DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.962e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08539
In_3R_K	0.02887

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.027	0.0298
In_3R_K	13.2157	0.0013

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2897 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	1.272e^-7	0.182	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.936e^-7	0.182	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	3.913e^-7	0.235	INTERGENIC
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	5.010e^-7	0.235	INTRON Cad87A
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	1.091e^-6	0.281	INTRON salm	TF binding site mE1_TFBS_inv
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	1.144e^-6	0.281	INTRON salm	TF binding site mE1_TFBS_inv
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	1.151e^-6	0.281	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.199e^-6	0.281	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.511e^-6	0.315	INTRON 4EHP
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	1.936e^-6	0.315	INTRON Octbeta3R
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	1.947e^-6	0.315	SYNONYMOUS_CODING beat-Vc
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	2.051e^-6	0.315	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	2.296e^-6	0.315	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	2.354e^-6	0.315	INTRON salm
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	2.948e^-6	0.323	INTRON beat-Vc
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	2.981e^-6	0.323	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	3.064e^-6	0.323	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	12712338	3R_12712338_SNP [dm3] 3R_16886616_SNP [dm6]	G	T	3.104e^-6	0.323	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	3.347e^-6	0.326	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11441399	2L_11441399_SNP [dm3] 2L_11441399_SNP [dm6]	G	A	3.943e^-6	0.326	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	4.096e^-6	0.326	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	4.291e^-6	0.326	INTRON Cad87A
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	4.895e^-6	0.326	INTRON timeout & 2 others
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	4.927e^-6	0.326	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
2L	11455062	2L_11455062_SNP [dm3] 2L_11455062_SNP [dm6]	A	T	5.149e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11448221	2L_11448221_SNP [dm3] 2L_11448221_SNP [dm6]	A	C	5.167e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8743846	3R_8743846_SNP [dm3] 3R_12918124_SNP [dm6]	T	A	5.756e^-6	0.326	INTRON beat-Vb
3L	1595582	3L_1595582_SNP [dm3] 3L_1595582_SNP [dm6]	G	A	5.945e^-6	0.326	NON_SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	420417	3L_420417_SNP [dm3] 3L_420417_SNP [dm6]	C	T	6.042e^-6	0.326	INTERGENIC
3R	16145832	3R_16145832_SNP [dm3] 3R_20320110_SNP [dm6]	C	A	6.084e^-6	0.326	INTRON CG42668
3R	16145837	3R_16145837_SNP [dm3] 3R_20320115_SNP [dm6]	A	G	6.084e^-6	0.326	INTRON CG42668
2L	13108885	2L_13108885_SNP [dm3] 2L_13108885_SNP [dm6]	T	G	6.233e^-6	0.326	INTRON CG5142
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	6.283e^-6	0.326	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	6.410e^-6	0.326	INTRON Octbeta3R
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	6.609e^-6	0.326	INTRON CR44320
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	6.696e^-6	0.326	UTR_5_PRIME CG15186
2L	11455144	2L_11455144_SNP [dm3] 2L_11455144_SNP [dm6]	A	G	6.824e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5706169	3L_5706169_SNP [dm3] 3L_5713069_SNP [dm6]	C	A	6.989e^-6	0.326	UPSTREAM CG44521 INTRON sif
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	7.119e^-6	0.326	INTRON Octbeta3R
3L	1592766	3L_1592766_SNP [dm3] 3L_1592766_SNP [dm6]	T	C	7.529e^-6	0.326	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	7.640e^-6	0.326	INTRON salm
2R	14662062	2R_14662062_SNP [dm3] 2R_18774557_SNP [dm6]	G	A	7.761e^-6	0.326	UTR_3_PRIME Mctp UPSTREAM CR43964
2L	11448236	2L_11448236_SNP [dm3] 2L_11448236_SNP [dm6]	G	C	7.799e^-6	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	8.395e^-6	0.326	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	8.567e^-6	0.326	INTRON Cad87A
3R	8872581	3R_8872581_SNP [dm3] 3R_13046859_SNP [dm6]	G	T	8.933e^-6	0.326	SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	8.961e^-6	0.326	INTRON CG14877
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	9.111e^-6	0.326	INTRON timeout & 2 others
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	9.232e^-6	0.326	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	9.232e^-6	0.326	INTRON timeout & 2 others
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	9.340e^-6	0.326	INTRON timeout & 2 others
3L	1593572	3L_1593572_SNP [dm3] 3L_1593572_SNP [dm6]	G	A	9.458e^-6	0.326	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	9.655e^-6	0.326	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	8340375	3R_8340375_SNP [dm3] 3R_12514653_SNP [dm6]	T	A	9.807e^-6	0.326	INTRON Octbeta3R
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	9.817e^-6	0.326	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9328579	3L_9328579_SNP [dm3] 3L_9335479_SNP [dm6]	C	G	1.007e^-5	0.326	UPSTREAM PGRP-LA INTRON PGRP-LA
3R	7797512	3R_7797512_SNP [dm3] 3R_11971790_SNP [dm6]	T	G	1.026e^-5	0.326	SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1
2R	15365766	2R_15365766_SNP [dm3] 2R_19478261_SNP [dm6]	G	C	1.066e^-5	0.326	INTRON par-1
2L	11446685	2L_11446685_SNP [dm3] 2L_11446685_SNP [dm6]	G	A	1.071e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	1.072e^-5	0.326	INTRON salm
2L	11455136	2L_11455136_DEL [dm3] 2L_11455136_DEL [dm6]	TT	T	1.146e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22842890	3L_22842890_SNP [dm3] 3L_22849790_SNP [dm6]	A	G	1.197e^-5	0.326	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	1.211e^-5	0.326	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
2L	11193478	2L_11193478_SNP [dm3] 2L_11193478_SNP [dm6]	G	T	1.219e^-5	0.326	INTRON Ca-beta
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	1.220e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447487	2L_11447487_SNP [dm3] 2L_11447487_SNP [dm6]	G	A	1.249e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.250e^-5	0.326	INTRON salm
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	1.276e^-5	0.326	INTRON timeout & 2 others
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	1.301e^-5	0.326	INTRON beat-Vc
2L	11448182	2L_11448182_SNP [dm3] 2L_11448182_SNP [dm6]	G	A	1.306e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10923897	2L_10923897_SNP [dm3] 2L_10923897_SNP [dm6]	G	A	1.355e^-5	0.326	INTRON dpr2
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	1.372e^-5	0.326	INTRON timeout & 2 others
3L	5962265	3L_5962265_SNP [dm3] 3L_5969165_SNP [dm6]	C	T	1.374e^-5	0.326	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	1.376e^-5	0.326	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
2L	11448239	2L_11448239_SNP [dm3] 2L_11448239_SNP [dm6]	T	C	1.378e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	1.387e^-5	0.326	UTR_5_PRIME CG11686 UPSTREAM Ace
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	1.410e^-5	0.326	INTRON salm
3L	22842996	3L_22842996_SNP [dm3] 3L_22849896_SNP [dm6]	G	A	1.412e^-5	0.326	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2397528	2L_2397528_INS [dm3] 2L_2397528_INS [dm6]	T	TTGT	1.428e^-5	0.326	INTRON VGlut
3L	5962353	3L_5962353_SNP [dm3] 3L_5969253_SNP [dm6]	C	T	1.447e^-5	0.326	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	13437613	2L_13437613_SNP [dm3] 2L_13437613_SNP [dm6]	C	T	1.471e^-5	0.326	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	16144855	3R_16144855_DEL [dm3] 3R_20319133_DEL [dm6]	GG	G	1.482e^-5	0.326	INTRON CG42668
X	8465162	X_8465162_SNP [dm3] X_8571129_SNP [dm6]	C	A	1.483e^-5	0.326	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3R	8877058	3R_8877058_SNP [dm3] 3R_13051336_SNP [dm6]	G	A	1.484e^-5	0.326	UPSTREAM pic INTRON CG7966	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11193068	2L_11193068_SNP [dm3] 2L_11193068_SNP [dm6]	T	C	1.522e^-5	0.326	INTRON Ca-beta
3L	9328580	3L_9328580_SNP [dm3] 3L_9335480_SNP [dm6]	T	C	1.547e^-5	0.326	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	1.549e^-5	0.326	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	1.553e^-5	0.326	INTERGENIC
2L	11446429	2L_11446429_SNP [dm3] 2L_11446429_SNP [dm6]	G	T	1.561e^-5	0.326	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11448199	2L_11448199_SNP [dm3] 2L_11448199_SNP [dm6]	T	A	1.568e^-5	0.326	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	1.580e^-5	0.326	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	1.635e^-5	0.333	INTRON CG14395
2L	15854133	2L_15854133_SNP [dm3] 2L_15854133_SNP [dm6]	A	G	1.651e^-5	0.333	START_GAINED Tektin-A UTR_5_PRIME Tektin-A UPSTREAM Tektin-A DOWNSTREAM CG13243
3L	1592730	3L_1592730_SNP [dm3] 3L_1592730_SNP [dm6]	T	C	1.690e^-5	0.335	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2571564	3L_2571564_SNP [dm3] 3L_2571564_SNP [dm6]	C	T	1.708e^-5	0.335	INTRON msn
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	1.715e^-5	0.335	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	1.800e^-5	0.348	INTRON beat-Vc
3R	12713309	3R_12713309_INS [dm3] 3R_16887587_INS [dm6]	T	TTTTT	1.885e^-5	0.358	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11448201	2L_11448201_SNP [dm3] 2L_11448201_SNP [dm6]	C	A	1.890e^-5	0.358	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15217828	X_15217828_SNP [dm3] X_15323795_SNP [dm6]	G	C	1.906e^-5	0.358	INTRON Top1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.954e^-5	0.359	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	22031411	3R_22031411_SNP [dm3] 3R_26205689_SNP [dm6]	G	C	1.985e^-5	0.359	INTRON CR44320
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	1.988e^-5	0.359	INTERGENIC
2R	5029648	2R_5029648_SNP [dm3] 2R_9142143_SNP [dm6]	G	C	1.990e^-5	0.359	DOWNSTREAM shrb & 2 others INTERGENIC
3R	8646044	3R_8646044_SNP [dm3] 3R_12820322_SNP [dm6]	C	A	2.044e^-5	0.359	INTERGENIC
3R	19895031	3R_19895031_SNP [dm3] 3R_24069309_SNP [dm6]	C	T	2.048e^-5	0.359	INTRON 4EHP
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	2.050e^-5	0.359	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
2L	11197137	2L_11197137_SNP [dm3] 2L_11197137_SNP [dm6]	T	C	2.127e^-5	0.368	INTRON Ca-beta
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	2.139e^-5	0.368	INTERGENIC
3R	8867170	3R_8867170_SNP [dm3] 3R_13041448_SNP [dm6]	T	C	2.171e^-5	0.368	NON_SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3R	8888572	3R_8888572_INS [dm3] 3R_13062850_INS [dm6]	T	TACGGTTTATAGT...	2.178e^-5	0.368	INTRON sim
3R	8890820	3R_8890820_SNP [dm3] 3R_13065098_SNP [dm6]	A	T	2.280e^-5	0.379	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	2.301e^-5	0.379	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3R	8578327	3R_8578327_SNP [dm3] 3R_12752605_SNP [dm6]	T	C	2.304e^-5	0.379	SYNONYMOUS_CODING beat-Vc
3R	8877329	3R_8877329_SNP [dm3] 3R_13051607_SNP [dm6]	T	C	2.375e^-5	0.384	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16145147	3R_16145147_SNP [dm3] 3R_20319425_SNP [dm6]	G	A	2.376e^-5	0.384	INTRON CG42668
3R	8542603	3R_8542603_SNP [dm3] 3R_12716881_SNP [dm6]	A	T	2.411e^-5	0.386	INTRON Men
3R	8771965	3R_8771965_SNP [dm3] 3R_12946243_SNP [dm6]	C	A	2.436e^-5	0.387	INTERGENIC
3L	3755925	3L_3755925_SNP [dm3] 3L_3755925_SNP [dm6]	A	G	2.532e^-5	0.399	UPSTREAM ppk27 INTRON CG32264
3R	8785260	3R_8785260_SNP [dm3] 3R_12959538_SNP [dm6]	G	T	2.551e^-5	0.399	SYNONYMOUS_CODING grsm	TF binding site mE1_TFBS_cad
3R	20913489	3R_20913489_SNP [dm3] 3R_25087767_SNP [dm6]	G	C	2.572e^-5	0.399	INTERGENIC
3L	11892865	3L_11892865_SNP [dm3] 3L_11899765_SNP [dm6]	G	A	2.613e^-5	0.399	INTRON CG44837 & 1 other
3R	8721895	3R_8721895_SNP [dm3] 3R_12896173_SNP [dm6]	A	G	2.614e^-5	0.399	INTERGENIC
3L	12476137	3L_12476137_SNP [dm3] 3L_12483037_SNP [dm6]	G	T	2.654e^-5	0.401	INTRON CG10663 & 1 other
2L	5439524	2L_5439524_SNP [dm3] 2L_5439524_SNP [dm6]	T	A	2.689e^-5	0.404	UPSTREAM CR31647 INTERGENIC
X	8683022	X_8683022_SNP [dm3] X_8788989_SNP [dm6]	A	G	2.756e^-5	0.41	INTRON Lim1
2L	886010	2L_886010_SNP [dm3] 2L_886010_SNP [dm6]	G	A	2.933e^-5	0.411	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	2.946e^-5	0.411	INTERGENIC
3L	3755751	3L_3755751_MNP [dm3] 3L_3755751_MNP [dm6]	GCC	CAA	2.973e^-5	0.411	UPSTREAM ppk27 INTRON CG32264
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	2.975e^-5	0.411	DOWNSTREAM CG15483 INTERGENIC
2L	5169440	2L_5169440_SNP [dm3] 2L_5169440_SNP [dm6]	T	C	3.028e^-5	0.411	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	8884427	3R_8884427_DEL [dm3] 3R_13058705_DEL [dm6]	AAGGGAAA	A	3.043e^-5	0.411	INTRON sim	TF binding site mE1_TFBS_Kr
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	3.046e^-5	0.411	INTRON salm
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	3.051e^-5	0.411	INTRON salm
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	3.082e^-5	0.411	INTERGENIC
2R	11605319	2R_11605319_SNP [dm3] 2R_15717814_SNP [dm6]	A	C	3.097e^-5	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	3.130e^-5	0.411	INTERGENIC
