNP [dm6]	T	A	3.644e^-4	1	INTERGENIC
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	3.646e^-4	1	INTERGENIC
3R	10131606	3R_10131606_SNP [dm3] 3R_14305884_SNP [dm6]	A	C	3.652e^-4	1	NON_SYNONYMOUS_CODING su_Hw_
2R	20117746	2R_20117746_SNP [dm3] 2R_24230223_SNP [dm6]	T	C	3.659e^-4	1	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5826670	3L_5826670_INS [dm3] 3L_5833570_INS [dm6]	G	GTAATAAAATATTATTG...	3.665e^-4	1	INTRON vn	TF binding site mE1_TFBS_HSA
3R	23879427	3R_23879427_SNP [dm3] 3R_28053705_SNP [dm6]	T	G	3.681e^-4	1	INTRON CG34362
2L	14886374	2L_14886374_SNP [dm3] 2L_14886374_SNP [dm6]	A	G	3.686e^-4	1	DOWNSTREAM CR45302 INTERGENIC
X	15265492	X_15265492_SNP [dm3] X_15371459_SNP [dm6]	C	T	3.688e^-4	1	INTRON acj6
3R	17213783	3R_17213783_SNP [dm3] 3R_21388061_SNP [dm6]	G	A	3.694e^-4	1	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9536659	3L_9536659_SNP [dm3] 3L_9543559_SNP [dm6]	G	A	3.727e^-4	1	SYNONYMOUS_CODING Ir67a
3R	5427235	3R_5427235_DEL [dm3] 3R_9601513_DEL [dm6]	GCTAACTAACATTTTTCCTA...	G	3.728e^-4	1	INTRON CG8312
2L	7461609	2L_7461609_SNP [dm3] 2L_7461609_SNP [dm6]	C	T	3.736e^-4	1	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18011271	2R_18011271_SNP [dm3] 2R_22123766_SNP [dm6]	A	T	3.736e^-4	1	SYNONYMOUS_CODING mei-S332 DOWNSTREAM GM130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7437420	2R_7437420_DEL [dm3] 2R_11549915_DEL [dm6]	CTTTT	C	3.736e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	9713033	2R_9713033_SNP [dm3] 2R_13825528_SNP [dm6]	G	A	3.741e^-4	1	UTR_3_PRIME CG13339 UPSTREAM fl_2_d & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14657309	3L_14657309_SNP [dm3] 3L_14664209_SNP [dm6]	C	G	3.752e^-4	1	INTRON dlp
2R	10532611	2R_10532611_SNP [dm3] 2R_14645106_SNP [dm6]	C	A	3.762e^-4	1	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16543927	2L_16543927_DEL [dm3] 2L_16543927_DEL [dm6]	TCAAGTTATT	T	3.769e^-4	1	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	14428269	X_14428269_SNP [dm3] X_14534236_SNP [dm6]	A	C	3.776e^-4	1	INTERGENIC
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	3.784e^-4	1	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
X	17297872	X_17297872_SNP [dm3] X_17403839_SNP [dm6]	G	A	3.788e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	12969633	X_12969633_SNP [dm3] X_13075600_SNP [dm6]	C	T	3.790e^-4	1	SYNONYMOUS_CODING rad
2R	11774552	2R_11774552_SNP [dm3] 2R_15887047_SNP [dm6]	C	T	3.799e^-4	1	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	18940704	2R_18940704_DEL [dm3] 2R_23053181_DEL [dm6]	AT	A	3.805e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6756773	2L_6756773_SNP [dm3] 2L_6756773_SNP [dm6]	G	T	3.806e^-4	1	DOWNSTREAM CG11221 INTERGENIC
3R	12761943	3R_12761943_SNP [dm3] 3R_16936221_SNP [dm6]	A	T	3.809e^-4	1	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20298016	2R_20298016_SNP [dm3] 2R_24410493_SNP [dm6]	T	A	3.810e^-4	1	START_GAINED SerT UTR_5_PRIME SerT
3L	4600405	3L_4600405_SNP [dm3] 3L_4600405_SNP [dm6]	A	C	3.814e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14342150	3R_14342150_SNP [dm3] 3R_18516428_SNP [dm6]	T	A	3.820e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	11018892	3L_11018892_SNP [dm3] 3L_11025792_SNP [dm6]	A	C	3.825e^-4	1	DOWNSTREAM Fad2 INTRON CG32079	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2403272	3L_2403272_SNP [dm3] 3L_2403272_SNP [dm6]	T	C	3.829e^-4	1	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15084499	2R_15084499_SNP [dm3] 2R_19196994_SNP [dm6]	C	T	3.834e^-4	1	INTRON hppy
2R	11671586	2R_11671586_SNP [dm3] 2R_15784081_SNP [dm6]	T	A	3.841e^-4	1	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6037088	2R_6037088_SNP [dm3] 2R_10149583_SNP [dm6]	A	T	3.858e^-4	1	INTRON KCNQ
2R	15171693	2R_15171693_SNP [dm3] 2R_19284188_SNP [dm6]	T	G	3.860e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
X	3200517	X_3200517_SNP [dm3] X_3306484_SNP [dm6]	G	C	3.866e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2R	18014324	2R_18014324_SNP [dm3] 2R_22126819_SNP [dm6]	T	C	3.866e^-4	1	NON_SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	1321485	2R_1321485_SNP [dm3] 2R_5433980_SNP [dm6]	T	G	3.873e^-4	1	INTRON laccase2
2R	11003003	2R_11003003_SNP [dm3] 2R_15115498_SNP [dm6]	A	T	3.879e^-4	1	UTR_5_PRIME chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7790433	2R_7790433_SNP [dm3] 2R_11902928_SNP [dm6]	A	G	3.880e^-4	1	INTRON MCPH1
3R	23856598	3R_23856598_SNP [dm3] 3R_28030876_SNP [dm6]	G	T	3.886e^-4	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10337941	2R_10337941_SNP [dm3] 2R_14450436_SNP [dm6]	G	C	3.895e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	5427931	3R_5427931_SNP [dm3] 3R_9602209_SNP [dm6]	C	T	3.899e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_twi
