DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.478e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0141
In_3R_K	4.124e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.2099	0.0448
In_3R_K	16.1221	0.0003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2274 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.829e^-8	0.027	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	2.901e^-8	0.027	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	5.454e^-8	0.034	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.616e^-7	0.076	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	2.613e^-7	0.098	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	5.340e^-7	0.167	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	6.757e^-7	0.181	SYNONYMOUS_CODING CG30344
2R	15172026	2R_15172026_SNP [dm3] 2R_19284521_SNP [dm6]	T	A	8.066e^-7	0.189	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	1.244e^-6	0.223	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5018418	2R_5018418_SNP [dm3] 2R_9130913_SNP [dm6]	T	C	1.427e^-6	0.223	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5046805	2R_5046805_SNP [dm3] 2R_9159300_SNP [dm6]	G	A	1.490e^-6	0.223	INTRON CG8008
2L	15765759	2L_15765759_SNP [dm3] 2L_15765759_SNP [dm6]	C	G	1.539e^-6	0.223	UTR_3_PRIME CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	1.547e^-6	0.223	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	15171997	2R_15171997_SNP [dm3] 2R_19284492_SNP [dm6]	T	G	1.933e^-6	0.259	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5018429	2R_5018429_SNP [dm3] 2R_9130924_SNP [dm6]	T	A	2.434e^-6	0.285	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	2.607e^-6	0.285	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	2.679e^-6	0.285	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	3.070e^-6	0.285	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	3.203e^-6	0.285	INTERGENIC
2R	12646965	2R_12646965_SNP [dm3] 2R_16759460_SNP [dm6]	C	G	3.215e^-6	0.285	INTRON unc-104
2R	12647011	2R_12647011_SNP [dm3] 2R_16759506_SNP [dm6]	T	G	3.505e^-6	0.285	SPLICE_SITE_REGION unc-104 INTRON unc-104
2R	5028235	2R_5028235_SNP [dm3] 2R_9140730_SNP [dm6]	A	T	3.587e^-6	0.285	START_GAINED CG44286 UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	3.588e^-6	0.285	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3L	4080538	3L_4080538_SNP [dm3] 3L_4080538_SNP [dm6]	C	A	3.648e^-6	0.285	INTRON Gad1
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	4.100e^-6	0.304	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	4.216e^-6	0.304	INTRON capu	TF binding site mE1_TFBS_bab1
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	4.779e^-6	0.332	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	18337965	3R_18337965_SNP [dm3] 3R_22512243_SNP [dm6]	A	G	4.958e^-6	0.332	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	5028327	2R_5028327_SNP [dm3] 2R_9140822_SNP [dm6]	G	T	5.840e^-6	0.345	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	11827745	2R_11827745_SNP [dm3] 2R_15940240_SNP [dm6]	G	C	5.846e^-6	0.345	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	5.947e^-6	0.345	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4806057	3L_4806057_SNP [dm3] 3L_4806057_SNP [dm6]	T	C	6.228e^-6	0.345	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4806059	3L_4806059_SNP [dm3] 3L_4806059_SNP [dm6]	A	G	6.228e^-6	0.345	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	6.425e^-6	0.345	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	4806053	3L_4806053_SNP [dm3] 3L_4806053_SNP [dm6]	G	T	6.431e^-6	0.345	UTR_3_PRIME CG18808 UPSTREAM CG7509	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5030388	2R_5030388_SNP [dm3] 2R_9142883_SNP [dm6]	C	T	7.415e^-6	0.386	SYNONYMOUS_CODING shrb DOWNSTREAM CG8788 & 1 other	TF binding site mE1_TFBS_sens
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	7.892e^-6	0.388	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	7.949e^-6	0.388	INTERGENIC
2R	5018046	2R_5018046_SNP [dm3] 2R_9130541_SNP [dm6]	G	T	8.280e^-6	0.388	INTRON CG18659	TF binding site BDTNP1_TFBS_Med
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	8.469e^-6	0.388	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	8.479e^-6	0.388	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	9.552e^-6	0.427	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	23495246	3R_23495246_SNP [dm3] 3R_27669524_SNP [dm6]	T	C	1.053e^-5	0.453	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	1.121e^-5	0.453	INTERGENIC
2R	5017638	2R_5017638_SNP [dm3] 2R_9130133_SNP [dm6]	A	C	1.132e^-5	0.453	INTRON CG18659
2R	5028422	2R_5028422_SNP [dm3] 2R_9140917_SNP [dm6]	C	T	1.137e^-5	0.453	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	1.157e^-5	0.453	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12509830	X_12509830_SNP [dm3] X_12615797_SNP [dm6]	A	G	1.159e^-5	0.453	UPSTREAM CG11085 & 1 other DOWNSTREAM CG2543 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15172241	2R_15172241_SNP [dm3] 2R_19284736_SNP [dm6]	G	A	1.231e^-5	0.471	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	9275701	3R_9275701_SNP [dm3] 3R_13449979_SNP [dm6]	A	C	1.328e^-5	0.498	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	5036111	2R_5036111_SNP [dm3] 2R_9148606_SNP [dm6]	G	C	1.373e^-5	0.498	UPSTREAM CG30345 DOWNSTREAM CG30344 INTERGENIC
3R	13552247	3R_13552247_SNP [dm3] 3R_17726525_SNP [dm6]	A	C	1.380e^-5	0.498	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10367559	2R_10367559_DEL [dm3] 2R_14480054_DEL [dm6]	AA	A	1.408e^-5	0.498	INTERGENIC
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	1.468e^-5	0.51	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3R	15125369	3R_15125369_SNP [dm3] 3R_19299647_SNP [dm6]	A	C	1.582e^-5	0.529	INTERGENIC	TF binding site mE1_TFBS_sens
2L	17138429	2L_17138429_SNP [dm3] 2L_17138429_SNP [dm6]	T	C	1.621e^-5	0.529	INTRON beat-IIIa & 1 other
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	1.643e^-5	0.529	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
2R	5018609	2R_5018609_SNP [dm3] 2R_9131104_SNP [dm6]	C	T	1.665e^-5	0.529	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	1.730e^-5	0.529	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5284553	3L_5284553_SNP [dm3] 3L_5291453_SNP [dm6]	G	A	1.731e^-5	0.529	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8218856	3R_8218856_SNP [dm3] 3R_12393134_SNP [dm6]	G	A	1.734e^-5	0.529	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	10659191	3R_10659191_SNP [dm3] 3R_14833469_SNP [dm6]	G	C	1.761e^-5	0.529	INTRON btsz
2R	8379181	2R_8379181_DEL [dm3] 2R_12491676_DEL [dm6]	CCC	C	1.790e^-5	0.529	UPSTREAM fdl INTRON fdl
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	1.829e^-5	0.529	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	25107932	3R_25107932_SNP [dm3] 3R_29282210_SNP [dm6]	T	C	1.834e^-5	0.529	INTERGENIC	regulatory region REDfly_CRMs
3L	7426127	3L_7426127_SNP [dm3] 3L_7433027_SNP [dm6]	C	T	2.036e^-5	0.575	DOWNSTREAM Rac2 INTRON CG42458
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	2.069e^-5	0.575	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	2.086e^-5	0.575	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15773069	2L_15773069_SNP [dm3] 2L_15773069_SNP [dm6]	G	T	2.118e^-5	0.576	UTR_5_PRIME CG31826 UPSTREAM CG31826
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	2.302e^-5	0.606	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	11827736	2R_11827736_SNP [dm3] 2R_15940231_SNP [dm6]	T	A	2.315e^-5	0.606	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5025099	2R_5025099_SNP [dm3] 2R_9137594_SNP [dm6]	G	T	2.373e^-5	0.606	SYNONYMOUS_CODING alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1095021	2L_1095021_SNP [dm3] 2L_1095021_SNP [dm6]	G	A	2.377e^-5	0.606	INTRON CG4629
2L	17142100	2L_17142100_SNP [dm3] 2L_17142100_SNP [dm6]	C	T	2.393e^-5	0.606	INTRON beat-IIIa & 1 other
2R	5060931	2R_5060931_SNP [dm3] 2R_9173426_SNP [dm6]	G	A	2.443e^-5	0.609	SYNONYMOUS_CODING Rme-8
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	2.512e^-5	0.609	INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	2.525e^-5	0.609	INTRON Octbeta3R
2R	4672292	2R_4672292_SNP [dm3] 2R_8784787_SNP [dm6]	C	T	2.534e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5059503	2R_5059503_SNP [dm3] 2R_9171998_SNP [dm6]	A	C	2.613e^-5	0.613	SYNONYMOUS_CODING Rme-8
2L	17152836	2L_17152836_SNP [dm3] 2L_17152836_SNP [dm6]	G	A	2.621e^-5	0.613	INTRON beat-IIIa & 1 other
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	2.684e^-5	0.613	INTRON CG18769
2R	5025267	2R_5025267_SNP [dm3] 2R_9137762_SNP [dm6]	G	A	2.732e^-5	0.613	START_GAINED alc UTR_5_PRIME alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5020072	2R_5020072_SNP [dm3] 2R_9132567_SNP [dm6]	G	T	2.750e^-5	0.613	START_GAINED Hydr1 UTR_5_PRIME Hydr1 UPSTREAM CG18659 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	2.756e^-5	0.613	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	2.795e^-5	0.613	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	17254383	2L_17254383_SNP [dm3] 2L_17254383_SNP [dm6]	A	G	2.810e^-5	0.613	INTRON beat-IIIc
2R	5050835	2R_5050835_SNP [dm3] 2R_9163330_SNP [dm6]	T	C	2.898e^-5	0.617	NON_SYNONYMOUS_CODING CG8046 SPLICE_SITE_REGION CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15816368	2L_15816368_SNP [dm3] 2L_15816368_SNP [dm6]	A	G	2.971e^-5	0.617	INTERGENIC
3L	8033741	3L_8033741_SNP [dm3] 3L_8040641_SNP [dm6]	G	C	2.980e^-5	0.617	INTRON nmo
2R	13049284	2R_13049284_SNP [dm3] 2R_17161779_SNP [dm6]	A	T	3.025e^-5	0.617	UPSTREAM CG30457 INTERGENIC
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	3.030e^-5	0.617	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6428656	2R_6428656_SNP [dm3] 2R_10541151_SNP [dm6]	T	C	3.062e^-5	0.617	UPSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21851312	3R_21851312_SNP [dm3] 3R_26025590_SNP [dm6]	G	T	3.140e^-5	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6497271	3R_6497271_SNP [dm3] 3R_10671549_SNP [dm6]	A	T	3.166e^-5	0.617	INTERGENIC
2R	15172244	2R_15172244_SNP [dm3] 2R_19284739_SNP [dm6]	G	T	3.174e^-5	0.617	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	12854237	2R_12854237_SNP [dm3] 2R_16966732_SNP [dm6]	T	A	3.281e^-5	0.617	INTERGENIC
3R	25107982	3R_25107982_SNP [dm3] 3R_29282260_SNP [dm6]	C	T	3.308e^-5	0.617	INTERGENIC	regulatory region REDfly_CRMs
3L	12742698	3L_12742698_SNP [dm3] 3L_12749598_SNP [dm6]	T	G	3.340e^-5	0.617	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	3.441e^-5	0.617	UPSTREAM CG6527 INTRON A2bp1
3R	21851630	3R_21851630_SNP [dm3] 3R_26025908_SNP [dm6]	T	C	3.450e^-5	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9275721	3R_9275721_SNP [dm3] 3R_13449999_SNP [dm6]	G	A	3.459e^-5	0.617	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12793054	2R_12793054_INS [dm3] 2R_16905549_INS [dm6]	T	TT	3.487e^-5	0.617	INTERGENIC
3L	3445803	3L_3445803_SNP [dm3] 3L_3445803_SNP [dm6]	G	C	3.491e^-5	0.617	INTRON eIF5B
2R	11827728	2R_11827728_SNP [dm3] 2R_15940223_SNP [dm6]	G	A	3.553e^-5	0.617	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6427102	2R_6427102_SNP [dm3] 2R_10539597_SNP [dm6]	C	G	3.596e^-5	0.617	INTRON lola	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12291226	3L_12291226_DEL [dm3] 3L_12298126_DEL [dm6]	GGG	G	3.654e^-5	0.617	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6494055	2R_6494055_SNP [dm3] 2R_10606550_SNP [dm6]	C	T	3.664e^-5	0.617	INTRON psq
2R	5016474	2R_5016474_SNP [dm3] 2R_9128969_SNP [dm6]	T	C	3.677e^-5	0.617	INTRON CG18659
X	19341618	X_19341618_INS [dm3] X_19447585_INS [dm6]	T	TA	3.683e^-5	0.617	INTRON kek5
2R	6427131	2R_6427131_SNP [dm3] 2R_10539626_SNP [dm6]	C	T	3.692e^-5	0.617	INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	3.709e^-5	0.617	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	5048966	2R_5048966_SNP [dm3] 2R_9161461_SNP [dm6]	T	A	3.816e^-5	0.617	UPSTREAM CR44283 & 1 other DOWNSTREAM CG8046 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11827709	2R_11827709_SNP [dm3] 2R_15940204_SNP [dm6]	C	T	3.855e^-5	0.617	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21851431	3R_21851431_SNP [dm3] 3R_26025709_SNP [dm6]	G	A	3.859e^-5	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	7988292	3R_7988292_SNP [dm3] 3R_12162570_SNP [dm6]	G	C	3.862e^-5	0.617	DOWNSTREAM Cpn INTERGENIC
2R	11827704	2R_11827704_SNP [dm3] 2R_15940199_SNP [dm6]	G	A	3.867e^-5	0.617	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	3.934e^-5	0.617	INTRON fas
3R	21854541	3R_21854541_SNP [dm3] 3R_26028819_SNP [dm6]	T	A	3.975e^-5	0.617	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	3.986e^-5	0.617	INTRON fas
X	6409874	X_6409874_SNP [dm3] X_6515841_SNP [dm6]	A	C	3.992e^-5	0.617	INTRON CG42340
2R	11827758	2R_11827758_SNP [dm3] 2R_15940253_SNP [dm6]	G	A	3.993e^-5	0.617	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15120351	2R_15120351_SNP [dm3] 2R_19232846_SNP [dm6]	A	G	4.077e^-5	0.617	INTRON cora	TF binding site mE1_TFBS_HSA
3R	21852466	3R_21852466_SNP [dm3] 3R_26026744_SNP [dm6]	G	A	4.079e^-5	0.617	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	21843607	3R_21843607_SNP [dm3] 3R_26017885_SNP [dm6]	T	A	4.082e^-5	0.617	UPSTREAM E_spl_m2-BFM DOWNSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9810724	3L_9810724_INS [dm3] 3L_9817624_INS [dm6]	T	TT	4.125e^-5	0.619	INTRON CG43897
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	4.183e^-5	0.62	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21854425	3R_21854425_SNP [dm3] 3R_26028703_SNP [dm6]	A	C	4.207e^-5	0.62	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11827703	2R_11827703_SNP [dm3] 2R_15940198_SNP [dm6]	C	T	4.232e^-5	0.62	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	4.391e^-5	0.635	INTRON sNPF
X	19633477	X_19633477_SNP [dm3] X_19739444_SNP [dm6]	A	T	4.424e^-5	0.635	UTR_3_PRIME CG14234
2R	7049962	2R_7049962_SNP [dm3] 2R_11162457_SNP [dm6]	T	C	4.438e^-5	0.635	INTRON shn & 1 other
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	4.482e^-5	0.637	DOWNSTREAM CG18109 INTERGENIC
3R	21839768	3R_21839768_SNP [dm3] 3R_26014046_SNP [dm6]	A	T	4.571e^-5	0.645	UPSTREAM Kaz-m1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	18110109	2R_18110109_SNP [dm3] 2R_22222604_SNP [dm6]	A	G	4.647e^-5	0.645	SPLICE_SITE_REGION Oatp58Db INTRON Oatp58Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	4.669e^-5	0.645	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	19633438	X_19633438_SNP [dm3] X_19739405_SNP [dm6]	C	G	4.713e^-5	0.645	UTR_3_PRIME CG14234
3L	4472387	3L_4472387_SNP [dm3] 3L_4472387_SNP [dm6]	G	A	4.816e^-5	0.645	UTR_3_PRIME CG32248 UPSTREAM CG11349
3R	21848598	3R_21848598_SNP [dm3] 3R_26022876_SNP [dm6]	G	C	4.855e^-5	0.645	UTR_3_PRIME E_spl_m3-HLH DOWNSTREAM E_spl_m4-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	6429050	2R_6429050_SNP [dm3] 2R_10541545_SNP [dm6]	G	A	4.881e^-5	0.645	UTR_5_PRIME lola UPSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22004507	3R_22004507_SNP [dm3] 3R_26178785_SNP [dm6]	A	G	4.900e^-5	0.645	INTRON CG31323
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	4.935e^-5	0.645	INTERGENIC
3L	11348234	3L_11348234_SNP [dm3] 3L_11355134_SNP [dm6]	T	C	4.946e^-5	0.645	INTERGENIC
2R	8393144	2R_8393144_SNP [dm3] 2R_12505639_SNP [dm6]	A	G	4.977e^-5	0.645	UPSTREAM fdl INTRON fdl
2R	11827718	2R_11827718_SNP [dm3] 2R_15940213_SNP [dm6]	A	T	5.001e^-5	0.645	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7425052	3L_7425052_SNP [dm3] 3L_7431952_SNP [dm6]	A	T	5.009e^-5	0.645	INTRON CG42458
3R	21392019	3R_21392019_SNP [dm3] 3R_25566297_SNP [dm6]	C	G	5.019e^-5	0.645	INTRON msi
2R	18572042	2R_18572042_SNP [dm3] 2R_22684537_SNP [dm6]	G	A	5.110e^-5	0.65	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15120327	2R_15120327_SNP [dm3] 2R_19232822_SNP [dm6]	A	C	5.143e^-5	0.65	INTRON cora	TF binding site mE1_TFBS_HSA
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	5.164e^-5	0.65	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22004794	3R_22004794_SNP [dm3] 3R_26179072_SNP [dm6]	A	T	5.202e^-5	0.651	INTRON CG31323
2R	17812003	2R_17812003_SNP [dm3] 2R_21924498_SNP [dm6]	T	A	5.325e^-5	0.653	INTRON Fili
2R	12042805	2R_12042805_SNP [dm3] 2R_16155300_SNP [dm6]	C	G	5.327e^-5	0.653	INTRON lbk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5031073	2R_5031073_SNP [dm3] 2R_9143568_SNP [dm6]	C	A	5.348e^-5	0.653	UPSTREAM Prp38 INTRON shrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	5.362e^-5	0.653	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8974234	3L_8974234_SNP [dm3] 3L_8981134_SNP [dm6]	T	G	5.403e^-5	0.654	UPSTREAM CG13314 INTERGENIC
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	5.479e^-5	0.657	INTRON CG13670	TF binding site mE1_TFBS_cad
2R	15002548	2R_15002548_SNP [dm3] 2R_19115043_SNP [dm6]	C	A	5.499e^-5	0.657	INTRON 5-HT1A
2L	16128095	2L_16128095_INS [dm3] 2L_16128095_INS [dm6]	A	AA	5.825e^-5	0.673	INTERGENIC
3R	10244844	3R_10244844_SNP [dm3] 3R_14419122_SNP [dm6]	T	G	5.878e^-5	0.673	NON_SYNONYMOUS_CODING natalisin INTRON cv-c	TF binding site mE1_TFBS_chinmo
2L	2060093	2L_2060093_SNP [dm3] 2L_2060093_SNP [dm6]	G	A	5.884e^-5	0.673	INTRON dpr3
2L	17142461	2L_17142461_SNP [dm3] 2L_17142461_SNP [dm6]	G	A	5.903e^-5	0.673	INTRON beat-IIIa & 1 other
2R	13772402	2R_13772402_SNP [dm3] 2R_17884897_SNP [dm6]	T	C	5.929e^-5	0.673	INTRON Elk
2R	5030569	2R_5030569_SNP [dm3] 2R_9143064_SNP [dm6]	C	T	5.958e^-5	0.673	SYNONYMOUS_CODING shrb UPSTREAM Prp38	TF binding site mE1_TFBS_sens
3L	7424055	3L_7424055_SNP [dm3] 3L_7430955_SNP [dm6]	C	T	6.131e^-5	0.673	INTRON CG42458
2R	6307285	2R_6307285_INS [dm3] 2R_10419780_INS [dm6]	T	TT	6.151e^-5	0.673	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	6.200e^-5	0.673	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5874661	3L_5874661_SNP [dm3] 3L_5881561_SNP [dm6]	C	A	6.241e^-5	0.673	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13772409	2R_13772409_SNP [dm3] 2R_17884904_SNP [dm6]	C	G	6.256e^-5	0.673	INTRON Elk
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	6.267e^-5	0.673	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
3L	11017014	3L_11017014_SNP [dm3] 3L_11023914_SNP [dm6]	C	A	6.288e^-5	0.673	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	6.314e^-5	0.673	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
3L	11740955	3L_11740955_DEL [dm3] 3L_11747855_DEL [dm6]	ACGTATT	A	6.328e^-5	0.673	INTRON CG6024
3L	11740967	3L_11740967_INS [dm3] 3L_11747867_INS [dm6]	T	TTATTCATATTTATT...	6.328e^-5	0.673	INTRON CG6024
3L	11740969	3L_11740969_SNP [dm3] 3L_11747869_SNP [dm6]	C	T	6.328e^-5	0.673	INTRON CG6024
3L	8260614	3L_8260614_SNP [dm3] 3L_8267514_SNP [dm6]	T	G	6.388e^-5	0.673	INTRON Dscam4
2R	10367562	2R_10367562_SNP [dm3] 2R_14480057_SNP [dm6]	G	T	6.396e^-5	0.673	INTERGENIC
X	22044257	X_22044257_SNP [dm3] X_22642421_SNP [dm6]	G	T	6.413e^-5	0.673	INTERGENIC
X	6409717	X_6409717_SNP [dm3] X_6515684_SNP [dm6]	T	G	6.428e^-5	0.673	INTRON CG42340
2L	14522817	2L_14522817_INS [dm3] 2L_14522817_INS [dm6]	C	CAAC	6.599e^-5	0.673	INTERGENIC
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	6.622e^-5	0.673	INTERGENIC
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	6.647e^-5	0.673	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10226874	3R_10226874_SNP [dm3] 3R_14401152_SNP [dm6]	A	G	6.689e^-5	0.673	INTRON cv-c
2R	5033085	2R_5033085_DEL [dm3] 2R_9145580_DEL [dm6]	CGGC	C	6.707e^-5	0.673	UTR_5_PRIME CG30344 DOWNSTREAM Prp38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	6.710e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14149212	3R_14149212_SNP [dm3] 3R_18323490_SNP [dm6]	A	G	6.726e^-5	0.673	INTRON CG31235
2R	6308184	2R_6308184_SNP [dm3] 2R_10420679_SNP [dm6]	C	T	6.822e^-5	0.673	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	6.825e^-5	0.673	SYNONYMOUS_CODING decay UPSTREAM Gr89a
2L	14844884	2L_14844884_DEL [dm3] 2L_14844884_DEL [dm6]	GGG	G	6.882e^-5	0.673	DOWNSTREAM CG15279 INTERGENIC
3L	2806330	3L_2806330_SNP [dm3] 3L_2806330_SNP [dm6]	C	A	6.884e^-5	0.673	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	21854400	3R_21854400_SNP [dm3] 3R_26028678_SNP [dm6]	T	C	6.920e^-5	0.673	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7425920	3L_7425920_SNP [dm3] 3L_7432820_SNP [dm6]	G	A	6.934e^-5	0.673	DOWNSTREAM Rac2 INTRON CG42458
2R	10368231	2R_10368231_SNP [dm3] 2R_14480726_SNP [dm6]	A	T	6.941e^-5	0.673	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	6.941e^-5	0.673	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19237214	2R_19237214_SNP [dm3] 2R_23349691_SNP [dm6]	C	A	7.005e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6474640	3R_6474640_SNP [dm3] 3R_10648918_SNP [dm6]	G	T	7.022e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	17279091	3R_17279091_SNP [dm3] 3R_21453369_SNP [dm6]	C	A	7.058e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18282810	2R_18282810_SNP [dm3] 2R_22395305_SNP [dm6]	C	A	7.072e^-5	0.673	INTRON babos
3R	21851648	3R_21851648_SNP [dm3] 3R_26025926_SNP [dm6]	T	C	7.127e^-5	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	7.206e^-5	0.676	INTRON CG8910
X	6908519	X_6908519_SNP [dm3] X_7014486_SNP [dm6]	G	A	7.384e^-5	0.676	SYNONYMOUS_CODING CG4593 UPSTREAM CG3032	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1720469	3L_1720469_DEL [dm3] 3L_1720469_DEL [dm6]	AAAAAA	A	7.391e^-5	0.676	DOWNSTREAM CG18171 INTRON drpr
2R	15746805	2R_15746805_SNP [dm3] 2R_19859300_SNP [dm6]	A	G	7.410e^-5	0.676	UPSTREAM CR44571 DOWNSTREAM CR44570 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11827650	2R_11827650_SNP [dm3] 2R_15940145_SNP [dm6]	A	G	7.516e^-5	0.676	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC
2L	9364937	2L_9364937_SNP [dm3] 2L_9364937_SNP [dm6]	C	A	7.590e^-5	0.676	EXON CR43404
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	7.661e^-5	0.676	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16381548	2R_16381548_SNP [dm3] 2R_20494043_SNP [dm6]	C	T	7.679e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10827134	3L_10827134_SNP [dm3] 3L_10834034_SNP [dm6]	C	T	7.710e^-5	0.676	INTERGENIC
2L	2060095	2L_2060095_SNP [dm3] 2L_2060095_SNP [dm6]	A	C	7.825e^-5	0.676	INTRON dpr3
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	7.894e^-5	0.676	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
3L	6859960	3L_6859960_SNP [dm3] 3L_6866860_SNP [dm6]	C	T	7.965e^-5	0.676	UPSTREAM CR45115 INTERGENIC
2L	17142599	2L_17142599_SNP [dm3] 2L_17142599_SNP [dm6]	G	A	8.022e^-5	0.676	INTRON beat-IIIa & 1 other
2L	20038760	2L_20038760_SNP [dm3] 2L_20038760_SNP [dm6]	G	A	8.046e^-5	0.676	INTRON sNPF
2R	5028929	2R_5028929_SNP [dm3] 2R_9141424_SNP [dm6]	T	G	8.110e^-5	0.676	DOWNSTREAM shrb INTRON CG8788 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3616867	3L_3616867_SNP [dm3] 3L_3616867_SNP [dm6]	A	C	8.110e^-5	0.676	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	21861278	3R_21861278_SNP [dm3] 3R_26035556_SNP [dm6]	T	A	8.118e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17078662	2R_17078662_SNP [dm3] 2R_21191157_SNP [dm6]	G	A	8.127e^-5	0.676	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7563440	2R_7563440_SNP [dm3] 2R_11675935_SNP [dm6]	C	T	8.228e^-5	0.676	UTR_5_PRIME Tret1-2 INTRON Roc2
2L	1105084	2L_1105084_SNP [dm3] 2L_1105084_SNP [dm6]	G	A	8.245e^-5	0.676	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6304459	2R_6304459_SNP [dm3] 2R_10416954_SNP [dm6]	C	A	8.279e^-5	0.676	UTR_5_PRIME CG42732	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	12411182	2R_12411182_SNP [dm3] 2R_16523677_SNP [dm6]	C	A	8.375e^-5	0.676	INTRON Sema-2a
3R	21861295	3R_21861295_SNP [dm3] 3R_26035573_SNP [dm6]	C	T	8.409e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16053031	3R_16053031_SNP [dm3] 3R_20227309_SNP [dm6]	G	A	8.433e^-5	0.676	INTRON Nlg4
3L	11035514	3L_11035514_SNP [dm3] 3L_11042414_SNP [dm6]	G	A	8.444e^-5	0.676	INTRON CG43693
2L	7135395	2L_7135395_SNP [dm3] 2L_7135395_SNP [dm6]	G	C	8.448e^-5	0.676	INTRON Pvf3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11827697	2R_11827697_MNP [dm3] 2R_15940192_MNP [dm6]	CTT	TCC	8.575e^-5	0.676	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13680340	3L_13680340_SNP [dm3] 3L_13687240_SNP [dm6]	A	G	8.614e^-5	0.676	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5996719	X_5996719_SNP [dm3] X_6102686_SNP [dm6]	G	A	8.630e^-5	0.676	INTRON Nep1	TF binding site mE1_TFBS_chinmo
3L	1270909	3L_1270909_SNP [dm3] 3L_1270909_SNP [dm6]	A	C	8.641e^-5	0.676	INTRON CG9134
2R	16145990	2R_16145990_SNP [dm3] 2R_20258485_SNP [dm6]	A	G	8.668e^-5	0.676	NON_SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11827897	2R_11827897_SNP [dm3] 2R_15940392_SNP [dm6]	T	G	8.760e^-5	0.676	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	8.768e^-5	0.676	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20912237	3R_20912237_SNP [dm3] 3R_25086515_SNP [dm6]	C	T	8.826e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18531105	2R_18531105_SNP [dm3] 2R_22643600_SNP [dm6]	G	C	8.870e^-5	0.676	SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	8.887e^-5	0.676	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2060121	2L_2060121_SNP [dm3] 2L_2060121_SNP [dm6]	C	A	8.980e^-5	0.676	INTRON dpr3
2L	1136480	2L_1136480_SNP [dm3] 2L_1136480_SNP [dm6]	T	G	9.037e^-5	0.676	INTRON CG4577
X	14065943	X_14065943_SNP [dm3] X_14171910_SNP [dm6]	G	A	9.084e^-5	0.676	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
2R	15172028	2R_15172028_SNP [dm3] 2R_19284523_SNP [dm6]	C	A	9.091e^-5	0.676	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15172029	2R_15172029_SNP [dm3] 2R_19284524_SNP [dm6]	T	A	9.091e^-5	0.676	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10211205	2R_10211205_SNP [dm3] 2R_14323700_SNP [dm6]	T	C	9.108e^-5	0.676	INTRON Shroom
3L	8953620	3L_8953620_SNP [dm3] 3L_8960520_SNP [dm6]	A	G	9.109e^-5	0.676	SYNONYMOUS_CODING CG13313 DOWNSTREAM CG5660	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	9.161e^-5	0.676	INTERGENIC
3L	12742703	3L_12742703_SNP [dm3] 3L_12749603_SNP [dm6]	A	T	9.185e^-5	0.676	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	9.186e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	11893038	3L_11893038_SNP [dm3] 3L_11899938_SNP [dm6]	C	T	9.201e^-5	0.676	INTRON CG44837 EXON CR43624
3L	18594126	3L_18594126_SNP [dm3] 3L_18601026_SNP [dm6]	C	T	9.225e^-5	0.676	SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	9.245e^-5	0.676	INTRON kar	TF binding site mE1_TFBS_cad
2L	16362195	2L_16362195_SNP [dm3] 2L_16362195_SNP [dm6]	C	T	9.276e^-5	0.676	INTERGENIC
2R	18121524	2R_18121524_SNP [dm3] 2R_22234019_SNP [dm6]	C	T	9.281e^-5	0.676	INTERGENIC
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	9.304e^-5	0.676	EXON CR43404
2R	5031449	2R_5031449_DEL [dm3] 2R_9143944_DEL [dm6]	GCTTGGCG	G	9.307e^-5	0.676	UPSTREAM Prp38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	14543393	X_14543393_DEL [dm3] X_14649360_DEL [dm6]	GCATATGTATATTTGTATAT...	G	9.318e^-5	0.676	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6544144	3R_6544144_SNP [dm3] 3R_10718422_SNP [dm6]	G	A	9.402e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2060164	2L_2060164_SNP [dm3] 2L_2060164_SNP [dm6]	G	A	9.437e^-5	0.676	INTRON dpr3