2L	11448198	2L_11448198_SNP [dm3] 2L_11448198_SNP [dm6]	T	A	3.143e^-5	0.411	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11448202	2L_11448202_INS [dm3] 2L_11448202_INS [dm6]	A	ATAATTATACAT...	3.148e^-5	0.411	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6879827	X_6879827_SNP [dm3] X_6985794_SNP [dm6]	G	A	3.179e^-5	0.411	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	11426405	2L_11426405_SNP [dm3] 2L_11426405_SNP [dm6]	A	G	3.213e^-5	0.411	INTERGENIC
2L	11193602	2L_11193602_SNP [dm3] 2L_11193602_SNP [dm6]	T	G	3.222e^-5	0.411	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3R	10234852	3R_10234852_SNP [dm3] 3R_14409130_SNP [dm6]	C	A	3.230e^-5	0.411	SYNONYMOUS_CODING cv-c
3R	8506260	3R_8506260_SNP [dm3] 3R_12680538_SNP [dm6]	C	T	3.256e^-5	0.411	INTRON Cyp313a4
X	7243100	X_7243100_SNP [dm3] X_7349067_SNP [dm6]	C	T	3.270e^-5	0.411	INTRON CR44357 & 1 other
3R	8878828	3R_8878828_DEL [dm3] 3R_13053106_DEL [dm6]	ACCCTG	A	3.291e^-5	0.411	INTRON pic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	12713153	3R_12713153_INS [dm3] 3R_16887431_INS [dm6]	A	AAA	3.305e^-5	0.411	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7774132	3R_7774132_SNP [dm3] 3R_11948410_SNP [dm6]	A	G	3.338e^-5	0.411	INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8702606	3R_8702606_SNP [dm3] 3R_12876884_SNP [dm6]	A	C	3.348e^-5	0.411	INTERGENIC
3R	8883018	3R_8883018_SNP [dm3] 3R_13057296_SNP [dm6]	T	C	3.367e^-5	0.411	UPSTREAM sim DOWNSTREAM pic INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12475243	3L_12475243_SNP [dm3] 3L_12482143_SNP [dm6]	C	G	3.408e^-5	0.411	UPSTREAM CG33725 INTRON CG10663
X	8681815	X_8681815_SNP [dm3] X_8787782_SNP [dm6]	T	C	3.422e^-5	0.411	SYNONYMOUS_CODING Lim1
3R	19990741	3R_19990741_SNP [dm3] 3R_24165019_SNP [dm6]	C	A	3.441e^-5	0.411	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16381548	2R_16381548_SNP [dm3] 2R_20494043_SNP [dm6]	C	T	3.472e^-5	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11448546	2L_11448546_SNP [dm3] 2L_11448546_SNP [dm6]	C	A	3.504e^-5	0.411	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12757958	3R_12757958_SNP [dm3] 3R_16932236_SNP [dm6]	G	C	3.505e^-5	0.411	UPSTREAM Abd-B INTRON Abd-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11192863	2L_11192863_DEL [dm3] 2L_11192863_DEL [dm6]	TTCAACT	T	3.516e^-5	0.411	INTRON Ca-beta
3R	8977070	3R_8977070_DEL [dm3] 3R_13151348_DEL [dm6]	AGACA	A	3.540e^-5	0.411	INTRON timeout & 2 others
3R	22962190	3R_22962190_SNP [dm3] 3R_27136468_SNP [dm6]	C	T	3.556e^-5	0.411	INTRON CG6051
3R	8707659	3R_8707659_SNP [dm3] 3R_12881937_SNP [dm6]	T	A	3.568e^-5	0.411	INTERGENIC
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	3.570e^-5	0.411	INTRON CG45186
3R	8701872	3R_8701872_SNP [dm3] 3R_12876150_SNP [dm6]	T	C	3.573e^-5	0.411	INTERGENIC
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	3.620e^-5	0.411	INTRON salm
2R	16381345	2R_16381345_SNP [dm3] 2R_20493840_SNP [dm6]	C	T	3.632e^-5	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8479292	3R_8479292_SNP [dm3] 3R_12653570_SNP [dm6]	C	T	3.660e^-5	0.411	DOWNSTREAM Dtg INTERGENIC
2L	19437195	2L_19437195_SNP [dm3] 2L_19437195_SNP [dm6]	C	A	3.690e^-5	0.411	INTRON CG10237
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	3.698e^-5	0.411	INTRON salm
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	3.789e^-5	0.411	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	3.792e^-5	0.411	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8877410	3R_8877410_SNP [dm3] 3R_13051688_SNP [dm6]	G	A	3.796e^-5	0.411	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	6879456	X_6879456_SNP [dm3] X_6985423_SNP [dm6]	A	C	3.818e^-5	0.411	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	3.849e^-5	0.411	INTRON Octbeta2R
3R	8464121	3R_8464121_SNP [dm3] 3R_12638399_SNP [dm6]	G	T	3.896e^-5	0.411	UPSTREAM CG11608 DOWNSTREAM CG11600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9974020	2R_9974020_DEL [dm3] 2R_14086515_DEL [dm6]	TA	C	3.906e^-5	0.411	INTRON Prosap
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	3.907e^-5	0.411	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3L	3755798	3L_3755798_SNP [dm3] 3L_3755798_SNP [dm6]	C	G	3.908e^-5	0.411	UPSTREAM ppk27 INTRON CG32264
2L	16016832	2L_16016832_SNP [dm3] 2L_16016832_SNP [dm6]	C	A	3.909e^-5	0.411	INTRON beat-Ic
2L	15854328	2L_15854328_SNP [dm3] 2L_15854328_SNP [dm6]	G	C	3.953e^-5	0.411	UTR_5_PRIME Tektin-A DOWNSTREAM CG13243
3R	8864676	3R_8864676_SNP [dm3] 3R_13038954_SNP [dm6]	A	G	3.975e^-5	0.411	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	3.978e^-5	0.411	UPSTREAM CG11686 & 1 other INTERGENIC
3R	8707693	3R_8707693_SNP [dm3] 3R_12881971_SNP [dm6]	A	C	3.984e^-5	0.411	INTERGENIC
3R	7112350	3R_7112350_SNP [dm3] 3R_11286628_SNP [dm6]	G	A	4.049e^-5	0.411	INTRON CR31386
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	4.051e^-5	0.411	INTRON salm
2L	5169427	2L_5169427_SNP [dm3] 2L_5169427_SNP [dm6]	G	A	4.063e^-5	0.411	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	8888950	3R_8888950_SNP [dm3] 3R_13063228_SNP [dm6]	G	A	4.085e^-5	0.411	INTRON sim	TF binding site BDTNP1_TFBS_dl
3R	25494059	3R_25494059_SNP [dm3] 3R_29668337_SNP [dm6]	C	G	4.111e^-5	0.411	NON_SYNONYMOUS_CODING ppk20 UPSTREAM ppk30	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10096549	2R_10096549_SNP [dm3] 2R_14209044_SNP [dm6]	A	T	4.146e^-5	0.411	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	4.160e^-5	0.411	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	4.164e^-5	0.411	UPSTREAM CG6527 INTRON A2bp1
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	4.165e^-5	0.411	INTRON cu
3R	8771941	3R_8771941_SNP [dm3] 3R_12946219_SNP [dm6]	G	A	4.205e^-5	0.411	INTERGENIC
3L	9425183	3L_9425183_SNP [dm3] 3L_9432083_SNP [dm6]	A	G	4.222e^-5	0.411	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8886986	3R_8886986_SNP [dm3] 3R_13061264_SNP [dm6]	G	A	4.246e^-5	0.411	INTRON sim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8891758	3R_8891758_SNP [dm3] 3R_13066036_SNP [dm6]	C	G	4.261e^-5	0.411	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8866923	3R_8866923_SNP [dm3] 3R_13041201_SNP [dm6]	T	C	4.293e^-5	0.411	SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3R	2937922	3R_2937922_SNP [dm3] 3R_7112200_SNP [dm6]	T	C	4.298e^-5	0.411	UPSTREAM Alh INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	4.323e^-5	0.412	UTR_3_PRIME CG9970 INTRON Shab
2L	11442658	2L_11442658_SNP [dm3] 2L_11442658_SNP [dm6]	C	A	4.352e^-5	0.412	INTRON salm
3R	19990357	3R_19990357_SNP [dm3] 3R_24164635_SNP [dm6]	A	T	4.383e^-5	0.413	SYNONYMOUS_CODING Apc2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	8877274	3R_8877274_SNP [dm3] 3R_13051552_SNP [dm6]	G	A	4.464e^-5	0.417	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	8707874	3R_8707874_SNP [dm3] 3R_12882152_SNP [dm6]	T	C	4.473e^-5	0.417	INTERGENIC
3R	8707681	3R_8707681_SNP [dm3] 3R_12881959_SNP [dm6]	A	G	4.493e^-5	0.417	INTERGENIC
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	4.541e^-5	0.42	INTRON salm
X	15217735	X_15217735_SNP [dm3] X_15323702_SNP [dm6]	A	G	4.629e^-5	0.426	SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12759267	3R_12759267_SNP [dm3] 3R_16933545_SNP [dm6]	A	C	4.690e^-5	0.427	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	5060918	3L_5060918_SNP [dm3] 3L_5060918_SNP [dm6]	A	G	4.753e^-5	0.427	INTRON Con
3L	2604424	3L_2604424_SNP [dm3] 3L_2604424_SNP [dm6]	G	T	4.754e^-5	0.427	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12712708	3R_12712708_SNP [dm3] 3R_16886986_SNP [dm6]	G	A	4.762e^-5	0.427	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	5603426	3L_5603426_DEL [dm3] 3L_5610326_DEL [dm6]	TA	T	4.769e^-5	0.427	INTERGENIC
3R	8542604	3R_8542604_SNP [dm3] 3R_12716882_SNP [dm6]	A	C	4.825e^-5	0.427	INTRON Men
3L	2604371	3L_2604371_SNP [dm3] 3L_2604371_SNP [dm6]	G	A	4.994e^-5	0.427	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8890538	3R_8890538_DEL [dm3] 3R_13064816_DEL [dm6]	CT	C	5.001e^-5	0.427	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	22704366	3R_22704366_SNP [dm3] 3R_26878644_SNP [dm6]	G	A	5.021e^-5	0.427	INTRON CG5500 & 1 other
3R	22829384	3R_22829384_SNP [dm3] 3R_27003662_SNP [dm6]	C	A	5.023e^-5	0.427	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19216210	2R_19216210_INS [dm3] 2R_23328687_INS [dm6]	C	CAGAGATCCCATA...	5.045e^-5	0.427	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	5.077e^-5	0.427	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	5.087e^-5	0.427	SYNONYMOUS_CODING GC1
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	5.093e^-5	0.427	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	5.099e^-5	0.427	INTERGENIC
2L	11442707	2L_11442707_SNP [dm3] 2L_11442707_SNP [dm6]	A	C	5.109e^-5	0.427	INTRON salm
3R	8702319	3R_8702319_SNP [dm3] 3R_12876597_SNP [dm6]	G	A	5.115e^-5	0.427	INTERGENIC
2L	19251764	2L_19251764_SNP [dm3] 2L_19251764_SNP [dm6]	A	G	5.124e^-5	0.427	INTERGENIC
X	16032341	X_16032341_SNP [dm3] X_16138308_SNP [dm6]	G	T	5.130e^-5	0.427	INTRON disco-r
3L	5610219	3L_5610219_SNP [dm3] 3L_5617119_SNP [dm6]	T	C	5.178e^-5	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22704476	3R_22704476_SNP [dm3] 3R_26878754_SNP [dm6]	A	G	5.215e^-5	0.427	INTRON CG5500 & 1 other
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	5.236e^-5	0.427	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7026683	3R_7026683_SNP [dm3] 3R_11200961_SNP [dm6]	A	C	5.236e^-5	0.427	INTRON cu
3R	13713485	3R_13713485_SNP [dm3] 3R_17887763_SNP [dm6]	G	A	5.238e^-5	0.427	INTRON Rim
3R	8889756	3R_8889756_SNP [dm3] 3R_13064034_SNP [dm6]	C	G	5.266e^-5	0.427	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8468177	3R_8468177_SNP [dm3] 3R_12642455_SNP [dm6]	G	T	5.287e^-5	0.427	UTR_5_PRIME CG6753	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	5.287e^-5	0.427	EXON CR44942	TF binding site BDTNP1_TFBS_twi
3R	7768547	3R_7768547_SNP [dm3] 3R_11942825_SNP [dm6]	A	T	5.289e^-5	0.427	INTRON Cad87A
2L	4976664	2L_4976664_SNP [dm3] 2L_4976664_SNP [dm6]	T	G	5.305e^-5	0.427	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
3R	8888028	3R_8888028_SNP [dm3] 3R_13062306_SNP [dm6]	G	A	5.338e^-5	0.428	UPSTREAM sim INTRON sim
3L	1725692	3L_1725692_SNP [dm3] 3L_1725692_SNP [dm6]	A	T	5.374e^-5	0.428	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	10186956	3R_10186956_SNP [dm3] 3R_14361234_SNP [dm6]	T	A	5.384e^-5	0.428	UTR_5_PRIME CG31320 INTRON NK7.1
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	5.431e^-5	0.43	INTRON Cad87A
X	6879453	X_6879453_SNP [dm3] X_6985420_SNP [dm6]	A	T	5.517e^-5	0.43	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14512868	3L_14512868_SNP [dm3] 3L_14519768_SNP [dm6]	A	G	5.526e^-5	0.43	UTR_3_PRIME CG4613 DOWNSTREAM CG4613 INTRON bbg
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	5.530e^-5	0.43	INTRON Ref2
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	5.570e^-5	0.43	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	5.571e^-5	0.43	INTERGENIC
3R	8578318	3R_8578318_SNP [dm3] 3R_12752596_SNP [dm6]	A	G	5.573e^-5	0.43	SYNONYMOUS_CODING beat-Vc
2R	15365812	2R_15365812_SNP [dm3] 2R_19478307_SNP [dm6]	T	C	5.593e^-5	0.43	INTRON par-1
3R	8709943	3R_8709943_SNP [dm3] 3R_12884221_SNP [dm6]	C	A	5.617e^-5	0.43	INTERGENIC
3R	8934686	3R_8934686_SNP [dm3] 3R_13108964_SNP [dm6]	C	T	5.673e^-5	0.432	INTRON timeout
2L	11426402	2L_11426402_SNP [dm3] 2L_11426402_SNP [dm6]	G	T	5.714e^-5	0.432	INTERGENIC
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	5.748e^-5	0.432	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	5.799e^-5	0.432	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8685440	3R_8685440_SNP [dm3] 3R_12859718_SNP [dm6]	T	C	5.812e^-5	0.432	UPSTREAM CG10126 INTERGENIC
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	5.815e^-5	0.432	INTRON Cad87A
3L	19096539	3L_19096539_SNP [dm3] 3L_19103439_SNP [dm6]	C	A	5.870e^-5	0.432	INTERGENIC
3R	8723915	3R_8723915_INS [dm3] 3R_12898193_INS [dm6]	G	GTTTCTG	5.888e^-5	0.432	INTERGENIC
3L	4057515	3L_4057515_SNP [dm3] 3L_4057515_SNP [dm6]	G	A	5.889e^-5	0.432	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7452430	2R_7452430_DEL [dm3] 2R_11564925_DEL [dm6]	GCCG	G	5.942e^-5	0.432	INTERGENIC
3L	7568737	3L_7568737_SNP [dm3] 3L_7575637_SNP [dm6]	A	G	5.948e^-5	0.432	INTERGENIC
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	5.986e^-5	0.432	INTRON capu	TF binding site mE1_TFBS_bab1
3R	5652022	3R_5652022_SNP [dm3] 3R_9826300_SNP [dm6]	G	A	5.999e^-5	0.432	UTR_3_PRIME Teh1
2L	18381170	2L_18381170_SNP [dm3] 2L_18381170_SNP [dm6]	T	C	6.002e^-5	0.432	INTRON Fas3
2L	13437642	2L_13437642_SNP [dm3] 2L_13437642_SNP [dm6]	C	T	6.003e^-5	0.432	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	14406278	3R_14406278_SNP [dm3] 3R_18580556_SNP [dm6]	C	G	6.022e^-5	0.432	INTRON fray & 1 other
2L	14550370	2L_14550370_SNP [dm3] 2L_14550370_SNP [dm6]	T	C	6.034e^-5	0.432	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15125369	3R_15125369_SNP [dm3] 3R_19299647_SNP [dm6]	A	C	6.091e^-5	0.434	INTERGENIC	TF binding site mE1_TFBS_sens
X	8465172	X_8465172_SNP [dm3] X_8571139_SNP [dm6]	C	T	6.145e^-5	0.437	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3L	5697781	3L_5697781_SNP [dm3] 3L_5704681_SNP [dm6]	A	T	6.220e^-5	0.44	INTRON sif	TF binding site mE1_TFBS_cad
