DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.189e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.8626	0.0155

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3503 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8678198	X_8678198_SNP [dm3] X_8784165_SNP [dm6]	T	C	7.200e^-8	0.076	INTRON Lim1
X	8678159	X_8678159_SNP [dm3] X_8784126_SNP [dm6]	C	G	8.059e^-8	0.076	INTRON Lim1
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	5.086e^-7	0.273	INTERGENIC
X	8678233	X_8678233_SNP [dm3] X_8784200_SNP [dm6]	G	A	5.822e^-7	0.273	INTRON Lim1
2L	11919422	2L_11919422_SNP [dm3] 2L_11919422_SNP [dm6]	C	T	1.002e^-6	0.3	INTRON Pde1c
2L	7175145	2L_7175145_SNP [dm3] 2L_7175145_SNP [dm6]	G	T	1.142e^-6	0.3	UPSTREAM CR44610 INTERGENIC
X	6360789	X_6360789_SNP [dm3] X_6466756_SNP [dm6]	A	G	1.602e^-6	0.3	UTR_3_PRIME CG42340 INTRON CG42340	TF binding site BDTNP1_TFBS_sna
2L	15100047	2L_15100047_SNP [dm3] 2L_15100047_SNP [dm6]	T	C	1.732e^-6	0.3	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5138967	2R_5138967_SNP [dm3] 2R_9251462_SNP [dm6]	T	G	2.048e^-6	0.3	UPSTREAM CG30343 DOWNSTREAM Pkn INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	9885006	2L_9885006_SNP [dm3] 2L_9885006_SNP [dm6]	A	T	2.255e^-6	0.3	INTRON nAChRalpha6
X	16734161	X_16734161_SNP [dm3] X_16840128_SNP [dm6]	G	A	2.255e^-6	0.3	UTR_3_PRIME RSG7 DOWNSTREAM RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	2.378e^-6	0.3	INTRON 4EHP
2L	11181321	2L_11181321_SNP [dm3] 2L_11181321_SNP [dm6]	G	A	2.484e^-6	0.3	DOWNSTREAM CG4788 INTRON Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15100035	2L_15100035_DEL [dm3] 2L_15100035_DEL [dm6]	CC	T	3.097e^-6	0.3	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10340804	3R_10340804_SNP [dm3] 3R_14515082_SNP [dm6]	T	C	3.161e^-6	0.3	UTR_3_PRIME Pde6
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	3.177e^-6	0.3	INTERGENIC
3L	22599489	3L_22599489_SNP [dm3] 3L_22606389_SNP [dm6]	G	A	3.284e^-6	0.3	UTR_5_PRIME CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21838226	X_21838226_SNP [dm3] X_22436391_SNP [dm6]	T	A	3.653e^-6	0.3	INTERGENIC
2L	19680788	2L_19680788_SNP [dm3] 2L_19680788_SNP [dm6]	G	A	3.723e^-6	0.3	INTRON Lar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10351617	3R_10351617_SNP [dm3] 3R_14525895_SNP [dm6]	T	C	3.781e^-6	0.3	INTRON Pde6
3L	1167035	3L_1167035_SNP [dm3] 3L_1167035_SNP [dm6]	A	C	4.085e^-6	0.3	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	8678179	X_8678179_SNP [dm3] X_8784146_SNP [dm6]	C	T	4.265e^-6	0.3	INTRON Lim1
2R	2784101	2R_2784101_SNP [dm3] 2R_6896596_SNP [dm6]	T	C	4.478e^-6	0.3	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6063995	2R_6063995_SNP [dm3] 2R_10176490_SNP [dm6]	C	T	4.540e^-6	0.3	INTRON KCNQ
3R	6907511	3R_6907511_SNP [dm3] 3R_11081789_SNP [dm6]	A	T	5.174e^-6	0.3	INTERGENIC
3R	10339524	3R_10339524_SNP [dm3] 3R_14513802_SNP [dm6]	A	T	5.179e^-6	0.3	UPSTREAM CG8461 DOWNSTREAM Pde6 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10347648	3R_10347648_SNP [dm3] 3R_14521926_SNP [dm6]	A	G	5.355e^-6	0.3	SPLICE_SITE_REGION Cyp313a1 INTRON Pde6 & 1 other
2L	12059258	2L_12059258_SNP [dm3] 2L_12059258_SNP [dm6]	T	C	5.446e^-6	0.3	SYNONYMOUS_CODING Rab3-GAP
X	21845434	X_21845434_SNP [dm3] X_22443598_SNP [dm6]	G	T	5.470e^-6	0.3	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15100021	2L_15100021_SNP [dm3] 2L_15100021_SNP [dm6]	A	T	5.514e^-6	0.3	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14490770	2L_14490770_SNP [dm3] 2L_14490770_SNP [dm6]	G	A	5.545e^-6	0.3	UPSTREAM noc INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	19893962	3R_19893962_SNP [dm3] 3R_24068240_SNP [dm6]	G	A	5.732e^-6	0.3	INTRON 4EHP
3L	15230348	3L_15230348_SNP [dm3] 3L_15237248_SNP [dm6]	C	T	5.890e^-6	0.3	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19893967	3R_19893967_SNP [dm3] 3R_24068245_SNP [dm6]	C	T	5.999e^-6	0.3	INTRON 4EHP
3R	6904448	3R_6904448_SNP [dm3] 3R_11078726_SNP [dm6]	G	C	6.220e^-6	0.3	INTERGENIC
2R	11004087	2R_11004087_SNP [dm3] 2R_15116582_SNP [dm6]	C	T	6.274e^-6	0.3	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	22599913	3L_22599913_SNP [dm3] 3L_22606813_SNP [dm6]	C	G	6.418e^-6	0.3	SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11852673	X_11852673_SNP [dm3] X_11958640_SNP [dm6]	G	T	6.534e^-6	0.3	INTRON cac
X	21837768	X_21837768_SNP [dm3] X_22435933_SNP [dm6]	G	A	6.804e^-6	0.3	INTERGENIC	transposable element FlyBase
2L	17541695	2L_17541695_SNP [dm3] 2L_17541695_SNP [dm6]	C	T	6.835e^-6	0.3	UPSTREAM CR43304 INTERGENIC
3L	7158752	3L_7158752_SNP [dm3] 3L_7165652_SNP [dm6]	G	T	7.101e^-6	0.3	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17873896	2R_17873896_SNP [dm3] 2R_21986391_SNP [dm6]	T	C	7.255e^-6	0.3	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13449198	2R_13449198_SNP [dm3] 2R_17561693_SNP [dm6]	G	T	7.287e^-6	0.3	SPLICE_SITE_REGION Klp54D INTRON Klp54D
2R	9212867	2R_9212867_SNP [dm3] 2R_13325362_SNP [dm6]	G	A	7.513e^-6	0.3	INTERGENIC
2L	15100066	2L_15100066_SNP [dm3] 2L_15100066_SNP [dm6]	A	T	7.575e^-6	0.3	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	7.599e^-6	0.3	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	7.599e^-6	0.3	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21847208	X_21847208_SNP [dm3] X_22445372_SNP [dm6]	T	A	8.231e^-6	0.3	INTRON CG14621	TF binding site BDTNP1_TFBS_dl
3L	13937668	3L_13937668_SNP [dm3] 3L_13944568_SNP [dm6]	T	C	8.237e^-6	0.3	INTRON CG32137
X	10557283	X_10557283_DEL [dm3] X_10663250_DEL [dm6]	GCCG	G	8.256e^-6	0.3	INTRON X11Lbeta
2L	13341297	2L_13341297_SNP [dm3] 2L_13341297_SNP [dm6]	G	T	8.437e^-6	0.3	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15100083	2L_15100083_SNP [dm3] 2L_15100083_SNP [dm6]	A	C	8.488e^-6	0.3	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7525468	2R_7525468_SNP [dm3] 2R_11637963_SNP [dm6]	G	T	8.942e^-6	0.3	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11039245	3L_11039245_SNP [dm3] 3L_11046145_SNP [dm6]	C	A	9.051e^-6	0.3	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2033903	3L_2033903_SNP [dm3] 3L_2033903_SNP [dm6]	A	T	9.122e^-6	0.3	INTERGENIC
2L	17546478	2L_17546478_SNP [dm3] 2L_17546478_SNP [dm6]	T	G	9.346e^-6	0.3	UPSTREAM CR45697 INTERGENIC
3L	11526662	3L_11526662_SNP [dm3] 3L_11533562_SNP [dm6]	G	T	9.523e^-6	0.3	INTRON Mob2
3R	10349711	3R_10349711_SNP [dm3] 3R_14523989_SNP [dm6]	C	T	9.655e^-6	0.3	DOWNSTREAM Cyp313a1 INTRON Pde6
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	9.865e^-6	0.3	INTERGENIC
3R	10348715	3R_10348715_SNP [dm3] 3R_14522993_SNP [dm6]	G	A	1.007e^-5	0.3	UTR_3_PRIME Cyp313a1 INTRON Pde6
3R	6907766	3R_6907766_SNP [dm3] 3R_11082044_SNP [dm6]	C	G	1.011e^-5	0.3	INTERGENIC
2L	11200963	2L_11200963_SNP [dm3] 2L_11200963_SNP [dm6]	T	G	1.018e^-5	0.3	INTRON Ca-beta
3R	13667483	3R_13667483_SNP [dm3] 3R_17841761_SNP [dm6]	G	A	1.033e^-5	0.3	INTRON tinc
2L	8495897	2L_8495897_SNP [dm3] 2L_8495897_SNP [dm6]	T	C	1.039e^-5	0.3	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7937503	3L_7937503_SNP [dm3] 3L_7944403_SNP [dm6]	C	T	1.065e^-5	0.3	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11200921	2L_11200921_SNP [dm3] 2L_11200921_SNP [dm6]	T	A	1.088e^-5	0.3	INTRON Ca-beta
3R	10340425	3R_10340425_SNP [dm3] 3R_14514703_SNP [dm6]	G	T	1.106e^-5	0.3	UTR_3_PRIME Pde6
X	21846019	X_21846019_SNP [dm3] X_22444183_SNP [dm6]	T	G	1.124e^-5	0.3	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	13937661	3L_13937661_SNP [dm3] 3L_13944561_SNP [dm6]	C	T	1.148e^-5	0.3	INTRON CG32137
2L	17571289	2L_17571289_SNP [dm3] 2L_17571289_SNP [dm6]	C	G	1.151e^-5	0.3	INTERGENIC
2R	9409404	2R_9409404_SNP [dm3] 2R_13521899_SNP [dm6]	G	A	1.161e^-5	0.3	UTR_5_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	1.169e^-5	0.3	INTERGENIC
3L	4078907	3L_4078907_SNP [dm3] 3L_4078907_SNP [dm6]	T	A	1.184e^-5	0.3	INTRON Gad1
3R	4444518	3R_4444518_SNP [dm3] 3R_8618796_SNP [dm6]	A	G	1.185e^-5	0.3	INTRON 5-HT2B
X	21837782	X_21837782_SNP [dm3] X_22435947_SNP [dm6]	G	A	1.217e^-5	0.303	INTERGENIC	transposable element FlyBase
3R	18582453	3R_18582453_SNP [dm3] 3R_22756731_SNP [dm6]	C	T	1.227e^-5	0.303	INTRON Usp12-46 & 1 other
3L	8255981	3L_8255981_SNP [dm3] 3L_8262881_SNP [dm6]	T	C	1.270e^-5	0.303	INTRON Dscam4
2L	15761464	2L_15761464_SNP [dm3] 2L_15761464_SNP [dm6]	G	A	1.292e^-5	0.303	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	15100070	2L_15100070_DEL [dm3] 2L_15100070_DEL [dm6]	GTGGCCTTTCAG...	G	1.344e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10344076	3R_10344076_SNP [dm3] 3R_14518354_SNP [dm6]	A	C	1.351e^-5	0.303	DOWNSTREAM CG34273 INTRON Pde6
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.421e^-5	0.303	INTERGENIC
2R	7525393	2R_7525393_SNP [dm3] 2R_11637888_SNP [dm6]	A	T	1.441e^-5	0.303	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	7525429	2R_7525429_SNP [dm3] 2R_11637924_SNP [dm6]	C	T	1.441e^-5	0.303	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
X	21845912	X_21845912_SNP [dm3] X_22444076_SNP [dm6]	T	C	1.460e^-5	0.303	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	13426203	2R_13426203_SNP [dm3] 2R_17538698_SNP [dm6]	G	C	1.460e^-5	0.303	SYNONYMOUS_CODING eIF3-S9 UPSTREAM CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	16371936	2L_16371936_SNP [dm3] 2L_16371936_SNP [dm6]	A	C	1.467e^-5	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	18814836	2L_18814836_SNP [dm3] 2L_18814836_SNP [dm6]	G	C	1.469e^-5	0.303	DOWNSTREAM CG17325 & 1 other INTERGENIC
3R	20722614	3R_20722614_SNP [dm3] 3R_24896892_SNP [dm6]	T	G	1.477e^-5	0.303	DOWNSTREAM CG13643 INTRON CG11069
2L	15458192	2L_15458192_SNP [dm3] 2L_15458192_SNP [dm6]	C	T	1.492e^-5	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15458391	2L_15458391_DEL [dm3] 2L_15458391_DEL [dm6]	TTCACCCGCATT...	T	1.492e^-5	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	1.498e^-5	0.303	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6907097	3R_6907097_SNP [dm3] 3R_11081375_SNP [dm6]	T	C	1.519e^-5	0.303	INTERGENIC
3L	4864305	3L_4864305_SNP [dm3] 3L_4864305_SNP [dm6]	C	G	1.534e^-5	0.303	UTR_3_PRIME CG17150 INTRON CG17150
3R	10345321	3R_10345321_SNP [dm3] 3R_14519599_SNP [dm6]	G	T	1.539e^-5	0.303	INTRON Pde6
3R	25604258	3R_25604258_SNP [dm3] 3R_29778536_SNP [dm6]	C	T	1.547e^-5	0.303	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2L	13485378	2L_13485378_SNP [dm3] 2L_13485378_SNP [dm6]	T	A	1.570e^-5	0.303	INTRON CG42784
3R	10340607	3R_10340607_SNP [dm3] 3R_14514885_SNP [dm6]	C	T	1.583e^-5	0.303	UTR_3_PRIME Pde6
3L	22601213	3L_22601213_SNP [dm3] 3L_22608113_SNP [dm6]	C	T	1.594e^-5	0.303	DOWNSTREAM CG6914 INTRON CG14459
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	1.616e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2947900	2L_2947900_SNP [dm3] 2L_2947900_SNP [dm6]	G	A	1.617e^-5	0.303	NON_SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
2R	13786354	2R_13786354_SNP [dm3] 2R_17898849_SNP [dm6]	C	T	1.722e^-5	0.315	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	25604256	3R_25604256_SNP [dm3] 3R_29778534_SNP [dm6]	T	C	1.723e^-5	0.315	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2R	7475128	2R_7475128_SNP [dm3] 2R_11587623_SNP [dm6]	A	G	1.729e^-5	0.315	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3L	15230537	3L_15230537_SNP [dm3] 3L_15237437_SNP [dm6]	G	A	1.754e^-5	0.316	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	1.803e^-5	0.319	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9879514	2L_9879514_SNP [dm3] 2L_9879514_SNP [dm6]	A	G	1.803e^-5	0.319	INTRON nAChRalpha6
2L	11946890	2L_11946890_SNP [dm3] 2L_11946890_SNP [dm6]	C	T	1.856e^-5	0.325	UTR_3_PRIME Cry DOWNSTREAM Cry
2L	15464304	2L_15464304_SNP [dm3] 2L_15464304_SNP [dm6]	A	T	1.882e^-5	0.327	DOWNSTREAM CR44863 INTERGENIC
3R	10345195	3R_10345195_SNP [dm3] 3R_14519473_SNP [dm6]	T	C	1.914e^-5	0.328	INTRON Pde6
2R	3346327	2R_3346327_SNP [dm3] 2R_7458822_SNP [dm6]	A	G	1.922e^-5	0.328	START_GAINED Inos UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5734236	3L_5734236_SNP [dm3] 3L_5741136_SNP [dm6]	C	T	1.970e^-5	0.33	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10349656	3R_10349656_DEL [dm3] 3R_14523934_DEL [dm6]	AATGCTTTTAGGCAA...	A	1.980e^-5	0.33	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	2552704	2L_2552704_SNP [dm3] 2L_2552704_SNP [dm6]	C	T	1.993e^-5	0.33	SYNONYMOUS_CODING CG3515
2L	11945477	2L_11945477_SNP [dm3] 2L_11945477_SNP [dm6]	G	A	2.021e^-5	0.33	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5828078	2R_5828078_SNP [dm3] 2R_9940573_SNP [dm6]	T	C	2.025e^-5	0.33	INTRON Mef2	regulatory region REDfly_CRMs
2L	22197602	2L_22197602_SNP [dm3] 2L_22197602_SNP [dm6]	A	G	2.095e^-5	0.338	INTRON Ir40a
X	21848340	X_21848340_SNP [dm3] X_22446504_SNP [dm6]	A	T	2.136e^-5	0.338	DOWNSTREAM CG14615 INTRON CG14621
2R	18788137	2R_18788137_SNP [dm3] 2R_22900614_SNP [dm6]	C	G	2.152e^-5	0.338	INTRON nahoda
3R	17199371	3R_17199371_SNP [dm3] 3R_21373649_SNP [dm6]	A	G	2.159e^-5	0.338	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19893952	3R_19893952_SNP [dm3] 3R_24068230_SNP [dm6]	C	A	2.173e^-5	0.338	INTRON 4EHP
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	2.193e^-5	0.338	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2552689	2L_2552689_SNP [dm3] 2L_2552689_SNP [dm6]	T	C	2.210e^-5	0.338	SYNONYMOUS_CODING CG3515
3R	10354935	3R_10354935_SNP [dm3] 3R_14529213_SNP [dm6]	G	A	2.217e^-5	0.338	SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7525438	2R_7525438_SNP [dm3] 2R_11637933_SNP [dm6]	A	T	2.284e^-5	0.346	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	12523957	2R_12523957_SNP [dm3] 2R_16636452_SNP [dm6]	C	T	2.318e^-5	0.348	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7525491	2R_7525491_SNP [dm3] 2R_11637986_SNP [dm6]	A	C	2.363e^-5	0.348	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	18814842	2L_18814842_SNP [dm3] 2L_18814842_SNP [dm6]	C	T	2.366e^-5	0.348	DOWNSTREAM CG17325 & 1 other INTERGENIC
3R	8560309	3R_8560309_SNP [dm3] 3R_12734587_SNP [dm6]	C	T	2.391e^-5	0.348	INTERGENIC
3L	3616987	3L_3616987_SNP [dm3] 3L_3616987_SNP [dm6]	A	G	2.418e^-5	0.348	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15458230	2L_15458230_SNP [dm3] 2L_15458230_SNP [dm6]	G	C	2.512e^-5	0.348	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13485370	2L_13485370_SNP [dm3] 2L_13485370_SNP [dm6]	A	G	2.533e^-5	0.348	INTRON CG42784
3R	4444539	3R_4444539_SNP [dm3] 3R_8618817_SNP [dm6]	G	A	2.564e^-5	0.348	INTRON 5-HT2B
3L	7849665	3L_7849665_SNP [dm3] 3L_7856565_SNP [dm6]	T	C	2.573e^-5	0.348	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14062070	X_14062070_SNP [dm3] X_14168037_SNP [dm6]	A	G	2.596e^-5	0.348	INTERGENIC
3L	11526671	3L_11526671_SNP [dm3] 3L_11533571_SNP [dm6]	T	C	2.617e^-5	0.348	INTRON Mob2
2L	15761403	2L_15761403_SNP [dm3] 2L_15761403_SNP [dm6]	A	G	2.628e^-5	0.348	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17873904	2R_17873904_SNP [dm3] 2R_21986399_SNP [dm6]	C	T	2.636e^-5	0.348	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9212841	2R_9212841_SNP [dm3] 2R_13325336_SNP [dm6]	C	A	2.637e^-5	0.348	INTERGENIC
X	21845852	X_21845852_SNP [dm3] X_22444016_SNP [dm6]	C	T	2.643e^-5	0.348	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13660682	3R_13660682_SNP [dm3] 3R_17834960_SNP [dm6]	T	C	2.657e^-5	0.348	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	15231524	3L_15231524_SNP [dm3] 3L_15238424_SNP [dm6]	C	G	2.669e^-5	0.348	SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25604200	3R_25604200_SNP [dm3] 3R_29778478_SNP [dm6]	G	C	2.673e^-5	0.348	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3L	11020400	3L_11020400_SNP [dm3] 3L_11027300_SNP [dm6]	C	T	2.689e^-5	0.348	NON_SYNONYMOUS_CODING CG32079 UPSTREAM CG32081
3R	23443124	3R_23443124_SNP [dm3] 3R_27617402_SNP [dm6]	G	T	2.692e^-5	0.348	INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21805619	X_21805619_SNP [dm3] X_22403784_SNP [dm6]	A	C	2.700e^-5	0.348	INTERGENIC	transposable element FlyBase
3R	13667832	3R_13667832_SNP [dm3] 3R_17842110_SNP [dm6]	T	C	2.706e^-5	0.348	INTRON tinc
2R	17024754	2R_17024754_SNP [dm3] 2R_21137249_SNP [dm6]	G	A	2.737e^-5	0.348	INTRON Magi
X	6316976	X_6316976_SNP [dm3] X_6422943_SNP [dm6]	C	A	2.764e^-5	0.348	DOWNSTREAM CG42340 INTERGENIC
3R	25803950	3R_25803950_SNP [dm3] 3R_29978228_SNP [dm6]	G	T	2.778e^-5	0.348	INTERGENIC
3L	5571511	3L_5571511_SNP [dm3] 3L_5578411_SNP [dm6]	G	T	2.791e^-5	0.348	INTERGENIC
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	2.816e^-5	0.348	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22620680	3L_22620680_SNP [dm3] 3L_22627580_SNP [dm6]	T	C	2.828e^-5	0.348	INTRON CG14459
X	21846561	X_21846561_SNP [dm3] X_22444725_SNP [dm6]	G	C	2.835e^-5	0.348	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	2.854e^-5	0.348	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18453296	3L_18453296_SNP [dm3] 3L_18460196_SNP [dm6]	A	C	2.945e^-5	0.355	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18453315	3L_18453315_SNP [dm3] 3L_18460215_SNP [dm6]	C	T	2.958e^-5	0.355	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	21845803	X_21845803_SNP [dm3] X_22443967_SNP [dm6]	G	A	3.002e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	17024748	2R_17024748_SNP [dm3] 2R_21137243_SNP [dm6]	T	A	3.077e^-5	0.355	INTRON Magi
2R	14180598	2R_14180598_SNP [dm3] 2R_18293093_SNP [dm6]	G	C	3.083e^-5	0.355	UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	9388886	2L_9388886_SNP [dm3] 2L_9388886_SNP [dm6]	C	T	3.127e^-5	0.355	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14062019	X_14062019_SNP [dm3] X_14167986_SNP [dm6]	T	C	3.148e^-5	0.355	INTERGENIC
X	21845536	X_21845536_SNP [dm3] X_22443700_SNP [dm6]	T	G	3.181e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	13486058	2L_13486058_INS [dm3] 2L_13486058_INS [dm6]	T	TT	3.221e^-5	0.355	INTRON CG42784
X	14062590	X_14062590_SNP [dm3] X_14168557_SNP [dm6]	T	A	3.226e^-5	0.355	INTERGENIC
2R	9212885	2R_9212885_SNP [dm3] 2R_13325380_SNP [dm6]	T	G	3.239e^-5	0.355	INTERGENIC
2L	15464299	2L_15464299_SNP [dm3] 2L_15464299_SNP [dm6]	G	A	3.283e^-5	0.355	DOWNSTREAM CR44863 INTERGENIC
3L	13976280	3L_13976280_SNP [dm3] 3L_13983180_SNP [dm6]	G	A	3.289e^-5	0.355	SYNONYMOUS_CODING CG17364
X	21845860	X_21845860_SNP [dm3] X_22444024_SNP [dm6]	C	T	3.323e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4900694	2L_4900694_SNP [dm3] 2L_4900694_SNP [dm6]	G	T	3.325e^-5	0.355	INTRON CG3036
X	9205331	X_9205331_SNP [dm3] X_9311298_SNP [dm6]	T	A	3.329e^-5	0.355	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10344734	3R_10344734_SNP [dm3] 3R_14519012_SNP [dm6]	G	A	3.343e^-5	0.355	INTRON Pde6
X	14062596	X_14062596_SNP [dm3] X_14168563_SNP [dm6]	T	A	3.378e^-5	0.355	INTERGENIC
3L	7158950	3L_7158950_SNP [dm3] 3L_7165850_SNP [dm6]	G	A	3.406e^-5	0.355	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20899565	2L_20899565_SNP [dm3] 2L_20899565_SNP [dm6]	A	G	3.409e^-5	0.355	INTRON sky & 1 other
3L	7849623	3L_7849623_SNP [dm3] 3L_7856523_SNP [dm6]	G	T	3.454e^-5	0.355	UPSTREAM Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20727485	3R_20727485_SNP [dm3] 3R_24901763_SNP [dm6]	A	T	3.473e^-5	0.355	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21845689	X_21845689_DEL [dm3] X_22443853_DEL [dm6]	GGAT	G	3.532e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14062152	X_14062152_SNP [dm3] X_14168119_SNP [dm6]	T	A	3.566e^-5	0.355	INTERGENIC
3R	9996739	3R_9996739_SNP [dm3] 3R_14171017_SNP [dm6]	G	A	3.567e^-5	0.355	UTR_3_PRIME Dop1R1
3R	26459252	3R_26459252_DEL [dm3] 3R_30633530_DEL [dm6]	AATTAGT	A	3.607e^-5	0.355	INTERGENIC
2L	15761534	2L_15761534_SNP [dm3] 2L_15761534_SNP [dm6]	A	T	3.618e^-5	0.355	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	16133059	X_16133059_SNP [dm3] X_16239026_SNP [dm6]	A	T	3.618e^-5	0.355	INTERGENIC
2R	17020434	2R_17020434_SNP [dm3] 2R_21132929_SNP [dm6]	T	G	3.642e^-5	0.355	INTRON Magi
3R	10345983	3R_10345983_SNP [dm3] 3R_14520261_SNP [dm6]	G	A	3.647e^-5	0.355	UPSTREAM Cyp313a1 INTRON Pde6
2L	11947453	2L_11947453_SNP [dm3] 2L_11947453_SNP [dm6]	T	C	3.715e^-5	0.355	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
3R	8560304	3R_8560304_SNP [dm3] 3R_12734582_SNP [dm6]	A	C	3.715e^-5	0.355	INTERGENIC
3L	7135748	3L_7135748_SNP [dm3] 3L_7142648_SNP [dm6]	A	G	3.725e^-5	0.355	SYNONYMOUS_CODING melt DOWNSTREAM corn
3R	19894819	3R_19894819_INS [dm3] 3R_24069097_INS [dm6]	A	AA	3.788e^-5	0.355	INTRON 4EHP
3L	21475879	3L_21475879_SNP [dm3] 3L_21482779_SNP [dm6]	G	T	3.799e^-5	0.355	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	22310077	2L_22310077_SNP [dm3] 2L_22310077_SNP [dm6]	T	C	3.816e^-5	0.355	INTRON CG17018	transposable element FlyBase
3L	6448736	3L_6448736_SNP [dm3] 3L_6455636_SNP [dm6]	A	T	3.837e^-5	0.355	INTRON CG42747
2L	12923702	2L_12923702_SNP [dm3] 2L_12923702_SNP [dm6]	A	T	3.840e^-5	0.355	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	22092503	3R_22092503_SNP [dm3] 3R_26266781_SNP [dm6]	A	T	3.843e^-5	0.355	INTRON CG6154
3R	22092504	3R_22092504_SNP [dm3] 3R_26266782_SNP [dm6]	T	G	3.843e^-5	0.355	INTRON CG6154
2L	10825223	2L_10825223_SNP [dm3] 2L_10825223_SNP [dm6]	T	G	3.860e^-5	0.355	INTRON Nos
2L	12203577	2L_12203577_SNP [dm3] 2L_12203577_SNP [dm6]	C	A	3.873e^-5	0.355	INTRON aret
2L	2187773	2L_2187773_SNP [dm3] 2L_2187773_SNP [dm6]	G	A	3.890e^-5	0.355	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066	TF binding site mE1_TFBS_chinmo
2R	18680671	2R_18680671_SNP [dm3] 2R_22793166_SNP [dm6]	G	T	3.918e^-5	0.355	INTRON CG42260
2R	17020450	2R_17020450_SNP [dm3] 2R_21132945_SNP [dm6]	T	C	3.938e^-5	0.355	INTRON Magi
3R	13668539	3R_13668539_DEL [dm3] 3R_17842817_DEL [dm6]	GGA	G	3.943e^-5	0.355	INTRON tinc
2L	10352369	2L_10352369_SNP [dm3] 2L_10352369_SNP [dm6]	A	G	3.950e^-5	0.355	UPSTREAM CG34367 INTRON CG34367
2L	9114636	2L_9114636_SNP [dm3] 2L_9114636_SNP [dm6]	G	A	4.000e^-5	0.355	INTERGENIC
2L	19652093	2L_19652093_SNP [dm3] 2L_19652093_SNP [dm6]	G	A	4.026e^-5	0.355	INTRON Lar
2L	19652094	2L_19652094_SNP [dm3] 2L_19652094_SNP [dm6]	T	C	4.026e^-5	0.355	INTRON Lar
X	21837442	X_21837442_SNP [dm3] X_22435607_SNP [dm6]	G	A	4.030e^-5	0.355	INTERGENIC	transposable element FlyBase
2R	17020406	2R_17020406_SNP [dm3] 2R_21132901_SNP [dm6]	C	T	4.030e^-5	0.355	SYNONYMOUS_CODING Magi
X	4167850	X_4167850_SNP [dm3] X_4273817_SNP [dm6]	T	G	4.040e^-5	0.355	INTERGENIC
2L	10968621	2L_10968621_SNP [dm3] 2L_10968621_SNP [dm6]	T	G	4.052e^-5	0.355	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	4.078e^-5	0.355	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
X	11844948	X_11844948_SNP [dm3] X_11950915_SNP [dm6]	C	G	4.082e^-5	0.355	INTRON cac
X	21837393	X_21837393_SNP [dm3] X_22435558_SNP [dm6]	C	T	4.094e^-5	0.355	INTERGENIC	transposable element FlyBase
X	17045206	X_17045206_SNP [dm3] X_17151173_SNP [dm6]	G	T	4.096e^-5	0.355	DOWNSTREAM xmas-1 & 1 other INTERGENIC
2R	17151972	2R_17151972_SNP [dm3] 2R_21264467_SNP [dm6]	C	T	4.133e^-5	0.355	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
3L	1679278	3L_1679278_SNP [dm3] 3L_1679278_SNP [dm6]	A	C	4.143e^-5	0.355	INTRON CG7991
2L	13486037	2L_13486037_SNP [dm3] 2L_13486037_SNP [dm6]	G	A	4.146e^-5	0.355	INTRON CG42784
3L	13259748	3L_13259748_SNP [dm3] 3L_13266648_SNP [dm6]	C	A	4.155e^-5	0.355	INTRON caps
2L	13347482	2L_13347482_SNP [dm3] 2L_13347482_SNP [dm6]	A	T	4.201e^-5	0.355	UPSTREAM CG16826 INTERGENIC
3L	1015070	3L_1015070_SNP [dm3] 3L_1015070_SNP [dm6]	C	A	4.241e^-5	0.355	INTRON trio
3R	20722125	3R_20722125_SNP [dm3] 3R_24896403_SNP [dm6]	G	T	4.254e^-5	0.355	SPLICE_SITE_REGION CG11069 INTRON CG11069
3L	10700604	3L_10700604_SNP [dm3] 3L_10707504_SNP [dm6]	A	G	4.294e^-5	0.355	INTERGENIC
3R	14978662	3R_14978662_SNP [dm3] 3R_19152940_SNP [dm6]	G	T	4.308e^-5	0.355	INTRON CG5835
X	9425511	X_9425511_SNP [dm3] X_9531478_SNP [dm6]	A	G	4.315e^-5	0.355	INTRON CG32700
2L	11947420	2L_11947420_DEL [dm3] 2L_11947420_DEL [dm6]	TCT	T	4.345e^-5	0.355	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
2R	7475133	2R_7475133_SNP [dm3] 2R_11587628_SNP [dm6]	T	A	4.362e^-5	0.355	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	7475136	2R_7475136_SNP [dm3] 2R_11587631_SNP [dm6]	T	G	4.362e^-5	0.355	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
X	21837678	X_21837678_MNP [dm3] X_22435843_MNP [dm6]	AGT	GCA	4.363e^-5	0.355	INTERGENIC	transposable element FlyBase
2L	10967928	2L_10967928_SNP [dm3] 2L_10967928_SNP [dm6]	A	G	4.364e^-5	0.355	UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11822820	2R_11822820_SNP [dm3] 2R_15935315_SNP [dm6]	C	A	4.377e^-5	0.355	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21846648	X_21846648_SNP [dm3] X_22444812_SNP [dm6]	T	C	4.381e^-5	0.355	SPLICE_SITE_REGION CG14621 UTR_5_PRIME CG14621 INTRON CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	22333764	3R_22333764_SNP [dm3] 3R_26508042_SNP [dm6]	T	C	4.388e^-5	0.355	INTRON plum
X	11340923	X_11340923_SNP [dm3] X_11446890_SNP [dm6]	T	C	4.433e^-5	0.355	DOWNSTREAM Sk1 INTRON Evi5
3R	15040648	3R_15040648_SNP [dm3] 3R_19214926_SNP [dm6]	C	T	4.436e^-5	0.355	DOWNSTREAM vib INTRON cry
3R	10334117	3R_10334117_DEL [dm3] 3R_14508395_DEL [dm6]	ATT	G	4.493e^-5	0.355	DOWNSTREAM HtrA2 EXON CR44177
3R	16774607	3R_16774607_SNP [dm3] 3R_20948885_SNP [dm6]	A	T	4.496e^-5	0.355	INTRON Atpalpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	3263996	3R_3263996_SNP [dm3] 3R_7438274_SNP [dm6]	G	C	4.506e^-5	0.355	INTERGENIC
3R	14797319	3R_14797319_SNP [dm3] 3R_18971597_SNP [dm6]	T	C	4.524e^-5	0.355	INTRON CG42613 & 1 other
X	17049970	X_17049970_SNP [dm3] X_17155937_SNP [dm6]	G	A	4.532e^-5	0.355	SYNONYMOUS_CODING xmas-2
2R	17994465	2R_17994465_SNP [dm3] 2R_22106960_SNP [dm6]	A	T	4.553e^-5	0.355	NON_SYNONYMOUS_CODING Vrp1 DOWNSTREAM CG6613 & 1 other
3L	11526632	3L_11526632_SNP [dm3] 3L_11533532_SNP [dm6]	T	A	4.565e^-5	0.355	INTRON Mob2
X	21845183	X_21845183_SNP [dm3] X_22443347_SNP [dm6]	G	A	4.588e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Ubx
3L	4648778	3L_4648778_SNP [dm3] 3L_4648778_SNP [dm6]	T	A	4.603e^-5	0.355	NON_SYNONYMOUS_CODING CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
2R	13917987	2R_13917987_SNP [dm3] 2R_18030482_SNP [dm6]	A	T	4.611e^-5	0.355	INTERGENIC
X	21845511	X_21845511_SNP [dm3] X_22443675_SNP [dm6]	G	T	4.612e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9354245	2L_9354245_SNP [dm3] 2L_9354245_SNP [dm6]	G	C	4.650e^-5	0.355	INTERGENIC
3R	17053609	3R_17053609_SNP [dm3] 3R_21227887_SNP [dm6]	C	T	4.667e^-5	0.355	INTRON Nelf-A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	10341737	3R_10341737_SNP [dm3] 3R_14516015_SNP [dm6]	T	C	4.674e^-5	0.355	SYNONYMOUS_CODING Pde6