3L	16975611	3L_16975611_SNP [dm3] 3L_16982511_SNP [dm6]	G	C	9.468e^-5	0.676	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	2034293	3L_2034293_INS [dm3] 3L_2034293_INS [dm6]	C	CC	9.502e^-5	0.676	INTERGENIC
3R	21845567	3R_21845567_SNP [dm3] 3R_26019845_SNP [dm6]	G	A	9.509e^-5	0.676	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
3R	21847183	3R_21847183_SNP [dm3] 3R_26021461_SNP [dm6]	T	G	9.509e^-5	0.676	UPSTREAM E_spl_m3-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21847272	3R_21847272_SNP [dm3] 3R_26021550_SNP [dm6]	G	A	9.509e^-5	0.676	UPSTREAM E_spl_m3-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20804324	3R_20804324_SNP [dm3] 3R_24978602_SNP [dm6]	G	C	9.530e^-5	0.676	INTERGENIC
3L	11035240	3L_11035240_SNP [dm3] 3L_11042140_SNP [dm6]	A	C	9.570e^-5	0.676	INTRON CG43693	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	6334470	X_6334470_SNP [dm3] X_6440437_SNP [dm6]	A	G	9.608e^-5	0.676	INTRON CG42340
2R	5036712	2R_5036712_DEL [dm3] 2R_9149207_DEL [dm6]	TA	T	9.691e^-5	0.676	DOWNSTREAM CG30344 INTRON CG30345
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	9.707e^-5	0.676	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
3R	21854153	3R_21854153_SNP [dm3] 3R_26028431_SNP [dm6]	C	T	9.725e^-5	0.676	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5624828	3L_5624828_SNP [dm3] 3L_5631728_SNP [dm6]	T	C	9.769e^-5	0.676	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5053253	2R_5053253_SNP [dm3] 2R_9165748_SNP [dm6]	C	T	9.880e^-5	0.676	NON_SYNONYMOUS_CODING Rad51C UPSTREAM CG8046 DOWNSTREAM CG42382	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	2165538	3R_2165538_SNP [dm3] 3R_6339816_SNP [dm6]	C	A	9.952e^-5	0.676	UPSTREAM Osi20 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19237965	2R_19237965_SNP [dm3] 2R_23350442_SNP [dm6]	G	A	9.957e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8028018	3R_8028018_SNP [dm3] 3R_12202296_SNP [dm6]	G	A	1.000e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7426129	3L_7426129_SNP [dm3] 3L_7433029_SNP [dm6]	A	C	1.001e^-4	0.676	DOWNSTREAM Rac2 INTRON CG42458
3R	25810441	3R_25810441_SNP [dm3] 3R_29984719_SNP [dm6]	T	C	1.006e^-4	0.676	INTRON CG7896
2R	6307254	2R_6307254_SNP [dm3] 2R_10419749_SNP [dm6]	A	C	1.015e^-4	0.676	UTR_3_PRIME Prx2540-2 DOWNSTREAM CG11825	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11020683	3L_11020683_SNP [dm3] 3L_11027583_SNP [dm6]	T	A	1.019e^-4	0.676	UTR_5_PRIME CG32081 DOWNSTREAM CG32079
2R	6304547	2R_6304547_SNP [dm3] 2R_10417042_SNP [dm6]	A	G	1.019e^-4	0.676	UPSTREAM CG42732 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	17279360	3R_17279360_SNP [dm3] 3R_21453638_SNP [dm6]	C	T	1.023e^-4	0.676	INTERGENIC
3L	4208172	3L_4208172_SNP [dm3] 3L_4208172_SNP [dm6]	A	G	1.025e^-4	0.676	UTR_3_PRIME Cpr64Aa INTRON CG43367	TF binding site mE1_TFBS_chinmo
2R	20301317	2R_20301317_SNP [dm3] 2R_24413794_SNP [dm6]	T	C	1.026e^-4	0.676	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069 UPSTREAM CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5640310	3R_5640310_SNP [dm3] 3R_9814588_SNP [dm6]	C	A	1.030e^-4	0.676	SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534
3L	19229304	3L_19229304_SNP [dm3] 3L_19236204_SNP [dm6]	T	A	1.030e^-4	0.676	UPSTREAM CG33647 & 1 other INTERGENIC
2R	15054159	2R_15054159_SNP [dm3] 2R_19166654_SNP [dm6]	T	A	1.032e^-4	0.676	INTRON CG10737	TF binding site mE1_TFBS_Trl
2R	13664846	2R_13664846_SNP [dm3] 2R_17777341_SNP [dm6]	G	A	1.033e^-4	0.676	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad
X	22036704	X_22036704_SNP [dm3] X_22634868_SNP [dm6]	T	A	1.037e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	12269000	2L_12269000_SNP [dm3] 2L_12269000_SNP [dm6]	A	G	1.039e^-4	0.676	INTRON aret
3R	21851767	3R_21851767_SNP [dm3] 3R_26026045_SNP [dm6]	T	C	1.040e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	8953617	3L_8953617_SNP [dm3] 3L_8960517_SNP [dm6]	G	A	1.041e^-4	0.676	SYNONYMOUS_CODING CG13313 DOWNSTREAM CG5660	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24487463	3R_24487463_SNP [dm3] 3R_28661741_SNP [dm6]	G	C	1.047e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17279197	3R_17279197_SNP [dm3] 3R_21453475_SNP [dm6]	T	C	1.052e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6308200	2R_6308200_SNP [dm3] 2R_10420695_SNP [dm6]	T	C	1.055e^-4	0.676	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	6308201	2R_6308201_SNP [dm3] 2R_10420696_SNP [dm6]	C	T	1.055e^-4	0.676	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	14871654	2R_14871654_SNP [dm3] 2R_18984149_SNP [dm6]	A	G	1.064e^-4	0.676	INTERGENIC
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	1.066e^-4	0.676	SYNONYMOUS_CODING pps
2L	15773075	2L_15773075_SNP [dm3] 2L_15773075_SNP [dm6]	G	A	1.066e^-4	0.676	UTR_5_PRIME CG31826 UPSTREAM CG31826
3R	21855922	3R_21855922_SNP [dm3] 3R_26030200_SNP [dm6]	T	C	1.067e^-4	0.676	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	1.071e^-4	0.676	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	1.075e^-4	0.676	INTRON tinc
3L	1255946	3L_1255946_SNP [dm3] 3L_1255946_SNP [dm6]	A	C	1.078e^-4	0.676	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
2R	15120383	2R_15120383_SNP [dm3] 2R_19232878_SNP [dm6]	C	T	1.083e^-4	0.676	INTRON cora	TF binding site mE1_TFBS_HSA
3R	21839726	3R_21839726_SNP [dm3] 3R_26014004_SNP [dm6]	A	G	1.091e^-4	0.676	UPSTREAM Kaz-m1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	9084045	X_9084045_SNP [dm3] X_9190012_SNP [dm6]	G	A	1.095e^-4	0.676	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
2R	17024754	2R_17024754_SNP [dm3] 2R_21137249_SNP [dm6]	G	A	1.098e^-4	0.676	INTRON Magi
2L	5908518	2L_5908518_SNP [dm3] 2L_5908518_SNP [dm6]	C	T	1.099e^-4	0.676	SYNONYMOUS_CODING bchs DOWNSTREAM CG14000	TF binding site BDTNP1_TFBS_dl
3R	16053046	3R_16053046_SNP [dm3] 3R_20227324_SNP [dm6]	T	C	1.104e^-4	0.676	INTRON Nlg4
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	1.105e^-4	0.676	INTERGENIC
2R	6305385	2R_6305385_SNP [dm3] 2R_10417880_SNP [dm6]	G	T	1.113e^-4	0.676	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16409859	3R_16409859_SNP [dm3] 3R_20584137_SNP [dm6]	A	G	1.120e^-4	0.676	SYNONYMOUS_CODING CG16953	TF binding site mE1_TFBS_sens
3R	16410158	3R_16410158_SNP [dm3] 3R_20584436_SNP [dm6]	A	T	1.122e^-4	0.676	INTRON CG16953
X	5787771	X_5787771_SNP [dm3] X_5893738_SNP [dm6]	C	T	1.124e^-4	0.676	INTRON CR45668	TF binding site mE1_TFBS_zfh1
3L	10811783	3L_10811783_SNP [dm3] 3L_10818683_SNP [dm6]	G	T	1.125e^-4	0.676	INTERGENIC
3L	18594112	3L_18594112_SNP [dm3] 3L_18601012_SNP [dm6]	A	C	1.125e^-4	0.676	NON_SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
3R	22328818	3R_22328818_SNP [dm3] 3R_26503096_SNP [dm6]	C	A	1.126e^-4	0.676	INTRON plum	TF binding site BDTNP1_TFBS_dl
3R	16324290	3R_16324290_DEL [dm3] 3R_20498568_DEL [dm6]	AAT	A	1.127e^-4	0.676	INTERGENIC
3L	12167952	3L_12167952_SNP [dm3] 3L_12174852_SNP [dm6]	A	G	1.136e^-4	0.676	INTRON Rh7
2R	13820149	2R_13820149_SNP [dm3] 2R_17932644_SNP [dm6]	T	C	1.138e^-4	0.676	INTERGENIC
3R	16410296	3R_16410296_SNP [dm3] 3R_20584574_SNP [dm6]	T	G	1.144e^-4	0.676	INTRON CG16953
3R	6497229	3R_6497229_SNP [dm3] 3R_10671507_SNP [dm6]	G	T	1.150e^-4	0.676	INTERGENIC
2R	8388382	2R_8388382_SNP [dm3] 2R_12500877_SNP [dm6]	G	A	1.152e^-4	0.676	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad
3R	21852845	3R_21852845_SNP [dm3] 3R_26027123_SNP [dm6]	C	T	1.159e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21842195	3R_21842195_SNP [dm3] 3R_26016473_SNP [dm6]	C	T	1.165e^-4	0.676	UTR_3_PRIME Kaz-m1 DOWNSTREAM E_spl_m2-BFM EXON CR45040	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.171e^-4	0.676	UPSTREAM hoe1 INTRON hoe1
3R	10659189	3R_10659189_SNP [dm3] 3R_14833467_SNP [dm6]	C	T	1.178e^-4	0.676	INTRON btsz
2R	19236326	2R_19236326_SNP [dm3] 2R_23348803_SNP [dm6]	C	A	1.178e^-4	0.676	INTERGENIC
2R	5031437	2R_5031437_SNP [dm3] 2R_9143932_SNP [dm6]	C	G	1.185e^-4	0.676	UPSTREAM Prp38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	2816520	2R_2816520_SNP [dm3] 2R_6929015_SNP [dm6]	C	T	1.187e^-4	0.676	INTRON mim	TF binding site mE1_TFBS_cad
3R	21856165	3R_21856165_SNP [dm3] 3R_26030443_SNP [dm6]	C	G	1.193e^-4	0.676	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	22346051	3R_22346051_SNP [dm3] 3R_26520329_SNP [dm6]	T	C	1.198e^-4	0.676	INTRON plum EXON CR45226
3L	11348325	3L_11348325_SNP [dm3] 3L_11355225_SNP [dm6]	G	C	1.198e^-4	0.676	INTERGENIC
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	1.212e^-4	0.676	INTRON CadN
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	1.220e^-4	0.676	INTERGENIC
3L	7699200	3L_7699200_SNP [dm3] 3L_7706100_SNP [dm6]	C	A	1.223e^-4	0.676	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	7699227	3L_7699227_SNP [dm3] 3L_7706127_SNP [dm6]	C	T	1.223e^-4	0.676	SYNONYMOUS_CODING Ank2 INTRON CG32373
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	1.225e^-4	0.676	INTERGENIC
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	1.226e^-4	0.676	DOWNSTREAM primo-2 & 2 others INTRON CG31469
2R	5017835	2R_5017835_SNP [dm3] 2R_9130330_SNP [dm6]	A	T	1.226e^-4	0.676	INTRON CG18659
2L	20066236	2L_20066236_SNP [dm3] 2L_20066236_SNP [dm6]	A	T	1.228e^-4	0.676	UPSTREAM bwa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20968253	2L_20968253_SNP [dm3] 2L_20968253_SNP [dm6]	A	T	1.233e^-4	0.676	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	17424992	X_17424992_SNP [dm3] X_17530959_SNP [dm6]	T	A	1.233e^-4	0.676	INTRON CG43658
2R	19191755	2R_19191755_SNP [dm3] 2R_23304232_SNP [dm6]	G	T	1.233e^-4	0.676	INTERGENIC
3L	5874460	3L_5874460_SNP [dm3] 3L_5881360_SNP [dm6]	C	G	1.236e^-4	0.676	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	1.245e^-4	0.676	INTRON CG45186
2R	10368233	2R_10368233_SNP [dm3] 2R_14480728_SNP [dm6]	A	C	1.249e^-4	0.676	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	1.250e^-4	0.676	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7442383	2L_7442383_SNP [dm3] 2L_7442383_SNP [dm6]	A	T	1.251e^-4	0.676	INTRON CG5973
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	1.252e^-4	0.676	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2R	5026871	2R_5026871_SNP [dm3] 2R_9139366_SNP [dm6]	C	T	1.257e^-4	0.676	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6429455	2R_6429455_SNP [dm3] 2R_10541950_SNP [dm6]	C	A	1.267e^-4	0.676	UPSTREAM lola INTRON lola EXON CR45135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
3L	12742351	3L_12742351_SNP [dm3] 3L_12749251_SNP [dm6]	T	A	1.279e^-4	0.676	UPSTREAM Klc & 1 other INTRON Klc
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	1.282e^-4	0.676	INTRON Octbeta3R
3L	7427428	3L_7427428_SNP [dm3] 3L_7434328_SNP [dm6]	C	T	1.289e^-4	0.676	SYNONYMOUS_CODING Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	14922274	3L_14922274_SNP [dm3] 3L_14929174_SNP [dm6]	T	C	1.292e^-4	0.676	INTRON DCX-EMAP
2R	11827753	2R_11827753_DEL [dm3] 2R_15940248_DEL [dm6]	TAT	T	1.298e^-4	0.676	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7091397	X_7091397_SNP [dm3] X_7197364_SNP [dm6]	A	G	1.300e^-4	0.676	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2936188	2L_2936188_SNP [dm3] 2L_2936188_SNP [dm6]	C	T	1.305e^-4	0.676	INTRON lilli
X	16747515	X_16747515_SNP [dm3] X_16853482_SNP [dm6]	C	T	1.306e^-4	0.676	UPSTREAM CG13003 INTRON CG13003
3R	21851800	3R_21851800_INS [dm3] 3R_26026078_INS [dm6]	A	AG	1.314e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13103210	3R_13103210_SNP [dm3] 3R_17277488_SNP [dm6]	A	G	1.317e^-4	0.676	INTERGENIC
3R	3270450	3R_3270450_SNP [dm3] 3R_7444728_SNP [dm6]	G	A	1.318e^-4	0.676	INTERGENIC
3R	21858550	3R_21858550_SNP [dm3] 3R_26032828_SNP [dm6]	G	T	1.319e^-4	0.676	UPSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19160522	X_19160522_SNP [dm3] X_19266489_SNP [dm6]	T	C	1.320e^-4	0.676	DOWNSTREAM CG8010 INTRON Vav
2R	6429819	2R_6429819_SNP [dm3] 2R_10542314_SNP [dm6]	A	T	1.321e^-4	0.676	UPSTREAM lola DOWNSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
2L	17152837	2L_17152837_SNP [dm3] 2L_17152837_SNP [dm6]	T	G	1.321e^-4	0.676	INTRON beat-IIIa & 1 other
3R	21851802	3R_21851802_SNP [dm3] 3R_26026080_SNP [dm6]	T	A	1.322e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8956432	3L_8956432_SNP [dm3] 3L_8963332_SNP [dm6]	G	A	1.326e^-4	0.676	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_sens
3R	21850921	3R_21850921_SNP [dm3] 3R_26025199_SNP [dm6]	C	G	1.326e^-4	0.676	UPSTREAM E_spl_m4-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2060126	2L_2060126_SNP [dm3] 2L_2060126_SNP [dm6]	A	G	1.331e^-4	0.676	INTRON dpr3
3L	1270910	3L_1270910_SNP [dm3] 3L_1270910_SNP [dm6]	T	G	1.338e^-4	0.676	INTRON CG9134
2L	9364916	2L_9364916_SNP [dm3] 2L_9364916_SNP [dm6]	G	C	1.340e^-4	0.676	EXON CR43404
2L	1019553	2L_1019553_SNP [dm3] 2L_1019553_SNP [dm6]	C	T	1.354e^-4	0.676	INTRON IA-2
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	1.361e^-4	0.676	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	1.363e^-4	0.676	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5019964	2R_5019964_SNP [dm3] 2R_9132459_SNP [dm6]	C	T	1.363e^-4	0.676	UPSTREAM Hydr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.366e^-4	0.676	INTRON fru
2L	14809309	2L_14809309_SNP [dm3] 2L_14809309_SNP [dm6]	A	T	1.367e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5257165	3L_5257165_SNP [dm3] 3L_5264065_SNP [dm6]	G	A	1.369e^-4	0.676	INTRON shep
2R	6305492	2R_6305492_SNP [dm3] 2R_10417987_SNP [dm6]	T	A	1.375e^-4	0.676	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12742709	3L_12742709_SNP [dm3] 3L_12749609_SNP [dm6]	T	C	1.380e^-4	0.676	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	18243338	2R_18243338_SNP [dm3] 2R_22355833_SNP [dm6]	A	T	1.383e^-4	0.676	INTRON Liprin-gamma
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	1.397e^-4	0.676	INTRON Cad87A
3R	16053022	3R_16053022_SNP [dm3] 3R_20227300_SNP [dm6]	T	A	1.398e^-4	0.676	INTRON Nlg4
X	5113091	X_5113091_SNP [dm3] X_5219058_SNP [dm6]	A	T	1.398e^-4	0.676	INTRON CG15465 & 1 other
2R	5024541	2R_5024541_SNP [dm3] 2R_9137036_SNP [dm6]	G	A	1.409e^-4	0.676	SYNONYMOUS_CODING alc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18282776	2R_18282776_SNP [dm3] 2R_22395271_SNP [dm6]	C	G	1.413e^-4	0.676	INTRON babos
3R	9727800	3R_9727800_SNP [dm3] 3R_13902078_SNP [dm6]	C	A	1.415e^-4	0.676	UTR_5_PRIME ems	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	1.417e^-4	0.676	INTRON Octbeta3R
X	13606673	X_13606673_SNP [dm3] X_13712640_SNP [dm6]	G	T	1.420e^-4	0.676	SYNONYMOUS_CODING NnaD INTRON CG9940
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	1.427e^-4	0.676	UPSTREAM CG3306 & 1 other INTERGENIC
3R	21857571	3R_21857571_INS [dm3] 3R_26031849_INS [dm6]	TTAT	CCCCCTC	1.428e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1259798	3L_1259798_SNP [dm3] 3L_1259798_SNP [dm6]	A	G	1.428e^-4	0.676	INTRON CG9134
3L	628269	3L_628269_SNP [dm3] 3L_628269_SNP [dm6]	G	C	1.431e^-4	0.676	UPSTREAM CR43334 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3923976	3L_3923976_SNP [dm3] 3L_3923976_SNP [dm6]	G	A	1.435e^-4	0.676	INTRON Eip63F-1
3R	21866468	3R_21866468_SNP [dm3] 3R_26040746_SNP [dm6]	C	A	1.439e^-4	0.676	NON_SYNONYMOUS_CODING E_spl_m8-HLH UPSTREAM gro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21856140	3R_21856140_SNP [dm3] 3R_26030418_SNP [dm6]	C	T	1.442e^-4	0.676	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	21857078	3R_21857078_SNP [dm3] 3R_26031356_SNP [dm6]	T	C	1.442e^-4	0.676	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21857531	3R_21857531_SNP [dm3] 3R_26031809_SNP [dm6]	T	A	1.442e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21857566	3R_21857566_SNP [dm3] 3R_26031844_SNP [dm6]	T	C	1.442e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21858273	3R_21858273_SNP [dm3] 3R_26032551_SNP [dm6]	T	G	1.442e^-4	0.676	UPSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21858274	3R_21858274_SNP [dm3] 3R_26032552_SNP [dm6]	G	T	1.442e^-4	0.676	UPSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21858948	3R_21858948_SNP [dm3] 3R_26033226_SNP [dm6]	C	G	1.442e^-4	0.676	UTR_3_PRIME E_spl_m6-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	21865152	3R_21865152_SNP [dm3] 3R_26039430_SNP [dm6]	T	C	1.442e^-4	0.676	UPSTREAM E_spl_m8-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21867836	3R_21867836_SNP [dm3] 3R_26042114_SNP [dm6]	G	A	1.442e^-4	0.676	UTR_5_PRIME gro UPSTREAM gro INTRON gro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6305493	2R_6305493_SNP [dm3] 2R_10417988_SNP [dm6]	T	C	1.451e^-4	0.677	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5026100	2R_5026100_SNP [dm3] 2R_9138595_SNP [dm6]	T	C	1.453e^-4	0.677	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21855775	3R_21855775_SNP [dm3] 3R_26030053_SNP [dm6]	T	C	1.461e^-4	0.677	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21857568	3R_21857568_SNP [dm3] 3R_26031846_SNP [dm6]	T	A	1.461e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15171652	2R_15171652_SNP [dm3] 2R_19284147_SNP [dm6]	G	A	1.463e^-4	0.677	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	13820155	2R_13820155_SNP [dm3] 2R_17932650_SNP [dm6]	A	T	1.466e^-4	0.677	INTERGENIC
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	1.478e^-4	0.679	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12762111	3R_12762111_SNP [dm3] 3R_16936389_SNP [dm6]	C	T	1.483e^-4	0.679	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11294687	2L_11294687_SNP [dm3] 2L_11294687_SNP [dm6]	T	C	1.489e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5036759	2R_5036759_SNP [dm3] 2R_9149254_SNP [dm6]	A	G	1.489e^-4	0.679	DOWNSTREAM CG30344 INTRON CG30345
3L	8314503	3L_8314503_SNP [dm3] 3L_8321403_SNP [dm6]	A	T	1.491e^-4	0.679	INTRON CG13670	TF binding site mE1_TFBS_cad
2L	7442421	2L_7442421_DEL [dm3] 2L_7442421_DEL [dm6]	TATGCT	T	1.493e^-4	0.679	INTRON CG5973
2R	14871705	2R_14871705_SNP [dm3] 2R_18984200_SNP [dm6]	T	G	1.497e^-4	0.679	INTERGENIC
3L	12742756	3L_12742756_SNP [dm3] 3L_12749656_SNP [dm6]	A	C	1.501e^-4	0.679	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2175409	3R_2175409_SNP [dm3] 3R_6349687_SNP [dm6]	T	C	1.503e^-4	0.679	NON_SYNONYMOUS_CODING Hr83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12491483	2L_12491483_SNP [dm3] 2L_12491483_SNP [dm6]	T	C	1.506e^-4	0.679	INTRON bun
3R	16324295	3R_16324295_DEL [dm3] 3R_20498573_DEL [dm6]	GGGCAATGCAAATATAATTT...	G	1.513e^-4	0.68	INTERGENIC
2R	16919974	2R_16919974_SNP [dm3] 2R_21032469_SNP [dm6]	A	G	1.515e^-4	0.68	INTERGENIC
X	3010519	X_3010519_INS [dm3] X_3116486_INS [dm6]	G	GTG	1.522e^-4	0.682	INTRON kirre
2L	549339	2L_549339_SNP [dm3] 2L_549339_SNP [dm6]	C	T	1.530e^-4	0.683	UTR_5_PRIME Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6905463	X_6905463_SNP [dm3] X_7011430_SNP [dm6]	C	T	1.543e^-4	0.684	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTRON CG32736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21868895	3R_21868895_SNP [dm3] 3R_26043173_SNP [dm6]	G	T	1.544e^-4	0.684	UTR_5_PRIME gro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	1.547e^-4	0.684	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	16607459	2L_16607459_SNP [dm3] 2L_16607459_SNP [dm6]	G	A	1.547e^-4	0.684	UTR_5_PRIME CG4631 DOWNSTREAM CG31815 INTRON CG42389
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	1.554e^-4	0.685	INTRON kar	TF binding site mE1_TFBS_cad
3L	4104457	3L_4104457_SNP [dm3] 3L_4104457_SNP [dm6]	G	A	1.555e^-4	0.685	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11016484	3L_11016484_DEL [dm3] 3L_11023384_DEL [dm6]	TTAATTTGTAATTTGT...	T	1.558e^-4	0.685	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
3R	21998515	3R_21998515_SNP [dm3] 3R_26172793_SNP [dm6]	A	G	1.570e^-4	0.688	INTRON CG31323
2L	15768720	2L_15768720_SNP [dm3] 2L_15768720_SNP [dm6]	A	T	1.579e^-4	0.69	UTR_3_PRIME Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9308579	2R_9308579_SNP [dm3] 2R_13421074_SNP [dm6]	C	T	1.583e^-4	0.691	SYNONYMOUS_CODING CG42321
3L	15377969	3L_15377969_SNP [dm3] 3L_15384869_SNP [dm6]	G	T	1.589e^-4	0.691	INTERGENIC
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	1.592e^-4	0.691	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	7976077	3R_7976077_SNP [dm3] 3R_12150355_SNP [dm6]	T	G	1.605e^-4	0.692	INTRON dpr15
2R	4454886	2R_4454886_SNP [dm3] 2R_8567381_SNP [dm6]	G	A	1.605e^-4	0.692	UPSTREAM Cyp6a14 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	5113223	X_5113223_INS [dm3] X_5219190_INS [dm6]	A	ATA	1.609e^-4	0.692	INTRON CG15465 & 1 other
3L	8974757	3L_8974757_SNP [dm3] 3L_8981657_SNP [dm6]	A	T	1.609e^-4	0.692	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
3R	21867743	3R_21867743_SNP [dm3] 3R_26042021_SNP [dm6]	T	C	1.619e^-4	0.695	UPSTREAM gro INTRON gro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1070509	3L_1070509_SNP [dm3] 3L_1070509_SNP [dm6]	T	G	1.630e^-4	0.698	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3L	4695400	3L_4695400_SNP [dm3] 3L_4695400_SNP [dm6]	T	C	1.642e^-4	0.702	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13797439	3R_13797439_SNP [dm3] 3R_17971717_SNP [dm6]	A	T	1.654e^-4	0.705	INTRON cpo
2L	1096320	2L_1096320_SNP [dm3] 2L_1096320_SNP [dm6]	A	T	1.659e^-4	0.705	INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6887676	2L_6887676_SNP [dm3] 2L_6887676_SNP [dm6]	A	T	1.662e^-4	0.705	INTRON Nlg2
2R	6333756	2R_6333756_SNP [dm3] 2R_10446251_SNP [dm6]	C	T	1.671e^-4	0.705	INTRON Galphao
2R	20214225	2R_20214225_SNP [dm3] 2R_24326702_SNP [dm6]	T	G	1.673e^-4	0.705	INTRON CR44810
2R	15171695	2R_15171695_SNP [dm3] 2R_19284190_SNP [dm6]	T	A	1.674e^-4	0.705	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	15748178	2L_15748178_SNP [dm3] 2L_15748178_SNP [dm6]	T	A	1.676e^-4	0.705	UPSTREAM CycE EXON CR44866	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19242268	2R_19242268_SNP [dm3] 2R_23354745_SNP [dm6]	T	G	1.683e^-4	0.706	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18257904	3L_18257904_SNP [dm3] 3L_18264804_SNP [dm6]	C	A	1.699e^-4	0.709	INTERGENIC
3L	1260886	3L_1260886_SNP [dm3] 3L_1260886_SNP [dm6]	T	A	1.700e^-4	0.709	INTRON CG9134
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	1.702e^-4	0.709	INTERGENIC
2L	11930507	2L_11930507_SNP [dm3] 2L_11930507_SNP [dm6]	C	T	1.711e^-4	0.709	INTERGENIC
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	1.717e^-4	0.709	INTRON CG42524
2L	11458556	2L_11458556_SNP [dm3] 2L_11458556_SNP [dm6]	A	C	1.718e^-4	0.709	INTERGENIC
2R	15171647	2R_15171647_SNP [dm3] 2R_19284142_SNP [dm6]	T	A	1.720e^-4	0.709	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6308014	2R_6308014_SNP [dm3] 2R_10420509_SNP [dm6]	C	T	1.721e^-4	0.709	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1270683	3L_1270683_SNP [dm3] 3L_1270683_SNP [dm6]	G	A	1.727e^-4	0.711	INTRON CG9134
3R	26454700	3R_26454700_SNP [dm3] 3R_30628978_SNP [dm6]	T	C	1.745e^-4	0.715	UTR_5_PRIME CG2267
3L	4473317	3L_4473317_SNP [dm3] 3L_4473317_SNP [dm6]	G	A	1.749e^-4	0.715	SYNONYMOUS_CODING CG11349 DOWNSTREAM CG32248
2R	6307267	2R_6307267_SNP [dm3] 2R_10419762_SNP [dm6]	A	G	1.749e^-4	0.715	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20215325	2R_20215325_SNP [dm3] 2R_24327802_SNP [dm6]	T	A	1.759e^-4	0.717	INTRON CR44810
3L	12661260	3L_12661260_SNP [dm3] 3L_12668160_SNP [dm6]	G	C	1.761e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1270745	3L_1270745_SNP [dm3] 3L_1270745_SNP [dm6]	G	T	1.772e^-4	0.719	INTRON CG9134
2R	6429556	2R_6429556_SNP [dm3] 2R_10542051_SNP [dm6]	A	C	1.787e^-4	0.724	UPSTREAM lola DOWNSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
2R	18283501	2R_18283501_SNP [dm3] 2R_22395996_SNP [dm6]	A	T	1.791e^-4	0.724	INTRON babos	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3236390	3R_3236390_SNP [dm3] 3R_7410668_SNP [dm6]	A	T	1.801e^-4	0.727	INTERGENIC
3R	21852269	3R_21852269_SNP [dm3] 3R_26026547_SNP [dm6]	A	C	1.806e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6146573	2L_6146573_SNP [dm3] 2L_6146573_SNP [dm6]	G	A	1.817e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	1.818e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	1.818e^-4	0.727	INTRON GC1
2R	14570074	2R_14570074_SNP [dm3] 2R_18682569_SNP [dm6]	C	A	1.832e^-4	0.727	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21855339	3R_21855339_SNP [dm3] 3R_26029617_SNP [dm6]	G	C	1.832e^-4	0.727	SYNONYMOUS_CODING E_spl_m5-HLH	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	1.834e^-4	0.727	INTERGENIC
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	1.837e^-4	0.727	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
2R	20053130	2R_20053130_SNP [dm3] 2R_24165607_SNP [dm6]	A	G	1.838e^-4	0.727	INTRON CG3328
2R	9447244	2R_9447244_SNP [dm3] 2R_13559739_SNP [dm6]	T	A	1.846e^-4	0.727	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14691155	3L_14691155_SNP [dm3] 3L_14698055_SNP [dm6]	G	T	1.851e^-4	0.727	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
2L	7298130	2L_7298130_SNP [dm3] 2L_7298130_SNP [dm6]	G	T	1.855e^-4	0.727	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	12873539	X_12873539_SNP [dm3] X_12979506_SNP [dm6]	G	T	1.862e^-4	0.727	INTERGENIC
2R	1695079	2R_1695079_SNP [dm3] 2R_5807574_SNP [dm6]	G	C	1.863e^-4	0.727	INTRON dpr12
3L	7424978	3L_7424978_SNP [dm3] 3L_7431878_SNP [dm6]	G	A	1.874e^-4	0.727	INTRON CG42458
2R	6308031	2R_6308031_SNP [dm3] 2R_10420526_SNP [dm6]	A	G	1.884e^-4	0.727	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18283534	2R_18283534_DEL [dm3] 2R_22396029_DEL [dm6]	ATTAATGAGCTTCACCCAAA...	A	1.885e^-4	0.727	INTRON babos	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	1.892e^-4	0.727	DOWNSTREAM ppk26 INTERGENIC
2L	12126610	2L_12126610_SNP [dm3] 2L_12126610_SNP [dm6]	T	C	1.896e^-4	0.727	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	12177252	3L_12177252_SNP [dm3] 3L_12184152_SNP [dm6]	G	A	1.901e^-4	0.727	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
X	9938934	X_9938934_SNP [dm3] X_10044901_SNP [dm6]	A	T	1.903e^-4	0.727	UTR_3_PRIME Cht6 DOWNSTREAM CR45185 & 1 other INTRON Cht6
2R	9488611	2R_9488611_DEL [dm3] 2R_13601106_DEL [dm6]	AATATACATGTT...	A	1.906e^-4	0.727	UPSTREAM CG43058 INTERGENIC
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	1.918e^-4	0.727	DOWNSTREAM CG33098 INTRON CG34402
3L	12661279	3L_12661279_SNP [dm3] 3L_12668179_SNP [dm6]	C	A	1.923e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14322413	X_14322413_SNP [dm3] X_14428380_SNP [dm6]	T	C	1.925e^-4	0.727	INTRON dpr8
2R	6308033	2R_6308033_SNP [dm3] 2R_10420528_SNP [dm6]	C	T	1.937e^-4	0.727	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15171687	2R_15171687_SNP [dm3] 2R_19284182_SNP [dm6]	A	G	1.938e^-4	0.727	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	13680338	3L_13680338_SNP [dm3] 3L_13687238_SNP [dm6]	C	T	1.938e^-4	0.727	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15766178	2L_15766178_SNP [dm3] 2L_15766178_SNP [dm6]	A	T	1.939e^-4	0.727	UTR_3_PRIME CG3793 & 1 other DOWNSTREAM wek & 1 other
