DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.705e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05787
In_3R_K	5.268e-05

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.8946	0.0525
In_3R_K	17.7456	0.0001

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2546 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	1.382e^-8	0.026	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	3.005e^-7	0.19	INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	3.035e^-7	0.19	INTRON Octbeta3R
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	5.297e^-7	0.248	INTRON Octbeta3R
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	1.443e^-6	0.411	INTRON Cad87A
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	1.512e^-6	0.411	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.535e^-6	0.411	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	2.454e^-6	0.575	INTRON Octbeta3R
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	4.268e^-6	0.596	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	4.650e^-6	0.596	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	4.834e^-6	0.596	UPSTREAM hoe1 INTRON hoe1
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	4.922e^-6	0.596	INTRON beat-Vc
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	4.972e^-6	0.596	INTERGENIC
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	5.258e^-6	0.596	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	5.442e^-6	0.596	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	5.773e^-6	0.596	DOWNSTREAM CG18109 INTERGENIC
3L	9731033	3L_9731033_SNP [dm3] 3L_9737933_SNP [dm6]	C	T	5.857e^-6	0.596	INTRON CG42268
3L	9731081	3L_9731081_SNP [dm3] 3L_9737981_SNP [dm6]	G	A	6.310e^-6	0.596	INTRON CG42268
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	6.795e^-6	0.596	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	7.365e^-6	0.596	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8292108	2R_8292108_SNP [dm3] 2R_12404603_SNP [dm6]	C	T	7.519e^-6	0.596	UTR_3_PRIME Cpr49Ae	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14542870	X_14542870_SNP [dm3] X_14648837_SNP [dm6]	C	T	8.212e^-6	0.596	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	8.283e^-6	0.596	INTERGENIC
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	8.609e^-6	0.596	INTRON grsm
3R	7798413	3R_7798413_SNP [dm3] 3R_11972691_SNP [dm6]	C	T	8.687e^-6	0.596	SYNONYMOUS_CODING GC2 DOWNSTREAM Tango9
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	8.705e^-6	0.596	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	8.886e^-6	0.596	INTERGENIC
3L	9306038	3L_9306038_SNP [dm3] 3L_9312938_SNP [dm6]	A	C	9.177e^-6	0.596	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	9.543e^-6	0.596	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	1.006e^-5	0.596	UTR_3_PRIME bol
3L	22805088	3L_22805088_SNP [dm3] 3L_22811988_SNP [dm6]	A	G	1.105e^-5	0.596	INTRON jim	transposable element FlyBase
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	1.148e^-5	0.596	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	8482527	3R_8482527_SNP [dm3] 3R_12656805_SNP [dm6]	T	G	1.236e^-5	0.596	UTR_5_PRIME CG6225
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	1.294e^-5	0.596	INTRON CG18769
3R	19323752	3R_19323752_SNP [dm3] 3R_23498030_SNP [dm6]	T	A	1.404e^-5	0.596	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18832590	3L_18832590_SNP [dm3] 3L_18839490_SNP [dm6]	T	C	1.445e^-5	0.596	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7772471	3R_7772471_SNP [dm3] 3R_11946749_SNP [dm6]	G	A	1.466e^-5	0.596	INTRON Cad87A
2R	14158393	2R_14158393_SNP [dm3] 2R_18270888_SNP [dm6]	A	G	1.527e^-5	0.596	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	528267	2L_528267_SNP [dm3] 2L_528267_SNP [dm6]	T	A	1.532e^-5	0.596	INTRON ush	regulatory region REDfly_CRMs
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	1.553e^-5	0.596	INTRON grsm
3R	19592587	3R_19592587_SNP [dm3] 3R_23766865_SNP [dm6]	A	G	1.611e^-5	0.596	SYNONYMOUS_CODING CG10214 UPSTREAM CG10375 DOWNSTREAM Lsd-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	1.615e^-5	0.596	DOWNSTREAM CR44941 INTERGENIC
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	1.679e^-5	0.596	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	7437420	2R_7437420_DEL [dm3] 2R_11549915_DEL [dm6]	CTTTT	C	1.743e^-5	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	1.797e^-5	0.596	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	1.804e^-5	0.596	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
2R	12533956	2R_12533956_SNP [dm3] 2R_16646451_SNP [dm6]	C	G	1.816e^-5	0.596	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	1.817e^-5	0.596	INTERGENIC
X	5121690	X_5121690_INS [dm3] X_5227657_INS [dm6]	C	CC	1.834e^-5	0.596	INTRON CG15465 & 1 other
2L	8405804	2L_8405804_SNP [dm3] 2L_8405804_SNP [dm6]	C	A	1.886e^-5	0.596	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405848	2L_8405848_SNP [dm3] 2L_8405848_SNP [dm6]	G	T	1.886e^-5	0.596	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405852	2L_8405852_SNP [dm3] 2L_8405852_SNP [dm6]	A	G	1.886e^-5	0.596	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405862	2L_8405862_SNP [dm3] 2L_8405862_SNP [dm6]	A	T	1.886e^-5	0.596	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405874	2L_8405874_SNP [dm3] 2L_8405874_SNP [dm6]	G	T	1.886e^-5	0.596	INTRON emb	TF binding site mE1_TFBS_sens
2L	8405911	2L_8405911_SNP [dm3] 2L_8405911_SNP [dm6]	T	G	1.886e^-5	0.596	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405913	2L_8405913_SNP [dm3] 2L_8405913_SNP [dm6]	C	T	1.886e^-5	0.596	SPLICE_SITE_REGION emb INTRON emb	TF binding site mE1_TFBS_sens
2L	8405971	2L_8405971_SNP [dm3] 2L_8405971_SNP [dm6]	A	G	1.886e^-5	0.596	SYNONYMOUS_CODING emb
2L	8405463	2L_8405463_SNP [dm3] 2L_8405463_SNP [dm6]	A	G	1.908e^-5	0.596	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	1.924e^-5	0.596	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	1.939e^-5	0.596	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	8771965	3R_8771965_SNP [dm3] 3R_12946243_SNP [dm6]	C	A	2.031e^-5	0.596	INTERGENIC
3R	8777175	3R_8777175_SNP [dm3] 3R_12951453_SNP [dm6]	G	A	2.080e^-5	0.596	INTRON grsm
3R	6289143	3R_6289143_INS [dm3] 3R_10463421_INS [dm6]	T	CA	2.157e^-5	0.596	EXON CR44955
3R	19658593	3R_19658593_SNP [dm3] 3R_23832871_SNP [dm6]	T	G	2.209e^-5	0.596	INTRON CG34355
3L	6279074	3L_6279074_SNP [dm3] 3L_6285974_SNP [dm6]	G	A	2.215e^-5	0.596	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8839960	X_8839960_SNP [dm3] X_8945927_SNP [dm6]	T	C	2.308e^-5	0.596	INTRON rdgA
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	2.308e^-5	0.596	INTRON beat-Vc
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	2.322e^-5	0.596	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
X	8508217	X_8508217_SNP [dm3] X_8614184_SNP [dm6]	A	G	2.420e^-5	0.596	INTERGENIC
3R	7732659	3R_7732659_SNP [dm3] 3R_11906937_SNP [dm6]	A	G	2.585e^-5	0.596	INTRON Cad87A
2R	19109678	2R_19109678_SNP [dm3] 2R_23222155_SNP [dm6]	G	A	2.589e^-5	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	2.635e^-5	0.596	INTRON kar	TF binding site mE1_TFBS_cad
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	2.651e^-5	0.596	INTRON timeout & 2 others
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	2.665e^-5	0.596	INTRON grsm
3L	1868869	3L_1868869_INS [dm3] 3L_1868869_INS [dm6]	T	TT	2.674e^-5	0.596	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
3L	6866491	3L_6866491_SNP [dm3] 3L_6873391_SNP [dm6]	T	A	2.738e^-5	0.596	INTERGENIC
3R	18156333	3R_18156333_SNP [dm3] 3R_22330611_SNP [dm6]	C	G	2.746e^-5	0.596	UPSTREAM CG33721 DOWNSTREAM CG7080 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8439929	3R_8439929_SNP [dm3] 3R_12614207_SNP [dm6]	C	T	2.768e^-5	0.596	INTERGENIC
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	2.772e^-5	0.596	INTRON CG14877
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	2.786e^-5	0.596	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	2.803e^-5	0.596	INTRON salm
3R	7800242	3R_7800242_SNP [dm3] 3R_11974520_SNP [dm6]	T	G	2.876e^-5	0.596	DOWNSTREAM CG10005 INTRON Tango9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	18365880	3L_18365880_DEL [dm3] 3L_18372780_DEL [dm6]	GAATTTCTG	A	2.903e^-5	0.596	INTERGENIC
3L	14205797	3L_14205797_SNP [dm3] 3L_14212697_SNP [dm6]	A	T	2.941e^-5	0.596	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	6733221	3L_6733221_SNP [dm3] 3L_6740121_SNP [dm6]	T	G	2.991e^-5	0.596	DOWNSTREAM dikar INTRON dikar
X	4437888	X_4437888_SNP [dm3] X_4543855_SNP [dm6]	C	T	2.997e^-5	0.596	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	3.006e^-5	0.596	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18057263	2R_18057263_SNP [dm3] 2R_22169758_SNP [dm6]	T	A	3.027e^-5	0.596	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7732716	3R_7732716_SNP [dm3] 3R_11906994_SNP [dm6]	A	T	3.062e^-5	0.596	INTRON Cad87A
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	3.097e^-5	0.596	UPSTREAM CG10635 & 1 other INTERGENIC
3R	7774132	3R_7774132_SNP [dm3] 3R_11948410_SNP [dm6]	A	G	3.128e^-5	0.596	INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	3.142e^-5	0.596	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	3.203e^-5	0.596	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	3.217e^-5	0.596	INTRON dpr6
3R	8782490	3R_8782490_SNP [dm3] 3R_12956768_SNP [dm6]	A	T	3.229e^-5	0.596	INTRON grsm
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	3.280e^-5	0.596	DOWNSTREAM CG33098 INTRON CG34402
3L	8654154	3L_8654154_SNP [dm3] 3L_8661054_SNP [dm6]	C	T	3.288e^-5	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11448729	2L_11448729_SNP [dm3] 2L_11448729_SNP [dm6]	T	C	3.318e^-5	0.596	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21702533	3R_21702533_DEL [dm3] 3R_25876811_DEL [dm6]	TCT	T	3.322e^-5	0.596	INTRON Tsp96F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26454700	3R_26454700_SNP [dm3] 3R_30628978_SNP [dm6]	T	C	3.341e^-5	0.596	UTR_5_PRIME CG2267
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	3.363e^-5	0.596	INTRON Cad87A
2R	18199780	2R_18199780_SNP [dm3] 2R_22312275_SNP [dm6]	A	C	3.399e^-5	0.596	UPSTREAM wdp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	3.452e^-5	0.596	INTRON timeout & 2 others
2R	3348458	2R_3348458_SNP [dm3] 2R_7460953_SNP [dm6]	T	C	3.458e^-5	0.596	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	17528540	3R_17528540_DEL [dm3] 3R_21702818_DEL [dm6]	ATCTGTA	A	3.467e^-5	0.596	INTRON CG31176
3L	12106199	3L_12106199_SNP [dm3] 3L_12113099_SNP [dm6]	A	T	3.503e^-5	0.596	INTERGENIC
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	3.512e^-5	0.596	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	3.535e^-5	0.596	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	3.535e^-5	0.596	INTRON timeout & 2 others
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	3.598e^-5	0.596	INTRON beat-Vc
3R	8468177	3R_8468177_SNP [dm3] 3R_12642455_SNP [dm6]	G	T	3.649e^-5	0.596	UTR_5_PRIME CG6753	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7732676	3R_7732676_SNP [dm3] 3R_11906954_SNP [dm6]	A	G	3.681e^-5	0.596	INTRON Cad87A
2R	7437428	2R_7437428_SNP [dm3] 2R_11549923_SNP [dm6]	C	T	3.690e^-5	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	18982358	3R_18982358_SNP [dm3] 3R_23156636_SNP [dm6]	T	A	3.696e^-5	0.596	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8439668	3R_8439668_SNP [dm3] 3R_12613946_SNP [dm6]	T	A	3.757e^-5	0.596	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	3.761e^-5	0.596	INTERGENIC
2R	3348498	2R_3348498_SNP [dm3] 2R_7460993_SNP [dm6]	A	C	3.797e^-5	0.596	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	3.811e^-5	0.596	INTERGENIC
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	3.820e^-5	0.596	INTERGENIC
X	10886474	X_10886474_SNP [dm3] X_10992441_SNP [dm6]	C	A	3.825e^-5	0.596	INTRON CG42339
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	3.878e^-5	0.596	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8279431	X_8279431_SNP [dm3] X_8385398_SNP [dm6]	A	T	3.899e^-5	0.596	UPSTREAM CG1387 INTERGENIC
3R	7800347	3R_7800347_SNP [dm3] 3R_11974625_SNP [dm6]	A	G	3.919e^-5	0.596	UTR_5_PRIME Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8031554	3R_8031554_SNP [dm3] 3R_12205832_SNP [dm6]	C	A	3.939e^-5	0.596	UPSTREAM tRNA:CR31356 INTERGENIC
3R	7732699	3R_7732699_SNP [dm3] 3R_11906977_SNP [dm6]	C	T	3.988e^-5	0.598	INTRON Cad87A
3L	12347764	3L_12347764_SNP [dm3] 3L_12354664_SNP [dm6]	T	G	4.071e^-5	0.601	INTERGENIC
3L	5888680	3L_5888680_DEL [dm3] 3L_5895580_DEL [dm6]	AAGTTTATA	A	4.095e^-5	0.601	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	4.101e^-5	0.601	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8572590	3R_8572590_SNP [dm3] 3R_12746868_SNP [dm6]	G	A	4.131e^-5	0.601	SYNONYMOUS_CODING beat-Vc
3R	6627087	3R_6627087_SNP [dm3] 3R_10801365_SNP [dm6]	G	C	4.193e^-5	0.602	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	4.216e^-5	0.602	INTRON timeout & 2 others
3R	23254137	3R_23254137_SNP [dm3] 3R_27428415_SNP [dm6]	T	C	4.237e^-5	0.602	INTRON side
3L	14205927	3L_14205927_SNP [dm3] 3L_14212827_SNP [dm6]	A	T	4.290e^-5	0.602	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	15944024	2L_15944024_SNP [dm3] 2L_15944024_SNP [dm6]	C	G	4.393e^-5	0.602	INTRON beat-Ib
2R	3344122	2R_3344122_SNP [dm3] 2R_7456617_SNP [dm6]	A	G	4.428e^-5	0.602	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	4.493e^-5	0.602	INTERGENIC
2R	3348324	2R_3348324_SNP [dm3] 2R_7460819_SNP [dm6]	T	C	4.519e^-5	0.602	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	8560942	3R_8560942_MNP [dm3] 3R_12735220_MNP [dm6]	AAG	TTT	4.594e^-5	0.602	INTERGENIC
3R	19375192	3R_19375192_SNP [dm3] 3R_23549470_SNP [dm6]	T	A	4.671e^-5	0.602	INTERGENIC
3R	19206458	3R_19206458_INS [dm3] 3R_23380736_INS [dm6]	C	CCATGAC	4.689e^-5	0.602	CODON_INSERTION CG4393	TF binding site mE1_TFBS_chinmo
3R	14319366	3R_14319366_SNP [dm3] 3R_18493644_SNP [dm6]	G	A	4.693e^-5	0.602	INTRON fru
3R	9086132	3R_9086132_SNP [dm3] 3R_13260410_SNP [dm6]	G	T	4.701e^-5	0.602	UTR_5_PRIME CG11686 UPSTREAM Ace
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	4.784e^-5	0.602	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	4.787e^-5	0.602	EXON CR43404
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	4.803e^-5	0.602	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
2L	1698340	2L_1698340_SNP [dm3] 2L_1698340_SNP [dm6]	T	A	4.803e^-5	0.602	UTR_3_PRIME chinmo DOWNSTREAM chinmo
2L	5812993	2L_5812993_SNP [dm3] 2L_5812993_SNP [dm6]	A	C	4.836e^-5	0.602	INTERGENIC
3R	8783040	3R_8783040_INS [dm3] 3R_12957318_INS [dm6]	A	AA	4.836e^-5	0.602	INTRON grsm
3L	12347791	3L_12347791_SNP [dm3] 3L_12354691_SNP [dm6]	C	T	4.842e^-5	0.602	INTERGENIC
3L	12106063	3L_12106063_SNP [dm3] 3L_12112963_SNP [dm6]	T	C	4.918e^-5	0.602	INTERGENIC
2L	10939798	2L_10939798_SNP [dm3] 2L_10939798_SNP [dm6]	T	C	4.922e^-5	0.602	INTRON dpr2
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	4.929e^-5	0.602	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8511590	3R_8511590_SNP [dm3] 3R_12685868_SNP [dm6]	T	C	4.932e^-5	0.602	INTRON kar	TF binding site mE1_TFBS_cad
3L	9952430	3L_9952430_SNP [dm3] 3L_9959330_SNP [dm6]	G	A	4.964e^-5	0.602	INTRON CG34356
3L	12351616	3L_12351616_SNP [dm3] 3L_12358516_SNP [dm6]	G	A	4.978e^-5	0.602	INTERGENIC
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	5.040e^-5	0.603	INTERGENIC
3R	8799967	3R_8799967_SNP [dm3] 3R_12974245_SNP [dm6]	C	T	5.159e^-5	0.603	INTRON CG7381
X	7964388	X_7964388_INS [dm3] X_8070355_INS [dm6]	G	GAG	5.181e^-5	0.603	UTR_3_PRIME Upf2 DOWNSTREAM mys
2R	5038366	2R_5038366_SNP [dm3] 2R_9150861_SNP [dm6]	C	G	5.227e^-5	0.603	SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	5.329e^-5	0.603	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3L	9094890	3L_9094890_SNP [dm3] 3L_9101790_SNP [dm6]	C	T	5.363e^-5	0.603	UTR_3_PRIME bol
X	6575773	X_6575773_SNP [dm3] X_6681740_SNP [dm6]	T	C	5.378e^-5	0.603	UTR_3_PRIME l_1_G0255 UPSTREAM CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	430423	3R_430423_SNP [dm3] 3R_4604701_SNP [dm6]	T	C	5.386e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	5.408e^-5	0.603	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19773950	2R_19773950_SNP [dm3] 2R_23886427_SNP [dm6]	T	A	5.473e^-5	0.603	UPSTREAM CG5597 INTERGENIC
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	5.533e^-5	0.603	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8785260	3R_8785260_SNP [dm3] 3R_12959538_SNP [dm6]	G	T	5.602e^-5	0.603	SYNONYMOUS_CODING grsm	TF binding site mE1_TFBS_cad
3L	14205821	3L_14205821_SNP [dm3] 3L_14212721_SNP [dm6]	T	A	5.604e^-5	0.603	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	5.616e^-5	0.603	SYNONYMOUS_CODING Best2
3L	11450272	3L_11450272_SNP [dm3] 3L_11457172_SNP [dm6]	G	A	5.638e^-5	0.603	NON_SYNONYMOUS_CODING CG12289
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	5.648e^-5	0.603	INTERGENIC
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	5.679e^-5	0.603	SYNONYMOUS_CODING CG30344
2R	3344119	2R_3344119_SNP [dm3] 2R_7456614_SNP [dm6]	G	A	5.688e^-5	0.603	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	7797512	3R_7797512_SNP [dm3] 3R_11971790_SNP [dm6]	T	G	5.712e^-5	0.603	SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1
X	7776814	X_7776814_SNP [dm3] X_7882781_SNP [dm6]	C	G	5.727e^-5	0.603	NON_SYNONYMOUS_CODING Ir7f
2R	6051808	2R_6051808_SNP [dm3] 2R_10164303_SNP [dm6]	G	T	5.759e^-5	0.603	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	5.835e^-5	0.603	INTRON ush	regulatory region REDfly_CRMs
3L	18835301	3L_18835301_SNP [dm3] 3L_18842201_SNP [dm6]	T	A	5.863e^-5	0.603	UPSTREAM Indy INTRON Indy & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8798003	3R_8798003_SNP [dm3] 3R_12972281_SNP [dm6]	A	T	5.921e^-5	0.603	UPSTREAM CG7381 INTRON CG7381
3R	6273672	3R_6273672_SNP [dm3] 3R_10447950_SNP [dm6]	A	C	5.931e^-5	0.603	INTERGENIC
3R	8555320	3R_8555320_SNP [dm3] 3R_12729598_SNP [dm6]	T	A	5.981e^-5	0.603	INTERGENIC
2R	17203637	2R_17203637_SNP [dm3] 2R_21316132_SNP [dm6]	G	T	6.018e^-5	0.603	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	6.045e^-5	0.603	INTERGENIC
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	6.064e^-5	0.603	INTRON beat-Vc
2L	11450545	2L_11450545_SNP [dm3] 2L_11450545_SNP [dm6]	T	A	6.067e^-5	0.603	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	6.071e^-5	0.603	UPSTREAM CR45374 INTERGENIC
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	6.092e^-5	0.603	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10522790	2L_10522790_SNP [dm3] 2L_10522790_SNP [dm6]	C	G	6.098e^-5	0.603	INTERGENIC
3R	6628348	3R_6628348_SNP [dm3] 3R_10802626_SNP [dm6]	T	A	6.105e^-5	0.603	INTRON CG14692
3R	17722113	3R_17722113_INS [dm3] 3R_21896391_INS [dm6]	G	TAT	6.144e^-5	0.603	INTRON CG6678
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	6.172e^-5	0.603	UPSTREAM CR44264 EXON CR45567
3L	9749385	3L_9749385_SNP [dm3] 3L_9756285_SNP [dm6]	G	A	6.186e^-5	0.603	INTRON CG42268
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	6.209e^-5	0.603	INTRON salm
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	6.281e^-5	0.603	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	22962190	3R_22962190_SNP [dm3] 3R_27136468_SNP [dm6]	C	T	6.347e^-5	0.603	INTRON CG6051
3R	13163113	3R_13163113_SNP [dm3] 3R_17337391_SNP [dm6]	T	C	6.385e^-5	0.603	INTRON beat-IIa
3L	12106192	3L_12106192_SNP [dm3] 3L_12113092_SNP [dm6]	T	G	6.390e^-5	0.603	INTERGENIC
3R	21674793	3R_21674793_SNP [dm3] 3R_25849071_SNP [dm6]	C	T	6.391e^-5	0.603	DOWNSTREAM CR45657 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4750026	2R_4750026_SNP [dm3] 2R_8862521_SNP [dm6]	A	G	6.396e^-5	0.603	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27174223	3R_27174223_SNP [dm3] 3R_31348501_SNP [dm6]	T	A	6.435e^-5	0.603	INTRON CG34347	regulatory region REDfly_CRMs
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	6.484e^-5	0.605	INTERGENIC
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	6.579e^-5	0.606	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	9364937	2L_9364937_SNP [dm3] 2L_9364937_SNP [dm6]	C	A	6.583e^-5	0.606	EXON CR43404
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	6.587e^-5	0.606	UPSTREAM CR45374 INTERGENIC
2L	11448829	2L_11448829_SNP [dm3] 2L_11448829_SNP [dm6]	G	A	6.801e^-5	0.619	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	19251764	2L_19251764_SNP [dm3] 2L_19251764_SNP [dm6]	A	G	6.818e^-5	0.619	INTERGENIC
3L	6733219	3L_6733219_SNP [dm3] 3L_6740119_SNP [dm6]	A	G	6.838e^-5	0.619	DOWNSTREAM dikar INTRON dikar
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	6.943e^-5	0.619	INTRON timeout & 2 others
3L	4355966	3L_4355966_SNP [dm3] 3L_4355966_SNP [dm6]	C	T	7.023e^-5	0.619	INTRON Cip4
X	7778980	X_7778980_SNP [dm3] X_7884947_SNP [dm6]	T	A	7.040e^-5	0.619	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3R	19323454	3R_19323454_SNP [dm3] 3R_23497732_SNP [dm6]	T	C	7.071e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22704366	3R_22704366_SNP [dm3] 3R_26878644_SNP [dm6]	G	A	7.117e^-5	0.619	INTRON CG5500 & 1 other
2L	15373701	2L_15373701_SNP [dm3] 2L_15373701_SNP [dm6]	G	A	7.132e^-5	0.619	INTERGENIC
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	7.196e^-5	0.619	UPSTREAM CG44403 INTRON CG10936
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	7.235e^-5	0.619	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16966225	2R_16966225_SNP [dm3] 2R_21078720_SNP [dm6]	A	C	7.251e^-5	0.619	INTRON Treh
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	7.286e^-5	0.619	EXON CR44942	TF binding site BDTNP1_TFBS_twi
3R	8560964	3R_8560964_SNP [dm3] 3R_12735242_SNP [dm6]	C	T	7.301e^-5	0.619	INTERGENIC
3L	12648690	3L_12648690_SNP [dm3] 3L_12655590_SNP [dm6]	G	C	7.335e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12648706	3L_12648706_SNP [dm3] 3L_12655606_SNP [dm6]	A	G	7.335e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4648712	2L_4648712_SNP [dm3] 2L_4648712_SNP [dm6]	T	A	7.335e^-5	0.619	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4648720	2L_4648720_SNP [dm3] 2L_4648720_SNP [dm6]	G	A	7.335e^-5	0.619	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10707166	2R_10707166_SNP [dm3] 2R_14819661_SNP [dm6]	A	G	7.406e^-5	0.619	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8452449	3R_8452449_SNP [dm3] 3R_12626727_SNP [dm6]	A	T	7.473e^-5	0.619	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	1868880	3L_1868880_DEL [dm3] 3L_1868880_DEL [dm6]	TT	T	7.493e^-5	0.619	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
3R	11567765	3R_11567765_SNP [dm3] 3R_15742043_SNP [dm6]	G	T	7.566e^-5	0.619	INTERGENIC
2L	6157701	2L_6157701_SNP [dm3] 2L_6157701_SNP [dm6]	T	C	7.669e^-5	0.619	INTERGENIC
3R	13928058	3R_13928058_SNP [dm3] 3R_18102336_SNP [dm6]	G	A	7.676e^-5	0.619	INTRON sr
3R	7732618	3R_7732618_SNP [dm3] 3R_11906896_SNP [dm6]	G	C	7.677e^-5	0.619	INTRON Cad87A
3R	14511392	3R_14511392_SNP [dm3] 3R_18685670_SNP [dm6]	A	C	7.786e^-5	0.619	UTR_3_PRIME CG7708 DOWNSTREAM CG7708
3R	7747933	3R_7747933_SNP [dm3] 3R_11922211_SNP [dm6]	A	G	7.862e^-5	0.619	INTRON Cad87A
3L	16977839	3L_16977839_SNP [dm3] 3L_16984739_SNP [dm6]	A	T	7.939e^-5	0.619	INTRON Exn