2R	15366009	2R_15366009_SNP [dm3] 2R_19478504_SNP [dm6]	A	T	6.249e^-5	0.441	INTRON par-1
3R	8893050	3R_8893050_SNP [dm3] 3R_13067328_SNP [dm6]	C	T	6.364e^-5	0.442	INTRON sim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8890400	3R_8890400_DEL [dm3] 3R_13064678_DEL [dm6]	CTTTGTTCTTAGTAGC...	C	6.435e^-5	0.442	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8716510	3R_8716510_SNP [dm3] 3R_12890788_SNP [dm6]	G	A	6.442e^-5	0.442	INTERGENIC
2L	22435673	2L_22435673_SNP [dm3] 2L_22542941_SNP [dm6]	C	T	6.450e^-5	0.442	INTRON CG17490
3R	8712178	3R_8712178_SNP [dm3] 3R_12886456_SNP [dm6]	G	T	6.499e^-5	0.442	INTERGENIC
3R	8866873	3R_8866873_SNP [dm3] 3R_13041151_SNP [dm6]	T	G	6.504e^-5	0.442	SPLICE_SITE_REGION snk UPSTREAM CG11670 DOWNSTREAM CG11668 INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25837369	3R_25837369_SNP [dm3] 3R_30011647_SNP [dm6]	A	T	6.521e^-5	0.442	INTRON CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	6.541e^-5	0.442	INTERGENIC
3L	966311	3L_966311_SNP [dm3] 3L_966311_SNP [dm6]	T	C	6.542e^-5	0.442	INTRON Glut1
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	6.571e^-5	0.442	INTRON salm
3R	24660106	3R_24660106_SNP [dm3] 3R_28834384_SNP [dm6]	T	A	6.573e^-5	0.442	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	6.578e^-5	0.442	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8877455	3R_8877455_SNP [dm3] 3R_13051733_SNP [dm6]	T	A	6.587e^-5	0.442	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19960383	3L_19960383_SNP [dm3] 3L_19967283_SNP [dm6]	G	A	6.616e^-5	0.442	INTRON Ac76E
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	6.653e^-5	0.442	INTRON CR44941
2R	20215325	2R_20215325_SNP [dm3] 2R_24327802_SNP [dm6]	T	A	6.678e^-5	0.442	INTRON CR44810
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	6.683e^-5	0.442	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	9555411	3R_9555411_SNP [dm3] 3R_13729689_SNP [dm6]	G	T	6.794e^-5	0.442	INTRON CG34383	TF binding site mE1_TFBS_inv
3R	8884490	3R_8884490_SNP [dm3] 3R_13058768_SNP [dm6]	T	C	6.832e^-5	0.442	INTRON sim	TF binding site mE1_TFBS_Kr
2R	10755270	2R_10755270_SNP [dm3] 2R_14867765_SNP [dm6]	A	T	6.832e^-5	0.442	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8890699	3R_8890699_SNP [dm3] 3R_13064977_SNP [dm6]	A	G	6.849e^-5	0.442	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	13492330	2L_13492330_SNP [dm3] 2L_13492330_SNP [dm6]	G	A	6.850e^-5	0.442	INTRON CG42784
3L	18850157	3L_18850157_SNP [dm3] 3L_18857057_SNP [dm6]	G	A	6.855e^-5	0.442	EXON CR45388
3L	6877153	3L_6877153_SNP [dm3] 3L_6884053_SNP [dm6]	C	A	6.880e^-5	0.442	UPSTREAM CR45416 INTERGENIC
3L	1597840	3L_1597840_SNP [dm3] 3L_1597840_SNP [dm6]	C	T	6.938e^-5	0.442	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6078427	2R_6078427_SNP [dm3] 2R_10190922_SNP [dm6]	T	C	6.949e^-5	0.442	INTRON KCNQ
3R	22829028	3R_22829028_SNP [dm3] 3R_27003306_SNP [dm6]	G	A	6.955e^-5	0.442	UTR_3_PRIME CG6296 DOWNSTREAM CG31077 INTRON RYa-R
3R	8884100	3R_8884100_SNP [dm3] 3R_13058378_SNP [dm6]	G	A	6.972e^-5	0.442	INTRON sim	TF binding site mE1_TFBS_HSA
3R	8622699	3R_8622699_SNP [dm3] 3R_12796977_SNP [dm6]	T	C	6.977e^-5	0.442	INTERGENIC
2L	11447279	2L_11447279_SNP [dm3] 2L_11447279_SNP [dm6]	C	T	7.019e^-5	0.442	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12712797	3R_12712797_SNP [dm3] 3R_16887075_SNP [dm6]	T	C	7.026e^-5	0.442	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4976712	2L_4976712_SNP [dm3] 2L_4976712_SNP [dm6]	A	G	7.071e^-5	0.442	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	7.095e^-5	0.442	INTRON salm
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	7.138e^-5	0.442	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	8765615	3R_8765615_SNP [dm3] 3R_12939893_SNP [dm6]	C	T	7.155e^-5	0.442	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8394727	3R_8394727_SNP [dm3] 3R_12569005_SNP [dm6]	C	T	7.165e^-5	0.442	INTRON Octbeta2R
3R	8513424	3R_8513424_SNP [dm3] 3R_12687702_SNP [dm6]	C	G	7.190e^-5	0.442	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	7.198e^-5	0.442	INTERGENIC
3L	6576108	3L_6576108_SNP [dm3] 3L_6583008_SNP [dm6]	G	A	7.218e^-5	0.442	INTRON CG18769 & 1 other
3L	3755737	3L_3755737_DEL [dm3] 3L_3755737_DEL [dm6]	TATATGT	T	7.313e^-5	0.442	UPSTREAM ppk27 INTRON CG32264
3R	12712664	3R_12712664_SNP [dm3] 3R_16886942_SNP [dm6]	C	G	7.317e^-5	0.442	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	25338090	3R_25338090_SNP [dm3] 3R_29512368_SNP [dm6]	C	A	7.337e^-5	0.442	INTERGENIC
3R	7114083	3R_7114083_SNP [dm3] 3R_11288361_SNP [dm6]	C	G	7.350e^-5	0.442	INTRON CR31386
3R	10187066	3R_10187066_SNP [dm3] 3R_14361344_SNP [dm6]	T	G	7.372e^-5	0.442	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3756352	3L_3756352_SNP [dm3] 3L_3756352_SNP [dm6]	G	C	7.387e^-5	0.442	INTRON CG32264	TF binding site mE1_TFBS_Trl
3L	9328572	3L_9328572_SNP [dm3] 3L_9335472_SNP [dm6]	C	T	7.405e^-5	0.442	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	12106971	2L_12106971_SNP [dm3] 2L_12106971_SNP [dm6]	G	T	7.452e^-5	0.442	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
X	12008094	X_12008094_SNP [dm3] X_12114061_SNP [dm6]	C	T	7.473e^-5	0.442	DOWNSTREAM CG2750 INTRON CR43960 & 1 other
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	7.473e^-5	0.442	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5603585	3L_5603585_SNP [dm3] 3L_5610485_SNP [dm6]	T	G	7.478e^-5	0.442	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	8867779	3R_8867779_SNP [dm3] 3R_13042057_SNP [dm6]	G	T	7.485e^-5	0.442	START_GAINED CG11670 UTR_5_PRIME CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad
3R	8885665	3R_8885665_SNP [dm3] 3R_13059943_SNP [dm6]	A	G	7.488e^-5	0.442	INTRON sim	TF binding site BDTNP1_TFBS_prd
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	7.585e^-5	0.442	INTRON salm
3R	8701601	3R_8701601_SNP [dm3] 3R_12875879_SNP [dm6]	G	A	7.604e^-5	0.442	INTERGENIC
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	7.612e^-5	0.442	INTRON dpr10
3R	7760866	3R_7760866_SNP [dm3] 3R_11935144_SNP [dm6]	G	A	7.627e^-5	0.442	INTRON Cad87A
2L	11426399	2L_11426399_DEL [dm3] 2L_11426399_DEL [dm6]	TT	T	7.643e^-5	0.442	INTERGENIC
3R	12712730	3R_12712730_DEL [dm3] 3R_16887008_DEL [dm6]	AG	A	7.652e^-5	0.442	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	12712735	3R_12712735_SNP [dm3] 3R_16887013_SNP [dm6]	G	A	7.652e^-5	0.442	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	16854539	3R_16854539_SNP [dm3] 3R_21028817_SNP [dm6]	A	G	7.715e^-5	0.444	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	7.749e^-5	0.444	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7810180	3R_7810180_SNP [dm3] 3R_11984458_SNP [dm6]	C	T	7.767e^-5	0.444	SYNONYMOUS_CODING CG3397 DOWNSTREAM mfas	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12759316	3R_12759316_SNP [dm3] 3R_16933594_SNP [dm6]	C	T	7.808e^-5	0.445	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	6879881	X_6879881_SNP [dm3] X_6985848_SNP [dm6]	A	G	7.898e^-5	0.448	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	3548425	3L_3548425_SNP [dm3] 3L_3548425_SNP [dm6]	A	G	7.912e^-5	0.448	INTRON Eip63E
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	7.942e^-5	0.448	SYNONYMOUS_CODING NaPi-T
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	7.994e^-5	0.448	UPSTREAM hoe1 INTRON hoe1
3R	8777175	3R_8777175_SNP [dm3] 3R_12951453_SNP [dm6]	G	A	8.002e^-5	0.448	INTRON grsm
2L	9809585	2L_9809585_SNP [dm3] 2L_9809585_SNP [dm6]	C	T	8.008e^-5	0.448	INTRON nAChRalpha6
3L	4080538	3L_4080538_SNP [dm3] 3L_4080538_SNP [dm6]	C	A	8.054e^-5	0.448	INTRON Gad1
X	18971673	X_18971673_SNP [dm3] X_19077640_SNP [dm6]	A	T	8.080e^-5	0.448	UPSTREAM CG7406 INTERGENIC
3R	8699331	3R_8699331_SNP [dm3] 3R_12873609_SNP [dm6]	A	G	8.085e^-5	0.448	INTERGENIC
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	8.096e^-5	0.448	INTRON salm
3R	8868845	3R_8868845_SNP [dm3] 3R_13043123_SNP [dm6]	A	G	8.135e^-5	0.448	UPSTREAM snk INTRON CG11670
2R	6078447	2R_6078447_SNP [dm3] 2R_10190942_SNP [dm6]	A	T	8.189e^-5	0.448	INTRON KCNQ
2L	6575934	2L_6575934_SNP [dm3] 2L_6575934_SNP [dm6]	A	T	8.258e^-5	0.448	SYNONYMOUS_CODING CG11319
2L	11192949	2L_11192949_SNP [dm3] 2L_11192949_SNP [dm6]	A	C	8.282e^-5	0.448	INTRON Ca-beta
2R	6078408	2R_6078408_SNP [dm3] 2R_10190903_SNP [dm6]	T	C	8.291e^-5	0.448	INTRON KCNQ
3L	11266069	3L_11266069_SNP [dm3] 3L_11272969_SNP [dm6]	T	G	8.298e^-5	0.448	DOWNSTREAM CR44720 INTERGENIC
2R	11604008	2R_11604008_SNP [dm3] 2R_15716503_SNP [dm6]	C	G	8.304e^-5	0.448	INTERGENIC
2L	12555208	2L_12555208_SNP [dm3] 2L_12555208_SNP [dm6]	G	A	8.330e^-5	0.448	INTERGENIC
2L	11447295	2L_11447295_INS [dm3] 2L_11447295_INS [dm6]	G	GG	8.334e^-5	0.448	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5603425	3L_5603425_SNP [dm3] 3L_5610325_SNP [dm6]	A	G	8.335e^-5	0.448	INTERGENIC
3R	13087936	3R_13087936_SNP [dm3] 3R_17262214_SNP [dm6]	A	G	8.377e^-5	0.449	INTRON beat-IIb
3L	6279074	3L_6279074_SNP [dm3] 3L_6285974_SNP [dm6]	G	A	8.412e^-5	0.45	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16145866	3R_16145866_SNP [dm3] 3R_20320144_SNP [dm6]	A	T	8.475e^-5	0.452	INTRON CG42668
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	8.566e^-5	0.455	INTRON NaPi-T
2R	6078448	2R_6078448_SNP [dm3] 2R_10190943_SNP [dm6]	A	T	8.646e^-5	0.456	INTRON KCNQ
3R	24893549	3R_24893549_DEL [dm3] 3R_29067827_DEL [dm6]	TTAT	A	8.669e^-5	0.456	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5946368	3L_5946368_SNP [dm3] 3L_5953268_SNP [dm6]	C	G	8.689e^-5	0.456	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8872275	3R_8872275_SNP [dm3] 3R_13046553_SNP [dm6]	C	A	8.709e^-5	0.456	SYNONYMOUS_CODING Hsc70-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2665905	2L_2665905_SNP [dm3] 2L_2665905_SNP [dm6]	G	C	8.756e^-5	0.456	NON_SYNONYMOUS_CODING CG9879
3R	8888516	3R_8888516_DEL [dm3] 3R_13062794_DEL [dm6]	TTT	T	8.760e^-5	0.456	INTRON sim
2R	12777826	2R_12777826_SNP [dm3] 2R_16890321_SNP [dm6]	G	C	8.776e^-5	0.456	INTRON CG8910
3L	6363060	3L_6363060_SNP [dm3] 3L_6369960_SNP [dm6]	G	T	8.778e^-5	0.456	DOWNSTREAM CR45419 INTERGENIC
2L	11442828	2L_11442828_INS [dm3] 2L_11442828_INS [dm6]	A	AATTGAAATTATGCAC...	8.794e^-5	0.456	INTRON salm
3R	23442945	3R_23442945_SNP [dm3] 3R_27617223_SNP [dm6]	C	T	8.877e^-5	0.458	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	8.910e^-5	0.458	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
3R	7732659	3R_7732659_SNP [dm3] 3R_11906937_SNP [dm6]	A	G	8.921e^-5	0.458	INTRON Cad87A
3R	8703650	3R_8703650_SNP [dm3] 3R_12877928_SNP [dm6]	A	G	8.933e^-5	0.458	INTERGENIC
3R	19990372	3R_19990372_SNP [dm3] 3R_24164650_SNP [dm6]	G	A	8.983e^-5	0.459	SYNONYMOUS_CODING Apc2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	8194981	3R_8194981_DEL [dm3] 3R_12369259_DEL [dm6]	ACTGAACGGAATTCGAAGAG...	A	9.034e^-5	0.46	UTR_5_PRIME GstD1 UPSTREAM GstD1 INTRAGENIC GstD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	9.070e^-5	0.46	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	8890447	3R_8890447_DEL [dm3] 3R_13064725_DEL [dm6]	GCCC	G	9.098e^-5	0.46	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8868030	3R_8868030_SNP [dm3] 3R_13042308_SNP [dm6]	T	A	9.111e^-5	0.46	UPSTREAM snk INTRON snk & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	8890435	3R_8890435_SNP [dm3] 3R_13064713_SNP [dm6]	C	T	9.123e^-5	0.46	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	7853617	3R_7853617_SNP [dm3] 3R_12027895_SNP [dm6]	G	A	9.239e^-5	0.465	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
3L	18191886	3L_18191886_SNP [dm3] 3L_18198786_SNP [dm6]	C	G	9.284e^-5	0.466	INTERGENIC
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	9.328e^-5	0.467	UPSTREAM CG3306 & 1 other INTERGENIC
2L	11192942	2L_11192942_SNP [dm3] 2L_11192942_SNP [dm6]	A	G	9.428e^-5	0.469	INTRON Ca-beta
3L	13188214	3L_13188214_SNP [dm3] 3L_13195114_SNP [dm6]	A	G	9.444e^-5	0.469	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	9.451e^-5	0.469	INTRON Cad87A
2R	11609424	2R_11609424_DEL [dm3] 2R_15721919_DEL [dm6]	CC	C	9.476e^-5	0.469	INTERGENIC
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	9.517e^-5	0.469	DOWNSTREAM CG33098 INTRON CG34402
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	9.576e^-5	0.469	UTR_3_PRIME CG34351
3R	14406245	3R_14406245_SNP [dm3] 3R_18580523_SNP [dm6]	C	T	9.576e^-5	0.469	INTRON fray & 1 other
3R	8889075	3R_8889075_SNP [dm3] 3R_13063353_SNP [dm6]	G	A	9.582e^-5	0.469	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	14503004	3R_14503004_SNP [dm3] 3R_18677282_SNP [dm6]	A	G	9.665e^-5	0.469	SYNONYMOUS_CODING CG7705 UPSTREAM CG7706	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3755942	3L_3755942_INS [dm3] 3L_3755942_INS [dm6]	A	ATTCACA	9.667e^-5	0.469	UPSTREAM ppk27 INTRON CG32264
2R	13446981	2R_13446981_SNP [dm3] 2R_17559476_SNP [dm6]	T	A	9.674e^-5	0.469	INTRON Klp54D
3R	8703655	3R_8703655_SNP [dm3] 3R_12877933_SNP [dm6]	A	C	9.693e^-5	0.469	INTERGENIC
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	9.704e^-5	0.469	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
