DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.825e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0465

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.4067	0.0149
In_3R_K	14.4302	0.0007

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2826 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.583e^-8	0.03	INTRON Octbeta3R
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	4.496e^-8	0.042	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	3.644e^-7	0.147	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	3.857e^-7	0.147	INTRON Octbeta3R
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	3.914e^-7	0.147	INTRON CG14877
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	7.814e^-7	0.226	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	8.575e^-7	0.226	INTRON beat-Vc
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	1.019e^-6	0.226	SYNONYMOUS_CODING GluRIIE
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	1.086e^-6	0.226	SYNONYMOUS_CODING GluRIIE
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	1.679e^-6	0.246	INTRON Rh7
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	1.871e^-6	0.246	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	1.917e^-6	0.246	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	1.949e^-6	0.246	INTRON CG14692
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	2.195e^-6	0.246	DOWNSTREAM TkR86C INTERGENIC
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	2.283e^-6	0.246	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	2.321e^-6	0.246	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	2.430e^-6	0.246	INTERGENIC
3L	9862039	3L_9862039_SNP [dm3] 3L_9868939_SNP [dm6]	T	C	2.452e^-6	0.246	SPLICE_SITE_REGION CG8108 INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	2.545e^-6	0.246	INTERGENIC
3R	20704871	3R_20704871_INS [dm3] 3R_24879149_INS [dm6]	T	TGC	2.627e^-6	0.246	DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	2.903e^-6	0.258	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6594685	2R_6594685_SNP [dm3] 2R_10707180_SNP [dm6]	G	A	3.028e^-6	0.258	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	3.508e^-6	0.276	DOWNSTREAM CR44941 INTERGENIC
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	3.602e^-6	0.276	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	6604624	3R_6604624_SNP [dm3] 3R_10778902_SNP [dm6]	T	A	3.681e^-6	0.276	UPSTREAM Desi INTERGENIC
3L	3735862	3L_3735862_SNP [dm3] 3L_3735862_SNP [dm6]	T	G	4.500e^-6	0.325	INTRON CG32264
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	4.693e^-6	0.326	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	5.198e^-6	0.348	INTRON Cad87A
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	5.595e^-6	0.354	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13326240	X_13326240_SNP [dm3] X_13432207_SNP [dm6]	C	G	5.668e^-6	0.354	INTERGENIC
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	5.929e^-6	0.356	UPSTREAM CG3306 & 1 other INTERGENIC
3L	12163807	3L_12163807_SNP [dm3] 3L_12170707_SNP [dm6]	T	C	6.076e^-6	0.356	INTRON Rh7
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	7.224e^-6	0.376	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	7.339e^-6	0.376	INTERGENIC
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	7.393e^-6	0.376	INTERGENIC
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	7.635e^-6	0.376	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12462225	3L_12462225_SNP [dm3] 3L_12469125_SNP [dm6]	C	A	7.751e^-6	0.376	UTR_3_PRIME CG32102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	3447091	3L_3447091_SNP [dm3] 3L_3447091_SNP [dm6]	C	T	7.793e^-6	0.376	INTRON eIF5B
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	7.961e^-6	0.376	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	8.370e^-6	0.376	INTRON vir-1
3R	6273672	3R_6273672_SNP [dm3] 3R_10447950_SNP [dm6]	A	C	8.388e^-6	0.376	INTERGENIC
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	8.766e^-6	0.376	INTRON TkR86C
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	8.940e^-6	0.376	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10999226	3R_10999226_SNP [dm3] 3R_15173504_SNP [dm6]	G	T	9.305e^-6	0.376	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9862051	3L_9862051_SNP [dm3] 3L_9868951_SNP [dm6]	T	A	9.384e^-6	0.376	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	9.409e^-6	0.376	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	9.426e^-6	0.376	INTRON Cad87A
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	1.018e^-5	0.387	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	1.024e^-5	0.387	DOWNSTREAM Cpn INTERGENIC
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	1.032e^-5	0.387	UPSTREAM CG3306 & 1 other INTERGENIC
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	1.101e^-5	0.39	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12464869	3L_12464869_SNP [dm3] 3L_12471769_SNP [dm6]	A	T	1.110e^-5	0.39	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	1.119e^-5	0.39	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	16473179	3R_16473179_SNP [dm3] 3R_20647457_SNP [dm6]	T	G	1.122e^-5	0.39	SYNONYMOUS_CODING GluRIIE
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	1.238e^-5	0.408	SYNONYMOUS_CODING CG30344
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.246e^-5	0.408	UPSTREAM hoe1 INTRON hoe1
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	1.252e^-5	0.408	INTRON kek3
3R	16473173	3R_16473173_SNP [dm3] 3R_20647451_SNP [dm6]	G	A	1.290e^-5	0.408	SYNONYMOUS_CODING GluRIIE
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	1.312e^-5	0.408	INTRON 4EHP
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	1.346e^-5	0.408	INTRON ush	regulatory region REDfly_CRMs
3R	6273662	3R_6273662_INS [dm3] 3R_10447940_INS [dm6]	C	CC	1.379e^-5	0.408	INTERGENIC
3R	11724703	3R_11724703_SNP [dm3] 3R_15898981_SNP [dm6]	T	G	1.412e^-5	0.408	INTRON glob1
3L	8608143	3L_8608143_SNP [dm3] 3L_8615043_SNP [dm6]	C	T	1.434e^-5	0.408	SYNONYMOUS_CODING CG6282
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	1.447e^-5	0.408	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	6514764	3R_6514764_SNP [dm3] 3R_10689042_SNP [dm6]	C	A	1.468e^-5	0.408	INTRON Skeletor	TF binding site mE1_TFBS_cad
3L	9862058	3L_9862058_SNP [dm3] 3L_9868958_SNP [dm6]	T	C	1.477e^-5	0.408	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5950110	3L_5950110_INS [dm3] 3L_5957010_INS [dm6]	T	TT	1.504e^-5	0.408	INTERGENIC
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	1.510e^-5	0.408	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.530e^-5	0.408	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
X	13326260	X_13326260_SNP [dm3] X_13432227_SNP [dm6]	A	C	1.544e^-5	0.408	INTERGENIC
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	1.556e^-5	0.408	UPSTREAM CG10635 & 1 other INTERGENIC
3R	12634196	3R_12634196_SNP [dm3] 3R_16808474_SNP [dm6]	A	C	1.569e^-5	0.408	UTR_3_PRIME abd-A
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	1.604e^-5	0.408	INTRON Cad87A
3L	15777515	3L_15777515_SNP [dm3] 3L_15784415_SNP [dm6]	T	A	1.608e^-5	0.408	INTERGENIC
3L	15777536	3L_15777536_SNP [dm3] 3L_15784436_SNP [dm6]	T	A	1.654e^-5	0.409	INTERGENIC
3L	3735843	3L_3735843_SNP [dm3] 3L_3735843_SNP [dm6]	C	T	1.676e^-5	0.409	INTRON CG32264
3L	5361957	3L_5361957_DEL [dm3] 3L_5368857_DEL [dm6]	ATTAAACTGAGTATTTCGAA...	A	1.679e^-5	0.409	UPSTREAM CG10635 & 1 other INTERGENIC
3L	9594519	3L_9594519_SNP [dm3] 3L_9601419_SNP [dm6]	T	A	1.769e^-5	0.425	UPSTREAM CG3306 & 1 other INTERGENIC
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	1.816e^-5	0.427	UPSTREAM CG10635 & 1 other INTERGENIC
2L	14423107	2L_14423107_SNP [dm3] 2L_14423107_SNP [dm6]	T	A	1.892e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9870489	3L_9870489_SNP [dm3] 3L_9877389_SNP [dm6]	G	C	1.917e^-5	0.427	DOWNSTREAM CR45406 INTERGENIC
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	1.936e^-5	0.427	SPLICE_SITE_REGION mbc INTRON mbc
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.950e^-5	0.427	INTRON fru
3R	25192528	3R_25192528_SNP [dm3] 3R_29366806_SNP [dm6]	C	A	2.004e^-5	0.427	INTERGENIC
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	2.037e^-5	0.427	INTRON CadN
3L	12487143	3L_12487143_SNP [dm3] 3L_12494043_SNP [dm6]	T	G	2.068e^-5	0.427	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	2.163e^-5	0.427	INTERGENIC
3R	6546240	3R_6546240_SNP [dm3] 3R_10720518_SNP [dm6]	T	C	2.183e^-5	0.427	INTERGENIC
3R	27166882	3R_27166882_INS [dm3] 3R_31341160_INS [dm6]	C	CGC	2.207e^-5	0.427	INTRON CG34347
2L	11919167	2L_11919167_SNP [dm3] 2L_11919167_SNP [dm6]	A	C	2.238e^-5	0.427	INTRON Pde1c
3R	25192514	3R_25192514_SNP [dm3] 3R_29366792_SNP [dm6]	A	G	2.303e^-5	0.427	INTERGENIC
2L	11919181	2L_11919181_SNP [dm3] 2L_11919181_SNP [dm6]	T	A	2.319e^-5	0.427	INTRON Pde1c
2L	6306101	2L_6306101_SNP [dm3] 2L_6306101_SNP [dm6]	A	C	2.319e^-5	0.427	INTRON Ddr
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	2.319e^-5	0.427	SYNONYMOUS_CODING decay UPSTREAM Gr89a
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	2.354e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	2.360e^-5	0.427	UPSTREAM CG3306 & 1 other INTERGENIC
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	2.374e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	2.392e^-5	0.427	INTRON Cad87A
3R	6514731	3R_6514731_SNP [dm3] 3R_10689009_SNP [dm6]	C	G	2.409e^-5	0.427	INTRON Skeletor
3R	23122484	3R_23122484_SNP [dm3] 3R_27296762_SNP [dm6]	G	T	2.428e^-5	0.427	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5196405	X_5196405_SNP [dm3] X_5302372_SNP [dm6]	C	G	2.433e^-5	0.427	DOWNSTREAM CG3323 INTRON CG42749
3R	6590332	3R_6590332_SNP [dm3] 3R_10764610_SNP [dm6]	C	A	2.433e^-5	0.427	INTRON Cap-H2
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	2.436e^-5	0.427	INTRON 4EHP
3R	16472598	3R_16472598_SNP [dm3] 3R_20646876_SNP [dm6]	C	T	2.440e^-5	0.427	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
3L	12458544	3L_12458544_SNP [dm3] 3L_12465444_SNP [dm6]	G	T	2.457e^-5	0.427	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	9862047	3L_9862047_SNP [dm3] 3L_9868947_SNP [dm6]	T	G	2.513e^-5	0.427	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8145393	2R_8145393_SNP [dm3] 2R_12257888_SNP [dm6]	A	T	2.524e^-5	0.427	INTRON Vha36-2	TF binding site mE1_TFBS_cad
3L	3446384	3L_3446384_SNP [dm3] 3L_3446384_SNP [dm6]	C	T	2.534e^-5	0.427	INTRON eIF5B
3R	12634175	3R_12634175_SNP [dm3] 3R_16808453_SNP [dm6]	T	C	2.557e^-5	0.427	UTR_3_PRIME abd-A
3R	6216385	3R_6216385_SNP [dm3] 3R_10390663_SNP [dm6]	G	A	2.602e^-5	0.427	INTRON cwo
3R	16472513	3R_16472513_SNP [dm3] 3R_20646791_SNP [dm6]	A	G	2.610e^-5	0.427	SYNONYMOUS_CODING GluRIIE
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	2.611e^-5	0.427	INTRON fru
2L	18145657	2L_18145657_SNP [dm3] 2L_18145657_SNP [dm6]	C	T	2.614e^-5	0.427	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8129519	2R_8129519_DEL [dm3] 2R_12242014_DEL [dm6]	TAAT	T	2.625e^-5	0.427	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	16472571	3R_16472571_SNP [dm3] 3R_20646849_SNP [dm6]	A	G	2.625e^-5	0.427	INTRON GluRIIE
3R	16472591	3R_16472591_SNP [dm3] 3R_20646869_SNP [dm6]	T	A	2.693e^-5	0.427	INTRON GluRIIE
3R	16472596	3R_16472596_SNP [dm3] 3R_20646874_SNP [dm6]	T	A	2.693e^-5	0.427	INTRON GluRIIE
3R	16472615	3R_16472615_SNP [dm3] 3R_20646893_SNP [dm6]	G	A	2.693e^-5	0.427	SYNONYMOUS_CODING GluRIIE
3R	13045164	3R_13045164_SNP [dm3] 3R_17219442_SNP [dm6]	A	C	2.711e^-5	0.427	UTR_5_PRIME CG31262
2L	14423078	2L_14423078_SNP [dm3] 2L_14423078_SNP [dm6]	A	T	2.750e^-5	0.43	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16472530	3R_16472530_SNP [dm3] 3R_20646808_SNP [dm6]	A	G	2.817e^-5	0.435	SYNONYMOUS_CODING GluRIIE
3L	13253739	3L_13253739_SNP [dm3] 3L_13260639_SNP [dm6]	G	C	2.853e^-5	0.435	INTRON caps
3R	16472583	3R_16472583_SNP [dm3] 3R_20646861_SNP [dm6]	G	A	2.877e^-5	0.435	INTRON GluRIIE
3R	16472573	3R_16472573_DEL [dm3] 3R_20646851_DEL [dm6]	TGAGTTT	AA	2.902e^-5	0.435	INTRON GluRIIE
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	2.916e^-5	0.435	INTRON CG42313
3L	15901377	3L_15901377_SNP [dm3] 3L_15908277_SNP [dm6]	G	T	2.933e^-5	0.435	INTRON sff
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.969e^-5	0.435	DOWNSTREAM CG18109 INTERGENIC
2R	8176885	2R_8176885_SNP [dm3] 2R_12289380_SNP [dm6]	G	C	2.970e^-5	0.435	INTRON CG42700
X	16718356	X_16718356_SNP [dm3] X_16824323_SNP [dm6]	A	T	3.084e^-5	0.445	INTRON CG4829
X	10795411	X_10795411_SNP [dm3] X_10901378_SNP [dm6]	T	C	3.182e^-5	0.445	NON_SYNONYMOUS_CODING CG15208
2L	14423136	2L_14423136_SNP [dm3] 2L_14423136_SNP [dm6]	A	G	3.204e^-5	0.445	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13020256	3R_13020256_SNP [dm3] 3R_17194534_SNP [dm6]	G	C	3.229e^-5	0.445	INTRON Mur89F
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	3.238e^-5	0.445	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7988292	3R_7988292_SNP [dm3] 3R_12162570_SNP [dm6]	G	C	3.255e^-5	0.445	DOWNSTREAM Cpn INTERGENIC
2R	8137315	2R_8137315_SNP [dm3] 2R_12249810_SNP [dm6]	G	A	3.336e^-5	0.445	INTERGENIC
3L	1725692	3L_1725692_SNP [dm3] 3L_1725692_SNP [dm6]	A	T	3.360e^-5	0.445	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	3.385e^-5	0.445	UPSTREAM CG34210 INTERGENIC
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	3.390e^-5	0.445	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
X	14542870	X_14542870_SNP [dm3] X_14648837_SNP [dm6]	C	T	3.395e^-5	0.445	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2L	1093955	2L_1093955_SNP [dm3] 2L_1093955_SNP [dm6]	C	T	3.437e^-5	0.445	INTRON CG4629
3R	10999290	3R_10999290_SNP [dm3] 3R_15173568_SNP [dm6]	A	T	3.450e^-5	0.445	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7314852	3L_7314852_SNP [dm3] 3L_7321752_SNP [dm6]	C	T	3.458e^-5	0.445	NON_SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
3R	8120715	3R_8120715_SNP [dm3] 3R_12294993_SNP [dm6]	C	T	3.466e^-5	0.445	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19590175	3R_19590175_SNP [dm3] 3R_23764453_SNP [dm6]	G	T	3.495e^-5	0.445	SYNONYMOUS_CODING Lsd-1 START_GAINED Lsd-1 UTR_5_PRIME Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	3.510e^-5	0.445	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	3.536e^-5	0.445	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2604424	3L_2604424_SNP [dm3] 3L_2604424_SNP [dm6]	G	T	3.560e^-5	0.445	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6582569	3R_6582569_SNP [dm3] 3R_10756847_SNP [dm6]	A	T	3.589e^-5	0.445	SYNONYMOUS_CODING CG31272 EXON CR45015
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	3.599e^-5	0.445	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
X	5196409	X_5196409_SNP [dm3] X_5302376_SNP [dm6]	T	A	3.612e^-5	0.445	DOWNSTREAM CG3323 INTRON CG42749
3L	9731081	3L_9731081_SNP [dm3] 3L_9737981_SNP [dm6]	G	A	3.664e^-5	0.445	INTRON CG42268
3R	6598184	3R_6598184_DEL [dm3] 3R_10772462_DEL [dm6]	GGCGATG	G	3.669e^-5	0.445	DOWNSTREAM fau & 1 other	TF binding site mE1_TFBS_cad
2L	5717469	2L_5717469_SNP [dm3] 2L_5717469_SNP [dm6]	T	A	3.693e^-5	0.445	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	15042229	3L_15042229_DEL [dm3] 3L_15049129_DEL [dm6]	AA	A	3.694e^-5	0.445	DOWNSTREAM CG43678 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
3L	9857485	3L_9857485_SNP [dm3] 3L_9864385_SNP [dm6]	C	G	3.732e^-5	0.445	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	3.742e^-5	0.445	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8775774	3R_8775774_SNP [dm3] 3R_12950052_SNP [dm6]	C	G	3.748e^-5	0.445	UTR_3_PRIME grsm
3L	12185525	3L_12185525_SNP [dm3] 3L_12192425_SNP [dm6]	C	T	3.748e^-5	0.445	SPLICE_SITE_ACCEPTOR thoc6 SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6 INTRON thoc6
3L	12458635	3L_12458635_SNP [dm3] 3L_12465535_SNP [dm6]	G	A	3.803e^-5	0.449	INTRON eyg	TF binding site mE1_TFBS_chinmo
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	3.863e^-5	0.452	INTERGENIC
3L	9862075	3L_9862075_SNP [dm3] 3L_9868975_SNP [dm6]	C	A	3.880e^-5	0.452	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	3.994e^-5	0.455	INTRON Octbeta2R
3R	7967624	3R_7967624_SNP [dm3] 3R_12141902_SNP [dm6]	C	G	4.009e^-5	0.455	INTRON dpr15	TF binding site BDTNP1_TFBS_da
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	4.037e^-5	0.455	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	8129546	2R_8129546_SNP [dm3] 2R_12242041_SNP [dm6]	C	T	4.066e^-5	0.455	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	4.083e^-5	0.455	UPSTREAM CR45374 INTERGENIC
3R	12629558	3R_12629558_SNP [dm3] 3R_16803836_SNP [dm6]	G	A	4.094e^-5	0.455	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19393610	2R_19393610_SNP [dm3] 2R_23506087_SNP [dm6]	G	A	4.098e^-5	0.455	DOWNSTREAM CR43794 INTERGENIC
2R	5018046	2R_5018046_SNP [dm3] 2R_9130541_SNP [dm6]	G	T	4.098e^-5	0.455	INTRON CG18659	TF binding site BDTNP1_TFBS_Med
3L	9594490	3L_9594490_DEL [dm3] 3L_9601390_DEL [dm6]	ATTTCT	A	4.125e^-5	0.455	UPSTREAM CG3306 & 1 other INTERGENIC
3R	8208678	3R_8208678_SNP [dm3] 3R_12382956_SNP [dm6]	G	C	4.212e^-5	0.456	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16472789	3R_16472789_SNP [dm3] 3R_20647067_SNP [dm6]	T	A	4.217e^-5	0.456	INTRON GluRIIE
3R	16472815	3R_16472815_SNP [dm3] 3R_20647093_SNP [dm6]	A	T	4.217e^-5	0.456	INTRON GluRIIE
3L	3590835	3L_3590835_SNP [dm3] 3L_3590835_SNP [dm6]	T	G	4.233e^-5	0.456	INTRON Eip63E
2R	8129543	2R_8129543_INS [dm3] 2R_12242038_INS [dm6]	T	TA	4.275e^-5	0.456	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	6565983	3R_6565983_SNP [dm3] 3R_10740261_SNP [dm6]	T	A	4.338e^-5	0.456	INTRON TkR86C
3R	13087936	3R_13087936_SNP [dm3] 3R_17262214_SNP [dm6]	A	G	4.343e^-5	0.456	INTRON beat-IIb
3R	10634085	3R_10634085_SNP [dm3] 3R_14808363_SNP [dm6]	C	T	4.369e^-5	0.456	SPLICE_SITE_REGION btsz SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10634091	3R_10634091_SNP [dm3] 3R_14808369_SNP [dm6]	G	A	4.369e^-5	0.456	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8209974	3R_8209974_SNP [dm3] 3R_12384252_SNP [dm6]	T	A	4.377e^-5	0.456	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15944024	2L_15944024_SNP [dm3] 2L_15944024_SNP [dm6]	C	G	4.439e^-5	0.457	INTRON beat-Ib
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	4.448e^-5	0.457	INTRON Cad87A
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	4.501e^-5	0.457	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	4.528e^-5	0.457	INTRON CG32432
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	4.528e^-5	0.457	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	4.543e^-5	0.457	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	4.555e^-5	0.457	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	4.626e^-5	0.46	INTRON grsm
3L	2604371	3L_2604371_SNP [dm3] 3L_2604371_SNP [dm6]	G	A	4.679e^-5	0.46	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6563404	3R_6563404_SNP [dm3] 3R_10737682_SNP [dm6]	G	A	4.714e^-5	0.46	UTR_3_PRIME TkR86C
3R	6484716	3R_6484716_SNP [dm3] 3R_10658994_SNP [dm6]	G	A	4.715e^-5	0.46	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	4.721e^-5	0.46	EXON CR43404
3L	9857186	3L_9857186_SNP [dm3] 3L_9864086_SNP [dm6]	C	T	4.734e^-5	0.46	UTR_5_PRIME iPLA2-VIA UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	4.836e^-5	0.461	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9458974	3R_9458974_SNP [dm3] 3R_13633252_SNP [dm6]	C	T	4.842e^-5	0.461	SYNONYMOUS_CODING CG10841
2R	8129513	2R_8129513_SNP [dm3] 2R_12242008_SNP [dm6]	T	C	4.847e^-5	0.461	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	12785536	3R_12785536_SNP [dm3] 3R_16959814_SNP [dm6]	C	T	4.851e^-5	0.461	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27398046	3R_27398046_SNP [dm3] 3R_31572324_SNP [dm6]	C	G	4.864e^-5	0.461	UTR_5_PRIME gammaCOP INTRON gammaCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	4.888e^-5	0.461	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15734502	2L_15734502_SNP [dm3] 2L_15734502_SNP [dm6]	T	C	4.921e^-5	0.462	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	9731033	3L_9731033_SNP [dm3] 3L_9737933_SNP [dm6]	C	T	5.015e^-5	0.468	INTRON CG42268
2L	14423131	2L_14423131_SNP [dm3] 2L_14423131_SNP [dm6]	A	G	5.045e^-5	0.468	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	5.107e^-5	0.469	INTERGENIC
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	5.140e^-5	0.469	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	18887336	3L_18887336_SNP [dm3] 3L_18894236_SNP [dm6]	A	C	5.147e^-5	0.469	DOWNSTREAM NijB INTRON CG3902
2L	14471373	2L_14471373_INS [dm3] 2L_14471373_INS [dm6]	C	CATA	5.154e^-5	0.469	INTERGENIC
3R	7751030	3R_7751030_SNP [dm3] 3R_11925308_SNP [dm6]	T	A	5.270e^-5	0.473	INTRON Cad87A
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	5.271e^-5	0.473	INTRON dpr10
2R	3340591	2R_3340591_SNP [dm3] 2R_7453086_SNP [dm6]	A	C	5.292e^-5	0.473	DOWNSTREAM CR45320 INTERGENIC
3L	3735781	3L_3735781_SNP [dm3] 3L_3735781_SNP [dm6]	T	A	5.296e^-5	0.473	INTRON CG32264
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	5.341e^-5	0.475	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6509176	3R_6509176_SNP [dm3] 3R_10683454_SNP [dm6]	A	T	5.418e^-5	0.475	INTRON CR44230
2L	12411891	2L_12411891_SNP [dm3] 2L_12411891_SNP [dm6]	G	A	5.470e^-5	0.475	INTRON vir-1
3L	3253006	3L_3253006_SNP [dm3] 3L_3253006_SNP [dm6]	T	A	5.473e^-5	0.475	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11919785	2L_11919785_SNP [dm3] 2L_11919785_SNP [dm6]	T	A	5.478e^-5	0.475	INTRON Pde1c
2L	3002976	2L_3002976_SNP [dm3] 2L_3002976_SNP [dm6]	C	T	5.482e^-5	0.475	INTRON CG17265
3R	6538729	3R_6538729_SNP [dm3] 3R_10713007_SNP [dm6]	A	G	5.523e^-5	0.475	INTERGENIC
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	5.531e^-5	0.475	INTRON grsm
3R	6240000	3R_6240000_SNP [dm3] 3R_10414278_SNP [dm6]	C	T	5.564e^-5	0.475	SYNONYMOUS_CODING CG6345 DOWNSTREAM Rrp46	TF binding site mE1_TFBS_cad
3L	3253001	3L_3253001_SNP [dm3] 3L_3253001_SNP [dm6]	T	A	5.585e^-5	0.475	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	5.601e^-5	0.475	UTR_3_PRIME bol
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	5.646e^-5	0.475	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6283545	3R_6283545_DEL [dm3] 3R_10457823_DEL [dm6]	GC	G	5.692e^-5	0.475	INTERGENIC
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	5.707e^-5	0.475	INTRON Cad87A
3R	23900528	3R_23900528_DEL [dm3] 3R_28074806_DEL [dm6]	GCAAT	G	5.717e^-5	0.475	INTRON CG34362
3R	12629529	3R_12629529_SNP [dm3] 3R_16803807_SNP [dm6]	A	T	5.746e^-5	0.475	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6820480	3L_6820480_SNP [dm3] 3L_6827380_SNP [dm6]	G	C	5.780e^-5	0.475	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3252996	3L_3252996_SNP [dm3] 3L_3252996_SNP [dm6]	A	G	5.817e^-5	0.475	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11882674	3R_11882674_SNP [dm3] 3R_16056952_SNP [dm6]	A	T	5.819e^-5	0.475	INTRON msps
2R	8534715	2R_8534715_SNP [dm3] 2R_12647210_SNP [dm6]	A	G	5.824e^-5	0.475	INTRON CG8785
3R	9793675	3R_9793675_SNP [dm3] 3R_13967953_SNP [dm6]	T	C	5.878e^-5	0.475	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
3L	3253053	3L_3253053_SNP [dm3] 3L_3253053_SNP [dm6]	T	C	5.879e^-5	0.475	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21674793	3R_21674793_SNP [dm3] 3R_25849071_SNP [dm6]	C	T	5.946e^-5	0.478	DOWNSTREAM CR45657 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6545224	3R_6545224_SNP [dm3] 3R_10719502_SNP [dm6]	C	A	5.980e^-5	0.478	INTERGENIC
2R	5016474	2R_5016474_SNP [dm3] 2R_9128969_SNP [dm6]	T	C	5.997e^-5	0.478	INTRON CG18659
2R	5025099	2R_5025099_SNP [dm3] 2R_9137594_SNP [dm6]	G	T	6.042e^-5	0.478	SYNONYMOUS_CODING alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12185514	3L_12185514_SNP [dm3] 3L_12192414_SNP [dm6]	G	T	6.047e^-5	0.478	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
3R	6136985	3R_6136985_SNP [dm3] 3R_10311263_SNP [dm6]	T	C	6.070e^-5	0.478	DOWNSTREAM Bruce INTRON CG6293	TF binding site mE1_TFBS_cad
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	6.107e^-5	0.478	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	6.121e^-5	0.478	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	6.168e^-5	0.48	INTERGENIC
3L	9627249	3L_9627249_SNP [dm3] 3L_9634149_SNP [dm6]	G	A	6.209e^-5	0.481	INTRON fry
3R	6594070	3R_6594070_SNP [dm3] 3R_10768348_SNP [dm6]	G	T	6.231e^-5	0.481	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta	TF binding site mE1_TFBS_HSA
2R	13184380	2R_13184380_SNP [dm3] 2R_17296875_SNP [dm6]	A	T	6.258e^-5	0.481	INTRON mbl
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	6.340e^-5	0.481	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	12578644	2L_12578644_SNP [dm3] 2L_12578644_SNP [dm6]	T	C	6.363e^-5	0.481	INTERGENIC
3L	5361956	3L_5361956_SNP [dm3] 3L_5368856_SNP [dm6]	C	A	6.363e^-5	0.481	UPSTREAM CG10635 & 1 other INTERGENIC
3R	6656056	3R_6656056_SNP [dm3] 3R_10830334_SNP [dm6]	T	C	6.366e^-5	0.481	INTRON Cad86C	TF binding site mE1_TFBS_cad
3R	6498604	3R_6498604_SNP [dm3] 3R_10672882_SNP [dm6]	A	C	6.559e^-5	0.494	INTERGENIC
3R	6545219	3R_6545219_SNP [dm3] 3R_10719497_SNP [dm6]	C	A	6.656e^-5	0.498	INTERGENIC
3L	9594364	3L_9594364_SNP [dm3] 3L_9601264_SNP [dm6]	T	A	6.665e^-5	0.498	SYNONYMOUS_CODING CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
X	16719177	X_16719177_SNP [dm3] X_16825144_SNP [dm6]	C	T	6.705e^-5	0.499	SYNONYMOUS_CODING CG4829
3L	3447433	3L_3447433_SNP [dm3] 3L_3447433_SNP [dm6]	T	A	6.801e^-5	0.502	INTRON eIF5B
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	6.823e^-5	0.502	INTERGENIC
3L	3735803	3L_3735803_SNP [dm3] 3L_3735803_SNP [dm6]	C	A	6.825e^-5	0.502	INTRON CG32264
2R	18575384	2R_18575384_SNP [dm3] 2R_22687879_SNP [dm6]	G	C	6.905e^-5	0.503	SYNONYMOUS_CODING ppa	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	6.980e^-5	0.503	INTRON Octbeta2R
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	6.995e^-5	0.503	INTRON CG3726
2L	15735004	2L_15735004_SNP [dm3] 2L_15735004_SNP [dm6]	A	T	7.073e^-5	0.503	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	16719168	X_16719168_SNP [dm3] X_16825135_SNP [dm6]	C	T	7.088e^-5	0.503	SYNONYMOUS_CODING CG4829
3R	2714565	3R_2714565_SNP [dm3] 3R_6888843_SNP [dm6]	T	A	7.107e^-5	0.503	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18069073	3L_18069073_SNP [dm3] 3L_18075973_SNP [dm6]	G	T	7.150e^-5	0.503	UPSTREAM CR45391 INTERGENIC
3L	3029299	3L_3029299_SNP [dm3] 3L_3029299_SNP [dm6]	T	C	7.157e^-5	0.503	INTERGENIC
3R	7746981	3R_7746981_SNP [dm3] 3R_11921259_SNP [dm6]	C	T	7.248e^-5	0.503	INTRON Cad87A
