DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.936e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.025256
In_3R_P	0.020479
In_3R_K	0.007535

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	6.5313	0.0382
In_3R_K	11.9577	0.0025

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3948 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	18737270	X_18737270_SNP [dm3] X_18843237_SNP [dm6]	G	A	1.699e^-7	0.109	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	5000946	3R_5000946_INS [dm3] 3R_9175224_INS [dm6]	A	AA	2.605e^-7	0.109	INTRON pum
X	18173928	X_18173928_SNP [dm3] X_18279895_SNP [dm6]	G	T	3.380e^-7	0.109	INTRON upd3	TF binding site mE1_TFBS_chinmo
3L	22373749	3L_22373749_SNP [dm3] 3L_22380649_SNP [dm6]	G	C	3.651e^-7	0.109	INTRON Ten-m	TF binding site mE1_TFBS_sens
3R	4996216	3R_4996216_SNP [dm3] 3R_9170494_SNP [dm6]	T	C	4.048e^-7	0.109	INTRON pum
3R	4995451	3R_4995451_SNP [dm3] 3R_9169729_SNP [dm6]	T	C	4.606e^-7	0.109	INTRON pum
3R	5000941	3R_5000941_MNP [dm3] 3R_9175219_MNP [dm6]	CTC	TCA	6.299e^-7	0.109	INTRON pum
3R	5000954	3R_5000954_DEL [dm3] 3R_9175232_DEL [dm6]	AA	A	7.015e^-7	0.109	INTRON pum
X	18173239	X_18173239_SNP [dm3] X_18279206_SNP [dm6]	G	A	8.109e^-7	0.109	INTRON upd3
3R	5001765	3R_5001765_SNP [dm3] 3R_9176043_SNP [dm6]	C	T	8.518e^-7	0.109	INTRON pum
3L	19969059	3L_19969059_SNP [dm3] 3L_19975959_SNP [dm6]	G	T	8.563e^-7	0.109	INTRON Ac76E
3R	4992367	3R_4992367_SNP [dm3] 3R_9166645_SNP [dm6]	A	T	9.379e^-7	0.109	INTRON pum
3R	5001093	3R_5001093_SNP [dm3] 3R_9175371_SNP [dm6]	A	G	9.809e^-7	0.109	INTRON pum
3R	4996564	3R_4996564_SNP [dm3] 3R_9170842_SNP [dm6]	G	A	1.004e^-6	0.109	INTRON pum
3R	5001468	3R_5001468_SNP [dm3] 3R_9175746_SNP [dm6]	C	A	1.005e^-6	0.109	INTRON pum
3R	4997466	3R_4997466_SNP [dm3] 3R_9171744_SNP [dm6]	A	T	1.030e^-6	0.109	INTRON pum
3R	8366414	3R_8366414_SNP [dm3] 3R_12540692_SNP [dm6]	C	A	1.069e^-6	0.109	INTRON Octbeta3R
2L	6035309	2L_6035309_SNP [dm3] 2L_6035309_SNP [dm6]	G	C	1.161e^-6	0.109	SYNONYMOUS_CODING mtm UPSTREAM CG9109	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	4998854	3R_4998854_SNP [dm3] 3R_9173132_SNP [dm6]	A	G	1.174e^-6	0.109	INTRON pum
3R	13186623	3R_13186623_SNP [dm3] 3R_17360901_SNP [dm6]	G	A	1.193e^-6	0.109	INTRON beat-IIa
3R	5001114	3R_5001114_SNP [dm3] 3R_9175392_SNP [dm6]	C	A	1.266e^-6	0.109	INTRON pum
X	16018200	X_16018200_SNP [dm3] X_16124167_SNP [dm6]	A	T	1.306e^-6	0.109	UTR_5_PRIME disco-r INTRON disco-r	TF binding site mE1_TFBS_inv
3L	17025185	3L_17025185_SNP [dm3] 3L_17032085_SNP [dm6]	C	G	1.331e^-6	0.109	UPSTREAM Ilp8 EXON CR45756	TF binding site mE1_TFBS_Trl
3R	5000921	3R_5000921_SNP [dm3] 3R_9175199_SNP [dm6]	C	A	1.426e^-6	0.111	INTRON pum	TF binding site mE1_TFBS_bab1
3R	22283050	3R_22283050_SNP [dm3] 3R_26457328_SNP [dm6]	T	A	1.685e^-6	0.126	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
2L	9972740	2L_9972740_SNP [dm3] 2L_9972740_SNP [dm6]	A	G	1.988e^-6	0.142	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18737232	X_18737232_SNP [dm3] X_18843199_SNP [dm6]	T	G	2.044e^-6	0.142	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18173144	X_18173144_SNP [dm3] X_18279111_SNP [dm6]	G	A	2.515e^-6	0.165	INTRON upd3
3L	6570565	3L_6570565_SNP [dm3] 3L_6577465_SNP [dm6]	T	C	2.655e^-6	0.165	INTRON CG18769 & 1 other
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	2.794e^-6	0.165	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3R	4998137	3R_4998137_SNP [dm3] 3R_9172415_SNP [dm6]	T	A	2.823e^-6	0.165	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	5002903	3R_5002903_SNP [dm3] 3R_9177181_SNP [dm6]	T	G	3.360e^-6	0.165	UPSTREAM CG11997 INTRON pum	TF binding site BDTNP1_TFBS_twi
X	18737224	X_18737224_SNP [dm3] X_18843191_SNP [dm6]	A	C	3.544e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	16813657	2L_16813657_SNP [dm3] 2L_16813657_SNP [dm6]	T	C	3.642e^-6	0.165	SYNONYMOUS_CODING CG13272 INTRON CG13280
3R	10193750	3R_10193750_SNP [dm3] 3R_14368028_SNP [dm6]	G	T	3.705e^-6	0.165	INTRON NK7.1
3R	25817054	3R_25817054_SNP [dm3] 3R_29991332_SNP [dm6]	G	A	3.735e^-6	0.165	UTR_3_PRIME Acph-1 DOWNSTREAM CG7896	TF binding site mE1_TFBS_cad
3R	5001233	3R_5001233_SNP [dm3] 3R_9175511_SNP [dm6]	C	G	3.752e^-6	0.165	INTRON pum
X	18737157	X_18737157_SNP [dm3] X_18843124_SNP [dm6]	A	G	4.032e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737165	X_18737165_SNP [dm3] X_18843132_SNP [dm6]	A	T	4.055e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	5000901	3R_5000901_SNP [dm3] 3R_9175179_SNP [dm6]	T	C	4.092e^-6	0.165	INTRON pum	TF binding site mE1_TFBS_bab1
3R	13647569	3R_13647569_SNP [dm3] 3R_17821847_SNP [dm6]	A	G	4.118e^-6	0.165	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	18737255	X_18737255_SNP [dm3] X_18843222_SNP [dm6]	A	T	4.198e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737023	X_18737023_SNP [dm3] X_18842990_SNP [dm6]	T	G	4.302e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737171	X_18737171_SNP [dm3] X_18843138_SNP [dm6]	C	A	4.410e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737254	X_18737254_SNP [dm3] X_18843221_SNP [dm6]	T	C	4.715e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	4995330	3R_4995330_SNP [dm3] 3R_9169608_SNP [dm6]	A	G	4.761e^-6	0.165	INTRON pum
X	18173959	X_18173959_SNP [dm3] X_18279926_SNP [dm6]	T	A	4.890e^-6	0.165	INTRON upd3
3R	14732739	3R_14732739_SNP [dm3] 3R_18907017_SNP [dm6]	A	C	4.914e^-6	0.165	UTR_5_PRIME EndoA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	19057208	2R_19057208_SNP [dm3] 2R_23169685_SNP [dm6]	C	A	5.097e^-6	0.165	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18737168	X_18737168_SNP [dm3] X_18843135_SNP [dm6]	C	G	5.306e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737175	X_18737175_SNP [dm3] X_18843142_SNP [dm6]	C	G	5.306e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18737252	X_18737252_SNP [dm3] X_18843219_SNP [dm6]	T	A	5.306e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737207	X_18737207_SNP [dm3] X_18843174_SNP [dm6]	C	T	5.417e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18737186	X_18737186_SNP [dm3] X_18843153_SNP [dm6]	A	G	5.418e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18737240	X_18737240_SNP [dm3] X_18843207_SNP [dm6]	A	T	5.418e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737234	X_18737234_SNP [dm3] X_18843201_SNP [dm6]	T	C	5.463e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	7022263	3L_7022263_SNP [dm3] 3L_7029163_SNP [dm6]	C	G	5.569e^-6	0.165	INTRON Mp
X	18737163	X_18737163_SNP [dm3] X_18843130_SNP [dm6]	A	T	5.680e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737250	X_18737250_INS [dm3] X_18843217_INS [dm6]	A	ATCTGTATGCTG...	5.707e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	9318056	X_9318056_SNP [dm3] X_9424023_SNP [dm6]	C	G	5.727e^-6	0.165	INTRON mgl
3R	10224232	3R_10224232_SNP [dm3] 3R_14398510_SNP [dm6]	G	A	5.796e^-6	0.165	INTRON cv-c
2R	11250394	2R_11250394_SNP [dm3] 2R_15362889_SNP [dm6]	A	G	5.827e^-6	0.165	INTRON unc-5
X	18737227	X_18737227_SNP [dm3] X_18843194_SNP [dm6]	A	T	5.907e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737229	X_18737229_SNP [dm3] X_18843196_SNP [dm6]	A	T	5.907e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	5001118	3R_5001118_SNP [dm3] 3R_9175396_SNP [dm6]	T	C	5.950e^-6	0.165	INTRON pum
2L	19624712	2L_19624712_DEL [dm3] 2L_19624712_DEL [dm6]	GGTCGTG	G	6.024e^-6	0.165	INTRON Lar
X	19652156	X_19652156_SNP [dm3] X_19758123_SNP [dm6]	C	T	6.188e^-6	0.165	SYNONYMOUS_CODING Pmp70	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18737019	X_18737019_SNP [dm3] X_18842986_SNP [dm6]	G	C	6.267e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737156	X_18737156_SNP [dm3] X_18843123_SNP [dm6]	A	T	6.286e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737238	X_18737238_SNP [dm3] X_18843205_SNP [dm6]	C	A	6.298e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	10057286	3R_10057286_SNP [dm3] 3R_14231564_SNP [dm6]	C	A	6.382e^-6	0.165	INTERGENIC
X	18737202	X_18737202_INS [dm3] X_18843169_INS [dm6]	TA	CGTGTGGCTTGT...	6.408e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5000898	3R_5000898_SNP [dm3] 3R_9175176_SNP [dm6]	A	G	6.464e^-6	0.165	INTRON pum	TF binding site mE1_TFBS_bab1
2R	4085987	2R_4085987_SNP [dm3] 2R_8198482_SNP [dm6]	C	T	6.581e^-6	0.165	INTRON LRP1
X	18737241	X_18737241_SNP [dm3] X_18843208_SNP [dm6]	A	C	6.733e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737262	X_18737262_SNP [dm3] X_18843229_SNP [dm6]	A	G	6.741e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737017	X_18737017_SNP [dm3] X_18842984_SNP [dm6]	A	T	6.775e^-6	0.165	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737015	X_18737015_SNP [dm3] X_18842982_SNP [dm6]	A	T	7.269e^-6	0.169	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737245	X_18737245_INS [dm3] X_18843212_INS [dm6]	A	TCTC	7.411e^-6	0.169	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	5000860	3R_5000860_DEL [dm3] 3R_9175138_DEL [dm6]	AAGACA	A	7.468e^-6	0.169	INTRON pum	TF binding site mE1_TFBS_bab1
2L	496826	2L_496826_SNP [dm3] 2L_496826_SNP [dm6]	G	C	7.478e^-6	0.169	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18615373	3R_18615373_SNP [dm3] 3R_22789651_SNP [dm6]	A	G	7.633e^-6	0.169	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13985639	X_13985639_DEL [dm3] X_14091606_DEL [dm6]	CTTGGCA	C	7.651e^-6	0.169	INTERGENIC
3R	5001499	3R_5001499_SNP [dm3] 3R_9175777_SNP [dm6]	A	C	7.676e^-6	0.169	INTRON pum
3R	5001032	3R_5001032_SNP [dm3] 3R_9175310_SNP [dm6]	A	T	7.769e^-6	0.169	INTRON pum
3R	5005254	3R_5005254_SNP [dm3] 3R_9179532_SNP [dm6]	G	A	7.847e^-6	0.169	DOWNSTREAM CG11997 INTRON pum
2R	11621431	2R_11621431_SNP [dm3] 2R_15733926_SNP [dm6]	T	A	7.895e^-6	0.169	INTRON CG30089
X	18737236	X_18737236_SNP [dm3] X_18843203_SNP [dm6]	G	A	7.929e^-6	0.169	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737260	X_18737260_SNP [dm3] X_18843227_SNP [dm6]	A	C	8.438e^-6	0.172	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	7306552	2L_7306552_SNP [dm3] 2L_7306552_SNP [dm6]	A	T	8.591e^-6	0.172	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco
3R	10057283	3R_10057283_SNP [dm3] 3R_14231561_SNP [dm6]	A	G	8.753e^-6	0.172	INTERGENIC
3L	10693440	3L_10693440_SNP [dm3] 3L_10700340_SNP [dm6]	T	G	8.791e^-6	0.172	INTERGENIC
2L	1187301	2L_1187301_SNP [dm3] 2L_1187301_SNP [dm6]	A	T	8.877e^-6	0.172	INTRON CG5001
3R	13647564	3R_13647564_INS [dm3] 3R_17821842_INS [dm6]	G	GC	8.899e^-6	0.172	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	10159698	3R_10159698_SNP [dm3] 3R_14333976_SNP [dm6]	G	A	8.940e^-6	0.172	INTRON NK7.1
2L	14312926	2L_14312926_SNP [dm3] 2L_14312926_SNP [dm6]	C	T	9.034e^-6	0.172	INTRON wb
3L	14754938	3L_14754938_SNP [dm3] 3L_14761838_SNP [dm6]	C	G	9.065e^-6	0.172	UTR_5_PRIME CG33260 UPSTREAM CG9384 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7022275	3L_7022275_SNP [dm3] 3L_7029175_SNP [dm6]	A	G	9.085e^-6	0.172	INTRON Mp
X	18737090	X_18737090_DEL [dm3] X_18843057_DEL [dm6]	CCACGATTATCGCATACCCG...	C	9.102e^-6	0.172	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	transposable element FlyBase
3L	7022204	3L_7022204_SNP [dm3] 3L_7029104_SNP [dm6]	C	A	9.175e^-6	0.172	INTRON Mp
X	18737197	X_18737197_SNP [dm3] X_18843164_SNP [dm6]	G	A	9.312e^-6	0.173	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13647562	3R_13647562_INS [dm3] 3R_17821840_INS [dm6]	A	AACAC	9.644e^-6	0.177	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13647561	3R_13647561_SNP [dm3] 3R_17821839_SNP [dm6]	A	C	9.793e^-6	0.178	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13647570	3R_13647570_SNP [dm3] 3R_17821848_SNP [dm6]	T	C	9.982e^-6	0.18	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	21837768	X_21837768_SNP [dm3] X_22435933_SNP [dm6]	G	A	1.009e^-5	0.18	INTERGENIC	transposable element FlyBase
2L	14693918	2L_14693918_SNP [dm3] 2L_14693918_SNP [dm6]	C	T	1.037e^-5	0.183	INTERGENIC
3L	17009361	3L_17009361_SNP [dm3] 3L_17016261_SNP [dm6]	C	T	1.041e^-5	0.183	UPSTREAM CG7728 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	2839815	2L_2839815_SNP [dm3] 2L_2839815_SNP [dm6]	T	G	1.059e^-5	0.184	UPSTREAM CG2975 DOWNSTREAM CR45342 & 1 other INTERGENIC
2L	16550143	2L_16550143_SNP [dm3] 2L_16550143_SNP [dm6]	G	C	1.098e^-5	0.186	UPSTREAM CG5968 INTRON CG42389
3R	5001394	3R_5001394_SNP [dm3] 3R_9175672_SNP [dm6]	C	A	1.107e^-5	0.186	INTRON pum
2L	16550132	2L_16550132_SNP [dm3] 2L_16550132_SNP [dm6]	G	C	1.111e^-5	0.186	UPSTREAM CG5968 INTRON CG42389
X	18408142	X_18408142_SNP [dm3] X_18514109_SNP [dm6]	G	T	1.119e^-5	0.186	INTRON CG6470
3R	13011197	3R_13011197_SNP [dm3] 3R_17185475_SNP [dm6]	T	A	1.132e^-5	0.186	INTRON Mur89F
3L	16229346	3L_16229346_SNP [dm3] 3L_16236246_SNP [dm6]	C	A	1.138e^-5	0.186	UTR_3_PRIME l_3_72Dp
3R	4986665	3R_4986665_SNP [dm3] 3R_9160943_SNP [dm6]	C	T	1.151e^-5	0.186	INTRON pum	TF binding site mE1_TFBS_Trl
3R	14389108	3R_14389108_SNP [dm3] 3R_18563386_SNP [dm6]	A	C	1.153e^-5	0.186	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	10491232	3L_10491232_SNP [dm3] 3L_10498132_SNP [dm6]	T	A	1.170e^-5	0.186	INTRON A2bp1
3R	5005572	3R_5005572_SNP [dm3] 3R_9179850_SNP [dm6]	G	A	1.172e^-5	0.186	DOWNSTREAM CG11997 INTRON pum
3R	5001375	3R_5001375_DEL [dm3] 3R_9175653_DEL [dm6]	GG	G	1.182e^-5	0.186	INTRON pum
X	13985637	X_13985637_SNP [dm3] X_14091604_SNP [dm6]	A	T	1.228e^-5	0.192	INTERGENIC
3R	13647539	3R_13647539_SNP [dm3] 3R_17821817_SNP [dm6]	G	A	1.239e^-5	0.192	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	18560195	3L_18560195_DEL [dm3] 3L_18567095_DEL [dm6]	CATAGGATTTTCGATTGC...	C	1.254e^-5	0.193	INTRON AstC-R1
X	7604418	X_7604418_INS [dm3] X_7710385_INS [dm6]	T	TCTT	1.274e^-5	0.194	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11971518	2L_11971518_SNP [dm3] 2L_11971518_SNP [dm6]	G	A	1.329e^-5	0.201	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	17293395	X_17293395_SNP [dm3] X_17399362_SNP [dm6]	A	G	1.346e^-5	0.202	INTRON B-H1
3R	8280116	3R_8280116_SNP [dm3] 3R_12454394_SNP [dm6]	A	C	1.492e^-5	0.222	INTRON CG18549	TF binding site BDTNP1_TFBS_prd
X	18737176	X_18737176_SNP [dm3] X_18843143_SNP [dm6]	T	A	1.529e^-5	0.226	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	10074111	3R_10074111_SNP [dm3] 3R_14248389_SNP [dm6]	C	G	1.587e^-5	0.232	INTERGENIC
3R	4488863	3R_4488863_SNP [dm3] 3R_8663141_SNP [dm6]	A	G	1.604e^-5	0.232	SYNONYMOUS_CODING p UPSTREAM CG8032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	2994768	X_2994768_SNP [dm3] X_3100735_SNP [dm6]	T	G	1.638e^-5	0.232	INTRON kirre
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	1.653e^-5	0.232	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	13924953	3R_13924953_SNP [dm3] 3R_18099231_SNP [dm6]	T	C	1.653e^-5	0.232	INTRON sr
3L	12424319	3L_12424319_SNP [dm3] 3L_12431219_SNP [dm6]	C	G	1.664e^-5	0.232	INTRON toe
2L	14694101	2L_14694101_SNP [dm3] 2L_14694101_SNP [dm6]	T	A	1.670e^-5	0.232	INTERGENIC
X	4983665	X_4983665_DEL [dm3] X_5089632_DEL [dm6]	AT	A	1.690e^-5	0.232	UTR_5_PRIME rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8264461	3R_8264461_SNP [dm3] 3R_12438739_SNP [dm6]	G	A	1.722e^-5	0.232	NON_SYNONYMOUS_CODING CG17207 UPSTREAM Desat1 DOWNSTREAM Desat2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	16429543	3R_16429543_SNP [dm3] 3R_20603821_SNP [dm6]	A	G	1.726e^-5	0.232	DOWNSTREAM tRNA:CR31506 INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14388998	3R_14388998_SNP [dm3] 3R_18563276_SNP [dm6]	A	G	1.732e^-5	0.232	DOWNSTREAM CG43210 & 1 other INTERGENIC
X	18064205	X_18064205_SNP [dm3] X_18170172_SNP [dm6]	C	A	1.736e^-5	0.232	UTR_3_PRIME Frq1
3R	3396213	3R_3396213_SNP [dm3] 3R_7570491_SNP [dm6]	C	T	1.740e^-5	0.232	UTR_3_PRIME CG34127 DOWNSTREAM CG34127
X	18737192	X_18737192_SNP [dm3] X_18843159_SNP [dm6]	T	G	1.760e^-5	0.232	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	3752906	3R_3752906_SNP [dm3] 3R_7927184_SNP [dm6]	C	T	1.768e^-5	0.232	INTRON dsx
3R	25531107	3R_25531107_SNP [dm3] 3R_29705385_SNP [dm6]	T	C	1.772e^-5	0.232	INTERGENIC
3R	8280154	3R_8280154_SNP [dm3] 3R_12454432_SNP [dm6]	G	A	1.793e^-5	0.234	INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	12746844	3R_12746844_SNP [dm3] 3R_16921122_SNP [dm6]	A	G	1.834e^-5	0.237	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14389129	3R_14389129_SNP [dm3] 3R_18563407_SNP [dm6]	T	A	1.862e^-5	0.239	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	4992909	3R_4992909_SNP [dm3] 3R_9167187_SNP [dm6]	C	T	1.877e^-5	0.239	INTRON pum
3R	4991494	3R_4991494_INS [dm3] 3R_9165772_INS [dm6]	A	ACAAACGTTACAA...	1.897e^-5	0.24	INTRON pum
X	18171950	X_18171950_SNP [dm3] X_18277917_SNP [dm6]	G	A	1.915e^-5	0.241	INTRON upd3
3R	1742137	3R_1742137_SNP [dm3] 3R_5916415_SNP [dm6]	A	G	1.952e^-5	0.244	INTRON CG34113
3L	7022487	3L_7022487_SNP [dm3] 3L_7029387_SNP [dm6]	A	T	1.970e^-5	0.245	INTRON Mp
3L	2638632	3L_2638632_SNP [dm3] 3L_2638632_SNP [dm6]	G	A	1.994e^-5	0.246	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21837539	X_21837539_SNP [dm3] X_22435704_SNP [dm6]	C	A	2.023e^-5	0.248	INTERGENIC
2R	19266935	2R_19266935_SNP [dm3] 2R_23379412_SNP [dm6]	C	T	2.034e^-5	0.248	SYNONYMOUS_CODING yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14146112	3R_14146112_SNP [dm3] 3R_18320390_SNP [dm6]	A	C	2.094e^-5	0.253	INTRON CG31235
2L	3282663	2L_3282663_SNP [dm3] 2L_3282663_SNP [dm6]	C	T	2.103e^-5	0.253	INTERGENIC
2L	12554597	2L_12554597_SNP [dm3] 2L_12554597_SNP [dm6]	C	G	2.144e^-5	0.256	INTERGENIC
3L	21072849	3L_21072849_SNP [dm3] 3L_21079749_SNP [dm6]	A	C	2.176e^-5	0.258	INTRON ko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	18246625	3R_18246625_SNP [dm3] 3R_22420903_SNP [dm6]	G	T	2.190e^-5	0.258	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16566918	X_16566918_SNP [dm3] X_16672885_SNP [dm6]	A	T	2.210e^-5	0.258	INTRON CG13012
3R	4710595	3R_4710595_SNP [dm3] 3R_8884873_SNP [dm6]	T	C	2.217e^-5	0.258	INTRON pyd
3R	17674807	3R_17674807_SNP [dm3] 3R_21849085_SNP [dm6]	G	C	2.243e^-5	0.26	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	18884675	3L_18884675_SNP [dm3] 3L_18891575_SNP [dm6]	T	C	2.294e^-5	0.264	UPSTREAM NijB INTERGENIC	TF binding site mE1_TFBS_bab1
2R	10605330	2R_10605330_SNP [dm3] 2R_14717825_SNP [dm6]	C	A	2.325e^-5	0.266	INTERGENIC
X	18408154	X_18408154_SNP [dm3] X_18514121_SNP [dm6]	C	T	2.367e^-5	0.268	INTRON CG6470
2R	6342875	2R_6342875_SNP [dm3] 2R_10455370_SNP [dm6]	A	G	2.374e^-5	0.268	SYNONYMOUS_CODING Cyp49a1 INTRON Galphao
3R	23844176	3R_23844176_SNP [dm3] 3R_28018454_SNP [dm6]	C	G	2.392e^-5	0.269	INTERGENIC
3R	4987060	3R_4987060_DEL [dm3] 3R_9161338_DEL [dm6]	GG	G	2.415e^-5	0.27	INTRON pum
3R	5001187	3R_5001187_SNP [dm3] 3R_9175465_SNP [dm6]	A	G	2.437e^-5	0.27	INTRON pum
2L	9841375	2L_9841375_SNP [dm3] 2L_9841375_SNP [dm6]	C	T	2.471e^-5	0.272	INTRON nAChRalpha6
2L	16550133	2L_16550133_SNP [dm3] 2L_16550133_SNP [dm6]	T	C	2.481e^-5	0.272	UPSTREAM CG5968 INTRON CG42389
3R	10119255	3R_10119255_SNP [dm3] 3R_14293533_SNP [dm6]	T	A	2.556e^-5	0.276	INTRON CG12207
3R	4991472	3R_4991472_SNP [dm3] 3R_9165750_SNP [dm6]	G	A	2.567e^-5	0.276	INTRON pum
3R	14813107	3R_14813107_SNP [dm3] 3R_18987385_SNP [dm6]	G	A	2.585e^-5	0.276	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23126717	3R_23126717_SNP [dm3] 3R_27300995_SNP [dm6]	A	T	2.597e^-5	0.276	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	4990612	3R_4990612_SNP [dm3] 3R_9164890_SNP [dm6]	A	G	2.600e^-5	0.276	INTRON pum
3L	10491293	3L_10491293_SNP [dm3] 3L_10498193_SNP [dm6]	C	A	2.601e^-5	0.276	INTRON A2bp1
3L	17316868	3L_17316868_SNP [dm3] 3L_17323768_SNP [dm6]	C	A	2.625e^-5	0.277	NON_SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725
X	17296308	X_17296308_SNP [dm3] X_17402275_SNP [dm6]	G	A	2.660e^-5	0.278	SYNONYMOUS_CODING B-H1 UTR_3_PRIME B-H1	TF binding site BDTNP1_TFBS_da
3R	5001028	3R_5001028_SNP [dm3] 3R_9175306_SNP [dm6]	A	G	2.667e^-5	0.278	INTRON pum
2R	10032697	2R_10032697_SNP [dm3] 2R_14145192_SNP [dm6]	A	G	2.711e^-5	0.281	DOWNSTREAM mir-989 INTERGENIC
3R	20499020	3R_20499020_SNP [dm3] 3R_24673298_SNP [dm6]	T	G	2.730e^-5	0.281	INTRON slo
2R	7458085	2R_7458085_SNP [dm3] 2R_11570580_SNP [dm6]	A	G	2.815e^-5	0.285	INTERGENIC
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	2.827e^-5	0.285	INTERGENIC
3L	18884677	3L_18884677_SNP [dm3] 3L_18891577_SNP [dm6]	C	T	2.830e^-5	0.285	UPSTREAM NijB INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3R	22446451	3R_22446451_SNP [dm3] 3R_26620729_SNP [dm6]	A	G	2.844e^-5	0.285	NON_SYNONYMOUS_CODING TwdlP DOWNSTREAM TwdlM	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17024390	3L_17024390_SNP [dm3] 3L_17031290_SNP [dm6]	C	A	2.871e^-5	0.285	DOWNSTREAM CR45756 INTRON Ilp8
3L	1993778	3L_1993778_DEL [dm3] 3L_1993778_DEL [dm6]	CCC	C	2.874e^-5	0.285	INTERGENIC
2R	11621538	2R_11621538_SNP [dm3] 2R_15734033_SNP [dm6]	C	A	2.884e^-5	0.285	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	8925708	X_8925708_DEL [dm3] X_9031675_DEL [dm6]	TTATTT	A	2.888e^-5	0.285	INTRON CR43836 & 1 other
X	21837123	X_21837123_DEL [dm3] X_22435288_DEL [dm6]	TATGC	T	2.940e^-5	0.289	INTERGENIC	transposable element FlyBase
2R	14688846	2R_14688846_SNP [dm3] 2R_18801341_SNP [dm6]	A	T	2.962e^-5	0.289	INTRON l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4012718	2R_4012718_SNP [dm3] 2R_8125213_SNP [dm6]	A	C	2.970e^-5	0.289	DOWNSTREAM Nup50 INTRON coil
2R	4012732	2R_4012732_SNP [dm3] 2R_8125227_SNP [dm6]	A	G	3.000e^-5	0.29	DOWNSTREAM Nup50 INTRON coil
3R	4991963	3R_4991963_SNP [dm3] 3R_9166241_SNP [dm6]	A	G	3.024e^-5	0.291	INTRON pum
2L	14693897	2L_14693897_SNP [dm3] 2L_14693897_SNP [dm6]	T	C	3.096e^-5	0.296	INTERGENIC
3R	8338130	3R_8338130_SNP [dm3] 3R_12512408_SNP [dm6]	G	C	3.117e^-5	0.296	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc	TF binding site mE1_TFBS_cad
2R	4413736	2R_4413736_SNP [dm3] 2R_8526231_SNP [dm6]	G	A	3.143e^-5	0.296	INTRON mtt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14146156	3R_14146156_SNP [dm3] 3R_18320434_SNP [dm6]	T	G	3.146e^-5	0.296	INTRON CG31235
3R	18614670	3R_18614670_SNP [dm3] 3R_22788948_SNP [dm6]	G	A	3.201e^-5	0.3	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17525502	3R_17525502_SNP [dm3] 3R_21699780_SNP [dm6]	A	T	3.210e^-5	0.3	INTRON CG31176
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	3.235e^-5	0.3	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	16232878	2L_16232878_SNP [dm3] 2L_16232878_SNP [dm6]	G	A	3.266e^-5	0.302	INTRON CG42817
3R	10057303	3R_10057303_SNP [dm3] 3R_14231581_SNP [dm6]	C	T	3.282e^-5	0.302	INTERGENIC
3L	1899508	3L_1899508_SNP [dm3] 3L_1899508_SNP [dm6]	C	T	3.309e^-5	0.302	DOWNSTREAM CG1887 INTRON CG1887	TF binding site BDTNP1_TFBS_da
3L	11550955	3L_11550955_SNP [dm3] 3L_11557855_SNP [dm6]	G	A	3.332e^-5	0.302	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17985297	3R_17985297_SNP [dm3] 3R_22159575_SNP [dm6]	T	G	3.333e^-5	0.302	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
X	19651584	X_19651584_SNP [dm3] X_19757551_SNP [dm6]	T	C	3.359e^-5	0.303	INTRON Pmp70	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13727699	2R_13727699_SNP [dm3] 2R_17840194_SNP [dm6]	G	C	3.389e^-5	0.303	INTRON grh	TF binding site mE1_TFBS_inv
3L	11549969	3L_11549969_SNP [dm3] 3L_11556869_SNP [dm6]	T	C	3.395e^-5	0.303	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	19299446	X_19299446_SNP [dm3] X_19405413_SNP [dm6]	T	G	3.430e^-5	0.305	INTRON kek5
3L	3932298	3L_3932298_SNP [dm3] 3L_3932298_SNP [dm6]	C	T	3.504e^-5	0.308	INTRON Eip63F-1
2R	13235986	2R_13235986_SNP [dm3] 2R_17348481_SNP [dm6]	T	C	3.509e^-5	0.308	INTRON mbl
3R	16429550	3R_16429550_SNP [dm3] 3R_20603828_SNP [dm6]	T	G	3.514e^-5	0.308	DOWNSTREAM tRNA:CR31506 INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	19962569	3L_19962569_SNP [dm3] 3L_19969469_SNP [dm6]	G	A	3.556e^-5	0.31	INTRON Ac76E
3R	17525506	3R_17525506_SNP [dm3] 3R_21699784_SNP [dm6]	G	T	3.610e^-5	0.311	INTRON CG31176
3L	18884592	3L_18884592_SNP [dm3] 3L_18891492_SNP [dm6]	A	C	3.650e^-5	0.311	UPSTREAM NijB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	3.664e^-5	0.311	INTRON CG42313
3R	13011184	3R_13011184_DEL [dm3] 3R_17185462_DEL [dm6]	TA	T	3.665e^-5	0.311	INTRON Mur89F
3R	16428653	3R_16428653_SNP [dm3] 3R_20602931_SNP [dm6]	G	A	3.690e^-5	0.311	INTRON bon
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	3.720e^-5	0.311	INTRON CG13579
X	8925702	X_8925702_SNP [dm3] X_9031669_SNP [dm6]	A	T	3.729e^-5	0.311	INTRON CR43836 & 1 other
X	18996244	X_18996244_SNP [dm3] X_19102211_SNP [dm6]	C	G	3.733e^-5	0.311	INTERGENIC
X	18737231	X_18737231_SNP [dm3] X_18843198_SNP [dm6]	T	G	3.734e^-5	0.311	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	11076515	X_11076515_SNP [dm3] X_11182482_SNP [dm6]	T	G	3.735e^-5	0.311	UPSTREAM CG15200 INTERGENIC
2R	17285188	2R_17285188_SNP [dm3] 2R_21397683_SNP [dm6]	A	C	3.820e^-5	0.317	INTRON Sdc
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	3.850e^-5	0.318	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3R	15462755	3R_15462755_SNP [dm3] 3R_19637033_SNP [dm6]	T	G	3.898e^-5	0.321	INTRON subdued
3R	5003805	3R_5003805_SNP [dm3] 3R_9178083_SNP [dm6]	C	T	3.945e^-5	0.322	SYNONYMOUS_CODING CG11997 INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13752358	2R_13752358_SNP [dm3] 2R_17864853_SNP [dm6]	G	T	3.957e^-5	0.322	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2R	14507834	2R_14507834_SNP [dm3] 2R_18620329_SNP [dm6]	T	A	3.966e^-5	0.322	DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	4.003e^-5	0.322	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
X	13009547	X_13009547_SNP [dm3] X_13115514_SNP [dm6]	T	C	4.005e^-5	0.322	INTRON CG42237
3L	7022165	3L_7022165_SNP [dm3] 3L_7029065_SNP [dm6]	G	C	4.019e^-5	0.322	INTRON Mp
3R	6836517	3R_6836517_DEL [dm3] 3R_11010795_DEL [dm6]	GAAAATGTAGCTTCTC...	G	4.030e^-5	0.322	INTRON CG34114
3R	1323212	3R_1323212_SNP [dm3] 3R_5497490_SNP [dm6]	T	A	4.047e^-5	0.322	INTRON CG31547	TF binding site mE1_TFBS_cad
3R	4251281	3R_4251281_INS [dm3] 3R_8425559_INS [dm6]	C	CA	4.074e^-5	0.322	INTRON CG45263
3R	1323381	3R_1323381_SNP [dm3] 3R_5497659_SNP [dm6]	C	G	4.081e^-5	0.322	INTRON CG31547	TF binding site mE1_TFBS_cad
X	19610748	X_19610748_SNP [dm3] X_19716715_SNP [dm6]	C	T	4.137e^-5	0.323	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21845434	X_21845434_SNP [dm3] X_22443598_SNP [dm6]	G	T	4.148e^-5	0.323	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	19737729	X_19737729_SNP [dm3] X_19843696_SNP [dm6]	A	G	4.162e^-5	0.323	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	17523263	3R_17523263_SNP [dm3] 3R_21697541_SNP [dm6]	A	T	4.162e^-5	0.323	INTRON CG31176
3R	1755865	3R_1755865_SNP [dm3] 3R_5930143_SNP [dm6]	C	T	4.201e^-5	0.324	INTRON CG34113
3L	5897172	3L_5897172_SNP [dm3] 3L_5904072_SNP [dm6]	A	T	4.221e^-5	0.324	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
3L	19967328	3L_19967328_SNP [dm3] 3L_19974228_SNP [dm6]	C	T	4.234e^-5	0.324	INTRON Ac76E
3R	25818024	3R_25818024_SNP [dm3] 3R_29992302_SNP [dm6]	A	G	4.273e^-5	0.324	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13752368	2R_13752368_SNP [dm3] 2R_17864863_SNP [dm6]	G	A	4.340e^-5	0.324	SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2L	14315555	2L_14315555_SNP [dm3] 2L_14315555_SNP [dm6]	G	A	4.348e^-5	0.324	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14146033	3R_14146033_SNP [dm3] 3R_18320311_SNP [dm6]	G	A	4.383e^-5	0.324	INTRON CG31235
2L	11971458	2L_11971458_SNP [dm3] 2L_11971458_SNP [dm6]	A	T	4.384e^-5	0.324	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	4991866	3R_4991866_SNP [dm3] 3R_9166144_SNP [dm6]	A	T	4.384e^-5	0.324	INTRON pum