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	8.020e^-5	0.619	INTRON CG18769
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	8.095e^-5	0.619	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4123978	X_4123978_SNP [dm3] X_4229945_SNP [dm6]	G	T	8.128e^-5	0.619	INTERGENIC
3R	11574161	3R_11574161_SNP [dm3] 3R_15748439_SNP [dm6]	C	T	8.187e^-5	0.619	INTERGENIC
3R	8782135	3R_8782135_SNP [dm3] 3R_12956413_SNP [dm6]	T	A	8.189e^-5	0.619	INTRON grsm
2L	16042712	2L_16042712_DEL [dm3] 2L_16042712_DEL [dm6]	CA	C	8.223e^-5	0.619	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	8.259e^-5	0.619	DOWNSTREAM TkR86C INTERGENIC
2R	14870390	2R_14870390_SNP [dm3] 2R_18982885_SNP [dm6]	C	G	8.283e^-5	0.619	INTERGENIC
2R	5036712	2R_5036712_DEL [dm3] 2R_9149207_DEL [dm6]	TA	T	8.352e^-5	0.619	DOWNSTREAM CG30344 INTRON CG30345
3R	6298880	3R_6298880_SNP [dm3] 3R_10473158_SNP [dm6]	A	C	8.426e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	8.447e^-5	0.619	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
3R	14501160	3R_14501160_SNP [dm3] 3R_18675438_SNP [dm6]	A	G	8.487e^-5	0.619	SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	8.491e^-5	0.619	INTRON timeout & 2 others
3L	18837007	3L_18837007_SNP [dm3] 3L_18843907_SNP [dm6]	A	T	8.496e^-5	0.619	INTRON Indy
2R	18448596	2R_18448596_SNP [dm3] 2R_22561091_SNP [dm6]	A	G	8.516e^-5	0.619	UTR_5_PRIME px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	8.545e^-5	0.619	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	7778968	X_7778968_SNP [dm3] X_7884935_SNP [dm6]	C	A	8.570e^-5	0.619	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	8.579e^-5	0.619	INTRON GC1
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	8.586e^-5	0.619	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8977070	3R_8977070_DEL [dm3] 3R_13151348_DEL [dm6]	AGACA	A	8.599e^-5	0.619	INTRON timeout & 2 others
3R	6272794	3R_6272794_DEL [dm3] 3R_10447072_DEL [dm6]	GAAATTAAGCCCC...	G	8.613e^-5	0.619	INTERGENIC
3R	6640523	3R_6640523_SNP [dm3] 3R_10814801_SNP [dm6]	G	T	8.621e^-5	0.619	SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
2L	22037424	2L_22037424_SNP [dm3] 2L_22037424_SNP [dm6]	T	A	8.629e^-5	0.619	UPSTREAM CG41434 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14820268	3R_14820268_SNP [dm3] 3R_18994546_SNP [dm6]	T	C	8.651e^-5	0.619	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5361957	3L_5361957_DEL [dm3] 3L_5368857_DEL [dm6]	ATTAAACTGAGTATTTCGAA...	A	8.676e^-5	0.619	UPSTREAM CG10635 & 1 other INTERGENIC
2L	4081680	2L_4081680_SNP [dm3] 2L_4081680_SNP [dm6]	T	A	8.696e^-5	0.619	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	8.781e^-5	0.619	INTRON fru
3R	3470677	3R_3470677_SNP [dm3] 3R_7644955_SNP [dm6]	G	A	8.803e^-5	0.619	INTERGENIC
2L	14300613	2L_14300613_SNP [dm3] 2L_14300613_SNP [dm6]	A	G	8.818e^-5	0.619	UPSTREAM wb INTRON wb	TF binding site mE1_TFBS_Trl
X	9194673	X_9194673_SNP [dm3] X_9300640_SNP [dm6]	C	A	8.832e^-5	0.619	INTRON lz
3L	8032185	3L_8032185_SNP [dm3] 3L_8039085_SNP [dm6]	G	A	8.870e^-5	0.619	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25143237	3R_25143237_SNP [dm3] 3R_29317515_SNP [dm6]	A	T	8.932e^-5	0.619	SPLICE_SITE_REGION Cnx99A INTRON Cnx99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10091071	2R_10091071_SNP [dm3] 2R_14203566_SNP [dm6]	C	T	8.956e^-5	0.619	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7855441	3R_7855441_SNP [dm3] 3R_12029719_SNP [dm6]	A	G	9.010e^-5	0.619	SYNONYMOUS_CODING CG42504 UTR_5_PRIME CG42505 UTR_3_PRIME CG31358
2R	5472392	2R_5472392_SNP [dm3] 2R_9584887_SNP [dm6]	T	G	9.067e^-5	0.619	UPSTREAM CG1868 INTRON Updo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20906628	3R_20906628_SNP [dm3] 3R_25080906_SNP [dm6]	A	T	9.104e^-5	0.619	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16718147	3R_16718147_SNP [dm3] 3R_20892425_SNP [dm6]	T	C	9.112e^-5	0.619	DOWNSTREAM CR44947 & 1 other INTERGENIC
2R	19237965	2R_19237965_SNP [dm3] 2R_23350442_SNP [dm6]	G	A	9.194e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	9.309e^-5	0.619	INTERGENIC
3R	8448195	3R_8448195_SNP [dm3] 3R_12622473_SNP [dm6]	G	A	9.325e^-5	0.619	INTERGENIC
2L	9611407	2L_9611407_SNP [dm3] 2L_9611407_SNP [dm6]	G	A	9.336e^-5	0.619	SPLICE_SITE_REGION gcm2 INTRON gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8793021	3R_8793021_SNP [dm3] 3R_12967299_SNP [dm6]	C	T	9.405e^-5	0.619	NON_SYNONYMOUS_CODING grsm UTR_5_PRIME CG14384 UPSTREAM CG14384 DOWNSTREAM CG7381
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	9.410e^-5	0.619	INTERGENIC
X	17366918	X_17366918_SNP [dm3] X_17472885_SNP [dm6]	A	C	9.472e^-5	0.619	INTRON CG43658	TF binding site mE1_TFBS_cad
X	8732881	X_8732881_INS [dm3] X_8838848_INS [dm6]	A	ATGGA	9.496e^-5	0.619	INTRON CG12075
2R	5038670	2R_5038670_SNP [dm3] 2R_9151165_SNP [dm6]	T	A	9.514e^-5	0.619	NON_SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	9.535e^-5	0.619	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14020809	2R_14020809_SNP [dm3] 2R_18133304_SNP [dm6]	A	T	9.556e^-5	0.619	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	6548034	3R_6548034_SNP [dm3] 3R_10722312_SNP [dm6]	T	C	9.569e^-5	0.619	INTERGENIC
2R	18551917	2R_18551917_SNP [dm3] 2R_22664412_SNP [dm6]	A	C	9.597e^-5	0.619	UTR_3_PRIME CG4250
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	9.606e^-5	0.619	INTRON NaPi-T
2R	13772402	2R_13772402_SNP [dm3] 2R_17884897_SNP [dm6]	T	C	9.618e^-5	0.619	INTRON Elk
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	9.631e^-5	0.619	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	8651610	3R_8651610_DEL [dm3] 3R_12825888_DEL [dm6]	TCGAAATCGCCGGCAGACGT...	T	9.653e^-5	0.619	INTERGENIC
3R	8560960	3R_8560960_SNP [dm3] 3R_12735238_SNP [dm6]	A	T	9.656e^-5	0.619	INTERGENIC
3L	9989709	3L_9989709_SNP [dm3] 3L_9996609_SNP [dm6]	T	G	9.686e^-5	0.619	INTRON dpr6
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	9.717e^-5	0.619	INTRON Indy
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	9.730e^-5	0.619	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9992246	3L_9992246_SNP [dm3] 3L_9999146_SNP [dm6]	C	T	9.735e^-5	0.619	INTRON dpr6
2L	2549863	2L_2549863_SNP [dm3] 2L_2549863_SNP [dm6]	A	G	9.743e^-5	0.619	INTERGENIC
3L	6928121	3L_6928121_SNP [dm3] 3L_6935021_SNP [dm6]	A	G	9.759e^-5	0.619	DOWNSTREAM CR45415 & 1 other INTERGENIC
2L	4570471	2L_4570471_SNP [dm3] 2L_4570471_SNP [dm6]	T	C	9.812e^-5	0.619	SPLICE_SITE_REGION dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18832616	3L_18832616_SNP [dm3] 3L_18839516_SNP [dm6]	C	T	9.826e^-5	0.619	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14885925	2R_14885925_SNP [dm3] 2R_18998420_SNP [dm6]	T	A	9.850e^-5	0.619	SYNONYMOUS_CODING tn INTRON tn
3R	8776947	3R_8776947_DEL [dm3] 3R_12951225_DEL [dm6]	GCGGACAACTCGGGGATGCA...	AAAAA	9.860e^-5	0.619	INTRON grsm
2R	3348420	2R_3348420_SNP [dm3] 2R_7460915_SNP [dm6]	A	T	9.873e^-5	0.619	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2R	3348368	2R_3348368_SNP [dm3] 2R_7460863_SNP [dm6]	A	T	9.874e^-5	0.619	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3L	1827837	3L_1827837_SNP [dm3] 3L_1827837_SNP [dm6]	A	T	1.003e^-4	0.624	INTRON Cpr62Ba
3R	19231132	3R_19231132_SNP [dm3] 3R_23405410_SNP [dm6]	G	A	1.003e^-4	0.624	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	1.005e^-4	0.624	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6733232	3L_6733232_SNP [dm3] 3L_6740132_SNP [dm6]	T	A	1.011e^-4	0.624	DOWNSTREAM dikar INTRON dikar
3R	12678023	3R_12678023_SNP [dm3] 3R_16852301_SNP [dm6]	T	G	1.012e^-4	0.624	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8405883	2L_8405883_SNP [dm3] 2L_8405883_SNP [dm6]	C	T	1.017e^-4	0.626	INTRON emb	TF binding site mE1_TFBS_sens
2L	14471313	2L_14471313_SNP [dm3] 2L_14471313_SNP [dm6]	A	G	1.034e^-4	0.629	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8560968	3R_8560968_MNP [dm3] 3R_12735246_MNP [dm6]	GTTT	AAAA	1.036e^-4	0.629	INTERGENIC
3L	9989668	3L_9989668_SNP [dm3] 3L_9996568_SNP [dm6]	A	G	1.036e^-4	0.629	INTRON dpr6
2L	14471329	2L_14471329_SNP [dm3] 2L_14471329_SNP [dm6]	T	C	1.037e^-4	0.629	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19323718	3R_19323718_DEL [dm3] 3R_23497996_DEL [dm6]	TCTGTGGGTCAGATTGACCG...	T	1.047e^-4	0.633	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9858621	3L_9858621_DEL [dm3] 3L_9865521_DEL [dm6]	CAG	C	1.054e^-4	0.635	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
3R	21702278	3R_21702278_SNP [dm3] 3R_25876556_SNP [dm6]	A	C	1.062e^-4	0.637	SYNONYMOUS_CODING Tsp96F	TF binding site BDTNP1_TFBS_twi
3R	20906623	3R_20906623_SNP [dm3] 3R_25080901_SNP [dm6]	T	A	1.063e^-4	0.637	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1434191	2L_1434191_SNP [dm3] 2L_1434191_SNP [dm6]	T	A	1.072e^-4	0.64	INTERGENIC	TF binding site mE1_TFBS_cad
X	12589264	X_12589264_SNP [dm3] X_12695231_SNP [dm6]	A	G	1.078e^-4	0.642	INTRON Smr
2L	8224915	2L_8224915_SNP [dm3] 2L_8224915_SNP [dm6]	G	A	1.082e^-4	0.642	SYNONYMOUS_CODING Pvr
2R	18072350	2R_18072350_SNP [dm3] 2R_22184845_SNP [dm6]	C	T	1.097e^-4	0.642	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9308579	2R_9308579_SNP [dm3] 2R_13421074_SNP [dm6]	C	T	1.098e^-4	0.642	SYNONYMOUS_CODING CG42321
3R	19894978	3R_19894978_SNP [dm3] 3R_24069256_SNP [dm6]	T	A	1.098e^-4	0.642	INTRON 4EHP
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.101e^-4	0.642	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	7797822	3R_7797822_SNP [dm3] 3R_11972100_SNP [dm6]	C	T	1.102e^-4	0.642	SPLICE_SITE_REGION GC2 SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1 & 1 other
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	1.102e^-4	0.642	INTRON Octbeta2R
3L	6940298	3L_6940298_INS [dm3] 3L_6947198_INS [dm6]	A	ATA	1.114e^-4	0.647	INTRON tow
3R	11882674	3R_11882674_SNP [dm3] 3R_16056952_SNP [dm6]	A	T	1.122e^-4	0.649	INTRON msps
2R	19109672	2R_19109672_SNP [dm3] 2R_23222149_SNP [dm6]	G	T	1.129e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	1.134e^-4	0.65	INTERGENIC
3L	11450270	3L_11450270_SNP [dm3] 3L_11457170_SNP [dm6]	G	C	1.139e^-4	0.65	NON_SYNONYMOUS_CODING CG12289
3L	11450266	3L_11450266_SNP [dm3] 3L_11457166_SNP [dm6]	A	G	1.140e^-4	0.65	NON_SYNONYMOUS_CODING CG12289
3R	7790367	3R_7790367_SNP [dm3] 3R_11964645_SNP [dm6]	A	G	1.141e^-4	0.65	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
3R	11895808	3R_11895808_SNP [dm3] 3R_16070086_SNP [dm6]	T	C	1.149e^-4	0.65	INTRON Mhcl	TF binding site mE1_TFBS_cad
3L	6548115	3L_6548115_SNP [dm3] 3L_6555015_SNP [dm6]	T	C	1.153e^-4	0.65	INTRON CG18769
2L	6887676	2L_6887676_SNP [dm3] 2L_6887676_SNP [dm6]	A	T	1.155e^-4	0.65	INTRON Nlg2
2L	11490371	2L_11490371_SNP [dm3] 2L_11490371_SNP [dm6]	A	G	1.158e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5881019	3L_5881019_SNP [dm3] 3L_5887919_SNP [dm6]	T	A	1.158e^-4	0.65	INTERGENIC
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	1.170e^-4	0.65	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6381124	3R_6381124_SNP [dm3] 3R_10555402_SNP [dm6]	A	G	1.172e^-4	0.65	INTRON hth
3R	25144575	3R_25144575_SNP [dm3] 3R_29318853_SNP [dm6]	T	G	1.177e^-4	0.65	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6940329	3L_6940329_DEL [dm3] 3L_6947229_DEL [dm6]	ACA	A	1.177e^-4	0.65	INTRON tow
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	1.186e^-4	0.65	INTERGENIC
2R	9974029	2R_9974029_SNP [dm3] 2R_14086524_SNP [dm6]	G	T	1.187e^-4	0.65	INTRON Prosap
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	1.187e^-4	0.65	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	628269	3L_628269_SNP [dm3] 3L_628269_SNP [dm6]	G	C	1.198e^-4	0.65	UPSTREAM CR43334 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8782225	3R_8782225_SNP [dm3] 3R_12956503_SNP [dm6]	A	G	1.199e^-4	0.65	INTRON grsm
3R	16733931	3R_16733931_SNP [dm3] 3R_20908209_SNP [dm6]	C	G	1.215e^-4	0.65	UTR_3_PRIME CG5621
2R	11389015	2R_11389015_SNP [dm3] 2R_15501510_SNP [dm6]	T	A	1.216e^-4	0.65	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
2R	11388985	2R_11388985_SNP [dm3] 2R_15501480_SNP [dm6]	T	C	1.217e^-4	0.65	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
2R	18696731	2R_18696731_SNP [dm3] 2R_22809226_SNP [dm6]	T	A	1.217e^-4	0.65	INTRON stl	TF binding site BDTNP1_TFBS_twi
2R	11959094	2R_11959094_SNP [dm3] 2R_16071589_SNP [dm6]	G	A	1.218e^-4	0.65	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16733768	3R_16733768_SNP [dm3] 3R_20908046_SNP [dm6]	A	G	1.221e^-4	0.65	SYNONYMOUS_CODING CG5621 UTR_3_PRIME CG5621
2L	886010	2L_886010_SNP [dm3] 2L_886010_SNP [dm6]	G	A	1.222e^-4	0.65	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8440015	3R_8440015_SNP [dm3] 3R_12614293_SNP [dm6]	G	C	1.222e^-4	0.65	INTERGENIC
3L	8214115	3L_8214115_SNP [dm3] 3L_8221015_SNP [dm6]	G	T	1.231e^-4	0.65	INTERGENIC
2R	10731047	2R_10731047_SNP [dm3] 2R_14843542_SNP [dm6]	T	C	1.234e^-4	0.65	SYNONYMOUS_CODING NaPi-T
3R	22703858	3R_22703858_SNP [dm3] 3R_26878136_SNP [dm6]	C	G	1.234e^-4	0.65	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
3R	8771941	3R_8771941_SNP [dm3] 3R_12946219_SNP [dm6]	G	A	1.240e^-4	0.65	INTERGENIC
2L	14944137	2L_14944137_SNP [dm3] 2L_14944137_SNP [dm6]	T	C	1.243e^-4	0.65	INTRON CG42313
3L	5361750	3L_5361750_SNP [dm3] 3L_5368650_SNP [dm6]	G	A	1.244e^-4	0.65	UPSTREAM CG10635 & 1 other INTERGENIC
2L	21979189	2L_21979189_SNP [dm3] 2L_21979189_SNP [dm6]	A	T	1.249e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13819846	2L_13819846_SNP [dm3] 2L_13819846_SNP [dm6]	A	G	1.252e^-4	0.65	DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17424659	2R_17424659_SNP [dm3] 2R_21537154_SNP [dm6]	A	T	1.254e^-4	0.65	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	1.254e^-4	0.65	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.255e^-4	0.65	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18836662	3L_18836662_SNP [dm3] 3L_18843562_SNP [dm6]	G	A	1.260e^-4	0.651	DOWNSTREAM CR32027 INTRON Indy
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	1.270e^-4	0.654	UPSTREAM CG3306 & 1 other INTERGENIC
3L	3659035	3L_3659035_SNP [dm3] 3L_3659035_SNP [dm6]	C	A	1.288e^-4	0.662	UPSTREAM CG43098 INTERGENIC
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	1.293e^-4	0.662	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17317385	3R_17317385_SNP [dm3] 3R_21491663_SNP [dm6]	C	G	1.304e^-4	0.665	INTERGENIC
3L	15144363	3L_15144363_DEL [dm3] 3L_15151263_DEL [dm6]	TAAAATCAAATCACAAATGT...	T	1.305e^-4	0.665	INTRON FucTA
3R	17481292	3R_17481292_SNP [dm3] 3R_21655570_SNP [dm6]	A	T	1.307e^-4	0.665	INTRON E2f	TF binding site BDTNP1_TFBS_da
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	1.321e^-4	0.667	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2992422	X_2992422_SNP [dm3] X_3098389_SNP [dm6]	A	T	1.322e^-4	0.667	INTRON kirre	regulatory region REDfly_CRMs
2L	22022061	2L_22022061_SNP [dm3] 2L_22022061_SNP [dm6]	T	A	1.330e^-4	0.667	NON_SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad
3L	18831598	3L_18831598_SNP [dm3] 3L_18838498_SNP [dm6]	A	T	1.334e^-4	0.667	INTRON Indy	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8810453	3R_8810453_SNP [dm3] 3R_12984731_SNP [dm6]	C	A	1.334e^-4	0.667	UTR_3_PRIME Paip2 DOWNSTREAM Paip2
2L	11490344	2L_11490344_SNP [dm3] 2L_11490344_SNP [dm6]	G	A	1.339e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	1.342e^-4	0.667	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	20906631	3R_20906631_DEL [dm3] 3R_25080909_DEL [dm6]	TA	T	1.342e^-4	0.667	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	1.343e^-4	0.667	INTRON salm	TF binding site mE1_TFBS_inv
2R	15420726	2R_15420726_SNP [dm3] 2R_19533221_SNP [dm6]	T	A	1.347e^-4	0.667	INTRON sm
3R	11599774	3R_11599774_SNP [dm3] 3R_15774052_SNP [dm6]	C	T	1.352e^-4	0.667	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	7026683	3R_7026683_SNP [dm3] 3R_11200961_SNP [dm6]	A	C	1.356e^-4	0.667	INTRON cu
3L	9898595	3L_9898595_DEL [dm3] 3L_9905495_DEL [dm6]	CAGCTGCAGC	A	1.374e^-4	0.669	INTERGENIC
2R	13772409	2R_13772409_SNP [dm3] 2R_17884904_SNP [dm6]	C	G	1.378e^-4	0.669	INTRON Elk
2R	9896969	2R_9896969_SNP [dm3] 2R_14009464_SNP [dm6]	C	T	1.380e^-4	0.669	UTR_5_PRIME mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	937880	3L_937880_SNP [dm3] 3L_937880_SNP [dm6]	G	A	1.382e^-4	0.669	INTRON Glut1
2L	11200150	2L_11200150_SNP [dm3] 2L_11200150_SNP [dm6]	C	T	1.382e^-4	0.669	INTRON Ca-beta
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	1.384e^-4	0.669	INTERGENIC
3R	7798152	3R_7798152_SNP [dm3] 3R_11972430_SNP [dm6]	G	T	1.385e^-4	0.669	SYNONYMOUS_CODING GC2 DOWNSTREAM GC1 & 1 other
2R	16950014	2R_16950014_SNP [dm3] 2R_21062509_SNP [dm6]	G	A	1.397e^-4	0.671	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.397e^-4	0.671	INTRON fru
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	1.399e^-4	0.671	INTRON CadN
3R	8779739	3R_8779739_SNP [dm3] 3R_12954017_SNP [dm6]	G	A	1.407e^-4	0.673	INTRON grsm
2R	20011337	2R_20011337_SNP [dm3] 2R_24123814_SNP [dm6]	T	C	1.412e^-4	0.673	SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	1.416e^-4	0.673	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3L	12081577	3L_12081577_SNP [dm3] 3L_12088477_SNP [dm6]	T	C	1.416e^-4	0.673	UPSTREAM CG17154 INTERGENIC
X	17708376	X_17708376_SNP [dm3] X_17814343_SNP [dm6]	A	C	1.425e^-4	0.675	DOWNSTREAM OdsH INTERGENIC
2L	11365771	2L_11365771_SNP [dm3] 2L_11365771_SNP [dm6]	G	T	1.429e^-4	0.675	INTRON salr
X	8292611	X_8292611_SNP [dm3] X_8398578_SNP [dm6]	C	G	1.439e^-4	0.677	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9898580	3L_9898580_DEL [dm3] 3L_9905480_DEL [dm6]	TATTTGTTCAC...	T	1.443e^-4	0.677	INTERGENIC
3R	26006739	3R_26006739_SNP [dm3] 3R_30181017_SNP [dm6]	T	C	1.445e^-4	0.677	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
2L	6887659	2L_6887659_SNP [dm3] 2L_6887659_SNP [dm6]	T	C	1.449e^-4	0.677	INTRON Nlg2
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	1.453e^-4	0.677	UTR_5_PRIME CG15186
3R	8782468	3R_8782468_SNP [dm3] 3R_12956746_SNP [dm6]	C	A	1.454e^-4	0.677	INTRON grsm
3R	8446274	3R_8446274_SNP [dm3] 3R_12620552_SNP [dm6]	C	T	1.465e^-4	0.679	INTERGENIC
3L	9898607	3L_9898607_SNP [dm3] 3L_9905507_SNP [dm6]	A	G	1.467e^-4	0.679	INTERGENIC
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	1.469e^-4	0.679	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16863957	2L_16863957_SNP [dm3] 2L_16863957_SNP [dm6]	A	C	1.475e^-4	0.679	INTERGENIC
3L	9094933	3L_9094933_SNP [dm3] 3L_9101833_SNP [dm6]	C	T	1.481e^-4	0.679	UTR_3_PRIME bol
2L	5815336	2L_5815336_SNP [dm3] 2L_5815336_SNP [dm6]	C	T	1.483e^-4	0.679	INTERGENIC
3R	23663322	3R_23663322_SNP [dm3] 3R_27837600_SNP [dm6]	T	C	1.486e^-4	0.679	INTRON CG34353
3R	13103210	3R_13103210_SNP [dm3] 3R_17277488_SNP [dm6]	A	G	1.498e^-4	0.679	INTERGENIC
2R	10132163	2R_10132163_SNP [dm3] 2R_14244658_SNP [dm6]	G	A	1.501e^-4	0.679	INTRON CG8503
2R	16966284	2R_16966284_SNP [dm3] 2R_21078779_SNP [dm6]	A	T	1.501e^-4	0.679	INTRON Treh
3L	14160357	3L_14160357_SNP [dm3] 3L_14167257_SNP [dm6]	T	C	1.509e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	1.516e^-4	0.679	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	1.517e^-4	0.679	INTERGENIC
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	1.523e^-4	0.679	INTERGENIC
2R	6555381	2R_6555381_SNP [dm3] 2R_10667876_SNP [dm6]	C	T	1.524e^-4	0.679	INTERGENIC
3R	7859559	3R_7859559_SNP [dm3] 3R_12033837_SNP [dm6]	T	C	1.527e^-4	0.679	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9632931	2L_9632931_SNP [dm3] 2L_9632931_SNP [dm6]	A	T	1.529e^-4	0.679	INTERGENIC
2L	4648529	2L_4648529_DEL [dm3] 2L_4648529_DEL [dm6]	ACCGAGA	A	1.530e^-4	0.679	DOWNSTREAM CG43798 INTERGENIC
2L	4570446	2L_4570446_SNP [dm3] 2L_4570446_SNP [dm6]	G	C	1.540e^-4	0.679	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11468264	2L_11468264_SNP [dm3] 2L_11468264_SNP [dm6]	A	G	1.541e^-4	0.679	INTERGENIC
3R	9423421	3R_9423421_DEL [dm3] 3R_13597699_DEL [dm6]	ATGAAGGATATTTGATATTT...	A	1.548e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1848084	3L_1848084_SNP [dm3] 3L_1848084_SNP [dm6]	G	A	1.554e^-4	0.679	INTERGENIC
2L	2080518	2L_2080518_SNP [dm3] 2L_2080518_SNP [dm6]	C	G	1.556e^-4	0.679	NON_SYNONYMOUS_CODING CG12674 INTRON dpr3
X	2286485	X_2286485_SNP [dm3] X_2392452_SNP [dm6]	T	C	1.560e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8137315	2R_8137315_SNP [dm3] 2R_12249810_SNP [dm6]	G	A	1.566e^-4	0.679	INTERGENIC
3R	13328042	3R_13328042_SNP [dm3] 3R_17502320_SNP [dm6]	T	G	1.567e^-4	0.679	INTRON Dscam3
3R	8108330	3R_8108330_SNP [dm3] 3R_12282608_SNP [dm6]	C	T	1.568e^-4	0.679	INTRON svp
3R	25118028	3R_25118028_SNP [dm3] 3R_29292306_SNP [dm6]	G	T	1.578e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21979204	2L_21979204_SNP [dm3] 2L_21979204_SNP [dm6]	T	A	1.580e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	1.581e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	1.585e^-4	0.679	INTERGENIC
3R	8651597	3R_8651597_DEL [dm3] 3R_12825875_DEL [dm6]	ATTGCTAAT	A	1.597e^-4	0.679	INTERGENIC
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	1.604e^-4	0.679	INTRON ush	regulatory region REDfly_CRMs
3L	16977866	3L_16977866_SNP [dm3] 3L_16984766_SNP [dm6]	G	A	1.606e^-4	0.679	INTRON Exn
3R	21246436	3R_21246436_SNP [dm3] 3R_25420714_SNP [dm6]	T	A	1.606e^-4	0.679	INTRON Fur1
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	1.620e^-4	0.679	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18571285	2R_18571285_SNP [dm3] 2R_22683780_SNP [dm6]	C	G	1.622e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	14300571	2L_14300571_SNP [dm3] 2L_14300571_SNP [dm6]	G	T	1.622e^-4	0.679	UPSTREAM wb INTRON wb	TF binding site mE1_TFBS_Trl
X	19430764	X_19430764_SNP [dm3] X_19536731_SNP [dm6]	C	A	1.623e^-4	0.679	INTRON CG32532
X	8782695	X_8782695_SNP [dm3] X_8888662_SNP [dm6]	C	T	1.623e^-4	0.679	INTRON Moe
2R	8145258	2R_8145258_SNP [dm3] 2R_12257753_SNP [dm6]	A	G	1.626e^-4	0.679	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
3R	6505177	3R_6505177_SNP [dm3] 3R_10679455_SNP [dm6]	A	T	1.629e^-4	0.679	INTRON CG14688
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	1.630e^-4	0.679	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
3R	16733992	3R_16733992_SNP [dm3] 3R_20908270_SNP [dm6]	G	T	1.635e^-4	0.679	DOWNSTREAM CG31191 & 1 other INTERGENIC	transposable element FlyBase
3R	7853617	3R_7853617_SNP [dm3] 3R_12027895_SNP [dm6]	G	A	1.636e^-4	0.679	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
2L	11447058	2L_11447058_SNP [dm3] 2L_11447058_SNP [dm6]	C	A	1.640e^-4	0.679	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3487943	3R_3487943_DEL [dm3] 3R_7662221_DEL [dm6]	CCTCGTGTTTTTC...	C	1.642e^-4	0.679	INTRON Nlg1
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	1.643e^-4	0.679	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12896929	3L_12896929_SNP [dm3] 3L_12903829_SNP [dm6]	A	T	1.645e^-4	0.679	UPSTREAM CG32117 INTERGENIC
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	1.645e^-4	0.679	INTERGENIC
3R	25144627	3R_25144627_SNP [dm3] 3R_29318905_SNP [dm6]	T	C	1.651e^-4	0.679	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11299436	3L_11299436_INS [dm3] 3L_11306336_INS [dm6]	A	AT	1.651e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16733907	3R_16733907_SNP [dm3] 3R_20908185_SNP [dm6]	C	T	1.652e^-4	0.679	UTR_3_PRIME CG5621