2R	19265065	2R_19265065_SNP [dm3] 2R_23377542_SNP [dm6]	T	C	9.765e^-5	0.469	UPSTREAM Golgin245 DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8890604	3R_8890604_DEL [dm3] 3R_13064882_DEL [dm6]	AC	A	9.782e^-5	0.469	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	9.785e^-5	0.469	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3R	2175409	3R_2175409_SNP [dm3] 3R_6349687_SNP [dm6]	T	C	9.836e^-5	0.471	NON_SYNONYMOUS_CODING Hr83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5603543	3L_5603543_DEL [dm3] 3L_5610443_DEL [dm6]	AGA	A	9.950e^-5	0.473	INTERGENIC
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	9.953e^-5	0.473	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	8361127	3R_8361127_SNP [dm3] 3R_12535405_SNP [dm6]	A	G	9.954e^-5	0.473	INTRON Octbeta3R
3R	8642367	3R_8642367_SNP [dm3] 3R_12816645_SNP [dm6]	G	A	1.000e^-4	0.474	INTRON CG31345
3R	7798413	3R_7798413_SNP [dm3] 3R_11972691_SNP [dm6]	C	T	1.005e^-4	0.474	SYNONYMOUS_CODING GC2 DOWNSTREAM Tango9
3L	939423	3L_939423_SNP [dm3] 3L_939423_SNP [dm6]	G	C	1.006e^-4	0.474	INTRON Glut1
3R	12759302	3R_12759302_SNP [dm3] 3R_16933580_SNP [dm6]	A	G	1.010e^-4	0.474	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	8741405	3R_8741405_SNP [dm3] 3R_12915683_SNP [dm6]	A	G	1.013e^-4	0.474	UPSTREAM beat-Vb INTERGENIC
2R	16950014	2R_16950014_SNP [dm3] 2R_21062509_SNP [dm6]	G	A	1.014e^-4	0.474	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18916676	3L_18916676_SNP [dm3] 3L_18923576_SNP [dm6]	C	A	1.019e^-4	0.474	UTR_3_PRIME CG32204	TF binding site mE1_TFBS_chinmo
3R	8893044	3R_8893044_SNP [dm3] 3R_13067322_SNP [dm6]	A	T	1.020e^-4	0.474	INTRON sim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2937888	3R_2937888_SNP [dm3] 3R_7112166_SNP [dm6]	T	A	1.023e^-4	0.474	UPSTREAM Alh INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	14871654	2R_14871654_SNP [dm3] 2R_18984149_SNP [dm6]	A	G	1.023e^-4	0.474	INTERGENIC
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	1.028e^-4	0.474	INTRON grsm
3R	8877833	3R_8877833_DEL [dm3] 3R_13052111_DEL [dm6]	AA	A	1.029e^-4	0.474	UPSTREAM pic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13492264	2L_13492264_SNP [dm3] 2L_13492264_SNP [dm6]	A	G	1.031e^-4	0.474	INTRON CG42784
3R	8370522	3R_8370522_SNP [dm3] 3R_12544800_SNP [dm6]	C	T	1.041e^-4	0.474	INTRON Octbeta3R
X	18971679	X_18971679_SNP [dm3] X_19077646_SNP [dm6]	T	A	1.052e^-4	0.474	UPSTREAM CG7406 INTERGENIC
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	1.056e^-4	0.474	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	1595568	3L_1595568_SNP [dm3] 3L_1595568_SNP [dm6]	A	G	1.056e^-4	0.474	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10186677	3R_10186677_SNP [dm3] 3R_14360955_SNP [dm6]	T	C	1.057e^-4	0.474	SYNONYMOUS_CODING CG31320 INTRON NK7.1
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	1.062e^-4	0.474	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
2R	14020809	2R_14020809_SNP [dm3] 2R_18133304_SNP [dm6]	A	T	1.063e^-4	0.474	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	1.063e^-4	0.474	UTR_3_PRIME Ack DOWNSTREAM Chd64
X	8552596	X_8552596_SNP [dm3] X_8658563_SNP [dm6]	A	G	1.065e^-4	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6957296	3L_6957296_SNP [dm3] 3L_6964196_SNP [dm6]	A	T	1.065e^-4	0.474	INTRON sgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11604491	2R_11604491_SNP [dm3] 2R_15716986_SNP [dm6]	T	A	1.067e^-4	0.474	INTERGENIC
2L	11191025	2L_11191025_SNP [dm3] 2L_11191025_SNP [dm6]	A	G	1.071e^-4	0.474	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8867109	3R_8867109_SNP [dm3] 3R_13041387_SNP [dm6]	C	G	1.075e^-4	0.474	SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3R	23442946	3R_23442946_SNP [dm3] 3R_27617224_SNP [dm6]	A	C	1.076e^-4	0.474	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2R	5018429	2R_5018429_SNP [dm3] 2R_9130924_SNP [dm6]	T	A	1.076e^-4	0.474	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	1.076e^-4	0.474	DOWNSTREAM ntc INTRON CG32264
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	1.080e^-4	0.474	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3R	8724424	3R_8724424_SNP [dm3] 3R_12898702_SNP [dm6]	G	T	1.083e^-4	0.474	INTERGENIC
3R	8455689	3R_8455689_SNP [dm3] 3R_12629967_SNP [dm6]	C	T	1.086e^-4	0.474	UTR_3_PRIME Snx3 UPSTREAM Not10	TF binding site BDTNP1_TFBS_dl
3L	9921576	3L_9921576_SNP [dm3] 3L_9928476_SNP [dm6]	C	T	1.087e^-4	0.474	INTRON CG34356
2L	11194445	2L_11194445_SNP [dm3] 2L_11194445_SNP [dm6]	G	T	1.089e^-4	0.474	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	1.092e^-4	0.474	INTRON beat-Vc
2L	12117522	2L_12117522_SNP [dm3] 2L_12117522_SNP [dm6]	C	T	1.093e^-4	0.474	INTRON CG17211
3R	7487492	3R_7487492_SNP [dm3] 3R_11661770_SNP [dm6]	A	G	1.095e^-4	0.474	INTRON CG42327
3R	9116742	3R_9116742_SNP [dm3] 3R_13291020_SNP [dm6]	T	C	1.095e^-4	0.474	NON_SYNONYMOUS_CODING Osi22	TF binding site mE1_TFBS_chinmo
3L	12005150	3L_12005150_SNP [dm3] 3L_12012050_SNP [dm6]	G	C	1.104e^-4	0.474	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14158393	2R_14158393_SNP [dm3] 2R_18270888_SNP [dm6]	A	G	1.106e^-4	0.474	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	1.109e^-4	0.474	INTRON CG42260
3L	8651707	3L_8651707_SNP [dm3] 3L_8658607_SNP [dm6]	C	G	1.110e^-4	0.474	INTERGENIC
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	1.111e^-4	0.474	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9052172	3R_9052172_SNP [dm3] 3R_13226450_SNP [dm6]	T	C	1.113e^-4	0.474	UTR_3_PRIME Ace INTRON Ace
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	1.116e^-4	0.474	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	752862	3L_752862_DEL [dm3] 3L_752862_DEL [dm6]	TGGAA	T	1.116e^-4	0.474	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5704346	3L_5704346_SNP [dm3] 3L_5711246_SNP [dm6]	G	A	1.116e^-4	0.474	INTRON sif
3R	8344006	3R_8344006_SNP [dm3] 3R_12518284_SNP [dm6]	A	G	1.123e^-4	0.475	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	12424997	3L_12424997_INS [dm3] 3L_12431897_INS [dm6]	T	TC	1.124e^-4	0.475	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	1.141e^-4	0.481	INTERGENIC
3R	8868681	3R_8868681_SNP [dm3] 3R_13042959_SNP [dm6]	C	T	1.143e^-4	0.481	SYNONYMOUS_CODING CG11670 UPSTREAM snk	TF binding site mE1_TFBS_cad
3R	10186934	3R_10186934_SNP [dm3] 3R_14361212_SNP [dm6]	A	C	1.145e^-4	0.481	START_GAINED CG31320 UTR_5_PRIME CG31320 INTRON NK7.1
3R	8865603	3R_8865603_SNP [dm3] 3R_13039881_SNP [dm6]	T	C	1.151e^-4	0.481	DOWNSTREAM snk INTRON CG11668
3L	1720402	3L_1720402_SNP [dm3] 3L_1720402_SNP [dm6]	A	G	1.161e^-4	0.481	DOWNSTREAM CG18171 INTRON drpr
3R	17519314	3R_17519314_SNP [dm3] 3R_21693592_SNP [dm6]	T	G	1.163e^-4	0.481	INTRON CG31176
2R	12203469	2R_12203469_SNP [dm3] 2R_16315964_SNP [dm6]	G	C	1.166e^-4	0.481	SPLICE_SITE_REGION Nox DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
X	16251281	X_16251281_SNP [dm3] X_16357248_SNP [dm6]	T	C	1.171e^-4	0.481	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	22592769	3L_22592769_SNP [dm3] 3L_22599669_SNP [dm6]	C	T	1.173e^-4	0.481	INTRON CG14459
2L	11446469	2L_11446469_SNP [dm3] 2L_11446469_SNP [dm6]	G	C	1.173e^-4	0.481	UPSTREAM salm INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8890432	3R_8890432_SNP [dm3] 3R_13064710_SNP [dm6]	T	A	1.173e^-4	0.481	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9607130	3L_9607130_DEL [dm3] 3L_9614030_DEL [dm6]	CA	T	1.175e^-4	0.481	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	12712729	3R_12712729_SNP [dm3] 3R_16887007_SNP [dm6]	A	C	1.176e^-4	0.481	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	14862787	3R_14862787_SNP [dm3] 3R_19037065_SNP [dm6]	T	C	1.177e^-4	0.481	INTRON CG6026	TF binding site mE1_TFBS_inv
3R	8897358	3R_8897358_SNP [dm3] 3R_13071636_SNP [dm6]	A	G	1.179e^-4	0.481	UPSTREAM sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15320704	2R_15320704_SNP [dm3] 2R_19433199_SNP [dm6]	A	C	1.181e^-4	0.481	NON_SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16251293	X_16251293_SNP [dm3] X_16357260_SNP [dm6]	T	C	1.182e^-4	0.481	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	22136664	X_22136664_SNP [dm3] X_22734828_SNP [dm6]	G	T	1.186e^-4	0.481	INTRON CR44997
2L	11450545	2L_11450545_SNP [dm3] 2L_11450545_SNP [dm6]	T	A	1.189e^-4	0.481	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11724878	3R_11724878_DEL [dm3] 3R_15899156_DEL [dm6]	GTCAAGC	G	1.190e^-4	0.481	INTRON glob1
3R	9961266	3R_9961266_SNP [dm3] 3R_14135544_SNP [dm6]	T	C	1.201e^-4	0.484	INTERGENIC
X	16251282	X_16251282_SNP [dm3] X_16357249_SNP [dm6]	T	G	1.203e^-4	0.484	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	6737267	3L_6737267_SNP [dm3] 3L_6744167_SNP [dm6]	T	C	1.207e^-4	0.485	DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2R	10948340	2R_10948340_SNP [dm3] 2R_15060835_SNP [dm6]	T	A	1.216e^-4	0.488	INTERGENIC
X	8719424	X_8719424_SNP [dm3] X_8825391_SNP [dm6]	C	T	1.224e^-4	0.488	INTERGENIC
3R	8893012	3R_8893012_SNP [dm3] 3R_13067290_SNP [dm6]	C	T	1.226e^-4	0.488	INTRON sim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8874777	3R_8874777_SNP [dm3] 3R_13049055_SNP [dm6]	T	A	1.229e^-4	0.488	DOWNSTREAM CG7966 INTRON CG31157
3L	412029	3L_412029_SNP [dm3] 3L_412029_SNP [dm6]	C	A	1.235e^-4	0.488	INTERGENIC
3R	8865513	3R_8865513_SNP [dm3] 3R_13039791_SNP [dm6]	A	G	1.236e^-4	0.488	SYNONYMOUS_CODING CG11668 DOWNSTREAM snk
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	1.241e^-4	0.488	INTRON H2.0
3R	7732676	3R_7732676_SNP [dm3] 3R_11906954_SNP [dm6]	A	G	1.242e^-4	0.488	INTRON Cad87A
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	1.243e^-4	0.488	INTRON grsm
3R	8867486	3R_8867486_SNP [dm3] 3R_13041764_SNP [dm6]	A	T	1.244e^-4	0.488	UPSTREAM CG11670 & 1 other INTRON snk
2L	12115417	2L_12115417_SNP [dm3] 2L_12115417_SNP [dm6]	T	A	1.248e^-4	0.488	INTRON CG17211
X	5113577	X_5113577_SNP [dm3] X_5219544_SNP [dm6]	A	G	1.250e^-4	0.488	INTRON CG15465 & 1 other
3R	21244230	3R_21244230_SNP [dm3] 3R_25418508_SNP [dm6]	T	A	1.251e^-4	0.488	INTRON Fur1
2L	11442751	2L_11442751_SNP [dm3] 2L_11442751_SNP [dm6]	T	C	1.253e^-4	0.488	INTRON salm
3R	8876694	3R_8876694_SNP [dm3] 3R_13050972_SNP [dm6]	A	C	1.254e^-4	0.488	INTRON CG7966
3R	6640823	3R_6640823_DEL [dm3] 3R_10815101_DEL [dm6]	GGCTCTAAG	G	1.264e^-4	0.491	UPSTREAM CG4089 & 1 other INTERGENIC
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	1.273e^-4	0.493	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	19121397	X_19121397_SNP [dm3] X_19227364_SNP [dm6]	A	T	1.276e^-4	0.493	INTRON CG7884	TF binding site mE1_TFBS_HSA
3R	9535593	3R_9535593_SNP [dm3] 3R_13709871_SNP [dm6]	T	G	1.282e^-4	0.494	DOWNSTREAM primo-2 & 2 others INTRON CG31469
3R	8721024	3R_8721024_SNP [dm3] 3R_12895302_SNP [dm6]	A	G	1.287e^-4	0.494	UPSTREAM CR33929 INTERGENIC
3R	8868746	3R_8868746_SNP [dm3] 3R_13043024_SNP [dm6]	A	T	1.288e^-4	0.494	UPSTREAM snk INTRON CG11670	TF binding site mE1_TFBS_cad
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	1.290e^-4	0.494	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	8793021	3R_8793021_SNP [dm3] 3R_12967299_SNP [dm6]	C	T	1.291e^-4	0.494	NON_SYNONYMOUS_CODING grsm UTR_5_PRIME CG14384 UPSTREAM CG14384 DOWNSTREAM CG7381
3L	11893038	3L_11893038_SNP [dm3] 3L_11899938_SNP [dm6]	C	T	1.296e^-4	0.494	INTRON CG44837 EXON CR43624
3R	7798152	3R_7798152_SNP [dm3] 3R_11972430_SNP [dm6]	G	T	1.296e^-4	0.494	SYNONYMOUS_CODING GC2 DOWNSTREAM GC1 & 1 other
3R	8460035	3R_8460035_SNP [dm3] 3R_12634313_SNP [dm6]	G	A	1.298e^-4	0.494	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
3R	9052248	3R_9052248_SNP [dm3] 3R_13226526_SNP [dm6]	A	T	1.302e^-4	0.494	UTR_3_PRIME Ace INTRON Ace
3L	14483182	3L_14483182_SNP [dm3] 3L_14490082_SNP [dm6]	T	C	1.305e^-4	0.494	INTRON bbg	TF binding site BDTNP1_TFBS_dl
2R	10862833	2R_10862833_INS [dm3] 2R_14975328_INS [dm6]	C	ACTGCACATCCAAATTATCA...	1.307e^-4	0.494	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7975272	3R_7975272_SNP [dm3] 3R_12149550_SNP [dm6]	C	T	1.308e^-4	0.494	INTRON dpr15
2R	9999894	2R_9999894_SNP [dm3] 2R_14112389_SNP [dm6]	C	A	1.313e^-4	0.494	INTRON Prosap
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	1.314e^-4	0.494	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
X	12013152	X_12013152_SNP [dm3] X_12119119_SNP [dm6]	A	G	1.316e^-4	0.494	INTRON Ten-a
2L	14423141	2L_14423141_SNP [dm3] 2L_14423141_SNP [dm6]	T	C	1.322e^-4	0.495	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3840195	2R_3840195_SNP [dm3] 2R_7952690_SNP [dm6]	T	C	1.326e^-4	0.495	INTRON CG14764
3R	8874548	3R_8874548_SNP [dm3] 3R_13048826_SNP [dm6]	T	C	1.333e^-4	0.495	NON_SYNONYMOUS_CODING CG31157 DOWNSTREAM CG7966
X	8101361	X_8101361_SNP [dm3] X_8207328_SNP [dm6]	T	C	1.333e^-4	0.495	INTRON sdt
3R	10815239	3R_10815239_SNP [dm3] 3R_14989517_SNP [dm6]	G	C	1.334e^-4	0.495	INTERGENIC
3L	13056224	3L_13056224_SNP [dm3] 3L_13063124_SNP [dm6]	A	C	1.334e^-4	0.495	NON_SYNONYMOUS_CODING CG34429 DOWNSTREAM CG34428
X	16032172	X_16032172_SNP [dm3] X_16138139_SNP [dm6]	A	T	1.342e^-4	0.496	INTRON disco-r
2L	496322	2L_496322_SNP [dm3] 2L_496322_SNP [dm6]	C	T	1.352e^-4	0.498	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14694033	2L_14694033_SNP [dm3] 2L_14694033_SNP [dm6]	G	C	1.353e^-4	0.498	INTERGENIC
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	1.355e^-4	0.498	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