X	3379767	X_3379767_SNP [dm3] X_3485734_SNP [dm6]	T	C	3.902e^-4	1	START_GAINED CG10803 UTR_5_PRIME CG10803 UPSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	5810960	3L_5810960_SNP [dm3] 3L_5817860_SNP [dm6]	A	C	3.912e^-4	1	INTRON vn
2L	14721724	2L_14721724_SNP [dm3] 2L_14721724_SNP [dm6]	A	T	3.924e^-4	1	INTERGENIC
3R	19303967	3R_19303967_SNP [dm3] 3R_23478245_SNP [dm6]	A	T	3.936e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	3.937e^-4	1	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3L	8232350	3L_8232350_SNP [dm3] 3L_8239250_SNP [dm6]	C	G	3.938e^-4	1	SYNONYMOUS_CODING CG7213 INTRON Dscam4
2L	14690155	2L_14690155_DEL [dm3] 2L_14690155_DEL [dm6]	AA	A	3.941e^-4	1	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	4417449	3L_4417449_SNP [dm3] 3L_4417449_SNP [dm6]	A	T	3.944e^-4	1	INTRON DOR
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	3.948e^-4	1	INTERGENIC
3L	19986064	3L_19986064_SNP [dm3] 3L_19992964_SNP [dm6]	G	T	3.957e^-4	1	INTRON CG7646 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4600408	3L_4600408_SNP [dm3] 3L_4600408_SNP [dm6]	C	A	3.986e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11180068	3L_11180068_SNP [dm3] 3L_11186968_SNP [dm6]	A	G	3.995e^-4	1	INTRON GlcAT-P
3L	18226317	3L_18226317_SNP [dm3] 3L_18233217_SNP [dm6]	T	G	4.001e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7812923	X_7812923_SNP [dm3] X_7918890_SNP [dm6]	T	C	4.008e^-4	1	NON_SYNONYMOUS_CODING hdm DOWNSTREAM snz	TF binding site mE1_TFBS_chinmo
3L	14679862	3L_14679862_SNP [dm3] 3L_14686762_SNP [dm6]	T	C	4.023e^-4	1	DOWNSTREAM CG5048 INTRON ome
2R	10109017	2R_10109017_SNP [dm3] 2R_14221512_SNP [dm6]	C	T	4.029e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	19797535	2R_19797535_SNP [dm3] 2R_23910012_SNP [dm6]	C	T	4.030e^-4	1	UPSTREAM kcc INTRON kcc
2R	6308266	2R_6308266_SNP [dm3] 2R_10420761_SNP [dm6]	G	T	4.032e^-4	1	SYNONYMOUS_CODING CG11825 UPSTREAM CG33474 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10244844	3R_10244844_SNP [dm3] 3R_14419122_SNP [dm6]	T	G	4.040e^-4	1	NON_SYNONYMOUS_CODING natalisin INTRON cv-c	TF binding site mE1_TFBS_chinmo
2R	15171790	2R_15171790_SNP [dm3] 2R_19284285_SNP [dm6]	G	A	4.041e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	4.071e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21501348	X_21501348_SNP [dm3] X_21630321_SNP [dm6]	G	A	4.076e^-4	1	UPSTREAM CR44712 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	5634654	3R_5634654_SNP [dm3] 3R_9808932_SNP [dm6]	C	T	4.083e^-4	1	UTR_5_PRIME FBX011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12254006	2L_12254006_SNP [dm3] 2L_12254006_SNP [dm6]	C	T	4.084e^-4	1	INTRON aret
3L	9547167	3L_9547167_SNP [dm3] 3L_9554067_SNP [dm6]	G	A	4.100e^-4	1	INTRON CG42673
2L	14732571	2L_14732571_SNP [dm3] 2L_14732571_SNP [dm6]	C	T	4.122e^-4	1	EXON CR44857
X	9938934	X_9938934_SNP [dm3] X_10044901_SNP [dm6]	A	T	4.124e^-4	1	UTR_3_PRIME Cht6 DOWNSTREAM CR45185 & 1 other INTRON Cht6
X	14321423	X_14321423_SNP [dm3] X_14427390_SNP [dm6]	C	A	4.126e^-4	1	INTRON dpr8
3L	15274926	3L_15274926_SNP [dm3] 3L_15281826_SNP [dm6]	A	C	4.128e^-4	1	INTERGENIC
2R	6727605	2R_6727605_SNP [dm3] 2R_10840100_SNP [dm6]	C	T	4.131e^-4	1	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
2L	1978366	2L_1978366_SNP [dm3] 2L_1978366_SNP [dm6]	A	G	4.139e^-4	1	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17298663	X_17298663_SNP [dm3] X_17404630_SNP [dm6]	C	T	4.149e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	4.150e^-4	1	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	25078600	3R_25078600_SNP [dm3] 3R_29252878_SNP [dm6]	T	C	4.151e^-4	1	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10389385	2R_10389385_INS [dm3] 2R_14501880_INS [dm6]	A	AAACTA	4.153e^-4	1	INTRON Cpsf160
3L	15450977	3L_15450977_SNP [dm3] 3L_15457877_SNP [dm6]	T	A	4.153e^-4	1	UPSTREAM CR45394 EXON CR45395
2R	11455581	2R_11455581_SNP [dm3] 2R_15568076_SNP [dm6]	C	T	4.158e^-4	1	UPSTREAM CG30466 INTRON Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8232371	3L_8232371_SNP [dm3] 3L_8239271_SNP [dm6]	C	T	4.191e^-4	1	SYNONYMOUS_CODING CG7213 INTRON Dscam4
2L	20034659	2L_20034659_SNP [dm3] 2L_20034659_SNP [dm6]	G	T	4.192e^-4	1	INTRON sNPF
2L	12125815	2L_12125815_DEL [dm3] 2L_12125815_DEL [dm6]	TGTAT	T	4.196e^-4	1	SPLICE_SITE_REGION CG17211 INTRON CG17211
3R	2267129	3R_2267129_SNP [dm3] 3R_6441407_SNP [dm6]	G	T	4.197e^-4	1	NON_SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16426808	2R_16426808_SNP [dm3] 2R_20539303_SNP [dm6]	C	G	4.200e^-4	1	UTR_5_PRIME CG13427 DOWNSTREAM CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2823404	2L_2823404_DEL [dm3] 2L_2823404_DEL [dm6]	TGCTT	T	4.203e^-4	1	DOWNSTREAM CG3123 INTRON Duox