3R	11885217	3R_11885217_SNP [dm3] 3R_16059495_SNP [dm6]	C	T	1.654e^-4	0.679	SYNONYMOUS_CODING msps
3R	11639782	3R_11639782_SNP [dm3] 3R_15814060_SNP [dm6]	C	T	1.665e^-4	0.68	INTRON alpha-Man-IIb
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	1.666e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8715015	2L_8715015_SNP [dm3] 2L_8715015_SNP [dm6]	T	A	1.668e^-4	0.68	UPSTREAM raw INTRON raw
3R	21249851	3R_21249851_SNP [dm3] 3R_25424129_SNP [dm6]	A	G	1.675e^-4	0.68	INTRON Fur1
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	1.683e^-4	0.68	UTR_3_PRIME Ack DOWNSTREAM Chd64
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	1.690e^-4	0.68	DOWNSTREAM PpN58A INTRON Fili
3R	8607922	3R_8607922_SNP [dm3] 3R_12782200_SNP [dm6]	G	A	1.691e^-4	0.68	INTRON beat-Vc
3R	8807281	3R_8807281_SNP [dm3] 3R_12981559_SNP [dm6]	G	A	1.694e^-4	0.68	INTRON Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	25043855	3R_25043855_SNP [dm3] 3R_29218133_SNP [dm6]	C	A	1.698e^-4	0.68	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6739312	3R_6739312_SNP [dm3] 3R_10913590_SNP [dm6]	C	A	1.700e^-4	0.68	INTERGENIC
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	1.704e^-4	0.68	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	1.706e^-4	0.68	INTRON dpr10
3R	7755363	3R_7755363_SNP [dm3] 3R_11929641_SNP [dm6]	A	T	1.715e^-4	0.68	INTRON Cad87A
2L	10065597	2L_10065597_INS [dm3] 2L_10065597_INS [dm6]	T	TCGACACTTTTT...	1.716e^-4	0.68	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7796214	3R_7796214_SNP [dm3] 3R_11970492_SNP [dm6]	A	G	1.717e^-4	0.68	SYNONYMOUS_CODING GC1
2L	496329	2L_496329_SNP [dm3] 2L_496329_SNP [dm6]	G	A	1.723e^-4	0.68	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8561205	3R_8561205_SNP [dm3] 3R_12735483_SNP [dm6]	A	T	1.724e^-4	0.68	INTERGENIC
3L	18836900	3L_18836900_SNP [dm3] 3L_18843800_SNP [dm6]	G	A	1.725e^-4	0.68	INTRON Indy
2L	528185	2L_528185_SNP [dm3] 2L_528185_SNP [dm6]	G	A	1.735e^-4	0.68	INTRON ush	regulatory region REDfly_CRMs
2R	12116087	2R_12116087_SNP [dm3] 2R_16228582_SNP [dm6]	T	C	1.741e^-4	0.68	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18834472	3L_18834472_SNP [dm3] 3L_18841372_SNP [dm6]	C	G	1.742e^-4	0.68	UTR_5_PRIME Indy UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3029339	3L_3029339_SNP [dm3] 3L_3029339_SNP [dm6]	C	T	1.742e^-4	0.68	INTERGENIC
X	1266464	X_1266464_SNP [dm3] X_1372431_SNP [dm6]	T	C	1.748e^-4	0.68	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8948823	2L_8948823_SNP [dm3] 2L_8948823_SNP [dm6]	G	A	1.749e^-4	0.68	INTRON C1GalTA
3R	9875079	3R_9875079_SNP [dm3] 3R_14049357_SNP [dm6]	A	T	1.755e^-4	0.68	INTERGENIC
2L	8370580	2L_8370580_SNP [dm3] 2L_8370580_SNP [dm6]	G	T	1.757e^-4	0.68	UTR_5_PRIME CG17292 DOWNSTREAM Pp2A-29B EXON CR45341
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	1.759e^-4	0.68	UPSTREAM CG6527 INTRON A2bp1
3L	16977840	3L_16977840_SNP [dm3] 3L_16984740_SNP [dm6]	C	A	1.769e^-4	0.68	INTRON Exn
2R	5018429	2R_5018429_SNP [dm3] 2R_9130924_SNP [dm6]	T	A	1.772e^-4	0.68	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6194790	2L_6194790_SNP [dm3] 2L_6194790_SNP [dm6]	C	T	1.773e^-4	0.68	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3L	9552632	3L_9552632_SNP [dm3] 3L_9559532_SNP [dm6]	T	C	1.774e^-4	0.68	INTRON CG42673
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	1.778e^-4	0.68	UTR_3_PRIME CG9970 INTRON Shab
3R	11902980	3R_11902980_SNP [dm3] 3R_16077258_SNP [dm6]	C	T	1.779e^-4	0.68	SYNONYMOUS_CODING Mhcl
2L	9364916	2L_9364916_SNP [dm3] 2L_9364916_SNP [dm6]	G	C	1.780e^-4	0.68	EXON CR43404
3R	12680293	3R_12680293_SNP [dm3] 3R_16854571_SNP [dm6]	C	G	1.798e^-4	0.685	DOWNSTREAM iab-8 INTRON iab-8 & 1 other EXON iab-4
3R	7026916	3R_7026916_SNP [dm3] 3R_11201194_SNP [dm6]	G	C	1.805e^-4	0.686	INTRON cu
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	1.808e^-4	0.686	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2R	8145252	2R_8145252_SNP [dm3] 2R_12257747_SNP [dm6]	G	C	1.818e^-4	0.688	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	1.822e^-4	0.688	INTRON mAChR-A	TF binding site mE1_TFBS_cad
3L	5817337	3L_5817337_SNP [dm3] 3L_5824237_SNP [dm6]	T	C	1.826e^-4	0.688	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	1.830e^-4	0.688	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4917435	3L_4917435_SNP [dm3] 3L_4917435_SNP [dm6]	G	A	1.834e^-4	0.688	INTRON Rh50	TF binding site mE1_TFBS_chinmo
2L	11378536	2L_11378536_SNP [dm3] 2L_11378536_SNP [dm6]	A	C	1.836e^-4	0.688	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	23208507	3R_23208507_SNP [dm3] 3R_27382785_SNP [dm6]	G	A	1.846e^-4	0.688	INTRON side	TF binding site mE1_TFBS_chinmo
3R	22753405	3R_22753405_SNP [dm3] 3R_26927683_SNP [dm6]	T	A	1.846e^-4	0.688	INTRON sda
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	1.848e^-4	0.688	INTRON capu	TF binding site mE1_TFBS_bab1
3R	8775774	3R_8775774_SNP [dm3] 3R_12950052_SNP [dm6]	C	G	1.851e^-4	0.688	UTR_3_PRIME grsm
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	1.853e^-4	0.688	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16391224	3R_16391224_SNP [dm3] 3R_20565502_SNP [dm6]	G	A	1.855e^-4	0.688	UPSTREAM CG5191 INTRON CG5191	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	6864931	3L_6864931_SNP [dm3] 3L_6871831_SNP [dm6]	G	A	1.860e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	1.867e^-4	0.688	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25080196	3R_25080196_SNP [dm3] 3R_29254474_SNP [dm6]	C	G	1.869e^-4	0.688	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12347759	3L_12347759_SNP [dm3] 3L_12354659_SNP [dm6]	G	A	1.873e^-4	0.688	INTERGENIC
3R	8773063	3R_8773063_DEL [dm3] 3R_12947341_DEL [dm6]	ACGCCTCACAGCCGGCTTAA...	A	1.877e^-4	0.688	INTERGENIC
3R	22938942	3R_22938942_SNP [dm3] 3R_27113220_SNP [dm6]	G	A	1.878e^-4	0.688	SYNONYMOUS_CODING CG5815 UPSTREAM gb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5724242	X_5724242_SNP [dm3] X_5830209_SNP [dm6]	G	C	1.893e^-4	0.689	INTRON CG15765
2R	14023044	2R_14023044_SNP [dm3] 2R_18135539_SNP [dm6]	C	G	1.893e^-4	0.689	UTR_5_PRIME Pcl UPSTREAM Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1266374	X_1266374_SNP [dm3] X_1372341_SNP [dm6]	G	C	1.898e^-4	0.689	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16039677	2L_16039677_SNP [dm3] 2L_16039677_SNP [dm6]	C	G	1.900e^-4	0.689	UTR_3_PRIME beat-Ic	TF binding site mE1_TFBS_cad
3R	7836671	3R_7836671_SNP [dm3] 3R_12010949_SNP [dm6]	A	G	1.900e^-4	0.689	NON_SYNONYMOUS_CODING GCC185 UPSTREAM KLHL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7593437	2L_7593437_DEL [dm3] 2L_7593437_DEL [dm6]	CCACTCGC	C	1.905e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11450245	3L_11450245_SNP [dm3] 3L_11457145_SNP [dm6]	T	C	1.913e^-4	0.689	UTR_3_PRIME CG12289
2R	11389019	2R_11389019_SNP [dm3] 2R_15501514_SNP [dm6]	A	C	1.914e^-4	0.689	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
2R	16056059	2R_16056059_DEL [dm3] 2R_20168554_DEL [dm6]	GGCTAGATG	G	1.914e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	1.920e^-4	0.689	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14300591	2L_14300591_SNP [dm3] 2L_14300591_SNP [dm6]	T	C	1.925e^-4	0.689	UPSTREAM wb INTRON wb	TF binding site mE1_TFBS_Trl
2L	12801678	2L_12801678_SNP [dm3] 2L_12801678_SNP [dm6]	G	T	1.925e^-4	0.689	INTERGENIC
3R	8779105	3R_8779105_SNP [dm3] 3R_12953383_SNP [dm6]	A	T	1.932e^-4	0.69	INTRON grsm
X	17366962	X_17366962_SNP [dm3] X_17472929_SNP [dm6]	T	A	1.936e^-4	0.691	INTRON CG43658	TF binding site mE1_TFBS_cad
X	9093714	X_9093714_SNP [dm3] X_9199681_SNP [dm6]	G	A	1.943e^-4	0.692	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	1.951e^-4	0.693	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2L	12801677	2L_12801677_SNP [dm3] 2L_12801677_SNP [dm6]	C	G	1.953e^-4	0.693	INTERGENIC
3R	8773216	3R_8773216_SNP [dm3] 3R_12947494_SNP [dm6]	G	A	1.970e^-4	0.695	INTERGENIC
3R	7691583	3R_7691583_SNP [dm3] 3R_11865861_SNP [dm6]	G	C	1.972e^-4	0.695	INTRON CG6959
3R	2323740	3R_2323740_SNP [dm3] 3R_6498018_SNP [dm6]	C	A	1.978e^-4	0.695	INTERGENIC
2R	14023413	2R_14023413_SNP [dm3] 2R_18135908_SNP [dm6]	C	A	1.978e^-4	0.695	UTR_5_PRIME Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	1.980e^-4	0.695	INTERGENIC
3R	23500234	3R_23500234_SNP [dm3] 3R_27674512_SNP [dm6]	C	T	1.989e^-4	0.695	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	1654714	2L_1654714_INS [dm3] 2L_1654714_INS [dm6]	A	AA	2.002e^-4	0.695	INTRON chinmo
2R	10132377	2R_10132377_SNP [dm3] 2R_14244872_SNP [dm6]	G	A	2.005e^-4	0.695	SYNONYMOUS_CODING CG8503
2R	3041181	2R_3041181_SNP [dm3] 2R_7153676_SNP [dm6]	T	C	2.012e^-4	0.695	UPSTREAM Spn43Ab DOWNSTREAM Spn43Ad INTRON pk
3R	17250836	3R_17250836_DEL [dm3] 3R_21425114_DEL [dm6]	TT	A	2.017e^-4	0.695	INTRON lbl
3R	24848600	3R_24848600_SNP [dm3] 3R_29022878_SNP [dm6]	T	G	2.017e^-4	0.695	UPSTREAM CR44264 EXON CR45567
X	5685823	X_5685823_SNP [dm3] X_5791790_SNP [dm6]	C	T	2.021e^-4	0.695	UPSTREAM CG12239 & 1 other DOWNSTREAM mir-4963 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14504852	3R_14504852_SNP [dm3] 3R_18679130_SNP [dm6]	A	T	2.022e^-4	0.695	INTRON CG7706	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	2.037e^-4	0.695	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	2.039e^-4	0.695	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	2.039e^-4	0.695	INTRON Dscam4
2R	16225493	2R_16225493_SNP [dm3] 2R_20337988_SNP [dm6]	G	C	2.040e^-4	0.695	INTERGENIC
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	2.041e^-4	0.695	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	2.051e^-4	0.695	UPSTREAM CG3306 & 1 other INTERGENIC
2L	11378528	2L_11378528_SNP [dm3] 2L_11378528_SNP [dm6]	C	T	2.052e^-4	0.695	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	7851906	3L_7851906_INS [dm3] 3L_7858806_INS [dm6]	A	ATACATATA	2.053e^-4	0.695	INTRON Pdp1
2L	14956753	2L_14956753_SNP [dm3] 2L_14956753_SNP [dm6]	G	T	2.056e^-4	0.695	INTRON CG42313
2R	3860712	2R_3860712_SNP [dm3] 2R_7973207_SNP [dm6]	C	A	2.065e^-4	0.695	DOWNSTREAM ACC INTRON CSN4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11599756	3R_11599756_SNP [dm3] 3R_15774034_SNP [dm6]	A	G	2.066e^-4	0.695	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	9174258	3R_9174258_SNP [dm3] 3R_13348536_SNP [dm6]	A	T	2.071e^-4	0.695	INTERGENIC
3R	24700490	3R_24700490_SNP [dm3] 3R_28874768_SNP [dm6]	C	T	2.072e^-4	0.695	SYNONYMOUS_CODING CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	2.089e^-4	0.695	UPSTREAM CG10635 & 1 other INTERGENIC
2R	8876531	2R_8876531_SNP [dm3] 2R_12989026_SNP [dm6]	A	C	2.089e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25121877	3R_25121877_SNP [dm3] 3R_29296155_SNP [dm6]	G	A	2.095e^-4	0.695	SYNONYMOUS_CODING CG14506
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	2.096e^-4	0.695	UPSTREAM CG11686 & 1 other INTERGENIC
3L	18687881	3L_18687881_SNP [dm3] 3L_18694781_SNP [dm6]	A	T	2.099e^-4	0.695	SYNONYMOUS_CODING CG6893 UPSTREAM CR43987
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	2.109e^-4	0.695	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
2L	10832406	2L_10832406_SNP [dm3] 2L_10832406_SNP [dm6]	C	T	2.113e^-4	0.695	INTRON Nos
2R	18074295	2R_18074295_SNP [dm3] 2R_22186790_SNP [dm6]	G	A	2.115e^-4	0.695	SYNONYMOUS_CODING Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25081143	3R_25081143_SNP [dm3] 3R_29255421_SNP [dm6]	T	C	2.121e^-4	0.695	UTR_5_PRIME stg UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5026100	2R_5026100_SNP [dm3] 2R_9138595_SNP [dm6]	T	C	2.121e^-4	0.695	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11882689	3R_11882689_SNP [dm3] 3R_16056967_SNP [dm6]	T	A	2.122e^-4	0.695	INTRON msps
2R	5049532	2R_5049532_DEL [dm3] 2R_9162027_DEL [dm6]	CGCTATAATTATAATGGTAT...	C	2.124e^-4	0.695	UTR_3_PRIME CG8046 UPSTREAM CG8008 DOWNSTREAM CG8046 & 1 other INTRAGENIC CG8046 INTERGENIC
3R	8798173	3R_8798173_SNP [dm3] 3R_12972451_SNP [dm6]	G	C	2.125e^-4	0.695	UPSTREAM CG7381 INTRON CG7381
3L	11296220	3L_11296220_SNP [dm3] 3L_11303120_SNP [dm6]	T	A	2.128e^-4	0.695	INTERGENIC
2L	14960510	2L_14960510_SNP [dm3] 2L_14960510_SNP [dm6]	A	C	2.129e^-4	0.695	INTRON CG42313
3R	8387086	3R_8387086_SNP [dm3] 3R_12561364_SNP [dm6]	T	C	2.131e^-4	0.695	UTR_5_PRIME Octbeta2R UPSTREAM Octbeta2R
3L	4109655	3L_4109655_SNP [dm3] 3L_4109655_SNP [dm6]	G	T	2.131e^-4	0.695	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4901907	2L_4901907_SNP [dm3] 2L_4901907_SNP [dm6]	C	T	2.134e^-4	0.695	SYNONYMOUS_CODING CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10322589	3L_10322589_INS [dm3] 3L_10329489_INS [dm6]	A	AG	2.139e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2L	3308228	2L_3308228_SNP [dm3] 2L_3308228_SNP [dm6]	G	A	2.142e^-4	0.695	UPSTREAM CG15406 INTRON CG3277
3R	8801937	3R_8801937_SNP [dm3] 3R_12976215_SNP [dm6]	G	A	2.154e^-4	0.695	INTRON CG7381
3R	23700234	3R_23700234_SNP [dm3] 3R_27874512_SNP [dm6]	A	C	2.165e^-4	0.695	INTRON CG34353
2L	507635	2L_507635_SNP [dm3] 2L_507635_SNP [dm6]	A	C	2.167e^-4	0.695	INTRON ush
2L	5725748	2L_5725748_SNP [dm3] 2L_5725748_SNP [dm6]	A	C	2.176e^-4	0.695	DOWNSTREAM CG14006 INTRON CG11030
3R	8612466	3R_8612466_SNP [dm3] 3R_12786744_SNP [dm6]	T	G	2.178e^-4	0.695	INTERGENIC
2L	6139569	2L_6139569_SNP [dm3] 2L_6139569_SNP [dm6]	C	T	2.179e^-4	0.695	SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_twi
2L	2846181	2L_2846181_SNP [dm3] 2L_2846181_SNP [dm6]	G	C	2.182e^-4	0.695	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2R	19501790	2R_19501790_SNP [dm3] 2R_23614267_SNP [dm6]	G	T	2.183e^-4	0.695	INTRON CG17664 & 1 other
2L	6887682	2L_6887682_SNP [dm3] 2L_6887682_SNP [dm6]	C	A	2.184e^-4	0.695	INTRON Nlg2
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	2.185e^-4	0.695	UPSTREAM hoe1 INTRON hoe1
3L	4037800	3L_4037800_SNP [dm3] 3L_4037800_SNP [dm6]	C	G	2.189e^-4	0.695	UTR_3_PRIME CG11593 DOWNSTREAM Gr64f
3L	6098370	3L_6098370_SNP [dm3] 3L_6105270_SNP [dm6]	A	T	2.190e^-4	0.695	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12448636	2L_12448636_SNP [dm3] 2L_12448636_SNP [dm6]	A	G	2.194e^-4	0.695	UTR_5_PRIME Oatp33Eb UPSTREAM CG5421
X	18372514	X_18372514_SNP [dm3] X_18478481_SNP [dm6]	G	A	2.196e^-4	0.695	INTRON CG32547
3R	9811583	3R_9811583_SNP [dm3] 3R_13985861_SNP [dm6]	C	A	2.212e^-4	0.695	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7439171	2R_7439171_SNP [dm3] 2R_11551666_SNP [dm6]	C	T	2.223e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20888285	X_20888285_SNP [dm3] X_21017258_SNP [dm6]	A	G	2.223e^-4	0.695	INTERGENIC
2R	18698380	2R_18698380_SNP [dm3] 2R_22810875_SNP [dm6]	T	G	2.227e^-4	0.695	INTRON stl
3L	11299407	3L_11299407_SNP [dm3] 3L_11306307_SNP [dm6]	G	T	2.227e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_cad
X	3791712	X_3791712_SNP [dm3] X_3897679_SNP [dm6]	G	T	2.230e^-4	0.695	INTRON CG42541
3R	7794857	3R_7794857_SNP [dm3] 3R_11969135_SNP [dm6]	A	C	2.231e^-4	0.695	INTRON GC1
2L	11490748	2L_11490748_SNP [dm3] 2L_11490748_SNP [dm6]	C	T	2.248e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9308609	2R_9308609_SNP [dm3] 2R_13421104_SNP [dm6]	T	C	2.250e^-4	0.695	SYNONYMOUS_CODING CG42321
2R	5028422	2R_5028422_SNP [dm3] 2R_9140917_SNP [dm6]	C	T	2.255e^-4	0.695	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	2.258e^-4	0.695	INTERGENIC
3R	13103308	3R_13103308_DEL [dm3] 3R_17277586_DEL [dm6]	TTCCTA	T	2.264e^-4	0.695	INTERGENIC
2L	11754400	2L_11754400_SNP [dm3] 2L_11754400_SNP [dm6]	C	A	2.273e^-4	0.695	UPSTREAM CG42470 & 1 other INTRON Sfp33A1
2R	19429469	2R_19429469_SNP [dm3] 2R_23541946_SNP [dm6]	A	T	2.277e^-4	0.695	NON_SYNONYMOUS_CODING Gr59e UPSTREAM Gr59f	TF binding site mE1_TFBS_cad
3L	13369853	3L_13369853_SNP [dm3] 3L_13376753_SNP [dm6]	A	C	2.278e^-4	0.695	INTERGENIC
X	7778947	X_7778947_SNP [dm3] X_7884914_SNP [dm6]	C	G	2.280e^-4	0.695	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
2L	10825197	2L_10825197_SNP [dm3] 2L_10825197_SNP [dm6]	T	A	2.285e^-4	0.695	INTRON Nos
2R	3787145	2R_3787145_SNP [dm3] 2R_7899640_SNP [dm6]	G	A	2.287e^-4	0.695	INTRON CG30377
3L	5877899	3L_5877899_SNP [dm3] 3L_5884799_SNP [dm6]	C	T	2.303e^-4	0.695	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	2.303e^-4	0.695	INTRON fru
X	16805594	X_16805594_INS [dm3] X_16911561_INS [dm6]	A	ACA	2.307e^-4	0.695	INTRON CR44754
3R	11419213	3R_11419213_SNP [dm3] 3R_15593491_SNP [dm6]	G	A	2.310e^-4	0.695	INTERGENIC
3R	8799862	3R_8799862_SNP [dm3] 3R_12974140_SNP [dm6]	G	A	2.311e^-4	0.695	INTRON CG7381
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	2.311e^-4	0.695	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	2.316e^-4	0.695	INTRON CG45186
3L	7224434	3L_7224434_SNP [dm3] 3L_7231334_SNP [dm6]	C	A	2.317e^-4	0.695	INTERGENIC
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	2.322e^-4	0.695	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	19611990	2R_19611990_SNP [dm3] 2R_23724467_SNP [dm6]	A	G	2.324e^-4	0.695	INTRON Sesn
X	7939533	X_7939533_SNP [dm3] X_8045500_SNP [dm6]	C	T	2.329e^-4	0.695	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3R	6570565	3R_6570565_SNP [dm3] 3R_10744843_SNP [dm6]	T	G	2.331e^-4	0.695	INTRON TkR86C
X	1269878	X_1269878_SNP [dm3] X_1375845_SNP [dm6]	T	C	2.333e^-4	0.695	UTR_5_PRIME AMPKalpha DOWNSTREAM ssx INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9148145	2R_9148145_SNP [dm3] 2R_13260640_SNP [dm6]	C	G	2.336e^-4	0.695	UTR_5_PRIME CG42319
3R	25121876	3R_25121876_SNP [dm3] 3R_29296154_SNP [dm6]	G	A	2.337e^-4	0.695	SYNONYMOUS_CODING CG14506
3L	9898608	3L_9898608_SNP [dm3] 3L_9905508_SNP [dm6]	C	G	2.338e^-4	0.695	INTERGENIC
2L	11441320	2L_11441320_INS [dm3] 2L_11441320_INS [dm6]	T	TACAGCT	2.341e^-4	0.695	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	8719424	X_8719424_SNP [dm3] X_8825391_SNP [dm6]	C	T	2.342e^-4	0.695	INTERGENIC
3R	21249708	3R_21249708_SNP [dm3] 3R_25423986_SNP [dm6]	A	T	2.343e^-4	0.695	INTRON Fur1
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	2.346e^-4	0.695	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7068840	2R_7068840_SNP [dm3] 2R_11181335_SNP [dm6]	T	C	2.348e^-4	0.695	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7068847	2R_7068847_SNP [dm3] 2R_11181342_SNP [dm6]	A	T	2.348e^-4	0.695	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5361956	3L_5361956_SNP [dm3] 3L_5368856_SNP [dm6]	C	A	2.353e^-4	0.695	UPSTREAM CG10635 & 1 other INTERGENIC
3R	6497271	3R_6497271_SNP [dm3] 3R_10671549_SNP [dm6]	A	T	2.355e^-4	0.695	INTERGENIC
3L	18831985	3L_18831985_DEL [dm3] 3L_18838885_DEL [dm6]	TT	T	2.361e^-4	0.695	INTRON Indy	TF binding site mE1_TFBS_zfh1
3L	9992225	3L_9992225_SNP [dm3] 3L_9999125_SNP [dm6]	T	G	2.363e^-4	0.695	INTRON dpr6
3L	5874709	3L_5874709_SNP [dm3] 3L_5881609_SNP [dm6]	G	A	2.367e^-4	0.695	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21244230	3R_21244230_SNP [dm3] 3R_25418508_SNP [dm6]	T	A	2.369e^-4	0.695	INTRON Fur1
2L	496322	2L_496322_SNP [dm3] 2L_496322_SNP [dm6]	C	T	2.372e^-4	0.695	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7117522	2L_7117522_DEL [dm3] 2L_7117522_DEL [dm6]	CC	C	2.378e^-4	0.695	INTRON Pvf3
2L	2961269	2L_2961269_SNP [dm3] 2L_2961269_SNP [dm6]	G	A	2.380e^-4	0.695	SYNONYMOUS_CODING Rbp9
2R	15194859	2R_15194859_SNP [dm3] 2R_19307354_SNP [dm6]	C	A	2.387e^-4	0.695	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
3R	17854690	3R_17854690_SNP [dm3] 3R_22028968_SNP [dm6]	T	C	2.389e^-4	0.695	SYNONYMOUS_CODING ND42 DOWNSTREAM CG13409	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	6860422	3R_6860422_SNP [dm3] 3R_11034700_SNP [dm6]	C	T	2.392e^-4	0.695	INTRON CG34114
3R	19324300	3R_19324300_DEL [dm3] 3R_23498578_DEL [dm6]	AATATCA	A	2.394e^-4	0.695	INTERGENIC
3R	8370522	3R_8370522_SNP [dm3] 3R_12544800_SNP [dm6]	C	T	2.396e^-4	0.695	INTRON Octbeta3R
X	12013084	X_12013084_SNP [dm3] X_12119051_SNP [dm6]	A	T	2.399e^-4	0.695	INTRON Ten-a
3L	9730655	3L_9730655_SNP [dm3] 3L_9737555_SNP [dm6]	C	T	2.406e^-4	0.695	INTRON CG42268
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	2.409e^-4	0.695	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11299404	3L_11299404_SNP [dm3] 3L_11306304_SNP [dm6]	T	C	2.411e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9856857	3L_9856857_SNP [dm3] 3L_9863757_SNP [dm6]	A	T	2.413e^-4	0.695	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11437787	2L_11437787_SNP [dm3] 2L_11437787_SNP [dm6]	A	T	2.414e^-4	0.695	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3339613	X_3339613_INS [dm3] X_3445580_INS [dm6]	T	TTTTT	2.420e^-4	0.695	UPSTREAM CG12535 INTRON CR44999 & 1 other
2R	9165054	2R_9165054_SNP [dm3] 2R_13277549_SNP [dm6]	G	A	2.427e^-4	0.695	NON_SYNONYMOUS_CODING Dh31-R
3R	11882758	3R_11882758_SNP [dm3] 3R_16057036_SNP [dm6]	C	A	2.431e^-4	0.695	INTRON msps
3R	25078873	3R_25078873_SNP [dm3] 3R_29253151_SNP [dm6]	C	T	2.438e^-4	0.695	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	11882771	3R_11882771_SNP [dm3] 3R_16057049_SNP [dm6]	G	C	2.443e^-4	0.695	INTRON msps
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	2.445e^-4	0.695	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18159373	3R_18159373_SNP [dm3] 3R_22333651_SNP [dm6]	T	C	2.445e^-4	0.695	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
2R	6051793	2R_6051793_SNP [dm3] 2R_10164288_SNP [dm6]	G	T	2.453e^-4	0.695	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi
3R	15016310	3R_15016310_INS [dm3] 3R_19190588_INS [dm6]	C	CTC	2.456e^-4	0.695	INTRON CG31475	TF binding site mE1_TFBS_chinmo
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	2.458e^-4	0.695	INTERGENIC
3R	8809196	3R_8809196_SNP [dm3] 3R_12983474_SNP [dm6]	G	A	2.460e^-4	0.695	INTRON Paip2	TF binding site mE1_TFBS_cad
2L	15939999	2L_15939999_SNP [dm3] 2L_15939999_SNP [dm6]	C	A	2.464e^-4	0.695	UTR_5_PRIME beat-Ib
X	6853219	X_6853219_SNP [dm3] X_6959186_SNP [dm6]	T	C	2.467e^-4	0.695	SYNONYMOUS_CODING CG32732 INTRON CG14431
2L	9532134	2L_9532134_SNP [dm3] 2L_9532134_SNP [dm6]	T	A	2.468e^-4	0.695	INTRON Oatp30B	TF binding site mE1_TFBS_sens
X	18150839	X_18150839_INS [dm3] X_18256806_INS [dm6]	G	GTGGCGG	2.468e^-4	0.695	EXON CR45613
2L	14950729	2L_14950729_SNP [dm3] 2L_14950729_SNP [dm6]	T	C	2.470e^-4	0.695	INTRON CG42313
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	2.472e^-4	0.695	INTRON CR44320
2R	17424677	2R_17424677_SNP [dm3] 2R_21537172_SNP [dm6]	A	G	2.472e^-4	0.695	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
3R	13103287	3R_13103287_SNP [dm3] 3R_17277565_SNP [dm6]	C	T	2.484e^-4	0.695	INTERGENIC
3L	4169369	3L_4169369_SNP [dm3] 3L_4169369_SNP [dm6]	G	A	2.491e^-4	0.695	UPSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	7851754	3L_7851754_SNP [dm3] 3L_7858654_SNP [dm6]	A	G	2.492e^-4	0.695	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3L	18836613	3L_18836613_SNP [dm3] 3L_18843513_SNP [dm6]	A	T	2.492e^-4	0.695	DOWNSTREAM CR32027 INTRON Indy
2R	7068863	2R_7068863_SNP [dm3] 2R_11181358_SNP [dm6]	G	A	2.496e^-4	0.695	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	2.501e^-4	0.695	INTRON CR44941
2R	9583032	2R_9583032_SNP [dm3] 2R_13695527_SNP [dm6]	C	A	2.502e^-4	0.695	INTRON fas
3L	14363475	3L_14363475_SNP [dm3] 3L_14370375_SNP [dm6]	A	G	2.505e^-4	0.695	UPSTREAM CG13481 INTERGENIC