X	2991712	X_2991712_SNP [dm3] X_3097679_SNP [dm6]	T	C	1.360e^-4	0.499	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8890543	3R_8890543_DEL [dm3] 3R_13064821_DEL [dm6]	AAAAGCGCCTTAGCTTTATG...	T	1.362e^-4	0.499	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	11124579	3R_11124579_SNP [dm3] 3R_15298857_SNP [dm6]	G	T	1.366e^-4	0.499	INTRON Tm1
3R	6857725	3R_6857725_SNP [dm3] 3R_11032003_SNP [dm6]	A	G	1.367e^-4	0.499	INTRON CG34114
2R	12203479	2R_12203479_SNP [dm3] 2R_16315974_SNP [dm6]	T	C	1.372e^-4	0.499	DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
2R	18576660	2R_18576660_SNP [dm3] 2R_22689155_SNP [dm6]	G	C	1.373e^-4	0.499	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3251524	3L_3251524_SNP [dm3] 3L_3251524_SNP [dm6]	C	A	1.377e^-4	0.499	DOWNSTREAM mir-282 EXON CR43626
3R	13145347	3R_13145347_SNP [dm3] 3R_17319625_SNP [dm6]	A	G	1.379e^-4	0.499	DOWNSTREAM beat-IIa INTERGENIC
3R	12747590	3R_12747590_SNP [dm3] 3R_16921868_SNP [dm6]	A	T	1.385e^-4	0.501	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14205797	3L_14205797_SNP [dm3] 3L_14212697_SNP [dm6]	A	T	1.394e^-4	0.502	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	1.399e^-4	0.502	UPSTREAM CG3306 & 1 other INTERGENIC
3R	8890440	3R_8890440_SNP [dm3] 3R_13064718_SNP [dm6]	A	G	1.399e^-4	0.502	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4478083	2L_4478083_SNP [dm3] 2L_4478083_SNP [dm6]	T	C	1.400e^-4	0.502	UTR_3_PRIME dp
2L	14784057	2L_14784057_SNP [dm3] 2L_14784057_SNP [dm6]	C	T	1.402e^-4	0.502	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8760876	3R_8760876_SNP [dm3] 3R_12935154_SNP [dm6]	T	C	1.406e^-4	0.502	DOWNSTREAM beat-Vb INTERGENIC
3R	8976262	3R_8976262_SNP [dm3] 3R_13150540_SNP [dm6]	A	T	1.412e^-4	0.502	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	9081091	3L_9081091_SNP [dm3] 3L_9087991_SNP [dm6]	G	A	1.412e^-4	0.502	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8705486	3R_8705486_SNP [dm3] 3R_12879764_SNP [dm6]	A	T	1.415e^-4	0.502	INTERGENIC
X	19574387	X_19574387_INS [dm3] X_19680354_INS [dm6]	A	AA	1.417e^-4	0.502	INTRON dome	regulatory region REDfly_CRMs
X	11227495	X_11227495_SNP [dm3] X_11333462_SNP [dm6]	C	T	1.419e^-4	0.502	SYNONYMOUS_CODING CG1657 DOWNSTREAM Kap3	TF binding site mE1_TFBS_cad
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	1.431e^-4	0.503	SYNONYMOUS_CODING Best2
2R	13284012	2R_13284012_SNP [dm3] 2R_17396507_SNP [dm6]	C	A	1.433e^-4	0.503	INTRON Sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	1.437e^-4	0.503	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14512968	3L_14512968_SNP [dm3] 3L_14519868_SNP [dm6]	A	G	1.438e^-4	0.503	SYNONYMOUS_CODING CG4613 INTRON bbg
2L	11889601	2L_11889601_SNP [dm3] 2L_11889601_SNP [dm6]	C	A	1.440e^-4	0.503	INTRON Pde1c
X	8719437	X_8719437_SNP [dm3] X_8825404_SNP [dm6]	A	T	1.442e^-4	0.503	INTERGENIC
3R	7800347	3R_7800347_SNP [dm3] 3R_11974625_SNP [dm6]	A	G	1.450e^-4	0.503	UTR_5_PRIME Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14512910	3L_14512910_DEL [dm3] 3L_14519810_DEL [dm6]	CAAATAAA	T	1.454e^-4	0.503	UTR_3_PRIME CG4613 INTRON bbg
2R	19711631	2R_19711631_SNP [dm3] 2R_23824108_SNP [dm6]	T	C	1.457e^-4	0.503	INTRON CG5549 & 1 other	TF binding site mE1_TFBS_chinmo
X	6782184	X_6782184_SNP [dm3] X_6888151_SNP [dm6]	T	A	1.458e^-4	0.503	INTERGENIC
3L	16330711	3L_16330711_SNP [dm3] 3L_16337611_SNP [dm6]	T	C	1.458e^-4	0.503	INTERGENIC
X	3451899	X_3451899_INS [dm3] X_3557866_INS [dm6]	A	AA	1.473e^-4	0.503	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_da
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	1.474e^-4	0.503	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2352982	3R_2352982_SNP [dm3] 3R_6527260_SNP [dm6]	G	T	1.474e^-4	0.503	UPSTREAM CG15185 INTERGENIC
3R	2323740	3R_2323740_SNP [dm3] 3R_6498018_SNP [dm6]	C	A	1.475e^-4	0.503	INTERGENIC
2R	18951166	2R_18951166_SNP [dm3] 2R_23063643_SNP [dm6]	C	T	1.477e^-4	0.503	SYNONYMOUS_CODING CG9890	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10792177	2R_10792177_SNP [dm3] 2R_14904672_SNP [dm6]	A	G	1.478e^-4	0.503	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13492247	2L_13492247_DEL [dm3] 2L_13492247_DEL [dm6]	TTAAAGAATT	T	1.481e^-4	0.503	INTRON CG42784
2L	13492321	2L_13492321_SNP [dm3] 2L_13492321_SNP [dm6]	A	T	1.481e^-4	0.503	INTRON CG42784
2R	10119174	2R_10119174_SNP [dm3] 2R_14231669_SNP [dm6]	C	A	1.481e^-4	0.503	SYNONYMOUS_CODING Opa1 UTR_3_PRIME Opa1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	1.485e^-4	0.503	UTR_3_PRIME plum
X	6112479	X_6112479_SNP [dm3] X_6218446_SNP [dm6]	T	A	1.486e^-4	0.503	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25518976	3R_25518976_SNP [dm3] 3R_29693254_SNP [dm6]	A	G	1.487e^-4	0.503	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	1.490e^-4	0.503	INTERGENIC
X	2992422	X_2992422_SNP [dm3] X_3098389_SNP [dm6]	A	T	1.495e^-4	0.503	INTRON kirre	regulatory region REDfly_CRMs
2R	5829932	2R_5829932_SNP [dm3] 2R_9942427_SNP [dm6]	A	T	1.496e^-4	0.503	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	11605250	2R_11605250_SNP [dm3] 2R_15717745_SNP [dm6]	C	A	1.496e^-4	0.503	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9964373	3L_9964373_SNP [dm3] 3L_9971273_SNP [dm6]	C	T	1.507e^-4	0.503	SYNONYMOUS_CODING CG6674 DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	1.509e^-4	0.503	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8976346	3R_8976346_SNP [dm3] 3R_13150624_SNP [dm6]	C	T	1.511e^-4	0.503	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	5603539	3L_5603539_DEL [dm3] 3L_5610439_DEL [dm6]	CA	C	1.516e^-4	0.503	INTERGENIC
3R	12744085	3R_12744085_SNP [dm3] 3R_16918363_SNP [dm6]	T	A	1.519e^-4	0.503	INTRON iab-8	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	19073400	2R_19073400_SNP [dm3] 2R_23185877_SNP [dm6]	G	A	1.520e^-4	0.503	DOWNSTREAM CG13539 INTRON CG34371
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	1.522e^-4	0.503	INTRON Cad87A
3R	8866859	3R_8866859_SNP [dm3] 3R_13041137_SNP [dm6]	G	A	1.522e^-4	0.503	UPSTREAM CG11670 DOWNSTREAM CG11668 INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	1.522e^-4	0.503	INTRON par-1
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	1.524e^-4	0.503	DOWNSTREAM CR44941 INTERGENIC
3R	12747286	3R_12747286_SNP [dm3] 3R_16921564_SNP [dm6]	G	A	1.527e^-4	0.503	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10960337	2L_10960337_SNP [dm3] 2L_10960337_SNP [dm6]	C	T	1.529e^-4	0.503	INTRON dpr2
3R	6752135	3R_6752135_SNP [dm3] 3R_10926413_SNP [dm6]	C	A	1.532e^-4	0.503	INTERGENIC
3L	2621662	3L_2621662_SNP [dm3] 3L_2621662_SNP [dm6]	C	A	1.533e^-4	0.503	INTRON Pxn
3R	8698403	3R_8698403_SNP [dm3] 3R_12872681_SNP [dm6]	C	A	1.537e^-4	0.503	INTERGENIC
3R	10138971	3R_10138971_SNP [dm3] 3R_14313249_SNP [dm6]	G	A	1.538e^-4	0.503	SYNONYMOUS_CODING CG31321
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	1.542e^-4	0.503	INTERGENIC
3R	8376432	3R_8376432_SNP [dm3] 3R_12550710_SNP [dm6]	T	C	1.543e^-4	0.503	UTR_3_PRIME Octbeta2R DOWNSTREAM mir-284
3R	9059786	3R_9059786_SNP [dm3] 3R_13234064_SNP [dm6]	G	C	1.544e^-4	0.503	INTRON Ace
3R	8867541	3R_8867541_SNP [dm3] 3R_13041819_SNP [dm6]	C	A	1.562e^-4	0.508	UPSTREAM CG11670 & 1 other INTRON snk
3R	8194980	3R_8194980_SNP [dm3] 3R_12369258_SNP [dm6]	C	T	1.566e^-4	0.508	UTR_5_PRIME GstD1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17020895	3L_17020895_SNP [dm3] 3L_17027795_SNP [dm6]	T	C	1.572e^-4	0.509	DOWNSTREAM Fit2 INTRON CG7730
3L	9883879	3L_9883879_SNP [dm3] 3L_9890779_SNP [dm6]	A	C	1.575e^-4	0.509	INTRON CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19307794	X_19307794_SNP [dm3] X_19413761_SNP [dm6]	G	A	1.579e^-4	0.509	INTRON kek5
3R	20963250	3R_20963250_SNP [dm3] 3R_25137528_SNP [dm6]	G	C	1.588e^-4	0.509	UPSTREAM danr DOWNSTREAM Bili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3522171	2L_3522171_SNP [dm3] 2L_3522171_SNP [dm6]	A	G	1.596e^-4	0.509	SYNONYMOUS_CODING CG8851 DOWNSTREAM Sr-CIV	TF binding site mE1_TFBS_cad
3L	2365433	3L_2365433_SNP [dm3] 3L_2365433_SNP [dm6]	T	C	1.598e^-4	0.509	INTERGENIC
2L	1630520	2L_1630520_SNP [dm3] 2L_1630520_SNP [dm6]	T	C	1.602e^-4	0.509	INTERGENIC
3L	16953219	3L_16953219_SNP [dm3] 3L_16960119_SNP [dm6]	C	T	1.604e^-4	0.509	INTRON Nc73EF
3L	14513130	3L_14513130_SNP [dm3] 3L_14520030_SNP [dm6]	G	A	1.607e^-4	0.509	INTRON bbg & 1 other
3L	14513166	3L_14513166_SNP [dm3] 3L_14520066_SNP [dm6]	T	C	1.607e^-4	0.509	INTRON bbg & 1 other
3L	2363296	3L_2363296_SNP [dm3] 3L_2363296_SNP [dm6]	A	G	1.614e^-4	0.509	DOWNSTREAM CG13801 INTERGENIC
3R	8460305	3R_8460305_SNP [dm3] 3R_12634583_SNP [dm6]	G	T	1.614e^-4	0.509	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
3L	14073920	3L_14073920_SNP [dm3] 3L_14080820_SNP [dm6]	A	G	1.617e^-4	0.509	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2991844	X_2991844_SNP [dm3] X_3097811_SNP [dm6]	G	T	1.622e^-4	0.509	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	1.622e^-4	0.509	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
2L	12110584	2L_12110584_SNP [dm3] 2L_12110584_SNP [dm6]	T	A	1.623e^-4	0.509	UTR_3_PRIME Phae1 UPSTREAM Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	12549675	3L_12549675_SNP [dm3] 3L_12556575_SNP [dm6]	A	T	1.624e^-4	0.509	INTRON sowah
3L	8196494	3L_8196494_SNP [dm3] 3L_8203394_SNP [dm6]	G	A	1.624e^-4	0.509	UPSTREAM CG7366 DOWNSTREAM CG13679 INTERGENIC
2L	7266308	2L_7266308_SNP [dm3] 2L_7266308_SNP [dm6]	A	G	1.629e^-4	0.509	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
2R	11608971	2R_11608971_SNP [dm3] 2R_15721466_SNP [dm6]	C	G	1.629e^-4	0.509	INTERGENIC
2R	11609378	2R_11609378_SNP [dm3] 2R_15721873_SNP [dm6]	C	T	1.629e^-4	0.509	INTERGENIC
2R	11609519	2R_11609519_SNP [dm3] 2R_15722014_SNP [dm6]	G	A	1.629e^-4	0.509	INTERGENIC
3R	8890531	3R_8890531_SNP [dm3] 3R_13064809_SNP [dm6]	A	T	1.633e^-4	0.509	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15333765	2L_15333765_SNP [dm3] 2L_15333765_SNP [dm6]	G	T	1.645e^-4	0.509	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	1.647e^-4	0.509	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11436539	2L_11436539_SNP [dm3] 2L_11436539_SNP [dm6]	G	A	1.649e^-4	0.509	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12475274	3L_12475274_SNP [dm3] 3L_12482174_SNP [dm6]	G	A	1.651e^-4	0.509	UPSTREAM CG33725 INTRON CG10663
3R	12712737	3R_12712737_INS [dm3] 3R_16887015_INS [dm6]	T	TAG	1.653e^-4	0.509	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	1631137	2L_1631137_SNP [dm3] 2L_1631137_SNP [dm6]	T	G	1.659e^-4	0.509	INTERGENIC
3L	8033741	3L_8033741_SNP [dm3] 3L_8040641_SNP [dm6]	G	C	1.660e^-4	0.509	INTRON nmo
3L	5897180	3L_5897180_SNP [dm3] 3L_5904080_SNP [dm6]	A	C	1.661e^-4	0.509	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
2L	7522447	2L_7522447_SNP [dm3] 2L_7522447_SNP [dm6]	A	G	1.663e^-4	0.509	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	19013660	3L_19013660_SNP [dm3] 3L_19020560_SNP [dm6]	G	C	1.665e^-4	0.509	INTRON nkd
X	5328178	X_5328178_SNP [dm3] X_5434145_SNP [dm6]	G	A	1.665e^-4	0.509	INTRON CR44471
3R	8865916	3R_8865916_SNP [dm3] 3R_13040194_SNP [dm6]	T	A	1.670e^-4	0.509	UTR_3_PRIME snk DOWNSTREAM CG11668	TF binding site mE1_TFBS_cad
3R	20898816	3R_20898816_SNP [dm3] 3R_25073094_SNP [dm6]	A	G	1.671e^-4	0.509	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
X	10798126	X_10798126_SNP [dm3] X_10904093_SNP [dm6]	G	A	1.685e^-4	0.509	INTERGENIC
3R	8740503	3R_8740503_SNP [dm3] 3R_12914781_SNP [dm6]	G	A	1.691e^-4	0.509	INTERGENIC
3L	14573513	3L_14573513_SNP [dm3] 3L_14580413_SNP [dm6]	G	T	1.702e^-4	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14854111	2L_14854111_SNP [dm3] 2L_14854111_SNP [dm6]	G	T	1.706e^-4	0.509	INTERGENIC
2L	15531471	2L_15531471_INS [dm3] 2L_15531471_INS [dm6]	A	AAAA	1.708e^-4	0.509	INTERGENIC
3R	19573933	3R_19573933_SNP [dm3] 3R_23748211_SNP [dm6]	G	T	1.709e^-4	0.509	NON_SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
3R	7460795	3R_7460795_SNP [dm3] 3R_11635073_SNP [dm6]	C	T	1.713e^-4	0.509	SYNONYMOUS_CODING Csk
3L	1254004	3L_1254004_SNP [dm3] 3L_1254004_SNP [dm6]	A	C	1.713e^-4	0.509	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
2L	13492340	2L_13492340_SNP [dm3] 2L_13492340_SNP [dm6]	C	T	1.715e^-4	0.509	INTRON CG42784
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	1.716e^-4	0.509	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	1.716e^-4	0.509	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	1.716e^-4	0.509	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	1.716e^-4	0.509	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	1.716e^-4	0.509	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	1.716e^-4	0.509	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	1.716e^-4	0.509	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	1.716e^-4	0.509	SYNONYMOUS_CODING emb
3R	12713162	3R_12713162_SNP [dm3] 3R_16887440_SNP [dm6]	A	T	1.718e^-4	0.509	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6564637	3R_6564637_SNP [dm3] 3R_10738915_SNP [dm6]	A	C	1.719e^-4	0.509	INTRON TkR86C	TF binding site mE1_TFBS_cad
3L	1720447	3L_1720447_SNP [dm3] 3L_1720447_SNP [dm6]	C	T	1.722e^-4	0.509	DOWNSTREAM CG18171 INTRON drpr
2R	5031437	2R_5031437_SNP [dm3] 2R_9143932_SNP [dm6]	C	G	1.725e^-4	0.509	UPSTREAM Prp38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15531442	2L_15531442_SNP [dm3] 2L_15531442_SNP [dm6]	T	C	1.725e^-4	0.509	INTERGENIC
3R	20623510	3R_20623510_SNP [dm3] 3R_24797788_SNP [dm6]	A	G	1.733e^-4	0.509	UTR_3_PRIME Ets96B & 1 other