3R	23858708	3R_23858708_SNP [dm3] 3R_28032986_SNP [dm6]	C	A	4.224e^-4	1	INTRON CG34362
2R	10003023	2R_10003023_SNP [dm3] 2R_14115518_SNP [dm6]	G	A	4.234e^-4	1	INTRON Prosap
X	17007544	X_17007544_INS [dm3] X_17113511_INS [dm6]	T	TT	4.234e^-4	1	INTRON CG5004
2R	16803745	2R_16803745_SNP [dm3] 2R_20916240_SNP [dm6]	C	T	4.234e^-4	1	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12814967	3L_12814967_SNP [dm3] 3L_12821867_SNP [dm6]	T	C	4.234e^-4	1	SPLICE_SITE_REGION CG42588 SYNONYMOUS_CODING CG42588
3L	11670641	3L_11670641_SNP [dm3] 3L_11677541_SNP [dm6]	G	T	4.244e^-4	1	INTRON CG32085
3R	15152181	3R_15152181_SNP [dm3] 3R_19326459_SNP [dm6]	T	C	4.253e^-4	1	UPSTREAM Dl DOWNSTREAM CR44175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	12291041	3L_12291041_SNP [dm3] 3L_12297941_SNP [dm6]	T	C	4.259e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	4.263e^-4	1	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2L	3840508	2L_3840508_SNP [dm3] 2L_3840508_SNP [dm6]	T	C	4.264e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	23882683	3R_23882683_SNP [dm3] 3R_28056961_SNP [dm6]	A	G	4.276e^-4	1	INTRON CG34362
2L	15898592	2L_15898592_SNP [dm3] 2L_15898592_SNP [dm6]	A	G	4.279e^-4	1	DOWNSTREAM CG31823 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	4.284e^-4	1	INTRON salm
2R	18567413	2R_18567413_SNP [dm3] 2R_22679908_SNP [dm6]	A	T	4.285e^-4	1	INTERGENIC
2L	7382894	2L_7382894_SNP [dm3] 2L_7382894_SNP [dm6]	C	G	4.289e^-4	1	SYNONYMOUS_CODING ninaC UTR_3_PRIME ninaC DOWNSTREAM ninaC
2R	7147657	2R_7147657_SNP [dm3] 2R_11260152_SNP [dm6]	A	G	4.297e^-4	1	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2L	10315970	2L_10315970_SNP [dm3] 2L_10315970_SNP [dm6]	G	C	4.308e^-4	1	INTRON CG4972	TF binding site mE1_TFBS_sens
3L	11011624	3L_11011624_SNP [dm3] 3L_11018524_SNP [dm6]	G	C	4.315e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15152285	3R_15152285_SNP [dm3] 3R_19326563_SNP [dm6]	C	T	4.315e^-4	1	UPSTREAM Dl DOWNSTREAM CR44175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	14702106	2L_14702106_INS [dm3] 2L_14702106_INS [dm6]	T	CAAGAGATTGGTA...	4.324e^-4	1	INTERGENIC
2R	10532680	2R_10532680_SNP [dm3] 2R_14645175_SNP [dm6]	T	C	4.339e^-4	1	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2015382	2L_2015382_SNP [dm3] 2L_2015382_SNP [dm6]	A	T	4.348e^-4	1	INTRON CG4238	TF binding site BDTNP1_TFBS_dl
X	6826742	X_6826742_SNP [dm3] X_6932709_SNP [dm6]	G	T	4.352e^-4	1	INTRON CG14431
2R	6307356	2R_6307356_SNP [dm3] 2R_10419851_SNP [dm6]	T	G	4.353e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12291040	3L_12291040_SNP [dm3] 3L_12297940_SNP [dm6]	C	T	4.356e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12070219	3L_12070219_SNP [dm3] 3L_12077119_SNP [dm6]	G	T	4.357e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
3R	8083129	3R_8083129_SNP [dm3] 3R_12257407_SNP [dm6]	G	T	4.367e^-4	1	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	15265495	X_15265495_SNP [dm3] X_15371462_SNP [dm6]	A	G	4.370e^-4	1	INTRON acj6
3L	15513461	3L_15513461_SNP [dm3] 3L_15520361_SNP [dm6]	A	G	4.376e^-4	1	UPSTREAM mex1 & 1 other EXON CR43159
3R	20921511	3R_20921511_SNP [dm3] 3R_25095789_SNP [dm6]	T	C	4.377e^-4	1	SYNONYMOUS_CODING fd96Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13974061	2R_13974061_SNP [dm3] 2R_18086556_SNP [dm6]	G	A	4.379e^-4	1	INTRON CG34386
2R	6307681	2R_6307681_SNP [dm3] 2R_10420176_SNP [dm6]	T	A	4.385e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6307710	2R_6307710_SNP [dm3] 2R_10420205_SNP [dm6]	G	A	4.385e^-4	1	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20037217	2L_20037217_SNP [dm3] 2L_20037217_SNP [dm6]	C	T	4.392e^-4	1	INTRON sNPF
2R	10172748	2R_10172748_SNP [dm3] 2R_14285243_SNP [dm6]	A	G	4.392e^-4	1	INTRON Ih
3R	10653148	3R_10653148_SNP [dm3] 3R_14827426_SNP [dm6]	G	T	4.394e^-4	1	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	11484404	2L_11484404_SNP [dm3] 2L_11484404_SNP [dm6]	G	C	4.397e^-4	1	UPSTREAM CG43355 & 1 other INTERGENIC
3L	11018113	3L_11018113_SNP [dm3] 3L_11025013_SNP [dm6]	G	C	4.410e^-4	1	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16395644	2R_16395644_SNP [dm3] 2R_20508139_SNP [dm6]	C	G	4.414e^-4	1	UPSTREAM CR44646 INTERGENIC
2L	13730751	2L_13730751_INS [dm3] 2L_13730751_INS [dm6]	T	TATCCCACTCAAACTCAAGA...	4.419e^-4	1	INTERGENIC
2L	18395268	2L_18395268_SNP [dm3] 2L_18395268_SNP [dm6]	A	C	4.420e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	15853419	3L_15853419_SNP [dm3] 3L_15860319_SNP [dm6]	T	C	4.427e^-4	1	INTRON pHCl
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	4.448e^-4	1	INTRON CG42260
X	21498855	X_21498855_SNP [dm3] X_21627828_SNP [dm6]	G	T	4.450e^-4	1	INTRON DIP1	transposable element FlyBase
X	19341618	X_19341618_INS [dm3] X_19447585_INS [dm6]	T	TA	4.451e^-4	1	INTRON kek5
