DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.110e^-17)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07986

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.1263	0.0283
In_3R_K	13.0271	0.0015

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2325 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	8.432e^-7	0.403	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4276537	2L_4276537_SNP [dm3] 2L_4276537_SNP [dm6]	T	C	8.761e^-7	0.403	INTERGENIC
2L	500906	2L_500906_SNP [dm3] 2L_500906_SNP [dm6]	A	G	9.726e^-7	0.403	INTRON ush
2R	9204071	2R_9204071_SNP [dm3] 2R_13316566_SNP [dm6]	C	T	1.056e^-6	0.403	INTERGENIC
3L	10020828	3L_10020828_SNP [dm3] 3L_10027728_SNP [dm6]	T	C	1.075e^-6	0.403	INTRON dpr6
3L	7597033	3L_7597033_SNP [dm3] 3L_7603933_SNP [dm6]	A	G	1.709e^-6	0.425	NON_SYNONYMOUS_CODING CG33275
X	5015413	X_5015413_SNP [dm3] X_5121380_SNP [dm6]	C	T	2.346e^-6	0.425	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	5015398	X_5015398_SNP [dm3] X_5121365_SNP [dm6]	T	C	2.419e^-6	0.425	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	5015360	X_5015360_SNP [dm3] X_5121327_SNP [dm6]	G	A	2.569e^-6	0.425	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10021031	3L_10021031_SNP [dm3] 3L_10027931_SNP [dm6]	A	T	2.742e^-6	0.425	INTRON dpr6
3L	4567422	3L_4567422_SNP [dm3] 3L_4567422_SNP [dm6]	T	G	3.323e^-6	0.425	INTRON CG42540
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	3.336e^-6	0.425	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	19047091	3L_19047091_DEL [dm3] 3L_19053991_DEL [dm6]	ATT	A	3.745e^-6	0.425	UPSTREAM CG43407 INTERGENIC
3L	18416292	3L_18416292_SNP [dm3] 3L_18423192_SNP [dm6]	T	C	3.832e^-6	0.425	INTERGENIC
2L	9011509	2L_9011509_MNP [dm3] 2L_9011509_MNP [dm6]	CAA	ATG	3.873e^-6	0.425	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	5015391	X_5015391_SNP [dm3] X_5121358_SNP [dm6]	G	T	3.953e^-6	0.425	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	19047088	3L_19047088_SNP [dm3] 3L_19053988_SNP [dm6]	T	A	4.013e^-6	0.425	UPSTREAM CG43407 INTERGENIC
3L	19047062	3L_19047062_DEL [dm3] 3L_19053962_DEL [dm6]	ATTAATTTTATA...	A	4.074e^-6	0.425	UPSTREAM CG43407 INTERGENIC
2L	9011522	2L_9011522_DEL [dm3] 2L_9011522_DEL [dm6]	AAA	A	4.361e^-6	0.431	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9352766	2L_9352766_SNP [dm3] 2L_9352766_SNP [dm6]	C	T	5.767e^-6	0.455	INTERGENIC
3R	23112362	3R_23112362_SNP [dm3] 3R_27286640_SNP [dm6]	C	T	5.795e^-6	0.455	SYNONYMOUS_CODING CG3368 DOWNSTREAM bigmax	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9011520	2L_9011520_SNP [dm3] 2L_9011520_SNP [dm6]	A	T	5.803e^-6	0.455	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	18415495	3L_18415495_SNP [dm3] 3L_18422395_SNP [dm6]	A	T	5.982e^-6	0.455	INTERGENIC
2L	9011506	2L_9011506_SNP [dm3] 2L_9011506_SNP [dm6]	T	C	6.115e^-6	0.455	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3R	23540031	3R_23540031_SNP [dm3] 3R_27714309_SNP [dm6]	T	G	6.247e^-6	0.455	INTERGENIC
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	6.304e^-6	0.455	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23540032	3R_23540032_SNP [dm3] 3R_27714310_SNP [dm6]	C	A	7.482e^-6	0.52	INTERGENIC
X	5015404	X_5015404_SNP [dm3] X_5121371_SNP [dm6]	T	C	8.111e^-6	0.531	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3R	19891862	3R_19891862_DEL [dm3] 3R_24066140_DEL [dm6]	TT	T	8.484e^-6	0.531	UTR_3_PRIME 4EHP INTRON 4EHP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23386777	3R_23386777_SNP [dm3] 3R_27561055_SNP [dm6]	G	A	8.517e^-6	0.531	UPSTREAM snmRNA:157 DOWNSTREAM wdb INTRON CG5646
X	5015411	X_5015411_SNP [dm3] X_5121378_SNP [dm6]	A	C	8.867e^-6	0.531	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8812824	3L_8812824_SNP [dm3] 3L_8819724_SNP [dm6]	C	A	9.215e^-6	0.531	INTERGENIC
2R	16962541	2R_16962541_SNP [dm3] 2R_21075036_SNP [dm6]	A	G	9.672e^-6	0.531	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
2R	3019420	2R_3019420_SNP [dm3] 2R_7131915_SNP [dm6]	G	C	9.737e^-6	0.531	NON_SYNONYMOUS_CODING Cyp9b2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6735754	2L_6735754_SNP [dm3] 2L_6735754_SNP [dm6]	T	C	9.910e^-6	0.531	DOWNSTREAM TTLL3A INTRON TTLL3B	TF binding site BDTNP1_TFBS_twi
3R	3264012	3R_3264012_SNP [dm3] 3R_7438290_SNP [dm6]	T	G	1.123e^-5	0.56	INTERGENIC
3R	3281894	3R_3281894_SNP [dm3] 3R_7456172_SNP [dm6]	C	T	1.143e^-5	0.56	INTERGENIC
X	5015402	X_5015402_SNP [dm3] X_5121369_SNP [dm6]	G	A	1.172e^-5	0.56	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	7596580	3L_7596580_SNP [dm3] 3L_7603480_SNP [dm6]	G	A	1.279e^-5	0.56	SYNONYMOUS_CODING CG33275
2L	15647780	2L_15647780_SNP [dm3] 2L_15647780_SNP [dm6]	C	A	1.315e^-5	0.56	UTR_3_PRIME CG4587
3R	24778733	3R_24778733_SNP [dm3] 3R_28953011_SNP [dm6]	G	C	1.316e^-5	0.56	INTRON CG14521
2L	9345433	2L_9345433_SNP [dm3] 2L_9345433_SNP [dm6]	C	T	1.316e^-5	0.56	DOWNSTREAM CG3748 INTERGENIC
3L	8214445	3L_8214445_SNP [dm3] 3L_8221345_SNP [dm6]	A	C	1.379e^-5	0.56	UPSTREAM CG13678 INTERGENIC
3L	3443612	3L_3443612_SNP [dm3] 3L_3443612_SNP [dm6]	G	T	1.387e^-5	0.56	INTRON eIF5B
2L	102241	2L_102241_INS [dm3] 2L_102241_INS [dm6]	T	TGT	1.391e^-5	0.56	UPSTREAM CG11377 DOWNSTREAM Zir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	1586265	2L_1586265_SNP [dm3] 2L_1586265_SNP [dm6]	T	C	1.425e^-5	0.56	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna
2R	4063447	2R_4063447_SNP [dm3] 2R_8175942_SNP [dm6]	A	C	1.436e^-5	0.56	INTRON LRP1	TF binding site mE1_TFBS_eve
X	7724786	X_7724786_SNP [dm3] X_7830753_SNP [dm6]	G	A	1.463e^-5	0.56	INTRON CG1402
3R	3263985	3R_3263985_INS [dm3] 3R_7438263_INS [dm6]	T	TAT	1.487e^-5	0.56	INTERGENIC
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.494e^-5	0.56	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
3R	25537608	3R_25537608_SNP [dm3] 3R_29711886_SNP [dm6]	A	C	1.585e^-5	0.58	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13994470	3L_13994470_SNP [dm3] 3L_14001370_SNP [dm6]	A	C	1.609e^-5	0.58	SYNONYMOUS_CODING CG8783 UPSTREAM upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	13450246	2R_13450246_SNP [dm3] 2R_17562741_SNP [dm6]	T	C	1.708e^-5	0.604	UTR_3_PRIME Klp54D UPSTREAM CG43324 INTRON Klp54D
X	4496898	X_4496898_SNP [dm3] X_4602865_SNP [dm6]	C	G	1.766e^-5	0.606	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2R	4023304	2R_4023304_DEL [dm3] 2R_8135799_DEL [dm6]	TCCGAAAACCGA...	T	1.776e^-5	0.606	UPSTREAM Obp44a INTERGENIC
2L	3801376	2L_3801376_SNP [dm3] 2L_3801376_SNP [dm6]	C	A	1.858e^-5	0.616	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_chinmo
2L	8530438	2L_8530438_SNP [dm3] 2L_8530438_SNP [dm6]	T	A	1.884e^-5	0.616	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	19047090	3L_19047090_SNP [dm3] 3L_19053990_SNP [dm6]	G	A	1.947e^-5	0.616	UPSTREAM CG43407 INTERGENIC
3L	15733118	3L_15733118_SNP [dm3] 3L_15740018_SNP [dm6]	A	T	1.950e^-5	0.616	INTERGENIC
2R	16962498	2R_16962498_SNP [dm3] 2R_21074993_SNP [dm6]	C	T	2.002e^-5	0.616	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
X	14540385	X_14540385_SNP [dm3] X_14646352_SNP [dm6]	G	C	2.068e^-5	0.616	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14985591	2R_14985591_SNP [dm3] 2R_19098086_SNP [dm6]	C	A	2.097e^-5	0.616	INTRON 5-HT1A
2R	3428587	2R_3428587_SNP [dm3] 2R_7541082_SNP [dm6]	T	A	2.099e^-5	0.616	INTRON Corin
2L	8438039	2L_8438039_SNP [dm3] 2L_8438039_SNP [dm6]	T	C	2.102e^-5	0.616	UPSTREAM mus201 & 1 other DOWNSTREAM Chrac-14 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
X	2485767	X_2485767_SNP [dm3] X_2591734_SNP [dm6]	C	A	2.147e^-5	0.619	UPSTREAM egh INTRON egh
2L	15647752	2L_15647752_SNP [dm3] 2L_15647752_SNP [dm6]	G	A	2.237e^-5	0.619	UTR_3_PRIME CG4587
2L	13051564	2L_13051564_SNP [dm3] 2L_13051564_SNP [dm6]	G	T	2.274e^-5	0.619	INTRON CG9932
2R	3022697	2R_3022697_SNP [dm3] 2R_7135192_SNP [dm6]	T	G	2.419e^-5	0.619	DOWNSTREAM CR44443 INTERGENIC
X	5015420	X_5015420_SNP [dm3] X_5121387_SNP [dm6]	C	T	2.426e^-5	0.619	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26082767	3R_26082767_SNP [dm3] 3R_30257045_SNP [dm6]	C	A	2.476e^-5	0.619	INTERGENIC
3L	8747098	3L_8747098_SNP [dm3] 3L_8753998_SNP [dm6]	T	A	2.503e^-5	0.619	UTR_5_PRIME Fhos UPSTREAM Fhos
3L	19047084	3L_19047084_SNP [dm3] 3L_19053984_SNP [dm6]	A	C	2.528e^-5	0.619	UPSTREAM CG43407 INTERGENIC
3L	19047085	3L_19047085_SNP [dm3] 3L_19053985_SNP [dm6]	T	A	2.528e^-5	0.619	UPSTREAM CG43407 INTERGENIC
X	12215717	X_12215717_SNP [dm3] X_12321684_SNP [dm6]	T	A	2.537e^-5	0.619	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11685400	3R_11685400_SNP [dm3] 3R_15859678_SNP [dm6]	G	A	2.544e^-5	0.619	SYNONYMOUS_CODING CG31183 UPSTREAM CG9632	TF binding site mE1_TFBS_chinmo
2L	6736003	2L_6736003_SNP [dm3] 2L_6736003_SNP [dm6]	A	T	2.569e^-5	0.619	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A
X	15531595	X_15531595_SNP [dm3] X_15637562_SNP [dm6]	C	T	2.606e^-5	0.619	DOWNSTREAM CR44423 INTERGENIC
X	12217599	X_12217599_SNP [dm3] X_12323566_SNP [dm6]	T	G	2.653e^-5	0.619	INTRON Ten-a
2L	8438102	2L_8438102_SNP [dm3] 2L_8438102_SNP [dm6]	C	T	2.664e^-5	0.619	UPSTREAM mus201 & 1 other DOWNSTREAM Chrac-14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3873175	2R_3873175_SNP [dm3] 2R_7985670_SNP [dm6]	A	T	2.664e^-5	0.619	NON_SYNONYMOUS_CODING ACC INTRON ACC
2L	1748675	2L_1748675_SNP [dm3] 2L_1748675_SNP [dm6]	A	T	2.701e^-5	0.619	INTRON CG17646
3R	23773941	3R_23773941_SNP [dm3] 3R_27948219_SNP [dm6]	A	G	2.711e^-5	0.619	UPSTREAM Gp93 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20049450	2R_20049450_SNP [dm3] 2R_24161927_SNP [dm6]	G	A	2.768e^-5	0.619	UPSTREAM CG3328 DOWNSTREAM spag INTERGENIC
2L	6735805	2L_6735805_SNP [dm3] 2L_6735805_SNP [dm6]	T	A	2.837e^-5	0.619	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A
3L	14012858	3L_14012858_SNP [dm3] 3L_14019758_SNP [dm6]	T	A	2.852e^-5	0.619	UTR_3_PRIME upSET DOWNSTREAM ptip	TF binding site mE1_TFBS_kn
2L	6137197	2L_6137197_SNP [dm3] 2L_6137197_SNP [dm6]	C	G	2.870e^-5	0.619	INTERGENIC
X	16430802	X_16430802_SNP [dm3] X_16536769_SNP [dm6]	A	G	2.871e^-5	0.619	INTERGENIC
2L	6137229	2L_6137229_SNP [dm3] 2L_6137229_SNP [dm6]	C	A	2.925e^-5	0.621	INTERGENIC
2L	11141631	2L_11141631_SNP [dm3] 2L_11141631_SNP [dm6]	A	T	2.949e^-5	0.621	SYNONYMOUS_CODING Gyc32E
3R	26082771	3R_26082771_SNP [dm3] 3R_30257049_SNP [dm6]	C	A	3.085e^-5	0.643	INTERGENIC
X	17708281	X_17708281_SNP [dm3] X_17814248_SNP [dm6]	G	A	3.148e^-5	0.646	DOWNSTREAM OdsH INTERGENIC
2L	11140612	2L_11140612_SNP [dm3] 2L_11140612_SNP [dm6]	G	A	3.196e^-5	0.646	SPLICE_SITE_REGION Gyc32E INTRON Gyc32E
2L	15458063	2L_15458063_SNP [dm3] 2L_15458063_SNP [dm6]	T	C	3.254e^-5	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7596654	3L_7596654_SNP [dm3] 3L_7603554_SNP [dm6]	A	T	3.273e^-5	0.646	INTRON CG33275
2L	6137436	2L_6137436_SNP [dm3] 2L_6137436_SNP [dm6]	C	G	3.276e^-5	0.646	INTERGENIC
X	5015321	X_5015321_DEL [dm3] X_5121288_DEL [dm6]	GTG	G	3.306e^-5	0.646	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3R	21235098	3R_21235098_SNP [dm3] 3R_25409376_SNP [dm6]	C	A	3.371e^-5	0.65	INTRON Fur1
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	3.451e^-5	0.65	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8620971	2L_8620971_SNP [dm3] 2L_8620971_SNP [dm6]	C	T	3.459e^-5	0.65	DOWNSTREAM tRNA:CR31602 INTRON Sema-1a
2L	6136259	2L_6136259_SNP [dm3] 2L_6136259_SNP [dm6]	A	T	3.463e^-5	0.65	INTERGENIC
2L	11140349	2L_11140349_SNP [dm3] 2L_11140349_SNP [dm6]	G	C	3.545e^-5	0.656	SYNONYMOUS_CODING Gyc32E
3L	12489663	3L_12489663_SNP [dm3] 3L_12496563_SNP [dm6]	T	A	3.568e^-5	0.656	INTRON CG10657
2L	8378775	2L_8378775_SNP [dm3] 2L_8378775_SNP [dm6]	T	C	3.678e^-5	0.665	NON_SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14138967	3L_14138967_SNP [dm3] 3L_14145867_SNP [dm6]	T	C	3.710e^-5	0.665	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	4017765	2R_4017765_SNP [dm3] 2R_8130260_SNP [dm6]	C	A	3.787e^-5	0.665	SYNONYMOUS_CODING Pbp49 UTR_3_PRIME CG42516 DOWNSTREAM Socs44A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19131508	3R_19131508_SNP [dm3] 3R_23305786_SNP [dm6]	G	T	3.810e^-5	0.665	INTRON pnt
3L	3188074	3L_3188074_SNP [dm3] 3L_3188074_SNP [dm6]	C	A	3.812e^-5	0.665	UTR_3_PRIME CG14957 & 1 other DOWNSTREAM CG32284
2L	8384629	2L_8384629_SNP [dm3] 2L_8384629_SNP [dm6]	C	T	3.832e^-5	0.665	UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 DOWNSTREAM Rcd4 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13669382	3L_13669382_SNP [dm3] 3L_13676282_SNP [dm6]	A	T	3.878e^-5	0.667	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	18213574	X_18213574_SNP [dm3] X_18319541_SNP [dm6]	A	G	3.944e^-5	0.668	INTRON CG6023
3L	12178822	3L_12178822_SNP [dm3] 3L_12185722_SNP [dm6]	A	C	3.953e^-5	0.668	UPSTREAM CG6910 INTRON CG6910
2R	13260929	2R_13260929_SNP [dm3] 2R_17373424_SNP [dm6]	T	A	3.992e^-5	0.669	INTRON mbl	TF binding site BDTNP1_TFBS_twi
X	5957343	X_5957343_SNP [dm3] X_6063310_SNP [dm6]	C	A	4.035e^-5	0.67	INTRON CG5921
3R	11685295	3R_11685295_SNP [dm3] 3R_15859573_SNP [dm6]	G	A	4.111e^-5	0.676	SYNONYMOUS_CODING CG31183 UPSTREAM CG9632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2070166	X_2070166_SNP [dm3] X_2176133_SNP [dm6]	A	T	4.207e^-5	0.676	UTR_5_PRIME Cyp4d2 UPSTREAM Cyp4d14 & 1 other DOWNSTREAM CR45479 EXON CR44690	TF binding site mE1_TFBS_cnc
3L	14146968	3L_14146968_SNP [dm3] 3L_14153868_SNP [dm6]	G	T	4.285e^-5	0.676	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	18385420	3L_18385420_SNP [dm3] 3L_18392320_SNP [dm6]	T	G	4.292e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18377380	3L_18377380_SNP [dm3] 3L_18384280_SNP [dm6]	T	A	4.303e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18377381	3L_18377381_DEL [dm3] 3L_18384281_DEL [dm6]	TT	T	4.303e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1595841	2L_1595841_SNP [dm3] 2L_1595841_SNP [dm6]	A	T	4.327e^-5	0.676	INTRON haf & 1 other
2R	13450273	2R_13450273_SNP [dm3] 2R_17562768_SNP [dm6]	C	T	4.389e^-5	0.679	UTR_3_PRIME Klp54D UPSTREAM CG43324 INTRON Klp54D
2R	18360875	2R_18360875_SNP [dm3] 2R_22473370_SNP [dm6]	T	C	4.418e^-5	0.679	SPLICE_SITE_REGION CG45062 UTR_3_PRIME CG45062 DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad
2R	16962601	2R_16962601_SNP [dm3] 2R_21075096_SNP [dm6]	T	C	4.458e^-5	0.68	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
3L	8214437	3L_8214437_SNP [dm3] 3L_8221337_SNP [dm6]	T	G	4.564e^-5	0.683	UPSTREAM CG13678 INTERGENIC
2R	15053506	2R_15053506_SNP [dm3] 2R_19166001_SNP [dm6]	T	A	4.661e^-5	0.683	UTR_5_PRIME CG10737 INTRON CG10737
2L	10553407	2L_10553407_SNP [dm3] 2L_10553407_SNP [dm6]	A	G	4.667e^-5	0.683	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7267130	3L_7267130_SNP [dm3] 3L_7274030_SNP [dm6]	T	A	4.673e^-5	0.683	INTRON unc-13-4A
3R	14130612	3R_14130612_SNP [dm3] 3R_18304890_SNP [dm6]	G	C	4.690e^-5	0.683	INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12556449	2L_12556449_SNP [dm3] 2L_12556449_SNP [dm6]	A	G	4.695e^-5	0.683	INTERGENIC
2L	18017811	2L_18017811_SNP [dm3] 2L_18017811_SNP [dm6]	T	A	4.754e^-5	0.684	INTRON rdo
3L	15733120	3L_15733120_SNP [dm3] 3L_15740020_SNP [dm6]	C	G	4.778e^-5	0.684	INTERGENIC
X	10500063	X_10500063_SNP [dm3] X_10606030_SNP [dm6]	C	G	4.848e^-5	0.689	NON_SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_twi
3R	7586221	3R_7586221_DEL [dm3] 3R_11760499_DEL [dm6]	TAGTT	T	4.956e^-5	0.693	UPSTREAM Lk6 INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6731918	2L_6731918_SNP [dm3] 2L_6731918_SNP [dm6]	C	A	4.960e^-5	0.693	UTR_3_PRIME Liprin-alpha UPSTREAM TTLL3B DOWNSTREAM Liprin-alpha
3L	12780476	3L_12780476_SNP [dm3] 3L_12787376_SNP [dm6]	G	T	5.064e^-5	0.693	INTRON Atg1
3L	14013641	3L_14013641_SNP [dm3] 3L_14020541_SNP [dm6]	A	G	5.081e^-5	0.693	UTR_3_PRIME ptip DOWNSTREAM upSET	TF binding site mE1_TFBS_kn
2L	8382058	2L_8382058_SNP [dm3] 2L_8382058_SNP [dm6]	G	A	5.127e^-5	0.693	SYNONYMOUS_CODING CG13392 UPSTREAM Aats-ala & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20763576	3R_20763576_SNP [dm3] 3R_24937854_SNP [dm6]	T	C	5.131e^-5	0.693	SYNONYMOUS_CODING Osbp DOWNSTREAM ssh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3022696	2R_3022696_SNP [dm3] 2R_7135191_SNP [dm6]	A	T	5.136e^-5	0.693	DOWNSTREAM CR44443 INTERGENIC
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	5.169e^-5	0.693	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8294238	2L_8294238_SNP [dm3] 2L_8294238_SNP [dm6]	A	G	5.224e^-5	0.695	UPSTREAM CR43752 INTRON Btk29A	TF binding site mE1_TFBS_cad
2L	500944	2L_500944_SNP [dm3] 2L_500944_SNP [dm6]	C	T	5.265e^-5	0.695	INTRON ush
2L	6135850	2L_6135850_SNP [dm3] 2L_6135850_SNP [dm6]	G	A	5.503e^-5	0.721	INTERGENIC
2L	6797277	2L_6797277_SNP [dm3] 2L_6797277_SNP [dm6]	G	T	5.537e^-5	0.721	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	18377394	3L_18377394_SNP [dm3] 3L_18384294_SNP [dm6]	T	A	5.655e^-5	0.723	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	5.702e^-5	0.723	INTRON Cad87A
3R	27130815	3R_27130815_SNP [dm3] 3R_31305093_SNP [dm6]	T	A	5.714e^-5	0.723	UTR_5_PRIME CG11340
2L	9347852	2L_9347852_SNP [dm3] 2L_9347852_SNP [dm6]	G	A	5.728e^-5	0.723	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	6135781	2L_6135781_SNP [dm3] 2L_6135781_SNP [dm6]	C	T	5.816e^-5	0.723	INTERGENIC
2L	6135796	2L_6135796_SNP [dm3] 2L_6135796_SNP [dm6]	C	G	5.816e^-5	0.723	INTERGENIC
X	13239377	X_13239377_SNP [dm3] X_13345344_SNP [dm6]	G	A	5.851e^-5	0.723	UPSTREAM CR45708 DOWNSTREAM CR45709 INTERGENIC
2L	8386890	2L_8386890_SNP [dm3] 2L_8386890_SNP [dm6]	C	T	5.867e^-5	0.723	SYNONYMOUS_CODING CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17575904	2L_17575904_SNP [dm3] 2L_17575904_SNP [dm6]	C	A	5.967e^-5	0.723	UPSTREAM CR45358 INTERGENIC
2L	10703243	2L_10703243_SNP [dm3] 2L_10703243_SNP [dm6]	G	T	6.033e^-5	0.723	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3R	12043010	3R_12043010_SNP [dm3] 3R_16217288_SNP [dm6]	G	A	6.075e^-5	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14976249	X_14976249_SNP [dm3] X_15082216_SNP [dm6]	C	A	6.092e^-5	0.723	UTR_3_PRIME CG33177 UPSTREAM CR44662 & 1 other DOWNSTREAM CR44960
2L	6901592	2L_6901592_SNP [dm3] 2L_6901592_SNP [dm6]	T	A	6.105e^-5	0.723	UPSTREAM mir-932 INTRON Nlg2
2R	13449261	2R_13449261_SNP [dm3] 2R_17561756_SNP [dm6]	T	C	6.113e^-5	0.723	SYNONYMOUS_CODING Klp54D
2L	10235809	2L_10235809_SNP [dm3] 2L_10235809_SNP [dm6]	C	G	6.235e^-5	0.723	SPLICE_SITE_REGION mthl15 INTRON mthl15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5367341	X_5367341_SNP [dm3] X_5473308_SNP [dm6]	G	A	6.259e^-5	0.723	INTRON SPR
3L	12489628	3L_12489628_SNP [dm3] 3L_12496528_SNP [dm6]	A	T	6.270e^-5	0.723	INTRON CG10657
2L	11712743	2L_11712743_DEL [dm3] 2L_11712743_DEL [dm6]	CTTGAAAAT	C	6.311e^-5	0.723	INTERGENIC
X	7965885	X_7965885_SNP [dm3] X_8071852_SNP [dm6]	C	T	6.318e^-5	0.723	SYNONYMOUS_CODING Upf2
3R	20820516	3R_20820516_SNP [dm3] 3R_24994794_SNP [dm6]	A	C	6.340e^-5	0.723	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5015449	X_5015449_SNP [dm3] X_5121416_SNP [dm6]	A	G	6.467e^-5	0.723	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3R	19131525	3R_19131525_SNP [dm3] 3R_23305803_SNP [dm6]	C	T	6.527e^-5	0.723	INTRON pnt
2L	8533806	2L_8533806_SNP [dm3] 2L_8533806_SNP [dm6]	C	G	6.603e^-5	0.723	INTRON CG17834	TF binding site mE1_TFBS_cad
2L	10676724	2L_10676724_SNP [dm3] 2L_10676724_SNP [dm6]	A	G	6.648e^-5	0.723	UPSTREAM CG17104 INTERGENIC
2L	10676725	2L_10676725_SNP [dm3] 2L_10676725_SNP [dm6]	T	A	6.648e^-5	0.723	UPSTREAM CG17104 INTERGENIC
X	14540313	X_14540313_SNP [dm3] X_14646280_SNP [dm6]	T	C	6.665e^-5	0.723	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18360879	2R_18360879_SNP [dm3] 2R_22473374_SNP [dm6]	C	A	6.671e^-5	0.723	SPLICE_SITE_REGION CG45062 UTR_3_PRIME CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad
2L	13086723	2L_13086723_SNP [dm3] 2L_13086723_SNP [dm6]	G	A	6.675e^-5	0.723	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13086725	2L_13086725_SNP [dm3] 2L_13086725_SNP [dm6]	A	T	6.675e^-5	0.723	INTERGENIC	TF binding site mE1_TFBS_inv
2R	665578	2R_665578_SNP [dm3] 2R_4778073_SNP [dm6]	C	G	6.711e^-5	0.723	INTERGENIC	transposable element FlyBase
3R	19133087	3R_19133087_SNP [dm3] 3R_23307365_SNP [dm6]	A	T	6.840e^-5	0.725	INTRON pnt
3R	19836116	3R_19836116_SNP [dm3] 3R_24010394_SNP [dm6]	A	T	6.872e^-5	0.725	INTRON KrT95D
3L	8765879	3L_8765879_SNP [dm3] 3L_8772779_SNP [dm6]	T	A	6.928e^-5	0.725	INTRON Fhos
2R	10912445	2R_10912445_INS [dm3] 2R_15024940_INS [dm6]	C	CC	7.000e^-5	0.725	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl
2R	18035726	2R_18035726_SNP [dm3] 2R_22148221_SNP [dm6]	A	T	7.007e^-5	0.725	INTRON a
3R	19133296	3R_19133296_SNP [dm3] 3R_23307574_SNP [dm6]	C	T	7.024e^-5	0.725	INTRON pnt
2R	4023317	2R_4023317_MNP [dm3] 2R_8135812_MNP [dm6]	CTA	TAT	7.030e^-5	0.725	UPSTREAM Obp44a INTERGENIC
3R	8061660	3R_8061660_SNP [dm3] 3R_12235938_SNP [dm6]	T	C	7.212e^-5	0.725	NON_SYNONYMOUS_CODING Cyp313a2
3L	8074527	3L_8074527_SNP [dm3] 3L_8081427_SNP [dm6]	A	C	7.230e^-5	0.725	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3509151	2L_3509151_SNP [dm3] 2L_3509151_SNP [dm6]	A	T	7.386e^-5	0.725	UTR_3_PRIME CG31954 DOWNSTREAM CR45299 EXON CR45300
3R	10357516	3R_10357516_SNP [dm3] 3R_14531794_SNP [dm6]	C	T	7.473e^-5	0.725	INTRON Pde6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4023321	2R_4023321_SNP [dm3] 2R_8135816_SNP [dm6]	A	T	7.511e^-5	0.725	UPSTREAM Obp44a INTERGENIC
2L	4272465	2L_4272465_SNP [dm3] 2L_4272465_SNP [dm6]	G	C	7.516e^-5	0.725	INTERGENIC
2L	17575907	2L_17575907_INS [dm3] 2L_17575907_INS [dm6]	GA	ATGGCG	7.570e^-5	0.725	UPSTREAM CR45358 INTERGENIC
2L	6137459	2L_6137459_SNP [dm3] 2L_6137459_SNP [dm6]	T	C	7.628e^-5	0.725	INTERGENIC
2L	6735791	2L_6735791_SNP [dm3] 2L_6735791_SNP [dm6]	G	A	7.641e^-5	0.725	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A
2R	3022693	2R_3022693_SNP [dm3] 2R_7135188_SNP [dm6]	G	A	7.679e^-5	0.725	DOWNSTREAM CR44443 INTERGENIC
3L	10786078	3L_10786078_SNP [dm3] 3L_10792978_SNP [dm6]	A	T	7.691e^-5	0.725	INTERGENIC
X	2487694	X_2487694_SNP [dm3] X_2593661_SNP [dm6]	A	C	7.700e^-5	0.725	START_GAINED egh UTR_5_PRIME egh INTRON egh
3R	24787856	3R_24787856_SNP [dm3] 3R_28962134_SNP [dm6]	G	A	7.728e^-5	0.725	INTRON CG14521
2L	10209262	2L_10209262_SNP [dm3] 2L_10209262_SNP [dm6]	C	A	7.751e^-5	0.725	DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10866691	3L_10866691_SNP [dm3] 3L_10873591_SNP [dm6]	A	T	7.766e^-5	0.725	INTRON tna	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5976216	3R_5976216_SNP [dm3] 3R_10150494_SNP [dm6]	G	T	7.769e^-5	0.725	DOWNSTREAM CG34303 INTRON Invadolysin
3L	14016159	3L_14016159_SNP [dm3] 3L_14023059_SNP [dm6]	G	A	7.771e^-5	0.725	SYNONYMOUS_CODING ptip
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	7.844e^-5	0.725	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4873931	X_4873931_SNP [dm3] X_4979898_SNP [dm6]	T	C	7.912e^-5	0.725	INTRON CR44833
2L	7366686	2L_7366686_SNP [dm3] 2L_7366686_SNP [dm6]	C	T	7.923e^-5	0.725	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8336514	2R_8336514_SNP [dm3] 2R_12449009_SNP [dm6]	C	T	7.964e^-5	0.725	SYNONYMOUS_CODING Dyb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23594350	3R_23594350_SNP [dm3] 3R_27768628_SNP [dm6]	A	T	7.990e^-5	0.725	UTR_3_PRIME CG34353 DOWNSTREAM CG34353
3L	3366059	3L_3366059_SNP [dm3] 3L_3366059_SNP [dm6]	C	A	8.003e^-5	0.725	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	20206705	2R_20206705_SNP [dm3] 2R_24319182_SNP [dm6]	G	A	8.036e^-5	0.725	INTERGENIC
3L	14002050	3L_14002050_SNP [dm3] 3L_14008950_SNP [dm6]	A	G	8.090e^-5	0.725	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19835961	3R_19835961_SNP [dm3] 3R_24010239_SNP [dm6]	G	A	8.148e^-5	0.725	INTRON KrT95D
3L	14002170	3L_14002170_SNP [dm3] 3L_14009070_SNP [dm6]	A	C	8.222e^-5	0.725	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8313284	3L_8313284_SNP [dm3] 3L_8320184_SNP [dm6]	G	A	8.247e^-5	0.725	UPSTREAM CG13670 INTERGENIC
2R	17944607	2R_17944607_SNP [dm3] 2R_22057102_SNP [dm6]	G	A	8.256e^-5	0.725	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4911554	2L_4911554_SNP [dm3] 2L_4911554_SNP [dm6]	C	A	8.274e^-5	0.725	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7480994	3L_7480994_INS [dm3] 3L_7487894_INS [dm6]	T	TC	8.307e^-5	0.725	UTR_3_PRIME mthl6
2L	3242131	2L_3242131_SNP [dm3] 2L_3242131_SNP [dm6]	A	C	8.355e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14016621	3L_14016621_SNP [dm3] 3L_14023521_SNP [dm6]	T	C	8.420e^-5	0.725	INTRON ptip	TF binding site mE1_TFBS_chinmo
X	5611332	X_5611332_DEL [dm3] X_5717299_DEL [dm6]	TGCTAGAT	T	8.455e^-5	0.725	INTRON CG33080
X	2485252	X_2485252_SNP [dm3] X_2591219_SNP [dm6]	G	A	8.461e^-5	0.725	UPSTREAM egh INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13978180	3L_13978180_SNP [dm3] 3L_13985080_SNP [dm6]	A	G	8.482e^-5	0.725	INTRON CG17364	TF binding site mE1_TFBS_cad
2L	6736009	2L_6736009_SNP [dm3] 2L_6736009_SNP [dm6]	T	C	8.488e^-5	0.725	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A
2R	18360869	2R_18360869_SNP [dm3] 2R_22473364_SNP [dm6]	T	C	8.567e^-5	0.725	UTR_3_PRIME CG45062 DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad
3R	9355069	3R_9355069_SNP [dm3] 3R_13529347_SNP [dm6]	T	A	8.669e^-5	0.725	UTR_5_PRIME CG42778	TF binding site mE1_TFBS_HSA
3L	8741996	3L_8741996_SNP [dm3] 3L_8748896_SNP [dm6]	G	A	8.683e^-5	0.725	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	14138989	3L_14138989_SNP [dm3] 3L_14145889_SNP [dm6]	T	A	8.699e^-5	0.725	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	8381886	2L_8381886_DEL [dm3] 2L_8381886_DEL [dm6]	GTA	G	8.700e^-5	0.725	UTR_3_PRIME CG13392 UPSTREAM Aats-ala & 1 other DOWNSTREAM CG13392	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_Ubx
2L	9352686	2L_9352686_SNP [dm3] 2L_9352686_SNP [dm6]	T	G	8.766e^-5	0.725	INTERGENIC
2L	10186253	2L_10186253_SNP [dm3] 2L_10186253_SNP [dm6]	A	G	8.838e^-5	0.725	INTRON Sur
3L	8742015	3L_8742015_SNP [dm3] 3L_8748915_SNP [dm6]	T	A	8.862e^-5	0.725	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	7596552	3L_7596552_SNP [dm3] 3L_7603452_SNP [dm6]	A	G	8.909e^-5	0.725	NON_SYNONYMOUS_CODING CG33275
3R	10315418	3R_10315418_INS [dm3] 3R_14489696_INS [dm6]	GA	ATC	8.912e^-5	0.725	INTERGENIC
2R	9739276	2R_9739276_SNP [dm3] 2R_13851771_SNP [dm6]	A	G	8.918e^-5	0.725	SYNONYMOUS_CODING CG30485
2L	9627630	2L_9627630_INS [dm3] 2L_9627630_INS [dm6]	T	TCAGCTT	8.948e^-5	0.725	INTERGENIC
2L	6766892	2L_6766892_SNP [dm3] 2L_6766892_SNP [dm6]	T	G	8.983e^-5	0.725	SYNONYMOUS_CODING CG11321 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad
X	1685983	X_1685983_SNP [dm3] X_1791950_SNP [dm6]	T	C	8.984e^-5	0.725	INTRON CG42666	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3022691	2R_3022691_INS [dm3] 2R_7135186_INS [dm6]	A	ACTACAGTGCTTAGAATTTA...	9.051e^-5	0.725	DOWNSTREAM CR44443 INTERGENIC
3R	21235065	3R_21235065_SNP [dm3] 3R_25409343_SNP [dm6]	G	A	9.118e^-5	0.725	INTRON Fur1
3L	14141828	3L_14141828_SNP [dm3] 3L_14148728_SNP [dm6]	G	T	9.142e^-5	0.725	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	8381161	2L_8381161_SNP [dm3] 2L_8381161_SNP [dm6]	G	A	9.157e^-5	0.725	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG13392	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	20295648	2L_20295648_SNP [dm3] 2L_20295648_SNP [dm6]	G	T	9.162e^-5	0.725	UTR_3_PRIME CG12617 DOWNSTREAM CG12617 & 1 other
2L	8378719	2L_8378719_SNP [dm3] 2L_8378719_SNP [dm6]	A	G	9.287e^-5	0.731	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8742024	3L_8742024_SNP [dm3] 3L_8748924_SNP [dm6]	T	A	9.431e^-5	0.731	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	12037519	3R_12037519_SNP [dm3] 3R_16211797_SNP [dm6]	A	C	9.503e^-5	0.731	INTERGENIC