3R	8265543	3R_8265543_SNP [dm3] 3R_12439821_SNP [dm6]	A	C	1.737e^-4	0.509	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	19216172	2R_19216172_SNP [dm3] 2R_23328649_SNP [dm6]	T	A	1.741e^-4	0.509	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8759499	3R_8759499_SNP [dm3] 3R_12933777_SNP [dm6]	C	A	1.743e^-4	0.509	NON_SYNONYMOUS_CODING beat-Vb
2R	5031073	2R_5031073_SNP [dm3] 2R_9143568_SNP [dm6]	C	A	1.745e^-4	0.509	UPSTREAM Prp38 INTRON shrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	22031395	3R_22031395_SNP [dm3] 3R_26205673_SNP [dm6]	T	C	1.745e^-4	0.509	INTRON CR44320
3R	8744855	3R_8744855_SNP [dm3] 3R_12919133_SNP [dm6]	C	T	1.747e^-4	0.509	INTRON beat-Vb
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	1.747e^-4	0.509	INTERGENIC
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	1.752e^-4	0.509	INTERGENIC
2R	14964246	2R_14964246_SNP [dm3] 2R_19076741_SNP [dm6]	A	T	1.755e^-4	0.509	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
3L	10893212	3L_10893212_SNP [dm3] 3L_10900112_SNP [dm6]	G	A	1.756e^-4	0.509	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
3L	12475285	3L_12475285_SNP [dm3] 3L_12482185_SNP [dm6]	C	G	1.757e^-4	0.509	UPSTREAM CG33725 INTRON CG10663
3R	11587690	3R_11587690_SNP [dm3] 3R_15761968_SNP [dm6]	T	C	1.764e^-4	0.509	INTERGENIC
2R	12474615	2R_12474615_SNP [dm3] 2R_16587110_SNP [dm6]	T	A	1.766e^-4	0.509	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	8893006	3R_8893006_SNP [dm3] 3R_13067284_SNP [dm6]	C	A	1.775e^-4	0.511	INTRON sim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8286537	3R_8286537_SNP [dm3] 3R_12460815_SNP [dm6]	C	T	1.784e^-4	0.511	UPSTREAM CG5961 INTRON CG12267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5878479	3L_5878479_SNP [dm3] 3L_5885379_SNP [dm6]	A	G	1.785e^-4	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	1.786e^-4	0.511	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
3R	8702942	3R_8702942_SNP [dm3] 3R_12877220_SNP [dm6]	A	T	1.788e^-4	0.511	INTERGENIC
X	8292611	X_8292611_SNP [dm3] X_8398578_SNP [dm6]	C	G	1.794e^-4	0.511	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19633438	X_19633438_SNP [dm3] X_19739405_SNP [dm6]	C	G	1.797e^-4	0.511	UTR_3_PRIME CG14234
3R	12709049	3R_12709049_SNP [dm3] 3R_16883327_SNP [dm6]	G	A	1.800e^-4	0.511	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12102713	2L_12102713_SNP [dm3] 2L_12102713_SNP [dm6]	G	C	1.800e^-4	0.511	SYNONYMOUS_CODING Patsas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	7680575	2R_7680575_SNP [dm3] 2R_11793070_SNP [dm6]	A	G	1.802e^-4	0.511	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5603642	3L_5603642_SNP [dm3] 3L_5610542_SNP [dm6]	T	C	1.803e^-4	0.511	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10114403	2L_10114403_SNP [dm3] 2L_10114403_SNP [dm6]	C	T	1.804e^-4	0.511	INTRON CG44153 & 1 other
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	1.807e^-4	0.511	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12753398	3R_12753398_SNP [dm3] 3R_16927676_SNP [dm6]	T	C	1.811e^-4	0.511	UTR_3_PRIME Abd-B
3R	7967624	3R_7967624_SNP [dm3] 3R_12141902_SNP [dm6]	C	G	1.821e^-4	0.513	INTRON dpr15	TF binding site BDTNP1_TFBS_da
3R	9032994	3R_9032994_INS [dm3] 3R_13207272_INS [dm6]	C	CCTGGGAAATGGC...	1.822e^-4	0.513	INTERGENIC
3R	12712282	3R_12712282_SNP [dm3] 3R_16886560_SNP [dm6]	C	T	1.825e^-4	0.513	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	9000985	3R_9000985_SNP [dm3] 3R_13175263_SNP [dm6]	G	A	1.826e^-4	0.513	INTERGENIC
3R	12528593	3R_12528593_SNP [dm3] 3R_16702871_SNP [dm6]	A	G	1.828e^-4	0.513	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	8719532	3R_8719532_SNP [dm3] 3R_12893810_SNP [dm6]	T	C	1.832e^-4	0.513	DOWNSTREAM CR33929 & 1 other INTERGENIC
3L	4837874	3L_4837874_SNP [dm3] 3L_4837874_SNP [dm6]	C	A	1.843e^-4	0.515	UTR_3_PRIME CG13707
3L	2914899	3L_2914899_SNP [dm3] 3L_2914899_SNP [dm6]	G	A	1.859e^-4	0.515	DOWNSTREAM CG9970 INTRON Shab
3R	7732618	3R_7732618_SNP [dm3] 3R_11906896_SNP [dm6]	G	C	1.859e^-4	0.515	INTRON Cad87A
X	5113639	X_5113639_SNP [dm3] X_5219606_SNP [dm6]	C	T	1.859e^-4	0.515	INTRON CG15465 & 1 other
2L	11553642	2L_11553642_SNP [dm3] 2L_11553642_SNP [dm6]	C	T	1.863e^-4	0.515	INTERGENIC
2R	9791729	2R_9791729_DEL [dm3] 2R_13904224_DEL [dm6]	CAT	C	1.865e^-4	0.515	INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2936931	2L_2936931_SNP [dm3] 2L_2936931_SNP [dm6]	C	A	1.867e^-4	0.515	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5520106	X_5520106_SNP [dm3] X_5626073_SNP [dm6]	T	A	1.870e^-4	0.515	UTR_3_PRIME CG42492 DOWNSTREAM CG42492 & 1 other
2R	7622684	2R_7622684_INS [dm3] 2R_11735179_INS [dm6]	C	CACAAC	1.871e^-4	0.515	INTERGENIC
3R	10187237	3R_10187237_SNP [dm3] 3R_14361515_SNP [dm6]	A	G	1.871e^-4	0.515	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14863394	3R_14863394_SNP [dm3] 3R_19037672_SNP [dm6]	T	G	1.873e^-4	0.515	INTRON CG6026
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	1.873e^-4	0.515	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
X	12723987	X_12723987_SNP [dm3] X_12829954_SNP [dm6]	G	A	1.875e^-4	0.515	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
2R	12138495	2R_12138495_SNP [dm3] 2R_16250990_SNP [dm6]	G	T	1.877e^-4	0.515	INTRON CngA
3R	7732716	3R_7732716_SNP [dm3] 3R_11906994_SNP [dm6]	A	T	1.885e^-4	0.516	INTRON Cad87A
3R	8744143	3R_8744143_SNP [dm3] 3R_12918421_SNP [dm6]	G	T	1.888e^-4	0.516	INTRON beat-Vb
3L	2715961	3L_2715961_SNP [dm3] 3L_2715961_SNP [dm6]	T	G	1.891e^-4	0.516	INTERGENIC
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	1.891e^-4	0.516	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12555196	2L_12555196_SNP [dm3] 2L_12555196_SNP [dm6]	A	G	1.894e^-4	0.516	INTERGENIC
3R	7118429	3R_7118429_SNP [dm3] 3R_11292707_SNP [dm6]	A	T	1.899e^-4	0.516	INTRON CR31386
3R	7460755	3R_7460755_SNP [dm3] 3R_11635033_SNP [dm6]	T	A	1.904e^-4	0.516	INTRON Csk
3R	9059565	3R_9059565_SNP [dm3] 3R_13233843_SNP [dm6]	A	G	1.904e^-4	0.516	INTRON Ace
X	5374453	X_5374453_SNP [dm3] X_5480420_SNP [dm6]	A	C	1.916e^-4	0.516	INTRON SPR
3L	9607091	3L_9607091_SNP [dm3] 3L_9613991_SNP [dm6]	C	A	1.916e^-4	0.516	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9607107	3L_9607107_DEL [dm3] 3L_9614007_DEL [dm6]	TT	T	1.916e^-4	0.516	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	7210991	2L_7210991_SNP [dm3] 2L_7210991_SNP [dm6]	T	A	1.917e^-4	0.516	INTRON CG13784
3R	8702645	3R_8702645_SNP [dm3] 3R_12876923_SNP [dm6]	T	C	1.918e^-4	0.516	INTERGENIC
2L	11426345	2L_11426345_SNP [dm3] 2L_11426345_SNP [dm6]	G	T	1.923e^-4	0.517	INTERGENIC
3R	17066909	3R_17066909_SNP [dm3] 3R_21241187_SNP [dm6]	G	A	1.929e^-4	0.517	INTERGENIC	regulatory region REDfly_CRMs
3R	7800242	3R_7800242_SNP [dm3] 3R_11974520_SNP [dm6]	T	G	1.930e^-4	0.517	DOWNSTREAM CG10005 INTRON Tango9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6106736	2L_6106736_SNP [dm3] 2L_6106736_SNP [dm6]	G	A	1.936e^-4	0.517	INTRON stai
2L	11427499	2L_11427499_SNP [dm3] 2L_11427499_SNP [dm6]	A	G	1.942e^-4	0.517	INTERGENIC
3R	8872862	3R_8872862_SNP [dm3] 3R_13047140_SNP [dm6]	A	C	1.942e^-4	0.517	NON_SYNONYMOUS_CODING Hsc70-2 UPSTREAM CG31157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5853139	3L_5853139_SNP [dm3] 3L_5860039_SNP [dm6]	C	A	1.942e^-4	0.517	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	8742939	3R_8742939_DEL [dm3] 3R_12917217_DEL [dm6]	GCTTTTCG	G	1.944e^-4	0.517	INTRON beat-Vb
3R	10187071	3R_10187071_SNP [dm3] 3R_14361349_SNP [dm6]	C	A	1.956e^-4	0.518	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14284899	3R_14284899_SNP [dm3] 3R_18459177_SNP [dm6]	G	A	1.960e^-4	0.518	INTRON fru	TF binding site mE1_TFBS_inv
3R	8867143	3R_8867143_SNP [dm3] 3R_13041421_SNP [dm6]	T	C	1.960e^-4	0.518	NON_SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3R	7760213	3R_7760213_SNP [dm3] 3R_11934491_SNP [dm6]	C	A	1.963e^-4	0.518	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22512260	3R_22512260_SNP [dm3] 3R_26686538_SNP [dm6]	C	T	1.964e^-4	0.518	INTERGENIC
3R	8460216	3R_8460216_SNP [dm3] 3R_12634494_SNP [dm6]	A	G	1.974e^-4	0.518	NON_SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
3L	5888680	3L_5888680_DEL [dm3] 3L_5895580_DEL [dm6]	AAGTTTATA	A	1.976e^-4	0.518	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8890690	3R_8890690_SNP [dm3] 3R_13064968_SNP [dm6]	T	C	1.977e^-4	0.518	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1868869	3L_1868869_INS [dm3] 3L_1868869_INS [dm6]	T	TT	1.980e^-4	0.518	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	12199329	2L_12199329_SNP [dm3] 2L_12199329_SNP [dm6]	G	A	1.988e^-4	0.518	INTRON aret
3L	9869577	3L_9869577_SNP [dm3] 3L_9876477_SNP [dm6]	G	A	1.990e^-4	0.518	DOWNSTREAM CR45406 INTERGENIC
3R	6474322	3R_6474322_SNP [dm3] 3R_10648600_SNP [dm6]	A	T	1.992e^-4	0.518	INTERGENIC
3R	8867556	3R_8867556_SNP [dm3] 3R_13041834_SNP [dm6]	G	T	1.995e^-4	0.518	UPSTREAM CG11670 & 1 other INTRON snk
3R	19990723	3R_19990723_SNP [dm3] 3R_24165001_SNP [dm6]	C	T	1.996e^-4	0.518	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2163276	3R_2163276_SNP [dm3] 3R_6337554_SNP [dm6]	A	C	2.002e^-4	0.518	DOWNSTREAM Osi19 INTERGENIC
2L	6576203	2L_6576203_SNP [dm3] 2L_6576203_SNP [dm6]	C	T	2.005e^-4	0.518	INTRON CG11319
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	2.005e^-4	0.518	INTERGENIC
2L	14423136	2L_14423136_SNP [dm3] 2L_14423136_SNP [dm6]	A	G	2.005e^-4	0.518	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19236942	2R_19236942_SNP [dm3] 2R_23349419_SNP [dm6]	G	C	2.006e^-4	0.518	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6837749	3R_6837749_SNP [dm3] 3R_11012027_SNP [dm6]	G	C	2.010e^-4	0.518	SYNONYMOUS_CODING CG34114
2L	12080676	2L_12080676_SNP [dm3] 2L_12080676_SNP [dm6]	T	A	2.013e^-4	0.518	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	2.014e^-4	0.518	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9607243	3L_9607243_SNP [dm3] 3L_9614143_SNP [dm6]	A	G	2.017e^-4	0.518	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	9607256	3L_9607256_SNP [dm3] 3L_9614156_SNP [dm6]	G	T	2.017e^-4	0.518	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	2245193	3R_2245193_SNP [dm3] 3R_6419471_SNP [dm6]	T	C	2.020e^-4	0.518	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	2.021e^-4	0.518	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22006730	3R_22006730_SNP [dm3] 3R_26181008_SNP [dm6]	C	A	2.023e^-4	0.518	INTRON CG31323
3R	20319613	3R_20319613_SNP [dm3] 3R_24493891_SNP [dm6]	T	G	2.027e^-4	0.519	INTERGENIC
3R	12713186	3R_12713186_SNP [dm3] 3R_16887464_SNP [dm6]	A	T	2.039e^-4	0.52	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8612466	3R_8612466_SNP [dm3] 3R_12786744_SNP [dm6]	T	G	2.042e^-4	0.52	INTERGENIC
2L	13492326	2L_13492326_SNP [dm3] 2L_13492326_SNP [dm6]	T	A	2.047e^-4	0.52	INTRON CG42784
2R	10071218	2R_10071218_SNP [dm3] 2R_14183713_SNP [dm6]	T	A	2.048e^-4	0.52	DOWNSTREAM cg INTERGENIC
3L	937879	3L_937879_SNP [dm3] 3L_937879_SNP [dm6]	A	G	2.054e^-4	0.52	INTRON Glut1
3L	9607068	3L_9607068_SNP [dm3] 3L_9613968_SNP [dm6]	T	C	2.054e^-4	0.52	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8460221	3R_8460221_SNP [dm3] 3R_12634499_SNP [dm6]	T	C	2.063e^-4	0.52	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598	TF binding site mE1_TFBS_inv
2R	5829168	2R_5829168_SNP [dm3] 2R_9941663_SNP [dm6]	A	T	2.063e^-4	0.52	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	6670378	3L_6670378_SNP [dm3] 3L_6677278_SNP [dm6]	A	G	2.064e^-4	0.52	INTERGENIC
2L	8033585	2L_8033585_SNP [dm3] 2L_8033585_SNP [dm6]	C	G	2.068e^-4	0.52	INTRON CG7367 & 1 other
2R	12138504	2R_12138504_SNP [dm3] 2R_16250999_SNP [dm6]	T	G	2.071e^-4	0.52	INTRON CngA
2R	12138525	2R_12138525_SNP [dm3] 2R_16251020_SNP [dm6]	T	G	2.071e^-4	0.52	INTRON CngA
3R	8868245	3R_8868245_SNP [dm3] 3R_13042523_SNP [dm6]	C	A	2.073e^-4	0.52	SYNONYMOUS_CODING CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15054159	2R_15054159_SNP [dm3] 2R_19166654_SNP [dm6]	T	A	2.091e^-4	0.52	INTRON CG10737	TF binding site mE1_TFBS_Trl
2L	507635	2L_507635_SNP [dm3] 2L_507635_SNP [dm6]	A	C	2.091e^-4	0.52	INTRON ush
3L	1598754	3L_1598754_SNP [dm3] 3L_1598754_SNP [dm6]	C	T	2.093e^-4	0.52	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_chinmo
3R	7732699	3R_7732699_SNP [dm3] 3R_11906977_SNP [dm6]	C	T	2.095e^-4	0.52	INTRON Cad87A
X	17366918	X_17366918_SNP [dm3] X_17472885_SNP [dm6]	A	C	2.098e^-4	0.52	INTRON CG43658	TF binding site mE1_TFBS_cad
3R	8374182	3R_8374182_SNP [dm3] 3R_12548460_SNP [dm6]	C	T	2.103e^-4	0.52	UPSTREAM Octbeta3R INTERGENIC
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	2.104e^-4	0.52	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	2.108e^-4	0.52	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	19863022	3R_19863022_SNP [dm3] 3R_24037300_SNP [dm6]	G	A	2.109e^-4	0.52	SYNONYMOUS_CODING Miro UPSTREAM spas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12078105	2R_12078105_SNP [dm3] 2R_16190600_SNP [dm6]	T	C	2.113e^-4	0.52	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	494691	2L_494691_SNP [dm3] 2L_494691_SNP [dm6]	A	T	2.115e^-4	0.52	INTRON ush
3L	5610194	3L_5610194_SNP [dm3] 3L_5617094_SNP [dm6]	A	T	2.116e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1597209	3L_1597209_SNP [dm3] 3L_1597209_SNP [dm6]	C	T	2.120e^-4	0.52	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9316342	3L_9316342_SNP [dm3] 3L_9323242_SNP [dm6]	T	C	2.120e^-4	0.52	INTERGENIC