X	17195478	X_17195478_SNP [dm3] X_17301445_SNP [dm6]	G	T	1.941e^-4	0.727	UTR_5_PRIME Fim UPSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8370580	2L_8370580_SNP [dm3] 2L_8370580_SNP [dm6]	G	T	1.946e^-4	0.727	UTR_5_PRIME CG17292 DOWNSTREAM Pp2A-29B EXON CR45341
3R	25190423	3R_25190423_SNP [dm3] 3R_29364701_SNP [dm6]	C	T	1.958e^-4	0.727	INTERGENIC
3L	3470254	3L_3470254_DEL [dm3] 3L_3470254_DEL [dm6]	TT	T	1.959e^-4	0.727	INTRON CG14971
3R	6883585	3R_6883585_INS [dm3] 3R_11057863_INS [dm6]	C	CGCTGAAAC	1.962e^-4	0.727	INTERGENIC
3L	2486755	3L_2486755_DEL [dm3] 3L_2486755_DEL [dm6]	GC	G	1.963e^-4	0.727	INTRON CG45186	TF binding site BDTNP1_TFBS_dl
3R	3270516	3R_3270516_SNP [dm3] 3R_7444794_SNP [dm6]	A	T	1.965e^-4	0.727	INTERGENIC
3R	21851934	3R_21851934_SNP [dm3] 3R_26026212_SNP [dm6]	C	T	1.969e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21839907	3R_21839907_SNP [dm3] 3R_26014185_SNP [dm6]	A	T	1.977e^-4	0.727	UPSTREAM Kaz-m1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	17221699	2R_17221699_DEL [dm3] 2R_21334194_DEL [dm6]	GAAG	G	1.978e^-4	0.727	DOWNSTREAM snoRNA:Psi18S-1389a INTRON dom EXON snoRNA:Psi18S-1389b
3L	2487805	3L_2487805_SNP [dm3] 3L_2487805_SNP [dm6]	T	C	1.978e^-4	0.727	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18282941	2R_18282941_DEL [dm3] 2R_22395436_DEL [dm6]	AA	A	1.986e^-4	0.727	INTRON babos
3R	16053019	3R_16053019_SNP [dm3] 3R_20227297_SNP [dm6]	T	G	1.988e^-4	0.727	INTRON Nlg4
2R	14222040	2R_14222040_INS [dm3] 2R_18334535_INS [dm6]	A	AAAATCACATA...	1.990e^-4	0.727	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1248908	3L_1248908_SNP [dm3] 3L_1248908_SNP [dm6]	C	T	1.990e^-4	0.727	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	1.990e^-4	0.727	INTRON CG15630
3L	14082273	3L_14082273_SNP [dm3] 3L_14089173_SNP [dm6]	A	G	1.997e^-4	0.727	INTERGENIC
2L	15785230	2L_15785230_SNP [dm3] 2L_15785230_SNP [dm6]	G	A	1.997e^-4	0.727	NON_SYNONYMOUS_CODING CG18109
3L	5612664	3L_5612664_SNP [dm3] 3L_5619564_SNP [dm6]	C	G	2.001e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18334373	3L_18334373_DEL [dm3] 3L_18341273_DEL [dm6]	CT	C	2.005e^-4	0.727	INTERGENIC
2R	10003023	2R_10003023_SNP [dm3] 2R_14115518_SNP [dm6]	G	A	2.007e^-4	0.727	INTRON Prosap
3L	18832590	3L_18832590_SNP [dm3] 3L_18839490_SNP [dm6]	T	C	2.022e^-4	0.727	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25078765	3R_25078765_SNP [dm3] 3R_29253043_SNP [dm6]	G	A	2.022e^-4	0.727	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	8846255	3L_8846255_SNP [dm3] 3L_8853155_SNP [dm6]	A	T	2.023e^-4	0.727	INTRON dally
3L	15378058	3L_15378058_SNP [dm3] 3L_15384958_SNP [dm6]	A	T	2.025e^-4	0.727	INTERGENIC
3R	20913845	3R_20913845_SNP [dm3] 3R_25088123_SNP [dm6]	A	G	2.026e^-4	0.727	INTERGENIC
3L	12283493	3L_12283493_SNP [dm3] 3L_12290393_SNP [dm6]	A	T	2.028e^-4	0.727	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	2.028e^-4	0.727	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	2.040e^-4	0.727	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3L	12742614	3L_12742614_SNP [dm3] 3L_12749514_SNP [dm6]	A	G	2.041e^-4	0.727	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl
3R	8233374	3R_8233374_SNP [dm3] 3R_12407652_SNP [dm6]	C	G	2.043e^-4	0.727	NON_SYNONYMOUS_CODING CG5167 UPSTREAM CG5196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15171693	2R_15171693_SNP [dm3] 2R_19284188_SNP [dm6]	T	G	2.043e^-4	0.727	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	19669970	2R_19669970_SNP [dm3] 2R_23782447_SNP [dm6]	T	C	2.049e^-4	0.727	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2R	14871642	2R_14871642_SNP [dm3] 2R_18984137_SNP [dm6]	C	A	2.061e^-4	0.727	INTERGENIC
3L	21039350	3L_21039350_SNP [dm3] 3L_21046250_SNP [dm6]	T	A	2.061e^-4	0.727	INTRON siz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5494981	3R_5494981_SNP [dm3] 3R_9669259_SNP [dm6]	C	T	2.064e^-4	0.727	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
2L	15817156	2L_15817156_SNP [dm3] 2L_15817156_SNP [dm6]	T	C	2.066e^-4	0.727	INTERGENIC
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	2.066e^-4	0.727	UPSTREAM CG3306 & 1 other INTERGENIC
2R	13820145	2R_13820145_SNP [dm3] 2R_17932640_SNP [dm6]	C	G	2.072e^-4	0.727	INTERGENIC
X	6905232	X_6905232_SNP [dm3] X_7011199_SNP [dm6]	C	T	2.075e^-4	0.727	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	2.076e^-4	0.727	INTRON Cad87A
3R	23161744	3R_23161744_SNP [dm3] 3R_27336022_SNP [dm6]	A	G	2.078e^-4	0.727	INTERGENIC
3R	19573933	3R_19573933_SNP [dm3] 3R_23748211_SNP [dm6]	G	T	2.082e^-4	0.727	NON_SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
2L	9625405	2L_9625405_SNP [dm3] 2L_9625405_SNP [dm6]	C	T	2.085e^-4	0.727	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	2.096e^-4	0.727	INTRON CG14877
2L	1095726	2L_1095726_SNP [dm3] 2L_1095726_SNP [dm6]	T	C	2.097e^-4	0.727	INTRON CG4629	TF binding site mE1_TFBS_cad
3L	2487811	3L_2487811_SNP [dm3] 3L_2487811_SNP [dm6]	T	G	2.100e^-4	0.727	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1272417	3L_1272417_SNP [dm3] 3L_1272417_SNP [dm6]	G	A	2.106e^-4	0.727	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11511131	2R_11511131_SNP [dm3] 2R_15623626_SNP [dm6]	C	A	2.113e^-4	0.727	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	4758283	3L_4758283_SNP [dm3] 3L_4758283_SNP [dm6]	C	T	2.119e^-4	0.727	SYNONYMOUS_CODING CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15785132	2L_15785132_SNP [dm3] 2L_15785132_SNP [dm6]	C	G	2.120e^-4	0.727	NON_SYNONYMOUS_CODING CG18109
2R	13530118	2R_13530118_SNP [dm3] 2R_17642613_SNP [dm6]	C	T	2.120e^-4	0.727	INTERGENIC
3R	2171713	3R_2171713_SNP [dm3] 3R_6345991_SNP [dm6]	G	T	2.122e^-4	0.727	UPSTREAM CG18048 & 1 other DOWNSTREAM CG17919 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13606565	X_13606565_SNP [dm3] X_13712532_SNP [dm6]	A	G	2.141e^-4	0.727	INTRON CG9940 & 1 other
X	13606606	X_13606606_SNP [dm3] X_13712573_SNP [dm6]	A	G	2.141e^-4	0.727	INTRON CG9940 & 1 other
2R	10473364	2R_10473364_SNP [dm3] 2R_14585859_SNP [dm6]	C	T	2.143e^-4	0.727	UTR_3_PRIME ttv DOWNSTREAM ttv
3L	6567946	3L_6567946_SNP [dm3] 3L_6574846_SNP [dm6]	G	A	2.144e^-4	0.727	INTRON CG18769 & 1 other
3L	10893620	3L_10893620_SNP [dm3] 3L_10900520_SNP [dm6]	A	G	2.147e^-4	0.727	INTERGENIC
3R	10663187	3R_10663187_SNP [dm3] 3R_14837465_SNP [dm6]	G	A	2.148e^-4	0.727	INTRON btsz
2R	15171741	2R_15171741_SNP [dm3] 2R_19284236_SNP [dm6]	T	A	2.151e^-4	0.727	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17792534	2R_17792534_DEL [dm3] 2R_21905029_DEL [dm6]	TCAGCCAGT	T	2.159e^-4	0.727	INTRON Fili
3L	5613200	3L_5613200_SNP [dm3] 3L_5620100_SNP [dm6]	T	A	2.169e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	18837298	3L_18837298_INS [dm3] 3L_18844198_INS [dm6]	A	GT	2.171e^-4	0.727	INTRON Indy
3L	6859842	3L_6859842_SNP [dm3] 3L_6866742_SNP [dm6]	G	T	2.182e^-4	0.727	UPSTREAM CR45115 INTERGENIC
2R	13820146	2R_13820146_SNP [dm3] 2R_17932641_SNP [dm6]	G	C	2.184e^-4	0.727	INTERGENIC
X	16805594	X_16805594_INS [dm3] X_16911561_INS [dm6]	A	ACA	2.190e^-4	0.727	INTRON CR44754
2R	12027396	2R_12027396_SNP [dm3] 2R_16139891_SNP [dm6]	T	G	2.194e^-4	0.727	INTRON Got1
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.204e^-4	0.727	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5021272	2R_5021272_SNP [dm3] 2R_9133767_SNP [dm6]	C	T	2.208e^-4	0.727	SYNONYMOUS_CODING Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22034438	3R_22034438_SNP [dm3] 3R_26208716_SNP [dm6]	T	C	2.213e^-4	0.727	INTRON CR44320
2L	1575805	2L_1575805_SNP [dm3] 2L_1575805_SNP [dm6]	A	G	2.214e^-4	0.727	INTRON haf
2R	18562126	2R_18562126_SNP [dm3] 2R_22674621_SNP [dm6]	A	G	2.220e^-4	0.727	UPSTREAM CR44761 INTERGENIC	enhancer mE1_CBP_Enhancers
2L	18402764	2L_18402764_SNP [dm3] 2L_18402764_SNP [dm6]	A	T	2.227e^-4	0.727	INTERGENIC
2R	13820101	2R_13820101_SNP [dm3] 2R_17932596_SNP [dm6]	G	A	2.230e^-4	0.727	INTERGENIC
3R	23030895	3R_23030895_DEL [dm3] 3R_27205173_DEL [dm6]	TGTAATTACTT...	T	2.230e^-4	0.727	INTERGENIC	regulatory region REDfly_CRMs
3L	19963863	3L_19963863_SNP [dm3] 3L_19970763_SNP [dm6]	T	G	2.233e^-4	0.727	INTRON Ac76E	TF binding site mE1_TFBS_chinmo
2L	4972030	2L_4972030_SNP [dm3] 2L_4972030_SNP [dm6]	T	C	2.235e^-4	0.727	SYNONYMOUS_CODING CG14043 UPSTREAM l_2_05714 INTRON l_2_05714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	16986649	X_16986649_SNP [dm3] X_17092616_SNP [dm6]	G	A	2.236e^-4	0.727	INTRON CG16700 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6308069	2R_6308069_SNP [dm3] 2R_10420564_SNP [dm6]	A	C	2.245e^-4	0.727	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	2.247e^-4	0.727	DOWNSTREAM CG15483 INTERGENIC
2L	10939798	2L_10939798_SNP [dm3] 2L_10939798_SNP [dm6]	T	C	2.247e^-4	0.727	INTRON dpr2
2R	18526885	2R_18526885_SNP [dm3] 2R_22639380_SNP [dm6]	C	T	2.248e^-4	0.727	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	12153082	3R_12153082_SNP [dm3] 3R_16327360_SNP [dm6]	T	G	2.249e^-4	0.727	UPSTREAM CG17930 DOWNSTREAM CG17929 INTRON Sulf1
2R	8382072	2R_8382072_SNP [dm3] 2R_12494567_SNP [dm6]	G	C	2.249e^-4	0.727	INTRON fdl	TF binding site mE1_TFBS_cad
X	12507534	X_12507534_SNP [dm3] X_12613501_SNP [dm6]	C	A	2.250e^-4	0.727	DOWNSTREAM CR45621 INTRON CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14736478	3L_14736478_SNP [dm3] 3L_14743378_SNP [dm6]	T	C	2.253e^-4	0.727	INTRON ome	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21851859	3R_21851859_SNP [dm3] 3R_26026137_SNP [dm6]	A	T	2.254e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6308167	2R_6308167_SNP [dm3] 2R_10420662_SNP [dm6]	T	G	2.255e^-4	0.727	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	20054447	2R_20054447_SNP [dm3] 2R_24166924_SNP [dm6]	A	T	2.265e^-4	0.727	UPSTREAM CG3328 INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	10663528	3R_10663528_SNP [dm3] 3R_14837806_SNP [dm6]	C	T	2.266e^-4	0.727	INTRON btsz
3L	1720447	3L_1720447_SNP [dm3] 3L_1720447_SNP [dm6]	C	T	2.266e^-4	0.727	DOWNSTREAM CG18171 INTRON drpr
3L	12661274	3L_12661274_SNP [dm3] 3L_12668174_SNP [dm6]	C	T	2.272e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10105925	2R_10105925_SNP [dm3] 2R_14218420_SNP [dm6]	G	A	2.288e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	11553285	3R_11553285_INS [dm3] 3R_15727563_INS [dm6]	A	AA	2.290e^-4	0.728	INTERGENIC
3R	13313211	3R_13313211_SNP [dm3] 3R_17487489_SNP [dm6]	C	T	2.295e^-4	0.728	INTRON Dscam3
3R	17855968	3R_17855968_SNP [dm3] 3R_22030246_SNP [dm6]	G	T	2.300e^-4	0.728	SPLICE_SITE_REGION CG13409 SYNONYMOUS_CODING CG13409 DOWNSTREAM ND42	TF binding site mE1_TFBS_cad
X	9106193	X_9106193_SNP [dm3] X_9212160_SNP [dm6]	A	G	2.301e^-4	0.728	INTERGENIC
2R	8379434	2R_8379434_SNP [dm3] 2R_12491929_SNP [dm6]	C	T	2.302e^-4	0.728	UPSTREAM fdl INTRON fdl
X	10886474	X_10886474_SNP [dm3] X_10992441_SNP [dm6]	C	A	2.313e^-4	0.728	INTRON CG42339
3L	11016441	3L_11016441_SNP [dm3] 3L_11023341_SNP [dm6]	G	A	2.314e^-4	0.728	UPSTREAM Fad2 INTERGENIC	regulatory region REDfly_CRMs
2R	15171790	2R_15171790_SNP [dm3] 2R_19284285_SNP [dm6]	G	A	2.316e^-4	0.728	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	21861130	3R_21861130_SNP [dm3] 3R_26035408_SNP [dm6]	C	A	2.322e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3495429	3L_3495429_SNP [dm3] 3L_3495429_SNP [dm6]	T	C	2.323e^-4	0.728	INTRON CG42324
3L	10744013	3L_10744013_SNP [dm3] 3L_10750913_SNP [dm6]	A	G	2.326e^-4	0.728	INTERGENIC
2R	20053086	2R_20053086_SNP [dm3] 2R_24165563_SNP [dm6]	G	C	2.333e^-4	0.728	INTRON CG3328
2R	13820099	2R_13820099_SNP [dm3] 2R_17932594_SNP [dm6]	A	T	2.339e^-4	0.728	INTERGENIC
2R	13820114	2R_13820114_MNP [dm3] 2R_17932609_MNP [dm6]	GCA	TGT	2.339e^-4	0.728	INTERGENIC
3R	23161801	3R_23161801_SNP [dm3] 3R_27336079_SNP [dm6]	G	A	2.339e^-4	0.728	INTERGENIC
3R	21851817	3R_21851817_SNP [dm3] 3R_26026095_SNP [dm6]	T	C	2.341e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4472895	3L_4472895_SNP [dm3] 3L_4472895_SNP [dm6]	G	A	2.348e^-4	0.728	UPSTREAM CG11349 DOWNSTREAM CG32248 INTERGENIC
2L	6337854	2L_6337854_SNP [dm3] 2L_6337854_SNP [dm6]	G	A	2.348e^-4	0.728	UPSTREAM Cpr INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4971982	2L_4971982_SNP [dm3] 2L_4971982_SNP [dm6]	A	C	2.363e^-4	0.73	SYNONYMOUS_CODING CG14043 UPSTREAM l_2_05714 INTRON l_2_05714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	26339331	3R_26339331_SNP [dm3] 3R_30513609_SNP [dm6]	T	A	2.379e^-4	0.73	SYNONYMOUS_CODING CG31524
2L	17886276	2L_17886276_SNP [dm3] 2L_17886276_SNP [dm6]	G	A	2.381e^-4	0.73	INTERGENIC
3L	11292650	3L_11292650_DEL [dm3] 3L_11299550_DEL [dm6]	GAG	G	2.382e^-4	0.73	INTERGENIC
X	11765174	X_11765174_SNP [dm3] X_11871141_SNP [dm6]	A	G	2.394e^-4	0.73	UTR_3_PRIME CG1847 DOWNSTREAM CG11802
2R	12527088	2R_12527088_SNP [dm3] 2R_16639583_SNP [dm6]	C	T	2.402e^-4	0.73	INTRON Alk	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18531134	2R_18531134_SNP [dm3] 2R_22643629_SNP [dm6]	A	C	2.407e^-4	0.73	NON_SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
3L	4477850	3L_4477850_SNP [dm3] 3L_4477850_SNP [dm6]	C	T	2.409e^-4	0.73	INTERGENIC
3R	10664770	3R_10664770_SNP [dm3] 3R_14839048_SNP [dm6]	C	T	2.409e^-4	0.73	INTRON btsz
2R	9681349	2R_9681349_SNP [dm3] 2R_13793844_SNP [dm6]	C	A	2.412e^-4	0.73	UPSTREAM Cpr50Cb INTERGENIC
3R	21854313	3R_21854313_SNP [dm3] 3R_26028591_SNP [dm6]	T	C	2.420e^-4	0.73	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5568361	3L_5568361_SNP [dm3] 3L_5575261_SNP [dm6]	A	C	2.423e^-4	0.73	UPSTREAM Msr-110 INTRON Msr-110
2R	19227208	2R_19227208_SNP [dm3] 2R_23339685_SNP [dm6]	T	C	2.424e^-4	0.73	INTERGENIC
2R	6308008	2R_6308008_SNP [dm3] 2R_10420503_SNP [dm6]	T	G	2.426e^-4	0.73	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8382205	2R_8382205_SNP [dm3] 2R_12494700_SNP [dm6]	C	T	2.431e^-4	0.73	UPSTREAM s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13492330	2L_13492330_SNP [dm3] 2L_13492330_SNP [dm6]	G	A	2.434e^-4	0.73	INTRON CG42784
X	10550006	X_10550006_SNP [dm3] X_10655973_SNP [dm6]	C	T	2.434e^-4	0.73	INTRON X11Lbeta
2R	6308168	2R_6308168_SNP [dm3] 2R_10420663_SNP [dm6]	A	C	2.436e^-4	0.73	UTR_3_PRIME CG11825 DOWNSTREAM Prx2540-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	11892865	3L_11892865_SNP [dm3] 3L_11899765_SNP [dm6]	G	A	2.437e^-4	0.73	INTRON CG44837 & 1 other
2R	5052841	2R_5052841_DEL [dm3] 2R_9165336_DEL [dm6]	TT	T	2.440e^-4	0.73	UPSTREAM Rad51C & 1 other INTERGENIC
3L	8974269	3L_8974269_SNP [dm3] 3L_8981169_SNP [dm6]	G	A	2.444e^-4	0.73	UPSTREAM CG13314 INTERGENIC
3L	7424565	3L_7424565_SNP [dm3] 3L_7431465_SNP [dm6]	C	A	2.444e^-4	0.73	INTRON CG42458
2L	15555244	2L_15555244_SNP [dm3] 2L_15555244_SNP [dm6]	G	A	2.446e^-4	0.73	INTRON kek3
X	6905291	X_6905291_SNP [dm3] X_7011258_SNP [dm6]	T	G	2.456e^-4	0.731	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	2.457e^-4	0.731	INTRON sr
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	2.464e^-4	0.731	INTRON beat-Vc
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	2.464e^-4	0.731	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3R	15101254	3R_15101254_SNP [dm3] 3R_19275532_SNP [dm6]	T	C	2.478e^-4	0.734	INTERGENIC
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	2.498e^-4	0.734	INTRON Octbeta3R
3L	466109	3L_466109_SNP [dm3] 3L_466109_SNP [dm6]	A	C	2.508e^-4	0.734	INTRON klar
2R	16353362	2R_16353362_SNP [dm3] 2R_20465857_SNP [dm6]	G	A	2.509e^-4	0.734	INTRON CG12484
3L	11451459	3L_11451459_SNP [dm3] 3L_11458359_SNP [dm6]	G	A	2.512e^-4	0.734	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3R	8560942	3R_8560942_MNP [dm3] 3R_12735220_MNP [dm6]	AAG	TTT	2.512e^-4	0.734	INTERGENIC
2R	5025985	2R_5025985_SNP [dm3] 2R_9138480_SNP [dm6]	G	A	2.512e^-4	0.734	UPSTREAM CG8788 & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8561205	3R_8561205_SNP [dm3] 3R_12735483_SNP [dm6]	A	T	2.514e^-4	0.734	INTERGENIC
2R	15172086	2R_15172086_SNP [dm3] 2R_19284581_SNP [dm6]	G	A	2.533e^-4	0.734	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3L	1258402	3L_1258402_SNP [dm3] 3L_1258402_SNP [dm6]	A	C	2.534e^-4	0.734	INTRON CG9134
2R	4644569	2R_4644569_SNP [dm3] 2R_8757064_SNP [dm6]	G	A	2.537e^-4	0.734	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3889187	X_3889187_SNP [dm3] X_3995154_SNP [dm6]	G	A	2.540e^-4	0.734	INTERGENIC
3R	2171310	3R_2171310_SNP [dm3] 3R_6345588_SNP [dm6]	C	G	2.542e^-4	0.734	SYNONYMOUS_CODING SmD2 UPSTREAM CG18048 DOWNSTREAM CG17919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8234000	3R_8234000_SNP [dm3] 3R_12408278_SNP [dm6]	A	G	2.544e^-4	0.734	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	8953710	3L_8953710_SNP [dm3] 3L_8960610_SNP [dm6]	T	C	2.553e^-4	0.734	SYNONYMOUS_CODING CG13313 DOWNSTREAM CG5660	TF binding site BDTNP1_TFBS_sna
3R	10653148	3R_10653148_SNP [dm3] 3R_14827426_SNP [dm6]	G	T	2.554e^-4	0.734	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	14884638	2R_14884638_SNP [dm3] 2R_18997133_SNP [dm6]	T	G	2.559e^-4	0.734	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad
3R	6884177	3R_6884177_DEL [dm3] 3R_11058455_DEL [dm6]	CAGCACGCCACAGC...	C	2.560e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4758419	3L_4758419_SNP [dm3] 3L_4758419_SNP [dm6]	T	C	2.561e^-4	0.734	UTR_3_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	12325242	3R_12325242_SNP [dm3] 3R_16499520_SNP [dm6]	G	A	2.564e^-4	0.734	UPSTREAM Gr89a INTRON decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5036421	2R_5036421_SNP [dm3] 2R_9148916_SNP [dm6]	A	T	2.564e^-4	0.734	SYNONYMOUS_CODING CG30345 DOWNSTREAM CG30344
2R	4645748	2R_4645748_SNP [dm3] 2R_8758243_SNP [dm6]	C	T	2.569e^-4	0.734	SYNONYMOUS_CODING CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	8560964	3R_8560964_SNP [dm3] 3R_12735242_SNP [dm6]	C	T	2.576e^-4	0.734	INTERGENIC
3R	11007534	3R_11007534_SNP [dm3] 3R_15181812_SNP [dm6]	C	T	2.580e^-4	0.734	UPSTREAM Mf INTRON Gyc88E
X	16742505	X_16742505_SNP [dm3] X_16848472_SNP [dm6]	C	T	2.582e^-4	0.734	SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_chinmo
X	2236434	X_2236434_SNP [dm3] X_2342401_SNP [dm6]	A	C	2.588e^-4	0.734	INTRON phl	TF binding site BDTNP1_TFBS_dl
3L	11026412	3L_11026412_SNP [dm3] 3L_11033312_SNP [dm6]	A	G	2.588e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10661322	3R_10661322_SNP [dm3] 3R_14835600_SNP [dm6]	G	A	2.595e^-4	0.734	INTRON btsz
2R	13820118	2R_13820118_SNP [dm3] 2R_17932613_SNP [dm6]	A	C	2.602e^-4	0.734	INTERGENIC
2L	15737791	2L_15737791_SNP [dm3] 2L_15737791_SNP [dm6]	A	G	2.604e^-4	0.734	NON_SYNONYMOUS_CODING CycE	regulatory region FlyBase REDfly_CRMs
2R	18122805	2R_18122805_SNP [dm3] 2R_22235300_SNP [dm6]	G	T	2.610e^-4	0.734	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10858885	2L_10858885_SNP [dm3] 2L_10858885_SNP [dm6]	A	C	2.611e^-4	0.734	UPSTREAM ial INTRON Stam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23848544	3R_23848544_SNP [dm3] 3R_28022822_SNP [dm6]	G	A	2.613e^-4	0.734	INTERGENIC
2R	17975313	2R_17975313_SNP [dm3] 2R_22087808_SNP [dm6]	A	C	2.614e^-4	0.734	UPSTREAM CG13502 INTRON CG13502	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	2.617e^-4	0.734	INTRON CG18769
3L	1260896	3L_1260896_SNP [dm3] 3L_1260896_SNP [dm6]	T	A	2.619e^-4	0.734	INTRON CG9134
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	2.624e^-4	0.734	INTRON ush	regulatory region REDfly_CRMs
3R	23882683	3R_23882683_SNP [dm3] 3R_28056961_SNP [dm6]	A	G	2.625e^-4	0.734	INTRON CG34362
3R	23442946	3R_23442946_SNP [dm3] 3R_27617224_SNP [dm6]	A	C	2.629e^-4	0.734	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2R	9488661	2R_9488661_SNP [dm3] 2R_13601156_SNP [dm6]	T	A	2.634e^-4	0.734	UPSTREAM CG43058 INTERGENIC
3L	11565717	3L_11565717_SNP [dm3] 3L_11572617_SNP [dm6]	C	A	2.638e^-4	0.734	UTR_3_PRIME CG33267 DOWNSTREAM CG33490
3L	4473398	3L_4473398_SNP [dm3] 3L_4473398_SNP [dm6]	A	C	2.638e^-4	0.734	NON_SYNONYMOUS_CODING CG11349 DOWNSTREAM CG32248
2L	4749372	2L_4749372_SNP [dm3] 2L_4749372_SNP [dm6]	T	C	2.641e^-4	0.734	INTRON CG15630
2L	17534548	2L_17534548_SNP [dm3] 2L_17534548_SNP [dm6]	A	T	2.644e^-4	0.734	INTERGENIC
2R	18086524	2R_18086524_SNP [dm3] 2R_22199019_SNP [dm6]	G	A	2.649e^-4	0.734	INTRON Swim
3R	23030845	3R_23030845_SNP [dm3] 3R_27205123_SNP [dm6]	T	A	2.666e^-4	0.736	INTERGENIC	regulatory region REDfly_CRMs
3R	23299117	3R_23299117_SNP [dm3] 3R_27473395_SNP [dm6]	T	C	2.667e^-4	0.736	INTERGENIC
X	18214183	X_18214183_SNP [dm3] X_18320150_SNP [dm6]	G	C	2.668e^-4	0.736	INTRON CG6023
2R	7053816	2R_7053816_SNP [dm3] 2R_11166311_SNP [dm6]	T	A	2.672e^-4	0.736	INTRON shn & 1 other
2R	18568858	2R_18568858_SNP [dm3] 2R_22681353_SNP [dm6]	C	T	2.681e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	5023309	2R_5023309_SNP [dm3] 2R_9135804_SNP [dm6]	A	G	2.698e^-4	0.739	SYNONYMOUS_CODING alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
3L	5874728	3L_5874728_SNP [dm3] 3L_5881628_SNP [dm6]	T	G	2.704e^-4	0.739	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	23161749	3R_23161749_SNP [dm3] 3R_27336027_SNP [dm6]	G	A	2.709e^-4	0.739	INTERGENIC
3R	22034367	3R_22034367_SNP [dm3] 3R_26208645_SNP [dm6]	A	C	2.712e^-4	0.739	INTRON CR44320
2L	15785254	2L_15785254_SNP [dm3] 2L_15785254_SNP [dm6]	G	A	2.712e^-4	0.739	NON_SYNONYMOUS_CODING CG18109
3R	9125625	3R_9125625_SNP [dm3] 3R_13299903_SNP [dm6]	C	T	2.713e^-4	0.739	SPLICE_SITE_REGION CG8774 INTRON CG8774
X	5482435	X_5482435_SNP [dm3] X_5588402_SNP [dm6]	C	T	2.719e^-4	0.739	INTERGENIC
3R	23861526	3R_23861526_SNP [dm3] 3R_28035804_SNP [dm6]	T	C	2.719e^-4	0.739	INTRON CG34362
2R	13820103	2R_13820103_SNP [dm3] 2R_17932598_SNP [dm6]	G	C	2.725e^-4	0.739	INTERGENIC
2L	18955125	2L_18955125_SNP [dm3] 2L_18955125_SNP [dm6]	A	T	2.727e^-4	0.739	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	5023303	2R_5023303_SNP [dm3] 2R_9135798_SNP [dm6]	G	A	2.730e^-4	0.739	SYNONYMOUS_CODING alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
2R	15408588	2R_15408588_SNP [dm3] 2R_19521083_SNP [dm6]	G	T	2.735e^-4	0.739	UTR_3_PRIME sm
3L	12661280	3L_12661280_SNP [dm3] 3L_12668180_SNP [dm6]	C	A	2.749e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11481881	2R_11481881_SNP [dm3] 2R_15594376_SNP [dm6]	T	C	2.750e^-4	0.741	INTERGENIC
2L	16089287	2L_16089287_DEL [dm3] 2L_16089287_DEL [dm6]	ATTTGAAGTAAATTAATGGC...	G	2.760e^-4	0.742	INTERGENIC
2R	14106341	2R_14106341_SNP [dm3] 2R_18218836_SNP [dm6]	G	C	2.761e^-4	0.742	INTERGENIC
3L	13823737	3L_13823737_SNP [dm3] 3L_13830637_SNP [dm6]	G	A	2.766e^-4	0.742	INTERGENIC
3R	16285360	3R_16285360_SNP [dm3] 3R_20459638_SNP [dm6]	G	C	2.770e^-4	0.742	INTRON Gfrl
3L	4480131	3L_4480131_SNP [dm3] 3L_4480131_SNP [dm6]	T	C	2.780e^-4	0.744	UPSTREAM CG7465 INTERGENIC
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	2.789e^-4	0.745	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	8108735	3R_8108735_SNP [dm3] 3R_12283013_SNP [dm6]	A	G	2.798e^-4	0.746	INTRON svp
3L	4695370	3L_4695370_SNP [dm3] 3L_4695370_SNP [dm6]	G	T	2.806e^-4	0.748	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25186104	3R_25186104_SNP [dm3] 3R_29360382_SNP [dm6]	T	A	2.812e^-4	0.748	INTERGENIC
2R	12793923	2R_12793923_SNP [dm3] 2R_16906418_SNP [dm6]	G	A	2.814e^-4	0.748	INTERGENIC
X	2793362	X_2793362_SNP [dm3] X_2899329_SNP [dm6]	T	C	2.821e^-4	0.748	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21858764	3R_21858764_SNP [dm3] 3R_26033042_SNP [dm6]	C	T	2.830e^-4	0.75	NON_SYNONYMOUS_CODING E_spl_m6-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15459131	2L_15459131_SNP [dm3] 2L_15459131_SNP [dm6]	A	G	2.834e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	2.840e^-4	0.75	INTERGENIC
2R	4661144	2R_4661144_SNP [dm3] 2R_8773639_SNP [dm6]	G	C	2.853e^-4	0.751	INTERGENIC
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	2.858e^-4	0.751	UTR_3_PRIME CG9970 INTRON Shab
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	2.872e^-4	0.751	INTRON Cad87A
2L	15739693	2L_15739693_SNP [dm3] 2L_15739693_SNP [dm6]	A	T	2.878e^-4	0.751	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4080422	3L_4080422_SNP [dm3] 3L_4080422_SNP [dm6]	C	T	2.890e^-4	0.751	INTRON Gad1
2L	2929510	2L_2929510_SNP [dm3] 2L_2929510_SNP [dm6]	C	A	2.893e^-4	0.751	INTRON lilli
3L	4695404	3L_4695404_SNP [dm3] 3L_4695404_SNP [dm6]	T	A	2.900e^-4	0.751	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6448730	3L_6448730_SNP [dm3] 3L_6455630_SNP [dm6]	A	T	2.902e^-4	0.751	INTRON CG42747
3R	2169760	3R_2169760_SNP [dm3] 3R_6344038_SNP [dm6]	A	T	2.919e^-4	0.751	START_GAINED CG17919 UTR_5_PRIME CG17919 DOWNSTREAM CG10298 & 1 other
3R	12132497	3R_12132497_SNP [dm3] 3R_16306775_SNP [dm6]	C	A	2.920e^-4	0.751	NON_SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1247486	3L_1247486_SNP [dm3] 3L_1247486_SNP [dm6]	C	G	2.921e^-4	0.751	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1248854	3L_1248854_SNP [dm3] 3L_1248854_SNP [dm6]	C	T	2.921e^-4	0.751	SYNONYMOUS_CODING Sac1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	10654291	3L_10654291_SNP [dm3] 3L_10661191_SNP [dm6]	G	A	2.921e^-4	0.751	UPSTREAM CG8003 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	3264722	3R_3264722_SNP [dm3] 3R_7439000_SNP [dm6]	T	A	2.926e^-4	0.751	UPSTREAM CG14598 INTERGENIC
2R	6429590	2R_6429590_SNP [dm3] 2R_10542085_SNP [dm6]	A	T	2.941e^-4	0.751	UPSTREAM lola DOWNSTREAM CR45135 INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
3L	10745406	3L_10745406_SNP [dm3] 3L_10752306_SNP [dm6]	T	C	2.944e^-4	0.751	INTERGENIC
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	2.948e^-4	0.751	SYNONYMOUS_CODING CG6282
3R	22962190	3R_22962190_SNP [dm3] 3R_27136468_SNP [dm6]	C	T	2.948e^-4	0.751	INTRON CG6051
3R	26133824	3R_26133824_SNP [dm3] 3R_30308102_SNP [dm6]	A	G	2.958e^-4	0.751	INTRON hdc
3R	16981935	3R_16981935_SNP [dm3] 3R_21156213_SNP [dm6]	A	G	2.958e^-4	0.751	UPSTREAM SNF4Agamma INTRON SNF4Agamma	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15394740	2R_15394740_SNP [dm3] 2R_19507235_SNP [dm6]	C	G	2.959e^-4	0.751	UPSTREAM tRNA:H:56E & 1 other INTERGENIC
2R	13819999	2R_13819999_SNP [dm3] 2R_17932494_SNP [dm6]	A	G	2.962e^-4	0.751	INTERGENIC
3R	6884319	3R_6884319_SNP [dm3] 3R_11058597_SNP [dm6]	T	C	2.962e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13606629	X_13606629_SNP [dm3] X_13712596_SNP [dm6]	A	G	2.974e^-4	0.751	INTRON CG9940 & 1 other
3R	9757508	3R_9757508_SNP [dm3] 3R_13931786_SNP [dm6]	T	A	2.978e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	4930121	2L_4930121_SNP [dm3] 2L_4930121_SNP [dm6]	A	T	2.979e^-4	0.751	INTRON hoe1
3R	2171681	3R_2171681_SNP [dm3] 3R_6345959_SNP [dm6]	G	A	2.982e^-4	0.751	UPSTREAM CG18048 & 1 other DOWNSTREAM CG17919 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18529905	2R_18529905_SNP [dm3] 2R_22642400_SNP [dm6]	C	T	2.986e^-4	0.751	SYNONYMOUS_CODING Ugt58Fa UPSTREAM RpS24	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1263692	3L_1263692_SNP [dm3] 3L_1263692_SNP [dm6]	C	A	2.992e^-4	0.751	INTRON CG9134
2R	8393926	2R_8393926_SNP [dm3] 2R_12506421_SNP [dm6]	C	T	2.993e^-4	0.751	INTRON fdl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	9599423	3R_9599423_SNP [dm3] 3R_13773701_SNP [dm6]	T	C	2.996e^-4	0.751	INTRON CG9297
3R	7761292	3R_7761292_SNP [dm3] 3R_11935570_SNP [dm6]	G	T	3.007e^-4	0.751	INTRON Cad87A