3R	19829110	3R_19829110_SNP [dm3] 3R_24003388_SNP [dm6]	A	C	9.533e^-5	0.731	INTRON KrT95D
2L	3509127	2L_3509127_SNP [dm3] 2L_3509127_SNP [dm6]	A	G	9.547e^-5	0.731	UTR_3_PRIME CG31954 DOWNSTREAM CR45299 EXON CR45300
2R	15959651	2R_15959651_SNP [dm3] 2R_20072146_SNP [dm6]	C	T	9.553e^-5	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12215757	X_12215757_SNP [dm3] X_12321724_SNP [dm6]	A	C	9.570e^-5	0.731	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14016672	3L_14016672_SNP [dm3] 3L_14023572_SNP [dm6]	A	T	9.607e^-5	0.731	INTRON ptip	TF binding site mE1_TFBS_chinmo
2L	6795616	2L_6795616_SNP [dm3] 2L_6795616_SNP [dm6]	A	T	9.653e^-5	0.731	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	13452664	2R_13452664_SNP [dm3] 2R_17565159_SNP [dm6]	T	A	9.698e^-5	0.731	SPLICE_SITE_REGION CG14480 DOWNSTREAM CG43324 & 1 other INTRON CG14480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	6058096	3L_6058096_SNP [dm3] 3L_6064996_SNP [dm6]	A	G	9.744e^-5	0.731	INTERGENIC
2L	9253346	2L_9253346_SNP [dm3] 2L_9253346_SNP [dm6]	T	C	9.826e^-5	0.731	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	12376242	3R_12376242_SNP [dm3] 3R_16550520_SNP [dm6]	C	T	9.827e^-5	0.731	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	11187761	X_11187761_SNP [dm3] X_11293728_SNP [dm6]	T	C	9.849e^-5	0.731	UPSTREAM CG44422 INTRON CG44422
2L	9352680	2L_9352680_SNP [dm3] 2L_9352680_SNP [dm6]	T	C	9.858e^-5	0.731	INTERGENIC
3L	3077744	3L_3077744_SNP [dm3] 3L_3077744_SNP [dm6]	A	T	9.959e^-5	0.731	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9739105	2R_9739105_SNP [dm3] 2R_13851600_SNP [dm6]	G	A	1.002e^-4	0.731	SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2L	7041261	2L_7041261_SNP [dm3] 2L_7041261_SNP [dm6]	T	A	1.004e^-4	0.731	INTRON milt
2L	18575014	2L_18575014_SNP [dm3] 2L_18575014_SNP [dm6]	C	T	1.007e^-4	0.731	INTRON Pde11
2R	14606959	2R_14606959_SNP [dm3] 2R_18719454_SNP [dm6]	C	A	1.008e^-4	0.731	UPSTREAM mir-4982 INTRON Hs3st-A
2L	10238744	2L_10238744_SNP [dm3] 2L_10238744_SNP [dm6]	A	T	1.010e^-4	0.731	UPSTREAM mthl15 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14813646	3L_14813646_SNP [dm3] 3L_14820546_SNP [dm6]	G	A	1.011e^-4	0.731	INTRON CG17839
3L	8744236	3L_8744236_SNP [dm3] 3L_8751136_SNP [dm6]	G	T	1.014e^-4	0.731	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3020102	2R_3020102_SNP [dm3] 2R_7132597_SNP [dm6]	T	G	1.020e^-4	0.733	UPSTREAM Cyp9b2 INTERGENIC
2R	12359805	2R_12359805_SNP [dm3] 2R_16472300_SNP [dm6]	A	G	1.045e^-4	0.748	INTERGENIC
2R	7317787	2R_7317787_SNP [dm3] 2R_11430282_SNP [dm6]	A	G	1.057e^-4	0.754	UPSTREAM Drip INTERGENIC
2L	4619454	2L_4619454_SNP [dm3] 2L_4619454_SNP [dm6]	G	T	1.080e^-4	0.767	UPSTREAM CR44609 INTERGENIC
2R	7317534	2R_7317534_SNP [dm3] 2R_11430029_SNP [dm6]	A	T	1.097e^-4	0.772	UPSTREAM Drip INTERGENIC
2R	4018920	2R_4018920_SNP [dm3] 2R_8131415_SNP [dm6]	A	T	1.106e^-4	0.772	UPSTREAM Pabp2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1205268	3L_1205268_SNP [dm3] 3L_1205268_SNP [dm6]	A	G	1.112e^-4	0.772	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2L	6450877	2L_6450877_SNP [dm3] 2L_6450877_SNP [dm6]	A	G	1.115e^-4	0.772	SYNONYMOUS_CODING retm	TF binding site mE1_TFBS_cad
3L	6137128	3L_6137128_SNP [dm3] 3L_6144028_SNP [dm6]	C	T	1.117e^-4	0.772	UTR_3_PRIME Lcp65Ad UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad	TF binding site BDTNP1_TFBS_da
2R	13464412	2R_13464412_SNP [dm3] 2R_17576907_SNP [dm6]	G	A	1.118e^-4	0.772	SYNONYMOUS_CODING Dcr-2	TF binding site mE1_TFBS_HSA
3R	21054456	3R_21054456_SNP [dm3] 3R_25228734_SNP [dm6]	G	T	1.120e^-4	0.772	INTRON Cad96Cb
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	1.123e^-4	0.772	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2R	3016798	2R_3016798_SNP [dm3] 2R_7129293_SNP [dm6]	T	C	1.123e^-4	0.772	NON_SYNONYMOUS_CODING Cyp9b1 DOWNSTREAM Cyp9b2
2L	6778042	2L_6778042_SNP [dm3] 2L_6778042_SNP [dm6]	A	T	1.135e^-4	0.772	UTR_3_PRIME CG17378 DOWNSTREAM nrv1 & 1 other
X	13994777	X_13994777_INS [dm3] X_14100744_INS [dm6]	T	TAT	1.137e^-4	0.772	INTERGENIC
2L	17781386	2L_17781386_SNP [dm3] 2L_17781386_SNP [dm6]	A	G	1.151e^-4	0.772	INTERGENIC
X	2487721	X_2487721_SNP [dm3] X_2593688_SNP [dm6]	T	C	1.154e^-4	0.772	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_sens
2L	7366636	2L_7366636_SNP [dm3] 2L_7366636_SNP [dm6]	A	T	1.159e^-4	0.772	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8886630	2R_8886630_SNP [dm3] 2R_12999125_SNP [dm6]	C	G	1.170e^-4	0.772	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9113382	3R_9113382_SNP [dm3] 3R_13287660_SNP [dm6]	T	A	1.172e^-4	0.772	UTR_3_PRIME CG15887
3L	827067	3L_827067_SNP [dm3] 3L_827067_SNP [dm6]	A	T	1.178e^-4	0.772	DOWNSTREAM snoRNA:Me28S-C788b & 3 others INTRON CG13900 & 1 other
2L	1622955	2L_1622955_SNP [dm3] 2L_1622955_SNP [dm6]	T	C	1.179e^-4	0.772	EXON CR44603
2L	9011556	2L_9011556_SNP [dm3] 2L_9011556_SNP [dm6]	T	A	1.186e^-4	0.772	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	6901540	2L_6901540_SNP [dm3] 2L_6901540_SNP [dm6]	G	C	1.190e^-4	0.772	UPSTREAM mir-932 INTRON Nlg2
3L	14814978	3L_14814978_SNP [dm3] 3L_14821878_SNP [dm6]	A	G	1.191e^-4	0.772	INTRON CG17839
2R	15274301	2R_15274301_SNP [dm3] 2R_19386796_SNP [dm6]	G	A	1.193e^-4	0.772	INTRON CG10081
2L	12093853	2L_12093853_SNP [dm3] 2L_12093853_SNP [dm6]	A	C	1.198e^-4	0.772	UTR_5_PRIME Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	10727192	2L_10727192_SNP [dm3] 2L_10727192_SNP [dm6]	G	A	1.198e^-4	0.772	INTRON CG6431	TF binding site mE1_TFBS_cad
2L	6735761	2L_6735761_SNP [dm3] 2L_6735761_SNP [dm6]	C	A	1.211e^-4	0.772	DOWNSTREAM TTLL3A INTRON TTLL3B	TF binding site BDTNP1_TFBS_twi
2L	12201029	2L_12201029_SNP [dm3] 2L_12201029_SNP [dm6]	T	G	1.212e^-4	0.772	UPSTREAM aret INTRON aret
3L	5549230	3L_5549230_SNP [dm3] 3L_5556130_SNP [dm6]	T	C	1.212e^-4	0.772	INTERGENIC
3R	21209995	3R_21209995_SNP [dm3] 3R_25384273_SNP [dm6]	A	G	1.217e^-4	0.772	SYNONYMOUS_CODING CG31437 DOWNSTREAM Fur1 INTRON Fur1
3L	15732985	3L_15732985_SNP [dm3] 3L_15739885_SNP [dm6]	A	C	1.218e^-4	0.772	INTERGENIC
2R	18003168	2R_18003168_SNP [dm3] 2R_22115663_SNP [dm6]	G	T	1.224e^-4	0.772	NON_SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2L	8487557	2L_8487557_SNP [dm3] 2L_8487557_SNP [dm6]	C	T	1.225e^-4	0.772	SYNONYMOUS_CODING d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3986063	2R_3986063_SNP [dm3] 2R_8098558_SNP [dm6]	A	G	1.228e^-4	0.772	UPSTREAM CG11210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	12267098	2R_12267098_SNP [dm3] 2R_16379593_SNP [dm6]	T	A	1.245e^-4	0.772	UPSTREAM CG43187 EXON CR45316 & 1 other
3R	17806912	3R_17806912_SNP [dm3] 3R_21981190_SNP [dm6]	T	C	1.251e^-4	0.772	INTRON Eip93F
2L	1678458	2L_1678458_SNP [dm3] 2L_1678458_SNP [dm6]	A	C	1.252e^-4	0.772	INTRON chinmo
X	3435460	X_3435460_SNP [dm3] X_3541427_SNP [dm6]	A	G	1.253e^-4	0.772	INTRON CG32791
3L	11177725	3L_11177725_SNP [dm3] 3L_11184625_SNP [dm6]	C	A	1.258e^-4	0.772	INTRON GlcAT-P
2L	6778157	2L_6778157_SNP [dm3] 2L_6778157_SNP [dm6]	T	A	1.265e^-4	0.772	UTR_3_PRIME CG17378 DOWNSTREAM nrv1 & 1 other
3R	1805259	3R_1805259_SNP [dm3] 3R_5979537_SNP [dm6]	T	C	1.267e^-4	0.772	INTERGENIC
3R	23452230	3R_23452230_DEL [dm3] 3R_27626508_DEL [dm6]	AA	A	1.273e^-4	0.772	UPSTREAM CG5612 INTRON Tusp
2L	13116158	2L_13116158_SNP [dm3] 2L_13116158_SNP [dm6]	G	A	1.275e^-4	0.772	INTERGENIC
3R	26590738	3R_26590738_SNP [dm3] 3R_30765016_SNP [dm6]	C	T	1.277e^-4	0.772	UPSTREAM zfh1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7317368	2L_7317368_SNP [dm3] 2L_7317368_SNP [dm6]	A	C	1.284e^-4	0.772	INTERGENIC
X	14540448	X_14540448_SNP [dm3] X_14646415_SNP [dm6]	G	A	1.294e^-4	0.772	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14814974	3L_14814974_SNP [dm3] 3L_14821874_SNP [dm6]	A	G	1.295e^-4	0.772	INTRON CG17839
2L	6735797	2L_6735797_SNP [dm3] 2L_6735797_SNP [dm6]	G	C	1.297e^-4	0.772	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A
3L	7481184	3L_7481184_SNP [dm3] 3L_7488084_SNP [dm6]	A	T	1.308e^-4	0.772	DOWNSTREAM mthl6 INTERGENIC
X	13298436	X_13298436_SNP [dm3] X_13404403_SNP [dm6]	G	A	1.312e^-4	0.772	UPSTREAM GstT4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12093071	2L_12093071_SNP [dm3] 2L_12093071_SNP [dm6]	A	G	1.320e^-4	0.772	UPSTREAM CR44594 & 1 other INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19128023	3R_19128023_SNP [dm3] 3R_23302301_SNP [dm6]	T	C	1.322e^-4	0.772	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8384672	2L_8384672_SNP [dm3] 2L_8384672_SNP [dm6]	G	A	1.323e^-4	0.772	UTR_5_PRIME CG13384 UPSTREAM l_2_k12914 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	23386776	3R_23386776_SNP [dm3] 3R_27561054_SNP [dm6]	G	A	1.336e^-4	0.772	UPSTREAM snmRNA:157 DOWNSTREAM wdb INTRON CG5646
2R	1212228	2R_1212228_SNP [dm3] 2R_5324723_SNP [dm6]	C	G	1.337e^-4	0.772	INTRON sxc	transposable element FlyBase
3R	19824676	3R_19824676_SNP [dm3] 3R_23998954_SNP [dm6]	G	A	1.337e^-4	0.772	SPLICE_SITE_REGION KrT95D INTRON KrT95D	TF binding site mE1_TFBS_cad
2L	4656890	2L_4656890_SNP [dm3] 2L_4656890_SNP [dm6]	C	A	1.339e^-4	0.772	INTERGENIC
2R	3026384	2R_3026384_SNP [dm3] 2R_7138879_SNP [dm6]	G	T	1.340e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad
X	14540599	X_14540599_SNP [dm3] X_14646566_SNP [dm6]	C	T	1.341e^-4	0.772	INTRON NetA	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5015246	X_5015246_SNP [dm3] X_5121213_SNP [dm6]	A	T	1.343e^-4	0.772	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	12006812	3R_12006812_SNP [dm3] 3R_16181090_SNP [dm6]	C	A	1.347e^-4	0.772	UTR_5_PRIME CG8927 DOWNSTREAM CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18357870	3L_18357870_SNP [dm3] 3L_18364770_SNP [dm6]	A	G	1.352e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3803143	2L_3803143_SNP [dm3] 2L_3803143_SNP [dm6]	A	G	1.356e^-4	0.772	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	2063154	2L_2063154_SNP [dm3] 2L_2063154_SNP [dm6]	A	G	1.356e^-4	0.772	INTRON dpr3
X	6454529	X_6454529_SNP [dm3] X_6560496_SNP [dm6]	C	A	1.357e^-4	0.772	SYNONYMOUS_CODING CG34417
3R	19131131	3R_19131131_SNP [dm3] 3R_23305409_SNP [dm6]	A	G	1.358e^-4	0.772	INTRON pnt
3L	18377365	3L_18377365_SNP [dm3] 3L_18384265_SNP [dm6]	T	C	1.367e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17585769	2L_17585769_SNP [dm3] 2L_17585769_SNP [dm6]	A	T	1.371e^-4	0.772	UPSTREAM CR45112 INTERGENIC
2L	6711235	2L_6711235_SNP [dm3] 2L_6711235_SNP [dm6]	A	C	1.372e^-4	0.772	DOWNSTREAM AkhR INTERGENIC
3R	16173988	3R_16173988_INS [dm3] 3R_20348266_INS [dm6]	A	ACA	1.374e^-4	0.772	INTERGENIC
3R	9355080	3R_9355080_SNP [dm3] 3R_13529358_SNP [dm6]	C	G	1.375e^-4	0.772	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19301343	2R_19301343_SNP [dm3] 2R_23413820_SNP [dm6]	T	G	1.375e^-4	0.772	INTRON CG9812
3L	8741938	3L_8741938_SNP [dm3] 3L_8748838_SNP [dm6]	G	A	1.383e^-4	0.772	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	20627890	3R_20627890_SNP [dm3] 3R_24802168_SNP [dm6]	A	G	1.397e^-4	0.772	SYNONYMOUS_CODING polybromo	TF binding site mE1_TFBS_sens
3R	23386960	3R_23386960_SNP [dm3] 3R_27561238_SNP [dm6]	G	A	1.397e^-4	0.772	START_GAINED CG5646 UTR_5_PRIME CG5646 UPSTREAM snmRNA:157 DOWNSTREAM wdb
2L	9011444	2L_9011444_SNP [dm3] 2L_9011444_SNP [dm6]	T	A	1.400e^-4	0.772	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	10703341	2L_10703341_SNP [dm3] 2L_10703341_SNP [dm6]	C	G	1.401e^-4	0.772	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14021274	3L_14021274_SNP [dm3] 3L_14028174_SNP [dm6]	T	A	1.416e^-4	0.772	NON_SYNONYMOUS_CODING ptip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	11627817	3L_11627817_SNP [dm3] 3L_11634717_SNP [dm6]	A	T	1.416e^-4	0.772	UTR_5_PRIME CG32091
3L	14813812	3L_14813812_SNP [dm3] 3L_14820712_SNP [dm6]	C	A	1.418e^-4	0.772	INTRON CG17839
2L	13118692	2L_13118692_SNP [dm3] 2L_13118692_SNP [dm6]	C	A	1.422e^-4	0.772	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	1876830	2L_1876830_SNP [dm3] 2L_1876830_SNP [dm6]	A	T	1.428e^-4	0.772	INTRON CG31663
2L	13339870	2L_13339870_SNP [dm3] 2L_13339870_SNP [dm6]	G	T	1.432e^-4	0.772	INTERGENIC
3L	12199298	3L_12199298_SNP [dm3] 3L_12206198_SNP [dm6]	T	A	1.433e^-4	0.772	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3365610	3L_3365610_SNP [dm3] 3L_3365610_SNP [dm6]	C	T	1.434e^-4	0.772	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	4018964	2R_4018964_SNP [dm3] 2R_8131459_SNP [dm6]	A	T	1.440e^-4	0.772	UTR_5_PRIME Pabp2 UPSTREAM Pbp49 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4925620	2L_4925620_SNP [dm3] 2L_4925620_SNP [dm6]	C	T	1.444e^-4	0.772	INTRON hoe1
3L	12342752	3L_12342752_DEL [dm3] 3L_12349652_DEL [dm6]	TC	T	1.446e^-4	0.772	INTRON CrzR
2L	8539867	2L_8539867_SNP [dm3] 2L_8539867_SNP [dm6]	G	A	1.449e^-4	0.772	INTRON CG17834
2L	6798659	2L_6798659_SNP [dm3] 2L_6798659_SNP [dm6]	C	A	1.451e^-4	0.772	UPSTREAM nrv2 & 1 other INTRON nrv2	regulatory region REDfly_CRMs
3R	17806776	3R_17806776_SNP [dm3] 3R_21981054_SNP [dm6]	G	T	1.460e^-4	0.772	INTRON Eip93F
3L	14024389	3L_14024389_INS [dm3] 3L_14031289_INS [dm6]	A	AA	1.462e^-4	0.772	UPSTREAM CG6650 INTRON endos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2166168	3L_2166168_SNP [dm3] 3L_2166168_SNP [dm6]	A	C	1.466e^-4	0.772	INTERGENIC
3L	7596807	3L_7596807_SNP [dm3] 3L_7603707_SNP [dm6]	C	T	1.471e^-4	0.772	SYNONYMOUS_CODING CG33275
3R	19836085	3R_19836085_DEL [dm3] 3R_24010363_DEL [dm6]	TTGTTAAACAAT...	T	1.471e^-4	0.772	INTRON KrT95D
2L	6231144	2L_6231144_SNP [dm3] 2L_6231144_SNP [dm6]	C	T	1.474e^-4	0.772	UPSTREAM CR44823 INTERGENIC
3R	23386962	3R_23386962_SNP [dm3] 3R_27561240_SNP [dm6]	A	G	1.479e^-4	0.772	UTR_5_PRIME CG5646 UPSTREAM snmRNA:157 DOWNSTREAM wdb
3L	15425478	3L_15425478_SNP [dm3] 3L_15432378_SNP [dm6]	G	A	1.482e^-4	0.772	INTERGENIC
2L	19457652	2L_19457652_DEL [dm3] 2L_19457652_DEL [dm6]	GTTAAGTAATGATACCAG...	G	1.491e^-4	0.773	UTR_3_PRIME CG10026	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8214435	3L_8214435_SNP [dm3] 3L_8221335_SNP [dm6]	G	A	1.493e^-4	0.773	UPSTREAM CG13678 INTERGENIC
X	5510543	X_5510543_SNP [dm3] X_5616510_SNP [dm6]	A	G	1.497e^-4	0.774	UPSTREAM CG34434 DOWNSTREAM RhoGAP5A INTERGENIC
3L	7596742	3L_7596742_INS [dm3] 3L_7603642_INS [dm6]	T	TTGGAACCA	1.503e^-4	0.774	INTRON CG33275
X	5369362	X_5369362_SNP [dm3] X_5475329_SNP [dm6]	G	A	1.513e^-4	0.778	INTRON SPR
3R	18392218	3R_18392218_SNP [dm3] 3R_22566496_SNP [dm6]	T	A	1.524e^-4	0.781	INTERGENIC
X	5015454	X_5015454_SNP [dm3] X_5121421_SNP [dm6]	C	G	1.536e^-4	0.781	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	1.537e^-4	0.781	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	1.537e^-4	0.781	UPSTREAM hoe1 INTRON hoe1
3R	23474772	3R_23474772_SNP [dm3] 3R_27649050_SNP [dm6]	C	T	1.545e^-4	0.782	SYNONYMOUS_CODING tau INTRON tau
3R	23518205	3R_23518205_SNP [dm3] 3R_27692483_SNP [dm6]	G	A	1.546e^-4	0.782	UTR_3_PRIME CG12880
2R	18746201	2R_18746201_SNP [dm3] 2R_22858678_SNP [dm6]	T	A	1.550e^-4	0.782	UTR_5_PRIME inaD
3R	20823951	3R_20823951_SNP [dm3] 3R_24998229_SNP [dm6]	C	G	1.556e^-4	0.783	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14814972	3L_14814972_SNP [dm3] 3L_14821872_SNP [dm6]	A	T	1.564e^-4	0.784	INTRON CG17839
2L	8392399	2L_8392399_SNP [dm3] 2L_8392399_SNP [dm6]	G	A	1.580e^-4	0.789	UPSTREAM CG42820 DOWNSTREAM Acp29AB INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	10550093	3R_10550093_SNP [dm3] 3R_14724371_SNP [dm6]	T	C	1.593e^-4	0.789	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	8511154	2R_8511154_SNP [dm3] 2R_12623649_SNP [dm6]	T	G	1.597e^-4	0.789	UPSTREAM CG30054 DOWNSTREAM Galphaq INTERGENIC
3R	19836103	3R_19836103_SNP [dm3] 3R_24010381_SNP [dm6]	C	A	1.598e^-4	0.789	INTRON KrT95D
3L	7482161	3L_7482161_SNP [dm3] 3L_7489061_SNP [dm6]	G	A	1.601e^-4	0.789	INTERGENIC
4	468308	4_468308_SNP [dm3] 4_447682_SNP [dm6]	C	A	1.602e^-4	0.789	INTRON CaMKI
2L	8376961	2L_8376961_SNP [dm3] 2L_8376961_SNP [dm6]	A	G	1.609e^-4	0.789	UPSTREAM CG17294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3077310	3L_3077310_SNP [dm3] 3L_3077310_SNP [dm6]	A	G	1.614e^-4	0.789	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9334244	2R_9334244_SNP [dm3] 2R_13446739_SNP [dm6]	A	T	1.614e^-4	0.789	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6649052	3L_6649052_SNP [dm3] 3L_6655952_SNP [dm6]	C	A	1.615e^-4	0.789	INTERGENIC
2L	8529430	2L_8529430_SNP [dm3] 2L_8529430_SNP [dm6]	T	A	1.625e^-4	0.789	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	9903980	3L_9903980_INS [dm3] 3L_9910880_INS [dm6]	A	ATAT	1.631e^-4	0.789	INTRON CG34356
2L	6552818	2L_6552818_SNP [dm3] 2L_6552818_SNP [dm6]	C	A	1.635e^-4	0.789	DOWNSTREAM CR44776 INTERGENIC
2R	12105168	2R_12105168_DEL [dm3] 2R_16217663_DEL [dm6]	AA	A	1.638e^-4	0.789	INTRON mrj	TF binding site BDTNP1_TFBS_da
3L	3077715	3L_3077715_SNP [dm3] 3L_3077715_SNP [dm6]	C	G	1.640e^-4	0.789	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11891392	3L_11891392_SNP [dm3] 3L_11898292_SNP [dm6]	A	G	1.652e^-4	0.789	UPSTREAM CR43624 INTRON CG44837
2L	4656662	2L_4656662_SNP [dm3] 2L_4656662_SNP [dm6]	G	C	1.654e^-4	0.789	INTERGENIC
3L	3366478	3L_3366478_SNP [dm3] 3L_3366478_SNP [dm6]	G	A	1.658e^-4	0.789	SYNONYMOUS_CODING kst INTRON kst	TF binding site mE1_TFBS_cad
3L	14138937	3L_14138937_SNP [dm3] 3L_14145837_SNP [dm6]	C	T	1.659e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	3285333	3R_3285333_SNP [dm3] 3R_7459611_SNP [dm6]	C	T	1.673e^-4	0.789	INTERGENIC
2L	3214457	2L_3214457_SNP [dm3] 2L_3214457_SNP [dm6]	A	C	1.678e^-4	0.789	INTERGENIC
2R	7442284	2R_7442284_SNP [dm3] 2R_11554779_SNP [dm6]	G	A	1.684e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	15848013	X_15848013_SNP [dm3] X_15953980_SNP [dm6]	G	A	1.694e^-4	0.789	INTRON mmd
2L	12480961	2L_12480961_SNP [dm3] 2L_12480961_SNP [dm6]	A	G	1.698e^-4	0.789	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	9011501	2L_9011501_SNP [dm3] 2L_9011501_SNP [dm6]	C	T	1.700e^-4	0.789	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3R	17627509	3R_17627509_SNP [dm3] 3R_21801787_SNP [dm6]	G	T	1.710e^-4	0.789	INTRON CASK
3L	15733077	3L_15733077_MNP [dm3] 3L_15739977_MNP [dm6]	GTC	AAA	1.711e^-4	0.789	INTERGENIC
2L	12789884	2L_12789884_SNP [dm3] 2L_12789884_SNP [dm6]	G	T	1.712e^-4	0.789	INTERGENIC
3L	6618620	3L_6618620_SNP [dm3] 3L_6625520_SNP [dm6]	C	A	1.712e^-4	0.789	INTRON GluRIA
3L	14016664	3L_14016664_SNP [dm3] 3L_14023564_SNP [dm6]	T	A	1.717e^-4	0.789	INTRON ptip	TF binding site mE1_TFBS_chinmo
3R	3269658	3R_3269658_SNP [dm3] 3R_7443936_SNP [dm6]	T	A	1.718e^-4	0.789	INTERGENIC
3R	9355068	3R_9355068_SNP [dm3] 3R_13529346_SNP [dm6]	G	A	1.718e^-4	0.789	UTR_5_PRIME CG42778	TF binding site mE1_TFBS_HSA
2L	6134415	2L_6134415_SNP [dm3] 2L_6134415_SNP [dm6]	G	A	1.724e^-4	0.789	UPSTREAM CR45719 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8895935	2R_8895935_SNP [dm3] 2R_13008430_SNP [dm6]	C	A	1.727e^-4	0.789	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3801664	3R_3801664_SNP [dm3] 3R_7975942_SNP [dm6]	T	C	1.731e^-4	0.789	NON_SYNONYMOUS_CODING CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3366157	3L_3366157_SNP [dm3] 3L_3366157_SNP [dm6]	G	A	1.733e^-4	0.789	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11333430	2R_11333430_SNP [dm3] 2R_15445925_SNP [dm6]	A	T	1.733e^-4	0.789	INTRON CG43729
2L	15749166	2L_15749166_SNP [dm3] 2L_15749166_SNP [dm6]	A	T	1.736e^-4	0.789	DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	1.739e^-4	0.789	DOWNSTREAM ppk26 INTERGENIC
3R	14495614	3R_14495614_SNP [dm3] 3R_18669892_SNP [dm6]	T	A	1.759e^-4	0.789	UPSTREAM CR45028 DOWNSTREAM CG31229 INTRON CG7702	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	23522164	3R_23522164_SNP [dm3] 3R_27696442_SNP [dm6]	C	T	1.760e^-4	0.789	SYNONYMOUS_CODING CG43320 DOWNSTREAM ALiX
2L	10703233	2L_10703233_SNP [dm3] 2L_10703233_SNP [dm6]	C	T	1.771e^-4	0.789	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2L	16578069	2L_16578069_SNP [dm3] 2L_16578069_SNP [dm6]	G	C	1.794e^-4	0.789	INTRON CG42389
2R	9631826	2R_9631826_SNP [dm3] 2R_13744321_SNP [dm6]	G	T	1.798e^-4	0.789	INTRON fas
3L	7221805	3L_7221805_SNP [dm3] 3L_7228705_SNP [dm6]	A	G	1.803e^-4	0.789	INTERGENIC
2L	9011448	2L_9011448_SNP [dm3] 2L_9011448_SNP [dm6]	G	C	1.803e^-4	0.789	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	11941985	3L_11941985_SNP [dm3] 3L_11948885_SNP [dm6]	C	T	1.812e^-4	0.789	SYNONYMOUS_CODING CG7252 UPSTREAM CG17826	TF binding site mE1_TFBS_cad
2R	18360848	2R_18360848_SNP [dm3] 2R_22473343_SNP [dm6]	A	T	1.815e^-4	0.789	UTR_3_PRIME CG45062 DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad
3L	15733104	3L_15733104_SNP [dm3] 3L_15740004_SNP [dm6]	G	T	1.817e^-4	0.789	INTERGENIC
3L	7070099	3L_7070099_SNP [dm3] 3L_7076999_SNP [dm6]	T	C	1.821e^-4	0.789	INTRON CG8641
3R	3266764	3R_3266764_SNP [dm3] 3R_7441042_SNP [dm6]	C	T	1.822e^-4	0.789	NON_SYNONYMOUS_CODING CG14598
3L	14016679	3L_14016679_SNP [dm3] 3L_14023579_SNP [dm6]	T	A	1.822e^-4	0.789	INTRON ptip	TF binding site mE1_TFBS_chinmo
X	20230685	X_20230685_SNP [dm3] X_20359658_SNP [dm6]	C	G	1.837e^-4	0.789	INTERGENIC
3L	14139025	3L_14139025_SNP [dm3] 3L_14145925_SNP [dm6]	C	A	1.838e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	12496772	3L_12496772_SNP [dm3] 3L_12503672_SNP [dm6]	T	A	1.842e^-4	0.789	SYNONYMOUS_CODING CG10646 UPSTREAM vih	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	467711	3L_467711_SNP [dm3] 3L_467711_SNP [dm6]	T	C	1.851e^-4	0.789	INTRON klar
2R	18360943	2R_18360943_SNP [dm3] 2R_22473438_SNP [dm6]	T	C	1.861e^-4	0.789	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG10384	TF binding site mE1_TFBS_cad
3R	24466671	3R_24466671_SNP [dm3] 3R_28640949_SNP [dm6]	G	A	1.868e^-4	0.789	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2R	4997838	2R_4997838_SNP [dm3] 2R_9110333_SNP [dm6]	G	A	1.871e^-4	0.789	UPSTREAM Pmm45A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	14540512	X_14540512_SNP [dm3] X_14646479_SNP [dm6]	T	C	1.873e^-4	0.789	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18392800	3R_18392800_SNP [dm3] 3R_22567078_SNP [dm6]	A	C	1.877e^-4	0.789	INTERGENIC
2R	19195537	2R_19195537_SNP [dm3] 2R_23308014_SNP [dm6]	G	T	1.885e^-4	0.789	DOWNSTREAM Prosbeta5R1 INTERGENIC
2R	13454751	2R_13454751_SNP [dm3] 2R_17567246_SNP [dm6]	G	A	1.891e^-4	0.789	SYNONYMOUS_CODING Ns2
X	16430574	X_16430574_SNP [dm3] X_16536541_SNP [dm6]	A	T	1.893e^-4	0.789	INTERGENIC
2L	1645222	2L_1645222_SNP [dm3] 2L_1645222_SNP [dm6]	T	A	1.901e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5451775	X_5451775_INS [dm3] X_5557742_INS [dm6]	T	TCGCAGGGTATC...	1.908e^-4	0.789	INTRON Vsx2
2R	9631828	2R_9631828_SNP [dm3] 2R_13744323_SNP [dm6]	G	A	1.910e^-4	0.789	INTRON fas
2R	6208341	2R_6208341_SNP [dm3] 2R_10320836_SNP [dm6]	C	A	1.910e^-4	0.789	UPSTREAM CG34222 INTRON Ndg
2L	7235764	2L_7235764_SNP [dm3] 2L_7235764_SNP [dm6]	A	G	1.911e^-4	0.789	INTRON Ndae1	TF binding site mE1_TFBS_cad
3L	6892903	3L_6892903_SNP [dm3] 3L_6899803_SNP [dm6]	G	A	1.916e^-4	0.789	INTERGENIC
2L	9598331	2L_9598331_SNP [dm3] 2L_9598331_SNP [dm6]	A	C	1.922e^-4	0.789	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	3366375	3L_3366375_SNP [dm3] 3L_3366375_SNP [dm6]	G	A	1.924e^-4	0.789	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6450859	2L_6450859_SNP [dm3] 2L_6450859_SNP [dm6]	A	G	1.926e^-4	0.789	SYNONYMOUS_CODING retm	TF binding site mE1_TFBS_cad
3R	19836044	3R_19836044_SNP [dm3] 3R_24010322_SNP [dm6]	T	A	1.933e^-4	0.789	INTRON KrT95D
2L	4277037	2L_4277037_SNP [dm3] 2L_4277037_SNP [dm6]	T	A	1.938e^-4	0.789	DOWNSTREAM Art2 INTERGENIC
2L	9011394	2L_9011394_SNP [dm3] 2L_9011394_SNP [dm6]	T	C	1.941e^-4	0.789	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	3366145	3L_3366145_SNP [dm3] 3L_3366145_SNP [dm6]	A	T	1.942e^-4	0.789	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6770115	2L_6770115_SNP [dm3] 2L_6770115_SNP [dm6]	A	C	1.943e^-4	0.789	INTRON CG11321	TF binding site mE1_TFBS_chinmo
3L	13669407	3L_13669407_SNP [dm3] 3L_13676307_SNP [dm6]	T	A	1.950e^-4	0.789	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	5272576	X_5272576_SNP [dm3] X_5378543_SNP [dm6]	G	T	1.952e^-4	0.789	INTRON SK
X	16430791	X_16430791_SNP [dm3] X_16536758_SNP [dm6]	T	C	1.959e^-4	0.789	INTERGENIC
3R	12209847	3R_12209847_SNP [dm3] 3R_16384125_SNP [dm6]	G	T	1.962e^-4	0.789	INTRON ss	regulatory region REDfly_CRMs
2L	1497286	2L_1497286_SNP [dm3] 2L_1497286_SNP [dm6]	T	C	1.966e^-4	0.789	SYNONYMOUS_CODING CG31661 DOWNSTREAM CG31926	TF binding site mE1_TFBS_HSA
2L	7112032	2L_7112032_SNP [dm3] 2L_7112032_SNP [dm6]	C	T	1.968e^-4	0.789	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	11937919	X_11937919_DEL [dm3] X_12043886_DEL [dm6]	TGGTGGTGAAAATGTATGCA...	T	1.969e^-4	0.789	UTR_5_PRIME Ten-a EXON CR43960
3R	23152012	3R_23152012_SNP [dm3] 3R_27326290_SNP [dm6]	C	G	1.970e^-4	0.789	INTERGENIC
3L	16317714	3L_16317714_SNP [dm3] 3L_16324614_SNP [dm6]	G	A	1.972e^-4	0.789	DOWNSTREAM CG13040 & 1 other INTERGENIC
3L	1205404	3L_1205404_SNP [dm3] 3L_1205404_SNP [dm6]	G	T	1.973e^-4	0.789	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7320730	2R_7320730_SNP [dm3] 2R_11433225_SNP [dm6]	G	A	1.974e^-4	0.789	EXON CR43771
3L	12343195	3L_12343195_SNP [dm3] 3L_12350095_SNP [dm6]	G	C	1.976e^-4	0.789	INTRON CrzR
3R	21900695	3R_21900695_SNP [dm3] 3R_26074973_SNP [dm6]	C	G	1.979e^-4	0.789	INTERGENIC
2L	5272699	2L_5272699_SNP [dm3] 2L_5272699_SNP [dm6]	A	G	1.979e^-4	0.789	SYNONYMOUS_CODING Bsg25D
3R	8061619	3R_8061619_SNP [dm3] 3R_12235897_SNP [dm6]	C	T	1.984e^-4	0.789	INTRON Cyp313a2
2L	6778051	2L_6778051_SNP [dm3] 2L_6778051_SNP [dm6]	T	C	1.987e^-4	0.789	UTR_3_PRIME CG17378 DOWNSTREAM nrv1 & 1 other
2R	3428581	2R_3428581_SNP [dm3] 2R_7541076_SNP [dm6]	T	A	1.991e^-4	0.789	INTRON Corin
X	20230717	X_20230717_SNP [dm3] X_20359690_SNP [dm6]	T	A	1.998e^-4	0.789	INTERGENIC
2L	15648685	2L_15648685_SNP [dm3] 2L_15648685_SNP [dm6]	C	T	2.000e^-4	0.789	SYNONYMOUS_CODING CG4587
3L	12357324	3L_12357324_SNP [dm3] 3L_12364224_SNP [dm6]	G	A	2.002e^-4	0.789	INTERGENIC
3L	15732866	3L_15732866_SNP [dm3] 3L_15739766_SNP [dm6]	A	G	2.005e^-4	0.789	INTERGENIC
2R	4024438	2R_4024438_SNP [dm3] 2R_8136933_SNP [dm6]	G	C	2.005e^-4	0.789	DOWNSTREAM Lpin INTERGENIC
3L	14016633	3L_14016633_SNP [dm3] 3L_14023533_SNP [dm6]	A	T	2.016e^-4	0.789	INTRON ptip	TF binding site mE1_TFBS_chinmo
2L	8529408	2L_8529408_SNP [dm3] 2L_8529408_SNP [dm6]	G	A	2.016e^-4	0.789	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2L	6137580	2L_6137580_SNP [dm3] 2L_6137580_SNP [dm6]	A	C	2.016e^-4	0.789	INTERGENIC
X	15848007	X_15848007_SNP [dm3] X_15953974_SNP [dm6]	A	T	2.020e^-4	0.789	INTRON mmd
2L	8529328	2L_8529328_SNP [dm3] 2L_8529328_SNP [dm6]	G	A	2.023e^-4	0.789	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
3R	19897850	3R_19897850_SNP [dm3] 3R_24072128_SNP [dm6]	A	G	2.029e^-4	0.789	INTRON 4EHP
2R	4023322	2R_4023322_SNP [dm3] 2R_8135817_SNP [dm6]	A	T	2.043e^-4	0.789	UPSTREAM Obp44a INTERGENIC
2R	13454754	2R_13454754_SNP [dm3] 2R_17567249_SNP [dm6]	G	A	2.045e^-4	0.789	SYNONYMOUS_CODING Ns2
3L	13994721	3L_13994721_SNP [dm3] 3L_14001621_SNP [dm6]	T	C	2.050e^-4	0.789	SYNONYMOUS_CODING CG8783 UPSTREAM upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	5977462	3R_5977462_SNP [dm3] 3R_10151740_SNP [dm6]	G	A	2.051e^-4	0.789	UPSTREAM CG34303 INTRON Invadolysin
2L	6795540	2L_6795540_SNP [dm3] 2L_6795540_SNP [dm6]	A	G	2.059e^-4	0.789	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	9352581	2L_9352581_SNP [dm3] 2L_9352581_SNP [dm6]	A	G	2.066e^-4	0.789	INTERGENIC