X	18173655	X_18173655_SNP [dm3] X_18279622_SNP [dm6]	C	T	4.392e^-5	0.324	SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11971634	2L_11971634_SNP [dm3] 2L_11971634_SNP [dm6]	C	T	4.434e^-5	0.324	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18737140	X_18737140_SNP [dm3] X_18843107_SNP [dm6]	C	A	4.438e^-5	0.324	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	18492163	3R_18492163_SNP [dm3] 3R_22666441_SNP [dm6]	T	C	4.448e^-5	0.324	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	5027800	2L_5027800_SNP [dm3] 2L_5027800_SNP [dm6]	A	T	4.467e^-5	0.324	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	7850887	3L_7850887_SNP [dm3] 3L_7857787_SNP [dm6]	A	T	4.526e^-5	0.324	INTRON Pdp1
3R	18615203	3R_18615203_SNP [dm3] 3R_22789481_SNP [dm6]	G	C	4.537e^-5	0.324	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	17297200	X_17297200_SNP [dm3] X_17403167_SNP [dm6]	C	G	4.540e^-5	0.324	UTR_3_PRIME B-H1
2R	17285383	2R_17285383_SNP [dm3] 2R_21397878_SNP [dm6]	C	T	4.544e^-5	0.324	INTRON Sdc
2R	17422756	2R_17422756_SNP [dm3] 2R_21535251_SNP [dm6]	C	A	4.558e^-5	0.324	DOWNSTREAM CG30286 INTRON Egfr	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3016405	2L_3016405_SNP [dm3] 2L_3016405_SNP [dm6]	G	A	4.592e^-5	0.324	DOWNSTREAM CG17224 & 1 other INTERGENIC
3R	5001535	3R_5001535_SNP [dm3] 3R_9175813_SNP [dm6]	A	G	4.652e^-5	0.324	INTRON pum
3R	13315678	3R_13315678_SNP [dm3] 3R_17489956_SNP [dm6]	G	C	4.654e^-5	0.324	INTRON Dscam3
X	15771826	X_15771826_SNP [dm3] X_15877793_SNP [dm6]	C	G	4.704e^-5	0.324	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7591643	3L_7591643_SNP [dm3] 3L_7598543_SNP [dm6]	G	A	4.806e^-5	0.324	INTRON CG33275
3L	7591660	3L_7591660_SNP [dm3] 3L_7598560_SNP [dm6]	C	T	4.806e^-5	0.324	INTRON CG33275	TF binding site mE1_TFBS_inv
3L	11549776	3L_11549776_SNP [dm3] 3L_11556676_SNP [dm6]	A	G	4.807e^-5	0.324	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11637450	2R_11637450_SNP [dm3] 2R_15749945_SNP [dm6]	C	A	4.819e^-5	0.324	INTRON CG30089
3R	18388961	3R_18388961_SNP [dm3] 3R_22563239_SNP [dm6]	C	G	4.826e^-5	0.324	UPSTREAM CG5278 INTERGENIC
3R	10159387	3R_10159387_SNP [dm3] 3R_14333665_SNP [dm6]	A	G	4.841e^-5	0.324	INTRON NK7.1
2R	17116178	2R_17116178_DEL [dm3] 2R_21228673_DEL [dm6]	TT	T	4.841e^-5	0.324	INTRON ASPP
X	17615670	X_17615670_SNP [dm3] X_17721637_SNP [dm6]	T	A	4.876e^-5	0.324	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17615671	X_17615671_SNP [dm3] X_17721638_SNP [dm6]	C	A	4.876e^-5	0.324	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17615677	X_17615677_INS [dm3] X_17721644_INS [dm6]	A	AT	4.876e^-5	0.324	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17615684	X_17615684_SNP [dm3] X_17721651_SNP [dm6]	A	G	4.876e^-5	0.324	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18150600	X_18150600_SNP [dm3] X_18256567_SNP [dm6]	A	G	4.882e^-5	0.324	DOWNSTREAM CR45613 INTERGENIC
3L	16351949	3L_16351949_SNP [dm3] 3L_16358849_SNP [dm6]	G	C	4.892e^-5	0.324	INTRON CG45057
X	17615679	X_17615679_SNP [dm3] X_17721646_SNP [dm6]	A	G	4.900e^-5	0.324	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13647711	3R_13647711_SNP [dm3] 3R_17821989_SNP [dm6]	T	C	4.935e^-5	0.324	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16232942	2L_16232942_SNP [dm3] 2L_16232942_SNP [dm6]	C	T	4.945e^-5	0.324	INTRON CG42817
X	19679511	X_19679511_SNP [dm3] X_19785478_SNP [dm6]	A	C	4.957e^-5	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	15771876	X_15771876_SNP [dm3] X_15877843_SNP [dm6]	A	G	4.987e^-5	0.324	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8925188	X_8925188_SNP [dm3] X_9031155_SNP [dm6]	A	C	5.033e^-5	0.324	INTRON CR43836 & 1 other
3R	24166306	3R_24166306_SNP [dm3] 3R_28340584_SNP [dm6]	G	T	5.050e^-5	0.324	SYNONYMOUS_CODING Moca-cyp START_GAINED Moca-cyp UTR_5_PRIME Moca-cyp UPSTREAM Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8336608	X_8336608_SNP [dm3] X_8442575_SNP [dm6]	T	A	5.055e^-5	0.324	UPSTREAM CG12123 INTERGENIC
3R	11003845	3R_11003845_SNP [dm3] 3R_15178123_SNP [dm6]	T	C	5.093e^-5	0.324	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	4990881	3R_4990881_SNP [dm3] 3R_9165159_SNP [dm6]	T	C	5.096e^-5	0.324	INTRON pum
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	5.106e^-5	0.324	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18289835	X_18289835_SNP [dm3] X_18395802_SNP [dm6]	C	G	5.119e^-5	0.324	INTRON CG32549
X	18289836	X_18289836_SNP [dm3] X_18395803_SNP [dm6]	T	C	5.119e^-5	0.324	INTRON CG32549
X	18289850	X_18289850_SNP [dm3] X_18395817_SNP [dm6]	A	G	5.119e^-5	0.324	INTRON CG32549
X	18289859	X_18289859_INS [dm3] X_18395826_INS [dm6]	T	TTTTCGAAAATT...	5.119e^-5	0.324	INTRON CG32549
3R	10163252	3R_10163252_SNP [dm3] 3R_14337530_SNP [dm6]	G	T	5.126e^-5	0.324	INTRON NK7.1
3R	10761962	3R_10761962_SNP [dm3] 3R_14936240_SNP [dm6]	G	A	5.131e^-5	0.324	INTERGENIC
3L	19969516	3L_19969516_SNP [dm3] 3L_19976416_SNP [dm6]	A	C	5.182e^-5	0.324	INTRON Ac76E
3L	2750750	3L_2750750_INS [dm3] 3L_2750750_INS [dm6]	T	TA	5.254e^-5	0.324	INTRON Mrtf
2R	7557872	2R_7557872_SNP [dm3] 2R_11670367_SNP [dm6]	C	T	5.264e^-5	0.324	INTRON Roc2 & 1 other
3R	20359680	3R_20359680_SNP [dm3] 3R_24533958_SNP [dm6]	A	G	5.266e^-5	0.324	NON_SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_cad
3R	14341004	3R_14341004_SNP [dm3] 3R_18515282_SNP [dm6]	A	G	5.273e^-5	0.324	SYNONYMOUS_CODING fru UTR_5_PRIME fru
3R	22897977	3R_22897977_SNP [dm3] 3R_27072255_SNP [dm6]	T	A	5.275e^-5	0.324	INTERGENIC
2R	10229225	2R_10229225_SNP [dm3] 2R_14341720_SNP [dm6]	A	G	5.292e^-5	0.324	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3L	7591654	3L_7591654_SNP [dm3] 3L_7598554_SNP [dm6]	A	G	5.295e^-5	0.324	INTRON CG33275	TF binding site mE1_TFBS_inv
2R	4487675	2R_4487675_SNP [dm3] 2R_8600170_SNP [dm6]	C	A	5.302e^-5	0.324	UPSTREAM rgr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	5139176	3L_5139176_SNP [dm3] 3L_5146076_SNP [dm6]	T	A	5.309e^-5	0.324	UPSTREAM Aats-ala-m & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8340834	3R_8340834_SNP [dm3] 3R_12515112_SNP [dm6]	G	A	5.323e^-5	0.324	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	8236513	3R_8236513_SNP [dm3] 3R_12410791_SNP [dm6]	A	T	5.332e^-5	0.324	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2577054	X_2577054_SNP [dm3] X_2683021_SNP [dm6]	T	C	5.369e^-5	0.324	UPSTREAM CG2652 EXON CR44470
2R	8640883	2R_8640883_SNP [dm3] 2R_12753378_SNP [dm6]	G	T	5.382e^-5	0.324	UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	18479276	3R_18479276_SNP [dm3] 3R_22653554_SNP [dm6]	T	C	5.382e^-5	0.324	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3R	4989157	3R_4989157_SNP [dm3] 3R_9163435_SNP [dm6]	C	A	5.399e^-5	0.324	INTRON pum	TF binding site mE1_TFBS_zfh1
X	21915306	X_21915306_SNP [dm3] X_22513470_SNP [dm6]	G	A	5.401e^-5	0.324	DOWNSTREAM CR43962 INTERGENIC	transposable element FlyBase
3R	17710841	3R_17710841_SNP [dm3] 3R_21885119_SNP [dm6]	C	G	5.412e^-5	0.324	SYNONYMOUS_CODING CG17819 UPSTREAM fit DOWNSTREAM dnd	TF binding site BDTNP1_TFBS_twi
3L	7020689	3L_7020689_SNP [dm3] 3L_7027589_SNP [dm6]	C	T	5.448e^-5	0.324	UPSTREAM CG17744 INTRON Mp
3L	7021101	3L_7021101_SNP [dm3] 3L_7028001_SNP [dm6]	G	A	5.448e^-5	0.324	INTRON Mp
3L	9395701	3L_9395701_SNP [dm3] 3L_9402601_SNP [dm6]	G	A	5.513e^-5	0.325	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17270957	X_17270957_SNP [dm3] X_17376924_SNP [dm6]	T	A	5.515e^-5	0.325	INTERGENIC
X	17615661	X_17615661_SNP [dm3] X_17721628_SNP [dm6]	C	A	5.530e^-5	0.325	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8336603	X_8336603_SNP [dm3] X_8442570_SNP [dm6]	C	T	5.531e^-5	0.325	UPSTREAM CG12123 INTERGENIC
3R	12747456	3R_12747456_SNP [dm3] 3R_16921734_SNP [dm6]	T	G	5.553e^-5	0.326	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	6989688	3L_6989688_SNP [dm3] 3L_6996588_SNP [dm6]	C	G	5.578e^-5	0.326	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7591631	3L_7591631_SNP [dm3] 3L_7598531_SNP [dm6]	T	G	5.588e^-5	0.326	INTRON CG33275
2L	7305741	2L_7305741_SNP [dm3] 2L_7305741_SNP [dm6]	C	T	5.680e^-5	0.327	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17615665	X_17615665_SNP [dm3] X_17721632_SNP [dm6]	T	A	5.680e^-5	0.327	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26093030	3R_26093030_SNP [dm3] 3R_30267308_SNP [dm6]	T	C	5.681e^-5	0.327	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7591648	3L_7591648_SNP [dm3] 3L_7598548_SNP [dm6]	T	A	5.690e^-5	0.327	INTRON CG33275	TF binding site mE1_TFBS_inv
3L	15504272	3L_15504272_SNP [dm3] 3L_15511172_SNP [dm6]	A	G	5.767e^-5	0.331	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25145552	3R_25145552_SNP [dm3] 3R_29319830_SNP [dm6]	A	T	5.831e^-5	0.333	UPSTREAM Cnx99A INTERGENIC
X	18174384	X_18174384_SNP [dm3] X_18280351_SNP [dm6]	C	T	5.836e^-5	0.333	INTRON upd3
3R	15766840	3R_15766840_SNP [dm3] 3R_19941118_SNP [dm6]	C	T	5.850e^-5	0.333	INTRON Hs6st
3R	5001006	3R_5001006_SNP [dm3] 3R_9175284_SNP [dm6]	A	T	5.874e^-5	0.333	INTRON pum
2R	11624833	2R_11624833_SNP [dm3] 2R_15737328_SNP [dm6]	C	T	5.972e^-5	0.335	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5637076	3L_5637076_SNP [dm3] 3L_5643976_SNP [dm6]	G	C	5.985e^-5	0.335	INTRON Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17941481	2L_17941481_SNP [dm3] 2L_17941481_SNP [dm6]	A	C	6.015e^-5	0.335	INTERGENIC
3R	10181528	3R_10181528_SNP [dm3] 3R_14355806_SNP [dm6]	T	G	6.071e^-5	0.335	INTRON NK7.1
3L	13112945	3L_13112945_SNP [dm3] 3L_13119845_SNP [dm6]	A	T	6.072e^-5	0.335	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	24911317	3R_24911317_SNP [dm3] 3R_29085595_SNP [dm6]	C	G	6.083e^-5	0.335	INTRON CG11873
3L	2433510	3L_2433510_SNP [dm3] 3L_2433510_SNP [dm6]	A	G	6.086e^-5	0.335	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18014817	X_18014817_SNP [dm3] X_18120784_SNP [dm6]	C	T	6.139e^-5	0.335	DOWNSTREAM CR45605 EXON CR45605
3R	18389037	3R_18389037_SNP [dm3] 3R_22563315_SNP [dm6]	G	A	6.140e^-5	0.335	UPSTREAM CG5278 INTERGENIC
3R	4992477	3R_4992477_SNP [dm3] 3R_9166755_SNP [dm6]	T	C	6.144e^-5	0.335	INTRON pum
3R	8375615	3R_8375615_SNP [dm3] 3R_12549893_SNP [dm6]	C	A	6.153e^-5	0.335	DOWNSTREAM Octbeta2R INTERGENIC
X	10458134	X_10458134_SNP [dm3] X_10564101_SNP [dm6]	A	G	6.154e^-5	0.335	INTRON spri
2R	12094184	2R_12094184_SNP [dm3] 2R_16206679_SNP [dm6]	C	T	6.172e^-5	0.335	UPSTREAM mrj DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13030782	3R_13030782_SNP [dm3] 3R_17205060_SNP [dm6]	A	T	6.188e^-5	0.335	INTERGENIC
3L	10343224	3L_10343224_SNP [dm3] 3L_10350124_SNP [dm6]	C	T	6.262e^-5	0.335	INTRON CR44327
3L	13220169	3L_13220169_DEL [dm3] 3L_13227069_DEL [dm6]	AA	A	6.275e^-5	0.335	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	18884954	3L_18884954_SNP [dm3] 3L_18891854_SNP [dm6]	G	A	6.292e^-5	0.335	UPSTREAM NijB INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	11549957	3L_11549957_SNP [dm3] 3L_11556857_SNP [dm6]	G	A	6.299e^-5	0.335	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14218128	2R_14218128_SNP [dm3] 2R_18330623_SNP [dm6]	T	A	6.302e^-5	0.335	INTRON sbb
3R	10803630	3R_10803630_SNP [dm3] 3R_14977908_SNP [dm6]	T	G	6.316e^-5	0.335	INTERGENIC
X	9942655	X_9942655_DEL [dm3] X_10048622_DEL [dm6]	AGTTATGACGAAAATTCCGT...	A	6.329e^-5	0.335	UPSTREAM CR45185 & 1 other INTRON Cht6	TF binding site mE1_TFBS_HSA
3L	4029085	3L_4029085_SNP [dm3] 3L_4029085_SNP [dm6]	T	C	6.355e^-5	0.335	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c DOWNSTREAM Gr64a
3R	9435274	3R_9435274_DEL [dm3] 3R_13609552_DEL [dm6]	TAATATAA	T	6.363e^-5	0.335	UPSTREAM CG9759 INTERGENIC
3L	6752669	3L_6752669_SNP [dm3] 3L_6759569_SNP [dm6]	T	C	6.364e^-5	0.335	INTRON CG32392
3R	16428632	3R_16428632_SNP [dm3] 3R_20602910_SNP [dm6]	T	C	6.446e^-5	0.335	INTRON bon
3L	19962531	3L_19962531_SNP [dm3] 3L_19969431_SNP [dm6]	G	A	6.453e^-5	0.335	INTRON Ac76E
2L	12727468	2L_12727468_SNP [dm3] 2L_12727468_SNP [dm6]	G	A	6.503e^-5	0.335	INTRON MRP
3R	26210881	3R_26210881_SNP [dm3] 3R_30385159_SNP [dm6]	T	C	6.508e^-5	0.335	DOWNSTREAM Fer1HCH INTERGENIC
2L	11781928	2L_11781928_SNP [dm3] 2L_11781928_SNP [dm6]	T	A	6.514e^-5	0.335	INTERGENIC
2L	14609519	2L_14609519_DEL [dm3] 2L_14609519_DEL [dm6]	AACACTTGA	A	6.515e^-5	0.335	INTRON osp
3R	15462740	3R_15462740_SNP [dm3] 3R_19637018_SNP [dm6]	G	T	6.526e^-5	0.335	INTRON subdued
3R	24911307	3R_24911307_SNP [dm3] 3R_29085585_SNP [dm6]	T	A	6.533e^-5	0.335	INTRON CG11873
3R	25061331	3R_25061331_SNP [dm3] 3R_29235609_SNP [dm6]	G	A	6.554e^-5	0.335	DOWNSTREAM CG15817 INTRON CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14689959	2R_14689959_SNP [dm3] 2R_18802454_SNP [dm6]	C	T	6.574e^-5	0.335	UTR_5_PRIME l_2_08717 UPSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	9395676	3L_9395676_SNP [dm3] 3L_9402576_SNP [dm6]	T	C	6.574e^-5	0.335	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7450567	2R_7450567_SNP [dm3] 2R_11563062_SNP [dm6]	C	G	6.591e^-5	0.335	INTERGENIC
3R	22086486	3R_22086486_SNP [dm3] 3R_26260764_SNP [dm6]	G	C	6.609e^-5	0.335	UPSTREAM Ald & 1 other INTRON Ald	TF binding site mE1_TFBS_Trl
X	13232472	X_13232472_SNP [dm3] X_13338439_SNP [dm6]	C	T	6.612e^-5	0.335	UPSTREAM RpS15Aa INTRON CG15747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17139738	2R_17139738_SNP [dm3] 2R_21252233_SNP [dm6]	A	G	6.615e^-5	0.335	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	14299554	2L_14299554_SNP [dm3] 2L_14299554_SNP [dm6]	T	C	6.642e^-5	0.335	INTRON wb
3R	9786893	3R_9786893_SNP [dm3] 3R_13961171_SNP [dm6]	A	G	6.663e^-5	0.335	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1899562	3L_1899562_SNP [dm3] 3L_1899562_SNP [dm6]	T	C	6.681e^-5	0.335	DOWNSTREAM CG1887 INTRON CG1887	TF binding site BDTNP1_TFBS_da
2R	4398039	2R_4398039_SNP [dm3] 2R_8510534_SNP [dm6]	T	C	6.682e^-5	0.335	INTRON mtt
3L	9396652	3L_9396652_SNP [dm3] 3L_9403552_SNP [dm6]	A	T	6.700e^-5	0.335	INTERGENIC
2L	7211984	2L_7211984_SNP [dm3] 2L_7211984_SNP [dm6]	T	A	6.731e^-5	0.336	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17523275	3R_17523275_SNP [dm3] 3R_21697553_SNP [dm6]	T	C	6.762e^-5	0.336	INTRON CG31176
2R	13235880	2R_13235880_SNP [dm3] 2R_17348375_SNP [dm6]	C	T	6.783e^-5	0.336	INTRON mbl
3R	8380533	3R_8380533_SNP [dm3] 3R_12554811_SNP [dm6]	G	T	6.787e^-5	0.336	INTRON Octbeta2R
3L	22249370	3L_22249370_SNP [dm3] 3L_22256270_SNP [dm6]	A	G	6.813e^-5	0.336	INTERGENIC
2R	14513513	2R_14513513_SNP [dm3] 2R_18626008_SNP [dm6]	G	A	6.854e^-5	0.336	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
3R	4710234	3R_4710234_SNP [dm3] 3R_8884512_SNP [dm6]	C	T	6.855e^-5	0.336	INTRON pyd	TF binding site mE1_TFBS_HSA
X	18996215	X_18996215_SNP [dm3] X_19102182_SNP [dm6]	T	C	6.865e^-5	0.336	INTERGENIC
2R	16279631	2R_16279631_SNP [dm3] 2R_20392126_SNP [dm6]	A	G	6.872e^-5	0.336	INTERGENIC
3R	13802475	3R_13802475_SNP [dm3] 3R_17976753_SNP [dm6]	T	A	6.896e^-5	0.336	INTRON cpo
3R	13924945	3R_13924945_SNP [dm3] 3R_18099223_SNP [dm6]	C	T	6.929e^-5	0.336	INTRON sr
3R	13256597	3R_13256597_SNP [dm3] 3R_17430875_SNP [dm6]	A	G	6.946e^-5	0.336	INTRON CG5873
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	6.954e^-5	0.336	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5606440	2R_5606440_SNP [dm3] 2R_9718935_SNP [dm6]	G	A	6.967e^-5	0.336	UTR_3_PRIME sqa INTRON sqa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8380671	3R_8380671_SNP [dm3] 3R_12554949_SNP [dm6]	G	A	7.027e^-5	0.338	INTRON Octbeta2R
3R	14146104	3R_14146104_SNP [dm3] 3R_18320382_SNP [dm6]	C	T	7.084e^-5	0.339	INTRON CG31235
2L	2461849	2L_2461849_SNP [dm3] 2L_2461849_SNP [dm6]	A	T	7.100e^-5	0.339	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3802600	3R_3802600_INS [dm3] 3R_7976878_INS [dm6]	T	TATGT	7.107e^-5	0.339	INTRON CD98hc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2307343	2R_2307343_DEL [dm3] 2R_6419838_DEL [dm6]	CAGCGAACTAA...	C	7.121e^-5	0.339	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	8271680	3R_8271680_SNP [dm3] 3R_12445958_SNP [dm6]	A	G	7.133e^-5	0.339	INTRON Desat1
2R	11610957	2R_11610957_SNP [dm3] 2R_15723452_SNP [dm6]	A	T	7.156e^-5	0.339	INTERGENIC
3R	4710266	3R_4710266_SNP [dm3] 3R_8884544_SNP [dm6]	G	A	7.188e^-5	0.34	INTRON pyd	TF binding site mE1_TFBS_HSA
2L	14295500	2L_14295500_SNP [dm3] 2L_14295500_SNP [dm6]	A	T	7.305e^-5	0.342	UPSTREAM CR43640 INTRON wb
2L	10008437	2L_10008437_SNP [dm3] 2L_10008437_SNP [dm6]	G	A	7.314e^-5	0.342	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
3R	13802277	3R_13802277_SNP [dm3] 3R_17976555_SNP [dm6]	A	C	7.323e^-5	0.342	INTRON cpo
2L	8645315	2L_8645315_SNP [dm3] 2L_8645315_SNP [dm6]	G	T	7.324e^-5	0.342	INTRON Sema-1a
3R	16430242	3R_16430242_SNP [dm3] 3R_20604520_SNP [dm6]	G	T	7.331e^-5	0.342	DOWNSTREAM tRNA:CR31506 INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	6034727	2L_6034727_SNP [dm3] 2L_6034727_SNP [dm6]	C	G	7.342e^-5	0.342	UPSTREAM CG9109 DOWNSTREAM mtm INTERGENIC
3L	16738404	3L_16738404_SNP [dm3] 3L_16745304_SNP [dm6]	C	T	7.367e^-5	0.342	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	3858259	X_3858259_SNP [dm3] X_3964226_SNP [dm6]	G	A	7.374e^-5	0.342	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3857762	X_3857762_SNP [dm3] X_3963729_SNP [dm6]	C	A	7.400e^-5	0.342	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11550652	3L_11550652_SNP [dm3] 3L_11557552_SNP [dm6]	A	G	7.483e^-5	0.345	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7376439	3R_7376439_INS [dm3] 3R_11550717_INS [dm6]	A	AACAAGCACAA...	7.503e^-5	0.345	INTERGENIC
3L	18756081	3L_18756081_SNP [dm3] 3L_18762981_SNP [dm6]	G	A	7.541e^-5	0.345	INTRON ftz-f1
3R	9435379	3R_9435379_SNP [dm3] 3R_13609657_SNP [dm6]	A	C	7.558e^-5	0.345	UPSTREAM CG9759 INTERGENIC
X	8336604	X_8336604_SNP [dm3] X_8442571_SNP [dm6]	T	G	7.563e^-5	0.345	UPSTREAM CG12123 INTERGENIC
3L	9948708	3L_9948708_SNP [dm3] 3L_9955608_SNP [dm6]	A	G	7.695e^-5	0.348	SYNONYMOUS_CODING CG34356
X	18736601	X_18736601_SNP [dm3] X_18842568_SNP [dm6]	T	G	7.699e^-5	0.348	UTR_3_PRIME Pvf1
3R	11311745	3R_11311745_SNP [dm3] 3R_15486023_SNP [dm6]	G	C	7.701e^-5	0.348	UPSTREAM CG5205 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
X	18408197	X_18408197_SNP [dm3] X_18514164_SNP [dm6]	G	T	7.729e^-5	0.348	INTRON CG6470
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	7.761e^-5	0.348	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	14059284	3R_14059284_DEL [dm3] 3R_18233562_DEL [dm6]	CC	C	7.768e^-5	0.348	INTERGENIC	regulatory region REDfly_CRMs
2R	2571024	2R_2571024_SNP [dm3] 2R_6683519_SNP [dm6]	A	C	7.804e^-5	0.348	NON_SYNONYMOUS_CODING CG15909 INTRON CG9422 EXON CR44165	TF binding site BDTNP1_TFBS_bcd
2L	18833743	2L_18833743_DEL [dm3] 2L_18833743_DEL [dm6]	TAA	T	7.811e^-5	0.348	UTR_3_PRIME CG10600 DOWNSTREAM ScpX
3L	6596885	3L_6596885_SNP [dm3] 3L_6603785_SNP [dm6]	A	C	7.835e^-5	0.348	UTR_5_PRIME CG8368 UPSTREAM ndl DOWNSTREAM zpg
3R	22445999	3R_22445999_SNP [dm3] 3R_26620277_SNP [dm6]	G	T	7.866e^-5	0.348	DOWNSTREAM TwdlP & 1 other INTERGENIC
X	17270956	X_17270956_SNP [dm3] X_17376923_SNP [dm6]	G	A	7.886e^-5	0.348	INTERGENIC
3R	23475233	3R_23475233_SNP [dm3] 3R_27649511_SNP [dm6]	C	T	7.891e^-5	0.348	UTR_5_PRIME tau INTRON tau
X	21912032	X_21912032_SNP [dm3] X_22510196_SNP [dm6]	G	A	7.909e^-5	0.348	INTERGENIC	transposable element FlyBase
2L	12566025	2L_12566025_SNP [dm3] 2L_12566025_SNP [dm6]	A	C	7.915e^-5	0.348	INTERGENIC
3R	9361240	3R_9361240_SNP [dm3] 3R_13535518_SNP [dm6]	G	C	7.932e^-5	0.348	INTERGENIC
3L	9395811	3L_9395811_SNP [dm3] 3L_9402711_SNP [dm6]	G	T	7.937e^-5	0.348	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2668544	2L_2668544_SNP [dm3] 2L_2668544_SNP [dm6]	A	G	7.942e^-5	0.348	INTERGENIC
3R	1484433	3R_1484433_SNP [dm3] 3R_5658711_SNP [dm6]	C	T	7.955e^-5	0.348	SPLICE_SITE_REGION CG2182 UPSTREAM CR44093 INTRON CG2182	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	24087320	3R_24087320_SNP [dm3] 3R_28261598_SNP [dm6]	G	C	8.082e^-5	0.349	INTERGENIC
2R	18704110	2R_18704110_SNP [dm3] 2R_22816605_SNP [dm6]	A	G	8.153e^-5	0.349	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
3L	17000594	3L_17000594_SNP [dm3] 3L_17007494_SNP [dm6]	G	A	8.196e^-5	0.349	INTRON CG3764
X	20407702	X_20407702_SNP [dm3] X_20536675_SNP [dm6]	A	T	8.212e^-5	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8635952	X_8635952_SNP [dm3] X_8741919_SNP [dm6]	T	A	8.222e^-5	0.349	INTERGENIC
3R	14290156	3R_14290156_DEL [dm3] 3R_18464434_DEL [dm6]	GTGGCAAACCAAATTT...	G	8.241e^-5	0.349	INTRON fru
2L	955937	2L_955937_SNP [dm3] 2L_955937_SNP [dm6]	C	A	8.257e^-5	0.349	INTRON CG4341
3R	11003804	3R_11003804_SNP [dm3] 3R_15178082_SNP [dm6]	A	T	8.287e^-5	0.349	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	4994902	3R_4994902_SNP [dm3] 3R_9169180_SNP [dm6]	A	C	8.287e^-5	0.349	INTRON pum
3L	19967126	3L_19967126_DEL [dm3] 3L_19974026_DEL [dm6]	TATCTAATGTTGAA...	T	8.289e^-5	0.349	INTRON Ac76E
3R	4952739	3R_4952739_SNP [dm3] 3R_9127017_SNP [dm6]	G	C	8.299e^-5	0.349	INTRON pum
2L	1101655	2L_1101655_SNP [dm3] 2L_1101655_SNP [dm6]	T	C	8.301e^-5	0.349	INTRON CG4629
3L	5903378	3L_5903378_SNP [dm3] 3L_5910278_SNP [dm6]	C	T	8.312e^-5	0.349	DOWNSTREAM CG13288 INTRON CG13288
3R	17062951	3R_17062951_SNP [dm3] 3R_21237229_SNP [dm6]	G	T	8.363e^-5	0.349	UPSTREAM e INTERGENIC
3R	22897978	3R_22897978_SNP [dm3] 3R_27072256_SNP [dm6]	G	T	8.372e^-5	0.349	INTERGENIC
2R	15275373	2R_15275373_SNP [dm3] 2R_19387868_SNP [dm6]	A	G	8.402e^-5	0.349	SYNONYMOUS_CODING CG10081
X	8336499	X_8336499_SNP [dm3] X_8442466_SNP [dm6]	C	T	8.408e^-5	0.349	UPSTREAM CG12123 INTERGENIC
3L	10002143	3L_10002143_SNP [dm3] 3L_10009043_SNP [dm6]	A	C	8.463e^-5	0.349	INTRON dpr6
X	4807838	X_4807838_SNP [dm3] X_4913805_SNP [dm6]	A	T	8.465e^-5	0.349	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9426785	3L_9426785_INS [dm3] 3L_9433685_INS [dm6]	T	TT	8.473e^-5	0.349	UTR_3_PRIME CG42526 INTRON MTF-1
3L	5903135	3L_5903135_SNP [dm3] 3L_5910035_SNP [dm6]	G	A	8.489e^-5	0.349	DOWNSTREAM CG13288 INTRON CG13288
X	17615720	X_17615720_SNP [dm3] X_17721687_SNP [dm6]	C	T	8.490e^-5	0.349	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2R	13172734	2R_13172734_SNP [dm3] 2R_17285229_SNP [dm6]	C	G	8.499e^-5	0.349	INTRON mbl
3R	25814976	3R_25814976_SNP [dm3] 3R_29989254_SNP [dm6]	C	T	8.510e^-5	0.349	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10680858	2R_10680858_SNP [dm3] 2R_14793353_SNP [dm6]	A	T	8.517e^-5	0.349	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	7720904	2R_7720904_SNP [dm3] 2R_11833399_SNP [dm6]	T	A	8.519e^-5	0.349	INTRON Sobp
X	17299361	X_17299361_SNP [dm3] X_17405328_SNP [dm6]	T	C	8.533e^-5	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	8.569e^-5	0.349	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
3R	24167202	3R_24167202_SNP [dm3] 3R_28341480_SNP [dm6]	A	G	8.644e^-5	0.349	UTR_5_PRIME Moca-cyp INTRON Moca-cyp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	18177404	X_18177404_DEL [dm3] X_18283371_DEL [dm6]	CCAATC	C	8.651e^-5	0.349	INTRON upd3
X	18902691	X_18902691_SNP [dm3] X_19008658_SNP [dm6]	T	C	8.677e^-5	0.349	INTRON CG43759
X	21912024	X_21912024_SNP [dm3] X_22510188_SNP [dm6]	A	T	8.687e^-5	0.349	INTERGENIC	transposable element FlyBase
3L	14400868	3L_14400868_SNP [dm3] 3L_14407768_SNP [dm6]	C	A	8.708e^-5	0.349	INTRON stwl	TF binding site BDTNP1_TFBS_dl
2R	11625089	2R_11625089_SNP [dm3] 2R_15737584_SNP [dm6]	T	G	8.713e^-5	0.349	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22189392	3L_22189392_SNP [dm3] 3L_22196292_SNP [dm6]	G	A	8.722e^-5	0.349	INTRON olf413
3R	17663061	3R_17663061_DEL [dm3] 3R_21837339_DEL [dm6]	CC	C	8.723e^-5	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1293929	2L_1293929_SNP [dm3] 2L_1293929_SNP [dm6]	A	T	8.731e^-5	0.349	UTR_3_PRIME robo3
2R	7450544	2R_7450544_SNP [dm3] 2R_11563039_SNP [dm6]	G	T	8.747e^-5	0.349	INTERGENIC
2L	529954	2L_529954_SNP [dm3] 2L_529954_SNP [dm6]	T	C	8.808e^-5	0.349	INTRON ush	regulatory region REDfly_CRMs
3L	21397522	3L_21397522_SNP [dm3] 3L_21404422_SNP [dm6]	C	T	8.840e^-5	0.349	INTRON rgn
X	12493569	X_12493569_SNP [dm3] X_12599536_SNP [dm6]	G	T	8.877e^-5	0.349	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	529905	2L_529905_SNP [dm3] 2L_529905_SNP [dm6]	T	G	8.911e^-5	0.349	INTRON ush	regulatory region REDfly_CRMs
3R	25818009	3R_25818009_SNP [dm3] 3R_29992287_SNP [dm6]	G	T	8.932e^-5	0.349	SYNONYMOUS_CODING Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1756602	3R_1756602_SNP [dm3] 3R_5930880_SNP [dm6]	A	G	8.937e^-5	0.349	INTRON CG34113
3L	10491497	3L_10491497_SNP [dm3] 3L_10498397_SNP [dm6]	G	C	8.942e^-5	0.349	INTRON A2bp1
3L	18884886	3L_18884886_SNP [dm3] 3L_18891786_SNP [dm6]	C	T	8.983e^-5	0.349	UPSTREAM NijB INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	16390572	2R_16390572_SNP [dm3] 2R_20503067_SNP [dm6]	A	T	8.985e^-5	0.349	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
3R	4710210	3R_4710210_SNP [dm3] 3R_8884488_SNP [dm6]	G	T	9.014e^-5	0.349	INTRON pyd	TF binding site mE1_TFBS_HSA
3R	25145594	3R_25145594_SNP [dm3] 3R_29319872_SNP [dm6]	T	C	9.019e^-5	0.349	UPSTREAM Cnx99A INTERGENIC
3L	14825977	3L_14825977_SNP [dm3] 3L_14832877_SNP [dm6]	C	A	9.026e^-5	0.349	INTRON CG17839
3R	10119234	3R_10119234_SNP [dm3] 3R_14293512_SNP [dm6]	T	G	9.087e^-5	0.349	INTRON CG12207
X	17615786	X_17615786_DEL [dm3] X_17721753_DEL [dm6]	AAA	A	9.094e^-5	0.349	INTRON CG42684
2R	9043566	2R_9043566_SNP [dm3] 2R_13156061_SNP [dm6]	T	G	9.110e^-5	0.349	INTRON TppII
3R	20259065	3R_20259065_SNP [dm3] 3R_24433343_SNP [dm6]	T	C	9.115e^-5	0.349	INTRON nAChRalpha1
X	17858644	X_17858644_SNP [dm3] X_17964611_SNP [dm6]	G	A	9.127e^-5	0.349	INTRON Sh
3R	9435305	3R_9435305_SNP [dm3] 3R_13609583_SNP [dm6]	A	G	9.145e^-5	0.349	UPSTREAM CG9759 INTERGENIC
3R	3352922	3R_3352922_SNP [dm3] 3R_7527200_SNP [dm6]	C	T	9.148e^-5	0.349	INTRON alpha-Est6 EXON alpha-Est4aPsi
3R	9786981	3R_9786981_SNP [dm3] 3R_13961259_SNP [dm6]	T	G	9.156e^-5	0.349	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11572456	2L_11572456_SNP [dm3] 2L_11572456_SNP [dm6]	A	G	9.165e^-5	0.349	INTERGENIC
2L	2572263	2L_2572263_SNP [dm3] 2L_2572263_SNP [dm6]	T	G	9.170e^-5	0.349	INTRON Cyp309a2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	19003743	X_19003743_SNP [dm3] X_19109710_SNP [dm6]	G	T	9.175e^-5	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14146171	3R_14146171_SNP [dm3] 3R_18320449_SNP [dm6]	C	T	9.176e^-5	0.349	INTRON CG31235
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	9.181e^-5	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7450561	2R_7450561_SNP [dm3] 2R_11563056_SNP [dm6]	G	A	9.200e^-5	0.349	INTERGENIC
2R	20359856	2R_20359856_DEL [dm3] 2R_24472333_DEL [dm6]	GACGTG	G	9.210e^-5	0.349	UPSTREAM CG3492 INTRON CG13579
X	17636828	X_17636828_SNP [dm3] X_17742795_SNP [dm6]	G	C	9.215e^-5	0.349	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	529967	2L_529967_SNP [dm3] 2L_529967_SNP [dm6]	T	G	9.268e^-5	0.35	INTRON ush	regulatory region REDfly_CRMs
2L	1286926	2L_1286926_SNP [dm3] 2L_1286926_SNP [dm6]	C	A	9.301e^-5	0.35	NON_SYNONYMOUS_CODING robo3
3R	10188905	3R_10188905_SNP [dm3] 3R_14363183_SNP [dm6]	T	C	9.305e^-5	0.35	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13999232	2L_13999232_SNP [dm3] 2L_13999232_SNP [dm6]	T	G	9.321e^-5	0.35	INTRON rk
2L	3127883	2L_3127883_SNP [dm3] 2L_3127883_SNP [dm6]	T	C	9.401e^-5	0.353	UPSTREAM CG15403 INTRON toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18615227	3R_18615227_SNP [dm3] 3R_22789505_SNP [dm6]	C	T	9.446e^-5	0.354	SYNONYMOUS_CODING CG7029 INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	13350610	2R_13350610_SNP [dm3] 2R_17463105_SNP [dm6]	A	G	9.502e^-5	0.354	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	16089686	3L_16089686_SNP [dm3] 3L_16096586_SNP [dm6]	G	A	9.571e^-5	0.354	SYNONYMOUS_CODING CG13074 DOWNSTREAM ClC-c	TF binding site mE1_TFBS_cad