X	3915416	X_3915416_SNP [dm3] X_4021383_SNP [dm6]	C	T	3.009e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11451435	3L_11451435_SNP [dm3] 3L_11458335_SNP [dm6]	C	T	3.009e^-4	0.751	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3R	22217826	3R_22217826_SNP [dm3] 3R_26392104_SNP [dm6]	A	G	3.020e^-4	0.751	INTERGENIC
X	16841751	X_16841751_SNP [dm3] X_16947718_SNP [dm6]	G	T	3.023e^-4	0.751	DOWNSTREAM CG13000 INTRON RhoGAP15B
2L	2138686	2L_2138686_SNP [dm3] 2L_2138686_SNP [dm6]	A	T	3.024e^-4	0.751	INTRON tho2	TF binding site mE1_TFBS_sens
3R	16331597	3R_16331597_SNP [dm3] 3R_20505875_SNP [dm6]	G	A	3.026e^-4	0.751	NON_SYNONYMOUS_CODING Or92a
2R	12240290	2R_12240290_SNP [dm3] 2R_16352785_SNP [dm6]	A	T	3.028e^-4	0.751	INTERGENIC
2R	4192646	2R_4192646_SNP [dm3] 2R_8305141_SNP [dm6]	G	A	3.044e^-4	0.751	DOWNSTREAM CR44447 INTERGENIC
2R	11827568	2R_11827568_SNP [dm3] 2R_15940063_SNP [dm6]	C	A	3.048e^-4	0.751	UTR_5_PRIME Mlf UPSTREAM Mlf DOWNSTREAM CG8299	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8862781	X_8862781_SNP [dm3] X_8968748_SNP [dm6]	C	A	3.052e^-4	0.751	INTRON rdgA
2R	10673292	2R_10673292_SNP [dm3] 2R_14785787_SNP [dm6]	C	T	3.054e^-4	0.751	INTRON kn
3L	2365433	3L_2365433_SNP [dm3] 3L_2365433_SNP [dm6]	T	C	3.056e^-4	0.751	INTERGENIC
3L	1255360	3L_1255360_SNP [dm3] 3L_1255360_SNP [dm6]	G	A	3.057e^-4	0.751	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3L	1720402	3L_1720402_SNP [dm3] 3L_1720402_SNP [dm6]	A	G	3.061e^-4	0.751	DOWNSTREAM CG18171 INTRON drpr
3R	5494460	3R_5494460_SNP [dm3] 3R_9668738_SNP [dm6]	T	G	3.068e^-4	0.751	INTRON CG9492
2R	8207077	2R_8207077_SNP [dm3] 2R_12319572_SNP [dm6]	G	A	3.069e^-4	0.751	INTERGENIC
3L	7425443	3L_7425443_SNP [dm3] 3L_7432343_SNP [dm6]	A	T	3.071e^-4	0.751	INTRON CG42458
3R	2748664	3R_2748664_SNP [dm3] 3R_6922942_SNP [dm6]	C	T	3.074e^-4	0.751	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	5853130	3L_5853130_SNP [dm3] 3L_5860030_SNP [dm6]	A	G	3.077e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	8735914	2R_8735914_SNP [dm3] 2R_12848409_SNP [dm6]	C	A	3.081e^-4	0.751	SYNONYMOUS_CODING CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2R	9538797	2R_9538797_SNP [dm3] 2R_13651292_SNP [dm6]	C	G	3.089e^-4	0.751	INTRON fas
3L	5567522	3L_5567522_SNP [dm3] 3L_5574422_SNP [dm6]	A	G	3.089e^-4	0.751	INTRON Msr-110
3L	2365431	3L_2365431_SNP [dm3] 3L_2365431_SNP [dm6]	T	A	3.093e^-4	0.751	INTERGENIC
2R	13493842	2R_13493842_SNP [dm3] 2R_17606337_SNP [dm6]	G	A	3.102e^-4	0.751	SYNONYMOUS_CODING CG10936
3L	1070548	3L_1070548_SNP [dm3] 3L_1070548_SNP [dm6]	C	T	3.107e^-4	0.751	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3L	1248899	3L_1248899_SNP [dm3] 3L_1248899_SNP [dm6]	G	A	3.108e^-4	0.751	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12521901	2R_12521901_SNP [dm3] 2R_16634396_SNP [dm6]	C	T	3.111e^-4	0.751	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo
X	22044672	X_22044672_SNP [dm3] X_22642836_SNP [dm6]	C	A	3.115e^-4	0.751	INTERGENIC
2R	16353348	2R_16353348_SNP [dm3] 2R_20465843_SNP [dm6]	G	A	3.115e^-4	0.751	INTRON CG12484
2R	12854179	2R_12854179_SNP [dm3] 2R_16966674_SNP [dm6]	A	T	3.116e^-4	0.751	INTERGENIC
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	3.124e^-4	0.751	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17812007	2R_17812007_DEL [dm3] 2R_21924502_DEL [dm6]	CG	C	3.127e^-4	0.751	INTRON Fili
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	3.129e^-4	0.751	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	3.129e^-4	0.751	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	3.129e^-4	0.751	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	3.129e^-4	0.751	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	3.129e^-4	0.751	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	3.129e^-4	0.751	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	3.129e^-4	0.751	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	3.129e^-4	0.751	SYNONYMOUS_CODING emb
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	3.142e^-4	0.752	INTERGENIC
2L	2936755	2L_2936755_SNP [dm3] 2L_2936755_SNP [dm6]	A	G	3.143e^-4	0.752	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	2771405	3R_2771405_SNP [dm3] 3R_6945683_SNP [dm6]	G	T	3.163e^-4	0.753	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12268989	2L_12268989_MNP [dm3] 2L_12268989_MNP [dm6]	ACAACA	TTGTGT	3.170e^-4	0.753	INTRON aret
3R	8108330	3R_8108330_SNP [dm3] 3R_12282608_SNP [dm6]	C	T	3.173e^-4	0.753	INTRON svp
2L	18381170	2L_18381170_SNP [dm3] 2L_18381170_SNP [dm6]	T	C	3.176e^-4	0.753	INTRON Fas3
2R	6429211	2R_6429211_SNP [dm3] 2R_10541706_SNP [dm6]	C	T	3.179e^-4	0.753	UPSTREAM lola INTRON lola EXON CR45135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	465721	3L_465721_SNP [dm3] 3L_465721_SNP [dm6]	A	G	3.181e^-4	0.753	INTRON klar
2R	12853844	2R_12853844_SNP [dm3] 2R_16966339_SNP [dm6]	T	C	3.183e^-4	0.753	INTERGENIC
X	8968360	X_8968360_SNP [dm3] X_9074327_SNP [dm6]	T	G	3.183e^-4	0.753	INTRON CG44325
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	3.184e^-4	0.753	INTERGENIC
3R	20280889	3R_20280889_SNP [dm3] 3R_24455167_SNP [dm6]	C	A	3.188e^-4	0.753	INTRON nAChRalpha1
3R	16053018	3R_16053018_SNP [dm3] 3R_20227296_SNP [dm6]	C	A	3.194e^-4	0.754	INTRON Nlg4
2R	10116847	2R_10116847_SNP [dm3] 2R_14229342_SNP [dm6]	G	A	3.199e^-4	0.754	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9898607	3L_9898607_SNP [dm3] 3L_9905507_SNP [dm6]	A	G	3.203e^-4	0.754	INTERGENIC
2L	6887659	2L_6887659_SNP [dm3] 2L_6887659_SNP [dm6]	T	C	3.207e^-4	0.754	INTRON Nlg2
3L	1239798	3L_1239798_SNP [dm3] 3L_1239798_SNP [dm6]	C	T	3.210e^-4	0.754	INTRON CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19284220	2R_19284220_SNP [dm3] 2R_23396697_SNP [dm6]	C	T	3.215e^-4	0.754	UPSTREAM CG3530 DOWNSTREAM CG3520 INTERGENIC
3L	15391293	3L_15391293_DEL [dm3] 3L_15398193_DEL [dm6]	GG	G	3.236e^-4	0.756	INTERGENIC
2L	14589239	2L_14589239_INS [dm3] 2L_14589239_INS [dm6]	A	TC	3.246e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	14589243	2L_14589243_INS [dm3] 2L_14589243_INS [dm6]	T	TTCATCCTGTGCT...	3.246e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	21853020	3R_21853020_SNP [dm3] 3R_26027298_SNP [dm6]	C	T	3.247e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5328176	X_5328176_SNP [dm3] X_5434143_SNP [dm6]	A	C	3.264e^-4	0.756	INTRON CR44471
3R	21872420	3R_21872420_SNP [dm3] 3R_26046698_SNP [dm6]	A	G	3.275e^-4	0.756	INTRON gro
X	22036543	X_22036543_SNP [dm3] X_22634707_SNP [dm6]	C	A	3.278e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	4823142	X_4823142_SNP [dm3] X_4929109_SNP [dm6]	G	T	3.284e^-4	0.756	NON_SYNONYMOUS_CODING CG44774	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	3.286e^-4	0.756	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2R	13547478	2R_13547478_SNP [dm3] 2R_17659973_SNP [dm6]	A	G	3.290e^-4	0.756	INTRON CCHa1-R
3R	6505177	3R_6505177_SNP [dm3] 3R_10679455_SNP [dm6]	A	T	3.291e^-4	0.756	INTRON CG14688
2R	12534247	2R_12534247_SNP [dm3] 2R_16646742_SNP [dm6]	C	T	3.292e^-4	0.756	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18691867	3L_18691867_SNP [dm3] 3L_18698767_SNP [dm6]	A	G	3.292e^-4	0.756	UPSTREAM Dic4 INTERGENIC
2R	1336414	2R_1336414_SNP [dm3] 2R_5448909_SNP [dm6]	C	T	3.292e^-4	0.756	DOWNSTREAM laccase2 INTRON laccase2	transposable element FlyBase
3L	5622503	3L_5622503_SNP [dm3] 3L_5629403_SNP [dm6]	A	T	3.296e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	3.298e^-4	0.756	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
3L	3616835	3L_3616835_SNP [dm3] 3L_3616835_SNP [dm6]	C	T	3.300e^-4	0.756	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	18334370	3L_18334370_SNP [dm3] 3L_18341270_SNP [dm6]	C	A	3.300e^-4	0.756	INTERGENIC
3L	4110035	3L_4110035_SNP [dm3] 3L_4110035_SNP [dm6]	G	A	3.301e^-4	0.756	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20937214	3R_20937214_SNP [dm3] 3R_25111492_SNP [dm6]	T	G	3.307e^-4	0.756	SYNONYMOUS_CODING CG13650	TF binding site mE1_TFBS_cad
3R	8224594	3R_8224594_SNP [dm3] 3R_12398872_SNP [dm6]	G	A	3.320e^-4	0.756	DOWNSTREAM lig3 INTRON CG34402 EXON Cyp9f3Psi
2L	16112557	2L_16112557_SNP [dm3] 2L_16112557_SNP [dm6]	T	A	3.325e^-4	0.756	INTERGENIC
X	22036458	X_22036458_SNP [dm3] X_22634622_SNP [dm6]	A	T	3.326e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13756799	3R_13756799_SNP [dm3] 3R_17931077_SNP [dm6]	G	C	3.335e^-4	0.756	UPSTREAM cpo INTRON cpo
3R	21872044	3R_21872044_SNP [dm3] 3R_26046322_SNP [dm6]	C	A	3.348e^-4	0.756	INTRON gro
X	9591725	X_9591725_SNP [dm3] X_9697692_SNP [dm6]	G	T	3.349e^-4	0.756	DOWNSTREAM btd INTERGENIC
X	14754932	X_14754932_SNP [dm3] X_14860899_SNP [dm6]	A	C	3.357e^-4	0.756	INTRON Flo2
X	13606796	X_13606796_SNP [dm3] X_13712763_SNP [dm6]	T	C	3.368e^-4	0.756	SYNONYMOUS_CODING NnaD INTRON CG9940
2R	1104395	2R_1104395_SNP [dm3] 2R_5216890_SNP [dm6]	G	C	3.370e^-4	0.756	INTRON Nipped-A
3L	9898580	3L_9898580_DEL [dm3] 3L_9905480_DEL [dm6]	TATTTGTTCAC...	T	3.377e^-4	0.756	INTERGENIC
2R	11510185	2R_11510185_SNP [dm3] 2R_15622680_SNP [dm6]	T	C	3.383e^-4	0.756	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13761560	3R_13761560_SNP [dm3] 3R_17935838_SNP [dm6]	T	G	3.383e^-4	0.756	INTRON cpo
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	3.388e^-4	0.756	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
2L	14589266	2L_14589266_SNP [dm3] 2L_14589266_SNP [dm6]	C	T	3.390e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	5640267	3R_5640267_SNP [dm3] 3R_9814545_SNP [dm6]	G	C	3.392e^-4	0.756	NON_SYNONYMOUS_CODING eloF UPSTREAM CR44035 DOWNSTREAM CG8534	TF binding site mE1_TFBS_sens
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	3.395e^-4	0.756	INTERGENIC
2R	20306902	2R_20306902_SNP [dm3] 2R_24419379_SNP [dm6]	T	G	3.401e^-4	0.756	INTRON prom	TF binding site mE1_TFBS_chinmo
3L	4479997	3L_4479997_SNP [dm3] 3L_4479997_SNP [dm6]	C	T	3.404e^-4	0.756	UPSTREAM CG7465 INTERGENIC
2L	11348978	2L_11348978_SNP [dm3] 2L_11348978_SNP [dm6]	G	T	3.405e^-4	0.756	INTERGENIC	regulatory region REDfly_CRMs
2R	17942007	2R_17942007_SNP [dm3] 2R_22054502_SNP [dm6]	G	T	3.408e^-4	0.756	INTERGENIC
3R	6498604	3R_6498604_SNP [dm3] 3R_10672882_SNP [dm6]	A	C	3.415e^-4	0.756	INTERGENIC
3L	9898595	3L_9898595_DEL [dm3] 3L_9905495_DEL [dm6]	CAGCTGCAGC	A	3.419e^-4	0.756	INTERGENIC
2R	10101096	2R_10101096_DEL [dm3] 2R_14213591_DEL [dm6]	ATTTT	A	3.428e^-4	0.756	INTERGENIC
2R	13056326	2R_13056326_SNP [dm3] 2R_17168821_SNP [dm6]	C	A	3.430e^-4	0.756	INTERGENIC
2R	15171632	2R_15171632_SNP [dm3] 2R_19284127_SNP [dm6]	C	A	3.434e^-4	0.756	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	13369853	3L_13369853_SNP [dm3] 3L_13376753_SNP [dm6]	A	C	3.435e^-4	0.756	INTERGENIC
2L	2112073	2L_2112073_SNP [dm3] 2L_2112073_SNP [dm6]	T	G	3.435e^-4	0.756	INTERGENIC
3L	10685830	3L_10685830_SNP [dm3] 3L_10692730_SNP [dm6]	G	T	3.440e^-4	0.756	UTR_3_PRIME CG33493 DOWNSTREAM CG6463 & 1 other
2L	11185286	2L_11185286_SNP [dm3] 2L_11185286_SNP [dm6]	A	G	3.445e^-4	0.756	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd
3R	21851605	3R_21851605_SNP [dm3] 3R_26025883_SNP [dm6]	T	G	3.451e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14232440	2L_14232440_SNP [dm3] 2L_14232440_SNP [dm6]	T	C	3.455e^-4	0.756	INTRON Dyrk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1325558	2L_1325558_SNP [dm3] 2L_1325558_SNP [dm6]	T	A	3.456e^-4	0.756	INTERGENIC
3L	5962545	3L_5962545_SNP [dm3] 3L_5969445_SNP [dm6]	G	A	3.457e^-4	0.756	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5955549	3L_5955549_SNP [dm3] 3L_5962449_SNP [dm6]	T	A	3.460e^-4	0.756	INTERGENIC
2R	9381051	2R_9381051_SNP [dm3] 2R_13493546_SNP [dm6]	G	C	3.460e^-4	0.756	INTRON bbc
3R	3236632	3R_3236632_SNP [dm3] 3R_7410910_SNP [dm6]	G	A	3.463e^-4	0.756	INTERGENIC
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	3.466e^-4	0.756	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16841671	X_16841671_SNP [dm3] X_16947638_SNP [dm6]	C	A	3.471e^-4	0.756	DOWNSTREAM CG13000 INTRON RhoGAP15B
2R	19334746	2R_19334746_SNP [dm3] 2R_23447223_SNP [dm6]	C	A	3.473e^-4	0.756	INTRON CG43795
3R	25114879	3R_25114879_SNP [dm3] 3R_29289157_SNP [dm6]	T	C	3.480e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10892081	3R_10892081_SNP [dm3] 3R_15066359_SNP [dm6]	A	C	3.481e^-4	0.756	INTRON dpr9
2R	13056365	2R_13056365_SNP [dm3] 2R_17168860_SNP [dm6]	C	T	3.482e^-4	0.756	INTERGENIC
X	12507160	X_12507160_SNP [dm3] X_12613127_SNP [dm6]	A	G	3.483e^-4	0.756	SYNONYMOUS_CODING CG2543 DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11511812	2R_11511812_MNP [dm3] 2R_15624307_MNP [dm6]	ATCTTTTC	GAAAAGAT	3.484e^-4	0.756	INTRON CG42524	TF binding site mE1_TFBS_chinmo
3L	1720225	3L_1720225_SNP [dm3] 3L_1720225_SNP [dm6]	G	T	3.502e^-4	0.756	DOWNSTREAM CG18171 INTRON drpr	TF binding site mE1_TFBS_chinmo
3R	5494442	3R_5494442_DEL [dm3] 3R_9668720_DEL [dm6]	ATTGTACTTAGTGAT...	A	3.504e^-4	0.756	INTRON CG9492
2L	9318576	2L_9318576_SNP [dm3] 2L_9318576_SNP [dm6]	A	G	3.507e^-4	0.756	INTERGENIC
2L	2918805	2L_2918805_SNP [dm3] 2L_2918805_SNP [dm6]	C	G	3.508e^-4	0.756	INTRON lilli
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	3.511e^-4	0.756	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	3.514e^-4	0.756	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14699820	2L_14699820_SNP [dm3] 2L_14699820_SNP [dm6]	G	A	3.525e^-4	0.756	INTERGENIC
3L	11293051	3L_11293051_INS [dm3] 3L_11299951_INS [dm6]	T	TG	3.528e^-4	0.756	INTERGENIC
2R	18358012	2R_18358012_SNP [dm3] 2R_22470507_SNP [dm6]	T	A	3.531e^-4	0.756	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2L	7442889	2L_7442889_SNP [dm3] 2L_7442889_SNP [dm6]	C	T	3.539e^-4	0.756	UPSTREAM CG5973 INTRON CG5973
2R	9754031	2R_9754031_SNP [dm3] 2R_13866526_SNP [dm6]	A	G	3.541e^-4	0.756	SYNONYMOUS_CODING shot
2R	19227185	2R_19227185_SNP [dm3] 2R_23339662_SNP [dm6]	A	G	3.542e^-4	0.756	INTERGENIC
3R	8560960	3R_8560960_SNP [dm3] 3R_12735238_SNP [dm6]	A	T	3.542e^-4	0.756	INTERGENIC
2R	12854447	2R_12854447_SNP [dm3] 2R_16966942_SNP [dm6]	G	T	3.548e^-4	0.756	INTERGENIC
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	3.551e^-4	0.756	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	3.553e^-4	0.756	INTRON A2bp1
2L	9971245	2L_9971245_SNP [dm3] 2L_9971245_SNP [dm6]	C	G	3.563e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	11788054	2L_11788054_SNP [dm3] 2L_11788054_SNP [dm6]	T	A	3.572e^-4	0.756	UPSTREAM CG14931 INTERGENIC
3L	12198799	3L_12198799_SNP [dm3] 3L_12205699_SNP [dm6]	G	T	3.576e^-4	0.756	NON_SYNONYMOUS_CODING CG5626 DOWNSTREAM app
3L	15377875	3L_15377875_SNP [dm3] 3L_15384775_SNP [dm6]	T	G	3.587e^-4	0.756	INTERGENIC
X	5121690	X_5121690_INS [dm3] X_5227657_INS [dm6]	C	CC	3.590e^-4	0.756	INTRON CG15465 & 1 other
2R	13056338	2R_13056338_SNP [dm3] 2R_17168833_SNP [dm6]	A	T	3.600e^-4	0.756	INTERGENIC
2L	15051967	2L_15051967_SNP [dm3] 2L_15051967_SNP [dm6]	G	A	3.602e^-4	0.756	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs
3L	8957175	3L_8957175_SNP [dm3] 3L_8964075_SNP [dm6]	C	A	3.605e^-4	0.756	NON_SYNONYMOUS_CODING CG5660 DOWNSTREAM CG5653	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13631604	3L_13631604_SNP [dm3] 3L_13638504_SNP [dm6]	T	G	3.610e^-4	0.756	INTRON bru-3
3R	14308484	3R_14308484_SNP [dm3] 3R_18482762_SNP [dm6]	T	C	3.610e^-4	0.756	INTRON fru
2L	1076108	2L_1076108_SNP [dm3] 2L_1076108_SNP [dm6]	G	A	3.614e^-4	0.756	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8733859	2R_8733859_SNP [dm3] 2R_12846354_SNP [dm6]	A	G	3.624e^-4	0.756	SYNONYMOUS_CODING CG17575 DOWNSTREAM antr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17105073	2R_17105073_DEL [dm3] 2R_21217568_DEL [dm6]	AAATGAAAA	A	3.635e^-4	0.756	DOWNSTREAM ASPP INTRON CG15661
2R	18283529	2R_18283529_SNP [dm3] 2R_22396024_SNP [dm6]	A	T	3.639e^-4	0.756	INTRON babos	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2781599	3R_2781599_SNP [dm3] 3R_6955877_SNP [dm6]	T	G	3.642e^-4	0.756	INTRON Antp
2L	17142544	2L_17142544_SNP [dm3] 2L_17142544_SNP [dm6]	C	A	3.642e^-4	0.756	INTRON beat-IIIa & 1 other
3R	8511590	3R_8511590_SNP [dm3] 3R_12685868_SNP [dm6]	T	C	3.644e^-4	0.756	INTRON kar	TF binding site mE1_TFBS_cad
3R	9413152	3R_9413152_SNP [dm3] 3R_13587430_SNP [dm6]	A	G	3.653e^-4	0.756	UPSTREAM CG14370 INTERGENIC
2L	10522790	2L_10522790_SNP [dm3] 2L_10522790_SNP [dm6]	C	G	3.654e^-4	0.756	INTERGENIC
2L	11311633	2L_11311633_SNP [dm3] 2L_11311633_SNP [dm6]	A	G	3.667e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9106189	X_9106189_SNP [dm3] X_9212156_SNP [dm6]	T	C	3.671e^-4	0.756	INTERGENIC
3L	10893212	3L_10893212_SNP [dm3] 3L_10900112_SNP [dm6]	G	A	3.674e^-4	0.756	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
3L	2404297	3L_2404297_SNP [dm3] 3L_2404297_SNP [dm6]	G	A	3.674e^-4	0.756	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1111232	2L_1111232_SNP [dm3] 2L_1111232_SNP [dm6]	G	A	3.676e^-4	0.756	INTRON CG14339
2L	1111238	2L_1111238_INS [dm3] 2L_1111238_INS [dm6]	T	TATA	3.676e^-4	0.756	INTRON CG14339
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	3.678e^-4	0.756	UPSTREAM CG3306 & 1 other INTERGENIC
2R	16281341	2R_16281341_SNP [dm3] 2R_20393836_SNP [dm6]	A	T	3.680e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12331119	X_12331119_SNP [dm3] X_12437086_SNP [dm6]	C	G	3.683e^-4	0.756	INTRON Pkcdelta
2R	5019535	2R_5019535_SNP [dm3] 2R_9132030_SNP [dm6]	T	C	3.686e^-4	0.756	UTR_5_PRIME CG18659 UPSTREAM Hydr1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18836221	3L_18836221_DEL [dm3] 3L_18843121_DEL [dm6]	CATGC	C	3.686e^-4	0.756	DOWNSTREAM CR32027 INTRON Indy
3R	9383446	3R_9383446_SNP [dm3] 3R_13557724_SNP [dm6]	T	A	3.688e^-4	0.756	INTERGENIC
3L	5853139	3L_5853139_SNP [dm3] 3L_5860039_SNP [dm6]	C	A	3.693e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	3013281	3L_3013281_SNP [dm3] 3L_3013281_SNP [dm6]	A	G	3.693e^-4	0.756	INTERGENIC
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	3.713e^-4	0.756	INTRON CR45668	TF binding site mE1_TFBS_zfh1
X	21527642	X_21527642_SNP [dm3] X_21656615_SNP [dm6]	T	C	3.713e^-4	0.756	INTERGENIC	transposable element FlyBase
3L	18382462	3L_18382462_SNP [dm3] 3L_18389362_SNP [dm6]	A	T	3.714e^-4	0.756	INTERGENIC
2L	7775443	2L_7775443_SNP [dm3] 2L_7775443_SNP [dm6]	A	C	3.729e^-4	0.756	DOWNSTREAM CG7179 & 1 other INTERGENIC
3R	13070888	3R_13070888_SNP [dm3] 3R_17245166_SNP [dm6]	T	C	3.734e^-4	0.756	INTRON beat-IIb
2L	794788	2L_794788_SNP [dm3] 2L_794788_SNP [dm6]	G	C	3.736e^-4	0.756	INTERGENIC
2R	19284312	2R_19284312_SNP [dm3] 2R_23396789_SNP [dm6]	G	A	3.738e^-4	0.756	UTR_3_PRIME CG3520 UPSTREAM CG3530	TF binding site mE1_TFBS_sens
X	9039775	X_9039775_SNP [dm3] X_9145742_SNP [dm6]	G	C	3.743e^-4	0.756	INTRON CG7065
3L	2487809	3L_2487809_SNP [dm3] 3L_2487809_SNP [dm6]	A	T	3.752e^-4	0.756	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9971242	2L_9971242_SNP [dm3] 2L_9971242_SNP [dm6]	G	A	3.754e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	27075498	3R_27075498_SNP [dm3] 3R_31249776_SNP [dm6]	A	G	3.760e^-4	0.756	INTRON qless
2R	13820094	2R_13820094_SNP [dm3] 2R_17932589_SNP [dm6]	C	A	3.762e^-4	0.756	INTERGENIC
X	5481740	X_5481740_SNP [dm3] X_5587707_SNP [dm6]	T	A	3.763e^-4	0.756	INTERGENIC
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	3.764e^-4	0.756	INTERGENIC
X	6284028	X_6284028_INS [dm3] X_6389995_INS [dm6]	T	TCACTGAGT	3.770e^-4	0.756	INTERGENIC
3L	10182482	3L_10182482_SNP [dm3] 3L_10189382_SNP [dm6]	G	A	3.775e^-4	0.756	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	25081866	3R_25081866_SNP [dm3] 3R_29256144_SNP [dm6]	G	A	3.780e^-4	0.756	UPSTREAM stg & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	18210938	X_18210938_INS [dm3] X_18316905_INS [dm6]	A	AAGAGTCAGACTGAA...	3.782e^-4	0.756	INTRON CG6023	TF binding site mE1_TFBS_HSA
3R	13066324	3R_13066324_SNP [dm3] 3R_17240602_SNP [dm6]	T	G	3.786e^-4	0.756	INTRON beat-IIb
2R	6297497	2R_6297497_SNP [dm3] 2R_10409992_SNP [dm6]	A	T	3.787e^-4	0.756	NON_SYNONYMOUS_CODING CG33476 UPSTREAM CG33477 DOWNSTREAM CG33475 INTRON CG42732
3L	17019791	3L_17019791_SNP [dm3] 3L_17026691_SNP [dm6]	T	C	3.794e^-4	0.756	SYNONYMOUS_CODING Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
X	8631644	X_8631644_SNP [dm3] X_8737611_SNP [dm6]	G	C	3.798e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	13606599	X_13606599_SNP [dm3] X_13712566_SNP [dm6]	G	A	3.800e^-4	0.756	INTRON CG9940 & 1 other
3L	8554215	3L_8554215_DEL [dm3] 3L_8561115_DEL [dm6]	CC	C	3.804e^-4	0.756	INTRON rhea
3R	12388122	3R_12388122_DEL [dm3] 3R_16562400_DEL [dm6]	AA	A	3.805e^-4	0.756	INTRON CG42342
2L	14102655	2L_14102655_SNP [dm3] 2L_14102655_SNP [dm6]	A	G	3.805e^-4	0.756	INTERGENIC
2L	4971948	2L_4971948_SNP [dm3] 2L_4971948_SNP [dm6]	T	A	3.816e^-4	0.756	NON_SYNONYMOUS_CODING CG14043 UPSTREAM l_2_05714 INTRON l_2_05714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	10112193	2R_10112193_SNP [dm3] 2R_14224688_SNP [dm6]	G	T	3.823e^-4	0.756	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4170950	2L_4170950_SNP [dm3] 2L_4170950_SNP [dm6]	G	A	3.825e^-4	0.756	INTERGENIC
3R	5494461	3R_5494461_SNP [dm3] 3R_9668739_SNP [dm6]	C	T	3.832e^-4	0.756	INTRON CG9492
2L	14211007	2L_14211007_SNP [dm3] 2L_14211007_SNP [dm6]	T	C	3.832e^-4	0.756	INTRON Dyrk2
2L	2016683	2L_2016683_SNP [dm3] 2L_2016683_SNP [dm6]	T	A	3.836e^-4	0.756	UPSTREAM CG4238 INTRON CG4238
2L	2016686	2L_2016686_SNP [dm3] 2L_2016686_SNP [dm6]	A	C	3.836e^-4	0.756	UPSTREAM CG4238 INTRON CG4238
3L	7424976	3L_7424976_SNP [dm3] 3L_7431876_SNP [dm6]	C	G	3.839e^-4	0.756	INTRON CG42458
3R	21851816	3R_21851816_SNP [dm3] 3R_26026094_SNP [dm6]	G	T	3.839e^-4	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6568637	3L_6568637_SNP [dm3] 3L_6575537_SNP [dm6]	G	A	3.840e^-4	0.756	INTRON CG18769 & 1 other
3R	15125377	3R_15125377_SNP [dm3] 3R_19299655_SNP [dm6]	G	A	3.842e^-4	0.756	INTERGENIC	TF binding site mE1_TFBS_sens
2R	13820095	2R_13820095_INS [dm3] 2R_17932590_INS [dm6]	A	AATA	3.846e^-4	0.756	INTERGENIC
3L	5874739	3L_5874739_SNP [dm3] 3L_5881639_SNP [dm6]	T	G	3.848e^-4	0.756	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12491439	2L_12491439_SNP [dm3] 2L_12491439_SNP [dm6]	G	T	3.853e^-4	0.756	INTRON bun
3L	8739671	3L_8739671_INS [dm3] 3L_8746571_INS [dm6]	A	ATGTA	3.854e^-4	0.756	INTERGENIC	regulatory region REDfly_CRMs
2R	5023306	2R_5023306_SNP [dm3] 2R_9135801_SNP [dm6]	C	T	3.855e^-4	0.756	SYNONYMOUS_CODING alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
3L	14668108	3L_14668108_SNP [dm3] 3L_14675008_SNP [dm6]	G	C	3.859e^-4	0.756	SYNONYMOUS_CODING CG4914 UPSTREAM tRNA:M3:70Fa DOWNSTREAM tRNA:M3:70Fb INTRON ome	TF binding site mE1_TFBS_sens
3R	13797518	3R_13797518_SNP [dm3] 3R_17971796_SNP [dm6]	G	C	3.873e^-4	0.756	INTRON cpo
X	22030958	X_22030958_SNP [dm3] X_22629122_SNP [dm6]	G	C	3.873e^-4	0.756	INTRON Cda4
3R	20963541	3R_20963541_SNP [dm3] 3R_25137819_SNP [dm6]	G	T	3.873e^-4	0.756	UPSTREAM danr INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18575384	2R_18575384_SNP [dm3] 2R_22687879_SNP [dm6]	G	C	3.873e^-4	0.756	SYNONYMOUS_CODING ppa	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16810998	X_16810998_SNP [dm3] X_16916965_SNP [dm6]	G	A	3.877e^-4	0.756	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	7475033	3L_7475033_INS [dm3] 3L_7481933_INS [dm6]	G	GG	3.881e^-4	0.756	INTERGENIC
3R	7594764	3R_7594764_SNP [dm3] 3R_11769042_SNP [dm6]	T	G	3.885e^-4	0.756	INTRON l_3_neo38
3L	3190538	3L_3190538_SNP [dm3] 3L_3190538_SNP [dm6]	C	T	3.894e^-4	0.756	UTR_3_PRIME CG14958 UPSTREAM CG42525 DOWNSTREAM CG14965
3L	19967494	3L_19967494_SNP [dm3] 3L_19974394_SNP [dm6]	T	C	3.894e^-4	0.756	NON_SYNONYMOUS_CODING Ac76E
3L	5874867	3L_5874867_SNP [dm3] 3L_5881767_SNP [dm6]	T	C	3.897e^-4	0.756	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9685724	2R_9685724_SNP [dm3] 2R_13798219_SNP [dm6]	C	T	3.900e^-4	0.756	INTRON Cpr50Cb
2R	16081118	2R_16081118_DEL [dm3] 2R_20193613_DEL [dm6]	AA	A	3.922e^-4	0.759	INTERGENIC
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	3.923e^-4	0.759	INTRON Cad87A
3L	12291248	3L_12291248_SNP [dm3] 3L_12298148_SNP [dm6]	C	A	3.929e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	3.942e^-4	0.761	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5622031	2L_5622031_SNP [dm3] 2L_5622031_SNP [dm6]	C	T	3.944e^-4	0.761	NON_SYNONYMOUS_CODING Cyp6a16
2L	5924518	2L_5924518_SNP [dm3] 2L_5924518_SNP [dm6]	A	T	3.952e^-4	0.761	UPSTREAM CG9016 DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19227184	2R_19227184_SNP [dm3] 2R_23339661_SNP [dm6]	C	A	3.955e^-4	0.761	INTERGENIC
2L	12269003	2L_12269003_SNP [dm3] 2L_12269003_SNP [dm6]	T	A	3.971e^-4	0.761	INTRON aret
2R	5023665	2R_5023665_SNP [dm3] 2R_9136160_SNP [dm6]	C	T	3.995e^-4	0.761	DOWNSTREAM Hydr1 INTRON alc	TF binding site mE1_TFBS_cad
2L	20042586	2L_20042586_SNP [dm3] 2L_20042586_SNP [dm6]	A	T	4.003e^-4	0.761	INTRON sNPF
3R	23442945	3R_23442945_SNP [dm3] 3R_27617223_SNP [dm6]	C	T	4.005e^-4	0.761	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2R	16353380	2R_16353380_SNP [dm3] 2R_20465875_SNP [dm6]	C	A	4.007e^-4	0.761	INTRON CG12484
3R	24485299	3R_24485299_SNP [dm3] 3R_28659577_SNP [dm6]	T	C	4.012e^-4	0.761	INTERGENIC
X	13182667	X_13182667_SNP [dm3] X_13288634_SNP [dm6]	T	C	4.014e^-4	0.761	DOWNSTREAM CG15743 INTRON CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	4.016e^-4	0.761	UPSTREAM CG44403 INTRON CG10936
2L	16126827	2L_16126827_SNP [dm3] 2L_16126827_SNP [dm6]	A	G	4.023e^-4	0.761	INTERGENIC
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	4.033e^-4	0.761	INTERGENIC
3L	3446287	3L_3446287_SNP [dm3] 3L_3446287_SNP [dm6]	T	A	4.034e^-4	0.761	INTRON eIF5B
3R	12576440	3R_12576440_SNP [dm3] 3R_16750718_SNP [dm6]	A	T	4.038e^-4	0.761	DOWNSTREAM CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	13823742	3L_13823742_INS [dm3] 3L_13830642_INS [dm6]	A	AAGGG	4.039e^-4	0.761	INTERGENIC
2L	17142322	2L_17142322_DEL [dm3] 2L_17142322_DEL [dm6]	GTTCTGC	G	4.041e^-4	0.761	INTRON beat-IIIa & 1 other
X	16160510	X_16160510_SNP [dm3] X_16266477_SNP [dm6]	T	G	4.044e^-4	0.761	SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
2R	4222310	2R_4222310_INS [dm3] 2R_8334805_INS [dm6]	C	CG	4.045e^-4	0.761	INTRON pdm3
3L	9008387	3L_9008387_SNP [dm3] 3L_9015287_SNP [dm6]	C	T	4.046e^-4	0.761	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11132297	X_11132297_SNP [dm3] X_11238264_SNP [dm6]	C	G	4.048e^-4	0.761	INTRON CG44422
3L	9514910	3L_9514910_SNP [dm3] 3L_9521810_SNP [dm6]	G	A	4.051e^-4	0.761	INTRON CG33700
2R	10108184	2R_10108184_SNP [dm3] 2R_14220679_SNP [dm6]	T	C	4.051e^-4	0.761	UTR_5_PRIME CG8468	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	12701856	X_12701856_SNP [dm3] X_12807823_SNP [dm6]	T	G	4.064e^-4	0.761	INTRON Pde9
3R	21839561	3R_21839561_SNP [dm3] 3R_26013839_SNP [dm6]	G	A	4.067e^-4	0.761	UPSTREAM Kaz-m1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	5038186	2R_5038186_SNP [dm3] 2R_9150681_SNP [dm6]	T	C	4.067e^-4	0.761	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	4.072e^-4	0.761	INTRON ush	regulatory region REDfly_CRMs
2L	15785411	2L_15785411_SNP [dm3] 2L_15785411_SNP [dm6]	T	C	4.073e^-4	0.761	NON_SYNONYMOUS_CODING CG18109
2R	15002534	2R_15002534_SNP [dm3] 2R_19115029_SNP [dm6]	C	T	4.085e^-4	0.761	INTRON 5-HT1A