2R	17873923	2R_17873923_SNP [dm3] 2R_21986418_SNP [dm6]	C	G	4.719e^-5	0.355	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10968290	2L_10968290_SNP [dm3] 2L_10968290_SNP [dm6]	A	T	4.728e^-5	0.355	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22333735	3R_22333735_SNP [dm3] 3R_26508013_SNP [dm6]	C	A	4.762e^-5	0.355	INTRON plum
2R	17024753	2R_17024753_SNP [dm3] 2R_21137248_SNP [dm6]	C	T	4.790e^-5	0.355	INTRON Magi
2R	14005316	2R_14005316_SNP [dm3] 2R_18117811_SNP [dm6]	T	G	4.817e^-5	0.355	DOWNSTREAM stau INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20722177	3R_20722177_SNP [dm3] 3R_24896455_SNP [dm6]	A	G	4.833e^-5	0.355	NON_SYNONYMOUS_CODING CG11069
X	21848117	X_21848117_SNP [dm3] X_22446281_SNP [dm6]	T	C	4.853e^-5	0.355	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21848127	X_21848127_SNP [dm3] X_22446291_SNP [dm6]	T	C	4.853e^-5	0.355	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6834690	X_6834690_SNP [dm3] X_6940657_SNP [dm6]	T	A	4.858e^-5	0.355	INTRON CG14431
2L	10967979	2L_10967979_SNP [dm3] 2L_10967979_SNP [dm6]	A	C	4.888e^-5	0.355	START_GAINED CG33129 UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26459302	3R_26459302_SNP [dm3] 3R_30633580_SNP [dm6]	G	A	4.898e^-5	0.355	INTERGENIC
X	10557415	X_10557415_SNP [dm3] X_10663382_SNP [dm6]	T	C	4.946e^-5	0.355	INTRON X11Lbeta
3R	17199144	3R_17199144_SNP [dm3] 3R_21373422_SNP [dm6]	C	T	4.954e^-5	0.355	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	2792860	3L_2792860_SNP [dm3] 3L_2792860_SNP [dm6]	G	T	4.968e^-5	0.355	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13878577	3R_13878577_SNP [dm3] 3R_18052855_SNP [dm6]	T	A	4.972e^-5	0.355	UTR_5_PRIME htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10968015	2L_10968015_SNP [dm3] 2L_10968015_SNP [dm6]	C	T	4.979e^-5	0.355	UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13486393	2L_13486393_SNP [dm3] 2L_13486393_SNP [dm6]	T	C	4.999e^-5	0.355	INTRON CG42784
X	21845517	X_21845517_SNP [dm3] X_22443681_SNP [dm6]	A	T	5.018e^-5	0.355	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	10345867	3R_10345867_SNP [dm3] 3R_14520145_SNP [dm6]	T	C	5.021e^-5	0.355	UPSTREAM Cyp313a1 INTRON Pde6
2L	6698981	2L_6698981_SNP [dm3] 2L_6698981_SNP [dm6]	A	T	5.046e^-5	0.355	INTRON Tsp
3R	15040660	3R_15040660_SNP [dm3] 3R_19214938_SNP [dm6]	T	G	5.056e^-5	0.355	DOWNSTREAM vib INTRON cry
2R	18865927	2R_18865927_SNP [dm3] 2R_22978404_SNP [dm6]	T	A	5.094e^-5	0.357	INTERGENIC
3R	10344347	3R_10344347_SNP [dm3] 3R_14518625_SNP [dm6]	C	T	5.115e^-5	0.357	SYNONYMOUS_CODING Pde6
X	9577253	X_9577253_SNP [dm3] X_9683220_SNP [dm6]	G	A	5.177e^-5	0.36	START_GAINED nej UTR_5_PRIME nej	TF binding site BDTNP1_TFBS_dl
X	3936959	X_3936959_SNP [dm3] X_4042926_SNP [dm6]	T	C	5.195e^-5	0.36	INTERGENIC
2L	1551476	2L_1551476_SNP [dm3] 2L_1551476_SNP [dm6]	A	G	5.238e^-5	0.361	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13013984	3L_13013984_SNP [dm3] 3L_13020884_SNP [dm6]	C	T	5.340e^-5	0.362	INTRON AdenoK
3R	15040708	3R_15040708_SNP [dm3] 3R_19214986_SNP [dm6]	C	A	5.342e^-5	0.362	DOWNSTREAM vib INTRON cry
3R	13655815	3R_13655815_SNP [dm3] 3R_17830093_SNP [dm6]	G	C	5.366e^-5	0.362	INTRON tinc
2R	9212854	2R_9212854_SNP [dm3] 2R_13325349_SNP [dm6]	C	G	5.372e^-5	0.362	INTERGENIC
X	17239294	X_17239294_SNP [dm3] X_17345261_SNP [dm6]	G	T	5.411e^-5	0.362	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10968912	2L_10968912_SNP [dm3] 2L_10968912_SNP [dm6]	A	G	5.411e^-5	0.362	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10352413	3R_10352413_SNP [dm3] 3R_14526691_SNP [dm6]	T	C	5.433e^-5	0.362	INTRON Pde6
2L	10968007	2L_10968007_SNP [dm3] 2L_10968007_SNP [dm6]	A	T	5.436e^-5	0.362	UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5139013	2R_5139013_SNP [dm3] 2R_9251508_SNP [dm6]	G	A	5.442e^-5	0.362	UPSTREAM CG30343 DOWNSTREAM Pkn INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
3R	10345795	3R_10345795_SNP [dm3] 3R_14520073_SNP [dm6]	G	T	5.478e^-5	0.362	UPSTREAM Cyp313a1 INTRON Pde6
X	21058580	X_21058580_SNP [dm3] X_21187553_SNP [dm6]	A	T	5.519e^-5	0.362	UPSTREAM CR45506 INTERGENIC
2L	7972187	2L_7972187_SNP [dm3] 2L_7972187_SNP [dm6]	T	G	5.537e^-5	0.362	INTRON Snoo
3R	3383104	3R_3383104_SNP [dm3] 3R_7557382_SNP [dm6]	A	G	5.575e^-5	0.362	INTERGENIC
X	9569483	X_9569483_SNP [dm3] X_9675450_SNP [dm6]	A	C	5.595e^-5	0.362	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16429619	X_16429619_SNP [dm3] X_16535586_SNP [dm6]	G	A	5.604e^-5	0.362	INTERGENIC
2R	9206363	2R_9206363_SNP [dm3] 2R_13318858_SNP [dm6]	T	C	5.605e^-5	0.362	INTERGENIC
3R	10341740	3R_10341740_SNP [dm3] 3R_14516018_SNP [dm6]	T	C	5.611e^-5	0.362	SYNONYMOUS_CODING Pde6
X	9205286	X_9205286_SNP [dm3] X_9311253_SNP [dm6]	A	C	5.626e^-5	0.362	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21260219	X_21260219_SNP [dm3] X_21389192_SNP [dm6]	G	C	5.649e^-5	0.362	NON_SYNONYMOUS_CODING mst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10968267	2L_10968267_SNP [dm3] 2L_10968267_SNP [dm6]	G	A	5.658e^-5	0.362	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	10345177	3R_10345177_INS [dm3] 3R_14519455_INS [dm6]	T	TT	5.669e^-5	0.362	INTRON Pde6
3R	10351390	3R_10351390_SNP [dm3] 3R_14525668_SNP [dm6]	C	A	5.692e^-5	0.362	INTRON Pde6
2L	19652019	2L_19652019_SNP [dm3] 2L_19652019_SNP [dm6]	A	G	5.693e^-5	0.362	INTRON Lar
3L	5746641	3L_5746641_SNP [dm3] 3L_5753541_SNP [dm6]	G	T	5.750e^-5	0.362	UPSTREAM Ubp64E INTRON Ubp64E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2752530	3R_2752530_SNP [dm3] 3R_6926808_SNP [dm6]	C	A	5.757e^-5	0.362	INTRON Antp
3R	15040656	3R_15040656_SNP [dm3] 3R_19214934_SNP [dm6]	C	A	5.758e^-5	0.362	DOWNSTREAM vib INTRON cry
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	5.766e^-5	0.362	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	6902495	3R_6902495_DEL [dm3] 3R_11076773_DEL [dm6]	CATCTGCAGACC...	C	5.838e^-5	0.365	INTERGENIC
3L	1280073	3L_1280073_SNP [dm3] 3L_1280073_SNP [dm6]	G	A	5.872e^-5	0.366	INTRON CG32333
X	16877763	X_16877763_SNP [dm3] X_16983730_SNP [dm6]	G	A	5.909e^-5	0.366	INTRON CG45002
2L	6711102	2L_6711102_SNP [dm3] 2L_6711102_SNP [dm6]	G	A	5.915e^-5	0.366	DOWNSTREAM AkhR INTERGENIC
3L	13188178	3L_13188178_SNP [dm3] 3L_13195078_SNP [dm6]	G	T	5.931e^-5	0.366	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21845680	X_21845680_INS [dm3] X_22443844_INS [dm6]	T	TGAAT	5.945e^-5	0.366	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	2432101	X_2432101_SNP [dm3] X_2538068_SNP [dm6]	C	A	6.040e^-5	0.368	INTRON trol
2R	5833165	2R_5833165_SNP [dm3] 2R_9945660_SNP [dm6]	A	G	6.085e^-5	0.368	UPSTREAM Mef2 INTRON Mef2
2L	15100132	2L_15100132_SNP [dm3] 2L_15100132_SNP [dm6]	G	A	6.087e^-5	0.368	INTERGENIC
2L	9715463	2L_9715463_DEL [dm3] 2L_9715463_DEL [dm6]	TCTGCATT	T	6.094e^-5	0.368	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl
3R	26757510	3R_26757510_DEL [dm3] 3R_30931788_DEL [dm6]	AA	A	6.102e^-5	0.368	INTERGENIC
3L	9922019	3L_9922019_SNP [dm3] 3L_9928919_SNP [dm6]	A	C	6.111e^-5	0.368	INTRON CG34356
2L	13730751	2L_13730751_INS [dm3] 2L_13730751_INS [dm6]	T	TATCCCACTCAAACTCAAGA...	6.139e^-5	0.368	INTERGENIC
2L	9885211	2L_9885211_SNP [dm3] 2L_9885211_SNP [dm6]	C	G	6.162e^-5	0.368	INTRON nAChRalpha6
3R	25418466	3R_25418466_SNP [dm3] 3R_29592744_SNP [dm6]	G	C	6.162e^-5	0.368	UPSTREAM alph INTRON alph	TF binding site BDTNP1_TFBS_dl
3L	7736570	3L_7736570_SNP [dm3] 3L_7743470_SNP [dm6]	T	C	6.251e^-5	0.371	UPSTREAM Snmp2 INTRON CG32373
2L	17533179	2L_17533179_SNP [dm3] 2L_17533179_SNP [dm6]	C	G	6.259e^-5	0.371	UPSTREAM CG15145 INTERGENIC
3L	6448733	3L_6448733_SNP [dm3] 3L_6455633_SNP [dm6]	T	G	6.305e^-5	0.372	INTRON CG42747
2L	15337447	2L_15337447_SNP [dm3] 2L_15337447_SNP [dm6]	C	A	6.315e^-5	0.372	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8678199	X_8678199_SNP [dm3] X_8784166_SNP [dm6]	T	C	6.358e^-5	0.374	INTRON Lim1
3R	10349734	3R_10349734_SNP [dm3] 3R_14524012_SNP [dm6]	C	T	6.429e^-5	0.376	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	6712848	2L_6712848_SNP [dm3] 2L_6712848_SNP [dm6]	A	G	6.431e^-5	0.376	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21837631	X_21837631_SNP [dm3] X_22435796_SNP [dm6]	A	G	6.464e^-5	0.376	INTERGENIC	transposable element FlyBase
2R	1939017	2R_1939017_SNP [dm3] 2R_6051512_SNP [dm6]	C	T	6.479e^-5	0.376	INTRON CCHa2-R	TF binding site mE1_TFBS_inv
2R	628124	2R_628124_SNP [dm3] 2R_4740619_SNP [dm6]	A	C	6.612e^-5	0.377	INTERGENIC	transposable element FlyBase
3L	22622322	3L_22622322_SNP [dm3] 3L_22629222_SNP [dm6]	G	C	6.614e^-5	0.377	INTRON CG14459
3L	21599560	3L_21599560_SNP [dm3] 3L_21606460_SNP [dm6]	T	A	6.625e^-5	0.377	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi
3R	2238940	3R_2238940_SNP [dm3] 3R_6413218_SNP [dm6]	T	G	6.649e^-5	0.377	INTRON gpp
2L	10967919	2L_10967919_SNP [dm3] 2L_10967919_SNP [dm6]	C	T	6.677e^-5	0.377	UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15339624	X_15339624_SNP [dm3] X_15445591_SNP [dm6]	A	C	6.691e^-5	0.377	DOWNSTREAM Scamp INTERGENIC
2R	19519294	2R_19519294_SNP [dm3] 2R_23631771_SNP [dm6]	A	T	6.708e^-5	0.377	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15458421	2L_15458421_SNP [dm3] 2L_15458421_SNP [dm6]	T	G	6.756e^-5	0.377	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9354651	2L_9354651_INS [dm3] 2L_9354651_INS [dm6]	A	AGA	6.779e^-5	0.377	INTERGENIC
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	6.800e^-5	0.377	INTRON mspo
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	6.803e^-5	0.377	INTRON CG7985
2L	15461665	2L_15461665_SNP [dm3] 2L_15461665_SNP [dm6]	A	G	6.810e^-5	0.377	INTERGENIC
2L	9115771	2L_9115771_SNP [dm3] 2L_9115771_SNP [dm6]	T	C	6.817e^-5	0.377	INTERGENIC
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	6.827e^-5	0.377	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17159597	2R_17159597_SNP [dm3] 2R_21272092_SNP [dm6]	T	C	6.841e^-5	0.377	INTRON Rgk3
2L	18505589	2L_18505589_SNP [dm3] 2L_18505589_SNP [dm6]	C	T	6.850e^-5	0.377	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10350478	3R_10350478_SNP [dm3] 3R_14524756_SNP [dm6]	C	T	6.874e^-5	0.377	INTRON Pde6
3R	6903257	3R_6903257_SNP [dm3] 3R_11077535_SNP [dm6]	T	C	6.877e^-5	0.377	INTERGENIC
2L	13485426	2L_13485426_SNP [dm3] 2L_13485426_SNP [dm6]	T	A	6.885e^-5	0.377	INTRON CG42784
2L	22197621	2L_22197621_SNP [dm3] 2L_22197621_SNP [dm6]	G	A	6.914e^-5	0.377	INTRON Ir40a
2L	14055389	2L_14055389_SNP [dm3] 2L_14055389_SNP [dm6]	T	C	6.930e^-5	0.377	INTRON nAChRalpha5
2L	17612820	2L_17612820_SNP [dm3] 2L_17612820_SNP [dm6]	T	C	6.947e^-5	0.377	INTERGENIC
X	21845738	X_21845738_SNP [dm3] X_22443902_SNP [dm6]	G	A	6.957e^-5	0.377	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	21276827	X_21276827_DEL [dm3] X_21405800_DEL [dm6]	CC	C	6.971e^-5	0.377	INTERGENIC
3L	8652977	3L_8652977_SNP [dm3] 3L_8659877_SNP [dm6]	T	A	6.998e^-5	0.377	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5190470	2R_5190470_SNP [dm3] 2R_9302965_SNP [dm6]	G	A	7.033e^-5	0.378	UTR_3_PRIME Myd88 DOWNSTREAM Drep-2 & 1 other
3L	1870613	3L_1870613_SNP [dm3] 3L_1870613_SNP [dm6]	T	C	7.074e^-5	0.379	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	525044	X_525044_SNP [dm3] X_631011_SNP [dm6]	T	C	7.115e^-5	0.38	SYNONYMOUS_CODING l_1_1Bi	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	18478967	3L_18478967_SNP [dm3] 3L_18485867_SNP [dm6]	G	C	7.179e^-5	0.38	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	13668573	3R_13668573_SNP [dm3] 3R_17842851_SNP [dm6]	G	C	7.234e^-5	0.38	INTRON tinc
2L	6699066	2L_6699066_SNP [dm3] 2L_6699066_SNP [dm6]	G	C	7.274e^-5	0.38	INTRON Tsp
3R	16773685	3R_16773685_DEL [dm3] 3R_20947963_DEL [dm6]	CCC	C	7.274e^-5	0.38	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
X	16432209	X_16432209_SNP [dm3] X_16538176_SNP [dm6]	C	G	7.289e^-5	0.38	DOWNSTREAM CG9903 INTERGENIC
X	16432215	X_16432215_SNP [dm3] X_16538182_SNP [dm6]	G	C	7.289e^-5	0.38	DOWNSTREAM CG9903 INTERGENIC
X	16432219	X_16432219_SNP [dm3] X_16538186_SNP [dm6]	C	T	7.289e^-5	0.38	DOWNSTREAM CG9903 INTERGENIC
3R	19894761	3R_19894761_SNP [dm3] 3R_24069039_SNP [dm6]	T	C	7.289e^-5	0.38	INTRON 4EHP
3L	18333910	3L_18333910_SNP [dm3] 3L_18340810_SNP [dm6]	G	C	7.340e^-5	0.38	INTERGENIC
X	21009094	X_21009094_SNP [dm3] X_21138067_SNP [dm6]	T	C	7.347e^-5	0.38	SYNONYMOUS_CODING CG34120
2L	15541742	2L_15541742_SNP [dm3] 2L_15541742_SNP [dm6]	A	C	7.348e^-5	0.38	INTERGENIC
3R	16988397	3R_16988397_SNP [dm3] 3R_21162675_SNP [dm6]	G	T	7.358e^-5	0.38	INTRON SNF4Agamma
3L	2034082	3L_2034082_SNP [dm3] 3L_2034082_SNP [dm6]	A	C	7.399e^-5	0.38	INTERGENIC
X	17427893	X_17427893_SNP [dm3] X_17533860_SNP [dm6]	A	C	7.408e^-5	0.38	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17055321	X_17055321_SNP [dm3] X_17161288_SNP [dm6]	G	A	7.414e^-5	0.38	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	12526263	3R_12526263_SNP [dm3] 3R_16700541_SNP [dm6]	A	T	7.476e^-5	0.381	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4078908	3L_4078908_SNP [dm3] 3L_4078908_SNP [dm6]	A	C	7.510e^-5	0.381	INTRON Gad1
3L	21853306	3L_21853306_SNP [dm3] 3L_21860206_SNP [dm6]	T	C	7.548e^-5	0.381	INTRON mub	TF binding site mE1_TFBS_inv
3R	1185637	3R_1185637_SNP [dm3] 3R_5359915_SNP [dm6]	C	G	7.550e^-5	0.381	INTRON Cerk	TF binding site mE1_TFBS_cad
X	21846569	X_21846569_SNP [dm3] X_22444733_SNP [dm6]	G	T	7.585e^-5	0.381	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	15100012	2L_15100012_SNP [dm3] 2L_15100012_SNP [dm6]	G	A	7.598e^-5	0.381	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14005315	2R_14005315_SNP [dm3] 2R_18117810_SNP [dm6]	A	G	7.622e^-5	0.381	DOWNSTREAM stau INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13436703	2R_13436703_SNP [dm3] 2R_17549198_SNP [dm6]	G	A	7.637e^-5	0.381	NON_SYNONYMOUS_CODING MESR4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13956348	2R_13956348_SNP [dm3] 2R_18068843_SNP [dm6]	T	C	7.640e^-5	0.381	INTRON CG34386
2L	15760148	2L_15760148_SNP [dm3] 2L_15760148_SNP [dm6]	A	T	7.666e^-5	0.381	INTRON Gli	TF binding site mE1_TFBS_cad
X	17427833	X_17427833_SNP [dm3] X_17533800_SNP [dm6]	T	C	7.682e^-5	0.381	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8700501	2R_8700501_SNP [dm3] 2R_12812996_SNP [dm6]	G	A	7.715e^-5	0.381	INTERGENIC
2L	15464441	2L_15464441_INS [dm3] 2L_15464441_INS [dm6]	T	TA	7.730e^-5	0.381	DOWNSTREAM CR44863 INTERGENIC
3L	8904639	3L_8904639_SNP [dm3] 3L_8911539_SNP [dm6]	G	A	7.731e^-5	0.381	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr UPSTREAM Tsp66E
3L	3172263	3L_3172263_SNP [dm3] 3L_3172263_SNP [dm6]	G	A	7.744e^-5	0.381	SYNONYMOUS_CODING CG14963 DOWNSTREAM CG32278 & 1 other
3R	15040651	3R_15040651_SNP [dm3] 3R_19214929_SNP [dm6]	T	C	7.808e^-5	0.382	DOWNSTREAM vib INTRON cry
X	17044821	X_17044821_INS [dm3] X_17150788_INS [dm6]	T	TT	7.817e^-5	0.382	DOWNSTREAM xmas-1 & 1 other INTERGENIC
2L	15458068	2L_15458068_SNP [dm3] 2L_15458068_SNP [dm6]	T	G	7.823e^-5	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20722140	3R_20722140_SNP [dm3] 3R_24896418_SNP [dm6]	T	C	7.899e^-5	0.385	SYNONYMOUS_CODING CG11069
X	12749881	X_12749881_SNP [dm3] X_12855848_SNP [dm6]	G	A	7.931e^-5	0.385	SYNONYMOUS_CODING CG4661 INTRON Pde9
3R	10360361	3R_10360361_SNP [dm3] 3R_14534639_SNP [dm6]	T	A	8.031e^-5	0.387	INTRON Pde6
2R	10691176	2R_10691176_SNP [dm3] 2R_14803671_SNP [dm6]	C	T	8.048e^-5	0.387	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	9205375	X_9205375_SNP [dm3] X_9311342_SNP [dm6]	G	A	8.048e^-5	0.387	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22598682	3L_22598682_SNP [dm3] 3L_22605582_SNP [dm6]	C	A	8.065e^-5	0.387	UPSTREAM CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad
2R	13423381	2R_13423381_SNP [dm3] 2R_17535876_SNP [dm6]	C	T	8.096e^-5	0.387	UPSTREAM eIF3-S9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	18333933	3L_18333933_SNP [dm3] 3L_18340833_SNP [dm6]	G	C	8.098e^-5	0.387	INTERGENIC
2L	8501477	2L_8501477_SNP [dm3] 2L_8501477_SNP [dm6]	G	C	8.100e^-5	0.387	INTRON Dh31
2R	13442985	2R_13442985_SNP [dm3] 2R_17555480_SNP [dm6]	T	C	8.129e^-5	0.387	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad
2L	4095884	2L_4095884_INS [dm3] 2L_4095884_INS [dm6]	G	GG	8.172e^-5	0.387	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13486819	2L_13486819_SNP [dm3] 2L_13486819_SNP [dm6]	A	G	8.224e^-5	0.387	INTRON CG42784
2L	18814859	2L_18814859_SNP [dm3] 2L_18814859_SNP [dm6]	A	G	8.265e^-5	0.387	DOWNSTREAM CG17325 & 1 other INTERGENIC
3R	21990044	3R_21990044_SNP [dm3] 3R_26164322_SNP [dm6]	C	T	8.276e^-5	0.387	INTERGENIC
3L	13259753	3L_13259753_SNP [dm3] 3L_13266653_SNP [dm6]	C	T	8.299e^-5	0.387	INTRON caps
2L	15551964	2L_15551964_SNP [dm3] 2L_15551964_SNP [dm6]	C	A	8.360e^-5	0.387	UTR_3_PRIME CG15256 UPSTREAM kek3 DOWNSTREAM CG15256
3R	5649811	3R_5649811_SNP [dm3] 3R_9824089_SNP [dm6]	A	C	8.371e^-5	0.387	UPSTREAM CG34302 DOWNSTREAM CR42858 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9803951	2L_9803951_SNP [dm3] 2L_9803951_SNP [dm6]	T	G	8.374e^-5	0.387	INTRON nAChRalpha6
2L	15458124	2L_15458124_SNP [dm3] 2L_15458124_SNP [dm6]	T	A	8.392e^-5	0.387	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11443884	2L_11443884_DEL [dm3] 2L_11443884_DEL [dm6]	TT	T	8.400e^-5	0.387	INTRON salm
3L	855070	3L_855070_SNP [dm3] 3L_855070_SNP [dm6]	A	G	8.401e^-5	0.387	INTRON dpr20	TF binding site mE1_TFBS_cad
2L	11017608	2L_11017608_SNP [dm3] 2L_11017608_SNP [dm6]	C	T	8.406e^-5	0.387	NON_SYNONYMOUS_CODING CG14913 INTRON Samuel
3L	13011925	3L_13011925_SNP [dm3] 3L_13018825_SNP [dm6]	T	G	8.415e^-5	0.387	SYNONYMOUS_CODING ste14 UPSTREAM mRpL20 DOWNSTREAM AdenoK EXON CR45445	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10219059	3R_10219059_SNP [dm3] 3R_14393337_SNP [dm6]	A	T	8.453e^-5	0.387	NON_SYNONYMOUS_CODING cv-c
3L	5737669	3L_5737669_SNP [dm3] 3L_5744569_SNP [dm6]	A	C	8.510e^-5	0.387	UTR_3_PRIME sif INTRON sif
3L	1821670	3L_1821670_SNP [dm3] 3L_1821670_SNP [dm6]	C	T	8.513e^-5	0.387	INTRON GV1
2L	15729871	2L_15729871_SNP [dm3] 2L_15729871_SNP [dm6]	C	G	8.541e^-5	0.387	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2329906	X_2329906_SNP [dm3] X_2435873_SNP [dm6]	T	C	8.553e^-5	0.387	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	10355097	3R_10355097_SNP [dm3] 3R_14529375_SNP [dm6]	G	A	8.586e^-5	0.387	SYNONYMOUS_CODING Pde6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20886645	2L_20886645_SNP [dm3] 2L_20886645_SNP [dm6]	T	A	8.589e^-5	0.387	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_Trl
2L	6495253	2L_6495253_SNP [dm3] 2L_6495253_SNP [dm6]	C	G	8.590e^-5	0.387	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
X	21233451	X_21233451_SNP [dm3] X_21362424_SNP [dm6]	G	A	8.605e^-5	0.387	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6910396	3R_6910396_SNP [dm3] 3R_11084674_SNP [dm6]	A	C	8.632e^-5	0.387	EXON CR44940
2R	2601741	2R_2601741_SNP [dm3] 2R_6714236_SNP [dm6]	G	T	8.637e^-5	0.387	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13083663	2L_13083663_SNP [dm3] 2L_13083663_SNP [dm6]	C	G	8.644e^-5	0.387	INTERGENIC
3R	10344266	3R_10344266_SNP [dm3] 3R_14518544_SNP [dm6]	G	T	8.678e^-5	0.387	SYNONYMOUS_CODING Pde6
2R	16644840	2R_16644840_SNP [dm3] 2R_20757335_SNP [dm6]	A	G	8.687e^-5	0.387	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10349795	3R_10349795_SNP [dm3] 3R_14524073_SNP [dm6]	C	T	8.729e^-5	0.388	INTRON Pde6
3R	10348705	3R_10348705_SNP [dm3] 3R_14522983_SNP [dm6]	A	G	8.765e^-5	0.389	UTR_3_PRIME Cyp313a1 INTRON Pde6
3L	11526566	3L_11526566_INS [dm3] 3L_11533466_INS [dm6]	C	TA	8.807e^-5	0.389	INTRON Mob2
2L	15760944	2L_15760944_SNP [dm3] 2L_15760944_SNP [dm6]	G	C	8.852e^-5	0.389	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	19468776	3R_19468776_SNP [dm3] 3R_23643054_SNP [dm6]	G	C	8.873e^-5	0.389	INTRON CG31145
X	18922818	X_18922818_SNP [dm3] X_19028785_SNP [dm6]	G	A	8.909e^-5	0.389	DOWNSTREAM CG43759 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3670289	2L_3670289_SNP [dm3] 2L_3670289_SNP [dm6]	G	A	8.933e^-5	0.389	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
3L	6448738	3L_6448738_SNP [dm3] 3L_6455638_SNP [dm6]	A	T	8.948e^-5	0.389	INTRON CG42747
2R	19339106	2R_19339106_DEL [dm3] 2R_23451583_DEL [dm6]	CACACACAC	C	8.978e^-5	0.389	INTRON CG43795
3R	13655973	3R_13655973_SNP [dm3] 3R_17830251_SNP [dm6]	C	T	8.991e^-5	0.389	INTRON tinc
2L	13485801	2L_13485801_SNP [dm3] 2L_13485801_SNP [dm6]	A	G	9.027e^-5	0.389	INTRON CG42784
3L	18334482	3L_18334482_SNP [dm3] 3L_18341382_SNP [dm6]	T	C	9.030e^-5	0.389	INTERGENIC
X	21836923	X_21836923_SNP [dm3] X_22435088_SNP [dm6]	A	G	9.051e^-5	0.389	INTERGENIC	transposable element FlyBase
3L	22742763	3L_22742763_SNP [dm3] 3L_22749663_SNP [dm6]	C	T	9.062e^-5	0.389	SYNONYMOUS_CODING SPoCk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA transposable element FlyBase
2L	10968046	2L_10968046_SNP [dm3] 2L_10968046_SNP [dm6]	G	T	9.070e^-5	0.389	UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11919544	2L_11919544_SNP [dm3] 2L_11919544_SNP [dm6]	G	C	9.071e^-5	0.389	INTRON Pde1c
2R	11165729	2R_11165729_SNP [dm3] 2R_15278224_SNP [dm6]	T	C	9.094e^-5	0.389	SYNONYMOUS_CODING Trpm
3R	20727509	3R_20727509_SNP [dm3] 3R_24901787_SNP [dm6]	T	C	9.110e^-5	0.389	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5410256	2L_5410256_SNP [dm3] 2L_5410256_SNP [dm6]	G	A	9.119e^-5	0.389	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21331093	3R_21331093_SNP [dm3] 3R_25505371_SNP [dm6]	A	G	9.225e^-5	0.389	NON_SYNONYMOUS_CODING CG5107 UPSTREAM CG5111 DOWNSTREAM CR45651	TF binding site BDTNP1_TFBS_twi
3R	22365406	3R_22365406_SNP [dm3] 3R_26539684_SNP [dm6]	T	A	9.235e^-5	0.389	INTRON scrib	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	17490529	3R_17490529_SNP [dm3] 3R_21664807_SNP [dm6]	T	C	9.244e^-5	0.389	INTRON CG15497	TF binding site mE1_TFBS_bab1
3L	8568151	3L_8568151_SNP [dm3] 3L_8575051_SNP [dm6]	G	A	9.259e^-5	0.389	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5831371	2R_5831371_SNP [dm3] 2R_9943866_SNP [dm6]	A	T	9.262e^-5	0.389	UTR_5_PRIME Mef2 INTRON Mef2
2L	302900	2L_302900_SNP [dm3] 2L_302900_SNP [dm6]	C	T	9.323e^-5	0.389	UTR_3_PRIME Pi3K21B
2R	12160695	2R_12160695_SNP [dm3] 2R_16273190_SNP [dm6]	G	C	9.342e^-5	0.389	SYNONYMOUS_CODING CG33017	TF binding site mE1_TFBS_sens
3L	22609015	3L_22609015_SNP [dm3] 3L_22615915_SNP [dm6]	C	T	9.351e^-5	0.389	INTRON CG14459	TF binding site mE1_TFBS_sens
X	21837570	X_21837570_SNP [dm3] X_22435735_SNP [dm6]	G	C	9.424e^-5	0.389	INTERGENIC	transposable element FlyBase
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	9.432e^-5	0.389	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	9.444e^-5	0.389	INTRON tinc
X	18620248	X_18620248_SNP [dm3] X_18726215_SNP [dm6]	A	G	9.477e^-5	0.389	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15158791	3R_15158791_SNP [dm3] 3R_19333069_SNP [dm6]	G	A	9.495e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8371557	2L_8371557_SNP [dm3] 2L_8371557_SNP [dm6]	T	A	9.503e^-5	0.389	UPSTREAM CR45341 & 1 other INTRON CG17292
2R	6390112	2R_6390112_SNP [dm3] 2R_10502607_SNP [dm6]	C	T	9.526e^-5	0.389	INTRON lola
2R	12825532	2R_12825532_SNP [dm3] 2R_16938027_SNP [dm6]	T	G	9.539e^-5	0.389	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2L	10190156	2L_10190156_SNP [dm3] 2L_10190156_SNP [dm6]	A	G	9.556e^-5	0.389	SYNONYMOUS_CODING CG31874 INTRON Sur	TF binding site mE1_TFBS_cad
2L	10891152	2L_10891152_SNP [dm3] 2L_10891152_SNP [dm6]	A	C	9.577e^-5	0.389	INTERGENIC
3L	18449758	3L_18449758_SNP [dm3] 3L_18456658_SNP [dm6]	T	A	9.582e^-5	0.389	DOWNSTREAM CR44671 EXON CR44670
2L	15555360	2L_15555360_SNP [dm3] 2L_15555360_SNP [dm6]	A	T	9.596e^-5	0.389	INTRON kek3
2L	15762029	2L_15762029_SNP [dm3] 2L_15762029_SNP [dm6]	A	G	9.605e^-5	0.389	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	8615499	3R_8615499_SNP [dm3] 3R_12789777_SNP [dm6]	G	C	9.608e^-5	0.389	INTERGENIC
2L	9353105	2L_9353105_SNP [dm3] 2L_9353105_SNP [dm6]	C	T	9.715e^-5	0.389	INTERGENIC
X	20856562	X_20856562_INS [dm3] X_20985535_INS [dm6]	A	AG	9.761e^-5	0.389	DOWNSTREAM CG11666 INTERGENIC
X	16558105	X_16558105_SNP [dm3] X_16664072_SNP [dm6]	G	T	9.776e^-5	0.389	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
2L	15552136	2L_15552136_SNP [dm3] 2L_15552136_SNP [dm6]	G	A	9.797e^-5	0.389	UPSTREAM kek3 DOWNSTREAM CG15256 INTERGENIC
2L	15555369	2L_15555369_SNP [dm3] 2L_15555369_SNP [dm6]	G	C	9.812e^-5	0.389	INTRON kek3
2L	2445265	2L_2445265_SNP [dm3] 2L_2445265_SNP [dm6]	G	T	9.867e^-5	0.389	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
2R	1712226	2R_1712226_SNP [dm3] 2R_5824721_SNP [dm6]	C	G	9.881e^-5	0.389	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6078439	2R_6078439_SNP [dm3] 2R_10190934_SNP [dm6]	C	A	9.925e^-5	0.389	INTRON KCNQ
2L	15553743	2L_15553743_SNP [dm3] 2L_15553743_SNP [dm6]	A	C	9.969e^-5	0.389	INTRON kek3
3L	4865262	3L_4865262_DEL [dm3] 3L_4865262_DEL [dm6]	TT	T	9.987e^-5	0.389	DOWNSTREAM CG17150 INTRON CG17150	TF binding site mE1_TFBS_inv
2L	15636773	2L_15636773_SNP [dm3] 2L_15636773_SNP [dm6]	T	A	1.001e^-4	0.389	INTERGENIC
2R	16829576	2R_16829576_SNP [dm3] 2R_20942071_SNP [dm6]	T	A	1.003e^-4	0.389	INTERGENIC
2L	9615877	2L_9615877_SNP [dm3] 2L_9615877_SNP [dm6]	C	T	1.008e^-4	0.389	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S
2R	18865921	2R_18865921_SNP [dm3] 2R_22978398_SNP [dm6]	A	T	1.009e^-4	0.389	INTERGENIC
2L	13730750	2L_13730750_SNP [dm3] 2L_13730750_SNP [dm6]	A	T	1.010e^-4	0.389	INTERGENIC
3L	6844527	3L_6844527_SNP [dm3] 3L_6851427_SNP [dm6]	G	C	1.011e^-4	0.389	INTERGENIC
2L	15735004	2L_15735004_SNP [dm3] 2L_15735004_SNP [dm6]	A	T	1.011e^-4	0.389	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	1435411	2R_1435411_SNP [dm3] 2R_5547906_SNP [dm6]	A	T	1.012e^-4	0.389	SYNONYMOUS_CODING CG30438
3R	13667644	3R_13667644_SNP [dm3] 3R_17841922_SNP [dm6]	G	A	1.014e^-4	0.389	INTRON tinc
3L	22158157	3L_22158157_SNP [dm3] 3L_22165057_SNP [dm6]	G	A	1.014e^-4	0.389	INTRON olf413	TF binding site mE1_TFBS_Kr
3R	10334115	3R_10334115_SNP [dm3] 3R_14508393_SNP [dm6]	T	A	1.015e^-4	0.389	DOWNSTREAM HtrA2 EXON CR44177
2R	3610671	2R_3610671_SNP [dm3] 2R_7723166_SNP [dm6]	G	T	1.017e^-4	0.389	UPSTREAM CG18812 INTRON CG18812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18737385	2R_18737385_SNP [dm3] 2R_22849862_SNP [dm6]	T	C	1.018e^-4	0.389	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
X	8295184	X_8295184_SNP [dm3] X_8401151_SNP [dm6]	A	G	1.024e^-4	0.389	SYNONYMOUS_CODING CG10555	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3012949	3L_3012949_SNP [dm3] 3L_3012949_SNP [dm6]	T	C	1.024e^-4	0.389	INTERGENIC
3L	6844516	3L_6844516_INS [dm3] 3L_6851416_INS [dm6]	A	AGAA	1.025e^-4	0.389	INTERGENIC
2L	20401973	2L_20401973_SNP [dm3] 2L_20401973_SNP [dm6]	G	T	1.029e^-4	0.389	INTRON CG10947