2R	7439128	2R_7439128_SNP [dm3] 2R_11551623_SNP [dm6]	G	A	2.512e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14398542	X_14398542_SNP [dm3] X_14504509_SNP [dm6]	A	G	2.520e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8559802	3R_8559802_SNP [dm3] 3R_12734080_SNP [dm6]	C	A	2.523e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10504684	3R_10504684_SNP [dm3] 3R_14678962_SNP [dm6]	G	C	2.525e^-4	0.695	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17213941	3R_17213941_SNP [dm3] 3R_21388219_SNP [dm6]	T	A	2.527e^-4	0.695	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	16002975	2L_16002975_SNP [dm3] 2L_16002975_SNP [dm6]	G	C	2.530e^-4	0.695	DOWNSTREAM CG34167 & 2 others INTRON beat-Ic
2L	8405703	2L_8405703_SNP [dm3] 2L_8405703_SNP [dm6]	G	C	2.538e^-4	0.695	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
X	8344036	X_8344036_SNP [dm3] X_8450003_SNP [dm6]	A	C	2.539e^-4	0.695	INTRON org-1
2L	11449958	2L_11449958_SNP [dm3] 2L_11449958_SNP [dm6]	C	T	2.540e^-4	0.695	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	3911652	2R_3911652_SNP [dm3] 2R_8024147_SNP [dm6]	G	A	2.542e^-4	0.695	EXON CR45267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	16864549	2L_16864549_SNP [dm3] 2L_16864549_SNP [dm6]	G	T	2.544e^-4	0.695	INTERGENIC
2R	17967818	2R_17967818_SNP [dm3] 2R_22080313_SNP [dm6]	T	A	2.550e^-4	0.695	UPSTREAM Synj DOWNSTREAM GlcT-1 INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6583251	3R_6583251_SNP [dm3] 3R_10757529_SNP [dm6]	A	G	2.552e^-4	0.695	NON_SYNONYMOUS_CODING CG31272 EXON CR45015
X	14754932	X_14754932_SNP [dm3] X_14860899_SNP [dm6]	A	C	2.574e^-4	0.695	INTRON Flo2
3L	8674770	3L_8674770_SNP [dm3] 3L_8681670_SNP [dm6]	G	T	2.577e^-4	0.695	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2L	4910823	2L_4910823_SNP [dm3] 2L_4910823_SNP [dm6]	A	G	2.578e^-4	0.695	SYNONYMOUS_CODING hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	2.593e^-4	0.695	INTERGENIC
2R	10755270	2R_10755270_SNP [dm3] 2R_14867765_SNP [dm6]	A	T	2.598e^-4	0.695	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12348425	3L_12348425_SNP [dm3] 3L_12355325_SNP [dm6]	C	G	2.605e^-4	0.695	INTERGENIC
2L	7788965	2L_7788965_SNP [dm3] 2L_7788965_SNP [dm6]	A	T	2.605e^-4	0.695	INTRON CG7149
3R	14299706	3R_14299706_SNP [dm3] 3R_18473984_SNP [dm6]	T	G	2.606e^-4	0.695	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9956982	3R_9956982_SNP [dm3] 3R_14131260_SNP [dm6]	A	T	2.607e^-4	0.695	INTRON CG14356	TF binding site mE1_TFBS_cad
2L	10019067	2L_10019067_SNP [dm3] 2L_10019067_SNP [dm6]	T	G	2.609e^-4	0.695	INTERGENIC
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	2.610e^-4	0.695	INTRON kar	TF binding site mE1_TFBS_cad
3R	21520095	3R_21520095_DEL [dm3] 3R_25694373_DEL [dm6]	TAATACAGT	T	2.615e^-4	0.695	INTERGENIC
2L	17534548	2L_17534548_SNP [dm3] 2L_17534548_SNP [dm6]	A	T	2.616e^-4	0.695	INTERGENIC
2R	14020819	2R_14020819_DEL [dm3] 2R_18133314_DEL [dm6]	CGTTTTA	C	2.616e^-4	0.695	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	7068829	2R_7068829_SNP [dm3] 2R_11181324_SNP [dm6]	T	C	2.619e^-4	0.695	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	734350	2L_734350_SNP [dm3] 2L_734350_SNP [dm6]	T	C	2.621e^-4	0.695	INTERGENIC
3R	25094685	3R_25094685_SNP [dm3] 3R_29268963_SNP [dm6]	G	C	2.623e^-4	0.695	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6185827	3R_6185827_SNP [dm3] 3R_10360105_SNP [dm6]	G	A	2.628e^-4	0.695	SYNONYMOUS_CODING jumu	TF binding site mE1_TFBS_cad
3R	6185982	3R_6185982_SNP [dm3] 3R_10360260_SNP [dm6]	G	C	2.628e^-4	0.695	UTR_3_PRIME jumu	TF binding site mE1_TFBS_cad
2R	11829019	2R_11829019_SNP [dm3] 2R_15941514_SNP [dm6]	T	C	2.634e^-4	0.695	UPSTREAM CG8299 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8815471	3R_8815471_SNP [dm3] 3R_12989749_SNP [dm6]	G	A	2.645e^-4	0.695	SYNONYMOUS_CODING CG31342	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7068846	2R_7068846_SNP [dm3] 2R_11181341_SNP [dm6]	G	A	2.652e^-4	0.695	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8740503	3R_8740503_SNP [dm3] 3R_12914781_SNP [dm6]	G	A	2.655e^-4	0.695	INTERGENIC
3L	5883672	3L_5883672_SNP [dm3] 3L_5890572_SNP [dm6]	T	C	2.662e^-4	0.695	INTERGENIC
2L	10065602	2L_10065602_SNP [dm3] 2L_10065602_SNP [dm6]	C	T	2.665e^-4	0.695	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7755347	3R_7755347_SNP [dm3] 3R_11929625_SNP [dm6]	A	G	2.670e^-4	0.695	INTRON Cad87A
3L	6363060	3L_6363060_SNP [dm3] 3L_6369960_SNP [dm6]	G	T	2.675e^-4	0.695	DOWNSTREAM CR45419 INTERGENIC
3L	12476137	3L_12476137_SNP [dm3] 3L_12483037_SNP [dm6]	G	T	2.678e^-4	0.695	INTRON CG10663 & 1 other
2R	16395584	2R_16395584_SNP [dm3] 2R_20508079_SNP [dm6]	C	T	2.688e^-4	0.695	UPSTREAM CR44646 INTERGENIC
2L	15734502	2L_15734502_SNP [dm3] 2L_15734502_SNP [dm6]	T	C	2.689e^-4	0.695	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	12100645	2L_12100645_SNP [dm3] 2L_12100645_SNP [dm6]	G	T	2.696e^-4	0.695	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
2L	6140856	2L_6140856_SNP [dm3] 2L_6140856_SNP [dm6]	G	T	2.696e^-4	0.695	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	2.697e^-4	0.695	INTERGENIC
2L	9613726	2L_9613726_DEL [dm3] 2L_9613726_DEL [dm6]	CTTTTTGC	C	2.697e^-4	0.695	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19502410	2R_19502410_SNP [dm3] 2R_23614887_SNP [dm6]	T	A	2.697e^-4	0.695	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	5874879	3L_5874879_SNP [dm3] 3L_5881779_SNP [dm6]	C	T	2.700e^-4	0.695	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1354290	3L_1354290_SNP [dm3] 3L_1354290_SNP [dm6]	C	G	2.707e^-4	0.695	INTRON Ptp61F
2R	5976584	2R_5976584_DEL [dm3] 2R_10089079_DEL [dm6]	CACA	C	2.708e^-4	0.695	INTRON CG2269
2L	4384411	2L_4384411_SNP [dm3] 2L_4384411_SNP [dm6]	C	T	2.708e^-4	0.695	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
X	1278019	X_1278019_SNP [dm3] X_1383986_SNP [dm6]	C	G	2.711e^-4	0.695	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	5025099	2R_5025099_SNP [dm3] 2R_9137594_SNP [dm6]	G	T	2.725e^-4	0.695	SYNONYMOUS_CODING alc UPSTREAM alc & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9149445	2R_9149445_SNP [dm3] 2R_13261940_SNP [dm6]	C	A	2.728e^-4	0.695	UPSTREAM CG42319 INTRON CG42319
X	6879893	X_6879893_SNP [dm3] X_6985860_SNP [dm6]	T	A	2.729e^-4	0.695	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	7776793	X_7776793_SNP [dm3] X_7882760_SNP [dm6]	A	G	2.729e^-4	0.695	SYNONYMOUS_CODING Ir7f
3R	8808049	3R_8808049_DEL [dm3] 3R_12982327_DEL [dm6]	CGT	C	2.735e^-4	0.695	INTRON Paip2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	4244055	3R_4244055_DEL [dm3] 3R_8418333_DEL [dm6]	TCTGTTTGTTGGTAATAC...	T	2.735e^-4	0.695	INTRON CG45263
2R	19227208	2R_19227208_SNP [dm3] 2R_23339685_SNP [dm6]	T	C	2.737e^-4	0.695	INTERGENIC
2R	10103506	2R_10103506_SNP [dm3] 2R_14216001_SNP [dm6]	A	G	2.737e^-4	0.695	SYNONYMOUS_CODING RpS23 UPSTREAM mir-308	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	10065678	2L_10065678_SNP [dm3] 2L_10065678_SNP [dm6]	G	C	2.742e^-4	0.695	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8741405	3R_8741405_SNP [dm3] 3R_12915683_SNP [dm6]	A	G	2.745e^-4	0.695	UPSTREAM beat-Vb INTERGENIC
2L	9778256	2L_9778256_SNP [dm3] 2L_9778256_SNP [dm6]	C	T	2.746e^-4	0.695	INTERGENIC
X	6311167	X_6311167_SNP [dm3] X_6417134_SNP [dm6]	T	C	2.748e^-4	0.695	INTERGENIC
X	12373066	X_12373066_SNP [dm3] X_12479033_SNP [dm6]	G	A	2.751e^-4	0.695	DOWNSTREAM CG42258 INTERGENIC
2L	494066	2L_494066_SNP [dm3] 2L_494066_SNP [dm6]	C	A	2.753e^-4	0.695	INTRON ush
3L	17685402	3L_17685402_SNP [dm3] 3L_17692302_SNP [dm6]	A	T	2.760e^-4	0.695	INTRON Ccn
3R	8168439	3R_8168439_SNP [dm3] 3R_12342717_SNP [dm6]	A	T	2.762e^-4	0.695	DOWNSTREAM CG44956 INTERGENIC
3R	6373686	3R_6373686_SNP [dm3] 3R_10547964_SNP [dm6]	G	C	2.762e^-4	0.695	INTRON hth
3L	13281862	3L_13281862_SNP [dm3] 3L_13288762_SNP [dm6]	A	T	2.765e^-4	0.695	INTERGENIC
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	2.772e^-4	0.696	INTRON ssh	TF binding site mE1_TFBS_chinmo
3R	19323680	3R_19323680_INS [dm3] 3R_23497958_INS [dm6]	C	CT	2.779e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7800861	3R_7800861_SNP [dm3] 3R_11975139_SNP [dm6]	C	T	2.785e^-4	0.696	UPSTREAM Tango9 DOWNSTREAM CG10005 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10792177	2R_10792177_SNP [dm3] 2R_14904672_SNP [dm6]	A	G	2.793e^-4	0.696	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	2.793e^-4	0.696	INTERGENIC
2R	12475020	2R_12475020_SNP [dm3] 2R_16587515_SNP [dm6]	G	A	2.795e^-4	0.696	DOWNSTREAM RpLP2 INTRON CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19370225	X_19370225_SNP [dm3] X_19476192_SNP [dm6]	C	A	2.795e^-4	0.696	NON_SYNONYMOUS_CODING CG32533 DOWNSTREAM CG12200
3L	12106245	3L_12106245_SNP [dm3] 3L_12113145_SNP [dm6]	A	G	2.798e^-4	0.696	INTERGENIC
3R	11905128	3R_11905128_SNP [dm3] 3R_16079406_SNP [dm6]	C	T	2.805e^-4	0.696	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
3R	5899334	3R_5899334_SNP [dm3] 3R_10073612_SNP [dm6]	C	G	2.807e^-4	0.696	SYNONYMOUS_CODING nerfin-2 UTR_3_PRIME nerfin-2 DOWNSTREAM CG5361	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8756850	3L_8756850_INS [dm3] 3L_8763750_INS [dm6]	C	CC	2.819e^-4	0.696	INTRON Fhos
3R	22317879	3R_22317879_SNP [dm3] 3R_26492157_SNP [dm6]	G	A	2.820e^-4	0.696	INTRON plum
3R	25465510	3R_25465510_SNP [dm3] 3R_29639788_SNP [dm6]	C	T	2.821e^-4	0.696	INTRON Dop1R2
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	2.822e^-4	0.696	UPSTREAM CG10635 & 1 other INTERGENIC
X	12373177	X_12373177_SNP [dm3] X_12479144_SNP [dm6]	A	G	2.842e^-4	0.697	DOWNSTREAM CG42258 INTERGENIC
3R	25079056	3R_25079056_SNP [dm3] 3R_29253334_SNP [dm6]	G	A	2.844e^-4	0.697	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	19391382	2L_19391382_SNP [dm3] 2L_19391382_SNP [dm6]	G	T	2.844e^-4	0.697	INTRON CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5028327	2R_5028327_SNP [dm3] 2R_9140822_SNP [dm6]	G	T	2.845e^-4	0.697	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	5046805	2R_5046805_SNP [dm3] 2R_9159300_SNP [dm6]	G	A	2.849e^-4	0.697	INTRON CG8008
X	19225044	X_19225044_SNP [dm3] X_19331011_SNP [dm6]	A	T	2.855e^-4	0.697	INTRON nAChRalpha7
X	19225049	X_19225049_SNP [dm3] X_19331016_SNP [dm6]	A	T	2.855e^-4	0.697	INTRON nAChRalpha7
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	2.873e^-4	0.697	INTRON salm
3R	14503523	3R_14503523_SNP [dm3] 3R_18677801_SNP [dm6]	A	G	2.873e^-4	0.697	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
3R	8776480	3R_8776480_SNP [dm3] 3R_12950758_SNP [dm6]	T	G	2.876e^-4	0.697	INTRON grsm
2R	14884638	2R_14884638_SNP [dm3] 2R_18997133_SNP [dm6]	T	G	2.885e^-4	0.697	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad
3R	19573933	3R_19573933_SNP [dm3] 3R_23748211_SNP [dm6]	G	T	2.893e^-4	0.697	NON_SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	2.893e^-4	0.697	UPSTREAM CG10635 & 1 other INTERGENIC
2L	4648562	2L_4648562_SNP [dm3] 2L_4648562_SNP [dm6]	A	G	2.896e^-4	0.697	DOWNSTREAM CG43798 INTERGENIC
3L	1324653	3L_1324653_SNP [dm3] 3L_1324653_SNP [dm6]	A	C	2.896e^-4	0.697	UPSTREAM Myo61F & 1 other INTRON Myo61F
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	2.900e^-4	0.697	INTERGENIC
3L	9870489	3L_9870489_SNP [dm3] 3L_9877389_SNP [dm6]	G	C	2.900e^-4	0.697	DOWNSTREAM CR45406 INTERGENIC
2R	18568858	2R_18568858_SNP [dm3] 2R_22681353_SNP [dm6]	C	T	2.904e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	8796769	3R_8796769_SNP [dm3] 3R_12971047_SNP [dm6]	C	T	2.904e^-4	0.697	INTRON CG7381
3R	8806501	3R_8806501_SNP [dm3] 3R_12980779_SNP [dm6]	C	G	2.912e^-4	0.697	UPSTREAM Paip2 DOWNSTREAM CG7091 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9337605	3L_9337605_SNP [dm3] 3L_9344505_SNP [dm6]	A	C	2.918e^-4	0.697	NON_SYNONYMOUS_CODING PGRP-LC INTRON PGRP-LC
3R	19206544	3R_19206544_SNP [dm3] 3R_23380822_SNP [dm6]	T	C	2.920e^-4	0.697	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	8877058	3R_8877058_SNP [dm3] 3R_13051336_SNP [dm6]	G	A	2.922e^-4	0.697	UPSTREAM pic INTRON CG7966	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	2.924e^-4	0.697	INTERGENIC
2R	9583248	2R_9583248_SNP [dm3] 2R_13695743_SNP [dm6]	T	C	2.925e^-4	0.697	INTRON fas
2L	11471429	2L_11471429_SNP [dm3] 2L_11471429_SNP [dm6]	C	G	2.943e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11441332	2L_11441332_SNP [dm3] 2L_11441332_SNP [dm6]	T	A	2.946e^-4	0.697	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10295796	3L_10295796_SNP [dm3] 3L_10302696_SNP [dm6]	A	T	2.947e^-4	0.697	INTERGENIC
3R	8058577	3R_8058577_INS [dm3] 3R_12232855_INS [dm6]	T	TGCTT	2.949e^-4	0.697	FRAME_SHIFT Cyp313a5 UPSTREAM Pglym87
3L	11450225	3L_11450225_SNP [dm3] 3L_11457125_SNP [dm6]	T	G	2.950e^-4	0.697	UTR_3_PRIME CG12289
3L	9594415	3L_9594415_SNP [dm3] 3L_9601315_SNP [dm6]	C	A	2.954e^-4	0.697	UTR_5_PRIME CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
3L	13989273	3L_13989273_SNP [dm3] 3L_13996173_SNP [dm6]	A	G	2.960e^-4	0.697	SYNONYMOUS_CODING 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	2.963e^-4	0.697	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	5888500	3L_5888500_SNP [dm3] 3L_5895400_SNP [dm6]	C	T	2.965e^-4	0.697	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2912170	3L_2912170_SNP [dm3] 3L_2912170_SNP [dm6]	A	C	2.967e^-4	0.697	INTRON Shab
3L	10727221	3L_10727221_DEL [dm3] 3L_10734121_DEL [dm6]	CTCTA	GGT	2.969e^-4	0.697	INTERGENIC
3R	8374182	3R_8374182_SNP [dm3] 3R_12548460_SNP [dm6]	C	T	2.971e^-4	0.697	UPSTREAM Octbeta3R INTERGENIC
3R	8477900	3R_8477900_SNP [dm3] 3R_12652178_SNP [dm6]	C	A	2.974e^-4	0.697	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2R	5036759	2R_5036759_SNP [dm3] 2R_9149254_SNP [dm6]	A	G	2.975e^-4	0.697	DOWNSTREAM CG30344 INTRON CG30345
2R	7068808	2R_7068808_SNP [dm3] 2R_11181303_SNP [dm6]	A	T	2.975e^-4	0.697	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10096549	2R_10096549_SNP [dm3] 2R_14209044_SNP [dm6]	A	T	2.975e^-4	0.697	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3348360	2R_3348360_SNP [dm3] 2R_7460855_SNP [dm6]	A	C	2.989e^-4	0.699	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2R	9109752	2R_9109752_SNP [dm3] 2R_13222247_SNP [dm6]	C	T	2.996e^-4	0.699	UTR_5_PRIME Fsn UPSTREAM Dp INTRON Fsn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	10707274	2R_10707274_SNP [dm3] 2R_14819769_SNP [dm6]	A	G	2.999e^-4	0.699	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15824728	2L_15824728_SNP [dm3] 2L_15824728_SNP [dm6]	A	G	3.002e^-4	0.699	INTERGENIC
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	3.024e^-4	0.701	INTRON H2.0
X	14707899	X_14707899_SNP [dm3] X_14813866_SNP [dm6]	A	G	3.025e^-4	0.701	INTRON rut
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	3.026e^-4	0.701	INTRON TkR86C
2R	12647011	2R_12647011_SNP [dm3] 2R_16759506_SNP [dm6]	T	G	3.034e^-4	0.701	SPLICE_SITE_REGION unc-104 INTRON unc-104
2L	21964213	2L_21964213_SNP [dm3] 2L_21964213_SNP [dm6]	C	T	3.036e^-4	0.701	INTERGENIC
3L	11450251	3L_11450251_SNP [dm3] 3L_11457151_SNP [dm6]	C	T	3.041e^-4	0.701	UTR_3_PRIME CG12289
3L	7766195	3L_7766195_SNP [dm3] 3L_7773095_SNP [dm6]	A	G	3.046e^-4	0.701	INTRON Clk	regulatory region REDfly_CRMs
2R	7437246	2R_7437246_SNP [dm3] 2R_11549741_SNP [dm6]	C	G	3.051e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	2576429	3L_2576429_DEL [dm3] 3L_2576429_DEL [dm6]	AGTTAGTAAAAA...	A	3.063e^-4	0.701	INTRON msn
2L	5722491	2L_5722491_SNP [dm3] 2L_5722491_SNP [dm6]	T	A	3.066e^-4	0.701	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	3.078e^-4	0.701	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	3.082e^-4	0.701	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
2R	15318116	2R_15318116_SNP [dm3] 2R_19430611_SNP [dm6]	C	T	3.087e^-4	0.701	DOWNSTREAM Fak & 1 other INTERGENIC
2R	5471911	2R_5471911_SNP [dm3] 2R_9584406_SNP [dm6]	G	A	3.093e^-4	0.701	UPSTREAM Updo & 1 other INTRON CG1868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	12853844	2R_12853844_SNP [dm3] 2R_16966339_SNP [dm6]	T	C	3.097e^-4	0.701	INTERGENIC
3R	14863394	3R_14863394_SNP [dm3] 3R_19037672_SNP [dm6]	T	G	3.101e^-4	0.701	INTRON CG6026
3L	9526161	3L_9526161_SNP [dm3] 3L_9533061_SNP [dm6]	A	T	3.108e^-4	0.701	INTERGENIC
X	9423293	X_9423293_SNP [dm3] X_9529260_SNP [dm6]	T	A	3.110e^-4	0.701	INTRON CG32700
X	19138493	X_19138493_SNP [dm3] X_19244460_SNP [dm6]	T	C	3.114e^-4	0.701	NON_SYNONYMOUS_CODING CG7889 DOWNSTREAM CG7992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1885473	3L_1885473_SNP [dm3] 3L_1885473_SNP [dm6]	A	G	3.114e^-4	0.701	UPSTREAM Tmhs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18908276	X_18908276_SNP [dm3] X_19014243_SNP [dm6]	G	T	3.114e^-4	0.701	INTRON CG43759
3L	7452459	3L_7452459_SNP [dm3] 3L_7459359_SNP [dm6]	C	T	3.114e^-4	0.701	DOWNSTREAM ppk26 INTERGENIC
3R	11882770	3R_11882770_SNP [dm3] 3R_16057048_SNP [dm6]	T	A	3.121e^-4	0.701	INTRON msps
3R	6574923	3R_6574923_SNP [dm3] 3R_10749201_SNP [dm6]	G	T	3.129e^-4	0.701	INTRON TkR86C
X	12706039	X_12706039_SNP [dm3] X_12812006_SNP [dm6]	G	A	3.129e^-4	0.701	INTRON Pde9
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	3.134e^-4	0.701	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
3R	18982520	3R_18982520_SNP [dm3] 3R_23156798_SNP [dm6]	A	G	3.142e^-4	0.701	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6570391	3R_6570391_SNP [dm3] 3R_10744669_SNP [dm6]	T	A	3.142e^-4	0.701	INTRON TkR86C
X	20420571	X_20420571_SNP [dm3] X_20549544_SNP [dm6]	C	T	3.149e^-4	0.701	INTRON RunxB
3L	10397390	3L_10397390_SNP [dm3] 3L_10404290_SNP [dm6]	G	A	3.151e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8437459	3R_8437459_SNP [dm3] 3R_12611737_SNP [dm6]	C	T	3.151e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18211966	3R_18211966_SNP [dm3] 3R_22386244_SNP [dm6]	G	A	3.152e^-4	0.701	SYNONYMOUS_CODING CG43343 DOWNSTREAM CG5379
3R	18983447	3R_18983447_SNP [dm3] 3R_23157725_SNP [dm6]	G	A	3.153e^-4	0.701	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8807786	3R_8807786_SNP [dm3] 3R_12982064_SNP [dm6]	C	T	3.156e^-4	0.701	INTRON Paip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	3.156e^-4	0.701	INTRON CG7985
3R	13327766	3R_13327766_SNP [dm3] 3R_17502044_SNP [dm6]	C	T	3.160e^-4	0.701	INTRON Dscam3
X	6782184	X_6782184_SNP [dm3] X_6888151_SNP [dm6]	T	A	3.161e^-4	0.701	INTERGENIC
2R	3912719	2R_3912719_SNP [dm3] 2R_8025214_SNP [dm6]	C	G	3.168e^-4	0.701	EXON CR45267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	3.171e^-4	0.701	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	24989542	3R_24989542_SNP [dm3] 3R_29163820_SNP [dm6]	T	C	3.172e^-4	0.701	SYNONYMOUS_CODING CG11897
3L	4172422	3L_4172422_SNP [dm3] 3L_4172422_SNP [dm6]	C	T	3.175e^-4	0.701	SYNONYMOUS_CODING Ero1L	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11903736	3R_11903736_SNP [dm3] 3R_16078014_SNP [dm6]	A	T	3.177e^-4	0.701	DOWNSTREAM CG32855 INTRON Mhcl
2R	10744886	2R_10744886_SNP [dm3] 2R_14857381_SNP [dm6]	C	A	3.185e^-4	0.701	UTR_3_PRIME HPS1 DOWNSTREAM CG33506
2L	11430050	2L_11430050_SNP [dm3] 2L_11430050_SNP [dm6]	T	G	3.185e^-4	0.701	INTERGENIC
X	8719437	X_8719437_SNP [dm3] X_8825404_SNP [dm6]	A	T	3.186e^-4	0.701	INTERGENIC
3R	11882786	3R_11882786_SNP [dm3] 3R_16057064_SNP [dm6]	C	T	3.186e^-4	0.701	INTRON msps
X	6311179	X_6311179_SNP [dm3] X_6417146_SNP [dm6]	T	C	3.187e^-4	0.701	INTERGENIC
2R	16353348	2R_16353348_SNP [dm3] 2R_20465843_SNP [dm6]	G	A	3.192e^-4	0.701	INTRON CG12484
3R	6656056	3R_6656056_SNP [dm3] 3R_10830334_SNP [dm6]	T	C	3.195e^-4	0.701	INTRON Cad86C	TF binding site mE1_TFBS_cad
2L	2537759	2L_2537759_SNP [dm3] 2L_2537759_SNP [dm6]	A	G	3.198e^-4	0.701	INTERGENIC
3R	8784391	3R_8784391_SNP [dm3] 3R_12958669_SNP [dm6]	A	G	3.204e^-4	0.701	INTRON grsm	TF binding site mE1_TFBS_inv
3R	18167106	3R_18167106_SNP [dm3] 3R_22341384_SNP [dm6]	T	G	3.209e^-4	0.701	NON_SYNONYMOUS_CODING CG5386
2L	13842345	2L_13842345_SNP [dm3] 2L_13842345_SNP [dm6]	G	A	3.211e^-4	0.701	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	3.217e^-4	0.701	INTRON kek3
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	3.220e^-4	0.701	INTERGENIC
2R	19165115	2R_19165115_SNP [dm3] 2R_23277592_SNP [dm6]	C	T	3.225e^-4	0.701	INTERGENIC
2L	11471028	2L_11471028_SNP [dm3] 2L_11471028_SNP [dm6]	A	T	3.225e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15181225	X_15181225_SNP [dm3] X_15287192_SNP [dm6]	C	A	3.225e^-4	0.701	INTERGENIC
X	5895436	X_5895436_SNP [dm3] X_6001403_SNP [dm6]	T	G	3.234e^-4	0.701	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8815110	3R_8815110_SNP [dm3] 3R_12989388_SNP [dm6]	G	A	3.237e^-4	0.701	NON_SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
2L	11458556	2L_11458556_SNP [dm3] 2L_11458556_SNP [dm6]	A	C	3.237e^-4	0.701	INTERGENIC
2L	21711078	2L_21711078_SNP [dm3] 2L_21711078_SNP [dm6]	T	C	3.250e^-4	0.701	SPLICE_SITE_REGION CG31619 INTRON CG31619	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6514731	3R_6514731_SNP [dm3] 3R_10689009_SNP [dm6]	C	G	3.254e^-4	0.701	INTRON Skeletor
2L	9817519	2L_9817519_SNP [dm3] 2L_9817519_SNP [dm6]	G	T	3.265e^-4	0.701	INTRON nAChRalpha6
3R	18302844	3R_18302844_SNP [dm3] 3R_22477122_SNP [dm6]	T	C	3.268e^-4	0.701	INTRON Nrx-1
2L	734357	2L_734357_SNP [dm3] 2L_734357_SNP [dm6]	C	A	3.271e^-4	0.701	INTERGENIC
2R	8115961	2R_8115961_SNP [dm3] 2R_12228456_SNP [dm6]	G	T	3.273e^-4	0.701	INTRON CG8854
3R	6572924	3R_6572924_SNP [dm3] 3R_10747202_SNP [dm6]	T	A	3.279e^-4	0.701	INTRON TkR86C
2L	11441568	2L_11441568_SNP [dm3] 2L_11441568_SNP [dm6]	G	A	3.283e^-4	0.701	INTRON salm	TF binding site mE1_TFBS_inv
3R	9870351	3R_9870351_SNP [dm3] 3R_14044629_SNP [dm6]	T	A	3.286e^-4	0.701	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	12646965	2R_12646965_SNP [dm3] 2R_16759460_SNP [dm6]	C	G	3.286e^-4	0.701	INTRON unc-104
3L	7272916	3L_7272916_SNP [dm3] 3L_7279816_SNP [dm6]	G	A	3.291e^-4	0.701	INTRON unc-13-4A
2R	3063953	2R_3063953_SNP [dm3] 2R_7176448_SNP [dm6]	A	G	3.298e^-4	0.701	SYNONYMOUS_CODING CG11060 INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12474766	2R_12474766_SNP [dm3] 2R_16587261_SNP [dm6]	A	G	3.305e^-4	0.701	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
3L	3365861	3L_3365861_SNP [dm3] 3L_3365861_SNP [dm6]	A	G	3.313e^-4	0.701	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	1121429	3L_1121429_SNP [dm3] 3L_1121429_SNP [dm6]	G	A	3.313e^-4	0.701	INTERGENIC
3R	8784599	3R_8784599_SNP [dm3] 3R_12958877_SNP [dm6]	G	T	3.313e^-4	0.701	INTRON grsm	TF binding site mE1_TFBS_inv
3R	15804033	3R_15804033_SNP [dm3] 3R_19978311_SNP [dm6]	A	G	3.315e^-4	0.701	NON_SYNONYMOUS_CODING CG31213 SPLICE_SITE_REGION CG31213 INTRON Hs6st
X	14501983	X_14501983_SNP [dm3] X_14607950_SNP [dm6]	A	G	3.316e^-4	0.701	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	6387735	2R_6387735_SNP [dm3] 2R_10500230_SNP [dm6]	A	G	3.345e^-4	0.701	UTR_3_PRIME lola INTRON lola
3L	16541067	3L_16541067_SNP [dm3] 3L_16547967_SNP [dm6]	A	T	3.347e^-4	0.701	INTERGENIC
2R	9582999	2R_9582999_SNP [dm3] 2R_13695494_SNP [dm6]	A	G	3.348e^-4	0.701	INTRON fas
2L	3756618	2L_3756618_SNP [dm3] 2L_3756618_SNP [dm6]	A	T	3.349e^-4	0.701	UPSTREAM CG43707 INTERGENIC
2R	7071170	2R_7071170_SNP [dm3] 2R_11183665_SNP [dm6]	A	C	3.350e^-4	0.701	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA
X	7778959	X_7778959_SNP [dm3] X_7884926_SNP [dm6]	T	G	3.355e^-4	0.701	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
2R	14020974	2R_14020974_SNP [dm3] 2R_18133469_SNP [dm6]	G	T	3.358e^-4	0.701	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	9379087	3R_9379087_SNP [dm3] 3R_13553365_SNP [dm6]	C	A	3.359e^-4	0.701	INTERGENIC
2L	6093032	2L_6093032_SNP [dm3] 2L_6093032_SNP [dm6]	C	T	3.362e^-4	0.701	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6362541	3R_6362541_SNP [dm3] 3R_10536819_SNP [dm6]	C	T	3.364e^-4	0.701	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	3.369e^-4	0.701	INTRON CG13670	TF binding site mE1_TFBS_cad
3R	21248493	3R_21248493_SNP [dm3] 3R_25422771_SNP [dm6]	C	A	3.371e^-4	0.701	INTRON Fur1
2L	7789035	2L_7789035_SNP [dm3] 2L_7789035_SNP [dm6]	T	C	3.378e^-4	0.701	INTRON CG7149
2L	617998	2L_617998_SNP [dm3] 2L_617998_SNP [dm6]	C	T	3.389e^-4	0.701	INTERGENIC
2L	5063246	2L_5063246_SNP [dm3] 2L_5063246_SNP [dm6]	C	A	3.394e^-4	0.701	INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13826429	3R_13826429_SNP [dm3] 3R_18000707_SNP [dm6]	C	T	3.398e^-4	0.701	INTRON cpo
X	6905223	X_6905223_SNP [dm3] X_7011190_SNP [dm6]	G	A	3.406e^-4	0.701	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	3.406e^-4	0.701	INTRON ClC-a
2L	22029332	2L_22029332_SNP [dm3] 2L_22029332_SNP [dm6]	C	T	3.409e^-4	0.701	INTERGENIC
3R	3480855	3R_3480855_SNP [dm3] 3R_7655133_SNP [dm6]	T	C	3.413e^-4	0.701	INTERGENIC
3R	2492744	3R_2492744_SNP [dm3] 3R_6667022_SNP [dm6]	G	A	3.414e^-4	0.701	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8138745	2R_8138745_SNP [dm3] 2R_12251240_SNP [dm6]	G	C	3.417e^-4	0.701	INTERGENIC
3R	3471120	3R_3471120_SNP [dm3] 3R_7645398_SNP [dm6]	A	C	3.419e^-4	0.701	INTERGENIC
2R	14505099	2R_14505099_SNP [dm3] 2R_18617594_SNP [dm6]	G	T	3.424e^-4	0.701	SYNONYMOUS_CODING CG5493 UTR_3_PRIME CG5327
2L	2593809	2L_2593809_SNP [dm3] 2L_2593809_SNP [dm6]	T	C	3.425e^-4	0.701	INTERGENIC
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	3.426e^-4	0.701	DOWNSTREAM PpN58A INTRON Fili
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	3.427e^-4	0.701	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
2L	19251673	2L_19251673_SNP [dm3] 2L_19251673_SNP [dm6]	A	T	3.436e^-4	0.701	INTERGENIC
2L	15824060	2L_15824060_SNP [dm3] 2L_15824060_SNP [dm6]	C	G	3.436e^-4	0.701	INTERGENIC
2R	15318113	2R_15318113_SNP [dm3] 2R_19430608_SNP [dm6]	C	T	3.439e^-4	0.701	DOWNSTREAM Fak & 1 other INTERGENIC
3R	2312427	3R_2312427_SNP [dm3] 3R_6486705_SNP [dm6]	C	T	3.441e^-4	0.701	UPSTREAM CG15186 INTRON CG15186
2R	19502356	2R_19502356_SNP [dm3] 2R_23614833_SNP [dm6]	C	T	3.442e^-4	0.701	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	12190842	3R_12190842_SNP [dm3] 3R_16365120_SNP [dm6]	C	T	3.442e^-4	0.701	INTRON CG14880
X	15269377	X_15269377_SNP [dm3] X_15375344_SNP [dm6]	A	G	3.443e^-4	0.701	INTRON acj6
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	3.448e^-4	0.701	UPSTREAM CG3306 & 1 other INTERGENIC
2R	7068856	2R_7068856_SNP [dm3] 2R_11181351_SNP [dm6]	G	A	3.460e^-4	0.701	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5853333	3L_5853333_SNP [dm3] 3L_5860233_SNP [dm6]	C	T	3.460e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	2991712	X_2991712_SNP [dm3] X_3097679_SNP [dm6]	T	C	3.462e^-4	0.701	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6273662	3R_6273662_INS [dm3] 3R_10447940_INS [dm6]	C	CC	3.468e^-4	0.701	INTERGENIC
2L	20038764	2L_20038764_SNP [dm3] 2L_20038764_SNP [dm6]	T	G	3.477e^-4	0.701	INTRON sNPF
3R	11548447	3R_11548447_SNP [dm3] 3R_15722725_SNP [dm6]	C	G	3.483e^-4	0.701	INTERGENIC
2L	22008122	2L_22008122_SNP [dm3] 2L_22008122_SNP [dm6]	A	T	3.487e^-4	0.701	INTERGENIC
2R	5025985	2R_5025985_SNP [dm3] 2R_9138480_SNP [dm6]	G	A	3.487e^-4	0.701	UPSTREAM CG8788 & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6514764	3R_6514764_SNP [dm3] 3R_10689042_SNP [dm6]	C	A	3.491e^-4	0.701	INTRON Skeletor	TF binding site mE1_TFBS_cad
3L	17814192	3L_17814192_SNP [dm3] 3L_17821092_SNP [dm6]	C	T	3.494e^-4	0.701	UPSTREAM Ir75b INTRON Ir75c
3R	7718083	3R_7718083_SNP [dm3] 3R_11892361_SNP [dm6]	C	T	3.494e^-4	0.701	UTR_3_PRIME CG31368 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18200451	2R_18200451_SNP [dm3] 2R_22312946_SNP [dm6]	C	A	3.494e^-4	0.701	EXON CR44758
3L	17813080	3L_17813080_SNP [dm3] 3L_17819980_SNP [dm6]	G	A	3.496e^-4	0.701	NON_SYNONYMOUS_CODING Ir75b DOWNSTREAM Ir75c
2L	3017867	2L_3017867_SNP [dm3] 2L_3017867_SNP [dm6]	T	G	3.504e^-4	0.701	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
3R	6372715	3R_6372715_SNP [dm3] 3R_10546993_SNP [dm6]	A	G	3.504e^-4	0.701	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17108641	2R_17108641_SNP [dm3] 2R_21221136_SNP [dm6]	A	G	3.506e^-4	0.701	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21702239	3R_21702239_SNP [dm3] 3R_25876517_SNP [dm6]	T	G	3.506e^-4	0.701	INTRON Tsp96F	TF binding site BDTNP1_TFBS_twi
3R	13067208	3R_13067208_SNP [dm3] 3R_17241486_SNP [dm6]	A	G	3.507e^-4	0.701	INTRON beat-IIb
2L	18981247	2L_18981247_SNP [dm3] 2L_18981247_SNP [dm6]	G	A	3.509e^-4	0.701	INTRON Swip-1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	3.511e^-4	0.701	INTRON Ref2
3R	14144893	3R_14144893_SNP [dm3] 3R_18319171_SNP [dm6]	T	A	3.517e^-4	0.701	INTRON CG31235
3L	6597626	3L_6597626_SNP [dm3] 3L_6604526_SNP [dm6]	C	T	3.518e^-4	0.701	UTR_3_PRIME zpg INTRON CG8368
2R	9820087	2R_9820087_SNP [dm3] 2R_13932582_SNP [dm6]	G	A	3.521e^-4	0.701	INTRON shot
2L	5625363	2L_5625363_SNP [dm3] 2L_5625363_SNP [dm6]	C	T	3.538e^-4	0.701	DOWNSTREAM CG31646 INTERGENIC
2R	5036111	2R_5036111_SNP [dm3] 2R_9148606_SNP [dm6]	G	C	3.538e^-4	0.701	UPSTREAM CG30345 DOWNSTREAM CG30344 INTERGENIC
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	3.540e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	8804308	3R_8804308_SNP [dm3] 3R_12978586_SNP [dm6]	A	T	3.540e^-4	0.701	INTRON CG7091	TF binding site mE1_TFBS_cad
3L	9731903	3L_9731903_SNP [dm3] 3L_9738803_SNP [dm6]	T	A	3.552e^-4	0.701	INTRON CG42268
2R	7437241	2R_7437241_SNP [dm3] 2R_11549736_SNP [dm6]	T	C	3.553e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	8501477	2L_8501477_SNP [dm3] 2L_8501477_SNP [dm6]	G	C	3.553e^-4	0.701	INTRON Dh31
3R	3470701	3R_3470701_SNP [dm3] 3R_7644979_SNP [dm6]	A	T	3.554e^-4	0.701	INTERGENIC
2R	12153135	2R_12153135_SNP [dm3] 2R_16265630_SNP [dm6]	A	G	3.554e^-4	0.701	SPLICE_SITE_REGION csul INTRON csul
3L	6597733	3L_6597733_SNP [dm3] 3L_6604633_SNP [dm6]	C	T	3.558e^-4	0.701	UTR_3_PRIME zpg INTRON CG8368
3L	12344457	3L_12344457_SNP [dm3] 3L_12351357_SNP [dm6]	G	T	3.560e^-4	0.701	UTR_5_PRIME CrzR
2L	11448231	2L_11448231_SNP [dm3] 2L_11448231_SNP [dm6]	T	A	3.569e^-4	0.702	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	3.577e^-4	0.702	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11388915	2R_11388915_SNP [dm3] 2R_15501410_SNP [dm6]	A	G	3.578e^-4	0.702	SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
2R	9820048	2R_9820048_SNP [dm3] 2R_13932543_SNP [dm6]	G	A	3.583e^-4	0.702	INTRON shot
3R	3511568	3R_3511568_SNP [dm3] 3R_7685846_SNP [dm6]	G	A	3.593e^-4	0.703	INTRON Nlg1
3R	8116880	3R_8116880_SNP [dm3] 3R_12291158_SNP [dm6]	G	C	3.602e^-4	0.703	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	6098371	3L_6098371_SNP [dm3] 3L_6105271_SNP [dm6]	T	G	3.614e^-4	0.703	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	495045	2L_495045_SNP [dm3] 2L_495045_SNP [dm6]	T	A	3.624e^-4	0.703	INTRON ush
3L	15181871	3L_15181871_DEL [dm3] 3L_15188771_DEL [dm6]	TT	T	3.627e^-4	0.703	INTERGENIC
2R	7039005	2R_7039005_SNP [dm3] 2R_11151500_SNP [dm6]	A	G	3.632e^-4	0.703	INTRON CG13229
2L	17696497	2L_17696497_SNP [dm3] 2L_17696497_SNP [dm6]	C	T	3.632e^-4	0.703	INTRON CadN
3L	12704641	3L_12704641_SNP [dm3] 3L_12711541_SNP [dm6]	A	G	3.633e^-4	0.703	INTERGENIC
3R	25107982	3R_25107982_SNP [dm3] 3R_29282260_SNP [dm6]	C	T	3.634e^-4	0.703	INTERGENIC	regulatory region REDfly_CRMs
3L	13989237	3L_13989237_SNP [dm3] 3L_13996137_SNP [dm6]	T	C	3.635e^-4	0.703	SYNONYMOUS_CODING 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13283685	3R_13283685_SNP [dm3] 3R_17457963_SNP [dm6]	G	C	3.639e^-4	0.703	INTERGENIC
2L	1176899	2L_1176899_SNP [dm3] 2L_1176899_SNP [dm6]	G	A	3.642e^-4	0.703	UPSTREAM CG4896 INTRON CG4887	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19206484	3R_19206484_SNP [dm3] 3R_23380762_SNP [dm6]	G	C	3.648e^-4	0.703	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3L	7870159	3L_7870159_SNP [dm3] 3L_7877059_SNP [dm6]	C	T	3.649e^-4	0.703	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15978530	2L_15978530_SNP [dm3] 2L_15978530_SNP [dm6]	A	T	3.650e^-4	0.703	UPSTREAM CG10839 INTERGENIC
3R	7865287	3R_7865287_SNP [dm3] 3R_12039565_SNP [dm6]	A	G	3.653e^-4	0.703	UPSTREAM CG14736 INTERGENIC
3R	24603575	3R_24603575_SNP [dm3] 3R_28777853_SNP [dm6]	G	A	3.663e^-4	0.703	DOWNSTREAM CR44952 INTERGENIC
2R	12389773	2R_12389773_SNP [dm3] 2R_16502268_SNP [dm6]	C	T	3.667e^-4	0.703	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
X	6880047	X_6880047_SNP [dm3] X_6986014_SNP [dm6]	T	A	3.668e^-4	0.703	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	6879881	X_6879881_SNP [dm3] X_6985848_SNP [dm6]	A	G	3.669e^-4	0.703	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	19233333	2R_19233333_SNP [dm3] 2R_23345810_SNP [dm6]	C	G	3.669e^-4	0.703	NON_SYNONYMOUS_CODING CG3502 UPSTREAM CG9863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14299637	3R_14299637_SNP [dm3] 3R_18473915_SNP [dm6]	A	T	3.671e^-4	0.703	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	3.675e^-4	0.703	INTRON CG18769 & 1 other
2L	12673815	2L_12673815_SNP [dm3] 2L_12673815_SNP [dm6]	G	A	3.675e^-4	0.703	INTRON pdm2
3L	2405215	3L_2405215_SNP [dm3] 3L_2405215_SNP [dm6]	A	G	3.696e^-4	0.705	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16426522	2R_16426522_SNP [dm3] 2R_20539017_SNP [dm6]	C	A	3.696e^-4	0.705	SYNONYMOUS_CODING CG13427 DOWNSTREAM CG13423 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14022685	2R_14022685_SNP [dm3] 2R_18135180_SNP [dm6]	T	A	3.705e^-4	0.706	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17243547	2L_17243547_SNP [dm3] 2L_17243547_SNP [dm6]	T	A	3.718e^-4	0.708	INTRON beat-IIIc
2R	14714912	2R_14714912_SNP [dm3] 2R_18827407_SNP [dm6]	T	A	3.724e^-4	0.708	INTRON CG15097
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	3.729e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17374968	3R_17374968_SNP [dm3] 3R_21549246_SNP [dm6]	T	G	3.733e^-4	0.709	INTRON slou	TF binding site mE1_TFBS_HSA
2R	14410942	2R_14410942_SNP [dm3] 2R_18523437_SNP [dm6]	C	G	3.741e^-4	0.709	UTR_3_PRIME CG43066 INTRON CG43066
3R	11885421	3R_11885421_SNP [dm3] 3R_16059699_SNP [dm6]	C	T	3.745e^-4	0.71	DOWNSTREAM CG10185 INTRON msps
2R	3305395	2R_3305395_SNP [dm3] 2R_7417890_SNP [dm6]	C	T	3.750e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	15115482	3R_15115482_DEL [dm3] 3R_19289760_DEL [dm6]	GCT	G	3.756e^-4	0.71	DOWNSTREAM CR43451 INTERGENIC
2R	14020811	2R_14020811_SNP [dm3] 2R_18133306_SNP [dm6]	A	C	3.757e^-4	0.71	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	19575970	3R_19575970_SNP [dm3] 3R_23750248_SNP [dm6]	C	T	3.765e^-4	0.71	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
2L	1638818	2L_1638818_SNP [dm3] 2L_1638818_SNP [dm6]	T	C	3.776e^-4	0.712	INTERGENIC
3R	8760876	3R_8760876_SNP [dm3] 3R_12935154_SNP [dm6]	T	C	3.781e^-4	0.712	DOWNSTREAM beat-Vb INTERGENIC
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	3.791e^-4	0.713	INTRON salm
3R	8759499	3R_8759499_SNP [dm3] 3R_12933777_SNP [dm6]	C	A	3.792e^-4	0.713	NON_SYNONYMOUS_CODING beat-Vb
2R	8393144	2R_8393144_SNP [dm3] 2R_12505639_SNP [dm6]	A	G	3.802e^-4	0.713	UPSTREAM fdl INTRON fdl
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	3.803e^-4	0.713	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.329e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.000242

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	17.7611	0.0001

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2128 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	3.100e^-8	0.058	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.206e^-7	0.113	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	4.404e^-7	0.275	UPSTREAM hoe1 INTRON hoe1
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	2.378e^-6	0.665	INTRON hoe1
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	2.581e^-6	0.665	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2L	521349	2L_521349_INS [dm3] 2L_521349_INS [dm6]	G	GGAAG	2.790e^-6	0.665	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5100346	2L_5100346_SNP [dm3] 2L_5100346_SNP [dm6]	G	A	2.904e^-6	0.665	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	3.785e^-6	0.665	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
2L	5100464	2L_5100464_SNP [dm3] 2L_5100464_SNP [dm6]	A	T	4.302e^-6	0.665	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	5100357	2L_5100357_SNP [dm3] 2L_5100357_SNP [dm6]	T	G	4.302e^-6	0.665	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4917163	2L_4917163_SNP [dm3] 2L_4917163_SNP [dm6]	T	A	4.416e^-6	0.665	INTRON hoe1
2R	3582368	2R_3582368_SNP [dm3] 2R_7694863_SNP [dm6]	A	G	4.577e^-6	0.665	INTRON CG1399	TF binding site mE1_TFBS_inv
2L	2961475	2L_2961475_SNP [dm3] 2L_2961475_SNP [dm6]	A	G	5.052e^-6	0.665	NON_SYNONYMOUS_CODING Rbp9
2R	3582379	2R_3582379_SNP [dm3] 2R_7694874_SNP [dm6]	G	A	5.075e^-6	0.665	INTRON CG1399	TF binding site mE1_TFBS_inv
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	5.322e^-6	0.665	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	5.904e^-6	0.677	INTERGENIC
2R	3582364	2R_3582364_SNP [dm3] 2R_7694859_SNP [dm6]	A	G	6.449e^-6	0.677	INTRON CG1399	TF binding site mE1_TFBS_inv
3R	2899616	3R_2899616_SNP [dm3] 3R_7073894_SNP [dm6]	A	G	6.498e^-6	0.677	SYNONYMOUS_CODING CG1104 UPSTREAM CG1943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	5100358	2L_5100358_SNP [dm3] 2L_5100358_SNP [dm6]	A	T	7.317e^-6	0.677	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1246275	2L_1246275_SNP [dm3] 2L_1246275_SNP [dm6]	G	A	7.927e^-6	0.677	INTERGENIC
2L	2546126	2L_2546126_SNP [dm3] 2L_2546126_SNP [dm6]	G	A	8.264e^-6	0.677	INTERGENIC
3R	22275373	3R_22275373_SNP [dm3] 3R_26449651_SNP [dm6]	A	T	8.770e^-6	0.677	SYNONYMOUS_CODING Hex-t1 DOWNSTREAM tx	TF binding site mE1_TFBS_sens
2R	9967141	2R_9967141_SNP [dm3] 2R_14079636_SNP [dm6]	T	A	8.911e^-6	0.677	INTRON Prosap
2R	16146372	2R_16146372_SNP [dm3] 2R_20258867_SNP [dm6]	A	C	8.917e^-6	0.677	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5100455	2L_5100455_SNP [dm3] 2L_5100455_SNP [dm6]	G	A	9.018e^-6	0.677	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	12926674	2L_12926674_SNP [dm3] 2L_12926674_SNP [dm6]	C	G	1.192e^-5	0.813	SYNONYMOUS_CODING ACXE
2L	4903477	2L_4903477_SNP [dm3] 2L_4903477_SNP [dm6]	C	T	1.196e^-5	0.813	UTR_3_PRIME CG3036 DOWNSTREAM CG2837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	1.213e^-5	0.813	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	1999270	2L_1999270_SNP [dm3] 2L_1999270_SNP [dm6]	A	G	1.271e^-5	0.822	UPSTREAM CR43464 INTRON CG33543
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	1.378e^-5	0.845	INTERGENIC
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.422e^-5	0.845	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8796705	3R_8796705_SNP [dm3] 3R_12970983_SNP [dm6]	G	C	1.476e^-5	0.845	INTRON CG7381
2R	11765807	2R_11765807_SNP [dm3] 2R_15878302_SNP [dm6]	G	A	1.487e^-5	0.845	INTRON sli
X	12706039	X_12706039_SNP [dm3] X_12812006_SNP [dm6]	G	A	1.573e^-5	0.86	INTRON Pde9
2L	5100324	2L_5100324_SNP [dm3] 2L_5100324_SNP [dm6]	C	G	1.608e^-5	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12322154	2R_12322154_SNP [dm3] 2R_16434649_SNP [dm6]	C	T	1.695e^-5	0.86	SYNONYMOUS_CODING CG7848	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12308059	2L_12308059_SNP [dm3] 2L_12308059_SNP [dm6]	T	C	1.802e^-5	0.86	INTRON aret
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	1.843e^-5	0.86	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18453814	2R_18453814_SNP [dm3] 2R_22566309_SNP [dm6]	C	T	1.999e^-5	0.86	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14599514	2L_14599514_SNP [dm3] 2L_14599514_SNP [dm6]	T	C	2.024e^-5	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc & 1 other DOWNSTREAM osp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20769505	3R_20769505_SNP [dm3] 3R_24943783_SNP [dm6]	C	T	2.110e^-5	0.86	UTR_5_PRIME ssh INTRON ssh
2R	9967012	2R_9967012_SNP [dm3] 2R_14079507_SNP [dm6]	A	T	2.196e^-5	0.86	INTRON Prosap
3R	8799931	3R_8799931_SNP [dm3] 3R_12974209_SNP [dm6]	T	G	2.215e^-5	0.86	INTRON CG7381
2L	5100564	2L_5100564_INS [dm3] 2L_5100564_INS [dm6]	T	TC	2.293e^-5	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	16353348	2R_16353348_SNP [dm3] 2R_20465843_SNP [dm6]	G	A	2.350e^-5	0.86	INTRON CG12484
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.558e^-5	0.86	DOWNSTREAM CG18109 INTERGENIC
3L	4480014	3L_4480014_DEL [dm3] 3L_4480014_DEL [dm6]	TT	T	2.579e^-5	0.86	UPSTREAM CG7465 INTERGENIC
3R	27876257	3R_27876257_SNP [dm3] 3R_32050535_SNP [dm6]	T	A	2.621e^-5	0.86	INTRON krz
2R	17181116	2R_17181116_SNP [dm3] 2R_21293611_SNP [dm6]	C	T	2.737e^-5	0.86	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20225265	2R_20225265_SNP [dm3] 2R_24337742_SNP [dm6]	A	G	2.745e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15476412	3L_15476412_SNP [dm3] 3L_15483312_SNP [dm6]	G	A	2.839e^-5	0.86	INTERGENIC
3L	13796761	3L_13796761_SNP [dm3] 3L_13803661_SNP [dm6]	A	G	2.857e^-5	0.86	UPSTREAM bru-3 INTERGENIC
3R	22325020	3R_22325020_SNP [dm3] 3R_26499298_SNP [dm6]	A	G	2.917e^-5	0.86	INTRON plum	TF binding site BDTNP1_TFBS_twi
2L	13371657	2L_13371657_SNP [dm3] 2L_13371657_SNP [dm6]	A	G	2.987e^-5	0.86	SYNONYMOUS_CODING CG9305 UPSTREAM CG9306	TF binding site mE1_TFBS_cad
3R	25172055	3R_25172055_SNP [dm3] 3R_29346333_SNP [dm6]	A	C	3.077e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9963234	3R_9963234_SNP [dm3] 3R_14137512_SNP [dm6]	T	A	3.091e^-5	0.86	INTERGENIC
2L	9835295	2L_9835295_SNP [dm3] 2L_9835295_SNP [dm6]	T	C	3.095e^-5	0.86	INTRON nAChRalpha6
3R	8782225	3R_8782225_SNP [dm3] 3R_12956503_SNP [dm6]	A	G	3.394e^-5	0.86	INTRON grsm
2L	2986700	2L_2986700_SNP [dm3] 2L_2986700_SNP [dm6]	G	C	3.449e^-5	0.86	INTRON Chd1	TF binding site BDTNP1_TFBS_dl
3R	14327761	3R_14327761_SNP [dm3] 3R_18502039_SNP [dm6]	A	G	3.476e^-5	0.86	INTRON fru
2L	2012244	2L_2012244_SNP [dm3] 2L_2012244_SNP [dm6]	C	T	3.485e^-5	0.86	DOWNSTREAM tRNA:CR31669 INTRON CG4238
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	3.521e^-5	0.86	INTRON ssh	TF binding site mE1_TFBS_chinmo
2L	2986649	2L_2986649_SNP [dm3] 2L_2986649_SNP [dm6]	G	A	3.537e^-5	0.86	INTRON Chd1	TF binding site BDTNP1_TFBS_dl
2R	5562944	2R_5562944_SNP [dm3] 2R_9675439_SNP [dm6]	A	G	3.616e^-5	0.86	INTRON Mmp2	TF binding site mE1_TFBS_inv
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	3.633e^-5	0.86	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
2L	12308065	2L_12308065_SNP [dm3] 2L_12308065_SNP [dm6]	G	T	3.729e^-5	0.86	INTRON aret
3R	8799924	3R_8799924_SNP [dm3] 3R_12974202_SNP [dm6]	G	T	3.762e^-5	0.86	INTRON CG7381
2R	16353362	2R_16353362_SNP [dm3] 2R_20465857_SNP [dm6]	G	A	3.794e^-5	0.86	INTRON CG12484
2L	2168789	2L_2168789_SNP [dm3] 2L_2168789_SNP [dm6]	T	G	3.797e^-5	0.86	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16803137	X_16803137_SNP [dm3] X_16909104_SNP [dm6]	T	C	3.889e^-5	0.86	INTRON CR44754
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	3.960e^-5	0.86	INTRON CG13670	TF binding site mE1_TFBS_cad
2R	8388065	2R_8388065_SNP [dm3] 2R_12500560_SNP [dm6]	C	T	4.015e^-5	0.86	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11117957	3L_11117957_SNP [dm3] 3L_11124857_SNP [dm6]	C	A	4.043e^-5	0.86	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6400373	2L_6400373_SNP [dm3] 2L_6400373_SNP [dm6]	G	A	4.095e^-5	0.86	INTRON CG42368
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	4.112e^-5	0.86	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1999139	2L_1999139_SNP [dm3] 2L_1999139_SNP [dm6]	C	G	4.129e^-5	0.86	UPSTREAM CR43464 INTRON CG33543
3R	19675249	3R_19675249_SNP [dm3] 3R_23849527_SNP [dm6]	A	C	4.135e^-5	0.86	UTR_3_PRIME CG34355
3L	11118281	3L_11118281_SNP [dm3] 3L_11125181_SNP [dm6]	C	A	4.136e^-5	0.86	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1752484	2L_1752484_SNP [dm3] 2L_1752484_SNP [dm6]	G	C	4.165e^-5	0.86	SYNONYMOUS_CODING CG17648 UPSTREAM CG17712	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	4.375e^-5	0.86	INTRON grsm
3R	20769587	3R_20769587_INS [dm3] 3R_24943865_INS [dm6]	T	TGTT	4.390e^-5	0.86	UTR_5_PRIME ssh INTRON ssh	TF binding site BDTNP1_TFBS_dl
3L	11117223	3L_11117223_SNP [dm3] 3L_11124123_SNP [dm6]	G	A	4.446e^-5	0.86	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6490368	2L_6490368_SNP [dm3] 2L_6490368_SNP [dm6]	G	A	4.486e^-5	0.86	SYNONYMOUS_CODING CG9548 UPSTREAM CG31638 DOWNSTREAM epsilonCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4401485	2R_4401485_SNP [dm3] 2R_8513980_SNP [dm6]	G	A	4.563e^-5	0.86	INTRON mtt
2L	9930083	2L_9930083_SNP [dm3] 2L_9930083_SNP [dm6]	C	A	4.643e^-5	0.86	UTR_3_PRIME CG42366 UPSTREAM CG42367 INTRON CG42366	TF binding site mE1_TFBS_HSA
2L	22672024	2L_22672024_DEL [dm3] 2L_22779292_DEL [dm6]	AA	A	4.668e^-5	0.86	INTERGENIC
3R	9567301	3R_9567301_SNP [dm3] 3R_13741579_SNP [dm6]	T	C	4.677e^-5	0.86	INTRON CG34383
3L	5275294	3L_5275294_SNP [dm3] 3L_5282194_SNP [dm6]	G	C	4.793e^-5	0.86	INTERGENIC
3L	8568158	3L_8568158_SNP [dm3] 3L_8575058_SNP [dm6]	C	T	4.844e^-5	0.86	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8568188	3L_8568188_SNP [dm3] 3L_8575088_SNP [dm6]	C	T	4.844e^-5	0.86	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	4.952e^-5	0.86	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8568151	3L_8568151_SNP [dm3] 3L_8575051_SNP [dm6]	G	A	4.977e^-5	0.86	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22324827	3R_22324827_SNP [dm3] 3R_26499105_SNP [dm6]	A	T	4.980e^-5	0.86	INTRON plum	TF binding site BDTNP1_TFBS_twi
2R	19479734	2R_19479734_SNP [dm3] 2R_23592211_SNP [dm6]	G	T	5.069e^-5	0.86	INTRON apt
3L	8315156	3L_8315156_SNP [dm3] 3L_8322056_SNP [dm6]	C	T	5.069e^-5	0.86	SYNONYMOUS_CODING CG13670
2L	1999134	2L_1999134_SNP [dm3] 2L_1999134_SNP [dm6]	C	T	5.078e^-5	0.86	UPSTREAM CR43464 INTRON CG33543
X	18504208	X_18504208_SNP [dm3] X_18610175_SNP [dm6]	T	G	5.092e^-5	0.86	NON_SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
3R	5651260	3R_5651260_SNP [dm3] 3R_9825538_SNP [dm6]	A	T	5.106e^-5	0.86	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14589556	2R_14589556_SNP [dm3] 2R_18702051_SNP [dm6]	T	C	5.120e^-5	0.86	SYNONYMOUS_CODING Sik3 DOWNSTREAM Sik3 INTRON Sik3
3R	26101328	3R_26101328_SNP [dm3] 3R_30275606_SNP [dm6]	C	T	5.160e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	12873539	X_12873539_SNP [dm3] X_12979506_SNP [dm6]	G	T	5.272e^-5	0.86	INTERGENIC
2R	13782573	2R_13782573_SNP [dm3] 2R_17895068_SNP [dm6]	C	A	5.329e^-5	0.86	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	18372932	2R_18372932_SNP [dm3] 2R_22485427_SNP [dm6]	A	G	5.377e^-5	0.86	SYNONYMOUS_CODING CG4554