X	8201498	X_8201498_SNP [dm3] X_8307465_SNP [dm6]	A	T	4.454e^-4	1	INTRON nAChRalpha3
2R	15172026	2R_15172026_SNP [dm3] 2R_19284521_SNP [dm6]	T	A	4.454e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14386756	2R_14386756_SNP [dm3] 2R_18499251_SNP [dm6]	G	A	4.456e^-4	1	INTERGENIC
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	4.457e^-4	1	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12325242	3R_12325242_SNP [dm3] 3R_16499520_SNP [dm6]	G	A	4.458e^-4	1	UPSTREAM Gr89a INTRON decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16359759	2L_16359759_SNP [dm3] 2L_16359759_SNP [dm6]	A	G	4.459e^-4	1	INTERGENIC
2R	17065643	2R_17065643_SNP [dm3] 2R_21178138_SNP [dm6]	T	G	4.474e^-4	1	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad
2L	6835615	2L_6835615_SNP [dm3] 2L_6835615_SNP [dm6]	A	C	4.485e^-4	1	INTRON sens-2	TF binding site mE1_TFBS_sens
2L	10315969	2L_10315969_SNP [dm3] 2L_10315969_SNP [dm6]	G	T	4.505e^-4	1	INTRON CG4972	TF binding site mE1_TFBS_sens
3R	2811326	3R_2811326_SNP [dm3] 3R_6985604_SNP [dm6]	T	A	4.513e^-4	1	INTRON Antp
2L	7462424	2L_7462424_SNP [dm3] 2L_7462424_SNP [dm6]	A	G	4.540e^-4	1	UPSTREAM Gr28b INTERGENIC
3R	14326577	3R_14326577_SNP [dm3] 3R_18500855_SNP [dm6]	G	T	4.545e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5628413	2L_5628413_SNP [dm3] 2L_5628413_SNP [dm6]	T	A	4.549e^-4	1	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
X	12175724	X_12175724_SNP [dm3] X_12281691_SNP [dm6]	C	T	4.551e^-4	1	INTRON Ten-a
3L	1665376	3L_1665376_SNP [dm3] 3L_1665376_SNP [dm6]	C	G	4.552e^-4	1	UPSTREAM CG7971 DOWNSTREAM Uhg7 INTRON CG7974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	18445868	3L_18445868_SNP [dm3] 3L_18452768_SNP [dm6]	C	T	4.554e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1570877	X_1570877_SNP [dm3] X_1676844_SNP [dm6]	T	C	4.568e^-4	1	SYNONYMOUS_CODING CG32809 UTR_3_PRIME CG32809	TF binding site mE1_TFBS_chinmo
2L	10464190	2L_10464190_SNP [dm3] 2L_10464190_SNP [dm6]	C	T	4.570e^-4	1	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2R	15583296	2R_15583296_SNP [dm3] 2R_19695791_SNP [dm6]	G	T	4.571e^-4	1	EXON CR44506	regulatory region REDfly_CRMs
3R	12760952	3R_12760952_DEL [dm3] 3R_16935230_DEL [dm6]	GA	G	4.584e^-4	1	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18015004	2R_18015004_SNP [dm3] 2R_22127499_SNP [dm6]	A	G	4.594e^-4	1	UTR_5_PRIME GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	4.603e^-4	1	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13732111	2L_13732111_SNP [dm3] 2L_13732111_SNP [dm6]	T	A	4.620e^-4	1	INTERGENIC
2R	14716243	2R_14716243_SNP [dm3] 2R_18828738_SNP [dm6]	C	T	4.624e^-4	1	INTRON CG15097
2R	13820155	2R_13820155_SNP [dm3] 2R_17932650_SNP [dm6]	A	T	4.625e^-4	1	INTERGENIC
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	4.627e^-4	1	INTERGENIC
3L	20785927	3L_20785927_SNP [dm3] 3L_20792827_SNP [dm6]	C	T	4.630e^-4	1	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5427925	3R_5427925_SNP [dm3] 3R_9602203_SNP [dm6]	T	C	4.641e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_twi
3L	11328480	3L_11328480_SNP [dm3] 3L_11335380_SNP [dm6]	C	A	4.655e^-4	1	INTERGENIC
3L	18155892	3L_18155892_SNP [dm3] 3L_18162792_SNP [dm6]	A	C	4.657e^-4	1	UPSTREAM CG13699 INTERGENIC
2L	20074668	2L_20074668_SNP [dm3] 2L_20074668_SNP [dm6]	T	C	4.662e^-4	1	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14597034	3L_14597034_SNP [dm3] 3L_14603934_SNP [dm6]	T	G	4.666e^-4	1	INTERGENIC
3R	17565689	3R_17565689_SNP [dm3] 3R_21739967_SNP [dm6]	A	T	4.669e^-4	1	UPSTREAM CG5849 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18940698	2R_18940698_SNP [dm3] 2R_23053175_SNP [dm6]	T	A	4.677e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11026412	3L_11026412_SNP [dm3] 3L_11033312_SNP [dm6]	A	G	4.678e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10659191	3R_10659191_SNP [dm3] 3R_14833469_SNP [dm6]	G	C	4.678e^-4	1	INTRON btsz
3R	5432897	3R_5432897_SNP [dm3] 3R_9607175_SNP [dm6]	A	T	4.684e^-4	1	INTRON CG8312
2R	16802022	2R_16802022_SNP [dm3] 2R_20914517_SNP [dm6]	G	T	4.697e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	17065650	2R_17065650_SNP [dm3] 2R_21178145_SNP [dm6]	G	T	4.698e^-4	1	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15081402	2L_15081402_SNP [dm3] 2L_15081402_SNP [dm6]	C	T	4.701e^-4	1	INTRON CG15270
3L	1409574	3L_1409574_SNP [dm3] 3L_1409574_SNP [dm6]	T	A	4.722e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10792177	2R_10792177_SNP [dm3] 2R_14904672_SNP [dm6]	A	G	4.722e^-4	1	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9322965	2R_9322965_SNP [dm3] 2R_13435460_SNP [dm6]	G	A	4.722e^-4	1	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