3L	9395707	3L_9395707_SNP [dm3] 3L_9402607_SNP [dm6]	T	C	9.584e^-5	0.354	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17789953	3R_17789953_SNP [dm3] 3R_21964231_SNP [dm6]	G	T	9.588e^-5	0.354	INTRON Eip93F
2R	13235885	2R_13235885_SNP [dm3] 2R_17348380_SNP [dm6]	G	A	9.590e^-5	0.354	INTRON mbl
X	18063651	X_18063651_SNP [dm3] X_18169618_SNP [dm6]	C	A	9.621e^-5	0.354	INTRON Frq1
2L	1101647	2L_1101647_SNP [dm3] 2L_1101647_SNP [dm6]	T	A	9.632e^-5	0.354	INTRON CG4629
X	18289843	X_18289843_SNP [dm3] X_18395810_SNP [dm6]	G	A	9.639e^-5	0.354	INTRON CG32549
3R	13162315	3R_13162315_SNP [dm3] 3R_17336593_SNP [dm6]	C	A	9.649e^-5	0.354	INTRON beat-IIa
3R	17522949	3R_17522949_SNP [dm3] 3R_21697227_SNP [dm6]	C	A	9.660e^-5	0.354	INTRON CG31176
2R	14090581	2R_14090581_SNP [dm3] 2R_18203076_SNP [dm6]	T	A	9.680e^-5	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17879003	3R_17879003_SNP [dm3] 3R_22053281_SNP [dm6]	G	A	9.687e^-5	0.354	INTRON how	regulatory region REDfly_CRMs
3R	4987409	3R_4987409_INS [dm3] 3R_9161687_INS [dm6]	A	ACAGTATAATTCGCTTAGCT...	9.706e^-5	0.354	INTRON pum
2R	17285352	2R_17285352_INS [dm3] 2R_21397847_INS [dm6]	T	GGAAA	9.733e^-5	0.354	INTRON Sdc
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	9.767e^-5	0.354	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
3R	6836567	3R_6836567_SNP [dm3] 3R_11010845_SNP [dm6]	A	G	9.798e^-5	0.354	INTRON CG34114
3R	15766677	3R_15766677_SNP [dm3] 3R_19940955_SNP [dm6]	G	A	9.803e^-5	0.354	INTRON Hs6st
2R	4487527	2R_4487527_SNP [dm3] 2R_8600022_SNP [dm6]	A	T	9.840e^-5	0.354	UPSTREAM rgr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	7591646	3L_7591646_SNP [dm3] 3L_7598546_SNP [dm6]	T	C	9.861e^-5	0.354	INTRON CG33275	TF binding site mE1_TFBS_inv
3R	6836534	3R_6836534_DEL [dm3] 3R_11010812_DEL [dm6]	TGTCAACTCCAAATTTACCC...	T	9.881e^-5	0.354	INTRON CG34114
3R	6836565	3R_6836565_SNP [dm3] 3R_11010843_SNP [dm6]	A	T	9.881e^-5	0.354	INTRON CG34114
2L	18590681	2L_18590681_SNP [dm3] 2L_18590681_SNP [dm6]	A	C	9.899e^-5	0.354	UPSTREAM CG15160 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6832974	3R_6832974_SNP [dm3] 3R_11007252_SNP [dm6]	G	A	9.913e^-5	0.354	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8156303	3R_8156303_SNP [dm3] 3R_12330581_SNP [dm6]	T	A	9.949e^-5	0.354	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14315414	2L_14315414_SNP [dm3] 2L_14315414_SNP [dm6]	T	C	9.959e^-5	0.354	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14315415	2L_14315415_DEL [dm3] 2L_14315415_DEL [dm6]	TT	T	9.959e^-5	0.354	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6450302	2L_6450302_SNP [dm3] 2L_6450302_SNP [dm6]	A	G	1.002e^-4	0.354	INTRON retm
2L	7211167	2L_7211167_SNP [dm3] 2L_7211167_SNP [dm6]	G	C	1.004e^-4	0.354	INTRON CG13784
3R	19865181	3R_19865181_SNP [dm3] 3R_24039459_SNP [dm6]	T	C	1.005e^-4	0.354	UPSTREAM Miro INTRON spas	TF binding site BDTNP1_TFBS_dl
3R	1592790	3R_1592790_SNP [dm3] 3R_5767068_SNP [dm6]	A	C	1.006e^-4	0.354	INTRON CG2082	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1725002	3R_1725002_SNP [dm3] 3R_5899280_SNP [dm6]	A	C	1.008e^-4	0.354	INTRON CG34113
3R	22713939	3R_22713939_SNP [dm3] 3R_26888217_SNP [dm6]	T	A	1.010e^-4	0.354	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23882793	3R_23882793_SNP [dm3] 3R_28057071_SNP [dm6]	A	C	1.015e^-4	0.354	INTRON CG34362
3R	18921063	3R_18921063_SNP [dm3] 3R_23095341_SNP [dm6]	G	T	1.016e^-4	0.354	UTR_3_PRIME CG17110 UPSTREAM CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830	TF binding site mE1_TFBS_inv
X	18996218	X_18996218_SNP [dm3] X_19102185_SNP [dm6]	G	A	1.016e^-4	0.354	INTERGENIC
2L	496693	2L_496693_SNP [dm3] 2L_496693_SNP [dm6]	C	T	1.017e^-4	0.354	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1480033	2L_1480033_SNP [dm3] 2L_1480033_SNP [dm6]	C	A	1.018e^-4	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18064005	X_18064005_SNP [dm3] X_18169972_SNP [dm6]	T	A	1.018e^-4	0.354	INTRON Frq1
2L	14694475	2L_14694475_SNP [dm3] 2L_14694475_SNP [dm6]	T	C	1.020e^-4	0.354	INTERGENIC
X	8899574	X_8899574_SNP [dm3] X_9005541_SNP [dm6]	C	G	1.022e^-4	0.354	INTRON rdgA & 1 other
3R	17523017	3R_17523017_SNP [dm3] 3R_21697295_SNP [dm6]	C	T	1.024e^-4	0.354	INTRON CG31176
2L	3804904	2L_3804904_SNP [dm3] 2L_3804904_SNP [dm6]	C	A	1.025e^-4	0.354	UPSTREAM Reph INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19028832	3R_19028832_SNP [dm3] 3R_23203110_SNP [dm6]	T	G	1.025e^-4	0.354	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16231016	2L_16231016_MNP [dm3] 2L_16231016_MNP [dm6]	GGA	AAT	1.036e^-4	0.357	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5808399	X_5808399_SNP [dm3] X_5914366_SNP [dm6]	G	A	1.039e^-4	0.357	SYNONYMOUS_CODING CG3011 UPSTREAM CR44108	TF binding site mE1_TFBS_cad
3R	14125081	3R_14125081_SNP [dm3] 3R_18299359_SNP [dm6]	C	T	1.040e^-4	0.357	UTR_5_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13076985	3L_13076985_SNP [dm3] 3L_13083885_SNP [dm6]	G	A	1.043e^-4	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	16865016	2L_16865016_SNP [dm3] 2L_16865016_SNP [dm6]	A	G	1.046e^-4	0.357	INTERGENIC
2R	16062008	2R_16062008_SNP [dm3] 2R_20174503_SNP [dm6]	G	A	1.053e^-4	0.358	INTERGENIC
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	1.054e^-4	0.358	INTRON Dh31-R
2R	5287488	2R_5287488_SNP [dm3] 2R_9399983_SNP [dm6]	C	A	1.055e^-4	0.358	SYNONYMOUS_CODING CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
X	18064355	X_18064355_SNP [dm3] X_18170322_SNP [dm6]	T	C	1.059e^-4	0.359	UTR_3_PRIME Frq1
3R	4265831	3R_4265831_SNP [dm3] 3R_8440109_SNP [dm6]	T	C	1.062e^-4	0.36	INTRON CG45263
3L	12702431	3L_12702431_SNP [dm3] 3L_12709331_SNP [dm6]	C	A	1.065e^-4	0.36	UTR_3_PRIME mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	14125359	3R_14125359_SNP [dm3] 3R_18299637_SNP [dm6]	T	C	1.069e^-4	0.361	SYNONYMOUS_CODING Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	3833744	2L_3833744_SNP [dm3] 2L_3833744_SNP [dm6]	C	A	1.073e^-4	0.361	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1098507	2L_1098507_SNP [dm3] 2L_1098507_SNP [dm6]	G	C	1.075e^-4	0.361	INTRON CG4629
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	1.075e^-4	0.361	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
2R	13891454	2R_13891454_SNP [dm3] 2R_18003949_SNP [dm6]	C	A	1.086e^-4	0.361	INTRON dpr13
X	13127204	X_13127204_SNP [dm3] X_13233171_SNP [dm6]	C	G	1.086e^-4	0.361	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16869575	X_16869575_SNP [dm3] X_16975542_SNP [dm6]	T	C	1.086e^-4	0.361	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14260449	2L_14260449_SNP [dm3] 2L_14260449_SNP [dm6]	C	T	1.087e^-4	0.361	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	9773880	3R_9773880_SNP [dm3] 3R_13948158_SNP [dm6]	A	G	1.088e^-4	0.361	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4966701	2R_4966701_SNP [dm3] 2R_9079196_SNP [dm6]	C	T	1.088e^-4	0.361	INTRON CG8083
2L	16383992	2L_16383992_SNP [dm3] 2L_16383992_SNP [dm6]	A	G	1.091e^-4	0.361	INTERGENIC
2R	4487696	2R_4487696_SNP [dm3] 2R_8600191_SNP [dm6]	A	G	1.094e^-4	0.361	UPSTREAM rgr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	17270853	X_17270853_SNP [dm3] X_17376820_SNP [dm6]	A	T	1.094e^-4	0.361	INTERGENIC
3R	10153905	3R_10153905_SNP [dm3] 3R_14328183_SNP [dm6]	C	A	1.095e^-4	0.361	UTR_5_PRIME spn-B DOWNSTREAM CG3321	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16276229	2L_16276229_SNP [dm3] 2L_16276229_SNP [dm6]	A	T	1.101e^-4	0.362	INTRON crp	TF binding site BDTNP1_TFBS_dl
3L	12290917	3L_12290917_SNP [dm3] 3L_12297817_SNP [dm6]	C	T	1.102e^-4	0.362	INTERGENIC	TF binding site mE1_TFBS_cad
X	18064500	X_18064500_SNP [dm3] X_18170467_SNP [dm6]	A	T	1.105e^-4	0.362	UTR_3_PRIME Frq1
3R	23266448	3R_23266448_SNP [dm3] 3R_27440726_SNP [dm6]	A	C	1.107e^-4	0.362	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	18173728	X_18173728_SNP [dm3] X_18279695_SNP [dm6]	C	T	1.110e^-4	0.362	NON_SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8342670	3R_8342670_DEL [dm3] 3R_12516948_DEL [dm6]	CCGACTGCGC	C	1.113e^-4	0.362	CODON_DELETION Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18559923	3L_18559923_SNP [dm3] 3L_18566823_SNP [dm6]	A	T	1.113e^-4	0.362	INTRON AstC-R1
3R	17552099	3R_17552099_SNP [dm3] 3R_21726377_SNP [dm6]	A	G	1.122e^-4	0.362	INTERGENIC
X	18446054	X_18446054_SNP [dm3] X_18552021_SNP [dm6]	A	G	1.122e^-4	0.362	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6980236	3L_6980236_SNP [dm3] 3L_6987136_SNP [dm6]	A	C	1.130e^-4	0.362	INTERGENIC
2L	5559914	2L_5559914_SNP [dm3] 2L_5559914_SNP [dm6]	G	C	1.137e^-4	0.362	DOWNSTREAM GluRIIA INTRON GluRIIB	TF binding site mE1_TFBS_inv
X	11076567	X_11076567_SNP [dm3] X_11182534_SNP [dm6]	C	A	1.138e^-4	0.362	UPSTREAM CG15200 INTERGENIC
X	17297084	X_17297084_SNP [dm3] X_17403051_SNP [dm6]	A	C	1.139e^-4	0.362	UTR_3_PRIME B-H1
2R	5287494	2R_5287494_SNP [dm3] 2R_9399989_SNP [dm6]	C	G	1.139e^-4	0.362	SYNONYMOUS_CODING CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	13647609	3R_13647609_DEL [dm3] 3R_17821887_DEL [dm6]	TTT	T	1.140e^-4	0.362	SPLICE_SITE_REGION tinc INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	2621662	3L_2621662_SNP [dm3] 3L_2621662_SNP [dm6]	C	A	1.140e^-4	0.362	INTRON Pxn
3L	22249961	3L_22249961_SNP [dm3] 3L_22256861_SNP [dm6]	G	A	1.141e^-4	0.362	DOWNSTREAM Rich INTERGENIC
X	4775626	X_4775626_SNP [dm3] X_4881593_SNP [dm6]	T	C	1.141e^-4	0.362	INTRON CG42594	TF binding site mE1_TFBS_HSA
3L	13220185	3L_13220185_SNP [dm3] 3L_13227085_SNP [dm6]	T	C	1.141e^-4	0.362	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	2281745	3L_2281745_SNP [dm3] 3L_2281745_SNP [dm6]	C	T	1.142e^-4	0.362	INTERGENIC
2L	16231029	2L_16231029_SNP [dm3] 2L_16231029_SNP [dm6]	G	A	1.142e^-4	0.362	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14844884	2L_14844884_DEL [dm3] 2L_14844884_DEL [dm6]	GGG	G	1.143e^-4	0.362	DOWNSTREAM CG15279 INTERGENIC
3L	13220164	3L_13220164_SNP [dm3] 3L_13227064_SNP [dm6]	A	G	1.144e^-4	0.362	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	2007974	2L_2007974_SNP [dm3] 2L_2007974_SNP [dm6]	T	C	1.145e^-4	0.362	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
3R	9733360	3R_9733360_SNP [dm3] 3R_13907638_SNP [dm6]	G	A	1.149e^-4	0.362	INTERGENIC
3R	10503357	3R_10503357_SNP [dm3] 3R_14677635_SNP [dm6]	T	C	1.149e^-4	0.362	INTRON Meltrin
3L	13277802	3L_13277802_SNP [dm3] 3L_13284702_SNP [dm6]	A	G	1.151e^-4	0.362	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
2R	9139485	2R_9139485_SNP [dm3] 2R_13251980_SNP [dm6]	C	T	1.158e^-4	0.363	SYNONYMOUS_CODING CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
3R	26210845	3R_26210845_SNP [dm3] 3R_30385123_SNP [dm6]	C	T	1.159e^-4	0.363	DOWNSTREAM Fer1HCH INTERGENIC	TF binding site mE1_TFBS_Kr
X	2699294	X_2699294_INS [dm3] X_2805261_INS [dm6]	T	TGATAATA	1.160e^-4	0.363	INTRON kirre
3L	7983165	3L_7983165_SNP [dm3] 3L_7990065_SNP [dm6]	G	A	1.171e^-4	0.363	INTRON nmo
3L	10850113	3L_10850113_SNP [dm3] 3L_10857013_SNP [dm6]	A	G	1.172e^-4	0.363	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	13702213	2R_13702213_SNP [dm3] 2R_17814708_SNP [dm6]	A	T	1.177e^-4	0.363	SYNONYMOUS_CODING grh INTRON grh
3R	10152443	3R_10152443_DEL [dm3] 3R_14326721_DEL [dm6]	AA	A	1.178e^-4	0.363	UPSTREAM CG3321 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14143883	3R_14143883_SNP [dm3] 3R_18318161_SNP [dm6]	A	G	1.180e^-4	0.363	INTRON CG31235
X	16652785	X_16652785_DEL [dm3] X_16758752_DEL [dm6]	TT	T	1.180e^-4	0.363	INTRON if
3L	4614637	3L_4614637_SNP [dm3] 3L_4614637_SNP [dm6]	T	C	1.182e^-4	0.363	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2L	955923	2L_955923_SNP [dm3] 2L_955923_SNP [dm6]	G	T	1.186e^-4	0.363	INTRON CG4341
3L	14400880	3L_14400880_SNP [dm3] 3L_14407780_SNP [dm6]	A	T	1.192e^-4	0.363	INTRON stwl	TF binding site BDTNP1_TFBS_dl
2R	14440871	2R_14440871_DEL [dm3] 2R_18553366_DEL [dm6]	GG	G	1.197e^-4	0.363	DOWNSTREAM GEFmeso INTERGENIC
3R	5014606	3R_5014606_SNP [dm3] 3R_9188884_SNP [dm6]	A	C	1.198e^-4	0.363	INTRON pum
2L	3804278	2L_3804278_SNP [dm3] 2L_3804278_SNP [dm6]	G	C	1.198e^-4	0.363	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18560175	3L_18560175_DEL [dm3] 3L_18567075_DEL [dm6]	TGGGCCCGCGCCATTGG...	T	1.200e^-4	0.363	INTRON AstC-R1
2L	8893464	2L_8893464_SNP [dm3] 2L_8893464_SNP [dm6]	C	A	1.200e^-4	0.363	INTERGENIC
2R	12638964	2R_12638964_SNP [dm3] 2R_16751459_SNP [dm6]	T	A	1.200e^-4	0.363	UTR_5_PRIME Acp53C14c DOWNSTREAM unc-104
2L	14694482	2L_14694482_SNP [dm3] 2L_14694482_SNP [dm6]	T	C	1.201e^-4	0.363	INTERGENIC
2R	13349884	2R_13349884_DEL [dm3] 2R_17462379_DEL [dm6]	GAG	G	1.202e^-4	0.363	UTR_5_PRIME CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18615038	3R_18615038_SNP [dm3] 3R_22789316_SNP [dm6]	C	A	1.217e^-4	0.363	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1411450	3L_1411450_SNP [dm3] 3L_1411450_SNP [dm6]	C	T	1.217e^-4	0.363	SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11961837	3R_11961837_SNP [dm3] 3R_16136115_SNP [dm6]	T	A	1.225e^-4	0.363	INTRON Sb	TF binding site mE1_TFBS_cnc
2L	526695	2L_526695_SNP [dm3] 2L_526695_SNP [dm6]	T	G	1.225e^-4	0.363	INTRON ush	regulatory region REDfly_CRMs
2R	13788851	2R_13788851_SNP [dm3] 2R_17901346_SNP [dm6]	A	T	1.226e^-4	0.363	INTRON Elk
3R	4994364	3R_4994364_INS [dm3] 3R_9168642_INS [dm6]	A	ATGA	1.227e^-4	0.363	INTRON pum
3R	23338233	3R_23338233_SNP [dm3] 3R_27512511_SNP [dm6]	T	C	1.227e^-4	0.363	INTERGENIC
3L	12892903	3L_12892903_SNP [dm3] 3L_12899803_SNP [dm6]	T	C	1.231e^-4	0.363	INTERGENIC
2L	16232874	2L_16232874_SNP [dm3] 2L_16232874_SNP [dm6]	T	C	1.239e^-4	0.363	INTRON CG42817
3L	12932400	3L_12932400_SNP [dm3] 3L_12939300_SNP [dm6]	T	A	1.240e^-4	0.363	INTERGENIC
2L	18590675	2L_18590675_SNP [dm3] 2L_18590675_SNP [dm6]	C	A	1.243e^-4	0.363	UPSTREAM CG15160 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2900959	2R_2900959_SNP [dm3] 2R_7013454_SNP [dm6]	C	T	1.245e^-4	0.363	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl
3L	18559982	3L_18559982_SNP [dm3] 3L_18566882_SNP [dm6]	T	C	1.247e^-4	0.363	INTRON AstC-R1
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	1.252e^-4	0.363	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3L	14400917	3L_14400917_SNP [dm3] 3L_14407817_SNP [dm6]	A	T	1.256e^-4	0.363	INTRON stwl
3L	14400923	3L_14400923_DEL [dm3] 3L_14407823_DEL [dm6]	ATAGTT	A	1.256e^-4	0.363	INTRON stwl
2L	14315551	2L_14315551_SNP [dm3] 2L_14315551_SNP [dm6]	G	T	1.257e^-4	0.363	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	19961534	3L_19961534_SNP [dm3] 3L_19968434_SNP [dm6]	T	A	1.261e^-4	0.363	INTRON Ac76E
3R	9582662	3R_9582662_SNP [dm3] 3R_13756940_SNP [dm6]	G	T	1.263e^-4	0.363	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383 INTRON CG34383
3R	20502841	3R_20502841_SNP [dm3] 3R_24677119_SNP [dm6]	C	G	1.264e^-4	0.363	INTRON slo
2R	4397906	2R_4397906_SNP [dm3] 2R_8510401_SNP [dm6]	G	A	1.265e^-4	0.363	INTRON mtt	TF binding site mE1_TFBS_chinmo
3R	24025003	3R_24025003_SNP [dm3] 3R_28199281_SNP [dm6]	G	T	1.266e^-4	0.363	INTRON CG34354
2R	2419358	2R_2419358_SNP [dm3] 2R_6531853_SNP [dm6]	G	T	1.266e^-4	0.363	DOWNSTREAM CR43905 INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12727447	2L_12727447_SNP [dm3] 2L_12727447_SNP [dm6]	C	T	1.269e^-4	0.363	INTRON MRP
3R	8341839	3R_8341839_DEL [dm3] 3R_12516117_DEL [dm6]	AGGAACTTAAATACACAATT...	A	1.270e^-4	0.363	INTRON Octbeta3R
3L	16683014	3L_16683014_INS [dm3] 3L_16689914_INS [dm6]	A	AA	1.271e^-4	0.363	DOWNSTREAM CR45179 INTRON Lasp & 2 others
3L	9395675	3L_9395675_SNP [dm3] 3L_9402575_SNP [dm6]	G	A	1.271e^-4	0.363	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9932352	2L_9932352_SNP [dm3] 2L_9932352_SNP [dm6]	C	T	1.275e^-4	0.363	UTR_3_PRIME Cpr30F
3R	4952758	3R_4952758_SNP [dm3] 3R_9127036_SNP [dm6]	T	G	1.277e^-4	0.363	INTRON pum
3R	4196844	3R_4196844_SNP [dm3] 3R_8371122_SNP [dm6]	T	A	1.279e^-4	0.363	INTRON CG45263
X	19165092	X_19165092_INS [dm3] X_19271059_INS [dm6]	T	TATTT	1.279e^-4	0.363	INTRON Vav
X	15175062	X_15175062_SNP [dm3] X_15281029_SNP [dm6]	T	A	1.282e^-4	0.363	INTERGENIC
X	15771832	X_15771832_SNP [dm3] X_15877799_SNP [dm6]	A	C	1.284e^-4	0.363	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12545312	3R_12545312_SNP [dm3] 3R_16719590_SNP [dm6]	A	G	1.285e^-4	0.363	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	4375436	3R_4375436_DEL [dm3] 3R_8549714_DEL [dm6]	CTTAAAGCCA	C	1.286e^-4	0.363	INTERGENIC
3L	18158179	3L_18158179_SNP [dm3] 3L_18165079_SNP [dm6]	T	C	1.287e^-4	0.363	INTERGENIC
2R	6461589	2R_6461589_SNP [dm3] 2R_10574084_SNP [dm6]	C	T	1.290e^-4	0.363	INTRON psq
2R	6663668	2R_6663668_SNP [dm3] 2R_10776163_SNP [dm6]	T	G	1.291e^-4	0.363	INTRON CG33144
3L	8509568	3L_8509568_SNP [dm3] 3L_8516468_SNP [dm6]	G	A	1.294e^-4	0.363	INTRON CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3849889	3R_3849889_SNP [dm3] 3R_8024167_SNP [dm6]	C	T	1.295e^-4	0.363	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16789085	X_16789085_SNP [dm3] X_16895052_SNP [dm6]	G	A	1.295e^-4	0.363	INTERGENIC
2L	1860789	2L_1860789_SNP [dm3] 2L_1860789_SNP [dm6]	T	C	1.296e^-4	0.363	INTRON CG31663
3L	10723084	3L_10723084_INS [dm3] 3L_10729984_INS [dm6]	T	TATTAAATAAATTT...	1.300e^-4	0.363	INTERGENIC
3R	23844200	3R_23844200_SNP [dm3] 3R_28018478_SNP [dm6]	G	A	1.306e^-4	0.363	INTERGENIC
2L	2461847	2L_2461847_SNP [dm3] 2L_2461847_SNP [dm6]	A	T	1.306e^-4	0.363	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17028470	3L_17028470_SNP [dm3] 3L_17035370_SNP [dm6]	G	A	1.308e^-4	0.363	UPSTREAM beg INTERGENIC
3L	12425046	3L_12425046_INS [dm3] 3L_12431946_INS [dm6]	T	TTATTGTGTCTGCTAGT...	1.309e^-4	0.363	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	1025473	2L_1025473_SNP [dm3] 2L_1025473_SNP [dm6]	T	C	1.312e^-4	0.363	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9043673	2R_9043673_SNP [dm3] 2R_13156168_SNP [dm6]	T	C	1.315e^-4	0.363	SYNONYMOUS_CODING TppII
2R	16738563	2R_16738563_SNP [dm3] 2R_20851058_SNP [dm6]	A	G	1.315e^-4	0.363	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13819084	3R_13819084_DEL [dm3] 3R_17993362_DEL [dm6]	GCGACAGG	G	1.318e^-4	0.363	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8275300	2L_8275300_SNP [dm3] 2L_8275300_SNP [dm6]	T	G	1.319e^-4	0.363	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	3207705	X_3207705_SNP [dm3] X_3313672_SNP [dm6]	A	G	1.320e^-4	0.363	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc & 1 other
X	19737738	X_19737738_SNP [dm3] X_19843705_SNP [dm6]	G	T	1.322e^-4	0.363	INTRON pico	TF binding site BDTNP1_TFBS_da
3R	14290050	3R_14290050_SNP [dm3] 3R_18464328_SNP [dm6]	T	C	1.325e^-4	0.363	INTRON fru
2R	4421074	2R_4421074_SNP [dm3] 2R_8533569_SNP [dm6]	G	A	1.325e^-4	0.363	INTERGENIC
2R	12578884	2R_12578884_DEL [dm3] 2R_16691379_DEL [dm6]	AACCA	A	1.327e^-4	0.363	UPSTREAM CG5210 INTRON CG30463 & 1 other
3L	22400416	3L_22400416_INS [dm3] 3L_22407316_INS [dm6]	G	GG	1.328e^-4	0.363	UTR_5_PRIME Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11296850	3R_11296850_SNP [dm3] 3R_15471128_SNP [dm6]	A	T	1.330e^-4	0.363	INTRON AdamTS-A
3R	14146208	3R_14146208_SNP [dm3] 3R_18320486_SNP [dm6]	T	C	1.331e^-4	0.363	INTRON CG31235
2L	5173000	2L_5173000_SNP [dm3] 2L_5173000_SNP [dm6]	C	T	1.331e^-4	0.363	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	1.335e^-4	0.363	INTRON Adk1
3R	5008299	3R_5008299_SNP [dm3] 3R_9182577_SNP [dm6]	C	T	1.337e^-4	0.363	INTRON pum
2R	11913905	2R_11913905_SNP [dm3] 2R_16026400_SNP [dm6]	G	A	1.338e^-4	0.363	SYNONYMOUS_CODING casp
2R	6663630	2R_6663630_INS [dm3] 2R_10776125_INS [dm6]	C	AT	1.344e^-4	0.363	INTRON CG33144
X	5113577	X_5113577_SNP [dm3] X_5219544_SNP [dm6]	A	G	1.345e^-4	0.363	INTRON CG15465 & 1 other
2R	12573381	2R_12573381_SNP [dm3] 2R_16685876_SNP [dm6]	C	A	1.346e^-4	0.363	INTRON CG30463
2L	14183468	2L_14183468_SNP [dm3] 2L_14183468_SNP [dm6]	C	A	1.346e^-4	0.363	INTERGENIC
X	17237067	X_17237067_SNP [dm3] X_17343034_SNP [dm6]	A	G	1.348e^-4	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17745768	X_17745768_SNP [dm3] X_17851735_SNP [dm6]	A	G	1.349e^-4	0.363	SYNONYMOUS_CODING CG6506 DOWNSTREAM CG32554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2812224	3L_2812224_SNP [dm3] 3L_2812224_SNP [dm6]	G	A	1.351e^-4	0.363	INTRON CG43444
3R	18615938	3R_18615938_SNP [dm3] 3R_22790216_SNP [dm6]	G	C	1.355e^-4	0.363	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21836658	X_21836658_SNP [dm3] X_22434823_SNP [dm6]	T	A	1.355e^-4	0.363	INTERGENIC	transposable element FlyBase
3R	24871462	3R_24871462_SNP [dm3] 3R_29045740_SNP [dm6]	G	T	1.356e^-4	0.363	INTRON Pkc98E
2L	14315563	2L_14315563_SNP [dm3] 2L_14315563_SNP [dm6]	T	A	1.358e^-4	0.363	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	20054466	X_20054466_SNP [dm3] X_20160433_SNP [dm6]	G	C	1.358e^-4	0.363	UTR_3_PRIME Phf7 UPSTREAM Rab35 DOWNSTREAM Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3969271	2L_3969271_SNP [dm3] 2L_3969271_SNP [dm6]	G	T	1.359e^-4	0.363	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	25823914	3R_25823914_SNP [dm3] 3R_29998192_SNP [dm6]	C	T	1.359e^-4	0.363	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	937824	2L_937824_SNP [dm3] 2L_937824_SNP [dm6]	G	A	1.360e^-4	0.363	INTRON CG4341
2R	4487462	2R_4487462_SNP [dm3] 2R_8599957_SNP [dm6]	C	G	1.361e^-4	0.363	UTR_5_PRIME CG8735 UPSTREAM rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	17550790	3R_17550790_SNP [dm3] 3R_21725068_SNP [dm6]	A	G	1.364e^-4	0.363	INTERGENIC
3R	24919381	3R_24919381_SNP [dm3] 3R_29093659_SNP [dm6]	G	A	1.365e^-4	0.363	INTRON CG11873
2R	12878031	2R_12878031_SNP [dm3] 2R_16990526_SNP [dm6]	G	A	1.370e^-4	0.363	INTRON Cbp53E
2L	17941414	2L_17941414_DEL [dm3] 2L_17941414_DEL [dm6]	TGCC	T	1.371e^-4	0.363	INTERGENIC	transposable element FlyBase
3L	12425040	3L_12425040_SNP [dm3] 3L_12431940_SNP [dm6]	T	G	1.371e^-4	0.363	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	11913808	2R_11913808_SNP [dm3] 2R_16026303_SNP [dm6]	C	T	1.372e^-4	0.363	INTRON casp
3L	8504752	3L_8504752_SNP [dm3] 3L_8511652_SNP [dm6]	C	T	1.374e^-4	0.363	SYNONYMOUS_CODING CG6745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16231057	2L_16231057_SNP [dm3] 2L_16231057_SNP [dm6]	C	A	1.375e^-4	0.363	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4375448	3R_4375448_INS [dm3] 3R_8549726_INS [dm6]	T	TTAATTGGCT	1.377e^-4	0.363	INTERGENIC
2R	18943356	2R_18943356_SNP [dm3] 2R_23055833_SNP [dm6]	G	C	1.378e^-4	0.363	INTRON CG44252
3L	6570608	3L_6570608_SNP [dm3] 3L_6577508_SNP [dm6]	A	G	1.379e^-4	0.363	INTRON CG18769 & 1 other
3L	8509590	3L_8509590_SNP [dm3] 3L_8516490_SNP [dm6]	A	C	1.381e^-4	0.363	INTRON CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7949212	3L_7949212_SNP [dm3] 3L_7956112_SNP [dm6]	C	T	1.383e^-4	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9395702	3L_9395702_SNP [dm3] 3L_9402602_SNP [dm6]	C	T	1.383e^-4	0.363	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25815033	3R_25815033_SNP [dm3] 3R_29989311_SNP [dm6]	C	T	1.384e^-4	0.363	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4460613	2L_4460613_SNP [dm3] 2L_4460613_SNP [dm6]	G	C	1.384e^-4	0.363	NON_SYNONYMOUS_CODING CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23844008	3R_23844008_SNP [dm3] 3R_28018286_SNP [dm6]	G	A	1.385e^-4	0.363	INTERGENIC
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	1.386e^-4	0.363	INTRON bbg
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	1.389e^-4	0.363	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	5112714	3R_5112714_SNP [dm3] 3R_9286992_SNP [dm6]	G	A	1.394e^-4	0.363	INTERGENIC
2R	12094249	2R_12094249_SNP [dm3] 2R_16206744_SNP [dm6]	C	G	1.395e^-4	0.363	UPSTREAM mrj DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17299365	X_17299365_SNP [dm3] X_17405332_SNP [dm6]	T	A	1.396e^-4	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4910740	2R_4910740_SNP [dm3] 2R_9023235_SNP [dm6]	G	A	1.400e^-4	0.363	NON_SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	11971437	2L_11971437_SNP [dm3] 2L_11971437_SNP [dm6]	G	A	1.401e^-4	0.363	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	1002389	3L_1002389_SNP [dm3] 3L_1002389_SNP [dm6]	A	G	1.402e^-4	0.363	INTRON trio
2L	16231026	2L_16231026_SNP [dm3] 2L_16231026_SNP [dm6]	A	G	1.405e^-4	0.363	UPSTREAM CG42817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4688943	3R_4688943_SNP [dm3] 3R_8863221_SNP [dm6]	T	A	1.406e^-4	0.363	DOWNSTREAM tRNA:R:85Cb INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	9881354	2L_9881354_SNP [dm3] 2L_9881354_SNP [dm6]	C	A	1.408e^-4	0.363	INTRON nAChRalpha6
3R	11003827	3R_11003827_SNP [dm3] 3R_15178105_SNP [dm6]	A	G	1.411e^-4	0.363	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	17466685	3R_17466685_SNP [dm3] 3R_21640963_SNP [dm6]	A	G	1.411e^-4	0.363	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3R	4102826	3R_4102826_SNP [dm3] 3R_8277104_SNP [dm6]	A	G	1.412e^-4	0.363	UPSTREAM ato INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16432305	3R_16432305_SNP [dm3] 3R_20606583_SNP [dm6]	G	A	1.418e^-4	0.363	SYNONYMOUS_CODING bon	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	2461701	2L_2461701_SNP [dm3] 2L_2461701_SNP [dm6]	A	C	1.418e^-4	0.363	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	19966820	3L_19966820_SNP [dm3] 3L_19973720_SNP [dm6]	C	T	1.421e^-4	0.363	SYNONYMOUS_CODING Ac76E
3R	13142093	3R_13142093_SNP [dm3] 3R_17316371_SNP [dm6]	C	A	1.422e^-4	0.363	INTERGENIC
2L	7777338	2L_7777338_SNP [dm3] 2L_7777338_SNP [dm6]	G	T	1.423e^-4	0.363	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1673067	3R_1673067_SNP [dm3] 3R_5847345_SNP [dm6]	C	A	1.424e^-4	0.363	SYNONYMOUS_CODING CG14676 DOWNSTREAM CG1213	TF binding site mE1_TFBS_cad
2R	13236476	2R_13236476_SNP [dm3] 2R_17348971_SNP [dm6]	C	T	1.424e^-4	0.363	INTRON mbl
2L	4911554	2L_4911554_SNP [dm3] 2L_4911554_SNP [dm6]	C	A	1.424e^-4	0.363	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9832124	2L_9832124_SNP [dm3] 2L_9832124_SNP [dm6]	T	G	1.427e^-4	0.364	INTRON nAChRalpha6
X	21835783	X_21835783_SNP [dm3] X_22433948_SNP [dm6]	C	T	1.429e^-4	0.364	INTERGENIC	transposable element FlyBase
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	1.435e^-4	0.365	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18918760	X_18918760_SNP [dm3] X_19024727_SNP [dm6]	A	G	1.443e^-4	0.365	INTRON CG43759
X	18926984	X_18926984_SNP [dm3] X_19032951_SNP [dm6]	C	T	1.443e^-4	0.365	INTERGENIC
X	18927959	X_18927959_SNP [dm3] X_19033926_SNP [dm6]	G	T	1.443e^-4	0.365	INTERGENIC
X	18928543	X_18928543_SNP [dm3] X_19034510_SNP [dm6]	T	C	1.443e^-4	0.365	INTERGENIC
3R	10148919	3R_10148919_SNP [dm3] 3R_14323197_SNP [dm6]	G	C	1.447e^-4	0.365	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19652315	X_19652315_SNP [dm3] X_19758282_SNP [dm6]	A	T	1.449e^-4	0.365	SPLICE_SITE_REGION Pmp70 DOWNSTREAM CG12702 INTRON Pmp70	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3256923	X_3256923_SNP [dm3] X_3362890_SNP [dm6]	T	A	1.450e^-4	0.365	INTERGENIC
X	13985694	X_13985694_SNP [dm3] X_14091661_SNP [dm6]	T	A	1.450e^-4	0.365	INTERGENIC
3L	13753097	3L_13753097_SNP [dm3] 3L_13759997_SNP [dm6]	A	T	1.456e^-4	0.365	INTRON bru-3
3R	14997397	3R_14997397_SNP [dm3] 3R_19171675_SNP [dm6]	G	C	1.458e^-4	0.365	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	1700371	3R_1700371_SNP [dm3] 3R_5874649_SNP [dm6]	C	T	1.458e^-4	0.365	INTRON CG34113
3L	7580045	3L_7580045_SNP [dm3] 3L_7586945_SNP [dm6]	T	C	1.465e^-4	0.366	SYNONYMOUS_CODING CG14838