3L	12489842	3L_12489842_SNP [dm3] 3L_12496742_SNP [dm6]	C	T	2.066e^-4	0.789	INTRON CG10657
3L	7997066	3L_7997066_DEL [dm3] 3L_8003966_DEL [dm6]	CAC	C	2.071e^-4	0.789	INTRON nmo
2R	4027292	2R_4027292_SNP [dm3] 2R_8139787_SNP [dm6]	G	A	2.078e^-4	0.789	SYNONYMOUS_CODING Lpin
X	3520611	X_3520611_SNP [dm3] X_3626578_SNP [dm6]	C	T	2.080e^-4	0.789	INTRON AstA-R1
2L	12348580	2L_12348580_SNP [dm3] 2L_12348580_SNP [dm6]	T	C	2.083e^-4	0.789	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3R	12037542	3R_12037542_SNP [dm3] 3R_16211820_SNP [dm6]	C	T	2.085e^-4	0.789	INTERGENIC
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	2.088e^-4	0.789	INTRON CG17839
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	2.088e^-4	0.789	INTRON CG17839
3L	8755347	3L_8755347_SNP [dm3] 3L_8762247_SNP [dm6]	G	A	2.089e^-4	0.789	SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6231170	2L_6231170_SNP [dm3] 2L_6231170_SNP [dm6]	A	T	2.104e^-4	0.789	UPSTREAM CR44823 INTERGENIC
2L	10676681	2L_10676681_DEL [dm3] 2L_10676681_DEL [dm6]	TAATCAAT	T	2.114e^-4	0.789	UPSTREAM CG17104 INTERGENIC
3R	21235000	3R_21235000_SNP [dm3] 3R_25409278_SNP [dm6]	C	T	2.118e^-4	0.789	INTRON Fur1
2R	18459170	2R_18459170_SNP [dm3] 2R_22571665_SNP [dm6]	T	C	2.122e^-4	0.789	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3435416	X_3435416_SNP [dm3] X_3541383_SNP [dm6]	A	G	2.124e^-4	0.789	INTRON CG32791
2L	10624918	2L_10624918_SNP [dm3] 2L_10624918_SNP [dm6]	T	C	2.125e^-4	0.789	INTRON Trim9
2L	4658252	2L_4658252_SNP [dm3] 2L_4658252_SNP [dm6]	C	G	2.132e^-4	0.789	INTERGENIC
3R	8085132	3R_8085132_SNP [dm3] 3R_12259410_SNP [dm6]	C	T	2.136e^-4	0.789	INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da
3R	3286425	3R_3286425_SNP [dm3] 3R_7460703_SNP [dm6]	G	C	2.140e^-4	0.789	INTERGENIC
2L	3274953	2L_3274953_SNP [dm3] 2L_3274953_SNP [dm6]	G	A	2.142e^-4	0.789	DOWNSTREAM CG3332 INTERGENIC
3L	14138991	3L_14138991_SNP [dm3] 3L_14145891_SNP [dm6]	T	A	2.148e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	20133827	2L_20133827_SNP [dm3] 2L_20133827_SNP [dm6]	T	A	2.153e^-4	0.789	UTR_3_PRIME CG10651
3R	12037526	3R_12037526_INS [dm3] 3R_16211804_INS [dm6]	T	TT	2.158e^-4	0.789	INTERGENIC
X	3590851	X_3590851_SNP [dm3] X_3696818_SNP [dm6]	A	G	2.174e^-4	0.789	INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	6789756	X_6789756_SNP [dm3] X_6895723_SNP [dm6]	G	C	2.175e^-4	0.789	INTERGENIC
X	13196012	X_13196012_SNP [dm3] X_13301979_SNP [dm6]	A	G	2.182e^-4	0.789	INTRON CG1764
2R	6507219	2R_6507219_SNP [dm3] 2R_10619714_SNP [dm6]	T	G	2.183e^-4	0.789	INTRON CG11883
3R	3274115	3R_3274115_SNP [dm3] 3R_7448393_SNP [dm6]	C	T	2.186e^-4	0.789	INTERGENIC
2L	6770098	2L_6770098_SNP [dm3] 2L_6770098_SNP [dm6]	T	A	2.198e^-4	0.789	INTRON CG11321	TF binding site mE1_TFBS_chinmo
2L	5761815	2L_5761815_DEL [dm3] 2L_5761815_DEL [dm6]	TAAT	T	2.202e^-4	0.789	UTR_3_PRIME CG11030 DOWNSTREAM obst-E
2R	16145620	2R_16145620_SNP [dm3] 2R_20258115_SNP [dm6]	C	T	2.210e^-4	0.789	START_GAINED Hsl UTR_5_PRIME Hsl UPSTREAM Ate1 INTRON Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	6795585	2L_6795585_SNP [dm3] 2L_6795585_SNP [dm6]	T	G	2.212e^-4	0.789	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	9918954	3L_9918954_SNP [dm3] 3L_9925854_SNP [dm6]	G	T	2.221e^-4	0.789	INTRON CG34356
X	16558837	X_16558837_SNP [dm3] X_16664804_SNP [dm6]	A	C	2.227e^-4	0.789	UPSTREAM CG15865 INTRON r
3R	21874427	3R_21874427_SNP [dm3] 3R_26048705_SNP [dm6]	G	A	2.231e^-4	0.789	UTR_3_PRIME gro
3R	23444490	3R_23444490_SNP [dm3] 3R_27618768_SNP [dm6]	C	G	2.234e^-4	0.789	INTRON Tusp
3R	19836408	3R_19836408_SNP [dm3] 3R_24010686_SNP [dm6]	A	G	2.237e^-4	0.789	INTRON KrT95D
2L	12348767	2L_12348767_SNP [dm3] 2L_12348767_SNP [dm6]	A	G	2.242e^-4	0.789	INTRON bru-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1643375	2L_1643375_SNP [dm3] 2L_1643375_SNP [dm6]	A	G	2.255e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12342835	3L_12342835_SNP [dm3] 3L_12349735_SNP [dm6]	C	T	2.255e^-4	0.789	INTRON CrzR
2R	7442255	2R_7442255_SNP [dm3] 2R_11554750_SNP [dm6]	G	A	2.260e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	726157	2R_726157_SNP [dm3] 2R_4838652_SNP [dm6]	A	G	2.270e^-4	0.789	INTERGENIC
2L	10759178	2L_10759178_SNP [dm3] 2L_10759178_SNP [dm6]	G	A	2.271e^-4	0.789	INTERGENIC
2L	6807748	2L_6807748_SNP [dm3] 2L_6807748_SNP [dm6]	T	C	2.272e^-4	0.789	INTERGENIC
3R	23539635	3R_23539635_SNP [dm3] 3R_27713913_SNP [dm6]	A	T	2.276e^-4	0.789	INTERGENIC
3L	14242903	3L_14242903_SNP [dm3] 3L_14249803_SNP [dm6]	G	C	2.281e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3016779	2R_3016779_SNP [dm3] 2R_7129274_SNP [dm6]	G	A	2.281e^-4	0.789	NON_SYNONYMOUS_CODING Cyp9b1
3R	24213228	3R_24213228_SNP [dm3] 3R_28387506_SNP [dm6]	A	G	2.281e^-4	0.789	INTERGENIC
2R	9903796	2R_9903796_SNP [dm3] 2R_14016291_SNP [dm6]	C	T	2.289e^-4	0.789	INTRON mam
2L	2876713	2L_2876713_SNP [dm3] 2L_2876713_SNP [dm6]	G	T	2.293e^-4	0.789	DOWNSTREAM Prx6005 INTRON CG8814
3L	3077032	3L_3077032_SNP [dm3] 3L_3077032_SNP [dm6]	C	T	2.298e^-4	0.789	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	15477429	3L_15477429_SNP [dm3] 3L_15484329_SNP [dm6]	T	G	2.303e^-4	0.789	DOWNSTREAM Ran-like INTERGENIC
3R	25977673	3R_25977673_SNP [dm3] 3R_30151951_SNP [dm6]	G	A	2.308e^-4	0.789	UPSTREAM CG15529 INTERGENIC	TF binding site mE1_TFBS_cad
X	12431591	X_12431591_SNP [dm3] X_12537558_SNP [dm6]	A	T	2.312e^-4	0.789	INTRON CG43921
2L	1343223	2L_1343223_SNP [dm3] 2L_1343223_SNP [dm6]	G	T	2.316e^-4	0.789	DOWNSTREAM CG33922 INTERGENIC
2L	6805122	2L_6805122_SNP [dm3] 2L_6805122_SNP [dm6]	C	T	2.322e^-4	0.789	SYNONYMOUS_CODING CG17375 DOWNSTREAM CG11236	TF binding site mE1_TFBS_cad
2L	1040780	2L_1040780_SNP [dm3] 2L_1040780_SNP [dm6]	G	T	2.323e^-4	0.789	INTRON IA-2
X	5253122	X_5253122_SNP [dm3] X_5359089_SNP [dm6]	T	C	2.324e^-4	0.789	INTRON SK
3R	19835957	3R_19835957_SNP [dm3] 3R_24010235_SNP [dm6]	G	C	2.324e^-4	0.789	INTRON KrT95D
2R	18586267	2R_18586267_SNP [dm3] 2R_22698762_SNP [dm6]	T	A	2.328e^-4	0.789	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15191314	X_15191314_SNP [dm3] X_15297281_SNP [dm6]	T	G	2.331e^-4	0.789	UPSTREAM gce DOWNSTREAM CR44429 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12376218	3R_12376218_SNP [dm3] 3R_16550496_SNP [dm6]	G	C	2.340e^-4	0.789	INTRON CG42342	TF binding site BDTNP1_TFBS_da
2L	17481178	2L_17481178_SNP [dm3] 2L_17481178_SNP [dm6]	T	G	2.341e^-4	0.789	UPSTREAM CG5110 & 1 other DOWNSTREAM CG6453 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19840792	3R_19840792_SNP [dm3] 3R_24015070_SNP [dm6]	A	T	2.343e^-4	0.789	INTRON KrT95D
3L	7734819	3L_7734819_SNP [dm3] 3L_7741719_SNP [dm6]	T	A	2.346e^-4	0.789	INTRON CG32373 & 1 other
2L	6135307	2L_6135307_INS [dm3] 2L_6135307_INS [dm6]	G	GCAGC	2.348e^-4	0.789	INTERGENIC
3L	3366141	3L_3366141_SNP [dm3] 3L_3366141_SNP [dm6]	G	A	2.353e^-4	0.789	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13669306	3L_13669306_INS [dm3] 3L_13676206_INS [dm6]	G	GG	2.360e^-4	0.789	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	8744223	3L_8744223_SNP [dm3] 3L_8751123_SNP [dm6]	T	A	2.360e^-4	0.789	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13035257	3R_13035257_SNP [dm3] 3R_17209535_SNP [dm6]	C	T	2.361e^-4	0.789	INTERGENIC
X	11375220	X_11375220_SNP [dm3] X_11481187_SNP [dm6]	C	A	2.361e^-4	0.789	INTRON Cyp4g15
2R	13995646	2R_13995646_INS [dm3] 2R_18108141_INS [dm6]	T	TT	2.365e^-4	0.789	SPLICE_SITE_DONOR CG5756 INTRON CG5756
X	8250499	X_8250499_SNP [dm3] X_8356466_SNP [dm6]	G	T	2.369e^-4	0.789	INTRON nAChRalpha3
2R	10422136	2R_10422136_SNP [dm3] 2R_14534631_SNP [dm6]	A	T	2.378e^-4	0.789	INTRON ttv
3R	19823403	3R_19823403_SNP [dm3] 3R_23997681_SNP [dm6]	C	T	2.382e^-4	0.789	UTR_3_PRIME KrT95D DOWNSTREAM LSm3 & 2 others
2R	4011377	2R_4011377_SNP [dm3] 2R_8123872_SNP [dm6]	A	G	2.382e^-4	0.789	NON_SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site mE1_TFBS_sens
3R	7120378	3R_7120378_SNP [dm3] 3R_11294656_SNP [dm6]	G	C	2.384e^-4	0.789	INTRON CR31386
2L	9352759	2L_9352759_SNP [dm3] 2L_9352759_SNP [dm6]	C	A	2.388e^-4	0.789	INTERGENIC
3R	19836069	3R_19836069_SNP [dm3] 3R_24010347_SNP [dm6]	T	A	2.393e^-4	0.789	INTRON KrT95D
3L	6822420	3L_6822420_SNP [dm3] 3L_6829320_SNP [dm6]	C	T	2.403e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	976909	2R_976909_DEL [dm3] 2R_5089404_DEL [dm6]	AACTA	A	2.419e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	2.440e^-4	0.789	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2R	3208446	2R_3208446_SNP [dm3] 2R_7320941_SNP [dm6]	A	G	2.447e^-4	0.789	INTRON Dscam1
X	9923439	X_9923439_SNP [dm3] X_10029406_SNP [dm6]	G	A	2.447e^-4	0.789	INTRON Cht6
2L	6137809	2L_6137809_DEL [dm3] 2L_6137809_DEL [dm6]	GATTAGCCTGAAATATTAAA...	G	2.448e^-4	0.789	INTERGENIC
2L	6137859	2L_6137859_SNP [dm3] 2L_6137859_SNP [dm6]	T	A	2.448e^-4	0.789	INTERGENIC
2L	6137866	2L_6137866_SNP [dm3] 2L_6137866_SNP [dm6]	G	A	2.448e^-4	0.789	INTERGENIC
2L	6137909	2L_6137909_DEL [dm3] 2L_6137909_DEL [dm6]	ATAGTAAG	T	2.448e^-4	0.789	DOWNSTREAM CR44824 INTERGENIC
2L	6137921	2L_6137921_SNP [dm3] 2L_6137921_SNP [dm6]	C	T	2.448e^-4	0.789	DOWNSTREAM CR44824 INTERGENIC
2R	13450843	2R_13450843_SNP [dm3] 2R_17563338_SNP [dm6]	C	T	2.452e^-4	0.789	UPSTREAM CG43324 DOWNSTREAM Klp54D INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	1406764	2L_1406764_SNP [dm3] 2L_1406764_SNP [dm6]	G	C	2.458e^-4	0.789	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12635348	2R_12635348_SNP [dm3] 2R_16747843_SNP [dm6]	A	C	2.462e^-4	0.789	UTR_3_PRIME Acp53C14a DOWNSTREAM Acp53C14a & 1 other
3R	9355085	3R_9355085_SNP [dm3] 3R_13529363_SNP [dm6]	T	A	2.469e^-4	0.789	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
X	14976269	X_14976269_INS [dm3] X_15082236_INS [dm6]	C	CATC	2.469e^-4	0.789	UTR_3_PRIME CG33177 UPSTREAM CR44662 & 1 other DOWNSTREAM CR44960
3L	3078823	3L_3078823_SNP [dm3] 3L_3078823_SNP [dm6]	T	C	2.485e^-4	0.789	INTRON CG11486
3R	19468438	3R_19468438_SNP [dm3] 3R_23642716_SNP [dm6]	C	G	2.489e^-4	0.789	INTRON CG31145	TF binding site mE1_TFBS_chinmo
2L	6231161	2L_6231161_SNP [dm3] 2L_6231161_SNP [dm6]	C	A	2.489e^-4	0.789	UPSTREAM CR44823 INTERGENIC
2R	4023301	2R_4023301_MNP [dm3] 2R_8135796_MNP [dm6]	AAT	TTA	2.490e^-4	0.789	UPSTREAM Obp44a INTERGENIC
3R	1055411	3R_1055411_SNP [dm3] 3R_5229689_SNP [dm6]	A	G	2.491e^-4	0.789	INTRON Kat60
3L	10020935	3L_10020935_SNP [dm3] 3L_10027835_SNP [dm6]	C	A	2.496e^-4	0.789	INTRON dpr6
2R	18950219	2R_18950219_SNP [dm3] 2R_23062696_SNP [dm6]	C	T	2.503e^-4	0.789	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20628398	3R_20628398_SNP [dm3] 3R_24802676_SNP [dm6]	C	T	2.512e^-4	0.789	SYNONYMOUS_CODING polybromo
3R	20628407	3R_20628407_SNP [dm3] 3R_24802685_SNP [dm6]	T	C	2.512e^-4	0.789	SYNONYMOUS_CODING polybromo
3R	6306454	3R_6306454_SNP [dm3] 3R_10480732_SNP [dm6]	G	A	2.513e^-4	0.789	INTERGENIC
3R	23520343	3R_23520343_SNP [dm3] 3R_27694621_SNP [dm6]	A	G	2.513e^-4	0.789	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
2R	8919076	2R_8919076_SNP [dm3] 2R_13031571_SNP [dm6]	A	T	2.517e^-4	0.789	INTERGENIC
3L	7596697	3L_7596697_SNP [dm3] 3L_7603597_SNP [dm6]	G	A	2.523e^-4	0.789	INTRON CG33275
2L	1844834	2L_1844834_SNP [dm3] 2L_1844834_SNP [dm6]	T	A	2.529e^-4	0.789	INTRON wry
2R	12359699	2R_12359699_SNP [dm3] 2R_16472194_SNP [dm6]	A	T	2.531e^-4	0.789	INTERGENIC
3L	9303202	3L_9303202_SNP [dm3] 3L_9310102_SNP [dm6]	A	G	2.532e^-4	0.789	INTERGENIC
2R	10581851	2R_10581851_SNP [dm3] 2R_14694346_SNP [dm6]	G	C	2.539e^-4	0.789	INTRON mspo
2R	3423168	2R_3423168_SNP [dm3] 2R_7535663_SNP [dm6]	C	A	2.541e^-4	0.789	UTR_3_PRIME Cyt-b5 UPSTREAM CG2137
2L	1645244	2L_1645244_SNP [dm3] 2L_1645244_SNP [dm6]	G	A	2.541e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3801343	2L_3801343_SNP [dm3] 2L_3801343_SNP [dm6]	C	A	2.547e^-4	0.789	NON_SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_chinmo
3L	18135322	3L_18135322_SNP [dm3] 3L_18142222_SNP [dm6]	G	T	2.552e^-4	0.789	INTRON gk
2R	12359728	2R_12359728_SNP [dm3] 2R_16472223_SNP [dm6]	A	T	2.554e^-4	0.789	INTERGENIC
2L	11712886	2L_11712886_SNP [dm3] 2L_11712886_SNP [dm6]	G	A	2.554e^-4	0.789	INTERGENIC
2R	14212878	2R_14212878_SNP [dm3] 2R_18325373_SNP [dm6]	G	A	2.555e^-4	0.789	INTRON sbb
3R	8069069	3R_8069069_SNP [dm3] 3R_12243347_SNP [dm6]	C	G	2.558e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14210894	3L_14210894_SNP [dm3] 3L_14217794_SNP [dm6]	T	G	2.567e^-4	0.789	UPSTREAM CG7768 INTRON nuf
3L	8744226	3L_8744226_SNP [dm3] 3L_8751126_SNP [dm6]	C	T	2.569e^-4	0.789	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14016666	3L_14016666_SNP [dm3] 3L_14023566_SNP [dm6]	G	A	2.577e^-4	0.789	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	2357337	3L_2357337_SNP [dm3] 3L_2357337_SNP [dm6]	C	T	2.579e^-4	0.789	INTERGENIC
2L	11561187	2L_11561187_INS [dm3] 2L_11561187_INS [dm6]	T	TT	2.580e^-4	0.789	UPSTREAM CR44495 INTERGENIC
2L	13327357	2L_13327357_SNP [dm3] 2L_13327357_SNP [dm6]	G	A	2.590e^-4	0.789	INTRON CG43778
2L	8529270	2L_8529270_SNP [dm3] 2L_8529270_SNP [dm6]	C	A	2.594e^-4	0.789	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
3R	7760894	3R_7760894_INS [dm3] 3R_11935172_INS [dm6]	C	CT	2.595e^-4	0.789	INTRON Cad87A
2L	20517026	2L_20517026_SNP [dm3] 2L_20517026_SNP [dm6]	A	G	2.597e^-4	0.789	INTERGENIC
2L	4931292	2L_4931292_SNP [dm3] 2L_4931292_SNP [dm6]	G	A	2.600e^-4	0.789	INTRON hoe1
2R	4789330	2R_4789330_SNP [dm3] 2R_8901825_SNP [dm6]	C	T	2.602e^-4	0.789	UPSTREAM MrgBP INTRON Ggamma1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17079071	3R_17079071_SNP [dm3] 3R_21253349_SNP [dm6]	G	T	2.613e^-4	0.789	INTRON ETHR
X	13812688	X_13812688_SNP [dm3] X_13918655_SNP [dm6]	G	A	2.614e^-4	0.789	INTRON mamo
X	16430602	X_16430602_SNP [dm3] X_16536569_SNP [dm6]	A	T	2.619e^-4	0.789	INTERGENIC
2L	8209514	2L_8209514_SNP [dm3] 2L_8209514_SNP [dm6]	C	T	2.623e^-4	0.789	UTR_3_PRIME CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1693575	2L_1693575_SNP [dm3] 2L_1693575_SNP [dm6]	G	A	2.633e^-4	0.789	INTRON chinmo
3R	21234879	3R_21234879_SNP [dm3] 3R_25409157_SNP [dm6]	T	A	2.633e^-4	0.789	INTRON Fur1
2L	6231177	2L_6231177_SNP [dm3] 2L_6231177_SNP [dm6]	A	T	2.649e^-4	0.789	UPSTREAM CR44823 INTERGENIC
3L	7596809	3L_7596809_SNP [dm3] 3L_7603709_SNP [dm6]	C	T	2.649e^-4	0.789	NON_SYNONYMOUS_CODING CG33275
3L	7481085	3L_7481085_SNP [dm3] 3L_7487985_SNP [dm6]	A	T	2.653e^-4	0.789	DOWNSTREAM mthl6 INTERGENIC
2L	6137847	2L_6137847_SNP [dm3] 2L_6137847_SNP [dm6]	A	G	2.656e^-4	0.789	INTERGENIC
3L	8373246	3L_8373246_SNP [dm3] 3L_8380146_SNP [dm6]	C	T	2.657e^-4	0.789	UTR_3_PRIME ImpE1 INTRON ImpE1
2L	8209460	2L_8209460_SNP [dm3] 2L_8209460_SNP [dm6]	C	A	2.659e^-4	0.789	UTR_3_PRIME CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1507769	2L_1507769_SNP [dm3] 2L_1507769_SNP [dm6]	G	T	2.661e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12332445	2R_12332445_SNP [dm3] 2R_16444940_SNP [dm6]	C	T	2.662e^-4	0.789	DOWNSTREAM CG4409 INTERGENIC
2L	1655880	2L_1655880_SNP [dm3] 2L_1655880_SNP [dm6]	A	G	2.667e^-4	0.789	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	9352491	2L_9352491_SNP [dm3] 2L_9352491_SNP [dm6]	A	T	2.669e^-4	0.789	INTERGENIC
3L	7481149	3L_7481149_SNP [dm3] 3L_7488049_SNP [dm6]	T	C	2.671e^-4	0.789	DOWNSTREAM mthl6 INTERGENIC
3R	25537599	3R_25537599_SNP [dm3] 3R_29711877_SNP [dm6]	C	A	2.672e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12342743	3L_12342743_SNP [dm3] 3L_12349643_SNP [dm6]	G	C	2.676e^-4	0.789	INTRON CrzR
3R	17646930	3R_17646930_SNP [dm3] 3R_21821208_SNP [dm6]	A	G	2.678e^-4	0.789	INTRON CASK	TF binding site mE1_TFBS_Trl
2R	15224147	2R_15224147_SNP [dm3] 2R_19336642_SNP [dm6]	T	C	2.680e^-4	0.789	INTRON Rgk1
3L	13668594	3L_13668594_SNP [dm3] 3L_13675494_SNP [dm6]	T	C	2.681e^-4	0.789	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16447661	3L_16447661_SNP [dm3] 3L_16454561_SNP [dm6]	T	G	2.684e^-4	0.789	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8746866	3L_8746866_SNP [dm3] 3L_8753766_SNP [dm6]	C	T	2.692e^-4	0.789	START_GAINED Fhos UTR_5_PRIME Fhos UPSTREAM Fhos
X	16507089	X_16507089_SNP [dm3] X_16613056_SNP [dm6]	A	G	2.698e^-4	0.789	INTRON mbt
3R	9049757	3R_9049757_SNP [dm3] 3R_13224035_SNP [dm6]	T	G	2.706e^-4	0.789	DOWNSTREAM Ace INTRON Ace
3L	6049180	3L_6049180_SNP [dm3] 3L_6056080_SNP [dm6]	A	C	2.712e^-4	0.789	SYNONYMOUS_CODING tan	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17079075	3R_17079075_SNP [dm3] 3R_21253353_SNP [dm6]	A	G	2.715e^-4	0.789	INTRON ETHR
3R	13827732	3R_13827732_INS [dm3] 3R_18002010_INS [dm6]	A	AA	2.720e^-4	0.789	INTRON cpo
2L	9354832	2L_9354832_SNP [dm3] 2L_9354832_SNP [dm6]	T	C	2.721e^-4	0.789	INTERGENIC
2L	13328373	2L_13328373_SNP [dm3] 2L_13328373_SNP [dm6]	A	T	2.725e^-4	0.789	INTRON CG43778
2L	13328407	2L_13328407_SNP [dm3] 2L_13328407_SNP [dm6]	C	T	2.725e^-4	0.789	INTRON CG43778
2L	15650716	2L_15650716_SNP [dm3] 2L_15650716_SNP [dm6]	T	G	2.726e^-4	0.789	INTRON CG4587	TF binding site mE1_TFBS_inv
2R	3872611	2R_3872611_SNP [dm3] 2R_7985106_SNP [dm6]	G	A	2.731e^-4	0.789	NON_SYNONYMOUS_CODING ACC
3R	23486469	3R_23486469_SNP [dm3] 3R_27660747_SNP [dm6]	T	C	2.734e^-4	0.789	UPSTREAM Mlc1 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9427432	2L_9427432_SNP [dm3] 2L_9427432_SNP [dm6]	C	A	2.740e^-4	0.79	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2R	4026610	2R_4026610_SNP [dm3] 2R_8139105_SNP [dm6]	G	A	2.756e^-4	0.792	INTRON Lpin
2L	11141835	2L_11141835_SNP [dm3] 2L_11141835_SNP [dm6]	T	G	2.758e^-4	0.792	INTRON Gyc32E
3R	16174021	3R_16174021_SNP [dm3] 3R_20348299_SNP [dm6]	G	T	2.762e^-4	0.792	INTERGENIC
3L	3444796	3L_3444796_SNP [dm3] 3L_3444796_SNP [dm6]	T	C	2.770e^-4	0.792	INTRON eIF5B	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	15894611	2R_15894611_INS [dm3] 2R_20007106_INS [dm6]	G	GG	2.784e^-4	0.792	EXON CR44628	TF binding site mE1_TFBS_Trl
3L	8010074	3L_8010074_INS [dm3] 3L_8016974_INS [dm6]	T	TT	2.789e^-4	0.792	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10434015	3R_10434015_SNP [dm3] 3R_14608293_SNP [dm6]	T	C	2.796e^-4	0.792	DOWNSTREAM stumps INTERGENIC	TF binding site mE1_TFBS_Trl
X	16145601	X_16145601_SNP [dm3] X_16251568_SNP [dm6]	A	C	2.799e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10422139	2R_10422139_SNP [dm3] 2R_14534634_SNP [dm6]	C	G	2.803e^-4	0.792	INTRON ttv
3R	21045935	3R_21045935_SNP [dm3] 3R_25220213_SNP [dm6]	T	C	2.808e^-4	0.792	SYNONYMOUS_CODING CG31103	TF binding site BDTNP1_TFBS_dl
3L	7997071	3L_7997071_SNP [dm3] 3L_8003971_SNP [dm6]	A	G	2.818e^-4	0.792	INTRON nmo
3L	9728533	3L_9728533_SNP [dm3] 3L_9735433_SNP [dm6]	T	A	2.819e^-4	0.792	INTRON CG42268
3R	3543258	3R_3543258_INS [dm3] 3R_7717536_INS [dm6]	C	CAACACAATGTAGAC...	2.820e^-4	0.792	INTERGENIC
2R	3873093	2R_3873093_SNP [dm3] 2R_7985588_SNP [dm6]	T	C	2.820e^-4	0.792	INTRON ACC
2R	7764893	2R_7764893_SNP [dm3] 2R_11877388_SNP [dm6]	G	C	2.820e^-4	0.792	SYNONYMOUS_CODING CG13185
3R	1740458	3R_1740458_SNP [dm3] 3R_5914736_SNP [dm6]	C	A	2.821e^-4	0.792	INTRON CG34113
X	5510605	X_5510605_SNP [dm3] X_5616572_SNP [dm6]	G	C	2.822e^-4	0.792	UTR_3_PRIME RhoGAP5A UPSTREAM CG34434
2L	4911560	2L_4911560_SNP [dm3] 2L_4911560_SNP [dm6]	C	T	2.824e^-4	0.792	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12359657	2R_12359657_SNP [dm3] 2R_16472152_SNP [dm6]	G	A	2.834e^-4	0.793	INTERGENIC
3L	8742137	3L_8742137_SNP [dm3] 3L_8749037_SNP [dm6]	T	A	2.839e^-4	0.793	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10750170	2L_10750170_SNP [dm3] 2L_10750170_SNP [dm6]	T	A	2.844e^-4	0.793	INTRON CG17124
3L	14016649	3L_14016649_SNP [dm3] 3L_14023549_SNP [dm6]	T	G	2.850e^-4	0.793	INTRON ptip	TF binding site mE1_TFBS_chinmo
3R	5551537	3R_5551537_SNP [dm3] 3R_9725815_SNP [dm6]	C	G	2.861e^-4	0.793	UPSTREAM hyd DOWNSTREAM FoxP INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15223363	2L_15223363_SNP [dm3] 2L_15223363_SNP [dm6]	T	C	2.864e^-4	0.793	INTERGENIC
2L	15223364	2L_15223364_SNP [dm3] 2L_15223364_SNP [dm6]	T	A	2.864e^-4	0.793	INTERGENIC
3L	15782513	3L_15782513_SNP [dm3] 3L_15789413_SNP [dm6]	G	A	2.873e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10929086	3L_10929086_SNP [dm3] 3L_10935986_SNP [dm6]	G	A	2.874e^-4	0.793	INTERGENIC
3R	22899508	3R_22899508_SNP [dm3] 3R_27073786_SNP [dm6]	G	T	2.874e^-4	0.793	INTERGENIC
2L	1746014	2L_1746014_SNP [dm3] 2L_1746014_SNP [dm6]	C	T	2.875e^-4	0.793	SYNONYMOUS_CODING CG17646
2R	11108166	2R_11108166_SNP [dm3] 2R_15220661_SNP [dm6]	C	G	2.884e^-4	0.793	UPSTREAM Hex-C INTRON CG8079
2R	11108636	2R_11108636_SNP [dm3] 2R_15221131_SNP [dm6]	A	T	2.884e^-4	0.793	UPSTREAM Hex-C INTRON CG8079
2L	6795471	2L_6795471_SNP [dm3] 2L_6795471_SNP [dm6]	C	A	2.892e^-4	0.794	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	8210242	2L_8210242_SNP [dm3] 2L_8210242_SNP [dm6]	G	A	2.896e^-4	0.794	DOWNSTREAM CG8419 INTRON Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6800971	2L_6800971_SNP [dm3] 2L_6800971_SNP [dm6]	C	A	2.905e^-4	0.794	UPSTREAM CG17376 DOWNSTREAM CG17377 INTERGENIC	regulatory region REDfly_CRMs
3R	1850191	3R_1850191_SNP [dm3] 3R_6024469_SNP [dm6]	T	C	2.923e^-4	0.794	INTERGENIC
X	16481852	X_16481852_SNP [dm3] X_16587819_SNP [dm6]	A	G	2.945e^-4	0.794	UPSTREAM CG13014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	12649372	X_12649372_SNP [dm3] X_12755339_SNP [dm6]	C	T	2.949e^-4	0.794	DOWNSTREAM CR44619 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	21209035	3R_21209035_SNP [dm3] 3R_25383313_SNP [dm6]	C	T	2.950e^-4	0.794	UPSTREAM CG31437 & 1 other INTRON Fur1
3R	20627887	3R_20627887_SNP [dm3] 3R_24802165_SNP [dm6]	T	C	2.962e^-4	0.794	SYNONYMOUS_CODING polybromo	TF binding site mE1_TFBS_sens
3R	7879599	3R_7879599_SNP [dm3] 3R_12053877_SNP [dm6]	T	C	2.964e^-4	0.794	INTERGENIC
3R	18695107	3R_18695107_SNP [dm3] 3R_22869385_SNP [dm6]	G	A	2.969e^-4	0.794	INTERGENIC
3L	12950322	3L_12950322_SNP [dm3] 3L_12957222_SNP [dm6]	T	C	2.974e^-4	0.794	INTERGENIC
3R	12366990	3R_12366990_SNP [dm3] 3R_16541268_SNP [dm6]	G	A	2.983e^-4	0.794	INTRON CG42342
X	4254521	X_4254521_SNP [dm3] X_4360488_SNP [dm6]	G	A	2.987e^-4	0.794	SYNONYMOUS_CODING norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6795476	2L_6795476_SNP [dm3] 2L_6795476_SNP [dm6]	T	A	2.988e^-4	0.794	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	8061677	3R_8061677_SNP [dm3] 3R_12235955_SNP [dm6]	G	C	2.994e^-4	0.794	SYNONYMOUS_CODING Cyp313a2
3R	9351983	3R_9351983_SNP [dm3] 3R_13526261_SNP [dm6]	T	C	2.995e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10455520	2L_10455520_SNP [dm3] 2L_10455520_SNP [dm6]	T	G	2.999e^-4	0.794	SYNONYMOUS_CODING CG5322
3R	25606435	3R_25606435_SNP [dm3] 3R_29780713_SNP [dm6]	G	T	3.000e^-4	0.794	UPSTREAM fig INTRON kay
3L	3366139	3L_3366139_SNP [dm3] 3L_3366139_SNP [dm6]	T	A	3.004e^-4	0.794	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8205304	2L_8205304_INS [dm3] 2L_8205304_INS [dm6]	A	AAACTAAATGTATATGACT...	3.006e^-4	0.794	UPSTREAM SLC5A11 & 1 other DOWNSTREAM CR44120 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19218035	2L_19218035_SNP [dm3] 2L_19218035_SNP [dm6]	G	A	3.008e^-4	0.794	EXON CR44189	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8142477	X_8142477_SNP [dm3] X_8248444_SNP [dm6]	G	A	3.012e^-4	0.794	DOWNSTREAM ND75 & 1 other INTERGENIC
3L	8313289	3L_8313289_SNP [dm3] 3L_8320189_SNP [dm6]	G	A	3.013e^-4	0.794	UPSTREAM CG13670 INTERGENIC
3L	9301562	3L_9301562_SNP [dm3] 3L_9308462_SNP [dm6]	T	A	3.013e^-4	0.794	INTERGENIC
2L	8385803	2L_8385803_SNP [dm3] 2L_8385803_SNP [dm6]	T	C	3.014e^-4	0.794	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9196028	2R_9196028_SNP [dm3] 2R_13308523_SNP [dm6]	C	A	3.015e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7252058	2L_7252058_SNP [dm3] 2L_7252058_SNP [dm6]	T	C	3.021e^-4	0.794	SYNONYMOUS_CODING CG13786	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21210259	3R_21210259_SNP [dm3] 3R_25384537_SNP [dm6]	T	C	3.021e^-4	0.794	SYNONYMOUS_CODING CG31437 DOWNSTREAM Fur1 INTRON Fur1
3R	10308410	3R_10308410_SNP [dm3] 3R_14482688_SNP [dm6]	C	G	3.025e^-4	0.794	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3078616	3L_3078616_SNP [dm3] 3L_3078616_SNP [dm6]	C	T	3.026e^-4	0.794	INTRON CG11486	TF binding site BDTNP1_TFBS_dl
X	8621586	X_8621586_SNP [dm3] X_8727553_SNP [dm6]	C	T	3.031e^-4	0.794	INTERGENIC
2L	1663403	2L_1663403_SNP [dm3] 2L_1663403_SNP [dm6]	G	A	3.033e^-4	0.794	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
X	20396892	X_20396892_SNP [dm3] X_20525865_SNP [dm6]	T	C	3.040e^-4	0.794	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	3024685	3L_3024685_SNP [dm3] 3L_3024685_SNP [dm6]	T	C	3.047e^-4	0.794	SYNONYMOUS_CODING aly
3R	13653406	3R_13653406_SNP [dm3] 3R_17827684_SNP [dm6]	C	G	3.057e^-4	0.794	INTRON tinc	TF binding site mE1_TFBS_cad
2R	9236824	2R_9236824_SNP [dm3] 2R_13349319_SNP [dm6]	A	G	3.058e^-4	0.794	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9009527	3L_9009527_INS [dm3] 3L_9016427_INS [dm6]	G	GAG	3.064e^-4	0.794	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	15318389	3L_15318389_DEL [dm3] 3L_15325289_DEL [dm6]	GACACGTTAGCAAGTTCTTA...	G	3.070e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5550337	2L_5550337_SNP [dm3] 2L_5550337_SNP [dm6]	G	C	3.072e^-4	0.794	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12950475	3L_12950475_SNP [dm3] 3L_12957375_SNP [dm6]	G	C	3.072e^-4	0.794	INTERGENIC
2L	495720	2L_495720_SNP [dm3] 2L_495720_SNP [dm6]	T	A	3.084e^-4	0.794	INTRON ush
3L	14016648	3L_14016648_SNP [dm3] 3L_14023548_SNP [dm6]	A	G	3.086e^-4	0.794	INTRON ptip	TF binding site mE1_TFBS_chinmo
X	5369335	X_5369335_SNP [dm3] X_5475302_SNP [dm6]	T	C	3.105e^-4	0.794	INTRON SPR
2L	8205979	2L_8205979_SNP [dm3] 2L_8205979_SNP [dm6]	A	G	3.111e^-4	0.794	UPSTREAM SLC5A11 & 2 others DOWNSTREAM CR44119 EXON CR44121	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3077110	3L_3077110_SNP [dm3] 3L_3077110_SNP [dm6]	C	A	3.114e^-4	0.794	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	12215826	X_12215826_SNP [dm3] X_12321793_SNP [dm6]	A	G	3.120e^-4	0.794	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14426840	2R_14426840_SNP [dm3] 2R_18539335_SNP [dm6]	A	T	3.122e^-4	0.794	UTR_3_PRIME CG45087 & 1 other UPSTREAM Rgk2	TF binding site mE1_TFBS_chinmo
2R	3748731	2R_3748731_SNP [dm3] 2R_7861226_SNP [dm6]	C	T	3.124e^-4	0.794	INTRON Dgk
2L	11682248	2L_11682248_SNP [dm3] 2L_11682248_SNP [dm6]	T	A	3.128e^-4	0.794	INTERGENIC
3L	12486775	3L_12486775_SNP [dm3] 3L_12493675_SNP [dm6]	A	T	3.133e^-4	0.794	DOWNSTREAM CR45682 INTRON CG10657
3L	12950330	3L_12950330_SNP [dm3] 3L_12957230_SNP [dm6]	C	T	3.135e^-4	0.794	INTERGENIC
3R	3283262	3R_3283262_SNP [dm3] 3R_7457540_SNP [dm6]	A	G	3.140e^-4	0.794	INTERGENIC
3R	3283314	3R_3283314_SNP [dm3] 3R_7457592_SNP [dm6]	C	A	3.140e^-4	0.794	INTERGENIC
2R	15087059	2R_15087059_SNP [dm3] 2R_19199554_SNP [dm6]	G	A	3.149e^-4	0.794	INTRON hppy
2L	5272690	2L_5272690_SNP [dm3] 2L_5272690_SNP [dm6]	A	G	3.158e^-4	0.794	SYNONYMOUS_CODING Bsg25D
3L	15526821	3L_15526821_SNP [dm3] 3L_15533721_SNP [dm6]	A	T	3.162e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	8083055	3L_8083055_SNP [dm3] 3L_8089955_SNP [dm6]	G	T	3.171e^-4	0.794	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site mE1_TFBS_sens
3R	1800917	3R_1800917_SNP [dm3] 3R_5975195_SNP [dm6]	C	A	3.174e^-4	0.794	START_GAINED Obp83a UTR_5_PRIME Obp83a UPSTREAM Obp83a DOWNSTREAM Obp83b
3L	9518086	3L_9518086_SNP [dm3] 3L_9524986_SNP [dm6]	C	T	3.175e^-4	0.794	INTRON CG33700
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	3.178e^-4	0.794	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