2L	7849315	2L_7849315_SNP [dm3] 2L_7849315_SNP [dm6]	C	A	5.472e^-5	0.86	SYNONYMOUS_CODING CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22514170	3R_22514170_SNP [dm3] 3R_26688448_SNP [dm6]	G	A	5.481e^-5	0.86	INTERGENIC
2R	3041181	2R_3041181_SNP [dm3] 2R_7153676_SNP [dm6]	T	C	5.531e^-5	0.86	UPSTREAM Spn43Ab DOWNSTREAM Spn43Ad INTRON pk
3R	8237112	3R_8237112_SNP [dm3] 3R_12411390_SNP [dm6]	C	A	5.581e^-5	0.86	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5724248	X_5724248_SNP [dm3] X_5830215_SNP [dm6]	C	T	5.584e^-5	0.86	INTRON CG15765
3L	17771660	3L_17771660_SNP [dm3] 3L_17778560_SNP [dm6]	T	A	5.590e^-5	0.86	INTERGENIC
3R	19675244	3R_19675244_SNP [dm3] 3R_23849522_SNP [dm6]	T	A	5.702e^-5	0.86	UTR_3_PRIME CG34355
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	5.763e^-5	0.86	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	5.800e^-5	0.86	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8210917	3R_8210917_SNP [dm3] 3R_12385195_SNP [dm6]	T	G	5.803e^-5	0.86	INTRON GstD11
2L	22209574	2L_22209574_SNP [dm3] 2L_22209574_SNP [dm6]	G	T	5.868e^-5	0.86	INTRON Ir40a	transposable element FlyBase
2L	5100478	2L_5100478_SNP [dm3] 2L_5100478_SNP [dm6]	T	A	5.937e^-5	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	8300365	3L_8300365_SNP [dm3] 3L_8307265_SNP [dm6]	C	A	5.947e^-5	0.86	UTR_3_PRIME BI-1 UPSTREAM Gr66a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	5.991e^-5	0.86	INTRON ush	regulatory region REDfly_CRMs
3R	18622087	3R_18622087_SNP [dm3] 3R_22796365_SNP [dm6]	C	T	6.016e^-5	0.86	INTERGENIC
2R	4072558	2R_4072558_SNP [dm3] 2R_8185053_SNP [dm6]	G	T	6.025e^-5	0.86	INTRON LRP1
2R	14505099	2R_14505099_SNP [dm3] 2R_18617594_SNP [dm6]	G	T	6.042e^-5	0.86	SYNONYMOUS_CODING CG5493 UTR_3_PRIME CG5327
2L	7531268	2L_7531268_SNP [dm3] 2L_7531268_SNP [dm6]	A	T	6.106e^-5	0.86	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16353380	2R_16353380_SNP [dm3] 2R_20465875_SNP [dm6]	C	A	6.117e^-5	0.86	INTRON CG12484
2R	13882247	2R_13882247_INS [dm3] 2R_17994742_INS [dm6]	A	ACTCGCCATCCTCGAGCG...	6.155e^-5	0.86	INTRON dpr13
2R	3063953	2R_3063953_SNP [dm3] 2R_7176448_SNP [dm6]	A	G	6.164e^-5	0.86	SYNONYMOUS_CODING CG11060 INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12857123	2R_12857123_SNP [dm3] 2R_16969618_SNP [dm6]	T	A	6.235e^-5	0.86	EXON CR44377
3L	9983555	3L_9983555_SNP [dm3] 3L_9990455_SNP [dm6]	G	C	6.343e^-5	0.86	INTRON dpr6
3R	8071890	3R_8071890_SNP [dm3] 3R_12246168_SNP [dm6]	C	T	6.416e^-5	0.86	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14599008	2L_14599008_SNP [dm3] 2L_14599008_SNP [dm6]	C	T	6.444e^-5	0.86	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17167213	2R_17167213_SNP [dm3] 2R_21279708_SNP [dm6]	T	C	6.447e^-5	0.86	INTRON Rgk3
2L	7849336	2L_7849336_SNP [dm3] 2L_7849336_SNP [dm6]	G	A	6.631e^-5	0.86	SYNONYMOUS_CODING CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	16787695	X_16787695_SNP [dm3] X_16893662_SNP [dm6]	T	G	6.631e^-5	0.86	INTERGENIC
3R	9617180	3R_9617180_SNP [dm3] 3R_13791458_SNP [dm6]	T	C	6.675e^-5	0.86	INTERGENIC
X	16799197	X_16799197_SNP [dm3] X_16905164_SNP [dm6]	G	T	6.680e^-5	0.86	EXON CR44754
2R	15716284	2R_15716284_SNP [dm3] 2R_19828779_SNP [dm6]	T	C	6.853e^-5	0.86	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15986727	2L_15986727_SNP [dm3] 2L_15986727_SNP [dm6]	C	G	6.855e^-5	0.86	INTERGENIC
3R	22261705	3R_22261705_SNP [dm3] 3R_26435983_SNP [dm6]	G	A	6.856e^-5	0.86	INTERGENIC
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	6.873e^-5	0.86	UTR_3_PRIME bol
2R	17240308	2R_17240308_SNP [dm3] 2R_21352803_SNP [dm6]	T	C	6.904e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5617182	3L_5617182_SNP [dm3] 3L_5624082_SNP [dm6]	C	T	6.925e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10459205	3L_10459205_MNP [dm3] 3L_10466105_MNP [dm6]	GTT	AGC	7.030e^-5	0.86	UPSTREAM S-Lap3 INTRON S-Lap3
2R	13049284	2R_13049284_SNP [dm3] 2R_17161779_SNP [dm6]	A	T	7.133e^-5	0.86	UPSTREAM CG30457 INTERGENIC
2R	12031320	2R_12031320_SNP [dm3] 2R_16143815_SNP [dm6]	A	C	7.137e^-5	0.86	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6401145	2L_6401145_SNP [dm3] 2L_6401145_SNP [dm6]	G	A	7.162e^-5	0.86	INTRON CG42368
2L	6025547	2L_6025547_SNP [dm3] 2L_6025547_SNP [dm6]	T	C	7.178e^-5	0.86	DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_inv
2L	1999127	2L_1999127_SNP [dm3] 2L_1999127_SNP [dm6]	G	C	7.365e^-5	0.86	UPSTREAM CR43464 INTRON CG33543
2R	9756735	2R_9756735_SNP [dm3] 2R_13869230_SNP [dm6]	G	A	7.421e^-5	0.86	INTRON shot
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	7.479e^-5	0.86	UPSTREAM CG17292 INTRON CG17292
2L	1999129	2L_1999129_SNP [dm3] 2L_1999129_SNP [dm6]	A	G	7.497e^-5	0.86	UPSTREAM CR43464 INTRON CG33543
2L	13371389	2L_13371389_SNP [dm3] 2L_13371389_SNP [dm6]	A	T	7.508e^-5	0.86	UPSTREAM CG9306 DOWNSTREAM CG9305 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7928714	3R_7928714_SNP [dm3] 3R_12102992_SNP [dm6]	C	T	7.538e^-5	0.86	INTRON dpr17
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	7.611e^-5	0.86	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19269281	2L_19269281_SNP [dm3] 2L_19269281_SNP [dm6]	G	A	7.651e^-5	0.86	EXON CR44190
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	7.754e^-5	0.86	INTERGENIC
3R	8209435	3R_8209435_SNP [dm3] 3R_12383713_SNP [dm6]	T	G	7.815e^-5	0.86	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	521504	2L_521504_SNP [dm3] 2L_521504_SNP [dm6]	A	G	7.880e^-5	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3362324	2R_3362324_SNP [dm3] 2R_7474819_SNP [dm6]	C	T	7.923e^-5	0.86	UPSTREAM Aldh-III INTRON Aldh-III	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
2R	17895468	2R_17895468_SNP [dm3] 2R_22007963_SNP [dm6]	C	A	7.937e^-5	0.86	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8630000	3L_8630000_SNP [dm3] 3L_8636900_SNP [dm6]	C	T	8.031e^-5	0.86	DOWNSTREAM Zasp66 INTRON Zasp66
3L	13825101	3L_13825101_SNP [dm3] 3L_13832001_SNP [dm6]	A	G	8.056e^-5	0.86	INTERGENIC
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	8.057e^-5	0.86	UPSTREAM CG10635 & 1 other INTERGENIC
2L	9532134	2L_9532134_SNP [dm3] 2L_9532134_SNP [dm6]	T	A	8.216e^-5	0.86	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3R	23614315	3R_23614315_SNP [dm3] 3R_27788593_SNP [dm6]	G	A	8.227e^-5	0.86	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	16165230	2R_16165230_SNP [dm3] 2R_20277725_SNP [dm6]	A	G	8.281e^-5	0.86	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9197857	X_9197857_SNP [dm3] X_9303824_SNP [dm6]	C	T	8.420e^-5	0.86	DOWNSTREAM lz INTERGENIC
3L	13329152	3L_13329152_SNP [dm3] 3L_13336052_SNP [dm6]	G	T	8.454e^-5	0.86	INTERGENIC
3R	21355743	3R_21355743_SNP [dm3] 3R_25530021_SNP [dm6]	C	T	8.534e^-5	0.86	INTRON msi
2R	8395126	2R_8395126_SNP [dm3] 2R_12507621_SNP [dm6]	T	G	8.552e^-5	0.86	UPSTREAM fdl DOWNSTREAM vis INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	22596883	2L_22596883_SNP [dm3] 2L_22704151_SNP [dm6]	T	A	8.593e^-5	0.86	INTRON CG40006
2L	6401293	2L_6401293_SNP [dm3] 2L_6401293_SNP [dm6]	A	T	8.597e^-5	0.86	INTRON CG42368
2L	14599482	2L_14599482_SNP [dm3] 2L_14599482_SNP [dm6]	A	G	8.615e^-5	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc & 1 other DOWNSTREAM osp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22621861	2L_22621861_SNP [dm3] 2L_22729129_SNP [dm6]	C	T	8.655e^-5	0.86	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21060471	3L_21060471_SNP [dm3] 3L_21067371_SNP [dm6]	C	A	8.655e^-5	0.86	UPSTREAM siz INTRON siz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	4553542	X_4553542_SNP [dm3] X_4659509_SNP [dm6]	C	T	8.805e^-5	0.86	SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	8365132	3R_8365132_SNP [dm3] 3R_12539410_SNP [dm6]	C	T	8.851e^-5	0.86	INTRON Octbeta3R
X	16785483	X_16785483_SNP [dm3] X_16891450_SNP [dm6]	G	A	9.061e^-5	0.86	DOWNSTREAM CG13002 INTERGENIC
2L	4875855	2L_4875855_SNP [dm3] 2L_4875855_SNP [dm6]	C	T	9.109e^-5	0.86	UTR_3_PRIME pog DOWNSTREAM pog
3L	13796804	3L_13796804_DEL [dm3] 3L_13803704_DEL [dm6]	AA	A	9.256e^-5	0.86	UPSTREAM bru-3 INTERGENIC
2L	1752487	2L_1752487_SNP [dm3] 2L_1752487_SNP [dm6]	C	A	9.302e^-5	0.86	SYNONYMOUS_CODING CG17648 UPSTREAM CG17712	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	8532451	2L_8532451_SNP [dm3] 2L_8532451_SNP [dm6]	G	A	9.348e^-5	0.86	INTRON CG17834
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	9.355e^-5	0.86	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	10400550	2L_10400550_SNP [dm3] 2L_10400550_SNP [dm6]	A	G	9.385e^-5	0.86	NON_SYNONYMOUS_CODING Cnot4
3L	9278867	3L_9278867_SNP [dm3] 3L_9285767_SNP [dm6]	G	T	9.453e^-5	0.86	UTR_3_PRIME GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	9.544e^-5	0.86	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	25257931	3R_25257931_SNP [dm3] 3R_29432209_SNP [dm6]	G	T	9.559e^-5	0.86	INTRON Ptp99A
2L	14599393	2L_14599393_SNP [dm3] 2L_14599393_SNP [dm6]	C	T	9.579e^-5	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15101254	3R_15101254_SNP [dm3] 3R_19275532_SNP [dm6]	T	C	9.591e^-5	0.86	INTERGENIC
3R	27457391	3R_27457391_DEL [dm3] 3R_31631669_DEL [dm6]	TT	T	9.678e^-5	0.86	INTRON kek6
3L	10177305	3L_10177305_SNP [dm3] 3L_10184205_SNP [dm6]	A	G	9.874e^-5	0.86	INTRON dpr10
2L	22595141	2L_22595141_SNP [dm3] 2L_22702409_SNP [dm6]	A	G	9.956e^-5	0.86	INTRON CG40006
2L	1999159	2L_1999159_SNP [dm3] 2L_1999159_SNP [dm6]	A	G	9.980e^-5	0.86	UPSTREAM CR43464 INTRON CG33543
X	9197844	X_9197844_DEL [dm3] X_9303811_DEL [dm6]	AAT	A	9.990e^-5	0.86	DOWNSTREAM lz INTERGENIC
2L	8372098	2L_8372098_SNP [dm3] 2L_8372098_SNP [dm6]	G	A	1.003e^-4	0.86	UPSTREAM CG17292 INTRON CG17292
X	16786593	X_16786593_SNP [dm3] X_16892560_SNP [dm6]	G	T	1.010e^-4	0.86	INTERGENIC
3L	9989668	3L_9989668_SNP [dm3] 3L_9996568_SNP [dm6]	A	G	1.018e^-4	0.86	INTRON dpr6
2L	7155311	2L_7155311_SNP [dm3] 2L_7155311_SNP [dm6]	G	A	1.023e^-4	0.86	INTRON Pvf3	TF binding site mE1_TFBS_sens
2L	4904688	2L_4904688_SNP [dm3] 2L_4904688_SNP [dm6]	G	A	1.027e^-4	0.86	SYNONYMOUS_CODING CG2837 DOWNSTREAM CG3036	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26452747	3R_26452747_SNP [dm3] 3R_30627025_SNP [dm6]	A	G	1.038e^-4	0.86	DOWNSTREAM CG2267 INTERGENIC
2L	22691394	2L_22691394_SNP [dm3] 2L_22798662_SNP [dm6]	G	A	1.039e^-4	0.86	UPSTREAM CG40439 INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	12687296	3L_12687296_SNP [dm3] 3L_12694196_SNP [dm6]	T	G	1.045e^-4	0.86	UTR_5_PRIME mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	5234786	2R_5234786_SNP [dm3] 2R_9347281_SNP [dm6]	G	C	1.047e^-4	0.86	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
2R	9770824	2R_9770824_SNP [dm3] 2R_13883319_SNP [dm6]	T	C	1.059e^-4	0.86	INTRON shot
3L	5491775	3L_5491775_SNP [dm3] 3L_5498675_SNP [dm6]	G	A	1.059e^-4	0.86	UPSTREAM CR44518 INTRON blanks	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	7888745	3R_7888745_SNP [dm3] 3R_12063023_SNP [dm6]	T	A	1.065e^-4	0.86	UPSTREAM CG14740 INTERGENIC
2L	13031124	2L_13031124_SNP [dm3] 2L_13031124_SNP [dm6]	C	T	1.069e^-4	0.86	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	22617684	2L_22617684_SNP [dm3] 2L_22724952_SNP [dm6]	T	C	1.073e^-4	0.86	INTRON CG40006
2L	22630715	2L_22630715_SNP [dm3] 2L_22737983_SNP [dm6]	C	G	1.078e^-4	0.86	INTRON CG40006
3R	23614154	3R_23614154_SNP [dm3] 3R_27788432_SNP [dm6]	C	A	1.080e^-4	0.86	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	22627816	2L_22627816_SNP [dm3] 2L_22735084_SNP [dm6]	T	C	1.080e^-4	0.86	INTRON CG40006
3R	8782135	3R_8782135_SNP [dm3] 3R_12956413_SNP [dm6]	T	A	1.093e^-4	0.86	INTRON grsm
2R	6539422	2R_6539422_SNP [dm3] 2R_10651917_SNP [dm6]	A	C	1.113e^-4	0.86	INTERGENIC
3R	8008369	3R_8008369_SNP [dm3] 3R_12182647_SNP [dm6]	C	T	1.120e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9523846	3L_9523846_SNP [dm3] 3L_9530746_SNP [dm6]	A	C	1.121e^-4	0.86	INTRON Or67a
2L	13461027	2L_13461027_SNP [dm3] 2L_13461027_SNP [dm6]	A	G	1.122e^-4	0.86	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784
2R	12692664	2R_12692664_SNP [dm3] 2R_16805159_SNP [dm6]	T	C	1.125e^-4	0.86	INTERGENIC
3R	25143237	3R_25143237_SNP [dm3] 3R_29317515_SNP [dm6]	A	T	1.127e^-4	0.86	SPLICE_SITE_REGION Cnx99A INTRON Cnx99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19143357	2R_19143357_SNP [dm3] 2R_23255834_SNP [dm6]	T	G	1.139e^-4	0.86	INTERGENIC
2L	521495	2L_521495_SNP [dm3] 2L_521495_SNP [dm6]	G	A	1.147e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25720510	3R_25720510_SNP [dm3] 3R_29894788_SNP [dm6]	G	A	1.149e^-4	0.86	UPSTREAM CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
2R	3028996	2R_3028996_SNP [dm3] 2R_7141491_SNP [dm6]	T	A	1.153e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26115687	3R_26115687_SNP [dm3] 3R_30289965_SNP [dm6]	C	G	1.170e^-4	0.86	INTRON hdc
3L	5361956	3L_5361956_SNP [dm3] 3L_5368856_SNP [dm6]	C	A	1.174e^-4	0.86	UPSTREAM CG10635 & 1 other INTERGENIC
2R	9356794	2R_9356794_SNP [dm3] 2R_13469289_SNP [dm6]	A	C	1.183e^-4	0.86	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	8128028	3R_8128028_SNP [dm3] 3R_12302306_SNP [dm6]	T	C	1.189e^-4	0.86	UTR_3_PRIME svp
3L	1358011	3L_1358011_SNP [dm3] 3L_1358011_SNP [dm6]	T	C	1.190e^-4	0.86	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	18473886	3L_18473886_SNP [dm3] 3L_18480786_SNP [dm6]	A	C	1.203e^-4	0.86	INTERGENIC
2L	6111427	2L_6111427_SNP [dm3] 2L_6111427_SNP [dm6]	A	T	1.204e^-4	0.86	INTRON stai
2L	6111429	2L_6111429_SNP [dm3] 2L_6111429_SNP [dm6]	A	T	1.204e^-4	0.86	INTRON stai
2R	11422675	2R_11422675_SNP [dm3] 2R_15535170_SNP [dm6]	G	C	1.231e^-4	0.86	SPLICE_SITE_REGION CG30471 UTR_5_PRIME CG30471
2R	17671201	2R_17671201_SNP [dm3] 2R_21783696_SNP [dm6]	T	A	1.232e^-4	0.86	INTERGENIC
2R	3407805	2R_3407805_SNP [dm3] 2R_7520300_SNP [dm6]	C	A	1.232e^-4	0.86	NON_SYNONYMOUS_CODING CG2144
2L	15944145	2L_15944145_SNP [dm3] 2L_15944145_SNP [dm6]	C	T	1.258e^-4	0.86	INTRON beat-Ib
X	7915972	X_7915972_SNP [dm3] X_8021939_SNP [dm6]	C	T	1.259e^-4	0.86	UPSTREAM CG15333 INTRON Tbh
2L	1999131	2L_1999131_SNP [dm3] 2L_1999131_SNP [dm6]	T	A	1.265e^-4	0.86	UPSTREAM CR43464 INTRON CG33543
2L	521444	2L_521444_SNP [dm3] 2L_521444_SNP [dm6]	T	C	1.266e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13796932	3L_13796932_SNP [dm3] 3L_13803832_SNP [dm6]	T	A	1.267e^-4	0.86	UPSTREAM bru-3 INTERGENIC
3R	13508131	3R_13508131_DEL [dm3] 3R_17682409_DEL [dm6]	TGTTAAACTTTT...	T	1.268e^-4	0.86	UTR_5_PRIME alt UPSTREAM CG7655 & 1 other INTRON alt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13481529	X_13481529_SNP [dm3] X_13587496_SNP [dm6]	T	C	1.269e^-4	0.86	INTRON Tango13
2L	7146957	2L_7146957_SNP [dm3] 2L_7146957_SNP [dm6]	C	A	1.272e^-4	0.86	INTRON Pvf3
2L	12987461	2L_12987461_SNP [dm3] 2L_12987461_SNP [dm6]	A	C	1.288e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9616889	3R_9616889_SNP [dm3] 3R_13791167_SNP [dm6]	T	A	1.288e^-4	0.86	INTERGENIC
3R	26219322	3R_26219322_SNP [dm3] 3R_30393600_SNP [dm6]	T	C	1.300e^-4	0.86	INTERGENIC
2L	5100555	2L_5100555_SNP [dm3] 2L_5100555_SNP [dm6]	C	A	1.305e^-4	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	9485708	2L_9485708_DEL [dm3] 2L_9485708_DEL [dm6]	GAC	G	1.308e^-4	0.86	INTERGENIC
2L	6401111	2L_6401111_SNP [dm3] 2L_6401111_SNP [dm6]	T	C	1.311e^-4	0.86	INTRON CG42368
2R	9966987	2R_9966987_SNP [dm3] 2R_14079482_SNP [dm6]	A	T	1.313e^-4	0.86	INTRON Prosap
2L	8372639	2L_8372639_SNP [dm3] 2L_8372639_SNP [dm6]	C	T	1.313e^-4	0.86	INTRON CG17292
2R	12000258	2R_12000258_SNP [dm3] 2R_16112753_SNP [dm6]	T	C	1.314e^-4	0.86	INTRON Asph
3L	15435683	3L_15435683_SNP [dm3] 3L_15442583_SNP [dm6]	A	C	1.314e^-4	0.86	INTERGENIC
2R	18565380	2R_18565380_SNP [dm3] 2R_22677875_SNP [dm6]	T	A	1.329e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13998984	2L_13998984_SNP [dm3] 2L_13998984_SNP [dm6]	T	C	1.330e^-4	0.86	INTRON rk
3R	15151190	3R_15151190_SNP [dm3] 3R_19325468_SNP [dm6]	G	C	1.335e^-4	0.86	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3345019	2R_3345019_SNP [dm3] 2R_7457514_SNP [dm6]	T	G	1.338e^-4	0.86	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	1.342e^-4	0.86	INTRON grsm
2R	9966410	2R_9966410_SNP [dm3] 2R_14078905_SNP [dm6]	A	G	1.342e^-4	0.86	INTRON Prosap
2L	7386538	2L_7386538_SNP [dm3] 2L_7386538_SNP [dm6]	A	G	1.343e^-4	0.86	SYNONYMOUS_CODING CG5149	TF binding site BDTNP1_TFBS_twi
2R	18211780	2R_18211780_SNP [dm3] 2R_22324275_SNP [dm6]	C	T	1.356e^-4	0.86	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3796226	3L_3796226_SNP [dm3] 3L_3796226_SNP [dm6]	T	A	1.357e^-4	0.86	INTRON CG32264
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	1.358e^-4	0.86	INTRON grsm
3R	19691455	3R_19691455_SNP [dm3] 3R_23865733_SNP [dm6]	C	T	1.359e^-4	0.86	INTRON Pli	TF binding site BDTNP1_TFBS_dl
3R	22258496	3R_22258496_SNP [dm3] 3R_26432774_SNP [dm6]	T	C	1.360e^-4	0.86	INTERGENIC
3R	21355745	3R_21355745_SNP [dm3] 3R_25530023_SNP [dm6]	T	C	1.366e^-4	0.86	INTRON msi
2L	19636271	2L_19636271_INS [dm3] 2L_19636271_INS [dm6]	A	AAGTTCGC	1.371e^-4	0.86	INTRON Lar
2R	9967101	2R_9967101_SNP [dm3] 2R_14079596_SNP [dm6]	C	A	1.374e^-4	0.86	INTRON Prosap
2R	17024763	2R_17024763_SNP [dm3] 2R_21137258_SNP [dm6]	T	A	1.375e^-4	0.86	INTRON Magi
2L	521484	2L_521484_INS [dm3] 2L_521484_INS [dm6]	T	TG	1.376e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521499	2L_521499_SNP [dm3] 2L_521499_SNP [dm6]	A	C	1.376e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15716437	2R_15716437_SNP [dm3] 2R_19828932_SNP [dm6]	A	G	1.376e^-4	0.86	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11062890	3L_11062890_SNP [dm3] 3L_11069790_SNP [dm6]	T	C	1.397e^-4	0.86	NON_SYNONYMOUS_CODING CG6310 UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other
3R	9818579	3R_9818579_SNP [dm3] 3R_13992857_SNP [dm6]	T	C	1.405e^-4	0.86	INTRON rdx
2R	3027302	2R_3027302_SNP [dm3] 2R_7139797_SNP [dm6]	T	G	1.408e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4903899	2L_4903899_SNP [dm3] 2L_4903899_SNP [dm6]	G	C	1.417e^-4	0.86	UTR_3_PRIME CG2837 DOWNSTREAM CG2837 & 1 other
3R	12933316	3R_12933316_SNP [dm3] 3R_17107594_SNP [dm6]	G	A	1.418e^-4	0.86	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9616890	3R_9616890_SNP [dm3] 3R_13791168_SNP [dm6]	C	T	1.421e^-4	0.86	INTERGENIC
2L	14598990	2L_14598990_SNP [dm3] 2L_14598990_SNP [dm6]	A	G	1.424e^-4	0.86	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17527785	3R_17527785_SNP [dm3] 3R_21702063_SNP [dm6]	T	C	1.440e^-4	0.86	INTRON CG31176
3R	8053494	3R_8053494_SNP [dm3] 3R_12227772_SNP [dm6]	A	T	1.442e^-4	0.86	INTERGENIC
2L	22626360	2L_22626360_SNP [dm3] 2L_22733628_SNP [dm6]	T	G	1.446e^-4	0.86	INTRON CG40006
3L	4175167	3L_4175167_SNP [dm3] 3L_4175167_SNP [dm6]	C	A	1.451e^-4	0.86	UTR_3_PRIME Teh4 INTRON CG18675
2R	14890886	2R_14890886_SNP [dm3] 2R_19003381_SNP [dm6]	A	T	1.453e^-4	0.86	DOWNSTREAM tn INTRON tn
2R	9966999	2R_9966999_INS [dm3] 2R_14079494_INS [dm6]	T	TAGTTAAAGT	1.455e^-4	0.86	INTRON Prosap
2L	581585	2L_581585_SNP [dm3] 2L_581585_SNP [dm6]	G	T	1.458e^-4	0.86	INTERGENIC
2L	10451368	2L_10451368_SNP [dm3] 2L_10451368_SNP [dm6]	G	A	1.462e^-4	0.86	SYNONYMOUS_CODING ppk10
2R	18380950	2R_18380950_SNP [dm3] 2R_22493445_SNP [dm6]	A	T	1.462e^-4	0.86	SYNONYMOUS_CODING CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4390443	3L_4390443_SNP [dm3] 3L_4390443_SNP [dm6]	C	T	1.464e^-4	0.86	SPLICE_SITE_REGION slow INTRON slow	TF binding site mE1_TFBS_cad
3R	5651214	3R_5651214_SNP [dm3] 3R_9825492_SNP [dm6]	T	A	1.465e^-4	0.86	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8695500	3R_8695500_SNP [dm3] 3R_12869778_SNP [dm6]	T	G	1.470e^-4	0.86	INTERGENIC
2L	521481	2L_521481_SNP [dm3] 2L_521481_SNP [dm6]	A	G	1.470e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521464	2L_521464_DEL [dm3] 2L_521464_DEL [dm6]	GCC	T	1.474e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521545	2L_521545_SNP [dm3] 2L_521545_SNP [dm6]	T	G	1.474e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22636855	2L_22636855_SNP [dm3] 2L_22744123_SNP [dm6]	G	A	1.475e^-4	0.86	INTRON CG40006
X	14823848	X_14823848_SNP [dm3] X_14929815_SNP [dm6]	C	T	1.481e^-4	0.86	UTR_5_PRIME Flo2 UPSTREAM CG32591 & 1 other INTRON Flo2
2L	14604160	2L_14604160_SNP [dm3] 2L_14604160_SNP [dm6]	T	C	1.485e^-4	0.86	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19108117	2R_19108117_SNP [dm3] 2R_23220594_SNP [dm6]	G	A	1.493e^-4	0.86	INTERGENIC
2R	5539794	2R_5539794_SNP [dm3] 2R_9652289_SNP [dm6]	A	G	1.494e^-4	0.86	INTRON Mmp2
2R	3602425	2R_3602425_SNP [dm3] 2R_7714920_SNP [dm6]	G	T	1.500e^-4	0.86	UPSTREAM CG1946 DOWNSTREAM CG1942 INTERGENIC
3R	9567215	3R_9567215_SNP [dm3] 3R_13741493_SNP [dm6]	T	C	1.504e^-4	0.86	INTRON CG34383
2L	8323603	2L_8323603_SNP [dm3] 2L_8323603_SNP [dm6]	T	C	1.507e^-4	0.86	INTRON CG7781
2L	2656190	2L_2656190_SNP [dm3] 2L_2656190_SNP [dm6]	C	A	1.519e^-4	0.86	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a
X	6605699	X_6605699_SNP [dm3] X_6711666_SNP [dm6]	C	T	1.524e^-4	0.86	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8300381	3L_8300381_INS [dm3] 3L_8307281_INS [dm6]	G	GTCAG	1.527e^-4	0.86	UTR_3_PRIME BI-1 UPSTREAM Gr66a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	733163	2L_733163_SNP [dm3] 2L_733163_SNP [dm6]	C	T	1.528e^-4	0.86	INTERGENIC
3L	13796745	3L_13796745_SNP [dm3] 3L_13803645_SNP [dm6]	A	G	1.529e^-4	0.86	UPSTREAM bru-3 INTERGENIC
2R	3769361	2R_3769361_SNP [dm3] 2R_7881856_SNP [dm6]	G	C	1.530e^-4	0.86	UTR_5_PRIME Dgk
2L	22609381	2L_22609381_SNP [dm3] 2L_22716649_SNP [dm6]	A	G	1.534e^-4	0.86	INTRON CG40006
3R	25257885	3R_25257885_SNP [dm3] 3R_29432163_SNP [dm6]	A	C	1.538e^-4	0.86	INTRON Ptp99A
2L	6753907	2L_6753907_SNP [dm3] 2L_6753907_SNP [dm6]	A	G	1.548e^-4	0.86	INTRON CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7838555	2L_7838555_SNP [dm3] 2L_7838555_SNP [dm6]	G	C	1.552e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7254087	2L_7254087_SNP [dm3] 2L_7254087_SNP [dm6]	T	G	1.552e^-4	0.86	INTERGENIC
3R	15190493	3R_15190493_SNP [dm3] 3R_19364771_SNP [dm6]	T	C	1.558e^-4	0.86	INTERGENIC
2L	7479022	2L_7479022_SNP [dm3] 2L_7479022_SNP [dm6]	G	A	1.559e^-4	0.86	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10691093	2L_10691093_SNP [dm3] 2L_10691093_SNP [dm6]	C	T	1.563e^-4	0.86	INTERGENIC
3R	26512832	3R_26512832_SNP [dm3] 3R_30687110_SNP [dm6]	T	C	1.574e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17359697	3L_17359697_SNP [dm3] 3L_17366597_SNP [dm6]	C	T	1.584e^-4	0.86	UPSTREAM CR45688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8783040	3R_8783040_INS [dm3] 3R_12957318_INS [dm6]	A	AA	1.585e^-4	0.86	INTRON grsm
3R	6289143	3R_6289143_INS [dm3] 3R_10463421_INS [dm6]	T	CA	1.586e^-4	0.86	EXON CR44955
2L	17181198	2L_17181198_SNP [dm3] 2L_17181198_SNP [dm6]	T	G	1.588e^-4	0.86	SYNONYMOUS_CODING Gr36c UPSTREAM CG31750	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7659881	X_7659881_SNP [dm3] X_7765848_SNP [dm6]	C	T	1.589e^-4	0.86	SYNONYMOUS_CODING Ir7a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16979463	2R_16979463_SNP [dm3] 2R_21091958_SNP [dm6]	T	A	1.594e^-4	0.86	UPSTREAM Rbpn-5 & 1 other INTERGENIC