3R	24900210	3R_24900210_SNP [dm3] 3R_29074488_SNP [dm6]	G	A	1.472e^-4	0.367	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13985793	X_13985793_SNP [dm3] X_14091760_SNP [dm6]	C	T	1.476e^-4	0.367	INTERGENIC
3R	25301056	3R_25301056_SNP [dm3] 3R_29475334_SNP [dm6]	C	T	1.478e^-4	0.367	INTRON Ptp99A
2R	4744086	2R_4744086_SNP [dm3] 2R_8856581_SNP [dm6]	C	T	1.478e^-4	0.367	DOWNSTREAM sns INTERGENIC
2R	4781208	2R_4781208_SNP [dm3] 2R_8893703_SNP [dm6]	G	A	1.478e^-4	0.367	UTR_5_PRIME Sec31 DOWNSTREAM Dmn	TF binding site mE1_TFBS_cad
X	11660312	X_11660312_SNP [dm3] X_11766279_SNP [dm6]	A	C	1.483e^-4	0.367	INTRON m
X	18926335	X_18926335_SNP [dm3] X_19032302_SNP [dm6]	G	A	1.486e^-4	0.367	INTERGENIC
3L	22249756	3L_22249756_SNP [dm3] 3L_22256656_SNP [dm6]	T	C	1.488e^-4	0.367	INTERGENIC
2L	6453105	2L_6453105_SNP [dm3] 2L_6453105_SNP [dm6]	T	C	1.489e^-4	0.367	INTRON retm	TF binding site mE1_TFBS_cad
3R	19028283	3R_19028283_SNP [dm3] 3R_23202561_SNP [dm6]	A	G	1.491e^-4	0.367	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19130983	3R_19130983_SNP [dm3] 3R_23305261_SNP [dm6]	T	G	1.495e^-4	0.367	INTRON pnt
X	18173992	X_18173992_SNP [dm3] X_18279959_SNP [dm6]	G	A	1.495e^-4	0.367	INTRON upd3
3L	2638614	3L_2638614_SNP [dm3] 3L_2638614_SNP [dm6]	G	A	1.500e^-4	0.367	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11086685	2L_11086685_SNP [dm3] 2L_11086685_SNP [dm6]	C	A	1.500e^-4	0.367	UPSTREAM CG16854 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12542204	3R_12542204_SNP [dm3] 3R_16716482_SNP [dm6]	T	G	1.501e^-4	0.367	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18066571	X_18066571_SNP [dm3] X_18172538_SNP [dm6]	T	A	1.503e^-4	0.367	UTR_3_PRIME Frq1
3L	13220292	3L_13220292_SNP [dm3] 3L_13227192_SNP [dm6]	A	T	1.504e^-4	0.367	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	1.505e^-4	0.367	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	1.507e^-4	0.367	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	17551364	3R_17551364_SNP [dm3] 3R_21725642_SNP [dm6]	C	G	1.507e^-4	0.367	INTERGENIC
2R	14357361	2R_14357361_SNP [dm3] 2R_18469856_SNP [dm6]	G	A	1.514e^-4	0.368	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9942728	X_9942728_SNP [dm3] X_10048695_SNP [dm6]	A	C	1.516e^-4	0.368	UPSTREAM CR45185 & 1 other INTRON Cht6
2L	21280615	2L_21280615_SNP [dm3] 2L_21280615_SNP [dm6]	C	T	1.516e^-4	0.368	INTRON CG8671	TF binding site mE1_TFBS_inv
3R	8236210	3R_8236210_SNP [dm3] 3R_12410488_SNP [dm6]	T	C	1.517e^-4	0.368	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16601243	3R_16601243_SNP [dm3] 3R_20775521_SNP [dm6]	G	A	1.522e^-4	0.368	INTRON Syp
3R	11699047	3R_11699047_SNP [dm3] 3R_15873325_SNP [dm6]	A	T	1.523e^-4	0.368	INTRON CG31183
3L	6752671	3L_6752671_SNP [dm3] 3L_6759571_SNP [dm6]	C	T	1.523e^-4	0.368	INTRON CG32392
2R	19356272	2R_19356272_SNP [dm3] 2R_23468749_SNP [dm6]	T	A	1.532e^-4	0.369	INTRON CG43795
3R	21429727	3R_21429727_SNP [dm3] 3R_25604005_SNP [dm6]	T	G	1.535e^-4	0.37	UTR_3_PRIME msi INTRON ymp
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.538e^-4	0.37	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
2L	4400481	2L_4400481_SNP [dm3] 2L_4400481_SNP [dm6]	C	T	1.548e^-4	0.371	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003 DOWNSTREAM l_2_k05819
3R	14675349	3R_14675349_SNP [dm3] 3R_18849627_SNP [dm6]	C	T	1.551e^-4	0.371	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23844022	3R_23844022_SNP [dm3] 3R_28018300_SNP [dm6]	A	T	1.552e^-4	0.371	INTERGENIC
X	11076570	X_11076570_SNP [dm3] X_11182537_SNP [dm6]	T	G	1.553e^-4	0.371	UPSTREAM CG15200 INTERGENIC
X	8336409	X_8336409_SNP [dm3] X_8442376_SNP [dm6]	T	C	1.553e^-4	0.371	UPSTREAM CG12123 INTERGENIC
3R	26471157	3R_26471157_SNP [dm3] 3R_30645435_SNP [dm6]	C	G	1.553e^-4	0.371	NON_SYNONYMOUS_CODING CG31013 DOWNSTREAM PH4alphaPV	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	14609545	2L_14609545_SNP [dm3] 2L_14609545_SNP [dm6]	G	A	1.556e^-4	0.371	INTRON osp
3L	10723070	3L_10723070_SNP [dm3] 3L_10729970_SNP [dm6]	A	G	1.562e^-4	0.372	INTERGENIC
2L	12112476	2L_12112476_SNP [dm3] 2L_12112476_SNP [dm6]	A	C	1.563e^-4	0.372	DOWNSTREAM Phae2 INTERGENIC
3L	2578842	3L_2578842_SNP [dm3] 3L_2578842_SNP [dm6]	A	C	1.566e^-4	0.372	INTRON msn	TF binding site BDTNP1_TFBS_twi
3R	17551382	3R_17551382_SNP [dm3] 3R_21725660_SNP [dm6]	C	T	1.573e^-4	0.373	INTERGENIC
X	8337144	X_8337144_SNP [dm3] X_8443111_SNP [dm6]	T	C	1.575e^-4	0.373	UPSTREAM CG12123 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6752673	3L_6752673_SNP [dm3] 3L_6759573_SNP [dm6]	A	G	1.579e^-4	0.373	INTRON CG32392
2L	2461566	2L_2461566_SNP [dm3] 2L_2461566_SNP [dm6]	C	T	1.579e^-4	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	18290430	X_18290430_SNP [dm3] X_18396397_SNP [dm6]	G	T	1.580e^-4	0.373	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7795018	3L_7795018_SNP [dm3] 3L_7801918_SNP [dm6]	T	A	1.583e^-4	0.373	INTRON CG32369
X	11072212	X_11072212_SNP [dm3] X_11178179_SNP [dm6]	C	A	1.584e^-4	0.373	INTERGENIC
3L	6752674	3L_6752674_SNP [dm3] 3L_6759574_SNP [dm6]	T	A	1.585e^-4	0.373	INTRON CG32392
2L	4621277	2L_4621277_SNP [dm3] 2L_4621277_SNP [dm6]	G	T	1.588e^-4	0.373	DOWNSTREAM CR44609 INTERGENIC
3R	1697105	3R_1697105_SNP [dm3] 3R_5871383_SNP [dm6]	G	A	1.593e^-4	0.373	INTRON CG34113
3R	10150587	3R_10150587_SNP [dm3] 3R_14324865_SNP [dm6]	T	A	1.597e^-4	0.373	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3R	10218968	3R_10218968_SNP [dm3] 3R_14393246_SNP [dm6]	G	A	1.597e^-4	0.373	SYNONYMOUS_CODING cv-c
2R	4414999	2R_4414999_SNP [dm3] 2R_8527494_SNP [dm6]	T	A	1.598e^-4	0.373	INTRON mtt
3R	13802374	3R_13802374_SNP [dm3] 3R_17976652_SNP [dm6]	A	G	1.600e^-4	0.373	INTRON cpo
2L	6453102	2L_6453102_SNP [dm3] 2L_6453102_SNP [dm6]	G	A	1.601e^-4	0.373	INTRON retm	TF binding site mE1_TFBS_cad
3R	9500679	3R_9500679_SNP [dm3] 3R_13674957_SNP [dm6]	G	A	1.606e^-4	0.373	UPSTREAM Task6 DOWNSTREAM CG9588 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sbb mE1_TFBS_Trl
3L	10842600	3L_10842600_SNP [dm3] 3L_10849500_SNP [dm6]	A	G	1.608e^-4	0.373	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17944182	2L_17944182_SNP [dm3] 2L_17944182_SNP [dm6]	C	G	1.608e^-4	0.373	INTERGENIC
2L	14231647	2L_14231647_SNP [dm3] 2L_14231647_SNP [dm6]	T	C	1.610e^-4	0.373	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
3R	1704414	3R_1704414_SNP [dm3] 3R_5878692_SNP [dm6]	G	A	1.616e^-4	0.374	SPLICE_SITE_REGION CG34113 INTRON CG34113
3R	24893367	3R_24893367_SNP [dm3] 3R_29067645_SNP [dm6]	T	C	1.617e^-4	0.374	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9773883	3R_9773883_SNP [dm3] 3R_13948161_SNP [dm6]	C	G	1.624e^-4	0.375	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19552806	2R_19552806_SNP [dm3] 2R_23665283_SNP [dm6]	C	G	1.629e^-4	0.375	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	12027823	2R_12027823_SNP [dm3] 2R_16140318_SNP [dm6]	G	C	1.632e^-4	0.375	INTRON Got1
3R	17985240	3R_17985240_SNP [dm3] 3R_22159518_SNP [dm6]	T	A	1.637e^-4	0.375	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	19251220	2R_19251220_SNP [dm3] 2R_23363697_SNP [dm6]	G	T	1.638e^-4	0.375	NON_SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1979578	2L_1979578_SNP [dm3] 2L_1979578_SNP [dm6]	G	A	1.640e^-4	0.375	INTRON CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	18177345	X_18177345_SNP [dm3] X_18283312_SNP [dm6]	G	C	1.640e^-4	0.375	INTRON upd3	TF binding site BDTNP1_TFBS_dl
X	15133812	X_15133812_SNP [dm3] X_15239779_SNP [dm6]	G	T	1.641e^-4	0.375	INTERGENIC
3R	20359685	3R_20359685_SNP [dm3] 3R_24533963_SNP [dm6]	A	C	1.649e^-4	0.375	NON_SYNONYMOUS_CODING ana1
2L	13503288	2L_13503288_DEL [dm3] 2L_13503288_DEL [dm6]	TAT	T	1.650e^-4	0.375	UTR_3_PRIME B4
3R	17545546	3R_17545546_SNP [dm3] 3R_21719824_SNP [dm6]	G	A	1.652e^-4	0.375	UPSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	16033985	X_16033985_SNP [dm3] X_16139952_SNP [dm6]	G	T	1.656e^-4	0.375	INTRON disco-r	TF binding site mE1_TFBS_HSA
X	8336429	X_8336429_SNP [dm3] X_8442396_SNP [dm6]	G	A	1.659e^-4	0.375	UPSTREAM CG12123 INTERGENIC
X	18737134	X_18737134_SNP [dm3] X_18843101_SNP [dm6]	T	A	1.660e^-4	0.375	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3L	13220152	3L_13220152_INS [dm3] 3L_13227052_INS [dm6]	A	AA	1.662e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	14295743	2L_14295743_SNP [dm3] 2L_14295743_SNP [dm6]	T	C	1.662e^-4	0.375	UPSTREAM CR43640 INTRON wb
3R	13242522	3R_13242522_SNP [dm3] 3R_17416800_SNP [dm6]	T	A	1.663e^-4	0.375	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
2R	12108123	2R_12108123_DEL [dm3] 2R_16220618_DEL [dm6]	TT	T	1.665e^-4	0.375	DOWNSTREAM tRNA:CR30239 & 1 other INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	1.667e^-4	0.375	INTRON CG12207
3L	14400851	3L_14400851_SNP [dm3] 3L_14407751_SNP [dm6]	G	C	1.667e^-4	0.375	INTRON stwl	TF binding site BDTNP1_TFBS_dl
3L	22208194	3L_22208194_SNP [dm3] 3L_22215094_SNP [dm6]	T	G	1.668e^-4	0.375	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1002042	3L_1002042_SNP [dm3] 3L_1002042_SNP [dm6]	C	A	1.669e^-4	0.375	INTRON trio
3R	17551415	3R_17551415_SNP [dm3] 3R_21725693_SNP [dm6]	C	G	1.672e^-4	0.375	INTERGENIC
3R	5147764	3R_5147764_SNP [dm3] 3R_9322042_SNP [dm6]	A	T	1.673e^-4	0.375	NON_SYNONYMOUS_CODING HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20715555	3R_20715555_SNP [dm3] 3R_24889833_SNP [dm6]	T	C	1.673e^-4	0.375	INTRON CG31121
2L	4911560	2L_4911560_SNP [dm3] 2L_4911560_SNP [dm6]	C	T	1.676e^-4	0.376	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8336587	X_8336587_SNP [dm3] X_8442554_SNP [dm6]	T	A	1.680e^-4	0.376	UPSTREAM CG12123 INTERGENIC
3R	19258832	3R_19258832_DEL [dm3] 3R_23433110_DEL [dm6]	TT	T	1.680e^-4	0.376	INTRON CG4374
2L	1735682	2L_1735682_DEL [dm3] 2L_1735682_DEL [dm6]	GGTACCT	C	1.683e^-4	0.376	INTRON CG17646
3R	5005637	3R_5005637_SNP [dm3] 3R_9179915_SNP [dm6]	G	A	1.688e^-4	0.377	DOWNSTREAM CG11997 INTRON pum
2R	18737622	2R_18737622_SNP [dm3] 2R_22850099_SNP [dm6]	C	T	1.691e^-4	0.377	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
3R	6727178	3R_6727178_SNP [dm3] 3R_10901456_SNP [dm6]	C	T	1.694e^-4	0.377	INTERGENIC
3L	7239862	3L_7239862_SNP [dm3] 3L_7246762_SNP [dm6]	A	G	1.696e^-4	0.377	SYNONYMOUS_CODING Cdc27	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19799067	2L_19799067_SNP [dm3] 2L_19799067_SNP [dm6]	A	G	1.700e^-4	0.377	INTRON sick
X	18177362	X_18177362_SNP [dm3] X_18283329_SNP [dm6]	A	G	1.703e^-4	0.378	INTRON upd3
2R	16203933	2R_16203933_SNP [dm3] 2R_20316428_SNP [dm6]	A	G	1.705e^-4	0.378	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
3L	1079337	3L_1079337_SNP [dm3] 3L_1079337_SNP [dm6]	A	C	1.708e^-4	0.378	INTRON bab1
2R	4081939	2R_4081939_SNP [dm3] 2R_8194434_SNP [dm6]	A	G	1.709e^-4	0.378	INTRON LRP1
3R	11993965	3R_11993965_SNP [dm3] 3R_16168243_SNP [dm6]	C	A	1.723e^-4	0.38	DOWNSTREAM CR43472 INTRON CG6006	TF binding site BDTNP1_TFBS_twi
3L	10693336	3L_10693336_MNP [dm3] 3L_10700236_MNP [dm6]	GTTT	ACCA	1.723e^-4	0.38	INTERGENIC
2R	12578903	2R_12578903_SNP [dm3] 2R_16691398_SNP [dm6]	G	C	1.724e^-4	0.38	UPSTREAM CG5210 INTRON CG30463 & 1 other
3R	19497711	3R_19497711_SNP [dm3] 3R_23671989_SNP [dm6]	T	A	1.729e^-4	0.38	INTERGENIC
3L	12290610	3L_12290610_SNP [dm3] 3L_12297510_SNP [dm6]	A	C	1.729e^-4	0.38	INTERGENIC
2R	7030660	2R_7030660_SNP [dm3] 2R_11143155_SNP [dm6]	A	C	1.731e^-4	0.38	INTRON CG13229
3R	14290044	3R_14290044_SNP [dm3] 3R_18464322_SNP [dm6]	A	T	1.734e^-4	0.38	INTRON fru
2R	7030659	2R_7030659_SNP [dm3] 2R_11143154_SNP [dm6]	T	A	1.740e^-4	0.38	INTRON CG13229
2L	3969109	2L_3969109_SNP [dm3] 2L_3969109_SNP [dm6]	G	A	1.742e^-4	0.38	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	20514913	3R_20514913_SNP [dm3] 3R_24689191_SNP [dm6]	T	C	1.745e^-4	0.38	INTRON slo
X	16834618	X_16834618_SNP [dm3] X_16940585_SNP [dm6]	G	A	1.746e^-4	0.38	UTR_5_PRIME wus DOWNSTREAM CG13001
3R	17551362	3R_17551362_SNP [dm3] 3R_21725640_SNP [dm6]	G	A	1.747e^-4	0.38	INTERGENIC
3R	17551365	3R_17551365_SNP [dm3] 3R_21725643_SNP [dm6]	T	G	1.747e^-4	0.38	INTERGENIC
2R	17424076	2R_17424076_SNP [dm3] 2R_21536571_SNP [dm6]	G	T	1.747e^-4	0.38	DOWNSTREAM CG30287 INTRON Egfr & 1 other	TF binding site mE1_TFBS_sens
2L	6035179	2L_6035179_SNP [dm3] 2L_6035179_SNP [dm6]	C	A	1.750e^-4	0.38	SYNONYMOUS_CODING mtm UPSTREAM CG9109	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18158174	3L_18158174_SNP [dm3] 3L_18165074_SNP [dm6]	A	C	1.752e^-4	0.38	INTERGENIC
2R	9232254	2R_9232254_INS [dm3] 2R_13344749_INS [dm6]	C	CTAGC	1.754e^-4	0.38	INTRON CR44206
3L	11565988	3L_11565988_SNP [dm3] 3L_11572888_SNP [dm6]	T	C	1.760e^-4	0.38	SYNONYMOUS_STOP CG33490 DOWNSTREAM CG33267
2R	18932255	2R_18932255_SNP [dm3] 2R_23044732_SNP [dm6]	C	A	1.762e^-4	0.38	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	19299394	X_19299394_SNP [dm3] X_19405361_SNP [dm6]	T	A	1.764e^-4	0.38	INTRON kek5
3R	8279286	3R_8279286_SNP [dm3] 3R_12453564_SNP [dm6]	T	C	1.767e^-4	0.38	DOWNSTREAM CG5509 INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	8337099	X_8337099_SNP [dm3] X_8443066_SNP [dm6]	T	C	1.769e^-4	0.38	UPSTREAM CG12123 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9614355	3R_9614355_SNP [dm3] 3R_13788633_SNP [dm6]	G	A	1.769e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16416524	X_16416524_SNP [dm3] X_16522491_SNP [dm6]	A	C	1.774e^-4	0.38	DOWNSTREAM Cnx14D INTRON para
X	18177163	X_18177163_DEL [dm3] X_18283130_DEL [dm6]	TGGGGTAACT	G	1.774e^-4	0.38	INTRON upd3	TF binding site BDTNP1_TFBS_dl
2L	2461538	2L_2461538_SNP [dm3] 2L_2461538_SNP [dm6]	A	T	1.776e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	15098902	2L_15098902_SNP [dm3] 2L_15098902_SNP [dm6]	T	C	1.779e^-4	0.38	INTERGENIC
2L	14231481	2L_14231481_SNP [dm3] 2L_14231481_SNP [dm6]	T	C	1.780e^-4	0.38	INTRON Dyrk2
2L	8893686	2L_8893686_SNP [dm3] 2L_8893686_SNP [dm6]	G	A	1.781e^-4	0.38	INTERGENIC
X	17271056	X_17271056_SNP [dm3] X_17377023_SNP [dm6]	A	T	1.782e^-4	0.38	INTERGENIC
2R	12578905	2R_12578905_SNP [dm3] 2R_16691400_SNP [dm6]	G	T	1.785e^-4	0.38	UPSTREAM CG5210 INTRON CG30463 & 1 other
2R	12638961	2R_12638961_SNP [dm3] 2R_16751456_SNP [dm6]	T	A	1.790e^-4	0.38	UTR_5_PRIME Acp53C14c DOWNSTREAM unc-104
2R	16381548	2R_16381548_SNP [dm3] 2R_20494043_SNP [dm6]	C	T	1.790e^-4	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18063407	X_18063407_INS [dm3] X_18169374_INS [dm6]	G	GCGTG	1.792e^-4	0.38	INTRON Frq1
X	8336650	X_8336650_SNP [dm3] X_8442617_SNP [dm6]	C	A	1.793e^-4	0.38	UPSTREAM CG12123 INTERGENIC
3L	8490732	3L_8490732_SNP [dm3] 3L_8497632_SNP [dm6]	C	A	1.798e^-4	0.381	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16834610	X_16834610_SNP [dm3] X_16940577_SNP [dm6]	A	G	1.801e^-4	0.381	UTR_5_PRIME wus DOWNSTREAM CG13001
2R	16558666	2R_16558666_SNP [dm3] 2R_20671161_SNP [dm6]	A	G	1.802e^-4	0.381	START_GAINED CG30152 UTR_5_PRIME CG30152 UPSTREAM CG30152 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	7023486	3L_7023486_SNP [dm3] 3L_7030386_SNP [dm6]	C	T	1.803e^-4	0.381	INTRON Mp
X	19649315	X_19649315_SNP [dm3] X_19755282_SNP [dm6]	G	T	1.807e^-4	0.381	START_GAINED Pmp70 UTR_5_PRIME Pmp70 INTRON Pmp70
2R	17976120	2R_17976120_SNP [dm3] 2R_22088615_SNP [dm6]	T	A	1.807e^-4	0.381	UTR_5_PRIME CG13502 DOWNSTREAM CG43393
3R	4250469	3R_4250469_SNP [dm3] 3R_8424747_SNP [dm6]	C	A	1.808e^-4	0.381	INTRON CG45263
2R	18212137	2R_18212137_SNP [dm3] 2R_22324632_SNP [dm6]	A	G	1.812e^-4	0.381	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7591556	3L_7591556_SNP [dm3] 3L_7598456_SNP [dm6]	A	G	1.814e^-4	0.381	INTRON CG33275
X	17367131	X_17367131_SNP [dm3] X_17473098_SNP [dm6]	T	A	1.817e^-4	0.381	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	12342605	2R_12342605_SNP [dm3] 2R_16455100_SNP [dm6]	A	G	1.820e^-4	0.381	INTERGENIC
3R	4999253	3R_4999253_DEL [dm3] 3R_9173531_DEL [dm6]	GA	G	1.822e^-4	0.381	INTRON pum
2R	8350838	2R_8350838_SNP [dm3] 2R_12463333_SNP [dm6]	A	G	1.825e^-4	0.381	INTRON Lac	TF binding site BDTNP1_TFBS_dl
3R	9750480	3R_9750480_SNP [dm3] 3R_13924758_SNP [dm6]	G	C	1.827e^-4	0.381	INTERGENIC
2L	6453106	2L_6453106_SNP [dm3] 2L_6453106_SNP [dm6]	A	T	1.828e^-4	0.381	INTRON retm	TF binding site mE1_TFBS_cad
3R	9743995	3R_9743995_SNP [dm3] 3R_13918273_SNP [dm6]	C	A	1.828e^-4	0.381	INTERGENIC
X	18934688	X_18934688_SNP [dm3] X_19040655_SNP [dm6]	A	G	1.828e^-4	0.381	INTERGENIC
2R	16462743	2R_16462743_SNP [dm3] 2R_20575238_SNP [dm6]	T	A	1.834e^-4	0.381	INTRON qsm
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	1.835e^-4	0.381	INTERGENIC
2R	2685713	2R_2685713_SNP [dm3] 2R_6798208_SNP [dm6]	C	A	1.839e^-4	0.381	INTRON Epac
3L	10491483	3L_10491483_SNP [dm3] 3L_10498383_SNP [dm6]	G	A	1.840e^-4	0.381	INTRON A2bp1
3R	1387313	3R_1387313_SNP [dm3] 3R_5561591_SNP [dm6]	C	T	1.841e^-4	0.381	UPSTREAM Pi4KIIalpha INTRON Pi4KIIalpha
2R	12578895	2R_12578895_DEL [dm3] 2R_16691390_DEL [dm6]	TTCAAG	T	1.844e^-4	0.381	UPSTREAM CG5210 INTRON CG30463 & 1 other
2R	20366332	2R_20366332_SNP [dm3] 2R_24478809_SNP [dm6]	C	A	1.845e^-4	0.381	INTRON CG13579
X	17271053	X_17271053_SNP [dm3] X_17377020_SNP [dm6]	T	C	1.848e^-4	0.381	INTERGENIC
3R	13334022	3R_13334022_SNP [dm3] 3R_17508300_SNP [dm6]	G	T	1.850e^-4	0.381	INTERGENIC
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	1.852e^-4	0.381	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3858336	X_3858336_SNP [dm3] X_3964303_SNP [dm6]	T	C	1.867e^-4	0.384	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6663654	2R_6663654_SNP [dm3] 2R_10776149_SNP [dm6]	A	T	1.873e^-4	0.385	INTRON CG33144
2R	14369580	2R_14369580_SNP [dm3] 2R_18482075_SNP [dm6]	C	A	1.877e^-4	0.385	INTRON CG30116
3R	13199872	3R_13199872_SNP [dm3] 3R_17374150_SNP [dm6]	C	G	1.878e^-4	0.385	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18063648	X_18063648_SNP [dm3] X_18169615_SNP [dm6]	A	C	1.881e^-4	0.385	INTRON Frq1
3L	8508355	3L_8508355_SNP [dm3] 3L_8515255_SNP [dm6]	T	A	1.882e^-4	0.385	UPSTREAM CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
X	15133815	X_15133815_SNP [dm3] X_15239782_SNP [dm6]	T	A	1.892e^-4	0.387	INTERGENIC
3R	17551293	3R_17551293_SNP [dm3] 3R_21725571_SNP [dm6]	C	T	1.900e^-4	0.388	INTERGENIC
3L	13750970	3L_13750970_SNP [dm3] 3L_13757870_SNP [dm6]	C	A	1.901e^-4	0.388	INTRON bru-3
2L	10175274	2L_10175274_SNP [dm3] 2L_10175274_SNP [dm6]	C	A	1.906e^-4	0.388	INTRON CG44153
2R	12578906	2R_12578906_DEL [dm3] 2R_16691401_DEL [dm6]	TGAA	T	1.910e^-4	0.388	UPSTREAM CG5210 INTRON CG30463 & 1 other
2L	7306715	2L_7306715_SNP [dm3] 2L_7306715_SNP [dm6]	G	T	1.917e^-4	0.39	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2L	4617180	2L_4617180_SNP [dm3] 2L_4617180_SNP [dm6]	T	G	1.920e^-4	0.39	INTERGENIC
2L	1285644	2L_1285644_SNP [dm3] 2L_1285644_SNP [dm6]	T	A	1.922e^-4	0.39	SPLICE_SITE_REGION robo3 INTRON robo3
3R	4709134	3R_4709134_SNP [dm3] 3R_8883412_SNP [dm6]	A	G	1.924e^-4	0.39	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6663620	2R_6663620_SNP [dm3] 2R_10776115_SNP [dm6]	T	C	1.926e^-4	0.39	INTRON CG33144
X	18914820	X_18914820_SNP [dm3] X_19020787_SNP [dm6]	G	A	1.930e^-4	0.39	INTRON CG43759
3R	10112636	3R_10112636_SNP [dm3] 3R_14286914_SNP [dm6]	A	C	1.933e^-4	0.39	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14609719	2L_14609719_SNP [dm3] 2L_14609719_SNP [dm6]	T	C	1.941e^-4	0.391	INTRON osp
3R	10112678	3R_10112678_SNP [dm3] 3R_14286956_SNP [dm6]	C	T	1.942e^-4	0.391	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18174538	X_18174538_SNP [dm3] X_18280505_SNP [dm6]	A	C	1.942e^-4	0.391	INTRON upd3	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	3795696	3L_3795696_SNP [dm3] 3L_3795696_SNP [dm6]	C	T	1.945e^-4	0.391	UPSTREAM CG32264 INTRON CG32264
3R	11123604	3R_11123604_SNP [dm3] 3R_15297882_SNP [dm6]	A	G	1.947e^-4	0.391	DOWNSTREAM Tm1 INTRON Tm1
2L	15184546	2L_15184546_SNP [dm3] 2L_15184546_SNP [dm6]	A	C	1.955e^-4	0.392	INTRON CG4168
3L	18559918	3L_18559918_SNP [dm3] 3L_18566818_SNP [dm6]	G	A	1.958e^-4	0.392	INTRON AstC-R1
2L	16865051	2L_16865051_SNP [dm3] 2L_16865051_SNP [dm6]	G	A	1.958e^-4	0.392	INTERGENIC
2R	16203938	2R_16203938_SNP [dm3] 2R_20316433_SNP [dm6]	A	G	1.963e^-4	0.392	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
3R	26657478	3R_26657478_SNP [dm3] 3R_30831756_SNP [dm6]	A	G	1.967e^-4	0.392	INTRON CG15544
2L	12566386	2L_12566386_SNP [dm3] 2L_12566386_SNP [dm6]	T	G	1.967e^-4	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5884367	3L_5884367_SNP [dm3] 3L_5891267_SNP [dm6]	T	C	1.967e^-4	0.392	INTERGENIC
2R	16058180	2R_16058180_SNP [dm3] 2R_20170675_SNP [dm6]	C	T	1.968e^-4	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5897191	3L_5897191_SNP [dm3] 3L_5904091_SNP [dm6]	G	A	1.968e^-4	0.392	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
2R	779517	2R_779517_SNP [dm3] 2R_4892012_SNP [dm6]	A	G	1.977e^-4	0.393	INTERGENIC	transposable element FlyBase
3R	4148056	3R_4148056_SNP [dm3] 3R_8322334_SNP [dm6]	T	A	1.980e^-4	0.393	SYNONYMOUS_CODING Or85a INTRON Poxm	TF binding site mE1_TFBS_sens
3L	14818246	3L_14818246_SNP [dm3] 3L_14825146_SNP [dm6]	A	T	1.981e^-4	0.393	INTRON CG17839
2L	4207719	2L_4207719_SNP [dm3] 2L_4207719_SNP [dm6]	G	A	1.983e^-4	0.393	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17236793	X_17236793_SNP [dm3] X_17342760_SNP [dm6]	A	G	1.989e^-4	0.393	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14389436	3R_14389436_SNP [dm3] 3R_18563714_SNP [dm6]	A	C	1.994e^-4	0.393	DOWNSTREAM CG43210 & 1 other INTERGENIC
X	18408084	X_18408084_SNP [dm3] X_18514051_SNP [dm6]	T	G	1.995e^-4	0.393	INTRON CG6470	TF binding site mE1_TFBS_HSA
X	17236741	X_17236741_SNP [dm3] X_17342708_SNP [dm6]	A	T	1.997e^-4	0.393	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15672960	X_15672960_SNP [dm3] X_15778927_SNP [dm6]	A	G	1.998e^-4	0.393	UPSTREAM CG43673 DOWNSTREAM CG43672 INTERGENIC
X	19547199	X_19547199_SNP [dm3] X_19653166_SNP [dm6]	C	A	1.999e^-4	0.393	NON_SYNONYMOUS_CODING CG14215 UPSTREAM Ranbp21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19573887	X_19573887_SNP [dm3] X_19679854_SNP [dm6]	C	T	1.999e^-4	0.393	INTRON dome
2R	9148966	2R_9148966_SNP [dm3] 2R_13261461_SNP [dm6]	G	A	2.002e^-4	0.393	INTRON CG42319
2L	5180655	2L_5180655_SNP [dm3] 2L_5180655_SNP [dm6]	C	T	2.004e^-4	0.393	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
X	19488404	X_19488404_SNP [dm3] X_19594371_SNP [dm6]	G	A	2.006e^-4	0.393	NON_SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19488409	X_19488409_SNP [dm3] X_19594376_SNP [dm6]	C	T	2.006e^-4	0.393	SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14844900	2L_14844900_SNP [dm3] 2L_14844900_SNP [dm6]	C	A	2.007e^-4	0.393	DOWNSTREAM CG15279 INTERGENIC
3R	19204407	3R_19204407_SNP [dm3] 3R_23378685_SNP [dm6]	C	T	2.009e^-4	0.393	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
2L	7684261	2L_7684261_SNP [dm3] 2L_7684261_SNP [dm6]	A	G	2.014e^-4	0.393	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3R	21853371	3R_21853371_SNP [dm3] 3R_26027649_SNP [dm6]	T	A	2.026e^-4	0.395	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	10241126	2L_10241126_SNP [dm3] 2L_10241126_SNP [dm6]	C	T	2.030e^-4	0.395	SPLICE_SITE_REGION me31B INTRON me31B	TF binding site mE1_TFBS_sens
3L	10693321	3L_10693321_DEL [dm3] 3L_10700221_DEL [dm6]	AAT	A	2.032e^-4	0.395	INTERGENIC
3R	6114716	3R_6114716_SNP [dm3] 3R_10288994_SNP [dm6]	G	T	2.034e^-4	0.395	INTRON CG43143	TF binding site mE1_TFBS_inv
X	18061412	X_18061412_SNP [dm3] X_18167379_SNP [dm6]	C	T	2.037e^-4	0.395	INTRON Frq1
2L	8662796	2L_8662796_SNP [dm3] 2L_8662796_SNP [dm6]	T	A	2.038e^-4	0.395	INTRON Sema-1a
2L	14450966	2L_14450966_DEL [dm3] 2L_14450966_DEL [dm6]	TA	T	2.039e^-4	0.395	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2L	10658910	2L_10658910_SNP [dm3] 2L_10658910_SNP [dm6]	T	C	2.041e^-4	0.395	DOWNSTREAM CR45692 & 1 other INTERGENIC
X	18917459	X_18917459_SNP [dm3] X_19023426_SNP [dm6]	A	C	2.041e^-4	0.395	INTRON CG43759
3L	22131392	3L_22131392_SNP [dm3] 3L_22138292_SNP [dm6]	C	T	2.046e^-4	0.395	INTRON olf413
2R	12578891	2R_12578891_MNP [dm3] 2R_16691386_MNP [dm6]	TAA	ATC	2.047e^-4	0.395	UPSTREAM CG5210 INTRON CG30463 & 1 other
X	8337147	X_8337147_SNP [dm3] X_8443114_SNP [dm6]	A	G	2.047e^-4	0.395	UPSTREAM CG12123 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21837442	X_21837442_SNP [dm3] X_22435607_SNP [dm6]	G	A	2.049e^-4	0.395	INTERGENIC	transposable element FlyBase
2L	3969214	2L_3969214_SNP [dm3] 2L_3969214_SNP [dm6]	G	T	2.054e^-4	0.395	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6943178	2R_6943178_SNP [dm3] 2R_11055673_SNP [dm6]	C	T	2.059e^-4	0.396	INTRON luna
3R	10568076	3R_10568076_SNP [dm3] 3R_14742354_SNP [dm6]	A	G	2.082e^-4	0.4	SYNONYMOUS_CODING jvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3R	26098390	3R_26098390_SNP [dm3] 3R_30272668_SNP [dm6]	C	T	2.083e^-4	0.4	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11551653	3L_11551653_SNP [dm3] 3L_11558553_SNP [dm6]	G	T	2.089e^-4	0.4	SYNONYMOUS_CODING Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19488406	X_19488406_SNP [dm3] X_19594373_SNP [dm6]	C	T	2.091e^-4	0.4	SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18466696	3L_18466696_SNP [dm3] 3L_18473596_SNP [dm6]	T	C	2.093e^-4	0.4	INTERGENIC
3R	13783764	3R_13783764_SNP [dm3] 3R_17958042_SNP [dm6]	G	A	2.094e^-4	0.4	INTRON cpo
2L	14609693	2L_14609693_SNP [dm3] 2L_14609693_SNP [dm6]	G	C	2.095e^-4	0.4	INTRON osp
2R	19344064	2R_19344064_SNP [dm3] 2R_23456541_SNP [dm6]	G	A	2.103e^-4	0.401	NON_SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo
3R	14146219	3R_14146219_SNP [dm3] 3R_18320497_SNP [dm6]	C	T	2.105e^-4	0.401	INTRON CG31235
3R	15961436	3R_15961436_SNP [dm3] 3R_20135714_SNP [dm6]	T	C	2.109e^-4	0.401	INTERGENIC
3R	14041503	3R_14041503_SNP [dm3] 3R_18215781_SNP [dm6]	T	C	2.115e^-4	0.401	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1079442	3L_1079442_INS [dm3] 3L_1079442_INS [dm6]	T	TT	2.118e^-4	0.401	INTRON bab1
2L	543598	2L_543598_SNP [dm3] 2L_543598_SNP [dm6]	C	T	2.121e^-4	0.401	SYNONYMOUS_CODING Spp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10842886	3L_10842886_DEL [dm3] 3L_10849786_DEL [dm6]	AA	A	2.123e^-4	0.401	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15170962	3L_15170962_SNP [dm3] 3L_15177862_SNP [dm6]	A	T	2.123e^-4	0.401	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5254972	2R_5254972_SNP [dm3] 2R_9367467_SNP [dm6]	A	C	2.123e^-4	0.401	INTRON CG13954
3R	14147781	3R_14147781_SNP [dm3] 3R_18322059_SNP [dm6]	C	T	2.124e^-4	0.401	INTRON CG31235
2R	18327046	2R_18327046_SNP [dm3] 2R_22439541_SNP [dm6]	C	T	2.127e^-4	0.401	INTERGENIC
3L	10723057	3L_10723057_SNP [dm3] 3L_10729957_SNP [dm6]	G	A	2.135e^-4	0.402	INTERGENIC
X	17236790	X_17236790_SNP [dm3] X_17342757_SNP [dm6]	G	T	2.135e^-4	0.402	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18368273	3L_18368273_SNP [dm3] 3L_18375173_SNP [dm6]	G	T	2.137e^-4	0.402	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14426431	2R_14426431_SNP [dm3] 2R_18538926_SNP [dm6]	G	T	2.140e^-4	0.402	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087 UPSTREAM Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4614622	3L_4614622_SNP [dm3] 3L_4614622_SNP [dm6]	A	T	2.143e^-4	0.402	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	5701444	3L_5701444_SNP [dm3] 3L_5708344_SNP [dm6]	C	G	2.143e^-4	0.402	INTRON sif

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.635e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03411
In_3R_K	0.08429

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.5025	0.0142
In_3R_K	5.6946	0.058