2L	2961740	2L_2961740_SNP [dm3] 2L_2961740_SNP [dm6]	A	C	1.036e^-4	0.389	SPLICE_SITE_REGION Rbp9 SYNONYMOUS_CODING Rbp9
2R	3468794	2R_3468794_SNP [dm3] 2R_7581289_SNP [dm6]	A	G	1.044e^-4	0.389	NON_SYNONYMOUS_CODING blow DOWNSTREAM Vps13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	1.048e^-4	0.389	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3367239	3L_3367239_SNP [dm3] 3L_3367239_SNP [dm6]	T	A	1.049e^-4	0.389	INTRON kst	TF binding site mE1_TFBS_cad
3L	22594460	3L_22594460_SNP [dm3] 3L_22601360_SNP [dm6]	A	G	1.050e^-4	0.389	INTRON CG14459
X	16133018	X_16133018_SNP [dm3] X_16238985_SNP [dm6]	C	T	1.052e^-4	0.389	INTERGENIC
2L	15464430	2L_15464430_SNP [dm3] 2L_15464430_SNP [dm6]	A	G	1.053e^-4	0.389	DOWNSTREAM CR44863 INTERGENIC
X	16432187	X_16432187_DEL [dm3] X_16538154_DEL [dm6]	TGTTCAATAGGTCCCAATA...	T	1.053e^-4	0.389	DOWNSTREAM CG9903 INTERGENIC
2R	3345322	2R_3345322_SNP [dm3] 2R_7457817_SNP [dm6]	T	C	1.054e^-4	0.389	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16885448	X_16885448_SNP [dm3] X_16991415_SNP [dm6]	T	C	1.056e^-4	0.389	INTRON CG45002
3R	26757562	3R_26757562_SNP [dm3] 3R_30931840_SNP [dm6]	A	G	1.057e^-4	0.389	INTERGENIC
X	20855709	X_20855709_SNP [dm3] X_20984682_SNP [dm6]	C	T	1.058e^-4	0.389	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13947093	2R_13947093_SNP [dm3] 2R_18059588_SNP [dm6]	G	A	1.060e^-4	0.389	UPSTREAM CR45314 INTERGENIC
X	16881667	X_16881667_SNP [dm3] X_16987634_SNP [dm6]	T	G	1.061e^-4	0.389	UPSTREAM CG45002 INTRON CG45002
3R	5410538	3R_5410538_SNP [dm3] 3R_9584816_SNP [dm6]	A	T	1.063e^-4	0.389	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5114095	3R_5114095_SNP [dm3] 3R_9288373_SNP [dm6]	C	T	1.064e^-4	0.389	INTERGENIC
X	21849051	X_21849051_SNP [dm3] X_22447215_SNP [dm6]	T	A	1.064e^-4	0.389	UTR_3_PRIME CG14621 & 1 other DOWNSTREAM CG14615 & 1 other
2L	12844256	2L_12844256_SNP [dm3] 2L_12844256_SNP [dm6]	A	G	1.066e^-4	0.389	INTERGENIC
2R	2944712	2R_2944712_SNP [dm3] 2R_7057207_SNP [dm6]	A	C	1.067e^-4	0.389	DOWNSTREAM Tsp42Eo & 1 other INTRON Tsp42Ep	TF binding site mE1_TFBS_chinmo
2L	9354373	2L_9354373_SNP [dm3] 2L_9354373_SNP [dm6]	T	A	1.068e^-4	0.389	INTERGENIC
3L	2034098	3L_2034098_SNP [dm3] 3L_2034098_SNP [dm6]	T	A	1.068e^-4	0.389	INTERGENIC
2L	15457689	2L_15457689_SNP [dm3] 2L_15457689_SNP [dm6]	T	C	1.068e^-4	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13259383	3L_13259383_SNP [dm3] 3L_13266283_SNP [dm6]	C	T	1.072e^-4	0.389	INTRON caps
2L	16180619	2L_16180619_SNP [dm3] 2L_16180619_SNP [dm6]	G	A	1.072e^-4	0.389	INTRON Ca-alpha1D
3R	10350895	3R_10350895_INS [dm3] 3R_14525173_INS [dm6]	G	GAGTTG	1.073e^-4	0.389	INTRON Pde6
X	21845731	X_21845731_SNP [dm3] X_22443895_SNP [dm6]	T	A	1.074e^-4	0.389	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	14523254	3R_14523254_SNP [dm3] 3R_18697532_SNP [dm6]	A	T	1.076e^-4	0.389	INTERGENIC
3L	7479642	3L_7479642_SNP [dm3] 3L_7486542_SNP [dm6]	A	T	1.077e^-4	0.389	NON_SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_sens
3R	6497431	3R_6497431_SNP [dm3] 3R_10671709_SNP [dm6]	C	T	1.077e^-4	0.389	INTERGENIC	TF binding site mE1_TFBS_sens
2L	20401950	2L_20401950_SNP [dm3] 2L_20401950_SNP [dm6]	T	A	1.079e^-4	0.389	INTRON CG10947
2L	9354342	2L_9354342_SNP [dm3] 2L_9354342_SNP [dm6]	A	G	1.084e^-4	0.389	INTERGENIC
3L	4865339	3L_4865339_DEL [dm3] 3L_4865339_DEL [dm6]	AT	A	1.084e^-4	0.389	DOWNSTREAM CG17150 INTRON CG17150	TF binding site mE1_TFBS_inv
3R	12526260	3R_12526260_SNP [dm3] 3R_16700538_SNP [dm6]	A	G	1.089e^-4	0.389	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9506827	2R_9506827_SNP [dm3] 2R_13619322_SNP [dm6]	T	C	1.091e^-4	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18334449	3L_18334449_SNP [dm3] 3L_18341349_SNP [dm6]	A	G	1.091e^-4	0.389	INTERGENIC
2L	19675632	2L_19675632_SNP [dm3] 2L_19675632_SNP [dm6]	C	T	1.093e^-4	0.389	INTRON Lar
X	21233167	X_21233167_SNP [dm3] X_21362140_SNP [dm6]	G	T	1.096e^-4	0.389	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC
2L	4767845	2L_4767845_SNP [dm3] 2L_4767845_SNP [dm6]	T	G	1.096e^-4	0.389	INTRON CG15630
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	1.098e^-4	0.389	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2L	13248712	2L_13248712_SNP [dm3] 2L_13248712_SNP [dm6]	A	T	1.099e^-4	0.389	INTRON CG16820
X	6176249	X_6176249_INS [dm3] X_6282216_INS [dm6]	A	AGGTATA	1.101e^-4	0.389	UTR_3_PRIME CG11700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19938870	2R_19938870_SNP [dm3] 2R_24051347_SNP [dm6]	C	A	1.101e^-4	0.389	INTRON sei
X	9205252	X_9205252_SNP [dm3] X_9311219_SNP [dm6]	C	T	1.105e^-4	0.389	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13428459	2R_13428459_SNP [dm3] 2R_17540954_SNP [dm6]	C	A	1.106e^-4	0.389	SYNONYMOUS_CODING CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1573840	3L_1573840_SNP [dm3] 3L_1573840_SNP [dm6]	T	G	1.108e^-4	0.389	INTRON CG12004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23488833	3R_23488833_SNP [dm3] 3R_27663111_SNP [dm6]	C	G	1.109e^-4	0.389	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	17130408	X_17130408_SNP [dm3] X_17236375_SNP [dm6]	G	A	1.112e^-4	0.389	INTRON f
2L	3165595	2L_3165595_SNP [dm3] 2L_3165595_SNP [dm6]	G	A	1.113e^-4	0.389	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15733303	2L_15733303_SNP [dm3] 2L_15733303_SNP [dm6]	C	A	1.125e^-4	0.391	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13278941	2L_13278941_SNP [dm3] 2L_13278941_SNP [dm6]	A	G	1.125e^-4	0.391	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10270565	X_10270565_SNP [dm3] X_10376532_SNP [dm6]	C	T	1.127e^-4	0.391	SYNONYMOUS_CODING CG2898 DOWNSTREAM CG32681 INTRON CG17841	TF binding site mE1_TFBS_chinmo
2L	14570706	2L_14570706_SNP [dm3] 2L_14570706_SNP [dm6]	C	A	1.129e^-4	0.391	INTERGENIC
2L	15100013	2L_15100013_SNP [dm3] 2L_15100013_SNP [dm6]	C	T	1.131e^-4	0.391	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4483709	3L_4483709_SNP [dm3] 3L_4483709_SNP [dm6]	C	A	1.136e^-4	0.391	SYNONYMOUS_CODING CG11350
3L	9921981	3L_9921981_SNP [dm3] 3L_9928881_SNP [dm6]	G	A	1.136e^-4	0.391	INTRON CG34356
3L	8876133	3L_8876133_SNP [dm3] 3L_8883033_SNP [dm6]	A	G	1.137e^-4	0.391	INTRON dally
X	21817269	X_21817269_SNP [dm3] X_22415434_SNP [dm6]	T	A	1.142e^-4	0.392	INTERGENIC	transposable element FlyBase
3R	10349741	3R_10349741_SNP [dm3] 3R_14524019_SNP [dm6]	G	A	1.146e^-4	0.393	DOWNSTREAM Cyp313a1 INTRON Pde6
X	17048292	X_17048292_SNP [dm3] X_17154259_SNP [dm6]	T	G	1.147e^-4	0.393	UTR_3_PRIME xmas-2 INTRON xmas-1
X	19301739	X_19301739_INS [dm3] X_19407706_INS [dm6]	C	CAGAAACAGAAGC...	1.150e^-4	0.393	INTRON kek5
X	14061880	X_14061880_SNP [dm3] X_14167847_SNP [dm6]	G	T	1.156e^-4	0.394	INTERGENIC
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.159e^-4	0.394	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	15733128	2L_15733128_SNP [dm3] 2L_15733128_SNP [dm6]	G	A	1.159e^-4	0.394	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5410281	2L_5410281_SNP [dm3] 2L_5410281_SNP [dm6]	G	A	1.165e^-4	0.394	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8272216	2L_8272216_SNP [dm3] 2L_8272216_SNP [dm6]	C	G	1.165e^-4	0.394	UTR_5_PRIME Btk29A INTRON Btk29A
2R	3798728	2R_3798728_SNP [dm3] 2R_7911223_SNP [dm6]	T	C	1.173e^-4	0.394	INTRON CG30377
3R	10325678	3R_10325678_SNP [dm3] 3R_14499956_SNP [dm6]	G	C	1.174e^-4	0.394	INTRON CR44177	TF binding site mE1_TFBS_chinmo
3R	17198612	3R_17198612_SNP [dm3] 3R_21372890_SNP [dm6]	G	A	1.180e^-4	0.394	SYNONYMOUS_CODING mod_mdg4_ INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21570422	3R_21570422_SNP [dm3] 3R_25744700_SNP [dm6]	G	A	1.182e^-4	0.394	SYNONYMOUS_CODING LpR1
3R	8560101	3R_8560101_SNP [dm3] 3R_12734379_SNP [dm6]	G	A	1.185e^-4	0.394	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5165236	2R_5165236_SNP [dm3] 2R_9277731_SNP [dm6]	T	G	1.187e^-4	0.394	INTRON Pkn
2L	10352367	2L_10352367_SNP [dm3] 2L_10352367_SNP [dm6]	A	C	1.188e^-4	0.394	UPSTREAM CG34367 INTRON CG34367
2L	12703911	2L_12703911_SNP [dm3] 2L_12703911_SNP [dm6]	A	C	1.188e^-4	0.394	SYNONYMOUS_CODING CG5776 UPSTREAM spict	TF binding site mE1_TFBS_sens
X	6834626	X_6834626_SNP [dm3] X_6940593_SNP [dm6]	C	T	1.189e^-4	0.394	INTRON CG14431
2L	15556796	2L_15556796_SNP [dm3] 2L_15556796_SNP [dm6]	G	A	1.191e^-4	0.394	INTRON kek3	TF binding site mE1_TFBS_HSA
X	4606149	X_4606149_SNP [dm3] X_4712116_SNP [dm6]	A	T	1.194e^-4	0.394	INTRON Proc-R
X	12442581	X_12442581_SNP [dm3] X_12548548_SNP [dm6]	C	G	1.194e^-4	0.394	INTRON CG43921
X	14062001	X_14062001_SNP [dm3] X_14167968_SNP [dm6]	A	T	1.194e^-4	0.394	INTERGENIC
2L	2552683	2L_2552683_SNP [dm3] 2L_2552683_SNP [dm6]	G	A	1.194e^-4	0.394	SYNONYMOUS_CODING CG3515
3L	22599785	3L_22599785_SNP [dm3] 3L_22606685_SNP [dm6]	A	G	1.200e^-4	0.395	NON_SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15735038	2L_15735038_SNP [dm3] 2L_15735038_SNP [dm6]	A	T	1.206e^-4	0.396	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	11709196	2L_11709196_SNP [dm3] 2L_11709196_SNP [dm6]	T	G	1.213e^-4	0.396	INTERGENIC
3R	12526389	3R_12526389_SNP [dm3] 3R_16700667_SNP [dm6]	A	T	1.215e^-4	0.396	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9439249	2L_9439249_SNP [dm3] 2L_9439249_SNP [dm6]	C	A	1.217e^-4	0.396	DOWNSTREAM CG33723 INTRON numb
X	17449288	X_17449288_SNP [dm3] X_17555255_SNP [dm6]	C	G	1.219e^-4	0.396	INTRON CG43658
2L	3262350	2L_3262350_SNP [dm3] 2L_3262350_SNP [dm6]	C	T	1.220e^-4	0.396	UPSTREAM CR45338 INTERGENIC
2R	3116748	2R_3116748_SNP [dm3] 2R_7229243_SNP [dm6]	C	G	1.221e^-4	0.396	INTERGENIC
2L	4382592	2L_4382592_SNP [dm3] 2L_4382592_SNP [dm6]	G	C	1.223e^-4	0.396	SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	17942007	2R_17942007_SNP [dm3] 2R_22054502_SNP [dm6]	G	T	1.224e^-4	0.396	INTERGENIC
3R	5028787	3R_5028787_SNP [dm3] 3R_9203065_SNP [dm6]	A	C	1.225e^-4	0.396	INTRON pum
3R	17199224	3R_17199224_SNP [dm3] 3R_21373502_SNP [dm6]	C	A	1.229e^-4	0.396	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	17403950	3R_17403950_SNP [dm3] 3R_21578228_SNP [dm6]	A	G	1.229e^-4	0.396	SYNONYMOUS_CODING InR
2L	11181284	2L_11181284_SNP [dm3] 2L_11181284_SNP [dm6]	A	C	1.230e^-4	0.396	DOWNSTREAM CG4788 INTRON Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18620206	X_18620206_SNP [dm3] X_18726173_SNP [dm6]	A	G	1.238e^-4	0.397	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9352132	2L_9352132_SNP [dm3] 2L_9352132_SNP [dm6]	A	T	1.238e^-4	0.397	INTERGENIC
X	6086886	X_6086886_DEL [dm3] X_6192853_DEL [dm6]	CTACATCATAAAATAGTTAT...	C	1.243e^-4	0.397	UPSTREAM Ca-alpha1T INTERGENIC
2L	2941264	2L_2941264_SNP [dm3] 2L_2941264_SNP [dm6]	G	T	1.245e^-4	0.397	INTRON lilli
2L	14570653	2L_14570653_SNP [dm3] 2L_14570653_SNP [dm6]	A	T	1.245e^-4	0.397	INTERGENIC
3L	18496057	3L_18496057_SNP [dm3] 3L_18502957_SNP [dm6]	G	A	1.248e^-4	0.397	UPSTREAM AstC-R2 INTERGENIC
2R	13917650	2R_13917650_SNP [dm3] 2R_18030145_SNP [dm6]	T	C	1.249e^-4	0.397	INTERGENIC
2L	20801743	2L_20801743_SNP [dm3] 2L_20801743_SNP [dm6]	A	T	1.250e^-4	0.397	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	19537348	3L_19537348_SNP [dm3] 3L_19544248_SNP [dm6]	T	C	1.255e^-4	0.398	UPSTREAM Rcd7 & 1 other DOWNSTREAM l_3_76BDr & 1 other INTERGENIC
3R	8615668	3R_8615668_SNP [dm3] 3R_12789946_SNP [dm6]	T	G	1.256e^-4	0.398	INTERGENIC
3L	18481086	3L_18481086_SNP [dm3] 3L_18487986_SNP [dm6]	C	A	1.257e^-4	0.398	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
3R	19468793	3R_19468793_SNP [dm3] 3R_23643071_SNP [dm6]	A	G	1.268e^-4	0.398	INTRON CG31145
3R	10326657	3R_10326657_SNP [dm3] 3R_14500935_SNP [dm6]	G	T	1.268e^-4	0.398	INTRON CR44177
X	18922964	X_18922964_SNP [dm3] X_19028931_SNP [dm6]	A	T	1.271e^-4	0.398	DOWNSTREAM CG43759 INTERGENIC
X	14060789	X_14060789_SNP [dm3] X_14166756_SNP [dm6]	C	T	1.272e^-4	0.398	INTERGENIC
X	14061116	X_14061116_SNP [dm3] X_14167083_SNP [dm6]	T	G	1.272e^-4	0.398	INTERGENIC
2L	17605493	2L_17605493_SNP [dm3] 2L_17605493_SNP [dm6]	G	T	1.276e^-4	0.398	DOWNSTREAM CR44412 INTERGENIC
3R	22189166	3R_22189166_SNP [dm3] 3R_26363444_SNP [dm6]	T	C	1.278e^-4	0.398	DOWNSTREAM CG33970 INTERGENIC
2R	11295737	2R_11295737_SNP [dm3] 2R_15408232_SNP [dm6]	C	A	1.279e^-4	0.398	UPSTREAM Mtk INTRON CG43729
3L	22141248	3L_22141248_SNP [dm3] 3L_22148148_SNP [dm6]	A	G	1.281e^-4	0.398	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	16557535	X_16557535_SNP [dm3] X_16663502_SNP [dm6]	A	C	1.283e^-4	0.398	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
X	9628101	X_9628101_SNP [dm3] X_9734068_SNP [dm6]	A	G	1.288e^-4	0.398	INTRON Sp1	TF binding site mE1_TFBS_cnc
2L	7787598	2L_7787598_SNP [dm3] 2L_7787598_SNP [dm6]	G	T	1.290e^-4	0.398	INTRON CG7149
2L	13483974	2L_13483974_SNP [dm3] 2L_13483974_SNP [dm6]	T	C	1.291e^-4	0.398	UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_cad
3L	8568158	3L_8568158_SNP [dm3] 3L_8575058_SNP [dm6]	C	T	1.294e^-4	0.398	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8568188	3L_8568188_SNP [dm3] 3L_8575088_SNP [dm6]	C	T	1.294e^-4	0.398	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17195296	3R_17195296_SNP [dm3] 3R_21369574_SNP [dm6]	T	C	1.294e^-4	0.398	SYNONYMOUS_CODING pre-mod_mdg4_-U DOWNSTREAM mod_mdg4_ & 2 others INTRON mod_mdg4_
3L	5734377	3L_5734377_SNP [dm3] 3L_5741277_SNP [dm6]	G	A	1.298e^-4	0.398	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2598403	X_2598403_SNP [dm3] X_2704370_SNP [dm6]	C	T	1.300e^-4	0.398	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	19679145	2L_19679145_SNP [dm3] 2L_19679145_SNP [dm6]	A	C	1.301e^-4	0.398	INTRON Lar
3R	6574639	3R_6574639_SNP [dm3] 3R_10748917_SNP [dm6]	C	T	1.302e^-4	0.398	INTRON TkR86C
2R	4114003	2R_4114003_SNP [dm3] 2R_8226498_SNP [dm6]	G	A	1.303e^-4	0.398	DOWNSTREAM LRP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1537330	2L_1537330_SNP [dm3] 2L_1537330_SNP [dm6]	T	A	1.307e^-4	0.398	INTERGENIC
3L	3090763	3L_3090763_SNP [dm3] 3L_3090763_SNP [dm6]	T	C	1.311e^-4	0.398	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10570679	2R_10570679_SNP [dm3] 2R_14683174_SNP [dm6]	T	A	1.311e^-4	0.398	INTRON mspo
X	6375759	X_6375759_SNP [dm3] X_6481726_SNP [dm6]	T	G	1.312e^-4	0.398	INTRON CG42340
3L	9297166	3L_9297166_SNP [dm3] 3L_9304066_SNP [dm6]	T	C	1.314e^-4	0.398	INTERGENIC
2L	13486589	2L_13486589_SNP [dm3] 2L_13486589_SNP [dm6]	T	C	1.317e^-4	0.398	INTRON CG42784
3R	10351632	3R_10351632_SNP [dm3] 3R_14525910_SNP [dm6]	G	A	1.317e^-4	0.398	INTRON Pde6
2L	12254897	2L_12254897_DEL [dm3] 2L_12254897_DEL [dm6]	AA	A	1.326e^-4	0.4	INTRON aret
X	5021506	X_5021506_SNP [dm3] X_5127473_SNP [dm6]	G	T	1.329e^-4	0.4	INTRON rg & 1 other
X	12854846	X_12854846_SNP [dm3] X_12960813_SNP [dm6]	A	C	1.335e^-4	0.401	DOWNSTREAM CG32642 INTERGENIC
3L	11022057	3L_11022057_SNP [dm3] 3L_11028957_SNP [dm6]	T	C	1.341e^-4	0.402	SYNONYMOUS_CODING CG32081
2L	15454552	2L_15454552_SNP [dm3] 2L_15454552_SNP [dm6]	A	G	1.342e^-4	0.402	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8816271	3L_8816271_SNP [dm3] 3L_8823171_SNP [dm6]	C	T	1.344e^-4	0.402	INTERGENIC
2L	9632090	2L_9632090_SNP [dm3] 2L_9632090_SNP [dm6]	A	T	1.347e^-4	0.402	INTERGENIC
2L	12844005	2L_12844005_SNP [dm3] 2L_12844005_SNP [dm6]	A	T	1.350e^-4	0.402	INTERGENIC
2L	18290177	2L_18290177_SNP [dm3] 2L_18290177_SNP [dm6]	C	G	1.350e^-4	0.402	DOWNSTREAM CR44696 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2L	9618838	2L_9618838_SNP [dm3] 2L_9618838_SNP [dm6]	A	C	1.355e^-4	0.402	INTRON GlcAT-S
2R	5543551	2R_5543551_SNP [dm3] 2R_9656046_SNP [dm6]	T	C	1.356e^-4	0.402	INTRON Mmp2
X	9854903	X_9854903_SNP [dm3] X_9960870_SNP [dm6]	A	G	1.361e^-4	0.402	INTERGENIC
3L	11644286	3L_11644286_SNP [dm3] 3L_11651186_SNP [dm6]	G	T	1.362e^-4	0.402	SYNONYMOUS_CODING CG32085 DOWNSTREAM CG7339
3R	22346051	3R_22346051_SNP [dm3] 3R_26520329_SNP [dm6]	T	C	1.364e^-4	0.402	INTRON plum EXON CR45226
X	16024227	X_16024227_SNP [dm3] X_16130194_SNP [dm6]	C	T	1.364e^-4	0.402	INTRON disco-r
2L	15760188	2L_15760188_SNP [dm3] 2L_15760188_SNP [dm6]	G	T	1.372e^-4	0.404	INTRON Gli
2L	13695737	2L_13695737_SNP [dm3] 2L_13695737_SNP [dm6]	G	A	1.374e^-4	0.404	INTRON CG31814
2R	5833273	2R_5833273_SNP [dm3] 2R_9945768_SNP [dm6]	G	A	1.387e^-4	0.405	INTRON Mef2
X	16881695	X_16881695_SNP [dm3] X_16987662_SNP [dm6]	T	A	1.388e^-4	0.405	UPSTREAM CG45002 INTRON CG45002
3L	13188177	3L_13188177_SNP [dm3] 3L_13195077_SNP [dm6]	T	G	1.389e^-4	0.405	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4865304	3L_4865304_SNP [dm3] 3L_4865304_SNP [dm6]	T	A	1.390e^-4	0.405	DOWNSTREAM CG17150 INTRON CG17150	TF binding site mE1_TFBS_inv
3L	18478885	3L_18478885_SNP [dm3] 3L_18485785_SNP [dm6]	C	T	1.391e^-4	0.405	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	22150095	2L_22150095_SNP [dm3] 2L_22150095_SNP [dm6]	T	A	1.392e^-4	0.405	INTRON CG42748	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	10531601	2L_10531601_SNP [dm3] 2L_10531601_SNP [dm6]	T	G	1.392e^-4	0.405	UTR_3_PRIME Lip4 UPSTREAM CG18301 DOWNSTREAM Lip4
2L	10286661	2L_10286661_SNP [dm3] 2L_10286661_SNP [dm6]	A	G	1.405e^-4	0.407	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6080289	2R_6080289_SNP [dm3] 2R_10192784_SNP [dm6]	G	T	1.405e^-4	0.407	UPSTREAM KCNQ INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15265371	X_15265371_SNP [dm3] X_15371338_SNP [dm6]	A	T	1.406e^-4	0.407	INTRON acj6
2L	10968066	2L_10968066_SNP [dm3] 2L_10968066_SNP [dm6]	T	A	1.411e^-4	0.408	START_GAINED CG33129 UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12825570	2R_12825570_DEL [dm3] 2R_16938065_DEL [dm6]	AA	A	1.412e^-4	0.408	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
X	18918479	X_18918479_SNP [dm3] X_19024446_SNP [dm6]	C	A	1.429e^-4	0.412	INTRON CG43759
X	11340982	X_11340982_SNP [dm3] X_11446949_SNP [dm6]	C	T	1.431e^-4	0.412	DOWNSTREAM Sk1 INTRON Evi5	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	15464446	2L_15464446_SNP [dm3] 2L_15464446_SNP [dm6]	A	T	1.436e^-4	0.412	DOWNSTREAM CR44863 INTERGENIC
2L	9354298	2L_9354298_SNP [dm3] 2L_9354298_SNP [dm6]	G	A	1.437e^-4	0.412	INTERGENIC
3R	15519996	3R_15519996_SNP [dm3] 3R_19694274_SNP [dm6]	C	T	1.440e^-4	0.412	INTRON Naam
2L	13479206	2L_13479206_SNP [dm3] 2L_13479206_SNP [dm6]	C	T	1.444e^-4	0.412	INTRON CG42784
3R	20949572	3R_20949572_SNP [dm3] 3R_25123850_SNP [dm6]	A	G	1.453e^-4	0.412	SYNONYMOUS_CODING vig2 UPSTREAM CG31510 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9619172	2L_9619172_SNP [dm3] 2L_9619172_SNP [dm6]	T	C	1.453e^-4	0.412	INTRON GlcAT-S
3L	1112485	3L_1112485_SNP [dm3] 3L_1112485_SNP [dm6]	A	T	1.455e^-4	0.412	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	3478709	X_3478709_SNP [dm3] X_3584676_SNP [dm6]	A	T	1.455e^-4	0.412	INTRON AstA-R1
3L	9967844	3L_9967844_INS [dm3] 3L_9974744_INS [dm6]	A	AA	1.455e^-4	0.412	UTR_5_PRIME dpr6 DOWNSTREAM vnc & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17943	2R_17943_SNP [dm3] 2R_4130438_SNP [dm6]	C	G	1.458e^-4	0.412	UPSTREAM CG17683 INTERGENIC
3R	19576474	3R_19576474_SNP [dm3] 3R_23750752_SNP [dm6]	C	T	1.460e^-4	0.412	UTR_3_PRIME Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
3L	22575606	3L_22575606_SNP [dm3] 3L_22582506_SNP [dm6]	A	G	1.460e^-4	0.412	UTR_3_PRIME CG14459
X	21848169	X_21848169_SNP [dm3] X_22446333_SNP [dm6]	G	T	1.462e^-4	0.412	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1112505	3L_1112505_DEL [dm3] 3L_1112505_DEL [dm6]	CTAAA	C	1.462e^-4	0.412	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22144761	3L_22144761_SNP [dm3] 3L_22151661_SNP [dm6]	C	A	1.466e^-4	0.412	INTRON olf413
3R	3297357	3R_3297357_SNP [dm3] 3R_7471635_SNP [dm6]	G	A	1.467e^-4	0.412	DOWNSTREAM tRNA:V3b:84Dc & 1 other INTERGENIC	transposable element FlyBase
3L	18717459	3L_18717459_SNP [dm3] 3L_18724359_SNP [dm6]	A	C	1.470e^-4	0.412	DOWNSTREAM CR43985 INTERGENIC
3L	8273681	3L_8273681_SNP [dm3] 3L_8280581_SNP [dm6]	A	G	1.474e^-4	0.412	SYNONYMOUS_CODING Dscam4
2L	5634626	2L_5634626_SNP [dm3] 2L_5634626_SNP [dm6]	G	A	1.475e^-4	0.412	INTRON CG31646	TF binding site BDTNP1_TFBS_hb
2L	4285582	2L_4285582_SNP [dm3] 2L_4285582_SNP [dm6]	T	C	1.477e^-4	0.412	INTRON tutl	TF binding site BDTNP1_TFBS_dl
X	21845564	X_21845564_SNP [dm3] X_22443728_SNP [dm6]	A	T	1.480e^-4	0.412	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14581209	3L_14581209_SNP [dm3] 3L_14588109_SNP [dm6]	C	T	1.481e^-4	0.412	INTRON HGTX	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19937743	3L_19937743_DEL [dm3] 3L_19944643_DEL [dm6]	AAAAT	A	1.484e^-4	0.412	INTRON Ac76E
2R	18001191	2R_18001191_SNP [dm3] 2R_22113686_SNP [dm6]	A	T	1.491e^-4	0.413	UPSTREAM Vrp1 INTRON Vrp1 & 1 other
3R	15158785	3R_15158785_SNP [dm3] 3R_19333063_SNP [dm6]	T	A	1.491e^-4	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22052593	3R_22052593_SNP [dm3] 3R_26226871_SNP [dm6]	C	G	1.493e^-4	0.413	INTERGENIC
3R	22052601	3R_22052601_SNP [dm3] 3R_26226879_SNP [dm6]	C	G	1.493e^-4	0.413	INTERGENIC
2R	12506542	2R_12506542_SNP [dm3] 2R_16619037_SNP [dm6]	A	C	1.500e^-4	0.414	UTR_5_PRIME CG5065
3R	17333900	3R_17333900_SNP [dm3] 3R_21508178_SNP [dm6]	G	A	1.507e^-4	0.415	INTRON C15
3L	8623978	3L_8623978_SNP [dm3] 3L_8630878_SNP [dm6]	G	A	1.509e^-4	0.415	DOWNSTREAM Cdc6 INTRON Zasp66
3L	18450881	3L_18450881_DEL [dm3] 3L_18457781_DEL [dm6]	GGACTATTA	G	1.514e^-4	0.416	UPSTREAM CR44670 & 1 other INTERGENIC
2L	11896174	2L_11896174_SNP [dm3] 2L_11896174_SNP [dm6]	C	G	1.519e^-4	0.416	INTRON Pde1c
3L	10618361	3L_10618361_SNP [dm3] 3L_10625261_SNP [dm6]	T	C	1.530e^-4	0.419	NON_SYNONYMOUS_CODING CG43127
3R	12526167	3R_12526167_SNP [dm3] 3R_16700445_SNP [dm6]	T	G	1.538e^-4	0.421	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2792890	3L_2792890_SNP [dm3] 3L_2792890_SNP [dm6]	G	C	1.541e^-4	0.421	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5397256	2L_5397256_SNP [dm3] 2L_5397256_SNP [dm6]	T	A	1.550e^-4	0.422	INTERGENIC
2R	2989464	2R_2989464_SNP [dm3] 2R_7101959_SNP [dm6]	G	C	1.557e^-4	0.422	INTRON esn
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	1.558e^-4	0.422	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	18918482	X_18918482_SNP [dm3] X_19024449_SNP [dm6]	A	T	1.559e^-4	0.422	INTRON CG43759
2L	15762074	2L_15762074_SNP [dm3] 2L_15762074_SNP [dm6]	G	A	1.559e^-4	0.422	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11926150	2L_11926150_SNP [dm3] 2L_11926150_SNP [dm6]	T	A	1.561e^-4	0.422	INTRON Pde1c
3R	8552792	3R_8552792_SNP [dm3] 3R_12727070_SNP [dm6]	G	A	1.563e^-4	0.422	UPSTREAM CR44231 INTERGENIC
3R	14523213	3R_14523213_SNP [dm3] 3R_18697491_SNP [dm6]	T	C	1.565e^-4	0.422	INTERGENIC
3L	10594521	3L_10594521_SNP [dm3] 3L_10601421_SNP [dm6]	T	G	1.570e^-4	0.422	INTERGENIC
2L	20398783	2L_20398783_SNP [dm3] 2L_20398783_SNP [dm6]	G	A	1.571e^-4	0.422	INTRON CG10947
2L	18946595	2L_18946595_SNP [dm3] 2L_18946595_SNP [dm6]	T	C	1.573e^-4	0.422	DOWNSTREAM CR44740 EXON CR42848	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13880806	3R_13880806_SNP [dm3] 3R_18055084_SNP [dm6]	G	A	1.573e^-4	0.422	INTERGENIC
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	1.577e^-4	0.422	DOWNSTREAM CR45543 INTERGENIC
2L	1071141	2L_1071141_SNP [dm3] 2L_1071141_SNP [dm6]	C	G	1.581e^-4	0.422	INTRON S	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	26757602	3R_26757602_SNP [dm3] 3R_30931880_SNP [dm6]	G	C	1.582e^-4	0.422	INTERGENIC
2L	22312027	2L_22312027_SNP [dm3] 2L_22312027_SNP [dm6]	A	T	1.591e^-4	0.422	UTR_5_PRIME CG17018
X	21844860	X_21844860_INS [dm3] X_22443024_INS [dm6]	A	ATAATTTTT	1.597e^-4	0.422	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20523553	2L_20523553_SNP [dm3] 2L_20523553_SNP [dm6]	A	G	1.598e^-4	0.422	INTERGENIC
2L	7971944	2L_7971944_INS [dm3] 2L_7971944_INS [dm6]	G	GCTGG	1.599e^-4	0.422	INTRON Snoo
3L	10022045	3L_10022045_SNP [dm3] 3L_10028945_SNP [dm6]	C	A	1.601e^-4	0.422	DOWNSTREAM CR45155 INTRON dpr6
2R	15074805	2R_15074805_SNP [dm3] 2R_19187300_SNP [dm6]	G	C	1.601e^-4	0.422	INTRON hppy
2R	3856559	2R_3856559_SNP [dm3] 2R_7969054_SNP [dm6]	A	G	1.603e^-4	0.422	UTR_3_PRIME CG8726 INTRON nito
3R	10351577	3R_10351577_SNP [dm3] 3R_14525855_SNP [dm6]	A	C	1.604e^-4	0.422	INTRON Pde6
3R	25417994	3R_25417994_SNP [dm3] 3R_29592272_SNP [dm6]	A	T	1.605e^-4	0.422	UPSTREAM alph INTRON alph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	24103564	3R_24103564_SNP [dm3] 3R_28277842_SNP [dm6]	A	G	1.605e^-4	0.422	INTERGENIC
X	14061293	X_14061293_SNP [dm3] X_14167260_SNP [dm6]	A	C	1.612e^-4	0.422	INTERGENIC
3R	16774502	3R_16774502_SNP [dm3] 3R_20948780_SNP [dm6]	G	A	1.619e^-4	0.422	UTR_5_PRIME Atpalpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	10618795	3L_10618795_SNP [dm3] 3L_10625695_SNP [dm6]	G	A	1.621e^-4	0.422	UPSTREAM CG34238 & 1 other INTERGENIC
3L	18443911	3L_18443911_SNP [dm3] 3L_18450811_SNP [dm6]	C	A	1.622e^-4	0.422	INTERGENIC
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	1.623e^-4	0.422	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3144130	2R_3144130_SNP [dm3] 2R_7256625_SNP [dm6]	A	G	1.626e^-4	0.422	EXON CR45280
3R	10350881	3R_10350881_SNP [dm3] 3R_14525159_SNP [dm6]	C	G	1.628e^-4	0.422	INTRON Pde6
2L	9115765	2L_9115765_SNP [dm3] 2L_9115765_SNP [dm6]	T	A	1.629e^-4	0.422	INTERGENIC
2R	18770292	2R_18770292_SNP [dm3] 2R_22882769_SNP [dm6]	T	G	1.633e^-4	0.422	UTR_3_PRIME CG3499 UPSTREAM CG3501 DOWNSTREAM CG3499	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6903641	3R_6903641_INS [dm3] 3R_11077919_INS [dm6]	A	AA	1.634e^-4	0.422	INTERGENIC
3L	22622544	3L_22622544_SNP [dm3] 3L_22629444_SNP [dm6]	C	A	1.645e^-4	0.422	INTRON CG14459
3L	1821680	3L_1821680_SNP [dm3] 3L_1821680_SNP [dm6]	T	A	1.649e^-4	0.422	INTRON GV1
2L	11709425	2L_11709425_SNP [dm3] 2L_11709425_SNP [dm6]	A	C	1.650e^-4	0.422	INTERGENIC
3L	1678331	3L_1678331_SNP [dm3] 3L_1678331_SNP [dm6]	T	C	1.651e^-4	0.422	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	1165967	3L_1165967_SNP [dm3] 3L_1165967_SNP [dm6]	A	G	1.654e^-4	0.422	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe
2L	9354915	2L_9354915_SNP [dm3] 2L_9354915_SNP [dm6]	G	A	1.654e^-4	0.422	INTERGENIC
3R	13653556	3R_13653556_SNP [dm3] 3R_17827834_SNP [dm6]	C	T	1.655e^-4	0.422	INTRON tinc	TF binding site mE1_TFBS_cad
2R	9212850	2R_9212850_SNP [dm3] 2R_13325345_SNP [dm6]	A	T	1.659e^-4	0.422	INTERGENIC
2L	17610164	2L_17610164_SNP [dm3] 2L_17610164_SNP [dm6]	T	G	1.661e^-4	0.422	INTERGENIC
2L	9679134	2L_9679134_SNP [dm3] 2L_9679134_SNP [dm6]	G	T	1.662e^-4	0.422	INTERGENIC
2R	19519268	2R_19519268_SNP [dm3] 2R_23631745_SNP [dm6]	G	T	1.666e^-4	0.422	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10264342	3R_10264342_SNP [dm3] 3R_14438620_SNP [dm6]	C	G	1.666e^-4	0.422	INTRON cv-c
X	17050565	X_17050565_SNP [dm3] X_17156532_SNP [dm6]	T	C	1.666e^-4	0.422	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22583362	3L_22583362_SNP [dm3] 3L_22590262_SNP [dm6]	G	A	1.669e^-4	0.422	INTRON CG14459