3R	20115330	3R_20115330_SNP [dm3] 3R_24289608_SNP [dm6]	G	A	7.249e^-5	0.503	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20115336	3R_20115336_SNP [dm3] 3R_24289614_SNP [dm6]	G	C	7.249e^-5	0.503	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2239200	X_2239200_SNP [dm3] X_2345167_SNP [dm6]	G	A	7.255e^-5	0.503	UTR_3_PRIME ptr UPSTREAM mRpL14 DOWNSTREAM ptr	TF binding site BDTNP1_TFBS_Med
2R	7473528	2R_7473528_SNP [dm3] 2R_11586023_SNP [dm6]	G	A	7.265e^-5	0.503	SYNONYMOUS_CODING tou
3R	5305210	3R_5305210_SNP [dm3] 3R_9479488_SNP [dm6]	A	G	7.297e^-5	0.503	INTRON CG16779
3R	13714805	3R_13714805_SNP [dm3] 3R_17889083_SNP [dm6]	T	G	7.320e^-5	0.503	INTRON Rim
3R	14618738	3R_14618738_SNP [dm3] 3R_18793016_SNP [dm6]	A	T	7.321e^-5	0.503	UPSTREAM CG7720 INTRON CG7720
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	7.322e^-5	0.503	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	7.322e^-5	0.503	INTRON salm
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	7.376e^-5	0.504	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	7.442e^-5	0.504	UPSTREAM CG10126 INTERGENIC
3R	7760894	3R_7760894_INS [dm3] 3R_11935172_INS [dm6]	C	CT	7.448e^-5	0.504	INTRON Cad87A
3L	9275222	3L_9275222_SNP [dm3] 3L_9282122_SNP [dm6]	T	G	7.469e^-5	0.504	INTRON GluRIB
2L	5717510	2L_5717510_SNP [dm3] 2L_5717510_SNP [dm6]	G	A	7.496e^-5	0.504	NON_SYNONYMOUS_CODING CG34011 UPSTREAM CG14007 DOWNSTREAM CG11149
3L	7090440	3L_7090440_SNP [dm3] 3L_7097340_SNP [dm6]	G	C	7.577e^-5	0.504	INTRON form3
2L	14950729	2L_14950729_SNP [dm3] 2L_14950729_SNP [dm6]	T	C	7.589e^-5	0.504	INTRON CG42313
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	7.596e^-5	0.504	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	14975079	2L_14975079_SNP [dm3] 2L_14975079_SNP [dm6]	C	G	7.720e^-5	0.504	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16488814	3R_16488814_SNP [dm3] 3R_20663092_SNP [dm6]	A	G	7.831e^-5	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	7.835e^-5	0.504	INTRON salm
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	7.837e^-5	0.504	INTRON Cad87A
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	7.842e^-5	0.504	INTRON CG34355
3R	12629704	3R_12629704_SNP [dm3] 3R_16803982_SNP [dm6]	T	C	7.846e^-5	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18779450	3L_18779450_INS [dm3] 3L_18786350_INS [dm6]	A	AG	7.858e^-5	0.504	INTRON ftz-f1
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	7.889e^-5	0.504	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	8039336	3L_8039336_SNP [dm3] 3L_8046236_SNP [dm6]	T	C	7.900e^-5	0.504	INTRON nmo
3R	24702653	3R_24702653_SNP [dm3] 3R_28876931_SNP [dm6]	G	A	7.902e^-5	0.504	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3252961	3L_3252961_SNP [dm3] 3L_3252961_SNP [dm6]	C	G	7.943e^-5	0.504	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5046805	2R_5046805_SNP [dm3] 2R_9159300_SNP [dm6]	G	A	7.950e^-5	0.504	INTRON CG8008
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	8.024e^-5	0.504	INTRON CG42524
3R	6545300	3R_6545300_SNP [dm3] 3R_10719578_SNP [dm6]	C	T	8.097e^-5	0.504	INTERGENIC
2R	18572163	2R_18572163_SNP [dm3] 2R_22684658_SNP [dm6]	T	G	8.142e^-5	0.504	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12458612	3L_12458612_SNP [dm3] 3L_12465512_SNP [dm6]	G	A	8.160e^-5	0.504	INTRON eyg	TF binding site mE1_TFBS_chinmo
3R	6509171	3R_6509171_SNP [dm3] 3R_10683449_SNP [dm6]	A	G	8.189e^-5	0.504	INTRON CR44230
3R	12631415	3R_12631415_SNP [dm3] 3R_16805693_SNP [dm6]	C	A	8.223e^-5	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14463787	2L_14463787_SNP [dm3] 2L_14463787_SNP [dm6]	A	C	8.252e^-5	0.504	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	8.279e^-5	0.504	INTRON CR45668	TF binding site mE1_TFBS_zfh1
3R	6627156	3R_6627156_SNP [dm3] 3R_10801434_SNP [dm6]	C	A	8.311e^-5	0.504	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	6547403	3R_6547403_SNP [dm3] 3R_10721681_SNP [dm6]	T	A	8.365e^-5	0.504	INTERGENIC
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	8.370e^-5	0.504	INTRON Cad87A
X	2607497	X_2607497_SNP [dm3] X_2713464_SNP [dm6]	C	G	8.373e^-5	0.504	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9870418	3L_9870418_SNP [dm3] 3L_9877318_SNP [dm6]	A	G	8.390e^-5	0.504	DOWNSTREAM CR45406 INTERGENIC
3L	9869577	3L_9869577_SNP [dm3] 3L_9876477_SNP [dm6]	G	A	8.391e^-5	0.504	DOWNSTREAM CR45406 INTERGENIC
3L	3253013	3L_3253013_SNP [dm3] 3L_3253013_SNP [dm6]	A	G	8.403e^-5	0.504	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15735038	2L_15735038_SNP [dm3] 2L_15735038_SNP [dm6]	A	T	8.453e^-5	0.504	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	5048966	2R_5048966_SNP [dm3] 2R_9161461_SNP [dm6]	T	A	8.466e^-5	0.504	UPSTREAM CR44283 & 1 other DOWNSTREAM CG8046 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9364937	2L_9364937_SNP [dm3] 2L_9364937_SNP [dm6]	C	A	8.486e^-5	0.504	EXON CR43404
2L	6306113	2L_6306113_SNP [dm3] 2L_6306113_SNP [dm6]	T	A	8.514e^-5	0.504	INTRON Ddr
X	8562791	X_8562791_SNP [dm3] X_8668758_SNP [dm6]	A	T	8.515e^-5	0.504	INTERGENIC
X	5482481	X_5482481_SNP [dm3] X_5588448_SNP [dm6]	T	G	8.547e^-5	0.504	INTERGENIC
2L	4766048	2L_4766048_SNP [dm3] 2L_4766048_SNP [dm6]	C	A	8.559e^-5	0.504	INTRON CG15630
2L	3031924	2L_3031924_SNP [dm3] 2L_3031924_SNP [dm6]	T	G	8.561e^-5	0.504	DOWNSTREAM CG17258 INTRON GABPI	TF binding site mE1_TFBS_cad
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	8.571e^-5	0.504	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6640523	3R_6640523_SNP [dm3] 3R_10814801_SNP [dm6]	G	T	8.608e^-5	0.504	SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	8.615e^-5	0.504	UTR_3_PRIME CG5278
3L	3446287	3L_3446287_SNP [dm3] 3L_3446287_SNP [dm6]	T	A	8.633e^-5	0.504	INTRON eIF5B
2R	5020072	2R_5020072_SNP [dm3] 2R_9132567_SNP [dm6]	G	T	8.650e^-5	0.504	START_GAINED Hydr1 UTR_5_PRIME Hydr1 UPSTREAM CG18659 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	14673166	3R_14673166_SNP [dm3] 3R_18847444_SNP [dm6]	G	A	8.669e^-5	0.504	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6629539	3R_6629539_SNP [dm3] 3R_10803817_SNP [dm6]	G	A	8.681e^-5	0.504	SYNONYMOUS_CODING CG14692
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	8.912e^-5	0.515	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
X	16035639	X_16035639_SNP [dm3] X_16141606_SNP [dm6]	A	G	8.925e^-5	0.515	INTRON disco-r
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	8.987e^-5	0.517	INTRON nAChRalpha3
2L	14423112	2L_14423112_SNP [dm3] 2L_14423112_SNP [dm6]	G	A	9.087e^-5	0.518	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6219136	3R_6219136_SNP [dm3] 3R_10393414_SNP [dm6]	T	A	9.090e^-5	0.518	INTRON cwo
2L	19897691	2L_19897691_SNP [dm3] 2L_19897691_SNP [dm6]	G	C	9.093e^-5	0.518	INTRON sick
3L	17588943	3L_17588943_SNP [dm3] 3L_17595843_SNP [dm6]	G	T	9.175e^-5	0.518	INTRON Eip74EF
3R	12644906	3R_12644906_SNP [dm3] 3R_16819184_SNP [dm6]	G	A	9.184e^-5	0.518	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
2L	21979204	2L_21979204_SNP [dm3] 2L_21979204_SNP [dm6]	T	A	9.211e^-5	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	9.221e^-5	0.518	SYNONYMOUS_CODING msps
3R	6569164	3R_6569164_SNP [dm3] 3R_10743442_SNP [dm6]	C	T	9.237e^-5	0.518	INTRON TkR86C
3R	24721958	3R_24721958_SNP [dm3] 3R_28896236_SNP [dm6]	C	G	9.270e^-5	0.518	INTRON Doa
2R	10026121	2R_10026121_SNP [dm3] 2R_14138616_SNP [dm6]	C	G	9.276e^-5	0.518	INTRON Prosap	TF binding site mE1_TFBS_cad
3R	6514843	3R_6514843_SNP [dm3] 3R_10689121_SNP [dm6]	T	A	9.338e^-5	0.52	INTRON Skeletor	TF binding site mE1_TFBS_cad
2L	14501241	2L_14501241_SNP [dm3] 2L_14501241_SNP [dm6]	G	A	9.365e^-5	0.52	INTERGENIC
3R	9174258	3R_9174258_SNP [dm3] 3R_13348536_SNP [dm6]	A	T	9.454e^-5	0.523	INTERGENIC
3R	24946433	3R_24946433_SNP [dm3] 3R_29120711_SNP [dm6]	G	C	9.594e^-5	0.525	SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
3L	15043507	3L_15043507_SNP [dm3] 3L_15050407_SNP [dm6]	T	A	9.600e^-5	0.525	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
3R	13040319	3R_13040319_SNP [dm3] 3R_17214597_SNP [dm6]	T	A	9.644e^-5	0.525	INTERGENIC
3R	6582693	3R_6582693_SNP [dm3] 3R_10756971_SNP [dm6]	T	A	9.667e^-5	0.525	INTRON CG31272 EXON CR45015
3R	23121638	3R_23121638_SNP [dm3] 3R_27295916_SNP [dm6]	G	A	9.679e^-5	0.525	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8756850	3L_8756850_INS [dm3] 3L_8763750_INS [dm6]	C	CC	9.686e^-5	0.525	INTRON Fhos
2R	5976584	2R_5976584_DEL [dm3] 2R_10089079_DEL [dm6]	CACA	C	9.702e^-5	0.525	INTRON CG2269
3L	3735797	3L_3735797_SNP [dm3] 3L_3735797_SNP [dm6]	G	A	9.768e^-5	0.525	INTRON CG32264
X	8531911	X_8531911_SNP [dm3] X_8637878_SNP [dm6]	G	A	9.784e^-5	0.525	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2099913	2L_2099913_SNP [dm3] 2L_2099913_SNP [dm6]	C	T	9.793e^-5	0.525	INTRON dpr3
3R	8532736	3R_8532736_SNP [dm3] 3R_12707014_SNP [dm6]	A	T	9.821e^-5	0.525	SPLICE_SITE_REGION mus308 INTRON mus308	TF binding site mE1_TFBS_cad
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	9.877e^-5	0.525	INTRON kek5
2R	8129532	2R_8129532_SNP [dm3] 2R_12242027_SNP [dm6]	G	A	9.884e^-5	0.525	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	6597779	3R_6597779_SNP [dm3] 3R_10772057_SNP [dm6]	C	A	9.903e^-5	0.525	INTRON CG45076	TF binding site mE1_TFBS_cad
3L	14487215	3L_14487215_DEL [dm3] 3L_14494115_DEL [dm6]	CC	C	9.930e^-5	0.525	INTRON bbg
X	16719150	X_16719150_SNP [dm3] X_16825117_SNP [dm6]	G	A	9.960e^-5	0.525	SYNONYMOUS_CODING CG4829
3R	16472762	3R_16472762_SNP [dm3] 3R_20647040_SNP [dm6]	A	G	9.972e^-5	0.525	SYNONYMOUS_CODING GluRIIE
2L	5717451	2L_5717451_SNP [dm3] 2L_5717451_SNP [dm6]	A	T	1.004e^-4	0.527	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	15774763	3L_15774763_SNP [dm3] 3L_15781663_SNP [dm6]	T	C	1.006e^-4	0.527	INTERGENIC
2R	13699956	2R_13699956_SNP [dm3] 2R_17812451_SNP [dm6]	G	A	1.015e^-4	0.528	INTRON grh	TF binding site mE1_TFBS_inv
X	18133937	X_18133937_SNP [dm3] X_18239904_SNP [dm6]	G	A	1.015e^-4	0.528	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19227208	2R_19227208_SNP [dm3] 2R_23339685_SNP [dm6]	T	C	1.017e^-4	0.528	INTERGENIC
X	18132907	X_18132907_SNP [dm3] X_18238874_SNP [dm6]	A	G	1.019e^-4	0.528	INTERGENIC	silencer mE1_HDAC_PRE
3R	22312531	3R_22312531_SNP [dm3] 3R_26486809_SNP [dm6]	T	C	1.022e^-4	0.528	INTRON plum
2L	3031908	2L_3031908_SNP [dm3] 2L_3031908_SNP [dm6]	T	C	1.032e^-4	0.532	DOWNSTREAM CG17258 INTRON GABPI	TF binding site mE1_TFBS_cad
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	1.039e^-4	0.532	INTERGENIC
3R	12633508	3R_12633508_SNP [dm3] 3R_16807786_SNP [dm6]	A	G	1.040e^-4	0.532	UTR_3_PRIME abd-A
3R	6537530	3R_6537530_SNP [dm3] 3R_10711808_SNP [dm6]	T	C	1.042e^-4	0.532	UPSTREAM CG14689 INTERGENIC
3L	13395469	3L_13395469_SNP [dm3] 3L_13402369_SNP [dm6]	G	T	1.048e^-4	0.532	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	6457491	3R_6457491_SNP [dm3] 3R_10631769_SNP [dm6]	A	G	1.052e^-4	0.532	INTRON hth	TF binding site mE1_TFBS_cad
3R	2767568	3R_2767568_SNP [dm3] 3R_6941846_SNP [dm6]	C	T	1.052e^-4	0.532	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8508217	X_8508217_SNP [dm3] X_8614184_SNP [dm6]	A	G	1.056e^-4	0.532	INTERGENIC
2L	10002772	2L_10002772_SNP [dm3] 2L_10002772_SNP [dm6]	T	A	1.057e^-4	0.532	UPSTREAM SoYb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12629847	3R_12629847_SNP [dm3] 3R_16804125_SNP [dm6]	C	A	1.059e^-4	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	1.066e^-4	0.532	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
2L	18127153	2L_18127153_SNP [dm3] 2L_18127153_SNP [dm6]	G	C	1.069e^-4	0.532	INTRON CG5758	TF binding site mE1_TFBS_cad
2L	14975048	2L_14975048_SNP [dm3] 2L_14975048_SNP [dm6]	T	C	1.071e^-4	0.532	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5198177	3R_5198177_SNP [dm3] 3R_9372455_SNP [dm6]	C	T	1.073e^-4	0.532	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
X	2607510	X_2607510_SNP [dm3] X_2713477_SNP [dm6]	G	T	1.077e^-4	0.532	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18133047	X_18133047_SNP [dm3] X_18239014_SNP [dm6]	G	C	1.090e^-4	0.532	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1
X	5482483	X_5482483_SNP [dm3] X_5588450_SNP [dm6]	G	T	1.090e^-4	0.532	INTERGENIC
X	5482484	X_5482484_SNP [dm3] X_5588451_SNP [dm6]	T	A	1.090e^-4	0.532	INTERGENIC
X	5482486	X_5482486_SNP [dm3] X_5588453_SNP [dm6]	T	C	1.090e^-4	0.532	INTERGENIC
3R	6549152	3R_6549152_SNP [dm3] 3R_10723430_SNP [dm6]	A	T	1.092e^-4	0.532	INTERGENIC
3R	8168439	3R_8168439_SNP [dm3] 3R_12342717_SNP [dm6]	A	T	1.093e^-4	0.532	DOWNSTREAM CG44956 INTERGENIC
2L	15651017	2L_15651017_SNP [dm3] 2L_15651017_SNP [dm6]	G	C	1.100e^-4	0.532	INTRON CG4587
3L	3445803	3L_3445803_SNP [dm3] 3L_3445803_SNP [dm6]	G	C	1.106e^-4	0.532	INTRON eIF5B
3L	21654141	3L_21654141_DEL [dm3] 3L_21661041_DEL [dm6]	AA	A	1.108e^-4	0.532	INTRON CG43980
3R	6474640	3R_6474640_SNP [dm3] 3R_10648918_SNP [dm6]	G	T	1.113e^-4	0.532	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	17190466	2R_17190466_SNP [dm3] 2R_21302961_SNP [dm6]	A	G	1.121e^-4	0.532	INTRON CG42672
3R	8151411	3R_8151411_SNP [dm3] 3R_12325689_SNP [dm6]	A	G	1.126e^-4	0.532	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8145258	2R_8145258_SNP [dm3] 2R_12257753_SNP [dm6]	A	G	1.136e^-4	0.532	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
3R	6598001	3R_6598001_SNP [dm3] 3R_10772279_SNP [dm6]	G	T	1.141e^-4	0.532	NON_SYNONYMOUS_CODING CG45076 DOWNSTREAM fau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8607331	2R_8607331_SNP [dm3] 2R_12719826_SNP [dm6]	A	G	1.144e^-4	0.532	INTRON CG42663
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	1.147e^-4	0.532	INTRON nAChRalpha3
X	7802696	X_7802696_SNP [dm3] X_7908663_SNP [dm6]	T	A	1.150e^-4	0.532	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8607236	2R_8607236_MNP [dm3] 2R_12719731_MNP [dm6]	GTT	AAC	1.156e^-4	0.532	INTRON CG42663
2L	14423141	2L_14423141_SNP [dm3] 2L_14423141_SNP [dm6]	T	C	1.156e^-4	0.532	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	1.158e^-4	0.532	INTRON capu	TF binding site mE1_TFBS_bab1
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	1.159e^-4	0.532	INTRON CG42663
2L	17213606	2L_17213606_SNP [dm3] 2L_17213606_SNP [dm6]	C	T	1.161e^-4	0.532	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14471363	2L_14471363_MNP [dm3] 2L_14471363_MNP [dm6]	ATT	CCA	1.162e^-4	0.532	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	528267	2L_528267_SNP [dm3] 2L_528267_SNP [dm6]	T	A	1.164e^-4	0.532	INTRON ush	regulatory region REDfly_CRMs
3L	9857487	3L_9857487_SNP [dm3] 3L_9864387_SNP [dm6]	A	T	1.164e^-4	0.532	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9857494	3L_9857494_SNP [dm3] 3L_9864394_SNP [dm6]	G	A	1.164e^-4	0.532	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	1.165e^-4	0.532	INTRON msps
3R	10634133	3R_10634133_SNP [dm3] 3R_14808411_SNP [dm6]	G	A	1.168e^-4	0.532	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12464851	3L_12464851_INS [dm3] 3L_12471751_INS [dm6]	G	GG	1.173e^-4	0.532	UTR_5_PRIME CG10616	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	11882689	3R_11882689_SNP [dm3] 3R_16056967_SNP [dm6]	T	A	1.175e^-4	0.532	INTRON msps
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	1.177e^-4	0.532	UPSTREAM CR45374 INTERGENIC
3R	10634088	3R_10634088_SNP [dm3] 3R_14808366_SNP [dm6]	A	C	1.178e^-4	0.532	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	17317719	3R_17317719_SNP [dm3] 3R_21491997_SNP [dm6]	C	T	1.181e^-4	0.532	INTERGENIC
3R	8976262	3R_8976262_SNP [dm3] 3R_13150540_SNP [dm6]	A	T	1.183e^-4	0.532	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	5030388	2R_5030388_SNP [dm3] 2R_9142883_SNP [dm6]	C	T	1.184e^-4	0.532	SYNONYMOUS_CODING shrb DOWNSTREAM CG8788 & 1 other	TF binding site mE1_TFBS_sens
3R	9459061	3R_9459061_SNP [dm3] 3R_13633339_SNP [dm6]	G	C	1.188e^-4	0.532	SYNONYMOUS_CODING CG10841
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	1.190e^-4	0.532	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	1.191e^-4	0.532	INTRON Cad87A
X	6409874	X_6409874_SNP [dm3] X_6515841_SNP [dm6]	A	C	1.194e^-4	0.532	INTRON CG42340
3L	12185838	3L_12185838_SNP [dm3] 3L_12192738_SNP [dm6]	G	A	1.194e^-4	0.532	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
2L	14471369	2L_14471369_SNP [dm3] 2L_14471369_SNP [dm6]	T	A	1.198e^-4	0.532	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8363127	3R_8363127_SNP [dm3] 3R_12537405_SNP [dm6]	A	G	1.202e^-4	0.532	INTRON Octbeta3R
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	1.205e^-4	0.532	DOWNSTREAM PpN58A INTRON Fili
2L	9433016	2L_9433016_SNP [dm3] 2L_9433016_SNP [dm6]	G	T	1.205e^-4	0.532	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10065597	2L_10065597_INS [dm3] 2L_10065597_INS [dm6]	T	TCGACACTTTTT...	1.208e^-4	0.532	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27081739	3R_27081739_SNP [dm3] 3R_31256017_SNP [dm6]	G	A	1.210e^-4	0.532	INTRON spn-F	TF binding site mE1_TFBS_cad
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	1.214e^-4	0.532	INTRON CG33144
2R	17768964	2R_17768964_SNP [dm3] 2R_21881459_SNP [dm6]	C	T	1.217e^-4	0.532	UTR_3_PRIME PpN58A INTRON Fili
X	5052127	X_5052127_SNP [dm3] X_5158094_SNP [dm6]	C	A	1.218e^-4	0.532	INTRON rg & 1 other
2R	17078662	2R_17078662_SNP [dm3] 2R_21191157_SNP [dm6]	G	A	1.220e^-4	0.532	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1942094	X_1942094_SNP [dm3] X_2048061_SNP [dm6]	T	C	1.220e^-4	0.532	INTRON CG4313 & 1 other
X	1942100	X_1942100_MNP [dm3] X_2048067_MNP [dm6]	CTACAT	TCTTGA	1.220e^-4	0.532	INTRON CG4313 & 1 other
3R	7757573	3R_7757573_SNP [dm3] 3R_11931851_SNP [dm6]	C	G	1.226e^-4	0.534	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
2R	14985648	2R_14985648_SNP [dm3] 2R_19098143_SNP [dm6]	T	C	1.235e^-4	0.536	INTRON 5-HT1A
3L	5952159	3L_5952159_SNP [dm3] 3L_5959059_SNP [dm6]	T	C	1.243e^-4	0.537	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11266735	3L_11266735_SNP [dm3] 3L_11273635_SNP [dm6]	C	T	1.246e^-4	0.537	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11882859	3R_11882859_DEL [dm3] 3R_16057137_DEL [dm6]	TCTTCTACCGT...	T	1.248e^-4	0.537	INTRON msps
3R	25654913	3R_25654913_SNP [dm3] 3R_29829191_SNP [dm6]	C	A	1.249e^-4	0.537	INTRON Atg16	enhancer mE1_CBP_Enhancers
3R	23122439	3R_23122439_SNP [dm3] 3R_27296717_SNP [dm6]	T	G	1.250e^-4	0.537	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3028059	2L_3028059_SNP [dm3] 2L_3028059_SNP [dm6]	C	T	1.255e^-4	0.537	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3252947	3L_3252947_SNP [dm3] 3L_3252947_SNP [dm6]	A	G	1.268e^-4	0.541	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	1.271e^-4	0.541	INTERGENIC
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	1.273e^-4	0.541	INTRON GlcAT-P
3L	5361750	3L_5361750_SNP [dm3] 3L_5368650_SNP [dm6]	G	A	1.278e^-4	0.543	UPSTREAM CG10635 & 1 other INTERGENIC
3R	2221938	3R_2221938_SNP [dm3] 3R_6396216_SNP [dm6]	C	T	1.283e^-4	0.543	INTRON Dmtn
3L	17338626	3L_17338626_SNP [dm3] 3L_17345526_SNP [dm6]	A	G	1.290e^-4	0.543	SYNONYMOUS_CODING Mip UPSTREAM brv2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3017867	2L_3017867_SNP [dm3] 2L_3017867_SNP [dm6]	T	G	1.291e^-4	0.543	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
3L	937880	3L_937880_SNP [dm3] 3L_937880_SNP [dm6]	G	A	1.293e^-4	0.543	INTRON Glut1
3R	13040350	3R_13040350_SNP [dm3] 3R_17214628_SNP [dm6]	T	A	1.295e^-4	0.543	INTERGENIC
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	1.302e^-4	0.545	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6547438	3R_6547438_SNP [dm3] 3R_10721716_SNP [dm6]	T	A	1.304e^-4	0.545	INTERGENIC
3R	9458962	3R_9458962_SNP [dm3] 3R_13633240_SNP [dm6]	C	T	1.308e^-4	0.545	SYNONYMOUS_CODING CG10841
3L	3447283	3L_3447283_SNP [dm3] 3L_3447283_SNP [dm6]	T	A	1.314e^-4	0.545	INTRON eIF5B
3L	6820495	3L_6820495_SNP [dm3] 3L_6827395_SNP [dm6]	T	C	1.316e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21619953	3L_21619953_SNP [dm3] 3L_21626853_SNP [dm6]	A	G	1.321e^-4	0.545	INTRON CG11306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	12678023	3R_12678023_SNP [dm3] 3R_16852301_SNP [dm6]	T	G	1.322e^-4	0.545	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1942090	X_1942090_DEL [dm3] X_2048057_DEL [dm6]	TA	T	1.325e^-4	0.545	INTRON CG4313 & 1 other
2L	15473950	2L_15473950_SNP [dm3] 2L_15473950_SNP [dm6]	A	G	1.327e^-4	0.545	INTERGENIC	regulatory region REDfly_CRMs
3R	25161258	3R_25161258_SNP [dm3] 3R_29335536_SNP [dm6]	G	C	1.328e^-4	0.545	INTERGENIC
2L	11786248	2L_11786248_SNP [dm3] 2L_11786248_SNP [dm6]	G	A	1.345e^-4	0.551	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	1.348e^-4	0.551	INTRON fru
3R	11882771	3R_11882771_SNP [dm3] 3R_16057049_SNP [dm6]	G	C	1.351e^-4	0.551	INTRON msps
3R	12632430	3R_12632430_SNP [dm3] 3R_16806708_SNP [dm6]	C	T	1.354e^-4	0.551	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
2L	16863957	2L_16863957_SNP [dm3] 2L_16863957_SNP [dm6]	A	C	1.358e^-4	0.551	INTERGENIC
3R	6577663	3R_6577663_SNP [dm3] 3R_10751941_SNP [dm6]	C	T	1.367e^-4	0.551	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3R	6279270	3R_6279270_SNP [dm3] 3R_10453548_SNP [dm6]	T	G	1.370e^-4	0.551	INTERGENIC
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.375e^-4	0.551	INTERGENIC
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	1.377e^-4	0.551	INTRON CG7985
2R	8607328	2R_8607328_SNP [dm3] 2R_12719823_SNP [dm6]	T	G	1.379e^-4	0.551	INTRON CG42663
2R	18574299	2R_18574299_SNP [dm3] 2R_22686794_SNP [dm6]	A	T	1.380e^-4	0.551	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	1.397e^-4	0.551	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	8682632	3R_8682632_SNP [dm3] 3R_12856910_SNP [dm6]	T	A	1.397e^-4	0.551	INTRON CG10126
3L	15447645	3L_15447645_SNP [dm3] 3L_15454545_SNP [dm6]	C	A	1.399e^-4	0.551	INTERGENIC
3R	8232862	3R_8232862_SNP [dm3] 3R_12407140_SNP [dm6]	C	T	1.403e^-4	0.551	SYNONYMOUS_CODING CG5167	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	1.405e^-4	0.551	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	15734545	2L_15734545_SNP [dm3] 2L_15734545_SNP [dm6]	T	A	1.407e^-4	0.551	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	9605920	3L_9605920_SNP [dm3] 3L_9612820_SNP [dm6]	G	A	1.411e^-4	0.551	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13184427	2R_13184427_SNP [dm3] 2R_17296922_SNP [dm6]	T	A	1.411e^-4	0.551	INTRON mbl
2L	17696497	2L_17696497_SNP [dm3] 2L_17696497_SNP [dm6]	C	T	1.414e^-4	0.551	INTRON CadN
3R	12712308	3R_12712308_SNP [dm3] 3R_16886586_SNP [dm6]	T	G	1.414e^-4	0.551	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	15774762	3L_15774762_SNP [dm3] 3L_15781662_SNP [dm6]	G	T	1.415e^-4	0.551	INTERGENIC
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	1.418e^-4	0.551	UPSTREAM CG10635 & 1 other INTERGENIC
3R	25654908	3R_25654908_SNP [dm3] 3R_29829186_SNP [dm6]	G	T	1.418e^-4	0.551	INTRON Atg16	enhancer mE1_CBP_Enhancers
3R	5480312	3R_5480312_SNP [dm3] 3R_9654590_SNP [dm6]	G	A	1.420e^-4	0.551	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
2R	11379158	2R_11379158_SNP [dm3] 2R_15491653_SNP [dm6]	A	T	1.421e^-4	0.551	INTRON CG12964
X	1942085	X_1942085_SNP [dm3] X_2048052_SNP [dm6]	C	G	1.421e^-4	0.551	INTRON CG4313 & 1 other
3R	11882758	3R_11882758_SNP [dm3] 3R_16057036_SNP [dm6]	C	A	1.425e^-4	0.551	INTRON msps
2R	8140764	2R_8140764_SNP [dm3] 2R_12253259_SNP [dm6]	C	T	1.428e^-4	0.551	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9628674	3L_9628674_SNP [dm3] 3L_9635574_SNP [dm6]	T	C	1.435e^-4	0.552	INTRON fry
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	1.440e^-4	0.552	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	17596410	3R_17596410_SNP [dm3] 3R_21770688_SNP [dm6]	G	A	1.446e^-4	0.552	SYNONYMOUS_CODING GABA-B-R2 DOWNSTREAM Burs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9627291	3L_9627291_SNP [dm3] 3L_9634191_SNP [dm6]	G	T	1.453e^-4	0.552	INTRON fry
2L	11919178	2L_11919178_SNP [dm3] 2L_11919178_SNP [dm6]	A	T	1.458e^-4	0.552	INTRON Pde1c
X	7802214	X_7802214_SNP [dm3] X_7908181_SNP [dm6]	C	T	1.459e^-4	0.552	UTR_5_PRIME dpr14 UPSTREAM dpr14 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	15093262	3R_15093262_INS [dm3] 3R_19267540_INS [dm6]	A	ACTAA	1.461e^-4	0.552	INTERGENIC
3R	27402906	3R_27402906_SNP [dm3] 3R_31577184_SNP [dm6]	G	T	1.475e^-4	0.552	INTRON pygo
X	14752040	X_14752040_SNP [dm3] X_14858007_SNP [dm6]	A	C	1.476e^-4	0.552	INTRON Flo2
X	4211622	X_4211622_SNP [dm3] X_4317589_SNP [dm6]	G	A	1.479e^-4	0.552	INTRON mei-9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	937879	3L_937879_SNP [dm3] 3L_937879_SNP [dm6]	A	G	1.480e^-4	0.552	INTRON Glut1
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	1.484e^-4	0.552	INTERGENIC
X	1942097	X_1942097_SNP [dm3] X_2048064_SNP [dm6]	T	A	1.484e^-4	0.552	INTRON CG4313 & 1 other
3R	10634074	3R_10634074_SNP [dm3] 3R_14808352_SNP [dm6]	A	T	1.487e^-4	0.552	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9251810	3R_9251810_DEL [dm3] 3R_13426088_DEL [dm6]	TT	T	1.488e^-4	0.552	UPSTREAM Act87E INTRON Act87E EXON CR45591	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6286616	3R_6286616_SNP [dm3] 3R_10460894_SNP [dm6]	T	C	1.497e^-4	0.552	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12184966	3L_12184966_SNP [dm3] 3L_12191866_SNP [dm6]	G	T	1.498e^-4	0.552	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM thoc6
3R	14299099	3R_14299099_SNP [dm3] 3R_18473377_SNP [dm6]	T	A	1.499e^-4	0.552	INTRON fru
2L	14463801	2L_14463801_SNP [dm3] 2L_14463801_SNP [dm6]	G	A	1.502e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
X	1942088	X_1942088_SNP [dm3] X_2048055_SNP [dm6]	C	G	1.503e^-4	0.552	INTRON CG4313 & 1 other
3R	27383678	3R_27383678_SNP [dm3] 3R_31557956_SNP [dm6]	T	C	1.503e^-4	0.552	INTRON nyo
X	5482435	X_5482435_SNP [dm3] X_5588402_SNP [dm6]	C	T	1.504e^-4	0.552	INTERGENIC
2R	13145235	2R_13145235_SNP [dm3] 2R_17257730_SNP [dm6]	T	A	1.509e^-4	0.552	INTRON mbl & 1 other
2L	13842794	2L_13842794_SNP [dm3] 2L_13842794_SNP [dm6]	C	T	1.512e^-4	0.552	DOWNSTREAM CG33306 INTRON CenG1A
3R	7988098	3R_7988098_SNP [dm3] 3R_12162376_SNP [dm6]	G	T	1.514e^-4	0.552	DOWNSTREAM Cpn INTERGENIC
3L	752862	3L_752862_DEL [dm3] 3L_752862_DEL [dm6]	TGGAA	T	1.514e^-4	0.552	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	24947652	3R_24947652_SNP [dm3] 3R_29121930_SNP [dm6]	A	G	1.523e^-4	0.552	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7990775	3L_7990775_SNP [dm3] 3L_7997675_SNP [dm6]	C	T	1.524e^-4	0.552	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	22938942	3R_22938942_SNP [dm3] 3R_27113220_SNP [dm6]	G	A	1.524e^-4	0.552	SYNONYMOUS_CODING CG5815 UPSTREAM gb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	6573840	3R_6573840_SNP [dm3] 3R_10748118_SNP [dm6]	T	G	1.524e^-4	0.552	INTRON TkR86C