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2742 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	3101910	2L_3101910_SNP [dm3] 2L_3101910_SNP [dm6]	T	C	3.027e^-7	0.461	INTRON toc
3L	12630024	3L_12630024_INS [dm3] 3L_12636924_INS [dm6]	T	TT	7.428e^-7	0.461	INTRON CR32111
2L	14283269	2L_14283269_SNP [dm3] 2L_14283269_SNP [dm6]	C	T	8.985e^-7	0.461	INTRON wb	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA
3L	12630140	3L_12630140_INS [dm3] 3L_12637040_INS [dm6]	T	TTAGAT	1.049e^-6	0.461	INTRON CR32111
3L	12630109	3L_12630109_SNP [dm3] 3L_12637009_SNP [dm6]	C	T	1.504e^-6	0.461	INTRON CR32111
X	4117063	X_4117063_SNP [dm3] X_4223030_SNP [dm6]	T	C	1.875e^-6	0.461	SYNONYMOUS_CODING CG15570
2L	1964592	2L_1964592_SNP [dm3] 2L_1964592_SNP [dm6]	A	C	2.295e^-6	0.461	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs
3L	12630168	3L_12630168_SNP [dm3] 3L_12637068_SNP [dm6]	C	T	2.432e^-6	0.461	INTRON CR32111
3L	12630112	3L_12630112_SNP [dm3] 3L_12637012_SNP [dm6]	T	G	2.736e^-6	0.461	INTRON CR32111
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	3.642e^-6	0.461	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15475221	2R_15475221_SNP [dm3] 2R_19587716_SNP [dm6]	C	G	3.674e^-6	0.461	UTR_3_PRIME CG42878 INTRON sm
2L	12726794	2L_12726794_SNP [dm3] 2L_12726794_SNP [dm6]	C	T	3.780e^-6	0.461	SYNONYMOUS_CODING MRP
3R	25061331	3R_25061331_SNP [dm3] 3R_29235609_SNP [dm6]	G	A	3.910e^-6	0.461	DOWNSTREAM CG15817 INTRON CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11637450	2R_11637450_SNP [dm3] 2R_15749945_SNP [dm6]	C	A	3.998e^-6	0.461	INTRON CG30089
3R	10378520	3R_10378520_SNP [dm3] 3R_14552798_SNP [dm6]	T	C	4.216e^-6	0.461	INTRON Pde6
3R	24514206	3R_24514206_SNP [dm3] 3R_28688484_SNP [dm6]	G	T	4.243e^-6	0.461	INTRON CG9990
2L	8341464	2L_8341464_SNP [dm3] 2L_8341464_SNP [dm6]	T	C	4.663e^-6	0.461	UTR_3_PRIME CG14274
2L	494184	2L_494184_SNP [dm3] 2L_494184_SNP [dm6]	T	C	4.739e^-6	0.461	INTRON ush
2R	15475109	2R_15475109_SNP [dm3] 2R_19587604_SNP [dm6]	A	T	4.964e^-6	0.461	SYNONYMOUS_CODING CG42878 INTRON sm
2R	15475210	2R_15475210_SNP [dm3] 2R_19587705_SNP [dm6]	G	A	5.112e^-6	0.461	UTR_3_PRIME CG42878 INTRON sm
3R	15582957	3R_15582957_SNP [dm3] 3R_19757235_SNP [dm6]	G	A	5.388e^-6	0.461	INTRON GluClalpha
3R	24893367	3R_24893367_SNP [dm3] 3R_29067645_SNP [dm6]	T	C	5.405e^-6	0.461	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24514248	3R_24514248_SNP [dm3] 3R_28688526_SNP [dm6]	T	G	6.195e^-6	0.469	INTRON CG9990
3R	24893734	3R_24893734_SNP [dm3] 3R_29068012_SNP [dm6]	A	T	6.209e^-6	0.469	INTRON CG11873	TF binding site BDTNP1_TFBS_dl
3L	10377578	3L_10377578_SNP [dm3] 3L_10384478_SNP [dm6]	A	C	6.250e^-6	0.469	INTERGENIC
3R	8271680	3R_8271680_SNP [dm3] 3R_12445958_SNP [dm6]	A	G	7.532e^-6	0.502	INTRON Desat1
3L	21397522	3L_21397522_SNP [dm3] 3L_21404422_SNP [dm6]	C	T	8.042e^-6	0.502	INTRON rgn
2L	9169493	2L_9169493_SNP [dm3] 2L_9169493_SNP [dm6]	G	A	8.285e^-6	0.502	INTRON tai
2L	16470343	2L_16470343_DEL [dm3] 2L_16470343_DEL [dm6]	GG	G	8.374e^-6	0.502	INTRON dac	regulatory region REDfly_CRMs
2L	14278086	2L_14278086_SNP [dm3] 2L_14278086_SNP [dm6]	C	T	8.485e^-6	0.502	DOWNSTREAM CG32971 INTRON wb
2L	8341490	2L_8341490_SNP [dm3] 2L_8341490_SNP [dm6]	A	T	8.688e^-6	0.502	UTR_3_PRIME CG14274
2L	7984754	2L_7984754_SNP [dm3] 2L_7984754_SNP [dm6]	G	A	8.788e^-6	0.502	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11912956	3L_11912956_SNP [dm3] 3L_11919856_SNP [dm6]	G	T	8.842e^-6	0.502	INTRON CG44837
3R	17158006	3R_17158006_SNP [dm3] 3R_21332284_SNP [dm6]	C	T	9.106e^-6	0.502	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9197960	2L_9197960_SNP [dm3] 2L_9197960_SNP [dm6]	T	A	1.005e^-5	0.538	INTRON tai
3L	12630125	3L_12630125_SNP [dm3] 3L_12637025_SNP [dm6]	C	G	1.048e^-5	0.546	INTRON CR32111
2R	20365146	2R_20365146_SNP [dm3] 2R_24477623_SNP [dm6]	A	G	1.109e^-5	0.558	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	1.131e^-5	0.558	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20358977	2R_20358977_SNP [dm3] 2R_24471454_SNP [dm6]	T	C	1.193e^-5	0.574	INTRON CG13579
X	14435561	X_14435561_SNP [dm3] X_14541528_SNP [dm6]	C	T	1.228e^-5	0.576	EXON CR45521
2L	4617180	2L_4617180_SNP [dm3] 2L_4617180_SNP [dm6]	T	G	1.282e^-5	0.586	INTERGENIC
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	1.341e^-5	0.591	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	3176107	2L_3176107_SNP [dm3] 2L_3176107_SNP [dm6]	G	T	1.400e^-5	0.591	INTRON CG34393
3R	18971533	3R_18971533_SNP [dm3] 3R_23145811_SNP [dm6]	G	T	1.424e^-5	0.591	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	2808187	3L_2808187_SNP [dm3] 3L_2808187_SNP [dm6]	A	G	1.487e^-5	0.591	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	7582571	X_7582571_SNP [dm3] X_7688538_SNP [dm6]	G	A	1.673e^-5	0.591	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25909513	3R_25909513_SNP [dm3] 3R_30083791_SNP [dm6]	G	T	1.708e^-5	0.591	INTRON sima
3R	9686170	3R_9686170_SNP [dm3] 3R_13860448_SNP [dm6]	C	G	1.715e^-5	0.591	INTERGENIC
2L	577966	2L_577966_SNP [dm3] 2L_577966_SNP [dm6]	T	C	1.733e^-5	0.591	UTR_5_PRIME Pph13	TF binding site mE1_TFBS_cad
3L	10377566	3L_10377566_SNP [dm3] 3L_10384466_SNP [dm6]	A	C	1.802e^-5	0.591	INTERGENIC
2R	18005133	2R_18005133_SNP [dm3] 2R_22117628_SNP [dm6]	A	C	1.871e^-5	0.591	INTRON Vrp1
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	1.991e^-5	0.591	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1931658	2L_1931658_SNP [dm3] 2L_1931658_SNP [dm6]	G	C	2.122e^-5	0.591	INTRON CG7337
2R	9203492	2R_9203492_SNP [dm3] 2R_13315987_SNP [dm6]	G	A	2.139e^-5	0.591	INTERGENIC
3L	14709758	3L_14709758_SNP [dm3] 3L_14716658_SNP [dm6]	T	C	2.210e^-5	0.591	INTRON ome	regulatory region REDfly_CRMs
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	2.214e^-5	0.591	INTRON CG42313
3L	10378565	3L_10378565_SNP [dm3] 3L_10385465_SNP [dm6]	G	A	2.261e^-5	0.591	UPSTREAM CR45245 INTERGENIC
2L	12722329	2L_12722329_SNP [dm3] 2L_12722329_SNP [dm6]	C	G	2.278e^-5	0.591	START_GAINED MRP UTR_5_PRIME MRP UPSTREAM CG5792 INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	2.328e^-5	0.591	INTERGENIC
X	20219354	X_20219354_SNP [dm3] X_20348327_SNP [dm6]	G	C	2.337e^-5	0.591	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4839089	X_4839089_SNP [dm3] X_4945056_SNP [dm6]	A	G	2.404e^-5	0.591	INTRON Ptp4E
3R	23052589	3R_23052589_SNP [dm3] 3R_27226867_SNP [dm6]	G	T	2.417e^-5	0.591	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14282010	2L_14282010_SNP [dm3] 2L_14282010_SNP [dm6]	C	T	2.423e^-5	0.591	INTRON wb	TF binding site mE1_TFBS_cad
3L	16924626	3L_16924626_SNP [dm3] 3L_16931526_SNP [dm6]	A	T	2.440e^-5	0.591	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	15591834	3R_15591834_SNP [dm3] 3R_19766112_SNP [dm6]	A	T	2.451e^-5	0.591	INTRON GluClalpha
2L	14290209	2L_14290209_SNP [dm3] 2L_14290209_SNP [dm6]	C	T	2.501e^-5	0.591	UPSTREAM CR43639 INTRON wb	TF binding site mE1_TFBS_chinmo
2L	577967	2L_577967_SNP [dm3] 2L_577967_SNP [dm6]	T	C	2.683e^-5	0.591	UTR_5_PRIME Pph13	TF binding site mE1_TFBS_cad
3R	16596148	3R_16596148_SNP [dm3] 3R_20770426_SNP [dm6]	G	T	2.755e^-5	0.591	DOWNSTREAM Takl1 INTRON Syp	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2R	10542085	2R_10542085_SNP [dm3] 2R_14654580_SNP [dm6]	C	G	2.766e^-5	0.591	INTERGENIC
3R	20396578	3R_20396578_SNP [dm3] 3R_24570856_SNP [dm6]	G	T	2.792e^-5	0.591	INTRON CG13624
2L	15176639	2L_15176639_SNP [dm3] 2L_15176639_SNP [dm6]	G	A	2.899e^-5	0.591	INTRON CG4168
3R	22696118	3R_22696118_SNP [dm3] 3R_26870396_SNP [dm6]	T	C	2.919e^-5	0.591	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12721530	2L_12721530_SNP [dm3] 2L_12721530_SNP [dm6]	A	G	2.940e^-5	0.591	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	2.978e^-5	0.591	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	16543887	2L_16543887_SNP [dm3] 2L_16543887_SNP [dm6]	C	A	2.986e^-5	0.591	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12727225	2L_12727225_SNP [dm3] 2L_12727225_SNP [dm6]	T	G	3.007e^-5	0.591	INTRON MRP
3L	12630150	3L_12630150_SNP [dm3] 3L_12637050_SNP [dm6]	A	C	3.084e^-5	0.591	INTRON CR32111
2L	12724589	2L_12724589_SNP [dm3] 2L_12724589_SNP [dm6]	C	T	3.195e^-5	0.591	SYNONYMOUS_CODING MRP INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19572941	2L_19572941_SNP [dm3] 2L_19572941_SNP [dm6]	C	G	3.321e^-5	0.591	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	23475233	3R_23475233_SNP [dm3] 3R_27649511_SNP [dm6]	C	T	3.345e^-5	0.591	UTR_5_PRIME tau INTRON tau
2L	9181030	2L_9181030_SNP [dm3] 2L_9181030_SNP [dm6]	C	T	3.379e^-5	0.591	INTRON tai
3L	2717613	3L_2717613_SNP [dm3] 3L_2717613_SNP [dm6]	T	C	3.404e^-5	0.591	DOWNSTREAM Mrtf INTERGENIC
2R	14218931	2R_14218931_SNP [dm3] 2R_18331426_SNP [dm6]	G	A	3.413e^-5	0.591	INTRON sbb
X	11098538	X_11098538_DEL [dm3] X_11204505_DEL [dm6]	TT	T	3.429e^-5	0.591	INTERGENIC
X	3270711	X_3270711_SNP [dm3] X_3376678_SNP [dm6]	A	C	3.444e^-5	0.591	INTRON dm & 1 other
3R	13765205	3R_13765205_SNP [dm3] 3R_17939483_SNP [dm6]	C	T	3.510e^-5	0.591	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13765207	3R_13765207_SNP [dm3] 3R_17939485_SNP [dm6]	A	G	3.510e^-5	0.591	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14282612	2L_14282612_SNP [dm3] 2L_14282612_SNP [dm6]	C	T	3.543e^-5	0.591	INTRON wb
2R	10932478	2R_10932478_SNP [dm3] 2R_15044973_SNP [dm6]	G	C	3.567e^-5	0.591	INTERGENIC
2R	10542130	2R_10542130_DEL [dm3] 2R_14654625_DEL [dm6]	CCAACAC	TG	3.623e^-5	0.591	INTERGENIC
2L	14277924	2L_14277924_SNP [dm3] 2L_14277924_SNP [dm6]	A	T	3.646e^-5	0.591	UTR_3_PRIME CG32971 INTRON wb
X	11072409	X_11072409_SNP [dm3] X_11178376_SNP [dm6]	T	A	3.747e^-5	0.591	INTERGENIC
2R	10542141	2R_10542141_DEL [dm3] 2R_14654636_DEL [dm6]	AATGCAAAACACAAAGA...	A	3.790e^-5	0.591	INTERGENIC
3R	26169789	3R_26169789_SNP [dm3] 3R_30344067_SNP [dm6]	A	T	3.829e^-5	0.591	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2R	11883363	2R_11883363_SNP [dm3] 2R_15995858_SNP [dm6]	A	G	3.862e^-5	0.591	SYNONYMOUS_CODING ATPCL
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	3.995e^-5	0.591	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25145604	3R_25145604_SNP [dm3] 3R_29319882_SNP [dm6]	A	C	4.016e^-5	0.591	UPSTREAM Cnx99A INTERGENIC
X	11072233	X_11072233_SNP [dm3] X_11178200_SNP [dm6]	G	T	4.100e^-5	0.591	INTERGENIC
2L	6702311	2L_6702311_SNP [dm3] 2L_6702311_SNP [dm6]	G	A	4.145e^-5	0.591	INTRON Tsp
2R	10544454	2R_10544454_SNP [dm3] 2R_14656949_SNP [dm6]	T	C	4.148e^-5	0.591	NON_SYNONYMOUS_CODING Adgf-E
2L	17811197	2L_17811197_SNP [dm3] 2L_17811197_SNP [dm6]	T	C	4.170e^-5	0.591	DOWNSTREAM CG42830 INTRON CadN2
X	19737729	X_19737729_SNP [dm3] X_19843696_SNP [dm6]	A	G	4.189e^-5	0.591	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	10377546	3L_10377546_SNP [dm3] 3L_10384446_SNP [dm6]	A	C	4.215e^-5	0.591	INTERGENIC
2R	10541823	2R_10541823_SNP [dm3] 2R_14654318_SNP [dm6]	A	C	4.230e^-5	0.591	INTERGENIC
3L	10377696	3L_10377696_DEL [dm3] 3L_10384596_DEL [dm6]	AA	A	4.360e^-5	0.591	INTERGENIC
3R	13256597	3R_13256597_SNP [dm3] 3R_17430875_SNP [dm6]	A	G	4.375e^-5	0.591	INTRON CG5873
3R	18971572	3R_18971572_SNP [dm3] 3R_23145850_SNP [dm6]	C	T	4.383e^-5	0.591	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	6770740	3L_6770740_SNP [dm3] 3L_6777640_SNP [dm6]	A	G	4.458e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16083283	X_16083283_SNP [dm3] X_16189250_SNP [dm6]	C	T	4.543e^-5	0.591	INTERGENIC
2L	10148167	2L_10148167_SNP [dm3] 2L_10148167_SNP [dm6]	C	G	4.550e^-5	0.591	INTRON CG44153 & 1 other
3R	20499020	3R_20499020_SNP [dm3] 3R_24673298_SNP [dm6]	T	G	4.613e^-5	0.591	INTRON slo
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	4.615e^-5	0.591	INTERGENIC
3L	10378012	3L_10378012_SNP [dm3] 3L_10384912_SNP [dm6]	A	G	4.618e^-5	0.591	INTERGENIC
2L	16543982	2L_16543982_SNP [dm3] 2L_16543982_SNP [dm6]	C	G	4.638e^-5	0.591	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6702314	2L_6702314_SNP [dm3] 2L_6702314_SNP [dm6]	A	G	4.672e^-5	0.591	INTRON Tsp
X	16833215	X_16833215_SNP [dm3] X_16939182_SNP [dm6]	A	G	4.684e^-5	0.591	SYNONYMOUS_CODING wus DOWNSTREAM CG4928	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2929225	2L_2929225_SNP [dm3] 2L_2929225_SNP [dm6]	T	A	4.687e^-5	0.591	INTRON lilli
3R	22778897	3R_22778897_SNP [dm3] 3R_26953175_SNP [dm6]	A	C	4.738e^-5	0.591	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	497942	2L_497942_SNP [dm3] 2L_497942_SNP [dm6]	A	G	4.764e^-5	0.591	INTRON ush
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	4.776e^-5	0.591	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
3R	24893549	3R_24893549_DEL [dm3] 3R_29067827_DEL [dm6]	TTAT	A	4.789e^-5	0.591	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	4.813e^-5	0.591	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
2R	10541920	2R_10541920_SNP [dm3] 2R_14654415_SNP [dm6]	G	A	4.855e^-5	0.591	INTERGENIC
3R	8280116	3R_8280116_SNP [dm3] 3R_12454394_SNP [dm6]	A	C	4.888e^-5	0.591	INTRON CG18549	TF binding site BDTNP1_TFBS_prd
2L	2929482	2L_2929482_SNP [dm3] 2L_2929482_SNP [dm6]	G	A	5.014e^-5	0.591	INTRON lilli
3L	6771270	3L_6771270_SNP [dm3] 3L_6778170_SNP [dm6]	C	T	5.108e^-5	0.591	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	12630155	3L_12630155_SNP [dm3] 3L_12637055_SNP [dm6]	A	G	5.118e^-5	0.591	INTRON CR32111
3L	10377618	3L_10377618_SNP [dm3] 3L_10384518_SNP [dm6]	A	C	5.151e^-5	0.591	INTERGENIC
2L	14276340	2L_14276340_SNP [dm3] 2L_14276340_SNP [dm6]	C	T	5.168e^-5	0.591	UPSTREAM CG32971 INTRON wb & 1 other
2R	20366332	2R_20366332_SNP [dm3] 2R_24478809_SNP [dm6]	C	A	5.184e^-5	0.591	INTRON CG13579
3L	6570608	3L_6570608_SNP [dm3] 3L_6577508_SNP [dm6]	A	G	5.192e^-5	0.591	INTRON CG18769 & 1 other
3L	10762573	3L_10762573_SNP [dm3] 3L_10769473_SNP [dm6]	T	G	5.257e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	20366350	2R_20366350_INS [dm3] 2R_24478827_INS [dm6]	C	CC	5.289e^-5	0.591	INTRON CG13579
3L	14199946	3L_14199946_SNP [dm3] 3L_14206846_SNP [dm6]	G	A	5.377e^-5	0.591	INTRON nuf	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5733021	2L_5733021_SNP [dm3] 2L_5733021_SNP [dm6]	A	C	5.391e^-5	0.591	DOWNSTREAM CG11147 INTRON CG11030
2R	10542229	2R_10542229_SNP [dm3] 2R_14654724_SNP [dm6]	T	C	5.397e^-5	0.591	INTERGENIC
2L	14290221	2L_14290221_SNP [dm3] 2L_14290221_SNP [dm6]	T	C	5.449e^-5	0.591	UPSTREAM CR43639 INTRON wb	TF binding site mE1_TFBS_chinmo
3R	25145987	3R_25145987_SNP [dm3] 3R_29320265_SNP [dm6]	C	T	5.461e^-5	0.591	UPSTREAM Cnx99A INTERGENIC	TF binding site mE1_TFBS_h
3R	22610117	3R_22610117_SNP [dm3] 3R_26784395_SNP [dm6]	G	A	5.466e^-5	0.591	NON_SYNONYMOUS_CODING CG42790 UPSTREAM CG42789
3R	18246625	3R_18246625_SNP [dm3] 3R_22420903_SNP [dm6]	G	T	5.477e^-5	0.591	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	5.482e^-5	0.591	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	5648561	3R_5648561_SNP [dm3] 3R_9822839_SNP [dm6]	T	C	5.491e^-5	0.591	DOWNSTREAM CG34302 INTERGENIC
2R	17820101	2R_17820101_SNP [dm3] 2R_21932596_SNP [dm6]	T	G	5.569e^-5	0.591	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20365097	2R_20365097_SNP [dm3] 2R_24477574_SNP [dm6]	T	C	5.588e^-5	0.591	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	4102826	3R_4102826_SNP [dm3] 3R_8277104_SNP [dm6]	A	G	5.668e^-5	0.591	UPSTREAM ato INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20366749	2R_20366749_SNP [dm3] 2R_24479226_SNP [dm6]	A	G	5.694e^-5	0.591	INTRON CG13579
3R	13775063	3R_13775063_SNP [dm3] 3R_17949341_SNP [dm6]	G	A	5.699e^-5	0.591	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	20367863	2R_20367863_SNP [dm3] 2R_24480340_SNP [dm6]	A	G	5.715e^-5	0.591	INTRON CG13579
3R	15016049	3R_15016049_SNP [dm3] 3R_19190327_SNP [dm6]	A	G	5.775e^-5	0.591	NON_SYNONYMOUS_CODING CG31475	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16652785	X_16652785_DEL [dm3] X_16758752_DEL [dm6]	TT	T	5.798e^-5	0.591	INTRON if
2R	16762358	2R_16762358_SNP [dm3] 2R_20874853_SNP [dm6]	C	T	5.813e^-5	0.591	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
3R	21529357	3R_21529357_SNP [dm3] 3R_25703635_SNP [dm6]	G	T	5.850e^-5	0.591	INTRON LpR2
3L	14400917	3L_14400917_SNP [dm3] 3L_14407817_SNP [dm6]	A	T	5.890e^-5	0.591	INTRON stwl
3L	14400923	3L_14400923_DEL [dm3] 3L_14407823_DEL [dm6]	ATAGTT	A	5.890e^-5	0.591	INTRON stwl
2L	12726718	2L_12726718_SNP [dm3] 2L_12726718_SNP [dm6]	G	C	5.934e^-5	0.591	INTRON MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5718211	X_5718211_SNP [dm3] X_5824178_SNP [dm6]	G	C	5.958e^-5	0.591	INTRON CG15765
2R	19398776	2R_19398776_SNP [dm3] 2R_23511253_SNP [dm6]	C	T	6.036e^-5	0.591	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13765469	3R_13765469_INS [dm3] 3R_17939747_INS [dm6]	G	GCGTTT	6.056e^-5	0.591	INTRON cpo	TF binding site mE1_TFBS_sens
3L	18158141	3L_18158141_SNP [dm3] 3L_18165041_SNP [dm6]	A	T	6.089e^-5	0.591	INTERGENIC
2L	16543927	2L_16543927_DEL [dm3] 2L_16543927_DEL [dm6]	TCAAGTTATT	T	6.131e^-5	0.591	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14308993	3R_14308993_SNP [dm3] 3R_18483271_SNP [dm6]	G	A	6.136e^-5	0.591	INTRON fru
2L	12728637	2L_12728637_SNP [dm3] 2L_12728637_SNP [dm6]	T	A	6.159e^-5	0.591	NON_SYNONYMOUS_CODING MRP INTRON MRP
2R	4331321	2R_4331321_SNP [dm3] 2R_8443816_SNP [dm6]	C	T	6.196e^-5	0.591	UPSTREAM Cyp4e2 INTERGENIC
X	2307565	X_2307565_SNP [dm3] X_2413532_SNP [dm6]	C	T	6.203e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2136269	2L_2136269_SNP [dm3] 2L_2136269_SNP [dm6]	G	A	6.239e^-5	0.591	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad
3R	11812360	3R_11812360_SNP [dm3] 3R_15986638_SNP [dm6]	G	A	6.249e^-5	0.591	UTR_5_PRIME srp EXON CR44133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17370907	2R_17370907_SNP [dm3] 2R_21483402_SNP [dm6]	A	G	6.269e^-5	0.591	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8087738	3R_8087738_SNP [dm3] 3R_12262016_SNP [dm6]	G	C	6.275e^-5	0.591	SPLICE_SITE_DONOR CG44037 DOWNSTREAM CG44038 INTRON svp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	14914469	2L_14914469_SNP [dm3] 2L_14914469_SNP [dm6]	A	G	6.299e^-5	0.591	INTRON CG42313	TF binding site mE1_TFBS_HSA
3R	8280154	3R_8280154_SNP [dm3] 3R_12454432_SNP [dm6]	G	A	6.299e^-5	0.591	INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	20362876	2R_20362876_SNP [dm3] 2R_24475353_SNP [dm6]	A	G	6.317e^-5	0.591	UPSTREAM CG16837 DOWNSTREAM CG3494 INTRON CG13579
2L	8521332	2L_8521332_SNP [dm3] 2L_8521332_SNP [dm6]	A	C	6.327e^-5	0.591	SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	12630105	3L_12630105_SNP [dm3] 3L_12637005_SNP [dm6]	A	T	6.347e^-5	0.591	INTRON CR32111
3L	12630107	3L_12630107_SNP [dm3] 3L_12637007_SNP [dm6]	A	T	6.347e^-5	0.591	INTRON CR32111
3R	15462950	3R_15462950_SNP [dm3] 3R_19637228_SNP [dm6]	G	A	6.347e^-5	0.591	SYNONYMOUS_CODING subdued
2L	21293954	2L_21293954_SNP [dm3] 2L_21293954_SNP [dm6]	C	T	6.383e^-5	0.591	UPSTREAM Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_dl
3L	12630056	3L_12630056_DEL [dm3] 3L_12636956_DEL [dm6]	AAACGGACTATAAAGTTCAA...	A	6.388e^-5	0.591	INTRON CR32111
2R	20366740	2R_20366740_SNP [dm3] 2R_24479217_SNP [dm6]	G	A	6.415e^-5	0.591	INTRON CG13579
3R	15463325	3R_15463325_SNP [dm3] 3R_19637603_SNP [dm6]	C	T	6.480e^-5	0.591	SYNONYMOUS_CODING subdued
2R	20365101	2R_20365101_SNP [dm3] 2R_24477578_SNP [dm6]	G	A	6.500e^-5	0.591	INTRON CG13579	TF binding site mE1_TFBS_chinmo
X	16018200	X_16018200_SNP [dm3] X_16124167_SNP [dm6]	A	T	6.504e^-5	0.591	UTR_5_PRIME disco-r INTRON disco-r	TF binding site mE1_TFBS_inv
3R	18249849	3R_18249849_SNP [dm3] 3R_22424127_SNP [dm6]	T	C	6.540e^-5	0.591	DOWNSTREAM mats INTRON pinta
3R	11005753	3R_11005753_SNP [dm3] 3R_15180031_SNP [dm6]	G	C	6.585e^-5	0.591	UPSTREAM Mf INTRON Gyc88E & 1 other
X	7524949	X_7524949_SNP [dm3] X_7630916_SNP [dm6]	C	G	6.597e^-5	0.591	INTRON ct	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17169120	X_17169120_DEL [dm3] X_17275087_DEL [dm6]	TA	T	6.606e^-5	0.591	UPSTREAM f INTRON f
2L	1573665	2L_1573665_SNP [dm3] 2L_1573665_SNP [dm6]	G	A	6.615e^-5	0.591	INTRON haf
3L	14400880	3L_14400880_SNP [dm3] 3L_14407780_SNP [dm6]	A	T	6.686e^-5	0.591	INTRON stwl	TF binding site BDTNP1_TFBS_dl
3R	15462384	3R_15462384_SNP [dm3] 3R_19636662_SNP [dm6]	A	T	6.698e^-5	0.591	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	6389265	3L_6389265_SNP [dm3] 3L_6396165_SNP [dm6]	T	A	6.721e^-5	0.591	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13765223	3R_13765223_SNP [dm3] 3R_17939501_SNP [dm6]	C	T	6.731e^-5	0.591	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11098535	X_11098535_SNP [dm3] X_11204502_SNP [dm6]	T	A	6.767e^-5	0.591	INTERGENIC
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	6.790e^-5	0.591	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
2L	701476	2L_701476_SNP [dm3] 2L_701476_SNP [dm6]	G	A	6.803e^-5	0.591	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14400851	3L_14400851_SNP [dm3] 3L_14407751_SNP [dm6]	G	C	6.830e^-5	0.591	INTRON stwl	TF binding site BDTNP1_TFBS_dl
X	8796211	X_8796211_SNP [dm3] X_8902178_SNP [dm6]	G	A	6.849e^-5	0.591	SYNONYMOUS_CODING Rbm13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11098508	X_11098508_SNP [dm3] X_11204475_SNP [dm6]	T	G	6.871e^-5	0.591	INTERGENIC
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	7.033e^-5	0.591	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8340834	3R_8340834_SNP [dm3] 3R_12515112_SNP [dm6]	G	A	7.074e^-5	0.591	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
2R	18183598	2R_18183598_SNP [dm3] 2R_22296093_SNP [dm6]	A	G	7.083e^-5	0.591	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
3R	26169735	3R_26169735_SNP [dm3] 3R_30344013_SNP [dm6]	C	G	7.084e^-5	0.591	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	757024	2L_757024_SNP [dm3] 2L_757024_SNP [dm6]	A	T	7.092e^-5	0.591	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	22400416	3L_22400416_INS [dm3] 3L_22407316_INS [dm6]	G	GG	7.096e^-5	0.591	UTR_5_PRIME Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14400868	3L_14400868_SNP [dm3] 3L_14407768_SNP [dm6]	C	A	7.115e^-5	0.591	INTRON stwl	TF binding site BDTNP1_TFBS_dl
3L	9411247	3L_9411247_SNP [dm3] 3L_9418147_SNP [dm6]	A	C	7.134e^-5	0.591	UPSTREAM CG3982 INTRON CG3967
3L	5978775	3L_5978775_SNP [dm3] 3L_5985675_SNP [dm6]	A	G	7.220e^-5	0.591	INTERGENIC
2L	8521314	2L_8521314_SNP [dm3] 2L_8521314_SNP [dm6]	G	C	7.228e^-5	0.591	NON_SYNONYMOUS_CODING CG13091 UPSTREAM Acer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
2L	529575	2L_529575_SNP [dm3] 2L_529575_SNP [dm6]	A	T	7.260e^-5	0.591	INTRON ush	regulatory region REDfly_CRMs
3R	15461960	3R_15461960_SNP [dm3] 3R_19636238_SNP [dm6]	A	T	7.283e^-5	0.591	DOWNSTREAM CG34138 INTRON subdued
3R	13647609	3R_13647609_DEL [dm3] 3R_17821887_DEL [dm6]	TTT	T	7.300e^-5	0.591	SPLICE_SITE_REGION tinc INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	25389073	3R_25389073_SNP [dm3] 3R_29563351_SNP [dm6]	G	T	7.309e^-5	0.591	INTRON Dr
2L	8520050	2L_8520050_SNP [dm3] 2L_8520050_SNP [dm6]	T	C	7.362e^-5	0.591	DOWNSTREAM CG13090 INTRON CG13091	TF binding site mE1_TFBS_chinmo
3R	20396647	3R_20396647_SNP [dm3] 3R_24570925_SNP [dm6]	T	A	7.368e^-5	0.591	INTRON CG13624
2L	14274964	2L_14274964_SNP [dm3] 2L_14274964_SNP [dm6]	G	C	7.376e^-5	0.591	UPSTREAM CR44729 INTRON wb & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	760040	2L_760040_SNP [dm3] 2L_760040_SNP [dm6]	T	A	7.575e^-5	0.591	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2L	608982	2L_608982_SNP [dm3] 2L_608982_SNP [dm6]	T	G	7.586e^-5	0.591	EXON CR43649
X	7582580	X_7582580_SNP [dm3] X_7688547_SNP [dm6]	A	G	7.587e^-5	0.591	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	20193568	2R_20193568_SNP [dm3] 2R_24306045_SNP [dm6]	G	A	7.595e^-5	0.591	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14117009	3L_14117009_INS [dm3] 3L_14123909_INS [dm6]	C	CC	7.606e^-5	0.591	INTRON Sox21b
3R	20366964	3R_20366964_SNP [dm3] 3R_24541242_SNP [dm6]	A	G	7.627e^-5	0.591	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_twi
3R	6653660	3R_6653660_SNP [dm3] 3R_10827938_SNP [dm6]	G	A	7.650e^-5	0.591	UTR_5_PRIME Cad86C INTRON Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11098524	X_11098524_SNP [dm3] X_11204491_SNP [dm6]	T	C	7.654e^-5	0.591	INTERGENIC
3R	13765188	3R_13765188_SNP [dm3] 3R_17939466_SNP [dm6]	G	T	7.686e^-5	0.591	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10932455	2R_10932455_SNP [dm3] 2R_15044950_SNP [dm6]	T	A	7.709e^-5	0.591	INTERGENIC
3R	20366955	3R_20366955_SNP [dm3] 3R_24541233_SNP [dm6]	T	C	7.729e^-5	0.591	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_twi
2L	1556204	2L_1556204_SNP [dm3] 2L_1556204_SNP [dm6]	G	A	7.759e^-5	0.591	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1556211	2L_1556211_SNP [dm3] 2L_1556211_SNP [dm6]	T	C	7.759e^-5	0.591	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14407833	3L_14407833_SNP [dm3] 3L_14414733_SNP [dm6]	C	T	7.774e^-5	0.591	INTRON bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16550132	2L_16550132_SNP [dm3] 2L_16550132_SNP [dm6]	G	C	7.807e^-5	0.591	UPSTREAM CG5968 INTRON CG42389
X	17168741	X_17168741_SNP [dm3] X_17274708_SNP [dm6]	G	A	7.827e^-5	0.591	UPSTREAM f INTRON f
3L	6840566	3L_6840566_SNP [dm3] 3L_6847466_SNP [dm6]	A	C	7.832e^-5	0.591	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12630166	3L_12630166_SNP [dm3] 3L_12637066_SNP [dm6]	A	C	7.870e^-5	0.591	INTRON CR32111
3L	2316239	3L_2316239_SNP [dm3] 3L_2316239_SNP [dm6]	C	T	7.913e^-5	0.591	DOWNSTREAM CR45427 INTERGENIC
2L	9175912	2L_9175912_SNP [dm3] 2L_9175912_SNP [dm6]	T	A	7.923e^-5	0.591	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10063982	3L_10063982_INS [dm3] 3L_10070882_INS [dm6]	T	TT	7.998e^-5	0.591	INTRON dpr6
2R	10932463	2R_10932463_SNP [dm3] 2R_15044958_SNP [dm6]	A	T	8.071e^-5	0.591	INTERGENIC
3R	18246517	3R_18246517_DEL [dm3] 3R_22420795_DEL [dm6]	AG	T	8.096e^-5	0.591	SPLICE_SITE_REGION Nop56 UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14914304	2L_14914304_SNP [dm3] 2L_14914304_SNP [dm6]	T	G	8.125e^-5	0.591	NON_SYNONYMOUS_CODING CG42313	TF binding site mE1_TFBS_HSA
3R	16201886	3R_16201886_SNP [dm3] 3R_20376164_SNP [dm6]	C	A	8.130e^-5	0.591	INTERGENIC
3R	23210314	3R_23210314_SNP [dm3] 3R_27384592_SNP [dm6]	A	G	8.175e^-5	0.591	INTRON side
X	11071844	X_11071844_SNP [dm3] X_11177811_SNP [dm6]	A	G	8.191e^-5	0.591	INTERGENIC
3L	8634326	3L_8634326_SNP [dm3] 3L_8641226_SNP [dm6]	C	T	8.214e^-5	0.591	INTRON Cpr66D
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	8.233e^-5	0.591	INTRON fne
X	19737942	X_19737942_SNP [dm3] X_19843909_SNP [dm6]	A	G	8.279e^-5	0.591	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16229346	3L_16229346_SNP [dm3] 3L_16236246_SNP [dm6]	C	A	8.292e^-5	0.591	UTR_3_PRIME l_3_72Dp
2R	18798021	2R_18798021_SNP [dm3] 2R_22910498_SNP [dm6]	A	G	8.302e^-5	0.591	INTRON nahoda
3R	10375055	3R_10375055_DEL [dm3] 3R_14549333_DEL [dm6]	TT	T	8.341e^-5	0.591	INTRON Pde6
3R	16429543	3R_16429543_SNP [dm3] 3R_20603821_SNP [dm6]	A	G	8.349e^-5	0.591	DOWNSTREAM tRNA:CR31506 INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	8.411e^-5	0.591	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8800749	2L_8800749_SNP [dm3] 2L_8800749_SNP [dm6]	T	A	8.437e^-5	0.591	INTERGENIC
2L	14295500	2L_14295500_SNP [dm3] 2L_14295500_SNP [dm6]	A	T	8.478e^-5	0.591	UPSTREAM CR43640 INTRON wb
3L	3122564	3L_3122564_SNP [dm3] 3L_3122564_SNP [dm6]	A	G	8.547e^-5	0.591	UPSTREAM tRNA:CR32273 INTRON prominin-like
2L	5197312	2L_5197312_SNP [dm3] 2L_5197312_SNP [dm6]	C	A	8.567e^-5	0.591	INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	14400938	3L_14400938_SNP [dm3] 3L_14407838_SNP [dm6]	A	T	8.619e^-5	0.591	INTRON stwl