2R	14639552	2R_14639552_SNP [dm3] 2R_18752047_SNP [dm6]	G	A	1.669e^-4	0.422	SYNONYMOUS_CODING Hs3st-A
2R	10930445	2R_10930445_SNP [dm3] 2R_15042940_SNP [dm6]	T	A	1.672e^-4	0.422	DOWNSTREAM hbs INTERGENIC
2R	284982	2R_284982_MNP [dm3] 2R_4397477_MNP [dm6]	AGAATTT	TCTTAGA	1.672e^-4	0.422	INTRON Gprk1	TF binding site mE1_TFBS_cad
3L	11022087	3L_11022087_SNP [dm3] 3L_11028987_SNP [dm6]	A	G	1.676e^-4	0.422	SYNONYMOUS_CODING CG32081
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	1.678e^-4	0.422	INTRON Dscam4
2R	17812003	2R_17812003_SNP [dm3] 2R_21924498_SNP [dm6]	T	A	1.679e^-4	0.422	INTRON Fili
2R	12550798	2R_12550798_SNP [dm3] 2R_16663293_SNP [dm6]	C	T	1.680e^-4	0.422	INTRON Picot
2L	10968022	2L_10968022_SNP [dm3] 2L_10968022_SNP [dm6]	A	G	1.680e^-4	0.422	UTR_5_PRIME CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9244267	2R_9244267_SNP [dm3] 2R_13356762_SNP [dm6]	C	T	1.681e^-4	0.422	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9337734	X_9337734_SNP [dm3] X_9443701_SNP [dm6]	T	G	1.683e^-4	0.422	INTRON mgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11344782	X_11344782_SNP [dm3] X_11450749_SNP [dm6]	A	G	1.683e^-4	0.422	INTRON Evi5
2L	11531603	2L_11531603_SNP [dm3] 2L_11531603_SNP [dm6]	T	G	1.688e^-4	0.422	UPSTREAM CG34162 & 1 other DOWNSTREAM CR42743 INTERGENIC
2R	9050261	2R_9050261_SNP [dm3] 2R_13162756_SNP [dm6]	A	G	1.693e^-4	0.422	UTR_3_PRIME Nrk DOWNSTREAM CG15870	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13156121	2R_13156121_SNP [dm3] 2R_17268616_SNP [dm6]	T	C	1.694e^-4	0.422	INTRON mbl
2L	4747541	2L_4747541_SNP [dm3] 2L_4747541_SNP [dm6]	A	G	1.698e^-4	0.422	INTRON CG15630
2L	984890	2L_984890_SNP [dm3] 2L_984890_SNP [dm6]	A	G	1.699e^-4	0.422	INTERGENIC
X	18922357	X_18922357_SNP [dm3] X_19028324_SNP [dm6]	A	G	1.704e^-4	0.422	UTR_3_PRIME CG43759	TF binding site BDTNP1_TFBS_dl
X	16885636	X_16885636_SNP [dm3] X_16991603_SNP [dm6]	G	T	1.706e^-4	0.422	INTRON CG45002
3L	10018140	3L_10018140_SNP [dm3] 3L_10025040_SNP [dm6]	T	G	1.709e^-4	0.422	INTRON dpr6
2R	5009410	2R_5009410_SNP [dm3] 2R_9121905_SNP [dm6]	G	T	1.709e^-4	0.422	UTR_3_PRIME Su_var_2-10 UPSTREAM GstE13 DOWNSTREAM Su_var_2-10
2R	5833236	2R_5833236_SNP [dm3] 2R_9945731_SNP [dm6]	A	T	1.716e^-4	0.422	UPSTREAM Mef2 INTRON Mef2
3L	855085	3L_855085_SNP [dm3] 3L_855085_SNP [dm6]	C	T	1.716e^-4	0.422	INTRON dpr20	TF binding site mE1_TFBS_cad
3R	14336585	3R_14336585_SNP [dm3] 3R_18510863_SNP [dm6]	T	A	1.719e^-4	0.422	INTRON fru
2R	8520080	2R_8520080_SNP [dm3] 2R_12632575_SNP [dm6]	A	G	1.721e^-4	0.422	UPSTREAM CG33792 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6844359	3L_6844359_SNP [dm3] 3L_6851259_SNP [dm6]	C	T	1.723e^-4	0.422	INTERGENIC
2L	2595131	2L_2595131_SNP [dm3] 2L_2595131_SNP [dm6]	G	T	1.723e^-4	0.422	INTERGENIC
X	14061292	X_14061292_SNP [dm3] X_14167259_SNP [dm6]	T	C	1.725e^-4	0.422	INTERGENIC
3R	3482644	3R_3482644_SNP [dm3] 3R_7656922_SNP [dm6]	C	T	1.725e^-4	0.422	INTERGENIC
X	9205262	X_9205262_SNP [dm3] X_9311229_SNP [dm6]	G	A	1.725e^-4	0.422	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24104572	3R_24104572_SNP [dm3] 3R_28278850_SNP [dm6]	A	T	1.726e^-4	0.422	INTERGENIC
3L	16633941	3L_16633941_SNP [dm3] 3L_16640841_SNP [dm6]	A	G	1.731e^-4	0.422	INTRON Abl
2L	10892085	2L_10892085_SNP [dm3] 2L_10892085_SNP [dm6]	A	T	1.734e^-4	0.422	INTERGENIC
3R	656966	3R_656966_SNP [dm3] 3R_4831244_SNP [dm6]	C	G	1.734e^-4	0.422	NON_SYNONYMOUS_CODING CG14659 UPSTREAM CG14658	TF binding site mE1_TFBS_cad
X	20858940	X_20858940_INS [dm3] X_20987913_INS [dm6]	C	CTCTCCCC	1.735e^-4	0.422	INTERGENIC
2L	11406427	2L_11406427_SNP [dm3] 2L_11406427_SNP [dm6]	A	C	1.737e^-4	0.422	INTERGENIC	regulatory region REDfly_CRMs
2R	5848673	2R_5848673_SNP [dm3] 2R_9961168_SNP [dm6]	T	G	1.739e^-4	0.422	INTRON Pal1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15221540	3L_15221540_SNP [dm3] 3L_15228440_SNP [dm6]	A	G	1.740e^-4	0.422	INTERGENIC	TF binding site mE1_TFBS_sens
2R	20211203	2R_20211203_SNP [dm3] 2R_24323680_SNP [dm6]	A	C	1.745e^-4	0.422	INTERGENIC
3R	10901940	3R_10901940_SNP [dm3] 3R_15076218_SNP [dm6]	C	G	1.748e^-4	0.422	UTR_5_PRIME dpr9
2L	15541035	2L_15541035_SNP [dm3] 2L_15541035_SNP [dm6]	T	C	1.749e^-4	0.422	INTERGENIC
2L	4894990	2L_4894990_SNP [dm3] 2L_4894990_SNP [dm6]	C	T	1.750e^-4	0.422	INTRON CG3036
3R	17157251	3R_17157251_SNP [dm3] 3R_21331529_SNP [dm6]	A	G	1.752e^-4	0.422	INTRON CG16791
3L	7400036	3L_7400036_SNP [dm3] 3L_7406936_SNP [dm6]	C	T	1.759e^-4	0.424	DOWNSTREAM pncr015:3L INTERGENIC
3L	8623969	3L_8623969_SNP [dm3] 3L_8630869_SNP [dm6]	A	C	1.765e^-4	0.425	DOWNSTREAM Cdc6 INTRON Zasp66
2R	18737409	2R_18737409_SNP [dm3] 2R_22849886_SNP [dm6]	C	T	1.769e^-4	0.425	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
X	9205412	X_9205412_SNP [dm3] X_9311379_SNP [dm6]	T	C	1.772e^-4	0.425	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18498606	3L_18498606_SNP [dm3] 3L_18505506_SNP [dm6]	G	T	1.774e^-4	0.425	INTERGENIC
2R	5833346	2R_5833346_INS [dm3] 2R_9945841_INS [dm6]	A	ACA	1.776e^-4	0.425	INTRON Mef2
2L	13642962	2L_13642962_SNP [dm3] 2L_13642962_SNP [dm6]	G	A	1.779e^-4	0.425	UPSTREAM ics INTRON CR44726
2L	6089588	2L_6089588_SNP [dm3] 2L_6089588_SNP [dm6]	C	T	1.784e^-4	0.425	INTRON Kr-h1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	1748685	2L_1748685_SNP [dm3] 2L_1748685_SNP [dm6]	C	A	1.785e^-4	0.425	INTRON CG17646
X	9205398	X_9205398_INS [dm3] X_9311365_INS [dm6]	G	GTTAAGGCAA	1.791e^-4	0.426	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1821672	3L_1821672_SNP [dm3] 3L_1821672_SNP [dm6]	A	G	1.792e^-4	0.426	INTRON GV1
X	21846360	X_21846360_SNP [dm3] X_22444524_SNP [dm6]	A	G	1.801e^-4	0.428	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
X	13196069	X_13196069_SNP [dm3] X_13302036_SNP [dm6]	G	A	1.806e^-4	0.428	INTRON CG1764
3L	8827325	3L_8827325_SNP [dm3] 3L_8834225_SNP [dm6]	C	G	1.807e^-4	0.428	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Kr
X	18918507	X_18918507_SNP [dm3] X_19024474_SNP [dm6]	T	C	1.812e^-4	0.428	INTRON CG43759
2L	10716164	2L_10716164_SNP [dm3] 2L_10716164_SNP [dm6]	G	T	1.817e^-4	0.428	INTERGENIC
3R	26458201	3R_26458201_SNP [dm3] 3R_30632479_SNP [dm6]	T	G	1.817e^-4	0.428	INTERGENIC
3R	26458206	3R_26458206_SNP [dm3] 3R_30632484_SNP [dm6]	C	T	1.817e^-4	0.428	INTERGENIC
2R	3616118	2R_3616118_SNP [dm3] 2R_7728613_SNP [dm6]	G	C	1.820e^-4	0.428	INTRON CG18812
3L	2034119	3L_2034119_SNP [dm3] 3L_2034119_SNP [dm6]	T	A	1.824e^-4	0.428	INTERGENIC
2R	14603713	2R_14603713_SNP [dm3] 2R_18716208_SNP [dm6]	A	G	1.825e^-4	0.428	INTERGENIC
X	21830618	X_21830618_SNP [dm3] X_22428783_SNP [dm6]	C	G	1.827e^-4	0.428	INTERGENIC	transposable element FlyBase
3L	18481128	3L_18481128_SNP [dm3] 3L_18488028_SNP [dm6]	A	G	1.827e^-4	0.428	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	1.831e^-4	0.428	INTERGENIC
3L	21483082	3L_21483082_SNP [dm3] 3L_21489982_SNP [dm6]	T	G	1.831e^-4	0.428	NON_SYNONYMOUS_CODING Neu2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13656363	3R_13656363_SNP [dm3] 3R_17830641_SNP [dm6]	T	C	1.839e^-4	0.429	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9206857	2R_9206857_SNP [dm3] 2R_13319352_SNP [dm6]	T	C	1.848e^-4	0.429	INTERGENIC
3R	14680617	3R_14680617_SNP [dm3] 3R_18854895_SNP [dm6]	G	A	1.851e^-4	0.429	INTERGENIC
3R	1114860	3R_1114860_SNP [dm3] 3R_5289138_SNP [dm6]	C	T	1.856e^-4	0.429	INTRON mtd
3L	15169356	3L_15169356_SNP [dm3] 3L_15176256_SNP [dm6]	C	G	1.871e^-4	0.429	INTERGENIC
3R	16390108	3R_16390108_SNP [dm3] 3R_20564386_SNP [dm6]	G	A	1.873e^-4	0.429	UPSTREAM CG10877 INTRON CG5191	TF binding site mE1_TFBS_Trl
X	14364609	X_14364609_SNP [dm3] X_14470576_SNP [dm6]	T	A	1.874e^-4	0.429	INTERGENIC
2L	10968953	2L_10968953_SNP [dm3] 2L_10968953_SNP [dm6]	C	T	1.875e^-4	0.429	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2R	1730950	2R_1730950_SNP [dm3] 2R_5843445_SNP [dm6]	A	C	1.881e^-4	0.429	INTRON dpr12
2L	12448636	2L_12448636_SNP [dm3] 2L_12448636_SNP [dm6]	A	G	1.882e^-4	0.429	UTR_5_PRIME Oatp33Eb UPSTREAM CG5421
X	13381631	X_13381631_SNP [dm3] X_13487598_SNP [dm6]	C	T	1.882e^-4	0.429	INTRON Neto
X	9205408	X_9205408_SNP [dm3] X_9311375_SNP [dm6]	C	T	1.884e^-4	0.429	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14570652	2L_14570652_SNP [dm3] 2L_14570652_SNP [dm6]	G	T	1.885e^-4	0.429	INTERGENIC
2L	11200863	2L_11200863_SNP [dm3] 2L_11200863_SNP [dm6]	T	C	1.885e^-4	0.429	INTRON Ca-beta
2L	4407893	2L_4407893_SNP [dm3] 2L_4407893_SNP [dm6]	T	C	1.889e^-4	0.429	SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1573229	2R_1573229_SNP [dm3] 2R_5685724_SNP [dm6]	G	A	1.891e^-4	0.429	INTRON scaf
3R	10351520	3R_10351520_SNP [dm3] 3R_14525798_SNP [dm6]	C	T	1.892e^-4	0.429	INTRON Pde6
2R	17998499	2R_17998499_SNP [dm3] 2R_22110994_SNP [dm6]	C	G	1.896e^-4	0.429	INTRON Vrp1	TF binding site mE1_TFBS_cad
X	7236805	X_7236805_DEL [dm3] X_7342772_DEL [dm6]	AAAATGGTTTTCCTAA...	A	1.898e^-4	0.429	DOWNSTREAM CBP INTRON CR44357 & 1 other
3L	15258274	3L_15258274_SNP [dm3] 3L_15265174_SNP [dm6]	G	T	1.900e^-4	0.429	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1167023	3L_1167023_SNP [dm3] 3L_1167023_SNP [dm6]	T	A	1.903e^-4	0.429	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	16518966	2R_16518966_SNP [dm3] 2R_20631461_SNP [dm6]	A	C	1.903e^-4	0.429	INTRON Rcd6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17204101	3R_17204101_SNP [dm3] 3R_21378379_SNP [dm6]	A	T	1.903e^-4	0.429	UPSTREAM mod_mdg4_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13868893	X_13868893_SNP [dm3] X_13974860_SNP [dm6]	G	T	1.903e^-4	0.429	INTRON mamo
2R	790399	2R_790399_SNP [dm3] 2R_4902894_SNP [dm6]	C	T	1.908e^-4	0.429	INTRON CG44102	transposable element FlyBase
2R	3116749	2R_3116749_SNP [dm3] 2R_7229244_SNP [dm6]	A	G	1.909e^-4	0.429	INTERGENIC
X	15265436	X_15265436_SNP [dm3] X_15371403_SNP [dm6]	T	C	1.917e^-4	0.429	INTRON acj6
3R	10334814	3R_10334814_SNP [dm3] 3R_14509092_SNP [dm6]	G	T	1.920e^-4	0.429	UTR_3_PRIME HtrA2 DOWNSTREAM HtrA2 & 1 other
X	6157028	X_6157028_SNP [dm3] X_6262995_SNP [dm6]	T	C	1.920e^-4	0.429	DOWNSTREAM CG3781 INTRON schlank
2L	11444909	2L_11444909_SNP [dm3] 2L_11444909_SNP [dm6]	T	A	1.927e^-4	0.429	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7633865	3R_7633865_SNP [dm3] 3R_11808143_SNP [dm6]	C	T	1.928e^-4	0.429	INTRON ClC-a
2R	10435876	2R_10435876_SNP [dm3] 2R_14548371_SNP [dm6]	T	C	1.928e^-4	0.429	INTRON ttv
3L	4051406	3L_4051406_SNP [dm3] 3L_4051406_SNP [dm6]	G	T	1.929e^-4	0.429	INTRON CG1136	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5394341	2L_5394341_SNP [dm3] 2L_5394341_SNP [dm6]	A	G	1.930e^-4	0.429	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19950645	2L_19950645_SNP [dm3] 2L_19950645_SNP [dm6]	C	T	1.933e^-4	0.429	INTRON sick
3R	16773329	3R_16773329_SNP [dm3] 3R_20947607_SNP [dm6]	G	A	1.934e^-4	0.429	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	5184261	3R_5184261_SNP [dm3] 3R_9358539_SNP [dm6]	A	T	1.938e^-4	0.429	UTR_3_PRIME CG43675 & 1 other DOWNSTREAM CG43675
3R	20722121	3R_20722121_SNP [dm3] 3R_24896399_SNP [dm6]	C	T	1.943e^-4	0.429	INTRON CG11069
3R	6307902	3R_6307902_SNP [dm3] 3R_10482180_SNP [dm6]	C	T	1.949e^-4	0.429	INTERGENIC
2L	13486811	2L_13486811_SNP [dm3] 2L_13486811_SNP [dm6]	T	A	1.955e^-4	0.429	INTRON CG42784
X	16881892	X_16881892_SNP [dm3] X_16987859_SNP [dm6]	A	G	1.956e^-4	0.429	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10968224	2L_10968224_SNP [dm3] 2L_10968224_SNP [dm6]	G	T	1.959e^-4	0.429	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	6906851	3R_6906851_SNP [dm3] 3R_11081129_SNP [dm6]	G	A	1.960e^-4	0.429	INTERGENIC
2R	13449063	2R_13449063_SNP [dm3] 2R_17561558_SNP [dm6]	G	T	1.962e^-4	0.429	SYNONYMOUS_CODING Klp54D
3R	11580352	3R_11580352_SNP [dm3] 3R_15754630_SNP [dm6]	G	A	1.965e^-4	0.429	INTERGENIC
2L	13248746	2L_13248746_SNP [dm3] 2L_13248746_SNP [dm6]	T	C	1.966e^-4	0.429	INTRON CG16820
2L	9879184	2L_9879184_SNP [dm3] 2L_9879184_SNP [dm6]	T	C	1.968e^-4	0.429	INTRON nAChRalpha6
X	21848080	X_21848080_SNP [dm3] X_22446244_SNP [dm6]	G	T	1.969e^-4	0.429	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11165731	2R_11165731_SNP [dm3] 2R_15278226_SNP [dm6]	G	A	1.970e^-4	0.429	SYNONYMOUS_CODING Trpm
X	17050472	X_17050472_SNP [dm3] X_17156439_SNP [dm6]	T	C	1.971e^-4	0.429	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17999716	2R_17999716_SNP [dm3] 2R_22112211_SNP [dm6]	G	A	1.972e^-4	0.429	SPLICE_SITE_REGION Vrp1 SYNONYMOUS_CODING Vrp1
X	16881655	X_16881655_DEL [dm3] X_16987622_DEL [dm6]	TTTTACGTT	T	1.972e^-4	0.429	UPSTREAM CG45002 INTRON CG45002
2L	15760145	2L_15760145_SNP [dm3] 2L_15760145_SNP [dm6]	C	T	1.972e^-4	0.429	INTRON Gli	TF binding site mE1_TFBS_cad
3L	18503906	3L_18503906_SNP [dm3] 3L_18510806_SNP [dm6]	C	T	1.975e^-4	0.429	INTERGENIC
3R	7760213	3R_7760213_SNP [dm3] 3R_11934491_SNP [dm6]	C	A	1.978e^-4	0.429	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18474992	2L_18474992_SNP [dm3] 2L_18474992_SNP [dm6]	G	A	1.979e^-4	0.429	INTRON CG10283
2R	8520041	2R_8520041_SNP [dm3] 2R_12632536_SNP [dm6]	T	C	1.980e^-4	0.429	UPSTREAM CG33792 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21775757	3L_21775757_SNP [dm3] 3L_21782657_SNP [dm6]	G	A	1.980e^-4	0.429	INTERGENIC
3R	1059802	3R_1059802_SNP [dm3] 3R_5234080_SNP [dm6]	G	C	1.982e^-4	0.429	SYNONYMOUS_CODING Mms19	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17239387	X_17239387_SNP [dm3] X_17345354_SNP [dm6]	T	C	1.983e^-4	0.429	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20568874	3R_20568874_SNP [dm3] 3R_24743152_SNP [dm6]	G	T	1.983e^-4	0.429	INTRON tok
3R	19894789	3R_19894789_SNP [dm3] 3R_24069067_SNP [dm6]	C	T	1.985e^-4	0.429	INTRON 4EHP
3R	17861184	3R_17861184_SNP [dm3] 3R_22035462_SNP [dm6]	A	G	1.988e^-4	0.429	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17861185	3R_17861185_INS [dm3] 3R_22035463_INS [dm6]	A	ATAG	1.988e^-4	0.429	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	20764335	2L_20764335_SNP [dm3] 2L_20764335_SNP [dm6]	C	T	1.990e^-4	0.429	SYNONYMOUS_CODING dia	TF binding site mE1_TFBS_sens
2L	11444963	2L_11444963_SNP [dm3] 2L_11444963_SNP [dm6]	C	A	1.991e^-4	0.429	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10360763	3R_10360763_SNP [dm3] 3R_14535041_SNP [dm6]	C	G	1.993e^-4	0.429	INTRON Pde6
3L	15221537	3L_15221537_SNP [dm3] 3L_15228437_SNP [dm6]	T	A	1.996e^-4	0.429	INTERGENIC	TF binding site mE1_TFBS_sens
2R	13425802	2R_13425802_SNP [dm3] 2R_17538297_SNP [dm6]	A	G	2.001e^-4	0.429	SYNONYMOUS_CODING eIF3-S9	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16773576	3R_16773576_SNP [dm3] 3R_20947854_SNP [dm6]	G	A	2.001e^-4	0.429	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
X	20953931	X_20953931_SNP [dm3] X_21082904_SNP [dm6]	A	T	2.002e^-4	0.429	DOWNSTREAM bves INTERGENIC
3R	14797007	3R_14797007_SNP [dm3] 3R_18971285_SNP [dm6]	C	T	2.003e^-4	0.429	SPLICE_SITE_REGION CG42613 & 1 other INTRON CG42613 & 1 other
2R	13368052	2R_13368052_SNP [dm3] 2R_17480547_SNP [dm6]	T	C	2.005e^-4	0.429	SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site mE1_TFBS_cad
2L	18276266	2L_18276266_SNP [dm3] 2L_18276266_SNP [dm6]	T	A	2.006e^-4	0.429	UPSTREAM CG42750 INTERGENIC
3L	17159722	3L_17159722_SNP [dm3] 3L_17166622_SNP [dm6]	T	A	2.008e^-4	0.429	UPSTREAM CR43433 INTRON Rbp6
2R	16829782	2R_16829782_SNP [dm3] 2R_20942277_SNP [dm6]	T	C	2.015e^-4	0.43	INTERGENIC
X	17044775	X_17044775_SNP [dm3] X_17150742_SNP [dm6]	C	G	2.020e^-4	0.43	DOWNSTREAM xmas-1 & 1 other INTERGENIC
2L	9622336	2L_9622336_SNP [dm3] 2L_9622336_SNP [dm6]	C	T	2.021e^-4	0.43	INTRON GlcAT-S
2L	19650400	2L_19650400_SNP [dm3] 2L_19650400_SNP [dm6]	C	G	2.025e^-4	0.43	INTRON Lar
X	17044835	X_17044835_SNP [dm3] X_17150802_SNP [dm6]	A	T	2.028e^-4	0.43	DOWNSTREAM xmas-1 & 1 other INTERGENIC
X	18913239	X_18913239_SNP [dm3] X_19019206_SNP [dm6]	T	A	2.028e^-4	0.43	INTRON CG43759
3R	22074614	3R_22074614_SNP [dm3] 3R_26248892_SNP [dm6]	C	T	2.029e^-4	0.43	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16558087	X_16558087_SNP [dm3] X_16664054_SNP [dm6]	T	C	2.035e^-4	0.43	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	5100941	3L_5100941_SNP [dm3] 3L_5100941_SNP [dm6]	T	C	2.036e^-4	0.43	INTERGENIC
2R	19227830	2R_19227830_SNP [dm3] 2R_23340307_SNP [dm6]	G	A	2.039e^-4	0.43	INTERGENIC
2L	7787583	2L_7787583_SNP [dm3] 2L_7787583_SNP [dm6]	G	T	2.041e^-4	0.43	INTRON CG7149
3L	12555588	3L_12555588_SNP [dm3] 3L_12562488_SNP [dm6]	C	T	2.041e^-4	0.43	INTRON sowah
3L	7456057	3L_7456057_SNP [dm3] 3L_7462957_SNP [dm6]	C	T	2.052e^-4	0.431	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2594799	2L_2594799_SNP [dm3] 2L_2594799_SNP [dm6]	G	C	2.053e^-4	0.431	INTERGENIC
X	9205357	X_9205357_DEL [dm3] X_9311324_DEL [dm6]	GGTTGTACATAG...	G	2.054e^-4	0.431	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6448678	3L_6448678_SNP [dm3] 3L_6455578_SNP [dm6]	C	T	2.055e^-4	0.431	INTRON CG42747
3R	23246664	3R_23246664_SNP [dm3] 3R_27420942_SNP [dm6]	G	C	2.055e^-4	0.431	INTRON side
2L	18783539	2L_18783539_SNP [dm3] 2L_18783539_SNP [dm6]	C	G	2.063e^-4	0.432	UPSTREAM ham INTRON ham	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4041084	2L_4041084_SNP [dm3] 2L_4041084_SNP [dm6]	G	C	2.068e^-4	0.432	INTRON ed
2L	10966752	2L_10966752_SNP [dm3] 2L_10966752_SNP [dm6]	A	G	2.070e^-4	0.432	UTR_5_PRIME CG33129 UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_dl
X	21805603	X_21805603_SNP [dm3] X_22403768_SNP [dm6]	G	A	2.074e^-4	0.433	INTERGENIC	transposable element FlyBase
3L	18481122	3L_18481122_SNP [dm3] 3L_18488022_SNP [dm6]	G	A	2.083e^-4	0.433	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
X	16131963	X_16131963_SNP [dm3] X_16237930_SNP [dm6]	A	T	2.084e^-4	0.433	INTERGENIC
2R	3144248	2R_3144248_DEL [dm3] 2R_7256743_DEL [dm6]	TGTCTTA	GAAG	2.084e^-4	0.433	DOWNSTREAM CR45280 INTERGENIC
3R	2169760	3R_2169760_SNP [dm3] 3R_6344038_SNP [dm6]	A	T	2.085e^-4	0.433	START_GAINED CG17919 UTR_5_PRIME CG17919 DOWNSTREAM CG10298 & 1 other
2R	7652713	2R_7652713_SNP [dm3] 2R_11765208_SNP [dm6]	G	T	2.089e^-4	0.433	INTRON ths
3R	20570059	3R_20570059_SNP [dm3] 3R_24744337_SNP [dm6]	T	C	2.098e^-4	0.433	INTRON tok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13718814	2L_13718814_SNP [dm3] 2L_13718814_SNP [dm6]	A	G	2.098e^-4	0.433	INTERGENIC
2R	14176198	2R_14176198_DEL [dm3] 2R_18288693_DEL [dm6]	CTC	C	2.100e^-4	0.433	UTR_5_PRIME sbb UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8496048	X_8496048_SNP [dm3] X_8602015_SNP [dm6]	A	G	2.100e^-4	0.433	UTR_3_PRIME Crag DOWNSTREAM Caf1-180 & 1 other
X	17044686	X_17044686_SNP [dm3] X_17150653_SNP [dm6]	A	C	2.102e^-4	0.433	DOWNSTREAM xmas-1 & 1 other INTERGENIC
2L	11744384	2L_11744384_SNP [dm3] 2L_11744384_SNP [dm6]	T	C	2.104e^-4	0.433	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
2L	15211483	2L_15211483_SNP [dm3] 2L_15211483_SNP [dm6]	C	G	2.105e^-4	0.433	INTERGENIC
2L	18309718	2L_18309718_SNP [dm3] 2L_18309718_SNP [dm6]	A	G	2.106e^-4	0.433	UPSTREAM CR44695 & 1 other EXON CR44694
2R	5829248	2R_5829248_SNP [dm3] 2R_9941743_SNP [dm6]	A	G	2.108e^-4	0.433	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
X	21848196	X_21848196_DEL [dm3] X_22446360_DEL [dm6]	TAAGAAAAC	T	2.110e^-4	0.433	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15556757	2L_15556757_SNP [dm3] 2L_15556757_SNP [dm6]	G	T	2.119e^-4	0.433	INTRON kek3	TF binding site mE1_TFBS_HSA
3R	21561193	3R_21561193_SNP [dm3] 3R_25735471_SNP [dm6]	T	A	2.119e^-4	0.433	INTRON LpR2	TF binding site mE1_TFBS_Trl
2L	12848985	2L_12848985_SNP [dm3] 2L_12848985_SNP [dm6]	T	C	2.120e^-4	0.433	INTERGENIC
2L	20665245	2L_20665245_DEL [dm3] 2L_20665245_DEL [dm6]	GTGTCAAAGCGCC...	TA	2.120e^-4	0.433	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
2L	2158315	2L_2158315_SNP [dm3] 2L_2158315_SNP [dm6]	A	G	2.127e^-4	0.434	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10341647	3R_10341647_SNP [dm3] 3R_14515925_SNP [dm6]	C	T	2.128e^-4	0.434	SYNONYMOUS_CODING Pde6
2R	5849012	2R_5849012_SNP [dm3] 2R_9961507_SNP [dm6]	T	G	2.131e^-4	0.434	INTRON Pal1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11019615	3L_11019615_SNP [dm3] 3L_11026515_SNP [dm6]	C	A	2.139e^-4	0.434	NON_SYNONYMOUS_CODING CG32079
2R	5829198	2R_5829198_SNP [dm3] 2R_9941693_SNP [dm6]	A	C	2.139e^-4	0.434	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	9952223	3L_9952223_SNP [dm3] 3L_9959123_SNP [dm6]	A	T	2.139e^-4	0.434	INTRON CG34356
X	21846243	X_21846243_SNP [dm3] X_22444407_SNP [dm6]	G	A	2.141e^-4	0.434	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	11392750	X_11392750_SNP [dm3] X_11498717_SNP [dm6]	C	T	2.143e^-4	0.434	INTRON Drak
3R	10336185	3R_10336185_SNP [dm3] 3R_14510463_SNP [dm6]	T	A	2.153e^-4	0.435	SYNONYMOUS_CODING HtrA2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	25923239	3R_25923239_SNP [dm3] 3R_30097517_SNP [dm6]	A	G	2.155e^-4	0.435	INTRON sima	TF binding site mE1_TFBS_cnc
2L	22310177	2L_22310177_SNP [dm3] 2L_22310177_SNP [dm6]	C	T	2.157e^-4	0.435	INTRON CG17018	transposable element FlyBase
2R	9206361	2R_9206361_SNP [dm3] 2R_13318856_SNP [dm6]	C	T	2.159e^-4	0.435	INTERGENIC
2L	4209514	2L_4209514_SNP [dm3] 2L_4209514_SNP [dm6]	C	T	2.159e^-4	0.435	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12313526	2R_12313526_SNP [dm3] 2R_16426021_SNP [dm6]	T	A	2.162e^-4	0.435	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10588937	3L_10588937_SNP [dm3] 3L_10595837_SNP [dm6]	A	G	2.168e^-4	0.436	INTERGENIC
3L	18443827	3L_18443827_SNP [dm3] 3L_18450727_SNP [dm6]	A	C	2.171e^-4	0.436	INTERGENIC
2R	7652763	2R_7652763_SNP [dm3] 2R_11765258_SNP [dm6]	T	C	2.173e^-4	0.436	INTRON ths
2L	11945507	2L_11945507_SNP [dm3] 2L_11945507_SNP [dm6]	G	A	2.177e^-4	0.436	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7950576	2R_7950576_SNP [dm3] 2R_12063071_SNP [dm6]	T	G	2.180e^-4	0.436	DOWNSTREAM Drep-3 INTERGENIC
2L	15550558	2L_15550558_SNP [dm3] 2L_15550558_SNP [dm6]	C	T	2.180e^-4	0.436	SYNONYMOUS_CODING CG15256 DOWNSTREAM CR45728
X	12597327	X_12597327_SNP [dm3] X_12703294_SNP [dm6]	T	C	2.181e^-4	0.436	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17490528	3R_17490528_SNP [dm3] 3R_21664806_SNP [dm6]	T	C	2.183e^-4	0.436	INTRON CG15497	TF binding site mE1_TFBS_bab1
2L	22887007	2L_22887007_SNP [dm3] 2L_22994275_SNP [dm6]	A	T	2.185e^-4	0.436	INTERGENIC
2R	8834430	2R_8834430_SNP [dm3] 2R_12946925_SNP [dm6]	C	A	2.191e^-4	0.436	UPSTREAM Mdr49 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21561347	3R_21561347_SNP [dm3] 3R_25735625_SNP [dm6]	T	C	2.193e^-4	0.436	INTRON LpR2	TF binding site mE1_TFBS_Trl
X	9572757	X_9572757_SNP [dm3] X_9678724_SNP [dm6]	T	G	2.196e^-4	0.436	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11786248	2L_11786248_SNP [dm3] 2L_11786248_SNP [dm6]	G	A	2.197e^-4	0.436	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15158778	3R_15158778_SNP [dm3] 3R_19333056_SNP [dm6]	G	C	2.208e^-4	0.438	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6574336	X_6574336_SNP [dm3] X_6680303_SNP [dm6]	C	A	2.209e^-4	0.438	SYNONYMOUS_CODING l_1_G0255	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5231044	2R_5231044_SNP [dm3] 2R_9343539_SNP [dm6]	T	G	2.215e^-4	0.438	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_inv
3L	18482222	3L_18482222_SNP [dm3] 3L_18489122_SNP [dm6]	C	G	2.216e^-4	0.438	INTRON AstC-R2
X	2329786	X_2329786_SNP [dm3] X_2435753_SNP [dm6]	A	G	2.219e^-4	0.438	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4051424	3L_4051424_DEL [dm3] 3L_4051424_DEL [dm6]	GT	G	2.226e^-4	0.438	INTRON CG1136	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	11444979	2L_11444979_SNP [dm3] 2L_11444979_SNP [dm6]	T	C	2.228e^-4	0.438	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11444994	2L_11444994_SNP [dm3] 2L_11444994_SNP [dm6]	C	G	2.228e^-4	0.438	INTRON salm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9297098	3L_9297098_INS [dm3] 3L_9303998_INS [dm6]	C	CCAGCACACATATAC...	2.230e^-4	0.438	INTERGENIC
3R	12526438	3R_12526438_SNP [dm3] 3R_16700716_SNP [dm6]	T	G	2.236e^-4	0.438	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8642656	2R_8642656_SNP [dm3] 2R_12755151_SNP [dm6]	G	C	2.239e^-4	0.438	UTR_5_PRIME Taz UPSTREAM Taz INTRON Taz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	6230898	3R_6230898_SNP [dm3] 3R_10405176_SNP [dm6]	T	C	2.239e^-4	0.438	SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad
3R	2012574	3R_2012574_SNP [dm3] 3R_6186852_SNP [dm6]	C	T	2.242e^-4	0.438	UPSTREAM NPFR INTERGENIC
3L	4296196	3L_4296196_SNP [dm3] 3L_4296196_SNP [dm6]	A	T	2.243e^-4	0.438	SYNONYMOUS_CODING dyl	TF binding site mE1_TFBS_cad
2R	2475823	2R_2475823_SNP [dm3] 2R_6588318_SNP [dm6]	G	T	2.246e^-4	0.438	INTRON jing
3R	10341230	3R_10341230_SNP [dm3] 3R_14515508_SNP [dm6]	A	T	2.247e^-4	0.438	UTR_3_PRIME Pde6
3R	20722130	3R_20722130_SNP [dm3] 3R_24896408_SNP [dm6]	T	A	2.248e^-4	0.438	SPLICE_SITE_REGION CG11069 INTRON CG11069
X	20855305	X_20855305_SNP [dm3] X_20984278_SNP [dm6]	G	A	2.253e^-4	0.438	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4283309	X_4283309_DEL [dm3] X_4389276_DEL [dm6]	AA	A	2.253e^-4	0.438	INTRON CR32773
X	21845546	X_21845546_SNP [dm3] X_22443710_SNP [dm6]	T	C	2.254e^-4	0.438	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	17203348	3R_17203348_SNP [dm3] 3R_21377626_SNP [dm6]	T	C	2.260e^-4	0.438	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10891206	2L_10891206_SNP [dm3] 2L_10891206_SNP [dm6]	T	A	2.261e^-4	0.438	INTERGENIC
3R	23488825	3R_23488825_SNP [dm3] 3R_27663103_SNP [dm6]	G	A	2.267e^-4	0.439	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3670741	2L_3670741_SNP [dm3] 2L_3670741_SNP [dm6]	A	G	2.282e^-4	0.441	UPSTREAM Sfp24Bb & 1 other INTRON CG34340
2R	7803907	2R_7803907_SNP [dm3] 2R_11916402_SNP [dm6]	G	A	2.282e^-4	0.441	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15461705	2L_15461705_SNP [dm3] 2L_15461705_SNP [dm6]	A	T	2.292e^-4	0.441	INTERGENIC
X	16881683	X_16881683_SNP [dm3] X_16987650_SNP [dm6]	C	T	2.292e^-4	0.441	UPSTREAM CG45002 INTRON CG45002
2R	7033581	2R_7033581_SNP [dm3] 2R_11146076_SNP [dm6]	A	G	2.293e^-4	0.441	UPSTREAM CG13231 INTRON CG13229
3R	17861200	3R_17861200_SNP [dm3] 3R_22035478_SNP [dm6]	C	G	2.294e^-4	0.441	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	11073290	X_11073290_SNP [dm3] X_11179257_SNP [dm6]	A	T	2.298e^-4	0.441	INTERGENIC
X	15995072	X_15995072_SNP [dm3] X_16101039_SNP [dm6]	A	G	2.300e^-4	0.441	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11709661	2L_11709661_INS [dm3] 2L_11709661_INS [dm6]	A	AA	2.307e^-4	0.441	INTERGENIC
X	14428269	X_14428269_SNP [dm3] X_14534236_SNP [dm6]	A	C	2.308e^-4	0.441	INTERGENIC