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.715e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2030 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	13246554	X_13246554_SNP [dm3] X_13352521_SNP [dm6]	C	T	4.894e^-6	0.851	INTERGENIC
3L	8682421	3L_8682421_SNP [dm3] 3L_8689321_SNP [dm6]	T	A	5.647e^-6	0.851	INTERGENIC
2R	14966044	2R_14966044_SNP [dm3] 2R_19078539_SNP [dm6]	G	C	6.487e^-6	0.851	INTRON 5-HT1A
2R	14966060	2R_14966060_SNP [dm3] 2R_19078555_SNP [dm6]	G	A	6.953e^-6	0.851	INTRON 5-HT1A
2L	2392281	2L_2392281_SNP [dm3] 2L_2392281_SNP [dm6]	T	A	7.102e^-6	0.851	INTRON VGlut
3L	10299870	3L_10299870_SNP [dm3] 3L_10306770_SNP [dm6]	C	T	7.759e^-6	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13152869	2R_13152869_SNP [dm3] 2R_17265364_SNP [dm6]	T	C	8.252e^-6	0.851	UPSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21181938	X_21181938_SNP [dm3] X_21310911_SNP [dm6]	G	A	9.854e^-6	0.851	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14924468	2R_14924468_SNP [dm3] 2R_19036963_SNP [dm6]	C	T	1.107e^-5	0.851	UPSTREAM CG15115 INTERGENIC
2L	14762573	2L_14762573_DEL [dm3] 2L_14762573_DEL [dm6]	CTTGGAC	C	1.298e^-5	0.851	UPSTREAM CSN1a DOWNSTREAM CG4691 EXON CR44858
2R	15493150	2R_15493150_SNP [dm3] 2R_19605645_SNP [dm6]	G	A	1.333e^-5	0.851	UPSTREAM CR44474 INTRON sm
X	14521033	X_14521033_SNP [dm3] X_14627000_SNP [dm6]	C	T	1.357e^-5	0.851	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	797173	3R_797173_SNP [dm3] 3R_4971451_SNP [dm6]	A	T	1.423e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	913379	2L_913379_SNP [dm3] 2L_913379_SNP [dm6]	G	A	1.426e^-5	0.851	UPSTREAM GluRIIC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	21182841	X_21182841_SNP [dm3] X_21311814_SNP [dm6]	G	C	1.471e^-5	0.851	INTRON CG1801
3L	20676384	3L_20676384_SNP [dm3] 3L_20683284_SNP [dm6]	G	T	1.491e^-5	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	569102	X_569102_SNP [dm3] X_675069_SNP [dm6]	G	C	1.519e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15770110	2L_15770110_SNP [dm3] 2L_15770110_SNP [dm6]	G	A	1.547e^-5	0.851	SYNONYMOUS_CODING Ku80
2L	15760213	2L_15760213_SNP [dm3] 2L_15760213_SNP [dm6]	G	A	1.551e^-5	0.851	SYNONYMOUS_CODING Gli	TF binding site BDTNP1_TFBS_dl
2L	14762559	2L_14762559_SNP [dm3] 2L_14762559_SNP [dm6]	T	C	1.588e^-5	0.851	UPSTREAM CSN1a DOWNSTREAM CG4691 EXON CR44858
2L	15770161	2L_15770161_SNP [dm3] 2L_15770161_SNP [dm6]	T	G	1.617e^-5	0.851	SYNONYMOUS_CODING Ku80
2L	15770155	2L_15770155_SNP [dm3] 2L_15770155_SNP [dm6]	C	T	1.632e^-5	0.851	SYNONYMOUS_CODING Ku80
2L	14762558	2L_14762558_SNP [dm3] 2L_14762558_SNP [dm6]	G	T	1.755e^-5	0.851	UPSTREAM CSN1a DOWNSTREAM CG4691 EXON CR44858
3R	26232123	3R_26232123_SNP [dm3] 3R_30406401_SNP [dm6]	T	G	1.773e^-5	0.851	INTERGENIC
2L	10669110	2L_10669110_SNP [dm3] 2L_10669110_SNP [dm6]	C	T	2.036e^-5	0.851	INTRON CG31871
2R	15493153	2R_15493153_SNP [dm3] 2R_19605648_SNP [dm6]	C	A	2.093e^-5	0.851	UPSTREAM CR44474 INTRON sm
3L	8381357	3L_8381357_SNP [dm3] 3L_8388257_SNP [dm6]	A	G	2.151e^-5	0.851	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4629307	2L_4629307_SNP [dm3] 2L_4629307_SNP [dm6]	T	C	2.180e^-5	0.851	INTERGENIC
2L	21703527	2L_21703527_SNP [dm3] 2L_21703527_SNP [dm6]	G	A	2.289e^-5	0.851	INTRON CG31619
2R	10273328	2R_10273328_SNP [dm3] 2R_14385823_SNP [dm6]	A	G	2.357e^-5	0.851	DOWNSTREAM Dh44-R1 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24397278	3R_24397278_SNP [dm3] 3R_28571556_SNP [dm6]	G	A	2.381e^-5	0.851	INTERGENIC	regulatory region REDfly_CRMs
2R	9462211	2R_9462211_SNP [dm3] 2R_13574706_SNP [dm6]	A	T	2.431e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462212	2R_9462212_INS [dm3] 2R_13574707_INS [dm6]	A	AC	2.431e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462219	2R_9462219_INS [dm3] 2R_13574714_INS [dm6]	A	AA	2.431e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462232	2R_9462232_SNP [dm3] 2R_13574727_SNP [dm6]	C	T	2.440e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3L	10302142	3L_10302142_SNP [dm3] 3L_10309042_SNP [dm6]	A	T	2.482e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15794958	3R_15794958_INS [dm3] 3R_19969236_INS [dm6]	T	TCGTTTAAGTT...	2.484e^-5	0.851	INTRON Hs6st
2L	15768687	2L_15768687_SNP [dm3] 2L_15768687_SNP [dm6]	A	C	2.536e^-5	0.851	UTR_3_PRIME Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3960473	2L_3960473_SNP [dm3] 2L_3960473_SNP [dm6]	A	G	2.563e^-5	0.851	INTRON fred
2R	9462221	2R_9462221_SNP [dm3] 2R_13574716_SNP [dm6]	A	T	2.622e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2L	4629677	2L_4629677_SNP [dm3] 2L_4629677_SNP [dm6]	A	G	2.658e^-5	0.851	INTERGENIC
X	13269028	X_13269028_SNP [dm3] X_13374995_SNP [dm6]	T	C	2.719e^-5	0.851	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12178543	2L_12178543_SNP [dm3] 2L_12178543_SNP [dm6]	C	A	2.735e^-5	0.851	UPSTREAM atilla INTRON aret	TF binding site mE1_TFBS_HSA
2L	8293814	2L_8293814_SNP [dm3] 2L_8293814_SNP [dm6]	C	A	2.900e^-5	0.851	INTRON Btk29A
2R	18441797	2R_18441797_SNP [dm3] 2R_22554292_SNP [dm6]	C	T	2.935e^-5	0.851	INTRON px
X	10623884	X_10623884_SNP [dm3] X_10729851_SNP [dm6]	C	T	2.952e^-5	0.851	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10624008	X_10624008_SNP [dm3] X_10729975_SNP [dm6]	A	T	2.952e^-5	0.851	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5237965	3L_5237965_SNP [dm3] 3L_5244865_SNP [dm6]	G	A	2.981e^-5	0.851	INTRON shep
2L	9990852	2L_9990852_SNP [dm3] 2L_9990852_SNP [dm6]	A	G	2.989e^-5	0.851	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	8907620	2R_8907620_SNP [dm3] 2R_13020115_SNP [dm6]	G	A	3.049e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	10623907	X_10623907_SNP [dm3] X_10729874_SNP [dm6]	T	A	3.094e^-5	0.851	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7064913	3L_7064913_SNP [dm3] 3L_7071813_SNP [dm6]	G	A	3.145e^-5	0.851	INTRON CG8641
2R	17924709	2R_17924709_SNP [dm3] 2R_22037204_SNP [dm6]	T	A	3.161e^-5	0.851	INTRON CG34370
2L	11305463	2L_11305463_SNP [dm3] 2L_11305463_SNP [dm6]	G	A	3.194e^-5	0.851	INTERGENIC
X	10623930	X_10623930_SNP [dm3] X_10729897_SNP [dm6]	A	T	3.219e^-5	0.851	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7086999	3L_7086999_SNP [dm3] 3L_7093899_SNP [dm6]	T	G	3.228e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7087011	3L_7087011_SNP [dm3] 3L_7093911_SNP [dm6]	A	T	3.229e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8682488	3L_8682488_SNP [dm3] 3L_8689388_SNP [dm6]	G	A	3.251e^-5	0.851	INTERGENIC
3L	9065146	3L_9065146_SNP [dm3] 3L_9072046_SNP [dm6]	A	G	3.280e^-5	0.851	INTRON CG4911	TF binding site BDTNP1_TFBS_dl
3R	16882770	3R_16882770_SNP [dm3] 3R_21057048_SNP [dm6]	G	T	3.359e^-5	0.851	INTRON Mvl
2L	10602013	2L_10602013_SNP [dm3] 2L_10602013_SNP [dm6]	A	G	3.392e^-5	0.851	INTRON Trim9
3R	12037526	3R_12037526_INS [dm3] 3R_16211804_INS [dm6]	T	TT	3.494e^-5	0.851	INTERGENIC
3L	8381353	3L_8381353_SNP [dm3] 3L_8388253_SNP [dm6]	T	A	3.509e^-5	0.851	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4629678	2L_4629678_SNP [dm3] 2L_4629678_SNP [dm6]	A	C	3.582e^-5	0.851	INTERGENIC
3L	8776267	3L_8776267_SNP [dm3] 3L_8783167_SNP [dm6]	C	A	3.614e^-5	0.851	INTRON Fhos
X	14520445	X_14520445_SNP [dm3] X_14626412_SNP [dm6]	T	C	3.635e^-5	0.851	INTRON NetA	TF binding site BDTNP1_TFBS_dl
2R	11921587	2R_11921587_SNP [dm3] 2R_16034082_SNP [dm6]	T	C	3.647e^-5	0.851	INTRON SP2353
3L	5237973	3L_5237973_SNP [dm3] 3L_5244873_SNP [dm6]	G	A	3.705e^-5	0.851	INTRON shep
3R	18263858	3R_18263858_SNP [dm3] 3R_22438136_SNP [dm6]	A	T	3.706e^-5	0.851	INTERGENIC
2R	7107346	2R_7107346_SNP [dm3] 2R_11219841_SNP [dm6]	A	T	3.723e^-5	0.851	UPSTREAM Syx6 & 1 other INTRON Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	1094001	X_1094001_DEL [dm3] X_1199968_DEL [dm6]	TACT	T	3.792e^-5	0.851	INTRON CG14625
2R	19129164	2R_19129164_SNP [dm3] 2R_23241641_SNP [dm6]	A	G	3.878e^-5	0.851	INTERGENIC
3L	10495364	3L_10495364_SNP [dm3] 3L_10502264_SNP [dm6]	G	A	3.927e^-5	0.851	INTRON A2bp1	TF binding site mE1_TFBS_inv
3R	12145221	3R_12145221_SNP [dm3] 3R_16319499_SNP [dm6]	G	A	4.036e^-5	0.851	INTRON Sulf1
2L	2862053	2L_2862053_SNP [dm3] 2L_2862053_SNP [dm6]	T	C	4.064e^-5	0.851	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17216074	3L_17216074_SNP [dm3] 3L_17222974_SNP [dm6]	A	G	4.075e^-5	0.851	INTRON Rbp6
X	569101	X_569101_SNP [dm3] X_675068_SNP [dm6]	C	T	4.096e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8074485	2L_8074485_SNP [dm3] 2L_8074485_SNP [dm6]	C	T	4.105e^-5	0.851	UTR_3_PRIME Mcr DOWNSTREAM Trf
X	15655605	X_15655605_SNP [dm3] X_15761572_SNP [dm6]	T	A	4.168e^-5	0.851	UPSTREAM Graf INTRON mRpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11305466	2L_11305466_SNP [dm3] 2L_11305466_SNP [dm6]	G	T	4.193e^-5	0.851	INTERGENIC
2L	4629811	2L_4629811_SNP [dm3] 2L_4629811_SNP [dm6]	T	C	4.211e^-5	0.851	INTERGENIC
2R	14966150	2R_14966150_SNP [dm3] 2R_19078645_SNP [dm6]	C	T	4.247e^-5	0.851	INTRON 5-HT1A
3L	9789610	3L_9789610_SNP [dm3] 3L_9796510_SNP [dm6]	A	C	4.269e^-5	0.851	INTRON Zasp67
3L	7087089	3L_7087089_SNP [dm3] 3L_7093989_SNP [dm6]	C	T	4.313e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10463456	2R_10463456_SNP [dm3] 2R_14575951_SNP [dm6]	A	T	4.369e^-5	0.851	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9462197	2R_9462197_INS [dm3] 2R_13574692_INS [dm6]	T	TTATATTT	4.380e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	13643476	2R_13643476_SNP [dm3] 2R_17755971_SNP [dm6]	C	A	4.387e^-5	0.851	SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	16431109	3L_16431109_SNP [dm3] 3L_16438009_SNP [dm6]	C	T	4.410e^-5	0.851	INTRON CG33158 & 1 other
2L	12654046	2L_12654046_SNP [dm3] 2L_12654046_SNP [dm6]	A	G	4.420e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15758212	2L_15758212_SNP [dm3] 2L_15758212_SNP [dm6]	A	G	4.514e^-5	0.851	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4629888	2L_4629888_SNP [dm3] 2L_4629888_SNP [dm6]	A	T	4.517e^-5	0.851	INTERGENIC
2L	5081204	2L_5081204_SNP [dm3] 2L_5081204_SNP [dm6]	A	G	4.546e^-5	0.851	INTRON pgant5
2R	14966072	2R_14966072_SNP [dm3] 2R_19078567_SNP [dm6]	A	G	4.546e^-5	0.851	INTRON 5-HT1A
2L	9990875	2L_9990875_SNP [dm3] 2L_9990875_SNP [dm6]	C	G	4.571e^-5	0.851	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	15758500	2L_15758500_SNP [dm3] 2L_15758500_SNP [dm6]	G	A	4.616e^-5	0.851	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14245541	2R_14245541_SNP [dm3] 2R_18358036_SNP [dm6]	T	C	4.689e^-5	0.851	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7087772	3L_7087772_SNP [dm3] 3L_7094672_SNP [dm6]	A	G	4.806e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	14959673	3L_14959673_SNP [dm3] 3L_14966573_SNP [dm6]	C	T	4.851e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	15768682	2L_15768682_SNP [dm3] 2L_15768682_SNP [dm6]	G	A	4.874e^-5	0.851	UTR_3_PRIME Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10647376	3L_10647376_DEL [dm3] 3L_10654276_DEL [dm6]	CATAC	C	4.925e^-5	0.851	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16920942	X_16920942_SNP [dm3] X_17026909_SNP [dm6]	A	G	4.960e^-5	0.851	INTRON CG45002
2R	9462169	2R_9462169_SNP [dm3] 2R_13574664_SNP [dm6]	C	G	4.972e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3R	9922736	3R_9922736_SNP [dm3] 3R_14097014_SNP [dm6]	T	C	5.021e^-5	0.851	UPSTREAM CCHa1 DOWNSTREAM CG9920 INTERGENIC
2L	15768452	2L_15768452_SNP [dm3] 2L_15768452_SNP [dm6]	G	A	5.036e^-5	0.851	UPSTREAM wek DOWNSTREAM Ku80 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	9789612	3L_9789612_SNP [dm3] 3L_9796512_SNP [dm6]	T	A	5.042e^-5	0.851	INTRON Zasp67
3R	15794423	3R_15794423_DEL [dm3] 3R_19968701_DEL [dm6]	TT	T	5.059e^-5	0.851	INTRON Hs6st
3L	16564367	3L_16564367_SNP [dm3] 3L_16571267_SNP [dm6]	T	G	5.219e^-5	0.851	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15768703	2L_15768703_SNP [dm3] 2L_15768703_SNP [dm6]	G	A	5.234e^-5	0.851	UTR_3_PRIME Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11305408	2L_11305408_SNP [dm3] 2L_11305408_SNP [dm6]	T	C	5.322e^-5	0.851	INTERGENIC
3L	7087133	3L_7087133_SNP [dm3] 3L_7094033_SNP [dm6]	G	A	5.328e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13898174	3L_13898174_SNP [dm3] 3L_13905074_SNP [dm6]	A	G	5.391e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9462308	2R_9462308_SNP [dm3] 2R_13574803_SNP [dm6]	C	T	5.465e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462311	2R_9462311_SNP [dm3] 2R_13574806_SNP [dm6]	C	T	5.465e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3L	7087735	3L_7087735_INS [dm3] 3L_7094635_INS [dm6]	T	TGAA	5.511e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2R	14680474	2R_14680474_SNP [dm3] 2R_18792969_SNP [dm6]	T	A	5.522e^-5	0.851	SPLICE_SITE_REGION CG15080 INTRON CG15080	TF binding site mE1_TFBS_cad
3L	7087263	3L_7087263_SNP [dm3] 3L_7094163_SNP [dm6]	A	G	5.537e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_sbb
3R	12142143	3R_12142143_SNP [dm3] 3R_16316421_SNP [dm6]	A	C	5.544e^-5	0.851	INTRON Sulf1
2R	14755528	2R_14755528_SNP [dm3] 2R_18868023_SNP [dm6]	C	A	5.559e^-5	0.851	DOWNSTREAM DptB INTRON CG43109
2L	15771494	2L_15771494_SNP [dm3] 2L_15771494_SNP [dm6]	C	T	5.618e^-5	0.851	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	6470092	3L_6470092_SNP [dm3] 3L_6476992_SNP [dm6]	T	C	5.634e^-5	0.851	INTRON CG42747
X	18708432	X_18708432_DEL [dm3] X_18814399_DEL [dm6]	TACT	T	5.660e^-5	0.851	INTRON CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3959993	2L_3959993_SNP [dm3] 2L_3959993_SNP [dm6]	C	T	5.677e^-5	0.851	INTRON fred
2L	15768551	2L_15768551_SNP [dm3] 2L_15768551_SNP [dm6]	T	A	5.716e^-5	0.851	UPSTREAM wek DOWNSTREAM Ku80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	20586523	3L_20586523_SNP [dm3] 3L_20593423_SNP [dm6]	T	A	5.843e^-5	0.851	INTERGENIC
3R	14370534	3R_14370534_SNP [dm3] 3R_18544812_SNP [dm6]	G	A	5.890e^-5	0.851	INTRON fru
2L	2982849	2L_2982849_SNP [dm3] 2L_2982849_SNP [dm6]	A	G	5.943e^-5	0.851	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4629931	2L_4629931_SNP [dm3] 2L_4629931_SNP [dm6]	T	C	5.950e^-5	0.851	INTERGENIC
3R	16143140	3R_16143140_SNP [dm3] 3R_20317418_SNP [dm6]	C	T	5.975e^-5	0.851	UPSTREAM CG42668 INTRON CG42668
3L	12631047	3L_12631047_SNP [dm3] 3L_12637947_SNP [dm6]	A	G	6.018e^-5	0.851	INTRON CR32111
3R	23232144	3R_23232144_INS [dm3] 3R_27406422_INS [dm6]	A	AA	6.021e^-5	0.851	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3446452	2R_3446452_SNP [dm3] 2R_7558947_SNP [dm6]	A	C	6.025e^-5	0.851	SYNONYMOUS_CODING Corin
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	6.047e^-5	0.851	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
2R	15493497	2R_15493497_SNP [dm3] 2R_19605992_SNP [dm6]	G	C	6.068e^-5	0.851	UPSTREAM CR44474 INTRON sm
2R	1387780	2R_1387780_SNP [dm3] 2R_5500275_SNP [dm6]	T	C	6.187e^-5	0.851	INTRON CG30438	transposable element FlyBase
2R	14966153	2R_14966153_SNP [dm3] 2R_19078648_SNP [dm6]	A	T	6.198e^-5	0.851	INTRON 5-HT1A
3R	12469605	3R_12469605_SNP [dm3] 3R_16643883_SNP [dm6]	G	A	6.342e^-5	0.851	UTR_5_PRIME CG10326 DOWNSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	6.380e^-5	0.851	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	6.380e^-5	0.851	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	8682631	3L_8682631_SNP [dm3] 3L_8689531_SNP [dm6]	A	G	6.391e^-5	0.851	INTERGENIC
2R	14965967	2R_14965967_SNP [dm3] 2R_19078462_SNP [dm6]	G	A	6.526e^-5	0.851	INTRON 5-HT1A
3L	8776294	3L_8776294_SNP [dm3] 3L_8783194_SNP [dm6]	C	A	6.566e^-5	0.851	INTRON Fhos
3L	7087239	3L_7087239_SNP [dm3] 3L_7094139_SNP [dm6]	C	A	6.621e^-5	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15928505	2L_15928505_SNP [dm3] 2L_15928505_SNP [dm6]	A	T	6.633e^-5	0.851	INTRON beat-Ib
X	11856023	X_11856023_SNP [dm3] X_11961990_SNP [dm6]	G	A	6.668e^-5	0.851	INTRON cac
2L	4241818	2L_4241818_SNP [dm3] 2L_4241818_SNP [dm6]	T	C	6.676e^-5	0.851	UPSTREAM CR45720 DOWNSTREAM CR44058 INTRON CR44058
X	18708437	X_18708437_SNP [dm3] X_18814404_SNP [dm6]	C	T	6.716e^-5	0.851	INTRON CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4629865	2L_4629865_SNP [dm3] 2L_4629865_SNP [dm6]	T	C	6.756e^-5	0.851	INTERGENIC
2R	14680468	2R_14680468_SNP [dm3] 2R_18792963_SNP [dm6]	A	T	6.850e^-5	0.851	INTRON CG15080	TF binding site mE1_TFBS_cad
2L	11116483	2L_11116483_SNP [dm3] 2L_11116483_SNP [dm6]	G	A	7.049e^-5	0.851	DOWNSTREAM Gr32a INTRON CG6230	TF binding site mE1_TFBS_cad
X	14520137	X_14520137_SNP [dm3] X_14626104_SNP [dm6]	T	C	7.074e^-5	0.851	INTRON NetA
2R	10463457	2R_10463457_SNP [dm3] 2R_14575952_SNP [dm6]	T	C	7.079e^-5	0.851	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15163948	2L_15163948_SNP [dm3] 2L_15163948_SNP [dm6]	A	G	7.155e^-5	0.851	INTRON CG4168
2L	5896512	2L_5896512_SNP [dm3] 2L_5896512_SNP [dm6]	G	A	7.189e^-5	0.851	INTERGENIC
X	12655583	X_12655583_SNP [dm3] X_12761550_SNP [dm6]	C	T	7.218e^-5	0.851	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl
2L	4629881	2L_4629881_SNP [dm3] 2L_4629881_SNP [dm6]	A	C	7.330e^-5	0.851	INTERGENIC
3R	23537421	3R_23537421_SNP [dm3] 3R_27711699_SNP [dm6]	A	G	7.334e^-5	0.851	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14520290	X_14520290_SNP [dm3] X_14626257_SNP [dm6]	G	T	7.362e^-5	0.851	INTRON NetA
2L	4629891	2L_4629891_SNP [dm3] 2L_4629891_SNP [dm6]	T	A	7.424e^-5	0.851	INTERGENIC
2L	15938261	2L_15938261_SNP [dm3] 2L_15938261_SNP [dm6]	T	C	7.462e^-5	0.851	INTRON beat-Ib
2R	14965959	2R_14965959_SNP [dm3] 2R_19078454_SNP [dm6]	A	T	7.559e^-5	0.851	INTRON 5-HT1A
X	22141940	X_22141940_SNP [dm3] X_22740104_SNP [dm6]	A	C	7.663e^-5	0.851	INTRON CR44997
2R	13805777	2R_13805777_SNP [dm3] 2R_17918272_SNP [dm6]	T	A	7.678e^-5	0.851	INTRON Elk
3L	20676383	3L_20676383_SNP [dm3] 3L_20683283_SNP [dm6]	G	T	7.685e^-5	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12037542	3R_12037542_SNP [dm3] 3R_16211820_SNP [dm6]	C	T	7.707e^-5	0.851	INTERGENIC
2R	16459010	2R_16459010_SNP [dm3] 2R_20571505_SNP [dm6]	G	A	7.708e^-5	0.851	INTRON qsm
2L	9990783	2L_9990783_SNP [dm3] 2L_9990783_SNP [dm6]	G	A	7.823e^-5	0.851	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15757462	2L_15757462_SNP [dm3] 2L_15757462_SNP [dm6]	G	A	7.940e^-5	0.851	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14520273	X_14520273_SNP [dm3] X_14626240_SNP [dm6]	T	C	7.953e^-5	0.851	INTRON NetA
2R	18780695	2R_18780695_SNP [dm3] 2R_22893172_SNP [dm6]	C	T	7.961e^-5	0.851	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14369267	3R_14369267_SNP [dm3] 3R_18543545_SNP [dm6]	T	A	7.992e^-5	0.851	INTRON fru
2R	9462146	2R_9462146_SNP [dm3] 2R_13574641_SNP [dm6]	G	T	8.022e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	14245700	2R_14245700_SNP [dm3] 2R_18358195_SNP [dm6]	A	G	8.141e^-5	0.851	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5885137	2L_5885137_SNP [dm3] 2L_5885137_SNP [dm6]	C	T	8.169e^-5	0.851	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG44574
3R	8268032	3R_8268032_SNP [dm3] 3R_12442310_SNP [dm6]	T	C	8.177e^-5	0.851	INTRON Desat1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	9462294	2R_9462294_SNP [dm3] 2R_13574789_SNP [dm6]	T	C	8.184e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	18255004	2R_18255004_SNP [dm3] 2R_22367499_SNP [dm6]	G	T	8.227e^-5	0.851	INTRON Liprin-gamma
2L	11529300	2L_11529300_SNP [dm3] 2L_11529300_SNP [dm6]	T	G	8.378e^-5	0.851	UTR_3_PRIME CG31706 DOWNSTREAM CG31706	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	23539441	3R_23539441_SNP [dm3] 3R_27713719_SNP [dm6]	G	A	8.436e^-5	0.851	INTERGENIC
3R	16100237	3R_16100237_SNP [dm3] 3R_20274515_SNP [dm6]	A	T	8.620e^-5	0.851	INTRON cic
2R	15049573	2R_15049573_SNP [dm3] 2R_19162068_SNP [dm6]	C	T	8.639e^-5	0.851	UTR_3_PRIME ena
2L	15759022	2L_15759022_SNP [dm3] 2L_15759022_SNP [dm6]	C	T	8.642e^-5	0.851	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7088857	3L_7088857_SNP [dm3] 3L_7095757_SNP [dm6]	C	T	8.653e^-5	0.851	INTRON form3	TF binding site BDTNP1_TFBS_da
3R	23796404	3R_23796404_SNP [dm3] 3R_27970682_SNP [dm6]	C	T	8.796e^-5	0.851	INTRON betaTub97EF
2R	17536843	2R_17536843_SNP [dm3] 2R_21649338_SNP [dm6]	G	A	8.827e^-5	0.851	INTRON CG10082	TF binding site BDTNP1_TFBS_dl
3R	24379072	3R_24379072_SNP [dm3] 3R_28553350_SNP [dm6]	C	A	8.832e^-5	0.851	INTERGENIC
2R	15317443	2R_15317443_SNP [dm3] 2R_19429938_SNP [dm6]	G	A	8.833e^-5	0.851	SYNONYMOUS_CODING CalpA DOWNSTREAM CalpA & 1 other
X	10624032	X_10624032_SNP [dm3] X_10729999_SNP [dm6]	C	T	8.878e^-5	0.851	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14965966	2R_14965966_SNP [dm3] 2R_19078461_SNP [dm6]	T	C	9.016e^-5	0.851	INTRON 5-HT1A
X	21914068	X_21914068_SNP [dm3] X_22512232_SNP [dm6]	G	A	9.163e^-5	0.851	INTERGENIC
2R	7149429	2R_7149429_SNP [dm3] 2R_11261924_SNP [dm6]	T	G	9.203e^-5	0.851	UPSTREAM Cpr47Ed INTERGENIC
2R	6138825	2R_6138825_SNP [dm3] 2R_10251320_SNP [dm6]	C	A	9.462e^-5	0.851	INTRON CG12913 & 1 other
3L	10647373	3L_10647373_SNP [dm3] 3L_10654273_SNP [dm6]	A	C	9.517e^-5	0.851	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17661320	3R_17661320_SNP [dm3] 3R_21835598_SNP [dm6]	G	T	9.537e^-5	0.851	INTERGENIC
3L	7089034	3L_7089034_SNP [dm3] 3L_7095934_SNP [dm6]	C	G	9.552e^-5	0.851	INTRON form3
2R	9462152	2R_9462152_SNP [dm3] 2R_13574647_SNP [dm6]	T	A	9.569e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462161	2R_9462161_SNP [dm3] 2R_13574656_SNP [dm6]	G	T	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462166	2R_9462166_SNP [dm3] 2R_13574661_SNP [dm6]	G	A	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462171	2R_9462171_SNP [dm3] 2R_13574666_SNP [dm6]	C	A	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462176	2R_9462176_SNP [dm3] 2R_13574671_SNP [dm6]	A	C	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462183	2R_9462183_SNP [dm3] 2R_13574678_SNP [dm6]	C	T	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462192	2R_9462192_SNP [dm3] 2R_13574687_SNP [dm6]	G	T	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2R	9462193	2R_9462193_INS [dm3] 2R_13574688_INS [dm6]	T	TTTT	9.579e^-5	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
2L	1036747	2L_1036747_SNP [dm3] 2L_1036747_SNP [dm6]	A	G	9.756e^-5	0.851	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16243945	2R_16243945_SNP [dm3] 2R_20356440_SNP [dm6]	A	T	9.866e^-5	0.851	INTERGENIC
2L	13768040	2L_13768040_SNP [dm3] 2L_13768040_SNP [dm6]	T	A	9.951e^-5	0.851	INTRON TM9SF4
2R	19385064	2R_19385064_SNP [dm3] 2R_23497541_SNP [dm6]	C	A	9.986e^-5	0.851	INTERGENIC
2R	1387816	2R_1387816_SNP [dm3] 2R_5500311_SNP [dm6]	C	T	1.002e^-4	0.851	INTRON CG30438	transposable element FlyBase
2L	7449821	2L_7449821_SNP [dm3] 2L_7449821_SNP [dm6]	T	G	1.017e^-4	0.851	UTR_5_PRIME santa-maria INTRON santa-maria
2R	12420820	2R_12420820_SNP [dm3] 2R_16533315_SNP [dm6]	G	C	1.018e^-4	0.851	UTR_3_PRIME Sema-2a
3R	11991080	3R_11991080_SNP [dm3] 3R_16165358_SNP [dm6]	G	A	1.019e^-4	0.851	INTRON CG6006
2R	11910520	2R_11910520_SNP [dm3] 2R_16023015_SNP [dm6]	C	T	1.019e^-4	0.851	INTRON CG8399
2R	9462185	2R_9462185_SNP [dm3] 2R_13574680_SNP [dm6]	A	C	1.021e^-4	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3R	24391520	3R_24391520_SNP [dm3] 3R_28565798_SNP [dm6]	A	G	1.022e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	26232072	3R_26232072_SNP [dm3] 3R_30406350_SNP [dm6]	A	G	1.023e^-4	0.851	INTERGENIC
X	8079306	X_8079306_SNP [dm3] X_8185273_SNP [dm6]	T	C	1.024e^-4	0.851	INTRON sdt
X	21182789	X_21182789_SNP [dm3] X_21311762_SNP [dm6]	T	A	1.024e^-4	0.851	INTRON CG1801
2R	16243851	2R_16243851_SNP [dm3] 2R_20356346_SNP [dm6]	T	C	1.030e^-4	0.851	INTERGENIC
2L	15769198	2L_15769198_SNP [dm3] 2L_15769198_SNP [dm6]	C	T	1.037e^-4	0.851	SYNONYMOUS_CODING Ku80 UPSTREAM wek
2R	17924704	2R_17924704_SNP [dm3] 2R_22037199_SNP [dm6]	A	C	1.040e^-4	0.851	INTRON CG34370
3R	1961612	3R_1961612_SNP [dm3] 3R_6135890_SNP [dm6]	T	A	1.046e^-4	0.851	INTERGENIC
3R	1961613	3R_1961613_SNP [dm3] 3R_6135891_SNP [dm6]	A	C	1.046e^-4	0.851	INTERGENIC
2L	11305358	2L_11305358_SNP [dm3] 2L_11305358_SNP [dm6]	G	A	1.051e^-4	0.851	INTERGENIC
2L	6678716	2L_6678716_SNP [dm3] 2L_6678716_SNP [dm6]	T	A	1.054e^-4	0.851	UTR_3_PRIME Nhe3 DOWNSTREAM Nhe3 INTRON Nhe3	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17924701	2R_17924701_SNP [dm3] 2R_22037196_SNP [dm6]	A	G	1.058e^-4	0.851	INTRON CG34370
2R	15060169	2R_15060169_SNP [dm3] 2R_19172664_SNP [dm6]	A	T	1.058e^-4	0.851	INTRON CG10737
3R	17813875	3R_17813875_SNP [dm3] 3R_21988153_SNP [dm6]	G	T	1.060e^-4	0.851	INTRON Eip93F
3R	23537216	3R_23537216_SNP [dm3] 3R_27711494_SNP [dm6]	A	T	1.062e^-4	0.851	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15768536	2L_15768536_SNP [dm3] 2L_15768536_SNP [dm6]	C	G	1.070e^-4	0.851	UPSTREAM wek DOWNSTREAM Ku80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13805950	2R_13805950_SNP [dm3] 2R_17918445_SNP [dm6]	G	C	1.083e^-4	0.851	INTRON Elk
3L	7086920	3L_7086920_SNP [dm3] 3L_7093820_SNP [dm6]	G	T	1.084e^-4	0.851	UTR_3_PRIME Cpr65Ec UPSTREAM form3	TF binding site mE1_TFBS_HSA
2R	1386475	2R_1386475_SNP [dm3] 2R_5498970_SNP [dm6]	A	T	1.089e^-4	0.851	INTRON CG30438
2L	10349335	2L_10349335_SNP [dm3] 2L_10349335_SNP [dm6]	A	G	1.091e^-4	0.851	INTRON CG34367
2R	13095604	2R_13095604_SNP [dm3] 2R_17208099_SNP [dm6]	G	A	1.095e^-4	0.851	INTERGENIC
X	14652975	X_14652975_SNP [dm3] X_14758942_SNP [dm6]	A	G	1.108e^-4	0.851	SYNONYMOUS_CODING CG15890	TF binding site BDTNP1_TFBS_da
3L	5895007	3L_5895007_SNP [dm3] 3L_5901907_SNP [dm6]	A	G	1.126e^-4	0.851	SYNONYMOUS_CODING QC DOWNSTREAM CG32409 & 1 other
2R	15738247	2R_15738247_SNP [dm3] 2R_19850742_SNP [dm6]	A	G	1.132e^-4	0.851	INTERGENIC
3R	14175845	3R_14175845_SNP [dm3] 3R_18350123_SNP [dm6]	T	A	1.137e^-4	0.851	INTRON CG15803
3L	7087079	3L_7087079_SNP [dm3] 3L_7093979_SNP [dm6]	G	A	1.139e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17234695	2R_17234695_SNP [dm3] 2R_21347190_SNP [dm6]	G	A	1.141e^-4	0.851	SPLICE_SITE_REGION CG9822 SYNONYMOUS_CODING CG9822	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12662156	3L_12662156_SNP [dm3] 3L_12669056_SNP [dm6]	A	G	1.144e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13910337	2L_13910337_SNP [dm3] 2L_13910337_SNP [dm6]	G	A	1.151e^-4	0.851	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13269063	X_13269063_SNP [dm3] X_13375030_SNP [dm6]	C	T	1.158e^-4	0.851	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21761607	2L_21761607_INS [dm3] 2L_21761607_INS [dm6]	T	TT	1.166e^-4	0.851	DOWNSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12141871	3R_12141871_SNP [dm3] 3R_16316149_SNP [dm6]	T	A	1.172e^-4	0.851	INTRON Sulf1
3L	9077706	3L_9077706_SNP [dm3] 3L_9084606_SNP [dm6]	T	G	1.187e^-4	0.851	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
2R	16999277	2R_16999277_SNP [dm3] 2R_21111772_SNP [dm6]	G	A	1.188e^-4	0.851	INTRON ktub
2L	12653655	2L_12653655_SNP [dm3] 2L_12653655_SNP [dm6]	G	C	1.192e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15398627	3L_15398627_SNP [dm3] 3L_15405527_SNP [dm6]	A	C	1.201e^-4	0.851	INTERGENIC
2L	3960779	2L_3960779_SNP [dm3] 2L_3960779_SNP [dm6]	C	G	1.205e^-4	0.851	INTRON fred
2R	14965997	2R_14965997_SNP [dm3] 2R_19078492_SNP [dm6]	T	C	1.210e^-4	0.851	INTRON 5-HT1A
3L	7087009	3L_7087009_SNP [dm3] 3L_7093909_SNP [dm6]	A	G	1.213e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23539295	3R_23539295_SNP [dm3] 3R_27713573_SNP [dm6]	G	C	1.216e^-4	0.851	INTERGENIC