2L	15002638	2L_15002638_SNP [dm3] 2L_15002638_SNP [dm6]	A	T	4.725e^-4	1	INTERGENIC
2L	15002639	2L_15002639_SNP [dm3] 2L_15002639_SNP [dm6]	T	A	4.725e^-4	1	INTERGENIC
3L	4353690	3L_4353690_SNP [dm3] 3L_4353690_SNP [dm6]	C	T	4.728e^-4	1	INTRON Cip4
2L	10480226	2L_10480226_SNP [dm3] 2L_10480226_SNP [dm6]	G	C	4.732e^-4	1	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10480234	2L_10480234_SNP [dm3] 2L_10480234_SNP [dm6]	A	G	4.732e^-4	1	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13084176	2R_13084176_SNP [dm3] 2R_17196671_SNP [dm6]	T	C	4.735e^-4	1	SYNONYMOUS_CODING CG10950
2L	8935474	2L_8935474_SNP [dm3] 2L_8935474_SNP [dm6]	A	C	4.746e^-4	1	NON_SYNONYMOUS_CODING Tsp29Fa
2L	16392909	2L_16392909_SNP [dm3] 2L_16392909_SNP [dm6]	A	T	4.770e^-4	1	INTERGENIC
2R	12834615	2R_12834615_SNP [dm3] 2R_16947110_SNP [dm6]	C	A	4.782e^-4	1	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
2R	6326737	2R_6326737_SNP [dm3] 2R_10439232_SNP [dm6]	A	T	4.794e^-4	1	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl
2L	2823385	2L_2823385_SNP [dm3] 2L_2823385_SNP [dm6]	T	C	4.810e^-4	1	DOWNSTREAM CG3123 INTRON Duox
3R	14081401	3R_14081401_SNP [dm3] 3R_18255679_SNP [dm6]	C	T	4.823e^-4	1	SYNONYMOUS_CODING moi START_GAINED Tgs1 UTR_5_PRIME Tgs1 UPSTREAM Rpb4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	14744457	2L_14744457_SNP [dm3] 2L_14744457_SNP [dm6]	T	C	4.829e^-4	1	DOWNSTREAM CG34166 & 2 others INTRON CG42681
3R	13253822	3R_13253822_SNP [dm3] 3R_17428100_SNP [dm6]	G	A	4.834e^-4	1	INTRON CG5873	TF binding site BDTNP1_TFBS_twi
2L	586009	2L_586009_SNP [dm3] 2L_586009_SNP [dm6]	A	T	4.836e^-4	1	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14807145	X_14807145_SNP [dm3] X_14913112_SNP [dm6]	T	C	4.844e^-4	1	SYNONYMOUS_CODING CG12398 INTRON Flo2	TF binding site mE1_TFBS_sens
2L	1079090	2L_1079090_SNP [dm3] 2L_1079090_SNP [dm6]	C	G	4.845e^-4	1	INTRON ast	TF binding site mE1_TFBS_sens
2R	19826800	2R_19826800_SNP [dm3] 2R_23939277_SNP [dm6]	A	G	4.851e^-4	1	NON_SYNONYMOUS_CODING CG3735	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	18398502	2L_18398502_SNP [dm3] 2L_18398502_SNP [dm6]	A	T	4.864e^-4	1	INTERGENIC
3L	15518229	3L_15518229_SNP [dm3] 3L_15525129_SNP [dm6]	A	T	4.865e^-4	1	NON_SYNONYMOUS_CODING CG33986 UPSTREAM CG7945 DOWNSTREAM CG33985	TF binding site mE1_TFBS_sens
2R	2953036	2R_2953036_SNP [dm3] 2R_7065531_SNP [dm6]	T	A	4.870e^-4	1	INTRON Tsp42Er
2R	6746285	2R_6746285_SNP [dm3] 2R_10858780_SNP [dm6]	A	T	4.882e^-4	1	UPSTREAM CR44302 INTRON CG30015
2R	15172028	2R_15172028_SNP [dm3] 2R_19284523_SNP [dm6]	C	A	4.887e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15172029	2R_15172029_SNP [dm3] 2R_19284524_SNP [dm6]	T	A	4.887e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15148650	2L_15148650_SNP [dm3] 2L_15148650_SNP [dm6]	G	C	4.887e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18843035	2R_18843035_SNP [dm3] 2R_22955512_SNP [dm6]	C	G	4.893e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5427933	3R_5427933_SNP [dm3] 3R_9602211_SNP [dm6]	G	C	4.898e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_twi
3R	7918169	3R_7918169_SNP [dm3] 3R_12092447_SNP [dm6]	C	A	4.901e^-4	1	INTERGENIC
X	3339621	X_3339621_INS [dm3] X_3445588_INS [dm6]	C	CCATTGGGC	4.901e^-4	1	UPSTREAM CG12535 INTRON CR44999 & 1 other
3R	14342272	3R_14342272_SNP [dm3] 3R_18516550_SNP [dm6]	A	T	4.903e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	24481762	3R_24481762_DEL [dm3] 3R_28656040_DEL [dm6]	CC	C	4.906e^-4	1	INTERGENIC
3R	25099051	3R_25099051_SNP [dm3] 3R_29273329_SNP [dm6]	G	A	4.915e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	11200176	3L_11200176_SNP [dm3] 3L_11207076_SNP [dm6]	C	T	4.916e^-4	1	SYNONYMOUS_CODING Ube3a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	4.926e^-4	1	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
2R	15171647	2R_15171647_SNP [dm3] 2R_19284142_SNP [dm6]	T	A	4.929e^-4	1	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18940712	2R_18940712_SNP [dm3] 2R_23053189_SNP [dm6]	T	C	4.950e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4168404	3L_4168404_SNP [dm3] 3L_4168404_SNP [dm6]	C	A	4.951e^-4	1	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4168407	3L_4168407_SNP [dm3] 3L_4168407_SNP [dm6]	A	G	4.951e^-4	1	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14690200	2L_14690200_SNP [dm3] 2L_14690200_SNP [dm6]	T	C	4.960e^-4	1	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14690384	2L_14690384_SNP [dm3] 2L_14690384_SNP [dm6]	C	A	4.960e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2859594	3L_2859594_SNP [dm3] 3L_2859594_SNP [dm6]	G	T	4.963e^-4	1	INTRON CG43444
3L	17134679	3L_17134679_SNP [dm3] 3L_17141579_SNP [dm6]	C	A	4.969e^-4	1	INTRON Rbp6