2L	14471284	2L_14471284_SNP [dm3] 2L_14471284_SNP [dm6]	A	T	1.529e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	1.540e^-4	0.552	UPSTREAM CG10635 & 1 other INTERGENIC
3R	14299097	3R_14299097_SNP [dm3] 3R_18473375_SNP [dm6]	C	T	1.542e^-4	0.552	INTRON fru
3R	16998402	3R_16998402_SNP [dm3] 3R_21172680_SNP [dm6]	G	T	1.543e^-4	0.552	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3252999	3L_3252999_SNP [dm3] 3L_3252999_SNP [dm6]	T	A	1.548e^-4	0.552	DOWNSTREAM CR43626 EXON CR43626	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7474290	2R_7474290_SNP [dm3] 2R_11586785_SNP [dm6]	G	T	1.549e^-4	0.552	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_sens
2L	2611942	2L_2611942_SNP [dm3] 2L_2611942_SNP [dm6]	A	T	1.554e^-4	0.552	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	1.557e^-4	0.552	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	16981470	3L_16981470_SNP [dm3] 3L_16988370_SNP [dm6]	A	T	1.558e^-4	0.552	INTRON Exn
2R	15320320	2R_15320320_SNP [dm3] 2R_19432815_SNP [dm6]	T	A	1.558e^-4	0.552	SYNONYMOUS_CODING Fak INTRON Fak
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	1.559e^-4	0.552	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	6593889	3R_6593889_SNP [dm3] 3R_10768167_SNP [dm6]	T	C	1.562e^-4	0.552	UTR_3_PRIME CG45076 UPSTREAM TfIIFbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	1.564e^-4	0.552	INTERGENIC
3R	6545163	3R_6545163_INS [dm3] 3R_10719441_INS [dm6]	G	TTGACCTTT	1.569e^-4	0.552	INTERGENIC
3L	4652284	3L_4652284_SNP [dm3] 3L_4652284_SNP [dm6]	T	G	1.570e^-4	0.552	INTRON axo
3L	920537	3L_920537_SNP [dm3] 3L_920537_SNP [dm6]	T	G	1.574e^-4	0.552	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14471370	2L_14471370_SNP [dm3] 2L_14471370_SNP [dm6]	A	T	1.575e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8129551	2R_8129551_SNP [dm3] 2R_12242046_SNP [dm6]	C	A	1.577e^-4	0.552	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129488	2R_8129488_INS [dm3] 2R_12241983_INS [dm6]	A	TC	1.579e^-4	0.552	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	12710993	3L_12710993_SNP [dm3] 3L_12717893_SNP [dm6]	A	T	1.585e^-4	0.552	INTERGENIC
3L	12458614	3L_12458614_SNP [dm3] 3L_12465514_SNP [dm6]	A	C	1.589e^-4	0.552	INTRON eyg	TF binding site mE1_TFBS_chinmo
X	18821464	X_18821464_SNP [dm3] X_18927431_SNP [dm6]	T	G	1.589e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7727619	3R_7727619_SNP [dm3] 3R_11901897_SNP [dm6]	G	A	1.594e^-4	0.552	SYNONYMOUS_CODING Cad87A
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	1.598e^-4	0.552	UTR_3_PRIME Ack DOWNSTREAM Chd64
3L	1555117	3L_1555117_SNP [dm3] 3L_1555117_SNP [dm6]	C	T	1.602e^-4	0.552	SYNONYMOUS_CODING Cct2 DOWNSTREAM CG12099	TF binding site mE1_TFBS_cad
3R	6587608	3R_6587608_SNP [dm3] 3R_10761886_SNP [dm6]	A	G	1.602e^-4	0.552	NON_SYNONYMOUS_CODING Cap-H2 UTR_5_PRIME Cap-H2 UPSTREAM MED7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	1.603e^-4	0.552	INTRON Cad87A
3R	11882770	3R_11882770_SNP [dm3] 3R_16057048_SNP [dm6]	T	A	1.606e^-4	0.552	INTRON msps
3R	24702186	3R_24702186_SNP [dm3] 3R_28876464_SNP [dm6]	A	G	1.608e^-4	0.552	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7918169	3R_7918169_SNP [dm3] 3R_12092447_SNP [dm6]	C	A	1.617e^-4	0.552	INTERGENIC
3R	6565953	3R_6565953_SNP [dm3] 3R_10740231_SNP [dm6]	G	A	1.620e^-4	0.552	INTRON TkR86C
3R	8357927	3R_8357927_SNP [dm3] 3R_12532205_SNP [dm6]	T	C	1.622e^-4	0.552	INTRON Octbeta3R
2L	14436439	2L_14436439_SNP [dm3] 2L_14436439_SNP [dm6]	T	C	1.630e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	8987480	3R_8987480_SNP [dm3] 3R_13161758_SNP [dm6]	G	C	1.634e^-4	0.552	INTRON timeout
2R	5060931	2R_5060931_SNP [dm3] 2R_9173426_SNP [dm6]	G	A	1.634e^-4	0.552	SYNONYMOUS_CODING Rme-8
X	14062596	X_14062596_SNP [dm3] X_14168563_SNP [dm6]	T	A	1.635e^-4	0.552	INTERGENIC
X	7803609	X_7803609_DEL [dm3] X_7909576_DEL [dm6]	CGGAAACGGGGTCGATTC...	C	1.637e^-4	0.552	INTRON CG1444	TF binding site BDTNP1_TFBS_dl
3R	8194981	3R_8194981_DEL [dm3] 3R_12369259_DEL [dm6]	ACTGAACGGAATTCGAAGAG...	A	1.638e^-4	0.552	UTR_5_PRIME GstD1 UPSTREAM GstD1 INTRAGENIC GstD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9591534	2R_9591534_SNP [dm3] 2R_13704029_SNP [dm6]	T	C	1.643e^-4	0.552	INTRON fas
2R	9968957	2R_9968957_SNP [dm3] 2R_14081452_SNP [dm6]	G	A	1.646e^-4	0.552	INTRON Prosap
3R	14299157	3R_14299157_SNP [dm3] 3R_18473435_SNP [dm6]	A	G	1.650e^-4	0.552	INTRON fru
X	8418425	X_8418425_SNP [dm3] X_8524392_SNP [dm6]	G	T	1.657e^-4	0.552	DOWNSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13213960	3L_13213960_SNP [dm3] 3L_13220860_SNP [dm6]	G	C	1.665e^-4	0.552	INTERGENIC
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	1.672e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13464214	3L_13464214_SNP [dm3] 3L_13471114_SNP [dm6]	T	G	1.672e^-4	0.552	INTRON CG10089	TF binding site mE1_TFBS_cad
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	1.677e^-4	0.552	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	13184702	2R_13184702_DEL [dm3] 2R_17297197_DEL [dm6]	GTG	G	1.679e^-4	0.552	INTRON mbl
3R	14506498	3R_14506498_SNP [dm3] 3R_18680776_SNP [dm6]	A	G	1.680e^-4	0.552	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
2L	1176899	2L_1176899_SNP [dm3] 2L_1176899_SNP [dm6]	G	A	1.681e^-4	0.552	UPSTREAM CG4896 INTRON CG4887	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5059503	2R_5059503_SNP [dm3] 2R_9171998_SNP [dm6]	A	C	1.681e^-4	0.552	SYNONYMOUS_CODING Rme-8
3R	8327259	3R_8327259_SNP [dm3] 3R_12501537_SNP [dm6]	A	C	1.688e^-4	0.552	UPSTREAM Hsp70Bbb INTERGENIC	transposable element FlyBase
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	1.690e^-4	0.552	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
X	7803518	X_7803518_SNP [dm3] X_7909485_SNP [dm6]	C	G	1.693e^-4	0.552	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	1.697e^-4	0.552	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	7727598	3R_7727598_SNP [dm3] 3R_11901876_SNP [dm6]	T	C	1.698e^-4	0.552	SYNONYMOUS_CODING Cad87A
2L	12397532	2L_12397532_INS [dm3] 2L_12397532_INS [dm6]	T	TGTAA	1.698e^-4	0.552	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2R	8129484	2R_8129484_INS [dm3] 2R_12241979_INS [dm6]	C	AATTTTTTATAAG...	1.700e^-4	0.552	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	8785260	3R_8785260_SNP [dm3] 3R_12959538_SNP [dm6]	G	T	1.706e^-4	0.552	SYNONYMOUS_CODING grsm	TF binding site mE1_TFBS_cad
2R	8143235	2R_8143235_SNP [dm3] 2R_12255730_SNP [dm6]	T	A	1.706e^-4	0.552	DOWNSTREAM CG13168 INTERGENIC
3L	15460631	3L_15460631_SNP [dm3] 3L_15467531_SNP [dm6]	C	A	1.710e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17262606	2R_17262606_SNP [dm3] 2R_21375101_SNP [dm6]	G	A	1.714e^-4	0.552	INTRON cv-2
3R	11883481	3R_11883481_SNP [dm3] 3R_16057759_SNP [dm6]	T	C	1.718e^-4	0.552	SYNONYMOUS_CODING msps
2R	10029486	2R_10029486_SNP [dm3] 2R_14141981_SNP [dm6]	A	C	1.721e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	8618594	X_8618594_SNP [dm3] X_8724561_SNP [dm6]	C	T	1.723e^-4	0.552	UPSTREAM CR43297 INTERGENIC
3R	9580058	3R_9580058_SNP [dm3] 3R_13754336_SNP [dm6]	A	G	1.725e^-4	0.552	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14997364	3R_14997364_SNP [dm3] 3R_19171642_SNP [dm6]	A	T	1.733e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	1.734e^-4	0.552	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20222349	2R_20222349_SNP [dm3] 2R_24334826_SNP [dm6]	C	G	1.735e^-4	0.552	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	1.740e^-4	0.552	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11473181	2R_11473181_SNP [dm3] 2R_15585676_SNP [dm6]	A	G	1.745e^-4	0.552	INTERGENIC
2R	17654405	2R_17654405_SNP [dm3] 2R_21766900_SNP [dm6]	G	A	1.747e^-4	0.552	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
X	15875579	X_15875579_SNP [dm3] X_15981546_SNP [dm6]	C	T	1.748e^-4	0.552	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	1.748e^-4	0.552	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
X	12692622	X_12692622_SNP [dm3] X_12798589_SNP [dm6]	C	T	1.751e^-4	0.552	INTRON Pde9
3R	6201273	3R_6201273_SNP [dm3] 3R_10375551_SNP [dm6]	G	C	1.755e^-4	0.552	INTRON Rfx	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7802793	X_7802793_SNP [dm3] X_7908760_SNP [dm6]	A	T	1.756e^-4	0.552	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6550478	3R_6550478_SNP [dm3] 3R_10724756_SNP [dm6]	T	A	1.756e^-4	0.552	INTERGENIC
2L	18130152	2L_18130152_SNP [dm3] 2L_18130152_SNP [dm6]	T	A	1.763e^-4	0.552	UTR_3_PRIME kel DOWNSTREAM CG5758
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	1.767e^-4	0.552	INTERGENIC
2L	3880414	2L_3880414_SNP [dm3] 2L_3880414_SNP [dm6]	A	G	1.767e^-4	0.552	UPSTREAM capu INTRON capu
3R	24702567	3R_24702567_SNP [dm3] 3R_28876845_SNP [dm6]	C	T	1.769e^-4	0.552	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8882636	2L_8882636_SNP [dm3] 2L_8882636_SNP [dm6]	A	T	1.770e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_cnc
X	8562772	X_8562772_SNP [dm3] X_8668739_SNP [dm6]	C	T	1.770e^-4	0.552	INTERGENIC
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	1.772e^-4	0.552	INTRON mAChR-A	TF binding site mE1_TFBS_cad
2R	19687345	2R_19687345_SNP [dm3] 2R_23799822_SNP [dm6]	T	C	1.777e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6905223	X_6905223_SNP [dm3] X_7011190_SNP [dm6]	G	A	1.779e^-4	0.552	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6571755	3R_6571755_SNP [dm3] 3R_10746033_SNP [dm6]	C	T	1.779e^-4	0.552	INTRON TkR86C
X	6351608	X_6351608_DEL [dm3] X_6457575_DEL [dm6]	CC	C	1.780e^-4	0.552	INTRON CG42340
3R	6219236	3R_6219236_SNP [dm3] 3R_10393514_SNP [dm6]	G	A	1.782e^-4	0.552	INTRON cwo
2L	15647752	2L_15647752_SNP [dm3] 2L_15647752_SNP [dm6]	G	A	1.785e^-4	0.552	UTR_3_PRIME CG4587
3R	8164413	3R_8164413_SNP [dm3] 3R_12338691_SNP [dm6]	A	C	1.789e^-4	0.552	INTRON CR44941
3L	12163754	3L_12163754_INS [dm3] 3L_12170654_INS [dm6]	T	TT	1.792e^-4	0.552	INTRON Rh7
3L	14581209	3L_14581209_SNP [dm3] 3L_14588109_SNP [dm6]	C	T	1.793e^-4	0.552	INTRON HGTX	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	1.796e^-4	0.552	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	1.804e^-4	0.552	INTRON sNPF
2L	14975061	2L_14975061_SNP [dm3] 2L_14975061_SNP [dm6]	T	C	1.804e^-4	0.552	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	1.806e^-4	0.552	INTRON Fhos
3R	17317385	3R_17317385_SNP [dm3] 3R_21491663_SNP [dm6]	C	G	1.814e^-4	0.552	INTERGENIC
3R	22328055	3R_22328055_SNP [dm3] 3R_26502333_SNP [dm6]	C	T	1.814e^-4	0.552	INTRON plum
3R	6484686	3R_6484686_SNP [dm3] 3R_10658964_SNP [dm6]	A	G	1.816e^-4	0.552	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4651572	3L_4651572_SNP [dm3] 3L_4651572_SNP [dm6]	A	G	1.818e^-4	0.552	INTRON axo
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.821e^-4	0.552	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	6640823	3R_6640823_DEL [dm3] 3R_10815101_DEL [dm6]	GGCTCTAAG	G	1.821e^-4	0.552	UPSTREAM CG4089 & 1 other INTERGENIC
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	1.829e^-4	0.552	DOWNSTREAM CG10185 INTRON msps
3R	9041529	3R_9041529_SNP [dm3] 3R_13215807_SNP [dm6]	G	C	1.831e^-4	0.552	INTERGENIC
X	14062590	X_14062590_SNP [dm3] X_14168557_SNP [dm6]	T	A	1.831e^-4	0.552	INTERGENIC
2L	3017922	2L_3017922_SNP [dm3] 2L_3017922_SNP [dm6]	A	T	1.835e^-4	0.553	UPSTREAM CG17264 INTRON CG17224	TF binding site BDTNP1_TFBS_twi
3R	3480855	3R_3480855_SNP [dm3] 3R_7655133_SNP [dm6]	T	C	1.840e^-4	0.553	INTERGENIC
2L	11124605	2L_11124605_SNP [dm3] 2L_11124605_SNP [dm6]	T	G	1.845e^-4	0.553	NON_SYNONYMOUS_CODING Nup160	TF binding site mE1_TFBS_sens
2R	19502356	2R_19502356_SNP [dm3] 2R_23614833_SNP [dm6]	C	T	1.846e^-4	0.553	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	8949470	X_8949470_SNP [dm3] X_9055437_SNP [dm6]	T	G	1.849e^-4	0.553	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
2R	9922327	2R_9922327_SNP [dm3] 2R_14034822_SNP [dm6]	G	A	1.862e^-4	0.555	INTRON mam
2L	3019263	2L_3019263_SNP [dm3] 2L_3019263_SNP [dm6]	G	T	1.878e^-4	0.555	NON_SYNONYMOUS_CODING CG17264 UPSTREAM CG17224	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	1.892e^-4	0.555	INTRON CG15630
2R	11515915	2R_11515915_SNP [dm3] 2R_15628410_SNP [dm6]	A	T	1.893e^-4	0.555	INTRON CG42524
3R	23122562	3R_23122562_SNP [dm3] 3R_27296840_SNP [dm6]	C	T	1.902e^-4	0.555	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	1.902e^-4	0.555	INTERGENIC
3R	6627190	3R_6627190_SNP [dm3] 3R_10801468_SNP [dm6]	T	C	1.906e^-4	0.555	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8588079	3R_8588079_SNP [dm3] 3R_12762357_SNP [dm6]	C	T	1.908e^-4	0.555	INTRON beat-Vc
3L	20932715	3L_20932715_SNP [dm3] 3L_20939615_SNP [dm6]	C	T	1.909e^-4	0.555	INTRON fng
3R	26927054	3R_26927054_SNP [dm3] 3R_31101332_SNP [dm6]	G	T	1.911e^-4	0.555	UPSTREAM CG15553 INTERGENIC
3L	14581113	3L_14581113_SNP [dm3] 3L_14588013_SNP [dm6]	G	A	1.912e^-4	0.555	INTRON HGTX	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11719649	3R_11719649_SNP [dm3] 3R_15893927_SNP [dm6]	A	G	1.914e^-4	0.555	INTRON CG14877
3R	2818182	3R_2818182_SNP [dm3] 3R_6992460_SNP [dm6]	G	A	1.921e^-4	0.555	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6545196	3R_6545196_DEL [dm3] 3R_10719474_DEL [dm6]	CTTCTCC	C	1.925e^-4	0.555	INTERGENIC
3L	13466794	3L_13466794_SNP [dm3] 3L_13473694_SNP [dm6]	G	C	1.925e^-4	0.555	INTRON CG10089
2L	9432470	2L_9432470_SNP [dm3] 2L_9432470_SNP [dm6]	C	T	1.926e^-4	0.555	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12679293	3R_12679293_SNP [dm3] 3R_16853571_SNP [dm6]	G	A	1.927e^-4	0.555	INTRON iab-8 & 1 other EXON iab-4	TF binding site mE1_TFBS_cad
3R	12629538	3R_12629538_SNP [dm3] 3R_16803816_SNP [dm6]	G	A	1.930e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2608334	3L_2608334_SNP [dm3] 3L_2608334_SNP [dm6]	G	A	1.934e^-4	0.555	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3422445	X_3422445_SNP [dm3] X_3528412_SNP [dm6]	G	A	1.934e^-4	0.555	INTRON CG32791
X	8618596	X_8618596_SNP [dm3] X_8724563_SNP [dm6]	T	A	1.935e^-4	0.555	UPSTREAM CR43297 INTERGENIC
3R	21468319	3R_21468319_SNP [dm3] 3R_25642597_SNP [dm6]	T	C	1.941e^-4	0.555	INTRON jigr1
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	1.943e^-4	0.555	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2L	15473934	2L_15473934_SNP [dm3] 2L_15473934_SNP [dm6]	G	T	1.947e^-4	0.555	INTERGENIC	regulatory region REDfly_CRMs
2L	6194790	2L_6194790_SNP [dm3] 2L_6194790_SNP [dm6]	C	T	1.947e^-4	0.555	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3R	6537736	3R_6537736_SNP [dm3] 3R_10712014_SNP [dm6]	G	A	1.950e^-4	0.555	UPSTREAM CG14689 INTERGENIC
3R	16846472	3R_16846472_SNP [dm3] 3R_21020750_SNP [dm6]	A	G	1.950e^-4	0.555	UTR_3_PRIME Rlip DOWNSTREAM CG17278
X	3339613	X_3339613_INS [dm3] X_3445580_INS [dm6]	T	TTTTT	1.952e^-4	0.555	UPSTREAM CG12535 INTRON CR44999 & 1 other
3R	10457515	3R_10457515_SNP [dm3] 3R_14631793_SNP [dm6]	C	T	1.957e^-4	0.555	INTRON CG7886 & 1 other
3R	12678879	3R_12678879_SNP [dm3] 3R_16853157_SNP [dm6]	C	A	1.962e^-4	0.555	INTRON iab-8 & 1 other EXON iab-4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5622031	2L_5622031_SNP [dm3] 2L_5622031_SNP [dm6]	C	T	1.963e^-4	0.555	NON_SYNONYMOUS_CODING Cyp6a16
2R	8616225	2R_8616225_SNP [dm3] 2R_12728720_SNP [dm6]	C	T	1.965e^-4	0.555	INTRON CG42663
3R	8283455	3R_8283455_SNP [dm3] 3R_12457733_SNP [dm6]	G	A	1.967e^-4	0.555	NON_SYNONYMOUS_CODING trus DOWNSTREAM CG5961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11194445	2L_11194445_SNP [dm3] 2L_11194445_SNP [dm6]	G	T	1.970e^-4	0.555	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20861965	3L_20861965_SNP [dm3] 3L_20868865_SNP [dm6]	G	T	1.978e^-4	0.555	INTRON CG32432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10002809	2L_10002809_SNP [dm3] 2L_10002809_SNP [dm6]	T	A	1.984e^-4	0.555	UPSTREAM SoYb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15767315	3R_15767315_DEL [dm3] 3R_19941593_DEL [dm6]	AAG	A	1.986e^-4	0.555	INTRON Hs6st
3L	5489614	3L_5489614_SNP [dm3] 3L_5496514_SNP [dm6]	G	A	1.987e^-4	0.555	INTERGENIC
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	1.994e^-4	0.555	INTRON Cad87A
3R	6550322	3R_6550322_SNP [dm3] 3R_10724600_SNP [dm6]	C	T	1.996e^-4	0.555	INTERGENIC
X	4211966	X_4211966_SNP [dm3] X_4317933_SNP [dm6]	A	G	1.997e^-4	0.555	SYNONYMOUS_CODING mei-9	TF binding site BDTNP1_TFBS_dl
2L	14915314	2L_14915314_SNP [dm3] 2L_14915314_SNP [dm6]	C	T	1.998e^-4	0.555	INTRON CG42313
3L	20878835	3L_20878835_SNP [dm3] 3L_20885735_SNP [dm6]	A	G	1.999e^-4	0.555	UPSTREAM CG32432 INTERGENIC
3R	12719376	3R_12719376_SNP [dm3] 3R_16893654_SNP [dm6]	T	C	2.005e^-4	0.555	INTRON iab-8 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16474409	3R_16474409_SNP [dm3] 3R_20648687_SNP [dm6]	A	T	2.010e^-4	0.555	UTR_5_PRIME GluRIIE UTR_3_PRIME GluRIID
X	18133623	X_18133623_SNP [dm3] X_18239590_SNP [dm6]	A	G	2.011e^-4	0.555	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	8607320	2R_8607320_INS [dm3] 2R_12719815_INS [dm6]	T	TATAT	2.011e^-4	0.555	INTRON CG42663
3R	6550535	3R_6550535_SNP [dm3] 3R_10724813_SNP [dm6]	T	C	2.012e^-4	0.555	INTERGENIC
3R	15093201	3R_15093201_DEL [dm3] 3R_19267479_DEL [dm6]	AATACTGTTA	A	2.016e^-4	0.555	INTERGENIC
3L	8654154	3L_8654154_SNP [dm3] 3L_8661054_SNP [dm6]	C	T	2.019e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27408253	3R_27408253_SNP [dm3] 3R_31582531_SNP [dm6]	A	T	2.021e^-4	0.555	INTRON rod
2R	19227185	2R_19227185_SNP [dm3] 2R_23339662_SNP [dm6]	A	G	2.026e^-4	0.555	INTERGENIC
3L	15702261	3L_15702261_SNP [dm3] 3L_15709161_SNP [dm6]	C	A	2.027e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24721594	3R_24721594_SNP [dm3] 3R_28895872_SNP [dm6]	C	G	2.032e^-4	0.555	INTRON Doa
X	18133886	X_18133886_SNP [dm3] X_18239853_SNP [dm6]	C	T	2.036e^-4	0.555	DOWNSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	2.036e^-4	0.555	INTERGENIC
3R	2165538	3R_2165538_SNP [dm3] 3R_6339816_SNP [dm6]	C	A	2.036e^-4	0.555	UPSTREAM Osi20 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2593723	2L_2593723_SNP [dm3] 2L_2593723_SNP [dm6]	G	T	2.037e^-4	0.555	DOWNSTREAM CG15394 INTERGENIC
2L	966402	2L_966402_SNP [dm3] 2L_966402_SNP [dm6]	T	A	2.040e^-4	0.555	INTERGENIC
X	9115874	X_9115874_SNP [dm3] X_9221841_SNP [dm6]	G	A	2.041e^-4	0.555	INTRON t
2R	8176481	2R_8176481_SNP [dm3] 2R_12288976_SNP [dm6]	C	T	2.042e^-4	0.555	INTRON CG42700
3L	4032190	3L_4032190_SNP [dm3] 3L_4032190_SNP [dm6]	G	C	2.046e^-4	0.555	SPLICE_SITE_REGION Gr64d UTR_5_PRIME Gr64d & 1 other DOWNSTREAM Gr64b & 1 other INTRON Gr64d
3L	12458581	3L_12458581_SNP [dm3] 3L_12465481_SNP [dm6]	A	T	2.047e^-4	0.555	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	5489570	3L_5489570_DEL [dm3] 3L_5496470_DEL [dm6]	CGCTCCGTAAACTGTAAC...	C	2.047e^-4	0.555	INTERGENIC
3R	11580746	3R_11580746_SNP [dm3] 3R_15755024_SNP [dm6]	T	C	2.054e^-4	0.555	INTERGENIC
2L	14471383	2L_14471383_INS [dm3] 2L_14471383_INS [dm6]	A	AAAAA	2.056e^-4	0.555	INTERGENIC
X	19282266	X_19282266_INS [dm3] X_19388233_INS [dm6]	T	TACAATACT	2.056e^-4	0.555	INTRON kek5
3L	12704641	3L_12704641_SNP [dm3] 3L_12711541_SNP [dm6]	A	G	2.058e^-4	0.555	INTERGENIC
3L	20904570	3L_20904570_SNP [dm3] 3L_20911470_SNP [dm6]	A	T	2.060e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8602750	3L_8602750_SNP [dm3] 3L_8609650_SNP [dm6]	G	A	2.062e^-4	0.555	INTRON CG6282	TF binding site mE1_TFBS_cad
3L	9857508	3L_9857508_INS [dm3] 3L_9864408_INS [dm6]	A	ATTTTGGCACGCACATTATT...	2.065e^-4	0.555	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13131947	3R_13131947_SNP [dm3] 3R_17306225_SNP [dm6]	T	A	2.074e^-4	0.556	INTERGENIC
2R	18344613	2R_18344613_SNP [dm3] 2R_22457108_SNP [dm6]	T	C	2.076e^-4	0.556	INTRON CG10384
3R	6495098	3R_6495098_SNP [dm3] 3R_10669376_SNP [dm6]	T	C	2.084e^-4	0.557	INTERGENIC
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	2.087e^-4	0.557	INTRON Octbeta2R
3R	2492744	3R_2492744_SNP [dm3] 3R_6667022_SNP [dm6]	G	A	2.095e^-4	0.557	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8976346	3R_8976346_SNP [dm3] 3R_13150624_SNP [dm6]	C	T	2.095e^-4	0.557	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	6241482	3R_6241482_SNP [dm3] 3R_10415760_SNP [dm6]	C	A	2.097e^-4	0.557	SYNONYMOUS_CODING CG6345	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	3031624	2L_3031624_SNP [dm3] 2L_3031624_SNP [dm6]	C	T	2.109e^-4	0.557	SYNONYMOUS_CODING GABPI UPSTREAM CR44147 DOWNSTREAM CG17258	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19972512	X_19972512_DEL [dm3] X_20078479_DEL [dm6]	GTATGTTTGTG...	G	2.109e^-4	0.557	INTERGENIC
3R	20569615	3R_20569615_SNP [dm3] 3R_24743893_SNP [dm6]	T	A	2.110e^-4	0.557	INTRON tok
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	2.113e^-4	0.557	INTERGENIC
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	2.116e^-4	0.557	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
X	10194314	X_10194314_SNP [dm3] X_10300281_SNP [dm6]	A	G	2.119e^-4	0.557	INTRON alpha-Man-I
X	1942087	X_1942087_SNP [dm3] X_2048054_SNP [dm6]	A	G	2.120e^-4	0.557	INTRON CG4313 & 1 other
2R	14020974	2R_14020974_SNP [dm3] 2R_18133469_SNP [dm6]	G	T	2.121e^-4	0.557	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	20119116	3R_20119116_SNP [dm3] 3R_24293394_SNP [dm6]	A	G	2.122e^-4	0.557	UTR_3_PRIME CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_sens
3R	12630355	3R_12630355_SNP [dm3] 3R_16804633_SNP [dm6]	T	C	2.131e^-4	0.559	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	2.132e^-4	0.559	INTERGENIC
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	2.143e^-4	0.56	INTERGENIC
3R	6273953	3R_6273953_SNP [dm3] 3R_10448231_SNP [dm6]	G	T	2.144e^-4	0.56	INTERGENIC
X	9093722	X_9093722_SNP [dm3] X_9199689_SNP [dm6]	G	A	2.155e^-4	0.561	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	8949407	X_8949407_SNP [dm3] X_9055374_SNP [dm6]	T	C	2.157e^-4	0.561	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
3L	9594512	3L_9594512_MNP [dm3] 3L_9601412_MNP [dm6]	GCG	TTC	2.159e^-4	0.561	UPSTREAM CG3306 & 1 other INTERGENIC
3L	12154694	3L_12154694_SNP [dm3] 3L_12161594_SNP [dm6]	A	G	2.160e^-4	0.561	INTRON CG9760
X	18135474	X_18135474_SNP [dm3] X_18241441_SNP [dm6]	C	G	2.161e^-4	0.561	SYNONYMOUS_CODING upd2	TF binding site mE1_TFBS_chinmo
3L	5866870	3L_5866870_SNP [dm3] 3L_5873770_SNP [dm6]	T	A	2.165e^-4	0.561	NON_SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
3R	12943599	3R_12943599_SNP [dm3] 3R_17117877_SNP [dm6]	C	T	2.172e^-4	0.561	INTRON cher	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	6547412	3R_6547412_SNP [dm3] 3R_10721690_SNP [dm6]	T	C	2.174e^-4	0.561	INTERGENIC
3R	8770819	3R_8770819_SNP [dm3] 3R_12945097_SNP [dm6]	A	G	2.176e^-4	0.561	INTERGENIC
X	12585183	X_12585183_SNP [dm3] X_12691150_SNP [dm6]	G	T	2.189e^-4	0.561	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14975074	2L_14975074_SNP [dm3] 2L_14975074_SNP [dm6]	A	T	2.190e^-4	0.561	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6474322	3R_6474322_SNP [dm3] 3R_10648600_SNP [dm6]	A	T	2.192e^-4	0.561	INTERGENIC
3L	12185769	3L_12185769_SNP [dm3] 3L_12192669_SNP [dm6]	A	T	2.193e^-4	0.561	NON_SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P
X	7802795	X_7802795_SNP [dm3] X_7908762_SNP [dm6]	C	T	2.194e^-4	0.561	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12381367	3L_12381367_SNP [dm3] 3L_12388267_SNP [dm6]	T	C	2.196e^-4	0.561	UPSTREAM Ncc69 INTRON Ncc69
2R	19227184	2R_19227184_SNP [dm3] 2R_23339661_SNP [dm6]	C	A	2.198e^-4	0.561	INTERGENIC
2L	15383287	2L_15383287_SNP [dm3] 2L_15383287_SNP [dm6]	T	C	2.199e^-4	0.561	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8129493	2R_8129493_SNP [dm3] 2R_12241988_SNP [dm6]	A	T	2.202e^-4	0.561	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	2.203e^-4	0.561	INTRON Cad87A
3R	8381272	3R_8381272_SNP [dm3] 3R_12555550_SNP [dm6]	G	A	2.213e^-4	0.562	INTRON Octbeta2R
2R	10617505	2R_10617505_DEL [dm3] 2R_14730000_DEL [dm6]	AGTCGGCTTCTA...	A	2.214e^-4	0.562	INTERGENIC
X	18133621	X_18133621_SNP [dm3] X_18239588_SNP [dm6]	A	G	2.229e^-4	0.564	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	25009934	3R_25009934_SNP [dm3] 3R_29184212_SNP [dm6]	C	A	2.234e^-4	0.564	INTRON CG14509
2L	2590141	2L_2590141_SNP [dm3] 2L_2590141_SNP [dm6]	C	T	2.239e^-4	0.564	INTERGENIC	TF binding site mE1_TFBS_inv
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	2.240e^-4	0.564	INTRON Cad87A
3L	18191886	3L_18191886_SNP [dm3] 3L_18198786_SNP [dm6]	C	G	2.247e^-4	0.564	INTERGENIC
3R	8031554	3R_8031554_SNP [dm3] 3R_12205832_SNP [dm6]	C	A	2.252e^-4	0.564	UPSTREAM tRNA:CR31356 INTERGENIC
X	8659675	X_8659675_INS [dm3] X_8765642_INS [dm6]	A	ATTCTCATTCCCA...	2.254e^-4	0.564	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18110720	3L_18110720_DEL [dm3] 3L_18117620_DEL [dm6]	AA	A	2.258e^-4	0.564	UTR_3_PRIME CG32195 INTRON CG7341
3L	9272066	3L_9272066_SNP [dm3] 3L_9278966_SNP [dm6]	G	A	2.258e^-4	0.564	INTRON GluRIB
3L	1689053	3L_1689053_SNP [dm3] 3L_1689053_SNP [dm6]	C	T	2.262e^-4	0.564	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	1111232	2L_1111232_SNP [dm3] 2L_1111232_SNP [dm6]	G	A	2.265e^-4	0.564	INTRON CG14339
2L	1111238	2L_1111238_INS [dm3] 2L_1111238_INS [dm6]	T	TATA	2.265e^-4	0.564	INTRON CG14339
2R	8129495	2R_8129495_SNP [dm3] 2R_12241990_SNP [dm6]	C	T	2.268e^-4	0.564	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	7747776	3R_7747776_SNP [dm3] 3R_11922054_SNP [dm6]	G	A	2.275e^-4	0.564	INTRON Cad87A
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	2.275e^-4	0.564	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
2R	19893723	2R_19893723_SNP [dm3] 2R_24006200_SNP [dm6]	A	G	2.276e^-4	0.564	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16718195	X_16718195_SNP [dm3] X_16824162_SNP [dm6]	A	T	2.277e^-4	0.564	INTRON CG4829
3R	11882834	3R_11882834_SNP [dm3] 3R_16057112_SNP [dm6]	A	G	2.278e^-4	0.564	INTRON msps
X	8562705	X_8562705_SNP [dm3] X_8668672_SNP [dm6]	C	A	2.284e^-4	0.565	INTERGENIC
2R	8118741	2R_8118741_SNP [dm3] 2R_12231236_SNP [dm6]	T	C	2.290e^-4	0.566	INTERGENIC
3R	14299117	3R_14299117_SNP [dm3] 3R_18473395_SNP [dm6]	C	A	2.293e^-4	0.566	INTRON fru
3R	26178785	3R_26178785_SNP [dm3] 3R_30353063_SNP [dm6]	T	A	2.297e^-4	0.566	INTRON hdc
2L	10065565	2L_10065565_SNP [dm3] 2L_10065565_SNP [dm6]	T	A	2.300e^-4	0.566	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1697095	2L_1697095_SNP [dm3] 2L_1697095_SNP [dm6]	A	G	2.312e^-4	0.567	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	5952144	3L_5952144_SNP [dm3] 3L_5959044_SNP [dm6]	T	A	2.315e^-4	0.567	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24954354	3R_24954354_SNP [dm3] 3R_29128632_SNP [dm6]	T	G	2.318e^-4	0.567	UTR_3_PRIME dgt6 DOWNSTREAM CG11880