3R	20321150	3R_20321150_SNP [dm3] 3R_24495428_SNP [dm6]	C	A	1.221e^-4	0.851	INTERGENIC
2L	7449825	2L_7449825_SNP [dm3] 2L_7449825_SNP [dm6]	T	C	1.223e^-4	0.851	UTR_5_PRIME santa-maria INTRON santa-maria
X	3169119	X_3169119_SNP [dm3] X_3275086_SNP [dm6]	T	C	1.227e^-4	0.851	INTRON dnc
3R	11992066	3R_11992066_SNP [dm3] 3R_16166344_SNP [dm6]	C	A	1.228e^-4	0.851	INTRON CG6006	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15566111	3R_15566111_SNP [dm3] 3R_19740389_SNP [dm6]	C	T	1.233e^-4	0.851	INTRON GluClalpha
2R	18255194	2R_18255194_SNP [dm3] 2R_22367689_SNP [dm6]	T	A	1.241e^-4	0.851	INTRON Liprin-gamma
2R	19385158	2R_19385158_SNP [dm3] 2R_23497635_SNP [dm6]	G	C	1.241e^-4	0.851	INTERGENIC
X	19043330	X_19043330_SNP [dm3] X_19149297_SNP [dm6]	T	A	1.245e^-4	0.851	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
X	22141968	X_22141968_SNP [dm3] X_22740132_SNP [dm6]	G	A	1.247e^-4	0.851	INTRON CR44997
2L	8721759	2L_8721759_SNP [dm3] 2L_8721759_SNP [dm6]	A	G	1.258e^-4	0.851	INTRON raw
2L	11310931	2L_11310931_SNP [dm3] 2L_11310931_SNP [dm6]	G	T	1.259e^-4	0.851	INTERGENIC
3L	8823972	3L_8823972_SNP [dm3] 3L_8830872_SNP [dm6]	C	T	1.260e^-4	0.851	INTRON dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	16864911	3R_16864911_SNP [dm3] 3R_21039189_SNP [dm6]	G	A	1.263e^-4	0.851	INTRON Dhc93AB
2R	17655994	2R_17655994_SNP [dm3] 2R_21768489_SNP [dm6]	C	T	1.264e^-4	0.851	NON_SYNONYMOUS_CODING CG30395
2L	2846990	2L_2846990_INS [dm3] 2L_2846990_INS [dm6]	AA	TTG	1.269e^-4	0.851	UPSTREAM CG2983 INTRON CG3117
X	12594343	X_12594343_SNP [dm3] X_12700310_SNP [dm6]	A	G	1.269e^-4	0.851	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10452618	2L_10452618_SNP [dm3] 2L_10452618_SNP [dm6]	G	T	1.273e^-4	0.851	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2R	9462156	2R_9462156_SNP [dm3] 2R_13574651_SNP [dm6]	G	A	1.277e^-4	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3L	19550789	3L_19550789_SNP [dm3] 3L_19557689_SNP [dm6]	A	T	1.287e^-4	0.851	UPSTREAM CR44677 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7089499	3L_7089499_SNP [dm3] 3L_7096399_SNP [dm6]	G	T	1.288e^-4	0.851	INTRON form3
3R	11696548	3R_11696548_SNP [dm3] 3R_15870826_SNP [dm6]	C	T	1.289e^-4	0.851	INTRON CG31183
3R	15250261	3R_15250261_SNP [dm3] 3R_19424539_SNP [dm6]	G	A	1.291e^-4	0.851	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9065119	3L_9065119_SNP [dm3] 3L_9072019_SNP [dm6]	T	A	1.293e^-4	0.851	INTRON CG4911	TF binding site BDTNP1_TFBS_dl
3R	24044976	3R_24044976_SNP [dm3] 3R_28219254_SNP [dm6]	A	T	1.294e^-4	0.851	INTRON CG34354
3R	11667757	3R_11667757_SNP [dm3] 3R_15842035_SNP [dm6]	C	A	1.295e^-4	0.851	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_HSA
2R	18986674	2R_18986674_SNP [dm3] 2R_23099151_SNP [dm6]	A	G	1.297e^-4	0.851	DOWNSTREAM RpL37b INTERGENIC
3R	14506415	3R_14506415_SNP [dm3] 3R_18680693_SNP [dm6]	A	G	1.306e^-4	0.851	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	1.307e^-4	0.851	INTRON shep
2R	14388564	2R_14388564_SNP [dm3] 2R_18501059_SNP [dm6]	C	T	1.309e^-4	0.851	INTERGENIC
X	19617989	X_19617989_SNP [dm3] X_19723956_SNP [dm6]	A	G	1.317e^-4	0.851	INTRON CG12531
X	20503958	X_20503958_SNP [dm3] X_20632931_SNP [dm6]	T	C	1.320e^-4	0.851	INTERGENIC	transposable element FlyBase
2L	15768654	2L_15768654_SNP [dm3] 2L_15768654_SNP [dm6]	T	A	1.324e^-4	0.851	UTR_3_PRIME Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4847122	2L_4847122_SNP [dm3] 2L_4847122_SNP [dm6]	C	A	1.333e^-4	0.851	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7087266	3L_7087266_SNP [dm3] 3L_7094166_SNP [dm6]	T	A	1.333e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_sbb
3R	24405195	3R_24405195_SNP [dm3] 3R_28579473_SNP [dm6]	C	G	1.337e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	6181632	2R_6181632_SNP [dm3] 2R_10294127_SNP [dm6]	A	T	1.337e^-4	0.851	INTRON CAP	TF binding site mE1_TFBS_sens
3R	16466540	3R_16466540_SNP [dm3] 3R_20640818_SNP [dm6]	A	G	1.337e^-4	0.851	SYNONYMOUS_CODING Lrrk
2L	12163963	2L_12163963_SNP [dm3] 2L_12163963_SNP [dm6]	A	T	1.344e^-4	0.851	UPSTREAM ZnT33D INTRON CG31760
3L	5255508	3L_5255508_SNP [dm3] 3L_5262408_SNP [dm6]	C	T	1.350e^-4	0.851	INTRON shep
2L	7230655	2L_7230655_SNP [dm3] 2L_7230655_SNP [dm6]	A	T	1.354e^-4	0.851	INTRON Ndae1
2L	3959847	2L_3959847_SNP [dm3] 2L_3959847_SNP [dm6]	T	C	1.354e^-4	0.851	INTRON fred
2R	15049697	2R_15049697_SNP [dm3] 2R_19162192_SNP [dm6]	G	A	1.356e^-4	0.851	UTR_3_PRIME ena DOWNSTREAM ena
2R	14966122	2R_14966122_SNP [dm3] 2R_19078617_SNP [dm6]	G	A	1.365e^-4	0.851	INTRON 5-HT1A
3R	16467799	3R_16467799_SNP [dm3] 3R_20642077_SNP [dm6]	A	G	1.383e^-4	0.851	SYNONYMOUS_CODING Lrrk
2L	4847132	2L_4847132_SNP [dm3] 2L_4847132_SNP [dm6]	G	A	1.389e^-4	0.851	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15320744	3R_15320744_SNP [dm3] 3R_19495022_SNP [dm6]	A	T	1.390e^-4	0.851	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5237996	3L_5237996_SNP [dm3] 3L_5244896_SNP [dm6]	C	A	1.396e^-4	0.851	INTRON shep
2L	3883239	2L_3883239_SNP [dm3] 2L_3883239_SNP [dm6]	G	A	1.396e^-4	0.851	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3959157	2L_3959157_INS [dm3] 2L_3959157_INS [dm6]	T	TT	1.419e^-4	0.851	INTRON fred
3L	10782678	3L_10782678_SNP [dm3] 3L_10789578_SNP [dm6]	A	G	1.425e^-4	0.851	EXON CR44545
X	15541670	X_15541670_SNP [dm3] X_15647637_SNP [dm6]	A	G	1.429e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8721782	2L_8721782_SNP [dm3] 2L_8721782_SNP [dm6]	G	A	1.431e^-4	0.851	INTRON raw
3R	11991086	3R_11991086_SNP [dm3] 3R_16165364_SNP [dm6]	T	A	1.432e^-4	0.851	INTRON CG6006
2R	14680465	2R_14680465_SNP [dm3] 2R_18792960_SNP [dm6]	T	A	1.433e^-4	0.851	INTRON CG15080	TF binding site mE1_TFBS_cad
2L	7577390	2L_7577390_SNP [dm3] 2L_7577390_SNP [dm6]	C	T	1.438e^-4	0.851	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	8822967	3L_8822967_SNP [dm3] 3L_8829867_SNP [dm6]	A	G	1.448e^-4	0.851	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4626941	2L_4626941_SNP [dm3] 2L_4626941_SNP [dm6]	G	A	1.452e^-4	0.851	INTERGENIC
3R	24056059	3R_24056059_SNP [dm3] 3R_28230337_SNP [dm6]	A	G	1.455e^-4	0.851	INTRON CG34354
3R	22022450	3R_22022450_DEL [dm3] 3R_26196728_DEL [dm6]	TGT	T	1.455e^-4	0.851	INTRON CR44320
3R	11991078	3R_11991078_SNP [dm3] 3R_16165356_SNP [dm6]	A	C	1.459e^-4	0.851	INTRON CG6006
2L	15770275	2L_15770275_SNP [dm3] 2L_15770275_SNP [dm6]	G	A	1.471e^-4	0.851	SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826
X	14520875	X_14520875_SNP [dm3] X_14626842_SNP [dm6]	C	G	1.475e^-4	0.851	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13272545	3L_13272545_SNP [dm3] 3L_13279445_SNP [dm6]	C	G	1.484e^-4	0.851	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
X	13269107	X_13269107_SNP [dm3] X_13375074_SNP [dm6]	A	C	1.488e^-4	0.851	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14520667	X_14520667_SNP [dm3] X_14626634_SNP [dm6]	C	T	1.495e^-4	0.851	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1733778	3L_1733778_SNP [dm3] 3L_1733778_SNP [dm6]	C	A	1.495e^-4	0.851	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	12426568	X_12426568_SNP [dm3] X_12532535_SNP [dm6]	T	C	1.501e^-4	0.851	INTRON CG43921
2L	15164022	2L_15164022_SNP [dm3] 2L_15164022_SNP [dm6]	C	T	1.514e^-4	0.851	INTRON CG4168
3L	7087325	3L_7087325_SNP [dm3] 3L_7094225_SNP [dm6]	C	A	1.517e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	15768458	2L_15768458_SNP [dm3] 2L_15768458_SNP [dm6]	T	G	1.518e^-4	0.851	UPSTREAM wek DOWNSTREAM Ku80 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	7087036	3L_7087036_SNP [dm3] 3L_7093936_SNP [dm6]	T	A	1.525e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5255439	3L_5255439_SNP [dm3] 3L_5262339_SNP [dm6]	G	T	1.529e^-4	0.851	INTRON shep
X	20317553	X_20317553_SNP [dm3] X_20446526_SNP [dm6]	C	T	1.536e^-4	0.851	NON_SYNONYMOUS_CODING CG42578 DOWNSTREAM CG1695
2R	9979101	2R_9979101_SNP [dm3] 2R_14091596_SNP [dm6]	T	C	1.543e^-4	0.851	DOWNSTREAM CG42287 INTRON Prosap & 1 other
2L	15928499	2L_15928499_SNP [dm3] 2L_15928499_SNP [dm6]	T	C	1.547e^-4	0.851	INTRON beat-Ib
3R	24390448	3R_24390448_SNP [dm3] 3R_28564726_SNP [dm6]	A	G	1.553e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14370559	3R_14370559_SNP [dm3] 3R_18544837_SNP [dm6]	A	T	1.554e^-4	0.851	INTRON fru
3R	26232139	3R_26232139_SNP [dm3] 3R_30406417_SNP [dm6]	A	G	1.556e^-4	0.851	INTERGENIC
2L	2397676	2L_2397676_SNP [dm3] 2L_2397676_SNP [dm6]	A	G	1.560e^-4	0.851	INTRON VGlut
2L	21637607	2L_21637607_SNP [dm3] 2L_21637607_SNP [dm6]	G	C	1.562e^-4	0.851	INTRON Ac3
2L	9990869	2L_9990869_SNP [dm3] 2L_9990869_SNP [dm6]	G	T	1.565e^-4	0.851	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	18255380	2R_18255380_SNP [dm3] 2R_22367875_SNP [dm6]	C	A	1.577e^-4	0.851	INTRON Liprin-gamma
3R	18022054	3R_18022054_SNP [dm3] 3R_22196332_SNP [dm6]	G	C	1.577e^-4	0.851	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15653361	X_15653361_SNP [dm3] X_15759328_SNP [dm6]	T	C	1.578e^-4	0.851	INTRON Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	13898184	3L_13898184_SNP [dm3] 3L_13905084_SNP [dm6]	C	T	1.580e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7087635	3L_7087635_SNP [dm3] 3L_7094535_SNP [dm6]	A	C	1.580e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	insulator Insulator_Class_I.mE01
2L	4958095	2L_4958095_SNP [dm3] 2L_4958095_SNP [dm6]	A	G	1.583e^-4	0.851	NON_SYNONYMOUS_CODING Marcal1 UPSTREAM CG34124
3R	12141696	3R_12141696_SNP [dm3] 3R_16315974_SNP [dm6]	C	A	1.586e^-4	0.851	INTRON Sulf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	7087058	3L_7087058_INS [dm3] 3L_7093958_INS [dm6]	A	AG	1.590e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7088928	3L_7088928_SNP [dm3] 3L_7095828_SNP [dm6]	C	T	1.594e^-4	0.851	INTRON form3	TF binding site BDTNP1_TFBS_da
3L	9065123	3L_9065123_SNP [dm3] 3L_9072023_SNP [dm6]	A	G	1.614e^-4	0.851	INTRON CG4911	TF binding site BDTNP1_TFBS_dl
2L	15752149	2L_15752149_SNP [dm3] 2L_15752149_SNP [dm6]	A	C	1.617e^-4	0.851	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2306518	2L_2306518_SNP [dm3] 2L_2306518_SNP [dm6]	T	G	1.617e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5352692	2R_5352692_DEL [dm3] 2R_9465187_DEL [dm6]	GA	G	1.623e^-4	0.851	INTRON Camta
2L	2306554	2L_2306554_SNP [dm3] 2L_2306554_SNP [dm6]	A	G	1.624e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9462242	2R_9462242_SNP [dm3] 2R_13574737_SNP [dm6]	T	A	1.626e^-4	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3L	12240805	3L_12240805_SNP [dm3] 3L_12247705_SNP [dm6]	C	T	1.631e^-4	0.851	INTRON app
3L	7087013	3L_7087013_INS [dm3] 3L_7093913_INS [dm6]	T	TCTATATGTATATATATATA...	1.640e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11935108	3L_11935108_SNP [dm3] 3L_11942008_SNP [dm6]	A	C	1.641e^-4	0.851	UTR_5_PRIME Rpt4R UPSTREAM Rpt4R
3L	9077601	3L_9077601_SNP [dm3] 3L_9084501_SNP [dm6]	A	G	1.642e^-4	0.851	SYNONYMOUS_CODING Tequila INTRON Tequila
2R	9462240	2R_9462240_SNP [dm3] 2R_13574735_SNP [dm6]	C	T	1.646e^-4	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
X	16230156	X_16230156_INS [dm3] X_16336123_INS [dm6]	T	TAACTTTCGT	1.647e^-4	0.851	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4688849	2L_4688849_SNP [dm3] 2L_4688849_SNP [dm6]	T	G	1.655e^-4	0.851	UTR_3_PRIME Elba3 DOWNSTREAM CG3251
2R	11920767	2R_11920767_SNP [dm3] 2R_16033262_SNP [dm6]	C	G	1.659e^-4	0.851	INTRON SP2353
2L	9309044	2L_9309044_SNP [dm3] 2L_9309044_SNP [dm6]	T	G	1.660e^-4	0.851	INTERGENIC
3R	15794882	3R_15794882_SNP [dm3] 3R_19969160_SNP [dm6]	T	C	1.669e^-4	0.851	INTRON Hs6st
2L	22111493	2L_22111493_SNP [dm3] 2L_22111493_SNP [dm6]	C	T	1.673e^-4	0.851	INTERGENIC	transposable element FlyBase
2R	11003665	2R_11003665_SNP [dm3] 2R_15116160_SNP [dm6]	T	C	1.676e^-4	0.851	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21912422	X_21912422_SNP [dm3] X_22510586_SNP [dm6]	A	C	1.679e^-4	0.851	INTERGENIC	transposable element FlyBase
3R	24164456	3R_24164456_SNP [dm3] 3R_28338734_SNP [dm6]	C	T	1.689e^-4	0.851	SYNONYMOUS_CODING Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26697680	3R_26697680_SNP [dm3] 3R_30871958_SNP [dm6]	C	G	1.694e^-4	0.851	NON_SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9922679	3R_9922679_SNP [dm3] 3R_14096957_SNP [dm6]	T	G	1.714e^-4	0.851	UPSTREAM CCHa1 DOWNSTREAM CG9920 INTERGENIC
3L	10495310	3L_10495310_SNP [dm3] 3L_10502210_SNP [dm6]	A	G	1.722e^-4	0.851	INTRON A2bp1	TF binding site mE1_TFBS_inv
3R	9871728	3R_9871728_SNP [dm3] 3R_14046006_SNP [dm6]	T	A	1.722e^-4	0.851	INTERGENIC
2R	14069827	2R_14069827_SNP [dm3] 2R_18182322_SNP [dm6]	G	A	1.723e^-4	0.851	SYNONYMOUS_CODING nopo DOWNSTREAM CG5721
2L	5462536	2L_5462536_SNP [dm3] 2L_5462536_SNP [dm6]	G	T	1.726e^-4	0.851	INTRON mid	TF binding site BDTNP1_TFBS_dl
2L	9181840	2L_9181840_SNP [dm3] 2L_9181840_SNP [dm6]	G	A	1.739e^-4	0.851	INTRON tai
3R	25565661	3R_25565661_SNP [dm3] 3R_29739939_SNP [dm6]	G	T	1.742e^-4	0.851	START_GAINED CG1969 UTR_5_PRIME CG1969 UPSTREAM CG1969	TF binding site BDTNP1_TFBS_dl
2R	15223296	2R_15223296_SNP [dm3] 2R_19335791_SNP [dm6]	C	A	1.745e^-4	0.851	DOWNSTREAM CG34045 INTRON Rgk1
2R	11111152	2R_11111152_SNP [dm3] 2R_15223647_SNP [dm6]	A	G	1.746e^-4	0.851	UTR_3_PRIME CG8079 & 1 other
2L	8266224	2L_8266224_SNP [dm3] 2L_8266224_SNP [dm6]	A	G	1.756e^-4	0.851	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2L	7450439	2L_7450439_SNP [dm3] 2L_7450439_SNP [dm6]	T	C	1.759e^-4	0.851	UTR_5_PRIME santa-maria INTRON santa-maria
2L	16187576	2L_16187576_SNP [dm3] 2L_16187576_SNP [dm6]	C	A	1.769e^-4	0.851	UTR_3_PRIME Ca-alpha1D INTRON Ca-alpha1D
3R	9922685	3R_9922685_SNP [dm3] 3R_14096963_SNP [dm6]	A	C	1.775e^-4	0.851	UPSTREAM CCHa1 DOWNSTREAM CG9920 INTERGENIC
2L	16097578	2L_16097578_SNP [dm3] 2L_16097578_SNP [dm6]	C	T	1.780e^-4	0.851	INTERGENIC
X	14305376	X_14305376_SNP [dm3] X_14411343_SNP [dm6]	A	G	1.782e^-4	0.851	INTRON dpr8
3R	22024011	3R_22024011_SNP [dm3] 3R_26198289_SNP [dm6]	A	C	1.783e^-4	0.851	INTRON CR44320
3L	7087720	3L_7087720_SNP [dm3] 3L_7094620_SNP [dm6]	G	T	1.785e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	11352976	3L_11352976_SNP [dm3] 3L_11359876_SNP [dm6]	C	A	1.785e^-4	0.851	INTERGENIC
3L	1733868	3L_1733868_SNP [dm3] 3L_1733868_SNP [dm6]	G	A	1.792e^-4	0.851	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1733874	3L_1733874_SNP [dm3] 3L_1733874_SNP [dm6]	G	C	1.792e^-4	0.851	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1733880	3L_1733880_SNP [dm3] 3L_1733880_SNP [dm6]	T	G	1.792e^-4	0.851	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16785331	X_16785331_SNP [dm3] X_16891298_SNP [dm6]	T	C	1.792e^-4	0.851	DOWNSTREAM CG13002 INTERGENIC
3L	1733844	3L_1733844_SNP [dm3] 3L_1733844_SNP [dm6]	A	C	1.799e^-4	0.851	INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11953016	3L_11953016_SNP [dm3] 3L_11959916_SNP [dm6]	A	C	1.804e^-4	0.851	INTRON prc
3L	13898614	3L_13898614_SNP [dm3] 3L_13905514_SNP [dm6]	T	C	1.808e^-4	0.851	INTERGENIC
3R	24377456	3R_24377456_SNP [dm3] 3R_28551734_SNP [dm6]	C	T	1.820e^-4	0.851	INTERGENIC
2L	2846985	2L_2846985_SNP [dm3] 2L_2846985_SNP [dm6]	A	G	1.822e^-4	0.851	UPSTREAM CG2983 INTRON CG3117
2R	6749252	2R_6749252_SNP [dm3] 2R_10861747_SNP [dm6]	T	C	1.825e^-4	0.851	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12242031	3L_12242031_SNP [dm3] 3L_12248931_SNP [dm6]	C	T	1.827e^-4	0.851	INTRON app
2R	18255058	2R_18255058_SNP [dm3] 2R_22367553_SNP [dm6]	A	T	1.828e^-4	0.851	INTRON Liprin-gamma
2L	4958112	2L_4958112_SNP [dm3] 2L_4958112_SNP [dm6]	G	A	1.830e^-4	0.851	SYNONYMOUS_CODING Marcal1 UPSTREAM CG34124
2L	4080568	2L_4080568_INS [dm3] 2L_4080568_INS [dm6]	C	CACACCAGCAAC...	1.830e^-4	0.851	INTRON ed	TF binding site BDTNP1_TFBS_dl
3L	7087640	3L_7087640_SNP [dm3] 3L_7094540_SNP [dm6]	A	T	1.831e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	9553409	2L_9553409_SNP [dm3] 2L_9553409_SNP [dm6]	C	T	1.840e^-4	0.851	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14386551	3L_14386551_SNP [dm3] 3L_14393451_SNP [dm6]	A	T	1.844e^-4	0.851	INTERGENIC
3L	18356256	3L_18356256_SNP [dm3] 3L_18363156_SNP [dm6]	A	T	1.850e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	15307476	3R_15307476_SNP [dm3] 3R_19481754_SNP [dm6]	A	G	1.853e^-4	0.851	INTRON Dys
2L	4629840	2L_4629840_SNP [dm3] 2L_4629840_SNP [dm6]	A	G	1.855e^-4	0.851	INTERGENIC
3L	19458031	3L_19458031_SNP [dm3] 3L_19464931_SNP [dm6]	T	C	1.862e^-4	0.851	UPSTREAM CG14095 INTERGENIC
3L	7853690	3L_7853690_SNP [dm3] 3L_7860590_SNP [dm6]	G	A	1.870e^-4	0.851	INTRON Pdp1
2L	12157657	2L_12157657_SNP [dm3] 2L_12157657_SNP [dm6]	A	C	1.884e^-4	0.851	INTRON CG31760
2R	10564967	2R_10564967_SNP [dm3] 2R_14677462_SNP [dm6]	C	T	1.885e^-4	0.851	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo
2L	7449819	2L_7449819_SNP [dm3] 2L_7449819_SNP [dm6]	A	T	1.885e^-4	0.851	UTR_5_PRIME santa-maria INTRON santa-maria
2L	4629844	2L_4629844_SNP [dm3] 2L_4629844_SNP [dm6]	T	C	1.891e^-4	0.851	INTERGENIC
2L	15084176	2L_15084176_SNP [dm3] 2L_15084176_SNP [dm6]	A	T	1.892e^-4	0.851	INTRON CG15270
3L	7087611	3L_7087611_SNP [dm3] 3L_7094511_SNP [dm6]	G	A	1.901e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
X	20576134	X_20576134_SNP [dm3] X_20705107_SNP [dm6]	G	C	1.941e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	16937202	X_16937202_SNP [dm3] X_17043169_SNP [dm6]	T	A	1.942e^-4	0.851	INTRON CG45002
3R	12037519	3R_12037519_SNP [dm3] 3R_16211797_SNP [dm6]	A	C	1.946e^-4	0.851	INTERGENIC
3L	10496040	3L_10496040_SNP [dm3] 3L_10502940_SNP [dm6]	A	T	1.948e^-4	0.851	INTRON A2bp1
X	5879078	X_5879078_SNP [dm3] X_5985045_SNP [dm6]	T	A	1.949e^-4	0.851	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2258066	2L_2258066_SNP [dm3] 2L_2258066_SNP [dm6]	A	G	1.949e^-4	0.851	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20064985	3R_20064985_SNP [dm3] 3R_24239263_SNP [dm6]	C	A	1.952e^-4	0.851	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12653793	2L_12653793_SNP [dm3] 2L_12653793_SNP [dm6]	A	G	1.952e^-4	0.851	INTERGENIC
2L	9553770	2L_9553770_SNP [dm3] 2L_9553770_SNP [dm6]	T	C	1.956e^-4	0.851	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11953001	3L_11953001_SNP [dm3] 3L_11959901_SNP [dm6]	T	G	1.956e^-4	0.851	DOWNSTREAM CG43294 INTRON prc
2L	7481273	2L_7481273_SNP [dm3] 2L_7481273_SNP [dm6]	T	C	1.966e^-4	0.851	SYNONYMOUS_CODING Ziz
2L	13909742	2L_13909742_SNP [dm3] 2L_13909742_SNP [dm6]	G	A	1.967e^-4	0.851	NON_SYNONYMOUS_CODING Ance-2 DOWNSTREAM Ance	TF binding site mE1_TFBS_cad
2R	10684252	2R_10684252_SNP [dm3] 2R_14796747_SNP [dm6]	C	A	1.969e^-4	0.851	INTRON kn
2L	14011932	2L_14011932_SNP [dm3] 2L_14011932_SNP [dm6]	G	T	1.969e^-4	0.851	INTERGENIC
2R	17783023	2R_17783023_SNP [dm3] 2R_21895518_SNP [dm6]	C	A	1.976e^-4	0.851	INTRON Fili
2L	2257916	2L_2257916_SNP [dm3] 2L_2257916_SNP [dm6]	A	C	1.983e^-4	0.851	EXON CR44787	TF binding site BDTNP1_TFBS_twi
2L	15769074	2L_15769074_SNP [dm3] 2L_15769074_SNP [dm6]	C	T	1.994e^-4	0.851	NON_SYNONYMOUS_CODING Ku80 UPSTREAM wek
2L	12653924	2L_12653924_SNP [dm3] 2L_12653924_SNP [dm6]	A	G	1.994e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10491723	3L_10491723_SNP [dm3] 3L_10498623_SNP [dm6]	G	A	1.995e^-4	0.851	INTRON A2bp1
2R	10394526	2R_10394526_SNP [dm3] 2R_14507021_SNP [dm6]	G	A	1.998e^-4	0.851	SYNONYMOUS_CODING Asx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1954308	3R_1954308_INS [dm3] 3R_6128586_INS [dm6]	C	CATTG	2.005e^-4	0.851	UPSTREAM CR43487 INTERGENIC
2L	12653715	2L_12653715_SNP [dm3] 2L_12653715_SNP [dm6]	T	A	2.008e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9752319	2L_9752319_SNP [dm3] 2L_9752319_SNP [dm6]	A	T	2.009e^-4	0.851	INTERGENIC
2R	6189536	2R_6189536_INS [dm3] 2R_10302031_INS [dm6]	A	ATA	2.011e^-4	0.851	UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3R	23632457	3R_23632457_SNP [dm3] 3R_27806735_SNP [dm6]	A	C	2.012e^-4	0.851	INTRON CG34353
3L	5238268	3L_5238268_SNP [dm3] 3L_5245168_SNP [dm6]	G	T	2.016e^-4	0.851	INTRON shep
3R	21697384	3R_21697384_SNP [dm3] 3R_25871662_SNP [dm6]	A	T	2.025e^-4	0.851	UTR_3_PRIME CG5890
3L	757512	3L_757512_SNP [dm3] 3L_757512_SNP [dm6]	C	A	2.031e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10669943	2L_10669943_SNP [dm3] 2L_10669943_SNP [dm6]	G	A	2.035e^-4	0.851	INTRON CG31871
X	5007599	X_5007599_SNP [dm3] X_5113566_SNP [dm6]	A	T	2.036e^-4	0.851	INTRON rg & 1 other
3L	8682581	3L_8682581_SNP [dm3] 3L_8689481_SNP [dm6]	A	C	2.043e^-4	0.851	INTERGENIC
3R	24377473	3R_24377473_SNP [dm3] 3R_28551751_SNP [dm6]	A	G	2.048e^-4	0.851	INTERGENIC
2L	15768835	2L_15768835_SNP [dm3] 2L_15768835_SNP [dm6]	C	T	2.049e^-4	0.851	SYNONYMOUS_CODING Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl
2R	5384732	2R_5384732_SNP [dm3] 2R_9497227_SNP [dm6]	T	C	2.050e^-4	0.851	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
X	22141779	X_22141779_SNP [dm3] X_22739943_SNP [dm6]	A	T	2.060e^-4	0.851	INTRON CR44997
2R	18641463	2R_18641463_SNP [dm3] 2R_22753958_SNP [dm6]	A	G	2.063e^-4	0.851	INTRON CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18590065	2R_18590065_SNP [dm3] 2R_22702560_SNP [dm6]	T	A	2.070e^-4	0.851	UPSTREAM Obp59a INTRON CG30259
3L	7088751	3L_7088751_SNP [dm3] 3L_7095651_SNP [dm6]	G	T	2.071e^-4	0.851	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	15253775	2R_15253775_SNP [dm3] 2R_19366270_SNP [dm6]	T	C	2.072e^-4	0.851	DOWNSTREAM CG9416 INTRON CG10051
2L	12653820	2L_12653820_SNP [dm3] 2L_12653820_SNP [dm6]	G	T	2.075e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8071581	2L_8071581_SNP [dm3] 2L_8071581_SNP [dm6]	T	A	2.076e^-4	0.851	UTR_5_PRIME poe DOWNSTREAM MED20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4631737	2L_4631737_SNP [dm3] 2L_4631737_SNP [dm6]	T	C	2.078e^-4	0.851	INTERGENIC
2L	4149043	2L_4149043_SNP [dm3] 2L_4149043_SNP [dm6]	C	G	2.079e^-4	0.851	UPSTREAM CG2955 INTERGENIC
3R	24798762	3R_24798762_INS [dm3] 3R_28973040_INS [dm6]	A	ACAATA	2.079e^-4	0.851	DOWNSTREAM CR45669 INTERGENIC
3R	13826367	3R_13826367_DEL [dm3] 3R_18000645_DEL [dm6]	AA	A	2.097e^-4	0.851	INTRON cpo
3R	12141998	3R_12141998_SNP [dm3] 3R_16316276_SNP [dm6]	A	T	2.098e^-4	0.851	INTRON Sulf1
2L	5878477	2L_5878477_SNP [dm3] 2L_5878477_SNP [dm6]	C	G	2.102e^-4	0.851	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16243864	2R_16243864_SNP [dm3] 2R_20356359_SNP [dm6]	T	G	2.104e^-4	0.851	INTERGENIC
2R	15253788	2R_15253788_SNP [dm3] 2R_19366283_SNP [dm6]	G	C	2.106e^-4	0.851	SPLICE_SITE_REGION CG10051 DOWNSTREAM CG9416 INTRON CG10051
3R	11866883	3R_11866883_SNP [dm3] 3R_16041161_SNP [dm6]	C	G	2.113e^-4	0.851	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	16117706	3R_16117706_SNP [dm3] 3R_20291984_SNP [dm6]	C	T	2.126e^-4	0.851	INTRON cic	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	24667205	3R_24667205_SNP [dm3] 3R_28841483_SNP [dm6]	G	A	2.127e^-4	0.851	INTRON Apc	TF binding site BDTNP1_TFBS_twi
3L	1146549	3L_1146549_SNP [dm3] 3L_1146549_SNP [dm6]	T	C	2.130e^-4	0.851	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16243066	2R_16243066_SNP [dm3] 2R_20355561_SNP [dm6]	G	A	2.131e^-4	0.851	UPSTREAM CG11192 INTERGENIC
2L	11380311	2L_11380311_SNP [dm3] 2L_11380311_SNP [dm6]	T	G	2.132e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
3L	10302213	3L_10302213_SNP [dm3] 3L_10309113_SNP [dm6]	G	T	2.137e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15172935	X_15172935_SNP [dm3] X_15278902_SNP [dm6]	A	G	2.138e^-4	0.851	INTERGENIC
X	12379284	X_12379284_SNP [dm3] X_12485251_SNP [dm6]	C	T	2.139e^-4	0.851	INTERGENIC
X	12663721	X_12663721_SNP [dm3] X_12769688_SNP [dm6]	T	C	2.148e^-4	0.851	SPLICE_SITE_REGION CG3812 INTRON CG3812	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6633585	2R_6633585_SNP [dm3] 2R_10746080_SNP [dm6]	A	G	2.158e^-4	0.851	INTRON CG33144	TF binding site mE1_TFBS_HSA
2R	14653701	2R_14653701_SNP [dm3] 2R_18766196_SNP [dm6]	C	G	2.160e^-4	0.851	UPSTREAM Mctp INTRON Mctp
2L	8293628	2L_8293628_SNP [dm3] 2L_8293628_SNP [dm6]	A	T	2.164e^-4	0.851	INTRON Btk29A
2L	15612195	2L_15612195_SNP [dm3] 2L_15612195_SNP [dm6]	C	T	2.166e^-4	0.851	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15981333	3R_15981333_SNP [dm3] 3R_20155611_SNP [dm6]	G	A	2.169e^-4	0.851	INTERGENIC
X	13269215	X_13269215_SNP [dm3] X_13375182_SNP [dm6]	A	G	2.173e^-4	0.851	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26029998	3R_26029998_SNP [dm3] 3R_30204276_SNP [dm6]	A	C	2.176e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	20803899	2L_20803899_SNP [dm3] 2L_20803899_SNP [dm6]	A	G	2.178e^-4	0.851	INTRON CG9328	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5951498	2R_5951498_SNP [dm3] 2R_10063993_SNP [dm6]	G	A	2.179e^-4	0.851	SYNONYMOUS_CODING CG2292 DOWNSTREAM magu
3R	24382747	3R_24382747_SNP [dm3] 3R_28557025_SNP [dm6]	T	C	2.191e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	14375319	2L_14375319_SNP [dm3] 2L_14375319_SNP [dm6]	C	T	2.198e^-4	0.851	INTERGENIC
3L	5895010	3L_5895010_SNP [dm3] 3L_5901910_SNP [dm6]	G	C	2.210e^-4	0.851	SYNONYMOUS_CODING QC DOWNSTREAM CG32409 & 1 other
3L	12702426	3L_12702426_SNP [dm3] 3L_12709326_SNP [dm6]	C	T	2.212e^-4	0.851	UTR_3_PRIME mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19735208	3R_19735208_SNP [dm3] 3R_23909486_SNP [dm6]	G	A	2.218e^-4	0.851	INTRON sba
2L	8365898	2L_8365898_SNP [dm3] 2L_8365898_SNP [dm6]	C	T	2.225e^-4	0.851	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	12543795	3R_12543795_SNP [dm3] 3R_16718073_SNP [dm6]	A	G	2.228e^-4	0.851	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	5373858	3L_5373858_SNP [dm3] 3L_5380758_SNP [dm6]	C	A	2.237e^-4	0.851	INTRON Ir64a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19109862	X_19109862_SNP [dm3] X_19215829_SNP [dm6]	T	C	2.241e^-4	0.851	SYNONYMOUS_CODING Muc18B DOWNSTREAM Mur18B	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11350958	3L_11350958_SNP [dm3] 3L_11357858_SNP [dm6]	C	A	2.246e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17140163	3R_17140163_SNP [dm3] 3R_21314441_SNP [dm6]	A	T	2.247e^-4	0.851	EXON Hsromega
X	13413216	X_13413216_SNP [dm3] X_13519183_SNP [dm6]	T	C	2.256e^-4	0.851	UTR_3_PRIME Neto INTRON Neto
2R	16614134	2R_16614134_SNP [dm3] 2R_20726629_SNP [dm6]	A	C	2.262e^-4	0.851	INTRON dpr
2R	18254954	2R_18254954_SNP [dm3] 2R_22367449_SNP [dm6]	G	T	2.264e^-4	0.851	INTRON Liprin-gamma
X	16037960	X_16037960_SNP [dm3] X_16143927_SNP [dm6]	G	A	2.265e^-4	0.851	INTRON disco-r	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9462245	2R_9462245_SNP [dm3] 2R_13574740_SNP [dm6]	T	G	2.271e^-4	0.851	UPSTREAM CR44365 & 1 other INTERGENIC
3R	11696543	3R_11696543_SNP [dm3] 3R_15870821_SNP [dm6]	G	A	2.278e^-4	0.851	INTRON CG31183
2L	13717622	2L_13717622_SNP [dm3] 2L_13717622_SNP [dm6]	T	C	2.278e^-4	0.851	UPSTREAM CG31814 INTERGENIC
2R	16973867	2R_16973867_SNP [dm3] 2R_21086362_SNP [dm6]	T	A	2.278e^-4	0.851	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9873166	3R_9873166_SNP [dm3] 3R_14047444_SNP [dm6]	C	A	2.281e^-4	0.851	INTERGENIC
3R	13638869	3R_13638869_SNP [dm3] 3R_17813147_SNP [dm6]	A	G	2.281e^-4	0.851	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	12357264	3L_12357264_SNP [dm3] 3L_12364164_SNP [dm6]	A	G	2.292e^-4	0.851	INTERGENIC