X	2753619	X_2753619_SNP [dm3] X_2859586_SNP [dm6]	T	A	3.187e^-4	0.794	INTRON kirre
2L	18024770	2L_18024770_SNP [dm3] 2L_18024770_SNP [dm6]	C	T	3.192e^-4	0.794	INTRON rdo
2L	11025081	2L_11025081_SNP [dm3] 2L_11025081_SNP [dm6]	T	C	3.207e^-4	0.794	INTRON Samuel
3R	18703297	3R_18703297_SNP [dm3] 3R_22877575_SNP [dm6]	G	T	3.209e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16507275	3L_16507275_SNP [dm3] 3L_16514175_SNP [dm6]	T	C	3.210e^-4	0.794	INTRON CG43373
2L	16093645	2L_16093645_SNP [dm3] 2L_16093645_SNP [dm6]	C	T	3.212e^-4	0.794	INTERGENIC
X	15531551	X_15531551_DEL [dm3] X_15637518_DEL [dm6]	ATT	C	3.212e^-4	0.794	DOWNSTREAM CR44423 INTERGENIC
2R	974076	2R_974076_SNP [dm3] 2R_5086571_SNP [dm6]	A	T	3.213e^-4	0.794	INTERGENIC
3R	23536409	3R_23536409_SNP [dm3] 3R_27710687_SNP [dm6]	C	T	3.213e^-4	0.794	SYNONYMOUS_CODING CG12877
X	21071726	X_21071726_SNP [dm3] X_21200699_SNP [dm6]	A	G	3.214e^-4	0.794	INTERGENIC
2R	10422153	2R_10422153_SNP [dm3] 2R_14534648_SNP [dm6]	T	C	3.236e^-4	0.794	INTRON ttv
3R	23487731	3R_23487731_DEL [dm3] 3R_27662009_DEL [dm6]	ACTTTAA	A	3.243e^-4	0.794	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23610638	3R_23610638_SNP [dm3] 3R_27784916_SNP [dm6]	T	A	3.248e^-4	0.794	INTRON CG34353
2L	6753909	2L_6753909_SNP [dm3] 2L_6753909_SNP [dm6]	T	A	3.254e^-4	0.794	INTRON CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9735439	2R_9735439_SNP [dm3] 2R_13847934_SNP [dm6]	A	G	3.258e^-4	0.794	NON_SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17765756	2R_17765756_SNP [dm3] 2R_21878251_SNP [dm6]	G	C	3.259e^-4	0.794	INTRON Fili	TF binding site mE1_TFBS_cnc
3R	18661178	3R_18661178_SNP [dm3] 3R_22835456_SNP [dm6]	C	G	3.259e^-4	0.794	INTERGENIC
2L	8609633	2L_8609633_INS [dm3] 2L_8609633_INS [dm6]	A	ACA	3.261e^-4	0.794	INTRON Sema-1a
3L	7315509	3L_7315509_SNP [dm3] 3L_7322409_SNP [dm6]	C	T	3.263e^-4	0.794	SYNONYMOUS_CODING RhoGEF4	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	10500137	X_10500137_SNP [dm3] X_10606104_SNP [dm6]	C	G	3.270e^-4	0.794	SYNONYMOUS_CODING CG43347
3L	12199023	3L_12199023_SNP [dm3] 3L_12205923_SNP [dm6]	C	T	3.271e^-4	0.794	DOWNSTREAM app INTRON CG5626	TF binding site mE1_TFBS_zfh1
3R	19835974	3R_19835974_SNP [dm3] 3R_24010252_SNP [dm6]	A	T	3.272e^-4	0.794	INTRON KrT95D
2L	3021308	2L_3021308_SNP [dm3] 2L_3021308_SNP [dm6]	T	A	3.273e^-4	0.794	UTR_3_PRIME CG17264 DOWNSTREAM alpha4GT1	TF binding site mE1_TFBS_chinmo
X	9885279	X_9885279_SNP [dm3] X_9991246_SNP [dm6]	A	G	3.275e^-4	0.794	INTRON CG32694
2L	6231157	2L_6231157_SNP [dm3] 2L_6231157_SNP [dm6]	A	T	3.278e^-4	0.794	UPSTREAM CR44823 INTERGENIC
2R	11124640	2R_11124640_SNP [dm3] 2R_15237135_SNP [dm6]	C	A	3.284e^-4	0.794	INTRON Fs	TF binding site BDTNP1_TFBS_da
3R	16173934	3R_16173934_SNP [dm3] 3R_20348212_SNP [dm6]	G	A	3.288e^-4	0.794	INTERGENIC
3L	8422491	3L_8422491_SNP [dm3] 3L_8429391_SNP [dm6]	C	A	3.294e^-4	0.794	SYNONYMOUS_CODING Cbl DOWNSTREAM Cbl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2014214	2L_2014214_INS [dm3] 2L_2014214_INS [dm6]	T	GATGTTACCCA...	3.295e^-4	0.794	UPSTREAM tRNA:CR31669 INTRON CG4238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16963277	2R_16963277_SNP [dm3] 2R_21075772_SNP [dm6]	A	G	3.297e^-4	0.794	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21655919	3R_21655919_SNP [dm3] 3R_25830197_SNP [dm6]	C	A	3.304e^-4	0.794	SYNONYMOUS_CODING Sfp96F UPSTREAM Mst57Dc DOWNSTREAM Mst57Db
3R	8695552	3R_8695552_SNP [dm3] 3R_12869830_SNP [dm6]	A	T	3.315e^-4	0.794	INTERGENIC
3L	2468868	3L_2468868_SNP [dm3] 3L_2468868_SNP [dm6]	T	C	3.319e^-4	0.794	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2R	12969928	2R_12969928_SNP [dm3] 2R_17082423_SNP [dm6]	G	A	3.321e^-4	0.794	INTRON CG30460
3L	14016657	3L_14016657_SNP [dm3] 3L_14023557_SNP [dm6]	G	A	3.333e^-4	0.794	INTRON ptip	TF binding site mE1_TFBS_chinmo
2R	12635183	2R_12635183_SNP [dm3] 2R_16747678_SNP [dm6]	G	A	3.333e^-4	0.794	DOWNSTREAM Acp53C14a INTERGENIC
2R	12635504	2R_12635504_SNP [dm3] 2R_16747999_SNP [dm6]	A	C	3.333e^-4	0.794	UTR_3_PRIME Acp53C14a DOWNSTREAM Acp53C14a & 1 other
3L	3077374	3L_3077374_SNP [dm3] 3L_3077374_SNP [dm6]	T	C	3.334e^-4	0.794	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12904398	2L_12904398_SNP [dm3] 2L_12904398_SNP [dm6]	T	A	3.338e^-4	0.794	INTERGENIC
2L	6133225	2L_6133225_INS [dm3] 2L_6133225_INS [dm6]	CC	TATATAGATAT...	3.341e^-4	0.794	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4299969	2L_4299969_SNP [dm3] 2L_4299969_SNP [dm6]	A	G	3.343e^-4	0.794	INTRON tutl
2R	1917585	2R_1917585_DEL [dm3] 2R_6030080_DEL [dm6]	AA	A	3.343e^-4	0.794	INTRON SCAP
X	5938575	X_5938575_SNP [dm3] X_6044542_SNP [dm6]	T	A	3.354e^-4	0.794	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10422145	2R_10422145_SNP [dm3] 2R_14534640_SNP [dm6]	G	A	3.357e^-4	0.794	INTRON ttv
2L	9347663	2L_9347663_INS [dm3] 2L_9347663_INS [dm6]	T	TATGGAATT	3.358e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	6133281	2L_6133281_SNP [dm3] 2L_6133281_SNP [dm6]	T	A	3.359e^-4	0.794	DOWNSTREAM CG9222 EXON CR45719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9201483	3R_9201483_SNP [dm3] 3R_13375761_SNP [dm6]	C	T	3.360e^-4	0.794	INTRON CG9813	transposable element FlyBase
2R	7317767	2R_7317767_SNP [dm3] 2R_11430262_SNP [dm6]	A	T	3.367e^-4	0.794	UPSTREAM Drip INTERGENIC
3R	10589593	3R_10589593_SNP [dm3] 3R_14763871_SNP [dm6]	T	G	3.379e^-4	0.794	INTRON jvl
3L	14219596	3L_14219596_SNP [dm3] 3L_14226496_SNP [dm6]	A	T	3.383e^-4	0.794	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3023759	3L_3023759_SNP [dm3] 3L_3023759_SNP [dm6]	G	T	3.387e^-4	0.794	DOWNSTREAM aly INTERGENIC
3L	15477355	3L_15477355_SNP [dm3] 3L_15484255_SNP [dm6]	C	A	3.388e^-4	0.794	DOWNSTREAM Ran-like INTERGENIC
3R	12302350	3R_12302350_SNP [dm3] 3R_16476628_SNP [dm6]	T	A	3.390e^-4	0.794	UPSTREAM Gyc-89Db INTERGENIC
2L	9773578	2L_9773578_SNP [dm3] 2L_9773578_SNP [dm6]	T	C	3.393e^-4	0.794	UPSTREAM ppk16 INTRON ppk11
3R	1868023	3R_1868023_SNP [dm3] 3R_6042301_SNP [dm6]	T	C	3.393e^-4	0.794	INTERGENIC
2R	4170400	2R_4170400_SNP [dm3] 2R_8282895_SNP [dm6]	C	T	3.395e^-4	0.794	INTERGENIC
2L	9347766	2L_9347766_SNP [dm3] 2L_9347766_SNP [dm6]	C	T	3.397e^-4	0.794	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	13249225	2L_13249225_SNP [dm3] 2L_13249225_SNP [dm6]	A	C	3.406e^-4	0.794	SYNONYMOUS_CODING CG16820
2L	13249231	2L_13249231_SNP [dm3] 2L_13249231_SNP [dm6]	G	T	3.406e^-4	0.794	SYNONYMOUS_CODING CG16820
3R	23547476	3R_23547476_SNP [dm3] 3R_27721754_SNP [dm6]	G	A	3.409e^-4	0.794	INTERGENIC
2R	18385682	2R_18385682_SNP [dm3] 2R_22498177_SNP [dm6]	G	A	3.430e^-4	0.794	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14051945	2L_14051945_SNP [dm3] 2L_14051945_SNP [dm6]	C	T	3.432e^-4	0.794	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12486898	3L_12486898_SNP [dm3] 3L_12493798_SNP [dm6]	T	A	3.435e^-4	0.794	DOWNSTREAM CR45682 INTRON CG10657
X	15155465	X_15155465_INS [dm3] X_15261432_INS [dm6]	G	GG	3.435e^-4	0.794	INTERGENIC
2L	8539845	2L_8539845_SNP [dm3] 2L_8539845_SNP [dm6]	A	C	3.446e^-4	0.794	INTRON CG17834
2L	9011632	2L_9011632_SNP [dm3] 2L_9011632_SNP [dm6]	G	A	3.449e^-4	0.794	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	3661867	3L_3661867_SNP [dm3] 3L_3661867_SNP [dm6]	G	T	3.452e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8157623	3L_8157623_SNP [dm3] 3L_8164523_SNP [dm6]	A	T	3.454e^-4	0.794	UPSTREAM CG13675 INTRON CG13675
3L	15349030	3L_15349030_SNP [dm3] 3L_15355930_SNP [dm6]	C	T	3.471e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	3.472e^-4	0.794	INTRON Fhos
2L	1635642	2L_1635642_SNP [dm3] 2L_1635642_SNP [dm6]	G	T	3.473e^-4	0.794	INTERGENIC
3R	26276408	3R_26276408_SNP [dm3] 3R_30450686_SNP [dm6]	G	T	3.477e^-4	0.794	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23467932	3R_23467932_SNP [dm3] 3R_27642210_SNP [dm6]	A	G	3.480e^-4	0.794	DOWNSTREAM mir-1001 INTRON tau
X	6455237	X_6455237_SNP [dm3] X_6561204_SNP [dm6]	T	C	3.499e^-4	0.794	SYNONYMOUS_CODING CG34417
2R	3918276	2R_3918276_SNP [dm3] 2R_8030771_SNP [dm6]	T	C	3.499e^-4	0.794	UPSTREAM CR43724 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7970846	3L_7970846_SNP [dm3] 3L_7977746_SNP [dm6]	C	A	3.523e^-4	0.794	UTR_3_PRIME CG8209 DOWNSTREAM CG8038	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8383959	2L_8383959_SNP [dm3] 2L_8383959_SNP [dm6]	A	G	3.523e^-4	0.794	SYNONYMOUS_CODING l_2_k12914 UPSTREAM CG13384 DOWNSTREAM Rcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12361139	3L_12361139_SNP [dm3] 3L_12368039_SNP [dm6]	A	T	3.527e^-4	0.794	DOWNSTREAM Ncc69 INTERGENIC
2L	11413545	2L_11413545_SNP [dm3] 2L_11413545_SNP [dm6]	T	A	3.531e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	21235045	3R_21235045_SNP [dm3] 3R_25409323_SNP [dm6]	C	A	3.537e^-4	0.794	INTRON Fur1
2R	16115445	2R_16115445_SNP [dm3] 2R_20227940_SNP [dm6]	T	A	3.541e^-4	0.794	INTERGENIC
2R	975884	2R_975884_SNP [dm3] 2R_5088379_SNP [dm6]	G	A	3.544e^-4	0.794	INTERGENIC	transposable element FlyBase
3L	15082705	3L_15082705_SNP [dm3] 3L_15089605_SNP [dm6]	A	G	3.552e^-4	0.794	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11154374	2R_11154374_SNP [dm3] 2R_15266869_SNP [dm6]	C	A	3.562e^-4	0.794	SYNONYMOUS_CODING Trpm UTR_3_PRIME Trpm
3R	19129151	3R_19129151_SNP [dm3] 3R_23303429_SNP [dm6]	T	C	3.563e^-4	0.794	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	19217210	3L_19217210_SNP [dm3] 3L_19224110_SNP [dm6]	A	G	3.564e^-4	0.794	INTRON fz2
2L	11841590	2L_11841590_SNP [dm3] 2L_11841590_SNP [dm6]	T	A	3.566e^-4	0.794	UTR_3_PRIME CG44008 UPSTREAM CR43936 DOWNSTREAM CG44008 & 1 other INTRON Pde1c
2L	4910829	2L_4910829_SNP [dm3] 2L_4910829_SNP [dm6]	A	G	3.568e^-4	0.794	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23953031	3R_23953031_SNP [dm3] 3R_28127309_SNP [dm6]	A	C	3.574e^-4	0.794	INTERGENIC
3L	14016643	3L_14016643_SNP [dm3] 3L_14023543_SNP [dm6]	G	A	3.575e^-4	0.794	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	11155004	3L_11155004_SNP [dm3] 3L_11161904_SNP [dm6]	C	T	3.579e^-4	0.794	SYNONYMOUS_CODING CG32082 INTRON CG32082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4911975	2L_4911975_SNP [dm3] 2L_4911975_SNP [dm6]	C	T	3.586e^-4	0.794	INTRON hoe1	TF binding site mE1_TFBS_chinmo
2L	6133190	2L_6133190_SNP [dm3] 2L_6133190_SNP [dm6]	C	A	3.590e^-4	0.794	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14698666	2R_14698666_SNP [dm3] 2R_18811161_SNP [dm6]	C	T	3.590e^-4	0.794	INTRON CG15096
2L	7178208	2L_7178208_SNP [dm3] 2L_7178208_SNP [dm6]	G	C	3.592e^-4	0.794	UPSTREAM CR44613 INTERGENIC
3L	12487091	3L_12487091_SNP [dm3] 3L_12493991_SNP [dm6]	C	T	3.605e^-4	0.794	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19244089	2L_19244089_SNP [dm3] 2L_19244089_SNP [dm6]	T	C	3.608e^-4	0.794	INTERGENIC
3R	19600752	3R_19600752_SNP [dm3] 3R_23775030_SNP [dm6]	A	C	3.612e^-4	0.794	UPSTREAM CG10208 INTRON Nup98-96	TF binding site mE1_TFBS_HSA
X	15171557	X_15171557_SNP [dm3] X_15277524_SNP [dm6]	T	A	3.614e^-4	0.794	INTERGENIC
3R	21234995	3R_21234995_SNP [dm3] 3R_25409273_SNP [dm6]	T	C	3.621e^-4	0.794	INTRON Fur1
3L	15732758	3L_15732758_SNP [dm3] 3L_15739658_SNP [dm6]	C	T	3.622e^-4	0.794	INTERGENIC
X	19724655	X_19724655_SNP [dm3] X_19830622_SNP [dm6]	C	A	3.623e^-4	0.794	UTR_3_PRIME pico DOWNSTREAM pico
3L	7315503	3L_7315503_SNP [dm3] 3L_7322403_SNP [dm6]	A	G	3.625e^-4	0.794	SYNONYMOUS_CODING RhoGEF4	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	615210	2L_615210_SNP [dm3] 2L_615210_SNP [dm6]	G	A	3.626e^-4	0.794	INTERGENIC
2L	11712902	2L_11712902_SNP [dm3] 2L_11712902_SNP [dm6]	G	A	3.628e^-4	0.794	INTERGENIC
2R	10629902	2R_10629902_SNP [dm3] 2R_14742397_SNP [dm6]	A	G	3.629e^-4	0.794	SYNONYMOUS_CODING CG12858
2L	15057524	2L_15057524_SNP [dm3] 2L_15057524_SNP [dm6]	T	A	3.632e^-4	0.794	UTR_5_PRIME ck UPSTREAM CG33679 INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16243460	2L_16243460_SNP [dm3] 2L_16243460_SNP [dm6]	T	C	3.643e^-4	0.794	SYNONYMOUS_CODING CG42818
3R	23152039	3R_23152039_SNP [dm3] 3R_27326317_SNP [dm6]	G	T	3.645e^-4	0.794	INTERGENIC
3L	12487215	3L_12487215_SNP [dm3] 3L_12494115_SNP [dm6]	G	A	3.651e^-4	0.794	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12356544	3L_12356544_SNP [dm3] 3L_12363444_SNP [dm6]	T	A	3.652e^-4	0.794	INTERGENIC
2L	1980224	2L_1980224_SNP [dm3] 2L_1980224_SNP [dm6]	G	T	3.653e^-4	0.794	UPSTREAM CG15362 INTRON CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11873910	2R_11873910_SNP [dm3] 2R_15986405_SNP [dm6]	A	C	3.658e^-4	0.794	INTRON Strn-Mlck
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	3.659e^-4	0.794	INTRON CG17839
2L	3549618	2L_3549618_SNP [dm3] 2L_3549618_SNP [dm6]	T	A	3.664e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	8087530	3R_8087530_SNP [dm3] 3R_12261808_SNP [dm6]	T	C	3.665e^-4	0.794	DOWNSTREAM CG44038 INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	7331882	2L_7331882_SNP [dm3] 2L_7331882_SNP [dm6]	A	G	3.670e^-4	0.794	INTERGENIC
2L	4299087	2L_4299087_SNP [dm3] 2L_4299087_SNP [dm6]	A	G	3.672e^-4	0.794	SYNONYMOUS_CODING tutl
X	16053754	X_16053754_SNP [dm3] X_16159721_SNP [dm6]	C	T	3.676e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5510542	X_5510542_SNP [dm3] X_5616509_SNP [dm6]	G	C	3.677e^-4	0.794	UPSTREAM CG34434 DOWNSTREAM RhoGAP5A INTERGENIC
2R	9192108	2R_9192108_SNP [dm3] 2R_13304603_SNP [dm6]	G	T	3.677e^-4	0.794	INTERGENIC
3R	20831858	3R_20831858_SNP [dm3] 3R_25006136_SNP [dm6]	A	C	3.683e^-4	0.794	INTRON tnc
3R	23108720	3R_23108720_SNP [dm3] 3R_27282998_SNP [dm6]	C	A	3.684e^-4	0.794	UPSTREAM mrt & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7597272	3L_7597272_DEL [dm3] 3L_7604172_DEL [dm6]	GAATCACCGGGG...	G	3.691e^-4	0.794	UPSTREAM CG33275 INTRON CG33275
3L	3443860	3L_3443860_INS [dm3] 3L_3443860_INS [dm6]	T	GA	3.691e^-4	0.794	INTRON eIF5B
3L	3443876	3L_3443876_SNP [dm3] 3L_3443876_SNP [dm6]	A	G	3.691e^-4	0.794	INTRON eIF5B
3L	16447658	3L_16447658_INS [dm3] 3L_16454558_INS [dm6]	T	TT	3.692e^-4	0.794	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18844374	3R_18844374_SNP [dm3] 3R_23018652_SNP [dm6]	C	T	3.706e^-4	0.794	INTERGENIC
X	5253608	X_5253608_SNP [dm3] X_5359575_SNP [dm6]	C	A	3.715e^-4	0.794	INTRON SK
3R	12302367	3R_12302367_SNP [dm3] 3R_16476645_SNP [dm6]	C	A	3.715e^-4	0.794	UPSTREAM Gyc-89Db INTERGENIC
X	9923376	X_9923376_INS [dm3] X_10029343_INS [dm6]	A	ATATA	3.722e^-4	0.794	INTRON Cht6
3R	8068871	3R_8068871_DEL [dm3] 3R_12243149_DEL [dm6]	CC	C	3.736e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19598499	3R_19598499_SNP [dm3] 3R_23772777_SNP [dm6]	C	G	3.746e^-4	0.794	UTR_5_PRIME tst DOWNSTREAM CG10208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
3R	23518045	3R_23518045_SNP [dm3] 3R_27692323_SNP [dm6]	T	C	3.757e^-4	0.794	UTR_3_PRIME CG12880
3L	9504690	3L_9504690_SNP [dm3] 3L_9511590_SNP [dm6]	T	C	3.769e^-4	0.794	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12199268	3L_12199268_SNP [dm3] 3L_12206168_SNP [dm6]	G	A	3.771e^-4	0.794	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10421421	2R_10421421_SNP [dm3] 2R_14533916_SNP [dm6]	T	C	3.788e^-4	0.794	INTRON ttv
2R	12634821	2R_12634821_SNP [dm3] 2R_16747316_SNP [dm6]	A	G	3.798e^-4	0.794	UPSTREAM CG15617 DOWNSTREAM Acp53C14a INTERGENIC
2R	2599149	2R_2599149_SNP [dm3] 2R_6711644_SNP [dm6]	A	C	3.799e^-4	0.794	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	2126768	X_2126768_SNP [dm3] X_2232735_SNP [dm6]	C	G	3.801e^-4	0.794	SYNONYMOUS_CODING pcx	TF binding site mE1_TFBS_chinmo
2L	7366672	2L_7366672_SNP [dm3] 2L_7366672_SNP [dm6]	T	C	3.802e^-4	0.794	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17549116	2L_17549116_SNP [dm3] 2L_17549116_SNP [dm6]	T	C	3.804e^-4	0.794	INTERGENIC
3L	5123451	3L_5123451_SNP [dm3] 3L_5130351_SNP [dm6]	A	T	3.806e^-4	0.794	DOWNSTREAM CG4597 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13462837	2R_13462837_INS [dm3] 2R_17575332_INS [dm6]	TCTT	CAAGGAAA	3.806e^-4	0.794	UTR_3_PRIME Dcr-2 DOWNSTREAM Rab4	TF binding site mE1_TFBS_HSA
2L	17993126	2L_17993126_INS [dm3] 2L_17993126_INS [dm6]	T	TT	3.835e^-4	0.794	DOWNSTREAM CR44767 INTERGENIC
2L	5907508	2L_5907508_SNP [dm3] 2L_5907508_SNP [dm6]	A	C	3.841e^-4	0.794	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5938560	X_5938560_SNP [dm3] X_6044527_SNP [dm6]	A	T	3.847e^-4	0.794	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12215828	X_12215828_MNP [dm3] X_12321795_MNP [dm6]	TAATGC	GGCATA	3.852e^-4	0.794	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16987339	3R_16987339_SNP [dm3] 3R_21161617_SNP [dm6]	T	G	3.855e^-4	0.794	UPSTREAM CG10824 INTRON SNF4Agamma
2R	5003478	2R_5003478_SNP [dm3] 2R_9115973_SNP [dm6]	C	G	3.857e^-4	0.794	UTR_3_PRIME Phax UPSTREAM Su_var_2-10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	3443867	3L_3443867_SNP [dm3] 3L_3443867_SNP [dm6]	C	T	3.862e^-4	0.794	INTRON eIF5B
X	5451770	X_5451770_INS [dm3] X_5557737_INS [dm6]	A	ACTCT	3.868e^-4	0.794	INTRON Vsx2
X	2487036	X_2487036_SNP [dm3] X_2593003_SNP [dm6]	A	G	3.869e^-4	0.794	UPSTREAM egh INTRON egh
3R	23467876	3R_23467876_SNP [dm3] 3R_27642154_SNP [dm6]	T	A	3.883e^-4	0.794	DOWNSTREAM mir-1001 INTRON tau
2L	7008495	2L_7008495_SNP [dm3] 2L_7008495_SNP [dm6]	G	A	3.884e^-4	0.794	START_GAINED uif UTR_5_PRIME uif INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	23468428	3R_23468428_SNP [dm3] 3R_27642706_SNP [dm6]	T	C	3.885e^-4	0.794	UPSTREAM mir-1001 INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5774987	2L_5774987_SNP [dm3] 2L_5774987_SNP [dm6]	G	A	3.891e^-4	0.794	INTRON CG9171	TF binding site mE1_TFBS_cad
2L	16290218	2L_16290218_SNP [dm3] 2L_16290218_SNP [dm6]	A	C	3.891e^-4	0.794	INTRON pkaap
2L	4931300	2L_4931300_SNP [dm3] 2L_4931300_SNP [dm6]	C	T	3.893e^-4	0.794	INTRON hoe1
2L	1757100	2L_1757100_SNP [dm3] 2L_1757100_SNP [dm6]	C	T	3.894e^-4	0.794	UPSTREAM Gr22f INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	12556065	2L_12556065_SNP [dm3] 2L_12556065_SNP [dm6]	G	T	3.899e^-4	0.794	INTERGENIC
3R	2969690	3R_2969690_SNP [dm3] 3R_7143968_SNP [dm6]	G	C	3.902e^-4	0.794	NON_SYNONYMOUS_CODING CG14610 UPSTREAM CG2656 EXON CR42738
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	3.919e^-4	0.794	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18432846	2L_18432846_SNP [dm3] 2L_18432846_SNP [dm6]	A	G	3.924e^-4	0.794	UPSTREAM CR44488 INTERGENIC
3R	21224044	3R_21224044_SNP [dm3] 3R_25398322_SNP [dm6]	C	T	3.925e^-4	0.794	SYNONYMOUS_CODING Muc96D INTRON Fur1	TF binding site mE1_TFBS_HSA
3L	3358129	3L_3358129_SNP [dm3] 3L_3358129_SNP [dm6]	G	A	3.937e^-4	0.794	SPLICE_SITE_REGION kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	23386876	3R_23386876_SNP [dm3] 3R_27561154_SNP [dm6]	C	T	3.939e^-4	0.794	UPSTREAM snmRNA:157 DOWNSTREAM wdb INTRON CG5646
X	20560891	X_20560891_SNP [dm3] X_20689864_SNP [dm6]	G	C	3.941e^-4	0.794	UPSTREAM run DOWNSTREAM CR45610 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	10001303	2R_10001303_SNP [dm3] 2R_14113798_SNP [dm6]	G	C	3.954e^-4	0.794	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	17013371	3L_17013371_SNP [dm3] 3L_17020271_SNP [dm6]	C	T	3.958e^-4	0.794	DOWNSTREAM CG6652 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	3361917	3L_3361917_SNP [dm3] 3L_3361917_SNP [dm6]	C	T	3.961e^-4	0.794	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	15426430	3L_15426430_SNP [dm3] 3L_15433330_SNP [dm6]	C	T	3.970e^-4	0.794	INTERGENIC
X	12215818	X_12215818_SNP [dm3] X_12321785_SNP [dm6]	T	C	3.988e^-4	0.794	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5131527	2L_5131527_SNP [dm3] 2L_5131527_SNP [dm6]	G	A	3.996e^-4	0.794	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15370163	2L_15370163_SNP [dm3] 2L_15370163_SNP [dm6]	G	A	3.997e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9631837	2R_9631837_DEL [dm3] 2R_13744332_DEL [dm6]	CCGC	C	4.001e^-4	0.794	INTRON fas
2R	19319637	2R_19319637_SNP [dm3] 2R_23432114_SNP [dm6]	G	A	4.009e^-4	0.794	UPSTREAM CG9815 INTRON CG9815
2R	17759033	2R_17759033_SNP [dm3] 2R_21871528_SNP [dm6]	T	G	4.016e^-4	0.794	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	4.023e^-4	0.794	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	13547024	3L_13547024_SNP [dm3] 3L_13553924_SNP [dm6]	C	T	4.033e^-4	0.794	INTRON bru-3
3L	8156909	3L_8156909_SNP [dm3] 3L_8163809_SNP [dm6]	G	A	4.036e^-4	0.794	INTRON CG13675
2L	4649585	2L_4649585_SNP [dm3] 2L_4649585_SNP [dm6]	T	A	4.044e^-4	0.794	INTERGENIC
3R	23774807	3R_23774807_SNP [dm3] 3R_27949085_SNP [dm6]	C	T	4.049e^-4	0.794	INTRON Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15425336	3L_15425336_SNP [dm3] 3L_15432236_SNP [dm6]	C	A	4.050e^-4	0.794	INTERGENIC
2R	4074315	2R_4074315_SNP [dm3] 2R_8186810_SNP [dm6]	T	A	4.051e^-4	0.794	INTRON LRP1
2R	8514502	2R_8514502_SNP [dm3] 2R_12626997_SNP [dm6]	G	T	4.069e^-4	0.794	SYNONYMOUS_CODING CG17760
2R	16301676	2R_16301676_SNP [dm3] 2R_20414171_SNP [dm6]	T	A	4.069e^-4	0.794	INTERGENIC
3R	13820266	3R_13820266_SNP [dm3] 3R_17994544_SNP [dm6]	C	T	4.072e^-4	0.794	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11712906	2L_11712906_SNP [dm3] 2L_11712906_SNP [dm6]	T	C	4.078e^-4	0.794	INTERGENIC
2R	4023298	2R_4023298_SNP [dm3] 2R_8135793_SNP [dm6]	A	T	4.085e^-4	0.794	UPSTREAM Obp44a INTERGENIC
2R	10726501	2R_10726501_SNP [dm3] 2R_14838996_SNP [dm6]	T	A	4.085e^-4	0.794	INTERGENIC
3L	12950309	3L_12950309_SNP [dm3] 3L_12957209_SNP [dm6]	G	A	4.090e^-4	0.794	INTERGENIC
X	5007938	X_5007938_SNP [dm3] X_5113905_SNP [dm6]	A	T	4.091e^-4	0.794	INTRON rg & 1 other
2L	9011439	2L_9011439_SNP [dm3] 2L_9011439_SNP [dm6]	T	C	4.093e^-4	0.794	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3R	20820522	3R_20820522_SNP [dm3] 3R_24994800_SNP [dm6]	T	A	4.094e^-4	0.794	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8743910	3L_8743910_SNP [dm3] 3L_8750810_SNP [dm6]	C	T	4.096e^-4	0.794	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3211532	2L_3211532_INS [dm3] 2L_3211532_INS [dm6]	T	TT	4.099e^-4	0.794	DOWNSTREAM CR45336 INTERGENIC
3R	22502219	3R_22502219_SNP [dm3] 3R_26676497_SNP [dm6]	C	T	4.103e^-4	0.794	INTRON beat-VII	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	22998385	3L_22998385_SNP [dm3] 3L_23005285_SNP [dm6]	T	A	4.109e^-4	0.794	INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1205260	3L_1205260_SNP [dm3] 3L_1205260_SNP [dm6]	A	G	4.109e^-4	0.794	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
3R	12303986	3R_12303986_SNP [dm3] 3R_16478264_SNP [dm6]	T	C	4.120e^-4	0.794	INTRON Gyc-89Db	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8291070	2L_8291070_SNP [dm3] 2L_8291070_SNP [dm6]	T	A	4.126e^-4	0.794	DOWNSTREAM tRNA:K5:29A INTRON Btk29A
2L	6777271	2L_6777271_SNP [dm3] 2L_6777271_SNP [dm6]	C	T	4.139e^-4	0.794	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20815204	3R_20815204_SNP [dm3] 3R_24989482_SNP [dm6]	G	T	4.141e^-4	0.794	INTRON tnc
X	15531557	X_15531557_SNP [dm3] X_15637524_SNP [dm6]	C	T	4.142e^-4	0.794	DOWNSTREAM CR44423 INTERGENIC
3R	20627839	3R_20627839_SNP [dm3] 3R_24802117_SNP [dm6]	C	T	4.145e^-4	0.794	SYNONYMOUS_CODING polybromo	TF binding site mE1_TFBS_sens
3L	15730719	3L_15730719_DEL [dm3] 3L_15737619_DEL [dm6]	GTCACTTCCTGAC...	G	4.145e^-4	0.794	INTERGENIC
X	2485607	X_2485607_SNP [dm3] X_2591574_SNP [dm6]	G	C	4.146e^-4	0.794	UPSTREAM egh INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12879987	2L_12879987_SNP [dm3] 2L_12879987_SNP [dm6]	G	A	4.151e^-4	0.794	INTERGENIC
2R	4047264	2R_4047264_SNP [dm3] 2R_8159759_SNP [dm6]	T	C	4.153e^-4	0.794	SYNONYMOUS_CODING CG8708
2R	8283300	2R_8283300_SNP [dm3] 2R_12395795_SNP [dm6]	G	T	4.155e^-4	0.794	SYNONYMOUS_CODING CG30048 START_GAINED CG30048 UTR_5_PRIME CG30048 DOWNSTREAM Or49a
2R	17115437	2R_17115437_SNP [dm3] 2R_21227932_SNP [dm6]	T	A	4.165e^-4	0.794	INTRON ASPP
2L	6801168	2L_6801168_SNP [dm3] 2L_6801168_SNP [dm6]	C	A	4.166e^-4	0.794	UPSTREAM CG17376 DOWNSTREAM CG17377 INTERGENIC	regulatory region REDfly_CRMs
3R	13820269	3R_13820269_SNP [dm3] 3R_17994547_SNP [dm6]	T	C	4.169e^-4	0.794	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8205303	2L_8205303_SNP [dm3] 2L_8205303_SNP [dm6]	G	A	4.170e^-4	0.794	UPSTREAM SLC5A11 & 1 other DOWNSTREAM CR44120 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12353364	X_12353364_SNP [dm3] X_12459331_SNP [dm6]	T	A	4.174e^-4	0.794	DOWNSTREAM Rab40 INTERGENIC
2L	6832239	2L_6832239_SNP [dm3] 2L_6832239_SNP [dm6]	A	G	4.191e^-4	0.794	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2129794	X_2129794_SNP [dm3] X_2235761_SNP [dm6]	T	A	4.194e^-4	0.794	SYNONYMOUS_CODING pcx	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	18214541	2L_18214541_SNP [dm3] 2L_18214541_SNP [dm6]	T	C	4.194e^-4	0.794	INTRON CG42750
2L	1645556	2L_1645556_SNP [dm3] 2L_1645556_SNP [dm6]	C	A	4.194e^-4	0.794	INTERGENIC
2L	3283189	2L_3283189_SNP [dm3] 2L_3283189_SNP [dm6]	G	T	4.210e^-4	0.794	INTERGENIC
2L	3283190	2L_3283190_SNP [dm3] 2L_3283190_SNP [dm6]	A	G	4.210e^-4	0.794	INTERGENIC
2R	976823	2R_976823_SNP [dm3] 2R_5089318_SNP [dm6]	A	T	4.217e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	1739812	X_1739812_SNP [dm3] X_1845779_SNP [dm6]	G	A	4.226e^-4	0.794	INTRON CG42666
X	1739813	X_1739813_SNP [dm3] X_1845780_SNP [dm6]	A	C	4.226e^-4	0.794	INTRON CG42666
3L	6587579	3L_6587579_SNP [dm3] 3L_6594479_SNP [dm6]	T	C	4.226e^-4	0.794	DOWNSTREAM CG18769 INTRON ndl
3R	23521009	3R_23521009_SNP [dm3] 3R_27695287_SNP [dm6]	C	T	4.228e^-4	0.794	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 1 other
2L	15521086	2L_15521086_SNP [dm3] 2L_15521086_SNP [dm6]	A	C	4.234e^-4	0.794	UPSTREAM CR43761 INTERGENIC
2R	3441055	2R_3441055_SNP [dm3] 2R_7553550_SNP [dm6]	G	T	4.248e^-4	0.794	INTRON Corin
3R	10550391	3R_10550391_SNP [dm3] 3R_14724669_SNP [dm6]	C	T	4.255e^-4	0.794	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2876807	2L_2876807_SNP [dm3] 2L_2876807_SNP [dm6]	C	T	4.260e^-4	0.794	UTR_3_PRIME CG8814 DOWNSTREAM Prx6005
3R	26090926	3R_26090926_SNP [dm3] 3R_30265204_SNP [dm6]	T	C	4.267e^-4	0.794	INTERGENIC	silencer mE1_HDAC_PRE
2L	14314156	2L_14314156_SNP [dm3] 2L_14314156_SNP [dm6]	T	C	4.269e^-4	0.794	INTRON wb	TF binding site mE1_TFBS_cad
2R	9196035	2R_9196035_INS [dm3] 2R_13308530_INS [dm6]	T	TCAGT	4.270e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	761220	3L_761220_SNP [dm3] 3L_761220_SNP [dm6]	A	G	4.271e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	16205219	3L_16205219_SNP [dm3] 3L_16212119_SNP [dm6]	G	T	4.272e^-4	0.794	DOWNSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13389364	X_13389364_SNP [dm3] X_13495331_SNP [dm6]	G	T	4.280e^-4	0.794	INTRON Neto
3R	25976530	3R_25976530_INS [dm3] 3R_30150808_INS [dm6]	A	AA	4.291e^-4	0.794	INTERGENIC
2L	8386398	2L_8386398_SNP [dm3] 2L_8386398_SNP [dm6]	C	T	4.295e^-4	0.794	INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5451915	X_5451915_SNP [dm3] X_5557882_SNP [dm6]	A	G	4.295e^-4	0.794	INTRON Vsx2
3L	1205262	3L_1205262_SNP [dm3] 3L_1205262_SNP [dm6]	C	G	4.296e^-4	0.794	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
3R	10919999	3R_10919999_SNP [dm3] 3R_15094277_SNP [dm6]	A	T	4.298e^-4	0.794	INTRON CG6966	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19827699	3R_19827699_SNP [dm3] 3R_24001977_SNP [dm6]	T	C	4.302e^-4	0.794	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3271000	3R_3271000_SNP [dm3] 3R_7445278_SNP [dm6]	T	G	4.305e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22768912	3R_22768912_SNP [dm3] 3R_26943190_SNP [dm6]	C	A	4.307e^-4	0.794	NON_SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2L	8010772	2L_8010772_SNP [dm3] 2L_8010772_SNP [dm6]	T	C	4.308e^-4	0.794	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	2827481	X_2827481_SNP [dm3] X_2933448_SNP [dm6]	A	T	4.316e^-4	0.794	DOWNSTREAM CG32793 INTRON kirre