3R	21584117	3R_21584117_SNP [dm3] 3R_25758395_SNP [dm6]	T	A	2.320e^-4	0.567	INTRON LpR1
3R	15093266	3R_15093266_SNP [dm3] 3R_19267544_SNP [dm6]	A	T	2.328e^-4	0.567	INTERGENIC
3R	8120454	3R_8120454_SNP [dm3] 3R_12294732_SNP [dm6]	G	T	2.332e^-4	0.567	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4438098	X_4438098_SNP [dm3] X_4544065_SNP [dm6]	T	A	2.332e^-4	0.567	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	8138745	2R_8138745_SNP [dm3] 2R_12251240_SNP [dm6]	G	C	2.333e^-4	0.567	INTERGENIC
3R	6575358	3R_6575358_SNP [dm3] 3R_10749636_SNP [dm6]	C	A	2.339e^-4	0.567	INTRON TkR86C
3R	2221973	3R_2221973_SNP [dm3] 3R_6396251_SNP [dm6]	G	T	2.340e^-4	0.567	INTRON Dmtn
3R	7789093	3R_7789093_SNP [dm3] 3R_11963371_SNP [dm6]	A	T	2.353e^-4	0.567	NON_SYNONYMOUS_CODING aur UPSTREAM CG3281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	6627227	3R_6627227_SNP [dm3] 3R_10801505_SNP [dm6]	C	T	2.353e^-4	0.567	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	2.357e^-4	0.567	INTRON CR44941
3R	6628708	3R_6628708_SNP [dm3] 3R_10802986_SNP [dm6]	C	A	2.358e^-4	0.567	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_sens
3R	14654784	3R_14654784_SNP [dm3] 3R_18829062_SNP [dm6]	G	C	2.360e^-4	0.567	INTRON CG18208
2L	14478561	2L_14478561_SNP [dm3] 2L_14478561_SNP [dm6]	T	A	2.363e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	20815839	3R_20815839_SNP [dm3] 3R_24990117_SNP [dm6]	T	G	2.366e^-4	0.567	INTRON tnc
2R	14020809	2R_14020809_SNP [dm3] 2R_18133304_SNP [dm6]	A	T	2.367e^-4	0.567	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1726919	3L_1726919_SNP [dm3] 3L_1726919_SNP [dm6]	A	C	2.370e^-4	0.567	INTRON drpr
3R	6565946	3R_6565946_SNP [dm3] 3R_10740224_SNP [dm6]	G	A	2.371e^-4	0.567	INTRON TkR86C
3R	10634068	3R_10634068_SNP [dm3] 3R_14808346_SNP [dm6]	T	C	2.371e^-4	0.567	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10867767	3L_10867767_SNP [dm3] 3L_10874667_SNP [dm6]	A	T	2.375e^-4	0.567	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9365052	2L_9365052_SNP [dm3] 2L_9365052_SNP [dm6]	T	G	2.376e^-4	0.567	DOWNSTREAM CR43404 INTERGENIC
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	2.380e^-4	0.567	INTRON ClC-a
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	2.383e^-4	0.567	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3L	12185848	3L_12185848_SNP [dm3] 3L_12192748_SNP [dm6]	T	C	2.384e^-4	0.567	SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site mE1_TFBS_sens
3L	11016619	3L_11016619_SNP [dm3] 3L_11023519_SNP [dm6]	T	A	2.385e^-4	0.567	UPSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11751072	3R_11751072_SNP [dm3] 3R_15925350_SNP [dm6]	A	G	2.396e^-4	0.568	UPSTREAM CG34276 INTRON CG4221
2L	15734454	2L_15734454_SNP [dm3] 2L_15734454_SNP [dm6]	T	C	2.406e^-4	0.568	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	2.407e^-4	0.568	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10065602	2L_10065602_SNP [dm3] 2L_10065602_SNP [dm6]	C	T	2.408e^-4	0.568	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8477405	3R_8477405_SNP [dm3] 3R_12651683_SNP [dm6]	A	C	2.415e^-4	0.568	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19967727	3L_19967727_SNP [dm3] 3L_19974627_SNP [dm6]	C	T	2.416e^-4	0.568	INTRON Ac76E
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	2.419e^-4	0.568	INTERGENIC
3L	12710988	3L_12710988_DEL [dm3] 3L_12717888_DEL [dm6]	AAA	G	2.423e^-4	0.568	INTERGENIC
3R	10119687	3R_10119687_DEL [dm3] 3R_14293965_DEL [dm6]	TTT	T	2.424e^-4	0.568	INTRON CG12207
3L	13464113	3L_13464113_SNP [dm3] 3L_13471013_SNP [dm6]	C	T	2.427e^-4	0.568	INTRON CG10089	TF binding site mE1_TFBS_cad
3R	6135425	3R_6135425_SNP [dm3] 3R_10309703_SNP [dm6]	A	G	2.427e^-4	0.568	SPLICE_SITE_REGION CG6293 INTRON CG6293
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	2.434e^-4	0.568	INTRON beat-Vc
3R	23122451	3R_23122451_SNP [dm3] 3R_27296729_SNP [dm6]	A	C	2.434e^-4	0.568	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7751014	3R_7751014_SNP [dm3] 3R_11925292_SNP [dm6]	T	A	2.435e^-4	0.568	INTRON Cad87A
3R	8119727	3R_8119727_SNP [dm3] 3R_12294005_SNP [dm6]	C	T	2.437e^-4	0.568	SPLICE_SITE_REGION svp INTRON svp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	2.438e^-4	0.568	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3R	19617956	3R_19617956_SNP [dm3] 3R_23792234_SNP [dm6]	G	C	2.450e^-4	0.57	INTRON mbc
3R	6281138	3R_6281138_SNP [dm3] 3R_10455416_SNP [dm6]	T	C	2.456e^-4	0.57	INTERGENIC
3L	12459991	3L_12459991_SNP [dm3] 3L_12466891_SNP [dm6]	T	C	2.461e^-4	0.57	INTRON eyg	TF binding site BDTNP1_TFBS_z
2L	14478337	2L_14478337_SNP [dm3] 2L_14478337_SNP [dm6]	C	T	2.462e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	14299123	3R_14299123_INS [dm3] 3R_18473401_INS [dm6]	T	TAA	2.465e^-4	0.57	INTRON fru
3R	14299125	3R_14299125_SNP [dm3] 3R_18473403_SNP [dm6]	G	A	2.465e^-4	0.57	INTRON fru
3R	24946504	3R_24946504_DEL [dm3] 3R_29120782_DEL [dm6]	GT	C	2.471e^-4	0.571	INTRON yem	TF binding site mE1_TFBS_chinmo
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	2.478e^-4	0.572	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	2.483e^-4	0.572	INTRON Ca-beta
3L	20931108	3L_20931108_SNP [dm3] 3L_20938008_SNP [dm6]	T	A	2.485e^-4	0.572	INTRON fng
3R	14299106	3R_14299106_SNP [dm3] 3R_18473384_SNP [dm6]	T	A	2.492e^-4	0.572	INTRON fru
3R	6565952	3R_6565952_SNP [dm3] 3R_10740230_SNP [dm6]	C	G	2.502e^-4	0.572	INTRON TkR86C
3R	6279808	3R_6279808_SNP [dm3] 3R_10454086_SNP [dm6]	T	C	2.502e^-4	0.572	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	9099172	2R_9099172_SNP [dm3] 2R_13211667_SNP [dm6]	A	G	2.503e^-4	0.572	SYNONYMOUS_CODING CG34235 UTR_5_PRIME CG30058 & 1 other UPSTREAM CG34312 & 1 other DOWNSTREAM AQP
3L	9283258	3L_9283258_SNP [dm3] 3L_9290158_SNP [dm6]	A	T	2.510e^-4	0.572	INTERGENIC
3L	9283265	3L_9283265_DEL [dm3] 3L_9290165_DEL [dm6]	CTGA	C	2.510e^-4	0.572	INTERGENIC
3L	12459955	3L_12459955_SNP [dm3] 3L_12466855_SNP [dm6]	A	G	2.518e^-4	0.572	INTRON eyg	TF binding site BDTNP1_TFBS_z
2L	14471337	2L_14471337_SNP [dm3] 2L_14471337_SNP [dm6]	C	A	2.520e^-4	0.572	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14020670	2R_14020670_SNP [dm3] 2R_18133165_SNP [dm6]	A	G	2.526e^-4	0.572	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	6279226	3R_6279226_SNP [dm3] 3R_10453504_SNP [dm6]	T	C	2.526e^-4	0.572	INTERGENIC
3R	6616874	3R_6616874_SNP [dm3] 3R_10791152_SNP [dm6]	A	T	2.528e^-4	0.572	DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs
3R	6959170	3R_6959170_SNP [dm3] 3R_11133448_SNP [dm6]	C	T	2.529e^-4	0.572	INTERGENIC
3L	5361929	3L_5361929_INS [dm3] 3L_5368829_INS [dm6]	C	CTCCCAA	2.529e^-4	0.572	UPSTREAM CG10635 & 1 other INTERGENIC
3L	1555519	3L_1555519_SNP [dm3] 3L_1555519_SNP [dm6]	C	T	2.533e^-4	0.572	UTR_3_PRIME CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
2R	11803487	2R_11803487_SNP [dm3] 2R_15915982_SNP [dm6]	T	C	2.538e^-4	0.572	UPSTREAM CR44373 INTRON sli
2L	10047313	2L_10047313_SNP [dm3] 2L_10047313_SNP [dm6]	C	A	2.540e^-4	0.572	INTERGENIC
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	2.541e^-4	0.572	INTRON Ca-beta
3R	12629760	3R_12629760_DEL [dm3] 3R_16804038_DEL [dm6]	GCAACATTTTTG...	G	2.542e^-4	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	2.544e^-4	0.572	INTRON Dscam4
3R	20610663	3R_20610663_SNP [dm3] 3R_24784941_SNP [dm6]	G	T	2.552e^-4	0.573	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
X	3170136	X_3170136_SNP [dm3] X_3276103_SNP [dm6]	C	G	2.556e^-4	0.573	INTRON dnc
2R	10106096	2R_10106096_SNP [dm3] 2R_14218591_SNP [dm6]	C	A	2.560e^-4	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	3945182	3L_3945182_SNP [dm3] 3L_3945182_SNP [dm6]	G	A	2.562e^-4	0.573	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	2487549	3L_2487549_SNP [dm3] 3L_2487549_SNP [dm6]	G	A	2.571e^-4	0.574	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3R	13464078	3R_13464078_SNP [dm3] 3R_17638356_SNP [dm6]	G	T	2.572e^-4	0.574	UPSTREAM CR45222 INTRON CG43175
3R	12629514	3R_12629514_SNP [dm3] 3R_16803792_SNP [dm6]	A	C	2.574e^-4	0.574	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8562844	X_8562844_SNP [dm3] X_8668811_SNP [dm6]	T	C	2.575e^-4	0.574	INTERGENIC
3R	8588099	3R_8588099_SNP [dm3] 3R_12762377_SNP [dm6]	T	A	2.578e^-4	0.574	INTRON beat-Vc
X	16719165	X_16719165_SNP [dm3] X_16825132_SNP [dm6]	A	G	2.591e^-4	0.575	SYNONYMOUS_CODING CG4829
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	2.591e^-4	0.575	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3305395	2R_3305395_SNP [dm3] 2R_7417890_SNP [dm6]	C	T	2.597e^-4	0.575	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	19588225	3R_19588225_SNP [dm3] 3R_23762503_SNP [dm6]	G	A	2.598e^-4	0.575	INTRON CG10217	TF binding site mE1_TFBS_sens
2L	15733128	2L_15733128_SNP [dm3] 2L_15733128_SNP [dm6]	G	A	2.616e^-4	0.578	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	2.621e^-4	0.578	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	15632953	3R_15632953_SNP [dm3] 3R_19807231_SNP [dm6]	A	T	2.622e^-4	0.578	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	18913342	2L_18913342_SNP [dm3] 2L_18913342_SNP [dm6]	G	A	2.622e^-4	0.578	INTERGENIC
2L	18981247	2L_18981247_SNP [dm3] 2L_18981247_SNP [dm6]	G	A	2.628e^-4	0.578	INTRON Swip-1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	7751802	3R_7751802_SNP [dm3] 3R_11926080_SNP [dm6]	A	T	2.632e^-4	0.578	INTRON Cad87A
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	2.634e^-4	0.578	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	2.635e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	15043106	3L_15043106_SNP [dm3] 3L_15050006_SNP [dm6]	T	G	2.648e^-4	0.579	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta
3L	8651707	3L_8651707_SNP [dm3] 3L_8658607_SNP [dm6]	C	G	2.665e^-4	0.579	INTERGENIC
2L	1180652	2L_1180652_SNP [dm3] 2L_1180652_SNP [dm6]	G	T	2.669e^-4	0.579	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
3R	8996967	3R_8996967_INS [dm3] 3R_13171245_INS [dm6]	A	ACACAAA	2.674e^-4	0.579	INTERGENIC
3L	11450272	3L_11450272_SNP [dm3] 3L_11457172_SNP [dm6]	G	A	2.674e^-4	0.579	NON_SYNONYMOUS_CODING CG12289
3R	7747871	3R_7747871_SNP [dm3] 3R_11922149_SNP [dm6]	G	C	2.674e^-4	0.579	INTRON Cad87A
3R	2840027	3R_2840027_SNP [dm3] 3R_7014305_SNP [dm6]	T	A	2.676e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2532413	3R_2532413_SNP [dm3] 3R_6706691_SNP [dm6]	T	A	2.682e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16497795	2L_16497795_SNP [dm3] 2L_16497795_SNP [dm6]	A	G	2.684e^-4	0.579	INTRON Tpr2
3L	9044181	3L_9044181_SNP [dm3] 3L_9051081_SNP [dm6]	C	G	2.688e^-4	0.579	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_cad
3R	6550085	3R_6550085_SNP [dm3] 3R_10724363_SNP [dm6]	T	A	2.690e^-4	0.579	INTERGENIC
3L	14141597	3L_14141597_DEL [dm3] 3L_14148497_DEL [dm6]	TT	T	2.696e^-4	0.579	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	15019799	2L_15019799_SNP [dm3] 2L_15019799_SNP [dm6]	A	T	2.697e^-4	0.579	INTRON GABA-B-R1
3L	13395462	3L_13395462_SNP [dm3] 3L_13402362_SNP [dm6]	A	C	2.701e^-4	0.579	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	11615103	3L_11615103_SNP [dm3] 3L_11622003_SNP [dm6]	C	T	2.701e^-4	0.579	INTRON CG6084	TF binding site mE1_TFBS_sens
2R	10950684	2R_10950684_SNP [dm3] 2R_15063179_SNP [dm6]	G	A	2.705e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	25186088	3R_25186088_SNP [dm3] 3R_29360366_SNP [dm6]	A	C	2.705e^-4	0.579	INTERGENIC
3R	8864715	3R_8864715_SNP [dm3] 3R_13038993_SNP [dm6]	G	C	2.706e^-4	0.579	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
X	7802449	X_7802449_SNP [dm3] X_7908416_SNP [dm6]	A	G	2.709e^-4	0.579	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	2.709e^-4	0.579	UPSTREAM hoe1 INTRON hoe1
3L	3447354	3L_3447354_SNP [dm3] 3L_3447354_SNP [dm6]	G	C	2.710e^-4	0.579	INTRON eIF5B
2L	1069742	2L_1069742_SNP [dm3] 2L_1069742_SNP [dm6]	A	G	2.713e^-4	0.579	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27399224	3R_27399224_SNP [dm3] 3R_31573502_SNP [dm6]	T	C	2.714e^-4	0.579	SYNONYMOUS_CODING gammaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6573765	3R_6573765_SNP [dm3] 3R_10748043_SNP [dm6]	C	A	2.718e^-4	0.579	INTRON TkR86C
X	7803563	X_7803563_SNP [dm3] X_7909530_SNP [dm6]	G	A	2.719e^-4	0.579	SYNONYMOUS_CODING CG1444	TF binding site BDTNP1_TFBS_dl
X	7246958	X_7246958_DEL [dm3] X_7352925_DEL [dm6]	TTAATAGAAATT...	T	2.722e^-4	0.579	INTRON CR44357 & 1 other
3L	16023396	3L_16023396_SNP [dm3] 3L_16030296_SNP [dm6]	T	C	2.728e^-4	0.579	UPSTREAM mir-4941 INTRON Notum	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23500234	3R_23500234_SNP [dm3] 3R_27674512_SNP [dm6]	C	T	2.734e^-4	0.579	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	15940976	2L_15940976_SNP [dm3] 2L_15940976_SNP [dm6]	G	A	2.735e^-4	0.579	UPSTREAM CG12448 INTRON beat-Ib
3L	11293051	3L_11293051_INS [dm3] 3L_11299951_INS [dm6]	T	TG	2.738e^-4	0.579	INTERGENIC
2L	2389228	2L_2389228_SNP [dm3] 2L_2389228_SNP [dm6]	A	C	2.741e^-4	0.579	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7964250	3R_7964250_SNP [dm3] 3R_12138528_SNP [dm6]	C	G	2.744e^-4	0.579	DOWNSTREAM dpr15 INTERGENIC
2R	1837772	2R_1837772_SNP [dm3] 2R_5950267_SNP [dm6]	C	G	2.744e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12710978	3L_12710978_DEL [dm3] 3L_12717878_DEL [dm6]	TTACT	T	2.745e^-4	0.579	INTERGENIC
X	10281906	X_10281906_DEL [dm3] X_10387873_DEL [dm6]	ATGAAGTA	A	2.750e^-4	0.58	INTRON flw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3817228	3L_3817228_SNP [dm3] 3L_3817228_SNP [dm6]	A	T	2.758e^-4	0.58	UPSTREAM Acp63F INTRON Scsalpha
2R	14020961	2R_14020961_SNP [dm3] 2R_18133456_SNP [dm6]	A	G	2.764e^-4	0.58	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	8101361	X_8101361_SNP [dm3] X_8207328_SNP [dm6]	T	C	2.765e^-4	0.58	INTRON sdt
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	2.767e^-4	0.58	INTRON ssh	TF binding site mE1_TFBS_chinmo
3R	23723880	3R_23723880_SNP [dm3] 3R_27898158_SNP [dm6]	T	C	2.769e^-4	0.58	INTRON CG34353
X	19972303	X_19972303_SNP [dm3] X_20078270_SNP [dm6]	T	C	2.772e^-4	0.58	INTERGENIC
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	2.775e^-4	0.58	INTRON klar
2R	19236326	2R_19236326_SNP [dm3] 2R_23348803_SNP [dm6]	C	A	2.779e^-4	0.58	INTERGENIC
3R	2270506	3R_2270506_SNP [dm3] 3R_6444784_SNP [dm6]	C	T	2.803e^-4	0.583	UTR_3_PRIME gpp INTRON gpp
X	8618605	X_8618605_DEL [dm3] X_8724572_DEL [dm6]	AC	A	2.808e^-4	0.583	UPSTREAM CR43297 INTERGENIC
2L	10002996	2L_10002996_SNP [dm3] 2L_10002996_SNP [dm6]	G	A	2.810e^-4	0.583	UPSTREAM SoYb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	8361127	3R_8361127_SNP [dm3] 3R_12535405_SNP [dm6]	A	G	2.812e^-4	0.583	INTRON Octbeta3R
3R	10634043	3R_10634043_SNP [dm3] 3R_14808321_SNP [dm6]	A	G	2.813e^-4	0.583	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6547416	3R_6547416_SNP [dm3] 3R_10721694_SNP [dm6]	T	C	2.825e^-4	0.583	INTERGENIC
3L	23928493	3L_23928493_SNP [dm3] 3L_23935393_SNP [dm6]	A	G	2.828e^-4	0.583	INTRON CG40470
2R	8306402	2R_8306402_SNP [dm3] 2R_12418897_SNP [dm6]	A	G	2.830e^-4	0.583	DOWNSTREAM CG42782 & 2 others INTERGENIC
2L	14975101	2L_14975101_SNP [dm3] 2L_14975101_SNP [dm6]	T	A	2.833e^-4	0.583	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3305403	2R_3305403_SNP [dm3] 2R_7417898_SNP [dm6]	T	G	2.833e^-4	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3166100	2L_3166100_SNP [dm3] 2L_3166100_SNP [dm6]	T	C	2.840e^-4	0.583	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19282255	X_19282255_INS [dm3] X_19388222_INS [dm6]	A	ACAA	2.840e^-4	0.583	INTRON kek5
3R	6276824	3R_6276824_SNP [dm3] 3R_10451102_SNP [dm6]	T	G	2.840e^-4	0.583	INTERGENIC
2L	14478322	2L_14478322_SNP [dm3] 2L_14478322_SNP [dm6]	G	C	2.842e^-4	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	1645119	2L_1645119_SNP [dm3] 2L_1645119_SNP [dm6]	C	T	2.843e^-4	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19096539	3L_19096539_SNP [dm3] 3L_19103439_SNP [dm6]	C	A	2.843e^-4	0.583	INTERGENIC
2R	10026374	2R_10026374_SNP [dm3] 2R_14138869_SNP [dm6]	G	A	2.845e^-4	0.583	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10464224	2L_10464224_SNP [dm3] 2L_10464224_SNP [dm6]	A	G	2.847e^-4	0.583	NON_SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
3R	6616901	3R_6616901_SNP [dm3] 3R_10791179_SNP [dm6]	T	G	2.851e^-4	0.583	DOWNSTREAM Mcm5 INTERGENIC	regulatory region REDfly_CRMs
3R	25144575	3R_25144575_SNP [dm3] 3R_29318853_SNP [dm6]	T	G	2.856e^-4	0.583	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11457004	3R_11457004_SNP [dm3] 3R_15631282_SNP [dm6]	C	G	2.862e^-4	0.583	INTERGENIC
3R	16474292	3R_16474292_SNP [dm3] 3R_20648570_SNP [dm6]	C	G	2.863e^-4	0.583	NON_SYNONYMOUS_CODING GluRIIE DOWNSTREAM GluRIID
3R	2594753	3R_2594753_SNP [dm3] 3R_6769031_SNP [dm6]	A	G	2.866e^-4	0.583	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18551917	2R_18551917_SNP [dm3] 2R_22664412_SNP [dm6]	A	C	2.867e^-4	0.583	UTR_3_PRIME CG4250
2L	10003055	2L_10003055_SNP [dm3] 2L_10003055_SNP [dm6]	A	T	2.873e^-4	0.584	UPSTREAM SoYb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	21355455	3R_21355455_SNP [dm3] 3R_25529733_SNP [dm6]	C	T	2.883e^-4	0.585	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8349556	3R_8349556_SNP [dm3] 3R_12523834_SNP [dm6]	G	T	2.893e^-4	0.586	INTRON Octbeta3R
3R	9566847	3R_9566847_SNP [dm3] 3R_13741125_SNP [dm6]	C	G	2.895e^-4	0.586	INTRON CG34383
3R	8246665	3R_8246665_SNP [dm3] 3R_12420943_SNP [dm6]	G	T	2.895e^-4	0.586	UTR_3_PRIME pps DOWNSTREAM Scgbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3029542	2L_3029542_SNP [dm3] 2L_3029542_SNP [dm6]	A	T	2.915e^-4	0.589	SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	11885437	3R_11885437_SNP [dm3] 3R_16059715_SNP [dm6]	C	T	2.919e^-4	0.589	DOWNSTREAM CG10185 INTRON msps
2L	15647780	2L_15647780_SNP [dm3] 2L_15647780_SNP [dm6]	C	A	2.922e^-4	0.589	UTR_3_PRIME CG4587
2L	14975064	2L_14975064_SNP [dm3] 2L_14975064_SNP [dm6]	G	T	2.941e^-4	0.592	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7266054	3L_7266054_SNP [dm3] 3L_7272954_SNP [dm6]	T	G	2.942e^-4	0.592	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	2.956e^-4	0.593	INTRON GC1
3R	6574424	3R_6574424_SNP [dm3] 3R_10748702_SNP [dm6]	C	A	2.957e^-4	0.593	INTRON TkR86C
3R	25144735	3R_25144735_SNP [dm3] 3R_29319013_SNP [dm6]	C	T	2.961e^-4	0.593	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6651308	3R_6651308_SNP [dm3] 3R_10825586_SNP [dm6]	G	A	2.961e^-4	0.593	INTERGENIC
3L	18830026	3L_18830026_SNP [dm3] 3L_18836926_SNP [dm6]	A	T	2.963e^-4	0.593	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	8021915	X_8021915_SNP [dm3] X_8127882_SNP [dm6]	A	T	2.964e^-4	0.593	INTRON cyr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10707288	2L_10707288_SNP [dm3] 2L_10707288_SNP [dm6]	A	G	2.967e^-4	0.593	INTRON Lip2	TF binding site mE1_TFBS_inv
2R	10616678	2R_10616678_SNP [dm3] 2R_14729173_SNP [dm6]	A	T	2.970e^-4	0.593	INTERGENIC
2L	16813156	2L_16813156_SNP [dm3] 2L_16813156_SNP [dm6]	C	A	2.973e^-4	0.593	INTRON CG13280 & 1 other
2R	8131279	2R_8131279_SNP [dm3] 2R_12243774_SNP [dm6]	T	C	2.981e^-4	0.593	DOWNSTREAM CG43244 & 1 other INTERGENIC
3R	20610723	3R_20610723_SNP [dm3] 3R_24785001_SNP [dm6]	C	A	2.983e^-4	0.593	UTR_3_PRIME CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad
3R	11882856	3R_11882856_SNP [dm3] 3R_16057134_SNP [dm6]	T	A	2.985e^-4	0.593	INTRON msps
X	13270076	X_13270076_DEL [dm3] X_13376043_DEL [dm6]	TT	T	2.985e^-4	0.593	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8255297	3R_8255297_SNP [dm3] 3R_12429575_SNP [dm6]	C	G	2.994e^-4	0.594	UTR_5_PRIME CG5245 UPSTREAM CG5641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	2508281	3R_2508281_INS [dm3] 3R_6682559_INS [dm6]	T	TTTAAGCCTCAAAGAACTTT...	3.002e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8174465	2R_8174465_SNP [dm3] 2R_12286960_SNP [dm6]	G	T	3.007e^-4	0.595	INTRON CG42700
3L	13194057	3L_13194057_SNP [dm3] 3L_13200957_SNP [dm6]	G	A	3.010e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6549116	3R_6549116_SNP [dm3] 3R_10723394_SNP [dm6]	G	T	3.017e^-4	0.595	INTERGENIC
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	3.035e^-4	0.595	DOWNSTREAM PpN58A INTRON Fili
2L	7402216	2L_7402216_SNP [dm3] 2L_7402216_SNP [dm6]	T	C	3.036e^-4	0.595	UPSTREAM CG5171 INTRON CG5171
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	3.037e^-4	0.595	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	7439034	3L_7439034_SNP [dm3] 3L_7445934_SNP [dm6]	T	A	3.041e^-4	0.595	INTRON CG42458
3R	8343766	3R_8343766_SNP [dm3] 3R_12518044_SNP [dm6]	G	A	3.041e^-4	0.595	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	2739930	3R_2739930_SNP [dm3] 3R_6914208_SNP [dm6]	G	C	3.046e^-4	0.595	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	7964912	2L_7964912_SNP [dm3] 2L_7964912_SNP [dm6]	G	C	3.046e^-4	0.595	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13439594	2L_13439594_SNP [dm3] 2L_13439594_SNP [dm6]	A	T	3.047e^-4	0.595	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
2L	1097426	2L_1097426_SNP [dm3] 2L_1097426_SNP [dm6]	A	G	3.048e^-4	0.595	INTRON CG4629
3R	11719639	3R_11719639_SNP [dm3] 3R_15893917_SNP [dm6]	C	A	3.053e^-4	0.595	INTRON CG14877
3L	17543758	3L_17543758_SNP [dm3] 3L_17550658_SNP [dm6]	T	G	3.057e^-4	0.595	UTR_3_PRIME CG7542 DOWNSTREAM CycT
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	3.058e^-4	0.595	INTRON H2.0
3R	27138260	3R_27138260_SNP [dm3] 3R_31312538_SNP [dm6]	C	T	3.060e^-4	0.595	INTRON CG34347
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	3.061e^-4	0.595	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	7983984	3R_7983984_SNP [dm3] 3R_12158262_SNP [dm6]	C	T	3.069e^-4	0.595	INTRON dpr15
3L	12069108	3L_12069108_INS [dm3] 3L_12076008_INS [dm6]	G	GCAGTTG	3.072e^-4	0.595	INTRON Sema-5c
3L	15708180	3L_15708180_SNP [dm3] 3L_15715080_SNP [dm6]	G	A	3.073e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12487153	3L_12487153_SNP [dm3] 3L_12494053_SNP [dm6]	T	A	3.076e^-4	0.595	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9336024	3L_9336024_SNP [dm3] 3L_9342924_SNP [dm6]	C	A	3.076e^-4	0.595	SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad
2R	18199780	2R_18199780_SNP [dm3] 2R_22312275_SNP [dm6]	A	C	3.087e^-4	0.596	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9851032	3L_9851032_SNP [dm3] 3L_9857932_SNP [dm6]	G	A	3.095e^-4	0.596	UTR_3_PRIME CG10809
2R	12116087	2R_12116087_SNP [dm3] 2R_16228582_SNP [dm6]	T	C	3.098e^-4	0.596	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12063199	3L_12063199_SNP [dm3] 3L_12070099_SNP [dm6]	G	C	3.099e^-4	0.596	NON_SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13116862	3L_13116862_SNP [dm3] 3L_13123762_SNP [dm6]	C	T	3.100e^-4	0.596	INTERGENIC
2L	10065555	2L_10065555_SNP [dm3] 2L_10065555_SNP [dm6]	T	G	3.100e^-4	0.596	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1238337	3L_1238337_SNP [dm3] 3L_1238337_SNP [dm6]	A	T	3.110e^-4	0.596	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8618608	X_8618608_SNP [dm3] X_8724575_SNP [dm6]	T	C	3.110e^-4	0.596	UPSTREAM CR43297 INTERGENIC
2L	11919816	2L_11919816_SNP [dm3] 2L_11919816_SNP [dm6]	T	C	3.110e^-4	0.596	INTRON Pde1c
3L	9594437	3L_9594437_SNP [dm3] 3L_9601337_SNP [dm6]	A	C	3.113e^-4	0.596	UPSTREAM CG3306 & 1 other DOWNSTREAM CG3222 INTERGENIC
3R	21858521	3R_21858521_SNP [dm3] 3R_26032799_SNP [dm6]	A	G	3.119e^-4	0.596	UPSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	3.122e^-4	0.596	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	9364916	2L_9364916_SNP [dm3] 2L_9364916_SNP [dm6]	G	C	3.123e^-4	0.596	EXON CR43404
2R	8131288	2R_8131288_SNP [dm3] 2R_12243783_SNP [dm6]	C	G	3.125e^-4	0.596	DOWNSTREAM CG43244 & 1 other INTERGENIC
2R	1835645	2R_1835645_INS [dm3] 2R_5948140_INS [dm6]	A	AATGCGTCTGTCTGTGGAAT...	3.138e^-4	0.596	INTERGENIC	transposable element FlyBase
2R	17105640	2R_17105640_SNP [dm3] 2R_21218135_SNP [dm6]	G	A	3.142e^-4	0.596	UTR_3_PRIME ASPP UPSTREAM CG15661
3R	12630459	3R_12630459_SNP [dm3] 3R_16804737_SNP [dm6]	C	T	3.142e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13369853	3L_13369853_SNP [dm3] 3L_13376753_SNP [dm6]	A	C	3.147e^-4	0.596	INTERGENIC
X	9734100	X_9734100_SNP [dm3] X_9840067_SNP [dm6]	A	G	3.148e^-4	0.596	INTRON CG32698
X	5724242	X_5724242_SNP [dm3] X_5830209_SNP [dm6]	G	C	3.151e^-4	0.596	INTRON CG15765
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	3.155e^-4	0.596	INTRON Prosap
3R	5321819	3R_5321819_SNP [dm3] 3R_9496097_SNP [dm6]	C	T	3.156e^-4	0.596	SYNONYMOUS_CODING CG8147	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	3026875	2L_3026875_SNP [dm3] 2L_3026875_SNP [dm6]	G	T	3.157e^-4	0.596	SYNONYMOUS_CODING CG3605 DOWNSTREAM CG3542
3R	6661407	3R_6661407_SNP [dm3] 3R_10835685_SNP [dm6]	G	A	3.157e^-4	0.596	INTRON Cad86C
3R	2227229	3R_2227229_SNP [dm3] 3R_6401507_SNP [dm6]	T	C	3.167e^-4	0.596	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	3.169e^-4	0.596	INTRON fas
2L	10065705	2L_10065705_SNP [dm3] 2L_10065705_SNP [dm6]	T	G	3.169e^-4	0.596	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15424411	3R_15424411_SNP [dm3] 3R_19598689_SNP [dm6]	T	C	3.174e^-4	0.596	INTRON Cpr92A
3R	7746556	3R_7746556_SNP [dm3] 3R_11920834_SNP [dm6]	T	G	3.186e^-4	0.596	INTRON Cad87A
2L	1111235	2L_1111235_SNP [dm3] 2L_1111235_SNP [dm6]	A	T	3.188e^-4	0.596	INTRON CG14339
3L	8654067	3L_8654067_SNP [dm3] 3L_8660967_SNP [dm6]	A	T	3.188e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.462e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	6.58e-05
In_3R_P	0.02079

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	13.8598	0.001
In_3R_P	5.6678	0.0588

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2309 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	8523852	2L_8523852_SNP [dm3] 2L_8523852_SNP [dm6]	C	G	1.592e^-8	0.03	NON_SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8523948	2L_8523948_SNP [dm3] 2L_8523948_SNP [dm6]	G	C	6.624e^-8	0.032	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8525014	2L_8525014_SNP [dm3] 2L_8525014_SNP [dm6]	A	T	6.647e^-8	0.032	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	6.774e^-8	0.032	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524906	2L_8524906_SNP [dm3] 2L_8524906_SNP [dm6]	C	A	1.006e^-7	0.034	UTR_3_PRIME Acer DOWNSTREAM lmgA & 2 others