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	2.311e^-4	0.441	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
2L	15761192	2L_15761192_SNP [dm3] 2L_15761192_SNP [dm6]	A	G	2.313e^-4	0.441	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10348083	3R_10348083_SNP [dm3] 3R_14522361_SNP [dm6]	C	T	2.313e^-4	0.441	SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
3L	15691341	3L_15691341_SNP [dm3] 3L_15698241_SNP [dm6]	C	T	2.314e^-4	0.441	NON_SYNONYMOUS_CODING comm2	TF binding site mE1_TFBS_sens
2L	22197609	2L_22197609_SNP [dm3] 2L_22197609_SNP [dm6]	A	G	2.320e^-4	0.441	INTRON Ir40a
X	12854807	X_12854807_SNP [dm3] X_12960774_SNP [dm6]	A	G	2.322e^-4	0.441	UTR_3_PRIME CG32642 DOWNSTREAM CG32642
3R	22437736	3R_22437736_SNP [dm3] 3R_26612014_SNP [dm6]	G	A	2.323e^-4	0.441	INTERGENIC
2L	4459472	2L_4459472_SNP [dm3] 2L_4459472_SNP [dm6]	G	T	2.323e^-4	0.441	UPSTREAM CG15435 INTRON mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	827631	3L_827631_INS [dm3] 3L_827631_INS [dm6]	T	TT	2.326e^-4	0.441	UPSTREAM snoRNA:Me28S-C788b & 2 others DOWNSTREAM snoRNA:Me28S-G3113a INTRON CG13900 & 1 other
2R	822280	2R_822280_SNP [dm3] 2R_4934775_SNP [dm6]	G	A	2.328e^-4	0.441	INTRON Ir41a	transposable element FlyBase
X	10713278	X_10713278_SNP [dm3] X_10819245_SNP [dm6]	A	C	2.333e^-4	0.441	INTRON Imp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1179259	3L_1179259_SNP [dm3] 3L_1179259_SNP [dm6]	T	A	2.333e^-4	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9489591	X_9489591_SNP [dm3] X_9595558_SNP [dm6]	A	T	2.338e^-4	0.441	DOWNSTREAM CR45543 INTERGENIC
2L	9439232	2L_9439232_SNP [dm3] 2L_9439232_SNP [dm6]	G	A	2.340e^-4	0.441	DOWNSTREAM CG33723 INTRON numb
2L	10968273	2L_10968273_DEL [dm3] 2L_10968273_DEL [dm6]	TAAGTT	A	2.341e^-4	0.441	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	7435563	2R_7435563_INS [dm3] 2R_11548058_INS [dm6]	A	AT	2.342e^-4	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	15157657	3R_15157657_SNP [dm3] 3R_19331935_SNP [dm6]	A	C	2.351e^-4	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17546341	2L_17546341_SNP [dm3] 2L_17546341_SNP [dm6]	C	A	2.355e^-4	0.441	UPSTREAM CR45697 INTERGENIC
2L	11443838	2L_11443838_INS [dm3] 2L_11443838_INS [dm6]	T	AA	2.355e^-4	0.441	INTRON salm
3L	3897283	3L_3897283_SNP [dm3] 3L_3897283_SNP [dm6]	C	A	2.356e^-4	0.441	SYNONYMOUS_CODING CG14977 UPSTREAM Gr63a DOWNSTREAM Ccz1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19536496	2R_19536496_SNP [dm3] 2R_23648973_SNP [dm6]	T	A	2.359e^-4	0.441	INTRON retn	TF binding site BDTNP1_TFBS_dl
X	18923197	X_18923197_SNP [dm3] X_19029164_SNP [dm6]	G	A	2.360e^-4	0.441	DOWNSTREAM CG43759 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.990e^-17)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.3473	0.0154
In_3R_K	6.1576	0.046

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3102 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	2.150e^-7	0.237	INTRON Cad87A
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	2.531e^-7	0.237	DOWNSTREAM CR44941 INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	4.883e^-7	0.246	INTRON Octbeta3R
3R	22938942	3R_22938942_SNP [dm3] 3R_27113220_SNP [dm6]	G	A	5.256e^-7	0.246	SYNONYMOUS_CODING CG5815 UPSTREAM gb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	7.759e^-7	0.267	INTRON CG14877
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	1.140e^-6	0.267	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	1.187e^-6	0.267	INTRON Cad87A
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	1.290e^-6	0.267	INTERGENIC
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	1.496e^-6	0.267	INTERGENIC
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.763e^-6	0.267	INTRON 4EHP
3R	7734023	3R_7734023_SNP [dm3] 3R_11908301_SNP [dm6]	C	G	1.849e^-6	0.267	INTRON Cad87A
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	1.911e^-6	0.267	INTRON Cad87A
3R	6549152	3R_6549152_SNP [dm3] 3R_10723430_SNP [dm6]	A	T	2.269e^-6	0.267	INTERGENIC
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	2.635e^-6	0.267	INTERGENIC
3R	11724703	3R_11724703_SNP [dm3] 3R_15898981_SNP [dm6]	T	G	2.746e^-6	0.267	INTRON glob1
3R	6474640	3R_6474640_SNP [dm3] 3R_10648918_SNP [dm6]	G	T	3.121e^-6	0.267	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	3.134e^-6	0.267	UTR_3_PRIME Ack DOWNSTREAM Chd64
3R	6550322	3R_6550322_SNP [dm3] 3R_10724600_SNP [dm6]	C	T	3.135e^-6	0.267	INTERGENIC
3L	6570836	3L_6570836_SNP [dm3] 3L_6577736_SNP [dm6]	C	T	3.294e^-6	0.267	INTRON CG18769 & 1 other
2L	14012555	2L_14012555_SNP [dm3] 2L_14012555_SNP [dm6]	T	C	3.518e^-6	0.267	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21475879	3L_21475879_SNP [dm3] 3L_21482779_SNP [dm6]	G	T	3.659e^-6	0.267	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	19893881	3R_19893881_DEL [dm3] 3R_24068159_DEL [dm6]	TGGAAAGCGTTGC...	G	3.661e^-6	0.267	INTRON 4EHP
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	3.676e^-6	0.267	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	15734502	2L_15734502_SNP [dm3] 2L_15734502_SNP [dm6]	T	C	3.778e^-6	0.267	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	8039336	3L_8039336_SNP [dm3] 3L_8046236_SNP [dm6]	T	C	3.787e^-6	0.267	INTRON nmo
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	3.839e^-6	0.267	INTERGENIC
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	3.935e^-6	0.267	INTERGENIC
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	4.114e^-6	0.267	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	6288956	3R_6288956_SNP [dm3] 3R_10463234_SNP [dm6]	G	T	4.133e^-6	0.267	EXON CR44955
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	4.454e^-6	0.274	INTRON Cad87A
3R	7733789	3R_7733789_SNP [dm3] 3R_11908067_SNP [dm6]	G	A	4.666e^-6	0.274	INTRON Cad87A
3R	5198177	3R_5198177_SNP [dm3] 3R_9372455_SNP [dm6]	C	T	4.671e^-6	0.274	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
3R	6640823	3R_6640823_DEL [dm3] 3R_10815101_DEL [dm6]	GGCTCTAAG	G	4.911e^-6	0.275	UPSTREAM CG4089 & 1 other INTERGENIC
3L	18072017	3L_18072017_SNP [dm3] 3L_18078917_SNP [dm6]	T	G	5.077e^-6	0.275	DOWNSTREAM CR45392 INTERGENIC
3R	6661407	3R_6661407_SNP [dm3] 3R_10835685_SNP [dm6]	G	A	5.128e^-6	0.275	INTRON Cad86C
3R	6240000	3R_6240000_SNP [dm3] 3R_10414278_SNP [dm6]	C	T	6.205e^-6	0.323	SYNONYMOUS_CODING CG6345 DOWNSTREAM Rrp46	TF binding site mE1_TFBS_cad
2L	17213606	2L_17213606_SNP [dm3] 2L_17213606_SNP [dm6]	C	T	7.019e^-6	0.337	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14845685	3R_14845685_SNP [dm3] 3R_19019963_SNP [dm6]	C	T	7.156e^-6	0.337	DOWNSTREAM gukh INTRON gukh
3R	6228184	3R_6228184_SNP [dm3] 3R_10402462_SNP [dm6]	C	T	7.471e^-6	0.337	SYNONYMOUS_CODING mthl11 DOWNSTREAM CG6325
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	7.636e^-6	0.337	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
2L	6887682	2L_6887682_SNP [dm3] 2L_6887682_SNP [dm6]	C	A	7.990e^-6	0.337	INTRON Nlg2
3R	6537736	3R_6537736_SNP [dm3] 3R_10712014_SNP [dm6]	G	A	8.136e^-6	0.337	UPSTREAM CG14689 INTERGENIC
3R	18384118	3R_18384118_DEL [dm3] 3R_22558396_DEL [dm6]	TT	T	8.610e^-6	0.337	UTR_3_PRIME CG5278
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	8.657e^-6	0.337	UPSTREAM CG3306 & 1 other INTERGENIC
3R	5464895	3R_5464895_SNP [dm3] 3R_9639173_SNP [dm6]	C	T	9.066e^-6	0.337	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
2L	15553812	2L_15553812_INS [dm3] 2L_15553812_INS [dm6]	T	TG	9.447e^-6	0.337	INTRON kek3
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	9.577e^-6	0.337	INTERGENIC
3R	6474322	3R_6474322_SNP [dm3] 3R_10648600_SNP [dm6]	A	T	9.590e^-6	0.337	INTERGENIC
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	9.676e^-6	0.337	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	7975272	3R_7975272_SNP [dm3] 3R_12149550_SNP [dm6]	C	T	9.766e^-6	0.337	INTRON dpr15
3R	6251148	3R_6251148_SNP [dm3] 3R_10425426_SNP [dm6]	C	A	1.005e^-5	0.337	INTERGENIC
3R	2594753	3R_2594753_SNP [dm3] 3R_6769031_SNP [dm6]	A	G	1.006e^-5	0.337	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7727619	3R_7727619_SNP [dm3] 3R_11901897_SNP [dm6]	G	A	1.008e^-5	0.337	SYNONYMOUS_CODING Cad87A
3R	6231815	3R_6231815_SNP [dm3] 3R_10406093_SNP [dm6]	G	A	1.009e^-5	0.337	SYNONYMOUS_CODING CG6325
3R	6509171	3R_6509171_SNP [dm3] 3R_10683449_SNP [dm6]	A	G	1.044e^-5	0.337	INTRON CR44230
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	1.064e^-5	0.337	UPSTREAM CG3306 & 1 other INTERGENIC
3R	6665005	3R_6665005_SNP [dm3] 3R_10839283_SNP [dm6]	A	T	1.080e^-5	0.337	NON_SYNONYMOUS_CODING Cad86C INTRON Cad86C
3L	18687881	3L_18687881_SNP [dm3] 3L_18694781_SNP [dm6]	A	T	1.112e^-5	0.337	SYNONYMOUS_CODING CG6893 UPSTREAM CR43987
3R	7988054	3R_7988054_SNP [dm3] 3R_12162332_SNP [dm6]	C	A	1.124e^-5	0.337	DOWNSTREAM Cpn INTERGENIC
3R	7727598	3R_7727598_SNP [dm3] 3R_11901876_SNP [dm6]	T	C	1.132e^-5	0.337	SYNONYMOUS_CODING Cad87A
3R	6281138	3R_6281138_SNP [dm3] 3R_10455416_SNP [dm6]	T	C	1.136e^-5	0.337	INTERGENIC
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	1.150e^-5	0.337	UPSTREAM ppk27 INTRON CG32264
2L	16334400	2L_16334400_SNP [dm3] 2L_16334400_SNP [dm6]	T	A	1.160e^-5	0.337	SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	1.202e^-5	0.337	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6497431	3R_6497431_SNP [dm3] 3R_10671709_SNP [dm6]	C	T	1.211e^-5	0.337	INTERGENIC	TF binding site mE1_TFBS_sens
3R	8363127	3R_8363127_SNP [dm3] 3R_12537405_SNP [dm6]	A	G	1.213e^-5	0.337	INTRON Octbeta3R
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	1.217e^-5	0.337	INTRON Octbeta3R
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	1.256e^-5	0.337	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6509176	3R_6509176_SNP [dm3] 3R_10683454_SNP [dm6]	A	T	1.257e^-5	0.337	INTRON CR44230
2L	6887676	2L_6887676_SNP [dm3] 2L_6887676_SNP [dm6]	A	T	1.314e^-5	0.337	INTRON Nlg2
3L	19096461	3L_19096461_DEL [dm3] 3L_19103361_DEL [dm6]	ATGGCAAAACCGA...	A	1.338e^-5	0.337	INTERGENIC
3R	2937922	3R_2937922_SNP [dm3] 3R_7112200_SNP [dm6]	T	C	1.358e^-5	0.337	UPSTREAM Alh INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	9594519	3L_9594519_SNP [dm3] 3L_9601419_SNP [dm6]	T	A	1.422e^-5	0.337	UPSTREAM CG3306 & 1 other INTERGENIC
X	16032341	X_16032341_SNP [dm3] X_16138308_SNP [dm6]	G	T	1.427e^-5	0.337	INTRON disco-r
3R	6549159	3R_6549159_SNP [dm3] 3R_10723437_SNP [dm6]	T	C	1.466e^-5	0.337	INTERGENIC
X	16032172	X_16032172_SNP [dm3] X_16138139_SNP [dm6]	A	T	1.494e^-5	0.337	INTRON disco-r
3R	2937888	3R_2937888_SNP [dm3] 3R_7112166_SNP [dm6]	T	A	1.538e^-5	0.337	UPSTREAM Alh INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	7734348	3R_7734348_SNP [dm3] 3R_11908626_SNP [dm6]	T	C	1.565e^-5	0.337	INTRON Cad87A
3R	6549161	3R_6549161_SNP [dm3] 3R_10723439_SNP [dm6]	T	C	1.582e^-5	0.337	INTERGENIC
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	1.602e^-5	0.337	DOWNSTREAM TkR86C INTERGENIC
3R	11719649	3R_11719649_SNP [dm3] 3R_15893927_SNP [dm6]	A	G	1.652e^-5	0.337	INTRON CG14877
3R	16472598	3R_16472598_SNP [dm3] 3R_20646876_SNP [dm6]	C	T	1.670e^-5	0.337	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
3L	1867462	3L_1867462_SNP [dm3] 3L_1867462_SNP [dm6]	C	T	1.698e^-5	0.337	SYNONYMOUS_CODING CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3480855	3R_3480855_SNP [dm3] 3R_7655133_SNP [dm6]	T	C	1.705e^-5	0.337	INTERGENIC
3R	7945137	3R_7945137_SNP [dm3] 3R_12119415_SNP [dm6]	T	A	1.715e^-5	0.337	INTERGENIC
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	1.720e^-5	0.337	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	15944024	2L_15944024_SNP [dm3] 2L_15944024_SNP [dm6]	C	G	1.744e^-5	0.337	INTRON beat-Ib
3R	6514764	3R_6514764_SNP [dm3] 3R_10689042_SNP [dm6]	C	A	1.767e^-5	0.337	INTRON Skeletor	TF binding site mE1_TFBS_cad
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	1.796e^-5	0.337	INTRON Cad87A
3L	9594490	3L_9594490_DEL [dm3] 3L_9601390_DEL [dm6]	ATTTCT	A	1.806e^-5	0.337	UPSTREAM CG3306 & 1 other INTERGENIC
3R	6282506	3R_6282506_SNP [dm3] 3R_10456784_SNP [dm6]	C	A	1.810e^-5	0.337	INTERGENIC
2L	13087494	2L_13087494_SNP [dm3] 2L_13087494_SNP [dm6]	C	A	1.820e^-5	0.337	INTERGENIC
3R	7988292	3R_7988292_SNP [dm3] 3R_12162570_SNP [dm6]	G	C	1.842e^-5	0.337	DOWNSTREAM Cpn INTERGENIC
3R	20610616	3R_20610616_SNP [dm3] 3R_24784894_SNP [dm6]	G	A	1.856e^-5	0.337	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
3L	19096539	3L_19096539_SNP [dm3] 3L_19103439_SNP [dm6]	C	A	1.913e^-5	0.337	INTERGENIC
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	1.964e^-5	0.337	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.970e^-5	0.337	UPSTREAM hoe1 INTRON hoe1
X	4291380	X_4291380_SNP [dm3] X_4397347_SNP [dm6]	T	G	1.985e^-5	0.337	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	2.017e^-5	0.337	UPSTREAM CG3306 & 1 other INTERGENIC
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	2.018e^-5	0.337	UTR_5_PRIME CG15186
3R	16472513	3R_16472513_SNP [dm3] 3R_20646791_SNP [dm6]	A	G	2.023e^-5	0.337	SYNONYMOUS_CODING GluRIIE
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	2.023e^-5	0.337	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
3R	16472591	3R_16472591_SNP [dm3] 3R_20646869_SNP [dm6]	T	A	2.036e^-5	0.337	INTRON GluRIIE
3R	16472596	3R_16472596_SNP [dm3] 3R_20646874_SNP [dm6]	T	A	2.036e^-5	0.337	INTRON GluRIIE
3R	16472615	3R_16472615_SNP [dm3] 3R_20646893_SNP [dm6]	G	A	2.036e^-5	0.337	SYNONYMOUS_CODING GluRIIE
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	2.038e^-5	0.337	INTRON beat-Vc
3R	7760894	3R_7760894_INS [dm3] 3R_11935172_INS [dm6]	C	CT	2.122e^-5	0.337	INTRON Cad87A
3R	16472583	3R_16472583_SNP [dm3] 3R_20646861_SNP [dm6]	G	A	2.156e^-5	0.337	INTRON GluRIIE
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	2.172e^-5	0.337	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6495098	3R_6495098_SNP [dm3] 3R_10669376_SNP [dm6]	T	C	2.175e^-5	0.337	INTERGENIC
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	2.189e^-5	0.337	INTRON Dscam4
2L	20038457	2L_20038457_SNP [dm3] 2L_20038457_SNP [dm6]	C	T	2.192e^-5	0.337	INTRON sNPF
3R	6550507	3R_6550507_SNP [dm3] 3R_10724785_SNP [dm6]	C	T	2.194e^-5	0.337	INTERGENIC
3L	2715961	3L_2715961_SNP [dm3] 3L_2715961_SNP [dm6]	T	G	2.235e^-5	0.337	INTERGENIC
2L	8960999	2L_8960999_SNP [dm3] 2L_8960999_SNP [dm6]	T	A	2.260e^-5	0.337	SYNONYMOUS_CODING CG9525	TF binding site mE1_TFBS_HSA
3R	7760836	3R_7760836_SNP [dm3] 3R_11935114_SNP [dm6]	A	G	2.278e^-5	0.337	INTRON Cad87A
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	2.295e^-5	0.337	INTERGENIC
3R	6241482	3R_6241482_SNP [dm3] 3R_10415760_SNP [dm6]	C	A	2.307e^-5	0.337	SYNONYMOUS_CODING CG6345	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	6283545	3R_6283545_DEL [dm3] 3R_10457823_DEL [dm6]	GC	G	2.308e^-5	0.337	INTERGENIC
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	2.320e^-5	0.337	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
2R	8129519	2R_8129519_DEL [dm3] 2R_12242014_DEL [dm6]	TAAT	T	2.330e^-5	0.337	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	20074668	2L_20074668_SNP [dm3] 2L_20074668_SNP [dm6]	T	C	2.332e^-5	0.337	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11719639	3R_11719639_SNP [dm3] 3R_15893917_SNP [dm6]	C	A	2.416e^-5	0.337	INTRON CG14877
3R	20610663	3R_20610663_SNP [dm3] 3R_24784941_SNP [dm6]	G	T	2.423e^-5	0.337	UTR_3_PRIME CG5805 DOWNSTREAM CG42331
3R	16473297	3R_16473297_SNP [dm3] 3R_20647575_SNP [dm6]	A	G	2.432e^-5	0.337	SYNONYMOUS_CODING GluRIIE
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	2.465e^-5	0.337	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	2.493e^-5	0.337	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2L	20042586	2L_20042586_SNP [dm3] 2L_20042586_SNP [dm6]	A	T	2.510e^-5	0.337	INTRON sNPF
2L	15761534	2L_15761534_SNP [dm3] 2L_15761534_SNP [dm6]	A	T	2.521e^-5	0.337	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	15647752	2L_15647752_SNP [dm3] 2L_15647752_SNP [dm6]	G	A	2.524e^-5	0.337	UTR_3_PRIME CG4587
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	2.551e^-5	0.337	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	2.557e^-5	0.337	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	2.557e^-5	0.337	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	2.557e^-5	0.337	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	2.557e^-5	0.337	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	2.557e^-5	0.337	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	2.557e^-5	0.337	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	2.557e^-5	0.337	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	2.557e^-5	0.337	SYNONYMOUS_CODING emb
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	2.566e^-5	0.337	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	2.566e^-5	0.337	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	2.566e^-5	0.337	INTERGENIC
2R	14662062	2R_14662062_SNP [dm3] 2R_18774557_SNP [dm6]	G	A	2.569e^-5	0.337	UTR_3_PRIME Mctp UPSTREAM CR43964
2L	14001452	2L_14001452_SNP [dm3] 2L_14001452_SNP [dm6]	T	A	2.598e^-5	0.338	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	2.626e^-5	0.339	SYNONYMOUS_CODING GluRIIE
X	8631631	X_8631631_SNP [dm3] X_8737598_SNP [dm6]	C	T	2.642e^-5	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	11844948	X_11844948_SNP [dm3] X_11950915_SNP [dm6]	C	G	2.657e^-5	0.339	INTRON cac
2R	8115961	2R_8115961_SNP [dm3] 2R_12228456_SNP [dm6]	G	T	2.767e^-5	0.35	INTRON CG8854
2R	6684624	2R_6684624_SNP [dm3] 2R_10797119_SNP [dm6]	G	A	2.792e^-5	0.35	INTRON CG33144
3R	6514731	3R_6514731_SNP [dm3] 3R_10689009_SNP [dm6]	C	G	2.800e^-5	0.35	INTRON Skeletor
X	4291351	X_4291351_SNP [dm3] X_4397318_SNP [dm6]	T	G	2.863e^-5	0.352	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	2.893e^-5	0.352	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	2.906e^-5	0.352	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7726206	3R_7726206_SNP [dm3] 3R_11900484_SNP [dm6]	G	A	2.942e^-5	0.352	NON_SYNONYMOUS_CODING Cad87A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15647780	2L_15647780_SNP [dm3] 2L_15647780_SNP [dm6]	C	A	2.944e^-5	0.352	UTR_3_PRIME CG4587
3L	11266735	3L_11266735_SNP [dm3] 3L_11273635_SNP [dm6]	C	T	2.945e^-5	0.352	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11769263	2L_11769263_SNP [dm3] 2L_11769263_SNP [dm6]	G	T	2.948e^-5	0.352	INTERGENIC
3R	16472571	3R_16472571_SNP [dm3] 3R_20646849_SNP [dm6]	A	G	3.001e^-5	0.354	INTRON GluRIIE
2L	11768402	2L_11768402_INS [dm3] 2L_11768402_INS [dm6]	A	ACTCTTGTA	3.019e^-5	0.354	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6503420	3R_6503420_SNP [dm3] 3R_10677698_SNP [dm6]	C	T	3.020e^-5	0.354	UPSTREAM CG6465 DOWNSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	3.087e^-5	0.36	INTRON Octbeta3R
3R	5456756	3R_5456756_SNP [dm3] 3R_9631034_SNP [dm6]	C	T	3.121e^-5	0.36	UPSTREAM SpdS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	3.126e^-5	0.36	INTERGENIC
X	4438542	X_4438542_SNP [dm3] X_4544509_SNP [dm6]	A	T	3.206e^-5	0.364	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8129629	2R_8129629_SNP [dm3] 2R_12242124_SNP [dm6]	A	T	3.217e^-5	0.364	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	3.224e^-5	0.364	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2270506	3R_2270506_SNP [dm3] 3R_6444784_SNP [dm6]	C	T	3.240e^-5	0.364	UTR_3_PRIME gpp INTRON gpp
3R	6473405	3R_6473405_SNP [dm3] 3R_10647683_SNP [dm6]	G	C	3.301e^-5	0.364	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	16472530	3R_16472530_SNP [dm3] 3R_20646808_SNP [dm6]	A	G	3.416e^-5	0.364	SYNONYMOUS_CODING GluRIIE
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	3.425e^-5	0.364	INTRON Cad87A
2L	15200116	2L_15200116_SNP [dm3] 2L_15200116_SNP [dm6]	T	G	3.433e^-5	0.364	UTR_5_PRIME CG4168
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	3.433e^-5	0.364	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	3.450e^-5	0.364	INTERGENIC
2L	13886448	2L_13886448_SNP [dm3] 2L_13886448_SNP [dm6]	A	G	3.465e^-5	0.364	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	6640523	3R_6640523_SNP [dm3] 3R_10814801_SNP [dm6]	G	T	3.475e^-5	0.364	SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
3R	8120715	3R_8120715_SNP [dm3] 3R_12294993_SNP [dm6]	C	T	3.480e^-5	0.364	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7714489	3R_7714489_SNP [dm3] 3R_11888767_SNP [dm6]	G	C	3.494e^-5	0.364	NON_SYNONYMOUS_CODING CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14845602	3R_14845602_SNP [dm3] 3R_19019880_SNP [dm6]	G	A	3.548e^-5	0.364	UTR_3_PRIME gukh INTRON gukh
X	16032176	X_16032176_SNP [dm3] X_16138143_SNP [dm6]	C	T	3.566e^-5	0.364	INTRON disco-r
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	3.570e^-5	0.364	INTERGENIC
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	3.577e^-5	0.364	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	3.602e^-5	0.364	INTERGENIC
3R	16472573	3R_16472573_DEL [dm3] 3R_20646851_DEL [dm6]	TGAGTTT	AA	3.641e^-5	0.364	INTRON GluRIIE
3R	6498604	3R_6498604_SNP [dm3] 3R_10672882_SNP [dm6]	A	C	3.652e^-5	0.364	INTERGENIC
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	3.656e^-5	0.364	INTRON fru
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	3.664e^-5	0.364	INTRON CG18769 & 1 other
3L	6820480	3L_6820480_SNP [dm3] 3L_6827380_SNP [dm6]	G	C	3.665e^-5	0.364	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	3.683e^-5	0.364	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	6887659	2L_6887659_SNP [dm3] 2L_6887659_SNP [dm6]	T	C	3.689e^-5	0.364	INTRON Nlg2
X	4438098	X_4438098_SNP [dm3] X_4544065_SNP [dm6]	T	A	3.709e^-5	0.364	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	2323740	3R_2323740_SNP [dm3] 3R_6498018_SNP [dm6]	C	A	3.727e^-5	0.364	INTERGENIC
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	3.737e^-5	0.364	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2767568	3R_2767568_SNP [dm3] 3R_6941846_SNP [dm6]	C	T	3.768e^-5	0.364	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	3.777e^-5	0.364	INTRON Cad87A
X	8631644	X_8631644_SNP [dm3] X_8737611_SNP [dm6]	G	C	3.783e^-5	0.364	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2R	14158393	2R_14158393_SNP [dm3] 2R_18270888_SNP [dm6]	A	G	3.812e^-5	0.365	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	3.904e^-5	0.372	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
2L	12924149	2L_12924149_SNP [dm3] 2L_12924149_SNP [dm6]	A	G	3.938e^-5	0.372	INTRON ACXA	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	8089970	2R_8089970_SNP [dm3] 2R_12202465_SNP [dm6]	A	G	3.946e^-5	0.372	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11769295	2L_11769295_SNP [dm3] 2L_11769295_SNP [dm6]	G	C	4.030e^-5	0.378	INTERGENIC
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	4.107e^-5	0.381	INTRON kar	TF binding site mE1_TFBS_cad
X	4438551	X_4438551_SNP [dm3] X_4544518_SNP [dm6]	T	C	4.124e^-5	0.381	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13188049	3L_13188049_SNP [dm3] 3L_13194949_SNP [dm6]	C	A	4.136e^-5	0.381	INTERGENIC
3L	2365414	3L_2365414_SNP [dm3] 3L_2365414_SNP [dm6]	T	C	4.161e^-5	0.381	INTERGENIC
2L	11769282	2L_11769282_SNP [dm3] 2L_11769282_SNP [dm6]	A	T	4.162e^-5	0.381	INTERGENIC
3R	7724824	3R_7724824_SNP [dm3] 3R_11899102_SNP [dm6]	T	C	4.208e^-5	0.383	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8129551	2R_8129551_SNP [dm3] 2R_12242046_SNP [dm6]	C	A	4.278e^-5	0.388	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	8652977	3L_8652977_SNP [dm3] 3L_8659877_SNP [dm6]	T	A	4.358e^-5	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17016555	3L_17016555_SNP [dm3] 3L_17023455_SNP [dm6]	C	T	4.387e^-5	0.392	SYNONYMOUS_CODING a10 UPSTREAM CG6652 & 1 other
2L	11773290	2L_11773290_SNP [dm3] 2L_11773290_SNP [dm6]	G	A	4.392e^-5	0.392	INTERGENIC
X	2548398	X_2548398_SNP [dm3] X_2654365_SNP [dm6]	A	G	4.449e^-5	0.395	INTRON sgg
2L	11769298	2L_11769298_SNP [dm3] 2L_11769298_SNP [dm6]	T	A	4.485e^-5	0.395	INTERGENIC
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	4.496e^-5	0.395	INTRON sNPF
3R	6621658	3R_6621658_SNP [dm3] 3R_10795936_SNP [dm6]	T	C	4.502e^-5	0.395	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16473173	3R_16473173_SNP [dm3] 3R_20647451_SNP [dm6]	G	A	4.629e^-5	0.404	SYNONYMOUS_CODING GluRIIE
3R	23400680	3R_23400680_SNP [dm3] 3R_27574958_SNP [dm6]	T	A	4.663e^-5	0.404	INTRON wdb
3R	2968397	3R_2968397_SNP [dm3] 3R_7142675_SNP [dm6]	G	A	4.678e^-5	0.404	UPSTREAM CR42738 DOWNSTREAM Fer1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8785260	3R_8785260_SNP [dm3] 3R_12959538_SNP [dm6]	G	T	4.727e^-5	0.405	SYNONYMOUS_CODING grsm	TF binding site mE1_TFBS_cad
3L	8983021	3L_8983021_SNP [dm3] 3L_8989921_SNP [dm6]	G	C	4.729e^-5	0.405	DOWNSTREAM CG5068 & 1 other INTRON CG5280
3R	25831587	3R_25831587_SNP [dm3] 3R_30005865_SNP [dm6]	C	T	4.782e^-5	0.407	DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl
X	4438547	X_4438547_SNP [dm3] X_4544514_SNP [dm6]	A	G	4.820e^-5	0.407	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4021856	3R_4021856_SNP [dm3] 3R_8196134_SNP [dm6]	T	C	4.829e^-5	0.407	INTERGENIC
3R	6552411	3R_6552411_SNP [dm3] 3R_10726689_SNP [dm6]	G	A	4.856e^-5	0.407	INTERGENIC
2L	6887696	2L_6887696_SNP [dm3] 2L_6887696_SNP [dm6]	A	T	4.857e^-5	0.407	INTRON Nlg2
2R	8115953	2R_8115953_SNP [dm3] 2R_12228448_SNP [dm6]	A	T	5.057e^-5	0.418	INTRON CG8854
3R	14862843	3R_14862843_SNP [dm3] 3R_19037121_SNP [dm6]	T	C	5.065e^-5	0.418	INTRON CG6026
3R	6582569	3R_6582569_SNP [dm3] 3R_10756847_SNP [dm6]	A	T	5.101e^-5	0.418	SYNONYMOUS_CODING CG31272 EXON CR45015
3R	22299979	3R_22299979_SNP [dm3] 3R_26474257_SNP [dm6]	C	A	5.104e^-5	0.418	SYNONYMOUS_CODING plum
2R	12138504	2R_12138504_SNP [dm3] 2R_16250999_SNP [dm6]	T	G	5.165e^-5	0.418	INTRON CngA
2R	12138525	2R_12138525_SNP [dm3] 2R_16251020_SNP [dm6]	T	G	5.165e^-5	0.418	INTRON CngA
2R	8115932	2R_8115932_SNP [dm3] 2R_12228427_SNP [dm6]	C	G	5.179e^-5	0.418	INTRON CG8854
2L	8293220	2L_8293220_INS [dm3] 2L_8293220_INS [dm6]	A	AA	5.217e^-5	0.418	INTRON Btk29A
2R	8091687	2R_8091687_SNP [dm3] 2R_12204182_SNP [dm6]	A	G	5.250e^-5	0.418	INTERGENIC
2R	12138487	2R_12138487_SNP [dm3] 2R_16250982_SNP [dm6]	C	T	5.262e^-5	0.418	INTRON CngA
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	5.283e^-5	0.418	INTRON VGlut
3R	7988098	3R_7988098_SNP [dm3] 3R_12162376_SNP [dm6]	G	T	5.298e^-5	0.418	DOWNSTREAM Cpn INTERGENIC
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	5.337e^-5	0.418	INTRON CR44941
2L	15734454	2L_15734454_SNP [dm3] 2L_15734454_SNP [dm6]	T	C	5.364e^-5	0.418	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	5.383e^-5	0.418	SYNONYMOUS_CODING Best2
2L	15554157	2L_15554157_SNP [dm3] 2L_15554157_SNP [dm6]	T	G	5.387e^-5	0.418	INTRON kek3