2L	22621904	2L_22621904_SNP [dm3] 2L_22729172_SNP [dm6]	G	T	1.602e^-4	0.86	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15194859	2R_15194859_SNP [dm3] 2R_19307354_SNP [dm6]	C	A	1.604e^-4	0.86	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
2L	4911521	2L_4911521_DEL [dm3] 2L_4911521_DEL [dm6]	TA	C	1.625e^-4	0.86	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	792780	2L_792780_SNP [dm3] 2L_792780_SNP [dm6]	A	T	1.628e^-4	0.86	INTERGENIC
2R	9967029	2R_9967029_SNP [dm3] 2R_14079524_SNP [dm6]	G	A	1.629e^-4	0.86	INTRON Prosap
2L	19628808	2L_19628808_INS [dm3] 2L_19628808_INS [dm6]	T	TCAT	1.630e^-4	0.86	INTRON Lar
2L	12308261	2L_12308261_SNP [dm3] 2L_12308261_SNP [dm6]	C	T	1.632e^-4	0.86	INTRON aret
3L	13741729	3L_13741729_SNP [dm3] 3L_13748629_SNP [dm6]	G	T	1.633e^-4	0.86	INTRON bru-3
3L	8315123	3L_8315123_SNP [dm3] 3L_8322023_SNP [dm6]	G	A	1.633e^-4	0.86	SYNONYMOUS_CODING CG13670
2R	3348420	2R_3348420_SNP [dm3] 2R_7460915_SNP [dm6]	A	T	1.642e^-4	0.86	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
X	7939533	X_7939533_SNP [dm3] X_8045500_SNP [dm6]	C	T	1.644e^-4	0.86	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2L	16590554	2L_16590554_SNP [dm3] 2L_16590554_SNP [dm6]	C	A	1.647e^-4	0.86	INTRON CG42389
2R	3346011	2R_3346011_SNP [dm3] 2R_7458506_SNP [dm6]	A	G	1.652e^-4	0.86	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	1.656e^-4	0.86	INTRON A2bp1
2R	17340577	2R_17340577_SNP [dm3] 2R_21453072_SNP [dm6]	C	G	1.657e^-4	0.86	INTRON Sdc
2L	22626086	2L_22626086_SNP [dm3] 2L_22733354_SNP [dm6]	C	T	1.659e^-4	0.86	INTRON CG40006
3L	5378828	3L_5378828_SNP [dm3] 3L_5385728_SNP [dm6]	A	T	1.663e^-4	0.86	INTERGENIC
2R	15681703	2R_15681703_SNP [dm3] 2R_19794198_SNP [dm6]	A	G	1.674e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	22637098	2L_22637098_SNP [dm3] 2L_22744366_SNP [dm6]	A	C	1.683e^-4	0.86	INTRON CG40006
X	16783197	X_16783197_INS [dm3] X_16889164_INS [dm6]	T	CC	1.689e^-4	0.86	UPSTREAM CG13002 DOWNSTREAM CG4880 EXON CR43768
2L	6739508	2L_6739508_SNP [dm3] 2L_6739508_SNP [dm6]	T	C	1.706e^-4	0.86	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22639394	2L_22639394_SNP [dm3] 2L_22746662_SNP [dm6]	G	A	1.710e^-4	0.86	INTRON CG40006
2L	22621860	2L_22621860_SNP [dm3] 2L_22729128_SNP [dm6]	A	T	1.721e^-4	0.86	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	1.723e^-4	0.86	INTRON dpr6
2L	19636272	2L_19636272_DEL [dm3] 2L_19636272_DEL [dm6]	TTG	T	1.728e^-4	0.86	INTRON Lar
2R	5608339	2R_5608339_SNP [dm3] 2R_9720834_SNP [dm6]	C	A	1.731e^-4	0.86	INTRON sqa
3L	8314503	3L_8314503_SNP [dm3] 3L_8321403_SNP [dm6]	A	T	1.735e^-4	0.86	INTRON CG13670	TF binding site mE1_TFBS_cad
2L	10691095	2L_10691095_SNP [dm3] 2L_10691095_SNP [dm6]	A	C	1.737e^-4	0.86	INTERGENIC
2L	2995837	2L_2995837_SNP [dm3] 2L_2995837_SNP [dm6]	C	T	1.739e^-4	0.86	SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6739517	2L_6739517_SNP [dm3] 2L_6739517_SNP [dm6]	G	A	1.740e^-4	0.86	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18039222	2R_18039222_SNP [dm3] 2R_22151717_SNP [dm6]	A	T	1.746e^-4	0.86	INTRON a
2L	19897953	2L_19897953_SNP [dm3] 2L_19897953_SNP [dm6]	T	C	1.747e^-4	0.86	INTRON sick
3R	17906318	3R_17906318_SNP [dm3] 3R_22080596_SNP [dm6]	C	T	1.755e^-4	0.86	SYNONYMOUS_CODING CG13408
3R	9818569	3R_9818569_INS [dm3] 3R_13992847_INS [dm6]	G	GTTGT	1.761e^-4	0.86	INTRON rdx
2R	10951246	2R_10951246_SNP [dm3] 2R_15063741_SNP [dm6]	C	T	1.763e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	22625225	2L_22625225_SNP [dm3] 2L_22732493_SNP [dm6]	C	A	1.764e^-4	0.86	INTRON CG40006
3R	9567283	3R_9567283_SNP [dm3] 3R_13741561_SNP [dm6]	T	A	1.765e^-4	0.86	INTRON CG34383
2R	3078447	2R_3078447_SNP [dm3] 2R_7190942_SNP [dm6]	G	A	1.767e^-4	0.86	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3344532	2R_3344532_SNP [dm3] 2R_7457027_SNP [dm6]	A	G	1.768e^-4	0.86	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12945698	2L_12945698_SNP [dm3] 2L_12945698_SNP [dm6]	C	A	1.769e^-4	0.86	INTERGENIC
3R	26103195	3R_26103195_SNP [dm3] 3R_30277473_SNP [dm6]	C	T	1.769e^-4	0.86	UPSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8217622	3R_8217622_SNP [dm3] 3R_12391900_SNP [dm6]	C	G	1.774e^-4	0.86	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
3R	26441085	3R_26441085_SNP [dm3] 3R_30615363_SNP [dm6]	T	G	1.779e^-4	0.86	EXON CR45571
2L	22585349	2L_22585349_SNP [dm3] 2L_22692617_SNP [dm6]	C	T	1.791e^-4	0.86	INTRON CG40006	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22636266	2L_22636266_SNP [dm3] 2L_22743534_SNP [dm6]	G	T	1.792e^-4	0.86	INTRON CG40006
2L	22741905	2L_22741905_SNP [dm3] 2L_22849173_SNP [dm6]	G	C	1.793e^-4	0.86	UTR_3_PRIME CG17715 INTRON CG17715
2L	14599615	2L_14599615_SNP [dm3] 2L_14599615_SNP [dm6]	G	C	1.795e^-4	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc & 1 other DOWNSTREAM osp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16979333	2R_16979333_SNP [dm3] 2R_21091828_SNP [dm6]	C	A	1.798e^-4	0.86	UPSTREAM Rbpn-5 & 1 other INTERGENIC
2L	592833	2L_592833_SNP [dm3] 2L_592833_SNP [dm6]	T	G	1.799e^-4	0.86	INTRON Gsc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5361957	3L_5361957_DEL [dm3] 3L_5368857_DEL [dm6]	ATTAAACTGAGTATTTCGAA...	A	1.800e^-4	0.86	UPSTREAM CG10635 & 1 other INTERGENIC
2R	3047013	2R_3047013_SNP [dm3] 2R_7159508_SNP [dm6]	A	C	1.811e^-4	0.86	INTRON pk	enhancer mE1_CBP_Enhancers
3L	5692346	3L_5692346_SNP [dm3] 3L_5699246_SNP [dm6]	G	C	1.830e^-4	0.86	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	10707166	2R_10707166_SNP [dm3] 2R_14819661_SNP [dm6]	A	G	1.830e^-4	0.86	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16123149	2R_16123149_SNP [dm3] 2R_20235644_SNP [dm6]	G	T	1.838e^-4	0.86	NON_SYNONYMOUS_CODING CG44625 UPSTREAM CG11099 DOWNSTREAM CG11044 & 1 other
2L	5100424	2L_5100424_SNP [dm3] 2L_5100424_SNP [dm6]	G	A	1.839e^-4	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	19993068	3R_19993068_SNP [dm3] 3R_24167346_SNP [dm6]	G	A	1.844e^-4	0.86	SYNONYMOUS_CODING Apc2 DOWNSTREAM CG5510
X	14161051	X_14161051_SNP [dm3] X_14267018_SNP [dm6]	T	C	1.844e^-4	0.86	UPSTREAM CG13404 INTRON na
3L	4473317	3L_4473317_SNP [dm3] 3L_4473317_SNP [dm6]	G	A	1.848e^-4	0.86	SYNONYMOUS_CODING CG11349 DOWNSTREAM CG32248
2R	3068588	2R_3068588_SNP [dm3] 2R_7181083_SNP [dm6]	G	A	1.849e^-4	0.86	UPSTREAM CG30385 DOWNSTREAM CG33140 INTRON pk
3R	13930026	3R_13930026_SNP [dm3] 3R_18104304_SNP [dm6]	A	T	1.854e^-4	0.86	INTRON sr
2L	22626368	2L_22626368_SNP [dm3] 2L_22733636_SNP [dm6]	T	C	1.858e^-4	0.86	INTRON CG40006
3L	5669740	3L_5669740_SNP [dm3] 3L_5676640_SNP [dm6]	G	A	1.862e^-4	0.86	SYNONYMOUS_CODING sif
2R	4383359	2R_4383359_SNP [dm3] 2R_8495854_SNP [dm6]	C	T	1.865e^-4	0.86	INTRON mtt
2L	22636755	2L_22636755_SNP [dm3] 2L_22744023_SNP [dm6]	T	C	1.869e^-4	0.86	INTRON CG40006
2L	770147	2L_770147_SNP [dm3] 2L_770147_SNP [dm6]	T	G	1.876e^-4	0.86	INTERGENIC
2L	12308070	2L_12308070_SNP [dm3] 2L_12308070_SNP [dm6]	A	G	1.877e^-4	0.86	INTRON aret
3R	8782490	3R_8782490_SNP [dm3] 3R_12956768_SNP [dm6]	A	T	1.878e^-4	0.86	INTRON grsm
2R	3038378	2R_3038378_SNP [dm3] 2R_7150873_SNP [dm6]	G	T	1.884e^-4	0.86	UTR_5_PRIME pk DOWNSTREAM CR44200 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25973140	3R_25973140_SNP [dm3] 3R_30147418_SNP [dm6]	C	G	1.888e^-4	0.86	INTRON AdoR
2L	10956575	2L_10956575_SNP [dm3] 2L_10956575_SNP [dm6]	T	G	1.892e^-4	0.86	INTRON dpr2
3R	15151178	3R_15151178_SNP [dm3] 3R_19325456_SNP [dm6]	G	A	1.898e^-4	0.86	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9967048	2R_9967048_SNP [dm3] 2R_14079543_SNP [dm6]	G	T	1.900e^-4	0.86	INTRON Prosap
2L	7143208	2L_7143208_SNP [dm3] 2L_7143208_SNP [dm6]	T	A	1.901e^-4	0.86	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11378528	2L_11378528_SNP [dm3] 2L_11378528_SNP [dm6]	C	T	1.905e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12175448	2R_12175448_SNP [dm3] 2R_16287943_SNP [dm6]	C	T	1.912e^-4	0.86	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
3R	22614657	3R_22614657_SNP [dm3] 3R_26788935_SNP [dm6]	G	T	1.924e^-4	0.86	INTERGENIC
3R	7891091	3R_7891091_SNP [dm3] 3R_12065369_SNP [dm6]	T	C	1.942e^-4	0.86	INTERGENIC
3R	17576520	3R_17576520_SNP [dm3] 3R_21750798_SNP [dm6]	C	G	1.946e^-4	0.86	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9967024	2R_9967024_SNP [dm3] 2R_14079519_SNP [dm6]	A	T	1.963e^-4	0.86	INTRON Prosap
3R	15151196	3R_15151196_SNP [dm3] 3R_19325474_SNP [dm6]	A	T	1.966e^-4	0.86	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	1.969e^-4	0.86	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	9278831	3L_9278831_SNP [dm3] 3L_9285731_SNP [dm6]	T	G	1.974e^-4	0.86	UTR_3_PRIME GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8314431	3L_8314431_SNP [dm3] 3L_8321331_SNP [dm6]	C	T	1.974e^-4	0.86	INTRON CG13670	TF binding site mE1_TFBS_cad
3R	10662434	3R_10662434_SNP [dm3] 3R_14836712_SNP [dm6]	T	C	1.974e^-4	0.86	INTRON btsz
2L	11687016	2L_11687016_SNP [dm3] 2L_11687016_SNP [dm6]	G	A	1.976e^-4	0.86	INTERGENIC
2R	3348324	2R_3348324_SNP [dm3] 2R_7460819_SNP [dm6]	T	C	1.980e^-4	0.86	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
X	15419680	X_15419680_SNP [dm3] X_15525647_SNP [dm6]	A	G	1.986e^-4	0.86	INTRON Ac13E
2L	14598532	2L_14598532_SNP [dm3] 2L_14598532_SNP [dm6]	C	T	2.003e^-4	0.86	UPSTREAM tRNA:P:35Ba DOWNSTREAM osp & 1 other INTERGENIC
2R	9967014	2R_9967014_SNP [dm3] 2R_14079509_SNP [dm6]	T	G	2.003e^-4	0.86	INTRON Prosap
X	15419682	X_15419682_SNP [dm3] X_15525649_SNP [dm6]	A	G	2.003e^-4	0.86	INTRON Ac13E
2R	3031816	2R_3031816_SNP [dm3] 2R_7144311_SNP [dm6]	C	A	2.011e^-4	0.86	INTERGENIC
2L	2865463	2L_2865463_SNP [dm3] 2L_2865463_SNP [dm6]	C	G	2.015e^-4	0.86	INTRON CG2991	TF binding site BDTNP1_TFBS_da
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	2.015e^-4	0.86	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11902980	3R_11902980_SNP [dm3] 3R_16077258_SNP [dm6]	C	T	2.021e^-4	0.86	SYNONYMOUS_CODING Mhcl
2L	22585482	2L_22585482_SNP [dm3] 2L_22692750_SNP [dm6]	T	C	2.032e^-4	0.86	INTRON CG40006
2L	7483497	2L_7483497_INS [dm3] 2L_7483497_INS [dm6]	A	AGTATA	2.034e^-4	0.86	INTRON Ziz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4912312	2L_4912312_SNP [dm3] 2L_4912312_SNP [dm6]	G	A	2.037e^-4	0.86	INTRON hoe1
3R	23538207	3R_23538207_SNP [dm3] 3R_27712485_SNP [dm6]	C	G	2.040e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22170823	2L_22170823_SNP [dm3] 2L_22170823_SNP [dm6]	T	G	2.054e^-4	0.86	DOWNSTREAM CR44809 INTERGENIC
3R	10411169	3R_10411169_SNP [dm3] 3R_14585447_SNP [dm6]	C	T	2.076e^-4	0.86	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	2.082e^-4	0.86	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	5447409	3R_5447409_SNP [dm3] 3R_9621687_SNP [dm6]	G	C	2.084e^-4	0.86	NON_SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26196474	3R_26196474_SNP [dm3] 3R_30370752_SNP [dm6]	A	T	2.091e^-4	0.86	UTR_3_PRIME hdc
2R	16979409	2R_16979409_SNP [dm3] 2R_21091904_SNP [dm6]	T	C	2.107e^-4	0.86	UPSTREAM Rbpn-5 & 1 other INTERGENIC
3L	834580	3L_834580_SNP [dm3] 3L_834580_SNP [dm6]	G	A	2.107e^-4	0.86	SYNONYMOUS_CODING CG42553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23538214	3R_23538214_SNP [dm3] 3R_27712492_SNP [dm6]	T	C	2.108e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7068278	X_7068278_SNP [dm3] X_7174245_SNP [dm6]	C	T	2.108e^-4	0.86	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	15157199	3L_15157199_SNP [dm3] 3L_15164099_SNP [dm6]	G	A	2.113e^-4	0.86	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18746273	3R_18746273_SNP [dm3] 3R_22920551_SNP [dm6]	C	A	2.113e^-4	0.86	INTRON klg
2L	22580529	2L_22580529_SNP [dm3] 2L_22687797_SNP [dm6]	G	C	2.118e^-4	0.86	INTRON CG40006
3L	1358010	3L_1358010_SNP [dm3] 3L_1358010_SNP [dm6]	C	A	2.119e^-4	0.86	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	4912425	2L_4912425_SNP [dm3] 2L_4912425_SNP [dm6]	T	A	2.119e^-4	0.86	INTRON hoe1
2R	16128695	2R_16128695_SNP [dm3] 2R_20241190_SNP [dm6]	T	C	2.122e^-4	0.86	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
X	15419699	X_15419699_SNP [dm3] X_15525666_SNP [dm6]	T	C	2.125e^-4	0.86	INTRON Ac13E
2R	12699016	2R_12699016_INS [dm3] 2R_16811511_INS [dm6]	T	TG	2.132e^-4	0.86	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
2L	4786853	2L_4786853_SNP [dm3] 2L_4786853_SNP [dm6]	T	A	2.133e^-4	0.86	INTRON CG15630
3R	8695435	3R_8695435_SNP [dm3] 3R_12869713_SNP [dm6]	G	A	2.145e^-4	0.86	INTERGENIC
X	9197888	X_9197888_SNP [dm3] X_9303855_SNP [dm6]	C	T	2.146e^-4	0.86	DOWNSTREAM lz INTERGENIC
3R	9963311	3R_9963311_SNP [dm3] 3R_14137589_SNP [dm6]	C	T	2.153e^-4	0.86	INTERGENIC
2R	8904984	2R_8904984_SNP [dm3] 2R_13017479_SNP [dm6]	C	T	2.158e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4915900	2L_4915900_SNP [dm3] 2L_4915900_SNP [dm6]	A	T	2.166e^-4	0.86	UPSTREAM hoe1 INTRON hoe1
2L	4915920	2L_4915920_SNP [dm3] 2L_4915920_SNP [dm6]	T	C	2.166e^-4	0.86	UPSTREAM hoe1 INTRON hoe1
3R	23237682	3R_23237682_SNP [dm3] 3R_27411960_SNP [dm6]	T	C	2.166e^-4	0.86	INTRON side
3R	10411111	3R_10411111_SNP [dm3] 3R_14585389_SNP [dm6]	T	A	2.169e^-4	0.86	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3R	9722699	3R_9722699_SNP [dm3] 3R_13896977_SNP [dm6]	G	A	2.178e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	2042518	2R_2042518_INS [dm3] 2R_6155013_INS [dm6]	A	AA	2.179e^-4	0.86	INTRON EcR
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	2.194e^-4	0.86	DOWNSTREAM CG10096 & 1 other INTRON CG34402
3R	13181029	3R_13181029_INS [dm3] 3R_17355307_INS [dm6]	C	CCCCCACCACATTCATACAC...	2.199e^-4	0.86	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3R	25257911	3R_25257911_SNP [dm3] 3R_29432189_SNP [dm6]	A	T	2.209e^-4	0.86	INTRON Ptp99A
2L	4916065	2L_4916065_SNP [dm3] 2L_4916065_SNP [dm6]	G	T	2.210e^-4	0.86	UPSTREAM hoe1 INTRON hoe1
3R	10665706	3R_10665706_SNP [dm3] 3R_14839984_SNP [dm6]	A	C	2.215e^-4	0.86	INTRON btsz
2R	18713906	2R_18713906_SNP [dm3] 2R_22826383_SNP [dm6]	T	A	2.225e^-4	0.86	SYNONYMOUS_CODING CG30274 INTRON CG42284
2L	4911991	2L_4911991_SNP [dm3] 2L_4911991_SNP [dm6]	G	T	2.226e^-4	0.86	INTRON hoe1	TF binding site mE1_TFBS_chinmo
3R	16522027	3R_16522027_SNP [dm3] 3R_20696305_SNP [dm6]	T	G	2.231e^-4	0.86	INTRON Oamb
3L	10462671	3L_10462671_SNP [dm3] 3L_10469571_SNP [dm6]	C	G	2.234e^-4	0.86	DOWNSTREAM S-Lap3 INTERGENIC
3R	1979651	3R_1979651_SNP [dm3] 3R_6153929_SNP [dm6]	C	T	2.244e^-4	0.86	INTRON CG31559
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	2.245e^-4	0.86	SYNONYMOUS_CODING pps
2L	6739504	2L_6739504_SNP [dm3] 2L_6739504_SNP [dm6]	T	G	2.247e^-4	0.86	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1563013	2R_1563013_SNP [dm3] 2R_5675508_SNP [dm6]	C	A	2.248e^-4	0.86	INTERGENIC
2R	16147386	2R_16147386_SNP [dm3] 2R_20259881_SNP [dm6]	C	T	2.252e^-4	0.86	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16147391	2R_16147391_SNP [dm3] 2R_20259886_SNP [dm6]	G	A	2.252e^-4	0.86	NON_SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26217918	3R_26217918_SNP [dm3] 3R_30392196_SNP [dm6]	G	A	2.257e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14004360	2R_14004360_SNP [dm3] 2R_18116855_SNP [dm6]	C	A	2.267e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4786836	2L_4786836_SNP [dm3] 2L_4786836_SNP [dm6]	T	C	2.274e^-4	0.86	INTRON CG15630
2L	4929825	2L_4929825_SNP [dm3] 2L_4929825_SNP [dm6]	C	A	2.279e^-4	0.86	INTRON hoe1
2L	22626562	2L_22626562_SNP [dm3] 2L_22733830_SNP [dm6]	A	T	2.282e^-4	0.86	INTRON CG40006
2L	5288399	2L_5288399_SNP [dm3] 2L_5288399_SNP [dm6]	C	T	2.288e^-4	0.86	UPSTREAM vri DOWNSTREAM CR44742 INTRON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18973528	X_18973528_SNP [dm3] X_19079495_SNP [dm6]	C	T	2.293e^-4	0.86	DOWNSTREAM CG7406 INTERGENIC
2L	4925818	2L_4925818_SNP [dm3] 2L_4925818_SNP [dm6]	T	C	2.297e^-4	0.86	INTRON hoe1
3R	22268091	3R_22268091_SNP [dm3] 3R_26442369_SNP [dm6]	G	C	2.300e^-4	0.86	INTRON tx
2R	13717436	2R_13717436_SNP [dm3] 2R_17829931_SNP [dm6]	A	C	2.306e^-4	0.86	INTRON grh	regulatory region REDfly_CRMs
3L	3228055	3L_3228055_SNP [dm3] 3L_3228055_SNP [dm6]	C	T	2.308e^-4	0.86	INTRON CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10177300	3L_10177300_SNP [dm3] 3L_10184200_SNP [dm6]	G	C	2.308e^-4	0.86	INTRON dpr10
2L	7237640	2L_7237640_SNP [dm3] 2L_7237640_SNP [dm6]	C	T	2.308e^-4	0.86	INTRON Ndae1
2L	5100537	2L_5100537_SNP [dm3] 2L_5100537_SNP [dm6]	G	A	2.324e^-4	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	11378536	2L_11378536_SNP [dm3] 2L_11378536_SNP [dm6]	A	C	2.325e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	7318218	3R_7318218_SNP [dm3] 3R_11492496_SNP [dm6]	C	A	2.328e^-4	0.86	INTERGENIC
2R	18039221	2R_18039221_SNP [dm3] 2R_22151716_SNP [dm6]	A	C	2.337e^-4	0.86	INTRON a
2L	6581270	2L_6581270_SNP [dm3] 2L_6581270_SNP [dm6]	A	T	2.339e^-4	0.86	INTRON CG11319
3R	15463560	3R_15463560_SNP [dm3] 3R_19637838_SNP [dm6]	T	C	2.341e^-4	0.86	INTRON subdued
2L	14363628	2L_14363628_SNP [dm3] 2L_14363628_SNP [dm6]	C	A	2.346e^-4	0.86	NON_SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25067678	3R_25067678_SNP [dm3] 3R_29241956_SNP [dm6]	G	A	2.363e^-4	0.86	NON_SYNONYMOUS_CODING CG31445
2L	22626162	2L_22626162_SNP [dm3] 2L_22733430_SNP [dm6]	A	G	2.363e^-4	0.86	INTRON CG40006
2R	12664609	2R_12664609_DEL [dm3] 2R_16777104_DEL [dm6]	AA	A	2.364e^-4	0.86	INTERGENIC
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	2.368e^-4	0.86	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8003612	3R_8003612_SNP [dm3] 3R_12177890_SNP [dm6]	G	A	2.375e^-4	0.86	INTERGENIC
2L	6401148	2L_6401148_SNP [dm3] 2L_6401148_SNP [dm6]	A	T	2.386e^-4	0.86	INTRON CG42368
X	6870203	X_6870203_SNP [dm3] X_6976170_SNP [dm6]	T	A	2.387e^-4	0.86	INTRON ogre	TF binding site mE1_TFBS_HSA
2R	12267661	2R_12267661_SNP [dm3] 2R_16380156_SNP [dm6]	C	T	2.400e^-4	0.86	UPSTREAM CG43187 DOWNSTREAM CR45316 EXON CR45317
3L	3707204	3L_3707204_SNP [dm3] 3L_3707204_SNP [dm6]	C	T	2.412e^-4	0.86	INTERGENIC
2R	3349315	2R_3349315_SNP [dm3] 2R_7461810_SNP [dm6]	A	G	2.415e^-4	0.86	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2L	22535359	2L_22535359_SNP [dm3] 2L_22642627_SNP [dm6]	T	A	2.415e^-4	0.86	INTRON CG40006
2R	9967046	2R_9967046_SNP [dm3] 2R_14079541_SNP [dm6]	G	T	2.416e^-4	0.86	INTRON Prosap
3R	13505297	3R_13505297_SNP [dm3] 3R_17679575_SNP [dm6]	C	G	2.417e^-4	0.86	UPSTREAM alt INTRON alt
3R	13505298	3R_13505298_SNP [dm3] 3R_17679576_SNP [dm6]	C	T	2.417e^-4	0.86	UPSTREAM alt INTRON alt
2L	22535360	2L_22535360_SNP [dm3] 2L_22642628_SNP [dm6]	T	G	2.420e^-4	0.86	INTRON CG40006
3R	23306816	3R_23306816_SNP [dm3] 3R_27481094_SNP [dm6]	C	T	2.421e^-4	0.86	UTR_3_PRIME Cyp6a18 DOWNSTREAM Cyp6a18
X	15666240	X_15666240_SNP [dm3] X_15772207_SNP [dm6]	C	A	2.428e^-4	0.86	NON_SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
X	21850004	X_21850004_SNP [dm3] X_22448168_SNP [dm6]	G	A	2.428e^-4	0.86	DOWNSTREAM CG14621 INTRON CG14615
2R	12857134	2R_12857134_SNP [dm3] 2R_16969629_SNP [dm6]	A	C	2.437e^-4	0.86	EXON CR44377
2L	22165505	2L_22165505_SNP [dm3] 2L_22165505_SNP [dm6]	A	T	2.441e^-4	0.86	UTR_3_PRIME CG42748 DOWNSTREAM Clamp & 1 other
3R	16733992	3R_16733992_SNP [dm3] 3R_20908270_SNP [dm6]	G	T	2.442e^-4	0.86	DOWNSTREAM CG31191 & 1 other INTERGENIC	transposable element FlyBase
3R	20131833	3R_20131833_SNP [dm3] 3R_24306111_SNP [dm6]	T	A	2.460e^-4	0.86	NON_SYNONYMOUS_CODING crb	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	22535351	2L_22535351_SNP [dm3] 2L_22642619_SNP [dm6]	A	G	2.466e^-4	0.86	INTRON CG40006
3R	25260924	3R_25260924_SNP [dm3] 3R_29435202_SNP [dm6]	T	A	2.475e^-4	0.86	INTRON Ptp99A
3R	26101258	3R_26101258_SNP [dm3] 3R_30275536_SNP [dm6]	A	T	2.486e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12699783	2R_12699783_SNP [dm3] 2R_16812278_SNP [dm6]	T	A	2.487e^-4	0.86	EXON CR44379
2R	5105518	2R_5105518_SNP [dm3] 2R_9218013_SNP [dm6]	C	A	2.491e^-4	0.86	INTERGENIC
2L	4925682	2L_4925682_SNP [dm3] 2L_4925682_SNP [dm6]	T	A	2.491e^-4	0.86	INTRON hoe1
3R	26505251	3R_26505251_SNP [dm3] 3R_30679529_SNP [dm6]	C	T	2.494e^-4	0.86	INTERGENIC
2R	17812003	2R_17812003_SNP [dm3] 2R_21924498_SNP [dm6]	T	A	2.497e^-4	0.86	INTRON Fili
2L	4925681	2L_4925681_SNP [dm3] 2L_4925681_SNP [dm6]	T	A	2.505e^-4	0.86	INTRON hoe1
3R	19675278	3R_19675278_SNP [dm3] 3R_23849556_SNP [dm6]	C	T	2.511e^-4	0.86	UTR_3_PRIME CG34355
2R	13901803	2R_13901803_DEL [dm3] 2R_18014298_DEL [dm6]	CGT	C	2.512e^-4	0.86	INTERGENIC
2L	15124100	2L_15124100_SNP [dm3] 2L_15124100_SNP [dm6]	G	C	2.526e^-4	0.86	INTERGENIC
2L	6402061	2L_6402061_SNP [dm3] 2L_6402061_SNP [dm6]	C	G	2.526e^-4	0.86	INTRON CG42368
2R	5253797	2R_5253797_SNP [dm3] 2R_9366292_SNP [dm6]	G	A	2.532e^-4	0.86	INTRON CG13954
3L	15957763	3L_15957763_SNP [dm3] 3L_15964663_SNP [dm6]	A	G	2.532e^-4	0.86	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11422505	2R_11422505_SNP [dm3] 2R_15535000_SNP [dm6]	T	G	2.535e^-4	0.86	INTRON CG30471
2R	17606892	2R_17606892_SNP [dm3] 2R_21719387_SNP [dm6]	A	G	2.536e^-4	0.86	SYNONYMOUS_CODING Tango11 DOWNSTREAM CG30398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
2L	1054444	2L_1054444_DEL [dm3] 2L_1054444_DEL [dm6]	TTT	T	2.551e^-4	0.86	INTRON S	TF binding site BDTNP1_TFBS_twi
2R	4750026	2R_4750026_SNP [dm3] 2R_8862521_SNP [dm6]	A	G	2.562e^-4	0.86	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11092443	2R_11092443_SNP [dm3] 2R_15204938_SNP [dm6]	A	G	2.565e^-4	0.86	DOWNSTREAM CG11807 EXON Ir51a
3R	22118475	3R_22118475_SNP [dm3] 3R_26292753_SNP [dm6]	A	T	2.571e^-4	0.86	INTERGENIC
2L	14599306	2L_14599306_SNP [dm3] 2L_14599306_SNP [dm6]	G	T	2.574e^-4	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3259111	X_3259111_SNP [dm3] X_3365078_SNP [dm6]	T	C	2.578e^-4	0.86	INTERGENIC
2R	15716446	2R_15716446_SNP [dm3] 2R_19828941_SNP [dm6]	G	A	2.584e^-4	0.86	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21178791	X_21178791_SNP [dm3] X_21307764_SNP [dm6]	C	T	2.586e^-4	0.86	SYNONYMOUS_CODING CG1801	TF binding site BDTNP1_TFBS_twi
3L	890981	3L_890981_SNP [dm3] 3L_890981_SNP [dm6]	G	A	2.587e^-4	0.86	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7388450	2L_7388450_INS [dm3] 2L_7388450_INS [dm6]	A	ATA	2.596e^-4	0.86	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24848600	3R_24848600_SNP [dm3] 3R_29022878_SNP [dm6]	T	G	2.599e^-4	0.86	UPSTREAM CR44264 EXON CR45567
3R	21107152	3R_21107152_DEL [dm3] 3R_25281430_DEL [dm6]	GGATC	G	2.600e^-4	0.86	UPSTREAM CG11892 INTERGENIC
3R	17576512	3R_17576512_SNP [dm3] 3R_21750790_SNP [dm6]	T	G	2.604e^-4	0.86	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8150598	2L_8150598_SNP [dm3] 2L_8150598_SNP [dm6]	T	C	2.609e^-4	0.86	INTRON CG8552 & 1 other
X	4437897	X_4437897_SNP [dm3] X_4543864_SNP [dm6]	C	G	2.614e^-4	0.86	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
2R	12263585	2R_12263585_SNP [dm3] 2R_16376080_SNP [dm6]	C	A	2.619e^-4	0.86	INTERGENIC
2L	13028972	2L_13028972_SNP [dm3] 2L_13028972_SNP [dm6]	C	T	2.620e^-4	0.86	NON_SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20521359	2R_20521359_SNP [dm3] 2R_24633836_SNP [dm6]	T	G	2.623e^-4	0.86	UPSTREAM CR43787 DOWNSTREAM Cyp9c1 INTRON CG13594
2R	14521991	2R_14521991_SNP [dm3] 2R_18634486_SNP [dm6]	C	T	2.630e^-4	0.86	INTRON CG30122	TF binding site BDTNP1_TFBS_dl