X	2487025	X_2487025_SNP [dm3] X_2592992_SNP [dm6]	C	A	4.324e^-4	0.794	UPSTREAM egh INTRON egh
3R	20628208	3R_20628208_SNP [dm3] 3R_24802486_SNP [dm6]	G	A	4.325e^-4	0.794	SYNONYMOUS_CODING polybromo
3R	20628283	3R_20628283_SNP [dm3] 3R_24802561_SNP [dm6]	T	C	4.325e^-4	0.794	INTRON polybromo
3R	20628285	3R_20628285_SNP [dm3] 3R_24802563_SNP [dm6]	T	C	4.325e^-4	0.794	SPLICE_SITE_REGION polybromo INTRON polybromo
3R	20628273	3R_20628273_SNP [dm3] 3R_24802551_SNP [dm6]	T	A	4.330e^-4	0.794	INTRON polybromo
X	14774565	X_14774565_SNP [dm3] X_14880532_SNP [dm6]	T	C	4.334e^-4	0.794	INTRON Flo2 & 2 others
3L	12015442	3L_12015442_SNP [dm3] 3L_12022342_SNP [dm6]	G	A	4.336e^-4	0.794	INTRON rols
2L	9657519	2L_9657519_SNP [dm3] 2L_9657519_SNP [dm6]	A	C	4.336e^-4	0.794	DOWNSTREAM CG33299 INTERGENIC
3R	6175866	3R_6175866_SNP [dm3] 3R_10350144_SNP [dm6]	C	A	4.338e^-4	0.794	UPSTREAM jumu DOWNSTREAM CG31406 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19503905	2R_19503905_SNP [dm3] 2R_23616382_SNP [dm6]	C	T	4.341e^-4	0.794	INTRON CG17664
X	7758500	X_7758500_SNP [dm3] X_7864467_SNP [dm6]	T	C	4.345e^-4	0.794	DOWNSTREAM Ir7b INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.134e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.000565

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.6744	0.0079
In_3R_K	13.3215	0.0013

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2118 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	6613025	3R_6613025_SNP [dm3] 3R_10787303_SNP [dm6]	T	C	1.704e^-6	0.619	SYNONYMOUS_CODING Art1 DOWNSTREAM Rbp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	16147596	3L_16147596_SNP [dm3] 3L_16154496_SNP [dm6]	G	A	1.736e^-6	0.619	INTRON CG5151
2R	18533201	2R_18533201_SNP [dm3] 2R_22645696_SNP [dm6]	A	T	2.388e^-6	0.619	DOWNSTREAM CG30195 INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6604624	3R_6604624_SNP [dm3] 3R_10778902_SNP [dm6]	T	A	3.181e^-6	0.619	UPSTREAM Desi INTERGENIC
3R	8896341	3R_8896341_SNP [dm3] 3R_13070619_SNP [dm6]	A	T	3.356e^-6	0.619	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	3.381e^-6	0.619	INTERGENIC
2L	11964047	2L_11964047_SNP [dm3] 2L_11964047_SNP [dm6]	A	T	3.541e^-6	0.619	INTRON CR43314
3R	11689824	3R_11689824_MNP [dm3] 3R_15864102_MNP [dm6]	GGGAA	TTATT	3.759e^-6	0.619	INTRON CG31183
3R	11689817	3R_11689817_SNP [dm3] 3R_15864095_SNP [dm6]	C	T	4.530e^-6	0.619	INTRON CG31183
3R	11689820	3R_11689820_MNP [dm3] 3R_15864098_MNP [dm6]	CCA	GAT	4.530e^-6	0.619	INTRON CG31183
2R	6079855	2R_6079855_DEL [dm3] 2R_10192350_DEL [dm6]	GCGGAG	G	4.709e^-6	0.619	UTR_5_PRIME KCNQ	TF binding site mE1_TFBS_inv
3R	11689804	3R_11689804_SNP [dm3] 3R_15864082_SNP [dm6]	T	C	5.005e^-6	0.619	INTRON CG31183
3R	24821956	3R_24821956_SNP [dm3] 3R_28996234_SNP [dm6]	C	T	5.007e^-6	0.619	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6604304	3R_6604304_INS [dm3] 3R_10778582_INS [dm6]	A	ATTCTTCAA	5.740e^-6	0.619	UPSTREAM Desi INTERGENIC
2L	1628272	2L_1628272_SNP [dm3] 2L_1628272_SNP [dm6]	A	T	6.292e^-6	0.619	INTERGENIC
3R	8645116	3R_8645116_DEL [dm3] 3R_12819394_DEL [dm6]	AAC	A	6.704e^-6	0.619	INTERGENIC
3R	8645122	3R_8645122_INS [dm3] 3R_12819400_INS [dm6]	G	AT	6.704e^-6	0.619	INTERGENIC
3R	11689837	3R_11689837_SNP [dm3] 3R_15864115_SNP [dm6]	G	C	6.824e^-6	0.619	INTRON CG31183
X	3338437	X_3338437_SNP [dm3] X_3444404_SNP [dm6]	A	G	8.057e^-6	0.619	INTRON CR44999 & 1 other
3R	8743004	3R_8743004_SNP [dm3] 3R_12917282_SNP [dm6]	T	A	8.059e^-6	0.619	INTRON beat-Vb
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	8.299e^-6	0.619	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24821101	3R_24821101_SNP [dm3] 3R_28995379_SNP [dm6]	A	G	8.812e^-6	0.619	SPLICE_SITE_REGION wat INTRON wat
3R	11689831	3R_11689831_INS [dm3] 3R_15864109_INS [dm6]	T	TGA	9.241e^-6	0.619	INTRON CG31183
3R	11689833	3R_11689833_SNP [dm3] 3R_15864111_SNP [dm6]	T	G	9.241e^-6	0.619	INTRON CG31183
3R	11689838	3R_11689838_SNP [dm3] 3R_15864116_SNP [dm6]	G	C	9.241e^-6	0.619	INTRON CG31183
3R	11689842	3R_11689842_INS [dm3] 3R_15864120_INS [dm6]	T	GGA	9.241e^-6	0.619	INTRON CG31183
3R	11689845	3R_11689845_MNP [dm3] 3R_15864123_MNP [dm6]	TGC	ACG	9.241e^-6	0.619	INTRON CG31183
3R	11689849	3R_11689849_SNP [dm3] 3R_15864127_SNP [dm6]	A	T	9.241e^-6	0.619	INTRON CG31183
3R	8663103	3R_8663103_SNP [dm3] 3R_12837381_SNP [dm6]	G	A	9.915e^-6	0.638	INTERGENIC
3R	11689818	3R_11689818_SNP [dm3] 3R_15864096_SNP [dm6]	T	A	1.044e^-5	0.638	INTRON CG31183
3R	8889190	3R_8889190_SNP [dm3] 3R_13063468_SNP [dm6]	T	G	1.055e^-5	0.638	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	3904951	2L_3904951_SNP [dm3] 2L_3904951_SNP [dm6]	T	C	1.246e^-5	0.725	UTR_3_PRIME fred DOWNSTREAM fred
2R	20692821	2R_20692821_SNP [dm3] 2R_24805298_SNP [dm6]	A	G	1.275e^-5	0.725	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_sens
3R	13302076	3R_13302076_SNP [dm3] 3R_17476354_SNP [dm6]	C	A	1.521e^-5	0.815	INTRON Dscam3
2R	9412868	2R_9412868_SNP [dm3] 2R_13525363_SNP [dm6]	C	T	1.595e^-5	0.815	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17156658	X_17156658_INS [dm3] X_17262625_INS [dm6]	C	CC	1.692e^-5	0.815	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1211535	2R_1211535_SNP [dm3] 2R_5324030_SNP [dm6]	A	T	1.736e^-5	0.815	INTRON sxc	transposable element FlyBase
3R	8645143	3R_8645143_SNP [dm3] 3R_12819421_SNP [dm6]	C	T	1.766e^-5	0.815	INTERGENIC
3R	8889155	3R_8889155_SNP [dm3] 3R_13063433_SNP [dm6]	G	T	1.793e^-5	0.815	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	8645217	3R_8645217_SNP [dm3] 3R_12819495_SNP [dm6]	G	T	1.967e^-5	0.815	INTERGENIC
2R	9937930	2R_9937930_SNP [dm3] 2R_14050425_SNP [dm6]	T	A	2.008e^-5	0.815	INTRON mam
2R	10947811	2R_10947811_SNP [dm3] 2R_15060306_SNP [dm6]	T	C	2.013e^-5	0.815	INTERGENIC
3R	8663134	3R_8663134_SNP [dm3] 3R_12837412_SNP [dm6]	G	C	2.038e^-5	0.815	INTERGENIC
3R	11211349	3R_11211349_SNP [dm3] 3R_15385627_SNP [dm6]	T	A	2.093e^-5	0.815	SPLICE_SITE_REGION Rbp INTRON Rbp	TF binding site mE1_TFBS_chinmo
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	2.112e^-5	0.815	INTERGENIC
2R	14902502	2R_14902502_SNP [dm3] 2R_19014997_SNP [dm6]	C	G	2.122e^-5	0.815	INTERGENIC
2R	1297884	2R_1297884_SNP [dm3] 2R_5410379_SNP [dm6]	G	T	2.123e^-5	0.815	INTERGENIC
3R	14058642	3R_14058642_SNP [dm3] 3R_18232920_SNP [dm6]	T	A	2.186e^-5	0.815	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	8820642	3R_8820642_SNP [dm3] 3R_12994920_SNP [dm6]	T	A	2.261e^-5	0.815	UPSTREAM CG7488 INTRON yellow-f2	TF binding site mE1_TFBS_sens
3R	11211360	3R_11211360_SNP [dm3] 3R_15385638_SNP [dm6]	T	C	2.304e^-5	0.815	INTRON Rbp	TF binding site mE1_TFBS_chinmo
2L	3903246	2L_3903246_SNP [dm3] 2L_3903246_SNP [dm6]	G	T	2.310e^-5	0.815	UTR_3_PRIME fred UPSTREAM capu
2R	15394335	2R_15394335_SNP [dm3] 2R_19506830_SNP [dm6]	C	A	2.363e^-5	0.815	UPSTREAM tRNA:H:56E INTERGENIC
3R	8743117	3R_8743117_SNP [dm3] 3R_12917395_SNP [dm6]	C	T	2.393e^-5	0.815	INTRON beat-Vb
3L	17237157	3L_17237157_SNP [dm3] 3L_17244057_SNP [dm6]	G	A	2.453e^-5	0.815	INTRON CG7707	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11911230	2R_11911230_SNP [dm3] 2R_16023725_SNP [dm6]	T	A	2.458e^-5	0.815	DOWNSTREAM casp INTRON CG8399
3R	8743227	3R_8743227_SNP [dm3] 3R_12917505_SNP [dm6]	G	T	2.550e^-5	0.815	INTRON beat-Vb
3R	8889122	3R_8889122_SNP [dm3] 3R_13063400_SNP [dm6]	C	A	2.600e^-5	0.815	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	11191551	2L_11191551_DEL [dm3] 2L_11191551_DEL [dm6]	AACAAAAGAAA...	A	2.644e^-5	0.815	INTRON Ca-beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8685436	3R_8685436_SNP [dm3] 3R_12859714_SNP [dm6]	A	G	2.654e^-5	0.815	UPSTREAM CG10126 INTERGENIC
2R	16826482	2R_16826482_SNP [dm3] 2R_20938977_SNP [dm6]	C	T	2.723e^-5	0.815	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2R	1368004	2R_1368004_SNP [dm3] 2R_5480499_SNP [dm6]	G	C	2.756e^-5	0.815	INTRON CG30440
3L	7185568	3L_7185568_SNP [dm3] 3L_7192468_SNP [dm6]	T	C	2.799e^-5	0.815	INTERGENIC
3R	20887214	3R_20887214_SNP [dm3] 3R_25061492_SNP [dm6]	C	A	2.804e^-5	0.815	SYNONYMOUS_CODING Unc-13-4B
2L	3885871	2L_3885871_SNP [dm3] 2L_3885871_SNP [dm6]	T	C	2.843e^-5	0.815	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1628224	2L_1628224_SNP [dm3] 2L_1628224_SNP [dm6]	C	T	2.855e^-5	0.815	INTERGENIC
2R	4150488	2R_4150488_SNP [dm3] 2R_8262983_SNP [dm6]	T	C	2.870e^-5	0.815	NON_SYNONYMOUS_CODING CG12126 DOWNSTREAM CG30376
2L	15940976	2L_15940976_SNP [dm3] 2L_15940976_SNP [dm6]	G	A	2.985e^-5	0.822	UPSTREAM CG12448 INTRON beat-Ib
2R	1208366	2R_1208366_SNP [dm3] 2R_5320861_SNP [dm6]	C	A	2.988e^-5	0.822	INTRON sxc
2R	17405949	2R_17405949_SNP [dm3] 2R_21518444_SNP [dm6]	C	T	3.024e^-5	0.822	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
X	13216229	X_13216229_SNP [dm3] X_13322196_SNP [dm6]	A	C	3.069e^-5	0.822	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13841512	2L_13841512_SNP [dm3] 2L_13841512_SNP [dm6]	T	G	3.153e^-5	0.822	UTR_5_PRIME CG33307 INTRON CenG1A
3R	8743212	3R_8743212_INS [dm3] 3R_12917490_INS [dm6]	T	TCT	3.184e^-5	0.822	INTRON beat-Vb
2R	8904084	2R_8904084_SNP [dm3] 2R_13016579_SNP [dm6]	T	A	3.233e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8704205	3R_8704205_SNP [dm3] 3R_12878483_SNP [dm6]	T	C	3.274e^-5	0.822	INTERGENIC
2R	12629639	2R_12629639_SNP [dm3] 2R_16742134_SNP [dm6]	T	C	3.303e^-5	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	3.329e^-5	0.822	UPSTREAM ppk27 INTRON CG32264
3R	8743308	3R_8743308_SNP [dm3] 3R_12917586_SNP [dm6]	T	G	3.408e^-5	0.83	INTRON beat-Vb
2L	3461450	2L_3461450_SNP [dm3] 2L_3461450_SNP [dm6]	C	T	3.457e^-5	0.831	SYNONYMOUS_CODING CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6771302	2L_6771302_SNP [dm3] 2L_6771302_SNP [dm6]	G	C	3.527e^-5	0.837	UPSTREAM CG11321 INTRON CG11321
3R	8743381	3R_8743381_SNP [dm3] 3R_12917659_SNP [dm6]	A	T	3.617e^-5	0.839	INTRON beat-Vb
3R	8743570	3R_8743570_SNP [dm3] 3R_12917848_SNP [dm6]	G	C	3.625e^-5	0.839	INTRON beat-Vb
2R	1208448	2R_1208448_SNP [dm3] 2R_5320943_SNP [dm6]	A	G	3.705e^-5	0.839	INTRON sxc	transposable element FlyBase
2L	3312102	2L_3312102_SNP [dm3] 2L_3312102_SNP [dm6]	T	G	3.718e^-5	0.839	DOWNSTREAM CG15406 INTRON CG3277
2R	16379331	2R_16379331_SNP [dm3] 2R_20491826_SNP [dm6]	A	G	3.756e^-5	0.839	EXON CR44643
X	3338524	X_3338524_SNP [dm3] X_3444491_SNP [dm6]	C	T	3.848e^-5	0.849	INTRON CR44999 & 1 other
2R	10004002	2R_10004002_SNP [dm3] 2R_14116497_SNP [dm6]	A	T	4.021e^-5	0.862	INTRON Prosap
3R	8684975	3R_8684975_SNP [dm3] 3R_12859253_SNP [dm6]	C	T	4.162e^-5	0.862	UPSTREAM CG10126 INTERGENIC
2L	12912445	2L_12912445_SNP [dm3] 2L_12912445_SNP [dm6]	G	T	4.215e^-5	0.862	UPSTREAM ACXC INTERGENIC
3R	8889153	3R_8889153_SNP [dm3] 3R_13063431_SNP [dm6]	A	G	4.219e^-5	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	12629611	2R_12629611_SNP [dm3] 2R_16742106_SNP [dm6]	C	G	4.219e^-5	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8889170	3R_8889170_SNP [dm3] 3R_13063448_SNP [dm6]	A	G	4.309e^-5	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	10697928	3L_10697928_SNP [dm3] 3L_10704828_SNP [dm6]	G	A	4.492e^-5	0.862	INTERGENIC
3L	2653204	3L_2653204_SNP [dm3] 3L_2653204_SNP [dm6]	G	A	4.493e^-5	0.862	UTR_5_PRIME CG42304 UTR_3_PRIME Snup UPSTREAM CG42304
3R	11211357	3R_11211357_SNP [dm3] 3R_15385635_SNP [dm6]	T	A	4.644e^-5	0.862	INTRON Rbp	TF binding site mE1_TFBS_chinmo
2R	18620679	2R_18620679_SNP [dm3] 2R_22733174_SNP [dm6]	G	T	4.654e^-5	0.862	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11244320	3L_11244320_SNP [dm3] 3L_11251220_SNP [dm6]	T	G	4.679e^-5	0.862	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	4694633	2L_4694633_SNP [dm3] 2L_4694633_SNP [dm6]	G	A	4.713e^-5	0.862	UPSTREAM CG34351 INTERGENIC
X	18567307	X_18567307_SNP [dm3] X_18673274_SNP [dm6]	G	T	4.799e^-5	0.862	INTERGENIC
2L	3329859	2L_3329859_SNP [dm3] 2L_3329859_SNP [dm6]	A	G	4.868e^-5	0.862	DOWNSTREAM CG33282 INTERGENIC
3R	8889123	3R_8889123_SNP [dm3] 3R_13063401_SNP [dm6]	A	T	4.931e^-5	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
X	15330472	X_15330472_SNP [dm3] X_15436439_SNP [dm6]	A	G	4.964e^-5	0.862	INTRON Cngl
2L	9690676	2L_9690676_SNP [dm3] 2L_9690676_SNP [dm6]	T	C	4.984e^-5	0.862	INTRON Pka-C1
2R	497912	2R_497912_SNP [dm3] 2R_4610407_SNP [dm6]	G	T	4.997e^-5	0.862	DOWNSTREAM p120ctn INTERGENIC	transposable element FlyBase
2R	12568552	2R_12568552_SNP [dm3] 2R_16681047_SNP [dm6]	A	C	4.999e^-5	0.862	SYNONYMOUS_CODING CG30463
X	5950772	X_5950772_SNP [dm3] X_6056739_SNP [dm6]	A	C	5.006e^-5	0.862	INTRON CG5921	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6357773	3R_6357773_SNP [dm3] 3R_10532051_SNP [dm6]	T	G	5.107e^-5	0.862	INTRON hth
2R	12729383	2R_12729383_INS [dm3] 2R_16841878_INS [dm6]	T	TTTT	5.296e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4638146	3R_4638146_SNP [dm3] 3R_8812424_SNP [dm6]	C	A	5.345e^-5	0.862	INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5739392	X_5739392_SNP [dm3] X_5845359_SNP [dm6]	T	A	5.348e^-5	0.862	NON_SYNONYMOUS_CODING CG12729
2L	9670751	2L_9670751_DEL [dm3] 2L_9670751_DEL [dm6]	ATTTTAAAA	A	5.392e^-5	0.862	INTRON CR44150
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	5.549e^-5	0.862	UTR_3_PRIME CG5278
3L	2705357	3L_2705357_DEL [dm3] 3L_2705357_DEL [dm6]	AAACAAACA	A	5.577e^-5	0.862	INTRON Fife
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	5.596e^-5	0.862	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	10516879	2L_10516879_SNP [dm3] 2L_10516879_SNP [dm6]	C	T	5.650e^-5	0.862	UTR_5_PRIME Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	16510492	2R_16510492_SNP [dm3] 2R_20622987_SNP [dm6]	A	T	5.682e^-5	0.862	SYNONYMOUS_CODING CG11180 UPSTREAM CG16742	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11142447	2L_11142447_SNP [dm3] 2L_11142447_SNP [dm6]	G	A	5.699e^-5	0.862	INTRON Gyc32E
3L	7103256	3L_7103256_SNP [dm3] 3L_7110156_SNP [dm6]	G	C	5.844e^-5	0.862	INTRON form3
2R	3395751	2R_3395751_SNP [dm3] 2R_7508246_SNP [dm6]	T	C	5.866e^-5	0.862	UTR_3_PRIME didum DOWNSTREAM CG12736 & 1 other
3R	8743295	3R_8743295_SNP [dm3] 3R_12917573_SNP [dm6]	G	A	5.910e^-5	0.862	INTRON beat-Vb
2R	17945212	2R_17945212_SNP [dm3] 2R_22057707_SNP [dm6]	T	C	5.940e^-5	0.862	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8743201	3R_8743201_SNP [dm3] 3R_12917479_SNP [dm6]	G	C	5.947e^-5	0.862	INTRON beat-Vb
3R	6606804	3R_6606804_SNP [dm3] 3R_10781082_SNP [dm6]	G	C	5.992e^-5	0.862	NON_SYNONYMOUS_CODING CG42633 DOWNSTREAM Desi
2R	17405940	2R_17405940_SNP [dm3] 2R_21518435_SNP [dm6]	A	T	6.012e^-5	0.862	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
X	18567310	X_18567310_SNP [dm3] X_18673277_SNP [dm6]	C	T	6.076e^-5	0.862	INTERGENIC
2R	12729454	2R_12729454_SNP [dm3] 2R_16841949_SNP [dm6]	T	C	6.090e^-5	0.862	INTERGENIC
3R	8670599	3R_8670599_SNP [dm3] 3R_12844877_SNP [dm6]	G	A	6.142e^-5	0.862	INTRON beat-Va
3L	18276631	3L_18276631_SNP [dm3] 3L_18283531_SNP [dm6]	C	A	6.195e^-5	0.862	INTERGENIC
2R	17679255	2R_17679255_SNP [dm3] 2R_21791750_SNP [dm6]	A	C	6.201e^-5	0.862	UPSTREAM lox2 INTERGENIC
2L	17570592	2L_17570592_SNP [dm3] 2L_17570592_SNP [dm6]	C	T	6.287e^-5	0.862	INTERGENIC
2R	9631826	2R_9631826_SNP [dm3] 2R_13744321_SNP [dm6]	G	T	6.359e^-5	0.862	INTRON fas
2L	17208738	2L_17208738_SNP [dm3] 2L_17208738_SNP [dm6]	T	A	6.397e^-5	0.862	INTRON beat-IIIc
X	20582352	X_20582352_INS [dm3] X_20711325_INS [dm6]	T	TT	6.532e^-5	0.862	INTERGENIC	regulatory region REDfly_CRMs
2R	17405935	2R_17405935_SNP [dm3] 2R_21518430_SNP [dm6]	A	C	6.544e^-5	0.862	DOWNSTREAM CG30288 INTRON CG10494	TF binding site mE1_TFBS_sens
3R	18612960	3R_18612960_SNP [dm3] 3R_22787238_SNP [dm6]	A	C	6.550e^-5	0.862	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18878357	X_18878357_SNP [dm3] X_18984324_SNP [dm6]	C	G	6.572e^-5	0.862	INTRON CG43759
3R	10275566	3R_10275566_SNP [dm3] 3R_14449844_SNP [dm6]	C	T	6.627e^-5	0.862	INTRON cv-c
2R	9631828	2R_9631828_SNP [dm3] 2R_13744323_SNP [dm6]	G	A	6.634e^-5	0.862	INTRON fas
2L	12912461	2L_12912461_INS [dm3] 2L_12912461_INS [dm6]	A	AAATGTAA	6.699e^-5	0.862	UPSTREAM ACXC INTERGENIC
2L	15940953	2L_15940953_SNP [dm3] 2L_15940953_SNP [dm6]	T	A	6.814e^-5	0.862	UPSTREAM CG12448 INTRON beat-Ib
2R	9733476	2R_9733476_SNP [dm3] 2R_13845971_SNP [dm6]	C	A	6.841e^-5	0.862	UTR_5_PRIME Syngr UPSTREAM CG30484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12912442	2L_12912442_SNP [dm3] 2L_12912442_SNP [dm6]	T	A	6.843e^-5	0.862	UPSTREAM ACXC INTERGENIC
X	2310344	X_2310344_SNP [dm3] X_2416311_SNP [dm6]	T	C	6.850e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	18490162	3R_18490162_SNP [dm3] 3R_22664440_SNP [dm6]	A	T	6.855e^-5	0.862	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4367758	2R_4367758_SNP [dm3] 2R_8480253_SNP [dm6]	T	C	6.873e^-5	0.862	SYNONYMOUS_CODING mtt	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	1209113	2R_1209113_SNP [dm3] 2R_5321608_SNP [dm6]	A	G	6.890e^-5	0.862	INTRON sxc	TF binding site mE1_TFBS_sens
3R	6282652	3R_6282652_SNP [dm3] 3R_10456930_SNP [dm6]	G	C	6.899e^-5	0.862	INTERGENIC
3R	11000335	3R_11000335_SNP [dm3] 3R_15174613_SNP [dm6]	C	A	6.900e^-5	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
3L	11266798	3L_11266798_SNP [dm3] 3L_11273698_SNP [dm6]	A	T	6.942e^-5	0.862	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18100941	3L_18100941_SNP [dm3] 3L_18107841_SNP [dm6]	A	T	6.976e^-5	0.862	DOWNSTREAM CG5147 & 1 other INTERGENIC
3R	8645089	3R_8645089_SNP [dm3] 3R_12819367_SNP [dm6]	G	C	6.992e^-5	0.862	INTERGENIC
2R	10962514	2R_10962514_SNP [dm3] 2R_15075009_SNP [dm6]	C	G	7.032e^-5	0.862	INTERGENIC
2R	1209018	2R_1209018_DEL [dm3] 2R_5321513_DEL [dm6]	CTTCGACTTCTGGC...	C	7.041e^-5	0.862	INTRON sxc
3L	21695807	3L_21695807_SNP [dm3] 3L_21702707_SNP [dm6]	T	C	7.244e^-5	0.862	INTRON CG32447
2R	12544772	2R_12544772_SNP [dm3] 2R_16657267_SNP [dm6]	A	G	7.371e^-5	0.862	SYNONYMOUS_CODING Picot
2L	3903972	2L_3903972_SNP [dm3] 2L_3903972_SNP [dm6]	T	G	7.409e^-5	0.862	UTR_3_PRIME fred
2R	18945399	2R_18945399_SNP [dm3] 2R_23057876_SNP [dm6]	C	T	7.421e^-5	0.862	UPSTREAM CG44252 & 1 other INTRON CG44252
2L	9373839	2L_9373839_DEL [dm3] 2L_9373839_DEL [dm6]	CC	C	7.446e^-5	0.862	INTRON Shawl EXON CR43865	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8889159	3R_8889159_SNP [dm3] 3R_13063437_SNP [dm6]	A	G	7.565e^-5	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	6278129	2L_6278129_SNP [dm3] 2L_6278129_SNP [dm6]	A	G	7.613e^-5	0.862	INTRON Ddr
2L	10802598	2L_10802598_SNP [dm3] 2L_10802598_SNP [dm6]	C	A	7.627e^-5	0.862	EXON CR44581
3R	8477289	3R_8477289_SNP [dm3] 3R_12651567_SNP [dm6]	A	C	7.632e^-5	0.862	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	3056175	3R_3056175_SNP [dm3] 3R_7230453_SNP [dm6]	C	T	7.644e^-5	0.862	INTRON CG14608
3R	24810709	3R_24810709_SNP [dm3] 3R_28984987_SNP [dm6]	C	A	7.666e^-5	0.862	INTERGENIC
3R	18490175	3R_18490175_SNP [dm3] 3R_22664453_SNP [dm6]	C	A	7.797e^-5	0.862	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2177448	X_2177448_SNP [dm3] X_2283415_SNP [dm6]	T	G	7.850e^-5	0.862	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3L	3255441	3L_3255441_SNP [dm3] 3L_3255441_SNP [dm6]	T	C	7.859e^-5	0.862	DOWNSTREAM CR43626 INTERGENIC
2L	12912439	2L_12912439_INS [dm3] 2L_12912439_INS [dm6]	G	GTAACAAAT	7.872e^-5	0.862	UPSTREAM ACXC INTERGENIC
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	8.031e^-5	0.862	INTERGENIC
3L	18388158	3L_18388158_SNP [dm3] 3L_18395058_SNP [dm6]	T	G	8.043e^-5	0.862	INTERGENIC
2L	5006060	2L_5006060_SNP [dm3] 2L_5006060_SNP [dm6]	T	A	8.077e^-5	0.862	INTRON Rtnl1
X	17156624	X_17156624_SNP [dm3] X_17262591_SNP [dm6]	T	C	8.094e^-5	0.862	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5161506	2L_5161506_SNP [dm3] 2L_5161506_SNP [dm6]	C	A	8.103e^-5	0.862	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11191533	2L_11191533_SNP [dm3] 2L_11191533_SNP [dm6]	G	A	8.202e^-5	0.862	INTRON Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1211905	2R_1211905_SNP [dm3] 2R_5324400_SNP [dm6]	G	T	8.308e^-5	0.862	INTRON sxc	transposable element FlyBase
2R	14569107	2R_14569107_SNP [dm3] 2R_18681602_SNP [dm6]	T	C	8.309e^-5	0.862	NON_SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6079904	2R_6079904_SNP [dm3] 2R_10192399_SNP [dm6]	G	A	8.313e^-5	0.862	UPSTREAM KCNQ INTERGENIC	TF binding site mE1_TFBS_inv
3R	17646249	3R_17646249_SNP [dm3] 3R_21820527_SNP [dm6]	C	G	8.325e^-5	0.862	INTRON CASK
2L	4174799	2L_4174799_SNP [dm3] 2L_4174799_SNP [dm6]	C	G	8.424e^-5	0.862	INTERGENIC	TF binding site mE1_TFBS_sens
3R	11000261	3R_11000261_SNP [dm3] 3R_15174539_SNP [dm6]	A	G	8.511e^-5	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
2L	6494895	2L_6494895_DEL [dm3] 2L_6494895_DEL [dm6]	CACATATGTAGCTAC...	A	8.552e^-5	0.862	UPSTREAM CG9547 INTRON CG31638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	19469895	2R_19469895_SNP [dm3] 2R_23582372_SNP [dm6]	G	T	8.594e^-5	0.862	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7426302	3L_7426302_SNP [dm3] 3L_7433202_SNP [dm6]	G	T	8.715e^-5	0.862	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	16586932	2L_16586932_SNP [dm3] 2L_16586932_SNP [dm6]	A	G	8.748e^-5	0.862	INTRON CG42389
3L	4505562	3L_4505562_SNP [dm3] 3L_4505562_SNP [dm6]	T	C	8.812e^-5	0.862	SYNONYMOUS_CODING NT1
2L	13877523	2L_13877523_SNP [dm3] 2L_13877523_SNP [dm6]	A	T	8.906e^-5	0.862	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8663261	3R_8663261_SNP [dm3] 3R_12837539_SNP [dm6]	T	C	9.064e^-5	0.862	INTERGENIC
2R	20107566	2R_20107566_SNP [dm3] 2R_24220043_SNP [dm6]	A	C	9.091e^-5	0.862	INTRON CG30419
2L	6264383	2L_6264383_SNP [dm3] 2L_6264383_SNP [dm6]	T	A	9.094e^-5	0.862	NON_SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_sens
3L	7426328	3L_7426328_SNP [dm3] 3L_7433228_SNP [dm6]	T	C	9.180e^-5	0.862	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	21695394	3L_21695394_SNP [dm3] 3L_21702294_SNP [dm6]	T	C	9.228e^-5	0.862	INTRON CG32447
2R	17654395	2R_17654395_SNP [dm3] 2R_21766890_SNP [dm6]	C	T	9.230e^-5	0.862	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
2R	12729324	2R_12729324_SNP [dm3] 2R_16841819_SNP [dm6]	T	A	9.237e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8663516	3R_8663516_SNP [dm3] 3R_12837794_SNP [dm6]	A	T	9.384e^-5	0.862	INTERGENIC
2L	6196189	2L_6196189_SNP [dm3] 2L_6196189_SNP [dm6]	T	C	9.409e^-5	0.862	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3L	9500072	3L_9500072_SNP [dm3] 3L_9506972_SNP [dm6]	C	T	9.545e^-5	0.862	UTR_3_PRIME CG3408
2L	1627206	2L_1627206_SNP [dm3] 2L_1627206_SNP [dm6]	T	C	9.712e^-5	0.862	INTERGENIC
2L	16586937	2L_16586937_SNP [dm3] 2L_16586937_SNP [dm6]	A	G	9.775e^-5	0.862	INTRON CG42389
2R	17402507	2R_17402507_DEL [dm3] 2R_21515002_DEL [dm6]	CGGC	C	9.891e^-5	0.862	DOWNSTREAM MESK2 INTRON MESK2
3R	15075876	3R_15075876_SNP [dm3] 3R_19250154_SNP [dm6]	T	A	9.916e^-5	0.862	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14205664	2L_14205664_SNP [dm3] 2L_14205664_SNP [dm6]	T	G	9.951e^-5	0.862	INTRON Dyrk2
3R	13462156	3R_13462156_INS [dm3] 3R_17636434_INS [dm6]	T	TTT	9.957e^-5	0.862	INTRON CG43175
2L	3901478	2L_3901478_SNP [dm3] 2L_3901478_SNP [dm6]	T	C	1.008e^-4	0.862	INTRON capu
3L	9836990	3L_9836990_SNP [dm3] 3L_9843890_SNP [dm6]	T	G	1.022e^-4	0.862	SYNONYMOUS_CODING RasGAP1	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_HSA mE1_TFBS_sens
3L	16972685	3L_16972685_INS [dm3] 3L_16979585_INS [dm6]	A	AA	1.026e^-4	0.862	INTRON Exn
2R	9631837	2R_9631837_DEL [dm3] 2R_13744332_DEL [dm6]	CCGC	C	1.034e^-4	0.862	INTRON fas
2L	12912456	2L_12912456_SNP [dm3] 2L_12912456_SNP [dm6]	T	A	1.035e^-4	0.862	UPSTREAM ACXC INTERGENIC
2L	18332237	2L_18332237_SNP [dm3] 2L_18332237_SNP [dm6]	C	T	1.036e^-4	0.862	INTRON Fas3	TF binding site BDTNP1_TFBS_da
X	9923439	X_9923439_SNP [dm3] X_10029406_SNP [dm6]	G	A	1.036e^-4	0.862	INTRON Cht6
2L	22003378	2L_22003378_SNP [dm3] 2L_22003378_SNP [dm6]	A	T	1.041e^-4	0.862	INTERGENIC	transposable element FlyBase
X	12582512	X_12582512_SNP [dm3] X_12688479_SNP [dm6]	C	T	1.042e^-4	0.862	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9500077	3L_9500077_SNP [dm3] 3L_9506977_SNP [dm6]	G	A	1.044e^-4	0.862	UTR_3_PRIME CG3408
2L	19808097	2L_19808097_SNP [dm3] 2L_19808097_SNP [dm6]	G	C	1.047e^-4	0.862	INTRON sick
2L	18403323	2L_18403323_SNP [dm3] 2L_18403323_SNP [dm6]	A	G	1.047e^-4	0.862	UPSTREAM CR44487 INTERGENIC
2R	1208766	2R_1208766_SNP [dm3] 2R_5321261_SNP [dm6]	T	C	1.056e^-4	0.862	INTRON sxc
3R	21325957	3R_21325957_SNP [dm3] 3R_25500235_SNP [dm6]	T	A	1.062e^-4	0.862	INTERGENIC
2L	12912580	2L_12912580_SNP [dm3] 2L_12912580_SNP [dm6]	T	G	1.062e^-4	0.862	UTR_5_PRIME ACXC
2L	12912450	2L_12912450_SNP [dm3] 2L_12912450_SNP [dm6]	T	A	1.063e^-4	0.862	UPSTREAM ACXC INTERGENIC
2L	12912451	2L_12912451_SNP [dm3] 2L_12912451_SNP [dm6]	G	T	1.063e^-4	0.862	UPSTREAM ACXC INTERGENIC
2L	3901505	2L_3901505_SNP [dm3] 2L_3901505_SNP [dm6]	T	G	1.065e^-4	0.862	INTRON capu
2R	12729323	2R_12729323_SNP [dm3] 2R_16841818_SNP [dm6]	T	A	1.072e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12731982	2R_12731982_SNP [dm3] 2R_16844477_SNP [dm6]	T	C	1.080e^-4	0.862	SYNONYMOUS_CODING Ugt37c1	TF binding site mE1_TFBS_sens
3R	6614908	3R_6614908_SNP [dm3] 3R_10789186_SNP [dm6]	A	C	1.085e^-4	0.862	SYNONYMOUS_CODING Mcm5 UPSTREAM Art1	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2L	21973984	2L_21973984_SNP [dm3] 2L_21973984_SNP [dm6]	T	G	1.089e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8645298	3R_8645298_SNP [dm3] 3R_12819576_SNP [dm6]	G	A	1.089e^-4	0.862	INTERGENIC
2R	18302554	2R_18302554_SNP [dm3] 2R_22415049_SNP [dm6]	T	G	1.090e^-4	0.862	SYNONYMOUS_CODING qkr58E-1 UPSTREAM qkr58E-2 DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12912287	2L_12912287_SNP [dm3] 2L_12912287_SNP [dm6]	A	G	1.091e^-4	0.862	UPSTREAM ACXC INTERGENIC
3L	5864319	3L_5864319_SNP [dm3] 3L_5871219_SNP [dm6]	C	A	1.099e^-4	0.862	UPSTREAM CG5568 INTERGENIC
2R	18575384	2R_18575384_SNP [dm3] 2R_22687879_SNP [dm6]	G	C	1.099e^-4	0.862	SYNONYMOUS_CODING ppa	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16863161	2R_16863161_SNP [dm3] 2R_20975656_SNP [dm6]	A	G	1.100e^-4	0.862	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8891604	3R_8891604_SNP [dm3] 3R_13065882_SNP [dm6]	T	A	1.114e^-4	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	8185668	2L_8185668_SNP [dm3] 2L_8185668_SNP [dm6]	C	G	1.114e^-4	0.862	INTRON Piezo
2L	12649015	2L_12649015_SNP [dm3] 2L_12649015_SNP [dm6]	T	C	1.118e^-4	0.862	INTERGENIC
2L	13477329	2L_13477329_SNP [dm3] 2L_13477329_SNP [dm6]	G	A	1.118e^-4	0.862	INTRON CG42784
2R	18689911	2R_18689911_SNP [dm3] 2R_22802406_SNP [dm6]	T	C	1.119e^-4	0.862	DOWNSTREAM blw INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15394555	2R_15394555_INS [dm3] 2R_19507050_INS [dm6]	A	AC	1.124e^-4	0.862	UPSTREAM tRNA:H:56E INTERGENIC
3R	14655592	3R_14655592_SNP [dm3] 3R_18829870_SNP [dm6]	G	T	1.126e^-4	0.862	INTRON CG18208
3R	24819100	3R_24819100_SNP [dm3] 3R_28993378_SNP [dm6]	G	A	1.135e^-4	0.862	INTRON wat	TF binding site mE1_TFBS_HSA
3R	11631542	3R_11631542_SNP [dm3] 3R_15805820_SNP [dm6]	C	T	1.136e^-4	0.862	INTRON alpha-Man-IIb
2L	15215592	2L_15215592_SNP [dm3] 2L_15215592_SNP [dm6]	T	C	1.146e^-4	0.862	INTRON CG43230
3R	18174530	3R_18174530_SNP [dm3] 3R_22348808_SNP [dm6]	A	T	1.160e^-4	0.862	INTERGENIC
2R	11610647	2R_11610647_SNP [dm3] 2R_15723142_SNP [dm6]	C	T	1.165e^-4	0.862	INTERGENIC
3R	9862129	3R_9862129_DEL [dm3] 3R_14036407_DEL [dm6]	TTTTAAGC	T	1.195e^-4	0.862	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