3R	26035271	3R_26035271_SNP [dm3] 3R_30209549_SNP [dm6]	C	T	2.294e^-4	0.851	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10349327	2L_10349327_SNP [dm3] 2L_10349327_SNP [dm6]	C	G	2.296e^-4	0.851	INTRON CG34367
X	10624072	X_10624072_SNP [dm3] X_10730039_SNP [dm6]	T	G	2.302e^-4	0.851	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4463989	2L_4463989_SNP [dm3] 2L_4463989_SNP [dm6]	G	T	2.307e^-4	0.851	SYNONYMOUS_CODING CG15436 UPSTREAM CG15443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	24273489	3R_24273489_SNP [dm3] 3R_28447767_SNP [dm6]	G	A	2.307e^-4	0.851	INTRON beat-VI
X	6087464	X_6087464_SNP [dm3] X_6193431_SNP [dm6]	T	A	2.309e^-4	0.851	UPSTREAM Ca-alpha1T INTERGENIC
2L	10510911	2L_10510911_SNP [dm3] 2L_10510911_SNP [dm6]	G	C	2.311e^-4	0.851	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
2R	11003667	2R_11003667_SNP [dm3] 2R_15116162_SNP [dm6]	C	T	2.315e^-4	0.851	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26037044	3R_26037044_SNP [dm3] 3R_30211322_SNP [dm6]	A	G	2.316e^-4	0.851	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM Anp & 1 other INTERGENIC
2R	14653717	2R_14653717_SNP [dm3] 2R_18766212_SNP [dm6]	A	C	2.323e^-4	0.851	UPSTREAM Mctp INTRON Mctp
X	22141798	X_22141798_SNP [dm3] X_22739962_SNP [dm6]	A	G	2.325e^-4	0.851	INTRON CR44997
3L	2121464	3L_2121464_SNP [dm3] 3L_2121464_SNP [dm6]	C	A	2.329e^-4	0.851	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3L	7087077	3L_7087077_SNP [dm3] 3L_7093977_SNP [dm6]	A	T	2.342e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12653814	2L_12653814_SNP [dm3] 2L_12653814_SNP [dm6]	A	T	2.345e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3304354	2R_3304354_SNP [dm3] 2R_7416849_SNP [dm6]	G	C	2.350e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22111998	2L_22111998_SNP [dm3] 2L_22111998_SNP [dm6]	C	G	2.359e^-4	0.851	INTERGENIC	transposable element FlyBase
3R	14175884	3R_14175884_SNP [dm3] 3R_18350162_SNP [dm6]	G	C	2.370e^-4	0.851	INTRON CG15803
3R	2770572	3R_2770572_SNP [dm3] 3R_6944850_SNP [dm6]	T	C	2.370e^-4	0.851	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7086995	3L_7086995_SNP [dm3] 3L_7093895_SNP [dm6]	G	A	2.373e^-4	0.851	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8682628	3L_8682628_SNP [dm3] 3L_8689528_SNP [dm6]	T	G	2.376e^-4	0.851	INTERGENIC
2R	8725047	2R_8725047_SNP [dm3] 2R_12837542_SNP [dm6]	A	G	2.377e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
X	21181801	X_21181801_SNP [dm3] X_21310774_SNP [dm6]	C	T	2.380e^-4	0.851	SYNONYMOUS_CODING CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26890048	3R_26890048_INS [dm3] 3R_31064326_INS [dm6]	C	CCTAGTC	2.385e^-4	0.851	UPSTREAM Sox100B INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16388787	3L_16388787_SNP [dm3] 3L_16395687_SNP [dm6]	C	G	2.389e^-4	0.851	SYNONYMOUS_CODING Grp INTRON CG44836
3L	13898175	3L_13898175_SNP [dm3] 3L_13905075_SNP [dm6]	A	C	2.391e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22142192	X_22142192_SNP [dm3] X_22740356_SNP [dm6]	T	C	2.394e^-4	0.851	INTRON CR44997
2L	15803532	2L_15803532_SNP [dm3] 2L_15803532_SNP [dm6]	C	T	2.400e^-4	0.851	INTERGENIC
2L	17303345	2L_17303345_SNP [dm3] 2L_17303345_SNP [dm6]	T	C	2.406e^-4	0.851	INTERGENIC
2L	21779688	2L_21779688_SNP [dm3] 2L_21779688_SNP [dm6]	C	G	2.422e^-4	0.851	INTRON CG31612
3R	12141913	3R_12141913_SNP [dm3] 3R_16316191_SNP [dm6]	T	C	2.429e^-4	0.851	INTRON Sulf1
2R	18441945	2R_18441945_SNP [dm3] 2R_22554440_SNP [dm6]	A	G	2.435e^-4	0.851	INTRON px
3L	19609966	3L_19609966_SNP [dm3] 3L_19616866_SNP [dm6]	T	C	2.435e^-4	0.851	SYNONYMOUS_CODING l_3_76BDm
X	568903	X_568903_SNP [dm3] X_674870_SNP [dm6]	C	T	2.437e^-4	0.851	INTERGENIC
2L	9675473	2L_9675473_SNP [dm3] 2L_9675473_SNP [dm6]	T	C	2.446e^-4	0.851	INTERGENIC
2R	14411764	2R_14411764_SNP [dm3] 2R_18524259_SNP [dm6]	T	C	2.453e^-4	0.851	SYNONYMOUS_CODING CG43066 UTR_3_PRIME CG43066
2L	3921727	2L_3921727_SNP [dm3] 2L_3921727_SNP [dm6]	C	G	2.453e^-4	0.851	INTRON fred
2L	15768563	2L_15768563_SNP [dm3] 2L_15768563_SNP [dm6]	G	A	2.454e^-4	0.851	UPSTREAM wek DOWNSTREAM Ku80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14370524	3R_14370524_SNP [dm3] 3R_18544802_SNP [dm6]	A	T	2.459e^-4	0.851	INTRON fru
3L	16171416	3L_16171416_SNP [dm3] 3L_16178316_SNP [dm6]	T	A	2.460e^-4	0.851	UPSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16882630	3R_16882630_SNP [dm3] 3R_21056908_SNP [dm6]	G	A	2.461e^-4	0.851	INTRON Mvl
3R	19815257	3R_19815257_SNP [dm3] 3R_23989535_SNP [dm6]	T	C	2.461e^-4	0.851	SYNONYMOUS_CODING CG13604 DOWNSTREAM CG5902
3R	16241656	3R_16241656_SNP [dm3] 3R_20415934_SNP [dm6]	T	A	2.461e^-4	0.851	INTRON Gfrl
2L	8721742	2L_8721742_SNP [dm3] 2L_8721742_SNP [dm6]	G	T	2.462e^-4	0.851	INTRON raw
3L	8565480	3L_8565480_SNP [dm3] 3L_8572380_SNP [dm6]	A	T	2.464e^-4	0.851	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea DOWNSTREAM mir-190	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15756798	2L_15756798_SNP [dm3] 2L_15756798_SNP [dm6]	A	G	2.487e^-4	0.854	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3R	23235878	3R_23235878_SNP [dm3] 3R_27410156_SNP [dm6]	C	T	2.488e^-4	0.854	INTRON side
3R	19769128	3R_19769128_SNP [dm3] 3R_23943406_SNP [dm6]	A	T	2.488e^-4	0.854	UPSTREAM Gdh DOWNSTREAM CG12268 INTERGENIC
2R	6845127	2R_6845127_DEL [dm3] 2R_10957622_DEL [dm6]	TT	T	2.491e^-4	0.854	INTERGENIC
3L	12356382	3L_12356382_SNP [dm3] 3L_12363282_SNP [dm6]	G	A	2.504e^-4	0.855	INTERGENIC
3L	13123363	3L_13123363_SNP [dm3] 3L_13130263_SNP [dm6]	C	A	2.505e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7089850	3L_7089850_SNP [dm3] 3L_7096750_SNP [dm6]	C	A	2.511e^-4	0.855	INTRON form3
2R	17329522	2R_17329522_SNP [dm3] 2R_21442017_SNP [dm6]	C	T	2.515e^-4	0.855	INTRON Sdc
3R	13856065	3R_13856065_SNP [dm3] 3R_18030343_SNP [dm6]	A	G	2.521e^-4	0.855	INTERGENIC
3R	1980250	3R_1980250_DEL [dm3] 3R_6154528_DEL [dm6]	CAAA	TCT	2.524e^-4	0.855	INTRON CG31559
X	21183845	X_21183845_DEL [dm3] X_21312818_DEL [dm6]	GTATTTGTATTTGTATGAGT...	G	2.536e^-4	0.855	SPLICE_SITE_REGION CG1801 INTRON CG1801
2L	15768196	2L_15768196_SNP [dm3] 2L_15768196_SNP [dm6]	A	G	2.537e^-4	0.855	SYNONYMOUS_CODING wek DOWNSTREAM Ku80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	15699886	X_15699886_SNP [dm3] X_15805853_SNP [dm6]	A	G	2.538e^-4	0.855	UTR_5_PRIME sd
3R	11667785	3R_11667785_SNP [dm3] 3R_15842063_SNP [dm6]	T	A	2.539e^-4	0.855	INTRON spn-E
2L	13910359	2L_13910359_SNP [dm3] 2L_13910359_SNP [dm6]	A	T	2.546e^-4	0.856	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8317997	X_8317997_SNP [dm3] X_8423964_SNP [dm6]	G	A	2.550e^-4	0.856	NON_SYNONYMOUS_CODING Trf2 UTR_5_PRIME Trf2
X	19660406	X_19660406_SNP [dm3] X_19766373_SNP [dm6]	T	A	2.564e^-4	0.856	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	13729357	3R_13729357_SNP [dm3] 3R_17903635_SNP [dm6]	T	A	2.569e^-4	0.856	INTRON Rim
2R	17929084	2R_17929084_SNP [dm3] 2R_22041579_SNP [dm6]	A	T	2.576e^-4	0.856	DOWNSTREAM PpD5 INTERGENIC
3R	18720792	3R_18720792_SNP [dm3] 3R_22895070_SNP [dm6]	A	T	2.579e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9553556	2L_9553556_SNP [dm3] 2L_9553556_SNP [dm6]	A	C	2.582e^-4	0.856	INTRON jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24388911	3R_24388911_SNP [dm3] 3R_28563189_SNP [dm6]	G	A	2.584e^-4	0.856	INTERGENIC
3L	16388790	3L_16388790_SNP [dm3] 3L_16395690_SNP [dm6]	A	C	2.585e^-4	0.856	SYNONYMOUS_CODING Grp INTRON CG44836
3R	11583664	3R_11583664_DEL [dm3] 3R_15757942_DEL [dm6]	GCGCCG	G	2.588e^-4	0.856	INTERGENIC
2L	11305278	2L_11305278_SNP [dm3] 2L_11305278_SNP [dm6]	T	A	2.600e^-4	0.857	INTERGENIC
3L	12240676	3L_12240676_SNP [dm3] 3L_12247576_SNP [dm6]	C	T	2.603e^-4	0.857	INTRON app
3R	24379067	3R_24379067_SNP [dm3] 3R_28553345_SNP [dm6]	A	T	2.604e^-4	0.857	INTERGENIC
2L	4708580	2L_4708580_SNP [dm3] 2L_4708580_SNP [dm6]	C	A	2.622e^-4	0.861	INTRON CG34351
2R	14209146	2R_14209146_SNP [dm3] 2R_18321641_SNP [dm6]	G	C	2.624e^-4	0.861	INTRON sbb
3L	8351260	3L_8351260_SNP [dm3] 3L_8358160_SNP [dm6]	G	A	2.630e^-4	0.861	UPSTREAM Idh INTRON Idh
2L	7230586	2L_7230586_SNP [dm3] 2L_7230586_SNP [dm6]	T	G	2.638e^-4	0.861	SYNONYMOUS_CODING Ndae1
3R	9871729	3R_9871729_SNP [dm3] 3R_14046007_SNP [dm6]	A	T	2.652e^-4	0.861	INTERGENIC
2R	19020896	2R_19020896_SNP [dm3] 2R_23133373_SNP [dm6]	G	A	2.653e^-4	0.861	INTERGENIC
2R	6187625	2R_6187625_SNP [dm3] 2R_10300120_SNP [dm6]	G	T	2.654e^-4	0.861	NON_SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7893112	3R_7893112_SNP [dm3] 3R_12067390_SNP [dm6]	A	G	2.663e^-4	0.861	DOWNSTREAM CG14741 INTERGENIC
3R	10154823	3R_10154823_SNP [dm3] 3R_14329101_SNP [dm6]	G	T	2.669e^-4	0.861	SYNONYMOUS_CODING spn-B DOWNSTREAM NK7.1
2R	16600065	2R_16600065_SNP [dm3] 2R_20712560_SNP [dm6]	A	G	2.675e^-4	0.861	INTRON dpr
X	12963602	X_12963602_SNP [dm3] X_13069569_SNP [dm6]	C	A	2.681e^-4	0.861	INTRON rad
3R	15312564	3R_15312564_SNP [dm3] 3R_19486842_SNP [dm6]	T	C	2.684e^-4	0.861	UPSTREAM Dys INTRON Dys
2R	7063515	2R_7063515_SNP [dm3] 2R_11176010_SNP [dm6]	G	A	2.693e^-4	0.861	INTRON shn
3L	7089891	3L_7089891_SNP [dm3] 3L_7096791_SNP [dm6]	C	T	2.696e^-4	0.861	INTRON form3
X	6087472	X_6087472_SNP [dm3] X_6193439_SNP [dm6]	T	A	2.702e^-4	0.861	UPSTREAM Ca-alpha1T INTERGENIC
2R	19350106	2R_19350106_SNP [dm3] 2R_23462583_SNP [dm6]	G	A	2.703e^-4	0.861	INTRON CG43795	TF binding site mE1_TFBS_inv
2R	20156895	2R_20156895_SNP [dm3] 2R_24269372_SNP [dm6]	T	C	2.713e^-4	0.861	UPSTREAM CG13577 INTERGENIC
2R	6640978	2R_6640978_SNP [dm3] 2R_10753473_SNP [dm6]	G	A	2.716e^-4	0.861	INTRON CG33144
2L	10602009	2L_10602009_SNP [dm3] 2L_10602009_SNP [dm6]	C	T	2.723e^-4	0.861	INTRON Trim9
3R	9871722	3R_9871722_DEL [dm3] 3R_14046000_DEL [dm6]	TATG	C	2.726e^-4	0.861	INTERGENIC
2R	19383555	2R_19383555_SNP [dm3] 2R_23496032_SNP [dm6]	A	G	2.732e^-4	0.861	INTERGENIC
2R	18255083	2R_18255083_SNP [dm3] 2R_22367578_SNP [dm6]	T	C	2.733e^-4	0.861	INTRON Liprin-gamma
3R	17555213	3R_17555213_SNP [dm3] 3R_21729491_SNP [dm6]	G	A	2.736e^-4	0.861	DOWNSTREAM CR43096 INTERGENIC
2L	6678711	2L_6678711_SNP [dm3] 2L_6678711_SNP [dm6]	G	A	2.740e^-4	0.861	UTR_3_PRIME Nhe3 DOWNSTREAM Nhe3 INTRON Nhe3	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15756796	2L_15756796_SNP [dm3] 2L_15756796_SNP [dm6]	G	T	2.740e^-4	0.861	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
X	558187	X_558187_SNP [dm3] X_664154_SNP [dm6]	C	T	2.748e^-4	0.861	INTERGENIC
3L	12015499	3L_12015499_SNP [dm3] 3L_12022399_SNP [dm6]	A	G	2.749e^-4	0.861	INTRON rols
3L	18859046	3L_18859046_SNP [dm3] 3L_18865946_SNP [dm6]	G	A	2.752e^-4	0.861	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15794937	3R_15794937_SNP [dm3] 3R_19969215_SNP [dm6]	T	G	2.759e^-4	0.861	INTRON Hs6st
2R	16756270	2R_16756270_SNP [dm3] 2R_20868765_SNP [dm6]	A	G	2.764e^-4	0.861	UTR_3_PRIME IM4 DOWNSTREAM IM4
X	21170240	X_21170240_SNP [dm3] X_21299213_SNP [dm6]	A	G	2.766e^-4	0.861	UPSTREAM mir-2535b INTRON CG1718
3R	10409225	3R_10409225_SNP [dm3] 3R_14583503_SNP [dm6]	C	G	2.768e^-4	0.861	INTRON stumps
2L	4614965	2L_4614965_SNP [dm3] 2L_4614965_SNP [dm6]	C	G	2.769e^-4	0.861	UPSTREAM dp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12241483	3L_12241483_SNP [dm3] 3L_12248383_SNP [dm6]	A	T	2.773e^-4	0.861	INTRON app
3L	9065135	3L_9065135_SNP [dm3] 3L_9072035_SNP [dm6]	C	T	2.779e^-4	0.861	INTRON CG4911	TF binding site BDTNP1_TFBS_dl
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	2.786e^-4	0.861	UPSTREAM PGRP-LA INTRON PGRP-LA
2R	16480396	2R_16480396_SNP [dm3] 2R_20592891_SNP [dm6]	G	A	2.792e^-4	0.861	UPSTREAM bl INTRON bl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17329523	2R_17329523_SNP [dm3] 2R_21442018_SNP [dm6]	G	T	2.801e^-4	0.861	INTRON Sdc
3R	16145697	3R_16145697_SNP [dm3] 3R_20319975_SNP [dm6]	G	A	2.811e^-4	0.861	SYNONYMOUS_CODING CG42668
3L	5238006	3L_5238006_SNP [dm3] 3L_5244906_SNP [dm6]	C	T	2.812e^-4	0.861	INTRON shep
3R	26232086	3R_26232086_SNP [dm3] 3R_30406364_SNP [dm6]	C	G	2.813e^-4	0.861	INTERGENIC
2R	18254949	2R_18254949_SNP [dm3] 2R_22367444_SNP [dm6]	A	G	2.815e^-4	0.861	INTRON Liprin-gamma
2R	18254972	2R_18254972_SNP [dm3] 2R_22367467_SNP [dm6]	C	T	2.815e^-4	0.861	INTRON Liprin-gamma
2L	15755675	2L_15755675_SNP [dm3] 2L_15755675_SNP [dm6]	T	C	2.826e^-4	0.862	UTR_3_PRIME l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	5255570	3L_5255570_INS [dm3] 3L_5262470_INS [dm6]	C	GAGA	2.829e^-4	0.862	INTRON shep
3R	16241707	3R_16241707_SNP [dm3] 3R_20415985_SNP [dm6]	A	G	2.830e^-4	0.862	INTRON Gfrl
2R	10394368	2R_10394368_SNP [dm3] 2R_14506863_SNP [dm6]	G	A	2.850e^-4	0.866	NON_SYNONYMOUS_CODING Asx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13894153	3L_13894153_SNP [dm3] 3L_13901053_SNP [dm6]	A	G	2.868e^-4	0.867	INTRON dysc
3R	3128732	3R_3128732_SNP [dm3] 3R_7303010_SNP [dm6]	A	T	2.870e^-4	0.867	UPSTREAM rn INTRON rn
3R	11992010	3R_11992010_SNP [dm3] 3R_16166288_SNP [dm6]	T	C	2.872e^-4	0.867	INTRON CG6006	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5720052	X_5720052_SNP [dm3] X_5826019_SNP [dm6]	T	C	2.879e^-4	0.867	INTRON CG15765
3L	14385300	3L_14385300_SNP [dm3] 3L_14392200_SNP [dm6]	A	T	2.882e^-4	0.867	INTERGENIC
3R	16882631	3R_16882631_SNP [dm3] 3R_21056909_SNP [dm6]	G	A	2.885e^-4	0.867	INTRON Mvl
3R	14175882	3R_14175882_SNP [dm3] 3R_18350160_SNP [dm6]	A	T	2.889e^-4	0.867	INTRON CG15803
3L	5255441	3L_5255441_SNP [dm3] 3L_5262341_SNP [dm6]	T	G	2.897e^-4	0.867	INTRON shep
2R	18255378	2R_18255378_SNP [dm3] 2R_22367873_SNP [dm6]	A	T	2.898e^-4	0.867	INTRON Liprin-gamma
3L	5238010	3L_5238010_DEL [dm3] 3L_5244910_DEL [dm6]	TGT	T	2.899e^-4	0.867	INTRON shep
3L	13366650	3L_13366650_SNP [dm3] 3L_13373550_SNP [dm6]	G	T	2.907e^-4	0.868	INTERGENIC
3R	17657282	3R_17657282_SNP [dm3] 3R_21831560_SNP [dm6]	C	A	2.921e^-4	0.871	UPSTREAM Gr93a INTERGENIC
2R	1394621	2R_1394621_DEL [dm3] 2R_5507116_DEL [dm6]	CGGCTATTGTTCCTGATAAA...	T	2.924e^-4	0.871	INTRON CG30438 & 1 other	transposable element FlyBase
3R	10730084	3R_10730084_SNP [dm3] 3R_14904362_SNP [dm6]	G	A	2.935e^-4	0.873	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	2107127	3L_2107127_SNP [dm3] 3L_2107127_SNP [dm6]	T	A	2.944e^-4	0.873	INTRON sls
3L	14040662	3L_14040662_SNP [dm3] 3L_14047562_SNP [dm6]	T	A	2.946e^-4	0.873	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18022020	3R_18022020_SNP [dm3] 3R_22196298_SNP [dm6]	A	C	2.951e^-4	0.873	INTRON SKIP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13465807	3L_13465807_SNP [dm3] 3L_13472707_SNP [dm6]	T	C	2.981e^-4	0.877	INTRON CG10089
2L	5841073	2L_5841073_SNP [dm3] 2L_5841073_SNP [dm6]	C	T	2.983e^-4	0.877	INTRON TrissinR
2L	5846663	2L_5846663_SNP [dm3] 2L_5846663_SNP [dm6]	C	T	2.985e^-4	0.877	INTRON TrissinR
2R	14801477	2R_14801477_SNP [dm3] 2R_18913972_SNP [dm6]	C	A	2.997e^-4	0.877	INTRON sano
3R	24154953	3R_24154953_SNP [dm3] 3R_28329231_SNP [dm6]	A	C	3.003e^-4	0.877	UPSTREAM larp INTRON larp
2R	17125021	2R_17125021_SNP [dm3] 2R_21237516_SNP [dm6]	A	C	3.025e^-4	0.877	INTRON ASPP
2L	10086845	2L_10086845_INS [dm3] 2L_10086845_INS [dm6]	T	TGGTGTAAATCTGGCTC...	3.048e^-4	0.877	INTRON CG44153
2R	20396661	2R_20396661_SNP [dm3] 2R_24509138_SNP [dm6]	A	T	3.049e^-4	0.877	DOWNSTREAM Letm1 INTERGENIC
2R	13713600	2R_13713600_SNP [dm3] 2R_17826095_SNP [dm6]	A	G	3.050e^-4	0.877	INTRON grh	transposable element FlyBase
3L	15202553	3L_15202553_SNP [dm3] 3L_15209453_SNP [dm6]	C	T	3.053e^-4	0.877	DOWNSTREAM CG6888 INTERGENIC
2L	15399495	2L_15399495_SNP [dm3] 2L_15399495_SNP [dm6]	G	A	3.075e^-4	0.877	UPSTREAM CR45373 DOWNSTREAM CR44860 & 1 other INTERGENIC
2L	12653684	2L_12653684_SNP [dm3] 2L_12653684_SNP [dm6]	C	T	3.076e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24974810	3R_24974810_SNP [dm3] 3R_29149088_SNP [dm6]	G	A	3.083e^-4	0.877	SYNONYMOUS_CODING Pglym78 UPSTREAM CG11882 DOWNSTREAM ligatin	TF binding site mE1_TFBS_chinmo
2L	16981026	2L_16981026_SNP [dm3] 2L_16981026_SNP [dm6]	G	C	3.090e^-4	0.877	DOWNSTREAM CG44406 INTRON beat-IIIb
2R	11292963	2R_11292963_SNP [dm3] 2R_15405458_SNP [dm6]	G	A	3.098e^-4	0.877	DOWNSTREAM CR45020 INTRON CG43729
3R	13325822	3R_13325822_SNP [dm3] 3R_17500100_SNP [dm6]	C	T	3.098e^-4	0.877	INTRON Dscam3
2L	15773884	2L_15773884_SNP [dm3] 2L_15773884_SNP [dm6]	A	T	3.099e^-4	0.877	UPSTREAM CG31826 INTERGENIC
X	5170257	X_5170257_INS [dm3] X_5276224_INS [dm6]	A	AAAAGTAAACTA...	3.101e^-4	0.877	INTERGENIC
2L	7501244	2L_7501244_SNP [dm3] 2L_7501244_SNP [dm6]	T	A	3.109e^-4	0.877	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
3L	9784766	3L_9784766_SNP [dm3] 3L_9791666_SNP [dm6]	A	G	3.115e^-4	0.877	INTRON Zasp67
2L	7516033	2L_7516033_SNP [dm3] 2L_7516033_SNP [dm6]	G	T	3.116e^-4	0.877	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17655982	2R_17655982_SNP [dm3] 2R_21768477_SNP [dm6]	G	A	3.133e^-4	0.877	INTRON CG30395
3L	10494376	3L_10494376_SNP [dm3] 3L_10501276_SNP [dm6]	C	T	3.135e^-4	0.877	INTRON A2bp1	TF binding site mE1_TFBS_inv
3R	15313347	3R_15313347_DEL [dm3] 3R_19487625_DEL [dm6]	CGATTC	C	3.136e^-4	0.877	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18255068	2R_18255068_SNP [dm3] 2R_22367563_SNP [dm6]	C	A	3.141e^-4	0.877	INTRON Liprin-gamma
2R	18255069	2R_18255069_SNP [dm3] 2R_22367564_SNP [dm6]	G	A	3.141e^-4	0.877	INTRON Liprin-gamma
3L	15030645	3L_15030645_SNP [dm3] 3L_15037545_SNP [dm6]	G	T	3.142e^-4	0.877	INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20528926	2R_20528926_SNP [dm3] 2R_24641403_SNP [dm6]	A	G	3.144e^-4	0.877	SYNONYMOUS_CODING CG4781 DOWNSTREAM CG3640	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	20373301	2L_20373301_SNP [dm3] 2L_20373301_SNP [dm6]	G	A	3.151e^-4	0.877	SYNONYMOUS_CODING Ugt37a1	TF binding site mE1_TFBS_cad
2R	18442169	2R_18442169_SNP [dm3] 2R_22554664_SNP [dm6]	A	G	3.158e^-4	0.877	INTRON px
2R	11920745	2R_11920745_SNP [dm3] 2R_16033240_SNP [dm6]	T	C	3.165e^-4	0.877	INTRON SP2353
3R	24879036	3R_24879036_SNP [dm3] 3R_29053314_SNP [dm6]	C	T	3.170e^-4	0.877	SYNONYMOUS_CODING CG11842	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20390245	2L_20390245_SNP [dm3] 2L_20390245_SNP [dm6]	G	A	3.179e^-4	0.877	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11078207	2R_11078207_SNP [dm3] 2R_15190702_SNP [dm6]	A	T	3.180e^-4	0.877	DOWNSTREAM igl INTERGENIC
3L	9063751	3L_9063751_SNP [dm3] 3L_9070651_SNP [dm6]	A	C	3.182e^-4	0.877	INTRON CG4911
3R	14456978	3R_14456978_SNP [dm3] 3R_18631256_SNP [dm6]	G	A	3.185e^-4	0.877	INTRON qin & 1 other
2R	9462159	2R_9462159_SNP [dm3] 2R_13574654_SNP [dm6]	A	G	3.192e^-4	0.877	UPSTREAM CR44365 & 1 other INTERGENIC
2L	4708366	2L_4708366_SNP [dm3] 2L_4708366_SNP [dm6]	T	A	3.193e^-4	0.877	INTRON CG34351
2L	952580	2L_952580_SNP [dm3] 2L_952580_SNP [dm6]	C	T	3.196e^-4	0.877	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14245521	2R_14245521_SNP [dm3] 2R_18358016_SNP [dm6]	A	C	3.197e^-4	0.877	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15946830	2L_15946830_SNP [dm3] 2L_15946830_SNP [dm6]	G	C	3.198e^-4	0.877	INTRON beat-Ib
X	8079294	X_8079294_SNP [dm3] X_8185261_SNP [dm6]	A	C	3.203e^-4	0.877	INTRON sdt
2L	11175976	2L_11175976_SNP [dm3] 2L_11175976_SNP [dm6]	A	G	3.204e^-4	0.877	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
3R	14103666	3R_14103666_SNP [dm3] 3R_18277944_SNP [dm6]	T	A	3.207e^-4	0.877	DOWNSTREAM CG7142 INTRON eIF-1A
2R	16903587	2R_16903587_SNP [dm3] 2R_21016082_SNP [dm6]	C	A	3.214e^-4	0.877	SYNONYMOUS_CODING CG3295 DOWNSTREAM CG9346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7149588	2R_7149588_SNP [dm3] 2R_11262083_SNP [dm6]	G	C	3.214e^-4	0.877	UPSTREAM Cpr47Ed INTERGENIC
3L	7087066	3L_7087066_SNP [dm3] 3L_7093966_SNP [dm6]	A	T	3.218e^-4	0.877	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15653356	X_15653356_SNP [dm3] X_15759323_SNP [dm6]	C	A	3.223e^-4	0.877	INTRON Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	8351244	3L_8351244_SNP [dm3] 3L_8358144_SNP [dm6]	A	G	3.229e^-4	0.877	UPSTREAM Idh INTRON Idh
2R	18498535	2R_18498535_SNP [dm3] 2R_22611030_SNP [dm6]	G	T	3.231e^-4	0.877	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	4263472	X_4263472_SNP [dm3] X_4369439_SNP [dm6]	C	G	3.235e^-4	0.877	UPSTREAM mir-983-2 & 1 other INTRON CR43614 & 1 other
2R	11004262	2R_11004262_SNP [dm3] 2R_15116757_SNP [dm6]	C	A	3.235e^-4	0.877	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	1733842	3L_1733842_SNP [dm3] 3L_1733842_SNP [dm6]	A	G	3.237e^-4	0.877	INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1733845	3L_1733845_SNP [dm3] 3L_1733845_SNP [dm6]	A	C	3.237e^-4	0.877	INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14970576	2L_14970576_SNP [dm3] 2L_14970576_SNP [dm6]	C	A	3.240e^-4	0.877	INTRON CG42313
X	18996392	X_18996392_INS [dm3] X_19102359_INS [dm6]	A	ATACACCCACA...	3.240e^-4	0.877	INTERGENIC
X	4712786	X_4712786_DEL [dm3] X_4818753_DEL [dm6]	TGTT	T	3.245e^-4	0.877	INTERGENIC
2R	9854478	2R_9854478_SNP [dm3] 2R_13966973_SNP [dm6]	A	T	3.249e^-4	0.877	SPLICE_SITE_REGION Cp1 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21091206	X_21091206_SNP [dm3] X_21220179_SNP [dm6]	G	A	3.250e^-4	0.877	INTRON CG32521
2R	17933915	2R_17933915_SNP [dm3] 2R_22046410_SNP [dm6]	C	A	3.260e^-4	0.877	INTERGENIC
3L	13898186	3L_13898186_SNP [dm3] 3L_13905086_SNP [dm6]	C	T	3.261e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7576397	2L_7576397_SNP [dm3] 2L_7576397_SNP [dm6]	G	A	3.267e^-4	0.877	START_GAINED RapGAP1 UTR_5_PRIME RapGAP1 UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7094020	3L_7094020_SNP [dm3] 3L_7100920_SNP [dm6]	T	G	3.268e^-4	0.877	INTRON form3
X	4261427	X_4261427_SNP [dm3] X_4367394_SNP [dm6]	T	C	3.268e^-4	0.877	SYNONYMOUS_CODING CG3626 DOWNSTREAM mir-983-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	16115801	3R_16115801_SNP [dm3] 3R_20290079_SNP [dm6]	C	T	3.268e^-4	0.877	SYNONYMOUS_CODING cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	15774174	3L_15774174_SNP [dm3] 3L_15781074_SNP [dm6]	G	T	3.288e^-4	0.88	INTERGENIC
3L	12404522	3L_12404522_SNP [dm3] 3L_12411422_SNP [dm6]	G	T	3.288e^-4	0.88	INTRON CG32103
2R	6195367	2R_6195367_SNP [dm3] 2R_10307862_SNP [dm6]	G	A	3.293e^-4	0.88	SYNONYMOUS_CODING JhI-1 DOWNSTREAM CAP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10409250	3R_10409250_SNP [dm3] 3R_14583528_SNP [dm6]	T	C	3.301e^-4	0.88	INTRON stumps
2R	14245800	2R_14245800_SNP [dm3] 2R_18358295_SNP [dm6]	G	A	3.304e^-4	0.88	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11220761	2R_11220761_SNP [dm3] 2R_15333256_SNP [dm6]	T	C	3.328e^-4	0.884	INTRON Hr51
3R	8048859	3R_8048859_SNP [dm3] 3R_12223137_SNP [dm6]	G	A	3.336e^-4	0.884	SYNONYMOUS_CODING CG10014 DOWNSTREAM CG17404
2R	14245767	2R_14245767_SNP [dm3] 2R_18358262_SNP [dm6]	T	A	3.350e^-4	0.884	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15096799	2R_15096799_SNP [dm3] 2R_19209294_SNP [dm6]	C	G	3.358e^-4	0.884	INTRON hppy
3L	10533620	3L_10533620_SNP [dm3] 3L_10540520_SNP [dm6]	T	A	3.366e^-4	0.884	INTRON A2bp1
2R	14995432	2R_14995432_SNP [dm3] 2R_19107927_SNP [dm6]	G	A	3.376e^-4	0.884	INTRON 5-HT1A
2L	5912535	2L_5912535_SNP [dm3] 2L_5912535_SNP [dm6]	A	G	3.404e^-4	0.884	SYNONYMOUS_CODING bchs
3L	18824828	3L_18824828_SNP [dm3] 3L_18831728_SNP [dm6]	T	A	3.407e^-4	0.884	INTRON Indy
2R	9853461	2R_9853461_SNP [dm3] 2R_13965956_SNP [dm6]	G	C	3.411e^-4	0.884	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21181822	X_21181822_SNP [dm3] X_21310795_SNP [dm6]	G	C	3.416e^-4	0.884	SYNONYMOUS_CODING CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21583862	2L_21583862_SNP [dm3] 2L_21583862_SNP [dm6]	T	A	3.418e^-4	0.884	INTRON nompB
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.422e^-4	0.884	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1917256	2L_1917256_SNP [dm3] 2L_1917256_SNP [dm6]	G	A	3.427e^-4	0.884	INTRON CG7337
X	16793163	X_16793163_INS [dm3] X_16899130_INS [dm6]	T	TCT	3.429e^-4	0.884	INTERGENIC
2R	14244998	2R_14244998_SNP [dm3] 2R_18357493_SNP [dm6]	G	A	3.436e^-4	0.884	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13910595	2L_13910595_SNP [dm3] 2L_13910595_SNP [dm6]	T	C	3.442e^-4	0.884	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2L	7449852	2L_7449852_SNP [dm3] 2L_7449852_SNP [dm6]	T	C	3.446e^-4	0.884	UTR_5_PRIME santa-maria INTRON santa-maria
3R	20906779	3R_20906779_SNP [dm3] 3R_25081057_SNP [dm6]	T	C	3.454e^-4	0.884	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2310251	2L_2310251_SNP [dm3] 2L_2310251_SNP [dm6]	A	G	3.455e^-4	0.884	SYNONYMOUS_CODING CG9967
2R	16954597	2R_16954597_SNP [dm3] 2R_21067092_SNP [dm6]	A	C	3.458e^-4	0.884	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16854388	2R_16854388_SNP [dm3] 2R_20966883_SNP [dm6]	A	G	3.460e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19597488	2L_19597488_SNP [dm3] 2L_19597488_SNP [dm6]	C	T	3.466e^-4	0.884	INTRON Lar
3L	8367963	3L_8367963_SNP [dm3] 3L_8374863_SNP [dm6]	A	G	3.466e^-4	0.884	UTR_5_PRIME ImpE1
X	19521992	X_19521992_SNP [dm3] X_19627959_SNP [dm6]	C	T	3.467e^-4	0.884	UTR_3_PRIME e_y_3 DOWNSTREAM e_y_3	TF binding site BDTNP1_TFBS_dl
3L	3407194	3L_3407194_SNP [dm3] 3L_3407194_SNP [dm6]	G	A	3.474e^-4	0.884	INTRON sty
2R	16066286	2R_16066286_SNP [dm3] 2R_20178781_SNP [dm6]	A	G	3.475e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	3.486e^-4	0.884	UPSTREAM CG17292 INTRON CG17292
3L	12524259	3L_12524259_SNP [dm3] 3L_12531159_SNP [dm6]	A	G	3.491e^-4	0.884	SYNONYMOUS_CODING Tsf2 UPSTREAM nst	TF binding site mE1_TFBS_sens
3R	8029807	3R_8029807_SNP [dm3] 3R_12204085_SNP [dm6]	A	G	3.498e^-4	0.884	INTERGENIC
3L	7087857	3L_7087857_DEL [dm3] 3L_7094757_DEL [dm6]	CGT	C	3.507e^-4	0.884	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3R	23538518	3R_23538518_SNP [dm3] 3R_27712796_SNP [dm6]	A	G	3.512e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9069821	3L_9069821_SNP [dm3] 3L_9076721_SNP [dm6]	G	A	3.514e^-4	0.884	NON_SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_HSA
3R	18212190	3R_18212190_SNP [dm3] 3R_22386468_SNP [dm6]	C	A	3.515e^-4	0.884	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
3L	7082699	3L_7082699_SNP [dm3] 3L_7089599_SNP [dm6]	G	T	3.520e^-4	0.884	UPSTREAM Cpr65Eb INTERGENIC
2L	10071448	2L_10071448_SNP [dm3] 2L_10071448_SNP [dm6]	A	C	3.528e^-4	0.884	INTRON CG44153
X	14059101	X_14059101_SNP [dm3] X_14165068_SNP [dm6]	G	C	3.533e^-4	0.884	INTERGENIC
2R	14993643	2R_14993643_SNP [dm3] 2R_19106138_SNP [dm6]	G	T	3.534e^-4	0.884	INTRON 5-HT1A
3R	12978516	3R_12978516_SNP [dm3] 3R_17152794_SNP [dm6]	C	A	3.539e^-4	0.884	UTR_3_PRIME CG5292 DOWNSTREAM Mur89F
3R	14176038	3R_14176038_SNP [dm3] 3R_18350316_SNP [dm6]	T	C	3.539e^-4	0.884	INTRON CG15803
3R	24377949	3R_24377949_SNP [dm3] 3R_28552227_SNP [dm6]	T	A	3.553e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7230622	2L_7230622_SNP [dm3] 2L_7230622_SNP [dm6]	A	T	3.557e^-4	0.884	INTRON Ndae1
3R	4566724	3R_4566724_SNP [dm3] 3R_8741002_SNP [dm6]	G	A	3.560e^-4	0.884	INTRON CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24377642	3R_24377642_SNP [dm3] 3R_28551920_SNP [dm6]	C	T	3.565e^-4	0.884	INTERGENIC
2L	6696213	2L_6696213_SNP [dm3] 2L_6696213_SNP [dm6]	T	G	3.567e^-4	0.884	INTRON Tsp