3R	15462387	3R_15462387_SNP [dm3] 3R_19636665_SNP [dm6]	G	A	8.671e^-5	0.591	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	16303826	3L_16303826_SNP [dm3] 3L_16310726_SNP [dm6]	G	C	8.715e^-5	0.591	EXON CR32160
3R	6836517	3R_6836517_DEL [dm3] 3R_11010795_DEL [dm6]	GAAAATGTAGCTTCTC...	G	8.726e^-5	0.591	INTRON CG34114
3R	7200177	3R_7200177_SNP [dm3] 3R_11374455_SNP [dm6]	T	C	8.777e^-5	0.591	SYNONYMOUS_CODING pros	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	8.778e^-5	0.591	INTRON fne
3L	12630180	3L_12630180_SNP [dm3] 3L_12637080_SNP [dm6]	A	T	8.801e^-5	0.591	INTRON CR32111
3L	10842584	3L_10842584_SNP [dm3] 3L_10849484_SNP [dm6]	A	G	8.864e^-5	0.591	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13551293	3R_13551293_SNP [dm3] 3R_17725571_SNP [dm6]	C	G	8.867e^-5	0.591	UPSTREAM Lgr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	12721545	2L_12721545_SNP [dm3] 2L_12721545_SNP [dm6]	A	G	8.884e^-5	0.591	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8798983	2L_8798983_SNP [dm3] 2L_8798983_SNP [dm6]	C	T	8.887e^-5	0.591	INTERGENIC
3R	10138040	3R_10138040_SNP [dm3] 3R_14312318_SNP [dm6]	A	G	8.918e^-5	0.591	SYNONYMOUS_CODING CG31321
3R	17879003	3R_17879003_SNP [dm3] 3R_22053281_SNP [dm6]	G	A	8.934e^-5	0.591	INTRON how	regulatory region REDfly_CRMs
X	16082928	X_16082928_SNP [dm3] X_16188895_SNP [dm6]	T	C	8.938e^-5	0.591	INTERGENIC
2R	18852800	2R_18852800_SNP [dm3] 2R_22965277_SNP [dm6]	C	A	8.977e^-5	0.591	INTERGENIC
2L	5677054	2L_5677054_SNP [dm3] 2L_5677054_SNP [dm6]	G	C	8.987e^-5	0.591	INTERGENIC
X	11071840	X_11071840_SNP [dm3] X_11177807_SNP [dm6]	A	T	8.987e^-5	0.591	INTERGENIC
2R	10551083	2R_10551083_SNP [dm3] 2R_14663578_SNP [dm6]	C	G	8.996e^-5	0.591	DOWNSTREAM CG12861 INTERGENIC
X	11098629	X_11098629_SNP [dm3] X_11204596_SNP [dm6]	C	A	9.055e^-5	0.591	INTERGENIC
2L	10792132	2L_10792132_SNP [dm3] 2L_10792132_SNP [dm6]	A	C	9.080e^-5	0.591	DOWNSTREAM CG31870 INTRON CG31869
3R	10193750	3R_10193750_SNP [dm3] 3R_14368028_SNP [dm6]	G	T	9.112e^-5	0.591	INTRON NK7.1
2L	14295731	2L_14295731_SNP [dm3] 2L_14295731_SNP [dm6]	A	G	9.237e^-5	0.591	UPSTREAM CR43640 INTRON wb
2R	20362891	2R_20362891_INS [dm3] 2R_24475368_INS [dm6]	A	AGTA	9.239e^-5	0.591	UPSTREAM CG16837 DOWNSTREAM CG3494 INTRON CG13579
2L	8528721	2L_8528721_SNP [dm3] 2L_8528721_SNP [dm6]	A	G	9.242e^-5	0.591	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5733081	2L_5733081_SNP [dm3] 2L_5733081_SNP [dm6]	C	A	9.248e^-5	0.591	DOWNSTREAM CG11147 INTRON CG11030
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	9.267e^-5	0.591	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1141003	2L_1141003_SNP [dm3] 2L_1141003_SNP [dm6]	C	T	9.300e^-5	0.591	UTR_3_PRIME CG4577 DOWNSTREAM CG4577
3R	24350631	3R_24350631_DEL [dm3] 3R_28524909_DEL [dm6]	GAGG	G	9.311e^-5	0.591	CODON_DELETION Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8800750	2L_8800750_SNP [dm3] 2L_8800750_SNP [dm6]	G	A	9.315e^-5	0.591	INTERGENIC
2L	8521447	2L_8521447_SNP [dm3] 2L_8521447_SNP [dm6]	C	T	9.358e^-5	0.591	UPSTREAM Acer INTRON CG13091	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Ubx
3L	9391212	3L_9391212_SNP [dm3] 3L_9398112_SNP [dm6]	C	T	9.361e^-5	0.591	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	6278651	2L_6278651_INS [dm3] 2L_6278651_INS [dm6]	T	TTCT	9.385e^-5	0.591	INTRON Ddr
2L	1287438	2L_1287438_SNP [dm3] 2L_1287438_SNP [dm6]	G	T	9.434e^-5	0.591	INTRON robo3
2R	16841707	2R_16841707_INS [dm3] 2R_20954202_INS [dm6]	T	TAT	9.439e^-5	0.591	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
X	6106493	X_6106493_DEL [dm3] X_6212460_DEL [dm6]	TATATATAT	CG	9.450e^-5	0.591	INTERGENIC
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	9.476e^-5	0.591	INTRON CG4998	TF binding site mE1_TFBS_cad
3L	14447335	3L_14447335_SNP [dm3] 3L_14454235_SNP [dm6]	G	T	9.565e^-5	0.591	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16550133	2L_16550133_SNP [dm3] 2L_16550133_SNP [dm6]	T	C	9.581e^-5	0.591	UPSTREAM CG5968 INTRON CG42389
3L	12630119	3L_12630119_SNP [dm3] 3L_12637019_SNP [dm6]	G	A	9.593e^-5	0.591	INTRON CR32111
2L	1966776	2L_1966776_SNP [dm3] 2L_1966776_SNP [dm6]	A	T	9.661e^-5	0.591	INTRON erm	TF binding site BDTNP1_TFBS_da
3R	13647555	3R_13647555_INS [dm3] 3R_17821833_INS [dm6]	T	TGCTA	9.675e^-5	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	18737224	X_18737224_SNP [dm3] X_18843191_SNP [dm6]	A	C	9.811e^-5	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	10541722	2R_10541722_SNP [dm3] 2R_14654217_SNP [dm6]	G	A	9.879e^-5	0.591	INTERGENIC
3L	8548731	3L_8548731_SNP [dm3] 3L_8555631_SNP [dm6]	T	C	9.955e^-5	0.591	INTRON rhea
3R	25145552	3R_25145552_SNP [dm3] 3R_29319830_SNP [dm6]	A	T	1.005e^-4	0.591	UPSTREAM Cnx99A INTERGENIC
3L	10781177	3L_10781177_SNP [dm3] 3L_10788077_SNP [dm6]	G	C	1.006e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15981666	3R_15981666_SNP [dm3] 3R_20155944_SNP [dm6]	A	C	1.008e^-4	0.591	INTERGENIC
2R	12397194	2R_12397194_SNP [dm3] 2R_16509689_SNP [dm6]	C	G	1.013e^-4	0.591	INTRON Sema-2a
3L	16298742	3L_16298742_SNP [dm3] 3L_16305642_SNP [dm6]	G	C	1.017e^-4	0.591	SYNONYMOUS_CODING CG13043 UPSTREAM CG13063 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14005066	2L_14005066_SNP [dm3] 2L_14005066_SNP [dm6]	C	T	1.018e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10792138	2L_10792138_SNP [dm3] 2L_10792138_SNP [dm6]	G	A	1.021e^-4	0.591	DOWNSTREAM CG31870 INTRON CG31869
2L	14096416	2L_14096416_SNP [dm3] 2L_14096416_SNP [dm6]	A	T	1.022e^-4	0.591	INTERGENIC
2L	579986	2L_579986_SNP [dm3] 2L_579986_SNP [dm6]	C	T	1.024e^-4	0.591	DOWNSTREAM Pph13 INTERGENIC
3R	21679097	3R_21679097_SNP [dm3] 3R_25853375_SNP [dm6]	G	A	1.026e^-4	0.591	SYNONYMOUS_CODING CG5886
X	16832597	X_16832597_SNP [dm3] X_16938564_SNP [dm6]	A	T	1.028e^-4	0.591	UTR_3_PRIME wus DOWNSTREAM CG4928
2L	8528842	2L_8528842_SNP [dm3] 2L_8528842_SNP [dm6]	T	G	1.032e^-4	0.591	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10658910	2L_10658910_SNP [dm3] 2L_10658910_SNP [dm6]	T	C	1.032e^-4	0.591	DOWNSTREAM CR45692 & 1 other INTERGENIC
X	4732668	X_4732668_SNP [dm3] X_4838635_SNP [dm6]	T	C	1.041e^-4	0.591	INTERGENIC
2L	5199319	2L_5199319_SNP [dm3] 2L_5199319_SNP [dm6]	T	A	1.043e^-4	0.591	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	5199321	2L_5199321_SNP [dm3] 2L_5199321_SNP [dm6]	G	A	1.043e^-4	0.591	INTRON Msp300	TF binding site mE1_TFBS_cad
3L	689481	3L_689481_SNP [dm3] 3L_689481_SNP [dm6]	C	T	1.046e^-4	0.591	SYNONYMOUS_CODING CG32483	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18737157	X_18737157_SNP [dm3] X_18843124_SNP [dm6]	A	G	1.056e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	19738224	X_19738224_SNP [dm3] X_19844191_SNP [dm6]	G	A	1.057e^-4	0.591	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10542103	2R_10542103_INS [dm3] 2R_14654598_INS [dm6]	T	TTATGTT	1.058e^-4	0.591	INTERGENIC
2R	10542108	2R_10542108_SNP [dm3] 2R_14654603_SNP [dm6]	C	A	1.058e^-4	0.591	INTERGENIC
2R	10542110	2R_10542110_SNP [dm3] 2R_14654605_SNP [dm6]	G	T	1.058e^-4	0.591	INTERGENIC
2R	10542114	2R_10542114_SNP [dm3] 2R_14654609_SNP [dm6]	T	A	1.058e^-4	0.591	INTERGENIC
3R	5645800	3R_5645800_SNP [dm3] 3R_9820078_SNP [dm6]	T	C	1.058e^-4	0.591	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
3R	22412585	3R_22412585_DEL [dm3] 3R_26586863_DEL [dm6]	TT	T	1.060e^-4	0.591	UTR_3_PRIME scrib INTRON scrib
3L	12048093	3L_12048093_SNP [dm3] 3L_12054993_SNP [dm6]	T	C	1.060e^-4	0.591	INTRON rols
X	18737090	X_18737090_DEL [dm3] X_18843057_DEL [dm6]	CCACGATTATCGCATACCCG...	C	1.066e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	transposable element FlyBase
3R	14597115	3R_14597115_SNP [dm3] 3R_18771393_SNP [dm6]	A	G	1.067e^-4	0.591	INTRON CG7720
3R	13647561	3R_13647561_SNP [dm3] 3R_17821839_SNP [dm6]	A	C	1.071e^-4	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	9662981	2R_9662981_SNP [dm3] 2R_13775476_SNP [dm6]	A	G	1.075e^-4	0.591	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3R	10375300	3R_10375300_SNP [dm3] 3R_14549578_SNP [dm6]	T	A	1.085e^-4	0.591	INTRON Pde6
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	1.091e^-4	0.591	INTRON CG12207
3R	21679124	3R_21679124_SNP [dm3] 3R_25853402_SNP [dm6]	A	G	1.091e^-4	0.591	SYNONYMOUS_CODING CG5886
3R	10131669	3R_10131669_SNP [dm3] 3R_14305947_SNP [dm6]	G	A	1.093e^-4	0.591	INTRON su_Hw_
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	1.099e^-4	0.591	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2L	9166726	2L_9166726_DEL [dm3] 2L_9166726_DEL [dm6]	ACCTG	A	1.100e^-4	0.591	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	9166732	2L_9166732_DEL [dm3] 2L_9166732_DEL [dm6]	ACACTACTGTTAGCCAAC...	A	1.100e^-4	0.591	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	2668574	2L_2668574_SNP [dm3] 2L_2668574_SNP [dm6]	T	G	1.106e^-4	0.591	INTERGENIC
3L	16298523	3L_16298523_SNP [dm3] 3L_16305423_SNP [dm6]	G	A	1.108e^-4	0.591	SYNONYMOUS_CODING CG13043 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7942769	3R_7942769_SNP [dm3] 3R_12117047_SNP [dm6]	C	A	1.120e^-4	0.591	INTERGENIC
X	18737165	X_18737165_SNP [dm3] X_18843132_SNP [dm6]	A	T	1.124e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3L	8721158	3L_8721158_SNP [dm3] 3L_8728058_SNP [dm6]	C	A	1.129e^-4	0.591	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
3R	15461953	3R_15461953_SNP [dm3] 3R_19636231_SNP [dm6]	T	A	1.129e^-4	0.591	DOWNSTREAM CG34138 INTRON subdued
2R	4391057	2R_4391057_SNP [dm3] 2R_8503552_SNP [dm6]	T	G	1.130e^-4	0.591	INTRON mtt
2L	1436800	2L_1436800_SNP [dm3] 2L_1436800_SNP [dm6]	A	G	1.134e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5645723	3R_5645723_SNP [dm3] 3R_9820001_SNP [dm6]	G	A	1.139e^-4	0.591	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
2R	8928540	2R_8928540_SNP [dm3] 2R_13041035_SNP [dm6]	C	A	1.144e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3176106	2L_3176106_SNP [dm3] 2L_3176106_SNP [dm6]	A	G	1.147e^-4	0.591	INTRON CG34393
2L	14277922	2L_14277922_SNP [dm3] 2L_14277922_SNP [dm6]	A	G	1.148e^-4	0.591	UTR_3_PRIME CG32971 INTRON wb
3R	23190890	3R_23190890_SNP [dm3] 3R_27365168_SNP [dm6]	G	C	1.150e^-4	0.591	INTRON CG42534
X	17169098	X_17169098_SNP [dm3] X_17275065_SNP [dm6]	C	T	1.152e^-4	0.591	UPSTREAM f INTRON f
X	15842086	X_15842086_SNP [dm3] X_15948053_SNP [dm6]	G	T	1.159e^-4	0.591	UTR_3_PRIME mmd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10157048	3R_10157048_SNP [dm3] 3R_14331326_SNP [dm6]	A	T	1.161e^-4	0.591	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13533731	2R_13533731_SNP [dm3] 2R_17646226_SNP [dm6]	A	T	1.164e^-4	0.591	DOWNSTREAM CCHa1-R INTERGENIC
3R	13647569	3R_13647569_SNP [dm3] 3R_17821847_SNP [dm6]	A	G	1.165e^-4	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	18253503	3R_18253503_SNP [dm3] 3R_22427781_SNP [dm6]	C	T	1.167e^-4	0.591	SYNONYMOUS_CODING CG13847
3L	2686057	3L_2686057_SNP [dm3] 3L_2686057_SNP [dm6]	A	G	1.170e^-4	0.591	INTRON Fife
X	17166384	X_17166384_SNP [dm3] X_17272351_SNP [dm6]	T	C	1.173e^-4	0.591	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	504941	2L_504941_SNP [dm3] 2L_504941_SNP [dm6]	C	T	1.175e^-4	0.591	INTRON ush
3R	14335581	3R_14335581_SNP [dm3] 3R_18509859_SNP [dm6]	C	A	1.182e^-4	0.591	INTRON fru
X	11098603	X_11098603_SNP [dm3] X_11204570_SNP [dm6]	A	G	1.183e^-4	0.591	INTERGENIC
2R	14643924	2R_14643924_SNP [dm3] 2R_18756419_SNP [dm6]	A	G	1.183e^-4	0.591	DOWNSTREAM Jabba INTRON Cyp12b2
2R	4515780	2R_4515780_SNP [dm3] 2R_8628275_SNP [dm6]	T	C	1.192e^-4	0.591	SYNONYMOUS_CODING CG14749 UPSTREAM beta3GalTII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1570716	2L_1570716_SNP [dm3] 2L_1570716_SNP [dm6]	T	G	1.198e^-4	0.591	INTRON haf
3R	13647564	3R_13647564_INS [dm3] 3R_17821842_INS [dm6]	G	GC	1.199e^-4	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13647570	3R_13647570_SNP [dm3] 3R_17821848_SNP [dm6]	T	C	1.200e^-4	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	11155337	X_11155337_SNP [dm3] X_11261304_SNP [dm6]	A	T	1.201e^-4	0.591	INTRON CG44422
3R	8138964	3R_8138964_SNP [dm3] 3R_12313242_SNP [dm6]	A	C	1.203e^-4	0.591	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5199326	2L_5199326_SNP [dm3] 2L_5199326_SNP [dm6]	C	T	1.204e^-4	0.591	INTRON Msp300	TF binding site mE1_TFBS_cad
X	11072237	X_11072237_SNP [dm3] X_11178204_SNP [dm6]	T	C	1.214e^-4	0.591	INTERGENIC
X	11200802	X_11200802_SNP [dm3] X_11306769_SNP [dm6]	T	G	1.217e^-4	0.591	INTERGENIC
2L	2007974	2L_2007974_SNP [dm3] 2L_2007974_SNP [dm6]	T	C	1.229e^-4	0.591	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
3L	18484474	3L_18484474_SNP [dm3] 3L_18491374_SNP [dm6]	T	C	1.232e^-4	0.591	INTRON AstC-R2
3R	25262680	3R_25262680_SNP [dm3] 3R_29436958_SNP [dm6]	T	G	1.234e^-4	0.591	INTRON Ptp99A
3R	15461979	3R_15461979_MNP [dm3] 3R_19636257_MNP [dm6]	ACC	GTT	1.235e^-4	0.591	DOWNSTREAM CG34138 INTRON subdued
2L	630414	2L_630414_SNP [dm3] 2L_630414_SNP [dm6]	A	T	1.235e^-4	0.591	INTERGENIC
2L	749676	2L_749676_SNP [dm3] 2L_749676_SNP [dm6]	T	A	1.235e^-4	0.591	UPSTREAM GABA-B-R3 INTERGENIC
2L	12555204	2L_12555204_SNP [dm3] 2L_12555204_SNP [dm6]	C	A	1.241e^-4	0.591	INTERGENIC
3R	1697105	3R_1697105_SNP [dm3] 3R_5871383_SNP [dm6]	G	A	1.242e^-4	0.591	INTRON CG34113
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	1.243e^-4	0.591	INTERGENIC
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	1.244e^-4	0.591	INTRON nAChRalpha3
2L	10660350	2L_10660350_SNP [dm3] 2L_10660350_SNP [dm6]	C	G	1.251e^-4	0.591	INTERGENIC
3L	14975552	3L_14975552_SNP [dm3] 3L_14982452_SNP [dm6]	T	C	1.254e^-4	0.591	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7984202	2L_7984202_SNP [dm3] 2L_7984202_SNP [dm6]	G	C	1.255e^-4	0.591	UTR_5_PRIME CG7231 UPSTREAM Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1531950	3L_1531950_SNP [dm3] 3L_1531950_SNP [dm6]	C	A	1.256e^-4	0.591	SYNONYMOUS_CODING CG12090 UPSTREAM Ir62a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13074936	2L_13074936_SNP [dm3] 2L_13074936_SNP [dm6]	C	T	1.264e^-4	0.591	INTERGENIC
2L	16550143	2L_16550143_SNP [dm3] 2L_16550143_SNP [dm6]	G	C	1.268e^-4	0.591	UPSTREAM CG5968 INTRON CG42389
2R	20371070	2R_20371070_SNP [dm3] 2R_24483547_SNP [dm6]	C	G	1.272e^-4	0.591	INTRON CG13579
2R	10542107	2R_10542107_SNP [dm3] 2R_14654602_SNP [dm6]	C	A	1.273e^-4	0.591	INTERGENIC
2L	9179936	2L_9179936_SNP [dm3] 2L_9179936_SNP [dm6]	A	G	1.276e^-4	0.591	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12729537	2L_12729537_SNP [dm3] 2L_12729537_SNP [dm6]	A	T	1.276e^-4	0.591	INTRON MRP
2L	530772	2L_530772_SNP [dm3] 2L_530772_SNP [dm6]	A	G	1.276e^-4	0.591	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	22991630	3R_22991630_SNP [dm3] 3R_27165908_SNP [dm6]	A	T	1.276e^-4	0.591	SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	16544073	2L_16544073_DEL [dm3] 2L_16544073_DEL [dm6]	ATCTGG	A	1.278e^-4	0.591	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20365082	2R_20365082_SNP [dm3] 2R_24477559_SNP [dm6]	G	A	1.279e^-4	0.591	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	14278146	2L_14278146_SNP [dm3] 2L_14278146_SNP [dm6]	G	T	1.280e^-4	0.591	DOWNSTREAM CG32971 INTRON wb
2L	12721539	2L_12721539_SNP [dm3] 2L_12721539_SNP [dm6]	G	A	1.280e^-4	0.591	SYNONYMOUS_CODING CG5792 UPSTREAM MRP INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	19764495	2L_19764495_SNP [dm3] 2L_19764495_SNP [dm6]	C	A	1.284e^-4	0.591	UPSTREAM fbp INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1702878	2L_1702878_SNP [dm3] 2L_1702878_SNP [dm6]	T	A	1.285e^-4	0.591	UTR_3_PRIME chinmo
2R	20369116	2R_20369116_SNP [dm3] 2R_24481593_SNP [dm6]	T	C	1.290e^-4	0.591	INTRON CG13579
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.291e^-4	0.591	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10344565	2L_10344565_INS [dm3] 2L_10344565_INS [dm6]	A	AAAA	1.304e^-4	0.591	UTR_5_PRIME CG5022 DOWNSTREAM Sps2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3827724	2L_3827724_SNP [dm3] 2L_3827724_SNP [dm6]	T	A	1.306e^-4	0.591	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4708093	2L_4708093_SNP [dm3] 2L_4708093_SNP [dm6]	A	G	1.307e^-4	0.591	INTRON CG34351
3R	1704414	3R_1704414_SNP [dm3] 3R_5878692_SNP [dm6]	G	A	1.310e^-4	0.591	SPLICE_SITE_REGION CG34113 INTRON CG34113
3R	10734239	3R_10734239_SNP [dm3] 3R_14908517_SNP [dm6]	T	C	1.312e^-4	0.591	INTERGENIC
3R	18971608	3R_18971608_SNP [dm3] 3R_23145886_SNP [dm6]	G	T	1.314e^-4	0.591	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	17919211	3L_17919211_DEL [dm3] 3L_17926111_DEL [dm6]	TA	T	1.315e^-4	0.591	INTERGENIC
2L	9166593	2L_9166593_SNP [dm3] 2L_9166593_SNP [dm6]	T	C	1.323e^-4	0.591	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	9166643	2L_9166643_SNP [dm3] 2L_9166643_SNP [dm6]	C	A	1.323e^-4	0.591	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	16544154	2L_16544154_SNP [dm3] 2L_16544154_SNP [dm6]	T	C	1.324e^-4	0.591	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16363211	2R_16363211_SNP [dm3] 2R_20475706_SNP [dm6]	C	T	1.339e^-4	0.591	INTRON CG12484
3L	21072849	3L_21072849_SNP [dm3] 3L_21079749_SNP [dm6]	A	C	1.341e^-4	0.591	INTRON ko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	11072470	X_11072470_SNP [dm3] X_11178437_SNP [dm6]	G	T	1.343e^-4	0.591	INTERGENIC
3R	13647562	3R_13647562_INS [dm3] 3R_17821840_INS [dm6]	A	AACAC	1.348e^-4	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	8525344	2L_8525344_SNP [dm3] 2L_8525344_SNP [dm6]	G	A	1.350e^-4	0.591	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	8525346	2L_8525346_SNP [dm3] 2L_8525346_SNP [dm6]	C	T	1.350e^-4	0.591	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	8375615	3R_8375615_SNP [dm3] 3R_12549893_SNP [dm6]	C	A	1.354e^-4	0.591	DOWNSTREAM Octbeta2R INTERGENIC
3R	15982085	3R_15982085_SNP [dm3] 3R_20156363_SNP [dm6]	T	C	1.358e^-4	0.591	INTERGENIC
2L	1514228	2L_1514228_SNP [dm3] 2L_1514228_SNP [dm6]	C	T	1.362e^-4	0.591	INTERGENIC
2L	8540166	2L_8540166_SNP [dm3] 2L_8540166_SNP [dm6]	A	T	1.368e^-4	0.591	INTRON CG17834
3R	15463352	3R_15463352_SNP [dm3] 3R_19637630_SNP [dm6]	A	G	1.368e^-4	0.591	INTRON subdued
3L	17919478	3L_17919478_SNP [dm3] 3L_17926378_SNP [dm6]	T	C	1.378e^-4	0.591	INTERGENIC
2R	19827149	2R_19827149_SNP [dm3] 2R_23939626_SNP [dm6]	G	C	1.392e^-4	0.591	SYNONYMOUS_CODING CG3735 UPSTREAM Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18737232	X_18737232_SNP [dm3] X_18843199_SNP [dm6]	T	G	1.395e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18158179	3L_18158179_SNP [dm3] 3L_18165079_SNP [dm6]	T	C	1.399e^-4	0.591	INTERGENIC
3R	16498899	3R_16498899_SNP [dm3] 3R_20673177_SNP [dm6]	T	C	1.403e^-4	0.591	DOWNSTREAM Cpr92F INTERGENIC
2L	19572670	2L_19572670_SNP [dm3] 2L_19572670_SNP [dm6]	G	C	1.404e^-4	0.591	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10292532	2L_10292532_SNP [dm3] 2L_10292532_SNP [dm6]	G	C	1.411e^-4	0.591	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	6570565	3L_6570565_SNP [dm3] 3L_6577465_SNP [dm6]	T	C	1.411e^-4	0.591	INTRON CG18769 & 1 other
2R	18252867	2R_18252867_SNP [dm3] 2R_22365362_SNP [dm6]	T	A	1.411e^-4	0.591	INTRON Liprin-gamma
2L	14276372	2L_14276372_SNP [dm3] 2L_14276372_SNP [dm6]	T	C	1.415e^-4	0.591	UPSTREAM CG32971 INTRON wb & 1 other
2L	16500854	2L_16500854_SNP [dm3] 2L_16500854_SNP [dm6]	T	C	1.418e^-4	0.591	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14268972	2L_14268972_SNP [dm3] 2L_14268972_SNP [dm6]	C	T	1.420e^-4	0.591	INTRON wb	TF binding site mE1_TFBS_sens
3L	10491232	3L_10491232_SNP [dm3] 3L_10498132_SNP [dm6]	T	A	1.427e^-4	0.591	INTRON A2bp1
3R	25302799	3R_25302799_SNP [dm3] 3R_29477077_SNP [dm6]	G	A	1.438e^-4	0.591	INTRON Ptp99A
2L	1548662	2L_1548662_SNP [dm3] 2L_1548662_SNP [dm6]	G	A	1.439e^-4	0.591	INTERGENIC
2R	8690650	2R_8690650_SNP [dm3] 2R_12803145_SNP [dm6]	C	G	1.442e^-4	0.591	INTERGENIC
2L	13907381	2L_13907381_SNP [dm3] 2L_13907381_SNP [dm6]	G	T	1.454e^-4	0.591	INTRON Ance
2L	10854462	2L_10854462_SNP [dm3] 2L_10854462_SNP [dm6]	G	T	1.454e^-4	0.591	UTR_3_PRIME CG43129 & 1 other
2L	12693965	2L_12693965_SNP [dm3] 2L_12693965_SNP [dm6]	A	T	1.457e^-4	0.591	UTR_3_PRIME CG5780 DOWNSTREAM CG6153
2L	8111229	2L_8111229_SNP [dm3] 2L_8111229_SNP [dm6]	G	A	1.457e^-4	0.591	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9607800	3R_9607800_SNP [dm3] 3R_13782078_SNP [dm6]	C	A	1.466e^-4	0.591	UTR_3_PRIME CG9286 UPSTREAM Dip-B
2R	16765967	2R_16765967_SNP [dm3] 2R_20878462_SNP [dm6]	C	G	1.471e^-4	0.591	UTR_3_PRIME Ipk1 INTRON Ipk1
2L	6982127	2L_6982127_SNP [dm3] 2L_6982127_SNP [dm6]	G	A	1.472e^-4	0.591	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	8570467	3L_8570467_SNP [dm3] 3L_8577367_SNP [dm6]	T	C	1.472e^-4	0.591	UTR_5_PRIME CG43078	TF binding site mE1_TFBS_HSA
2L	4813276	2L_4813276_SNP [dm3] 2L_4813276_SNP [dm6]	T	C	1.472e^-4	0.591	UTR_5_PRIME CG15629
3R	21528550	3R_21528550_SNP [dm3] 3R_25702828_SNP [dm6]	T	G	1.473e^-4	0.591	INTRON LpR2
X	3270382	X_3270382_SNP [dm3] X_3376349_SNP [dm6]	C	T	1.477e^-4	0.591	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	1.485e^-4	0.591	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2R	17397317	2R_17397317_DEL [dm3] 2R_21509812_DEL [dm6]	TTTTACGT	T	1.485e^-4	0.591	INTRON MESK2
3R	15461974	3R_15461974_SNP [dm3] 3R_19636252_SNP [dm6]	A	T	1.488e^-4	0.591	DOWNSTREAM CG34138 INTRON subdued
3R	22991417	3R_22991417_SNP [dm3] 3R_27165695_SNP [dm6]	A	T	1.488e^-4	0.591	UPSTREAM spn-D & 1 other DOWNSTREAM ppk31 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	10378313	3L_10378313_SNP [dm3] 3L_10385213_SNP [dm6]	T	C	1.491e^-4	0.591	INTERGENIC
3L	982189	3L_982189_SNP [dm3] 3L_982189_SNP [dm6]	C	G	1.491e^-4	0.591	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1
3R	13647539	3R_13647539_SNP [dm3] 3R_17821817_SNP [dm6]	G	A	1.494e^-4	0.591	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13362068	3R_13362068_SNP [dm3] 3R_17536346_SNP [dm6]	T	C	1.496e^-4	0.591	SYNONYMOUS_CODING P5cr-2 DOWNSTREAM l_3_07882	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18737207	X_18737207_SNP [dm3] X_18843174_SNP [dm6]	C	T	1.497e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	11072502	X_11072502_DEL [dm3] X_11178469_DEL [dm6]	TTGTTTATATCAAAAT...	T	1.499e^-4	0.591	INTERGENIC
X	4806680	X_4806680_SNP [dm3] X_4912647_SNP [dm6]	T	G	1.499e^-4	0.591	INTRON CG32772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1480033	2L_1480033_SNP [dm3] 2L_1480033_SNP [dm6]	C	A	1.501e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	13855690	X_13855690_SNP [dm3] X_13961657_SNP [dm6]	T	A	1.501e^-4	0.591	INTRON mamo
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	1.506e^-4	0.591	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3226219	X_3226219_SNP [dm3] X_3332186_SNP [dm6]	C	T	1.519e^-4	0.591	INTRON CR44886 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	10092872	3R_10092872_SNP [dm3] 3R_14267150_SNP [dm6]	T	C	1.519e^-4	0.591	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8338130	3R_8338130_SNP [dm3] 3R_12512408_SNP [dm6]	G	C	1.520e^-4	0.591	UTR_3_PRIME Octbeta3R DOWNSTREAM Hsp70Bc	TF binding site mE1_TFBS_cad
3R	25909499	3R_25909499_DEL [dm3] 3R_30083777_DEL [dm6]	ATGTGAACCA	A	1.522e^-4	0.591	INTRON sima
3R	9607738	3R_9607738_SNP [dm3] 3R_13782016_SNP [dm6]	A	G	1.523e^-4	0.591	SYNONYMOUS_CODING CG9286 UPSTREAM Dip-B
3L	6770819	3L_6770819_SNP [dm3] 3L_6777719_SNP [dm6]	A	T	1.523e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10864330	2R_10864330_SNP [dm3] 2R_14976825_SNP [dm6]	A	T	1.525e^-4	0.591	INTRON ckn
2L	12694236	2L_12694236_SNP [dm3] 2L_12694236_SNP [dm6]	T	C	1.526e^-4	0.591	SYNONYMOUS_CODING CG5780 UPSTREAM PICK1 DOWNSTREAM CG6153
3R	18921526	3R_18921526_SNP [dm3] 3R_23095804_SNP [dm6]	G	T	1.527e^-4	0.591	SYNONYMOUS_CODING CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9605530	3R_9605530_SNP [dm3] 3R_13779808_SNP [dm6]	T	A	1.536e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9605542	3R_9605542_SNP [dm3] 3R_13779820_SNP [dm6]	A	G	1.536e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9605544	3R_9605544_INS [dm3] 3R_13779822_INS [dm6]	T	TGC	1.536e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9605546	3R_9605546_INS [dm3] 3R_13779824_INS [dm6]	A	AAAC	1.536e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9605561	3R_9605561_SNP [dm3] 3R_13779839_SNP [dm6]	G	T	1.536e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18475610	3L_18475610_SNP [dm3] 3L_18482510_SNP [dm6]	A	C	1.551e^-4	0.591	INTERGENIC
X	17158672	X_17158672_SNP [dm3] X_17264639_SNP [dm6]	G	A	1.555e^-4	0.591	UPSTREAM f INTRON f
2R	10542113	2R_10542113_SNP [dm3] 2R_14654608_SNP [dm6]	A	T	1.560e^-4	0.591	INTERGENIC
2L	7103078	2L_7103078_INS [dm3] 2L_7103078_INS [dm6]	G	GGTACAGAG	1.567e^-4	0.591	INTRON Pvf3
2R	14232032	2R_14232032_DEL [dm3] 2R_18344527_DEL [dm6]	ATGCT	A	1.580e^-4	0.591	INTRON sbb
3R	8342670	3R_8342670_DEL [dm3] 3R_12516948_DEL [dm6]	CCGACTGCGC	C	1.580e^-4	0.591	CODON_DELETION Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9168295	2L_9168295_SNP [dm3] 2L_9168295_SNP [dm6]	G	A	1.587e^-4	0.591	INTRON tai	TF binding site BDTNP1_TFBS_dl
2R	19840021	2R_19840021_SNP [dm3] 2R_23952498_SNP [dm6]	G	A	1.588e^-4	0.591	DOWNSTREAM CG3803 & 2 others INTERGENIC
2L	10912628	2L_10912628_SNP [dm3] 2L_10912628_SNP [dm6]	G	T	1.589e^-4	0.591	INTERGENIC
2L	10912639	2L_10912639_SNP [dm3] 2L_10912639_SNP [dm6]	C	T	1.589e^-4	0.591	INTERGENIC
2L	14294905	2L_14294905_SNP [dm3] 2L_14294905_SNP [dm6]	C	A	1.591e^-4	0.591	SPLICE_SITE_REGION CR43640 INTRON wb EXON CR43640
2L	1702876	2L_1702876_SNP [dm3] 2L_1702876_SNP [dm6]	C	T	1.593e^-4	0.591	UTR_3_PRIME chinmo
3R	9605537	3R_9605537_MNP [dm3] 3R_13779815_MNP [dm6]	CCGG	GAAT	1.597e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14647030	3R_14647030_SNP [dm3] 3R_18821308_SNP [dm6]	C	T	1.598e^-4	0.591	INTRON CG18208
3R	10119384	3R_10119384_SNP [dm3] 3R_14293662_SNP [dm6]	G	A	1.605e^-4	0.591	INTRON CG12207
3R	15461970	3R_15461970_SNP [dm3] 3R_19636248_SNP [dm6]	G	A	1.609e^-4	0.591	DOWNSTREAM CG34138 INTRON subdued
3R	21264445	3R_21264445_SNP [dm3] 3R_25438723_SNP [dm6]	G	T	1.610e^-4	0.591	INTRON Fur1
2R	9203466	2R_9203466_SNP [dm3] 2R_13315961_SNP [dm6]	T	G	1.614e^-4	0.591	INTERGENIC
3R	10152895	3R_10152895_SNP [dm3] 3R_14327173_SNP [dm6]	A	G	1.617e^-4	0.591	UTR_5_PRIME CG3321 UPSTREAM Afti & 1 other INTRON CG3321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14295743	2L_14295743_SNP [dm3] 2L_14295743_SNP [dm6]	T	C	1.621e^-4	0.591	UPSTREAM CR43640 INTRON wb
2L	16544079	2L_16544079_INS [dm3] 2L_16544079_INS [dm6]	A	AATAA	1.621e^-4	0.591	UPSTREAM CG42389 DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11893618	3L_11893618_SNP [dm3] 3L_11900518_SNP [dm6]	G	A	1.622e^-4	0.591	DOWNSTREAM CR43624 INTRON CG44837
X	11071856	X_11071856_SNP [dm3] X_11177823_SNP [dm6]	C	T	1.624e^-4	0.591	INTERGENIC
2L	8525349	2L_8525349_SNP [dm3] 2L_8525349_SNP [dm6]	C	T	1.636e^-4	0.591	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2L	601167	2L_601167_SNP [dm3] 2L_601167_SNP [dm6]	A	T	1.638e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	9284083	X_9284083_SNP [dm3] X_9390050_SNP [dm6]	A	T	1.640e^-4	0.591	INTRON mgl
2R	12519307	2R_12519307_SNP [dm3] 2R_16631802_SNP [dm6]	G	A	1.649e^-4	0.591	SYNONYMOUS_CODING Alk
2L	1101647	2L_1101647_SNP [dm3] 2L_1101647_SNP [dm6]	T	A	1.649e^-4	0.591	INTRON CG4629
X	11098600	X_11098600_SNP [dm3] X_11204567_SNP [dm6]	C	G	1.654e^-4	0.591	INTERGENIC
3R	25146015	3R_25146015_SNP [dm3] 3R_29320293_SNP [dm6]	A	T	1.656e^-4	0.591	UPSTREAM Cnx99A INTERGENIC	TF binding site mE1_TFBS_h
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	1.658e^-4	0.591	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