X	3338431	X_3338431_SNP [dm3] X_3444398_SNP [dm6]	A	G	1.201e^-4	0.862	INTRON CR44999 & 1 other
3L	10321709	3L_10321709_INS [dm3] 3L_10328609_INS [dm6]	T	TGAAGT	1.206e^-4	0.862	INTERGENIC
3L	7426322	3L_7426322_SNP [dm3] 3L_7433222_SNP [dm6]	T	C	1.212e^-4	0.862	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	20114003	3R_20114003_SNP [dm3] 3R_24288281_SNP [dm6]	G	C	1.212e^-4	0.862	UTR_3_PRIME CG6356 DOWNSTREAM CG34290	TF binding site mE1_TFBS_sbb
2L	11191575	2L_11191575_SNP [dm3] 2L_11191575_SNP [dm6]	T	A	1.222e^-4	0.862	INTRON Ca-beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4360987	2R_4360987_SNP [dm3] 2R_8473482_SNP [dm6]	C	G	1.222e^-4	0.862	NON_SYNONYMOUS_CODING Mal-A8 DOWNSTREAM mtt
3R	17646207	3R_17646207_SNP [dm3] 3R_21820485_SNP [dm6]	G	A	1.226e^-4	0.862	INTRON CASK
X	12582538	X_12582538_INS [dm3] X_12688505_INS [dm6]	G	GTTGCTG	1.232e^-4	0.862	CODON_INSERTION Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3904300	2L_3904300_SNP [dm3] 2L_3904300_SNP [dm6]	T	A	1.238e^-4	0.862	UTR_3_PRIME fred
X	15167489	X_15167489_INS [dm3] X_15273456_INS [dm6]	T	TT	1.242e^-4	0.862	INTERGENIC
2L	16809203	2L_16809203_INS [dm3] 2L_16809203_INS [dm6]	T	TT	1.246e^-4	0.862	INTRON CG13280 & 1 other
3R	8743208	3R_8743208_SNP [dm3] 3R_12917486_SNP [dm6]	G	C	1.267e^-4	0.862	INTRON beat-Vb
2R	12629772	2R_12629772_SNP [dm3] 2R_16742267_SNP [dm6]	G	A	1.284e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11266819	3L_11266819_SNP [dm3] 3L_11273719_SNP [dm6]	A	T	1.286e^-4	0.862	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7053533	3R_7053533_SNP [dm3] 3R_11227811_SNP [dm6]	A	C	1.287e^-4	0.862	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	11266663	3L_11266663_SNP [dm3] 3L_11273563_SNP [dm6]	A	C	1.289e^-4	0.862	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25744246	3R_25744246_SNP [dm3] 3R_29918524_SNP [dm6]	C	T	1.299e^-4	0.862	INTRON trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18609492	2R_18609492_SNP [dm3] 2R_22721987_SNP [dm6]	G	A	1.306e^-4	0.862	SYNONYMOUS_CODING jbug DOWNSTREAM jbug
2L	7495117	2L_7495117_SNP [dm3] 2L_7495117_SNP [dm6]	G	T	1.321e^-4	0.862	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24817782	3R_24817782_SNP [dm3] 3R_28992060_SNP [dm6]	C	A	1.330e^-4	0.862	DOWNSTREAM wat INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24695745	3R_24695745_SNP [dm3] 3R_28870023_SNP [dm6]	G	A	1.332e^-4	0.862	UTR_3_PRIME spg DOWNSTREAM CG33203 & 1 other
2L	13306243	2L_13306243_SNP [dm3] 2L_13306243_SNP [dm6]	G	A	1.333e^-4	0.862	SYNONYMOUS_CODING CG43779 UTR_5_PRIME CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad
2L	15473950	2L_15473950_SNP [dm3] 2L_15473950_SNP [dm6]	A	G	1.336e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3L	15608034	3L_15608034_SNP [dm3] 3L_15614934_SNP [dm6]	T	C	1.337e^-4	0.862	INTRON comm3
2L	7495115	2L_7495115_SNP [dm3] 2L_7495115_SNP [dm6]	G	T	1.340e^-4	0.862	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.344e^-4	0.862	INTRON 4EHP
2L	3881864	2L_3881864_DEL [dm3] 2L_3881864_DEL [dm6]	AA	A	1.345e^-4	0.862	INTRON capu
2R	12875961	2R_12875961_SNP [dm3] 2R_16988456_SNP [dm6]	C	T	1.345e^-4	0.862	INTRON Cbp53E
3R	11000317	3R_11000317_SNP [dm3] 3R_15174595_SNP [dm6]	T	A	1.357e^-4	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
3R	11000246	3R_11000246_SNP [dm3] 3R_15174524_SNP [dm6]	C	T	1.360e^-4	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
2L	22015004	2L_22015004_SNP [dm3] 2L_22015004_SNP [dm6]	T	C	1.371e^-4	0.862	UPSTREAM CG31693 INTERGENIC	transposable element FlyBase
3L	10388513	3L_10388513_SNP [dm3] 3L_10395413_SNP [dm6]	T	A	1.376e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6924030	3L_6924030_INS [dm3] 3L_6930930_INS [dm6]	T	TA	1.388e^-4	0.862	DOWNSTREAM CG45413 INTERGENIC
3R	14535910	3R_14535910_SNP [dm3] 3R_18710188_SNP [dm6]	T	G	1.389e^-4	0.862	INTRON VAChT & 1 other
2R	15404899	2R_15404899_SNP [dm3] 2R_19517394_SNP [dm6]	G	A	1.391e^-4	0.862	DOWNSTREAM sm INTERGENIC
3L	5763239	3L_5763239_SNP [dm3] 3L_5770139_SNP [dm6]	A	G	1.405e^-4	0.862	INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3885897	2L_3885897_SNP [dm3] 2L_3885897_SNP [dm6]	C	T	1.410e^-4	0.862	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	13414109	3R_13414109_SNP [dm3] 3R_17588387_SNP [dm6]	G	C	1.415e^-4	0.862	INTERGENIC
X	2177439	X_2177439_SNP [dm3] X_2283406_SNP [dm6]	G	C	1.416e^-4	0.862	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
2R	1210551	2R_1210551_SNP [dm3] 2R_5323046_SNP [dm6]	A	C	1.421e^-4	0.862	INTRON sxc
3R	26056055	3R_26056055_SNP [dm3] 3R_30230333_SNP [dm6]	G	A	1.426e^-4	0.862	INTERGENIC
2R	19465000	2R_19465000_SNP [dm3] 2R_23577477_SNP [dm6]	A	T	1.430e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	17156647	X_17156647_SNP [dm3] X_17262614_SNP [dm6]	A	T	1.432e^-4	0.862	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9770952	3R_9770952_SNP [dm3] 3R_13945230_SNP [dm6]	G	A	1.435e^-4	0.862	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7495119	2L_7495119_SNP [dm3] 2L_7495119_SNP [dm6]	C	A	1.436e^-4	0.862	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11911343	2R_11911343_SNP [dm3] 2R_16023838_SNP [dm6]	A	G	1.441e^-4	0.862	SYNONYMOUS_CODING CG8399 DOWNSTREAM casp
2R	19464189	2R_19464189_SNP [dm3] 2R_23576666_SNP [dm6]	A	T	1.445e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11000304	3R_11000304_SNP [dm3] 3R_15174582_SNP [dm6]	A	T	1.446e^-4	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
3L	6546152	3L_6546152_SNP [dm3] 3L_6553052_SNP [dm6]	G	A	1.449e^-4	0.862	INTRON CG18769	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3311609	2R_3311609_SNP [dm3] 2R_7424104_SNP [dm6]	C	A	1.451e^-4	0.862	INTRON so	TF binding site mE1_TFBS_cad
2L	13822849	2L_13822849_SNP [dm3] 2L_13822849_SNP [dm6]	G	T	1.451e^-4	0.862	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1726919	3L_1726919_SNP [dm3] 3L_1726919_SNP [dm6]	A	C	1.465e^-4	0.862	INTRON drpr
X	16601705	X_16601705_SNP [dm3] X_16707672_SNP [dm6]	C	T	1.468e^-4	0.862	UTR_5_PRIME CG4678 UPSTREAM CG9672 INTRON CG4678
X	5950815	X_5950815_SNP [dm3] X_6056782_SNP [dm6]	G	C	1.468e^-4	0.862	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
2R	19464996	2R_19464996_INS [dm3] 2R_23577473_INS [dm6]	T	TC	1.473e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	14693247	2R_14693247_DEL [dm3] 2R_18805742_DEL [dm6]	TAATATGTGT	T	1.475e^-4	0.862	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16860212	3L_16860212_SNP [dm3] 3L_16867112_SNP [dm6]	C	A	1.481e^-4	0.862	INTRON Lmpt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19465020	2R_19465020_INS [dm3] 2R_23577497_INS [dm6]	C	CCA	1.484e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19465024	2R_19465024_MNP [dm3] 2R_23577501_MNP [dm6]	GTCT	TAGA	1.484e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19465029	2R_19465029_SNP [dm3] 2R_23577506_SNP [dm6]	C	A	1.484e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19465032	2R_19465032_SNP [dm3] 2R_23577509_SNP [dm6]	A	G	1.484e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	14534712	2L_14534712_SNP [dm3] 2L_14534712_SNP [dm6]	A	G	1.488e^-4	0.862	INTERGENIC
3L	16859452	3L_16859452_SNP [dm3] 3L_16866352_SNP [dm6]	A	T	1.488e^-4	0.862	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2R	6078876	2R_6078876_SNP [dm3] 2R_10191371_SNP [dm6]	G	A	1.489e^-4	0.862	INTRON KCNQ
2L	1627690	2L_1627690_SNP [dm3] 2L_1627690_SNP [dm6]	T	A	1.491e^-4	0.862	INTERGENIC
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	1.492e^-4	0.862	DOWNSTREAM CR43626 INTERGENIC
2R	12729326	2R_12729326_INS [dm3] 2R_16841821_INS [dm6]	G	TA	1.497e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12912446	2L_12912446_SNP [dm3] 2L_12912446_SNP [dm6]	C	G	1.499e^-4	0.862	UPSTREAM ACXC INTERGENIC
2L	17734027	2L_17734027_INS [dm3] 2L_17734027_INS [dm6]	T	TAG	1.501e^-4	0.862	INTRON CadN
2L	16388745	2L_16388745_SNP [dm3] 2L_16388745_SNP [dm6]	C	A	1.507e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8767534	3R_8767534_SNP [dm3] 3R_12941812_SNP [dm6]	G	C	1.511e^-4	0.862	INTERGENIC
2R	18609507	2R_18609507_SNP [dm3] 2R_22722002_SNP [dm6]	C	T	1.512e^-4	0.862	SYNONYMOUS_CODING jbug DOWNSTREAM jbug
3L	6321045	3L_6321045_SNP [dm3] 3L_6327945_SNP [dm6]	T	A	1.522e^-4	0.862	SYNONYMOUS_CODING Or65c DOWNSTREAM Or65b
3R	14907240	3R_14907240_SNP [dm3] 3R_19081518_SNP [dm6]	C	A	1.524e^-4	0.862	INTRON cdi
3L	14623690	3L_14623690_SNP [dm3] 3L_14630590_SNP [dm6]	A	G	1.525e^-4	0.862	SYNONYMOUS_CODING RecQ5
2R	20692798	2R_20692798_SNP [dm3] 2R_24805275_SNP [dm6]	C	T	1.528e^-4	0.862	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_sens
3R	15483753	3R_15483753_SNP [dm3] 3R_19658031_SNP [dm6]	C	T	1.538e^-4	0.862	UPSTREAM CG6184 INTERGENIC
3R	20114314	3R_20114314_SNP [dm3] 3R_24288592_SNP [dm6]	T	C	1.547e^-4	0.862	UTR_3_PRIME CG6356 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2516579	2L_2516579_SNP [dm3] 2L_2516579_SNP [dm6]	T	C	1.548e^-4	0.862	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19465004	2R_19465004_INS [dm3] 2R_23577481_INS [dm6]	A	ACTA	1.549e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	18100895	3L_18100895_SNP [dm3] 3L_18107795_SNP [dm6]	C	G	1.550e^-4	0.862	DOWNSTREAM CG5147 & 1 other INTERGENIC
2R	4850297	2R_4850297_SNP [dm3] 2R_8962792_SNP [dm6]	C	G	1.551e^-4	0.862	UTR_3_PRIME babo DOWNSTREAM CG8216
2L	10493653	2L_10493653_SNP [dm3] 2L_10493653_SNP [dm6]	A	G	1.551e^-4	0.862	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12092222	2L_12092222_SNP [dm3] 2L_12092222_SNP [dm6]	G	A	1.553e^-4	0.862	INTRON Pex19 EXON CR44594	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	798775	2L_798775_SNP [dm3] 2L_798775_SNP [dm6]	C	T	1.558e^-4	0.862	INTERGENIC
2R	7113588	2R_7113588_SNP [dm3] 2R_11226083_SNP [dm6]	C	T	1.559e^-4	0.862	SYNONYMOUS_CODING CG7737 DOWNSTREAM metro	TF binding site mE1_TFBS_cad
2L	9419014	2L_9419014_SNP [dm3] 2L_9419014_SNP [dm6]	A	G	1.566e^-4	0.862	INTRON Mco1
2L	12912455	2L_12912455_SNP [dm3] 2L_12912455_SNP [dm6]	T	A	1.569e^-4	0.862	UPSTREAM ACXC INTERGENIC
3R	8873349	3R_8873349_SNP [dm3] 3R_13047627_SNP [dm6]	G	T	1.574e^-4	0.862	UPSTREAM CG31157 DOWNSTREAM Hsc70-2 INTERGENIC
3L	11620990	3L_11620990_SNP [dm3] 3L_11627890_SNP [dm6]	G	C	1.584e^-4	0.862	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19465030	2R_19465030_SNP [dm3] 2R_23577507_SNP [dm6]	A	G	1.592e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	2260663	2L_2260663_SNP [dm3] 2L_2260663_SNP [dm6]	G	T	1.593e^-4	0.862	UPSTREAM CR44788 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2081381	X_2081381_SNP [dm3] X_2187348_SNP [dm6]	C	A	1.602e^-4	0.862	SYNONYMOUS_CODING CG17777 UPSTREAM CG3457	TF binding site mE1_TFBS_chinmo
X	12514468	X_12514468_SNP [dm3] X_12620435_SNP [dm6]	C	G	1.602e^-4	0.862	INTRON CG11085	TF binding site BDTNP1_TFBS_sna
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	1.603e^-4	0.862	INTERGENIC
3R	8888716	3R_8888716_SNP [dm3] 3R_13062994_SNP [dm6]	T	C	1.606e^-4	0.862	INTRON sim
X	9740018	X_9740018_SNP [dm3] X_9845985_SNP [dm6]	G	C	1.606e^-4	0.862	SYNONYMOUS_CODING CG32698
2R	19465013	2R_19465013_SNP [dm3] 2R_23577490_SNP [dm6]	A	G	1.625e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	10751519	3R_10751519_SNP [dm3] 3R_14925797_SNP [dm6]	A	C	1.628e^-4	0.862	INTERGENIC
3R	9353252	3R_9353252_SNP [dm3] 3R_13527530_SNP [dm6]	G	C	1.631e^-4	0.862	INTERGENIC
X	5950829	X_5950829_SNP [dm3] X_6056796_SNP [dm6]	C	T	1.632e^-4	0.862	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
3R	8690881	3R_8690881_SNP [dm3] 3R_12865159_SNP [dm6]	A	T	1.634e^-4	0.862	INTERGENIC
2R	16430313	2R_16430313_SNP [dm3] 2R_20542808_SNP [dm6]	C	A	1.644e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8764545	3R_8764545_SNP [dm3] 3R_12938823_SNP [dm6]	C	T	1.647e^-4	0.862	INTERGENIC
3R	20887205	3R_20887205_SNP [dm3] 3R_25061483_SNP [dm6]	C	T	1.649e^-4	0.862	SYNONYMOUS_CODING Unc-13-4B
2R	1213474	2R_1213474_SNP [dm3] 2R_5325969_SNP [dm6]	T	C	1.692e^-4	0.862	SYNONYMOUS_CODING sxc
3R	8645334	3R_8645334_SNP [dm3] 3R_12819612_SNP [dm6]	G	A	1.693e^-4	0.862	INTERGENIC
3L	18559692	3L_18559692_SNP [dm3] 3L_18566592_SNP [dm6]	G	T	1.695e^-4	0.862	INTRON AstC-R1
3L	14452781	3L_14452781_SNP [dm3] 3L_14459681_SNP [dm6]	T	C	1.702e^-4	0.862	INTRON bbg
2R	6081255	2R_6081255_SNP [dm3] 2R_10193750_SNP [dm6]	T	A	1.702e^-4	0.862	INTERGENIC
2L	18667406	2L_18667406_SNP [dm3] 2L_18667406_SNP [dm6]	G	A	1.704e^-4	0.862	SYNONYMOUS_CODING CG43338 DOWNSTREAM CR42490	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10697976	3L_10697976_SNP [dm3] 3L_10704876_SNP [dm6]	G	A	1.705e^-4	0.862	INTERGENIC
2R	4266965	2R_4266965_SNP [dm3] 2R_8379460_SNP [dm6]	C	T	1.710e^-4	0.862	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1630814	2L_1630814_SNP [dm3] 2L_1630814_SNP [dm6]	C	G	1.711e^-4	0.862	INTERGENIC
2L	1631074	2L_1631074_SNP [dm3] 2L_1631074_SNP [dm6]	T	C	1.711e^-4	0.862	INTERGENIC
2R	7072353	2R_7072353_SNP [dm3] 2R_11184848_SNP [dm6]	A	C	1.713e^-4	0.862	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21903181	3L_21903181_SNP [dm3] 3L_21910081_SNP [dm6]	T	C	1.731e^-4	0.862	INTRON mub
2L	12092223	2L_12092223_SNP [dm3] 2L_12092223_SNP [dm6]	T	G	1.739e^-4	0.862	INTRON Pex19 EXON CR44594	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	21060317	3L_21060317_SNP [dm3] 3L_21067217_SNP [dm6]	G	A	1.745e^-4	0.862	UPSTREAM siz DOWNSTREAM CG43072 INTRON siz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	15473934	2L_15473934_SNP [dm3] 2L_15473934_SNP [dm6]	G	T	1.745e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3R	13203966	3R_13203966_SNP [dm3] 3R_17378244_SNP [dm6]	G	A	1.747e^-4	0.862	INTRON Brf	TF binding site mE1_TFBS_Trl
X	15167608	X_15167608_SNP [dm3] X_15273575_SNP [dm6]	G	A	1.748e^-4	0.862	INTERGENIC
3R	8890595	3R_8890595_SNP [dm3] 3R_13064873_SNP [dm6]	A	C	1.750e^-4	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	10952400	3L_10952400_SNP [dm3] 3L_10959300_SNP [dm6]	G	T	1.754e^-4	0.862	EXON CR45248	TF binding site BDTNP1_TFBS_dl
2L	12912458	2L_12912458_SNP [dm3] 2L_12912458_SNP [dm6]	T	G	1.760e^-4	0.862	UPSTREAM ACXC INTERGENIC
3R	22886226	3R_22886226_SNP [dm3] 3R_27060504_SNP [dm6]	A	G	1.760e^-4	0.862	SYNONYMOUS_CODING Nep5
2L	7495112	2L_7495112_INS [dm3] 2L_7495112_INS [dm6]	C	CCTAAACCTA	1.769e^-4	0.862	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17932495	2R_17932495_SNP [dm3] 2R_22044990_SNP [dm6]	G	C	1.772e^-4	0.862	INTERGENIC
2L	16631871	2L_16631871_SNP [dm3] 2L_16631871_SNP [dm6]	A	G	1.776e^-4	0.862	INTRON CG42389
X	20385844	X_20385844_DEL [dm3] X_20514817_DEL [dm6]	CT	G	1.777e^-4	0.862	UTR_3_PRIME CG1812
X	19870951	X_19870951_SNP [dm3] X_19976918_SNP [dm6]	G	T	1.785e^-4	0.862	INTERGENIC
2R	10947836	2R_10947836_SNP [dm3] 2R_15060331_SNP [dm6]	T	A	1.793e^-4	0.862	INTERGENIC
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	1.808e^-4	0.862	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	19209047	2R_19209047_SNP [dm3] 2R_23321524_SNP [dm6]	G	T	1.829e^-4	0.862	UTR_3_PRIME CG30416
3R	11106669	3R_11106669_SNP [dm3] 3R_15280947_SNP [dm6]	T	C	1.830e^-4	0.862	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16835036	3L_16835036_SNP [dm3] 3L_16841936_SNP [dm6]	G	T	1.832e^-4	0.862	UPSTREAM TSG101 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14058644	3R_14058644_DEL [dm3] 3R_18232922_DEL [dm6]	CTTTATGATTC...	C	1.846e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12329236	2R_12329236_SNP [dm3] 2R_16441731_SNP [dm6]	T	A	1.847e^-4	0.862	INTERGENIC
2R	12547596	2R_12547596_INS [dm3] 2R_16660091_INS [dm6]	T	TAT	1.849e^-4	0.862	UPSTREAM Picot INTRON Picot
3L	5387745	3L_5387745_SNP [dm3] 3L_5394645_SNP [dm6]	T	G	1.855e^-4	0.862	INTERGENIC
2L	9934460	2L_9934460_SNP [dm3] 2L_9934460_SNP [dm6]	C	T	1.859e^-4	0.862	DOWNSTREAM CG31712 INTERGENIC
3L	14623693	3L_14623693_SNP [dm3] 3L_14630593_SNP [dm6]	A	C	1.860e^-4	0.862	NON_SYNONYMOUS_CODING RecQ5
2L	13869018	2L_13869018_SNP [dm3] 2L_13869018_SNP [dm6]	G	T	1.860e^-4	0.862	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14752072	X_14752072_SNP [dm3] X_14858039_SNP [dm6]	G	T	1.860e^-4	0.862	INTRON Flo2
3L	7253355	3L_7253355_SNP [dm3] 3L_7260255_SNP [dm6]	C	G	1.861e^-4	0.862	INTRON CG14830
X	16816835	X_16816835_SNP [dm3] X_16922802_SNP [dm6]	C	A	1.862e^-4	0.862	INTRON CG4928
2L	2717729	2L_2717729_SNP [dm3] 2L_2717729_SNP [dm6]	G	C	1.866e^-4	0.862	INTRON CG31690
2R	8294081	2R_8294081_SNP [dm3] 2R_12406576_SNP [dm6]	T	C	1.867e^-4	0.862	UTR_3_PRIME Cpr49Af DOWNSTREAM Cpr49Af
3L	3261013	3L_3261013_DEL [dm3] 3L_3261013_DEL [dm6]	ATT	G	1.871e^-4	0.862	INTRON ckd
X	20581525	X_20581525_DEL [dm3] X_20710498_DEL [dm6]	AA	A	1.871e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3R	8707682	3R_8707682_SNP [dm3] 3R_12881960_SNP [dm6]	T	C	1.871e^-4	0.862	INTERGENIC
3R	7177502	3R_7177502_SNP [dm3] 3R_11351780_SNP [dm6]	A	G	1.884e^-4	0.862	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3329670	2L_3329670_SNP [dm3] 2L_3329670_SNP [dm6]	A	C	1.892e^-4	0.862	UTR_3_PRIME CG33282
2R	19469897	2R_19469897_SNP [dm3] 2R_23582374_SNP [dm6]	T	C	1.894e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	24522364	3L_24522364_SNP [dm3] 3L_24529264_SNP [dm6]	A	G	1.911e^-4	0.862	INTERGENIC
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	1.919e^-4	0.862	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19915475	2L_19915475_DEL [dm3] 2L_19915475_DEL [dm6]	TAT	T	1.924e^-4	0.862	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2516576	2L_2516576_SNP [dm3] 2L_2516576_SNP [dm6]	G	A	1.925e^-4	0.862	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19453969	3L_19453969_SNP [dm3] 3L_19460869_SNP [dm6]	T	G	1.931e^-4	0.862	INTERGENIC
2R	19479704	2R_19479704_SNP [dm3] 2R_23592181_SNP [dm6]	C	A	1.934e^-4	0.862	INTRON apt
2L	16813603	2L_16813603_SNP [dm3] 2L_16813603_SNP [dm6]	T	A	1.936e^-4	0.862	SYNONYMOUS_CODING CG13272 INTRON CG13280
X	2177196	X_2177196_SNP [dm3] X_2283163_SNP [dm6]	G	A	1.940e^-4	0.862	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3L	11266667	3L_11266667_SNP [dm3] 3L_11273567_SNP [dm6]	A	G	1.942e^-4	0.862	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18645095	2L_18645095_SNP [dm3] 2L_18645095_SNP [dm6]	A	G	1.949e^-4	0.862	INTRON MESR3
3L	18593227	3L_18593227_SNP [dm3] 3L_18600127_SNP [dm6]	C	T	1.958e^-4	0.862	DOWNSTREAM CG13380 & 1 other INTERGENIC
2R	8053209	2R_8053209_SNP [dm3] 2R_12165704_SNP [dm6]	G	A	1.960e^-4	0.862	START_GAINED CG34232 UTR_5_PRIME CG34232 DOWNSTREAM CG13177 & 1 other	TF binding site mE1_TFBS_inv
X	4379875	X_4379875_SNP [dm3] X_4485842_SNP [dm6]	G	C	1.968e^-4	0.862	DOWNSTREAM bi INTRON CR32773
X	18876250	X_18876250_SNP [dm3] X_18982217_SNP [dm6]	C	A	1.973e^-4	0.862	INTRON CG43759
3L	17328708	3L_17328708_SNP [dm3] 3L_17335608_SNP [dm6]	C	G	1.993e^-4	0.862	DOWNSTREAM CR44564 INTERGENIC
2L	6196155	2L_6196155_SNP [dm3] 2L_6196155_SNP [dm6]	C	T	1.998e^-4	0.862	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2L	18324657	2L_18324657_SNP [dm3] 2L_18324657_SNP [dm6]	T	A	2.001e^-4	0.862	INTRON Fas3
2L	14457121	2L_14457121_INS [dm3] 2L_14457121_INS [dm6]	C	CGC	2.002e^-4	0.862	EXON CR44730	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6819619	3L_6819619_SNP [dm3] 3L_6826519_SNP [dm6]	C	T	2.003e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10275302	3R_10275302_SNP [dm3] 3R_14449580_SNP [dm6]	C	G	2.005e^-4	0.862	INTRON cv-c
2R	12629714	2R_12629714_SNP [dm3] 2R_16742209_SNP [dm6]	C	A	2.012e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12649118	2L_12649118_SNP [dm3] 2L_12649118_SNP [dm6]	T	C	2.036e^-4	0.862	INTERGENIC
2R	16512931	2R_16512931_SNP [dm3] 2R_20625426_SNP [dm6]	A	C	2.037e^-4	0.862	SYNONYMOUS_CODING CG16742
2R	8490210	2R_8490210_SNP [dm3] 2R_12602705_SNP [dm6]	T	C	2.038e^-4	0.862	INTRON Amph
3L	12308717	3L_12308717_SNP [dm3] 3L_12315617_SNP [dm6]	T	A	2.040e^-4	0.862	INTERGENIC
3R	20956905	3R_20956905_DEL [dm3] 3R_25131183_DEL [dm6]	AGA	A	2.042e^-4	0.862	UPSTREAM Bili DOWNSTREAM Clbn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3449272	3R_3449272_SNP [dm3] 3R_7623550_SNP [dm6]	C	A	2.046e^-4	0.862	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1540044	2L_1540044_SNP [dm3] 2L_1540044_SNP [dm6]	A	G	2.052e^-4	0.862	INTERGENIC
3R	11000303	3R_11000303_SNP [dm3] 3R_15174581_SNP [dm6]	A	C	2.054e^-4	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
2L	21957000	2L_21957000_SNP [dm3] 2L_21957000_SNP [dm6]	G	A	2.056e^-4	0.862	UPSTREAM CR44217 INTERGENIC
X	16698652	X_16698652_SNP [dm3] X_16804619_SNP [dm6]	G	T	2.056e^-4	0.862	NON_SYNONYMOUS_CODING CG13005	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7426352	3L_7426352_SNP [dm3] 3L_7433252_SNP [dm6]	T	C	2.065e^-4	0.862	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	13822854	2L_13822854_SNP [dm3] 2L_13822854_SNP [dm6]	T	A	2.078e^-4	0.862	NON_SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8539826	2L_8539826_SNP [dm3] 2L_8539826_SNP [dm6]	T	G	2.084e^-4	0.862	INTRON CG17834
2L	11199179	2L_11199179_SNP [dm3] 2L_11199179_SNP [dm6]	T	G	2.086e^-4	0.862	INTRON Ca-beta
3L	19655662	3L_19655662_SNP [dm3] 3L_19662562_SNP [dm6]	A	G	2.092e^-4	0.862	INTRON tey	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8663528	3R_8663528_SNP [dm3] 3R_12837806_SNP [dm6]	A	G	2.099e^-4	0.862	INTERGENIC
2L	12912448	2L_12912448_SNP [dm3] 2L_12912448_SNP [dm6]	C	A	2.105e^-4	0.862	UPSTREAM ACXC INTERGENIC
3R	8685201	3R_8685201_SNP [dm3] 3R_12859479_SNP [dm6]	A	T	2.114e^-4	0.862	UPSTREAM CG10126 INTERGENIC
2L	6445401	2L_6445401_SNP [dm3] 2L_6445401_SNP [dm6]	T	C	2.124e^-4	0.862	SYNONYMOUS_CODING CG9527
3R	19471272	3R_19471272_SNP [dm3] 3R_23645550_SNP [dm6]	C	A	2.128e^-4	0.862	INTRON CG31145	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20581923	X_20581923_SNP [dm3] X_20710896_SNP [dm6]	G	A	2.129e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
X	7733681	X_7733681_DEL [dm3] X_7839648_DEL [dm6]	GG	G	2.142e^-4	0.862	INTRON CG1402
2L	16556813	2L_16556813_SNP [dm3] 2L_16556813_SNP [dm6]	A	G	2.151e^-4	0.862	INTRON CG42389
X	2307327	X_2307327_SNP [dm3] X_2413294_SNP [dm6]	A	T	2.152e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19482533	3R_19482533_SNP [dm3] 3R_23656811_SNP [dm6]	T	A	2.166e^-4	0.862	INTRON CG31145
2L	3905010	2L_3905010_SNP [dm3] 2L_3905010_SNP [dm6]	A	C	2.168e^-4	0.862	UTR_3_PRIME fred DOWNSTREAM fred
2R	16137778	2R_16137778_DEL [dm3] 2R_20250273_DEL [dm6]	CTGAAAAAC	C	2.173e^-4	0.862	SPLICE_SITE_ACCEPTOR CG9864 SPLICE_SITE_REGION CG9864 INTRON CG9864
X	9923212	X_9923212_SNP [dm3] X_10029179_SNP [dm6]	T	A	2.176e^-4	0.862	INTRON Cht6
3R	8883120	3R_8883120_SNP [dm3] 3R_13057398_SNP [dm6]	G	T	2.183e^-4	0.862	UPSTREAM sim DOWNSTREAM pic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12214958	2R_12214958_SNP [dm3] 2R_16327453_SNP [dm6]	G	T	2.183e^-4	0.862	INTRON Vha44
3R	8710425	3R_8710425_SNP [dm3] 3R_12884703_SNP [dm6]	G	A	2.183e^-4	0.862	INTERGENIC
2L	13281509	2L_13281509_SNP [dm3] 2L_13281509_SNP [dm6]	A	G	2.194e^-4	0.862	SYNONYMOUS_CODING CG44085 INTRON CG44085
X	17684077	X_17684077_SNP [dm3] X_17790044_SNP [dm6]	T	C	2.195e^-4	0.862	UPSTREAM OdsH INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14752040	X_14752040_SNP [dm3] X_14858007_SNP [dm6]	A	C	2.198e^-4	0.862	INTRON Flo2
3R	18103727	3R_18103727_SNP [dm3] 3R_22278005_SNP [dm6]	C	A	2.200e^-4	0.862	INTRON SKIP
2R	14696310	2R_14696310_SNP [dm3] 2R_18808805_SNP [dm6]	T	G	2.212e^-4	0.862	INTRON CG15096	TF binding site mE1_TFBS_chinmo
X	9922907	X_9922907_SNP [dm3] X_10028874_SNP [dm6]	A	G	2.215e^-4	0.862	INTRON Cht6
X	14691334	X_14691334_SNP [dm3] X_14797301_SNP [dm6]	T	C	2.228e^-4	0.862	SYNONYMOUS_CODING rut INTRON rut
3L	7463123	3L_7463123_SNP [dm3] 3L_7470023_SNP [dm6]	G	A	2.230e^-4	0.862	SYNONYMOUS_CODING CG8543
2L	6589418	2L_6589418_SNP [dm3] 2L_6589418_SNP [dm6]	C	T	2.231e^-4	0.862	INTRON CG11319
2L	1545443	2L_1545443_SNP [dm3] 2L_1545443_SNP [dm6]	A	T	2.232e^-4	0.862	INTERGENIC
3R	10979134	3R_10979134_SNP [dm3] 3R_15153412_SNP [dm6]	C	G	2.237e^-4	0.862	INTRON Gyc88E
X	15328188	X_15328188_SNP [dm3] X_15434155_SNP [dm6]	T	C	2.245e^-4	0.862	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17418833	X_17418833_INS [dm3] X_17524800_INS [dm6]	T	TT	2.266e^-4	0.862	INTRON CG43658
2L	3749641	2L_3749641_SNP [dm3] 2L_3749641_SNP [dm6]	T	A	2.270e^-4	0.862	INTRON CG10019
3R	19791274	3R_19791274_SNP [dm3] 3R_23965552_SNP [dm6]	A	G	2.274e^-4	0.862	INTRON CG31140	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16477791	2R_16477791_DEL [dm3] 2R_20590286_DEL [dm6]	GAAG	G	2.276e^-4	0.862	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18324810	2L_18324810_SNP [dm3] 2L_18324810_SNP [dm6]	T	C	2.280e^-4	0.862	INTRON Fas3
2L	7156841	2L_7156841_SNP [dm3] 2L_7156841_SNP [dm6]	T	C	2.281e^-4	0.862	UTR_5_PRIME Pvf3
3L	6319123	3L_6319123_SNP [dm3] 3L_6326023_SNP [dm6]	A	T	2.285e^-4	0.862	NON_SYNONYMOUS_CODING Or65b
3R	9502661	3R_9502661_SNP [dm3] 3R_13676939_SNP [dm6]	C	A	2.290e^-4	0.862	UTR_5_PRIME lkb1 UPSTREAM CG9588 INTRON lkb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	2741216	2R_2741216_SNP [dm3] 2R_6853711_SNP [dm6]	G	A	2.301e^-4	0.862	INTERGENIC
3L	6658912	3L_6658912_SNP [dm3] 3L_6665812_SNP [dm6]	T	C	2.301e^-4	0.862	UPSTREAM eIF4E-4 DOWNSTREAM CR45173 & 1 other INTERGENIC
3R	11211387	3R_11211387_SNP [dm3] 3R_15385665_SNP [dm6]	T	C	2.304e^-4	0.862	INTRON Rbp	TF binding site mE1_TFBS_chinmo
X	20587044	X_20587044_SNP [dm3] X_20716017_SNP [dm6]	A	G	2.305e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15799737	3R_15799737_SNP [dm3] 3R_19974015_SNP [dm6]	C	G	2.318e^-4	0.862	SYNONYMOUS_CODING CG31213 INTRON Hs6st
2R	4364791	2R_4364791_SNP [dm3] 2R_8477286_SNP [dm6]	A	G	2.321e^-4	0.862	INTRON mtt	transposable element FlyBase
3R	8684844	3R_8684844_SNP [dm3] 3R_12859122_SNP [dm6]	T	C	2.333e^-4	0.862	INTRON CG10126
3R	8670499	3R_8670499_SNP [dm3] 3R_12844777_SNP [dm6]	T	G	2.335e^-4	0.862	INTRON beat-Va
3L	16825435	3L_16825435_SNP [dm3] 3L_16832335_SNP [dm6]	C	A	2.338e^-4	0.862	INTERGENIC
3R	9562019	3R_9562019_SNP [dm3] 3R_13736297_SNP [dm6]	A	T	2.350e^-4	0.862	INTRON CG34383
2L	11199174	2L_11199174_SNP [dm3] 2L_11199174_SNP [dm6]	T	C	2.351e^-4	0.862	INTRON Ca-beta
3R	19805630	3R_19805630_SNP [dm3] 3R_23979908_SNP [dm6]	T	C	2.361e^-4	0.862	INTRON CG31140
3L	1595556	3L_1595556_SNP [dm3] 3L_1595556_SNP [dm6]	A	C	2.362e^-4	0.862	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8731683	3R_8731683_SNP [dm3] 3R_12905961_SNP [dm6]	T	C	2.370e^-4	0.862	INTERGENIC
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	2.380e^-4	0.862	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4208507	2L_4208507_SNP [dm3] 2L_4208507_SNP [dm6]	G	C	2.385e^-4	0.862	INTRON ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13931241	X_13931241_SNP [dm3] X_14037208_SNP [dm6]	T	C	2.387e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14107442	2R_14107442_SNP [dm3] 2R_18219937_SNP [dm6]	A	G	2.392e^-4	0.862	INTERGENIC
2L	11052146	2L_11052146_INS [dm3] 2L_11052146_INS [dm6]	G	GA	2.398e^-4	0.862	INTRON Samuel
X	13216227	X_13216227_SNP [dm3] X_13322194_SNP [dm6]	T	G	2.399e^-4	0.862	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8743066	3R_8743066_SNP [dm3] 3R_12917344_SNP [dm6]	C	T	2.400e^-4	0.862	INTRON beat-Vb
3L	4497387	3L_4497387_SNP [dm3] 3L_4497387_SNP [dm6]	A	G	2.402e^-4	0.862	INTRON CG13721	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8889278	3R_8889278_SNP [dm3] 3R_13063556_SNP [dm6]	C	T	2.403e^-4	0.862	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