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	5.426e^-5	0.418	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19013660	3L_19013660_SNP [dm3] 3L_19020560_SNP [dm6]	G	C	5.446e^-5	0.418	INTRON nkd
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	5.449e^-5	0.418	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	17066909	3R_17066909_SNP [dm3] 3R_21241187_SNP [dm6]	G	A	5.486e^-5	0.418	INTERGENIC	regulatory region REDfly_CRMs
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	5.492e^-5	0.418	INTRON Cad87A
3R	6552403	3R_6552403_SNP [dm3] 3R_10726681_SNP [dm6]	C	A	5.505e^-5	0.418	INTERGENIC
3R	20338209	3R_20338209_DEL [dm3] 3R_24512487_DEL [dm6]	GGTG	G	5.521e^-5	0.418	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2	TF binding site BDTNP1_TFBS_dl
3R	6550535	3R_6550535_SNP [dm3] 3R_10724813_SNP [dm6]	T	C	5.549e^-5	0.418	INTERGENIC
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	5.592e^-5	0.418	INTRON Cad87A
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	5.606e^-5	0.418	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	7945470	3R_7945470_SNP [dm3] 3R_12119748_SNP [dm6]	T	C	5.675e^-5	0.418	INTERGENIC
3R	6602101	3R_6602101_SNP [dm3] 3R_10776379_SNP [dm6]	G	A	5.679e^-5	0.418	INTRON CG45076 & 2 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	5.706e^-5	0.418	INTERGENIC
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	5.718e^-5	0.418	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	3305394	2R_3305394_SNP [dm3] 2R_7417889_SNP [dm6]	T	C	5.723e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	6216385	3R_6216385_SNP [dm3] 3R_10390663_SNP [dm6]	G	A	5.733e^-5	0.418	INTRON cwo
3L	2796940	3L_2796940_SNP [dm3] 3L_2796940_SNP [dm6]	A	T	5.744e^-5	0.418	INTRON CG43444
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	5.779e^-5	0.418	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1630958	2L_1630958_SNP [dm3] 2L_1630958_SNP [dm6]	T	C	5.784e^-5	0.418	INTERGENIC
X	16032164	X_16032164_SNP [dm3] X_16138131_SNP [dm6]	A	C	5.836e^-5	0.418	INTRON disco-r
2L	6887541	2L_6887541_SNP [dm3] 2L_6887541_SNP [dm6]	T	G	5.853e^-5	0.418	INTRON Nlg2
3R	6279808	3R_6279808_SNP [dm3] 3R_10454086_SNP [dm6]	T	C	5.863e^-5	0.418	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	6639347	3R_6639347_SNP [dm3] 3R_10813625_SNP [dm6]	C	A	5.866e^-5	0.418	NON_SYNONYMOUS_CODING CG14693 UTR_5_PRIME CG14693 DOWNSTREAM CG14693 INTRON CG14693
3R	7732659	3R_7732659_SNP [dm3] 3R_11906937_SNP [dm6]	A	G	5.948e^-5	0.418	INTRON Cad87A
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	5.950e^-5	0.418	INTRON Prosap
3R	16473179	3R_16473179_SNP [dm3] 3R_20647457_SNP [dm6]	T	G	5.968e^-5	0.418	SYNONYMOUS_CODING GluRIIE
2R	17065643	2R_17065643_SNP [dm3] 2R_21178138_SNP [dm6]	T	G	5.971e^-5	0.418	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	5.977e^-5	0.418	DOWNSTREAM CG18109 INTERGENIC
3L	3261013	3L_3261013_DEL [dm3] 3L_3261013_DEL [dm6]	ATT	G	6.023e^-5	0.418	INTRON ckd
2R	8129543	2R_8129543_INS [dm3] 2R_12242038_INS [dm6]	T	TA	6.071e^-5	0.418	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	7712259	3R_7712259_SNP [dm3] 3R_11886537_SNP [dm6]	T	A	6.072e^-5	0.418	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	15734545	2L_15734545_SNP [dm3] 2L_15734545_SNP [dm6]	T	A	6.087e^-5	0.418	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12138512	2R_12138512_DEL [dm3] 2R_16251007_DEL [dm6]	TT	T	6.098e^-5	0.418	INTRON CngA
3R	7761421	3R_7761421_DEL [dm3] 3R_11935699_DEL [dm6]	AGCATTTT	A	6.122e^-5	0.418	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	6.166e^-5	0.418	INTERGENIC
3R	6457491	3R_6457491_SNP [dm3] 3R_10631769_SNP [dm6]	A	G	6.172e^-5	0.418	INTRON hth	TF binding site mE1_TFBS_cad
3L	13952149	3L_13952149_SNP [dm3] 3L_13959049_SNP [dm6]	T	G	6.179e^-5	0.418	INTRON CG32137
2L	13108885	2L_13108885_SNP [dm3] 2L_13108885_SNP [dm6]	T	G	6.210e^-5	0.418	INTRON CG5142
2L	8405883	2L_8405883_SNP [dm3] 2L_8405883_SNP [dm6]	C	T	6.215e^-5	0.418	INTRON emb	TF binding site mE1_TFBS_sens
3R	10138971	3R_10138971_SNP [dm3] 3R_14313249_SNP [dm6]	G	A	6.241e^-5	0.418	SYNONYMOUS_CODING CG31321
3R	6550478	3R_6550478_SNP [dm3] 3R_10724756_SNP [dm6]	T	A	6.270e^-5	0.418	INTERGENIC
X	4438053	X_4438053_SNP [dm3] X_4544020_SNP [dm6]	T	C	6.285e^-5	0.418	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	14862787	3R_14862787_SNP [dm3] 3R_19037065_SNP [dm6]	T	C	6.372e^-5	0.421	INTRON CG6026	TF binding site mE1_TFBS_inv
2L	15766178	2L_15766178_SNP [dm3] 2L_15766178_SNP [dm6]	A	T	6.374e^-5	0.421	UTR_3_PRIME CG3793 & 1 other DOWNSTREAM wek & 1 other
3R	7633242	3R_7633242_SNP [dm3] 3R_11807520_SNP [dm6]	A	G	6.445e^-5	0.424	UPSTREAM ClC-a INTRON ClC-a
3L	2604424	3L_2604424_SNP [dm3] 3L_2604424_SNP [dm6]	G	T	6.496e^-5	0.426	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5866870	3L_5866870_SNP [dm3] 3L_5873770_SNP [dm6]	T	A	6.521e^-5	0.426	NON_SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
2R	8129513	2R_8129513_SNP [dm3] 2R_12242008_SNP [dm6]	T	C	6.550e^-5	0.426	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	6.562e^-5	0.426	INTRON Octbeta2R
3L	13188177	3L_13188177_SNP [dm3] 3L_13195077_SNP [dm6]	T	G	6.598e^-5	0.427	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7746981	3R_7746981_SNP [dm3] 3R_11921259_SNP [dm6]	C	T	6.668e^-5	0.427	INTRON Cad87A
3R	6545300	3R_6545300_SNP [dm3] 3R_10719578_SNP [dm6]	C	T	6.693e^-5	0.427	INTERGENIC
3R	6547438	3R_6547438_SNP [dm3] 3R_10721716_SNP [dm6]	T	A	6.751e^-5	0.427	INTERGENIC
3R	7712533	3R_7712533_SNP [dm3] 3R_11886811_SNP [dm6]	G	T	6.759e^-5	0.427	NON_SYNONYMOUS_CODING mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	6.761e^-5	0.427	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17065435	2R_17065435_SNP [dm3] 2R_21177930_SNP [dm6]	G	A	6.766e^-5	0.427	SYNONYMOUS_CODING CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
3R	7945237	3R_7945237_DEL [dm3] 3R_12119515_DEL [dm6]	AATCGAA	A	6.782e^-5	0.427	INTERGENIC
2L	16382849	2L_16382849_SNP [dm3] 2L_16382849_SNP [dm6]	C	T	6.803e^-5	0.427	INTERGENIC
3L	6820495	3L_6820495_SNP [dm3] 3L_6827395_SNP [dm6]	T	C	6.811e^-5	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19270834	2L_19270834_SNP [dm3] 2L_19270834_SNP [dm6]	T	A	6.854e^-5	0.428	INTRON CR44190
3R	12712308	3R_12712308_SNP [dm3] 3R_16886586_SNP [dm6]	T	G	6.891e^-5	0.428	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	12474580	2R_12474580_SNP [dm3] 2R_16587075_SNP [dm6]	T	G	6.896e^-5	0.428	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	6718719	3R_6718719_SNP [dm3] 3R_10892997_SNP [dm6]	G	T	6.907e^-5	0.428	NON_SYNONYMOUS_CODING CG6621 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8116019	2R_8116019_DEL [dm3] 2R_12228514_DEL [dm6]	TATTCGATTGACTT...	T	6.945e^-5	0.428	INTRON CG8854
3R	20610723	3R_20610723_SNP [dm3] 3R_24785001_SNP [dm6]	C	A	6.958e^-5	0.428	UTR_3_PRIME CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad
3R	2462126	3R_2462126_SNP [dm3] 3R_6636404_SNP [dm6]	G	T	7.010e^-5	0.428	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11769351	2L_11769351_SNP [dm3] 2L_11769351_SNP [dm6]	T	A	7.043e^-5	0.428	INTERGENIC
2L	11769368	2L_11769368_SNP [dm3] 2L_11769368_SNP [dm6]	T	C	7.043e^-5	0.428	INTERGENIC
3R	6545219	3R_6545219_SNP [dm3] 3R_10719497_SNP [dm6]	C	A	7.061e^-5	0.428	INTERGENIC
X	4438549	X_4438549_SNP [dm3] X_4544516_SNP [dm6]	C	A	7.074e^-5	0.428	DOWNSTREAM Usf & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8129546	2R_8129546_SNP [dm3] 2R_12242041_SNP [dm6]	C	T	7.174e^-5	0.43	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	7.178e^-5	0.43	INTRON Fhos
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	7.213e^-5	0.43	INTRON nAChRalpha3
3R	9811583	3R_9811583_SNP [dm3] 3R_13985861_SNP [dm6]	C	A	7.216e^-5	0.43	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8032185	3L_8032185_SNP [dm3] 3L_8039085_SNP [dm6]	G	A	7.222e^-5	0.43	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21775757	3L_21775757_SNP [dm3] 3L_21782657_SNP [dm6]	G	A	7.276e^-5	0.432	INTERGENIC
3L	11166443	3L_11166443_SNP [dm3] 3L_11173343_SNP [dm6]	A	T	7.340e^-5	0.433	UPSTREAM CG14142 DOWNSTREAM CG7616 INTERGENIC
2L	15531442	2L_15531442_SNP [dm3] 2L_15531442_SNP [dm6]	T	C	7.360e^-5	0.433	INTERGENIC
3L	18300087	3L_18300087_SNP [dm3] 3L_18306987_SNP [dm6]	C	T	7.363e^-5	0.433	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15734499	2L_15734499_SNP [dm3] 2L_15734499_SNP [dm6]	C	A	7.434e^-5	0.436	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	16541045	3L_16541045_SNP [dm3] 3L_16547945_SNP [dm6]	G	A	7.476e^-5	0.437	INTERGENIC
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	7.517e^-5	0.437	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	7.517e^-5	0.437	INTRON NaPi-T
3R	7732676	3R_7732676_SNP [dm3] 3R_11906954_SNP [dm6]	A	G	7.545e^-5	0.437	INTRON Cad87A
3R	7729408	3R_7729408_SNP [dm3] 3R_11903686_SNP [dm6]	T	C	7.596e^-5	0.437	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6545224	3R_6545224_SNP [dm3] 3R_10719502_SNP [dm6]	C	A	7.600e^-5	0.437	INTERGENIC
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	7.667e^-5	0.437	INTRON kek3
3R	2936284	3R_2936284_SNP [dm3] 3R_7110562_SNP [dm6]	G	T	7.710e^-5	0.437	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	2955457	3R_2955457_SNP [dm3] 3R_7129735_SNP [dm6]	T	A	7.714e^-5	0.437	UPSTREAM tRNA:CR31494 DOWNSTREAM CR42875 INTRON CG31248
3R	7735910	3R_7735910_SNP [dm3] 3R_11910188_SNP [dm6]	G	T	7.715e^-5	0.437	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2953841	3R_2953841_SNP [dm3] 3R_7128119_SNP [dm6]	A	C	7.726e^-5	0.437	UPSTREAM CG10068 EXON CR42875	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7724819	3R_7724819_SNP [dm3] 3R_11899097_SNP [dm6]	T	C	7.736e^-5	0.437	NON_SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3831916	3R_3831916_SNP [dm3] 3R_8006194_SNP [dm6]	A	C	7.752e^-5	0.437	DOWNSTREAM CG2698 INTRON CG2767
3R	19893967	3R_19893967_SNP [dm3] 3R_24068245_SNP [dm6]	C	T	7.780e^-5	0.437	INTRON 4EHP
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	7.857e^-5	0.437	INTRON Octbeta3R
3R	8532736	3R_8532736_SNP [dm3] 3R_12707014_SNP [dm6]	A	T	7.863e^-5	0.437	SPLICE_SITE_REGION mus308 INTRON mus308	TF binding site mE1_TFBS_cad
2R	12474609	2R_12474609_SNP [dm3] 2R_16587104_SNP [dm6]	T	C	7.869e^-5	0.437	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	7.900e^-5	0.437	INTERGENIC
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	7.912e^-5	0.437	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	7.914e^-5	0.437	INTRON nAChRalpha3
3L	19096368	3L_19096368_SNP [dm3] 3L_19103268_SNP [dm6]	A	G	7.971e^-5	0.437	INTERGENIC
3R	2165538	3R_2165538_SNP [dm3] 3R_6339816_SNP [dm6]	C	A	7.974e^-5	0.437	UPSTREAM Osi20 INTERGENIC	TF binding site mE1_TFBS_cad
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	7.993e^-5	0.437	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
3R	2957745	3R_2957745_SNP [dm3] 3R_7132023_SNP [dm6]	T	C	8.054e^-5	0.437	INTRON CG31493
3L	14645765	3L_14645765_SNP [dm3] 3L_14652665_SNP [dm6]	T	G	8.086e^-5	0.437	INTRON dlp
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	8.102e^-5	0.437	INTRON fru
2L	3181169	2L_3181169_SNP [dm3] 2L_3181169_SNP [dm6]	C	A	8.111e^-5	0.437	INTRON CG34393
3R	6474667	3R_6474667_SNP [dm3] 3R_10648945_SNP [dm6]	G	T	8.124e^-5	0.437	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	8793021	3R_8793021_SNP [dm3] 3R_12967299_SNP [dm6]	C	T	8.133e^-5	0.437	NON_SYNONYMOUS_CODING grsm UTR_5_PRIME CG14384 UPSTREAM CG14384 DOWNSTREAM CG7381
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	8.216e^-5	0.438	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	9379448	3R_9379448_INS [dm3] 3R_13553726_INS [dm6]	G	GG	8.222e^-5	0.438	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12102713	2L_12102713_SNP [dm3] 2L_12102713_SNP [dm6]	G	C	8.234e^-5	0.438	SYNONYMOUS_CODING Patsas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	6644254	3R_6644254_SNP [dm3] 3R_10818532_SNP [dm6]	G	C	8.269e^-5	0.438	INTERGENIC	TF binding site mE1_TFBS_sens
3R	6285094	3R_6285094_SNP [dm3] 3R_10459372_SNP [dm6]	G	A	8.276e^-5	0.438	INTERGENIC
3R	19893962	3R_19893962_SNP [dm3] 3R_24068240_SNP [dm6]	G	A	8.317e^-5	0.438	INTRON 4EHP
2R	12138528	2R_12138528_SNP [dm3] 2R_16251023_SNP [dm6]	C	T	8.335e^-5	0.438	INTRON CngA
X	14304239	X_14304239_SNP [dm3] X_14410206_SNP [dm6]	A	G	8.369e^-5	0.438	INTRON dpr8
X	14304243	X_14304243_SNP [dm3] X_14410210_SNP [dm6]	A	G	8.369e^-5	0.438	INTRON dpr8
3R	2175409	3R_2175409_SNP [dm3] 3R_6349687_SNP [dm6]	T	C	8.387e^-5	0.438	NON_SYNONYMOUS_CODING Hr83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	13188108	3L_13188108_SNP [dm3] 3L_13195008_SNP [dm6]	G	C	8.453e^-5	0.44	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9489682	X_9489682_SNP [dm3] X_9595649_SNP [dm6]	C	G	8.470e^-5	0.44	DOWNSTREAM CR45543 INTERGENIC
2R	3305395	2R_3305395_SNP [dm3] 2R_7417890_SNP [dm6]	C	T	8.512e^-5	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9388886	2L_9388886_SNP [dm3] 2L_9388886_SNP [dm6]	C	T	8.559e^-5	0.441	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20028157	2L_20028157_DEL [dm3] 2L_20028157_DEL [dm6]	CTTCTCCTTGAAATCCGGAC...	C	8.690e^-5	0.441	UTR_5_PRIME sNPF	TF binding site mE1_TFBS_cnc
3L	13188174	3L_13188174_SNP [dm3] 3L_13195074_SNP [dm6]	C	G	8.732e^-5	0.441	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8208587	X_8208587_SNP [dm3] X_8314554_SNP [dm6]	T	G	8.753e^-5	0.441	INTRON nAChRalpha3
3R	9773399	3R_9773399_SNP [dm3] 3R_13947677_SNP [dm6]	A	T	8.753e^-5	0.441	UPSTREAM CG31517 INTERGENIC
3L	9856857	3L_9856857_SNP [dm3] 3L_9863757_SNP [dm6]	A	T	8.784e^-5	0.441	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12578644	2L_12578644_SNP [dm3] 2L_12578644_SNP [dm6]	T	C	8.830e^-5	0.441	INTERGENIC
2R	8116039	2R_8116039_DEL [dm3] 2R_12228534_DEL [dm6]	TC	T	8.881e^-5	0.441	INTRON CG8854
3R	6752135	3R_6752135_SNP [dm3] 3R_10926413_SNP [dm6]	C	A	8.900e^-5	0.441	INTERGENIC
2L	15100085	2L_15100085_SNP [dm3] 2L_15100085_SNP [dm6]	C	A	8.907e^-5	0.441	INTERGENIC
3R	6514843	3R_6514843_SNP [dm3] 3R_10689121_SNP [dm6]	T	A	8.918e^-5	0.441	INTRON Skeletor	TF binding site mE1_TFBS_cad
2L	11769349	2L_11769349_SNP [dm3] 2L_11769349_SNP [dm6]	A	G	8.942e^-5	0.441	INTERGENIC
2L	11769408	2L_11769408_SNP [dm3] 2L_11769408_SNP [dm6]	A	G	8.942e^-5	0.441	INTERGENIC
3R	13756070	3R_13756070_SNP [dm3] 3R_17930348_SNP [dm6]	G	C	8.956e^-5	0.441	INTRON cpo
3R	14706015	3R_14706015_SNP [dm3] 3R_18880293_SNP [dm6]	G	A	9.045e^-5	0.441	INTERGENIC
3R	17066917	3R_17066917_SNP [dm3] 3R_21241195_SNP [dm6]	G	A	9.087e^-5	0.441	INTERGENIC	regulatory region REDfly_CRMs
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	9.106e^-5	0.441	UPSTREAM CR45374 INTERGENIC
2L	4299087	2L_4299087_SNP [dm3] 2L_4299087_SNP [dm6]	A	G	9.113e^-5	0.441	SYNONYMOUS_CODING tutl
3L	19937743	3L_19937743_DEL [dm3] 3L_19944643_DEL [dm6]	AAAAT	A	9.125e^-5	0.441	INTRON Ac76E
3R	7945166	3R_7945166_SNP [dm3] 3R_12119444_SNP [dm6]	C	T	9.141e^-5	0.441	INTERGENIC
3R	7757160	3R_7757160_SNP [dm3] 3R_11931438_SNP [dm6]	A	G	9.166e^-5	0.441	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	5429827	3R_5429827_SNP [dm3] 3R_9604105_SNP [dm6]	G	A	9.171e^-5	0.441	INTRON CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	11768616	2L_11768616_SNP [dm3] 2L_11768616_SNP [dm6]	T	C	9.174e^-5	0.441	INTERGENIC
2L	11769146	2L_11769146_SNP [dm3] 2L_11769146_SNP [dm6]	A	G	9.174e^-5	0.441	INTERGENIC
2L	11769469	2L_11769469_SNP [dm3] 2L_11769469_SNP [dm6]	T	A	9.211e^-5	0.441	INTERGENIC
2L	1412244	2L_1412244_SNP [dm3] 2L_1412244_SNP [dm6]	T	C	9.213e^-5	0.441	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	9.224e^-5	0.441	SYNONYMOUS_CODING beat-Vc
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	9.262e^-5	0.441	INTERGENIC
2R	12474615	2R_12474615_SNP [dm3] 2R_16587110_SNP [dm6]	T	A	9.280e^-5	0.441	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2L	14032524	2L_14032524_SNP [dm3] 2L_14032524_SNP [dm6]	T	C	9.282e^-5	0.441	UPSTREAM CG18095 EXON CR45284
2L	15552136	2L_15552136_SNP [dm3] 2L_15552136_SNP [dm6]	G	A	9.282e^-5	0.441	UPSTREAM kek3 DOWNSTREAM CG15256 INTERGENIC
3L	2716165	3L_2716165_SNP [dm3] 3L_2716165_SNP [dm6]	A	T	9.284e^-5	0.441	INTERGENIC
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	9.315e^-5	0.441	INTRON ClC-a
3L	1720402	3L_1720402_SNP [dm3] 3L_1720402_SNP [dm6]	A	G	9.399e^-5	0.441	DOWNSTREAM CG18171 INTRON drpr
2L	15492878	2L_15492878_SNP [dm3] 2L_15492878_SNP [dm6]	G	A	9.399e^-5	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2604371	3L_2604371_SNP [dm3] 3L_2604371_SNP [dm6]	G	A	9.408e^-5	0.441	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3215634	2L_3215634_SNP [dm3] 2L_3215634_SNP [dm6]	G	T	9.413e^-5	0.441	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3260995	3L_3260995_SNP [dm3] 3L_3260995_SNP [dm6]	C	T	9.441e^-5	0.441	INTRON ckd
3R	16472789	3R_16472789_SNP [dm3] 3R_20647067_SNP [dm6]	T	A	9.497e^-5	0.441	INTRON GluRIIE
3R	16472815	3R_16472815_SNP [dm3] 3R_20647093_SNP [dm6]	A	T	9.497e^-5	0.441	INTRON GluRIIE
3R	9599423	3R_9599423_SNP [dm3] 3R_13773701_SNP [dm6]	T	C	9.538e^-5	0.441	INTRON CG9297
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	9.540e^-5	0.441	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	9.544e^-5	0.441	INTRON GC1
3R	6545163	3R_6545163_INS [dm3] 3R_10719441_INS [dm6]	G	TTGACCTTT	9.569e^-5	0.441	INTERGENIC
3L	16260801	3L_16260801_SNP [dm3] 3L_16267701_SNP [dm6]	C	T	9.583e^-5	0.441	SYNONYMOUS_CODING CG4950	TF binding site mE1_TFBS_sens
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	9.623e^-5	0.441	DOWNSTREAM CG33098 INTRON CG34402
X	9210430	X_9210430_SNP [dm3] X_9316397_SNP [dm6]	G	A	9.682e^-5	0.441	INTERGENIC
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	9.701e^-5	0.441	INTERGENIC
2R	10755270	2R_10755270_SNP [dm3] 2R_14867765_SNP [dm6]	A	T	9.715e^-5	0.441	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	9.761e^-5	0.441	INTRON fru
3L	21595047	3L_21595047_SNP [dm3] 3L_21601947_SNP [dm6]	C	G	9.838e^-5	0.441	INTRON TfAP-2	TF binding site mE1_TFBS_cad
2L	11191025	2L_11191025_SNP [dm3] 2L_11191025_SNP [dm6]	A	G	9.864e^-5	0.441	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7633251	3R_7633251_SNP [dm3] 3R_11807529_SNP [dm6]	T	A	9.871e^-5	0.441	UPSTREAM ClC-a INTRON ClC-a
2L	11769105	2L_11769105_SNP [dm3] 2L_11769105_SNP [dm6]	T	C	9.889e^-5	0.441	INTERGENIC
3L	2089118	3L_2089118_SNP [dm3] 3L_2089118_SNP [dm6]	T	G	9.911e^-5	0.441	UTR_3_PRIME sls INTRON sls EXON CR42860
2L	15734451	2L_15734451_SNP [dm3] 2L_15734451_SNP [dm6]	T	A	9.921e^-5	0.441	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	19270886	2L_19270886_SNP [dm3] 2L_19270886_SNP [dm6]	G	T	9.931e^-5	0.441	INTRON CR44190
2L	8405703	2L_8405703_SNP [dm3] 2L_8405703_SNP [dm6]	G	C	9.946e^-5	0.441	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
3R	17066924	3R_17066924_INS [dm3] 3R_21241202_INS [dm6]	C	CCG	9.967e^-5	0.441	INTERGENIC	regulatory region REDfly_CRMs
3L	8984876	3L_8984876_INS [dm3] 3L_8991776_INS [dm6]	A	ATATTGATTG	9.970e^-5	0.441	INTRON smg
3R	6547465	3R_6547465_SNP [dm3] 3R_10721743_SNP [dm6]	T	C	9.975e^-5	0.441	INTERGENIC
3R	7713209	3R_7713209_SNP [dm3] 3R_11887487_SNP [dm6]	T	G	9.984e^-5	0.441	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	2267129	3R_2267129_SNP [dm3] 3R_6441407_SNP [dm6]	G	T	1.000e^-4	0.441	NON_SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6643225	3R_6643225_SNP [dm3] 3R_10817503_SNP [dm6]	T	A	1.011e^-4	0.442	DOWNSTREAM CG4089 INTERGENIC
3R	2556890	3R_2556890_SNP [dm3] 3R_6731168_SNP [dm6]	A	G	1.012e^-4	0.442	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	1.013e^-4	0.442	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	7732618	3R_7732618_SNP [dm3] 3R_11906896_SNP [dm6]	G	C	1.013e^-4	0.442	INTRON Cad87A
3R	19588225	3R_19588225_SNP [dm3] 3R_23762503_SNP [dm6]	G	A	1.014e^-4	0.442	INTRON CG10217	TF binding site mE1_TFBS_sens
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	1.018e^-4	0.443	INTRON capu	TF binding site mE1_TFBS_bab1
3R	17066921	3R_17066921_SNP [dm3] 3R_21241199_SNP [dm6]	A	G	1.021e^-4	0.443	INTERGENIC	regulatory region REDfly_CRMs
3L	13188178	3L_13188178_SNP [dm3] 3L_13195078_SNP [dm6]	G	T	1.023e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2944832	3R_2944832_SNP [dm3] 3R_7119110_SNP [dm6]	A	G	1.028e^-4	0.444	INTRON Alh
2R	13499724	2R_13499724_SNP [dm3] 2R_17612219_SNP [dm6]	A	T	1.029e^-4	0.444	INTRON CG10936
3R	2961363	3R_2961363_SNP [dm3] 3R_7135641_SNP [dm6]	G	A	1.031e^-4	0.444	UPSTREAM Fer1 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl
2L	886010	2L_886010_SNP [dm3] 2L_886010_SNP [dm6]	G	A	1.034e^-4	0.444	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12138539	2R_12138539_SNP [dm3] 2R_16251034_SNP [dm6]	T	G	1.037e^-4	0.444	INTRON CngA
3R	7633235	3R_7633235_SNP [dm3] 3R_11807513_SNP [dm6]	G	A	1.045e^-4	0.444	UPSTREAM ClC-a INTRON ClC-a
3R	6678823	3R_6678823_SNP [dm3] 3R_10853101_SNP [dm6]	G	T	1.047e^-4	0.444	SYNONYMOUS_CODING CG4565 DOWNSTREAM CG6567	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	12138527	2R_12138527_SNP [dm3] 2R_16251022_SNP [dm6]	A	C	1.048e^-4	0.444	INTRON CngA
3R	14863394	3R_14863394_SNP [dm3] 3R_19037672_SNP [dm6]	T	G	1.049e^-4	0.444	INTRON CG6026
3L	3447091	3L_3447091_SNP [dm3] 3L_3447091_SNP [dm6]	C	T	1.051e^-4	0.444	INTRON eIF5B
3R	6563404	3R_6563404_SNP [dm3] 3R_10737682_SNP [dm6]	G	A	1.052e^-4	0.444	UTR_3_PRIME TkR86C
X	11392750	X_11392750_SNP [dm3] X_11498717_SNP [dm6]	C	T	1.060e^-4	0.446	INTRON Drak
2L	18145657	2L_18145657_SNP [dm3] 2L_18145657_SNP [dm6]	C	T	1.060e^-4	0.446	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	8866359	3R_8866359_SNP [dm3] 3R_13040637_SNP [dm6]	G	A	1.063e^-4	0.446	SYNONYMOUS_CODING snk UTR_3_PRIME snk DOWNSTREAM CG11668	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4438150	X_4438150_SNP [dm3] X_4544117_SNP [dm6]	T	C	1.072e^-4	0.446	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3R	2562456	3R_2562456_SNP [dm3] 3R_6736734_SNP [dm6]	G	T	1.073e^-4	0.446	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14645751	3L_14645751_SNP [dm3] 3L_14652651_SNP [dm6]	T	A	1.075e^-4	0.446	INTRON dlp
3R	2438271	3R_2438271_SNP [dm3] 3R_6612549_SNP [dm6]	A	T	1.075e^-4	0.446	INTERGENIC	transposable element FlyBase
2R	8109725	2R_8109725_SNP [dm3] 2R_12222220_SNP [dm6]	G	C	1.078e^-4	0.446	INTERGENIC
3R	8560942	3R_8560942_MNP [dm3] 3R_12735220_MNP [dm6]	AAG	TTT	1.081e^-4	0.446	INTERGENIC
2R	12138541	2R_12138541_SNP [dm3] 2R_16251036_SNP [dm6]	G	T	1.082e^-4	0.446	INTRON CngA
2R	17065649	2R_17065649_SNP [dm3] 2R_21178144_SNP [dm6]	A	G	1.083e^-4	0.446	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2578296	3R_2578296_SNP [dm3] 3R_6752574_SNP [dm6]	C	T	1.085e^-4	0.446	DOWNSTREAM zen INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	1.094e^-4	0.447	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	2562012	3R_2562012_SNP [dm3] 3R_6736290_SNP [dm6]	T	G	1.095e^-4	0.447	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	1.098e^-4	0.447	SPLICE_SITE_REGION mbc INTRON mbc
3R	24870629	3R_24870629_SNP [dm3] 3R_29044907_SNP [dm6]	G	A	1.098e^-4	0.447	SYNONYMOUS_CODING Pkc98E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6537530	3R_6537530_SNP [dm3] 3R_10711808_SNP [dm6]	T	C	1.099e^-4	0.447	UPSTREAM CG14689 INTERGENIC
3R	7724875	3R_7724875_SNP [dm3] 3R_11899153_SNP [dm6]	A	G	1.107e^-4	0.447	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307
2L	13822668	2L_13822668_SNP [dm3] 2L_13822668_SNP [dm6]	T	C	1.107e^-4	0.447	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7464793	3L_7464793_SNP [dm3] 3L_7471693_SNP [dm6]	T	C	1.108e^-4	0.447	SYNONYMOUS_CODING CG8541	TF binding site mE1_TFBS_cad
2L	12283222	2L_12283222_SNP [dm3] 2L_12283222_SNP [dm6]	C	T	1.109e^-4	0.447	INTRON aret
3R	2461409	3R_2461409_SNP [dm3] 3R_6635687_SNP [dm6]	G	A	1.113e^-4	0.447	INTERGENIC
3L	5874460	3L_5874460_SNP [dm3] 3L_5881360_SNP [dm6]	C	G	1.115e^-4	0.447	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15552172	2L_15552172_SNP [dm3] 2L_15552172_SNP [dm6]	A	C	1.117e^-4	0.447	UPSTREAM kek3 DOWNSTREAM CG15256 INTERGENIC
3R	19592587	3R_19592587_SNP [dm3] 3R_23766865_SNP [dm6]	A	G	1.119e^-4	0.447	SYNONYMOUS_CODING CG10214 UPSTREAM CG10375 DOWNSTREAM Lsd-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	9793552	3L_9793552_SNP [dm3] 3L_9800452_SNP [dm6]	T	C	1.121e^-4	0.447	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
3R	7763496	3R_7763496_SNP [dm3] 3R_11937774_SNP [dm6]	G	A	1.124e^-4	0.447	INTRON Cad87A
3R	10138896	3R_10138896_SNP [dm3] 3R_14313174_SNP [dm6]	A	G	1.127e^-4	0.448	SYNONYMOUS_CODING CG31321
3L	20901821	3L_20901821_SNP [dm3] 3L_20908721_SNP [dm6]	T	C	1.132e^-4	0.448	INTERGENIC
3R	12709049	3R_12709049_SNP [dm3] 3R_16883327_SNP [dm6]	G	A	1.136e^-4	0.448	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	9093722	X_9093722_SNP [dm3] X_9199689_SNP [dm6]	G	A	1.143e^-4	0.448	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20034659	2L_20034659_SNP [dm3] 2L_20034659_SNP [dm6]	G	T	1.147e^-4	0.448	INTRON sNPF
X	16032361	X_16032361_SNP [dm3] X_16138328_SNP [dm6]	C	T	1.150e^-4	0.448	INTRON disco-r
3R	6594904	3R_6594904_SNP [dm3] 3R_10769182_SNP [dm6]	A	T	1.151e^-4	0.448	SYNONYMOUS_CODING CG45076 DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
3L	5952159	3L_5952159_SNP [dm3] 3L_5959059_SNP [dm6]	T	C	1.152e^-4	0.448	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6157701	2L_6157701_SNP [dm3] 2L_6157701_SNP [dm6]	T	C	1.155e^-4	0.448	INTERGENIC
2R	6051793	2R_6051793_SNP [dm3] 2R_10164288_SNP [dm6]	G	T	1.155e^-4	0.448	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2L	12573938	2L_12573938_SNP [dm3] 2L_12573938_SNP [dm6]	A	G	1.156e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12923702	2L_12923702_SNP [dm3] 2L_12923702_SNP [dm6]	A	T	1.156e^-4	0.448	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	2480135	3L_2480135_SNP [dm3] 3L_2480135_SNP [dm6]	T	C	1.156e^-4	0.448	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
2L	13822849	2L_13822849_SNP [dm3] 2L_13822849_SNP [dm6]	G	T	1.158e^-4	0.448	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21244230	3R_21244230_SNP [dm3] 3R_25418508_SNP [dm6]	T	A	1.161e^-4	0.448	INTRON Fur1
2R	8129532	2R_8129532_SNP [dm3] 2R_12242027_SNP [dm6]	G	A	1.169e^-4	0.45	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	7713210	3R_7713210_DEL [dm3] 3R_11887488_DEL [dm6]	TC	T	1.172e^-4	0.45	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	7718083	3R_7718083_SNP [dm3] 3R_11892361_SNP [dm6]	C	T	1.174e^-4	0.45	UTR_3_PRIME CG31368 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	1.177e^-4	0.45	INTERGENIC
X	6712031	X_6712031_SNP [dm3] X_6817998_SNP [dm6]	G	T	1.180e^-4	0.45	DOWNSTREAM Nf-YC INTRON iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17027568	X_17027568_SNP [dm3] X_17133535_SNP [dm6]	A	T	1.181e^-4	0.45	UPSTREAM CG5004 INTRON CG5004