X	11273271	X_11273271_SNP [dm3] X_11379238_SNP [dm6]	C	T	1.659e^-4	0.591	INTRON dlg1
X	11273305	X_11273305_SNP [dm3] X_11379272_SNP [dm6]	G	A	1.659e^-4	0.591	INTRON dlg1
2R	15035690	2R_15035690_SNP [dm3] 2R_19148185_SNP [dm6]	T	A	1.662e^-4	0.591	INTRON ena	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4047799	2L_4047799_SNP [dm3] 2L_4047799_SNP [dm6]	C	T	1.662e^-4	0.591	INTRON ed
3R	15461905	3R_15461905_SNP [dm3] 3R_19636183_SNP [dm6]	T	A	1.663e^-4	0.591	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2L	8524323	2L_8524323_SNP [dm3] 2L_8524323_SNP [dm6]	T	C	1.663e^-4	0.591	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18737168	X_18737168_SNP [dm3] X_18843135_SNP [dm6]	C	G	1.668e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	18737175	X_18737175_SNP [dm3] X_18843142_SNP [dm6]	C	G	1.668e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18737186	X_18737186_SNP [dm3] X_18843153_SNP [dm6]	A	G	1.668e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18737240	X_18737240_SNP [dm3] X_18843207_SNP [dm6]	A	T	1.668e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737252	X_18737252_SNP [dm3] X_18843219_SNP [dm6]	T	A	1.668e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	14277741	2L_14277741_SNP [dm3] 2L_14277741_SNP [dm6]	A	T	1.670e^-4	0.591	NON_SYNONYMOUS_CODING CG32971 INTRON wb
3R	9791203	3R_9791203_SNP [dm3] 3R_13965481_SNP [dm6]	A	G	1.671e^-4	0.591	SYNONYMOUS_CODING Orc2	TF binding site mE1_TFBS_sens
X	20219353	X_20219353_SNP [dm3] X_20348326_SNP [dm6]	C	T	1.673e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3398410	2L_3398410_SNP [dm3] 2L_3398410_SNP [dm6]	A	G	1.675e^-4	0.591	UTR_3_PRIME CG34175 UPSTREAM CR44792
2L	9168235	2L_9168235_SNP [dm3] 2L_9168235_SNP [dm6]	T	G	1.676e^-4	0.591	INTRON tai	TF binding site BDTNP1_TFBS_dl
2R	18978592	2R_18978592_SNP [dm3] 2R_23091069_SNP [dm6]	C	T	1.677e^-4	0.591	NON_SYNONYMOUS_CODING CG9876	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9605532	3R_9605532_MNP [dm3] 3R_13779810_MNP [dm6]	TATA	GCCG	1.677e^-4	0.591	DOWNSTREAM CG9297 INTRON CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	1.678e^-4	0.591	INTRON nAChRalpha3
3L	16380920	3L_16380920_SNP [dm3] 3L_16387820_SNP [dm6]	A	T	1.680e^-4	0.591	NON_SYNONYMOUS_CODING RAF2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17840876	3R_17840876_SNP [dm3] 3R_22015154_SNP [dm6]	A	G	1.680e^-4	0.591	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	11850491	3R_11850491_SNP [dm3] 3R_16024769_SNP [dm6]	A	T	1.681e^-4	0.591	INTERGENIC
3L	12417375	3L_12417375_SNP [dm3] 3L_12424275_SNP [dm6]	T	G	1.683e^-4	0.591	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10175274	2L_10175274_SNP [dm3] 2L_10175274_SNP [dm6]	C	A	1.684e^-4	0.591	INTRON CG44153
3R	25909561	3R_25909561_SNP [dm3] 3R_30083839_SNP [dm6]	C	A	1.686e^-4	0.591	INTRON sima	TF binding site mE1_TFBS_Trl
2L	16544641	2L_16544641_INS [dm3] 2L_16544641_INS [dm6]	A	ACATA	1.703e^-4	0.591	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8928543	2R_8928543_SNP [dm3] 2R_13041038_SNP [dm6]	T	C	1.710e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14662693	2R_14662693_SNP [dm3] 2R_18775188_SNP [dm6]	C	G	1.711e^-4	0.591	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15461954	3R_15461954_SNP [dm3] 3R_19636232_SNP [dm6]	T	A	1.714e^-4	0.591	DOWNSTREAM CG34138 INTRON subdued
X	16833785	X_16833785_SNP [dm3] X_16939752_SNP [dm6]	G	A	1.715e^-4	0.591	SYNONYMOUS_CODING wus
3R	2182521	3R_2182521_SNP [dm3] 3R_6356799_SNP [dm6]	A	G	1.716e^-4	0.591	SYNONYMOUS_CODING Pak
X	9284084	X_9284084_SNP [dm3] X_9390051_SNP [dm6]	G	A	1.718e^-4	0.591	INTRON mgl
X	9284085	X_9284085_INS [dm3] X_9390052_INS [dm6]	C	CAA	1.718e^-4	0.591	INTRON mgl
X	9284088	X_9284088_INS [dm3] X_9390055_INS [dm6]	T	TATCTACAACCTACAA...	1.718e^-4	0.591	INTRON mgl
X	9284090	X_9284090_SNP [dm3] X_9390057_SNP [dm6]	G	C	1.718e^-4	0.591	INTRON mgl
3L	10378455	3L_10378455_SNP [dm3] 3L_10385355_SNP [dm6]	A	T	1.720e^-4	0.591	INTERGENIC
2R	18852763	2R_18852763_SNP [dm3] 2R_22965240_SNP [dm6]	A	C	1.721e^-4	0.591	INTERGENIC
X	5845338	X_5845338_SNP [dm3] X_5951305_SNP [dm6]	A	C	1.723e^-4	0.591	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10848245	3L_10848245_DEL [dm3] 3L_10855145_DEL [dm6]	AACATGTAAAATACAAA...	A	1.725e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10514827	2R_10514827_SNP [dm3] 2R_14627322_SNP [dm6]	T	C	1.726e^-4	0.591	INTERGENIC
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	1.729e^-4	0.591	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3R	18246384	3R_18246384_SNP [dm3] 3R_22420662_SNP [dm6]	T	C	1.733e^-4	0.591	SYNONYMOUS_CODING Nop56 UPSTREAM mats	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18737163	X_18737163_SNP [dm3] X_18843130_SNP [dm6]	A	T	1.734e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3R	9723303	3R_9723303_SNP [dm3] 3R_13897581_SNP [dm6]	C	T	1.734e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10159698	3R_10159698_SNP [dm3] 3R_14333976_SNP [dm6]	G	A	1.734e^-4	0.591	INTRON NK7.1
X	18737234	X_18737234_SNP [dm3] X_18843201_SNP [dm6]	T	C	1.735e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	8092645	2L_8092645_SNP [dm3] 2L_8092645_SNP [dm6]	G	A	1.739e^-4	0.591	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5154234	2L_5154234_SNP [dm3] 2L_5154234_SNP [dm6]	C	G	1.745e^-4	0.591	INTRON Msp300	TF binding site mE1_TFBS_cad
X	18737202	X_18737202_INS [dm3] X_18843169_INS [dm6]	TA	CGTGTGGCTTGT...	1.746e^-4	0.591	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9607361	3R_9607361_SNP [dm3] 3R_13781639_SNP [dm6]	T	C	1.749e^-4	0.591	SYNONYMOUS_CODING CG9286 UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23210301	3R_23210301_SNP [dm3] 3R_27384579_SNP [dm6]	T	A	1.750e^-4	0.591	INTRON side
3R	21264472	3R_21264472_SNP [dm3] 3R_25438750_SNP [dm6]	A	C	1.759e^-4	0.592	INTRON Fur1
3R	23061210	3R_23061210_SNP [dm3] 3R_27235488_SNP [dm6]	A	G	1.760e^-4	0.592	INTRON CG31064 & 1 other
2L	13332004	2L_13332004_SNP [dm3] 2L_13332004_SNP [dm6]	T	C	1.761e^-4	0.592	UPSTREAM CG43778 INTERGENIC
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	1.769e^-4	0.592	INTRON CG18208
3L	16298426	3L_16298426_SNP [dm3] 3L_16305326_SNP [dm6]	A	T	1.772e^-4	0.592	UTR_3_PRIME CG13043 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9203429	2R_9203429_SNP [dm3] 2R_13315924_SNP [dm6]	T	A	1.781e^-4	0.592	INTERGENIC
3R	15766677	3R_15766677_SNP [dm3] 3R_19940955_SNP [dm6]	G	A	1.782e^-4	0.592	INTRON Hs6st
2R	10936977	2R_10936977_SNP [dm3] 2R_15049472_SNP [dm6]	A	T	1.784e^-4	0.592	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11595589	3L_11595589_SNP [dm3] 3L_11602489_SNP [dm6]	A	G	1.793e^-4	0.592	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	9606048	3R_9606048_SNP [dm3] 3R_13780326_SNP [dm6]	A	C	1.795e^-4	0.592	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18285757	3R_18285757_SNP [dm3] 3R_22460035_SNP [dm6]	A	C	1.801e^-4	0.592	SYNONYMOUS_CODING CG34376 DOWNSTREAM CG34376 & 1 other
3R	25745666	3R_25745666_SNP [dm3] 3R_29919944_SNP [dm6]	G	A	1.805e^-4	0.592	SYNONYMOUS_CODING trp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16543913	2L_16543913_SNP [dm3] 2L_16543913_SNP [dm6]	T	A	1.819e^-4	0.592	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8527696	2L_8527696_SNP [dm3] 2L_8527696_SNP [dm6]	C	T	1.820e^-4	0.592	SYNONYMOUS_CODING lmgB UTR_3_PRIME lmgA DOWNSTREAM lmgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	1.821e^-4	0.592	INTRON CG13917
X	18737255	X_18737255_SNP [dm3] X_18843222_SNP [dm6]	A	T	1.822e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26684770	3R_26684770_SNP [dm3] 3R_30859048_SNP [dm6]	A	G	1.822e^-4	0.592	INTERGENIC
X	11273287	X_11273287_SNP [dm3] X_11379254_SNP [dm6]	T	C	1.825e^-4	0.592	INTRON dlg1
3R	19337917	3R_19337917_SNP [dm3] 3R_23512195_SNP [dm6]	T	C	1.833e^-4	0.592	INTERGENIC
2R	10542465	2R_10542465_SNP [dm3] 2R_14654960_SNP [dm6]	A	T	1.837e^-4	0.592	INTERGENIC
3L	17814569	3L_17814569_SNP [dm3] 3L_17821469_SNP [dm6]	C	T	1.838e^-4	0.592	SYNONYMOUS_CODING Ir75c
3R	13480515	3R_13480515_SNP [dm3] 3R_17654793_SNP [dm6]	C	A	1.844e^-4	0.592	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
3R	15325040	3R_15325040_SNP [dm3] 3R_19499318_SNP [dm6]	C	T	1.844e^-4	0.592	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	19493931	3R_19493931_SNP [dm3] 3R_23668209_SNP [dm6]	A	G	1.846e^-4	0.592	INTRON CG31145
2R	20145229	2R_20145229_SNP [dm3] 2R_24257706_SNP [dm6]	G	A	1.846e^-4	0.592	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6770807	3L_6770807_SNP [dm3] 3L_6777707_SNP [dm6]	T	C	1.847e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	742378	2L_742378_SNP [dm3] 2L_742378_SNP [dm6]	C	A	1.850e^-4	0.592	UPSTREAM Eaat2 INTRON Eaat2
X	11273294	X_11273294_SNP [dm3] X_11379261_SNP [dm6]	G	A	1.861e^-4	0.592	INTRON dlg1
2L	11957528	2L_11957528_SNP [dm3] 2L_11957528_SNP [dm6]	G	T	1.869e^-4	0.592	EXON CR43314	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9972740	2L_9972740_SNP [dm3] 2L_9972740_SNP [dm6]	A	G	1.869e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12017648	3L_12017648_SNP [dm3] 3L_12024548_SNP [dm6]	T	C	1.873e^-4	0.592	INTRON rols
2L	15374929	2L_15374929_SNP [dm3] 2L_15374929_SNP [dm6]	A	C	1.874e^-4	0.592	INTERGENIC
3L	16298091	3L_16298091_SNP [dm3] 3L_16304991_SNP [dm6]	C	A	1.875e^-4	0.592	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15461926	3R_15461926_SNP [dm3] 3R_19636204_SNP [dm6]	A	T	1.878e^-4	0.592	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	11060613	3L_11060613_SNP [dm3] 3L_11067513_SNP [dm6]	T	C	1.886e^-4	0.592	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10687518	2L_10687518_SNP [dm3] 2L_10687518_SNP [dm6]	T	C	1.886e^-4	0.592	UPSTREAM CG7296 INTERGENIC
2R	18522083	2R_18522083_SNP [dm3] 2R_22634578_SNP [dm6]	G	T	1.889e^-4	0.592	SYNONYMOUS_CODING CG17807 DOWNSTREAM CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	757788	2L_757788_SNP [dm3] 2L_757788_SNP [dm6]	C	T	1.891e^-4	0.592	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
X	21890749	X_21890749_SNP [dm3] X_22488913_SNP [dm6]	A	T	1.891e^-4	0.592	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
X	18737019	X_18737019_SNP [dm3] X_18842986_SNP [dm6]	G	C	1.909e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2R	20371239	2R_20371239_SNP [dm3] 2R_24483716_SNP [dm6]	G	T	1.910e^-4	0.592	INTRON CG13579
2L	555042	2L_555042_SNP [dm3] 2L_555042_SNP [dm6]	G	A	1.911e^-4	0.592	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad
2L	556131	2L_556131_SNP [dm3] 2L_556131_SNP [dm6]	G	A	1.911e^-4	0.592	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13533730	2R_13533730_SNP [dm3] 2R_17646225_SNP [dm6]	A	T	1.915e^-4	0.592	DOWNSTREAM CCHa1-R INTERGENIC
2L	8528781	2L_8528781_SNP [dm3] 2L_8528781_SNP [dm6]	G	C	1.917e^-4	0.592	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18737236	X_18737236_SNP [dm3] X_18843203_SNP [dm6]	G	A	1.919e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737238	X_18737238_SNP [dm3] X_18843205_SNP [dm6]	C	A	1.919e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	26169857	3R_26169857_INS [dm3] 3R_30344135_INS [dm6]	G	GG	1.920e^-4	0.592	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10848239	3L_10848239_SNP [dm3] 3L_10855139_SNP [dm6]	G	A	1.923e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14285090	2L_14285090_SNP [dm3] 2L_14285090_SNP [dm6]	C	T	1.925e^-4	0.592	INTRON wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9166622	2L_9166622_INS [dm3] 2L_9166622_INS [dm6]	A	AAGC	1.926e^-4	0.592	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	9166632	2L_9166632_SNP [dm3] 2L_9166632_SNP [dm6]	T	C	1.926e^-4	0.592	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	9166633	2L_9166633_SNP [dm3] 2L_9166633_SNP [dm6]	T	A	1.926e^-4	0.592	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	9166662	2L_9166662_SNP [dm3] 2L_9166662_SNP [dm6]	C	T	1.926e^-4	0.592	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	14880380	2R_14880380_SNP [dm3] 2R_18992875_SNP [dm6]	A	G	1.933e^-4	0.592	INTRON tn
2L	14281866	2L_14281866_SNP [dm3] 2L_14281866_SNP [dm6]	C	T	1.938e^-4	0.592	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	2162995	3R_2162995_SNP [dm3] 3R_6337273_SNP [dm6]	C	A	1.944e^-4	0.592	DOWNSTREAM Osi19 INTERGENIC
3L	18479258	3L_18479258_SNP [dm3] 3L_18486158_SNP [dm6]	T	C	1.948e^-4	0.592	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
X	18737227	X_18737227_SNP [dm3] X_18843194_SNP [dm6]	A	T	1.949e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	18737229	X_18737229_SNP [dm3] X_18843196_SNP [dm6]	A	T	1.949e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	10544831	2R_10544831_SNP [dm3] 2R_14657326_SNP [dm6]	G	A	1.949e^-4	0.592	SYNONYMOUS_CODING Adgf-E
3R	5648578	3R_5648578_SNP [dm3] 3R_9822856_SNP [dm6]	A	G	1.965e^-4	0.592	DOWNSTREAM CG34302 INTERGENIC
X	18737262	X_18737262_SNP [dm3] X_18843229_SNP [dm6]	A	G	1.966e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	1942088	2L_1942088_SNP [dm3] 2L_1942088_SNP [dm6]	G	A	1.969e^-4	0.592	INTRON CG7337
3R	22412807	3R_22412807_SNP [dm3] 3R_26587085_SNP [dm6]	G	C	1.971e^-4	0.592	UTR_3_PRIME scrib INTRON scrib
3R	25744280	3R_25744280_SNP [dm3] 3R_29918558_SNP [dm6]	T	C	1.977e^-4	0.592	SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11667556	2L_11667556_SNP [dm3] 2L_11667556_SNP [dm6]	C	G	1.978e^-4	0.592	INTERGENIC
X	18737241	X_18737241_SNP [dm3] X_18843208_SNP [dm6]	A	C	1.981e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	23210341	3R_23210341_SNP [dm3] 3R_27384619_SNP [dm6]	T	C	1.985e^-4	0.592	INTRON side
3R	15982082	3R_15982082_SNP [dm3] 3R_20156360_SNP [dm6]	T	A	1.987e^-4	0.592	INTERGENIC
2L	14315440	2L_14315440_SNP [dm3] 2L_14315440_SNP [dm6]	A	T	1.987e^-4	0.592	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10646174	2L_10646174_DEL [dm3] 2L_10646174_DEL [dm6]	AAGTAGCCAAATCTATA...	A	1.989e^-4	0.592	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
3L	2580216	3L_2580216_SNP [dm3] 3L_2580216_SNP [dm6]	C	T	1.989e^-4	0.592	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6770813	3L_6770813_SNP [dm3] 3L_6777713_SNP [dm6]	A	G	1.989e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9166656	2L_9166656_SNP [dm3] 2L_9166656_SNP [dm6]	A	T	1.993e^-4	0.592	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	15322549	3R_15322549_SNP [dm3] 3R_19496827_SNP [dm6]	A	T	1.994e^-4	0.592	INTRON Dys
2R	11616994	2R_11616994_SNP [dm3] 2R_15729489_SNP [dm6]	A	T	2.000e^-4	0.592	INTRON CG30089
X	18737254	X_18737254_SNP [dm3] X_18843221_SNP [dm6]	T	C	2.002e^-4	0.592	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	8529738	2L_8529738_SNP [dm3] 2L_8529738_SNP [dm6]	A	C	2.002e^-4	0.592	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	343092	2L_343092_SNP [dm3] 2L_343092_SNP [dm6]	C	T	2.009e^-4	0.593	SYNONYMOUS_CODING Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10148861	2L_10148861_SNP [dm3] 2L_10148861_SNP [dm6]	A	G	2.026e^-4	0.596	INTRON CG44153 & 1 other
2L	5710602	2L_5710602_SNP [dm3] 2L_5710602_SNP [dm6]	G	A	2.027e^-4	0.596	INTRON CG7236
2L	9316299	2L_9316299_SNP [dm3] 2L_9316299_SNP [dm6]	G	A	2.029e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11865013	2R_11865013_SNP [dm3] 2R_15977508_SNP [dm6]	T	A	2.036e^-4	0.598	NON_SYNONYMOUS_CODING Strn-Mlck
2R	10544873	2R_10544873_SNP [dm3] 2R_14657368_SNP [dm6]	C	T	2.042e^-4	0.598	SYNONYMOUS_CODING Adgf-E
3L	12836892	3L_12836892_SNP [dm3] 3L_12843792_SNP [dm6]	A	G	2.052e^-4	0.6	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2R	7296387	2R_7296387_SNP [dm3] 2R_11408882_SNP [dm6]	G	A	2.053e^-4	0.6	SYNONYMOUS_CODING CG30026 DOWNSTREAM CG7759 & 1 other	TF binding site mE1_TFBS_bab1
3R	1445424	3R_1445424_SNP [dm3] 3R_5619702_SNP [dm6]	T	C	2.058e^-4	0.6	INTRON Spec2
2R	9664253	2R_9664253_SNP [dm3] 2R_13776748_SNP [dm6]	T	A	2.067e^-4	0.6	INTRON Cpr50Ca
3L	4643910	3L_4643910_SNP [dm3] 3L_4643910_SNP [dm6]	T	A	2.067e^-4	0.6	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15766840	3R_15766840_SNP [dm3] 3R_19941118_SNP [dm6]	C	T	2.074e^-4	0.6	INTRON Hs6st
2L	8800735	2L_8800735_SNP [dm3] 2L_8800735_SNP [dm6]	T	A	2.077e^-4	0.6	INTERGENIC
2L	9169901	2L_9169901_SNP [dm3] 2L_9169901_SNP [dm6]	C	T	2.082e^-4	0.6	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12569312	3L_12569312_SNP [dm3] 3L_12576212_SNP [dm6]	G	C	2.083e^-4	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	10378486	3L_10378486_SNP [dm3] 3L_10385386_SNP [dm6]	G	A	2.084e^-4	0.6	INTERGENIC
2L	1101655	2L_1101655_SNP [dm3] 2L_1101655_SNP [dm6]	T	C	2.087e^-4	0.6	INTRON CG4629
3L	12569315	3L_12569315_SNP [dm3] 3L_12576215_SNP [dm6]	T	G	2.087e^-4	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	8528677	2L_8528677_SNP [dm3] 2L_8528677_SNP [dm6]	A	T	2.089e^-4	0.6	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3R	16201878	3R_16201878_SNP [dm3] 3R_20376156_SNP [dm6]	T	C	2.094e^-4	0.6	INTERGENIC
2R	14221349	2R_14221349_SNP [dm3] 2R_18333844_SNP [dm6]	G	C	2.098e^-4	0.6	INTRON sbb	TF binding site BDTNP1_TFBS_dl
3R	15461945	3R_15461945_SNP [dm3] 3R_19636223_SNP [dm6]	C	T	2.102e^-4	0.6	SPLICE_SITE_REGION subdued DOWNSTREAM CG34138 INTRON subdued
2R	9203490	2R_9203490_SNP [dm3] 2R_13315985_SNP [dm6]	A	C	2.104e^-4	0.6	INTERGENIC
3R	8387019	3R_8387019_SNP [dm3] 3R_12561297_SNP [dm6]	C	T	2.105e^-4	0.6	UTR_5_PRIME Octbeta2R UPSTREAM Octbeta2R
3R	15461973	3R_15461973_SNP [dm3] 3R_19636251_SNP [dm6]	A	G	2.123e^-4	0.6	DOWNSTREAM CG34138 INTRON subdued
2L	8108941	2L_8108941_DEL [dm3] 2L_8108941_DEL [dm6]	AA	A	2.126e^-4	0.6	UTR_3_PRIME Bsg INTRON Bsg
X	12494343	X_12494343_SNP [dm3] X_12600310_SNP [dm6]	C	A	2.134e^-4	0.6	SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_dl
X	9741235	X_9741235_SNP [dm3] X_9847202_SNP [dm6]	A	T	2.139e^-4	0.6	INTRON CG32698
3L	14975116	3L_14975116_SNP [dm3] 3L_14982016_SNP [dm6]	T	A	2.142e^-4	0.6	SYNONYMOUS_CODING CG3349 UPSTREAM CG5114
X	11020997	X_11020997_SNP [dm3] X_11126964_SNP [dm6]	C	A	2.142e^-4	0.6	UTR_3_PRIME Gtp-bp DOWNSTREAM Rpt3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10131652	3R_10131652_SNP [dm3] 3R_14305930_SNP [dm6]	G	A	2.143e^-4	0.6	INTRON su_Hw_
X	18737176	X_18737176_SNP [dm3] X_18843143_SNP [dm6]	T	A	2.147e^-4	0.6	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	2043747	2L_2043747_SNP [dm3] 2L_2043747_SNP [dm6]	T	C	2.147e^-4	0.6	UTR_3_PRIME Su_dx_ DOWNSTREAM CR45298 & 1 other
2L	10730727	2L_10730727_SNP [dm3] 2L_10730727_SNP [dm6]	T	C	2.148e^-4	0.6	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8553404	3L_8553404_SNP [dm3] 3L_8560304_SNP [dm6]	C	T	2.150e^-4	0.6	START_GAINED rhea UTR_5_PRIME rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10131638	3R_10131638_SNP [dm3] 3R_14305916_SNP [dm6]	G	T	2.150e^-4	0.6	INTRON su_Hw_
2L	8800724	2L_8800724_SNP [dm3] 2L_8800724_SNP [dm6]	T	G	2.151e^-4	0.6	INTERGENIC
3R	23210332	3R_23210332_SNP [dm3] 3R_27384610_SNP [dm6]	T	C	2.152e^-4	0.6	INTRON side
2R	8688750	2R_8688750_SNP [dm3] 2R_12801245_SNP [dm6]	A	T	2.156e^-4	0.6	UTR_3_PRIME sca DOWNSTREAM sca
3L	10378368	3L_10378368_SNP [dm3] 3L_10385268_SNP [dm6]	G	A	2.156e^-4	0.6	INTERGENIC
3R	24166306	3R_24166306_SNP [dm3] 3R_28340584_SNP [dm6]	G	T	2.159e^-4	0.6	SYNONYMOUS_CODING Moca-cyp START_GAINED Moca-cyp UTR_5_PRIME Moca-cyp UPSTREAM Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10119234	3R_10119234_SNP [dm3] 3R_14293512_SNP [dm6]	T	G	2.168e^-4	0.601	INTRON CG12207
2L	3378511	2L_3378511_SNP [dm3] 2L_3378511_SNP [dm6]	T	G	2.175e^-4	0.601	UTR_3_PRIME Ptpa
2R	19839999	2R_19839999_SNP [dm3] 2R_23952476_SNP [dm6]	T	G	2.176e^-4	0.601	DOWNSTREAM CG3803 & 2 others INTERGENIC
2L	7984569	2L_7984569_SNP [dm3] 2L_7984569_SNP [dm6]	T	G	2.182e^-4	0.601	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10378474	3L_10378474_SNP [dm3] 3L_10385374_SNP [dm6]	T	C	2.182e^-4	0.601	INTERGENIC
2R	15108732	2R_15108732_SNP [dm3] 2R_19221227_SNP [dm6]	T	C	2.182e^-4	0.601	INTRON hppy
3R	23052532	3R_23052532_SNP [dm3] 3R_27226810_SNP [dm6]	T	G	2.188e^-4	0.601	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1556226	2L_1556226_SNP [dm3] 2L_1556226_SNP [dm6]	A	T	2.191e^-4	0.601	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21528551	3R_21528551_SNP [dm3] 3R_25702829_SNP [dm6]	C	A	2.204e^-4	0.601	INTRON LpR2
3L	10377570	3L_10377570_SNP [dm3] 3L_10384470_SNP [dm6]	G	A	2.204e^-4	0.601	INTERGENIC
2L	6775154	2L_6775154_SNP [dm3] 2L_6775154_SNP [dm6]	A	T	2.205e^-4	0.601	UPSTREAM CG17378 INTRON CG17378
3L	11595573	3L_11595573_SNP [dm3] 3L_11602473_SNP [dm6]	G	A	2.208e^-4	0.601	INTRON CG7368	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	12245783	3R_12245783_SNP [dm3] 3R_16420061_SNP [dm6]	G	C	2.211e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs
2L	1286457	2L_1286457_SNP [dm3] 2L_1286457_SNP [dm6]	C	G	2.212e^-4	0.601	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5199375	2L_5199375_SNP [dm3] 2L_5199375_SNP [dm6]	A	G	2.215e^-4	0.601	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
3R	10118204	3R_10118204_SNP [dm3] 3R_14292482_SNP [dm6]	A	G	2.226e^-4	0.601	INTRON CG12207
3R	10777124	3R_10777124_SNP [dm3] 3R_14951402_SNP [dm6]	C	T	2.228e^-4	0.601	INTERGENIC
2L	10860039	2L_10860039_SNP [dm3] 2L_10860039_SNP [dm6]	C	T	2.231e^-4	0.601	SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18737192	X_18737192_SNP [dm3] X_18843159_SNP [dm6]	T	G	2.234e^-4	0.601	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4692383	2R_4692383_SNP [dm3] 2R_8804878_SNP [dm6]	A	G	2.235e^-4	0.601	INTRON sns	TF binding site mE1_TFBS_chinmo
3R	11128765	3R_11128765_SNP [dm3] 3R_15303043_SNP [dm6]	T	C	2.237e^-4	0.601	INTRON Tm1
2L	16543938	2L_16543938_SNP [dm3] 2L_16543938_SNP [dm6]	A	G	2.237e^-4	0.601	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1245050	2L_1245050_SNP [dm3] 2L_1245050_SNP [dm6]	G	A	2.238e^-4	0.601	INTERGENIC
3L	8287463	3L_8287463_SNP [dm3] 3L_8294363_SNP [dm6]	C	A	2.244e^-4	0.601	INTRON CG7201
3R	10803630	3R_10803630_SNP [dm3] 3R_14977908_SNP [dm6]	T	G	2.246e^-4	0.601	INTERGENIC
X	18737015	X_18737015_SNP [dm3] X_18842982_SNP [dm6]	A	T	2.253e^-4	0.601	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	14315378	2L_14315378_SNP [dm3] 2L_14315378_SNP [dm6]	C	T	2.254e^-4	0.601	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11205537	3R_11205537_SNP [dm3] 3R_15379815_SNP [dm6]	G	A	2.258e^-4	0.601	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	17166513	X_17166513_SNP [dm3] X_17272480_SNP [dm6]	G	A	2.263e^-4	0.601	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16374084	3R_16374084_SNP [dm3] 3R_20548362_SNP [dm6]	T	C	2.267e^-4	0.601	INTRON Stat92E	TF binding site mE1_TFBS_cad
3R	15462935	3R_15462935_SNP [dm3] 3R_19637213_SNP [dm6]	G	A	2.276e^-4	0.601	SYNONYMOUS_CODING subdued
2R	20193571	2R_20193571_SNP [dm3] 2R_24306048_SNP [dm6]	T	G	2.277e^-4	0.601	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	11021007	X_11021007_SNP [dm3] X_11126974_SNP [dm6]	C	G	2.281e^-4	0.601	UTR_3_PRIME Gtp-bp DOWNSTREAM Rpt3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23061204	3R_23061204_SNP [dm3] 3R_27235482_SNP [dm6]	T	C	2.281e^-4	0.601	INTRON CG31064 & 1 other
2L	1284531	2L_1284531_SNP [dm3] 2L_1284531_SNP [dm6]	C	T	2.287e^-4	0.601	INTRON robo3
X	5066909	X_5066909_INS [dm3] X_5172876_INS [dm6]	T	TT	2.291e^-4	0.601	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17062834	3R_17062834_SNP [dm3] 3R_21237112_SNP [dm6]	A	G	2.291e^-4	0.601	UTR_5_PRIME e
3R	24869391	3R_24869391_SNP [dm3] 3R_29043669_SNP [dm6]	T	A	2.295e^-4	0.601	INTRON Pkc98E
2L	1480027	2L_1480027_SNP [dm3] 2L_1480027_SNP [dm6]	T	A	2.302e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22989197	3R_22989197_SNP [dm3] 3R_27163475_SNP [dm6]	G	A	2.307e^-4	0.601	DOWNSTREAM CG5909 INTRON ppk31
2R	12519142	2R_12519142_SNP [dm3] 2R_16631637_SNP [dm6]	A	G	2.307e^-4	0.601	SYNONYMOUS_CODING Alk
2L	13040021	2L_13040021_SNP [dm3] 2L_13040021_SNP [dm6]	A	G	2.316e^-4	0.601	INTRON CG9932
X	2577054	X_2577054_SNP [dm3] X_2683021_SNP [dm6]	T	C	2.317e^-4	0.601	UPSTREAM CG2652 EXON CR44470
X	19231400	X_19231400_SNP [dm3] X_19337367_SNP [dm6]	C	A	2.317e^-4	0.601	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
3L	16819414	3L_16819414_SNP [dm3] 3L_16826314_SNP [dm6]	G	A	2.317e^-4	0.601	INTRON CG13024
3R	24538908	3R_24538908_SNP [dm3] 3R_28713186_SNP [dm6]	G	C	2.318e^-4	0.601	INTRON htt
3R	9791260	3R_9791260_SNP [dm3] 3R_13965538_SNP [dm6]	T	C	2.325e^-4	0.601	SYNONYMOUS_CODING Orc2
2R	17691960	2R_17691960_SNP [dm3] 2R_21804455_SNP [dm6]	T	C	2.326e^-4	0.601	DOWNSTREAM CR9284 INTERGENIC
X	18737156	X_18737156_SNP [dm3] X_18843123_SNP [dm6]	A	T	2.327e^-4	0.601	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
X	4573826	X_4573826_SNP [dm3] X_4679793_SNP [dm6]	C	A	2.329e^-4	0.601	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8740716	3L_8740716_SNP [dm3] 3L_8747616_SNP [dm6]	C	T	2.331e^-4	0.601	INTERGENIC
3L	10378434	3L_10378434_SNP [dm3] 3L_10385334_SNP [dm6]	G	A	2.333e^-4	0.601	INTERGENIC
X	18737017	X_18737017_SNP [dm3] X_18842984_SNP [dm6]	A	T	2.336e^-4	0.601	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
3L	14399611	3L_14399611_SNP [dm3] 3L_14406511_SNP [dm6]	A	T	2.336e^-4	0.601	NON_SYNONYMOUS_CODING stwl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16758087	3R_16758087_SNP [dm3] 3R_20932365_SNP [dm6]	T	G	2.353e^-4	0.603	INTRON CG31191
2L	14918126	2L_14918126_SNP [dm3] 2L_14918126_SNP [dm6]	G	T	2.360e^-4	0.603	INTRON CG42313
3R	18252651	3R_18252651_SNP [dm3] 3R_22426929_SNP [dm6]	G	C	2.369e^-4	0.603	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5607723	2R_5607723_SNP [dm3] 2R_9720218_SNP [dm6]	A	G	2.371e^-4	0.603	INTRON sqa
2L	8490794	2L_8490794_SNP [dm3] 2L_8490794_SNP [dm6]	A	G	2.374e^-4	0.603	UTR_5_PRIME CG43400 DOWNSTREAM CG13088
2R	10541763	2R_10541763_SNP [dm3] 2R_14654258_SNP [dm6]	G	C	2.375e^-4	0.603	INTERGENIC
3L	5946368	3L_5946368_SNP [dm3] 3L_5953268_SNP [dm6]	C	G	2.376e^-4	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10772618	X_10772618_SNP [dm3] X_10878585_SNP [dm6]	T	C	2.379e^-4	0.603	SYNONYMOUS_CODING Ork1 UPSTREAM CG1637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1575452	2L_1575452_SNP [dm3] 2L_1575452_SNP [dm6]	A	G	2.381e^-4	0.603	INTRON haf
2R	18189940	2R_18189940_SNP [dm3] 2R_22302435_SNP [dm6]	T	C	2.385e^-4	0.603	INTRON wdp	TF binding site BDTNP1_TFBS_da
2R	11905915	2R_11905915_SNP [dm3] 2R_16018410_SNP [dm6]	G	T	2.389e^-4	0.603	INTRON CG8399
3L	8725848	3L_8725848_SNP [dm3] 3L_8732748_SNP [dm6]	T	G	2.390e^-4	0.603	DOWNSTREAM Prm & 1 other INTERGENIC
2R	18332697	2R_18332697_SNP [dm3] 2R_22445192_SNP [dm6]	C	T	2.400e^-4	0.603	INTERGENIC
3R	26916866	3R_26916866_SNP [dm3] 3R_31091144_SNP [dm6]	G	T	2.404e^-4	0.603	UTR_3_PRIME CG11317
X	11072212	X_11072212_SNP [dm3] X_11178179_SNP [dm6]	C	A	2.407e^-4	0.603	INTERGENIC
3L	11912960	3L_11912960_SNP [dm3] 3L_11919860_SNP [dm6]	A	G	2.408e^-4	0.603	INTRON CG44837
2L	8808674	2L_8808674_SNP [dm3] 2L_8808674_SNP [dm6]	G	A	2.413e^-4	0.603	INTERGENIC
2L	1579052	2L_1579052_SNP [dm3] 2L_1579052_SNP [dm6]	G	T	2.416e^-4	0.603	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	504950	2L_504950_SNP [dm3] 2L_504950_SNP [dm6]	G	A	2.416e^-4	0.603	INTRON ush
3R	24990935	3R_24990935_SNP [dm3] 3R_29165213_SNP [dm6]	A	G	2.418e^-4	0.603	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3L	16350290	3L_16350290_SNP [dm3] 3L_16357190_SNP [dm6]	C	T	2.421e^-4	0.603	UPSTREAM CG45057 INTRON CG45057
2L	643521	2L_643521_SNP [dm3] 2L_643521_SNP [dm6]	G	A	2.427e^-4	0.603	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_inv
3L	601085	3L_601085_SNP [dm3] 3L_601085_SNP [dm6]	T	A	2.427e^-4	0.603	INTRON CG13893	TF binding site mE1_TFBS_inv