X	5427322	X_5427322_SNP [dm3] X_5533289_SNP [dm6]	T	C	2.405e^-4	0.862	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14259865	3R_14259865_SNP [dm3] 3R_18434143_SNP [dm6]	A	T	2.431e^-4	0.862	INTRON fru	TF binding site mE1_TFBS_cad
3R	25850757	3R_25850757_SNP [dm3] 3R_30025035_SNP [dm6]	C	T	2.435e^-4	0.862	INTRON Axn
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	2.438e^-4	0.862	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	7583659	2L_7583659_SNP [dm3] 2L_7583659_SNP [dm6]	T	G	2.444e^-4	0.862	DOWNSTREAM Spn28B INTERGENIC
3R	16106508	3R_16106508_SNP [dm3] 3R_20280786_SNP [dm6]	T	C	2.449e^-4	0.862	INTRON cic	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	6584917	2L_6584917_SNP [dm3] 2L_6584917_SNP [dm6]	A	T	2.454e^-4	0.862	INTRON CG11319
3L	15447645	3L_15447645_SNP [dm3] 3L_15454545_SNP [dm6]	C	A	2.458e^-4	0.862	INTERGENIC
2R	14283427	2R_14283427_SNP [dm3] 2R_18395922_SNP [dm6]	T	G	2.458e^-4	0.862	DOWNSTREAM Idgf5 & 1 other INTERGENIC
3R	15993466	3R_15993466_SNP [dm3] 3R_20167744_SNP [dm6]	T	A	2.464e^-4	0.862	INTERGENIC
X	11422484	X_11422484_SNP [dm3] X_11528451_SNP [dm6]	C	T	2.465e^-4	0.862	INTRON Drak	TF binding site BDTNP1_TFBS_dl
3R	18750922	3R_18750922_SNP [dm3] 3R_22925200_SNP [dm6]	C	T	2.466e^-4	0.862	DOWNSTREAM CG6660 INTRON klg
X	20478564	X_20478564_DEL [dm3] X_20607537_DEL [dm6]	CC	C	2.476e^-4	0.862	INTRON RunxA	TF binding site mE1_TFBS_chinmo
X	19870950	X_19870950_SNP [dm3] X_19976917_SNP [dm6]	G	T	2.478e^-4	0.862	INTERGENIC
2L	8539830	2L_8539830_SNP [dm3] 2L_8539830_SNP [dm6]	C	T	2.487e^-4	0.862	INTRON CG17834
3R	9325078	3R_9325078_SNP [dm3] 3R_13499356_SNP [dm6]	T	C	2.506e^-4	0.862	INTERGENIC
2L	13841560	2L_13841560_SNP [dm3] 2L_13841560_SNP [dm6]	T	C	2.523e^-4	0.862	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	17414446	2L_17414446_SNP [dm3] 2L_17414446_SNP [dm6]	A	G	2.525e^-4	0.862	DOWNSTREAM CG15141 & 1 other INTRON Dif
3L	4812113	3L_4812113_SNP [dm3] 3L_4812113_SNP [dm6]	A	G	2.530e^-4	0.862	SYNONYMOUS_CODING Dhc64C INTRON Dhc64C
3R	17174165	3R_17174165_SNP [dm3] 3R_21348443_SNP [dm6]	T	A	2.541e^-4	0.862	NON_SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16748971	2L_16748971_SNP [dm3] 2L_16748971_SNP [dm6]	A	G	2.543e^-4	0.862	DOWNSTREAM CG17912 INTRON CG17912	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16427609	2R_16427609_SNP [dm3] 2R_20540104_SNP [dm6]	C	A	2.574e^-4	0.862	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6202307	X_6202307_SNP [dm3] X_6308274_SNP [dm6]	A	G	2.574e^-4	0.862	UPSTREAM CG15894 INTERGENIC
X	20588122	X_20588122_SNP [dm3] X_20717095_SNP [dm6]	T	A	2.583e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	1627577	2L_1627577_SNP [dm3] 2L_1627577_SNP [dm6]	T	C	2.586e^-4	0.862	INTERGENIC
2R	9412883	2R_9412883_SNP [dm3] 2R_13525378_SNP [dm6]	C	A	2.588e^-4	0.862	UTR_5_PRIME CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6781901	2R_6781901_SNP [dm3] 2R_10894396_SNP [dm6]	G	A	2.595e^-4	0.862	UTR_5_PRIME cag UPSTREAM CG12942 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8925994	3R_8925994_SNP [dm3] 3R_13100272_SNP [dm6]	C	T	2.596e^-4	0.862	INTRON timeout	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17881464	3L_17881464_SNP [dm3] 3L_17888364_SNP [dm6]	T	A	2.607e^-4	0.862	INTRON CG7402
3L	16836592	3L_16836592_SNP [dm3] 3L_16843492_SNP [dm6]	C	G	2.614e^-4	0.862	INTRON TSG101	TF binding site mE1_TFBS_sens
3L	16511918	3L_16511918_DEL [dm3] 3L_16518818_DEL [dm6]	TAT	T	2.617e^-4	0.862	INTRON CG43373
3R	17174481	3R_17174481_SNP [dm3] 3R_21348759_SNP [dm6]	C	T	2.624e^-4	0.862	UTR_5_PRIME CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8743274	3R_8743274_DEL [dm3] 3R_12917552_DEL [dm6]	TTGACCACCTGT...	T	2.632e^-4	0.862	INTRON beat-Vb
2L	21971439	2L_21971439_DEL [dm3] 2L_21971439_DEL [dm6]	CCCGTTGCTCG...	A	2.636e^-4	0.862	INTERGENIC
X	9923228	X_9923228_SNP [dm3] X_10029195_SNP [dm6]	C	T	2.641e^-4	0.862	INTRON Cht6
2R	19465046	2R_19465046_SNP [dm3] 2R_23577523_SNP [dm6]	T	A	2.646e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	7643314	3L_7643314_SNP [dm3] 3L_7650214_SNP [dm6]	C	G	2.650e^-4	0.862	UPSTREAM CG32373 & 1 other INTERGENIC
2L	15243655	2L_15243655_SNP [dm3] 2L_15243655_SNP [dm6]	T	C	2.651e^-4	0.862	INTRON ZnT35C
2L	21979881	2L_21979881_SNP [dm3] 2L_21979881_SNP [dm6]	G	A	2.655e^-4	0.862	INTERGENIC
2L	14548894	2L_14548894_SNP [dm3] 2L_14548894_SNP [dm6]	T	A	2.655e^-4	0.862	SYNONYMOUS_CODING CG4218
2L	797825	2L_797825_SNP [dm3] 2L_797825_SNP [dm6]	A	T	2.677e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18690003	2R_18690003_SNP [dm3] 2R_22802498_SNP [dm6]	G	A	2.678e^-4	0.862	DOWNSTREAM blw INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	24954614	3R_24954614_SNP [dm3] 3R_29128892_SNP [dm6]	A	T	2.679e^-4	0.862	DOWNSTREAM CG11880 INTRON dgt6	TF binding site mE1_TFBS_cad
3L	12875716	3L_12875716_SNP [dm3] 3L_12882616_SNP [dm6]	C	T	2.681e^-4	0.862	INTERGENIC
2L	8961614	2L_8961614_SNP [dm3] 2L_8961614_SNP [dm6]	A	T	2.681e^-4	0.862	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985	TF binding site mE1_TFBS_HSA
2R	7808785	2R_7808785_SNP [dm3] 2R_11921280_SNP [dm6]	A	T	2.684e^-4	0.862	INTERGENIC
3L	16817677	3L_16817677_SNP [dm3] 3L_16824577_SNP [dm6]	C	A	2.687e^-4	0.862	INTRON CG13024
3L	6819540	3L_6819540_SNP [dm3] 3L_6826440_SNP [dm6]	T	C	2.700e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7156621	2L_7156621_SNP [dm3] 2L_7156621_SNP [dm6]	A	G	2.706e^-4	0.862	SYNONYMOUS_CODING Pvf3
3L	11502401	3L_11502401_SNP [dm3] 3L_11509301_SNP [dm6]	T	G	2.708e^-4	0.862	UPSTREAM Sgs7 DOWNSTREAM CG33500 INTRON Sgs8	regulatory region FlyBase REDfly_CRMs
2R	6079366	2R_6079366_SNP [dm3] 2R_10191861_SNP [dm6]	C	G	2.714e^-4	0.862	INTRON KCNQ
3L	17878964	3L_17878964_INS [dm3] 3L_17885864_INS [dm6]	C	CA	2.716e^-4	0.862	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC
X	2177312	X_2177312_SNP [dm3] X_2283279_SNP [dm6]	T	G	2.727e^-4	0.862	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3R	17031982	3R_17031982_SNP [dm3] 3R_21206260_SNP [dm6]	G	A	2.729e^-4	0.862	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
X	20385850	X_20385850_SNP [dm3] X_20514823_SNP [dm6]	A	G	2.732e^-4	0.862	UTR_3_PRIME CG1812
2R	8587126	2R_8587126_SNP [dm3] 2R_12699621_SNP [dm6]	A	T	2.739e^-4	0.862	UPSTREAM wuc INTERGENIC
3R	18189422	3R_18189422_SNP [dm3] 3R_22363700_SNP [dm6]	T	C	2.741e^-4	0.862	SYNONYMOUS_CODING CG7071 UTR_3_PRIME Muted DOWNSTREAM CG5382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18441980	3R_18441980_SNP [dm3] 3R_22616258_SNP [dm6]	A	G	2.745e^-4	0.862	UPSTREAM CG31161 INTRON EF-G2
3R	15561080	3R_15561080_SNP [dm3] 3R_19735358_SNP [dm6]	A	C	2.749e^-4	0.862	INTRON GluClalpha
2L	18919023	2L_18919023_SNP [dm3] 2L_18919023_SNP [dm6]	G	A	2.758e^-4	0.862	INTRON ssp3
2R	19465049	2R_19465049_SNP [dm3] 2R_23577526_SNP [dm6]	C	A	2.769e^-4	0.862	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	12214308	2R_12214308_SNP [dm3] 2R_16326803_SNP [dm6]	T	A	2.772e^-4	0.862	SPLICE_SITE_REGION Vha44 INTRON Vha44
2L	18324750	2L_18324750_SNP [dm3] 2L_18324750_SNP [dm6]	C	G	2.773e^-4	0.862	INTRON Fas3
2R	6304649	2R_6304649_SNP [dm3] 2R_10417144_SNP [dm6]	C	T	2.774e^-4	0.862	UPSTREAM CG42732 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	12514527	X_12514527_SNP [dm3] X_12620494_SNP [dm6]	C	T	2.775e^-4	0.862	INTRON CG11085
3R	18733482	3R_18733482_SNP [dm3] 3R_22907760_SNP [dm6]	T	C	2.783e^-4	0.862	INTRON klg
3L	19377516	3L_19377516_SNP [dm3] 3L_19384416_SNP [dm6]	A	T	2.790e^-4	0.862	INTRON CG32206
2L	16803492	2L_16803492_SNP [dm3] 2L_16803492_SNP [dm6]	A	T	2.794e^-4	0.862	NON_SYNONYMOUS_CODING CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	16430687	2R_16430687_SNP [dm3] 2R_20543182_SNP [dm6]	A	T	2.796e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13810229	2L_13810229_SNP [dm3] 2L_13810229_SNP [dm6]	T	A	2.796e^-4	0.862	NON_SYNONYMOUS_CODING adat DOWNSTREAM CAH1	TF binding site mE1_TFBS_sens
2L	13815912	2L_13815912_SNP [dm3] 2L_13815912_SNP [dm6]	C	T	2.796e^-4	0.862	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15328195	X_15328195_SNP [dm3] X_15434162_SNP [dm6]	A	G	2.796e^-4	0.862	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1801325	3R_1801325_SNP [dm3] 3R_5975603_SNP [dm6]	G	T	2.801e^-4	0.862	UPSTREAM Obp83a DOWNSTREAM Obp83b INTERGENIC
3R	4928185	3R_4928185_SNP [dm3] 3R_9102463_SNP [dm6]	A	G	2.802e^-4	0.862	INTRON pum
2L	22048783	2L_22048783_SNP [dm3] 2L_22048783_SNP [dm6]	G	A	2.813e^-4	0.862	INTERGENIC	transposable element FlyBase
2R	3601290	2R_3601290_SNP [dm3] 2R_7713785_SNP [dm6]	A	T	2.820e^-4	0.862	SYNONYMOUS_CODING CG1942	TF binding site mE1_TFBS_cnc
2L	15902762	2L_15902762_SNP [dm3] 2L_15902762_SNP [dm6]	C	T	2.820e^-4	0.862	UPSTREAM CG31821 INTERGENIC
3R	13586998	3R_13586998_SNP [dm3] 3R_17761276_SNP [dm6]	A	C	2.820e^-4	0.862	INTRON TyrR
3L	15322825	3L_15322825_SNP [dm3] 3L_15329725_SNP [dm6]	G	A	2.826e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12341145	2R_12341145_SNP [dm3] 2R_16453640_SNP [dm6]	A	C	2.830e^-4	0.862	INTERGENIC
3R	8699748	3R_8699748_SNP [dm3] 3R_12874026_SNP [dm6]	C	G	2.835e^-4	0.862	INTERGENIC
2R	3608226	2R_3608226_SNP [dm3] 2R_7720721_SNP [dm6]	T	C	2.845e^-4	0.862	INTRON CG18812
3R	15561095	3R_15561095_SNP [dm3] 3R_19735373_SNP [dm6]	C	A	2.845e^-4	0.862	INTRON GluClalpha
2R	8109912	2R_8109912_SNP [dm3] 2R_12222407_SNP [dm6]	C	A	2.845e^-4	0.862	INTERGENIC
3R	10275301	3R_10275301_SNP [dm3] 3R_14449579_SNP [dm6]	G	T	2.850e^-4	0.862	INTRON cv-c
3R	8772127	3R_8772127_SNP [dm3] 3R_12946405_SNP [dm6]	A	G	2.870e^-4	0.862	INTERGENIC
2L	6584901	2L_6584901_SNP [dm3] 2L_6584901_SNP [dm6]	T	C	2.871e^-4	0.862	INTRON CG11319
3L	10738354	3L_10738354_SNP [dm3] 3L_10745254_SNP [dm6]	A	T	2.872e^-4	0.862	INTERGENIC
3R	18169021	3R_18169021_SNP [dm3] 3R_22343299_SNP [dm6]	A	T	2.877e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8852839	2L_8852839_SNP [dm3] 2L_8852839_SNP [dm6]	A	G	2.880e^-4	0.862	UPSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8888725	3R_8888725_SNP [dm3] 3R_13063003_SNP [dm6]	T	C	2.882e^-4	0.862	INTRON sim
2R	17653420	2R_17653420_SNP [dm3] 2R_21765915_SNP [dm6]	A	C	2.887e^-4	0.862	UPSTREAM CR43984 INTRON CG30395
2R	1319948	2R_1319948_SNP [dm3] 2R_5432443_SNP [dm6]	C	G	2.890e^-4	0.862	INTRON laccase2	transposable element FlyBase
2R	18552444	2R_18552444_SNP [dm3] 2R_22664939_SNP [dm6]	C	G	2.891e^-4	0.862	UPSTREAM CG42867 DOWNSTREAM CG4250 INTERGENIC
X	3917962	X_3917962_SNP [dm3] X_4023929_SNP [dm6]	G	C	2.904e^-4	0.862	INTERGENIC
2R	14130521	2R_14130521_DEL [dm3] 2R_18243016_DEL [dm6]	CA	C	2.907e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1959626	2L_1959626_SNP [dm3] 2L_1959626_SNP [dm6]	T	A	2.908e^-4	0.862	INTRON erm	TF binding site mE1_TFBS_chinmo
2R	16863147	2R_16863147_SNP [dm3] 2R_20975642_SNP [dm6]	A	G	2.910e^-4	0.862	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9538600	2L_9538600_SNP [dm3] 2L_9538600_SNP [dm6]	C	T	2.911e^-4	0.862	SYNONYMOUS_CODING Oatp30B
3L	6322919	3L_6322919_SNP [dm3] 3L_6329819_SNP [dm6]	T	A	2.914e^-4	0.862	UTR_3_PRIME CG13300 DOWNSTREAM Or65c
X	13376163	X_13376163_SNP [dm3] X_13482130_SNP [dm6]	A	C	2.916e^-4	0.862	INTRON Neto
3R	21448645	3R_21448645_SNP [dm3] 3R_25622923_SNP [dm6]	T	G	2.917e^-4	0.862	INTRON Npl4	TF binding site mE1_TFBS_sens
3R	18426875	3R_18426875_SNP [dm3] 3R_22601153_SNP [dm6]	C	T	2.923e^-4	0.862	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9089952	2R_9089952_SNP [dm3] 2R_13202447_SNP [dm6]	G	A	2.930e^-4	0.862	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad
3L	10189453	3L_10189453_SNP [dm3] 3L_10196353_SNP [dm6]	T	C	2.931e^-4	0.862	SYNONYMOUS_CODING ect	TF binding site mE1_TFBS_chinmo
3L	4812122	3L_4812122_SNP [dm3] 3L_4812122_SNP [dm6]	A	G	2.933e^-4	0.862	SYNONYMOUS_CODING Dhc64C INTRON Dhc64C
2R	16585248	2R_16585248_SNP [dm3] 2R_20697743_SNP [dm6]	C	T	2.936e^-4	0.862	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11421123	3R_11421123_SNP [dm3] 3R_15595401_SNP [dm6]	G	T	2.938e^-4	0.862	INTERGENIC
3R	10273710	3R_10273710_SNP [dm3] 3R_14447988_SNP [dm6]	T	C	2.941e^-4	0.862	INTRON cv-c
2L	15902709	2L_15902709_SNP [dm3] 2L_15902709_SNP [dm6]	T	A	2.947e^-4	0.862	UPSTREAM CG31821 INTERGENIC
3R	10275239	3R_10275239_SNP [dm3] 3R_14449517_SNP [dm6]	C	A	2.947e^-4	0.862	INTRON cv-c
2L	16162989	2L_16162989_SNP [dm3] 2L_16162989_SNP [dm6]	T	C	2.950e^-4	0.862	INTERGENIC
X	15903592	X_15903592_SNP [dm3] X_16009559_SNP [dm6]	G	C	2.953e^-4	0.862	NON_SYNONYMOUS_CODING Muc14A DOWNSTREAM CG12698
3R	8482294	3R_8482294_INS [dm3] 3R_12656572_INS [dm6]	C	CC	2.962e^-4	0.862	INTRON CG6225
2R	17402249	2R_17402249_DEL [dm3] 2R_21514744_DEL [dm6]	TT	T	2.964e^-4	0.862	UTR_3_PRIME MESK2 INTRON MESK2	TF binding site mE1_TFBS_Trl
3L	6546182	3L_6546182_SNP [dm3] 3L_6553082_SNP [dm6]	T	A	2.967e^-4	0.862	INTRON CG18769	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14259857	3R_14259857_SNP [dm3] 3R_18434135_SNP [dm6]	T	C	2.970e^-4	0.862	INTRON fru	TF binding site mE1_TFBS_cad
2L	13842391	2L_13842391_SNP [dm3] 2L_13842391_SNP [dm6]	G	T	2.971e^-4	0.862	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
X	9923376	X_9923376_INS [dm3] X_10029343_INS [dm6]	A	ATATA	2.973e^-4	0.862	INTRON Cht6
2R	7506818	2R_7506818_SNP [dm3] 2R_11619313_SNP [dm6]	A	T	2.973e^-4	0.862	UPSTREAM Egm DOWNSTREAM CG9005 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18478692	2R_18478692_SNP [dm3] 2R_22591187_SNP [dm6]	A	T	2.974e^-4	0.862	INTRON dnr1
2L	16757651	2L_16757651_SNP [dm3] 2L_16757651_SNP [dm6]	A	C	2.974e^-4	0.862	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
3L	12489635	3L_12489635_SNP [dm3] 3L_12496535_SNP [dm6]	G	A	2.975e^-4	0.862	INTRON CG10657
3R	9411956	3R_9411956_SNP [dm3] 3R_13586234_SNP [dm6]	A	T	2.976e^-4	0.862	INTERGENIC
2R	17334935	2R_17334935_SNP [dm3] 2R_21447430_SNP [dm6]	G	A	2.984e^-4	0.862	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
X	12698317	X_12698317_SNP [dm3] X_12804284_SNP [dm6]	A	G	2.997e^-4	0.862	DOWNSTREAM CG3775 INTRON Pde9
3R	8736086	3R_8736086_SNP [dm3] 3R_12910364_SNP [dm6]	G	A	2.998e^-4	0.862	SYNONYMOUS_CODING CG10909	TF binding site mE1_TFBS_sens
3R	25978210	3R_25978210_SNP [dm3] 3R_30152488_SNP [dm6]	G	A	3.000e^-4	0.862	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25795298	3R_25795298_SNP [dm3] 3R_29969576_SNP [dm6]	C	G	3.005e^-4	0.862	UPSTREAM TkR99D INTERGENIC
3L	16817611	3L_16817611_SNP [dm3] 3L_16824511_SNP [dm6]	A	G	3.010e^-4	0.862	INTRON CG13024
2R	17728364	2R_17728364_SNP [dm3] 2R_21840859_SNP [dm6]	C	G	3.010e^-4	0.862	INTERGENIC
2L	3947547	2L_3947547_DEL [dm3] 2L_3947547_DEL [dm6]	TCATTCAT	T	3.011e^-4	0.862	INTRON fred
2L	6585058	2L_6585058_SNP [dm3] 2L_6585058_SNP [dm6]	C	T	3.015e^-4	0.862	INTRON CG11319
3R	3449270	3R_3449270_INS [dm3] 3R_7623548_INS [dm6]	C	CGAGC	3.024e^-4	0.862	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16842449	3L_16842449_SNP [dm3] 3L_16849349_SNP [dm6]	T	C	3.025e^-4	0.862	INTRON CG9715	TF binding site mE1_TFBS_sens
X	2080936	X_2080936_SNP [dm3] X_2186903_SNP [dm6]	C	T	3.026e^-4	0.862	UTR_5_PRIME CG17777 UPSTREAM CG3457	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3311658	3R_3311658_SNP [dm3] 3R_7485936_SNP [dm6]	C	T	3.038e^-4	0.862	DOWNSTREAM alpha-Est10 INTERGENIC
2L	9418933	2L_9418933_SNP [dm3] 2L_9418933_SNP [dm6]	C	A	3.040e^-4	0.862	INTRON Mco1
3L	2656049	3L_2656049_SNP [dm3] 3L_2656049_SNP [dm6]	G	A	3.047e^-4	0.862	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
2R	19064735	2R_19064735_SNP [dm3] 2R_23177212_SNP [dm6]	T	C	3.050e^-4	0.862	INTRON CG34371
3L	6987901	3L_6987901_SNP [dm3] 3L_6994801_SNP [dm6]	T	C	3.054e^-4	0.862	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
2L	6584916	2L_6584916_SNP [dm3] 2L_6584916_SNP [dm6]	T	A	3.061e^-4	0.862	INTRON CG11319
2R	17728462	2R_17728462_SNP [dm3] 2R_21840957_SNP [dm6]	A	G	3.065e^-4	0.862	INTERGENIC
3R	15993457	3R_15993457_SNP [dm3] 3R_20167735_SNP [dm6]	A	T	3.068e^-4	0.862	INTERGENIC
2R	13184235	2R_13184235_SNP [dm3] 2R_17296730_SNP [dm6]	C	T	3.069e^-4	0.862	INTRON mbl
2R	5444637	2R_5444637_SNP [dm3] 2R_9557132_SNP [dm6]	T	C	3.075e^-4	0.862	INTERGENIC
X	4893941	X_4893941_SNP [dm3] X_4999908_SNP [dm6]	G	A	3.075e^-4	0.862	INTRON CR44833	regulatory region REDfly_CRMs
3R	23070775	3R_23070775_SNP [dm3] 3R_27245053_SNP [dm6]	T	C	3.076e^-4	0.862	UTR_5_PRIME CG18766 UPSTREAM CG18766 INTRON CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26074266	3R_26074266_SNP [dm3] 3R_30248544_SNP [dm6]	A	T	3.084e^-4	0.862	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16577519	2L_16577519_SNP [dm3] 2L_16577519_SNP [dm6]	T	C	3.086e^-4	0.862	INTRON CG42389
3R	15561128	3R_15561128_SNP [dm3] 3R_19735406_SNP [dm6]	C	T	3.087e^-4	0.862	INTRON GluClalpha
2L	11442714	2L_11442714_SNP [dm3] 2L_11442714_SNP [dm6]	T	A	3.096e^-4	0.862	INTRON salm
3R	3057218	3R_3057218_SNP [dm3] 3R_7231496_SNP [dm6]	A	T	3.096e^-4	0.862	INTRON CG14608
3L	6987781	3L_6987781_SNP [dm3] 3L_6994681_SNP [dm6]	A	T	3.103e^-4	0.862	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18189865	3R_18189865_SNP [dm3] 3R_22364143_SNP [dm6]	C	T	3.108e^-4	0.862	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
3L	12556492	3L_12556492_SNP [dm3] 3L_12563392_SNP [dm6]	A	T	3.111e^-4	0.862	INTRON sowah
3R	18583213	3R_18583213_SNP [dm3] 3R_22757491_SNP [dm6]	T	C	3.117e^-4	0.862	INTRON Usp12-46 & 1 other
2L	15194068	2L_15194068_SNP [dm3] 2L_15194068_SNP [dm6]	T	G	3.119e^-4	0.862	INTRON CG4168
2L	797235	2L_797235_SNP [dm3] 2L_797235_SNP [dm6]	G	A	3.124e^-4	0.862	INTERGENIC
3L	6924240	3L_6924240_INS [dm3] 3L_6931140_INS [dm6]	A	AGAAAGTTAA	3.129e^-4	0.862	UTR_3_PRIME CG45413 DOWNSTREAM CG45413
2R	12729818	2R_12729818_SNP [dm3] 2R_16842313_SNP [dm6]	A	C	3.130e^-4	0.862	DOWNSTREAM Ugt37c1 INTERGENIC
2R	13773102	2R_13773102_DEL [dm3] 2R_17885597_DEL [dm6]	AA	A	3.132e^-4	0.862	INTRON Elk
2L	16388668	2L_16388668_SNP [dm3] 2L_16388668_SNP [dm6]	T	C	3.138e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1212115	2R_1212115_SNP [dm3] 2R_5324610_SNP [dm6]	T	A	3.147e^-4	0.862	INTRON sxc
X	5941520	X_5941520_SNP [dm3] X_6047487_SNP [dm6]	G	T	3.151e^-4	0.862	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
X	20586835	X_20586835_SNP [dm3] X_20715808_SNP [dm6]	G	C	3.153e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14569106	2R_14569106_SNP [dm3] 2R_18681601_SNP [dm6]	G	A	3.168e^-4	0.862	NON_SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	3.172e^-4	0.862	INTRON Cad87A
2L	3327164	2L_3327164_SNP [dm3] 2L_3327164_SNP [dm6]	T	C	3.172e^-4	0.862	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	15183908	2L_15183908_SNP [dm3] 2L_15183908_SNP [dm6]	G	T	3.175e^-4	0.862	INTRON CG4168
X	17941243	X_17941243_SNP [dm3] X_18047210_SNP [dm6]	G	A	3.178e^-4	0.862	SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo
3L	5073331	3L_5073331_SNP [dm3] 3L_5073331_SNP [dm6]	G	A	3.183e^-4	0.862	INTRON Con
2R	12341159	2R_12341159_SNP [dm3] 2R_16453654_SNP [dm6]	T	C	3.185e^-4	0.862	INTERGENIC
3R	8625787	3R_8625787_SNP [dm3] 3R_12800065_SNP [dm6]	A	G	3.186e^-4	0.862	INTERGENIC
3L	17673368	3L_17673368_SNP [dm3] 3L_17680268_SNP [dm6]	T	A	3.188e^-4	0.862	INTRON CG34251
2R	19508734	2R_19508734_DEL [dm3] 2R_23621211_DEL [dm6]	TG	T	3.201e^-4	0.862	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16378861	2L_16378861_SNP [dm3] 2L_16378861_SNP [dm6]	T	C	3.205e^-4	0.862	INTERGENIC
2L	1540042	2L_1540042_SNP [dm3] 2L_1540042_SNP [dm6]	A	G	3.211e^-4	0.862	INTERGENIC
2R	15942751	2R_15942751_DEL [dm3] 2R_20055246_DEL [dm6]	CAAT	C	3.214e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	1366081	2R_1366081_SNP [dm3] 2R_5478576_SNP [dm6]	T	G	3.222e^-4	0.862	INTRON CG30440
2R	18296029	2R_18296029_SNP [dm3] 2R_22408524_SNP [dm6]	C	A	3.237e^-4	0.862	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13818222	2L_13818222_SNP [dm3] 2L_13818222_SNP [dm6]	G	T	3.242e^-4	0.862	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16753824	2L_16753824_SNP [dm3] 2L_16753824_SNP [dm6]	G	T	3.243e^-4	0.862	UPSTREAM yellow-b DOWNSTREAM CG17912 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	2867596	2L_2867596_SNP [dm3] 2L_2867596_SNP [dm6]	T	C	3.244e^-4	0.862	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7465003	3L_7465003_SNP [dm3] 3L_7471903_SNP [dm6]	G	A	3.245e^-4	0.862	SYNONYMOUS_CODING CG8541	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10260108	2R_10260108_DEL [dm3] 2R_14372603_DEL [dm6]	TT	T	3.249e^-4	0.862	UPSTREAM Obp50d INTRON Obp50b & 1 other	TF binding site mE1_TFBS_inv
2L	3894134	2L_3894134_SNP [dm3] 2L_3894134_SNP [dm6]	G	C	3.250e^-4	0.862	INTRON capu
2R	16427431	2R_16427431_SNP [dm3] 2R_20539926_SNP [dm6]	A	T	3.252e^-4	0.862	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7881960	2L_7881960_SNP [dm3] 2L_7881960_SNP [dm6]	C	A	3.254e^-4	0.862	INTERGENIC
2L	9946250	2L_9946250_SNP [dm3] 2L_9946250_SNP [dm6]	T	C	3.260e^-4	0.862	INTRON CG5853	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16473179	3R_16473179_SNP [dm3] 3R_20647457_SNP [dm6]	T	G	3.263e^-4	0.862	SYNONYMOUS_CODING GluRIIE
2R	7936263	2R_7936263_SNP [dm3] 2R_12048758_SNP [dm6]	T	G	3.264e^-4	0.862	INTRON Drep-1
3R	11421184	3R_11421184_SNP [dm3] 3R_15595462_SNP [dm6]	A	G	3.264e^-4	0.862	INTERGENIC
X	16081184	X_16081184_SNP [dm3] X_16187151_SNP [dm6]	A	G	3.270e^-4	0.862	INTERGENIC
2L	13822696	2L_13822696_SNP [dm3] 2L_13822696_SNP [dm6]	T	C	3.279e^-4	0.862	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8095801	3L_8095801_SNP [dm3] 3L_8102701_SNP [dm6]	G	T	3.285e^-4	0.862	INTRON Ect4
3R	8645464	3R_8645464_SNP [dm3] 3R_12819742_SNP [dm6]	G	A	3.286e^-4	0.862	INTERGENIC
2L	16380407	2L_16380407_SNP [dm3] 2L_16380407_SNP [dm6]	G	A	3.287e^-4	0.862	INTERGENIC
3L	17673337	3L_17673337_SNP [dm3] 3L_17680237_SNP [dm6]	C	T	3.298e^-4	0.862	INTRON CG34251
3R	8927714	3R_8927714_DEL [dm3] 3R_13101992_DEL [dm6]	ACCAATTACCCGA...	A	3.302e^-4	0.862	INTRON timeout
3L	13485015	3L_13485015_SNP [dm3] 3L_13491915_SNP [dm6]	T	C	3.303e^-4	0.862	INTRON Tgi
2R	3608216	2R_3608216_SNP [dm3] 2R_7720711_SNP [dm6]	G	A	3.312e^-4	0.862	INTRON CG18812
X	10970251	X_10970251_SNP [dm3] X_11076218_SNP [dm6]	G	A	3.329e^-4	0.862	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	10550276	3R_10550276_SNP [dm3] 3R_14724554_SNP [dm6]	A	G	3.331e^-4	0.862	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	2518740	3L_2518740_SNP [dm3] 3L_2518740_SNP [dm6]	G	A	3.331e^-4	0.862	DOWNSTREAM CR45170 INTRON Spn
3R	8443713	3R_8443713_DEL [dm3] 3R_12617991_DEL [dm6]	GG	G	3.337e^-4	0.862	DOWNSTREAM CR44942 INTERGENIC
2L	3327153	2L_3327153_SNP [dm3] 2L_3327153_SNP [dm6]	A	G	3.346e^-4	0.862	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	5813392	2L_5813392_SNP [dm3] 2L_5813392_SNP [dm6]	C	T	3.348e^-4	0.862	INTERGENIC
3R	23070937	3R_23070937_SNP [dm3] 3R_27245215_SNP [dm6]	G	A	3.358e^-4	0.862	UTR_5_PRIME CG18766 UPSTREAM CG18766	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	3.361e^-4	0.862	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	6822875	2L_6822875_SNP [dm3] 2L_6822875_SNP [dm6]	T	C	3.361e^-4	0.862	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	5161590	2L_5161590_SNP [dm3] 2L_5161590_SNP [dm6]	A	G	3.367e^-4	0.862	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13476433	2R_13476433_SNP [dm3] 2R_17588928_SNP [dm6]	T	C	3.367e^-4	0.862	INTRON RhoGAP54D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2678546	2L_2678546_SNP [dm3] 2L_2678546_SNP [dm6]	C	T	3.384e^-4	0.862	INTRON CG31690
3L	6822420	3L_6822420_SNP [dm3] 3L_6829320_SNP [dm6]	C	T	3.390e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16863146	2R_16863146_SNP [dm3] 2R_20975641_SNP [dm6]	A	C	3.396e^-4	0.862	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14028698	3R_14028698_SNP [dm3] 3R_18202976_SNP [dm6]	G	A	3.397e^-4	0.862	INTRON CG7985
2R	18552257	2R_18552257_SNP [dm3] 2R_22664752_SNP [dm6]	G	A	3.401e^-4	0.862	UPSTREAM CG42867 DOWNSTREAM CG4250 INTERGENIC
2L	13442308	2L_13442308_SNP [dm3] 2L_13442308_SNP [dm6]	T	A	3.401e^-4	0.862	INTRON CG42784 EXON CR45683
2L	12914348	2L_12914348_SNP [dm3] 2L_12914348_SNP [dm6]	C	T	3.417e^-4	0.862	SYNONYMOUS_CODING ACXC UTR_3_PRIME ACXC
2R	7808787	2R_7808787_SNP [dm3] 2R_11921282_SNP [dm6]	A	T	3.422e^-4	0.862	INTERGENIC
X	16285585	X_16285585_SNP [dm3] X_16391552_SNP [dm6]	T	G	3.423e^-4	0.862	UPSTREAM mei-41 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	968160	2L_968160_INS [dm3] 2L_968160_INS [dm6]	C	CC	3.424e^-4	0.862	INTERGENIC
3L	19009632	3L_19009632_SNP [dm3] 3L_19016532_SNP [dm6]	A	C	3.434e^-4	0.862	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21106534	3R_21106534_SNP [dm3] 3R_25280812_SNP [dm6]	T	A	3.436e^-4	0.862	UPSTREAM CG10514 & 1 other INTERGENIC
3R	21106535	3R_21106535_SNP [dm3] 3R_25280813_SNP [dm6]	G	T	3.436e^-4	0.862	UPSTREAM CG10514 & 1 other INTERGENIC
X	20593009	X_20593009_SNP [dm3] X_20721982_SNP [dm6]	G	A	3.437e^-4	0.862	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
X	13710355	X_13710355_SNP [dm3] X_13816322_SNP [dm6]	C	A	3.442e^-4	0.862	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13441691	2L_13441691_SNP [dm3] 2L_13441691_SNP [dm6]	G	C	3.446e^-4	0.862	INTRON CG42784 EXON CR45683
2L	7022020	2L_7022020_SNP [dm3] 2L_7022020_SNP [dm6]	G	A	3.448e^-4	0.862	NON_SYNONYMOUS_CODING Pcp INTRON ade3
2R	18620685	2R_18620685_SNP [dm3] 2R_22733180_SNP [dm6]	G	A	3.449e^-4	0.862	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20593912	X_20593912_SNP [dm3] X_20722885_SNP [dm6]	C	A	3.458e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	3.460e^-4	0.862	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11000310	3R_11000310_SNP [dm3] 3R_15174588_SNP [dm6]	C	T	3.466e^-4	0.862	DOWNSTREAM Mf INTRON Mf & 1 other
3R	13607731	3R_13607731_SNP [dm3] 3R_17782009_SNP [dm6]	A	T	3.470e^-4	0.862	INTRON CG43102
2R	3608220	2R_3608220_SNP [dm3] 2R_7720715_SNP [dm6]	G	T	3.475e^-4	0.862	INTRON CG18812
3L	7253558	3L_7253558_SNP [dm3] 3L_7260458_SNP [dm6]	T	G	3.477e^-4	0.862	INTRON CG14830
3R	10273673	3R_10273673_SNP [dm3] 3R_14447951_SNP [dm6]	T	C	3.481e^-4	0.862	INTRON cv-c
2L	15473943	2L_15473943_SNP [dm3] 2L_15473943_SNP [dm6]	A	C	3.482e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3R	8619534	3R_8619534_SNP [dm3] 3R_12793812_SNP [dm6]	C	T	3.482e^-4	0.862	INTERGENIC
3L	17905094	3L_17905094_SNP [dm3] 3L_17911994_SNP [dm6]	G	C	3.483e^-4	0.862	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16814632	2L_16814632_SNP [dm3] 2L_16814632_SNP [dm6]	T	A	3.497e^-4	0.862	SYNONYMOUS_CODING CG13272 INTRON CG13280
3R	15753503	3R_15753503_SNP [dm3] 3R_19927781_SNP [dm6]	T	A	3.500e^-4	0.862	INTRON CG4459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7053593	3R_7053593_SNP [dm3] 3R_11227871_SNP [dm6]	A	C	3.508e^-4	0.862	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	3.513e^-4	0.862	INTRON AGO3	transposable element FlyBase
2R	5811781	2R_5811781_SNP [dm3] 2R_9924276_SNP [dm6]	A	T	3.515e^-4	0.862	INTRON Mef2
3R	24954655	3R_24954655_SNP [dm3] 3R_29128933_SNP [dm6]	T	A	3.518e^-4	0.862	DOWNSTREAM CG11880 INTRON dgt6	TF binding site mE1_TFBS_cad
3L	11669875	3L_11669875_DEL [dm3] 3L_11676775_DEL [dm6]	TGCCATT	T	3.528e^-4	0.862	INTRON CG32085
3R	8864715	3R_8864715_SNP [dm3] 3R_13038993_SNP [dm6]	G	C	3.532e^-4	0.862	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	3.541e^-4	0.862	UPSTREAM CG10126 INTERGENIC
3R	6545421	3R_6545421_SNP [dm3] 3R_10719699_SNP [dm6]	T	A	3.542e^-4	0.862	INTERGENIC
3R	8895758	3R_8895758_DEL [dm3] 3R_13070036_DEL [dm6]	TA	T	3.544e^-4	0.862	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12729364	2R_12729364_SNP [dm3] 2R_16841859_SNP [dm6]	G	C	3.546e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6318279	X_6318279_SNP [dm3] X_6424246_SNP [dm6]	T	G	3.550e^-4	0.862	INTRON CG42340