2L	8523105	2L_8523105_SNP [dm3] 2L_8523105_SNP [dm6]	G	C	1.286e^-7	0.034	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8523133	2L_8523133_SNP [dm3] 2L_8523133_SNP [dm6]	G	A	1.286e^-7	0.034	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8525183	2L_8525183_SNP [dm3] 2L_8525183_SNP [dm6]	G	T	2.122e^-7	0.047	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	2.271e^-7	0.047	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525348	2L_8525348_SNP [dm3] 2L_8525348_SNP [dm6]	T	A	2.585e^-7	0.047	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	2.732e^-7	0.047	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8523762	2L_8523762_SNP [dm3] 2L_8523762_SNP [dm6]	G	T	4.448e^-7	0.065	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad
2L	8521633	2L_8521633_SNP [dm3] 2L_8521633_SNP [dm6]	G	A	4.536e^-7	0.065	UTR_3_PRIME CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	5.367e^-7	0.072	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	6.049e^-7	0.076	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	8524383	2L_8524383_SNP [dm3] 2L_8524383_SNP [dm6]	C	T	7.008e^-7	0.077	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8520294	2L_8520294_SNP [dm3] 2L_8520294_SNP [dm6]	G	A	7.240e^-7	0.077	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	7.806e^-7	0.077	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	7.806e^-7	0.077	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	8.814e^-7	0.083	INTRON CG17834
2L	8523873	2L_8523873_SNP [dm3] 2L_8523873_SNP [dm6]	A	C	9.587e^-7	0.086	SYNONYMOUS_CODING Acer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.094e^-6	0.093	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	1.248e^-6	0.102	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8528886	2L_8528886_SNP [dm3] 2L_8528886_SNP [dm6]	T	C	1.420e^-6	0.111	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	1.526e^-6	0.114	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
2L	8522458	2L_8522458_SNP [dm3] 2L_8522458_SNP [dm6]	T	C	1.617e^-6	0.116	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8530244	2L_8530244_SNP [dm3] 2L_8530244_SNP [dm6]	G	A	1.674e^-6	0.116	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8520157	2L_8520157_SNP [dm3] 2L_8520157_SNP [dm6]	C	A	1.801e^-6	0.121	NON_SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528865	2L_8528865_SNP [dm3] 2L_8528865_SNP [dm6]	C	T	2.056e^-6	0.129	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528881	2L_8528881_SNP [dm3] 2L_8528881_SNP [dm6]	A	G	2.056e^-6	0.129	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	2.214e^-6	0.134	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8526126	2L_8526126_SNP [dm3] 2L_8526126_SNP [dm6]	T	G	2.410e^-6	0.141	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	1194492	2L_1194492_SNP [dm3] 2L_1194492_SNP [dm6]	G	A	2.652e^-6	0.144	INTRON CG5001
3L	7089850	3L_7089850_SNP [dm3] 3L_7096750_SNP [dm6]	C	A	2.733e^-6	0.144	INTRON form3
2L	8520273	2L_8520273_SNP [dm3] 2L_8520273_SNP [dm6]	T	C	2.770e^-6	0.144	SYNONYMOUS_CODING CG13091	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8522486	2L_8522486_SNP [dm3] 2L_8522486_SNP [dm6]	T	C	2.776e^-6	0.144	SYNONYMOUS_CODING Acer DOWNSTREAM CG13091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8520129	2L_8520129_SNP [dm3] 2L_8520129_SNP [dm6]	C	G	2.841e^-6	0.144	SYNONYMOUS_CODING CG13091 DOWNSTREAM CG13090	TF binding site mE1_TFBS_chinmo
2L	8528818	2L_8528818_SNP [dm3] 2L_8528818_SNP [dm6]	A	C	2.922e^-6	0.144	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528825	2L_8528825_SNP [dm3] 2L_8528825_SNP [dm6]	C	T	3.009e^-6	0.145	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	3.237e^-6	0.152	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7091652	3L_7091652_SNP [dm3] 3L_7098552_SNP [dm6]	A	G	3.401e^-6	0.156	INTRON form3
3L	1253676	3L_1253676_SNP [dm3] 3L_1253676_SNP [dm6]	T	C	3.569e^-6	0.159	NON_SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad
2L	8530270	2L_8530270_SNP [dm3] 2L_8530270_SNP [dm6]	C	A	3.890e^-6	0.164	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	3.925e^-6	0.164	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26943105	3R_26943105_SNP [dm3] 3R_31117383_SNP [dm6]	A	G	3.936e^-6	0.164	INTERGENIC
2L	8528846	2L_8528846_SNP [dm3] 2L_8528846_SNP [dm6]	T	A	4.963e^-6	0.2	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	5.010e^-6	0.2	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	5.196e^-6	0.2	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1194571	2L_1194571_SNP [dm3] 2L_1194571_SNP [dm6]	T	G	5.225e^-6	0.2	INTRON CG5001
2L	7171894	2L_7171894_SNP [dm3] 2L_7171894_SNP [dm6]	C	A	5.866e^-6	0.218	INTERGENIC
2R	18261619	2R_18261619_SNP [dm3] 2R_22374114_SNP [dm6]	T	A	6.078e^-6	0.218	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
3L	12066979	3L_12066979_SNP [dm3] 3L_12073879_SNP [dm6]	G	A	6.137e^-6	0.218	INTRON Sema-5c
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	6.153e^-6	0.218	INTRON Rdl
X	496616	X_496616_DEL [dm3] X_602583_DEL [dm6]	TAAGT	T	7.552e^-6	0.262	INTRON CG13366
3R	26943120	3R_26943120_SNP [dm3] 3R_31117398_SNP [dm6]	T	G	7.932e^-6	0.271	INTERGENIC
2L	3210619	2L_3210619_SNP [dm3] 2L_3210619_SNP [dm6]	A	T	8.299e^-6	0.278	EXON CR45336
2L	3085304	2L_3085304_SNP [dm3] 2L_3085304_SNP [dm6]	A	G	8.664e^-6	0.282	INTRON toc
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	8.738e^-6	0.282	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8530204	2L_8530204_SNP [dm3] 2L_8530204_SNP [dm6]	A	T	8.861e^-6	0.282	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7171871	2L_7171871_DEL [dm3] 2L_7171871_DEL [dm6]	AGTAA	A	9.745e^-6	0.305	INTERGENIC
2R	16062788	2R_16062788_SNP [dm3] 2R_20175283_SNP [dm6]	T	A	1.051e^-5	0.323	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8530229	2L_8530229_SNP [dm3] 2L_8530229_SNP [dm6]	G	A	1.091e^-5	0.33	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8529077	2L_8529077_SNP [dm3] 2L_8529077_SNP [dm6]	G	C	1.142e^-5	0.34	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	1.170e^-5	0.343	INTRON hppy
2L	8529062	2L_8529062_SNP [dm3] 2L_8529062_SNP [dm6]	C	T	1.273e^-5	0.367	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8524563	2L_8524563_SNP [dm3] 2L_8524563_SNP [dm6]	G	T	1.377e^-5	0.391	NON_SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8529069	2L_8529069_SNP [dm3] 2L_8529069_SNP [dm6]	T	C	1.432e^-5	0.401	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18073712	3L_18073712_SNP [dm3] 3L_18080612_SNP [dm6]	T	C	1.482e^-5	0.409	DOWNSTREAM CR43253 INTERGENIC
2L	8524089	2L_8524089_SNP [dm3] 2L_8524089_SNP [dm6]	G	A	1.511e^-5	0.409	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7094020	3L_7094020_SNP [dm3] 3L_7100920_SNP [dm6]	T	G	1.525e^-5	0.409	INTRON form3
3L	11056099	3L_11056099_SNP [dm3] 3L_11062999_SNP [dm6]	C	T	1.565e^-5	0.413	NON_SYNONYMOUS_CODING CG32075 UPSTREAM CG32069 DOWNSTREAM Blos2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7094578	3L_7094578_SNP [dm3] 3L_7101478_SNP [dm6]	C	A	1.703e^-5	0.444	INTRON form3
2R	6079366	2R_6079366_SNP [dm3] 2R_10191861_SNP [dm6]	C	G	1.779e^-5	0.457	INTRON KCNQ
2L	12282353	2L_12282353_SNP [dm3] 2L_12282353_SNP [dm6]	A	G	1.803e^-5	0.457	INTRON aret
3R	26943096	3R_26943096_SNP [dm3] 3R_31117374_SNP [dm6]	G	A	1.838e^-5	0.46	INTERGENIC
3L	22601622	3L_22601622_SNP [dm3] 3L_22608522_SNP [dm6]	G	A	1.935e^-5	0.468	INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8523117	2L_8523117_SNP [dm3] 2L_8523117_SNP [dm6]	A	G	1.964e^-5	0.468	INTRON Acer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	23801883	3R_23801883_SNP [dm3] 3R_27976161_SNP [dm6]	G	C	1.978e^-5	0.468	INTRON betaTub97EF
3L	7089891	3L_7089891_SNP [dm3] 3L_7096791_SNP [dm6]	C	T	2.000e^-5	0.468	INTRON form3
3R	15812356	3R_15812356_SNP [dm3] 3R_19986634_SNP [dm6]	T	G	2.029e^-5	0.468	INTRON Hs6st
2L	8527621	2L_8527621_SNP [dm3] 2L_8527621_SNP [dm6]	T	C	2.050e^-5	0.468	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18260231	2R_18260231_SNP [dm3] 2R_22372726_SNP [dm6]	A	G	2.067e^-5	0.468	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	22688323	3L_22688323_SNP [dm3] 3L_22695223_SNP [dm6]	C	T	2.092e^-5	0.468	UPSTREAM CG14452 DOWNSTREAM CG14453 INTERGENIC	transposable element FlyBase
2L	8524431	2L_8524431_SNP [dm3] 2L_8524431_SNP [dm6]	A	T	2.126e^-5	0.468	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18015452	2R_18015452_SNP [dm3] 2R_22127947_SNP [dm6]	A	G	2.130e^-5	0.468	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad
2R	20022867	2R_20022867_SNP [dm3] 2R_24135344_SNP [dm6]	T	C	2.144e^-5	0.468	SYNONYMOUS_CODING CG4065 UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8
2R	6229818	2R_6229818_SNP [dm3] 2R_10342313_SNP [dm6]	T	A	2.298e^-5	0.495	INTRON CG42732
2R	18260132	2R_18260132_SNP [dm3] 2R_22372627_SNP [dm6]	A	C	2.366e^-5	0.504	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	8529111	2L_8529111_SNP [dm3] 2L_8529111_SNP [dm6]	A	G	2.586e^-5	0.545	UPSTREAM CG17834 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9668822	2R_9668822_SNP [dm3] 2R_13781317_SNP [dm6]	A	G	2.676e^-5	0.558	INTRON Cpr50Ca
2R	9668794	2R_9668794_SNP [dm3] 2R_13781289_SNP [dm6]	T	A	2.707e^-5	0.558	INTRON Cpr50Ca
3R	7656754	3R_7656754_SNP [dm3] 3R_11831032_SNP [dm6]	A	T	2.808e^-5	0.569	INTRON CG6959
2L	1575452	2L_1575452_SNP [dm3] 2L_1575452_SNP [dm6]	A	G	2.855e^-5	0.569	INTRON haf
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	2.869e^-5	0.569	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20013894	3R_20013894_SNP [dm3] 3R_24188172_SNP [dm6]	T	C	2.882e^-5	0.569	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
2L	2612212	2L_2612212_SNP [dm3] 2L_2612212_SNP [dm6]	A	T	3.004e^-5	0.578	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4929944	2L_4929944_SNP [dm3] 2L_4929944_SNP [dm6]	T	G	3.062e^-5	0.578	INTRON hoe1
2L	8531564	2L_8531564_SNP [dm3] 2L_8531564_SNP [dm6]	A	G	3.067e^-5	0.578	INTRON CG17834
2L	1933161	2L_1933161_SNP [dm3] 2L_1933161_SNP [dm6]	C	T	3.111e^-5	0.578	INTRON CG7337
3L	5733954	3L_5733954_SNP [dm3] 3L_5740854_SNP [dm6]	A	C	3.125e^-5	0.578	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2L	12878980	2L_12878980_SNP [dm3] 2L_12878980_SNP [dm6]	C	T	3.143e^-5	0.578	INTERGENIC
3L	7631312	3L_7631312_SNP [dm3] 3L_7638212_SNP [dm6]	A	T	3.151e^-5	0.578	SYNONYMOUS_CODING CG33275
3L	3960598	3L_3960598_SNP [dm3] 3L_3960598_SNP [dm6]	A	T	3.176e^-5	0.578	UPSTREAM CG12605 INTRON CG12605
3L	758694	3L_758694_SNP [dm3] 3L_758694_SNP [dm6]	A	G	3.278e^-5	0.586	INTERGENIC
2L	6368875	2L_6368875_SNP [dm3] 2L_6368875_SNP [dm6]	C	T	3.367e^-5	0.586	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8554327	2R_8554327_SNP [dm3] 2R_12666822_SNP [dm6]	G	A	3.368e^-5	0.586	INTRON nemy	TF binding site mE1_TFBS_bab1
2L	3700776	2L_3700776_SNP [dm3] 2L_3700776_SNP [dm6]	C	G	3.376e^-5	0.586	UPSTREAM CG42467 DOWNSTREAM CG42464 & 1 other INTRON Sfp24C1
2L	3502470	2L_3502470_SNP [dm3] 2L_3502470_SNP [dm6]	G	C	3.426e^-5	0.586	SYNONYMOUS_CODING tim
3L	17437247	3L_17437247_SNP [dm3] 3L_17444147_SNP [dm6]	A	G	3.434e^-5	0.586	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1194517	2L_1194517_SNP [dm3] 2L_1194517_SNP [dm6]	G	A	3.436e^-5	0.586	INTRON CG5001
2L	8524455	2L_8524455_SNP [dm3] 2L_8524455_SNP [dm6]	T	C	3.519e^-5	0.59	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24824602	3R_24824602_SNP [dm3] 3R_28998880_SNP [dm6]	T	C	3.539e^-5	0.59	INTRON wat
3L	7091725	3L_7091725_SNP [dm3] 3L_7098625_SNP [dm6]	A	G	3.557e^-5	0.59	INTRON form3
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	3.604e^-5	0.591	INTRON form3
2R	15780950	2R_15780950_SNP [dm3] 2R_19893445_SNP [dm6]	G	A	3.716e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9666689	2R_9666689_SNP [dm3] 2R_13779184_SNP [dm6]	A	G	3.740e^-5	0.591	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.796e^-5	0.591	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26943115	3R_26943115_SNP [dm3] 3R_31117393_SNP [dm6]	T	G	3.806e^-5	0.591	INTERGENIC
3L	7976343	3L_7976343_SNP [dm3] 3L_7983243_SNP [dm6]	G	C	3.844e^-5	0.591	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4493340	3L_4493340_INS [dm3] 3L_4493340_INS [dm6]	T	TT	3.915e^-5	0.591	DOWNSTREAM CR44709 INTERGENIC
2L	1578579	2L_1578579_SNP [dm3] 2L_1578579_SNP [dm6]	G	T	3.965e^-5	0.591	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1578586	2L_1578586_SNP [dm3] 2L_1578586_SNP [dm6]	C	A	3.965e^-5	0.591	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9675700	2R_9675700_SNP [dm3] 2R_13788195_SNP [dm6]	C	G	4.040e^-5	0.591	DOWNSTREAM Cpr50Ca INTERGENIC
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	4.135e^-5	0.591	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7768935	2L_7768935_SNP [dm3] 2L_7768935_SNP [dm6]	G	A	4.165e^-5	0.591	INTRON CG7191
3R	26389829	3R_26389829_SNP [dm3] 3R_30564107_SNP [dm6]	A	C	4.179e^-5	0.591	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	8521004	2L_8521004_SNP [dm3] 2L_8521004_SNP [dm6]	C	A	4.219e^-5	0.591	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	18543198	3L_18543198_SNP [dm3] 3L_18550098_SNP [dm6]	A	G	4.232e^-5	0.591	INTERGENIC
3L	22333242	3L_22333242_SNP [dm3] 3L_22340142_SNP [dm6]	A	G	4.234e^-5	0.591	INTRON Ten-m	TF binding site mE1_TFBS_HSA
2R	18015914	2R_18015914_SNP [dm3] 2R_22128409_SNP [dm6]	C	T	4.333e^-5	0.591	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	22582940	3L_22582940_SNP [dm3] 3L_22589840_SNP [dm6]	T	A	4.351e^-5	0.591	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12280690	2L_12280690_SNP [dm3] 2L_12280690_SNP [dm6]	A	C	4.382e^-5	0.591	INTRON aret	TF binding site mE1_TFBS_sbb
2L	7108979	2L_7108979_SNP [dm3] 2L_7108979_SNP [dm6]	A	G	4.414e^-5	0.591	INTRON Pvf3
2L	4900694	2L_4900694_SNP [dm3] 2L_4900694_SNP [dm6]	G	T	4.417e^-5	0.591	INTRON CG3036
2L	16185046	2L_16185046_SNP [dm3] 2L_16185046_SNP [dm6]	A	C	4.422e^-5	0.591	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2174549	3L_2174549_SNP [dm3] 3L_2174549_SNP [dm6]	A	T	4.427e^-5	0.591	UPSTREAM CG15820 INTERGENIC
2L	6275186	2L_6275186_SNP [dm3] 2L_6275186_SNP [dm6]	A	G	4.428e^-5	0.591	INTRON Ddr
X	12261503	X_12261503_SNP [dm3] X_12367470_SNP [dm6]	A	G	4.463e^-5	0.591	INTERGENIC
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	4.482e^-5	0.591	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	4.482e^-5	0.591	UPSTREAM hoe1 INTRON hoe1
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	4.483e^-5	0.591	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	3255154	3L_3255154_INS [dm3] 3L_3255154_INS [dm6]	C	CCC	4.518e^-5	0.591	DOWNSTREAM CR43626 INTERGENIC
3L	3556945	3L_3556945_SNP [dm3] 3L_3556945_SNP [dm6]	A	G	4.555e^-5	0.591	INTRON Eip63E
2R	14219986	2R_14219986_SNP [dm3] 2R_18332481_SNP [dm6]	C	T	4.557e^-5	0.591	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	6986972	2R_6986972_SNP [dm3] 2R_11099467_SNP [dm6]	A	G	4.568e^-5	0.591	INTRON luna
3R	15812336	3R_15812336_SNP [dm3] 3R_19986614_SNP [dm6]	T	C	4.647e^-5	0.597	INTRON Hs6st
2L	8534902	2L_8534902_SNP [dm3] 2L_8534902_SNP [dm6]	T	A	4.677e^-5	0.597	UPSTREAM CG17834 INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12066932	3L_12066932_SNP [dm3] 3L_12073832_SNP [dm6]	A	T	4.793e^-5	0.607	INTRON Sema-5c
3R	7052190	3R_7052190_SNP [dm3] 3R_11226468_SNP [dm6]	A	G	4.819e^-5	0.607	UTR_3_PRIME scpr-C UPSTREAM CG17726
3L	17270828	3L_17270828_SNP [dm3] 3L_17277728_SNP [dm6]	C	T	4.993e^-5	0.616	INTERGENIC
3R	20013489	3R_20013489_SNP [dm3] 3R_24187767_SNP [dm6]	G	A	5.016e^-5	0.616	UTR_3_PRIME CG5515 & 1 other	TF binding site mE1_TFBS_sens
2R	3525765	2R_3525765_SNP [dm3] 2R_7638260_SNP [dm6]	C	A	5.020e^-5	0.616	UTR_5_PRIME CG43340 UPSTREAM CG43340 INTRON CG43340
3R	10183644	3R_10183644_SNP [dm3] 3R_14357922_SNP [dm6]	C	T	5.023e^-5	0.616	DOWNSTREAM CG31320 INTRON NK7.1
2L	3931877	2L_3931877_SNP [dm3] 2L_3931877_SNP [dm6]	A	G	5.138e^-5	0.626	INTRON fred
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	5.212e^-5	0.63	UTR_5_PRIME CG7201
3R	8113004	3R_8113004_SNP [dm3] 3R_12287282_SNP [dm6]	C	T	5.240e^-5	0.63	INTRON svp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7017166	3L_7017166_SNP [dm3] 3L_7024066_SNP [dm6]	A	G	5.288e^-5	0.632	INTRON Mp
3R	16588207	3R_16588207_SNP [dm3] 3R_20762485_SNP [dm6]	T	A	5.339e^-5	0.632	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8517836	2L_8517836_SNP [dm3] 2L_8517836_SNP [dm6]	A	G	5.355e^-5	0.632	NON_SYNONYMOUS_CODING CG13090 UPSTREAM mRpL51	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7097305	3L_7097305_SNP [dm3] 3L_7104205_SNP [dm6]	T	G	5.399e^-5	0.633	INTRON form3
2R	5783305	2R_5783305_SNP [dm3] 2R_9895800_SNP [dm6]	C	A	5.493e^-5	0.639	NON_SYNONYMOUS_CODING CG30007
2L	3028667	2L_3028667_SNP [dm3] 2L_3028667_SNP [dm6]	T	G	5.523e^-5	0.639	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	10062789	3L_10062789_SNP [dm3] 3L_10069689_SNP [dm6]	T	C	5.668e^-5	0.644	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7801656	2L_7801656_INS [dm3] 2L_7801656_INS [dm6]	T	TT	5.733e^-5	0.644	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
3R	21429529	3R_21429529_SNP [dm3] 3R_25603807_SNP [dm6]	A	C	5.749e^-5	0.644	UTR_3_PRIME msi INTRON ymp
2R	12850092	2R_12850092_SNP [dm3] 2R_16962587_SNP [dm6]	A	T	5.773e^-5	0.644	INTERGENIC
2L	9488964	2L_9488964_SNP [dm3] 2L_9488964_SNP [dm6]	T	G	5.779e^-5	0.644	INTERGENIC
3L	11862232	3L_11862232_SNP [dm3] 3L_11869132_SNP [dm6]	G	A	5.855e^-5	0.644	INTRON CG44837
3R	8286174	3R_8286174_SNP [dm3] 3R_12460452_SNP [dm6]	T	C	5.901e^-5	0.644	UTR_5_PRIME CG12267 UPSTREAM CG12267 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16866701	3R_16866701_SNP [dm3] 3R_21040979_SNP [dm6]	C	G	5.917e^-5	0.644	SPLICE_SITE_REGION Dhc93AB SYNONYMOUS_CODING Dhc93AB
3L	10062788	3L_10062788_SNP [dm3] 3L_10069688_SNP [dm6]	C	T	5.927e^-5	0.644	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9668831	2R_9668831_SNP [dm3] 2R_13781326_SNP [dm6]	G	T	6.012e^-5	0.644	INTRON Cpr50Ca
2R	9668832	2R_9668832_SNP [dm3] 2R_13781327_SNP [dm6]	T	G	6.012e^-5	0.644	INTRON Cpr50Ca
3L	4142811	3L_4142811_SNP [dm3] 3L_4142811_SNP [dm6]	T	G	6.078e^-5	0.644	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
2R	13184459	2R_13184459_SNP [dm3] 2R_17296954_SNP [dm6]	G	C	6.083e^-5	0.644	INTRON mbl
2R	6082599	2R_6082599_SNP [dm3] 2R_10195094_SNP [dm6]	A	T	6.182e^-5	0.644	INTERGENIC
2R	6082595	2R_6082595_SNP [dm3] 2R_10195090_SNP [dm6]	T	C	6.188e^-5	0.644	INTERGENIC
2L	9189335	2L_9189335_SNP [dm3] 2L_9189335_SNP [dm6]	A	G	6.191e^-5	0.644	INTRON tai
3L	22558210	3L_22558210_SNP [dm3] 3L_22565110_SNP [dm6]	G	A	6.193e^-5	0.644	INTERGENIC
3R	4179759	3R_4179759_SNP [dm3] 3R_8354037_SNP [dm6]	G	A	6.229e^-5	0.644	INTERGENIC
2L	5387034	2L_5387034_SNP [dm3] 2L_5387034_SNP [dm6]	A	G	6.271e^-5	0.644	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_inv
3R	15814105	3R_15814105_SNP [dm3] 3R_19988383_SNP [dm6]	A	G	6.283e^-5	0.644	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7092001	3L_7092001_SNP [dm3] 3L_7098901_SNP [dm6]	G	A	6.287e^-5	0.644	INTRON form3
3R	26943204	3R_26943204_SNP [dm3] 3R_31117482_SNP [dm6]	C	G	6.313e^-5	0.644	INTERGENIC
3L	4141299	3L_4141299_SNP [dm3] 3L_4141299_SNP [dm6]	T	A	6.407e^-5	0.649	UTR_3_PRIME Ras64B UPSTREAM Akh
2L	3495010	2L_3495010_SNP [dm3] 2L_3495010_SNP [dm6]	A	T	6.468e^-5	0.649	INTRON tim
2R	20135625	2R_20135625_SNP [dm3] 2R_24248102_SNP [dm6]	G	A	6.469e^-5	0.649	DOWNSTREAM Ir60a INTRON nord
2L	12282462	2L_12282462_SNP [dm3] 2L_12282462_SNP [dm6]	G	C	6.618e^-5	0.657	INTRON aret
2R	12523070	2R_12523070_SNP [dm3] 2R_16635565_SNP [dm6]	G	T	6.681e^-5	0.657	INTRON Alk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18015420	2R_18015420_SNP [dm3] 2R_22127915_SNP [dm6]	T	C	6.701e^-5	0.657	SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D
3R	21990278	3R_21990278_SNP [dm3] 3R_26164556_SNP [dm6]	C	T	6.706e^-5	0.657	INTERGENIC
3R	26943207	3R_26943207_SNP [dm3] 3R_31117485_SNP [dm6]	A	C	6.729e^-5	0.657	INTERGENIC
3L	12066983	3L_12066983_SNP [dm3] 3L_12073883_SNP [dm6]	A	C	6.806e^-5	0.661	INTRON Sema-5c
2L	1218425	2L_1218425_SNP [dm3] 2L_1218425_SNP [dm6]	T	A	6.875e^-5	0.665	UPSTREAM CR43263 & 1 other INTERGENIC
2L	15993511	2L_15993511_SNP [dm3] 2L_15993511_SNP [dm6]	C	T	6.958e^-5	0.669	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7090639	3L_7090639_SNP [dm3] 3L_7097539_SNP [dm6]	C	A	7.151e^-5	0.684	INTRON form3
2L	1211727	2L_1211727_INS [dm3] 2L_1211727_INS [dm6]	T	TT	7.198e^-5	0.685	INTERGENIC
2L	2708526	2L_2708526_SNP [dm3] 2L_2708526_SNP [dm6]	A	C	7.352e^-5	0.696	INTRON CG31690
3L	7091950	3L_7091950_SNP [dm3] 3L_7098850_SNP [dm6]	G	C	7.398e^-5	0.697	INTRON form3
3L	17437174	3L_17437174_INS [dm3] 3L_17444074_INS [dm6]	T	TAAACTTATGTT...	7.500e^-5	0.7	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8540420	2L_8540420_SNP [dm3] 2L_8540420_SNP [dm6]	A	G	7.540e^-5	0.7	INTRON CG17834
2R	18015169	2R_18015169_SNP [dm3] 2R_22127664_SNP [dm6]	A	G	7.755e^-5	0.7	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
X	12533985	X_12533985_SNP [dm3] X_12639952_SNP [dm6]	G	A	7.773e^-5	0.7	INTRON Tomosyn
3L	12769930	3L_12769930_SNP [dm3] 3L_12776830_SNP [dm6]	G	C	7.808e^-5	0.7	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2L	504109	2L_504109_SNP [dm3] 2L_504109_SNP [dm6]	G	C	7.858e^-5	0.7	INTRON ush
3L	4142355	3L_4142355_SNP [dm3] 3L_4142355_SNP [dm6]	T	A	7.865e^-5	0.7	UPSTREAM CG32260 DOWNSTREAM Ras64B & 1 other INTERGENIC
2L	8504057	2L_8504057_SNP [dm3] 2L_8504057_SNP [dm6]	G	A	7.925e^-5	0.7	INTRON Dh31
2L	15193927	2L_15193927_SNP [dm3] 2L_15193927_SNP [dm6]	C	A	8.110e^-5	0.7	INTRON CG4168
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	8.200e^-5	0.7	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20022912	2R_20022912_SNP [dm3] 2R_24135389_SNP [dm6]	T	C	8.238e^-5	0.7	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3R	2299036	3R_2299036_SNP [dm3] 3R_6473314_SNP [dm6]	G	A	8.240e^-5	0.7	INTERGENIC
X	12364194	X_12364194_SNP [dm3] X_12470161_SNP [dm6]	T	C	8.268e^-5	0.7	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9388639	2L_9388639_SNP [dm3] 2L_9388639_SNP [dm6]	T	C	8.291e^-5	0.7	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2750488	2L_2750488_SNP [dm3] 2L_2750488_SNP [dm6]	T	A	8.408e^-5	0.7	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15475414	3R_15475414_SNP [dm3] 3R_19649692_SNP [dm6]	A	G	8.420e^-5	0.7	NON_SYNONYMOUS_CODING CG31220	TF binding site mE1_TFBS_sens
2L	2939007	2L_2939007_SNP [dm3] 2L_2939007_SNP [dm6]	C	A	8.429e^-5	0.7	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	5385812	2L_5385812_SNP [dm3] 2L_5385812_SNP [dm6]	G	A	8.429e^-5	0.7	INTERGENIC
3R	19613428	3R_19613428_SNP [dm3] 3R_23787706_SNP [dm6]	C	T	8.463e^-5	0.7	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
X	12261105	X_12261105_SNP [dm3] X_12367072_SNP [dm6]	G	T	8.599e^-5	0.7	INTERGENIC
2L	15567605	2L_15567605_SNP [dm3] 2L_15567605_SNP [dm6]	G	T	8.610e^-5	0.7	INTRON kek3
2R	12780173	2R_12780173_SNP [dm3] 2R_16892668_SNP [dm6]	A	G	8.626e^-5	0.7	INTRON CG8910	TF binding site mE1_TFBS_inv
2R	12780196	2R_12780196_SNP [dm3] 2R_16892691_SNP [dm6]	A	G	8.626e^-5	0.7	INTRON CG8910	TF binding site mE1_TFBS_inv
2R	18015182	2R_18015182_SNP [dm3] 2R_22127677_SNP [dm6]	C	T	8.699e^-5	0.7	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	26943202	3R_26943202_SNP [dm3] 3R_31117480_SNP [dm6]	A	T	8.734e^-5	0.7	INTERGENIC
2L	3495009	2L_3495009_SNP [dm3] 2L_3495009_SNP [dm6]	T	G	8.752e^-5	0.7	INTRON tim
2L	7030304	2L_7030304_SNP [dm3] 2L_7030304_SNP [dm6]	T	A	8.754e^-5	0.7	DOWNSTREAM Rab30 INTERGENIC
2R	19232285	2R_19232285_SNP [dm3] 2R_23344762_SNP [dm6]	G	C	8.769e^-5	0.7	NON_SYNONYMOUS_CODING CG3502
3R	14275435	3R_14275435_SNP [dm3] 3R_18449713_SNP [dm6]	G	C	8.850e^-5	0.7	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	8.850e^-5	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15812327	3R_15812327_SNP [dm3] 3R_19986605_SNP [dm6]	A	T	8.900e^-5	0.7	INTRON Hs6st
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	8.983e^-5	0.7	INTRON tmod	TF binding site BDTNP1_TFBS_dl
3L	10423391	3L_10423391_SNP [dm3] 3L_10430291_SNP [dm6]	C	T	8.993e^-5	0.7	NON_SYNONYMOUS_CODING Ir67b
2R	6077523	2R_6077523_SNP [dm3] 2R_10190018_SNP [dm6]	A	G	9.056e^-5	0.7	INTRON KCNQ
2R	16763228	2R_16763228_SNP [dm3] 2R_20875723_SNP [dm6]	T	C	9.074e^-5	0.7	INTRON Ipk1
3L	1411510	3L_1411510_SNP [dm3] 3L_1411510_SNP [dm6]	C	T	9.116e^-5	0.7	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4312483	2L_4312483_SNP [dm3] 2L_4312483_SNP [dm6]	C	T	9.118e^-5	0.7	INTRON tutl
2R	20022896	2R_20022896_SNP [dm3] 2R_24135373_SNP [dm6]	A	T	9.123e^-5	0.7	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3L	18429534	3L_18429534_DEL [dm3] 3L_18436434_DEL [dm6]	AA	A	9.135e^-5	0.7	INTERGENIC
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	9.155e^-5	0.7	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12641238	3L_12641238_SNP [dm3] 3L_12648138_SNP [dm6]	T	G	9.202e^-5	0.7	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6082598	2R_6082598_SNP [dm3] 2R_10195093_SNP [dm6]	G	T	9.235e^-5	0.7	INTERGENIC
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	9.250e^-5	0.7	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2L	12922902	2L_12922902_SNP [dm3] 2L_12922902_SNP [dm6]	G	A	9.268e^-5	0.7	NON_SYNONYMOUS_CODING ACXA SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	17437177	3L_17437177_SNP [dm3] 3L_17444077_SNP [dm6]	T	C	9.272e^-5	0.7	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18917120	3R_18917120_SNP [dm3] 3R_23091398_SNP [dm6]	C	G	9.284e^-5	0.7	UPSTREAM CG6726 & 1 other INTRON CG13830
3R	8111306	3R_8111306_SNP [dm3] 3R_12285584_SNP [dm6]	C	T	9.329e^-5	0.7	INTRON svp
2R	13405958	2R_13405958_SNP [dm3] 2R_17518453_SNP [dm6]	T	G	9.377e^-5	0.7	UPSTREAM APC10 DOWNSTREAM Patronin INTRON CG4866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13022818	2L_13022818_SNP [dm3] 2L_13022818_SNP [dm6]	G	T	9.404e^-5	0.7	UTR_3_PRIME CG9932
3L	12769980	3L_12769980_SNP [dm3] 3L_12776880_SNP [dm6]	G	T	9.413e^-5	0.7	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
2L	15993458	2L_15993458_SNP [dm3] 2L_15993458_SNP [dm6]	G	C	9.426e^-5	0.7	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12261543	X_12261543_SNP [dm3] X_12367510_SNP [dm6]	G	A	9.443e^-5	0.7	INTERGENIC
2R	7677168	2R_7677168_SNP [dm3] 2R_11789663_SNP [dm6]	T	A	9.446e^-5	0.7	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7677154	2R_7677154_SNP [dm3] 2R_11789649_SNP [dm6]	T	C	9.450e^-5	0.7	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12283013	2L_12283013_SNP [dm3] 2L_12283013_SNP [dm6]	C	A	9.511e^-5	0.7	INTRON aret
2R	13184445	2R_13184445_SNP [dm3] 2R_17296940_SNP [dm6]	T	G	9.554e^-5	0.7	INTRON mbl
2L	1746146	2L_1746146_SNP [dm3] 2L_1746146_SNP [dm6]	C	A	9.559e^-5	0.7	INTRON CG17646
2L	5382237	2L_5382237_SNP [dm3] 2L_5382237_SNP [dm6]	T	C	9.616e^-5	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8531671	2L_8531671_SNP [dm3] 2L_8531671_SNP [dm6]	A	T	9.782e^-5	0.71	INTRON CG17834