X	7129922	X_7129922_SNP [dm3] X_7235889_SNP [dm6]	T	C	2.120e^-4	0.52	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8265539	3R_8265539_SNP [dm3] 3R_12439817_SNP [dm6]	G	T	2.125e^-4	0.52	UPSTREAM CG17207 INTRON Desat1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	8197567	2R_8197567_SNP [dm3] 2R_12310062_SNP [dm6]	G	C	2.128e^-4	0.52	SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
2R	17592678	2R_17592678_SNP [dm3] 2R_21705173_SNP [dm6]	A	C	2.133e^-4	0.52	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8874780	3R_8874780_INS [dm3] 3R_13049058_INS [dm6]	A	ATAA	2.133e^-4	0.52	DOWNSTREAM CG7966 INTRON CG31157
3L	12425020	3L_12425020_SNP [dm3] 3L_12431920_SNP [dm6]	T	G	2.137e^-4	0.52	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18930613	3R_18930613_SNP [dm3] 3R_23104891_SNP [dm6]	T	C	2.137e^-4	0.52	INTRON CG13830
3R	9535738	3R_9535738_SNP [dm3] 3R_13710016_SNP [dm6]	T	A	2.138e^-4	0.52	UPSTREAM CG31469 DOWNSTREAM primo-2 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3R	8944714	3R_8944714_SNP [dm3] 3R_13118992_SNP [dm6]	T	G	2.140e^-4	0.52	INTRON timeout
2R	12138487	2R_12138487_SNP [dm3] 2R_16250982_SNP [dm6]	C	T	2.143e^-4	0.52	INTRON CngA
2R	10473364	2R_10473364_SNP [dm3] 2R_14585859_SNP [dm6]	C	T	2.148e^-4	0.52	UTR_3_PRIME ttv DOWNSTREAM ttv
3R	8897737	3R_8897737_SNP [dm3] 3R_13072015_SNP [dm6]	C	A	2.150e^-4	0.52	UPSTREAM sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5951239	3L_5951239_SNP [dm3] 3L_5958139_SNP [dm6]	C	G	2.159e^-4	0.52	INTERGENIC
3L	5853126	3L_5853126_SNP [dm3] 3L_5860026_SNP [dm6]	A	T	2.160e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	10119207	2R_10119207_SNP [dm3] 2R_14231702_SNP [dm6]	C	T	2.162e^-4	0.52	SYNONYMOUS_CODING Opa1 UTR_3_PRIME Opa1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5113091	X_5113091_SNP [dm3] X_5219058_SNP [dm6]	A	T	2.163e^-4	0.52	INTRON CG15465 & 1 other
3R	8868930	3R_8868930_SNP [dm3] 3R_13043208_SNP [dm6]	T	G	2.167e^-4	0.52	UPSTREAM snk & 1 other INTRON CG11670
3L	1600308	3L_1600308_DEL [dm3] 3L_1600308_DEL [dm6]	GCA	G	2.167e^-4	0.52	UTR_3_PRIME CG13917 DOWNSTREAM CG12104
2R	11610359	2R_11610359_SNP [dm3] 2R_15722854_SNP [dm6]	C	T	2.167e^-4	0.52	INTERGENIC
3R	8711935	3R_8711935_SNP [dm3] 3R_12886213_SNP [dm6]	T	A	2.168e^-4	0.52	INTERGENIC
2L	4977667	2L_4977667_SNP [dm3] 2L_4977667_SNP [dm6]	T	G	2.170e^-4	0.52	NON_SYNONYMOUS_CODING CG3792 UPSTREAM Gmd DOWNSTREAM CG8891	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	6078414	2R_6078414_SNP [dm3] 2R_10190909_SNP [dm6]	G	A	2.173e^-4	0.52	INTRON KCNQ
3R	7734002	3R_7734002_SNP [dm3] 3R_11908280_SNP [dm6]	A	C	2.176e^-4	0.52	INTRON Cad87A
3R	8896617	3R_8896617_DEL [dm3] 3R_13070895_DEL [dm6]	TT	T	2.178e^-4	0.52	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19265010	2R_19265010_SNP [dm3] 2R_23377487_SNP [dm6]	G	A	2.179e^-4	0.52	UPSTREAM Golgin245 DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24659989	3R_24659989_SNP [dm3] 3R_28834267_SNP [dm6]	G	A	2.180e^-4	0.52	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	11454725	2L_11454725_SNP [dm3] 2L_11454725_SNP [dm6]	G	A	2.188e^-4	0.52	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8869911	3R_8869911_SNP [dm3] 3R_13044189_SNP [dm6]	A	G	2.189e^-4	0.52	START_GAINED CG45122 UTR_5_PRIME CG45122 UPSTREAM Hsc70-2 DOWNSTREAM CG11670
3R	10131713	3R_10131713_SNP [dm3] 3R_14305991_SNP [dm6]	G	T	2.190e^-4	0.52	SYNONYMOUS_CODING su_Hw_
3L	9222985	3L_9222985_SNP [dm3] 3L_9229885_SNP [dm6]	T	C	2.191e^-4	0.52	INTERGENIC
2R	18696731	2R_18696731_SNP [dm3] 2R_22809226_SNP [dm6]	T	A	2.195e^-4	0.52	INTRON stl	TF binding site BDTNP1_TFBS_twi
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	2.197e^-4	0.52	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2L	5393968	2L_5393968_SNP [dm3] 2L_5393968_SNP [dm6]	G	A	2.201e^-4	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11426370	2L_11426370_SNP [dm3] 2L_11426370_SNP [dm6]	T	C	2.219e^-4	0.524	INTERGENIC
3R	8776947	3R_8776947_DEL [dm3] 3R_12951225_DEL [dm6]	GCGGACAACTCGGGGATGCA...	AAAAA	2.221e^-4	0.524	INTRON grsm
2R	10862940	2R_10862940_SNP [dm3] 2R_14975435_SNP [dm6]	A	T	2.225e^-4	0.524	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12425000	3L_12425000_SNP [dm3] 3L_12431900_SNP [dm6]	A	G	2.233e^-4	0.525	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8756935	3L_8756935_SNP [dm3] 3L_8763835_SNP [dm6]	C	G	2.239e^-4	0.525	INTRON Fhos
3L	3771658	3L_3771658_SNP [dm3] 3L_3771658_SNP [dm6]	T	C	2.241e^-4	0.525	INTRON CG32264
3R	13162442	3R_13162442_SNP [dm3] 3R_17336720_SNP [dm6]	A	C	2.241e^-4	0.525	INTRON beat-IIa
3L	13071744	3L_13071744_SNP [dm3] 3L_13078644_SNP [dm6]	T	C	2.241e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5876172	2R_5876172_DEL [dm3] 2R_9988667_DEL [dm6]	TCTCTTAAGTACT...	T	2.246e^-4	0.525	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	14406263	3R_14406263_INS [dm3] 3R_18580541_INS [dm6]	GA	ATC	2.251e^-4	0.525	INTRON fray & 1 other
2R	7296669	2R_7296669_SNP [dm3] 2R_11409164_SNP [dm6]	T	G	2.256e^-4	0.525	SYNONYMOUS_CODING CG30026 DOWNSTREAM CG34054	TF binding site mE1_TFBS_inv
2R	5018418	2R_5018418_SNP [dm3] 2R_9130913_SNP [dm6]	T	C	2.263e^-4	0.525	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8768381	3R_8768381_SNP [dm3] 3R_12942659_SNP [dm6]	T	A	2.276e^-4	0.525	INTERGENIC
3R	24893367	3R_24893367_SNP [dm3] 3R_29067645_SNP [dm6]	T	C	2.280e^-4	0.525	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4109655	3L_4109655_SNP [dm3] 3L_4109655_SNP [dm6]	G	T	2.288e^-4	0.525	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8255297	3R_8255297_SNP [dm3] 3R_12429575_SNP [dm6]	C	G	2.291e^-4	0.525	UTR_5_PRIME CG5245 UPSTREAM CG5641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	16521148	2R_16521148_SNP [dm3] 2R_20633643_SNP [dm6]	G	A	2.298e^-4	0.525	UPSTREAM Rcd6 DOWNSTREAM rig INTERGENIC
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	2.301e^-4	0.525	INTRON CadN
2R	16662131	2R_16662131_SNP [dm3] 2R_20774626_SNP [dm6]	A	C	2.303e^-4	0.525	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9507246	3L_9507246_SNP [dm3] 3L_9514146_SNP [dm6]	C	A	2.304e^-4	0.525	UTR_3_PRIME CG33700 UPSTREAM CG33702 & 1 other
X	6879912	X_6879912_SNP [dm3] X_6985879_SNP [dm6]	G	A	2.304e^-4	0.525	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	12203400	2R_12203400_SNP [dm3] 2R_16315895_SNP [dm6]	C	T	2.306e^-4	0.525	SYNONYMOUS_CODING Nox DOWNSTREAM CG8060	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	2.307e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12106117	2L_12106117_SNP [dm3] 2L_12106117_SNP [dm6]	C	T	2.309e^-4	0.525	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4722235	2L_4722235_SNP [dm3] 2L_4722235_SNP [dm6]	T	A	2.316e^-4	0.525	UTR_3_PRIME CG34351
3R	7776359	3R_7776359_SNP [dm3] 3R_11950637_SNP [dm6]	A	C	2.317e^-4	0.525	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	2.321e^-4	0.525	INTERGENIC
3R	13660682	3R_13660682_SNP [dm3] 3R_17834960_SNP [dm6]	T	C	2.323e^-4	0.525	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	16662109	2R_16662109_SNP [dm3] 2R_20774604_SNP [dm6]	T	C	2.324e^-4	0.525	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20064454	2R_20064454_SNP [dm3] 2R_24176931_SNP [dm6]	G	C	2.330e^-4	0.525	SYNONYMOUS_CODING Nop60B DOWNSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site mE1_TFBS_cad
2R	6081780	2R_6081780_DEL [dm3] 2R_10194275_DEL [dm6]	GG	T	2.333e^-4	0.525	INTERGENIC
2L	16164674	2L_16164674_SNP [dm3] 2L_16164674_SNP [dm6]	C	T	2.339e^-4	0.525	INTERGENIC
3R	26167317	3R_26167317_SNP [dm3] 3R_30341595_SNP [dm6]	A	G	2.341e^-4	0.525	INTRON hdc
3R	12537452	3R_12537452_SNP [dm3] 3R_16711730_SNP [dm6]	G	T	2.344e^-4	0.525	INTRON Ubx	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	2.347e^-4	0.525	UPSTREAM CG3306 & 1 other INTERGENIC
3L	8652977	3L_8652977_SNP [dm3] 3L_8659877_SNP [dm6]	T	A	2.360e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11889507	2L_11889507_SNP [dm3] 2L_11889507_SNP [dm6]	G	T	2.364e^-4	0.525	INTRON Pde1c
3R	20804324	3R_20804324_SNP [dm3] 3R_24978602_SNP [dm6]	G	C	2.365e^-4	0.525	INTERGENIC
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	2.366e^-4	0.525	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3L	5897178	3L_5897178_SNP [dm3] 3L_5904078_SNP [dm6]	T	G	2.367e^-4	0.525	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
2L	11442663	2L_11442663_SNP [dm3] 2L_11442663_SNP [dm6]	A	T	2.369e^-4	0.525	INTRON salm
2R	16102522	2R_16102522_SNP [dm3] 2R_20215017_SNP [dm6]	A	C	2.370e^-4	0.525	INTERGENIC
2L	12606344	2L_12606344_SNP [dm3] 2L_12606344_SNP [dm6]	G	A	2.375e^-4	0.525	INTRON nub	TF binding site BDTNP1_TFBS_da
3R	10187046	3R_10187046_SNP [dm3] 3R_14361324_SNP [dm6]	A	T	2.375e^-4	0.525	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA
2R	6078475	2R_6078475_SNP [dm3] 2R_10190970_SNP [dm6]	C	A	2.376e^-4	0.525	INTRON KCNQ
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	2.379e^-4	0.525	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.380e^-4	0.525	DOWNSTREAM CG18109 INTERGENIC
X	5121690	X_5121690_INS [dm3] X_5227657_INS [dm6]	C	CC	2.380e^-4	0.525	INTRON CG15465 & 1 other
3R	2221938	3R_2221938_SNP [dm3] 3R_6396216_SNP [dm6]	C	T	2.383e^-4	0.525	INTRON Dmtn
3L	14513375	3L_14513375_SNP [dm3] 3L_14520275_SNP [dm6]	G	A	2.387e^-4	0.525	SYNONYMOUS_CODING CG4613 INTRON bbg
2R	5038366	2R_5038366_SNP [dm3] 2R_9150861_SNP [dm6]	C	G	2.388e^-4	0.525	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
3R	8477900	3R_8477900_SNP [dm3] 3R_12652178_SNP [dm6]	C	A	2.393e^-4	0.525	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2L	12100786	2L_12100786_SNP [dm3] 2L_12100786_SNP [dm6]	T	A	2.399e^-4	0.525	UTR_3_PRIME Ced-12 & 1 other
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	2.399e^-4	0.525	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9105550	3R_9105550_SNP [dm3] 3R_13279828_SNP [dm6]	T	C	2.402e^-4	0.525	UTR_5_PRIME CG8630
3R	21013342	3R_21013342_SNP [dm3] 3R_25187620_SNP [dm6]	A	G	2.414e^-4	0.525	INTRON lobo & 1 other
3L	9328509	3L_9328509_SNP [dm3] 3L_9335409_SNP [dm6]	A	G	2.421e^-4	0.525	UPSTREAM PGRP-LA INTRON PGRP-LA
2L	13104342	2L_13104342_SNP [dm3] 2L_13104342_SNP [dm6]	C	T	2.423e^-4	0.525	UPSTREAM CR45461 INTERGENIC
3L	2716165	3L_2716165_SNP [dm3] 3L_2716165_SNP [dm6]	A	T	2.424e^-4	0.525	INTERGENIC
3R	19990789	3R_19990789_SNP [dm3] 3R_24165067_SNP [dm6]	T	C	2.426e^-4	0.525	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	2.427e^-4	0.525	UPSTREAM CG44403 INTRON CG10936
2L	9632931	2L_9632931_SNP [dm3] 2L_9632931_SNP [dm6]	A	T	2.428e^-4	0.525	INTERGENIC
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	2.441e^-4	0.525	INTRON Cad87A
3R	8764606	3R_8764606_SNP [dm3] 3R_12938884_SNP [dm6]	G	A	2.444e^-4	0.525	INTERGENIC
3R	8579630	3R_8579630_SNP [dm3] 3R_12753908_SNP [dm6]	G	A	2.451e^-4	0.525	INTRON beat-Vc
3L	20031320	3L_20031320_SNP [dm3] 3L_20038220_SNP [dm6]	C	G	2.451e^-4	0.525	INTERGENIC
3R	7729799	3R_7729799_SNP [dm3] 3R_11904077_SNP [dm6]	C	T	2.456e^-4	0.525	INTRON Cad87A
2R	10546694	2R_10546694_SNP [dm3] 2R_14659189_SNP [dm6]	A	G	2.460e^-4	0.525	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	2.462e^-4	0.525	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3R	17087206	3R_17087206_SNP [dm3] 3R_21261484_SNP [dm6]	A	C	2.467e^-4	0.525	INTRON ETHR
2R	18595500	2R_18595500_SNP [dm3] 2R_22707995_SNP [dm6]	T	C	2.470e^-4	0.525	NON_SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
3L	12010094	3L_12010094_SNP [dm3] 3L_12016994_SNP [dm6]	A	G	2.470e^-4	0.525	INTRON rols
2R	15127358	2R_15127358_SNP [dm3] 2R_19239853_SNP [dm6]	G	T	2.476e^-4	0.525	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	2.480e^-4	0.525	INTRON salm
3R	8283455	3R_8283455_SNP [dm3] 3R_12457733_SNP [dm6]	G	A	2.482e^-4	0.525	NON_SYNONYMOUS_CODING trus DOWNSTREAM CG5961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7788950	3R_7788950_SNP [dm3] 3R_11963228_SNP [dm6]	G	A	2.482e^-4	0.525	UTR_5_PRIME aur UPSTREAM CG3281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8779105	3R_8779105_SNP [dm3] 3R_12953383_SNP [dm6]	A	T	2.490e^-4	0.525	INTRON grsm
3L	2713501	3L_2713501_SNP [dm3] 3L_2713501_SNP [dm6]	G	A	2.490e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5627832	3L_5627832_SNP [dm3] 3L_5634732_SNP [dm6]	G	T	2.490e^-4	0.525	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12647011	2R_12647011_SNP [dm3] 2R_16759506_SNP [dm6]	T	G	2.491e^-4	0.525	SPLICE_SITE_REGION unc-104 INTRON unc-104
3R	8994351	3R_8994351_SNP [dm3] 3R_13168629_SNP [dm6]	T	C	2.491e^-4	0.525	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6859960	3L_6859960_SNP [dm3] 3L_6866860_SNP [dm6]	C	T	2.493e^-4	0.525	UPSTREAM CR45115 INTERGENIC
2L	9365052	2L_9365052_SNP [dm3] 2L_9365052_SNP [dm6]	T	G	2.494e^-4	0.525	DOWNSTREAM CR43404 INTERGENIC
3R	8286177	3R_8286177_INS [dm3] 3R_12460455_INS [dm6]	T	TT	2.501e^-4	0.525	UTR_5_PRIME CG12267 UPSTREAM CG12267 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6051271	2R_6051271_DEL [dm3] 2R_10163766_DEL [dm6]	TTTGCT	T	2.503e^-4	0.525	INTRON KCNQ
3R	14503447	3R_14503447_SNP [dm3] 3R_18677725_SNP [dm6]	C	A	2.504e^-4	0.525	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
2L	19013856	2L_19013856_SNP [dm3] 2L_19013856_SNP [dm6]	T	G	2.505e^-4	0.525	INTERGENIC