3R	4024183	3R_4024183_SNP [dm3] 3R_8198461_SNP [dm6]	A	G	1.184e^-4	0.45	UPSTREAM CR43302 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	7747776	3R_7747776_SNP [dm3] 3R_11922054_SNP [dm6]	G	A	1.185e^-4	0.45	INTRON Cad87A
2L	11553642	2L_11553642_SNP [dm3] 2L_11553642_SNP [dm6]	C	T	1.189e^-4	0.451	INTERGENIC
3L	17643644	3L_17643644_SNP [dm3] 3L_17650544_SNP [dm6]	C	G	1.193e^-4	0.451	UTR_5_PRIME Krn INTRON Ndfip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17873923	2R_17873923_SNP [dm3] 2R_21986418_SNP [dm6]	C	G	1.195e^-4	0.451	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2502695	3R_2502695_SNP [dm3] 3R_6676973_SNP [dm6]	C	T	1.198e^-4	0.451	INTRON lab	TF binding site mE1_TFBS_cad
3R	5281732	3R_5281732_SNP [dm3] 3R_9456010_SNP [dm6]	T	C	1.204e^-4	0.451	NON_SYNONYMOUS_CODING GstZ1 DOWNSTREAM ps & 1 other	TF binding site BDTNP1_TFBS_dl
3R	6546240	3R_6546240_SNP [dm3] 3R_10720518_SNP [dm6]	T	C	1.205e^-4	0.451	INTERGENIC
2R	20011337	2R_20011337_SNP [dm3] 2R_24123814_SNP [dm6]	T	C	1.205e^-4	0.451	SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18050267	2L_18050267_DEL [dm3] 2L_18050267_DEL [dm6]	AGCCCGTCGCA...	A	1.213e^-4	0.453	INTRON rdo
2R	20213798	2R_20213798_SNP [dm3] 2R_24326275_SNP [dm6]	A	C	1.215e^-4	0.453	INTRON CR44810
2L	20066236	2L_20066236_SNP [dm3] 2L_20066236_SNP [dm6]	A	T	1.216e^-4	0.453	UPSTREAM bwa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16016832	2L_16016832_SNP [dm3] 2L_16016832_SNP [dm6]	C	A	1.224e^-4	0.454	INTRON beat-Ic
3R	13020256	3R_13020256_SNP [dm3] 3R_17194534_SNP [dm6]	G	C	1.230e^-4	0.455	INTRON Mur89F
X	18345931	X_18345931_DEL [dm3] X_18451898_DEL [dm6]	TCCATTT	T	1.231e^-4	0.455	INTRON CG32547
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	1.235e^-4	0.455	INTRON ckd
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	1.235e^-4	0.455	INTRON timeout & 2 others
X	3462162	X_3462162_SNP [dm3] X_3568129_SNP [dm6]	T	C	1.236e^-4	0.455	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4286065	X_4286065_SNP [dm3] X_4392032_SNP [dm6]	G	T	1.238e^-4	0.455	INTRON CR32773
2R	5038366	2R_5038366_SNP [dm3] 2R_9150861_SNP [dm6]	C	G	1.253e^-4	0.457	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
2L	1605309	2L_1605309_SNP [dm3] 2L_1605309_SNP [dm6]	C	A	1.259e^-4	0.457	SYNONYMOUS_CODING haf INTRON CG31935 & 1 other
3R	7945098	3R_7945098_SNP [dm3] 3R_12119376_SNP [dm6]	G	A	1.263e^-4	0.457	INTERGENIC
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	1.264e^-4	0.457	INTRON Cad87A
2L	13840204	2L_13840204_SNP [dm3] 2L_13840204_SNP [dm6]	C	T	1.266e^-4	0.457	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11179072	3L_11179072_SNP [dm3] 3L_11185972_SNP [dm6]	A	T	1.266e^-4	0.457	INTRON GlcAT-P
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	1.267e^-4	0.457	UTR_3_PRIME plum
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.267e^-4	0.457	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3L	452700	3L_452700_SNP [dm3] 3L_452700_SNP [dm6]	C	T	1.277e^-4	0.457	INTRON klar
2L	19270823	2L_19270823_SNP [dm3] 2L_19270823_SNP [dm6]	C	G	1.291e^-4	0.457	INTRON CR44190
2L	6825380	2L_6825380_SNP [dm3] 2L_6825380_SNP [dm6]	T	A	1.292e^-4	0.457	INTRON sens-2
3L	18271525	3L_18271525_SNP [dm3] 3L_18278425_SNP [dm6]	T	A	1.296e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	7732716	3R_7732716_SNP [dm3] 3R_11906994_SNP [dm6]	A	T	1.302e^-4	0.457	INTRON Cad87A
2L	3002976	2L_3002976_SNP [dm3] 2L_3002976_SNP [dm6]	C	T	1.303e^-4	0.457	INTRON CG17265
3L	11043479	3L_11043479_DEL [dm3] 3L_11050379_DEL [dm6]	AA	A	1.305e^-4	0.457	UTR_5_PRIME CG43693 UPSTREAM CR45119 INTRON CG43693
2R	15320320	2R_15320320_SNP [dm3] 2R_19432815_SNP [dm6]	T	A	1.305e^-4	0.457	SYNONYMOUS_CODING Fak INTRON Fak
3R	6547403	3R_6547403_SNP [dm3] 3R_10721681_SNP [dm6]	T	A	1.307e^-4	0.457	INTERGENIC
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	1.308e^-4	0.457	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14980339	3L_14980339_SNP [dm3] 3L_14987239_SNP [dm6]	C	T	1.309e^-4	0.457	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8151411	3R_8151411_SNP [dm3] 3R_12325689_SNP [dm6]	A	G	1.309e^-4	0.457	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	2987318	3R_2987318_SNP [dm3] 3R_7161596_SNP [dm6]	G	A	1.310e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7945858	3R_7945858_SNP [dm3] 3R_12120136_SNP [dm6]	A	T	1.310e^-4	0.457	INTERGENIC
2R	6078901	2R_6078901_SNP [dm3] 2R_10191396_SNP [dm6]	C	T	1.315e^-4	0.457	INTRON KCNQ
X	11995847	X_11995847_SNP [dm3] X_12101814_SNP [dm6]	T	C	1.322e^-4	0.457	INTRON CR43960 & 1 other
3R	7757573	3R_7757573_SNP [dm3] 3R_11931851_SNP [dm6]	C	G	1.324e^-4	0.457	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	1.324e^-4	0.457	INTRON grsm
X	3451899	X_3451899_INS [dm3] X_3557866_INS [dm6]	A	AA	1.325e^-4	0.457	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_da
3R	2492744	3R_2492744_SNP [dm3] 3R_6667022_SNP [dm6]	G	A	1.331e^-4	0.457	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8651707	3L_8651707_SNP [dm3] 3L_8658607_SNP [dm6]	C	G	1.332e^-4	0.457	INTERGENIC
2L	20033971	2L_20033971_SNP [dm3] 2L_20033971_SNP [dm6]	G	A	1.333e^-4	0.457	INTRON sNPF
2L	20034823	2L_20034823_SNP [dm3] 2L_20034823_SNP [dm6]	C	G	1.333e^-4	0.457	INTRON sNPF
2L	20038743	2L_20038743_SNP [dm3] 2L_20038743_SNP [dm6]	T	A	1.333e^-4	0.457	INTRON sNPF
2L	20041009	2L_20041009_SNP [dm3] 2L_20041009_SNP [dm6]	T	C	1.333e^-4	0.457	INTRON sNPF
2L	20041346	2L_20041346_SNP [dm3] 2L_20041346_SNP [dm6]	G	A	1.333e^-4	0.457	INTRON sNPF
3R	6547416	3R_6547416_SNP [dm3] 3R_10721694_SNP [dm6]	T	C	1.334e^-4	0.457	INTERGENIC
X	5404350	X_5404350_SNP [dm3] X_5510317_SNP [dm6]	C	T	1.336e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1816657	3R_1816657_SNP [dm3] 3R_5990935_SNP [dm6]	A	G	1.337e^-4	0.457	DOWNSTREAM CR44927 INTERGENIC
3R	2672894	3R_2672894_SNP [dm3] 3R_6847172_SNP [dm6]	C	A	1.340e^-4	0.457	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20034226	2L_20034226_SNP [dm3] 2L_20034226_SNP [dm6]	T	G	1.344e^-4	0.457	INTRON sNPF
3R	8646044	3R_8646044_SNP [dm3] 3R_12820322_SNP [dm6]	C	A	1.352e^-4	0.457	INTERGENIC
3R	22935801	3R_22935801_SNP [dm3] 3R_27110079_SNP [dm6]	T	A	1.353e^-4	0.457	INTRON gb EXON CR45209
2R	1837772	2R_1837772_SNP [dm3] 2R_5950267_SNP [dm6]	C	G	1.357e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19206458	3R_19206458_INS [dm3] 3R_23380736_INS [dm6]	C	CCATGAC	1.358e^-4	0.457	CODON_INSERTION CG4393	TF binding site mE1_TFBS_chinmo
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	1.358e^-4	0.457	INTERGENIC
2L	1609975	2L_1609975_SNP [dm3] 2L_1609975_SNP [dm6]	C	G	1.359e^-4	0.457	NON_SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad
3L	7847218	3L_7847218_SNP [dm3] 3L_7854118_SNP [dm6]	C	G	1.361e^-4	0.457	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	1.363e^-4	0.457	INTRON dpr10
2L	20073185	2L_20073185_SNP [dm3] 2L_20073185_SNP [dm6]	G	C	1.363e^-4	0.457	UTR_3_PRIME bwa UPSTREAM CG10730 DOWNSTREAM pr INTRON bwa
3R	8163613	3R_8163613_SNP [dm3] 3R_12337891_SNP [dm6]	A	C	1.364e^-4	0.457	INTRON CR44941
2L	6306101	2L_6306101_SNP [dm3] 2L_6306101_SNP [dm6]	A	C	1.368e^-4	0.457	INTRON Ddr
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	1.379e^-4	0.46	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	1.380e^-4	0.46	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
2L	16002975	2L_16002975_SNP [dm3] 2L_16002975_SNP [dm6]	G	C	1.395e^-4	0.462	DOWNSTREAM CG34167 & 2 others INTRON beat-Ic
2L	20033297	2L_20033297_SNP [dm3] 2L_20033297_SNP [dm6]	T	C	1.396e^-4	0.462	INTRON sNPF
3R	14503317	3R_14503317_SNP [dm3] 3R_18677595_SNP [dm6]	G	T	1.401e^-4	0.462	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	17065662	2R_17065662_SNP [dm3] 2R_21178157_SNP [dm6]	C	A	1.403e^-4	0.462	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	18983725	3R_18983725_SNP [dm3] 3R_23158003_SNP [dm6]	T	A	1.403e^-4	0.462	UPSTREAM unk DOWNSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	7387140	3L_7387140_SNP [dm3] 3L_7394040_SNP [dm6]	C	A	1.406e^-4	0.462	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	1.408e^-4	0.462	INTRON CG14395
3R	22941877	3R_22941877_SNP [dm3] 3R_27116155_SNP [dm6]	A	G	1.408e^-4	0.462	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11166446	3L_11166446_SNP [dm3] 3L_11173346_SNP [dm6]	G	C	1.416e^-4	0.463	UPSTREAM CG14142 DOWNSTREAM CG7616 INTERGENIC
2L	17214127	2L_17214127_SNP [dm3] 2L_17214127_SNP [dm6]	A	C	1.420e^-4	0.463	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19270825	2L_19270825_SNP [dm3] 2L_19270825_SNP [dm6]	A	G	1.421e^-4	0.463	INTRON CR44190
3R	8867170	3R_8867170_SNP [dm3] 3R_13041448_SNP [dm6]	T	C	1.421e^-4	0.463	NON_SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3R	7768629	3R_7768629_SNP [dm3] 3R_11942907_SNP [dm6]	C	T	1.428e^-4	0.463	INTRON Cad87A
3R	7633270	3R_7633270_SNP [dm3] 3R_11807548_SNP [dm6]	A	G	1.429e^-4	0.463	UPSTREAM ClC-a INTRON ClC-a
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	1.430e^-4	0.463	INTERGENIC
3L	3620098	3L_3620098_DEL [dm3] 3L_3620098_DEL [dm6]	AA	A	1.430e^-4	0.463	DOWNSTREAM CG14974 INTERGENIC
3L	18780066	3L_18780066_SNP [dm3] 3L_18786966_SNP [dm6]	T	C	1.434e^-4	0.463	INTRON ftz-f1
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	1.436e^-4	0.463	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
3R	6276824	3R_6276824_SNP [dm3] 3R_10451102_SNP [dm6]	T	G	1.440e^-4	0.463	INTERGENIC
2L	13819846	2L_13819846_SNP [dm3] 2L_13819846_SNP [dm6]	A	G	1.441e^-4	0.463	DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	2950189	3R_2950189_SNP [dm3] 3R_7124467_SNP [dm6]	C	T	1.446e^-4	0.463	UPSTREAM CG10098 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6547412	3R_6547412_SNP [dm3] 3R_10721690_SNP [dm6]	T	C	1.448e^-4	0.463	INTERGENIC
3L	9593466	3L_9593466_SNP [dm3] 3L_9600366_SNP [dm6]	T	C	1.453e^-4	0.463	DOWNSTREAM CG3088 & 1 other INTERGENIC
2L	13822658	2L_13822658_SNP [dm3] 2L_13822658_SNP [dm6]	G	A	1.454e^-4	0.463	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13822626	2L_13822626_SNP [dm3] 2L_13822626_SNP [dm6]	A	G	1.455e^-4	0.463	INTRON b	TF binding site mE1_TFBS_cad
2L	13822642	2L_13822642_INS [dm3] 2L_13822642_INS [dm6]	A	AG	1.455e^-4	0.463	INTRON b	TF binding site mE1_TFBS_cad
3L	14142807	3L_14142807_SNP [dm3] 3L_14149707_SNP [dm6]	A	T	1.457e^-4	0.463	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	11512963	2R_11512963_SNP [dm3] 2R_15625458_SNP [dm6]	G	A	1.462e^-4	0.464	INTRON CG42524
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	1.464e^-4	0.464	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	4789096	2L_4789096_DEL [dm3] 2L_4789096_DEL [dm6]	AGGTATA	A	1.467e^-4	0.464	INTRON CG15630
2L	1176899	2L_1176899_SNP [dm3] 2L_1176899_SNP [dm6]	G	A	1.468e^-4	0.464	UPSTREAM CG4896 INTRON CG4887	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8225954	X_8225954_DEL [dm3] X_8331921_DEL [dm6]	TGT	T	1.475e^-4	0.464	INTRON nAChRalpha3
3R	6480812	3R_6480812_SNP [dm3] 3R_10655090_SNP [dm6]	A	C	1.476e^-4	0.464	INTERGENIC
3R	25732008	3R_25732008_SNP [dm3] 3R_29906286_SNP [dm6]	G	A	1.478e^-4	0.464	SYNONYMOUS_CODING CG15515
3L	1725692	3L_1725692_SNP [dm3] 3L_1725692_SNP [dm6]	A	T	1.490e^-4	0.467	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	8810453	3R_8810453_SNP [dm3] 3R_12984731_SNP [dm6]	C	A	1.494e^-4	0.467	UTR_3_PRIME Paip2 DOWNSTREAM Paip2
X	4285574	X_4285574_SNP [dm3] X_4391541_SNP [dm6]	G	T	1.495e^-4	0.467	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8616225	2R_8616225_SNP [dm3] 2R_12728720_SNP [dm6]	C	T	1.509e^-4	0.467	INTRON CG42663
3L	21803775	3L_21803775_SNP [dm3] 3L_21810675_SNP [dm6]	G	T	1.509e^-4	0.467	INTRON eg	TF binding site mE1_TFBS_sens
2L	2919910	2L_2919910_SNP [dm3] 2L_2919910_SNP [dm6]	C	T	1.511e^-4	0.467	INTRON lilli
2R	11056734	2R_11056734_SNP [dm3] 2R_15169229_SNP [dm6]	C	T	1.511e^-4	0.467	INTRON igl
2L	20017099	2L_20017099_SNP [dm3] 2L_20017099_SNP [dm6]	T	G	1.519e^-4	0.467	UTR_5_PRIME CG43861
2R	9583793	2R_9583793_SNP [dm3] 2R_13696288_SNP [dm6]	T	G	1.519e^-4	0.467	INTRON fas
3R	19893952	3R_19893952_SNP [dm3] 3R_24068230_SNP [dm6]	C	A	1.520e^-4	0.467	INTRON 4EHP
X	5404373	X_5404373_SNP [dm3] X_5510340_SNP [dm6]	A	T	1.527e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7215693	X_7215693_SNP [dm3] X_7321660_SNP [dm6]	G	A	1.528e^-4	0.467	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6217447	3R_6217447_SNP [dm3] 3R_10391725_SNP [dm6]	A	G	1.535e^-4	0.467	INTRON cwo
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	1.535e^-4	0.467	INTRON timeout & 2 others
3R	6550485	3R_6550485_SNP [dm3] 3R_10724763_SNP [dm6]	T	A	1.538e^-4	0.467	INTERGENIC
2R	8087757	2R_8087757_SNP [dm3] 2R_12200252_SNP [dm6]	A	G	1.541e^-4	0.467	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	17067275	3R_17067275_SNP [dm3] 3R_21241553_SNP [dm6]	C	T	1.550e^-4	0.467	INTERGENIC	regulatory region REDfly_CRMs
3L	1869756	3L_1869756_SNP [dm3] 3L_1869756_SNP [dm6]	G	T	1.556e^-4	0.467	UPSTREAM CG13924 DOWNSTREAM CG12025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8225959	X_8225959_SNP [dm3] X_8331926_SNP [dm6]	T	G	1.557e^-4	0.467	INTRON nAChRalpha3
2L	16803260	2L_16803260_SNP [dm3] 2L_16803260_SNP [dm6]	A	T	1.559e^-4	0.467	INTRON CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8779105	3R_8779105_SNP [dm3] 3R_12953383_SNP [dm6]	A	T	1.561e^-4	0.467	INTRON grsm
2R	7072427	2R_7072427_SNP [dm3] 2R_11184922_SNP [dm6]	G	A	1.570e^-4	0.467	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8872581	3R_8872581_SNP [dm3] 3R_13046859_SNP [dm6]	G	T	1.575e^-4	0.467	SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	7732699	3R_7732699_SNP [dm3] 3R_11906977_SNP [dm6]	C	T	1.578e^-4	0.467	INTRON Cad87A
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	1.581e^-4	0.467	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	2458757	3R_2458757_SNP [dm3] 3R_6633035_SNP [dm6]	T	C	1.584e^-4	0.467	INTERGENIC
2L	18074864	2L_18074864_SNP [dm3] 2L_18074864_SNP [dm6]	G	A	1.585e^-4	0.467	INTERGENIC
2L	18074913	2L_18074913_SNP [dm3] 2L_18074913_SNP [dm6]	T	A	1.585e^-4	0.467	INTERGENIC
3R	7713017	3R_7713017_SNP [dm3] 3R_11887295_SNP [dm6]	C	T	1.588e^-4	0.467	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	7760213	3R_7760213_SNP [dm3] 3R_11934491_SNP [dm6]	C	A	1.594e^-4	0.467	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13822639	2L_13822639_SNP [dm3] 2L_13822639_SNP [dm6]	C	A	1.596e^-4	0.467	INTRON b	TF binding site mE1_TFBS_cad
2R	8616222	2R_8616222_INS [dm3] 2R_12728717_INS [dm6]	C	CG	1.597e^-4	0.467	INTRON CG42663
3L	12487143	3L_12487143_SNP [dm3] 3L_12494043_SNP [dm6]	T	G	1.599e^-4	0.467	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	7871318	X_7871318_SNP [dm3] X_7977285_SNP [dm6]	C	T	1.602e^-4	0.467	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6288211	2L_6288211_SNP [dm3] 2L_6288211_SNP [dm6]	G	A	1.606e^-4	0.467	INTRON Ddr	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_twi
2R	17065670	2R_17065670_SNP [dm3] 2R_21178165_SNP [dm6]	C	T	1.607e^-4	0.467	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20022479	2L_20022479_SNP [dm3] 2L_20022479_SNP [dm6]	G	A	1.610e^-4	0.467	INTERGENIC
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	1.612e^-4	0.467	INTRON CG7985
2R	3305403	2R_3305403_SNP [dm3] 2R_7417898_SNP [dm6]	T	G	1.614e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	1.617e^-4	0.467	INTRON CadN
2L	4867669	2L_4867669_SNP [dm3] 2L_4867669_SNP [dm6]	T	G	1.619e^-4	0.467	INTRON pog
3L	1875598	3L_1875598_SNP [dm3] 3L_1875598_SNP [dm6]	C	G	1.620e^-4	0.467	DOWNSTREAM CG13937 INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.621e^-4	0.467	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3L	16191411	3L_16191411_SNP [dm3] 3L_16198311_SNP [dm6]	C	T	1.621e^-4	0.467	SYNONYMOUS_CODING CG33687 UPSTREAM CG33688
2L	14419968	2L_14419968_SNP [dm3] 2L_14419968_SNP [dm6]	C	A	1.622e^-4	0.467	INTERGENIC
3L	13654966	3L_13654966_SNP [dm3] 3L_13661866_SNP [dm6]	T	C	1.622e^-4	0.467	INTRON bru-3
2R	4728708	2R_4728708_SNP [dm3] 2R_8841203_SNP [dm6]	A	C	1.623e^-4	0.467	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4473878	3L_4473878_SNP [dm3] 3L_4473878_SNP [dm6]	C	G	1.625e^-4	0.467	SYNONYMOUS_CODING CG11349	TF binding site mE1_TFBS_chinmo
3R	10119687	3R_10119687_DEL [dm3] 3R_14293965_DEL [dm6]	TTT	T	1.627e^-4	0.467	INTRON CG12207
3R	8987480	3R_8987480_SNP [dm3] 3R_13161758_SNP [dm6]	G	C	1.633e^-4	0.467	INTRON timeout
3L	13464214	3L_13464214_SNP [dm3] 3L_13471114_SNP [dm6]	T	G	1.634e^-4	0.467	INTRON CG10089	TF binding site mE1_TFBS_cad
X	17027566	X_17027566_SNP [dm3] X_17133533_SNP [dm6]	A	G	1.636e^-4	0.467	UPSTREAM CG5004 INTRON CG5004
3R	8976262	3R_8976262_SNP [dm3] 3R_13150540_SNP [dm6]	A	T	1.640e^-4	0.467	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	1.640e^-4	0.467	INTRON b	TF binding site mE1_TFBS_cad
3R	14845422	3R_14845422_SNP [dm3] 3R_19019700_SNP [dm6]	G	A	1.640e^-4	0.467	UTR_3_PRIME gukh INTRON gukh
2R	8137315	2R_8137315_SNP [dm3] 2R_12249810_SNP [dm6]	G	A	1.642e^-4	0.467	INTERGENIC
3R	16504012	3R_16504012_SNP [dm3] 3R_20678290_SNP [dm6]	G	T	1.645e^-4	0.467	UPSTREAM CG4000 DOWNSTREAM CR45024 EXON CR43452	TF binding site mE1_TFBS_HSA
3L	9807790	3L_9807790_SNP [dm3] 3L_9814690_SNP [dm6]	G	T	1.646e^-4	0.467	INTRON CG43897
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	1.647e^-4	0.467	INTRON timeout & 2 others
3R	8559802	3R_8559802_SNP [dm3] 3R_12734080_SNP [dm6]	C	A	1.647e^-4	0.467	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8873750	3R_8873750_SNP [dm3] 3R_13048028_SNP [dm6]	A	G	1.648e^-4	0.467	SYNONYMOUS_CODING CG31157 DOWNSTREAM Hsc70-2
3R	13081797	3R_13081797_SNP [dm3] 3R_17256075_SNP [dm6]	C	T	1.651e^-4	0.467	INTRON beat-IIb
3R	13445629	3R_13445629_SNP [dm3] 3R_17619907_SNP [dm6]	T	A	1.654e^-4	0.467	UPSTREAM tRNA:P:90Cb DOWNSTREAM tRNA:A:90C & 2 others INTERGENIC
2L	8293252	2L_8293252_SNP [dm3] 2L_8293252_SNP [dm6]	T	C	1.655e^-4	0.467	INTRON Btk29A
2L	15461665	2L_15461665_SNP [dm3] 2L_15461665_SNP [dm6]	A	G	1.655e^-4	0.467	INTERGENIC
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	1.655e^-4	0.467	UTR_3_PRIME bol
2L	11768688	2L_11768688_SNP [dm3] 2L_11768688_SNP [dm6]	T	C	1.656e^-4	0.467	INTERGENIC
3R	8343766	3R_8343766_SNP [dm3] 3R_12518044_SNP [dm6]	G	A	1.663e^-4	0.467	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	4078907	3L_4078907_SNP [dm3] 3L_4078907_SNP [dm6]	T	A	1.664e^-4	0.467	INTRON Gad1
3R	15059757	3R_15059757_SNP [dm3] 3R_19234035_SNP [dm6]	G	A	1.668e^-4	0.467	SYNONYMOUS_CODING unc79
3R	7722247	3R_7722247_SNP [dm3] 3R_11896525_SNP [dm6]	C	T	1.668e^-4	0.467	SYNONYMOUS_CODING Cad87A
3R	2671168	3R_2671168_SNP [dm3] 3R_6845446_SNP [dm6]	A	G	1.670e^-4	0.467	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	13639794	3L_13639794_SNP [dm3] 3L_13646694_SNP [dm6]	C	T	1.673e^-4	0.467	INTRON bru-3
2L	19270827	2L_19270827_INS [dm3] 2L_19270827_INS [dm6]	A	AGTATATCCC	1.677e^-4	0.467	INTRON CR44190
2L	19270831	2L_19270831_SNP [dm3] 2L_19270831_SNP [dm6]	A	C	1.677e^-4	0.467	INTRON CR44190
2R	12138495	2R_12138495_SNP [dm3] 2R_16250990_SNP [dm6]	G	T	1.678e^-4	0.467	INTRON CngA
3L	14142782	3L_14142782_SNP [dm3] 3L_14149682_SNP [dm6]	T	A	1.680e^-4	0.467	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9594364	3L_9594364_SNP [dm3] 3L_9601264_SNP [dm6]	T	A	1.680e^-4	0.467	SYNONYMOUS_CODING CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
2L	15553402	2L_15553402_SNP [dm3] 2L_15553402_SNP [dm6]	T	A	1.683e^-4	0.467	INTRON kek3
X	11227495	X_11227495_SNP [dm3] X_11333462_SNP [dm6]	C	T	1.690e^-4	0.467	SYNONYMOUS_CODING CG1657 DOWNSTREAM Kap3	TF binding site mE1_TFBS_cad
X	6575773	X_6575773_SNP [dm3] X_6681740_SNP [dm6]	T	C	1.694e^-4	0.467	UTR_3_PRIME l_1_G0255 UPSTREAM CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13822634	2L_13822634_SNP [dm3] 2L_13822634_SNP [dm6]	T	G	1.699e^-4	0.467	INTRON b	TF binding site mE1_TFBS_cad
3R	6051124	3R_6051124_SNP [dm3] 3R_10225402_SNP [dm6]	T	C	1.700e^-4	0.467	UTR_3_PRIME CG34107 UPSTREAM CG42795 & 1 other
2L	8654661	2L_8654661_DEL [dm3] 2L_8654661_DEL [dm6]	AGGACACTA	A	1.703e^-4	0.467	INTRON Sema-1a
3R	21468319	3R_21468319_SNP [dm3] 3R_25642597_SNP [dm6]	T	C	1.707e^-4	0.467	INTRON jigr1
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	1.707e^-4	0.467	INTRON CG10089
2R	19501790	2R_19501790_SNP [dm3] 2R_23614267_SNP [dm6]	G	T	1.710e^-4	0.467	INTRON CG17664 & 1 other
2L	5622031	2L_5622031_SNP [dm3] 2L_5622031_SNP [dm6]	C	T	1.712e^-4	0.467	NON_SYNONYMOUS_CODING Cyp6a16
3R	18436126	3R_18436126_SNP [dm3] 3R_22610404_SNP [dm6]	G	A	1.713e^-4	0.467	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19894758	3R_19894758_SNP [dm3] 3R_24069036_SNP [dm6]	T	G	1.714e^-4	0.467	INTRON 4EHP
2L	19270817	2L_19270817_SNP [dm3] 2L_19270817_SNP [dm6]	A	T	1.714e^-4	0.467	INTRON CR44190
2L	15735004	2L_15735004_SNP [dm3] 2L_15735004_SNP [dm6]	A	T	1.717e^-4	0.467	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17065650	2R_17065650_SNP [dm3] 2R_21178145_SNP [dm6]	G	T	1.720e^-4	0.467	UPSTREAM Pu INTRON Pu & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15767315	3R_15767315_DEL [dm3] 3R_19941593_DEL [dm6]	AAG	A	1.724e^-4	0.467	INTRON Hs6st
3R	18863778	3R_18863778_SNP [dm3] 3R_23038056_SNP [dm6]	G	A	1.724e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17066770	3R_17066770_SNP [dm3] 3R_21241048_SNP [dm6]	G	A	1.726e^-4	0.467	INTERGENIC	regulatory region REDfly_CRMs
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	1.735e^-4	0.468	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15059745	3R_15059745_SNP [dm3] 3R_19234023_SNP [dm6]	A	G	1.735e^-4	0.468	SYNONYMOUS_CODING unc79
3R	12723393	3R_12723393_SNP [dm3] 3R_16897671_SNP [dm6]	T	A	1.738e^-4	0.468	INTRON iab-8 EXON CR43617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8771965	3R_8771965_SNP [dm3] 3R_12946243_SNP [dm6]	C	A	1.741e^-4	0.469	INTERGENIC
2R	17203637	2R_17203637_SNP [dm3] 2R_21316132_SNP [dm6]	G	T	1.745e^-4	0.469	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15531471	2L_15531471_INS [dm3] 2L_15531471_INS [dm6]	A	AAAA	1.758e^-4	0.47	INTERGENIC
2L	19270814	2L_19270814_SNP [dm3] 2L_19270814_SNP [dm6]	G	T	1.760e^-4	0.47	INTRON CR44190
3L	12163798	3L_12163798_SNP [dm3] 3L_12170698_SNP [dm6]	A	G	1.765e^-4	0.47	INTRON Rh7
2R	9971868	2R_9971868_SNP [dm3] 2R_14084363_SNP [dm6]	T	G	1.766e^-4	0.47	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	8851578	3L_8851578_SNP [dm3] 3L_8858478_SNP [dm6]	C	T	1.776e^-4	0.47	INTRON dally
2L	3598767	2L_3598767_SNP [dm3] 2L_3598767_SNP [dm6]	T	A	1.777e^-4	0.47	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4755311	3L_4755311_SNP [dm3] 3L_4755311_SNP [dm6]	A	G	1.778e^-4	0.47	UPSTREAM CR43881 INTRON RhoGEF64C
X	7213615	X_7213615_SNP [dm3] X_7319582_SNP [dm6]	T	C	1.781e^-4	0.47	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	8129613	2R_8129613_SNP [dm3] 2R_12242108_SNP [dm6]	T	A	1.782e^-4	0.47	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	13976280	3L_13976280_SNP [dm3] 3L_13983180_SNP [dm6]	G	A	1.787e^-4	0.47	SYNONYMOUS_CODING CG17364
3R	13980959	3R_13980959_SNP [dm3] 3R_18155237_SNP [dm6]	G	A	1.787e^-4	0.47	INTERGENIC
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	1.789e^-4	0.47	INTRON grsm
3R	8120454	3R_8120454_SNP [dm3] 3R_12294732_SNP [dm6]	G	T	1.790e^-4	0.47	SYNONYMOUS_CODING svp INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16035639	X_16035639_SNP [dm3] X_16141606_SNP [dm6]	A	G	1.791e^-4	0.47	INTRON disco-r
3L	9328572	3L_9328572_SNP [dm3] 3L_9335472_SNP [dm6]	C	T	1.796e^-4	0.47	UPSTREAM PGRP-LA INTRON PGRP-LA
3L	14645666	3L_14645666_SNP [dm3] 3L_14652566_SNP [dm6]	C	A	1.796e^-4	0.47	INTRON dlp
2R	6054668	2R_6054668_SNP [dm3] 2R_10167163_SNP [dm6]	A	G	1.796e^-4	0.47	INTRON KCNQ
3R	14864153	3R_14864153_SNP [dm3] 3R_19038431_SNP [dm6]	C	T	1.797e^-4	0.47	INTRON CG6026
X	17424992	X_17424992_SNP [dm3] X_17530959_SNP [dm6]	T	A	1.803e^-4	0.47	INTRON CG43658
3L	10609496	3L_10609496_DEL [dm3] 3L_10616396_DEL [dm6]	GTAATGGCTTGG...	A	1.805e^-4	0.47	INTERGENIC
2L	19406368	2L_19406368_SNP [dm3] 2L_19406368_SNP [dm6]	C	G	1.807e^-4	0.47	INTRON Pax
2L	15551964	2L_15551964_SNP [dm3] 2L_15551964_SNP [dm6]	C	A	1.811e^-4	0.47	UTR_3_PRIME CG15256 UPSTREAM kek3 DOWNSTREAM CG15256
3L	2429781	3L_2429781_SNP [dm3] 3L_2429781_SNP [dm6]	T	C	1.816e^-4	0.47	INTRON CG45186
2R	17781611	2R_17781611_DEL [dm3] 2R_21894106_DEL [dm6]	CA	C	1.816e^-4	0.47	INTRON Fili
3R	2097470	3R_2097470_SNP [dm3] 3R_6271748_SNP [dm6]	C	T	1.822e^-4	0.47	INTERGENIC
3R	2139675	3R_2139675_SNP [dm3] 3R_6313953_SNP [dm6]	C	T	1.822e^-4	0.47	INTRON Osi17
3R	2139682	3R_2139682_SNP [dm3] 3R_6313960_SNP [dm6]	G	T	1.822e^-4	0.47	INTRON Osi17
X	4285517	X_4285517_SNP [dm3] X_4391484_SNP [dm6]	G	T	1.827e^-4	0.47	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6473333	3R_6473333_SNP [dm3] 3R_10647611_SNP [dm6]	G	T	1.829e^-4	0.47	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	5198176	3R_5198176_SNP [dm3] 3R_9372454_SNP [dm6]	C	T	1.832e^-4	0.47	NON_SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
3R	7732631	3R_7732631_SNP [dm3] 3R_11906909_SNP [dm6]	T	G	1.835e^-4	0.47	INTRON Cad87A
2L	15553874	2L_15553874_SNP [dm3] 2L_15553874_SNP [dm6]	G	A	1.835e^-4	0.47	INTRON kek3
3L	2429856	3L_2429856_SNP [dm3] 3L_2429856_SNP [dm6]	T	C	1.835e^-4	0.47	INTRON CG45186
3L	11588249	3L_11588249_SNP [dm3] 3L_11595149_SNP [dm6]	A	T	1.837e^-4	0.47	INTERGENIC
2L	6495253	2L_6495253_SNP [dm3] 2L_6495253_SNP [dm6]	C	G	1.838e^-4	0.47	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2R	15172241	2R_15172241_SNP [dm3] 2R_19284736_SNP [dm6]	G	A	1.839e^-4	0.47	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	23802986	3R_23802986_SNP [dm3] 3R_27977264_SNP [dm6]	A	G	1.840e^-4	0.47	INTRON betaTub97EF
X	16882497	X_16882497_SNP [dm3] X_16988464_SNP [dm6]	C	A	1.849e^-4	0.471	INTRON CG45002
3R	16145866	3R_16145866_SNP [dm3] 3R_20320144_SNP [dm6]	A	T	1.854e^-4	0.472	INTRON CG42668
2R	8092449	2R_8092449_SNP [dm3] 2R_12204944_SNP [dm6]	T	A	1.860e^-4	0.472	INTERGENIC
X	14542870	X_14542870_SNP [dm3] X_14648837_SNP [dm6]	C	T	1.863e^-4	0.472	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	25192514	3R_25192514_SNP [dm3] 3R_29366792_SNP [dm6]	A	G	1.866e^-4	0.472	INTERGENIC
2L	14919072	2L_14919072_SNP [dm3] 2L_14919072_SNP [dm6]	C	T	1.866e^-4	0.472	INTRON CG42313
2L	15735038	2L_15735038_SNP [dm3] 2L_15735038_SNP [dm6]	A	T	1.872e^-4	0.473	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	1591829	3L_1591829_SNP [dm3] 3L_1591829_SNP [dm6]	C	T	1.874e^-4	0.473	INTRON CG13917
3R	14863091	3R_14863091_SNP [dm3] 3R_19037369_SNP [dm6]	A	T	1.886e^-4	0.475	INTRON CG6026
3L	3445803	3L_3445803_SNP [dm3] 3L_3445803_SNP [dm6]	G	C	1.889e^-4	0.476	INTRON eIF5B