2L	760097	2L_760097_SNP [dm3] 2L_760097_SNP [dm6]	T	C	2.430e^-4	0.603	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
X	21890761	X_21890761_SNP [dm3] X_22488925_SNP [dm6]	T	C	2.430e^-4	0.603	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
2L	3378521	2L_3378521_SNP [dm3] 2L_3378521_SNP [dm6]	G	A	2.434e^-4	0.603	UTR_3_PRIME Ptpa
2R	18184246	2R_18184246_SNP [dm3] 2R_22296741_SNP [dm6]	T	C	2.435e^-4	0.603	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
3R	1484433	3R_1484433_SNP [dm3] 3R_5658711_SNP [dm6]	C	T	2.437e^-4	0.603	SPLICE_SITE_REGION CG2182 UPSTREAM CR44093 INTRON CG2182	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10029875	2R_10029875_SNP [dm3] 2R_14142370_SNP [dm6]	T	A	2.438e^-4	0.603	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2L	10687986	2L_10687986_SNP [dm3] 2L_10687986_SNP [dm6]	C	G	2.440e^-4	0.603	UPSTREAM CG7296 DOWNSTREAM CG7294 INTERGENIC
3R	10415444	3R_10415444_SNP [dm3] 3R_14589722_SNP [dm6]	T	G	2.449e^-4	0.604	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	2.452e^-4	0.604	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	14272879	2L_14272879_SNP [dm3] 2L_14272879_SNP [dm6]	A	T	2.463e^-4	0.606	DOWNSTREAM CR44729 INTRON wb	TF binding site mE1_TFBS_HSA
2L	3892707	2L_3892707_SNP [dm3] 2L_3892707_SNP [dm6]	C	T	2.467e^-4	0.606	INTRON capu
3R	13390798	3R_13390798_SNP [dm3] 3R_17565076_SNP [dm6]	A	T	2.476e^-4	0.608	INTRON Hmx
X	12322950	X_12322950_SNP [dm3] X_12428917_SNP [dm6]	T	C	2.481e^-4	0.608	INTERGENIC
3L	16350800	3L_16350800_SNP [dm3] 3L_16357700_SNP [dm6]	A	G	2.484e^-4	0.608	INTRON CG45057
2R	6111997	2R_6111997_SNP [dm3] 2R_10224492_SNP [dm6]	T	G	2.504e^-4	0.612	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	890184	2L_890184_SNP [dm3] 2L_890184_SNP [dm6]	C	T	2.519e^-4	0.614	INTERGENIC
3R	20396666	3R_20396666_SNP [dm3] 3R_24570944_SNP [dm6]	T	A	2.519e^-4	0.614	INTRON CG13624
2L	1480246	2L_1480246_SNP [dm3] 2L_1480246_SNP [dm6]	G	A	2.524e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18737270	X_18737270_SNP [dm3] X_18843237_SNP [dm6]	G	A	2.525e^-4	0.614	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	5662370	2L_5662370_SNP [dm3] 2L_5662370_SNP [dm6]	A	G	2.528e^-4	0.614	UPSTREAM Hsp60C & 1 other INTERGENIC
3L	13112945	3L_13112945_SNP [dm3] 3L_13119845_SNP [dm6]	A	T	2.533e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	665745	2L_665745_SNP [dm3] 2L_665745_SNP [dm6]	G	T	2.543e^-4	0.615	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3378508	2L_3378508_SNP [dm3] 2L_3378508_SNP [dm6]	A	T	2.544e^-4	0.615	UTR_3_PRIME Ptpa
X	18737245	X_18737245_INS [dm3] X_18843212_INS [dm6]	A	TCTC	2.549e^-4	0.615	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	20914880	2L_20914880_SNP [dm3] 2L_20914880_SNP [dm6]	G	T	2.552e^-4	0.615	INTRON sky & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA transposable element FlyBase
3R	11006294	3R_11006294_SNP [dm3] 3R_15180572_SNP [dm6]	T	G	2.554e^-4	0.615	UPSTREAM Mf INTRON Gyc88E & 1 other
X	19735457	X_19735457_SNP [dm3] X_19841424_SNP [dm6]	G	T	2.561e^-4	0.615	INTRON pico	TF binding site BDTNP1_TFBS_da
2R	8928517	2R_8928517_SNP [dm3] 2R_13041012_SNP [dm6]	C	T	2.567e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4997466	3R_4997466_SNP [dm3] 3R_9171744_SNP [dm6]	A	T	2.571e^-4	0.615	INTRON pum
3L	3098465	3L_3098465_SNP [dm3] 3L_3098465_SNP [dm6]	T	C	2.575e^-4	0.615	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3R	10131637	3R_10131637_SNP [dm3] 3R_14305915_SNP [dm6]	C	T	2.577e^-4	0.615	INTRON su_Hw_
3L	5423707	3L_5423707_SNP [dm3] 3L_5430607_SNP [dm6]	C	T	2.578e^-4	0.615	INTRON CG34391
3R	10459194	3R_10459194_SNP [dm3] 3R_14633472_SNP [dm6]	G	A	2.580e^-4	0.615	INTRON CG7886 & 1 other
3R	13783764	3R_13783764_SNP [dm3] 3R_17958042_SNP [dm6]	G	A	2.581e^-4	0.615	INTRON cpo
3L	10378204	3L_10378204_SNP [dm3] 3L_10385104_SNP [dm6]	A	G	2.587e^-4	0.615	INTERGENIC
2L	1480028	2L_1480028_SNP [dm3] 2L_1480028_SNP [dm6]	T	C	2.588e^-4	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13647702	3R_13647702_SNP [dm3] 3R_17821980_SNP [dm6]	G	T	2.591e^-4	0.615	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	19040518	3R_19040518_SNP [dm3] 3R_23214796_SNP [dm6]	T	C	2.595e^-4	0.615	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl
X	18737250	X_18737250_INS [dm3] X_18843217_INS [dm6]	A	ATCTGTATGCTG...	2.599e^-4	0.615	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	17372408	2R_17372408_SNP [dm3] 2R_21484903_SNP [dm6]	A	G	2.603e^-4	0.615	SYNONYMOUS_CODING Sara
2R	7691733	2R_7691733_SNP [dm3] 2R_11804228_SNP [dm6]	G	C	2.605e^-4	0.615	INTRON ths	TF binding site mE1_TFBS_cad
X	12837803	X_12837803_SNP [dm3] X_12943770_SNP [dm6]	T	C	2.608e^-4	0.615	INTRON fne
X	21123349	X_21123349_SNP [dm3] X_21252322_SNP [dm6]	A	T	2.611e^-4	0.615	INTRON CG32521
2L	14282894	2L_14282894_SNP [dm3] 2L_14282894_SNP [dm6]	G	C	2.611e^-4	0.615	INTRON wb	TF binding site BDTNP1_TFBS_da
2R	9432551	2R_9432551_SNP [dm3] 2R_13545046_SNP [dm6]	C	G	2.615e^-4	0.616	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	12728181	2L_12728181_SNP [dm3] 2L_12728181_SNP [dm6]	C	T	2.619e^-4	0.616	SYNONYMOUS_CODING MRP INTRON MRP
3L	12195874	3L_12195874_DEL [dm3] 3L_12202774_DEL [dm6]	AGCTA	A	2.628e^-4	0.617	INTRON Adk1
X	16833386	X_16833386_SNP [dm3] X_16939353_SNP [dm6]	A	G	2.641e^-4	0.619	SYNONYMOUS_CODING wus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11595588	3L_11595588_SNP [dm3] 3L_11602488_SNP [dm6]	T	G	2.657e^-4	0.622	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	10152914	3R_10152914_SNP [dm3] 3R_14327192_SNP [dm6]	G	A	2.661e^-4	0.622	UPSTREAM Afti & 1 other INTRON CG3321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13501511	3R_13501511_SNP [dm3] 3R_17675789_SNP [dm6]	A	T	2.668e^-4	0.623	INTRON alt
2L	334260	2L_334260_SNP [dm3] 2L_334260_SNP [dm6]	A	G	2.675e^-4	0.624	SPLICE_SITE_REGION Plc21C INTRON Plc21C	TF binding site mE1_TFBS_inv
2L	9166649	2L_9166649_SNP [dm3] 2L_9166649_SNP [dm6]	T	C	2.680e^-4	0.625	UPSTREAM tai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	18475928	3L_18475928_SNP [dm3] 3L_18482828_SNP [dm6]	G	A	2.687e^-4	0.625	INTERGENIC
2L	12729244	2L_12729244_SNP [dm3] 2L_12729244_SNP [dm6]	G	T	2.693e^-4	0.626	NON_SYNONYMOUS_CODING MRP INTRON MRP
2L	1245028	2L_1245028_SNP [dm3] 2L_1245028_SNP [dm6]	G	A	2.696e^-4	0.626	INTERGENIC
3R	13390784	3R_13390784_SNP [dm3] 3R_17565062_SNP [dm6]	T	G	2.705e^-4	0.626	INTRON Hmx
3R	22289363	3R_22289363_SNP [dm3] 3R_26463641_SNP [dm6]	T	A	2.716e^-4	0.626	INTRON CG5455
3R	13854944	3R_13854944_INS [dm3] 3R_18029222_INS [dm6]	G	GG	2.719e^-4	0.626	INTERGENIC
2L	12724654	2L_12724654_SNP [dm3] 2L_12724654_SNP [dm6]	C	T	2.725e^-4	0.626	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1993153	3L_1993153_SNP [dm3] 3L_1993153_SNP [dm6]	C	T	2.732e^-4	0.626	INTERGENIC
2R	17335850	2R_17335850_SNP [dm3] 2R_21448345_SNP [dm6]	T	G	2.736e^-4	0.626	INTRON Sdc
3R	14178158	3R_14178158_SNP [dm3] 3R_18352436_SNP [dm6]	C	T	2.742e^-4	0.626	INTRON CG15803
X	21890726	X_21890726_INS [dm3] X_22488890_INS [dm6]	G	TTCGTTTGCCCAC...	2.743e^-4	0.626	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
2R	11882325	2R_11882325_SNP [dm3] 2R_15994820_SNP [dm6]	T	G	2.744e^-4	0.626	INTRON ATPCL
3R	19040545	3R_19040545_SNP [dm3] 3R_23214823_SNP [dm6]	A	C	2.745e^-4	0.626	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl
2L	8525339	2L_8525339_SNP [dm3] 2L_8525339_SNP [dm6]	G	A	2.747e^-4	0.626	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
3R	18198577	3R_18198577_SNP [dm3] 3R_22372855_SNP [dm6]	G	T	2.750e^-4	0.626	UTR_5_PRIME CG7069 DOWNSTREAM PyK
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	2.751e^-4	0.626	INTRON Dh31-R
X	18356003	X_18356003_SNP [dm3] X_18461970_SNP [dm6]	G	T	2.751e^-4	0.626	INTRON CG32547 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15584465	3R_15584465_SNP [dm3] 3R_19758743_SNP [dm6]	C	G	2.753e^-4	0.626	INTRON GluClalpha
X	16083292	X_16083292_SNP [dm3] X_16189259_SNP [dm6]	G	A	2.756e^-4	0.626	INTERGENIC
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	2.757e^-4	0.626	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3R	25511162	3R_25511162_SNP [dm3] 3R_29685440_SNP [dm6]	T	C	2.758e^-4	0.626	SYNONYMOUS_CODING Gycalpha99B DOWNSTREAM Obp99c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12135665	2R_12135665_SNP [dm3] 2R_16248160_SNP [dm6]	G	C	2.761e^-4	0.626	INTRON CngA
3L	16580561	3L_16580561_SNP [dm3] 3L_16587461_SNP [dm6]	C	T	2.765e^-4	0.626	SYNONYMOUS_CODING CG32163 UPSTREAM Syx8 INTRON CG32163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12875252	2R_12875252_SNP [dm3] 2R_16987747_SNP [dm6]	C	T	2.767e^-4	0.626	INTRON Cbp53E	TF binding site mE1_TFBS_sbb
2L	1702869	2L_1702869_SNP [dm3] 2L_1702869_SNP [dm6]	T	A	2.771e^-4	0.626	UTR_3_PRIME chinmo
2R	20365240	2R_20365240_SNP [dm3] 2R_24477717_SNP [dm6]	T	A	2.774e^-4	0.626	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	24477979	3R_24477979_SNP [dm3] 3R_28652257_SNP [dm6]	G	T	2.777e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12539996	3L_12539996_SNP [dm3] 3L_12546896_SNP [dm6]	C	T	2.787e^-4	0.626	INTRON sowah
X	16083291	X_16083291_SNP [dm3] X_16189258_SNP [dm6]	T	G	2.789e^-4	0.626	INTERGENIC
3R	15457047	3R_15457047_SNP [dm3] 3R_19631325_SNP [dm6]	T	A	2.792e^-4	0.626	INTRON CG6231
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	2.792e^-4	0.626	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2L	21259953	2L_21259953_SNP [dm3] 2L_21259953_SNP [dm6]	A	G	2.794e^-4	0.626	DOWNSTREAM Hr39 INTERGENIC	transposable element FlyBase
2R	4391491	2R_4391491_SNP [dm3] 2R_8503986_SNP [dm6]	T	A	2.795e^-4	0.626	INTRON mtt
2R	12806058	2R_12806058_SNP [dm3] 2R_16918553_SNP [dm6]	C	A	2.804e^-4	0.626	INTERGENIC
X	2622994	X_2622994_SNP [dm3] X_2728961_SNP [dm6]	T	A	2.805e^-4	0.626	INTRON dwg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27263527	3R_27263527_DEL [dm3] 3R_31437805_DEL [dm6]	ACACAGACAGA...	A	2.810e^-4	0.626	INTRON Gprk2
3R	13765321	3R_13765321_SNP [dm3] 3R_17939599_SNP [dm6]	C	G	2.814e^-4	0.626	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18158174	3L_18158174_SNP [dm3] 3L_18165074_SNP [dm6]	A	C	2.823e^-4	0.626	INTERGENIC
3R	16702204	3R_16702204_SNP [dm3] 3R_20876482_SNP [dm6]	T	C	2.826e^-4	0.626	INTERGENIC
3L	12391407	3L_12391407_SNP [dm3] 3L_12398307_SNP [dm6]	T	C	2.828e^-4	0.626	SYNONYMOUS_CODING CG32104
X	18737260	X_18737260_SNP [dm3] X_18843227_SNP [dm6]	A	C	2.829e^-4	0.626	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	6775162	2L_6775162_SNP [dm3] 2L_6775162_SNP [dm6]	T	G	2.831e^-4	0.626	UPSTREAM CG17378 INTRON CG17378
3R	10119599	3R_10119599_INS [dm3] 3R_14293877_INS [dm6]	C	CTGTTACTCTCTAC...	2.837e^-4	0.626	INTRON CG12207
3R	10119602	3R_10119602_SNP [dm3] 3R_14293880_SNP [dm6]	T	A	2.837e^-4	0.626	INTRON CG12207
3L	6333356	3L_6333356_SNP [dm3] 3L_6340256_SNP [dm6]	A	C	2.839e^-4	0.626	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
X	21890117	X_21890117_SNP [dm3] X_22488281_SNP [dm6]	A	T	2.844e^-4	0.627	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9175601	2L_9175601_SNP [dm3] 2L_9175601_SNP [dm6]	G	A	2.849e^-4	0.627	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_dl
3R	13819010	3R_13819010_SNP [dm3] 3R_17993288_SNP [dm6]	G	A	2.854e^-4	0.627	INTRON cpo	TF binding site mE1_TFBS_inv
3L	10377541	3L_10377541_SNP [dm3] 3L_10384441_SNP [dm6]	G	T	2.854e^-4	0.627	INTERGENIC
2L	12555196	2L_12555196_SNP [dm3] 2L_12555196_SNP [dm6]	A	G	2.858e^-4	0.627	INTERGENIC
2L	8808544	2L_8808544_SNP [dm3] 2L_8808544_SNP [dm6]	A	C	2.862e^-4	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19600078	2R_19600078_SNP [dm3] 2R_23712555_SNP [dm6]	A	C	2.863e^-4	0.627	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8980523	2R_8980523_SNP [dm3] 2R_13093018_SNP [dm6]	T	G	2.875e^-4	0.628	INTERGENIC
2R	13233848	2R_13233848_SNP [dm3] 2R_17346343_SNP [dm6]	G	A	2.876e^-4	0.628	INTRON mbl
2L	10668901	2L_10668901_SNP [dm3] 2L_10668901_SNP [dm6]	C	A	2.883e^-4	0.628	SYNONYMOUS_CODING CG31871
2L	2419947	2L_2419947_SNP [dm3] 2L_2419947_SNP [dm6]	T	C	2.890e^-4	0.628	START_GAINED CG34447 UTR_5_PRIME CG34447 UPSTREAM CG34447 & 1 other
X	5333041	X_5333041_SNP [dm3] X_5439008_SNP [dm6]	T	A	2.895e^-4	0.628	INTERGENIC
3R	26477110	3R_26477110_SNP [dm3] 3R_30651388_SNP [dm6]	T	C	2.896e^-4	0.628	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10659010	2L_10659010_SNP [dm3] 2L_10659010_SNP [dm6]	A	G	2.898e^-4	0.628	DOWNSTREAM CR45692 & 1 other INTERGENIC
3R	25909567	3R_25909567_SNP [dm3] 3R_30083845_SNP [dm6]	A	C	2.898e^-4	0.628	INTRON sima	TF binding site mE1_TFBS_Trl
2L	16232878	2L_16232878_SNP [dm3] 2L_16232878_SNP [dm6]	G	A	2.905e^-4	0.629	INTRON CG42817
3R	15981975	3R_15981975_SNP [dm3] 3R_20156253_SNP [dm6]	T	G	2.915e^-4	0.631	INTERGENIC
3R	18229505	3R_18229505_SNP [dm3] 3R_22403783_SNP [dm6]	T	A	2.929e^-4	0.631	INTRON CG13856
X	16833394	X_16833394_SNP [dm3] X_16939361_SNP [dm6]	A	G	2.931e^-4	0.631	SYNONYMOUS_CODING wus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8529275	2L_8529275_SNP [dm3] 2L_8529275_SNP [dm6]	A	G	2.934e^-4	0.631	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other	TF binding site BDTNP1_TFBS_dl
X	16083233	X_16083233_SNP [dm3] X_16189200_SNP [dm6]	G	T	2.935e^-4	0.631	INTERGENIC
2L	4047602	2L_4047602_SNP [dm3] 2L_4047602_SNP [dm6]	A	C	2.939e^-4	0.631	INTRON ed
3R	11008848	3R_11008848_SNP [dm3] 3R_15183126_SNP [dm6]	A	T	2.946e^-4	0.631	INTRON Gyc88E
2R	14219961	2R_14219961_SNP [dm3] 2R_18332456_SNP [dm6]	T	C	2.957e^-4	0.631	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	1255669	2L_1255669_SNP [dm3] 2L_1255669_SNP [dm6]	T	A	2.960e^-4	0.631	UPSTREAM robo3 INTERGENIC
2L	749567	2L_749567_DEL [dm3] 2L_749567_DEL [dm6]	TGCCAACTTCATT...	T	2.961e^-4	0.631	UPSTREAM GABA-B-R3 INTERGENIC
2R	10552688	2R_10552688_SNP [dm3] 2R_14665183_SNP [dm6]	G	A	2.973e^-4	0.631	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
X	12837940	X_12837940_SNP [dm3] X_12943907_SNP [dm6]	A	G	2.977e^-4	0.631	INTRON fne
X	21890751	X_21890751_SNP [dm3] X_22488915_SNP [dm6]	G	A	2.980e^-4	0.631	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3R	11304205	3R_11304205_SNP [dm3] 3R_15478483_SNP [dm6]	C	A	2.982e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8110930	2L_8110930_SNP [dm3] 2L_8110930_SNP [dm6]	C	T	2.986e^-4	0.631	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
3R	24907506	3R_24907506_SNP [dm3] 3R_29081784_SNP [dm6]	T	G	2.990e^-4	0.631	INTRON CG11873	TF binding site mE1_TFBS_inv
3L	8442664	3L_8442664_SNP [dm3] 3L_8449564_SNP [dm6]	G	A	2.995e^-4	0.631	UPSTREAM Gug & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14429931	3L_14429931_SNP [dm3] 3L_14436831_SNP [dm6]	A	G	2.995e^-4	0.631	INTRON bbg
X	4832505	X_4832505_SNP [dm3] X_4938472_SNP [dm6]	A	G	2.998e^-4	0.631	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16429550	3R_16429550_SNP [dm3] 3R_20603828_SNP [dm6]	T	G	2.999e^-4	0.631	DOWNSTREAM tRNA:CR31506 INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12493539	X_12493539_SNP [dm3] X_12599506_SNP [dm6]	C	T	3.005e^-4	0.631	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	5342433	3L_5342433_SNP [dm3] 3L_5349333_SNP [dm6]	T	A	3.006e^-4	0.631	INTRON lama
2R	5284194	2R_5284194_SNP [dm3] 2R_9396689_SNP [dm6]	A	G	3.008e^-4	0.631	SYNONYMOUS_CODING CG8801 UPSTREAM CG8800	TF binding site mE1_TFBS_cad
2L	10730241	2L_10730241_SNP [dm3] 2L_10730241_SNP [dm6]	C	T	3.010e^-4	0.631	UTR_3_PRIME CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	3.010e^-4	0.631	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	9524236	2R_9524236_SNP [dm3] 2R_13636731_SNP [dm6]	G	A	3.012e^-4	0.631	INTRON fas
3R	21844990	3R_21844990_SNP [dm3] 3R_26019268_SNP [dm6]	T	G	3.013e^-4	0.631	EXON CR43643	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10542111	2R_10542111_SNP [dm3] 2R_14654606_SNP [dm6]	T	G	3.023e^-4	0.631	INTERGENIC
3L	4148493	3L_4148493_SNP [dm3] 3L_4148493_SNP [dm6]	G	A	3.028e^-4	0.631	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9921547	3R_9921547_SNP [dm3] 3R_14095825_SNP [dm6]	G	A	3.037e^-4	0.631	INTRON CCHa1
2L	749562	2L_749562_SNP [dm3] 2L_749562_SNP [dm6]	G	A	3.037e^-4	0.631	UPSTREAM GABA-B-R3 INTERGENIC
2R	9203499	2R_9203499_SNP [dm3] 2R_13315994_SNP [dm6]	T	G	3.041e^-4	0.631	INTERGENIC
3L	5423695	3L_5423695_SNP [dm3] 3L_5430595_SNP [dm6]	T	G	3.044e^-4	0.631	INTRON CG34391
3R	13868883	3R_13868883_SNP [dm3] 3R_18043161_SNP [dm6]	C	A	3.044e^-4	0.631	INTERGENIC
2R	13172734	2R_13172734_SNP [dm3] 2R_17285229_SNP [dm6]	C	G	3.046e^-4	0.631	INTRON mbl
2L	8525341	2L_8525341_SNP [dm3] 2L_8525341_SNP [dm6]	C	A	3.048e^-4	0.631	UTR_3_PRIME Acer & 2 others DOWNSTREAM lmgA & 2 others
2R	4457497	2R_4457497_SNP [dm3] 2R_8569992_SNP [dm6]	A	G	3.050e^-4	0.631	UPSTREAM Cyp6a13 EXON Cyp6a15Psi
3R	22289368	3R_22289368_SNP [dm3] 3R_26463646_SNP [dm6]	C	T	3.057e^-4	0.631	INTRON CG5455
X	17367131	X_17367131_SNP [dm3] X_17473098_SNP [dm6]	T	A	3.058e^-4	0.631	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	17505590	2L_17505590_SNP [dm3] 2L_17505590_SNP [dm6]	T	C	3.059e^-4	0.631	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22284032	3R_22284032_SNP [dm3] 3R_26458310_SNP [dm6]	G	A	3.060e^-4	0.631	UTR_5_PRIME CG14238
2R	12392489	2R_12392489_SNP [dm3] 2R_16504984_SNP [dm6]	G	T	3.062e^-4	0.631	INTRON Sema-2a
X	19651584	X_19651584_SNP [dm3] X_19757551_SNP [dm6]	T	C	3.064e^-4	0.631	INTRON Pmp70	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6699929	2L_6699929_SNP [dm3] 2L_6699929_SNP [dm6]	G	A	3.067e^-4	0.631	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3439679	X_3439679_SNP [dm3] X_3545646_SNP [dm6]	G	A	3.070e^-4	0.631	DOWNSTREAM CR34335 INTRON CG32791
3R	11698058	3R_11698058_SNP [dm3] 3R_15872336_SNP [dm6]	T	C	3.073e^-4	0.631	INTRON CG31183
3L	10723070	3L_10723070_SNP [dm3] 3L_10729970_SNP [dm6]	A	G	3.076e^-4	0.631	INTERGENIC
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	3.077e^-4	0.631	INTRON fne
2L	9378788	2L_9378788_SNP [dm3] 2L_9378788_SNP [dm6]	A	C	3.078e^-4	0.631	INTRON Shawl
2L	760064	2L_760064_SNP [dm3] 2L_760064_SNP [dm6]	G	C	3.083e^-4	0.631	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2R	20191685	2R_20191685_SNP [dm3] 2R_24304162_SNP [dm6]	C	T	3.102e^-4	0.634	INTERGENIC	regulatory region REDfly_CRMs
X	11072605	X_11072605_SNP [dm3] X_11178572_SNP [dm6]	T	A	3.105e^-4	0.634	INTERGENIC
2R	15784147	2R_15784147_SNP [dm3] 2R_19896642_SNP [dm6]	T	A	3.105e^-4	0.634	DOWNSTREAM CR44572 INTERGENIC
2L	17439498	2L_17439498_SNP [dm3] 2L_17439498_SNP [dm6]	C	T	3.116e^-4	0.634	UTR_3_PRIME dl INTRON dl
3L	10948604	3L_10948604_SNP [dm3] 3L_10955504_SNP [dm6]	C	T	3.119e^-4	0.634	INTERGENIC
X	6905354	X_6905354_INS [dm3] X_7011321_INS [dm6]	C	CTC	3.120e^-4	0.634	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	19112790	X_19112790_SNP [dm3] X_19218757_SNP [dm6]	G	C	3.126e^-4	0.634	INTERGENIC
X	19112795	X_19112795_SNP [dm3] X_19218762_SNP [dm6]	T	G	3.126e^-4	0.634	INTERGENIC
2L	19573282	2L_19573282_SNP [dm3] 2L_19573282_SNP [dm6]	C	T	3.134e^-4	0.634	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	22289382	3R_22289382_SNP [dm3] 3R_26463660_SNP [dm6]	T	A	3.135e^-4	0.634	INTRON CG5455
X	8208652	X_8208652_SNP [dm3] X_8314619_SNP [dm6]	G	C	3.140e^-4	0.634	INTRON nAChRalpha3
2R	20365372	2R_20365372_SNP [dm3] 2R_24477849_SNP [dm6]	T	C	3.142e^-4	0.634	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1454388	3L_1454388_SNP [dm3] 3L_1454388_SNP [dm6]	G	C	3.142e^-4	0.634	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	25909564	3R_25909564_SNP [dm3] 3R_30083842_SNP [dm6]	A	G	3.146e^-4	0.634	INTRON sima	TF binding site mE1_TFBS_Trl
2L	16544566	2L_16544566_SNP [dm3] 2L_16544566_SNP [dm6]	A	C	3.153e^-4	0.634	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	19737705	X_19737705_SNP [dm3] X_19843672_SNP [dm6]	T	C	3.165e^-4	0.634	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	3.169e^-4	0.634	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11988507	3R_11988507_SNP [dm3] 3R_16162785_SNP [dm6]	C	T	3.170e^-4	0.634	INTRON CG6006
3L	8721223	3L_8721223_SNP [dm3] 3L_8728123_SNP [dm6]	C	A	3.170e^-4	0.634	UPSTREAM Cp15 DOWNSTREAM Cp18 INTERGENIC
X	12717525	X_12717525_SNP [dm3] X_12823492_SNP [dm6]	C	T	3.170e^-4	0.634	INTRON Pde9
3L	12540333	3L_12540333_SNP [dm3] 3L_12547233_SNP [dm6]	T	G	3.175e^-4	0.634	INTRON sowah
2L	14276358	2L_14276358_SNP [dm3] 2L_14276358_SNP [dm6]	A	T	3.175e^-4	0.634	UPSTREAM CG32971 INTRON wb & 1 other
3R	13502837	3R_13502837_SNP [dm3] 3R_17677115_SNP [dm6]	C	A	3.186e^-4	0.634	NON_SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19737512	X_19737512_SNP [dm3] X_19843479_SNP [dm6]	G	T	3.189e^-4	0.634	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	1573917	2L_1573917_SNP [dm3] 2L_1573917_SNP [dm6]	C	T	3.190e^-4	0.634	INTRON haf
2L	9571826	2L_9571826_SNP [dm3] 2L_9571826_SNP [dm6]	A	G	3.192e^-4	0.634	INTRON CG3838
2L	723051	2L_723051_SNP [dm3] 2L_723051_SNP [dm6]	T	A	3.192e^-4	0.634	INTERGENIC
2R	18189903	2R_18189903_SNP [dm3] 2R_22302398_SNP [dm6]	C	A	3.194e^-4	0.634	UPSTREAM wdp INTRON wdp	TF binding site BDTNP1_TFBS_da
2R	18189956	2R_18189956_SNP [dm3] 2R_22302451_SNP [dm6]	G	C	3.194e^-4	0.634	INTRON wdp	TF binding site BDTNP1_TFBS_da
2R	19267285	2R_19267285_SNP [dm3] 2R_23379762_SNP [dm6]	A	C	3.203e^-4	0.634	SYNONYMOUS_CODING yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23210331	3R_23210331_SNP [dm3] 3R_27384609_SNP [dm6]	C	G	3.206e^-4	0.634	INTRON side
3R	17062951	3R_17062951_SNP [dm3] 3R_21237229_SNP [dm6]	G	T	3.214e^-4	0.634	UPSTREAM e INTERGENIC
3L	14429934	3L_14429934_SNP [dm3] 3L_14436834_SNP [dm6]	C	T	3.214e^-4	0.634	INTRON bbg
X	13272841	X_13272841_SNP [dm3] X_13378808_SNP [dm6]	T	C	3.215e^-4	0.634	SYNONYMOUS_CODING CG1640
2R	12518935	2R_12518935_SNP [dm3] 2R_16631430_SNP [dm6]	A	G	3.216e^-4	0.634	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7984532	2L_7984532_SNP [dm3] 2L_7984532_SNP [dm6]	A	T	3.222e^-4	0.634	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22289388	3R_22289388_SNP [dm3] 3R_26463666_SNP [dm6]	T	C	3.225e^-4	0.634	INTRON CG5455
2L	4025411	2L_4025411_SNP [dm3] 2L_4025411_SNP [dm6]	T	C	3.236e^-4	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8524326	2L_8524326_SNP [dm3] 2L_8524326_SNP [dm6]	C	T	3.237e^-4	0.634	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18971466	3R_18971466_SNP [dm3] 3R_23145744_SNP [dm6]	T	C	3.238e^-4	0.634	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	6293967	2L_6293967_DEL [dm3] 2L_6293967_DEL [dm6]	AAAGTCAAACATAAACTGCG...	A	3.241e^-4	0.634	INTRON Ddr
3L	12893917	3L_12893917_DEL [dm3] 3L_12900817_DEL [dm6]	TCAAGTGTTGCCAATATTCC...	T	3.244e^-4	0.634	DOWNSTREAM CG12520 INTERGENIC
3L	12893960	3L_12893960_DEL [dm3] 3L_12900860_DEL [dm6]	GTGTATGTGACTGAAATATA...	G	3.244e^-4	0.634	DOWNSTREAM CG12520 INTERGENIC
3L	10217941	3L_10217941_SNP [dm3] 3L_10224841_SNP [dm6]	G	A	3.246e^-4	0.634	INTRON scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15892491	2R_15892491_SNP [dm3] 2R_20004986_SNP [dm6]	C	G	3.255e^-4	0.634	UTR_5_PRIME CG16898
3R	9244758	3R_9244758_SNP [dm3] 3R_13419036_SNP [dm6]	A	T	3.257e^-4	0.634	INTERGENIC
X	4732525	X_4732525_SNP [dm3] X_4838492_SNP [dm6]	C	G	3.261e^-4	0.634	INTERGENIC
X	5818614	X_5818614_SNP [dm3] X_5924581_SNP [dm6]	A	T	3.262e^-4	0.634	INTRON CG3726
3L	486221	3L_486221_SNP [dm3] 3L_486221_SNP [dm6]	T	C	3.268e^-4	0.634	INTRON klar	TF binding site BDTNP1_TFBS_dl
2R	16865490	2R_16865490_SNP [dm3] 2R_20977985_SNP [dm6]	G	A	3.269e^-4	0.634	SYNONYMOUS_CODING CG15650 UPSTREAM CG9313 DOWNSTREAM CG9344
X	4539420	X_4539420_SNP [dm3] X_4645387_SNP [dm6]	T	A	3.273e^-4	0.634	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
2R	18183550	2R_18183550_SNP [dm3] 2R_22296045_SNP [dm6]	C	G	3.280e^-4	0.634	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
X	18737171	X_18737171_SNP [dm3] X_18843138_SNP [dm6]	C	A	3.282e^-4	0.634	UPSTREAM CG34422 DOWNSTREAM Pvf1 INTERGENIC
2L	1555380	2L_1555380_SNP [dm3] 2L_1555380_SNP [dm6]	G	A	3.286e^-4	0.634	UTR_5_PRIME haf INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14338345	3R_14338345_SNP [dm3] 3R_18512623_SNP [dm6]	A	T	3.288e^-4	0.634	INTRON fru
X	14973802	X_14973802_DEL [dm3] X_15079769_DEL [dm6]	TAGTTGT	T	3.288e^-4	0.634	UPSTREAM CR44661 EXON CR44662
3L	12391409	3L_12391409_SNP [dm3] 3L_12398309_SNP [dm6]	C	T	3.291e^-4	0.634	NON_SYNONYMOUS_CODING CG32104
3R	13868480	3R_13868480_SNP [dm3] 3R_18042758_SNP [dm6]	C	T	3.299e^-4	0.634	INTERGENIC
3R	15126558	3R_15126558_SNP [dm3] 3R_19300836_SNP [dm6]	T	C	3.301e^-4	0.634	INTERGENIC
3R	8279286	3R_8279286_SNP [dm3] 3R_12453564_SNP [dm6]	T	C	3.305e^-4	0.634	DOWNSTREAM CG5509 INTRON CG18549	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	8362211	3R_8362211_SNP [dm3] 3R_12536489_SNP [dm6]	T	C	3.319e^-4	0.634	INTRON Octbeta3R
2L	1285464	2L_1285464_SNP [dm3] 2L_1285464_SNP [dm6]	G	A	3.321e^-4	0.634	INTRON robo3
3R	9600611	3R_9600611_SNP [dm3] 3R_13774889_SNP [dm6]	C	A	3.322e^-4	0.634	INTRON CG9297
3L	12587798	3L_12587798_SNP [dm3] 3L_12594698_SNP [dm6]	T	C	3.323e^-4	0.634	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19834570	2R_19834570_SNP [dm3] 2R_23947047_SNP [dm6]	C	G	3.326e^-4	0.634	UTR_3_PRIME CG13565 DOWNSTREAM CG13565 & 1 other
2L	10646847	2L_10646847_SNP [dm3] 2L_10646847_SNP [dm6]	A	C	3.327e^-4	0.634	NON_SYNONYMOUS_CODING CG17097 DOWNSTREAM CG18284	TF binding site mE1_TFBS_inv mE1_TFBS_run
X	21890739	X_21890739_SNP [dm3] X_22488903_SNP [dm6]	A	T	3.328e^-4	0.634	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
2R	20126006	2R_20126006_SNP [dm3] 2R_24238483_SNP [dm6]	A	T	3.330e^-4	0.634	UPSTREAM CR44827 INTERGENIC
2L	13185771	2L_13185771_SNP [dm3] 2L_13185771_SNP [dm6]	G	C	3.332e^-4	0.634	SYNONYMOUS_CODING CG16974 DOWNSTREAM CG5458
X	19027600	X_19027600_SNP [dm3] X_19133567_SNP [dm6]	C	T	3.333e^-4	0.634	DOWNSTREAM CR45711 INTERGENIC
2L	18891105	2L_18891105_INS [dm3] 2L_18891105_INS [dm6]	A	AGTAAA	3.339e^-4	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15474729	2L_15474729_SNP [dm3] 2L_15474729_SNP [dm6]	G	A	3.341e^-4	0.634	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9658120	X_9658120_SNP [dm3] X_9764087_SNP [dm6]	T	C	3.351e^-4	0.635	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	4515517	2R_4515517_SNP [dm3] 2R_8628012_SNP [dm6]	T	C	3.353e^-4	0.635	UTR_5_PRIME CG14749 UPSTREAM beta3GalTII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	7306552	2L_7306552_SNP [dm3] 2L_7306552_SNP [dm6]	A	T	3.359e^-4	0.635	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco
2R	17810642	2R_17810642_INS [dm3] 2R_21923137_INS [dm6]	G	GG	3.361e^-4	0.635	INTRON Fili
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	3.377e^-4	0.635	INTRON CG34355
3L	10877331	3L_10877331_SNP [dm3] 3L_10884231_SNP [dm6]	T	A	3.377e^-4	0.635	DOWNSTREAM CG6404 & 1 other INTERGENIC
2R	10866482	2R_10866482_SNP [dm3] 2R_14978977_SNP [dm6]	A	G	3.377e^-4	0.635	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	2080601	2L_2080601_SNP [dm3] 2L_2080601_SNP [dm6]	C	T	3.378e^-4	0.635	SYNONYMOUS_CODING CG12674 INTRON dpr3
3L	6868021	3L_6868021_SNP [dm3] 3L_6874921_SNP [dm6]	C	G	3.380e^-4	0.635	INTERGENIC
3R	5645286	3R_5645286_SNP [dm3] 3R_9819564_SNP [dm6]	G	A	3.381e^-4	0.635	SYNONYMOUS_CODING CG9458 DOWNSTREAM CG42857
2L	1575643	2L_1575643_SNP [dm3] 2L_1575643_SNP [dm6]	C	A	3.384e^-4	0.635	INTRON haf
2L	12422152	2L_12422152_SNP [dm3] 2L_12422152_SNP [dm6]	G	C	3.393e^-4	0.636	UPSTREAM vir-1 INTRON vir-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Cuticul_2_Me_C22 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results