3L	1593414	3L_1593414_SNP [dm3] 3L_1593414_SNP [dm6]	A	T	2.505e^-4	0.525	UTR_5_PRIME CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11458556	2L_11458556_SNP [dm3] 2L_11458556_SNP [dm6]	A	C	2.506e^-4	0.525	INTERGENIC
3L	5610261	3L_5610261_SNP [dm3] 3L_5617161_SNP [dm6]	T	A	2.506e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15168411	2L_15168411_SNP [dm3] 2L_15168411_SNP [dm6]	C	T	2.510e^-4	0.525	INTRON CG4168
2R	19162977	2R_19162977_SNP [dm3] 2R_23275454_SNP [dm6]	G	C	2.516e^-4	0.525	START_GAINED ord UTR_5_PRIME ord
3L	5603432	3L_5603432_SNP [dm3] 3L_5610332_SNP [dm6]	G	A	2.516e^-4	0.525	INTERGENIC
3L	2359671	3L_2359671_SNP [dm3] 3L_2359671_SNP [dm6]	C	A	2.518e^-4	0.525	UPSTREAM CG13801 INTERGENIC
2R	3827797	2R_3827797_SNP [dm3] 2R_7940292_SNP [dm6]	T	A	2.522e^-4	0.525	UPSTREAM CG30380 INTRON CG30379	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	5627843	3L_5627843_SNP [dm3] 3L_5634743_SNP [dm6]	A	G	2.523e^-4	0.525	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6495253	2L_6495253_SNP [dm3] 2L_6495253_SNP [dm6]	C	G	2.523e^-4	0.525	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
X	7687675	X_7687675_SNP [dm3] X_7793642_SNP [dm6]	C	A	2.524e^-4	0.525	INTERGENIC
2R	10763259	2R_10763259_SNP [dm3] 2R_14875754_SNP [dm6]	A	G	2.527e^-4	0.525	UPSTREAM Cyp6a23 DOWNSTREAM Cyp6a17 INTERGENIC
2R	10763260	2R_10763260_SNP [dm3] 2R_14875755_SNP [dm6]	A	T	2.527e^-4	0.525	UPSTREAM Cyp6a23 DOWNSTREAM Cyp6a17 INTERGENIC
3L	2485293	3L_2485293_SNP [dm3] 3L_2485293_SNP [dm6]	T	C	2.533e^-4	0.525	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12646965	2R_12646965_SNP [dm3] 2R_16759460_SNP [dm6]	C	G	2.540e^-4	0.525	INTRON unc-104
X	18971619	X_18971619_SNP [dm3] X_19077586_SNP [dm6]	G	A	2.546e^-4	0.525	UPSTREAM CG7406 INTERGENIC
2R	1094500	2R_1094500_SNP [dm3] 2R_5206995_SNP [dm6]	T	G	2.546e^-4	0.525	INTRON Nipped-A	transposable element FlyBase
3R	12712707	3R_12712707_SNP [dm3] 3R_16886985_SNP [dm6]	T	C	2.548e^-4	0.525	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	19426685	2L_19426685_SNP [dm3] 2L_19426685_SNP [dm6]	G	A	2.551e^-4	0.525	UTR_5_PRIME CG16771 & 1 other UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12474609	2R_12474609_SNP [dm3] 2R_16587104_SNP [dm6]	T	C	2.556e^-4	0.525	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2L	14216800	2L_14216800_SNP [dm3] 2L_14216800_SNP [dm6]	G	C	2.556e^-4	0.525	INTRON Dyrk2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4977666	2L_4977666_SNP [dm3] 2L_4977666_SNP [dm6]	C	G	2.556e^-4	0.525	SYNONYMOUS_CODING CG3792 UPSTREAM Gmd DOWNSTREAM CG8891	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	6474640	3R_6474640_SNP [dm3] 3R_10648918_SNP [dm6]	G	T	2.557e^-4	0.525	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	2.562e^-4	0.525	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	9038276	3R_9038276_SNP [dm3] 3R_13212554_SNP [dm6]	T	A	2.565e^-4	0.525	INTRON CG8483
3R	25518523	3R_25518523_SNP [dm3] 3R_29692801_SNP [dm6]	G	A	2.565e^-4	0.525	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5853130	3L_5853130_SNP [dm3] 3L_5860030_SNP [dm6]	A	G	2.566e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	19341618	X_19341618_INS [dm3] X_19447585_INS [dm6]	T	TA	2.567e^-4	0.525	INTRON kek5
2R	14425360	2R_14425360_SNP [dm3] 2R_18537855_SNP [dm6]	C	T	2.567e^-4	0.525	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7243316	X_7243316_SNP [dm3] X_7349283_SNP [dm6]	T	C	2.568e^-4	0.525	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10072435	2R_10072435_SNP [dm3] 2R_14184930_SNP [dm6]	G	A	2.571e^-4	0.525	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4350301	2R_4350301_SNP [dm3] 2R_8462796_SNP [dm6]	A	T	2.572e^-4	0.525	START_GAINED Mal-A5 UTR_5_PRIME Mal-A5	TF binding site mE1_TFBS_Trl
2L	12115945	2L_12115945_SNP [dm3] 2L_12115945_SNP [dm6]	G	A	2.574e^-4	0.525	INTRON CG17211
3L	14205821	3L_14205821_SNP [dm3] 3L_14212721_SNP [dm6]	T	A	2.575e^-4	0.525	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	9781692	2R_9781692_SNP [dm3] 2R_13894187_SNP [dm6]	A	T	2.576e^-4	0.525	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1698340	2L_1698340_SNP [dm3] 2L_1698340_SNP [dm6]	T	A	2.580e^-4	0.525	UTR_3_PRIME chinmo DOWNSTREAM chinmo
2R	11756862	2R_11756862_SNP [dm3] 2R_15869357_SNP [dm6]	C	A	2.583e^-4	0.525	UPSTREAM Rif1 DOWNSTREAM sli INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5627892	3L_5627892_SNP [dm3] 3L_5634792_SNP [dm6]	A	T	2.584e^-4	0.525	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7210988	2L_7210988_SNP [dm3] 2L_7210988_SNP [dm6]	A	G	2.588e^-4	0.525	INTRON CG13784
3L	14573514	3L_14573514_SNP [dm3] 3L_14580414_SNP [dm6]	G	A	2.591e^-4	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12448636	2L_12448636_SNP [dm3] 2L_12448636_SNP [dm6]	A	G	2.595e^-4	0.525	UTR_5_PRIME Oatp33Eb UPSTREAM CG5421
2L	12106946	2L_12106946_SNP [dm3] 2L_12106946_SNP [dm6]	A	T	2.595e^-4	0.525	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	2.598e^-4	0.525	INTRON GC1
3R	13106462	3R_13106462_SNP [dm3] 3R_17280740_SNP [dm6]	C	G	2.598e^-4	0.525	INTERGENIC
2R	5050835	2R_5050835_SNP [dm3] 2R_9163330_SNP [dm6]	T	C	2.599e^-4	0.525	NON_SYNONYMOUS_CODING CG8046 SPLICE_SITE_REGION CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14020814	2R_14020814_SNP [dm3] 2R_18133309_SNP [dm6]	A	G	2.604e^-4	0.525	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	6576195	2L_6576195_INS [dm3] 2L_6576195_INS [dm6]	A	ACCACATTTGTTA...	2.604e^-4	0.525	INTRON CG11319
3R	8391205	3R_8391205_SNP [dm3] 3R_12565483_SNP [dm6]	G	T	2.607e^-4	0.525	INTRON Octbeta2R
3R	7761421	3R_7761421_DEL [dm3] 3R_11935699_DEL [dm6]	AGCATTTT	A	2.614e^-4	0.525	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8869262	3R_8869262_SNP [dm3] 3R_13043540_SNP [dm6]	C	T	2.614e^-4	0.525	SYNONYMOUS_CODING CG11670 UPSTREAM snk & 1 other
2R	7677216	2R_7677216_SNP [dm3] 2R_11789711_SNP [dm6]	A	T	2.616e^-4	0.525	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22934307	3R_22934307_SNP [dm3] 3R_27108585_SNP [dm6]	G	A	2.619e^-4	0.525	UTR_3_PRIME gb UPSTREAM CR45209
2R	11603938	2R_11603938_SNP [dm3] 2R_15716433_SNP [dm6]	C	T	2.620e^-4	0.525	INTERGENIC
2R	7570101	2R_7570101_SNP [dm3] 2R_11682596_SNP [dm6]	T	G	2.621e^-4	0.525	INTRON Buffy
3R	8867542	3R_8867542_SNP [dm3] 3R_13041820_SNP [dm6]	C	T	2.623e^-4	0.525	UPSTREAM CG11670 & 1 other INTRON snk
2R	17316003	2R_17316003_SNP [dm3] 2R_21428498_SNP [dm6]	A	T	2.626e^-4	0.525	INTRON Sdc	TF binding site BDTNP1_TFBS_sna
2L	5169453	2L_5169453_SNP [dm3] 2L_5169453_SNP [dm6]	T	A	2.633e^-4	0.525	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	2.636e^-4	0.525	INTRON Indy
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	2.641e^-4	0.525	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	2.644e^-4	0.525	INTRON fas
3R	17528540	3R_17528540_DEL [dm3] 3R_21702818_DEL [dm6]	ATCTGTA	A	2.649e^-4	0.525	INTRON CG31176
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	2.651e^-4	0.525	INTRON Octbeta3R
3R	8614566	3R_8614566_SNP [dm3] 3R_12788844_SNP [dm6]	T	C	2.654e^-4	0.525	INTERGENIC
3R	19592587	3R_19592587_SNP [dm3] 3R_23766865_SNP [dm6]	A	G	2.654e^-4	0.525	SYNONYMOUS_CODING CG10214 UPSTREAM CG10375 DOWNSTREAM Lsd-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	2.657e^-4	0.525	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12712402	3R_12712402_SNP [dm3] 3R_16886680_SNP [dm6]	A	G	2.658e^-4	0.525	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	937880	3L_937880_SNP [dm3] 3L_937880_SNP [dm6]	G	A	2.658e^-4	0.525	INTRON Glut1
3R	7762354	3R_7762354_SNP [dm3] 3R_11936632_SNP [dm6]	G	T	2.660e^-4	0.525	INTRON Cad87A
X	9438296	X_9438296_SNP [dm3] X_9544263_SNP [dm6]	G	C	2.660e^-4	0.525	INTRON CG32700	TF binding site BDTNP1_TFBS_dl
3R	8869732	3R_8869732_SNP [dm3] 3R_13044010_SNP [dm6]	G	A	2.666e^-4	0.525	UTR_3_PRIME CG11670 UPSTREAM CG45122 & 1 other
2L	556745	2L_556745_SNP [dm3] 2L_556745_SNP [dm6]	C	A	2.667e^-4	0.525	NON_SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8349556	3R_8349556_SNP [dm3] 3R_12523834_SNP [dm6]	G	T	2.671e^-4	0.525	INTRON Octbeta3R
3R	9062309	3R_9062309_SNP [dm3] 3R_13236587_SNP [dm6]	T	G	2.674e^-4	0.525	INTRON Ace
2L	19054764	2L_19054764_SNP [dm3] 2L_19054764_SNP [dm6]	G	T	2.678e^-4	0.525	UTR_5_PRIME CG10492	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2L	19055581	2L_19055581_SNP [dm3] 2L_19055581_SNP [dm6]	A	G	2.678e^-4	0.525	INTRON CG10492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	8899664	3R_8899664_SNP [dm3] 3R_13073942_SNP [dm6]	G	C	2.678e^-4	0.525	INTRON sim	TF binding site BDTNP1_TFBS_dl
2L	4296060	2L_4296060_SNP [dm3] 2L_4296060_SNP [dm6]	C	T	2.688e^-4	0.526	INTRON tutl	TF binding site mE1_TFBS_chinmo
2R	12138512	2R_12138512_DEL [dm3] 2R_16251007_DEL [dm6]	TT	T	2.690e^-4	0.526	INTRON CngA
3R	2221973	3R_2221973_SNP [dm3] 3R_6396251_SNP [dm6]	G	T	2.694e^-4	0.526	INTRON Dmtn
3R	7116304	3R_7116304_SNP [dm3] 3R_11290582_SNP [dm6]	C	A	2.696e^-4	0.526	INTRON CR31386
3L	1238337	3L_1238337_SNP [dm3] 3L_1238337_SNP [dm6]	A	T	2.696e^-4	0.526	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	6575946	3L_6575946_SNP [dm3] 3L_6582846_SNP [dm6]	A	T	2.698e^-4	0.526	INTRON CG18769 & 1 other
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	2.702e^-4	0.526	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
3L	3576014	3L_3576014_SNP [dm3] 3L_3576014_SNP [dm6]	C	G	2.703e^-4	0.526	INTRON Eip63E
3R	6497116	3R_6497116_SNP [dm3] 3R_10671394_SNP [dm6]	T	A	2.708e^-4	0.526	INTERGENIC
2L	13492328	2L_13492328_SNP [dm3] 2L_13492328_SNP [dm6]	A	T	2.715e^-4	0.527	INTRON CG42784
2L	9982642	2L_9982642_SNP [dm3] 2L_9982642_SNP [dm6]	C	G	2.715e^-4	0.527	INTERGENIC	regulatory region REDfly_CRMs
3L	11269532	3L_11269532_SNP [dm3] 3L_11276432_SNP [dm6]	A	G	2.717e^-4	0.527	INTERGENIC
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	2.728e^-4	0.527	INTERGENIC
X	6112584	X_6112584_SNP [dm3] X_6218551_SNP [dm6]	A	G	2.730e^-4	0.527	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21013311	3R_21013311_DEL [dm3] 3R_25187589_DEL [dm6]	TTCCCATT	T	2.731e^-4	0.527	INTRON lobo & 1 other
3R	9539903	3R_9539903_SNP [dm3] 3R_13714181_SNP [dm6]	G	C	2.733e^-4	0.527	EXON CR34044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	17152836	2L_17152836_SNP [dm3] 2L_17152836_SNP [dm6]	G	A	2.737e^-4	0.528	INTRON beat-IIIa & 1 other
3R	24359734	3R_24359734_SNP [dm3] 3R_28534012_SNP [dm6]	G	T	2.741e^-4	0.528	INTRON Ppn
2R	12892517	2R_12892517_SNP [dm3] 2R_17005012_SNP [dm6]	C	A	2.745e^-4	0.528	UPSTREAM CG6805 INTRON NiPp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	8727891	X_8727891_SNP [dm3] X_8833858_SNP [dm6]	A	C	2.753e^-4	0.529	INTERGENIC
3R	8685307	3R_8685307_SNP [dm3] 3R_12859585_SNP [dm6]	G	A	2.754e^-4	0.529	UPSTREAM CG10126 INTERGENIC
3R	9070252	3R_9070252_SNP [dm3] 3R_13244530_SNP [dm6]	G	A	2.762e^-4	0.529	INTRON Ace
3R	18842826	3R_18842826_SNP [dm3] 3R_23017104_SNP [dm6]	A	T	2.764e^-4	0.529	INTERGENIC
3R	8646119	3R_8646119_SNP [dm3] 3R_12820397_SNP [dm6]	G	T	2.765e^-4	0.529	INTERGENIC
2L	19406368	2L_19406368_SNP [dm3] 2L_19406368_SNP [dm6]	C	G	2.770e^-4	0.529	INTRON Pax
2L	13493950	2L_13493950_SNP [dm3] 2L_13493950_SNP [dm6]	G	T	2.770e^-4	0.529	INTRON CG42784
3L	20029054	3L_20029054_SNP [dm3] 3L_20035954_SNP [dm6]	C	A	2.774e^-4	0.529	INTERGENIC
2R	3840710	2R_3840710_SNP [dm3] 2R_7953205_SNP [dm6]	T	G	2.780e^-4	0.53	INTRON CG14764
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	2.783e^-4	0.53	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	5169838	2L_5169838_SNP [dm3] 2L_5169838_SNP [dm6]	C	T	2.786e^-4	0.53	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	2.787e^-4	0.53	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13707513	2L_13707513_SNP [dm3] 2L_13707513_SNP [dm6]	G	A	2.798e^-4	0.53	UPSTREAM CG7311 INTRON CG31814
3L	20877018	3L_20877018_SNP [dm3] 3L_20883918_SNP [dm6]	A	G	2.798e^-4	0.53	INTRON CG32432
3R	2309436	3R_2309436_SNP [dm3] 3R_6483714_SNP [dm6]	C	A	2.799e^-4	0.53	INTRON CG15186
2R	11839111	2R_11839111_SNP [dm3] 2R_15951606_SNP [dm6]	A	G	2.805e^-4	0.53	UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2L	13493933	2L_13493933_SNP [dm3] 2L_13493933_SNP [dm6]	T	A	2.809e^-4	0.53	INTRON CG42784
X	14542870	X_14542870_SNP [dm3] X_14648837_SNP [dm6]	C	T	2.810e^-4	0.53	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3L	11502053	3L_11502053_SNP [dm3] 3L_11508953_SNP [dm6]	A	T	2.814e^-4	0.53	UPSTREAM Sgs7 DOWNSTREAM Sgs8 & 1 other INTERGENIC
3R	11724703	3R_11724703_SNP [dm3] 3R_15898981_SNP [dm6]	T	G	2.815e^-4	0.53	INTRON glob1
3R	9572284	3R_9572284_SNP [dm3] 3R_13746562_SNP [dm6]	C	T	2.825e^-4	0.53	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6093032	2L_6093032_SNP [dm3] 2L_6093032_SNP [dm6]	C	T	2.829e^-4	0.53	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8494403	3R_8494403_SNP [dm3] 3R_12668681_SNP [dm6]	G	T	2.830e^-4	0.53	UTR_5_PRIME CG14395
2R	12474766	2R_12474766_SNP [dm3] 2R_16587261_SNP [dm6]	A	G	2.837e^-4	0.53	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
2R	14020974	2R_14020974_SNP [dm3] 2R_18133469_SNP [dm6]	G	T	2.839e^-4	0.53	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl

Missing results

By genomic position
Variant impact
Gene name

Cuticul_7_11_C23_2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results