3R	12531226	3R_12531226_SNP [dm3] 3R_16705504_SNP [dm6]	T	C	4.971e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13924945	3R_13924945_SNP [dm3] 3R_18099223_SNP [dm6]	C	T	4.977e^-4	1	INTRON sr
3L	4417483	3L_4417483_SNP [dm3] 3L_4417483_SNP [dm6]	G	C	4.983e^-4	1	INTRON DOR
X	17750444	X_17750444_SNP [dm3] X_17856411_SNP [dm6]	C	G	4.992e^-4	1	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14974035	3L_14974035_SNP [dm3] 3L_14980935_SNP [dm6]	A	C	4.996e^-4	1	NON_SYNONYMOUS_CODING CG3349
2L	8654603	2L_8654603_INS [dm3] 2L_8654603_INS [dm6]	C	TTGCGGTTAAGAA...	5.006e^-4	1	INTRON Sema-1a
3L	12290831	3L_12290831_SNP [dm3] 3L_12297731_SNP [dm6]	T	C	5.009e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5098162	3R_5098162_SNP [dm3] 3R_9272440_SNP [dm6]	T	G	5.013e^-4	1	INTERGENIC
3R	26084803	3R_26084803_SNP [dm3] 3R_30259081_SNP [dm6]	C	T	5.015e^-4	1	INTERGENIC
2L	14588685	2L_14588685_SNP [dm3] 2L_14588685_SNP [dm6]	A	T	5.016e^-4	1	UPSTREAM CG42680 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	16716390	3L_16716390_SNP [dm3] 3L_16723290_SNP [dm6]	A	G	5.023e^-4	1	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad
2L	1103147	2L_1103147_SNP [dm3] 2L_1103147_SNP [dm6]	C	A	5.026e^-4	1	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3L	16883382	3L_16883382_SNP [dm3] 3L_16890282_SNP [dm6]	T	C	5.027e^-4	1	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
3R	25700668	3R_25700668_SNP [dm3] 3R_29874946_SNP [dm6]	T	C	5.028e^-4	1	UTR_3_PRIME CG34133 DOWNSTREAM CG34133
2L	11472129	2L_11472129_SNP [dm3] 2L_11472129_SNP [dm6]	A	G	5.037e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23123123	3R_23123123_SNP [dm3] 3R_27297401_SNP [dm6]	T	C	5.039e^-4	1	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
3L	14644290	3L_14644290_SNP [dm3] 3L_14651190_SNP [dm6]	T	C	5.039e^-4	1	INTRON dlp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14668108	3L_14668108_SNP [dm3] 3L_14675008_SNP [dm6]	G	C	5.042e^-4	1	SYNONYMOUS_CODING CG4914 UPSTREAM tRNA:M3:70Fa DOWNSTREAM tRNA:M3:70Fb INTRON ome	TF binding site mE1_TFBS_sens
2R	13527193	2R_13527193_SNP [dm3] 2R_17639688_SNP [dm6]	T	C	5.044e^-4	1	UPSTREAM CG10936 INTERGENIC
2L	20037222	2L_20037222_INS [dm3] 2L_20037222_INS [dm6]	A	GCAAAGTACGGCTGCTGCGA...	5.045e^-4	1	INTRON sNPF
3R	15585221	3R_15585221_SNP [dm3] 3R_19759499_SNP [dm6]	A	G	5.048e^-4	1	INTRON GluClalpha
3L	15886518	3L_15886518_SNP [dm3] 3L_15893418_SNP [dm6]	A	C	5.054e^-4	1	INTRON pHCl
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	5.054e^-4	1	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	5.070e^-4	1	INTERGENIC
X	17298011	X_17298011_SNP [dm3] X_17403978_SNP [dm6]	C	A	5.080e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	13132027	X_13132027_SNP [dm3] X_13237994_SNP [dm6]	G	T	5.082e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9949145	2L_9949145_SNP [dm3] 2L_9949145_SNP [dm6]	G	A	5.087e^-4	1	INTERGENIC
3L	11018315	3L_11018315_SNP [dm3] 3L_11025215_SNP [dm6]	T	A	5.089e^-4	1	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
2R	14715772	2R_14715772_SNP [dm3] 2R_18828267_SNP [dm6]	G	A	5.089e^-4	1	INTRON CG15097
3R	5895504	3R_5895504_SNP [dm3] 3R_10069782_SNP [dm6]	T	A	5.090e^-4	1	INTERGENIC
2R	7004873	2R_7004873_SNP [dm3] 2R_11117368_SNP [dm6]	C	G	5.090e^-4	1	UTR_3_PRIME Cyp12d1-p UPSTREAM luna
3R	14770633	3R_14770633_SNP [dm3] 3R_18944911_SNP [dm6]	T	C	5.090e^-4	1	INTRON CG42613
3L	9549133	3L_9549133_SNP [dm3] 3L_9556033_SNP [dm6]	C	T	5.092e^-4	1	INTRON CG42673
2R	10561991	2R_10561991_SNP [dm3] 2R_14674486_SNP [dm6]	A	G	5.100e^-4	1	UTR_3_PRIME CG30479 DOWNSTREAM CG30480 & 1 other INTRON mspo
2R	20056507	2R_20056507_SNP [dm3] 2R_24168984_SNP [dm6]	A	G	5.103e^-4	1	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11932644	2R_11932644_SNP [dm3] 2R_16045139_SNP [dm6]	C	T	5.112e^-4	1	SYNONYMOUS_CODING SP2353
2L	746353	2L_746353_SNP [dm3] 2L_746353_SNP [dm6]	T	C	5.115e^-4	1	INTERGENIC
2R	6746272	2R_6746272_SNP [dm3] 2R_10858767_SNP [dm6]	T	C	5.115e^-4	1	UPSTREAM CR44302 INTRON CG30015
3L	4600413	3L_4600413_MNP [dm3] 3L_4600413_MNP [dm6]	TCA	ATC	5.122e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24818371	3R_24818371_SNP [dm3] 3R_28992649_SNP [dm6]	C	T	5.122e^-4	1	DOWNSTREAM wat INTERGENIC
3R	16705842	3R_16705842_SNP [dm3] 3R_20880120_SNP [dm6]	G	A	5.125e^-4	1	UPSTREAM CR44048 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	24602440	3R_24602440_SNP [dm3] 3R_28776718_SNP [dm6]	A	G	5.125e^-4	1	UPSTREAM CR44952 INTERGENIC
2L	13732136	2L_13732136_SNP [dm3] 2L_13732136_SNP [dm6]	C	G	5.128e^-4	1	INTERGENIC
2L	14690732	2L_14690732_SNP [dm3] 2L_14690732_SNP [dm6]	A	T	5.129e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9067818	2R_9067818_SNP [dm3] 2R_13180313_SNP [dm6]	G	T	5.131e^-4	1	INTRON CG17724 & 2 others