3R	2818182	3R_2818182_SNP [dm3] 3R_6992460_SNP [dm6]	G	A	1.902e^-4	0.478	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13631604	3L_13631604_SNP [dm3] 3L_13638504_SNP [dm6]	T	G	1.908e^-4	0.479	INTRON bru-3
X	5950566	X_5950566_SNP [dm3] X_6056533_SNP [dm6]	T	C	1.908e^-4	0.479	INTRON CG5921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16335070	2L_16335070_SNP [dm3] 2L_16335070_SNP [dm6]	A	G	1.913e^-4	0.479	NON_SYNONYMOUS_CODING CG31817
3R	20906628	3R_20906628_SNP [dm3] 3R_25080906_SNP [dm6]	A	T	1.917e^-4	0.479	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	1.918e^-4	0.479	INTERGENIC
3R	8799967	3R_8799967_SNP [dm3] 3R_12974245_SNP [dm6]	C	T	1.926e^-4	0.48	INTRON CG7381
X	13326260	X_13326260_SNP [dm3] X_13432227_SNP [dm6]	A	C	1.927e^-4	0.48	INTERGENIC
3R	6273953	3R_6273953_SNP [dm3] 3R_10448231_SNP [dm6]	G	T	1.930e^-4	0.48	INTERGENIC
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	1.934e^-4	0.48	INTERGENIC
3R	11507619	3R_11507619_SNP [dm3] 3R_15681897_SNP [dm6]	A	C	1.935e^-4	0.48	INTRON pxb
3R	6648528	3R_6648528_SNP [dm3] 3R_10822806_SNP [dm6]	T	A	1.938e^-4	0.48	INTERGENIC
2L	19270845	2L_19270845_SNP [dm3] 2L_19270845_SNP [dm6]	A	G	1.943e^-4	0.481	INTRON CR44190
2L	19270917	2L_19270917_SNP [dm3] 2L_19270917_SNP [dm6]	T	G	1.957e^-4	0.484	INTRON CR44190
3L	2365433	3L_2365433_SNP [dm3] 3L_2365433_SNP [dm6]	T	C	1.968e^-4	0.486	INTERGENIC
3L	1875578	3L_1875578_SNP [dm3] 3L_1875578_SNP [dm6]	C	T	1.970e^-4	0.486	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25192528	3R_25192528_SNP [dm3] 3R_29366806_SNP [dm6]	C	A	1.979e^-4	0.487	INTERGENIC
3L	10397390	3L_10397390_SNP [dm3] 3L_10404290_SNP [dm6]	G	A	1.979e^-4	0.487	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14111073	X_14111073_SNP [dm3] X_14217040_SNP [dm6]	C	T	1.987e^-4	0.487	INTRON l_1_G0007
3L	9731081	3L_9731081_SNP [dm3] 3L_9737981_SNP [dm6]	G	A	1.987e^-4	0.487	INTRON CG42268
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	1.988e^-4	0.487	INTRON CR44320
2R	7072353	2R_7072353_SNP [dm3] 2R_11184848_SNP [dm6]	A	C	1.999e^-4	0.487	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3240566	3R_3240566_SNP [dm3] 3R_7414844_SNP [dm6]	A	C	2.001e^-4	0.487	INTERGENIC
3L	11179042	3L_11179042_SNP [dm3] 3L_11185942_SNP [dm6]	G	A	2.003e^-4	0.487	INTRON GlcAT-P
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	2.006e^-4	0.487	INTRON salm
3L	18191886	3L_18191886_SNP [dm3] 3L_18198786_SNP [dm6]	C	G	2.006e^-4	0.487	INTERGENIC
3R	8771941	3R_8771941_SNP [dm3] 3R_12946219_SNP [dm6]	G	A	2.008e^-4	0.487	INTERGENIC
3L	15777536	3L_15777536_SNP [dm3] 3L_15784436_SNP [dm6]	T	A	2.009e^-4	0.487	INTERGENIC
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	2.010e^-4	0.487	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2L	15553867	2L_15553867_SNP [dm3] 2L_15553867_SNP [dm6]	G	T	2.014e^-4	0.487	INTRON kek3
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	2.018e^-4	0.487	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	15777515	3L_15777515_SNP [dm3] 3L_15784415_SNP [dm6]	T	A	2.020e^-4	0.487	INTERGENIC
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	2.021e^-4	0.487	INTERGENIC
3R	6219236	3R_6219236_SNP [dm3] 3R_10393514_SNP [dm6]	G	A	2.025e^-4	0.488	INTRON cwo
3R	7983984	3R_7983984_SNP [dm3] 3R_12158262_SNP [dm6]	C	T	2.036e^-4	0.488	INTRON dpr15
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	2.037e^-4	0.488	INTERGENIC
3R	7990189	3R_7990189_SNP [dm3] 3R_12164467_SNP [dm6]	T	A	2.044e^-4	0.488	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5637646	3R_5637646_SNP [dm3] 3R_9811924_SNP [dm6]	G	A	2.045e^-4	0.488	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9594437	3L_9594437_SNP [dm3] 3L_9601337_SNP [dm6]	A	C	2.048e^-4	0.488	UPSTREAM CG3306 & 1 other DOWNSTREAM CG3222 INTERGENIC
3R	8877274	3R_8877274_SNP [dm3] 3R_13051552_SNP [dm6]	G	A	2.048e^-4	0.488	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8115935	2R_8115935_SNP [dm3] 2R_12228430_SNP [dm6]	C	A	2.052e^-4	0.488	INTRON CG8854
3R	14863586	3R_14863586_SNP [dm3] 3R_19037864_SNP [dm6]	C	T	2.056e^-4	0.488	INTRON CG6026
3L	14363131	3L_14363131_SNP [dm3] 3L_14370031_SNP [dm6]	G	C	2.060e^-4	0.488	UPSTREAM CG13481 INTERGENIC
3R	2273891	3R_2273891_SNP [dm3] 3R_6448169_SNP [dm6]	G	A	2.062e^-4	0.488	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6317125	2L_6317125_SNP [dm3] 2L_6317125_SNP [dm6]	A	C	2.066e^-4	0.488	INTRON Ddr
3L	9607372	3L_9607372_SNP [dm3] 3L_9614272_SNP [dm6]	A	T	2.066e^-4	0.488	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	6680870	2R_6680870_SNP [dm3] 2R_10793365_SNP [dm6]	A	T	2.068e^-4	0.488	DOWNSTREAM mthl13 INTRON CG33144
2L	451889	2L_451889_SNP [dm3] 2L_451889_SNP [dm6]	G	A	2.070e^-4	0.488	UPSTREAM crq INTRON crq	TF binding site mE1_TFBS_inv
3R	12712402	3R_12712402_SNP [dm3] 3R_16886680_SNP [dm6]	A	G	2.072e^-4	0.488	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	17341764	2R_17341764_SNP [dm3] 2R_21454259_SNP [dm6]	A	T	2.073e^-4	0.488	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	14975079	2L_14975079_SNP [dm3] 2L_14975079_SNP [dm6]	C	G	2.075e^-4	0.488	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16966284	2R_16966284_SNP [dm3] 2R_21078779_SNP [dm6]	A	T	2.078e^-4	0.488	INTRON Treh
2L	4407413	2L_4407413_SNP [dm3] 2L_4407413_SNP [dm6]	G	A	2.080e^-4	0.488	SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19459961	2L_19459961_SNP [dm3] 2L_19459961_SNP [dm6]	G	T	2.084e^-4	0.488	INTERGENIC
3R	25829751	3R_25829751_SNP [dm3] 3R_30004029_SNP [dm6]	T	C	2.085e^-4	0.488	SYNONYMOUS_CODING CG7911 UPSTREAM Nlp DOWNSTREAM Tace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9607596	3L_9607596_SNP [dm3] 3L_9614496_SNP [dm6]	T	C	2.086e^-4	0.488	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	2.109e^-4	0.493	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20036725	2L_20036725_SNP [dm3] 2L_20036725_SNP [dm6]	C	A	2.113e^-4	0.493	INTRON sNPF
2L	759557	2L_759557_SNP [dm3] 2L_759557_SNP [dm6]	G	T	2.114e^-4	0.493	SPLICE_SITE_REGION GABA-B-R3 INTRON GABA-B-R3
2R	8289969	2R_8289969_INS [dm3] 2R_12402464_INS [dm6]	A	AGAAAGTGATTATCACCAAC...	2.115e^-4	0.493	INTRON Cpr49Ae
2R	14020974	2R_14020974_SNP [dm3] 2R_18133469_SNP [dm6]	G	T	2.125e^-4	0.493	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	19270910	2L_19270910_SNP [dm3] 2L_19270910_SNP [dm6]	T	A	2.128e^-4	0.493	INTRON CR44190
2L	10939798	2L_10939798_SNP [dm3] 2L_10939798_SNP [dm6]	T	C	2.131e^-4	0.493	INTRON dpr2
X	4211966	X_4211966_SNP [dm3] X_4317933_SNP [dm6]	A	G	2.131e^-4	0.493	SYNONYMOUS_CODING mei-9	TF binding site BDTNP1_TFBS_dl
2R	17341766	2R_17341766_SNP [dm3] 2R_21454261_SNP [dm6]	C	T	2.132e^-4	0.493	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	6734994	X_6734994_SNP [dm3] X_6840961_SNP [dm6]	T	A	2.132e^-4	0.493	INTRON CG14435
3L	22842996	3L_22842996_SNP [dm3] 3L_22849896_SNP [dm6]	G	A	2.141e^-4	0.494	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5480312	3R_5480312_SNP [dm3] 3R_9654590_SNP [dm6]	G	A	2.141e^-4	0.494	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	2.150e^-4	0.495	INTERGENIC
3R	2423460	3R_2423460_SNP [dm3] 3R_6597738_SNP [dm6]	C	T	2.154e^-4	0.495	NON_SYNONYMOUS_CODING CG1138
2L	756836	2L_756836_SNP [dm3] 2L_756836_SNP [dm6]	C	T	2.158e^-4	0.495	NON_SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8204968	3R_8204968_SNP [dm3] 3R_12379246_SNP [dm6]	A	T	2.161e^-4	0.495	UTR_3_PRIME GstD7 UPSTREAM GstD8
2L	12801678	2L_12801678_SNP [dm3] 2L_12801678_SNP [dm6]	G	T	2.163e^-4	0.495	INTERGENIC
3R	15103393	3R_15103393_SNP [dm3] 3R_19277671_SNP [dm6]	A	T	2.167e^-4	0.495	INTERGENIC
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	2.168e^-4	0.495	INTERGENIC
X	8508217	X_8508217_SNP [dm3] X_8614184_SNP [dm6]	A	G	2.169e^-4	0.495	INTERGENIC
X	5787789	X_5787789_SNP [dm3] X_5893756_SNP [dm6]	C	T	2.175e^-4	0.495	INTRON CR45668	TF binding site mE1_TFBS_zfh1
2L	4157013	2L_4157013_SNP [dm3] 2L_4157013_SNP [dm6]	A	T	2.175e^-4	0.495	INTERGENIC
2L	1635841	2L_1635841_SNP [dm3] 2L_1635841_SNP [dm6]	T	C	2.175e^-4	0.495	INTERGENIC
3R	8877329	3R_8877329_SNP [dm3] 3R_13051607_SNP [dm6]	T	C	2.178e^-4	0.495	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13081755	3R_13081755_SNP [dm3] 3R_17256033_SNP [dm6]	G	T	2.180e^-4	0.495	INTRON beat-IIb
3R	4123584	3R_4123584_SNP [dm3] 3R_8297862_SNP [dm6]	C	T	2.184e^-4	0.495	SYNONYMOUS_CODING CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8092447	2R_8092447_SNP [dm3] 2R_12204942_SNP [dm6]	T	C	2.189e^-4	0.496	INTERGENIC
2L	2846181	2L_2846181_SNP [dm3] 2L_2846181_SNP [dm6]	G	C	2.190e^-4	0.496	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2R	3290703	2R_3290703_SNP [dm3] 2R_7403198_SNP [dm6]	T	A	2.201e^-4	0.497	NON_SYNONYMOUS_CODING CG43123 UPSTREAM CG43267 DOWNSTREAM CG11113 INTRON Eaf
3L	2796907	3L_2796907_SNP [dm3] 3L_2796907_SNP [dm6]	C	T	2.215e^-4	0.5	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	13767252	2L_13767252_SNP [dm3] 2L_13767252_SNP [dm6]	C	T	2.219e^-4	0.5	INTRON TM9SF4
3L	8255981	3L_8255981_SNP [dm3] 3L_8262881_SNP [dm6]	T	C	2.219e^-4	0.5	INTRON Dscam4
2R	12474766	2R_12474766_SNP [dm3] 2R_16587261_SNP [dm6]	A	G	2.222e^-4	0.5	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
3R	25417994	3R_25417994_SNP [dm3] 3R_29592272_SNP [dm6]	A	T	2.225e^-4	0.5	UPSTREAM alph INTRON alph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	7746303	3R_7746303_SNP [dm3] 3R_11920581_SNP [dm6]	A	C	2.226e^-4	0.5	INTRON Cad87A
2R	9971871	2R_9971871_SNP [dm3] 2R_14084366_SNP [dm6]	C	A	2.232e^-4	0.5	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	2.234e^-4	0.5	INTRON timeout & 2 others
3R	18983791	3R_18983791_SNP [dm3] 3R_23158069_SNP [dm6]	A	T	2.245e^-4	0.5	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	8883018	3R_8883018_SNP [dm3] 3R_13057296_SNP [dm6]	T	C	2.245e^-4	0.5	UPSTREAM sim DOWNSTREAM pic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2429785	3L_2429785_SNP [dm3] 3L_2429785_SNP [dm6]	A	T	2.252e^-4	0.5	INTRON CG45186
2L	19109513	2L_19109513_SNP [dm3] 2L_19109513_SNP [dm6]	G	T	2.256e^-4	0.5	UPSTREAM amd EXON CR44905
3L	12174639	3L_12174639_SNP [dm3] 3L_12181539_SNP [dm6]	G	A	2.261e^-4	0.5	INTRON CAH2
2L	16229370	2L_16229370_SNP [dm3] 2L_16229370_SNP [dm6]	G	C	2.262e^-4	0.5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1631816	2L_1631816_SNP [dm3] 2L_1631816_SNP [dm6]	C	T	2.263e^-4	0.5	INTERGENIC
3R	2221938	3R_2221938_SNP [dm3] 3R_6396216_SNP [dm6]	C	T	2.264e^-4	0.5	INTRON Dmtn
3L	5952144	3L_5952144_SNP [dm3] 3L_5959044_SNP [dm6]	T	A	2.269e^-4	0.5	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3305407	2R_3305407_SNP [dm3] 2R_7417902_SNP [dm6]	T	A	2.269e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14299097	3R_14299097_SNP [dm3] 3R_18473375_SNP [dm6]	C	T	2.272e^-4	0.5	INTRON fru
2R	17873904	2R_17873904_SNP [dm3] 2R_21986399_SNP [dm6]	C	T	2.272e^-4	0.5	DOWNSTREAM CG34370 INTRON CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8877058	3R_8877058_SNP [dm3] 3R_13051336_SNP [dm6]	G	A	2.278e^-4	0.5	UPSTREAM pic INTRON CG7966	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2145450	2L_2145450_SNP [dm3] 2L_2145450_SNP [dm6]	G	A	2.280e^-4	0.5	UTR_3_PRIME CG11723 UPSTREAM tho2 DOWNSTREAM CG11723	TF binding site BDTNP1_TFBS_dl
3R	2508281	3R_2508281_INS [dm3] 3R_6682559_INS [dm6]	T	TTTAAGCCTCAAAGAACTTT...	2.281e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22941943	3R_22941943_SNP [dm3] 3R_27116221_SNP [dm6]	C	T	2.281e^-4	0.5	SYNONYMOUS_CODING CG6066 UPSTREAM CG5880	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1601798	2L_1601798_SNP [dm3] 2L_1601798_SNP [dm6]	C	T	2.282e^-4	0.5	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15554680	2L_15554680_SNP [dm3] 2L_15554680_SNP [dm6]	C	T	2.282e^-4	0.5	UTR_5_PRIME kek3
3R	2739930	3R_2739930_SNP [dm3] 3R_6914208_SNP [dm6]	G	C	2.286e^-4	0.5	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	18298977	3L_18298977_SNP [dm3] 3L_18305877_SNP [dm6]	C	T	2.286e^-4	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	2.296e^-4	0.501	DOWNSTREAM CR45543 INTERGENIC
3R	1751317	3R_1751317_SNP [dm3] 3R_5925595_SNP [dm6]	T	C	2.301e^-4	0.502	INTRON CG34113
3L	2429675	3L_2429675_SNP [dm3] 3L_2429675_SNP [dm6]	G	C	2.305e^-4	0.502	INTRON CG45186
3R	9811496	3R_9811496_DEL [dm3] 3R_13985774_DEL [dm6]	TG	T	2.306e^-4	0.502	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	5422476	3R_5422476_SNP [dm3] 3R_9596754_SNP [dm6]	C	T	2.314e^-4	0.503	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26565903	3R_26565903_SNP [dm3] 3R_30740181_SNP [dm6]	G	A	2.323e^-4	0.504	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16145832	3R_16145832_SNP [dm3] 3R_20320110_SNP [dm6]	C	A	2.333e^-4	0.505	INTRON CG42668
3R	16145837	3R_16145837_SNP [dm3] 3R_20320115_SNP [dm6]	A	G	2.333e^-4	0.505	INTRON CG42668
3L	10748644	3L_10748644_SNP [dm3] 3L_10755544_SNP [dm6]	G	T	2.342e^-4	0.505	INTERGENIC
3R	19825851	3R_19825851_SNP [dm3] 3R_24000129_SNP [dm6]	C	A	2.343e^-4	0.505	INTRON KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3446384	3L_3446384_SNP [dm3] 3L_3446384_SNP [dm6]	C	T	2.347e^-4	0.505	INTRON eIF5B
3R	7983980	3R_7983980_SNP [dm3] 3R_12158258_SNP [dm6]	T	C	2.347e^-4	0.505	INTRON dpr15
2R	6051770	2R_6051770_SNP [dm3] 2R_10164265_SNP [dm6]	G	T	2.348e^-4	0.505	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
3R	7710356	3R_7710356_SNP [dm3] 3R_11884634_SNP [dm6]	A	T	2.350e^-4	0.505	SYNONYMOUS_CODING mthl5 INTRON CG31368
3L	5489570	3L_5489570_DEL [dm3] 3L_5496470_DEL [dm6]	CGCTCCGTAAACTGTAAC...	C	2.354e^-4	0.506	INTERGENIC
3R	13103210	3R_13103210_SNP [dm3] 3R_17277488_SNP [dm6]	A	G	2.365e^-4	0.508	INTERGENIC
3R	8798003	3R_8798003_SNP [dm3] 3R_12972281_SNP [dm6]	A	T	2.372e^-4	0.509	UPSTREAM CG7381 INTRON CG7381
2L	12801677	2L_12801677_SNP [dm3] 2L_12801677_SNP [dm6]	C	G	2.386e^-4	0.51	INTERGENIC
3L	16540983	3L_16540983_SNP [dm3] 3L_16547883_SNP [dm6]	A	C	2.388e^-4	0.51	INTERGENIC
2L	14960462	2L_14960462_SNP [dm3] 2L_14960462_SNP [dm6]	A	G	2.389e^-4	0.51	INTRON CG42313
3R	16144855	3R_16144855_DEL [dm3] 3R_20319133_DEL [dm6]	GG	G	2.396e^-4	0.51	INTRON CG42668
2R	8176481	2R_8176481_SNP [dm3] 2R_12288976_SNP [dm6]	C	T	2.398e^-4	0.51	INTRON CG42700
3R	7771152	3R_7771152_DEL [dm3] 3R_11945430_DEL [dm6]	ATGGGGTTATTGGACGGTGG...	A	2.401e^-4	0.51	INTRON Cad87A
3R	19206544	3R_19206544_SNP [dm3] 3R_23380822_SNP [dm6]	T	C	2.403e^-4	0.51	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	25604258	3R_25604258_SNP [dm3] 3R_29778536_SNP [dm6]	C	T	2.407e^-4	0.51	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2R	1366081	2R_1366081_SNP [dm3] 2R_5478576_SNP [dm6]	T	G	2.411e^-4	0.51	INTRON CG30440
3L	2994710	3L_2994710_SNP [dm3] 3L_2994710_SNP [dm6]	G	C	2.411e^-4	0.51	UPSTREAM CG2113 INTERGENIC
2L	5397256	2L_5397256_SNP [dm3] 2L_5397256_SNP [dm6]	T	A	2.412e^-4	0.51	INTERGENIC
3L	3442799	3L_3442799_SNP [dm3] 3L_3442799_SNP [dm6]	A	C	2.417e^-4	0.51	INTRON eIF5B
2L	15915824	2L_15915824_SNP [dm3] 2L_15915824_SNP [dm6]	C	A	2.418e^-4	0.51	INTRON beat-Ib
3R	2221973	3R_2221973_SNP [dm3] 3R_6396251_SNP [dm6]	G	T	2.419e^-4	0.51	INTRON Dmtn
2L	13842350	2L_13842350_DEL [dm3] 2L_13842350_DEL [dm6]	CAAAT	C	2.421e^-4	0.51	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	2.429e^-4	0.51	UPSTREAM CG11686 & 1 other INTERGENIC
3L	5489614	3L_5489614_SNP [dm3] 3L_5496514_SNP [dm6]	G	A	2.431e^-4	0.51	INTERGENIC
3R	6597779	3R_6597779_SNP [dm3] 3R_10772057_SNP [dm6]	C	A	2.436e^-4	0.51	INTRON CG45076	TF binding site mE1_TFBS_cad
3R	5411648	3R_5411648_SNP [dm3] 3R_9585926_SNP [dm6]	C	T	2.436e^-4	0.51	INTRON CG8301
3R	6571755	3R_6571755_SNP [dm3] 3R_10746033_SNP [dm6]	C	T	2.437e^-4	0.51	INTRON TkR86C
3R	12712282	3R_12712282_SNP [dm3] 3R_16886560_SNP [dm6]	C	T	2.443e^-4	0.51	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10959501	3L_10959501_SNP [dm3] 3L_10966401_SNP [dm6]	A	G	2.445e^-4	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13639793	3L_13639793_SNP [dm3] 3L_13646693_SNP [dm6]	C	T	2.446e^-4	0.51	INTRON bru-3
3L	12458614	3L_12458614_SNP [dm3] 3L_12465514_SNP [dm6]	A	C	2.446e^-4	0.51	INTRON eyg	TF binding site mE1_TFBS_chinmo
3L	22442892	3L_22442892_SNP [dm3] 3L_22449792_SNP [dm6]	A	C	2.450e^-4	0.51	INTERGENIC
3R	6545196	3R_6545196_DEL [dm3] 3R_10719474_DEL [dm6]	CTTCTCC	C	2.453e^-4	0.51	INTERGENIC
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	2.453e^-4	0.51	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	2.458e^-4	0.51	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	6640665	3R_6640665_SNP [dm3] 3R_10814943_SNP [dm6]	T	C	2.459e^-4	0.51	NON_SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	2.465e^-4	0.51	INTRON kar	TF binding site mE1_TFBS_cad
3R	12190842	3R_12190842_SNP [dm3] 3R_16365120_SNP [dm6]	C	T	2.467e^-4	0.51	INTRON CG14880
X	12533985	X_12533985_SNP [dm3] X_12639952_SNP [dm6]	G	A	2.469e^-4	0.51	INTRON Tomosyn
3R	25604256	3R_25604256_SNP [dm3] 3R_29778534_SNP [dm6]	T	C	2.470e^-4	0.51	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3L	9858621	3L_9858621_DEL [dm3] 3L_9865521_DEL [dm6]	CAG	C	2.482e^-4	0.511	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
2R	17078662	2R_17078662_SNP [dm3] 2R_21191157_SNP [dm6]	G	A	2.485e^-4	0.511	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	2.486e^-4	0.511	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9067083	3L_9067083_SNP [dm3] 3L_9073983_SNP [dm6]	T	C	2.489e^-4	0.511	SYNONYMOUS_CODING CG4942 UPSTREAM Tequila	TF binding site mE1_TFBS_sens
2L	11786248	2L_11786248_SNP [dm3] 2L_11786248_SNP [dm6]	G	A	2.493e^-4	0.511	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4078908	3L_4078908_SNP [dm3] 3L_4078908_SNP [dm6]	A	C	2.494e^-4	0.511	INTRON Gad1
2R	1336414	2R_1336414_SNP [dm3] 2R_5448909_SNP [dm6]	C	T	2.498e^-4	0.511	DOWNSTREAM laccase2 INTRON laccase2	transposable element FlyBase
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	2.502e^-4	0.511	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19270835	2L_19270835_INS [dm3] 2L_19270835_INS [dm6]	T	TTCAGGAATAA...	2.502e^-4	0.511	INTRON CR44190
3R	5455914	3R_5455914_SNP [dm3] 3R_9630192_SNP [dm6]	G	A	2.508e^-4	0.511	INTRON Crc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18384376	3R_18384376_SNP [dm3] 3R_22558654_SNP [dm6]	C	A	2.511e^-4	0.511	UTR_3_PRIME CG5278
3R	13175514	3R_13175514_SNP [dm3] 3R_17349792_SNP [dm6]	T	C	2.512e^-4	0.511	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	22618604	3L_22618604_SNP [dm3] 3L_22625504_SNP [dm6]	T	G	2.522e^-4	0.511	INTRON CG14459
3L	17022610	3L_17022610_SNP [dm3] 3L_17029510_SNP [dm6]	A	G	2.525e^-4	0.511	SYNONYMOUS_CODING CG7730 DOWNSTREAM Ilp8	TF binding site mE1_TFBS_inv
3R	26649484	3R_26649484_SNP [dm3] 3R_30823762_SNP [dm6]	C	T	2.529e^-4	0.511	INTRON cindr
2L	1601735	2L_1601735_SNP [dm3] 2L_1601735_SNP [dm6]	G	A	2.531e^-4	0.511	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20931108	3L_20931108_SNP [dm3] 3L_20938008_SNP [dm6]	T	A	2.532e^-4	0.511	INTRON fng
3L	18211440	3L_18211440_SNP [dm3] 3L_18218340_SNP [dm6]	C	T	2.537e^-4	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17855968	3R_17855968_SNP [dm3] 3R_22030246_SNP [dm6]	G	T	2.537e^-4	0.511	SPLICE_SITE_REGION CG13409 SYNONYMOUS_CODING CG13409 DOWNSTREAM ND42	TF binding site mE1_TFBS_cad
3R	2112935	3R_2112935_SNP [dm3] 3R_6287213_SNP [dm6]	C	T	2.540e^-4	0.511	UPSTREAM CG15594 INTERGENIC
2R	18121524	2R_18121524_SNP [dm3] 2R_22234019_SNP [dm6]	C	T	2.544e^-4	0.511	INTERGENIC
2R	18200451	2R_18200451_SNP [dm3] 2R_22312946_SNP [dm6]	C	A	2.549e^-4	0.511	EXON CR44758
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	2.550e^-4	0.511	UPSTREAM CG10126 INTERGENIC
3L	21583931	3L_21583931_SNP [dm3] 3L_21590831_SNP [dm6]	G	C	2.555e^-4	0.511	INTRON TfAP-2
X	11403955	X_11403955_SNP [dm3] X_11509922_SNP [dm6]	A	C	2.560e^-4	0.511	INTRON Drak
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	2.561e^-4	0.511	INTERGENIC
3R	8208678	3R_8208678_SNP [dm3] 3R_12382956_SNP [dm6]	G	C	2.564e^-4	0.511	UPSTREAM GstD11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13188214	3L_13188214_SNP [dm3] 3L_13195114_SNP [dm6]	A	G	2.565e^-4	0.511	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15679723	2R_15679723_SNP [dm3] 2R_19792218_SNP [dm6]	T	A	2.566e^-4	0.511	INTERGENIC
3R	6598184	3R_6598184_DEL [dm3] 3R_10772462_DEL [dm6]	GGCGATG	G	2.566e^-4	0.511	DOWNSTREAM fau & 1 other	TF binding site mE1_TFBS_cad
3R	8542603	3R_8542603_SNP [dm3] 3R_12716881_SNP [dm6]	A	T	2.568e^-4	0.511	INTRON Men
3R	8614566	3R_8614566_SNP [dm3] 3R_12788844_SNP [dm6]	T	C	2.569e^-4	0.511	INTERGENIC
3R	8985787	3R_8985787_SNP [dm3] 3R_13160065_SNP [dm6]	T	G	2.582e^-4	0.511	INTRON timeout
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	2.583e^-4	0.511	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	7587352	X_7587352_SNP [dm3] X_7693319_SNP [dm6]	T	A	2.584e^-4	0.511	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19617956	3R_19617956_SNP [dm3] 3R_23792234_SNP [dm6]	G	C	2.585e^-4	0.511	INTRON mbc
3L	1824950	3L_1824950_SNP [dm3] 3L_1824950_SNP [dm6]	T	C	2.591e^-4	0.511	INTRON Cpr62Ba
3L	1870196	3L_1870196_SNP [dm3] 3L_1870196_SNP [dm6]	C	T	2.593e^-4	0.511	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2419500	3R_2419500_SNP [dm3] 3R_6593778_SNP [dm6]	C	T	2.596e^-4	0.511	UPSTREAM dpr11 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18195597	2L_18195597_SNP [dm3] 2L_18195597_SNP [dm6]	A	G	2.597e^-4	0.511	INTRON CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13604289	3R_13604289_SNP [dm3] 3R_17778567_SNP [dm6]	C	T	2.598e^-4	0.511	INTRON CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12644697	2L_12644697_SNP [dm3] 2L_12644697_SNP [dm6]	T	C	2.601e^-4	0.511	INTRON Ref2
2L	11769201	2L_11769201_SNP [dm3] 2L_11769201_SNP [dm6]	G	T	2.603e^-4	0.511	INTERGENIC
X	16718356	X_16718356_SNP [dm3] X_16824323_SNP [dm6]	A	T	2.605e^-4	0.511	INTRON CG4829
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	2.605e^-4	0.511	INTRON vir-1
3L	3619938	3L_3619938_DEL [dm3] 3L_3619938_DEL [dm6]	TCT	T	2.609e^-4	0.511	DOWNSTREAM CG14974 INTERGENIC
2R	7226620	2R_7226620_SNP [dm3] 2R_11339115_SNP [dm6]	A	C	2.610e^-4	0.511	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8756850	3L_8756850_INS [dm3] 3L_8763750_INS [dm6]	C	CC	2.615e^-4	0.511	INTRON Fhos
2R	16863161	2R_16863161_SNP [dm3] 2R_20975656_SNP [dm6]	A	G	2.617e^-4	0.511	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	2.617e^-4	0.511	INTRON fru
3R	7747871	3R_7747871_SNP [dm3] 3R_11922149_SNP [dm6]	G	C	2.617e^-4	0.511	INTRON Cad87A
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	2.618e^-4	0.511	INTERGENIC
3R	8864715	3R_8864715_SNP [dm3] 3R_13038993_SNP [dm6]	G	C	2.619e^-4	0.511	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
3R	2714565	3R_2714565_SNP [dm3] 3R_6888843_SNP [dm6]	T	A	2.621e^-4	0.511	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19992208	2R_19992208_SNP [dm3] 2R_24104685_SNP [dm6]	G	A	2.628e^-4	0.511	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	2.630e^-4	0.511	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6549116	3R_6549116_SNP [dm3] 3R_10723394_SNP [dm6]	G	T	2.631e^-4	0.511	INTERGENIC
3L	5915065	3L_5915065_DEL [dm3] 3L_5921965_DEL [dm6]	TATT	T	2.636e^-4	0.511	UPSTREAM CG32407 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	13086905	3R_13086905_SNP [dm3] 3R_17261183_SNP [dm6]	C	T	2.640e^-4	0.511	INTRON beat-IIb
2L	14956560	2L_14956560_SNP [dm3] 2L_14956560_SNP [dm6]	T	C	2.643e^-4	0.511	INTRON CG42313
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	2.650e^-4	0.511	INTRON Octbeta2R
3L	16981470	3L_16981470_SNP [dm3] 3L_16988370_SNP [dm6]	A	T	2.656e^-4	0.511	INTRON Exn
3L	16541067	3L_16541067_SNP [dm3] 3L_16547967_SNP [dm6]	A	T	2.659e^-4	0.511	INTERGENIC
3R	6040490	3R_6040490_SNP [dm3] 3R_10214768_SNP [dm6]	G	T	2.660e^-4	0.511	INTRON Syn
2L	759539	2L_759539_SNP [dm3] 2L_759539_SNP [dm6]	T	C	2.660e^-4	0.511	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3
3L	1597464	3L_1597464_SNP [dm3] 3L_1597464_SNP [dm6]	G	C	2.667e^-4	0.511	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9594512	3L_9594512_MNP [dm3] 3L_9601412_MNP [dm6]	GCG	TTC	2.670e^-4	0.511	UPSTREAM CG3306 & 1 other INTERGENIC
3R	2346819	3R_2346819_SNP [dm3] 3R_6521097_SNP [dm6]	A	T	2.671e^-4	0.511	INTERGENIC
2L	19270895	2L_19270895_SNP [dm3] 2L_19270895_SNP [dm6]	G	A	2.671e^-4	0.511	INTRON CR44190
2L	19270896	2L_19270896_SNP [dm3] 2L_19270896_SNP [dm6]	A	T	2.671e^-4	0.511	INTRON CR44190
3L	18259042	3L_18259042_SNP [dm3] 3L_18265942_SNP [dm6]	G	T	2.675e^-4	0.511	INTERGENIC
3R	21246436	3R_21246436_SNP [dm3] 3R_25420714_SNP [dm6]	T	A	2.676e^-4	0.511	INTRON Fur1
X	20458391	X_20458391_SNP [dm3] X_20587364_SNP [dm6]	T	G	2.680e^-4	0.511	INTERGENIC
3R	7760063	3R_7760063_SNP [dm3] 3R_11934341_SNP [dm6]	C	T	2.687e^-4	0.511	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10904030	3R_10904030_SNP [dm3] 3R_15078308_SNP [dm6]	C	T	2.687e^-4	0.511	DOWNSTREAM CG6974 INTERGENIC
3R	17213941	3R_17213941_SNP [dm3] 3R_21388219_SNP [dm6]	T	A	2.692e^-4	0.511	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	3240578	3R_3240578_SNP [dm3] 3R_7414856_SNP [dm6]	C	A	2.694e^-4	0.511	INTERGENIC
X	11403953	X_11403953_SNP [dm3] X_11509920_SNP [dm6]	G	T	2.694e^-4	0.511	INTRON Drak
X	8552596	X_8552596_SNP [dm3] X_8658563_SNP [dm6]	A	G	2.695e^-4	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	2.700e^-4	0.511	UTR_3_PRIME CG34351
X	1998920	X_1998920_SNP [dm3] X_2104887_SNP [dm6]	T	C	2.701e^-4	0.511	INTRON csw
3L	11892865	3L_11892865_SNP [dm3] 3L_11899765_SNP [dm6]	G	A	2.706e^-4	0.511	INTRON CG44837 & 1 other
2R	7039005	2R_7039005_SNP [dm3] 2R_11151500_SNP [dm6]	A	G	2.708e^-4	0.511	INTRON CG13229
3L	11179056	3L_11179056_SNP [dm3] 3L_11185956_SNP [dm6]	G	C	2.708e^-4	0.511	INTRON GlcAT-P
3L	22620680	3L_22620680_SNP [dm3] 3L_22627580_SNP [dm6]	T	C	2.723e^-4	0.511	INTRON CG14459
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	2.726e^-4	0.511	INTERGENIC
2R	14570074	2R_14570074_SNP [dm3] 2R_18682569_SNP [dm6]	C	A	2.730e^-4	0.511	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	632167	2L_632167_SNP [dm3] 2L_632167_SNP [dm6]	C	T	2.731e^-4	0.511	INTERGENIC
2R	8101437	2R_8101437_SNP [dm3] 2R_12213932_SNP [dm6]	G	A	2.738e^-4	0.511	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4722235	2L_4722235_SNP [dm3] 2L_4722235_SNP [dm6]	T	A	2.738e^-4	0.511	UTR_3_PRIME CG34351
3R	8209974	3R_8209974_SNP [dm3] 3R_12384252_SNP [dm6]	T	A	2.738e^-4	0.511	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	22360950	2L_22360950_SNP [dm3] 2L_22360950_SNP [dm6]	T	G	2.739e^-4	0.511	INTRON CG17018	transposable element FlyBase

By genomic position
Variant impact
Gene name

Cuticul_9_C23_1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results