2R	12729370	2R_12729370_SNP [dm3] 2R_16841865_SNP [dm6]	C	T	3.553e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4745616	3L_4745616_SNP [dm3] 3L_4745616_SNP [dm6]	A	T	3.557e^-4	0.862	DOWNSTREAM CR43882 INTRON RhoGEF64C
X	2242801	X_2242801_SNP [dm3] X_2348768_SNP [dm6]	T	C	3.568e^-4	0.862	SYNONYMOUS_CODING ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	17612758	3L_17612758_SNP [dm3] 3L_17619658_SNP [dm6]	C	T	3.568e^-4	0.862	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	13407979	2R_13407979_SNP [dm3] 2R_17520474_SNP [dm6]	T	C	3.570e^-4	0.862	SYNONYMOUS_CODING Patronin
3L	10388551	3L_10388551_SNP [dm3] 3L_10395451_SNP [dm6]	C	G	3.573e^-4	0.862	INTERGENIC
3R	19456069	3R_19456069_SNP [dm3] 3R_23630347_SNP [dm6]	C	A	3.578e^-4	0.862	INTRON CG31145
2R	12663120	2R_12663120_SNP [dm3] 2R_16775615_SNP [dm6]	A	T	3.579e^-4	0.862	UTR_3_PRIME Arp53D	TF binding site mE1_TFBS_HSA
2R	16457393	2R_16457393_SNP [dm3] 2R_20569888_SNP [dm6]	T	G	3.582e^-4	0.862	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20031094	2R_20031094_SNP [dm3] 2R_24143571_SNP [dm6]	G	A	3.585e^-4	0.862	INTRON Dat
2L	13842389	2L_13842389_SNP [dm3] 2L_13842389_SNP [dm6]	T	G	3.585e^-4	0.862	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	18174301	3R_18174301_SNP [dm3] 3R_22348579_SNP [dm6]	T	A	3.587e^-4	0.862	INTERGENIC
3L	10738344	3L_10738344_SNP [dm3] 3L_10745244_SNP [dm6]	A	C	3.588e^-4	0.862	INTERGENIC
2L	22038125	2L_22038125_SNP [dm3] 2L_22038125_SNP [dm6]	C	A	3.592e^-4	0.862	SYNONYMOUS_CODING CG41434
3R	24919056	3R_24919056_SNP [dm3] 3R_29093334_SNP [dm6]	G	T	3.598e^-4	0.862	INTRON CG11873
2R	18795552	2R_18795552_SNP [dm3] 2R_22908029_SNP [dm6]	G	A	3.608e^-4	0.862	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10054940	3R_10054940_SNP [dm3] 3R_14229218_SNP [dm6]	G	A	3.611e^-4	0.862	UPSTREAM CG9624 INTERGENIC
3L	6987531	3L_6987531_SNP [dm3] 3L_6994431_SNP [dm6]	A	T	3.614e^-4	0.862	UTR_3_PRIME bin	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5100440	3L_5100440_SNP [dm3] 3L_5100440_SNP [dm6]	G	C	3.618e^-4	0.862	UPSTREAM CR34047 INTERGENIC
X	9734277	X_9734277_SNP [dm3] X_9840244_SNP [dm6]	C	T	3.626e^-4	0.862	INTRON CG32698
2R	17436576	2R_17436576_SNP [dm3] 2R_21549071_SNP [dm6]	C	T	3.631e^-4	0.862	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
2R	2474174	2R_2474174_SNP [dm3] 2R_6586669_SNP [dm6]	C	A	3.632e^-4	0.862	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	12341104	2R_12341104_SNP [dm3] 2R_16453599_SNP [dm6]	G	A	3.636e^-4	0.862	INTERGENIC
3L	7463117	3L_7463117_SNP [dm3] 3L_7470017_SNP [dm6]	G	A	3.661e^-4	0.862	SYNONYMOUS_CODING CG8543
2L	13425579	2L_13425579_SNP [dm3] 2L_13425579_SNP [dm6]	T	A	3.662e^-4	0.862	INTRON CG42784
2R	8290116	2R_8290116_SNP [dm3] 2R_12402611_SNP [dm6]	C	T	3.669e^-4	0.862	INTRON Cpr49Ae
3R	13576235	3R_13576235_SNP [dm3] 3R_17750513_SNP [dm6]	C	A	3.669e^-4	0.862	UTR_3_PRIME TyrR
3R	25497943	3R_25497943_SNP [dm3] 3R_29672221_SNP [dm6]	G	A	3.671e^-4	0.862	UTR_3_PRIME Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	16378853	2L_16378853_SNP [dm3] 2L_16378853_SNP [dm6]	G	A	3.675e^-4	0.862	INTERGENIC
3L	1726727	3L_1726727_SNP [dm3] 3L_1726727_SNP [dm6]	A	C	3.678e^-4	0.862	INTRON drpr
2L	13822693	2L_13822693_SNP [dm3] 2L_13822693_SNP [dm6]	C	G	3.684e^-4	0.862	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18324693	2L_18324693_SNP [dm3] 2L_18324693_SNP [dm6]	C	A	3.686e^-4	0.862	INTRON Fas3
2L	11191577	2L_11191577_SNP [dm3] 2L_11191577_SNP [dm6]	T	C	3.698e^-4	0.862	INTRON Ca-beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12341161	2R_12341161_SNP [dm3] 2R_16453656_SNP [dm6]	T	G	3.712e^-4	0.862	INTERGENIC
3L	6989217	3L_6989217_SNP [dm3] 3L_6996117_SNP [dm6]	C	G	3.718e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
3R	19805372	3R_19805372_SNP [dm3] 3R_23979650_SNP [dm6]	A	T	3.720e^-4	0.862	INTRON CG31140
2L	2830919	2L_2830919_SNP [dm3] 2L_2830919_SNP [dm6]	C	T	3.724e^-4	0.862	UPSTREAM Duox INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17690820	2R_17690820_SNP [dm3] 2R_21803315_SNP [dm6]	C	T	3.727e^-4	0.862	UPSTREAM CR9284 INTERGENIC
2R	7808751	2R_7808751_SNP [dm3] 2R_11921246_SNP [dm6]	A	C	3.740e^-4	0.862	INTERGENIC
3R	21105186	3R_21105186_SNP [dm3] 3R_25279464_SNP [dm6]	T	A	3.744e^-4	0.862	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17690924	2R_17690924_SNP [dm3] 2R_21803419_SNP [dm6]	T	G	3.748e^-4	0.862	EXON CR9284
3R	21448627	3R_21448627_SNP [dm3] 3R_25622905_SNP [dm6]	A	T	3.748e^-4	0.862	INTRON Npl4	TF binding site mE1_TFBS_sens
X	15165996	X_15165996_INS [dm3] X_15271963_INS [dm6]	T	TTAGT	3.748e^-4	0.862	INTRON CG9106
3L	11745022	3L_11745022_SNP [dm3] 3L_11751922_SNP [dm6]	T	C	3.750e^-4	0.862	SYNONYMOUS_CODING Gr68a INTRON CG6024	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18332216	2L_18332216_SNP [dm3] 2L_18332216_SNP [dm6]	G	A	3.757e^-4	0.862	INTRON Fas3	TF binding site BDTNP1_TFBS_da
X	13549546	X_13549546_SNP [dm3] X_13655513_SNP [dm6]	G	T	3.759e^-4	0.862	INTRON NFAT
3L	12308723	3L_12308723_SNP [dm3] 3L_12315623_SNP [dm6]	G	C	3.761e^-4	0.862	INTERGENIC
3L	11011918	3L_11011918_SNP [dm3] 3L_11018818_SNP [dm6]	C	T	3.763e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8715801	3R_8715801_SNP [dm3] 3R_12890079_SNP [dm6]	C	T	3.766e^-4	0.862	INTERGENIC
3R	9941769	3R_9941769_SNP [dm3] 3R_14116047_SNP [dm6]	C	A	3.768e^-4	0.862	INTRON Kif19A	TF binding site mE1_TFBS_inv
3R	23125233	3R_23125233_SNP [dm3] 3R_27299511_SNP [dm6]	T	G	3.772e^-4	0.862	INTRON CG3339
2L	5562915	2L_5562915_SNP [dm3] 2L_5562915_SNP [dm6]	G	T	3.783e^-4	0.862	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	3.787e^-4	0.862	INTRON ckd
2L	8223281	2L_8223281_SNP [dm3] 2L_8223281_SNP [dm6]	G	C	3.788e^-4	0.862	SYNONYMOUS_CODING Pvr
2L	21971436	2L_21971436_INS [dm3] 2L_21971436_INS [dm6]	A	AATTTCTTTTTTA...	3.791e^-4	0.862	INTERGENIC
X	5367198	X_5367198_DEL [dm3] X_5473165_DEL [dm6]	TCTGTGTG	T	3.806e^-4	0.862	INTRON SPR
3R	22328096	3R_22328096_SNP [dm3] 3R_26502374_SNP [dm6]	G	C	3.810e^-4	0.862	INTRON plum
3R	20850098	3R_20850098_SNP [dm3] 3R_25024376_SNP [dm6]	C	T	3.811e^-4	0.862	SYNONYMOUS_CODING beta4GalT7 UPSTREAM Hr96 DOWNSTREAM CG11781	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	6766521	X_6766521_SNP [dm3] X_6872488_SNP [dm6]	C	A	3.827e^-4	0.862	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10751164	3R_10751164_SNP [dm3] 3R_14925442_SNP [dm6]	G	T	3.837e^-4	0.862	INTERGENIC
3R	23131192	3R_23131192_SNP [dm3] 3R_27305470_SNP [dm6]	A	G	3.856e^-4	0.862	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad
3R	15464535	3R_15464535_SNP [dm3] 3R_19638813_SNP [dm6]	T	G	3.862e^-4	0.862	INTRON subdued
3L	3791886	3L_3791886_SNP [dm3] 3L_3791886_SNP [dm6]	A	G	3.864e^-4	0.862	DOWNSTREAM CG32266 INTRON CG32264
2R	18533793	2R_18533793_SNP [dm3] 2R_22646288_SNP [dm6]	A	G	3.872e^-4	0.862	UTR_5_PRIME CG2852 DOWNSTREAM CG30195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	18324697	2L_18324697_SNP [dm3] 2L_18324697_SNP [dm6]	T	A	3.873e^-4	0.862	INTRON Fas3
2R	6082519	2R_6082519_INS [dm3] 2R_10195014_INS [dm6]	A	ATTAGA	3.877e^-4	0.862	INTERGENIC
2R	12138821	2R_12138821_DEL [dm3] 2R_16251316_DEL [dm6]	AC	A	3.879e^-4	0.862	INTRON CngA
3L	14608990	3L_14608990_SNP [dm3] 3L_14615890_SNP [dm6]	A	G	3.881e^-4	0.862	INTRON shd
2R	17572183	2R_17572183_SNP [dm3] 2R_21684678_SNP [dm6]	A	C	3.882e^-4	0.862	UPSTREAM CG10306 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7935591	2R_7935591_SNP [dm3] 2R_12048086_SNP [dm6]	C	T	3.883e^-4	0.862	SYNONYMOUS_CODING Drep-1
2L	102241	2L_102241_INS [dm3] 2L_102241_INS [dm6]	T	TGT	3.883e^-4	0.862	UPSTREAM CG11377 DOWNSTREAM Zir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	14752023	X_14752023_SNP [dm3] X_14857990_SNP [dm6]	T	C	3.885e^-4	0.862	INTRON Flo2
X	8841681	X_8841681_SNP [dm3] X_8947648_SNP [dm6]	T	C	3.887e^-4	0.862	INTRON rdgA
3R	5980259	3R_5980259_SNP [dm3] 3R_10154537_SNP [dm6]	T	A	3.887e^-4	0.862	INTRON Invadolysin
3R	18591109	3R_18591109_SNP [dm3] 3R_22765387_SNP [dm6]	C	G	3.891e^-4	0.862	NON_SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8619533	3R_8619533_SNP [dm3] 3R_12793811_SNP [dm6]	C	T	3.893e^-4	0.862	INTERGENIC
3R	23073010	3R_23073010_SNP [dm3] 3R_27247288_SNP [dm6]	A	G	3.897e^-4	0.862	SYNONYMOUS_CODING CG5984 DOWNSTREAM CG5987	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20588003	X_20588003_SNP [dm3] X_20716976_SNP [dm6]	C	T	3.902e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	7426369	3L_7426369_SNP [dm3] 3L_7433269_SNP [dm6]	A	T	3.904e^-4	0.862	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	8731689	3R_8731689_SNP [dm3] 3R_12905967_SNP [dm6]	C	T	3.913e^-4	0.862	INTERGENIC
2R	14044706	2R_14044706_SNP [dm3] 2R_18157201_SNP [dm6]	A	G	3.920e^-4	0.862	UPSTREAM lolal INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6100784	3R_6100784_SNP [dm3] 3R_10275062_SNP [dm6]	A	G	3.921e^-4	0.862	INTRON CG43143
2R	7936273	2R_7936273_SNP [dm3] 2R_12048768_SNP [dm6]	T	A	3.934e^-4	0.862	INTRON Drep-1
X	16285340	X_16285340_SNP [dm3] X_16391307_SNP [dm6]	T	C	3.939e^-4	0.862	SYNONYMOUS_CODING TH1 UPSTREAM mei-41	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	3.949e^-4	0.862	INTERGENIC
3R	8720130	3R_8720130_SNP [dm3] 3R_12894408_SNP [dm6]	T	A	3.955e^-4	0.862	SPLICE_SITE_ACCEPTOR CR33929 INTRON CR33929
3L	3484358	3L_3484358_SNP [dm3] 3L_3484358_SNP [dm6]	C	T	3.959e^-4	0.862	NON_SYNONYMOUS_CODING CG43074 INTRON CG42324
3R	10112465	3R_10112465_SNP [dm3] 3R_14286743_SNP [dm6]	T	A	3.976e^-4	0.862	UTR_5_PRIME trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17734017	2L_17734017_SNP [dm3] 2L_17734017_SNP [dm6]	C	A	3.976e^-4	0.862	INTRON CadN
X	3780642	X_3780642_SNP [dm3] X_3886609_SNP [dm6]	G	T	3.976e^-4	0.862	INTRON CG15239
3R	6603721	3R_6603721_SNP [dm3] 3R_10777999_SNP [dm6]	G	T	3.977e^-4	0.862	UPSTREAM CG45076 & 2 others INTERGENIC
2L	3887588	2L_3887588_SNP [dm3] 2L_3887588_SNP [dm6]	C	T	3.979e^-4	0.862	SYNONYMOUS_CODING capu INTRON capu
3L	7643378	3L_7643378_DEL [dm3] 3L_7650278_DEL [dm6]	ATAGTA	A	3.982e^-4	0.862	UPSTREAM CG32373 & 1 other INTERGENIC
3L	5942461	3L_5942461_SNP [dm3] 3L_5949361_SNP [dm6]	C	G	3.984e^-4	0.862	INTRON CG33993
3L	6987831	3L_6987831_SNP [dm3] 3L_6994731_SNP [dm6]	T	A	3.985e^-4	0.862	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	16868214	X_16868214_SNP [dm3] X_16974181_SNP [dm6]	T	C	3.986e^-4	0.862	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	3331361	2L_3331361_SNP [dm3] 2L_3331361_SNP [dm6]	G	T	3.997e^-4	0.862	INTRON CG3285
2L	16388739	2L_16388739_SNP [dm3] 2L_16388739_SNP [dm6]	T	G	4.003e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8624455	2L_8624455_SNP [dm3] 2L_8624455_SNP [dm6]	G	A	4.004e^-4	0.862	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	8926260	3R_8926260_SNP [dm3] 3R_13100538_SNP [dm6]	T	A	4.016e^-4	0.862	INTRON timeout
2L	9373854	2L_9373854_SNP [dm3] 2L_9373854_SNP [dm6]	T	C	4.017e^-4	0.862	INTRON Shawl EXON CR43865	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22024466	2L_22024466_SNP [dm3] 2L_22024466_SNP [dm6]	T	A	4.019e^-4	0.862	UTR_3_PRIME tio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15002025	3R_15002025_SNP [dm3] 3R_19176303_SNP [dm6]	T	G	4.021e^-4	0.862	UPSTREAM CG14282 INTERGENIC
X	20592895	X_20592895_SNP [dm3] X_20721868_SNP [dm6]	A	T	4.024e^-4	0.862	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6959170	3R_6959170_SNP [dm3] 3R_11133448_SNP [dm6]	C	T	4.025e^-4	0.862	INTERGENIC
2R	19479727	2R_19479727_SNP [dm3] 2R_23592204_SNP [dm6]	T	C	4.039e^-4	0.862	INTRON apt
2R	12729314	2R_12729314_SNP [dm3] 2R_16841809_SNP [dm6]	C	A	4.040e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17815507	3L_17815507_SNP [dm3] 3L_17822407_SNP [dm6]	A	T	4.047e^-4	0.862	UPSTREAM Grd INTRON Ir75c
2L	12912058	2L_12912058_SNP [dm3] 2L_12912058_SNP [dm6]	C	T	4.051e^-4	0.862	UPSTREAM ACXC INTERGENIC
3R	17388650	3R_17388650_SNP [dm3] 3R_21562928_SNP [dm6]	G	A	4.058e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12729771	2R_12729771_SNP [dm3] 2R_16842266_SNP [dm6]	C	A	4.061e^-4	0.862	INTERGENIC
3L	15613465	3L_15613465_SNP [dm3] 3L_15620365_SNP [dm6]	C	T	4.072e^-4	0.862	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22025114	2L_22025114_SNP [dm3] 2L_22025114_SNP [dm6]	G	A	4.075e^-4	0.862	UTR_3_PRIME tio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	13216230	X_13216230_SNP [dm3] X_13322197_SNP [dm6]	C	A	4.084e^-4	0.862	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7600359	3L_7600359_SNP [dm3] 3L_7607259_SNP [dm6]	T	A	4.088e^-4	0.862	INTRON CG33275
2L	15194067	2L_15194067_SNP [dm3] 2L_15194067_SNP [dm6]	C	A	4.096e^-4	0.862	INTRON CG4168
3R	6359099	3R_6359099_SNP [dm3] 3R_10533377_SNP [dm6]	A	G	4.104e^-4	0.862	INTRON hth
2L	10818821	2L_10818821_SNP [dm3] 2L_10818821_SNP [dm6]	A	T	4.114e^-4	0.862	UPSTREAM CG6508 INTRON Nos
2R	13184086	2R_13184086_SNP [dm3] 2R_17296581_SNP [dm6]	T	C	4.115e^-4	0.862	INTRON mbl
3L	12988145	3L_12988145_SNP [dm3] 3L_12995045_SNP [dm6]	C	G	4.118e^-4	0.862	UPSTREAM CG11262 INTERGENIC
3R	8926243	3R_8926243_SNP [dm3] 3R_13100521_SNP [dm6]	G	T	4.121e^-4	0.862	INTRON timeout	TF binding site mE1_TFBS_HSA
3L	6987902	3L_6987902_SNP [dm3] 3L_6994802_SNP [dm6]	A	T	4.121e^-4	0.862	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15697526	2R_15697526_SNP [dm3] 2R_19810021_SNP [dm6]	A	G	4.129e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	19609197	3R_19609197_SNP [dm3] 3R_23783475_SNP [dm6]	G	C	4.129e^-4	0.862	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	7742204	3R_7742204_DEL [dm3] 3R_11916482_DEL [dm6]	CCAAATATTTATTGGCAAGG...	C	4.135e^-4	0.862	INTRON Cad87A
2L	7152430	2L_7152430_SNP [dm3] 2L_7152430_SNP [dm6]	G	T	4.135e^-4	0.862	INTRON Pvf3
2R	13186382	2R_13186382_DEL [dm3] 2R_17298877_DEL [dm6]	AA	T	4.138e^-4	0.862	INTRON mbl
X	2408196	X_2408196_SNP [dm3] X_2514163_SNP [dm6]	G	T	4.138e^-4	0.862	INTRON trol
3R	21018745	3R_21018745_SNP [dm3] 3R_25193023_SNP [dm6]	C	G	4.141e^-4	0.862	DOWNSTREAM dan INTRON lobo
2R	18696372	2R_18696372_SNP [dm3] 2R_22808867_SNP [dm6]	G	A	4.141e^-4	0.862	NON_SYNONYMOUS_CODING stl
X	12934984	X_12934984_SNP [dm3] X_13040951_SNP [dm6]	T	C	4.142e^-4	0.862	INTRON rad
2L	4065306	2L_4065306_SNP [dm3] 2L_4065306_SNP [dm6]	A	T	4.142e^-4	0.862	INTRON ed
3L	9500053	3L_9500053_SNP [dm3] 3L_9506953_SNP [dm6]	C	A	4.150e^-4	0.862	UTR_3_PRIME CG3408
3R	8645039	3R_8645039_INS [dm3] 3R_12819317_INS [dm6]	C	CCTAAAGCC	4.150e^-4	0.862	INTERGENIC
2R	10004091	2R_10004091_SNP [dm3] 2R_14116586_SNP [dm6]	G	A	4.152e^-4	0.862	INTRON Prosap
2L	14300258	2L_14300258_SNP [dm3] 2L_14300258_SNP [dm6]	C	T	4.153e^-4	0.862	UPSTREAM wb INTRON wb
3R	18424584	3R_18424584_SNP [dm3] 3R_22598862_SNP [dm6]	G	T	4.155e^-4	0.862	INTRON Efa6	TF binding site mE1_TFBS_Trl
3L	6322233	3L_6322233_SNP [dm3] 3L_6329133_SNP [dm6]	G	C	4.160e^-4	0.862	DOWNSTREAM CG13300 & 1 other INTERGENIC
3L	19655694	3L_19655694_SNP [dm3] 3L_19662594_SNP [dm6]	G	T	4.167e^-4	0.862	INTRON tey	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	4.171e^-4	0.862	INTRON sNPF
2R	1212228	2R_1212228_SNP [dm3] 2R_5324723_SNP [dm6]	C	G	4.177e^-4	0.862	INTRON sxc	transposable element FlyBase
3R	13416379	3R_13416379_SNP [dm3] 3R_17590657_SNP [dm6]	A	C	4.177e^-4	0.862	INTERGENIC
3L	15304197	3L_15304197_SNP [dm3] 3L_15311097_SNP [dm6]	A	G	4.177e^-4	0.862	UTR_3_PRIME CG7255
3R	19982321	3R_19982321_SNP [dm3] 3R_24156599_SNP [dm6]	G	T	4.180e^-4	0.862	INTRON Myo95E
3L	14645765	3L_14645765_SNP [dm3] 3L_14652665_SNP [dm6]	T	G	4.201e^-4	0.862	INTRON dlp
X	17496946	X_17496946_SNP [dm3] X_17602913_SNP [dm6]	A	G	4.214e^-4	0.862	SYNONYMOUS_CODING X11L
3R	24816307	3R_24816307_SNP [dm3] 3R_28990585_SNP [dm6]	C	T	4.214e^-4	0.862	INTERGENIC
2R	3600561	2R_3600561_SNP [dm3] 2R_7713056_SNP [dm6]	G	A	4.224e^-4	0.862	SPLICE_SITE_REGION CG1942 INTRON CG1942	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18490632	3R_18490632_SNP [dm3] 3R_22664910_SNP [dm6]	T	C	4.225e^-4	0.862	SYNONYMOUS_CODING CG45058 UTR_5_PRIME CG45058	TF binding site mE1_TFBS_chinmo
2L	3901556	2L_3901556_SNP [dm3] 2L_3901556_SNP [dm6]	T	C	4.244e^-4	0.862	INTRON capu
X	5756511	X_5756511_SNP [dm3] X_5862478_SNP [dm6]	T	A	4.247e^-4	0.862	INTERGENIC
3L	16817620	3L_16817620_SNP [dm3] 3L_16824520_SNP [dm6]	C	T	4.254e^-4	0.862	INTRON CG13024
2R	8053919	2R_8053919_SNP [dm3] 2R_12166414_SNP [dm6]	T	A	4.260e^-4	0.862	UTR_3_PRIME Oda UPSTREAM CG34232 DOWNSTREAM Oda
2L	10820405	2L_10820405_SNP [dm3] 2L_10820405_SNP [dm6]	T	C	4.267e^-4	0.862	UTR_3_PRIME CG6508 UPSTREAM CG17134 INTRON Nos
X	20587356	X_20587356_SNP [dm3] X_20716329_SNP [dm6]	A	T	4.270e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12059708	X_12059708_SNP [dm3] X_12165675_SNP [dm6]	A	G	4.274e^-4	0.862	INTRON Ten-a
2L	2617017	2L_2617017_SNP [dm3] 2L_2617017_SNP [dm6]	G	C	4.275e^-4	0.862	INTERGENIC
2R	16457435	2R_16457435_SNP [dm3] 2R_20569930_SNP [dm6]	C	A	4.285e^-4	0.862	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15449313	3L_15449313_SNP [dm3] 3L_15456213_SNP [dm6]	C	T	4.286e^-4	0.862	INTERGENIC
2L	12884326	2L_12884326_SNP [dm3] 2L_12884326_SNP [dm6]	C	G	4.287e^-4	0.862	INTERGENIC
3R	8720684	3R_8720684_SNP [dm3] 3R_12894962_SNP [dm6]	A	T	4.288e^-4	0.862	UPSTREAM CR33929 INTERGENIC
3L	5316703	3L_5316703_SNP [dm3] 3L_5323603_SNP [dm6]	A	T	4.289e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13045287	3L_13045287_SNP [dm3] 3L_13052187_SNP [dm6]	T	A	4.296e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15697530	2R_15697530_SNP [dm3] 2R_19810025_SNP [dm6]	T	C	4.300e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	1220182	2R_1220182_SNP [dm3] 2R_5332677_SNP [dm6]	C	T	4.304e^-4	0.862	INTERGENIC
2L	1868936	2L_1868936_SNP [dm3] 2L_1868936_SNP [dm6]	G	C	4.305e^-4	0.862	UPSTREAM CG7295 INTRON CG31663
2L	11147672	2L_11147672_SNP [dm3] 2L_11147672_SNP [dm6]	C	T	4.307e^-4	0.862	INTRON Gyc32E
3L	7597034	3L_7597034_SNP [dm3] 3L_7603934_SNP [dm6]	C	T	4.308e^-4	0.862	NON_SYNONYMOUS_CODING CG33275
2L	16237106	2L_16237106_SNP [dm3] 2L_16237106_SNP [dm6]	A	C	4.309e^-4	0.862	INTRON CG42817
2L	15218775	2L_15218775_SNP [dm3] 2L_15218775_SNP [dm6]	A	T	4.311e^-4	0.862	INTERGENIC
3R	26082767	3R_26082767_SNP [dm3] 3R_30257045_SNP [dm6]	C	A	4.315e^-4	0.862	INTERGENIC
2R	12729256	2R_12729256_SNP [dm3] 2R_16841751_SNP [dm6]	A	T	4.316e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20592145	X_20592145_SNP [dm3] X_20721118_SNP [dm6]	T	C	4.317e^-4	0.862	INTERGENIC
X	9923217	X_9923217_SNP [dm3] X_10029184_SNP [dm6]	G	T	4.323e^-4	0.862	INTRON Cht6
2R	12568564	2R_12568564_SNP [dm3] 2R_16681059_SNP [dm6]	G	C	4.324e^-4	0.862	SYNONYMOUS_CODING CG30463
3R	23073130	3R_23073130_SNP [dm3] 3R_27247408_SNP [dm6]	A	G	4.327e^-4	0.862	SYNONYMOUS_CODING CG5984 DOWNSTREAM CG5987	TF binding site mE1_TFBS_chinmo
3L	15606343	3L_15606343_SNP [dm3] 3L_15613243_SNP [dm6]	A	T	4.329e^-4	0.862	UTR_3_PRIME comm3 UPSTREAM CG13449
X	8841832	X_8841832_SNP [dm3] X_8947799_SNP [dm6]	G	A	4.329e^-4	0.862	INTRON rdgA
3R	10276762	3R_10276762_SNP [dm3] 3R_14451040_SNP [dm6]	G	T	4.333e^-4	0.862	INTRON cv-c
2L	13154278	2L_13154278_INS [dm3] 2L_13154278_INS [dm6]	T	TATAT	4.338e^-4	0.862	INTERGENIC
X	10023412	X_10023412_INS [dm3] X_10129379_INS [dm6]	A	AAAATGT	4.346e^-4	0.862	INTRON CR44894 & 1 other
X	10023414	X_10023414_DEL [dm3] X_10129381_DEL [dm6]	AGTAGT	A	4.346e^-4	0.862	INTRON CR44894 & 1 other
2L	13442804	2L_13442804_SNP [dm3] 2L_13442804_SNP [dm6]	T	C	4.356e^-4	0.862	UPSTREAM CR45683 INTRON CG42784	TF binding site mE1_TFBS_cad
2R	19208991	2R_19208991_SNP [dm3] 2R_23321468_SNP [dm6]	C	A	4.357e^-4	0.862	DOWNSTREAM CG30416 INTERGENIC
3R	21856574	3R_21856574_SNP [dm3] 3R_26030852_SNP [dm6]	G	C	4.360e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19656033	3L_19656033_SNP [dm3] 3L_19662933_SNP [dm6]	G	A	4.361e^-4	0.862	INTRON tey	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21105321	3R_21105321_SNP [dm3] 3R_25279599_SNP [dm6]	C	G	4.364e^-4	0.862	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26377874	3R_26377874_SNP [dm3] 3R_30552152_SNP [dm6]	C	A	4.368e^-4	0.862	INTRON tmod
3R	10945301	3R_10945301_SNP [dm3] 3R_15119579_SNP [dm6]	T	G	4.373e^-4	0.862	INTRON CG42788
X	12594343	X_12594343_SNP [dm3] X_12700310_SNP [dm6]	A	G	4.391e^-4	0.862	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16388730	2L_16388730_SNP [dm3] 2L_16388730_SNP [dm6]	A	C	4.401e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15322821	3L_15322821_SNP [dm3] 3L_15329721_SNP [dm6]	A	G	4.408e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23071265	3R_23071265_SNP [dm3] 3R_27245543_SNP [dm6]	C	G	4.411e^-4	0.862	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14576847	2R_14576847_SNP [dm3] 2R_18689342_SNP [dm6]	T	A	4.412e^-4	0.862	DOWNSTREAM CG42855 INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3946272	3L_3946272_INS [dm3] 3L_3946272_INS [dm6]	A	AA	4.412e^-4	0.862	UTR_3_PRIME CG14982	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15200253	2L_15200253_SNP [dm3] 2L_15200253_SNP [dm6]	G	C	4.413e^-4	0.862	UTR_5_PRIME CG4168
2L	15200254	2L_15200254_DEL [dm3] 2L_15200254_DEL [dm6]	GTATCATAA	G	4.413e^-4	0.862	UTR_5_PRIME CG4168
2L	13445851	2L_13445851_SNP [dm3] 2L_13445851_SNP [dm6]	C	T	4.417e^-4	0.862	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	9490803	X_9490803_SNP [dm3] X_9596770_SNP [dm6]	T	A	4.423e^-4	0.862	INTERGENIC
2R	7826769	2R_7826769_SNP [dm3] 2R_11939264_SNP [dm6]	C	T	4.423e^-4	0.862	UPSTREAM CG13188 INTERGENIC
3R	26074282	3R_26074282_SNP [dm3] 3R_30248560_SNP [dm6]	A	G	4.430e^-4	0.862	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16473173	3R_16473173_SNP [dm3] 3R_20647451_SNP [dm6]	G	A	4.430e^-4	0.862	SYNONYMOUS_CODING GluRIIE
3R	21716101	3R_21716101_SNP [dm3] 3R_25890379_SNP [dm6]	T	G	4.438e^-4	0.862	INTRON Lnk
2L	3991618	2L_3991618_SNP [dm3] 2L_3991618_SNP [dm6]	C	T	4.442e^-4	0.862	UTR_5_PRIME fred	TF binding site mE1_TFBS_Trl
3R	8896459	3R_8896459_SNP [dm3] 3R_13070737_SNP [dm6]	C	T	4.442e^-4	0.862	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18566894	2R_18566894_SNP [dm3] 2R_22679389_SNP [dm6]	A	C	4.443e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24817527	3R_24817527_SNP [dm3] 3R_28991805_SNP [dm6]	A	G	4.451e^-4	0.862	INTERGENIC
X	2523449	X_2523449_SNP [dm3] X_2629416_SNP [dm6]	T	A	4.460e^-4	0.862	SPLICE_SITE_REGION PI4KIIIalpha INTRON PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7495123	2L_7495123_SNP [dm3] 2L_7495123_SNP [dm6]	G	T	4.461e^-4	0.862	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13825624	2L_13825624_SNP [dm3] 2L_13825624_SNP [dm6]	C	A	4.462e^-4	0.862	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	6318238	X_6318238_SNP [dm3] X_6424205_SNP [dm6]	A	T	4.462e^-4	0.862	INTRON CG42340
3R	8926266	3R_8926266_SNP [dm3] 3R_13100544_SNP [dm6]	T	A	4.463e^-4	0.862	INTRON timeout
3L	15777536	3L_15777536_SNP [dm3] 3L_15784436_SNP [dm6]	T	A	4.465e^-4	0.862	INTERGENIC
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	4.466e^-4	0.862	INTRON mbl
3R	7746981	3R_7746981_SNP [dm3] 3R_11921259_SNP [dm6]	C	T	4.468e^-4	0.862	INTRON Cad87A
2L	3453702	2L_3453702_SNP [dm3] 2L_3453702_SNP [dm6]	G	C	4.478e^-4	0.862	UTR_3_PRIME CG12795 & 1 other
2R	19029470	2R_19029470_SNP [dm3] 2R_23141947_SNP [dm6]	A	T	4.480e^-4	0.862	UPSTREAM Klp59D INTERGENIC
3R	21984728	3R_21984728_SNP [dm3] 3R_26159006_SNP [dm6]	G	A	4.485e^-4	0.862	INTERGENIC
3L	19024383	3L_19024383_SNP [dm3] 3L_19031283_SNP [dm6]	C	G	4.491e^-4	0.862	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20589151	X_20589151_SNP [dm3] X_20718124_SNP [dm6]	T	C	4.491e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20030487	2R_20030487_SNP [dm3] 2R_24142964_SNP [dm6]	G	A	4.495e^-4	0.862	INTRON Dat
2L	856878	2L_856878_SNP [dm3] 2L_856878_SNP [dm6]	T	A	4.507e^-4	0.862	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad
3R	20371322	3R_20371322_SNP [dm3] 3R_24545600_SNP [dm6]	G	C	4.508e^-4	0.862	INTRON Esyt2	TF binding site mE1_TFBS_bab1
3L	3735862	3L_3735862_SNP [dm3] 3L_3735862_SNP [dm6]	T	G	4.508e^-4	0.862	INTRON CG32264
X	18316209	X_18316209_SNP [dm3] X_18422176_SNP [dm6]	T	C	4.512e^-4	0.862	UPSTREAM CG42323 INTERGENIC
3R	10550391	3R_10550391_SNP [dm3] 3R_14724669_SNP [dm6]	C	T	4.513e^-4	0.862	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	9203579	2R_9203579_SNP [dm3] 2R_13316074_SNP [dm6]	T	C	4.514e^-4	0.862	INTERGENIC
2R	8052522	2R_8052522_SNP [dm3] 2R_12165017_SNP [dm6]	C	A	4.528e^-4	0.862	UTR_3_PRIME CG34232 DOWNSTREAM CG13177	TF binding site mE1_TFBS_inv
3L	3260995	3L_3260995_SNP [dm3] 3L_3260995_SNP [dm6]	C	T	4.533e^-4	0.862	INTRON ckd
3R	14295963	3R_14295963_SNP [dm3] 3R_18470241_SNP [dm6]	T	C	4.535e^-4	0.862	INTRON fru
X	2176660	X_2176660_SNP [dm3] X_2282627_SNP [dm6]	T	G	4.539e^-4	0.862	INTRON CG2865	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14463787	2L_14463787_SNP [dm3] 2L_14463787_SNP [dm6]	A	C	4.543e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	13663067	3L_13663067_SNP [dm3] 3L_13669967_SNP [dm6]	T	A	4.547e^-4	0.862	INTRON bru-3
3R	24819782	3R_24819782_SNP [dm3] 3R_28994060_SNP [dm6]	T	C	4.551e^-4	0.862	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14461416	2L_14461416_SNP [dm3] 2L_14461416_SNP [dm6]	A	G	4.552e^-4	0.862	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26082771	3R_26082771_SNP [dm3] 3R_30257049_SNP [dm6]	C	A	4.565e^-4	0.862	INTERGENIC
3L	15777515	3L_15777515_SNP [dm3] 3L_15784415_SNP [dm6]	T	A	4.571e^-4	0.862	INTERGENIC
3R	4718412	3R_4718412_SNP [dm3] 3R_8892690_SNP [dm6]	C	T	4.572e^-4	0.862	INTRON pyd
3R	8717218	3R_8717218_SNP [dm3] 3R_12891496_SNP [dm6]	T	C	4.572e^-4	0.862	UPSTREAM d-cup DOWNSTREAM CR44235 INTERGENIC
2L	4065305	2L_4065305_SNP [dm3] 2L_4065305_SNP [dm6]	T	A	4.576e^-4	0.862	INTRON ed
3L	18072017	3L_18072017_SNP [dm3] 3L_18078917_SNP [dm6]	T	G	4.584e^-4	0.862	DOWNSTREAM CR45392 INTERGENIC
2L	13438244	2L_13438244_SNP [dm3] 2L_13438244_SNP [dm6]	A	G	4.586e^-4	0.862	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
2R	7808676	2R_7808676_DEL [dm3] 2R_11921171_DEL [dm6]	GAAATGTGTACCTAT...	C	4.598e^-4	0.862	INTERGENIC
3R	12366106	3R_12366106_SNP [dm3] 3R_16540384_SNP [dm6]	T	C	4.598e^-4	0.862	INTRON CG42342
2L	18919547	2L_18919547_SNP [dm3] 2L_18919547_SNP [dm6]	A	T	4.599e^-4	0.862	INTRON ssp3	TF binding site mE1_TFBS_HSA
3R	9411913	3R_9411913_SNP [dm3] 3R_13586191_SNP [dm6]	C	T	4.601e^-4	0.862	INTERGENIC
X	20785234	X_20785234_SNP [dm3] X_20914207_SNP [dm6]	T	C	4.606e^-4	0.862	INTRON shakB
2R	20703283	2R_20703283_SNP [dm3] 2R_24815760_SNP [dm6]	G	T	4.608e^-4	0.862	INTRON Dll	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16544405	2R_16544405_SNP [dm3] 2R_20656900_SNP [dm6]	T	C	4.615e^-4	0.862	UPSTREAM CG11159 & 1 other INTRON Lrt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19540247	2R_19540247_SNP [dm3] 2R_23652724_SNP [dm6]	T	A	4.621e^-4	0.862	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	13445897	2L_13445897_INS [dm3] 2L_13445897_INS [dm6]	A	ACTATTGA	4.627e^-4	0.862	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	17673356	3L_17673356_SNP [dm3] 3L_17680256_SNP [dm6]	C	T	4.632e^-4	0.862	INTRON CG34251
2L	10820426	2L_10820426_SNP [dm3] 2L_10820426_SNP [dm6]	C	T	4.637e^-4	0.862	UTR_3_PRIME CG6508 UPSTREAM CG17134 INTRON Nos
2L	3894135	2L_3894135_SNP [dm3] 2L_3894135_SNP [dm6]	C	T	4.640e^-4	0.862	INTRON capu
2R	12547370	2R_12547370_INS [dm3] 2R_16659865_INS [dm6]	T	TGTAT	4.650e^-4	0.862	UPSTREAM Picot INTRON Picot

By genomic position
Variant impact
Gene name

Cuticul_5_C23_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results