3L	2806330	3L_2806330_SNP [dm3] 3L_2806330_SNP [dm6]	C	A	5.132e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_inv
2R	15120351	2R_15120351_SNP [dm3] 2R_19232846_SNP [dm6]	A	G	5.138e^-4	1	INTRON cora	TF binding site mE1_TFBS_HSA
2L	2112073	2L_2112073_SNP [dm3] 2L_2112073_SNP [dm6]	T	G	5.140e^-4	1	INTERGENIC
2R	12374343	2R_12374343_SNP [dm3] 2R_16486838_SNP [dm6]	G	T	5.141e^-4	1	NON_SYNONYMOUS_CODING CG33458
2L	8654605	2L_8654605_SNP [dm3] 2L_8654605_SNP [dm6]	A	C	5.157e^-4	1	INTRON Sema-1a
2R	6460573	2R_6460573_SNP [dm3] 2R_10573068_SNP [dm6]	T	C	5.158e^-4	1	INTRON psq
2R	16638575	2R_16638575_SNP [dm3] 2R_20751070_SNP [dm6]	C	T	5.170e^-4	1	DOWNSTREAM dpr INTRON CG34201
3L	13980059	3L_13980059_SNP [dm3] 3L_13986959_SNP [dm6]	A	G	5.174e^-4	1	NON_SYNONYMOUS_CODING CG17362 UPSTREAM CG9040 INTRON CG17364
X	19160522	X_19160522_SNP [dm3] X_19266489_SNP [dm6]	T	C	5.177e^-4	1	DOWNSTREAM CG8010 INTRON Vav
3L	4172422	3L_4172422_SNP [dm3] 3L_4172422_SNP [dm6]	C	T	5.179e^-4	1	SYNONYMOUS_CODING Ero1L	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2879957	2L_2879957_SNP [dm3] 2L_2879957_SNP [dm6]	G	A	5.187e^-4	1	DOWNSTREAM CG31950 & 1 other INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	8563635	2L_8563635_SNP [dm3] 2L_8563635_SNP [dm6]	T	C	5.189e^-4	1	INTRON Sema-1a
3R	4107583	3R_4107583_SNP [dm3] 3R_8281861_SNP [dm6]	G	A	5.196e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	23886130	3R_23886130_SNP [dm3] 3R_28060408_SNP [dm6]	C	A	5.207e^-4	1	INTRON CG34362
3R	12759267	3R_12759267_SNP [dm3] 3R_16933545_SNP [dm6]	A	C	5.208e^-4	1	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	12873721	X_12873721_SNP [dm3] X_12979688_SNP [dm6]	C	A	5.215e^-4	1	INTERGENIC
2R	10390036	2R_10390036_SNP [dm3] 2R_14502531_SNP [dm6]	T	C	5.223e^-4	1	SPLICE_SITE_REGION Cpsf160 SYNONYMOUS_CODING Cpsf160 INTRON Cpsf160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	10986168	X_10986168_SNP [dm3] X_11092135_SNP [dm6]	T	A	5.226e^-4	1	UPSTREAM CG2061 DOWNSTREAM CG2076 EXON CR45604
X	9084516	X_9084516_SNP [dm3] X_9190483_SNP [dm6]	G	A	5.231e^-4	1	INTRON CG12115
3R	19715885	3R_19715885_SNP [dm3] 3R_23890163_SNP [dm6]	C	T	5.234e^-4	1	UPSTREAM Pli DOWNSTREAM TfIIA-S INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	17896199	2L_17896199_SNP [dm3] 2L_17896199_SNP [dm6]	G	T	5.240e^-4	1	INTERGENIC
2R	7790526	2R_7790526_SNP [dm3] 2R_11903021_SNP [dm6]	G	A	5.247e^-4	1	INTRON MCPH1
2R	7790557	2R_7790557_SNP [dm3] 2R_11903052_SNP [dm6]	T	G	5.247e^-4	1	INTRON MCPH1
3L	14605753	3L_14605753_SNP [dm3] 3L_14612653_SNP [dm6]	A	G	5.248e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9970706	2L_9970706_SNP [dm3] 2L_9970706_SNP [dm6]	C	A	5.260e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17939634	3L_17939634_SNP [dm3] 3L_17946534_SNP [dm6]	C	G	5.261e^-4	1	DOWNSTREAM CG43174 & 1 other INTERGENIC
3L	4479997	3L_4479997_SNP [dm3] 3L_4479997_SNP [dm6]	C	T	5.262e^-4	1	UPSTREAM CG7465 INTERGENIC
3L	2635888	3L_2635888_SNP [dm3] 3L_2635888_SNP [dm6]	A	G	5.269e^-4	1	UTR_5_PRIME MEP-1 UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8202112	2R_8202112_SNP [dm3] 2R_12314607_SNP [dm6]	T	G	5.274e^-4	1	DOWNSTREAM CG30203 INTRON CG30046
3R	2771431	3R_2771431_SNP [dm3] 3R_6945709_SNP [dm6]	T	A	5.286e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10337932	2R_10337932_SNP [dm3] 2R_14450427_SNP [dm6]	A	T	5.291e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	20313338	3R_20313338_SNP [dm3] 3R_24487616_SNP [dm6]	G	T	5.297e^-4	1	UPSTREAM mir-1017 INTRON nAChRalpha2
X	5338528	X_5338528_SNP [dm3] X_5444495_SNP [dm6]	A	C	5.303e^-4	1	INTERGENIC
3R	6544144	3R_6544144_SNP [dm3] 3R_10718422_SNP [dm6]	G	A	5.305e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12291038	3L_12291038_SNP [dm3] 3L_12297938_SNP [dm6]	A	T	5.308e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4758449	3L_4758449_SNP [dm3] 3L_4758449_SNP [dm6]	C	A	5.315e^-4	1	UTR_3_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	14884588	2R_14884588_SNP [dm3] 2R_18997083_SNP [dm6]	A	G	5.318e^-4	1	INTRON tn	TF binding site mE1_TFBS_cad
3L	11891394	3L_11891394_SNP [dm3] 3L_11898294_SNP [dm6]	A	G	5.331e^-4	1	UPSTREAM CR43624 INTRON CG44837
3R	9174258	3R_9174258_SNP [dm3] 3R_13348536_SNP [dm6]	A	T	5.339e^-4	1	INTERGENIC
X	17193160	X_17193160_SNP [dm3] X_17299127_SNP [dm6]	A	C	5.339e^-4	1	INTRON CG5445 & 1 other
3R	17279139	3R_17279139_SNP [dm3] 3R_21453417_SNP [dm6]	T	C	5.343e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6656470	2R_6656470_SNP [dm3] 2R_10768965_SNP [dm6]	T	C	5.347e^-4	1	INTRON CG33144
3L	14597067	3L_14597067_SNP [dm3] 3L_14603967_SNP [dm6]	A	T	5.349e^-4	1	INTERGENIC
3R	13618022	3R_13618022_SNP [dm3] 3R_17792300_SNP [dm6]	C	T	5.351e^-4	1	INTRON CG43102
