DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.962e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08539
In_3R_K	0.02887

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.027	0.0298
In_3R_K	13.2157	0.0013

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2897 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	1.272e^-7	0.182	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.936e^-7	0.182	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	3.913e^-7	0.235	INTERGENIC
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	5.010e^-7	0.235	INTRON Cad87A
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	1.091e^-6	0.281	INTRON salm	TF binding site mE1_TFBS_inv
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	1.144e^-6	0.281	INTRON salm	TF binding site mE1_TFBS_inv
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	1.151e^-6	0.281	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.199e^-6	0.281	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.511e^-6	0.315	INTRON 4EHP
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.936e^-6	0.315	INTRON Octbeta3R
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	1.947e^-6	0.315	SYNONYMOUS_CODING beat-Vc
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	2.051e^-6	0.315	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	2.296e^-6	0.315	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	2.354e^-6	0.315	INTRON salm
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	2.948e^-6	0.323	INTRON beat-Vc
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	2.981e^-6	0.323	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	3.064e^-6	0.323	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	12712338	3R_12712338_SNP [dm3] 3R_16886616_SNP [dm6]	G	T	3.104e^-6	0.323	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	3.347e^-6	0.326	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	3.943e^-6	0.326	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	4.096e^-6	0.326	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	4.291e^-6	0.326	INTRON Cad87A
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	4.895e^-6	0.326	INTRON timeout & 2 others
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	4.927e^-6	0.326	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	5.149e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	5.167e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8743846	3R_8743846_SNP [dm3] 3R_12918124_SNP [dm6]	T	A	5.756e^-6	0.326	INTRON beat-Vb
3L	1595582	3L_1595582_SNP [dm3] 3L_1595582_SNP [dm6]	G	A	5.945e^-6	0.326	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	420417	3L_420417_SNP [dm3] 3L_420417_SNP [dm6]	C	T	6.042e^-6	0.326	INTERGENIC
3R	16145832	3R_16145832_SNP [dm3] 3R_20320110_SNP [dm6]	C	A	6.084e^-6	0.326	INTRON CG42668
3R	16145837	3R_16145837_SNP [dm3] 3R_20320115_SNP [dm6]	A	G	6.084e^-6	0.326	INTRON CG42668
2L	13108885	2L_13108885_SNP [dm3] 2L_13108885_SNP [dm6]	T	G	6.233e^-6	0.326	INTRON CG5142
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	6.283e^-6	0.326	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	6.410e^-6	0.326	INTRON Octbeta3R
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	6.609e^-6	0.326	INTRON CR44320
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	6.696e^-6	0.326	UTR_5_PRIME CG15186
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	6.824e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	6.989e^-6	0.326	UPSTREAM CG44521 INTRON sif
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	7.119e^-6	0.326	INTRON Octbeta3R
3L	1592766	3L_1592766_SNP [dm3] 3L_1592766_SNP [dm6]	T	C	7.529e^-6	0.326	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	7.640e^-6	0.326	INTRON salm
2R	14662062	2R_14662062_SNP [dm3] 2R_18774557_SNP [dm6]	G	A	7.761e^-6	0.326	UTR_3_PRIME Mctp UPSTREAM CR43964
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	7.799e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	8.395e^-6	0.326	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	8.567e^-6	0.326	INTRON Cad87A
3R	8872581	3R_8872581_SNP [dm3] 3R_13046859_SNP [dm6]	G	T	8.933e^-6	0.326	SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	8.961e^-6	0.326	INTRON CG14877
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	9.111e^-6	0.326	INTRON timeout & 2 others
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	9.232e^-6	0.326	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	9.232e^-6	0.326	INTRON timeout & 2 others
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	9.340e^-6	0.326	INTRON timeout & 2 others
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	9.458e^-6	0.326	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	9.655e^-6	0.326	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	9.807e^-6	0.326	INTRON Octbeta3R
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	9.817e^-6	0.326	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	1.007e^-5	0.326	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	7797512	3R_7797512_SNP [dm3] 3R_11971790_SNP [dm6]	T	G	1.026e^-5	0.326	SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1
2R	15365766	2R_15365766_SNP [dm3] 2R_19478261_SNP [dm6]	G	C	1.066e^-5	0.326	INTRON par-1
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	1.071e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	1.072e^-5	0.326	INTRON salm
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	1.146e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	1.197e^-5	0.326	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	1.211e^-5	0.326	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	1.219e^-5	0.326	INTRON Ca-beta
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	1.220e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	1.249e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.250e^-5	0.326	INTRON salm
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	1.276e^-5	0.326	INTRON timeout & 2 others
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	1.301e^-5	0.326	INTRON beat-Vc
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	1.306e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10923897	2L_10923897_SNP [dm3] 2L_10923897_SNP [dm6]	G	A	1.355e^-5	0.326	INTRON dpr2
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	1.372e^-5	0.326	INTRON timeout & 2 others
3L	5962265	3L_5962265_SNP [dm3] 3L_5969165_SNP [dm6]	C	T	1.374e^-5	0.326	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	1.376e^-5	0.326	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	1.378e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	1.387e^-5	0.326	UTR_5_PRIME CG11686 UPSTREAM Ace
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	1.410e^-5	0.326	INTRON salm
3L	22842996	3L_22842996_SNP [dm3] 3L_22849896_SNP [dm6]	G	A	1.412e^-5	0.326	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	1.428e^-5	0.326	INTRON VGlut
3L	5962353	3L_5962353_SNP [dm3] 3L_5969253_SNP [dm6]	C	T	1.447e^-5	0.326	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	13437613	2L_13437613_SNP [dm3] 2L_13437613_SNP [dm6]	C	T	1.471e^-5	0.326	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	16144855	3R_16144855_DEL [dm3] 3R_20319133_DEL [dm6]	GG	G	1.482e^-5	0.326	INTRON CG42668
X	8465162	X_8465162_SNP [dm3] X_8571129_SNP [dm6]	C	A	1.483e^-5	0.326	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3R	8877058	3R_8877058_SNP [dm3] 3R_13051336_SNP [dm6]	G	A	1.484e^-5	0.326	UPSTREAM pic INTRON CG7966	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11193068	2L_11193068_SNP [dm3] 2L_11193068_SNP [dm6]	T	C	1.522e^-5	0.326	INTRON Ca-beta
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	1.547e^-5	0.326	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	1.549e^-5	0.326	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	1.553e^-5	0.326	INTERGENIC
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	1.561e^-5	0.326	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	1.568e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	1.580e^-5	0.326	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	1.635e^-5	0.333	INTRON CG14395
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	1.651e^-5	0.333	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3L	1592730	3L_1592730_SNP [dm3] 3L_1592730_SNP [dm6]	T	C	1.690e^-5	0.335	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2571564	3L_2571564_SNP [dm3] 3L_2571564_SNP [dm6]	C	T	1.708e^-5	0.335	INTRON msn
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	1.715e^-5	0.335	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	1.800e^-5	0.348	INTRON beat-Vc
3R	12713309	3R_12713309_INS [dm3] 3R_16887587_INS [dm6]	T	TTTTT	1.885e^-5	0.358	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	1.890e^-5	0.358	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15217828	X_15217828_SNP [dm3] X_15323795_SNP [dm6]	G	C	1.906e^-5	0.358	INTRON Top1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA

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Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C23_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results