2L	15458384	2L_15458384_SNP [dm3] 2L_15458384_SNP [dm6]	T	C	9.826e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24819887	3R_24819887_SNP [dm3] 3R_28994165_SNP [dm6]	G	C	9.858e^-5	0.71	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11031363	3L_11031363_SNP [dm3] 3L_11038263_SNP [dm6]	C	T	9.894e^-5	0.71	SYNONYMOUS_CODING CG43693
2L	12878073	2L_12878073_SNP [dm3] 2L_12878073_SNP [dm6]	C	T	9.997e^-5	0.71	INTERGENIC
3L	12918742	3L_12918742_SNP [dm3] 3L_12925642_SNP [dm6]	A	G	1.001e^-4	0.71	INTERGENIC
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	1.003e^-4	0.71	INTRON CG8910
2L	8540407	2L_8540407_SNP [dm3] 2L_8540407_SNP [dm6]	T	A	1.003e^-4	0.71	INTRON CG17834
2L	4911521	2L_4911521_DEL [dm3] 2L_4911521_DEL [dm6]	TA	C	1.010e^-4	0.712	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12066968	3L_12066968_SNP [dm3] 3L_12073868_SNP [dm6]	G	C	1.020e^-4	0.716	INTRON Sema-5c
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	1.024e^-4	0.717	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3R	25418008	3R_25418008_SNP [dm3] 3R_29592286_SNP [dm6]	C	T	1.034e^-4	0.719	UPSTREAM alph INTRON alph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	19600752	3R_19600752_SNP [dm3] 3R_23775030_SNP [dm6]	A	C	1.044e^-4	0.719	UPSTREAM CG10208 INTRON Nup98-96	TF binding site mE1_TFBS_HSA
3L	8880104	3L_8880104_SNP [dm3] 3L_8887004_SNP [dm6]	T	C	1.044e^-4	0.719	INTRON dally
3R	25417994	3R_25417994_SNP [dm3] 3R_29592272_SNP [dm6]	A	T	1.051e^-4	0.719	UPSTREAM alph INTRON alph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	13512518	2R_13512518_SNP [dm3] 2R_17625013_SNP [dm6]	G	T	1.055e^-4	0.719	INTRON CG10936
2R	11624601	2R_11624601_SNP [dm3] 2R_15737096_SNP [dm6]	C	A	1.057e^-4	0.719	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10378520	3R_10378520_SNP [dm3] 3R_14552798_SNP [dm6]	T	C	1.062e^-4	0.719	INTRON Pde6
2L	2496040	2L_2496040_SNP [dm3] 2L_2496040_SNP [dm6]	G	T	1.064e^-4	0.719	INTRON oaf
2R	7443254	2R_7443254_SNP [dm3] 2R_11555749_SNP [dm6]	C	A	1.070e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1817627	3R_1817627_SNP [dm3] 3R_5991905_SNP [dm6]	G	A	1.072e^-4	0.719	INTERGENIC
2R	18015363	2R_18015363_SNP [dm3] 2R_22127858_SNP [dm6]	T	A	1.077e^-4	0.719	NON_SYNONYMOUS_CODING NtR UPSTREAM GM130	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	9686521	2R_9686521_SNP [dm3] 2R_13799016_SNP [dm6]	T	C	1.079e^-4	0.719	INTRON Cpr50Cb
3L	7092991	3L_7092991_SNP [dm3] 3L_7099891_SNP [dm6]	G	A	1.079e^-4	0.719	INTRON form3
2R	11882961	2R_11882961_SNP [dm3] 2R_15995456_SNP [dm6]	T	A	1.086e^-4	0.719	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo
2L	1344206	2L_1344206_SNP [dm3] 2L_1344206_SNP [dm6]	A	T	1.088e^-4	0.719	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	7976344	3L_7976344_SNP [dm3] 3L_7983244_SNP [dm6]	C	G	1.091e^-4	0.719	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16588237	3R_16588237_SNP [dm3] 3R_20762515_SNP [dm6]	G	C	1.093e^-4	0.719	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3778614	2R_3778614_SNP [dm3] 2R_7891109_SNP [dm6]	C	A	1.111e^-4	0.728	INTRON CG30377
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	1.117e^-4	0.728	INTERGENIC
2L	1241020	2L_1241020_INS [dm3] 2L_1241020_INS [dm6]	A	ATGATCTA	1.118e^-4	0.728	INTRON CG5397	TF binding site mE1_TFBS_chinmo
2L	6402237	2L_6402237_SNP [dm3] 2L_6402237_SNP [dm6]	T	A	1.126e^-4	0.731	INTRON CG42368
2L	3700643	2L_3700643_SNP [dm3] 2L_3700643_SNP [dm6]	A	G	1.142e^-4	0.739	UTR_3_PRIME CG42465 UPSTREAM Sfp24C1 & 1 other DOWNSTREAM CG42464
2L	4171014	2L_4171014_SNP [dm3] 2L_4171014_SNP [dm6]	A	T	1.159e^-4	0.744	INTERGENIC
2R	14618020	2R_14618020_SNP [dm3] 2R_18730515_SNP [dm6]	T	A	1.161e^-4	0.744	UPSTREAM List INTRON Hs3st-A
3L	8537167	3L_8537167_SNP [dm3] 3L_8544067_SNP [dm6]	T	C	1.163e^-4	0.744	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6402238	2L_6402238_SNP [dm3] 2L_6402238_SNP [dm6]	G	A	1.178e^-4	0.747	INTRON CG42368
2R	7000690	2R_7000690_DEL [dm3] 2R_11113185_DEL [dm6]	AATTACTACA	A	1.179e^-4	0.747	INTRON luna
3R	8286850	3R_8286850_SNP [dm3] 3R_12461128_SNP [dm6]	G	A	1.180e^-4	0.747	SYNONYMOUS_CODING CG12267 UPSTREAM CG5961	TF binding site mE1_TFBS_inv
2R	9686512	2R_9686512_SNP [dm3] 2R_13799007_SNP [dm6]	C	T	1.183e^-4	0.747	INTRON Cpr50Cb
2L	8078470	2L_8078470_SNP [dm3] 2L_8078470_SNP [dm6]	G	A	1.193e^-4	0.751	SYNONYMOUS_CODING Mcr
2L	15734589	2L_15734589_SNP [dm3] 2L_15734589_SNP [dm6]	C	G	1.209e^-4	0.753	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	2260373	3L_2260373_SNP [dm3] 3L_2260373_SNP [dm6]	G	A	1.211e^-4	0.753	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13655166	3R_13655166_SNP [dm3] 3R_17829444_SNP [dm6]	G	T	1.212e^-4	0.753	INTRON tinc
2L	2618830	2L_2618830_SNP [dm3] 2L_2618830_SNP [dm6]	G	A	1.216e^-4	0.753	INTERGENIC
3L	5985880	3L_5985880_SNP [dm3] 3L_5992780_SNP [dm6]	C	A	1.216e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	18262312	2R_18262312_SNP [dm3] 2R_22374807_SNP [dm6]	G	A	1.221e^-4	0.754	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7631345	3L_7631345_SNP [dm3] 3L_7638245_SNP [dm6]	C	T	1.227e^-4	0.754	SYNONYMOUS_CODING CG33275
2R	18261102	2R_18261102_SNP [dm3] 2R_22373597_SNP [dm6]	A	T	1.237e^-4	0.758	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8386441	3L_8386441_SNP [dm3] 3L_8393341_SNP [dm6]	G	A	1.248e^-4	0.761	SYNONYMOUS_CODING Jon66Cii DOWNSTREAM Jon66Ci	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5783798	2R_5783798_SNP [dm3] 2R_9896293_SNP [dm6]	G	T	1.250e^-4	0.761	NON_SYNONYMOUS_CODING CG30007
2R	6213471	2R_6213471_SNP [dm3] 2R_10325966_SNP [dm6]	G	C	1.258e^-4	0.764	INTRON CG42732
2L	6402187	2L_6402187_SNP [dm3] 2L_6402187_SNP [dm6]	A	T	1.280e^-4	0.767	INTRON CG42368
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	1.280e^-4	0.767	INTRON CG18208
2L	15993462	2L_15993462_SNP [dm3] 2L_15993462_SNP [dm6]	T	C	1.284e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4142796	3L_4142796_SNP [dm3] 3L_4142796_SNP [dm6]	C	T	1.285e^-4	0.767	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	4142801	3L_4142801_SNP [dm3] 3L_4142801_SNP [dm6]	G	A	1.285e^-4	0.767	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3L	8151739	3L_8151739_SNP [dm3] 3L_8158639_SNP [dm6]	C	T	1.294e^-4	0.767	UTR_5_PRIME CG42445 DOWNSTREAM CG43886 INTRON CG42445
2L	1586265	2L_1586265_SNP [dm3] 2L_1586265_SNP [dm6]	T	C	1.295e^-4	0.767	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site BDTNP1_TFBS_sna
X	3006827	X_3006827_SNP [dm3] X_3112794_SNP [dm6]	A	T	1.297e^-4	0.767	INTRON kirre
3L	8537202	3L_8537202_SNP [dm3] 3L_8544102_SNP [dm6]	T	C	1.315e^-4	0.776	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5763605	2R_5763605_SNP [dm3] 2R_9876100_SNP [dm6]	T	G	1.333e^-4	0.782	UTR_3_PRIME CG12744 DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20022898	2R_20022898_SNP [dm3] 2R_24135375_SNP [dm6]	T	C	1.343e^-4	0.782	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
3L	18543148	3L_18543148_SNP [dm3] 3L_18550048_SNP [dm6]	A	G	1.343e^-4	0.782	INTERGENIC
2L	6243818	2L_6243818_SNP [dm3] 2L_6243818_SNP [dm6]	G	A	1.347e^-4	0.782	INTERGENIC
X	11821855	X_11821855_SNP [dm3] X_11927822_SNP [dm6]	G	A	1.349e^-4	0.782	SYNONYMOUS_CODING CG10362
2L	16483589	2L_16483589_DEL [dm3] 2L_16483589_DEL [dm6]	ATTTAATCGTATTCAAAAGC...	A	1.353e^-4	0.782	INTRON dac	regulatory region REDfly_CRMs TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_jumu
3R	16588210	3R_16588210_SNP [dm3] 3R_20762488_SNP [dm6]	A	G	1.361e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5762331	2R_5762331_SNP [dm3] 2R_9874826_SNP [dm6]	C	G	1.364e^-4	0.782	UTR_5_PRIME cbx UPSTREAM CG12744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	615825	2L_615825_SNP [dm3] 2L_615825_SNP [dm6]	T	A	1.367e^-4	0.782	INTERGENIC
2L	15467017	2L_15467017_SNP [dm3] 2L_15467017_SNP [dm6]	T	A	1.374e^-4	0.782	INTERGENIC
2R	8482186	2R_8482186_SNP [dm3] 2R_12594681_SNP [dm6]	C	T	1.381e^-4	0.782	UPSTREAM CR45279 INTRON Amph EXON CR43909	TF binding site BDTNP1_TFBS_dl
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	1.393e^-4	0.782	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18262693	2R_18262693_SNP [dm3] 2R_22375188_SNP [dm6]	G	T	1.399e^-4	0.782	START_GAINED Rtf1 UTR_5_PRIME Rtf1 UPSTREAM CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8503971	2L_8503971_DEL [dm3] 2L_8503971_DEL [dm6]	AATTCATGCAGGGTTCGTT...	A	1.403e^-4	0.782	INTRON Dh31
3R	7768663	3R_7768663_SNP [dm3] 3R_11942941_SNP [dm6]	C	A	1.408e^-4	0.782	INTRON Cad87A
3R	12630657	3R_12630657_SNP [dm3] 3R_16804935_SNP [dm6]	C	T	1.412e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6243809	2L_6243809_SNP [dm3] 2L_6243809_SNP [dm6]	C	T	1.412e^-4	0.782	INTERGENIC
2L	15467024	2L_15467024_DEL [dm3] 2L_15467024_DEL [dm6]	AA	A	1.422e^-4	0.782	INTERGENIC
X	5579440	X_5579440_DEL [dm3] X_5685407_DEL [dm6]	GTAAG	G	1.427e^-4	0.782	UTR_3_PRIME CG3160 DOWNSTREAM CG42449
3R	7656902	3R_7656902_SNP [dm3] 3R_11831180_SNP [dm6]	C	T	1.430e^-4	0.782	INTRON CG6959
2L	7232742	2L_7232742_SNP [dm3] 2L_7232742_SNP [dm6]	T	A	1.437e^-4	0.782	UTR_5_PRIME CG43800 INTRON Ndae1 & 1 other
3R	701696	3R_701696_SNP [dm3] 3R_4875974_SNP [dm6]	A	G	1.441e^-4	0.782	DOWNSTREAM laf INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10413559	3L_10413559_SNP [dm3] 3L_10420459_SNP [dm6]	A	G	1.442e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18917143	3R_18917143_SNP [dm3] 3R_23091421_SNP [dm6]	G	A	1.447e^-4	0.782	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2R	18260119	2R_18260119_SNP [dm3] 2R_22372614_SNP [dm6]	T	C	1.451e^-4	0.782	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	14773752	2L_14773752_SNP [dm3] 2L_14773752_SNP [dm6]	T	G	1.460e^-4	0.782	DOWNSTREAM CG4650 INTERGENIC
2L	14773759	2L_14773759_SNP [dm3] 2L_14773759_SNP [dm6]	A	T	1.460e^-4	0.782	DOWNSTREAM CG4650 INTERGENIC
3R	18917147	3R_18917147_SNP [dm3] 3R_23091425_SNP [dm6]	T	A	1.463e^-4	0.782	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	1.463e^-4	0.782	INTERGENIC	regulatory region REDfly_CRMs
3L	2381180	3L_2381180_SNP [dm3] 3L_2381180_SNP [dm6]	G	C	1.463e^-4	0.782	INTRON CG45186
2L	2501012	2L_2501012_SNP [dm3] 2L_2501012_SNP [dm6]	A	C	1.472e^-4	0.782	INTERGENIC
2L	19084511	2L_19084511_SNP [dm3] 2L_19084511_SNP [dm6]	G	A	1.478e^-4	0.782	INTRON Lim3	TF binding site BDTNP1_TFBS_dl
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	1.483e^-4	0.782	INTRON par-1
2L	8503802	2L_8503802_SNP [dm3] 2L_8503802_SNP [dm6]	A	T	1.484e^-4	0.782	INTRON Dh31
3R	23291390	3R_23291390_SNP [dm3] 3R_27465668_SNP [dm6]	G	A	1.490e^-4	0.782	NON_SYNONYMOUS_CODING CG13978
3L	2545639	3L_2545639_SNP [dm3] 3L_2545639_SNP [dm6]	C	T	1.499e^-4	0.782	INTRON Spn
3R	3455608	3R_3455608_SNP [dm3] 3R_7629886_SNP [dm6]	A	G	1.511e^-4	0.782	INTRON CG34127	TF binding site mE1_TFBS_inv
X	16065101	X_16065101_SNP [dm3] X_16171068_SNP [dm6]	G	C	1.514e^-4	0.782	INTERGENIC
3R	27711347	3R_27711347_SNP [dm3] 3R_31885625_SNP [dm6]	A	C	1.515e^-4	0.782	INTRON heph	TF binding site mE1_TFBS_Trl
3L	4050337	3L_4050337_SNP [dm3] 3L_4050337_SNP [dm6]	T	C	1.530e^-4	0.782	INTRON CG1136	TF binding site mE1_TFBS_inv
2L	8078110	2L_8078110_SNP [dm3] 2L_8078110_SNP [dm6]	T	C	1.531e^-4	0.782	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	1.531e^-4	0.782	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16388747	3R_16388747_SNP [dm3] 3R_20563025_SNP [dm6]	G	T	1.533e^-4	0.782	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25285022	3R_25285022_SNP [dm3] 3R_29459300_SNP [dm6]	T	C	1.533e^-4	0.782	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	11517955	X_11517955_SNP [dm3] X_11623922_SNP [dm6]	C	T	1.537e^-4	0.782	START_GAINED Ptp10D UTR_5_PRIME Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17396794	3R_17396794_SNP [dm3] 3R_21571072_SNP [dm6]	C	T	1.550e^-4	0.782	UTR_3_PRIME InR
2L	1630207	2L_1630207_SNP [dm3] 2L_1630207_SNP [dm6]	C	G	1.551e^-4	0.782	INTERGENIC
2L	1630218	2L_1630218_SNP [dm3] 2L_1630218_SNP [dm6]	C	A	1.551e^-4	0.782	INTERGENIC
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	1.564e^-4	0.782	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15972565	3R_15972565_SNP [dm3] 3R_20146843_SNP [dm6]	G	C	1.565e^-4	0.782	INTERGENIC
3L	3920676	3L_3920676_SNP [dm3] 3L_3920676_SNP [dm6]	G	A	1.570e^-4	0.782	INTRON Eip63F-1
3L	9367230	3L_9367230_SNP [dm3] 3L_9374130_SNP [dm6]	A	G	1.582e^-4	0.782	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	6078901	2R_6078901_SNP [dm3] 2R_10191396_SNP [dm6]	C	T	1.606e^-4	0.782	INTRON KCNQ
2L	3502402	2L_3502402_SNP [dm3] 2L_3502402_SNP [dm6]	C	T	1.608e^-4	0.782	INTRON tim
2R	12558935	2R_12558935_SNP [dm3] 2R_16671430_SNP [dm6]	G	A	1.620e^-4	0.782	SYNONYMOUS_CODING CG34457 UPSTREAM CG34458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14960664	3R_14960664_SNP [dm3] 3R_19134942_SNP [dm6]	C	T	1.623e^-4	0.782	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3L	5985899	3L_5985899_SNP [dm3] 3L_5992799_SNP [dm6]	C	T	1.628e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	1235884	2L_1235884_SNP [dm3] 2L_1235884_SNP [dm6]	A	T	1.646e^-4	0.782	INTERGENIC
3R	26415973	3R_26415973_SNP [dm3] 3R_30590251_SNP [dm6]	A	G	1.658e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20191483	3R_20191483_SNP [dm3] 3R_24365761_SNP [dm6]	C	T	1.658e^-4	0.782	NON_SYNONYMOUS_CODING CG13613 UPSTREAM CG17784 DOWNSTREAM CG42811
3R	4578432	3R_4578432_SNP [dm3] 3R_8752710_SNP [dm6]	C	T	1.659e^-4	0.782	SYNONYMOUS_CODING CG8223 UTR_5_PRIME CG34135 UTR_3_PRIME CG11768	TF binding site mE1_TFBS_cad
2R	13042890	2R_13042890_SNP [dm3] 2R_17155385_SNP [dm6]	C	T	1.663e^-4	0.782	UTR_3_PRIME CG17290 DOWNSTREAM CG17290
3R	16588185	3R_16588185_DEL [dm3] 3R_20762463_DEL [dm6]	TA	T	1.663e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	1.664e^-4	0.782	DOWNSTREAM primo-2 & 2 others INTRON CG31469
2L	19084501	2L_19084501_SNP [dm3] 2L_19084501_SNP [dm6]	A	G	1.668e^-4	0.782	INTRON Lim3	TF binding site BDTNP1_TFBS_dl
3L	22600666	3L_22600666_SNP [dm3] 3L_22607566_SNP [dm6]	G	A	1.670e^-4	0.782	DOWNSTREAM CG6914 INTRON CG14459
3R	23257976	3R_23257976_SNP [dm3] 3R_27432254_SNP [dm6]	A	G	1.671e^-4	0.782	INTRON side
X	6332117	X_6332117_SNP [dm3] X_6438084_SNP [dm6]	T	C	1.690e^-4	0.782	INTRON CG42340
3R	8148715	3R_8148715_SNP [dm3] 3R_12322993_SNP [dm6]	A	C	1.691e^-4	0.782	UPSTREAM CG10013 & 1 other INTERGENIC
3L	8880139	3L_8880139_DEL [dm3] 3L_8887039_DEL [dm6]	TC	A	1.702e^-4	0.782	INTRON dally
3L	12641244	3L_12641244_SNP [dm3] 3L_12648144_SNP [dm6]	G	A	1.704e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21990298	3R_21990298_SNP [dm3] 3R_26164576_SNP [dm6]	T	A	1.705e^-4	0.782	INTERGENIC
3R	21990322	3R_21990322_SNP [dm3] 3R_26164600_SNP [dm6]	T	G	1.705e^-4	0.782	INTERGENIC
3L	5759701	3L_5759701_SNP [dm3] 3L_5766601_SNP [dm6]	T	C	1.708e^-4	0.782	SYNONYMOUS_CODING Txl UPSTREAM CG10576 DOWNSTREAM Ppat-Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12486208	3L_12486208_SNP [dm3] 3L_12493108_SNP [dm6]	C	T	1.714e^-4	0.782	SYNONYMOUS_CODING CG10657 EXON CR45682	TF binding site mE1_TFBS_cad
3L	12641249	3L_12641249_SNP [dm3] 3L_12648149_SNP [dm6]	A	G	1.715e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9639851	2R_9639851_SNP [dm3] 2R_13752346_SNP [dm6]	T	C	1.721e^-4	0.782	INTERGENIC
2R	12026433	2R_12026433_SNP [dm3] 2R_16138928_SNP [dm6]	A	G	1.721e^-4	0.782	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21791448	3R_21791448_SNP [dm3] 3R_25965726_SNP [dm6]	T	C	1.725e^-4	0.782	SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26943149	3R_26943149_SNP [dm3] 3R_31117427_SNP [dm6]	C	T	1.734e^-4	0.782	INTERGENIC
3R	26943217	3R_26943217_SNP [dm3] 3R_31117495_SNP [dm6]	G	C	1.734e^-4	0.782	INTERGENIC
2L	7182943	2L_7182943_SNP [dm3] 2L_7182943_SNP [dm6]	A	T	1.738e^-4	0.782	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
2L	12875632	2L_12875632_DEL [dm3] 2L_12875632_DEL [dm6]	GA	G	1.741e^-4	0.782	INTERGENIC
2R	14088600	2R_14088600_SNP [dm3] 2R_18201095_SNP [dm6]	G	T	1.742e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	1.756e^-4	0.782	NON_SYNONYMOUS_CODING CG30007
3R	26942871	3R_26942871_SNP [dm3] 3R_31117149_SNP [dm6]	T	C	1.760e^-4	0.782	INTERGENIC
2L	15993453	2L_15993453_SNP [dm3] 2L_15993453_SNP [dm6]	A	C	1.762e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3223711	X_3223711_SNP [dm3] X_3329678_SNP [dm6]	G	T	1.767e^-4	0.782	START_GAINED dnc UTR_5_PRIME dnc INTRON CR44886 & 1 other
3L	12641247	3L_12641247_SNP [dm3] 3L_12648147_SNP [dm6]	A	C	1.772e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12013129	X_12013129_INS [dm3] X_12119096_INS [dm6]	T	TTTTAGGCCCCT...	1.773e^-4	0.782	INTRON Ten-a
2R	9664326	2R_9664326_SNP [dm3] 2R_13776821_SNP [dm6]	C	T	1.774e^-4	0.782	INTRON Cpr50Ca
3L	1630535	3L_1630535_SNP [dm3] 3L_1630535_SNP [dm6]	T	G	1.779e^-4	0.782	UTR_3_PRIME nSyb
2R	12779940	2R_12779940_SNP [dm3] 2R_16892435_SNP [dm6]	G	A	1.782e^-4	0.782	INTRON CG8910	TF binding site mE1_TFBS_inv
3L	22557265	3L_22557265_SNP [dm3] 3L_22564165_SNP [dm6]	G	T	1.783e^-4	0.782	INTERGENIC
2R	8688000	2R_8688000_SNP [dm3] 2R_12800495_SNP [dm6]	C	T	1.788e^-4	0.782	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8503801	2L_8503801_SNP [dm3] 2L_8503801_SNP [dm6]	G	A	1.789e^-4	0.782	INTRON Dh31
3R	25817054	3R_25817054_SNP [dm3] 3R_29991332_SNP [dm6]	G	A	1.791e^-4	0.782	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
3R	18917160	3R_18917160_DEL [dm3] 3R_23091438_DEL [dm6]	CAA	GT	1.810e^-4	0.782	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
3L	8799717	3L_8799717_DEL [dm3] 3L_8806617_DEL [dm6]	TCTCCA	T	1.816e^-4	0.782	UPSTREAM CG32024 DOWNSTREAM CG34427 INTRON CG13312	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	8503788	2L_8503788_SNP [dm3] 2L_8503788_SNP [dm6]	A	G	1.817e^-4	0.782	INTRON Dh31
2L	8503798	2L_8503798_SNP [dm3] 2L_8503798_SNP [dm6]	A	G	1.817e^-4	0.782	INTRON Dh31
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	1.828e^-4	0.782	INTRON CG17834	TF binding site mE1_TFBS_HSA
3R	18917168	3R_18917168_DEL [dm3] 3R_23091446_DEL [dm6]	TTTTT	T	1.834e^-4	0.782	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	1.838e^-4	0.782	INTRON Dh31
3R	6462560	3R_6462560_SNP [dm3] 3R_10636838_SNP [dm6]	C	T	1.841e^-4	0.782	INTRON hth
3R	7305627	3R_7305627_SNP [dm3] 3R_11479905_SNP [dm6]	C	T	1.851e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5657632	2L_5657632_SNP [dm3] 2L_5657632_SNP [dm6]	T	C	1.854e^-4	0.782	INTRON CG31646
2L	8345490	2L_8345490_DEL [dm3] 2L_8345490_DEL [dm6]	AGGGCCGAGTGTTATTTAAA...	A	1.863e^-4	0.782	UPSTREAM CR45371 INTERGENIC
X	12261070	X_12261070_SNP [dm3] X_12367037_SNP [dm6]	C	T	1.872e^-4	0.782	INTERGENIC
3R	21990293	3R_21990293_SNP [dm3] 3R_26164571_SNP [dm6]	G	A	1.875e^-4	0.782	INTERGENIC
X	6264497	X_6264497_SNP [dm3] X_6370464_SNP [dm6]	A	G	1.877e^-4	0.782	UTR_3_PRIME Marf DOWNSTREAM CR44816 & 1 other
3R	14960689	3R_14960689_SNP [dm3] 3R_19134967_SNP [dm6]	G	A	1.883e^-4	0.782	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3L	7631324	3L_7631324_SNP [dm3] 3L_7638224_SNP [dm6]	G	A	1.885e^-4	0.782	SYNONYMOUS_CODING CG33275
3R	15049616	3R_15049616_SNP [dm3] 3R_19223894_SNP [dm6]	A	G	1.887e^-4	0.782	INTRON vib
3R	26926765	3R_26926765_SNP [dm3] 3R_31101043_SNP [dm6]	G	A	1.890e^-4	0.782	NON_SYNONYMOUS_CODING CG15553
3L	5510032	3L_5510032_SNP [dm3] 3L_5516932_SNP [dm6]	T	G	1.893e^-4	0.782	INTRON Lkr
3R	4579245	3R_4579245_SNP [dm3] 3R_8753523_SNP [dm6]	C	G	1.898e^-4	0.782	SPLICE_SITE_REGION CG8223 SYNONYMOUS_CODING CG8223 UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 UPSTREAM CG34135 & 1 other DOWNSTREAM CG11768	TF binding site mE1_TFBS_cad
3R	20326189	3R_20326189_SNP [dm3] 3R_24500467_SNP [dm6]	A	G	1.899e^-4	0.782	INTERGENIC
2R	18890087	2R_18890087_SNP [dm3] 2R_23002564_SNP [dm6]	C	A	1.900e^-4	0.782	INTRON twi	TF binding site mE1_TFBS_bab1
2R	14227634	2R_14227634_INS [dm3] 2R_18340129_INS [dm6]	C	CC	1.906e^-4	0.782	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11750962	2R_11750962_SNP [dm3] 2R_15863457_SNP [dm6]	T	C	1.914e^-4	0.782	UPSTREAM Gpo-1 DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2928864	2L_2928864_SNP [dm3] 2L_2928864_SNP [dm6]	T	G	1.922e^-4	0.782	INTRON lilli
3R	25114878	3R_25114878_SNP [dm3] 3R_29289156_SNP [dm6]	G	T	1.925e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22845527	3R_22845527_SNP [dm3] 3R_27019805_SNP [dm6]	C	T	1.941e^-4	0.782	UPSTREAM CG17191 DOWNSTREAM CG6283 INTRON RYa-R
2L	4896499	2L_4896499_SNP [dm3] 2L_4896499_SNP [dm6]	G	T	1.951e^-4	0.782	INTRON CG3036
3R	10767885	3R_10767885_SNP [dm3] 3R_14942163_SNP [dm6]	G	T	1.964e^-4	0.782	INTERGENIC
2R	8688036	2R_8688036_SNP [dm3] 2R_12800531_SNP [dm6]	G	A	1.965e^-4	0.782	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10774088	3R_10774088_SNP [dm3] 3R_14948366_SNP [dm6]	T	C	1.970e^-4	0.782	INTERGENIC
2L	1344207	2L_1344207_DEL [dm3] 2L_1344207_DEL [dm6]	AAATATT	A	1.975e^-4	0.782	UPSTREAM Cdlc2 & 1 other INTERGENIC
3R	16434897	3R_16434897_SNP [dm3] 3R_20609175_SNP [dm6]	C	T	1.977e^-4	0.782	INTRON bon
2R	6082618	2R_6082618_SNP [dm3] 2R_10195113_SNP [dm6]	T	C	1.980e^-4	0.782	INTERGENIC
X	12009143	X_12009143_SNP [dm3] X_12115110_SNP [dm6]	A	T	1.982e^-4	0.782	INTRON CR43960 & 1 other
3R	9649463	3R_9649463_INS [dm3] 3R_13823741_INS [dm6]	T	TGTACCAAGT	1.993e^-4	0.782	INTERGENIC
2L	12877203	2L_12877203_SNP [dm3] 2L_12877203_SNP [dm6]	G	A	1.995e^-4	0.782	INTERGENIC
3R	16588253	3R_16588253_INS [dm3] 3R_20762531_INS [dm6]	T	TATTAT	2.001e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6990454	2R_6990454_SNP [dm3] 2R_11102949_SNP [dm6]	A	T	2.012e^-4	0.782	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	8286177	3R_8286177_INS [dm3] 3R_12460455_INS [dm6]	T	TT	2.016e^-4	0.782	UTR_5_PRIME CG12267 UPSTREAM CG12267 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12559137	2R_12559137_SNP [dm3] 2R_16671632_SNP [dm6]	A	G	2.018e^-4	0.782	UTR_3_PRIME CG34457 UPSTREAM CG34458
3R	17330073	3R_17330073_DEL [dm3] 3R_21504351_DEL [dm6]	GT	G	2.027e^-4	0.782	INTRON C15	TF binding site mE1_TFBS_chinmo
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	2.034e^-4	0.782	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	6369871	2L_6369871_SNP [dm3] 2L_6369871_SNP [dm6]	G	A	2.036e^-4	0.782	SYNONYMOUS_CODING CG9505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5152237	2R_5152237_SNP [dm3] 2R_9264732_SNP [dm6]	C	T	2.041e^-4	0.782	UPSTREAM CG34141 INTRON Pkn
X	7059927	X_7059927_SNP [dm3] X_7165894_SNP [dm6]	G	A	2.042e^-4	0.782	DOWNSTREAM CR44357 INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	9261693	3R_9261693_SNP [dm3] 3R_13435971_SNP [dm6]	G	A	2.044e^-4	0.782	UPSTREAM yrt INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
2R	7615582	2R_7615582_SNP [dm3] 2R_11728077_SNP [dm6]	G	A	2.046e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5651722	2L_5651722_SNP [dm3] 2L_5651722_SNP [dm6]	G	T	2.052e^-4	0.782	SYNONYMOUS_CODING CG31646
X	3006822	X_3006822_SNP [dm3] X_3112789_SNP [dm6]	C	T	2.058e^-4	0.782	INTRON kirre
2L	7442421	2L_7442421_DEL [dm3] 2L_7442421_DEL [dm6]	TATGCT	T	2.058e^-4	0.782	INTRON CG5973
3L	22601974	3L_22601974_SNP [dm3] 3L_22608874_SNP [dm6]	G	A	2.069e^-4	0.782	INTRON CG14459
2L	12924675	2L_12924675_SNP [dm3] 2L_12924675_SNP [dm6]	A	G	2.070e^-4	0.782	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA UPSTREAM ACXE
3R	8116113	3R_8116113_SNP [dm3] 3R_12290391_SNP [dm6]	A	C	2.076e^-4	0.782	INTRON svp
3R	26942376	3R_26942376_SNP [dm3] 3R_31116654_SNP [dm6]	A	G	2.078e^-4	0.782	INTERGENIC
3L	13156168	3L_13156168_SNP [dm3] 3L_13163068_SNP [dm6]	A	G	2.079e^-4	0.782	INTERGENIC
2L	8078101	2L_8078101_SNP [dm3] 2L_8078101_SNP [dm6]	G	A	2.081e^-4	0.782	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3R	2230573	3R_2230573_SNP [dm3] 3R_6404851_SNP [dm6]	T	C	2.085e^-4	0.782	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7251571	3L_7251571_SNP [dm3] 3L_7258471_SNP [dm6]	C	A	2.087e^-4	0.782	INTRON CG14830
X	8741317	X_8741317_SNP [dm3] X_8847284_SNP [dm6]	A	T	2.093e^-4	0.782	INTRON CG12075
2L	3900464	2L_3900464_SNP [dm3] 2L_3900464_SNP [dm6]	T	G	2.100e^-4	0.782	INTRON capu
3L	16930520	3L_16930520_SNP [dm3] 3L_16937420_SNP [dm6]	G	T	2.102e^-4	0.782	DOWNSTREAM CG13022 INTERGENIC
3L	10374609	3L_10374609_SNP [dm3] 3L_10381509_SNP [dm6]	A	G	2.112e^-4	0.782	INTERGENIC
3R	15997851	3R_15997851_SNP [dm3] 3R_20172129_SNP [dm6]	T	C	2.124e^-4	0.782	INTRON CG5023
2R	12614524	2R_12614524_INS [dm3] 2R_16727019_INS [dm6]	C	CGTTC	2.134e^-4	0.782	INTRON CG30463
3L	8295874	3L_8295874_SNP [dm3] 3L_8302774_SNP [dm6]	A	T	2.136e^-4	0.782	NON_SYNONYMOUS_CODING CG7194 DOWNSTREAM CG13671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3920070	3L_3920070_SNP [dm3] 3L_3920070_SNP [dm6]	T	A	2.143e^-4	0.782	INTRON Eip63F-1
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	2.145e^-4	0.782	INTRON Cad87A
2L	15039580	2L_15039580_SNP [dm3] 2L_15039580_SNP [dm6]	C	T	2.146e^-4	0.782	UTR_5_PRIME Su_H_ UPSTREAM CIAPIN1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6342025	2R_6342025_SNP [dm3] 2R_10454520_SNP [dm6]	A	T	2.147e^-4	0.782	INTRON Galphao & 1 other
3L	8867031	3L_8867031_SNP [dm3] 3L_8873931_SNP [dm6]	T	G	2.147e^-4	0.782	INTRON dally
2R	13079933	2R_13079933_SNP [dm3] 2R_17192428_SNP [dm6]	A	G	2.153e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14618027	2R_14618027_SNP [dm3] 2R_18730522_SNP [dm6]	G	A	2.153e^-4	0.782	UPSTREAM List INTRON Hs3st-A
3L	4104373	3L_4104373_SNP [dm3] 3L_4104373_SNP [dm6]	C	T	2.162e^-4	0.782	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16188952	2L_16188952_SNP [dm3] 2L_16188952_SNP [dm6]	T	A	2.162e^-4	0.782	INTRON Ca-alpha1D
2L	8078239	2L_8078239_SNP [dm3] 2L_8078239_SNP [dm6]	C	T	2.165e^-4	0.782	SYNONYMOUS_CODING Mcr
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	2.166e^-4	0.782	INTRON hoe1
3R	10183666	3R_10183666_SNP [dm3] 3R_14357944_SNP [dm6]	C	T	2.166e^-4	0.782	DOWNSTREAM CG31320 INTRON NK7.1
2R	5785899	2R_5785899_SNP [dm3] 2R_9898394_SNP [dm6]	A	C	2.166e^-4	0.782	NON_SYNONYMOUS_CODING CG30007 DOWNSTREAM CG1441 & 1 other
X	12723987	X_12723987_SNP [dm3] X_12829954_SNP [dm6]	G	A	2.177e^-4	0.782	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
2L	3297684	2L_3297684_SNP [dm3] 2L_3297684_SNP [dm6]	T	C	2.184e^-4	0.782	INTRON CG9663
3R	12643887	3R_12643887_SNP [dm3] 3R_16818165_SNP [dm6]	T	C	2.188e^-4	0.782	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7091594	3L_7091594_SNP [dm3] 3L_7098494_SNP [dm6]	G	T	2.200e^-4	0.782	INTRON form3
X	9236860	X_9236860_SNP [dm3] X_9342827_SNP [dm6]	A	G	2.204e^-4	0.782	INTRON CG34449
X	3265573	X_3265573_SNP [dm3] X_3371540_SNP [dm6]	A	C	2.207e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18363779	3L_18363779_SNP [dm3] 3L_18370679_SNP [dm6]	C	T	2.209e^-4	0.782	INTERGENIC