2R	18011254	2R_18011254_SNP [dm3] 2R_22123749_SNP [dm6]	T	G	5.361e^-4	1	NON_SYNONYMOUS_CODING mei-S332 DOWNSTREAM GM130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13732151	2L_13732151_SNP [dm3] 2L_13732151_SNP [dm6]	C	G	5.368e^-4	1	INTERGENIC
X	8723912	X_8723912_SNP [dm3] X_8829879_SNP [dm6]	A	G	5.370e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20968253	2L_20968253_SNP [dm3] 2L_20968253_SNP [dm6]	A	T	5.379e^-4	1	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	17588422	X_17588422_SNP [dm3] X_17694389_SNP [dm6]	G	A	5.384e^-4	1	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15104668	3R_15104668_SNP [dm3] 3R_19278946_SNP [dm6]	G	C	5.387e^-4	1	EXON CR44173
2R	14804480	2R_14804480_SNP [dm3] 2R_18916975_SNP [dm6]	C	G	5.389e^-4	1	INTRON sano
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	5.390e^-4	1	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10318193	2R_10318193_SNP [dm3] 2R_14430688_SNP [dm6]	A	G	5.390e^-4	1	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13289722	3R_13289722_SNP [dm3] 3R_17464000_SNP [dm6]	C	T	5.405e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16577883	2L_16577883_SNP [dm3] 2L_16577883_SNP [dm6]	A	T	5.407e^-4	1	INTRON CG42389
3L	15823502	3L_15823502_SNP [dm3] 3L_15830402_SNP [dm6]	C	T	5.408e^-4	1	SYNONYMOUS_CODING dbo
2L	10189858	2L_10189858_SNP [dm3] 2L_10189858_SNP [dm6]	C	T	5.411e^-4	1	UTR_3_PRIME CG31874 INTRON Sur	TF binding site mE1_TFBS_cad
2R	18531105	2R_18531105_SNP [dm3] 2R_22643600_SNP [dm6]	G	C	5.413e^-4	1	SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
3L	6859960	3L_6859960_SNP [dm3] 3L_6866860_SNP [dm6]	C	T	5.414e^-4	1	UPSTREAM CR45115 INTERGENIC
2R	19797547	2R_19797547_SNP [dm3] 2R_23910024_SNP [dm6]	T	C	5.430e^-4	1	UPSTREAM kcc INTRON kcc
2R	9715344	2R_9715344_SNP [dm3] 2R_13827839_SNP [dm6]	G	C	5.436e^-4	1	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
3L	4600425	3L_4600425_SNP [dm3] 3L_4600425_SNP [dm6]	C	T	5.454e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2771405	3R_2771405_SNP [dm3] 3R_6945683_SNP [dm6]	G	T	5.467e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10834507	2L_10834507_SNP [dm3] 2L_10834507_SNP [dm6]	C	T	5.478e^-4	1	INTRON Nos
2L	14690610	2L_14690610_SNP [dm3] 2L_14690610_SNP [dm6]	T	C	5.479e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6546862	3L_6546862_SNP [dm3] 3L_6553762_SNP [dm6]	C	T	5.479e^-4	1	INTRON CG18769
3R	3144808	3R_3144808_SNP [dm3] 3R_7319086_SNP [dm6]	A	T	5.480e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14093865	2R_14093865_SNP [dm3] 2R_18206360_SNP [dm6]	G	A	5.489e^-4	1	INTERGENIC
X	5338470	X_5338470_SNP [dm3] X_5444437_SNP [dm6]	A	G	5.503e^-4	1	INTERGENIC
2L	3268266	2L_3268266_SNP [dm3] 2L_3268266_SNP [dm6]	A	T	5.505e^-4	1	UPSTREAM CR44484 INTERGENIC
2R	10560607	2R_10560607_SNP [dm3] 2R_14673102_SNP [dm6]	C	T	5.507e^-4	1	INTRON mspo
2R	20497272	2R_20497272_SNP [dm3] 2R_24609749_SNP [dm6]	G	A	5.510e^-4	1	SYNONYMOUS_CODING CG42360 DOWNSTREAM CG42361	TF binding site mE1_TFBS_HSA
X	17298009	X_17298009_SNP [dm3] X_17403976_SNP [dm6]	A	T	5.512e^-4	1	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	5305520	3R_5305520_SNP [dm3] 3R_9479798_SNP [dm6]	C	T	5.519e^-4	1	INTRON CG16779
3R	13798160	3R_13798160_SNP [dm3] 3R_17972438_SNP [dm6]	A	G	5.530e^-4	1	INTRON cpo
3L	12384689	3L_12384689_INS [dm3] 3L_12391589_INS [dm6]	G	GGA	5.531e^-4	1	UPSTREAM Ncc69 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10373375	2L_10373375_SNP [dm3] 2L_10373375_SNP [dm6]	C	G	5.533e^-4	1	UTR_3_PRIME CG33303 DOWNSTREAM CG33303 INTRON rho-5
3L	19672525	3L_19672525_SNP [dm3] 3L_19679425_SNP [dm6]	G	C	5.534e^-4	1	EXON CR44678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14093831	2R_14093831_SNP [dm3] 2R_18206326_SNP [dm6]	A	T	5.537e^-4	1	INTERGENIC
3R	14216015	3R_14216015_DEL [dm3] 3R_18390293_DEL [dm6]	GT	G	5.558e^-4	1	UPSTREAM Vha100-4 DOWNSTREAM Vha100-2 INTERGENIC
2L	14960510	2L_14960510_SNP [dm3] 2L_14960510_SNP [dm6]	A	C	5.567e^-4	1	INTRON CG42313
2R	6310804	2R_6310804_SNP [dm3] 2R_10423299_SNP [dm6]	T	A	5.575e^-4	1	DOWNSTREAM CG33474 INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16329767	3R_16329767_SNP [dm3] 3R_20504045_SNP [dm6]	C	A	5.581e^-4	1	UPSTREAM MtnB & 1 other INTERGENIC
3R	23887526	3R_23887526_SNP [dm3] 3R_28061804_SNP [dm6]	G	C	5.582e^-4	1	INTRON CG34362
3R	16745114	3R_16745114_SNP [dm3] 3R_20919392_SNP [dm6]	T	C	5.601e^-4	1	INTRON CG31191 & 1 other
3R	12759316	3R_12759316_SNP [dm3] 3R_16933594_SNP [dm6]	C	T	5.603e^-4	1	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	1240904	X_1240904_SNP [dm3] X_1346871_SNP [dm6]	A	C	5.605e^-4	1	UPSTREAM Tsp2A & 1 other INTRON CG11418 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Cuticul_x_C23_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results