2L	13911175	2L_13911175_SNP [dm3] 2L_13911175_SNP [dm6]	A	T	3.578e^-4	0.884	NON_SYNONYMOUS_CODING Ance-2 UPSTREAM Acyp	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	2999173	2L_2999173_SNP [dm3] 2L_2999173_SNP [dm6]	G	A	3.579e^-4	0.884	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
3R	14961906	3R_14961906_SNP [dm3] 3R_19136184_SNP [dm6]	T	C	3.580e^-4	0.884	NON_SYNONYMOUS_CODING Cyp12a4	TF binding site mE1_TFBS_cad
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	3.582e^-4	0.884	INTERGENIC
2R	11203004	2R_11203004_SNP [dm3] 2R_15315499_SNP [dm6]	T	C	3.583e^-4	0.884	NON_SYNONYMOUS_CODING mus210
2L	7875549	2L_7875549_SNP [dm3] 2L_7875549_SNP [dm6]	A	T	3.599e^-4	0.884	INTRON spz3	TF binding site mE1_TFBS_inv
2L	7488843	2L_7488843_SNP [dm3] 2L_7488843_SNP [dm6]	T	A	3.602e^-4	0.884	INTRON Ziz
2L	16097533	2L_16097533_SNP [dm3] 2L_16097533_SNP [dm6]	T	A	3.603e^-4	0.884	INTERGENIC
3R	10131919	3R_10131919_SNP [dm3] 3R_14306197_SNP [dm6]	G	A	3.606e^-4	0.884	SYNONYMOUS_CODING su_Hw_
2L	7780746	2L_7780746_SNP [dm3] 2L_7780746_SNP [dm6]	C	T	3.617e^-4	0.884	UPSTREAM CG7164 INTRON Uro
2L	8721788	2L_8721788_SNP [dm3] 2L_8721788_SNP [dm6]	G	A	3.637e^-4	0.884	INTRON raw
3R	13070476	3R_13070476_SNP [dm3] 3R_17244754_SNP [dm6]	T	C	3.638e^-4	0.884	INTRON beat-IIb
2L	14335425	2L_14335425_SNP [dm3] 2L_14335425_SNP [dm6]	A	T	3.643e^-4	0.884	INTRON CG33090
2L	14335426	2L_14335426_DEL [dm3] 2L_14335426_DEL [dm6]	GT	G	3.643e^-4	0.884	INTRON CG33090
2L	14335432	2L_14335432_SNP [dm3] 2L_14335432_SNP [dm6]	T	C	3.643e^-4	0.884	INTRON CG33090
2L	14335434	2L_14335434_INS [dm3] 2L_14335434_INS [dm6]	A	ATA	3.643e^-4	0.884	INTRON CG33090
2L	4074467	2L_4074467_SNP [dm3] 2L_4074467_SNP [dm6]	T	C	3.649e^-4	0.884	INTRON ed EXON CR44984
X	12538830	X_12538830_SNP [dm3] X_12644797_SNP [dm6]	C	A	3.652e^-4	0.884	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18902691	X_18902691_SNP [dm3] X_19008658_SNP [dm6]	T	C	3.653e^-4	0.884	INTRON CG43759
2R	3749025	2R_3749025_SNP [dm3] 2R_7861520_SNP [dm6]	C	T	3.655e^-4	0.884	INTRON Dgk
2L	11182883	2L_11182883_SNP [dm3] 2L_11182883_SNP [dm6]	C	A	3.668e^-4	0.884	INTRON Ca-beta
2L	4279067	2L_4279067_SNP [dm3] 2L_4279067_SNP [dm6]	T	G	3.668e^-4	0.884	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14058971	X_14058971_SNP [dm3] X_14164938_SNP [dm6]	C	G	3.668e^-4	0.884	INTERGENIC
2L	4530573	2L_4530573_SNP [dm3] 2L_4530573_SNP [dm6]	C	T	3.669e^-4	0.884	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad
2L	7630548	2L_7630548_DEL [dm3] 2L_7630548_DEL [dm6]	GG	G	3.674e^-4	0.884	INTERGENIC
3R	12939374	3R_12939374_SNP [dm3] 3R_17113652_SNP [dm6]	G	A	3.677e^-4	0.884	INTRON cher
2L	8355473	2L_8355473_SNP [dm3] 2L_8355473_SNP [dm6]	T	C	3.682e^-4	0.884	DOWNSTREAM CG7627 & 1 other INTERGENIC
2L	7780706	2L_7780706_SNP [dm3] 2L_7780706_SNP [dm6]	A	T	3.686e^-4	0.884	UPSTREAM CG7164 INTRON Uro
2R	14966212	2R_14966212_SNP [dm3] 2R_19078707_SNP [dm6]	T	A	3.686e^-4	0.884	INTRON 5-HT1A
3L	14713230	3L_14713230_DEL [dm3] 3L_14720130_DEL [dm6]	ACTTATA	A	3.686e^-4	0.884	INTRON ome
3R	14939862	3R_14939862_SNP [dm3] 3R_19114140_SNP [dm6]	T	C	3.689e^-4	0.884	INTRON CG6040	transposable element FlyBase
3L	8812202	3L_8812202_SNP [dm3] 3L_8819102_SNP [dm6]	G	A	3.690e^-4	0.884	INTERGENIC
3L	11350731	3L_11350731_SNP [dm3] 3L_11357631_SNP [dm6]	A	T	3.690e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	16718620	X_16718620_SNP [dm3] X_16824587_SNP [dm6]	G	A	3.690e^-4	0.884	SYNONYMOUS_CODING CG4829	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16527943	3L_16527943_SNP [dm3] 3L_16534843_SNP [dm6]	A	T	3.692e^-4	0.884	INTRON CG43373	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11849043	3L_11849043_SNP [dm3] 3L_11855943_SNP [dm6]	C	T	3.699e^-4	0.885	INTRON CG44837
2L	3958366	2L_3958366_SNP [dm3] 2L_3958366_SNP [dm6]	T	C	3.703e^-4	0.885	INTRON fred
2R	14243438	2R_14243438_DEL [dm3] 2R_18355933_DEL [dm6]	TT	T	3.715e^-4	0.885	UTR_5_PRIME sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1494378	2L_1494378_SNP [dm3] 2L_1494378_SNP [dm6]	T	A	3.717e^-4	0.885	NON_SYNONYMOUS_CODING CG33128 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16183075	2L_16183075_SNP [dm3] 2L_16183075_SNP [dm6]	T	G	3.724e^-4	0.885	INTRON Ca-alpha1D
2L	2258076	2L_2258076_SNP [dm3] 2L_2258076_SNP [dm6]	C	A	3.726e^-4	0.885	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9392919	2R_9392919_SNP [dm3] 2R_13505414_SNP [dm6]	C	T	3.737e^-4	0.885	SYNONYMOUS_CODING mars	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8079314	X_8079314_DEL [dm3] X_8185281_DEL [dm6]	TAC	T	3.742e^-4	0.885	INTRON sdt
3R	24404493	3R_24404493_SNP [dm3] 3R_28578771_SNP [dm6]	T	C	3.747e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
2L	16097590	2L_16097590_SNP [dm3] 2L_16097590_SNP [dm6]	G	T	3.749e^-4	0.885	INTERGENIC
3R	14939858	3R_14939858_SNP [dm3] 3R_19114136_SNP [dm6]	C	G	3.758e^-4	0.885	INTRON CG6040	transposable element FlyBase
2L	2257994	2L_2257994_SNP [dm3] 2L_2257994_SNP [dm6]	G	A	3.758e^-4	0.885	EXON CR44787	TF binding site BDTNP1_TFBS_twi
X	2433517	X_2433517_SNP [dm3] X_2539484_SNP [dm6]	C	T	3.760e^-4	0.885	INTRON trol
3R	24082778	3R_24082778_SNP [dm3] 3R_28257056_SNP [dm6]	C	A	3.762e^-4	0.885	INTERGENIC
3R	3127195	3R_3127195_SNP [dm3] 3R_7301473_SNP [dm6]	T	C	3.764e^-4	0.885	INTRON rn
3L	13898168	3L_13898168_INS [dm3] 3L_13905068_INS [dm6]	A	AAATTA	3.775e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19701598	2R_19701598_SNP [dm3] 2R_23814075_SNP [dm6]	G	A	3.786e^-4	0.887	INTRON CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
X	21170373	X_21170373_SNP [dm3] X_21299346_SNP [dm6]	A	C	3.797e^-4	0.887	INTRON CG1718
3L	8351255	3L_8351255_SNP [dm3] 3L_8358155_SNP [dm6]	A	C	3.802e^-4	0.887	UPSTREAM Idh INTRON Idh
2L	2257970	2L_2257970_SNP [dm3] 2L_2257970_SNP [dm6]	A	G	3.805e^-4	0.887	EXON CR44787	TF binding site BDTNP1_TFBS_twi
3R	23548177	3R_23548177_SNP [dm3] 3R_27722455_SNP [dm6]	T	G	3.806e^-4	0.887	INTERGENIC
2R	16979654	2R_16979654_SNP [dm3] 2R_21092149_SNP [dm6]	G	T	3.807e^-4	0.887	UPSTREAM CG34396 INTERGENIC
3L	14938542	3L_14938542_SNP [dm3] 3L_14945442_SNP [dm6]	A	C	3.810e^-4	0.887	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	26035243	3R_26035243_SNP [dm3] 3R_30209521_SNP [dm6]	A	G	3.819e^-4	0.888	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9921865	3R_9921865_SNP [dm3] 3R_14096143_SNP [dm6]	G	A	3.838e^-4	0.889	INTRON CCHa1
2L	7449811	2L_7449811_SNP [dm3] 2L_7449811_SNP [dm6]	A	G	3.839e^-4	0.889	UTR_5_PRIME santa-maria INTRON santa-maria
2L	4708575	2L_4708575_SNP [dm3] 2L_4708575_SNP [dm6]	G	C	3.842e^-4	0.889	INTRON CG34351
3R	24404560	3R_24404560_SNP [dm3] 3R_28578838_SNP [dm6]	C	G	3.843e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs
2R	13641787	2R_13641787_SNP [dm3] 2R_17754282_SNP [dm6]	C	T	3.853e^-4	0.89	NON_SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14583416	3L_14583416_SNP [dm3] 3L_14590316_SNP [dm6]	T	C	3.871e^-4	0.893	INTRON HGTX
3L	755815	3L_755815_DEL [dm3] 3L_755815_DEL [dm6]	AA	A	3.876e^-4	0.893	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12546743	3R_12546743_SNP [dm3] 3R_16721021_SNP [dm6]	T	C	3.893e^-4	0.896	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	15261633	X_15261633_SNP [dm3] X_15367600_SNP [dm6]	A	T	3.908e^-4	0.897	INTRON acj6
3L	16388812	3L_16388812_SNP [dm3] 3L_16395712_SNP [dm6]	T	C	3.915e^-4	0.897	SYNONYMOUS_CODING Grp INTRON CG44836
X	7816167	X_7816167_SNP [dm3] X_7922134_SNP [dm6]	C	G	3.916e^-4	0.897	DOWNSTREAM CG10777 & 1 other INTERGENIC
3L	13898750	3L_13898750_SNP [dm3] 3L_13905650_SNP [dm6]	C	G	3.917e^-4	0.897	INTERGENIC
2L	3962171	2L_3962171_SNP [dm3] 2L_3962171_SNP [dm6]	G	A	3.923e^-4	0.897	INTRON fred
3L	971367	3L_971367_SNP [dm3] 3L_971367_SNP [dm6]	A	G	3.928e^-4	0.897	INTRON Glut1
2L	4570384	2L_4570384_INS [dm3] 2L_4570384_INS [dm6]	C	CTATC	3.934e^-4	0.897	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15794938	3R_15794938_INS [dm3] 3R_19969216_INS [dm6]	A	AC	3.938e^-4	0.897	INTRON Hs6st
X	8496048	X_8496048_SNP [dm3] X_8602015_SNP [dm6]	A	G	3.939e^-4	0.897	UTR_3_PRIME Crag DOWNSTREAM Caf1-180 & 1 other
2L	14754481	2L_14754481_SNP [dm3] 2L_14754481_SNP [dm6]	G	T	3.951e^-4	0.898	INTERGENIC
2L	9540478	2L_9540478_SNP [dm3] 2L_9540478_SNP [dm6]	C	T	3.963e^-4	0.9	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14702456	2L_14702456_SNP [dm3] 2L_14702456_SNP [dm6]	A	T	3.966e^-4	0.9	INTERGENIC
X	16921733	X_16921733_DEL [dm3] X_17027700_DEL [dm6]	AAA	A	3.980e^-4	0.902	INTRON CG45002
2R	1088370	2R_1088370_SNP [dm3] 2R_5200865_SNP [dm6]	C	G	3.991e^-4	0.902	INTRON Nipped-A
2L	4631806	2L_4631806_SNP [dm3] 2L_4631806_SNP [dm6]	G	A	4.002e^-4	0.902	INTERGENIC
3L	1391522	3L_1391522_SNP [dm3] 3L_1391522_SNP [dm6]	C	T	4.005e^-4	0.902	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9930900	2L_9930900_SNP [dm3] 2L_9930900_SNP [dm6]	C	T	4.010e^-4	0.902	SYNONYMOUS_CODING CG42367 DOWNSTREAM CG42366	TF binding site mE1_TFBS_HSA
3L	12838589	3L_12838589_SNP [dm3] 3L_12845489_SNP [dm6]	C	T	4.011e^-4	0.902	SYNONYMOUS_CODING CG10948 UTR_3_PRIME CG10948
3R	13980983	3R_13980983_SNP [dm3] 3R_18155261_SNP [dm6]	T	G	4.013e^-4	0.902	INTERGENIC
2L	9553572	2L_9553572_SNP [dm3] 2L_9553572_SNP [dm6]	A	T	4.025e^-4	0.903	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9845652	2L_9845652_SNP [dm3] 2L_9845652_SNP [dm6]	A	G	4.033e^-4	0.903	INTRON nAChRalpha6
2L	3959926	2L_3959926_SNP [dm3] 2L_3959926_SNP [dm6]	A	C	4.034e^-4	0.903	INTRON fred
2L	3756098	2L_3756098_DEL [dm3] 2L_3756098_DEL [dm6]	AATT	A	4.039e^-4	0.903	INTERGENIC
2L	14697331	2L_14697331_SNP [dm3] 2L_14697331_SNP [dm6]	G	T	4.045e^-4	0.903	INTERGENIC
2L	7780752	2L_7780752_SNP [dm3] 2L_7780752_SNP [dm6]	C	A	4.049e^-4	0.903	UPSTREAM CG7164 INTRON Uro
3L	16388805	3L_16388805_SNP [dm3] 3L_16395705_SNP [dm6]	T	C	4.050e^-4	0.903	SYNONYMOUS_CODING Grp INTRON CG44836
2L	4904688	2L_4904688_SNP [dm3] 2L_4904688_SNP [dm6]	G	A	4.052e^-4	0.903	SYNONYMOUS_CODING CG2837 DOWNSTREAM CG3036	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14245023	2R_14245023_SNP [dm3] 2R_18357518_SNP [dm6]	G	T	4.059e^-4	0.903	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	8040168	3R_8040168_SNP [dm3] 3R_12214446_SNP [dm6]	G	A	4.074e^-4	0.904	UTR_3_PRIME CG4848 UPSTREAM CG14742
2L	4549332	2L_4549332_SNP [dm3] 2L_4549332_SNP [dm6]	C	T	4.076e^-4	0.904	INTRON dp
2L	18937795	2L_18937795_SNP [dm3] 2L_18937795_SNP [dm6]	G	A	4.076e^-4	0.904	INTRON ssp3
3R	23815262	3R_23815262_SNP [dm3] 3R_27989540_SNP [dm6]	C	T	4.092e^-4	0.906	DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	20577244	3L_20577244_SNP [dm3] 3L_20584144_SNP [dm6]	T	C	4.118e^-4	0.91	INTERGENIC
2L	15768432	2L_15768432_SNP [dm3] 2L_15768432_SNP [dm6]	T	A	4.122e^-4	0.91	UPSTREAM wek DOWNSTREAM Ku80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11344716	2L_11344716_SNP [dm3] 2L_11344716_SNP [dm6]	C	A	4.129e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13115952	3R_13115952_SNP [dm3] 3R_17290230_SNP [dm6]	A	C	4.130e^-4	0.91	INTERGENIC
X	13573678	X_13573678_SNP [dm3] X_13679645_SNP [dm6]	C	T	4.132e^-4	0.91	INTRON CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14680520	2R_14680520_SNP [dm3] 2R_18793015_SNP [dm6]	G	A	4.140e^-4	0.91	SYNONYMOUS_CODING CG15080
2R	13289707	2R_13289707_INS [dm3] 2R_17402202_INS [dm6]	GC	AAA	4.143e^-4	0.91	INTRON Sip1
3R	9871731	3R_9871731_DEL [dm3] 3R_14046009_DEL [dm6]	GGAA	C	4.151e^-4	0.91	INTERGENIC
2R	6641075	2R_6641075_SNP [dm3] 2R_10753570_SNP [dm6]	A	G	4.156e^-4	0.91	INTRON CG33144
2L	16319523	2L_16319523_SNP [dm3] 2L_16319523_SNP [dm6]	G	T	4.156e^-4	0.91	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	5493986	X_5493986_SNP [dm3] X_5599953_SNP [dm6]	C	T	4.174e^-4	0.912	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21037446	3R_21037446_SNP [dm3] 3R_25211724_SNP [dm6]	C	A	4.201e^-4	0.913	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad
X	5864559	X_5864559_SNP [dm3] X_5970526_SNP [dm6]	T	C	4.209e^-4	0.913	INTRON Grip	TF binding site BDTNP1_TFBS_da
3R	12547104	3R_12547104_DEL [dm3] 3R_16721382_DEL [dm6]	CTATTC	C	4.210e^-4	0.913	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	20186839	3L_20186839_SNP [dm3] 3L_20193739_SNP [dm6]	G	A	4.220e^-4	0.913	INTRON CG42674
2L	18924529	2L_18924529_SNP [dm3] 2L_18924529_SNP [dm6]	A	G	4.232e^-4	0.913	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3900081	2R_3900081_SNP [dm3] 2R_8012576_SNP [dm6]	C	A	4.235e^-4	0.913	SYNONYMOUS_CODING CG14762	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19127429	2R_19127429_SNP [dm3] 2R_23239906_SNP [dm6]	G	A	4.237e^-4	0.913	INTERGENIC
3L	9302561	3L_9302561_SNP [dm3] 3L_9309461_SNP [dm6]	T	A	4.241e^-4	0.913	INTERGENIC
2L	4206405	2L_4206405_SNP [dm3] 2L_4206405_SNP [dm6]	A	C	4.249e^-4	0.913	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11359626	3L_11359626_SNP [dm3] 3L_11366526_SNP [dm6]	A	T	4.273e^-4	0.913	DOWNSTREAM CR45036 INTERGENIC	TF binding site mE1_TFBS_inv
3R	1950759	3R_1950759_SNP [dm3] 3R_6125037_SNP [dm6]	A	G	4.275e^-4	0.913	DOWNSTREAM Vha14-2 INTERGENIC
3L	7087380	3L_7087380_SNP [dm3] 3L_7094280_SNP [dm6]	A	G	4.276e^-4	0.913	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3R	23537596	3R_23537596_SNP [dm3] 3R_27711874_SNP [dm6]	C	A	4.284e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8147427	3R_8147427_SNP [dm3] 3R_12321705_SNP [dm6]	G	T	4.287e^-4	0.913	DOWNSTREAM tRNA:CR31432 INTERGENIC
X	22017029	X_22017029_SNP [dm3] X_22615193_SNP [dm6]	G	C	4.289e^-4	0.913	INTRON Cda4
3R	14373309	3R_14373309_SNP [dm3] 3R_18547587_SNP [dm6]	C	T	4.310e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9873115	3R_9873115_SNP [dm3] 3R_14047393_SNP [dm6]	G	T	4.315e^-4	0.913	INTERGENIC
X	16065101	X_16065101_SNP [dm3] X_16171068_SNP [dm6]	G	C	4.317e^-4	0.913	INTERGENIC
3R	23539357	3R_23539357_SNP [dm3] 3R_27713635_SNP [dm6]	C	A	4.319e^-4	0.913	INTERGENIC
2R	15538558	2R_15538558_SNP [dm3] 2R_19651053_SNP [dm6]	G	C	4.334e^-4	0.913	INTERGENIC
2L	18934910	2L_18934910_SNP [dm3] 2L_18934910_SNP [dm6]	G	A	4.336e^-4	0.913	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	18934981	2L_18934981_SNP [dm3] 2L_18934981_SNP [dm6]	G	A	4.336e^-4	0.913	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	4684580	2R_4684580_SNP [dm3] 2R_8797075_SNP [dm6]	G	A	4.337e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	20586522	3L_20586522_SNP [dm3] 3L_20593422_SNP [dm6]	T	G	4.340e^-4	0.913	INTERGENIC
3R	15319679	3R_15319679_SNP [dm3] 3R_19493957_SNP [dm6]	C	T	4.343e^-4	0.913	SPLICE_SITE_REGION Dys INTRON Dys
2L	6532888	2L_6532888_SNP [dm3] 2L_6532888_SNP [dm6]	T	A	4.346e^-4	0.913	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12478669	2R_12478669_SNP [dm3] 2R_16591164_SNP [dm6]	G	A	4.350e^-4	0.913	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
2L	3962179	2L_3962179_SNP [dm3] 2L_3962179_SNP [dm6]	T	G	4.354e^-4	0.913	INTRON fred
2R	14069325	2R_14069325_SNP [dm3] 2R_18181820_SNP [dm6]	G	A	4.354e^-4	0.913	SPLICE_SITE_REGION nopo DOWNSTREAM CG5721 INTRON nopo
3R	15311346	3R_15311346_SNP [dm3] 3R_19485624_SNP [dm6]	C	T	4.369e^-4	0.913	SYNONYMOUS_CODING Dys
X	18036204	X_18036204_SNP [dm3] X_18142171_SNP [dm6]	G	A	4.372e^-4	0.913	INTERGENIC
3L	7088758	3L_7088758_SNP [dm3] 3L_7095658_SNP [dm6]	A	T	4.374e^-4	0.913	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9462239	2R_9462239_SNP [dm3] 2R_13574734_SNP [dm6]	G	C	4.375e^-4	0.913	UPSTREAM CR44365 & 1 other INTERGENIC
2R	11293317	2R_11293317_SNP [dm3] 2R_15405812_SNP [dm6]	G	A	4.380e^-4	0.913	DOWNSTREAM CR45020 INTRON CG43729
3R	1770744	3R_1770744_SNP [dm3] 3R_5945022_SNP [dm6]	T	A	4.382e^-4	0.913	INTRON CG34113
2R	5385245	2R_5385245_SNP [dm3] 2R_9497740_SNP [dm6]	A	G	4.387e^-4	0.913	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
3L	5237909	3L_5237909_SNP [dm3] 3L_5244809_SNP [dm6]	G	T	4.390e^-4	0.913	INTRON shep
2R	16600081	2R_16600081_SNP [dm3] 2R_20712576_SNP [dm6]	G	T	4.393e^-4	0.913	INTRON dpr
2L	4716422	2L_4716422_SNP [dm3] 2L_4716422_SNP [dm6]	C	T	4.406e^-4	0.913	INTRON CG34351
X	22141765	X_22141765_SNP [dm3] X_22739929_SNP [dm6]	T	A	4.407e^-4	0.913	INTRON CR44997
3R	15311947	3R_15311947_SNP [dm3] 3R_19486225_SNP [dm6]	C	T	4.409e^-4	0.913	UPSTREAM Dys INTRON Dys
3R	24390978	3R_24390978_SNP [dm3] 3R_28565256_SNP [dm6]	T	C	4.431e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16319451	2L_16319451_SNP [dm3] 2L_16319451_SNP [dm6]	T	A	4.438e^-4	0.913	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15309458	3R_15309458_SNP [dm3] 3R_19483736_SNP [dm6]	C	A	4.439e^-4	0.913	INTRON Dys
2L	5899114	2L_5899114_SNP [dm3] 2L_5899114_SNP [dm6]	G	T	4.439e^-4	0.913	DOWNSTREAM CR44579 INTERGENIC
3R	10409258	3R_10409258_SNP [dm3] 3R_14583536_SNP [dm6]	T	C	4.445e^-4	0.913	INTRON stumps
3R	18027141	3R_18027141_SNP [dm3] 3R_22201419_SNP [dm6]	C	T	4.447e^-4	0.913	INTRON SKIP & 1 other
X	21029467	X_21029467_INS [dm3] X_21158440_INS [dm6]	T	TGTAAAAGTT	4.450e^-4	0.913	INTERGENIC	transposable element FlyBase
2R	6833157	2R_6833157_SNP [dm3] 2R_10945652_SNP [dm6]	C	G	4.461e^-4	0.913	UPSTREAM CR45228 INTERGENIC
2R	14245492	2R_14245492_SNP [dm3] 2R_18357987_SNP [dm6]	A	C	4.470e^-4	0.913	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16756291	2R_16756291_SNP [dm3] 2R_20868786_SNP [dm6]	G	T	4.475e^-4	0.913	UTR_3_PRIME IM4 DOWNSTREAM IM4
3R	14175846	3R_14175846_SNP [dm3] 3R_18350124_SNP [dm6]	C	A	4.481e^-4	0.913	INTRON CG15803
3L	12242539	3L_12242539_SNP [dm3] 3L_12249439_SNP [dm6]	A	G	4.483e^-4	0.913	INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3696083	2L_3696083_SNP [dm3] 2L_3696083_SNP [dm6]	G	A	4.484e^-4	0.913	UPSTREAM CG16713 DOWNSTREAM CG16712 INTERGENIC
X	14043638	X_14043638_SNP [dm3] X_14149605_SNP [dm6]	G	A	4.489e^-4	0.913	INTERGENIC
2R	18585609	2R_18585609_SNP [dm3] 2R_22698104_SNP [dm6]	A	C	4.491e^-4	0.913	NON_SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11202970	2R_11202970_SNP [dm3] 2R_15315465_SNP [dm6]	G	A	4.499e^-4	0.913	SYNONYMOUS_CODING mus210
X	20491265	X_20491265_SNP [dm3] X_20620238_SNP [dm6]	C	A	4.503e^-4	0.913	INTRON RunxA
3R	15311122	3R_15311122_SNP [dm3] 3R_19485400_SNP [dm6]	T	C	4.505e^-4	0.913	INTRON Dys
2L	10567916	2L_10567916_SNP [dm3] 2L_10567916_SNP [dm6]	G	A	4.506e^-4	0.913	SYNONYMOUS_CODING CG6138 INTRON Trim9
3R	13821881	3R_13821881_INS [dm3] 3R_17996159_INS [dm6]	G	GATGACCATTTGG...	4.508e^-4	0.913	INTRON cpo
3L	13898177	3L_13898177_SNP [dm3] 3L_13905077_SNP [dm6]	G	A	4.521e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14245350	2R_14245350_SNP [dm3] 2R_18357845_SNP [dm6]	T	C	4.522e^-4	0.913	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12212147	3R_12212147_SNP [dm3] 3R_16386425_SNP [dm6]	C	T	4.527e^-4	0.913	INTRON ss	regulatory region REDfly_CRMs
3L	14157818	3L_14157818_SNP [dm3] 3L_14164718_SNP [dm6]	C	A	4.542e^-4	0.913	INTERGENIC	regulatory region REDfly_CRMs
2L	21705903	2L_21705903_SNP [dm3] 2L_21705903_SNP [dm6]	T	A	4.545e^-4	0.913	INTRON CG31619	transposable element FlyBase
2R	18255089	2R_18255089_SNP [dm3] 2R_22367584_SNP [dm6]	G	A	4.561e^-4	0.913	INTRON Liprin-gamma
2L	7217926	2L_7217926_SNP [dm3] 2L_7217926_SNP [dm6]	G	T	4.573e^-4	0.913	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9015002	3L_9015002_SNP [dm3] 3L_9021902_SNP [dm6]	A	T	4.586e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	1967041	2L_1967041_SNP [dm3] 2L_1967041_SNP [dm6]	G	T	4.591e^-4	0.913	INTRON erm	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25856806	3R_25856806_SNP [dm3] 3R_30031084_SNP [dm6]	G	C	4.593e^-4	0.913	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18214782	2R_18214782_SNP [dm3] 2R_22327277_SNP [dm6]	C	T	4.595e^-4	0.913	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21170237	X_21170237_SNP [dm3] X_21299210_SNP [dm6]	C	A	4.602e^-4	0.913	UPSTREAM mir-2535b INTRON CG1718
X	16937274	X_16937274_SNP [dm3] X_17043241_SNP [dm6]	T	C	4.605e^-4	0.913	INTRON CG45002
2R	15032818	2R_15032818_DEL [dm3] 2R_19145313_DEL [dm6]	AA	A	4.624e^-4	0.913	INTRON ena EXON CR43399	TF binding site BDTNP1_TFBS_twi
2L	8391909	2L_8391909_SNP [dm3] 2L_8391909_SNP [dm6]	G	C	4.630e^-4	0.913	SYNONYMOUS_CODING CG42820 DOWNSTREAM Acp29AB
3R	14879172	3R_14879172_DEL [dm3] 3R_19053450_DEL [dm6]	AA	A	4.631e^-4	0.913	INTRON cdi
2L	1277417	2L_1277417_SNP [dm3] 2L_1277417_SNP [dm6]	G	A	4.640e^-4	0.913	INTRON robo3
2R	14245486	2R_14245486_SNP [dm3] 2R_18357981_SNP [dm6]	C	T	4.646e^-4	0.913	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22003648	3R_22003648_SNP [dm3] 3R_26177926_SNP [dm6]	G	A	4.650e^-4	0.913	INTRON CG31323
X	21916414	X_21916414_SNP [dm3] X_22514578_SNP [dm6]	C	A	4.653e^-4	0.913	UPSTREAM CG17600 EXON CR43962
2R	18585496	2R_18585496_SNP [dm3] 2R_22697991_SNP [dm6]	A	G	4.668e^-4	0.913	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11108617	2R_11108617_SNP [dm3] 2R_15221112_SNP [dm6]	A	G	4.676e^-4	0.913	UPSTREAM Hex-C INTRON CG8079
2R	8658164	2R_8658164_SNP [dm3] 2R_12770659_SNP [dm6]	C	G	4.682e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3471219	2R_3471219_SNP [dm3] 2R_7583714_SNP [dm6]	C	T	4.682e^-4	0.913	INTRON blow
2L	15752171	2L_15752171_SNP [dm3] 2L_15752171_SNP [dm6]	T	A	4.684e^-4	0.913	UPSTREAM l_2_35Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19043342	X_19043342_SNP [dm3] X_19149309_SNP [dm6]	A	C	4.689e^-4	0.913	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3L	10483882	3L_10483882_SNP [dm3] 3L_10490782_SNP [dm6]	G	T	4.698e^-4	0.913	UPSTREAM S-Lap4 INTRON A2bp1
3L	7080571	3L_7080571_SNP [dm3] 3L_7087471_SNP [dm6]	C	A	4.698e^-4	0.913	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
3L	5122687	3L_5122687_SNP [dm3] 3L_5129587_SNP [dm6]	A	C	4.706e^-4	0.913	UPSTREAM CG4597 INTERGENIC
3R	23539356	3R_23539356_SNP [dm3] 3R_27713634_SNP [dm6]	T	G	4.714e^-4	0.913	INTERGENIC
2L	5064075	2L_5064075_SNP [dm3] 2L_5064075_SNP [dm6]	T	A	4.714e^-4	0.913	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11311341	2L_11311341_DEL [dm3] 2L_11311341_DEL [dm6]	TCGC	T	4.715e^-4	0.913	INTERGENIC
2L	14697330	2L_14697330_SNP [dm3] 2L_14697330_SNP [dm6]	T	C	4.717e^-4	0.913	INTERGENIC
2R	3899786	2R_3899786_SNP [dm3] 2R_8012281_SNP [dm6]	T	A	4.720e^-4	0.913	SPLICE_SITE_REGION CG14762 SYNONYMOUS_CODING CG14762	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	25288107	3R_25288107_SNP [dm3] 3R_29462385_SNP [dm6]	G	A	4.721e^-4	0.913	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12141971	3R_12141971_SNP [dm3] 3R_16316249_SNP [dm6]	G	C	4.723e^-4	0.913	INTRON Sulf1
3R	16099420	3R_16099420_SNP [dm3] 3R_20273698_SNP [dm6]	A	G	4.734e^-4	0.913	INTRON cic
3L	5547744	3L_5547744_SNP [dm3] 3L_5554644_SNP [dm6]	G	A	4.740e^-4	0.913	INTERGENIC
2R	15001999	2R_15001999_SNP [dm3] 2R_19114494_SNP [dm6]	G	C	4.746e^-4	0.913	INTRON 5-HT1A
2L	8380332	2L_8380332_SNP [dm3] 2L_8380332_SNP [dm6]	A	G	4.750e^-4	0.913	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6834112	3L_6834112_SNP [dm3] 3L_6841012_SNP [dm6]	G	T	4.752e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13908282	2L_13908282_SNP [dm3] 2L_13908282_SNP [dm6]	G	A	4.757e^-4	0.913	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3638662	2L_3638662_SNP [dm3] 2L_3638662_SNP [dm6]	G	A	4.760e^-4	0.913	INTRON for
3R	23815302	3R_23815302_SNP [dm3] 3R_27989580_SNP [dm6]	G	A	4.762e^-4	0.913	DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17846136	2R_17846136_SNP [dm3] 2R_21958631_SNP [dm6]	A	T	4.764e^-4	0.913	INTERGENIC
2L	15769750	2L_15769750_SNP [dm3] 2L_15769750_SNP [dm6]	C	T	4.782e^-4	0.913	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6162047	2R_6162047_SNP [dm3] 2R_10274542_SNP [dm6]	T	C	4.788e^-4	0.913	INTRON CAP
2R	3439952	2R_3439952_DEL [dm3] 2R_7552447_DEL [dm6]	CTACATTGC	C	4.790e^-4	0.913	INTRON Corin
X	20371725	X_20371725_SNP [dm3] X_20500698_SNP [dm6]	C	T	4.791e^-4	0.913	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7480398	2L_7480398_SNP [dm3] 2L_7480398_SNP [dm6]	G	A	4.792e^-4	0.913	INTRON Ziz
3R	16101172	3R_16101172_SNP [dm3] 3R_20275450_SNP [dm6]	A	G	4.794e^-4	0.913	INTRON cic	TF binding site BDTNP1_TFBS_twi
2L	14765761	2L_14765761_SNP [dm3] 2L_14765761_SNP [dm6]	C	T	4.806e^-4	0.913	UPSTREAM CG4701 INTERGENIC
X	11112326	X_11112326_SNP [dm3] X_11218293_SNP [dm6]	G	C	4.811e^-4	0.913	INTERGENIC
3L	8769414	3L_8769414_SNP [dm3] 3L_8776314_SNP [dm6]	C	A	4.821e^-4	0.913	INTRON Fhos
2R	17334600	2R_17334600_SNP [dm3] 2R_21447095_SNP [dm6]	C	T	4.827e^-4	0.913	INTRON Sdc
2L	4189990	2L_4189990_SNP [dm3] 2L_4189990_SNP [dm6]	G	A	4.843e^-4	0.913	SYNONYMOUS_CODING CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
2L	7217931	2L_7217931_SNP [dm3] 2L_7217931_SNP [dm6]	C	A	4.848e^-4	0.913	DOWNSTREAM CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	7818730	X_7818730_SNP [dm3] X_7924697_SNP [dm6]	A	C	4.858e^-4	0.913	UTR_3_PRIME CG10777
2L	2268313	2L_2268313_SNP [dm3] 2L_2268313_SNP [dm6]	G	T	4.888e^-4	0.913	UTR_3_PRIME CG17242
X	20396997	X_20396997_DEL [dm3] X_20525970_DEL [dm6]	TA	T	4.888e^-4	0.913	INTERGENIC	transposable element FlyBase
2L	14254876	2L_14254876_SNP [dm3] 2L_14254876_SNP [dm6]	C	G	4.892e^-4	0.913	INTERGENIC
2L	5482465	2L_5482465_SNP [dm3] 2L_5482465_SNP [dm6]	C	A	4.895e^-4	0.913	INTERGENIC
3R	12141934	3R_12141934_SNP [dm3] 3R_16316212_SNP [dm6]	G	T	4.898e^-4	0.913	INTRON Sulf1
3L	13259891	3L_13259891_SNP [dm3] 3L_13266791_SNP [dm6]	A	C	4.899e^-4	0.913	INTRON caps	TF binding site BDTNP1_TFBS_twi
3L	4848198	3L_4848198_SNP [dm3] 3L_4848198_SNP [dm6]	C	T	4.904e^-4	0.913	INTERGENIC
2L	11641084	2L_11641084_SNP [dm3] 2L_11641084_SNP [dm6]	A	G	4.910e^-4	0.913	INTERGENIC
3R	16099092	3R_16099092_SNP [dm3] 3R_20273370_SNP [dm6]	T	A	4.911e^-4	0.913	INTRON cic
3L	6471549	3L_6471549_SNP [dm3] 3L_6478449_SNP [dm6]	T	C	4.913e^-4	0.913	INTRON CG42747
3L	2346677	3L_2346677_SNP [dm3] 3L_2346677_SNP [dm6]	T	C	4.917e^-4	0.913	DOWNSTREAM MsR1 INTERGENIC
2L	842523	2L_842523_SNP [dm3] 2L_842523_SNP [dm6]	T	A	4.925e^-4	0.913	INTRON drongo
2R	18030074	2R_18030074_SNP [dm3] 2R_22142569_SNP [dm6]	C	T	4.937e^-4	0.913	INTRON a	TF binding site BDTNP1_TFBS_twi
2R	3255999	2R_3255999_SNP [dm3] 2R_7368494_SNP [dm6]	T	G	4.941e^-4	0.913	SYNONYMOUS_CODING Dscam1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4136087	2L_4136087_SNP [dm3] 2L_4136087_SNP [dm6]	C	G	4.941e^-4	0.913	INTERGENIC
2L	15399491	2L_15399491_SNP [dm3] 2L_15399491_SNP [dm6]	C	T	4.941e^-4	0.913	UPSTREAM CR45373 DOWNSTREAM CR44860 & 1 other INTERGENIC
2R	11920718	2R_11920718_SNP [dm3] 2R_16033213_SNP [dm6]	G	A	4.946e^-4	0.913	INTRON SP2353
2R	9722363	2R_9722363_SNP [dm3] 2R_13834858_SNP [dm6]	A	T	4.947e^-4	0.913	INTRON CG6337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15974738	3L_15974738_SNP [dm3] 3L_15981638_SNP [dm6]	C	A	4.947e^-4	0.913	UTR_3_PRIME CG17027 INTRON brm	TF binding site mE1_TFBS_cad
2R	19122579	2R_19122579_SNP [dm3] 2R_23235056_SNP [dm6]	C	T	4.960e^-4	0.913	INTERGENIC
2L	19118443	2L_19118443_SNP [dm3] 2L_19118443_SNP [dm6]	C	T	4.983e^-4	0.913	INTRON Ddc	regulatory region REDfly_CRMs
2R	5195542	2R_5195542_SNP [dm3] 2R_9308037_SNP [dm6]	A	T	4.990e^-4	0.913	UTR_5_PRIME Myd88	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11164508	2R_11164508_SNP [dm3] 2R_15277003_SNP [dm6]	T	C	4.995e^-4	0.913	INTRON Trpm

By genomic position
Variant impact
Gene name

Cuticul_6_C23_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results