3L	11053510	3L_11053510_SNP [dm3] 3L_11060410_SNP [dm6]	T	G	2.209e^-4	0.782	DOWNSTREAM CG7888 INTRON CG6321
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	2.210e^-4	0.782	NON_SYNONYMOUS_CODING CG30007
2L	14693259	2L_14693259_SNP [dm3] 2L_14693259_SNP [dm6]	C	A	2.212e^-4	0.782	INTERGENIC
2L	12226651	2L_12226651_SNP [dm3] 2L_12226651_SNP [dm6]	G	A	2.212e^-4	0.782	INTRON aret
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	2.214e^-4	0.782	INTERGENIC
3L	15058624	3L_15058624_SNP [dm3] 3L_15065524_SNP [dm6]	T	C	2.231e^-4	0.782	UPSTREAM Sytbeta DOWNSTREAM cp309 INTERGENIC
3L	5957182	3L_5957182_SNP [dm3] 3L_5964082_SNP [dm6]	G	A	2.233e^-4	0.782	INTERGENIC
3L	5957189	3L_5957189_DEL [dm3] 3L_5964089_DEL [dm6]	ACTGAC	A	2.233e^-4	0.782	INTERGENIC
X	564235	X_564235_SNP [dm3] X_670202_SNP [dm6]	T	C	2.234e^-4	0.782	INTERGENIC
3L	11104271	3L_11104271_SNP [dm3] 3L_11111171_SNP [dm6]	C	T	2.235e^-4	0.782	INTRON CG7638	TF binding site mE1_TFBS_HSA
3R	26916466	3R_26916466_SNP [dm3] 3R_31090744_SNP [dm6]	C	A	2.248e^-4	0.782	UTR_3_PRIME CG11317
3L	12566246	3L_12566246_SNP [dm3] 3L_12573146_SNP [dm6]	T	C	2.253e^-4	0.782	UPSTREAM sowah INTERGENIC
3L	2546043	3L_2546043_SNP [dm3] 3L_2546043_SNP [dm6]	C	G	2.257e^-4	0.782	INTRON Spn
2R	6079855	2R_6079855_DEL [dm3] 2R_10192350_DEL [dm6]	GCGGAG	G	2.259e^-4	0.782	UTR_5_PRIME KCNQ	TF binding site mE1_TFBS_inv
2L	18603947	2L_18603947_SNP [dm3] 2L_18603947_SNP [dm6]	A	G	2.260e^-4	0.782	SYNONYMOUS_CODING CG10413
2L	2436245	2L_2436245_SNP [dm3] 2L_2436245_SNP [dm6]	G	A	2.261e^-4	0.782	INTRON dpp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18260478	2R_18260478_SNP [dm3] 2R_22372973_SNP [dm6]	C	T	2.262e^-4	0.782	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	2.265e^-4	0.782	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18267693	X_18267693_SNP [dm3] X_18373660_SNP [dm6]	C	T	2.272e^-4	0.782	NON_SYNONYMOUS_CODING CrebB INTRON CrebB
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	2.273e^-4	0.782	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9165054	2R_9165054_SNP [dm3] 2R_13277549_SNP [dm6]	G	A	2.273e^-4	0.782	NON_SYNONYMOUS_CODING Dh31-R
3R	26916453	3R_26916453_SNP [dm3] 3R_31090731_SNP [dm6]	T	A	2.280e^-4	0.782	UTR_3_PRIME CG11317
3R	26916454	3R_26916454_SNP [dm3] 3R_31090732_SNP [dm6]	T	A	2.280e^-4	0.782	UTR_3_PRIME CG11317
3R	26916456	3R_26916456_DEL [dm3] 3R_31090734_DEL [dm6]	TTG	T	2.280e^-4	0.782	UTR_3_PRIME CG11317
3R	26916461	3R_26916461_SNP [dm3] 3R_31090739_SNP [dm6]	A	T	2.280e^-4	0.782	UTR_3_PRIME CG11317
3R	26916463	3R_26916463_SNP [dm3] 3R_31090741_SNP [dm6]	A	G	2.280e^-4	0.782	UTR_3_PRIME CG11317
3R	1019924	3R_1019924_INS [dm3] 3R_5194202_INS [dm6]	A	AGT	2.283e^-4	0.782	DOWNSTREAM snRNA:U4atac:82E INTRON cno
2R	17163370	2R_17163370_SNP [dm3] 2R_21275865_SNP [dm6]	T	G	2.284e^-4	0.782	INTRON Rgk3
2R	8425406	2R_8425406_SNP [dm3] 2R_12537901_SNP [dm6]	C	T	2.286e^-4	0.782	INTRON fra
3L	8801712	3L_8801712_SNP [dm3] 3L_8808612_SNP [dm6]	G	T	2.292e^-4	0.782	SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
X	16065065	X_16065065_DEL [dm3] X_16171032_DEL [dm6]	AACTGTATCTGTGCGCA...	A	2.295e^-4	0.782	INTERGENIC
2L	3879599	2L_3879599_SNP [dm3] 2L_3879599_SNP [dm6]	A	C	2.298e^-4	0.782	INTRON capu
3L	11401537	3L_11401537_SNP [dm3] 3L_11408437_SNP [dm6]	A	G	2.305e^-4	0.782	INTERGENIC
3R	23259539	3R_23259539_SNP [dm3] 3R_27433817_SNP [dm6]	G	A	2.329e^-4	0.782	INTRON side
2L	15565758	2L_15565758_SNP [dm3] 2L_15565758_SNP [dm6]	C	G	2.332e^-4	0.782	INTRON kek3
2L	3901786	2L_3901786_SNP [dm3] 2L_3901786_SNP [dm6]	G	A	2.336e^-4	0.782	INTRON capu
3L	5957186	3L_5957186_SNP [dm3] 3L_5964086_SNP [dm6]	T	A	2.337e^-4	0.782	INTERGENIC
2L	12870905	2L_12870905_SNP [dm3] 2L_12870905_SNP [dm6]	T	A	2.344e^-4	0.782	INTERGENIC
3L	8287377	3L_8287377_SNP [dm3] 3L_8294277_SNP [dm6]	A	C	2.344e^-4	0.782	INTRON CG7201
2R	14183526	2R_14183526_SNP [dm3] 2R_18296021_SNP [dm6]	C	T	2.346e^-4	0.782	DOWNSTREAM CG18536 INTRON sbb & 1 other
3L	2730303	3L_2730303_SNP [dm3] 3L_2730303_SNP [dm6]	G	A	2.347e^-4	0.782	INTRON Mrtf
3L	758736	3L_758736_SNP [dm3] 3L_758736_SNP [dm6]	T	A	2.347e^-4	0.782	INTERGENIC
3R	21990345	3R_21990345_SNP [dm3] 3R_26164623_SNP [dm6]	C	G	2.363e^-4	0.782	INTERGENIC
2R	5901891	2R_5901891_SNP [dm3] 2R_10014386_SNP [dm6]	T	A	2.367e^-4	0.782	INTRON Pka-R2
2R	9682406	2R_9682406_SNP [dm3] 2R_13794901_SNP [dm6]	G	T	2.368e^-4	0.782	START_GAINED Cpr50Cb UTR_5_PRIME Cpr50Cb
2R	19469637	2R_19469637_SNP [dm3] 2R_23582114_SNP [dm6]	G	T	2.379e^-4	0.782	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	15734545	2L_15734545_SNP [dm3] 2L_15734545_SNP [dm6]	T	A	2.382e^-4	0.782	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	4912425	2L_4912425_SNP [dm3] 2L_4912425_SNP [dm6]	T	A	2.388e^-4	0.782	INTRON hoe1
2L	10368721	2L_10368721_SNP [dm3] 2L_10368721_SNP [dm6]	G	A	2.391e^-4	0.782	SYNONYMOUS_CODING rho-5 DOWNSTREAM CG5056	TF binding site mE1_TFBS_cad
X	20397018	X_20397018_SNP [dm3] X_20525991_SNP [dm6]	A	G	2.391e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	20563216	3R_20563216_SNP [dm3] 3R_24737494_SNP [dm6]	T	C	2.393e^-4	0.782	INTRON tok
3L	15565997	3L_15565997_SNP [dm3] 3L_15572897_SNP [dm6]	A	T	2.393e^-4	0.782	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12066614	3L_12066614_SNP [dm3] 3L_12073514_SNP [dm6]	C	T	2.394e^-4	0.782	INTRON Sema-5c
3R	7717137	3R_7717137_INS [dm3] 3R_11891415_INS [dm6]	A	AA	2.395e^-4	0.782	SPLICE_SITE_REGION CG31368 DOWNSTREAM CG6971 INTRON CG31368	TF binding site mE1_TFBS_sens
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	2.396e^-4	0.782	INTRON CG7781
3R	21990271	3R_21990271_SNP [dm3] 3R_26164549_SNP [dm6]	T	C	2.398e^-4	0.782	INTERGENIC
3R	16588480	3R_16588480_SNP [dm3] 3R_20762758_SNP [dm6]	C	T	2.403e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	21990297	3R_21990297_SNP [dm3] 3R_26164575_SNP [dm6]	A	T	2.406e^-4	0.782	INTERGENIC
3R	10763537	3R_10763537_SNP [dm3] 3R_14937815_SNP [dm6]	A	T	2.410e^-4	0.782	INTERGENIC
2R	7677152	2R_7677152_SNP [dm3] 2R_11789647_SNP [dm6]	T	A	2.410e^-4	0.782	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8604840	2L_8604840_SNP [dm3] 2L_8604840_SNP [dm6]	G	C	2.411e^-4	0.782	INTRON Sema-1a
2L	12282321	2L_12282321_SNP [dm3] 2L_12282321_SNP [dm6]	T	A	2.412e^-4	0.782	INTRON aret
2L	12601196	2L_12601196_SNP [dm3] 2L_12601196_SNP [dm6]	C	A	2.412e^-4	0.782	INTRON nub	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2993316	X_2993316_SNP [dm3] X_3099283_SNP [dm6]	G	T	2.418e^-4	0.782	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	749727	2L_749727_SNP [dm3] 2L_749727_SNP [dm6]	C	A	2.428e^-4	0.782	UPSTREAM GABA-B-R3 INTERGENIC
3R	11600454	3R_11600454_SNP [dm3] 3R_15774732_SNP [dm6]	T	A	2.434e^-4	0.782	SPLICE_SITE_REGION CG4525 UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525
2L	14693008	2L_14693008_SNP [dm3] 2L_14693008_SNP [dm6]	T	A	2.437e^-4	0.782	INTERGENIC
2R	14708199	2R_14708199_SNP [dm3] 2R_18820694_SNP [dm6]	C	T	2.448e^-4	0.782	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	2.452e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4912312	2L_4912312_SNP [dm3] 2L_4912312_SNP [dm6]	G	A	2.457e^-4	0.782	INTRON hoe1
X	7351358	X_7351358_SNP [dm3] X_7457325_SNP [dm6]	T	G	2.458e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17437228	3L_17437228_SNP [dm3] 3L_17444128_SNP [dm6]	C	T	2.459e^-4	0.782	INTRON CG18265	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27859229	3R_27859229_SNP [dm3] 3R_32033507_SNP [dm6]	A	C	2.460e^-4	0.782	INTERGENIC
X	6691642	X_6691642_SNP [dm3] X_6797609_SNP [dm6]	C	A	2.473e^-4	0.782	INTRON C3G
X	11098629	X_11098629_SNP [dm3] X_11204596_SNP [dm6]	C	A	2.475e^-4	0.782	INTERGENIC
3R	821025	3R_821025_SNP [dm3] 3R_4995303_SNP [dm6]	T	C	2.480e^-4	0.782	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	7853788	X_7853788_SNP [dm3] X_7959755_SNP [dm6]	G	A	2.482e^-4	0.782	UPSTREAM sws INTRON sws EXON CR45620	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12925117	2L_12925117_SNP [dm3] 2L_12925117_SNP [dm6]	C	A	2.485e^-4	0.782	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA UPSTREAM ACXE
3L	8843512	3L_8843512_SNP [dm3] 3L_8850412_SNP [dm6]	A	T	2.485e^-4	0.782	INTRON dally	TF binding site BDTNP1_TFBS_da
3L	5993560	3L_5993560_INS [dm3] 3L_6000460_INS [dm6]	T	CG	2.496e^-4	0.782	INTRON PVRAP
2R	5763531	2R_5763531_SNP [dm3] 2R_9876026_SNP [dm6]	C	T	2.496e^-4	0.782	SYNONYMOUS_CODING CG12744 UPSTREAM cbx DOWNSTREAM Sec24AB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5429431	2L_5429431_SNP [dm3] 2L_5429431_SNP [dm6]	A	T	2.509e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4911991	2L_4911991_SNP [dm3] 2L_4911991_SNP [dm6]	G	T	2.510e^-4	0.782	INTRON hoe1	TF binding site mE1_TFBS_chinmo
3L	7942749	3L_7942749_SNP [dm3] 3L_7949649_SNP [dm6]	T	C	2.514e^-4	0.782	INTRON exex
2L	10184428	2L_10184428_SNP [dm3] 2L_10184428_SNP [dm6]	A	G	2.514e^-4	0.782	INTRON Sur
3R	15997846	3R_15997846_SNP [dm3] 3R_20172124_SNP [dm6]	C	T	2.514e^-4	0.782	INTRON CG5023
3L	6944889	3L_6944889_SNP [dm3] 3L_6951789_SNP [dm6]	A	C	2.523e^-4	0.782	DOWNSTREAM CG10077 INTRON CG10077
X	15531751	X_15531751_SNP [dm3] X_15637718_SNP [dm6]	C	T	2.524e^-4	0.782	DOWNSTREAM CR44423 INTERGENIC
3L	1356055	3L_1356055_SNP [dm3] 3L_1356055_SNP [dm6]	C	A	2.525e^-4	0.782	INTRON Ptp61F	TF binding site mE1_TFBS_inv
2L	3932057	2L_3932057_SNP [dm3] 2L_3932057_SNP [dm6]	A	T	2.525e^-4	0.782	INTRON fred
3L	4091153	3L_4091153_SNP [dm3] 3L_4091153_SNP [dm6]	C	G	2.539e^-4	0.782	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
2L	5968217	2L_5968217_DEL [dm3] 2L_5968217_DEL [dm6]	GG	G	2.539e^-4	0.782	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	22528100	3L_22528100_SNP [dm3] 3L_22535000_SNP [dm6]	T	C	2.540e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8286262	3L_8286262_SNP [dm3] 3L_8293162_SNP [dm6]	A	G	2.544e^-4	0.782	INTRON CG7201
3R	16830770	3R_16830770_SNP [dm3] 3R_21005048_SNP [dm6]	G	A	2.544e^-4	0.782	DOWNSTREAM CG10827 INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15569363	2L_15569363_SNP [dm3] 2L_15569363_SNP [dm6]	A	G	2.544e^-4	0.782	INTRON kek3
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	2.546e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2621809	3L_2621809_SNP [dm3] 3L_2621809_SNP [dm6]	T	A	2.562e^-4	0.782	INTRON Pxn
2L	4916065	2L_4916065_SNP [dm3] 2L_4916065_SNP [dm6]	G	T	2.563e^-4	0.782	UPSTREAM hoe1 INTRON hoe1
3L	12381154	3L_12381154_DEL [dm3] 3L_12388054_DEL [dm6]	CTG	C	2.565e^-4	0.782	UPSTREAM Ncc69 INTRON Ncc69
3L	12381159	3L_12381159_DEL [dm3] 3L_12388059_DEL [dm6]	ACTTTCA	A	2.565e^-4	0.782	UPSTREAM Ncc69 INTRON Ncc69
X	15531943	X_15531943_INS [dm3] X_15637910_INS [dm6]	C	CTATATGCTATAC...	2.575e^-4	0.782	DOWNSTREAM CR44423 INTERGENIC
3R	12630642	3R_12630642_SNP [dm3] 3R_16804920_SNP [dm6]	T	C	2.578e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12013152	X_12013152_SNP [dm3] X_12119119_SNP [dm6]	A	G	2.582e^-4	0.782	INTRON Ten-a
2L	8036476	2L_8036476_SNP [dm3] 2L_8036476_SNP [dm6]	C	T	2.590e^-4	0.782	SYNONYMOUS_CODING Cka INTRON CG7367
3L	22558118	3L_22558118_SNP [dm3] 3L_22565018_SNP [dm6]	T	C	2.592e^-4	0.782	INTERGENIC
3L	7087136	3L_7087136_SNP [dm3] 3L_7094036_SNP [dm6]	T	G	2.596e^-4	0.782	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27838468	3R_27838468_SNP [dm3] 3R_32012746_SNP [dm6]	G	A	2.597e^-4	0.782	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27866874	3R_27866874_SNP [dm3] 3R_32041152_SNP [dm6]	G	A	2.597e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6660279	3L_6660279_SNP [dm3] 3L_6667179_SNP [dm6]	G	A	2.600e^-4	0.782	NON_SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
2R	5873286	2R_5873286_SNP [dm3] 2R_9985781_SNP [dm6]	C	T	2.607e^-4	0.782	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16499887	2R_16499887_SNP [dm3] 2R_20612382_SNP [dm6]	T	C	2.612e^-4	0.782	INTRON Hil
2R	8843635	2R_8843635_SNP [dm3] 2R_12956130_SNP [dm6]	A	G	2.618e^-4	0.782	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	7776140	3R_7776140_DEL [dm3] 3R_11950418_DEL [dm6]	TCCTT	T	2.621e^-4	0.782	SPLICE_SITE_REGION CG31211 INTRON CG31211	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	2.623e^-4	0.782	INTRON par-1
2R	18260884	2R_18260884_SNP [dm3] 2R_22373379_SNP [dm6]	T	C	2.625e^-4	0.782	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5510321	3L_5510321_INS [dm3] 3L_5517221_INS [dm6]	T	TT	2.625e^-4	0.782	INTRON Lkr
3R	27854582	3R_27854582_SNP [dm3] 3R_32028860_SNP [dm6]	G	A	2.642e^-4	0.782	INTERGENIC
3R	2799335	3R_2799335_SNP [dm3] 3R_6973613_SNP [dm6]	G	A	2.658e^-4	0.782	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6252785	2R_6252785_SNP [dm3] 2R_10365280_SNP [dm6]	C	T	2.666e^-4	0.782	UPSTREAM CG42732 INTRON CG42732
X	20611365	X_20611365_INS [dm3] X_20740338_INS [dm6]	C	CC	2.676e^-4	0.782	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	1009262	3R_1009262_SNP [dm3] 3R_5183540_SNP [dm6]	T	A	2.679e^-4	0.782	INTRON cno
2R	9084813	2R_9084813_SNP [dm3] 2R_13197308_SNP [dm6]	C	T	2.680e^-4	0.782	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19984794	3R_19984794_SNP [dm3] 3R_24159072_SNP [dm6]	T	C	2.682e^-4	0.782	INTRON Myo95E
3R	19615049	3R_19615049_SNP [dm3] 3R_23789327_SNP [dm6]	A	T	2.688e^-4	0.782	INTRON mbc
2L	6304373	2L_6304373_SNP [dm3] 2L_6304373_SNP [dm6]	C	A	2.691e^-4	0.782	INTRON Ddr
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	2.693e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13667234	X_13667234_SNP [dm3] X_13773201_SNP [dm6]	G	T	2.694e^-4	0.782	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6077599	2R_6077599_SNP [dm3] 2R_10190094_SNP [dm6]	C	T	2.696e^-4	0.782	INTRON KCNQ
3L	2174616	3L_2174616_SNP [dm3] 3L_2174616_SNP [dm6]	A	T	2.699e^-4	0.782	UPSTREAM CG15820 INTERGENIC
2L	14693455	2L_14693455_MNP [dm3] 2L_14693455_MNP [dm6]	TAC	ACG	2.701e^-4	0.782	INTERGENIC
3R	27872690	3R_27872690_SNP [dm3] 3R_32046968_SNP [dm6]	T	C	2.702e^-4	0.782	UTR_3_PRIME krz
2R	14768761	2R_14768761_SNP [dm3] 2R_18881256_SNP [dm6]	T	C	2.705e^-4	0.782	INTRON sano
3L	9214537	3L_9214537_SNP [dm3] 3L_9221437_SNP [dm6]	G	A	2.712e^-4	0.782	UPSTREAM CR45408 INTERGENIC
3R	3553491	3R_3553491_SNP [dm3] 3R_7727769_SNP [dm6]	C	G	2.712e^-4	0.782	INTERGENIC
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	2.717e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	2.717e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10767207	3R_10767207_SNP [dm3] 3R_14941485_SNP [dm6]	G	A	2.720e^-4	0.782	INTERGENIC
2R	17715919	2R_17715919_SNP [dm3] 2R_21828414_SNP [dm6]	C	T	2.724e^-4	0.782	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
2R	9682405	2R_9682405_SNP [dm3] 2R_13794900_SNP [dm6]	C	T	2.725e^-4	0.782	START_GAINED Cpr50Cb UTR_5_PRIME Cpr50Cb
3L	4493360	3L_4493360_SNP [dm3] 3L_4493360_SNP [dm6]	A	G	2.727e^-4	0.782	DOWNSTREAM CR44709 INTERGENIC
3L	3138325	3L_3138325_SNP [dm3] 3L_3138325_SNP [dm6]	T	C	2.730e^-4	0.782	INTRON CG11537
3L	3138331	3L_3138331_SNP [dm3] 3L_3138331_SNP [dm6]	G	A	2.730e^-4	0.782	INTRON CG11537
3L	8681424	3L_8681424_SNP [dm3] 3L_8688324_SNP [dm6]	A	G	2.733e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3994121	2L_3994121_SNP [dm3] 2L_3994121_SNP [dm6]	A	G	2.735e^-4	0.782	INTERGENIC
2R	8264831	2R_8264831_SNP [dm3] 2R_12377326_SNP [dm6]	G	A	2.735e^-4	0.782	UTR_3_PRIME Cpr49Aa
2R	14219958	2R_14219958_SNP [dm3] 2R_18332453_SNP [dm6]	C	A	2.740e^-4	0.782	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	16588183	3R_16588183_SNP [dm3] 3R_20762461_SNP [dm6]	A	G	2.742e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3867801	3L_3867801_SNP [dm3] 3L_3867801_SNP [dm6]	C	A	2.743e^-4	0.782	INTERGENIC
2R	9672702	2R_9672702_SNP [dm3] 2R_13785197_SNP [dm6]	T	C	2.747e^-4	0.782	DOWNSTREAM CR43810 INTRON Cpr50Ca
2R	13184610	2R_13184610_SNP [dm3] 2R_17297105_SNP [dm6]	A	C	2.760e^-4	0.782	INTRON mbl
2L	7171853	2L_7171853_SNP [dm3] 2L_7171853_SNP [dm6]	G	T	2.771e^-4	0.782	INTERGENIC
2R	5887635	2R_5887635_SNP [dm3] 2R_10000130_SNP [dm6]	G	T	2.782e^-4	0.782	INTRON Pka-R2
3L	12641361	3L_12641361_SNP [dm3] 3L_12648261_SNP [dm6]	A	T	2.782e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	7738768	3R_7738768_SNP [dm3] 3R_11913046_SNP [dm6]	C	G	2.784e^-4	0.782	INTRON Cad87A
3L	12381145	3L_12381145_SNP [dm3] 3L_12388045_SNP [dm6]	G	C	2.785e^-4	0.782	UPSTREAM Ncc69 INTRON Ncc69
3L	12381148	3L_12381148_SNP [dm3] 3L_12388048_SNP [dm6]	G	T	2.785e^-4	0.782	UPSTREAM Ncc69 INTRON Ncc69
X	11824324	X_11824324_DEL [dm3] X_11930291_DEL [dm6]	TGGTGAAACCAAGT...	A	2.789e^-4	0.782	DOWNSTREAM cac INTRON CG10362
2R	14143072	2R_14143072_SNP [dm3] 2R_18255567_SNP [dm6]	G	A	2.791e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4575484	3R_4575484_SNP [dm3] 3R_8749762_SNP [dm6]	C	T	2.804e^-4	0.782	UTR_3_PRIME CG34135 & 1 other INTRON CG8223
2L	3901505	2L_3901505_SNP [dm3] 2L_3901505_SNP [dm6]	T	G	2.807e^-4	0.782	INTRON capu
2R	10230897	2R_10230897_SNP [dm3] 2R_14343392_SNP [dm6]	T	A	2.808e^-4	0.782	INTRON Shroom
3R	15189050	3R_15189050_SNP [dm3] 3R_19363328_SNP [dm6]	C	A	2.809e^-4	0.782	INTERGENIC
3L	3556395	3L_3556395_SNP [dm3] 3L_3556395_SNP [dm6]	G	A	2.812e^-4	0.782	INTRON Eip63E
X	5579434	X_5579434_SNP [dm3] X_5685401_SNP [dm6]	C	A	2.823e^-4	0.782	UTR_3_PRIME CG3160 DOWNSTREAM CG42449
X	3753223	X_3753223_SNP [dm3] X_3859190_SNP [dm6]	G	C	2.825e^-4	0.782	EXON roX1
3R	7801260	3R_7801260_SNP [dm3] 3R_11975538_SNP [dm6]	G	A	2.835e^-4	0.782	NON_SYNONYMOUS_CODING CG10005 UPSTREAM Tango9 INTRON CG10005	TF binding site BDTNP1_TFBS_dl
2R	18260355	2R_18260355_INS [dm3] 2R_22372850_INS [dm6]	C	CTATTTTC	2.843e^-4	0.782	UTR_5_PRIME Liprin-gamma DOWNSTREAM CR44759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16588226	3R_16588226_SNP [dm3] 3R_20762504_SNP [dm6]	C	T	2.843e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	6691779	X_6691779_SNP [dm3] X_6797746_SNP [dm6]	A	C	2.849e^-4	0.782	INTRON C3G
2R	9686565	2R_9686565_SNP [dm3] 2R_13799060_SNP [dm6]	G	T	2.850e^-4	0.782	INTRON Cpr50Cb
2L	19084522	2L_19084522_SNP [dm3] 2L_19084522_SNP [dm6]	C	T	2.855e^-4	0.782	INTRON Lim3	TF binding site BDTNP1_TFBS_dl
3L	7094840	3L_7094840_SNP [dm3] 3L_7101740_SNP [dm6]	G	A	2.857e^-4	0.782	INTRON form3
3R	10999290	3R_10999290_SNP [dm3] 3R_15173568_SNP [dm6]	A	T	2.863e^-4	0.782	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3501150	2L_3501150_SNP [dm3] 2L_3501150_SNP [dm6]	G	C	2.865e^-4	0.782	UTR_3_PRIME tim INTRON tim
2L	8504615	2L_8504615_SNP [dm3] 2L_8504615_SNP [dm6]	C	T	2.883e^-4	0.782	INTRON Dh31
X	10568569	X_10568569_SNP [dm3] X_10674536_SNP [dm6]	G	C	2.886e^-4	0.782	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
2L	15434561	2L_15434561_SNP [dm3] 2L_15434561_SNP [dm6]	C	T	2.887e^-4	0.782	SYNONYMOUS_CODING CG4161	TF binding site mE1_TFBS_sens
2L	15434579	2L_15434579_SNP [dm3] 2L_15434579_SNP [dm6]	C	T	2.887e^-4	0.782	SYNONYMOUS_CODING CG4161	TF binding site mE1_TFBS_sens
3R	12729706	3R_12729706_SNP [dm3] 3R_16903984_SNP [dm6]	G	T	2.891e^-4	0.782	INTRON iab-8
2L	14188359	2L_14188359_SNP [dm3] 2L_14188359_SNP [dm6]	G	A	2.902e^-4	0.782	INTRON Dyrk2
2R	8910218	2R_8910218_DEL [dm3] 2R_13022713_DEL [dm6]	TT	T	2.916e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_sens
3R	7050908	3R_7050908_SNP [dm3] 3R_11225186_SNP [dm6]	A	G	2.922e^-4	0.782	UPSTREAM scpr-C DOWNSTREAM snoRNA:Me28S-G2017 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	8155332	3L_8155332_SNP [dm3] 3L_8162232_SNP [dm6]	C	T	2.923e^-4	0.782	INTRON CG13675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12282252	2L_12282252_SNP [dm3] 2L_12282252_SNP [dm6]	A	C	2.925e^-4	0.782	INTRON aret
2L	1853086	2L_1853086_MNP [dm3] 2L_1853086_MNP [dm6]	TCC	CGT	2.928e^-4	0.782	INTRON wry
3L	3138332	3L_3138332_SNP [dm3] 3L_3138332_SNP [dm6]	T	A	2.931e^-4	0.782	INTRON CG11537
3L	8880121	3L_8880121_SNP [dm3] 3L_8887021_SNP [dm6]	A	G	2.934e^-4	0.782	INTRON dally
2L	12282369	2L_12282369_SNP [dm3] 2L_12282369_SNP [dm6]	A	G	2.935e^-4	0.782	INTRON aret
2L	9388853	2L_9388853_SNP [dm3] 2L_9388853_SNP [dm6]	A	C	2.937e^-4	0.782	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12282411	2L_12282411_SNP [dm3] 2L_12282411_SNP [dm6]	C	T	2.940e^-4	0.782	INTRON aret
2L	4806341	2L_4806341_SNP [dm3] 2L_4806341_SNP [dm6]	C	A	2.948e^-4	0.782	INTERGENIC
3R	27839340	3R_27839340_SNP [dm3] 3R_32013618_SNP [dm6]	T	C	2.950e^-4	0.782	DOWNSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	17437024	3L_17437024_SNP [dm3] 3L_17443924_SNP [dm6]	A	G	2.950e^-4	0.782	INTRON CG18265	TF binding site BDTNP1_TFBS_twi
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	2.952e^-4	0.782	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4930121	2L_4930121_SNP [dm3] 2L_4930121_SNP [dm6]	A	T	2.960e^-4	0.782	INTRON hoe1
2L	8524608	2L_8524608_SNP [dm3] 2L_8524608_SNP [dm6]	C	T	2.964e^-4	0.782	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad
2L	8539845	2L_8539845_SNP [dm3] 2L_8539845_SNP [dm6]	A	C	2.964e^-4	0.782	INTRON CG17834
3R	27799542	3R_27799542_SNP [dm3] 3R_31973820_SNP [dm6]	G	A	2.971e^-4	0.782	INTRON heph
3R	10763771	3R_10763771_SNP [dm3] 3R_14938049_SNP [dm6]	C	T	2.973e^-4	0.782	INTERGENIC
2R	6846480	2R_6846480_SNP [dm3] 2R_10958975_SNP [dm6]	C	T	2.990e^-4	0.782	INTERGENIC
2L	12366750	2L_12366750_SNP [dm3] 2L_12366750_SNP [dm6]	A	G	2.990e^-4	0.782	INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	20014624	3R_20014624_SNP [dm3] 3R_24188902_SNP [dm6]	C	T	2.990e^-4	0.782	UPSTREAM CG5515 DOWNSTREAM jnj INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3L	3892477	3L_3892477_SNP [dm3] 3L_3892477_SNP [dm6]	C	T	2.992e^-4	0.782	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
3L	11053314	3L_11053314_SNP [dm3] 3L_11060214_SNP [dm6]	G	C	2.998e^-4	0.782	NON_SYNONYMOUS_CODING CG6321 DOWNSTREAM CG7888
3L	12381139	3L_12381139_SNP [dm3] 3L_12388039_SNP [dm6]	A	C	2.999e^-4	0.782	UPSTREAM Ncc69 INTRON Ncc69
3L	12381141	3L_12381141_DEL [dm3] 3L_12388041_DEL [dm6]	AAT	C	2.999e^-4	0.782	UPSTREAM Ncc69 INTRON Ncc69
2L	11149377	2L_11149377_SNP [dm3] 2L_11149377_SNP [dm6]	C	G	3.007e^-4	0.782	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7058231	3L_7058231_SNP [dm3] 3L_7065131_SNP [dm6]	C	T	3.009e^-4	0.782	INTRON CG8641
2L	13172574	2L_13172574_SNP [dm3] 2L_13172574_SNP [dm6]	A	G	3.012e^-4	0.782	INTRON Sfmbt	TF binding site mE1_TFBS_cad
3L	14112958	3L_14112958_SNP [dm3] 3L_14119858_SNP [dm6]	A	T	3.014e^-4	0.782	INTRON Sox21b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13022926	2L_13022926_SNP [dm3] 2L_13022926_SNP [dm6]	A	T	3.044e^-4	0.782	UTR_3_PRIME CG9932
2R	15870314	2R_15870314_SNP [dm3] 2R_19982809_SNP [dm6]	A	T	3.063e^-4	0.782	INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	778227	3L_778227_SNP [dm3] 3L_778227_SNP [dm6]	G	T	3.063e^-4	0.782	INTERGENIC
2L	21945896	2L_21945896_SNP [dm3] 2L_21945896_SNP [dm6]	T	A	3.074e^-4	0.782	INTERGENIC
2L	15991144	2L_15991144_SNP [dm3] 2L_15991144_SNP [dm6]	A	C	3.075e^-4	0.782	INTERGENIC
3L	8034940	3L_8034940_SNP [dm3] 3L_8041840_SNP [dm6]	A	G	3.076e^-4	0.782	INTRON nmo
3L	7081418	3L_7081418_SNP [dm3] 3L_7088318_SNP [dm6]	G	T	3.076e^-4	0.782	SYNONYMOUS_CODING Cpr65Eb
2L	1578529	2L_1578529_SNP [dm3] 2L_1578529_SNP [dm6]	A	G	3.078e^-4	0.782	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3751345	3R_3751345_SNP [dm3] 3R_7925623_SNP [dm6]	A	C	3.080e^-4	0.782	INTRON dsx
2L	3901478	2L_3901478_SNP [dm3] 2L_3901478_SNP [dm6]	T	C	3.082e^-4	0.782	INTRON capu
2L	13182961	2L_13182961_SNP [dm3] 2L_13182961_SNP [dm6]	T	A	3.087e^-4	0.782	SYNONYMOUS_CODING CG5287 UPSTREAM CG5458 & 1 other DOWNSTREAM CG16974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12138945	X_12138945_SNP [dm3] X_12244912_SNP [dm6]	T	A	3.092e^-4	0.782	INTRON Ten-a
2L	12366723	2L_12366723_SNP [dm3] 2L_12366723_SNP [dm6]	C	G	3.094e^-4	0.782	INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	5213284	X_5213284_SNP [dm3] X_5319251_SNP [dm6]	A	T	3.101e^-4	0.782	NON_SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
3R	10184289	3R_10184289_SNP [dm3] 3R_14358567_SNP [dm6]	T	A	3.102e^-4	0.782	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8467841	2R_8467841_SNP [dm3] 2R_12580336_SNP [dm6]	G	A	3.102e^-4	0.782	NON_SYNONYMOUS_CODING Sin3A
2R	3532145	2R_3532145_SNP [dm3] 2R_7644640_SNP [dm6]	T	A	3.111e^-4	0.782	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	13184324	2R_13184324_SNP [dm3] 2R_17296819_SNP [dm6]	A	G	3.116e^-4	0.782	INTRON mbl
3R	8111307	3R_8111307_SNP [dm3] 3R_12285585_SNP [dm6]	T	A	3.122e^-4	0.782	INTRON svp
2L	579986	2L_579986_SNP [dm3] 2L_579986_SNP [dm6]	C	T	3.130e^-4	0.782	DOWNSTREAM Pph13 INTERGENIC
3R	7776051	3R_7776051_SNP [dm3] 3R_11950329_SNP [dm6]	G	C	3.131e^-4	0.782	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8078248	2L_8078248_SNP [dm3] 2L_8078248_SNP [dm6]	G	C	3.135e^-4	0.782	SYNONYMOUS_CODING Mcr
2L	8078224	2L_8078224_SNP [dm3] 2L_8078224_SNP [dm6]	T	C	3.138e^-4	0.782	SYNONYMOUS_CODING Mcr
3L	5510037	3L_5510037_SNP [dm3] 3L_5516937_SNP [dm6]	C	T	3.141e^-4	0.782	INTRON Lkr
3R	24824660	3R_24824660_SNP [dm3] 3R_28998938_SNP [dm6]	G	C	3.142e^-4	0.782	INTRON wat
2L	2501171	2L_2501171_SNP [dm3] 2L_2501171_SNP [dm6]	T	A	3.142e^-4	0.782	INTERGENIC
3R	14506415	3R_14506415_SNP [dm3] 3R_18680693_SNP [dm6]	A	G	3.149e^-4	0.782	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3R	27838469	3R_27838469_SNP [dm3] 3R_32012747_SNP [dm6]	G	T	3.151e^-4	0.782	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	3.157e^-4	0.782	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7853745	X_7853745_SNP [dm3] X_7959712_SNP [dm6]	T	G	3.158e^-4	0.782	UPSTREAM sws INTRON sws EXON CR45620	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8531505	2L_8531505_SNP [dm3] 2L_8531505_SNP [dm6]	A	T	3.160e^-4	0.782	INTRON CG17834
2R	6074143	2R_6074143_SNP [dm3] 2R_10186638_SNP [dm6]	C	T	3.165e^-4	0.782	INTRON KCNQ
3R	12672094	3R_12672094_SNP [dm3] 3R_16846372_SNP [dm6]	T	A	3.167e^-4	0.782	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9381344	3R_9381344_SNP [dm3] 3R_13555622_SNP [dm6]	C	A	3.168e^-4	0.782	INTERGENIC
3L	7091881	3L_7091881_INS [dm3] 3L_7098781_INS [dm6]	A	ACAAA	3.170e^-4	0.782	INTRON form3
3L	760112	3L_760112_SNP [dm3] 3L_760112_SNP [dm6]	C	T	3.176e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	3867314	2L_3867314_SNP [dm3] 2L_3867314_SNP [dm6]	T	C	3.185e^-4	0.782	UTR_3_PRIME CG3964 UPSTREAM Cep97	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16347143	3L_16347143_SNP [dm3] 3L_16354043_SNP [dm6]	C	G	3.190e^-4	0.782	NON_SYNONYMOUS_CODING Pdh DOWNSTREAM CG4933 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14265711	2R_14265711_SNP [dm3] 2R_18378206_SNP [dm6]	C	G	3.190e^-4	0.782	DOWNSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1575643	2L_1575643_SNP [dm3] 2L_1575643_SNP [dm6]	C	A	3.191e^-4	0.782	INTRON haf
2L	13172495	2L_13172495_SNP [dm3] 2L_13172495_SNP [dm6]	G	A	3.195e^-4	0.782	SYNONYMOUS_CODING Sfmbt	TF binding site mE1_TFBS_cad
X	5264579	X_5264579_SNP [dm3] X_5370546_SNP [dm6]	A	T	3.199e^-4	0.782	INTRON SK
2R	16993629	2R_16993629_SNP [dm3] 2R_21106124_SNP [dm6]	T	A	3.211e^-4	0.782	INTRON ktub
X	3006621	X_3006621_SNP [dm3] X_3112588_SNP [dm6]	T	A	3.225e^-4	0.782	INTRON kirre
3R	4566724	3R_4566724_SNP [dm3] 3R_8741002_SNP [dm6]	G	A	3.238e^-4	0.782	INTRON CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14914032	2L_14914032_SNP [dm3] 2L_14914032_SNP [dm6]	C	G	3.241e^-4	0.782	INTRON CG42313
3L	12641401	3L_12641401_SNP [dm3] 3L_12648301_SNP [dm6]	A	T	3.244e^-4	0.782	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	2501026	2L_2501026_SNP [dm3] 2L_2501026_SNP [dm6]	C	T	3.246e^-4	0.782	INTERGENIC
3R	15997885	3R_15997885_DEL [dm3] 3R_20172163_DEL [dm6]	CC	C	3.246e^-4	0.782	INTRON CG5023
2L	9316308	2L_9316308_SNP [dm3] 2L_9316308_SNP [dm6]	T	C	3.257e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	12088289	2L_12088289_SNP [dm3] 2L_12088289_SNP [dm6]	G	T	3.260e^-4	0.782	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16063432	2R_16063432_SNP [dm3] 2R_20175927_SNP [dm6]	T	A	3.266e^-4	0.782	INTERGENIC
2L	10899633	2L_10899633_SNP [dm3] 2L_10899633_SNP [dm6]	C	T	3.271e^-4	0.782	DOWNSTREAM CG14070 INTERGENIC
2L	4915939	2L_4915939_SNP [dm3] 2L_4915939_SNP [dm6]	T	C	3.272e^-4	0.782	UPSTREAM hoe1 INTRON hoe1
3L	5985816	3L_5985816_SNP [dm3] 3L_5992716_SNP [dm6]	G	A	3.273e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	1344223	2L_1344223_SNP [dm3] 2L_1344223_SNP [dm6]	G	A	3.273e^-4	0.782	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	7272159	3L_7272159_SNP [dm3] 3L_7279059_SNP [dm6]	T	G	3.273e^-4	0.782	INTRON unc-13-4A
2L	3900732	2L_3900732_SNP [dm3] 2L_3900732_SNP [dm6]	T	C	3.274e^-4	0.782	INTRON capu
3R	9649487	3R_9649487_SNP [dm3] 3R_13823765_SNP [dm6]	C	A	3.281e^-4	0.782	INTERGENIC
3R	16330101	3R_16330101_SNP [dm3] 3R_20504379_SNP [dm6]	T	A	3.286e^-4	0.782	UPSTREAM MtnB & 1 other INTERGENIC
2R	10951809	2R_10951809_SNP [dm3] 2R_15064304_SNP [dm6]	G	T	3.286e^-4	0.782	INTERGENIC
2R	10951812	2R_10951812_SNP [dm3] 2R_15064307_SNP [dm6]	T	A	3.286e^-4	0.782	INTERGENIC
3R	24893549	3R_24893549_DEL [dm3] 3R_29067827_DEL [dm6]	TTAT	A	3.287e^-4	0.782	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13173193	2L_13173193_SNP [dm3] 2L_13173193_SNP [dm6]	C	T	3.290e^-4	0.782	SYNONYMOUS_CODING Sfmbt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15892467	2R_15892467_SNP [dm3] 2R_20004962_SNP [dm6]	A	T	3.293e^-4	0.782	NON_SYNONYMOUS_CODING CG16898
2R	15892469	2R_15892469_INS [dm3] 2R_20004964_INS [dm6]	TGG	ACATT	3.293e^-4	0.782
2L	6244360	2L_6244360_SNP [dm3] 2L_6244360_SNP [dm6]	T	A	3.296e^-4	0.782	INTERGENIC
3R	17398407	3R_17398407_SNP [dm3] 3R_21572685_SNP [dm6]	G	A	3.300e^-4	0.782	UTR_3_PRIME InR
3L	7081406	3L_7081406_SNP [dm3] 3L_7088306_SNP [dm6]	C	T	3.302e^-4	0.782	SYNONYMOUS_CODING Cpr65Eb
3L	7087231	3L_7087231_SNP [dm3] 3L_7094131_SNP [dm6]	G	T	3.303e^-4	0.782	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24824142	3R_24824142_SNP [dm3] 3R_28998420_SNP [dm6]	A	G	3.308e^-4	0.782	INTRON wat
X	9650352	X_9650352_INS [dm3] X_9756319_INS [dm6]	T	TT	3.311e^-4	0.782	UTR_3_PRIME Sp1 DOWNSTREAM Sp1	TF binding site BDTNP1_TFBS_slp1
2L	12429663	2L_12429663_SNP [dm3] 2L_12429663_SNP [dm6]	G	A	3.321e^-4	0.782	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19539804	2R_19539804_SNP [dm3] 2R_23652281_SNP [dm6]	T	A	3.331e^-4	0.782	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	15365766	2R_15365766_SNP [dm3] 2R_19478261_SNP [dm6]	G	C	3.332e^-4	0.782	INTRON par-1
X	13351810	X_13351810_SNP [dm3] X_13457777_SNP [dm6]	G	A	3.332e^-4	0.782	UPSTREAM CG34324 INTRON Neto
3L	11397563	3L_11397563_SNP [dm3] 3L_11404463_SNP [dm6]	G	T	3.336e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14365835	2R_14365835_SNP [dm3] 2R_18478330_SNP [dm6]	C	A	3.342e^-4	0.782	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16063430	2R_16063430_SNP [dm3] 2R_20175925_SNP [dm6]	G	T	3.347e^-4	0.782	INTERGENIC
3L	8811417	3L_8811417_SNP [dm3] 3L_8818317_SNP [dm6]	G	T	3.354e^-4	0.782	INTERGENIC
2R	16063363	2R_16063363_SNP [dm3] 2R_20175858_SNP [dm6]	C	T	3.356e^-4	0.782	INTERGENIC
3L	6451397	3L_6451397_SNP [dm3] 3L_6458297_SNP [dm6]	C	T	3.358e^-4	0.782	INTRON CG42747	TF binding site mE1_TFBS_sens
2R	6987986	2R_6987986_SNP [dm3] 2R_11100481_SNP [dm6]	T	A	3.360e^-4	0.782	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12282018	2L_12282018_SNP [dm3] 2L_12282018_SNP [dm6]	A	G	3.361e^-4	0.782	INTRON aret
3R	1016009	3R_1016009_SNP [dm3] 3R_5190287_SNP [dm6]	G	A	3.366e^-4	0.782	INTRON cno
X	2889531	X_2889531_SNP [dm3] X_2995498_SNP [dm6]	A	G	3.368e^-4	0.782	INTRON kirre
3R	15997843	3R_15997843_SNP [dm3] 3R_20172121_SNP [dm6]	C	T	3.368e^-4	0.782	INTRON CG5023
X	12261090	X_12261090_SNP [dm3] X_12367057_SNP [dm6]	C	G	3.369e^-4	0.782	INTERGENIC
3L	5512266	3L_5512266_SNP [dm3] 3L_5519166_SNP [dm6]	A	G	3.374e^-4	0.782	INTRON Lkr
3L	10355958	3L_10355958_SNP [dm3] 3L_10362858_SNP [dm6]	T	C	3.376e^-4	0.782	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26388745	3R_26388745_SNP [dm3] 3R_30563023_SNP [dm6]	A	T	3.376e^-4	0.782	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19124219	2L_19124219_SNP [dm3] 2L_19124219_SNP [dm6]	G	A	3.389e^-4	0.782	SYNONYMOUS_CODING l_2_37Cb UPSTREAM l_2_37Cc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	27855940	3R_27855940_SNP [dm3] 3R_32030218_SNP [dm6]	A	C	3.390e^-4	0.782	INTERGENIC
2R	3359061	2R_3359061_SNP [dm3] 2R_7471556_SNP [dm6]	T	A	3.409e^-4	0.782	INTRON Aldh-III
2R	8844071	2R_8844071_SNP [dm3] 2R_12956566_SNP [dm6]	A	G	3.410e^-4	0.782	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3223519	X_3223519_SNP [dm3] X_3329486_SNP [dm6]	A	G	3.411e^-4	0.782	UTR_5_PRIME dnc INTRON CR44886 & 1 other
2L	7507277	2L_7507277_SNP [dm3] 2L_7507277_SNP [dm6]	G	C	3.413e^-4	0.782	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	1582426	3L_1582426_SNP [dm3] 3L_1582426_SNP [dm6]	C	T	3.418e^-4	0.782	INTRON CG13917	TF binding site mE1_TFBS_HSA
2L	8884285	2L_8884285_SNP [dm3] 2L_8884285_SNP [dm6]	T	A	3.419e^-4	0.782	INTERGENIC
2L	718079	2L_718079_SNP [dm3] 2L_718079_SNP [dm6]	T	G	3.428e^-4	0.782	INTERGENIC
3R	14275490	3R_14275490_SNP [dm3] 3R_18449768_SNP [dm6]	C	T	3.429e^-4	0.782	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15458494	2L_15458494_SNP [dm3] 2L_15458494_SNP [dm6]	G	T	3.432e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14693425	2L_14693425_SNP [dm3] 2L_14693425_SNP [dm6]	G	T	3.441e^-4	0.782	INTERGENIC
3R	16866648	3R_16866648_SNP [dm3] 3R_21040926_SNP [dm6]	C	T	3.441e^-4	0.782	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB
3L	1260896	3L_1260896_SNP [dm3] 3L_1260896_SNP [dm6]	T	A	3.442e^-4	0.782	INTRON CG9134
2L	9318576	2L_9318576_SNP [dm3] 2L_9318576_SNP [dm6]	A	G	3.442e^-4	0.782	INTERGENIC
3L	5560458	3L_5560458_SNP [dm3] 3L_5567358_SNP [dm6]	T	C	3.448e^-4	0.782	UTR_3_PRIME Msr-110 DOWNSTREAM bc10 & 1 other
2R	5901187	2R_5901187_SNP [dm3] 2R_10013682_SNP [dm6]	G	A	3.448e^-4	0.782	INTRON Pka-R2
3R	16588430	3R_16588430_SNP [dm3] 3R_20762708_SNP [dm6]	T	A	3.450e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	4638042	3R_4638042_SNP [dm3] 3R_8812320_SNP [dm6]	C	A	3.453e^-4	0.782	INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11352197	X_11352197_SNP [dm3] X_11458164_SNP [dm6]	A	C	3.463e^-4	0.782	INTRON HP5
2R	8844361	2R_8844361_SNP [dm3] 2R_12956856_SNP [dm6]	G	T	3.464e^-4	0.782	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
3L	579770	3L_579770_SNP [dm3] 3L_579770_SNP [dm6]	C	T	3.466e^-4	0.782	UTR_3_PRIME hipk
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	3.468e^-4	0.782	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
3R	10762786	3R_10762786_SNP [dm3] 3R_14937064_SNP [dm6]	C	G	3.477e^-4	0.782	INTERGENIC
2L	3502521	2L_3502521_SNP [dm3] 2L_3502521_SNP [dm6]	G	T	3.489e^-4	0.782	SYNONYMOUS_CODING tim
2L	3874657	2L_3874657_SNP [dm3] 2L_3874657_SNP [dm6]	G	T	3.490e^-4	0.782	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
3L	12641259	3L_12641259_INS [dm3] 3L_12648159_INS [dm6]	T	TGTT	3.493e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	4860923	X_4860923_INS [dm3] X_4966890_INS [dm6]	A	AA	3.496e^-4	0.782	INTRON CR44833	regulatory region REDfly_CRMs
X	21901916	X_21901916_SNP [dm3] X_22500080_SNP [dm6]	A	T	3.496e^-4	0.782	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16588401	3R_16588401_SNP [dm3] 3R_20762679_SNP [dm6]	G	C	3.498e^-4	0.782	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	7025922	3L_7025922_SNP [dm3] 3L_7032822_SNP [dm6]	A	G	3.500e^-4	0.782	INTRON Mp
2R	12474355	2R_12474355_SNP [dm3] 2R_16586850_SNP [dm6]	G	A	3.501e^-4	0.782	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1016008	3R_1016008_SNP [dm3] 3R_5190286_SNP [dm6]	T	A	3.504e^-4	0.782	INTRON cno
3R	26388664	3R_26388664_SNP [dm3] 3R_30562942_SNP [dm6]	C	T	3.514e^-4	0.782	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18917134	3R_18917134_SNP [dm3] 3R_23091412_SNP [dm6]	C	T	3.517e^-4	0.782	UPSTREAM CG6726 & 1 other INTRON CG13830	TF binding site BDTNP1_TFBS_dl
2L	14696389	2L_14696389_SNP [dm3] 2L_14696389_SNP [dm6]	G	A	3.517e^-4	0.782	INTERGENIC
2L	15458161	2L_15458161_SNP [dm3] 2L_15458161_SNP [dm6]	A	T	3.520e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1237450	3L_1237450_SNP [dm3] 3L_1237450_SNP [dm6]	G	A	3.522e^-4	0.782	SYNONYMOUS_CODING CG9192 INTRON CG9194
3R	16588069	3R_16588069_SNP [dm3] 3R_20762347_SNP [dm6]	C	T	3.527e^-4	0.782	UTR_5_PRIME CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4927105	2L_4927105_SNP [dm3] 2L_4927105_SNP [dm6]	C	T	3.528e^-4	0.782	INTRON hoe1
3L	5985743	3L_5985743_SNP [dm3] 3L_5992643_SNP [dm6]	T	C	3.528e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	22935700	3R_22935700_SNP [dm3] 3R_27109978_SNP [dm6]	C	T	3.531e^-4	0.782	INTRON gb EXON CR45209
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	3.537e^-4	0.782	INTERGENIC
X	12261431	X_12261431_DEL [dm3] X_12367398_DEL [dm6]	CGGTTCGGTTCAGTTT...	C	3.541e^-4	0.782	INTERGENIC
3L	11873494	3L_11873494_SNP [dm3] 3L_11880394_SNP [dm6]	G	T	3.544e^-4	0.782	NON_SYNONYMOUS_CODING CG14128 UPSTREAM CCDC151 INTRON CG44837
2L	12921032	2L_12921032_SNP [dm3] 2L_12921032_SNP [dm6]	G	A	3.545e^-4	0.782	UPSTREAM ACXA DOWNSTREAM ACXB INTERGENIC
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	3.555e^-4	0.782	INTERGENIC
2R	9641082	2R_9641082_SNP [dm3] 2R_13753577_SNP [dm6]	C	G	3.558e^-4	0.782	UPSTREAM CG6280 INTERGENIC
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	3.560e^-4	0.782	INTRON CG1516	TF binding site mE1_TFBS_cad
2R	6985590	2R_6985590_SNP [dm3] 2R_11098085_SNP [dm6]	A	T	3.561e^-4	0.782	INTRON luna
3R	27842038	3R_27842038_SNP [dm3] 3R_32016316_SNP [dm6]	G	T	3.564e^-4	0.782	UPSTREAM heph EXON CR45557	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10774063	3R_10774063_SNP [dm3] 3R_14948341_SNP [dm6]	C	G	3.569e^-4	0.782	INTERGENIC
X	5860553	X_5860553_SNP [dm3] X_5966520_SNP [dm6]	C	G	3.571e^-4	0.782	UTR_5_PRIME Grip	TF binding site BDTNP1_TFBS_dl
2L	8539826	2L_8539826_SNP [dm3] 2L_8539826_SNP [dm6]	T	G	3.574e^-4	0.782	INTRON CG17834
2R	14185313	2R_14185313_SNP [dm3] 2R_18297808_SNP [dm6]	A	G	3.577e^-4	0.782	UTR_5_PRIME CG18539 UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
3L	7631247	3L_7631247_SNP [dm3] 3L_7638147_SNP [dm6]	C	T	3.595e^-4	0.782	INTRON CG33275
2R	5760716	2R_5760716_SNP [dm3] 2R_9873211_SNP [dm6]	C	T	3.599e^-4	0.782	INTRON cbx & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
3L	5959115	3L_5959115_SNP [dm3] 3L_5966015_SNP [dm6]	C	A	3.602e^-4	0.782	INTERGENIC
3L	6385232	3L_6385232_SNP [dm3] 3L_6392132_SNP [dm6]	G	A	3.604e^-4	0.782	INTERGENIC
3R	10378844	3R_10378844_SNP [dm3] 3R_14553122_SNP [dm6]	C	A	3.617e^-4	0.782	INTRON Pde6
2L	2599808	2L_2599808_DEL [dm3] 2L_2599808_DEL [dm6]	TT	T	3.623e^-4	0.782	EXON CR44790
3L	11121782	3L_11121782_SNP [dm3] 3L_11128682_SNP [dm6]	C	A	3.628e^-4	0.782	UPSTREAM CG42575 INTRON CG42575
2L	9827465	2L_9827465_SNP [dm3] 2L_9827465_SNP [dm6]	A	C	3.640e^-4	0.782	INTRON nAChRalpha6
3R	27866429	3R_27866429_SNP [dm3] 3R_32040707_SNP [dm6]	C	A	3.642e^-4	0.782	DOWNSTREAM CG2053 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16949408	2R_16949408_SNP [dm3] 2R_21061903_SNP [dm6]	C	A	3.648e^-4	0.782	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
2R	17371228	2R_17371228_SNP [dm3] 2R_21483723_SNP [dm6]	G	A	3.648e^-4	0.782	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18070413	3L_18070413_SNP [dm3] 3L_18077313_SNP [dm6]	A	G	3.656e^-4	0.782	UPSTREAM CR45392 INTERGENIC
2R	18262285	2R_18262285_SNP [dm3] 2R_22374780_SNP [dm6]	C	A	3.665e^-4	0.782	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13436198	2L_13436198_SNP [dm3] 2L_13436198_SNP [dm6]	C	T	3.674e^-4	0.782	SYNONYMOUS_CODING Tehao INTRON CG42784
2R	13079912	2R_13079912_SNP [dm3] 2R_17192407_SNP [dm6]	A	G	3.678e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4143536	3L_4143536_SNP [dm3] 3L_4143536_SNP [dm6]	G	A	3.685e^-4	0.782	SYNONYMOUS_CODING CG32260 INTRON CG32260
3R	24824152	3R_24824152_SNP [dm3] 3R_28998430_SNP [dm6]	G	C	3.690e^-4	0.782	INTRON wat
3R	27855732	3R_27855732_SNP [dm3] 3R_32030010_SNP [dm6]	A	G	3.694e^-4	0.782	INTERGENIC
2L	3029528	2L_3029528_DEL [dm3] 2L_3029528_DEL [dm6]	ATCA	A	3.695e^-4	0.782	UPSTREAM CG3605 DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	15997969	3R_15997969_SNP [dm3] 3R_20172247_SNP [dm6]	T	A	3.708e^-4	0.782	INTRON CG5023
3R	10373067	3R_10373067_SNP [dm3] 3R_14547345_SNP [dm6]	C	T	3.709e^-4	0.782	INTRON Pde6
2L	1853084	2L_1853084_SNP [dm3] 2L_1853084_SNP [dm6]	A	G	3.710e^-4	0.782	INTRON wry
2R	12849849	2R_12849849_DEL [dm3] 2R_16962344_DEL [dm6]	ATTGAGCTTATA...	A	3.723e^-4	0.782	INTERGENIC
2R	14144024	2R_14144024_SNP [dm3] 2R_18256519_SNP [dm6]	G	A	3.723e^-4	0.782	UPSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17659781	2R_17659781_SNP [dm3] 2R_21772276_SNP [dm6]	A	C	3.728e^-4	0.782	INTERGENIC
3L	11053679	3L_11053679_SNP [dm3] 3L_11060579_SNP [dm6]	T	C	3.729e^-4	0.782	NON_SYNONYMOUS_CODING CG6321 UPSTREAM Blos2 DOWNSTREAM CG7888
2L	8504960	2L_8504960_SNP [dm3] 2L_8504960_SNP [dm6]	G	A	3.731e^-4	0.782	INTRON Dh31
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	3.740e^-4	0.782	INTRON CG30007
2R	6426636	2R_6426636_SNP [dm3] 2R_10539131_SNP [dm6]	A	G	3.741e^-4	0.782	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	613050	2L_613050_SNP [dm3] 2L_613050_SNP [dm6]	A	G	3.758e^-4	0.782	INTERGENIC
2R	16407839	2R_16407839_SNP [dm3] 2R_20520334_SNP [dm6]	G	A	3.758e^-4	0.782	INTERGENIC
3L	12641358	3L_12641358_SNP [dm3] 3L_12648258_SNP [dm6]	A	T	3.759e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	15138860	2L_15138860_SNP [dm3] 2L_15138860_SNP [dm6]	T	C	3.770e^-4	0.782	INTERGENIC
X	12666180	X_12666180_SNP [dm3] X_12772147_SNP [dm6]	C	T	3.771e^-4	0.782	UTR_3_PRIME CG3812 & 1 other
X	12823504	X_12823504_SNP [dm3] X_12929471_SNP [dm6]	C	G	3.775e^-4	0.782	INTRON fne	TF binding site BDTNP1_TFBS_dl
3R	12729705	3R_12729705_SNP [dm3] 3R_16903983_SNP [dm6]	T	A	3.775e^-4	0.782	INTRON iab-8
3L	9169261	3L_9169261_SNP [dm3] 3L_9176161_SNP [dm6]	G	C	3.777e^-4	0.782	INTRON Rdl
2L	1722003	2L_1722003_SNP [dm3] 2L_1722003_SNP [dm6]	C	T	3.784e^-4	0.782	INTRON Rim2
X	5204852	X_5204852_DEL [dm3] X_5310819_DEL [dm6]	TGAGT	T	3.797e^-4	0.782	UTR_3_PRIME TrxT DOWNSTREAM snf
2R	14365824	2R_14365824_SNP [dm3] 2R_18478319_SNP [dm6]	C	T	3.798e^-4	0.782	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27853220	3R_27853220_DEL [dm3] 3R_32027498_DEL [dm6]	CATTGGAATAC...	C	3.802e^-4	0.782	DOWNSTREAM CR45557 INTERGENIC
2L	18603977	2L_18603977_SNP [dm3] 2L_18603977_SNP [dm6]	C	A	3.817e^-4	0.782	SYNONYMOUS_CODING CG10413
3L	11034416	3L_11034416_SNP [dm3] 3L_11041316_SNP [dm6]	C	T	3.822e^-4	0.782	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11103935	3L_11103935_SNP [dm3] 3L_11110835_SNP [dm6]	T	C	3.830e^-4	0.782	INTRON CG7638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20428016	2L_20428016_DEL [dm3] 2L_20428016_DEL [dm6]	CT	C	3.830e^-4	0.782	INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1510073	2L_1510073_SNP [dm3] 2L_1510073_SNP [dm6]	C	G	3.836e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14693420	2L_14693420_SNP [dm3] 2L_14693420_SNP [dm6]	A	T	3.840e^-4	0.782	INTERGENIC
3L	8692060	3L_8692060_SNP [dm3] 3L_8698960_SNP [dm6]	C	G	3.840e^-4	0.782	INTERGENIC
2R	8423549	2R_8423549_SNP [dm3] 2R_12536044_SNP [dm6]	C	T	3.842e^-4	0.782	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1356719	2L_1356719_SNP [dm3] 2L_1356719_SNP [dm6]	A	C	3.849e^-4	0.782	UPSTREAM CG5565 INTERGENIC
2R	13079894	2R_13079894_SNP [dm3] 2R_17192389_SNP [dm6]	G	A	3.850e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1198495	3L_1198495_DEL [dm3] 3L_1198495_DEL [dm6]	TC	T	3.852e^-4	0.782	INTRON Aplip1
3L	2380964	3L_2380964_SNP [dm3] 3L_2380964_SNP [dm6]	C	T	3.862e^-4	0.782	INTRON CG45186
2L	12921510	2L_12921510_SNP [dm3] 2L_12921510_SNP [dm6]	A	T	3.873e^-4	0.782	NON_SYNONYMOUS_CODING ACXA DOWNSTREAM ACXB
3L	5993527	3L_5993527_SNP [dm3] 3L_6000427_SNP [dm6]	T	A	3.878e^-4	0.782	INTRON PVRAP
3R	7599511	3R_7599511_SNP [dm3] 3R_11773789_SNP [dm6]	C	T	3.887e^-4	0.782	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1020735	3R_1020735_SNP [dm3] 3R_5195013_SNP [dm6]	G	A	3.890e^-4	0.782	INTRON cno EXON snRNA:U4atac:82E
3L	4938688	3L_4938688_SNP [dm3] 3L_4938688_SNP [dm6]	T	A	3.895e^-4	0.782	UTR_3_PRIME Con
2L	2750479	2L_2750479_SNP [dm3] 2L_2750479_SNP [dm6]	C	T	3.907e^-4	0.782	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18158179	3L_18158179_SNP [dm3] 3L_18165079_SNP [dm6]	T	C	3.913e^-4	0.782	INTERGENIC
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	3.928e^-4	0.782	INTRON CG31191
3L	11199073	3L_11199073_SNP [dm3] 3L_11205973_SNP [dm6]	A	G	3.929e^-4	0.782	UTR_5_PRIME Plod DOWNSTREAM Ube3a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	917276	2L_917276_SNP [dm3] 2L_917276_SNP [dm6]	C	T	3.944e^-4	0.782	SYNONYMOUS_CODING GluRIIC
2L	917285	2L_917285_SNP [dm3] 2L_917285_SNP [dm6]	G	A	3.944e^-4	0.782	SYNONYMOUS_CODING GluRIIC
2L	19207516	2L_19207516_SNP [dm3] 2L_19207516_SNP [dm6]	A	C	3.946e^-4	0.782	INTRON drl
3R	8112340	3R_8112340_SNP [dm3] 3R_12286618_SNP [dm6]	G	A	3.951e^-4	0.782	INTRON svp
3R	3301551	3R_3301551_SNP [dm3] 3R_7475829_SNP [dm6]	G	A	3.955e^-4	0.782	UPSTREAM snRNA:7SK DOWNSTREAM tRNA:V3b:84Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
3R	21321365	3R_21321365_SNP [dm3] 3R_25495643_SNP [dm6]	C	T	3.959e^-4	0.782	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC	transposable element FlyBase
X	10921445	X_10921445_SNP [dm3] X_11027412_SNP [dm6]	G	C	3.966e^-4	0.782	INTRON CG42339
3L	18020832	3L_18020832_SNP [dm3] 3L_18027732_SNP [dm6]	T	A	3.966e^-4	0.782	INTRON Eip75B
3L	12641265	3L_12641265_SNP [dm3] 3L_12648165_SNP [dm6]	G	A	3.967e^-4	0.782	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12779942	2R_12779942_SNP [dm3] 2R_16892437_SNP [dm6]	A	T	3.967e^-4	0.782	INTRON CG8910	TF binding site mE1_TFBS_inv
3R	27838223	3R_27838223_SNP [dm3] 3R_32012501_SNP [dm6]	C	T	3.975e^-4	0.782	UPSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27845994	3R_27845994_SNP [dm3] 3R_32020272_SNP [dm6]	G	A	3.975e^-4	0.782	EXON CR45557
3R	27851038	3R_27851038_SNP [dm3] 3R_32025316_SNP [dm6]	A	G	3.975e^-4	0.782	EXON CR45557
3R	27856469	3R_27856469_SNP [dm3] 3R_32030747_SNP [dm6]	A	T	3.975e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27861083	3R_27861083_SNP [dm3] 3R_32035361_SNP [dm6]	G	A	3.975e^-4	0.782	INTERGENIC
3R	27876403	3R_27876403_SNP [dm3] 3R_32050681_SNP [dm6]	T	A	3.975e^-4	0.782	INTRON krz
2R	11220968	2R_11220968_SNP [dm3] 2R_15333463_SNP [dm6]	G	A	3.976e^-4	0.782	INTRON Hr51
3L	12770194	3L_12770194_SNP [dm3] 3L_12777094_SNP [dm6]	G	C	3.979e^-4	0.782	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3R	27842711	3R_27842711_SNP [dm3] 3R_32016989_SNP [dm6]	C	G	3.985e^-4	0.782	EXON CR45557
3L	11053527	3L_11053527_SNP [dm3] 3L_11060427_SNP [dm6]	G	A	3.988e^-4	0.782	SYNONYMOUS_CODING CG6321 DOWNSTREAM CG7888
3R	20380666	3R_20380666_SNP [dm3] 3R_24554944_SNP [dm6]	T	C	3.988e^-4	0.782	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7863411	3L_7863411_SNP [dm3] 3L_7870311_SNP [dm6]	T	A	3.994e^-4	0.782	INTRON CG32365	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	17376934	2L_17376934_SNP [dm3] 2L_17376934_SNP [dm6]	A	C	3.997e^-4	0.782	INTRON Lrch
2R	20022879	2R_20022879_SNP [dm3] 2R_24135356_SNP [dm6]	G	A	4.000e^-4	0.782	SYNONYMOUS_CODING CG4065 UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8
3L	7091206	3L_7091206_SNP [dm3] 3L_7098106_SNP [dm6]	C	T	4.003e^-4	0.782	INTRON form3
3R	24121146	3R_24121146_SNP [dm3] 3R_28295424_SNP [dm6]	T	G	4.005e^-4	0.782	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC
X	15438303	X_15438303_SNP [dm3] X_15544270_SNP [dm6]	G	A	4.008e^-4	0.782	INTRON Ac13E
3R	17908167	3R_17908167_SNP [dm3] 3R_22082445_SNP [dm6]	G	C	4.012e^-4	0.782	INTRON CG13408
3R	27752120	3R_27752120_INS [dm3] 3R_31926398_INS [dm6]	A	AG	4.024e^-4	0.782	INTRON heph
3R	27752123	3R_27752123_SNP [dm3] 3R_31926401_SNP [dm6]	T	A	4.024e^-4	0.782	INTRON heph
3R	27752124	3R_27752124_DEL [dm3] 3R_31926402_DEL [dm6]	GT	G	4.024e^-4	0.782	INTRON heph
3R	27752126	3R_27752126_DEL [dm3] 3R_31926404_DEL [dm6]	GCACC	G	4.024e^-4	0.782	INTRON heph
2L	15052123	2L_15052123_SNP [dm3] 2L_15052123_SNP [dm6]	A	C	4.025e^-4	0.782	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15997878	3R_15997878_SNP [dm3] 3R_20172156_SNP [dm6]	A	G	4.026e^-4	0.782	INTRON CG5023
3R	17908165	3R_17908165_INS [dm3] 3R_22082443_INS [dm6]	A	AAAAGGTT	4.035e^-4	0.782	INTRON CG13408
2L	1196053	2L_1196053_SNP [dm3] 2L_1196053_SNP [dm6]	C	T	4.037e^-4	0.782	INTRON CG5001
2L	12767436	2L_12767436_SNP [dm3] 2L_12767436_SNP [dm6]	G	A	4.042e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	22316643	3L_22316643_SNP [dm3] 3L_22323543_SNP [dm6]	T	A	4.048e^-4	0.782	INTRON Ten-m
3L	8879918	3L_8879918_SNP [dm3] 3L_8886818_SNP [dm6]	C	G	4.051e^-4	0.782	SYNONYMOUS_CODING dally
2L	2712384	2L_2712384_SNP [dm3] 2L_2712384_SNP [dm6]	G	C	4.062e^-4	0.782	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2L	8539830	2L_8539830_SNP [dm3] 2L_8539830_SNP [dm6]	C	T	4.068e^-4	0.782	INTRON CG17834
2L	1200721	2L_1200721_SNP [dm3] 2L_1200721_SNP [dm6]	G	A	4.070e^-4	0.782	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2L	19084500	2L_19084500_SNP [dm3] 2L_19084500_SNP [dm6]	T	G	4.071e^-4	0.782	INTRON Lim3	TF binding site BDTNP1_TFBS_dl
3R	27754106	3R_27754106_SNP [dm3] 3R_31928384_SNP [dm6]	A	T	4.082e^-4	0.782	INTRON heph	TF binding site mE1_TFBS_h
3L	10852459	3L_10852459_SNP [dm3] 3L_10859359_SNP [dm6]	C	T	4.084e^-4	0.782	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_sbb
3L	18203235	3L_18203235_SNP [dm3] 3L_18210135_SNP [dm6]	T	G	4.097e^-4	0.782	INTERGENIC
X	7059940	X_7059940_SNP [dm3] X_7165907_SNP [dm6]	A	T	4.103e^-4	0.782	DOWNSTREAM CR44357 INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	6687540	X_6687540_INS [dm3] X_6793507_INS [dm6]	A	AT	4.104e^-4	0.782	INTRON C3G
2L	5378959	2L_5378959_SNP [dm3] 2L_5378959_SNP [dm6]	G	T	4.106e^-4	0.782	DOWNSTREAM CR42850 INTERGENIC
3R	14275388	3R_14275388_SNP [dm3] 3R_18449666_SNP [dm6]	T	A	4.114e^-4	0.782	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6063611	2R_6063611_SNP [dm3] 2R_10176106_SNP [dm6]	G	T	4.114e^-4	0.782	INTRON KCNQ
2L	4925620	2L_4925620_SNP [dm3] 2L_4925620_SNP [dm6]	C	T	4.122e^-4	0.782	INTRON hoe1
X	13315925	X_13315925_DEL [dm3] X_13421892_DEL [dm6]	AA	A	4.127e^-4	0.782	DOWNSTREAM Set2 INTERGENIC
2L	8520815	2L_8520815_SNP [dm3] 2L_8520815_SNP [dm6]	T	C	4.129e^-4	0.782	NON_SYNONYMOUS_CODING CG13091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	4.133e^-4	0.782	INTRON 4EHP
2L	19124243	2L_19124243_SNP [dm3] 2L_19124243_SNP [dm6]	A	G	4.135e^-4	0.782	SYNONYMOUS_CODING l_2_37Cb UPSTREAM l_2_37Cc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12681976	2L_12681976_SNP [dm3] 2L_12681976_SNP [dm6]	A	G	4.157e^-4	0.782	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	12257033	2L_12257033_SNP [dm3] 2L_12257033_SNP [dm6]	A	G	4.158e^-4	0.782	INTRON aret
3R	27859627	3R_27859627_SNP [dm3] 3R_32033905_SNP [dm6]	A	G	4.161e^-4	0.782	INTERGENIC
2R	13533166	2R_13533166_SNP [dm3] 2R_17645661_SNP [dm6]	C	G	4.165e^-4	0.782	INTERGENIC
3R	23807165	3R_23807165_SNP [dm3] 3R_27981443_SNP [dm6]	A	T	4.165e^-4	0.782	INTRON betaTub97EF
3R	27859697	3R_27859697_SNP [dm3] 3R_32033975_SNP [dm6]	C	A	4.173e^-4	0.782	INTERGENIC
3L	7092000	3L_7092000_SNP [dm3] 3L_7098900_SNP [dm6]	T	C	4.177e^-4	0.782	INTRON form3
3R	15812426	3R_15812426_SNP [dm3] 3R_19986704_SNP [dm6]	T	C	4.177e^-4	0.782	INTRON Hs6st
2L	6077217	2L_6077217_SNP [dm3] 2L_6077217_SNP [dm6]	A	C	4.184e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	4.189e^-4	0.782	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	1240283	2L_1240283_SNP [dm3] 2L_1240283_SNP [dm6]	C	T	4.189e^-4	0.782	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
3R	27879611	3R_27879611_SNP [dm3] 3R_32053889_SNP [dm6]	T	A	4.190e^-4	0.782	NON_SYNONYMOUS_CODING mod
3L	7082699	3L_7082699_SNP [dm3] 3L_7089599_SNP [dm6]	G	T	4.205e^-4	0.782	UPSTREAM Cpr65Eb INTERGENIC
X	2646354	X_2646354_SNP [dm3] X_2752321_SNP [dm6]	G	A	4.208e^-4	0.782	UPSTREAM CR43494 INTRON kirre
2L	18603953	2L_18603953_SNP [dm3] 2L_18603953_SNP [dm6]	G	C	4.212e^-4	0.782	SYNONYMOUS_CODING CG10413
2L	15967927	2L_15967927_SNP [dm3] 2L_15967927_SNP [dm6]	C	A	4.214e^-4	0.782	INTERGENIC
3L	6521019	3L_6521019_SNP [dm3] 3L_6527919_SNP [dm6]	C	A	4.219e^-4	0.782	INTRON sfl
3L	3319301	3L_3319301_DEL [dm3] 3L_3319301_DEL [dm6]	TA	T	4.219e^-4	0.782	UPSTREAM CG12016 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Ubx
X	6902425	X_6902425_SNP [dm3] X_7008392_SNP [dm6]	T	A	4.220e^-4	0.782	DOWNSTREAM cm INTRON Inx7	TF binding site BDTNP1_TFBS_dl
2L	17432158	2L_17432158_SNP [dm3] 2L_17432158_SNP [dm6]	T	C	4.223e^-4	0.782	INTRON Dif
3R	10763720	3R_10763720_SNP [dm3] 3R_14937998_SNP [dm6]	A	T	4.229e^-4	0.782	INTERGENIC
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	4.233e^-4	0.782	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8516994	2R_8516994_SNP [dm3] 2R_12629489_SNP [dm6]	A	T	4.237e^-4	0.782	DOWNSTREAM CG17760 INTRON muskelin
3R	27752119	3R_27752119_SNP [dm3] 3R_31926397_SNP [dm6]	C	G	4.238e^-4	0.782	INTRON heph

By genomic position
Variant impact
Gene name

Cuticul_7_C23_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results