3R	13501833	3R_13501833_SNP [dm3] 3R_17676111_SNP [dm6]	G	C	2.637e^-4	0.86	SYNONYMOUS_CODING alt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13503328	3R_13503328_SNP [dm3] 3R_17677606_SNP [dm6]	G	T	2.637e^-4	0.86	NON_SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	12000032	2R_12000032_SNP [dm3] 2R_16112527_SNP [dm6]	G	C	2.643e^-4	0.86	NON_SYNONYMOUS_CODING Asph
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	2.644e^-4	0.86	INTERGENIC
2R	15715756	2R_15715756_SNP [dm3] 2R_19828251_SNP [dm6]	C	G	2.650e^-4	0.86	SYNONYMOUS_CODING Toll-7	TF binding site mE1_TFBS_sens
X	12873532	X_12873532_SNP [dm3] X_12979499_SNP [dm6]	C	T	2.655e^-4	0.86	INTERGENIC
3R	9740632	3R_9740632_SNP [dm3] 3R_13914910_SNP [dm6]	G	A	2.657e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26499145	3R_26499145_SNP [dm3] 3R_30673423_SNP [dm6]	T	A	2.666e^-4	0.86	INTERGENIC
3R	13509221	3R_13509221_SNP [dm3] 3R_17683499_SNP [dm6]	G	A	2.678e^-4	0.86	NON_SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13511637	3R_13511637_SNP [dm3] 3R_17685915_SNP [dm6]	G	A	2.678e^-4	0.86	UTR_3_PRIME CG31249 UPSTREAM CG31251 DOWNSTREAM CG31360
2L	14599303	2L_14599303_INS [dm3] 2L_14599303_INS [dm6]	A	AC	2.680e^-4	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6211981	2L_6211981_SNP [dm3] 2L_6211981_SNP [dm6]	C	T	2.684e^-4	0.86	DOWNSTREAM CG34380 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13049282	2R_13049282_SNP [dm3] 2R_17161777_SNP [dm6]	G	A	2.696e^-4	0.86	UPSTREAM CG30457 INTERGENIC
2L	22600158	2L_22600158_DEL [dm3] 2L_22707426_DEL [dm6]	GGGGTC	T	2.697e^-4	0.86	INTRON CG40006
2L	2545960	2L_2545960_SNP [dm3] 2L_2545960_SNP [dm6]	C	A	2.703e^-4	0.86	INTERGENIC
3R	2987318	3R_2987318_SNP [dm3] 3R_7161596_SNP [dm6]	G	A	2.703e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9642907	3R_9642907_DEL [dm3] 3R_13817185_DEL [dm6]	TTATA	T	2.703e^-4	0.86	DOWNSTREAM CR43642 INTERGENIC
3R	13512984	3R_13512984_SNP [dm3] 3R_17687262_SNP [dm6]	T	A	2.706e^-4	0.86	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
X	19341618	X_19341618_INS [dm3] X_19447585_INS [dm6]	T	TA	2.706e^-4	0.86	INTRON kek5
2L	22631833	2L_22631833_SNP [dm3] 2L_22739101_SNP [dm6]	A	T	2.711e^-4	0.86	INTRON CG40006
2L	1744564	2L_1744564_SNP [dm3] 2L_1744564_SNP [dm6]	G	A	2.717e^-4	0.86	INTRON CG17646
3L	12355165	3L_12355165_SNP [dm3] 3L_12362065_SNP [dm6]	C	G	2.720e^-4	0.86	INTERGENIC
2L	521283	2L_521283_SNP [dm3] 2L_521283_SNP [dm6]	A	C	2.722e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	9818590	3R_9818590_SNP [dm3] 3R_13992868_SNP [dm6]	G	T	2.730e^-4	0.86	INTRON rdx
2L	22629896	2L_22629896_SNP [dm3] 2L_22737164_SNP [dm6]	G	C	2.732e^-4	0.86	INTRON CG40006
2L	10064036	2L_10064036_DEL [dm3] 2L_10064036_DEL [dm6]	CAATCTTAC	C	2.744e^-4	0.86	DOWNSTREAM CG44153 & 1 other INTERGENIC
X	12873545	X_12873545_SNP [dm3] X_12979512_SNP [dm6]	A	C	2.744e^-4	0.86	INTERGENIC
2R	5567184	2R_5567184_SNP [dm3] 2R_9679679_SNP [dm6]	G	A	2.748e^-4	0.86	INTRON Mmp2
2L	12987459	2L_12987459_SNP [dm3] 2L_12987459_SNP [dm6]	C	T	2.751e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	528151	2L_528151_SNP [dm3] 2L_528151_SNP [dm6]	C	T	2.752e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs
2L	15805007	2L_15805007_SNP [dm3] 2L_15805007_SNP [dm6]	C	A	2.753e^-4	0.86	INTERGENIC
3R	13509535	3R_13509535_SNP [dm3] 3R_17683813_SNP [dm6]	C	T	2.762e^-4	0.86	NON_SYNONYMOUS_CODING CG31251 DOWNSTREAM CG7655	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12562709	2R_12562709_SNP [dm3] 2R_16675204_SNP [dm6]	G	C	2.765e^-4	0.86	SYNONYMOUS_CODING CG30463
2R	3408352	2R_3408352_SNP [dm3] 2R_7520847_SNP [dm6]	G	T	2.770e^-4	0.86	SYNONYMOUS_CODING CG2144	TF binding site mE1_TFBS_cad
2L	10455834	2L_10455834_SNP [dm3] 2L_10455834_SNP [dm6]	T	G	2.771e^-4	0.86	UTR_5_PRIME CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22186028	2L_22186028_INS [dm3] 2L_22186028_INS [dm6]	C	GA	2.777e^-4	0.86	INTERGENIC
2L	14599305	2L_14599305_SNP [dm3] 2L_14599305_SNP [dm6]	C	T	2.781e^-4	0.86	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22637965	2L_22637965_SNP [dm3] 2L_22745233_SNP [dm6]	A	G	2.790e^-4	0.86	INTRON CG40006
3L	5275695	3L_5275695_SNP [dm3] 3L_5282595_SNP [dm6]	A	T	2.805e^-4	0.86	INTERGENIC
2L	14598674	2L_14598674_SNP [dm3] 2L_14598674_SNP [dm6]	G	A	2.808e^-4	0.86	UPSTREAM tRNA:P:35Ba & 1 other DOWNSTREAM osp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3596788	2R_3596788_SNP [dm3] 2R_7709283_SNP [dm6]	T	G	2.810e^-4	0.86	UPSTREAM CG1941 & 1 other INTERGENIC
2L	7137709	2L_7137709_SNP [dm3] 2L_7137709_SNP [dm6]	G	A	2.821e^-4	0.86	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7137766	2L_7137766_SNP [dm3] 2L_7137766_SNP [dm6]	C	T	2.821e^-4	0.86	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	2.823e^-4	0.86	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
3L	12288648	3L_12288648_SNP [dm3] 3L_12295548_SNP [dm6]	T	G	2.826e^-4	0.86	INTRON CG4328
2L	10352311	2L_10352311_DEL [dm3] 2L_10352311_DEL [dm6]	GG	C	2.827e^-4	0.86	UPSTREAM CG34367 INTRON CG34367
2L	22626074	2L_22626074_SNP [dm3] 2L_22733342_SNP [dm6]	G	A	2.828e^-4	0.86	INTRON CG40006
2L	9174424	2L_9174424_SNP [dm3] 2L_9174424_SNP [dm6]	G	A	2.833e^-4	0.86	INTRON tai
2L	9174443	2L_9174443_SNP [dm3] 2L_9174443_SNP [dm6]	C	G	2.833e^-4	0.86	INTRON tai
3R	14889966	3R_14889966_SNP [dm3] 3R_19064244_SNP [dm6]	C	T	2.838e^-4	0.86	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2L	4893000	2L_4893000_SNP [dm3] 2L_4893000_SNP [dm6]	A	T	2.841e^-4	0.86	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	10797735	2L_10797735_SNP [dm3] 2L_10797735_SNP [dm6]	G	T	2.842e^-4	0.86	INTRON CG31869
2R	18248790	2R_18248790_SNP [dm3] 2R_22361285_SNP [dm6]	T	C	2.846e^-4	0.86	INTRON Liprin-gamma
2L	22596763	2L_22596763_SNP [dm3] 2L_22704031_SNP [dm6]	A	C	2.846e^-4	0.86	INTRON CG40006
3R	8796996	3R_8796996_SNP [dm3] 3R_12971274_SNP [dm6]	G	A	2.848e^-4	0.86	INTRON CG7381
2R	9967049	2R_9967049_SNP [dm3] 2R_14079544_SNP [dm6]	A	T	2.850e^-4	0.86	INTRON Prosap
2L	1449433	2L_1449433_SNP [dm3] 2L_1449433_SNP [dm6]	C	T	2.851e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5232066	2R_5232066_SNP [dm3] 2R_9344561_SNP [dm6]	T	A	2.858e^-4	0.86	UPSTREAM Or45a INTRON CG13954 & 1 other
2L	4786859	2L_4786859_SNP [dm3] 2L_4786859_SNP [dm6]	A	G	2.864e^-4	0.86	INTRON CG15630
3R	13504021	3R_13504021_SNP [dm3] 3R_17678299_SNP [dm6]	G	T	2.865e^-4	0.86	INTRON alt	TF binding site mE1_TFBS_inv
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	2.866e^-4	0.86	UPSTREAM CR44264 EXON CR45567
2L	6570667	2L_6570667_SNP [dm3] 2L_6570667_SNP [dm6]	T	G	2.870e^-4	0.86	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_hb
2R	12857184	2R_12857184_SNP [dm3] 2R_16969679_SNP [dm6]	T	C	2.871e^-4	0.86	EXON CR44377
3R	26829147	3R_26829147_SNP [dm3] 3R_31003425_SNP [dm6]	T	C	2.881e^-4	0.86	INTRON 5-HT7
2R	5452090	2R_5452090_SNP [dm3] 2R_9564585_SNP [dm6]	G	A	2.886e^-4	0.86	DOWNSTREAM CG1809 EXON CR45281	TF binding site mE1_TFBS_HSA
2R	9967042	2R_9967042_SNP [dm3] 2R_14079537_SNP [dm6]	C	T	2.890e^-4	0.86	INTRON Prosap
3L	19530838	3L_19530838_SNP [dm3] 3L_19537738_SNP [dm6]	A	G	2.904e^-4	0.86	DOWNSTREAM CG9279 INTRON Cpr76Bd
3L	21059924	3L_21059924_SNP [dm3] 3L_21066824_SNP [dm6]	A	G	2.910e^-4	0.86	DOWNSTREAM CG43072 INTRON siz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17181122	2L_17181122_SNP [dm3] 2L_17181122_SNP [dm6]	C	A	2.917e^-4	0.86	NON_SYNONYMOUS_CODING Gr36c UPSTREAM CG31750	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22246415	3R_22246415_SNP [dm3] 3R_26420693_SNP [dm6]	C	A	2.921e^-4	0.86	INTERGENIC
2L	14598527	2L_14598527_SNP [dm3] 2L_14598527_SNP [dm6]	C	A	2.922e^-4	0.86	UPSTREAM tRNA:P:35Ba DOWNSTREAM osp & 1 other INTERGENIC
2L	12589469	2L_12589469_SNP [dm3] 2L_12589469_SNP [dm6]	C	T	2.925e^-4	0.86	INTRON nub	TF binding site mE1_TFBS_cad
2L	14244622	2L_14244622_SNP [dm3] 2L_14244622_SNP [dm6]	G	A	2.930e^-4	0.86	INTERGENIC
3L	12050865	3L_12050865_SNP [dm3] 3L_12057765_SNP [dm6]	C	T	2.933e^-4	0.86	INTRON rols
3R	26184974	3R_26184974_SNP [dm3] 3R_30359252_SNP [dm6]	G	T	2.940e^-4	0.86	INTRON hdc	TF binding site mE1_TFBS_chinmo
2L	22322762	2L_22322762_SNP [dm3] 2L_22322762_SNP [dm6]	G	T	2.952e^-4	0.86	INTRON CG17018
2R	12857130	2R_12857130_SNP [dm3] 2R_16969625_SNP [dm6]	A	T	2.962e^-4	0.86	EXON CR44377
2R	17807287	2R_17807287_SNP [dm3] 2R_21919782_SNP [dm6]	A	G	2.963e^-4	0.86	INTRON Fili
2R	13901771	2R_13901771_SNP [dm3] 2R_18014266_SNP [dm6]	C	T	2.975e^-4	0.86	INTERGENIC
3L	832190	3L_832190_SNP [dm3] 3L_832190_SNP [dm6]	C	T	2.977e^-4	0.86	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 DOWNSTREAM snoRNA:Psi28S-3308 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9631339	3R_9631339_SNP [dm3] 3R_13805617_SNP [dm6]	A	G	2.990e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9631347	3R_9631347_SNP [dm3] 3R_13805625_SNP [dm6]	G	T	2.991e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8470294	2L_8470294_SNP [dm3] 2L_8470294_SNP [dm6]	A	T	2.992e^-4	0.86	INTRON d	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25262086	3R_25262086_DEL [dm3] 3R_29436364_DEL [dm6]	TTCGT	T	2.992e^-4	0.86	INTRON Ptp99A
2R	6916448	2R_6916448_SNP [dm3] 2R_11028943_SNP [dm6]	T	G	3.016e^-4	0.86	INTRON luna
2R	16150038	2R_16150038_SNP [dm3] 2R_20262533_SNP [dm6]	G	A	3.028e^-4	0.86	SYNONYMOUS_CODING PCNA DOWNSTREAM Hsl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9205201	2L_9205201_SNP [dm3] 2L_9205201_SNP [dm6]	A	T	3.032e^-4	0.86	INTRON tai	TF binding site mE1_TFBS_Trl
3R	13504949	3R_13504949_INS [dm3] 3R_17679227_INS [dm6]	C	CTCACTGTC	3.033e^-4	0.86	UTR_5_PRIME alt UPSTREAM alt INTRON alt
X	9197805	X_9197805_SNP [dm3] X_9303772_SNP [dm6]	A	T	3.069e^-4	0.86	DOWNSTREAM lz INTERGENIC
2L	5100490	2L_5100490_SNP [dm3] 2L_5100490_SNP [dm6]	G	T	3.072e^-4	0.86	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	4917241	2L_4917241_SNP [dm3] 2L_4917241_SNP [dm6]	G	A	3.076e^-4	0.86	INTRON hoe1
3R	22753405	3R_22753405_SNP [dm3] 3R_26927683_SNP [dm6]	T	A	3.079e^-4	0.86	INTRON sda
X	20027451	X_20027451_SNP [dm3] X_20133418_SNP [dm6]	C	T	3.086e^-4	0.86	UPSTREAM CG15322 INTERGENIC
3R	20132007	3R_20132007_SNP [dm3] 3R_24306285_SNP [dm6]	T	C	3.087e^-4	0.86	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	745889	2L_745889_SNP [dm3] 2L_745889_SNP [dm6]	C	T	3.091e^-4	0.86	INTERGENIC
3R	14864566	3R_14864566_SNP [dm3] 3R_19038844_SNP [dm6]	C	T	3.098e^-4	0.86	INTRON CG6026
2L	22631818	2L_22631818_SNP [dm3] 2L_22739086_SNP [dm6]	T	C	3.098e^-4	0.86	INTRON CG40006
X	16802166	X_16802166_SNP [dm3] X_16908133_SNP [dm6]	A	T	3.106e^-4	0.86	INTRON CR44754
2L	11770075	2L_11770075_SNP [dm3] 2L_11770075_SNP [dm6]	A	G	3.108e^-4	0.86	INTERGENIC
2L	7201759	2L_7201759_INS [dm3] 2L_7201759_INS [dm6]	T	TT	3.113e^-4	0.86	INTRON CG4502
2L	7850188	2L_7850188_SNP [dm3] 2L_7850188_SNP [dm6]	T	C	3.119e^-4	0.86	INTRON CG14535
2R	12001451	2R_12001451_SNP [dm3] 2R_16113946_SNP [dm6]	A	T	3.122e^-4	0.86	INTRON Asph
2L	552736	2L_552736_SNP [dm3] 2L_552736_SNP [dm6]	T	C	3.123e^-4	0.86	START_GAINED Ets21C UTR_5_PRIME Ets21C UPSTREAM Ets21C
3L	5896721	3L_5896721_SNP [dm3] 3L_5903621_SNP [dm6]	T	G	3.144e^-4	0.86	SYNONYMOUS_CODING CG32413 DOWNSTREAM CG10486
2R	14586312	2R_14586312_SNP [dm3] 2R_18698807_SNP [dm6]	C	T	3.147e^-4	0.86	INTRON Sik3
2R	18490195	2R_18490195_SNP [dm3] 2R_22602690_SNP [dm6]	A	G	3.155e^-4	0.86	INTRON CG4294
3L	11117167	3L_11117167_SNP [dm3] 3L_11124067_SNP [dm6]	A	G	3.172e^-4	0.86	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12001402	2R_12001402_SNP [dm3] 2R_16113897_SNP [dm6]	A	G	3.172e^-4	0.86	INTRON Asph
3R	9642047	3R_9642047_SNP [dm3] 3R_13816325_SNP [dm6]	T	C	3.175e^-4	0.86	DOWNSTREAM CR43641 EXON CR43642
3R	17920194	3R_17920194_SNP [dm3] 3R_22094472_SNP [dm6]	A	G	3.176e^-4	0.86	INTRON CG5778
2L	8716032	2L_8716032_SNP [dm3] 2L_8716032_SNP [dm6]	A	C	3.185e^-4	0.86	INTRON raw
2R	12664432	2R_12664432_SNP [dm3] 2R_16776927_SNP [dm6]	A	G	3.186e^-4	0.86	INTERGENIC
2L	855039	2L_855039_SNP [dm3] 2L_855039_SNP [dm6]	C	G	3.190e^-4	0.86	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site mE1_TFBS_bab1
2L	1195464	2L_1195464_DEL [dm3] 2L_1195464_DEL [dm6]	AG	A	3.199e^-4	0.86	INTRON CG5001
3L	15476310	3L_15476310_SNP [dm3] 3L_15483210_SNP [dm6]	G	A	3.199e^-4	0.86	INTERGENIC
X	21850002	X_21850002_SNP [dm3] X_22448166_SNP [dm6]	G	T	3.215e^-4	0.86	DOWNSTREAM CG14621 INTRON CG14615
2L	22637027	2L_22637027_DEL [dm3] 2L_22744295_DEL [dm6]	GTGCC	AA	3.216e^-4	0.86	INTRON CG40006
X	14681588	X_14681588_SNP [dm3] X_14787555_SNP [dm6]	T	C	3.216e^-4	0.86	UTR_3_PRIME rut EXON CR45522
3R	19735272	3R_19735272_SNP [dm3] 3R_23909550_SNP [dm6]	A	T	3.233e^-4	0.86	INTRON sba
3L	8431229	3L_8431229_DEL [dm3] 3L_8438129_DEL [dm6]	GCCAATAG	G	3.238e^-4	0.86	INTRON Unr
3L	651081	3L_651081_SNP [dm3] 3L_651081_SNP [dm6]	C	T	3.247e^-4	0.86	SYNONYMOUS_CODING Gale DOWNSTREAM CG3402	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8385971	2R_8385971_SNP [dm3] 2R_12498466_SNP [dm6]	C	T	3.252e^-4	0.86	INTRON fdl & 1 other
2L	22621339	2L_22621339_SNP [dm3] 2L_22728607_SNP [dm6]	T	C	3.263e^-4	0.86	INTRON CG40006	TF binding site mE1_TFBS_cad
3L	15156986	3L_15156986_SNP [dm3] 3L_15163886_SNP [dm6]	G	C	3.271e^-4	0.86	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	10445592	2L_10445592_SNP [dm3] 2L_10445592_SNP [dm6]	C	T	3.272e^-4	0.86	SYNONYMOUS_CODING loh
2L	4649649	2L_4649649_SNP [dm3] 2L_4649649_SNP [dm6]	G	A	3.283e^-4	0.86	INTERGENIC
2L	6399507	2L_6399507_SNP [dm3] 2L_6399507_SNP [dm6]	A	G	3.287e^-4	0.86	INTRON CG42368
3R	7889355	3R_7889355_SNP [dm3] 3R_12063633_SNP [dm6]	A	G	3.294e^-4	0.86	UPSTREAM CG14740 INTERGENIC
3L	831295	3L_831295_SNP [dm3] 3L_831295_SNP [dm6]	G	A	3.297e^-4	0.86	UPSTREAM snoRNA:Me28S-A771 DOWNSTREAM snoRNA:Psi18S-110 INTRON CG13900	TF binding site mE1_TFBS_sens
3L	13741716	3L_13741716_SNP [dm3] 3L_13748616_SNP [dm6]	A	G	3.301e^-4	0.86	INTRON bru-3
2R	9967108	2R_9967108_SNP [dm3] 2R_14079603_SNP [dm6]	T	G	3.301e^-4	0.86	INTRON Prosap
2L	12619925	2L_12619925_DEL [dm3] 2L_12619925_DEL [dm6]	ATTGTA	A	3.303e^-4	0.86	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_cad
3R	22358126	3R_22358126_INS [dm3] 3R_26532404_INS [dm6]	T	TCT	3.308e^-4	0.86	UTR_5_PRIME plum
2L	22732809	2L_22732809_SNP [dm3] 2L_22840077_SNP [dm6]	A	G	3.313e^-4	0.86	INTERGENIC
X	16784877	X_16784877_SNP [dm3] X_16890844_SNP [dm6]	A	G	3.315e^-4	0.86	DOWNSTREAM CG13002 INTERGENIC
3R	8695552	3R_8695552_SNP [dm3] 3R_12869830_SNP [dm6]	A	T	3.315e^-4	0.86	INTERGENIC
2L	11518142	2L_11518142_SNP [dm3] 2L_11518142_SNP [dm6]	A	G	3.317e^-4	0.86	SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
2L	4786846	2L_4786846_SNP [dm3] 2L_4786846_SNP [dm6]	A	G	3.324e^-4	0.86	INTRON CG15630
3R	5475823	3R_5475823_SNP [dm3] 3R_9650101_SNP [dm6]	A	G	3.345e^-4	0.86	UTR_3_PRIME Dh44
3L	2659329	3L_2659329_SNP [dm3] 3L_2659329_SNP [dm6]	T	C	3.347e^-4	0.86	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12690187	2R_12690187_SNP [dm3] 2R_16802682_SNP [dm6]	G	A	3.349e^-4	0.86	INTERGENIC
2L	10117429	2L_10117429_SNP [dm3] 2L_10117429_SNP [dm6]	T	C	3.350e^-4	0.86	INTRON CG44153 & 1 other
X	2716674	X_2716674_SNP [dm3] X_2822641_SNP [dm6]	A	G	3.365e^-4	0.86	INTRON kirre
2L	1999519	2L_1999519_SNP [dm3] 2L_1999519_SNP [dm6]	G	A	3.366e^-4	0.86	UPSTREAM CR43464 INTRON CG33543
3L	10459190	3L_10459190_SNP [dm3] 3L_10466090_SNP [dm6]	C	A	3.369e^-4	0.86	UPSTREAM S-Lap3 INTRON S-Lap3
2L	6025492	2L_6025492_SNP [dm3] 2L_6025492_SNP [dm6]	G	C	3.373e^-4	0.86	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15715753	2R_15715753_SNP [dm3] 2R_19828248_SNP [dm6]	G	A	3.378e^-4	0.86	SYNONYMOUS_CODING Toll-7	TF binding site mE1_TFBS_sens
3R	8209806	3R_8209806_SNP [dm3] 3R_12384084_SNP [dm6]	C	T	3.382e^-4	0.86	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17337980	3R_17337980_SNP [dm3] 3R_21512258_SNP [dm6]	G	A	3.384e^-4	0.86	UTR_3_PRIME C15
2R	3344164	2R_3344164_SNP [dm3] 2R_7456659_SNP [dm6]	T	G	3.387e^-4	0.86	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9930067	2L_9930067_SNP [dm3] 2L_9930067_SNP [dm6]	A	G	3.392e^-4	0.86	UTR_3_PRIME CG42366 UPSTREAM CG42367 INTRON CG42366	TF binding site mE1_TFBS_HSA
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	3.405e^-4	0.86	INTRON hoe1
2L	5237409	2L_5237409_SNP [dm3] 2L_5237409_SNP [dm6]	G	T	3.414e^-4	0.86	UPSTREAM tkv INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20143226	3R_20143226_SNP [dm3] 3R_24317504_SNP [dm6]	C	A	3.420e^-4	0.86	SYNONYMOUS_CODING Nab2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12268192	X_12268192_SNP [dm3] X_12374159_SNP [dm6]	C	T	3.425e^-4	0.86	SYNONYMOUS_CODING CG2577
2R	18215244	2R_18215244_SNP [dm3] 2R_22327739_SNP [dm6]	G	A	3.427e^-4	0.86	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9966911	2R_9966911_SNP [dm3] 2R_14079406_SNP [dm6]	T	C	3.428e^-4	0.86	INTRON Prosap
3R	25171793	3R_25171793_SNP [dm3] 3R_29346071_SNP [dm6]	C	T	3.433e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10411170	3R_10411170_SNP [dm3] 3R_14585448_SNP [dm6]	A	G	3.436e^-4	0.86	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2R	3346327	2R_3346327_SNP [dm3] 2R_7458822_SNP [dm6]	A	G	3.438e^-4	0.86	START_GAINED Inos UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	12545469	2L_12545469_INS [dm3] 2L_12545469_INS [dm6]	A	AAACA	3.441e^-4	0.86	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	12624658	2L_12624658_SNP [dm3] 2L_12624658_SNP [dm6]	G	A	3.443e^-4	0.86	INTRON Ref2 & 1 other
3L	15474939	3L_15474939_SNP [dm3] 3L_15481839_SNP [dm6]	T	C	3.446e^-4	0.86	INTERGENIC
2L	5625363	2L_5625363_SNP [dm3] 2L_5625363_SNP [dm6]	C	T	3.449e^-4	0.86	DOWNSTREAM CG31646 INTERGENIC
X	4437888	X_4437888_SNP [dm3] X_4543855_SNP [dm6]	C	T	3.467e^-4	0.86	SYNONYMOUS_CODING CG3568 DOWNSTREAM Usf INTRON CR32773	TF binding site mE1_TFBS_sens
3L	10679208	3L_10679208_SNP [dm3] 3L_10686108_SNP [dm6]	C	T	3.470e^-4	0.86	SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12857137	2R_12857137_SNP [dm3] 2R_16969632_SNP [dm6]	G	A	3.472e^-4	0.86	EXON CR44377
2R	14884638	2R_14884638_SNP [dm3] 2R_18997133_SNP [dm6]	T	G	3.496e^-4	0.86	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad
2L	5288434	2L_5288434_SNP [dm3] 2L_5288434_SNP [dm6]	A	T	3.498e^-4	0.86	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25949464	3R_25949464_INS [dm3] 3R_30123742_INS [dm6]	T	TT	3.507e^-4	0.86	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
2L	22977725	2L_22977725_DEL [dm3] 2L_23084993_DEL [dm6]	GCCCGTTTG	G	3.517e^-4	0.86	INTERGENIC
3R	25192514	3R_25192514_SNP [dm3] 3R_29366792_SNP [dm6]	A	G	3.518e^-4	0.86	INTERGENIC
2L	1195454	2L_1195454_SNP [dm3] 2L_1195454_SNP [dm6]	G	A	3.521e^-4	0.86	INTRON CG5001
2L	22626075	2L_22626075_DEL [dm3] 2L_22733343_DEL [dm6]	AG	A	3.521e^-4	0.86	INTRON CG40006
2L	11428120	2L_11428120_SNP [dm3] 2L_11428120_SNP [dm6]	G	T	3.530e^-4	0.86	INTERGENIC
2R	18568858	2R_18568858_SNP [dm3] 2R_22681353_SNP [dm6]	C	T	3.532e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	10215782	2L_10215782_SNP [dm3] 2L_10215782_SNP [dm6]	G	C	3.534e^-4	0.86	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	18572042	2R_18572042_SNP [dm3] 2R_22684537_SNP [dm6]	G	A	3.534e^-4	0.86	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8796980	3R_8796980_SNP [dm3] 3R_12971258_SNP [dm6]	A	C	3.537e^-4	0.86	INTRON CG7381
2R	14222040	2R_14222040_INS [dm3] 2R_18334535_INS [dm6]	A	AAAATCACATA...	3.537e^-4	0.86	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8796124	3R_8796124_SNP [dm3] 3R_12970402_SNP [dm6]	T	C	3.539e^-4	0.86	SYNONYMOUS_CODING CG7381	TF binding site mE1_TFBS_chinmo
3L	12353994	3L_12353994_SNP [dm3] 3L_12360894_SNP [dm6]	C	T	3.541e^-4	0.86	INTERGENIC
2L	15075317	2L_15075317_SNP [dm3] 2L_15075317_SNP [dm6]	A	G	3.542e^-4	0.86	UTR_5_PRIME CG15270 DOWNSTREAM vas INTRON CG15270
2L	4516727	2L_4516727_SNP [dm3] 2L_4516727_SNP [dm6]	A	G	3.546e^-4	0.86	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7107144	2L_7107144_SNP [dm3] 2L_7107144_SNP [dm6]	G	A	3.551e^-4	0.86	SYNONYMOUS_CODING Pvf3
2L	2962072	2L_2962072_SNP [dm3] 2L_2962072_SNP [dm6]	G	A	3.558e^-4	0.86	INTRON Rbp9
3R	10789533	3R_10789533_SNP [dm3] 3R_14963811_SNP [dm6]	A	G	3.563e^-4	0.86	INTERGENIC
X	18973538	X_18973538_SNP [dm3] X_19079505_SNP [dm6]	G	C	3.567e^-4	0.86	DOWNSTREAM CG7406 INTERGENIC
3R	9867226	3R_9867226_SNP [dm3] 3R_14041504_SNP [dm6]	G	T	3.570e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12925914	2L_12925914_SNP [dm3] 2L_12925914_SNP [dm6]	T	A	3.572e^-4	0.86	DOWNSTREAM ACXA INTRON ACXE
2R	9346489	2R_9346489_SNP [dm3] 2R_13458984_SNP [dm6]	T	C	3.576e^-4	0.86	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3283270	2L_3283270_SNP [dm3] 2L_3283270_SNP [dm6]	T	A	3.580e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25192528	3R_25192528_SNP [dm3] 3R_29366806_SNP [dm6]	C	A	3.590e^-4	0.86	INTERGENIC
X	13695655	X_13695655_SNP [dm3] X_13801622_SNP [dm6]	A	G	3.594e^-4	0.86	INTRON inaE
3R	26101266	3R_26101266_SNP [dm3] 3R_30275544_SNP [dm6]	G	C	3.597e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	22626039	2L_22626039_SNP [dm3] 2L_22733307_SNP [dm6]	A	C	3.599e^-4	0.86	INTRON CG40006
X	21977680	X_21977680_SNP [dm3] X_22575844_SNP [dm6]	G	C	3.600e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10016318	2R_10016318_SNP [dm3] 2R_14128813_SNP [dm6]	C	T	3.606e^-4	0.86	INTRON Prosap
2R	6586082	2R_6586082_SNP [dm3] 2R_10698577_SNP [dm6]	C	T	3.609e^-4	0.86	INTRON stan
3R	13515020	3R_13515020_SNP [dm3] 3R_17689298_SNP [dm6]	C	T	3.621e^-4	0.86	UTR_3_PRIME osa	TF binding site BDTNP1_TFBS_dl
3L	8055652	3L_8055652_INS [dm3] 3L_8062552_INS [dm6]	A	AAGTCAA	3.628e^-4	0.86	INTERGENIC
3R	19675192	3R_19675192_SNP [dm3] 3R_23849470_SNP [dm6]	A	G	3.630e^-4	0.86	UTR_3_PRIME CG34355
3L	6693444	3L_6693444_SNP [dm3] 3L_6700344_SNP [dm6]	T	C	3.630e^-4	0.86	INTRON SP1173
3L	15420051	3L_15420051_SNP [dm3] 3L_15426951_SNP [dm6]	A	G	3.635e^-4	0.86	INTERGENIC
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	3.639e^-4	0.86	INTERGENIC
3L	14265067	3L_14265067_SNP [dm3] 3L_14271967_SNP [dm6]	A	G	3.644e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22346051	3R_22346051_SNP [dm3] 3R_26520329_SNP [dm6]	T	C	3.661e^-4	0.86	INTRON plum EXON CR45226
3R	20827501	3R_20827501_SNP [dm3] 3R_25001779_SNP [dm6]	T	G	3.670e^-4	0.86	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7795284	2R_7795284_SNP [dm3] 2R_11907779_SNP [dm6]	T	C	3.671e^-4	0.86	INTRON CG13183
3L	10462389	3L_10462389_SNP [dm3] 3L_10469289_SNP [dm6]	G	A	3.683e^-4	0.86	DOWNSTREAM S-Lap3 INTERGENIC
3L	4473398	3L_4473398_SNP [dm3] 3L_4473398_SNP [dm6]	A	C	3.695e^-4	0.86	NON_SYNONYMOUS_CODING CG11349 DOWNSTREAM CG32248
3R	8053557	3R_8053557_SNP [dm3] 3R_12227835_SNP [dm6]	C	T	3.695e^-4	0.86	INTERGENIC
3R	22613468	3R_22613468_SNP [dm3] 3R_26787746_SNP [dm6]	G	T	3.707e^-4	0.86	INTERGENIC
3R	22283643	3R_22283643_SNP [dm3] 3R_26457921_SNP [dm6]	A	G	3.710e^-4	0.86	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3L	8314617	3L_8314617_SNP [dm3] 3L_8321517_SNP [dm6]	A	C	3.710e^-4	0.86	INTRON CG13670
3R	22910224	3R_22910224_DEL [dm3] 3R_27084502_DEL [dm6]	CTTTTT	C	3.711e^-4	0.86	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
3L	5527386	3L_5527386_SNP [dm3] 3L_5534286_SNP [dm6]	C	G	3.722e^-4	0.86	UTR_3_PRIME CG13285 DOWNSTREAM CG13285
3L	9284789	3L_9284789_SNP [dm3] 3L_9291689_SNP [dm6]	A	G	3.736e^-4	0.86	INTERGENIC
2L	7501827	2L_7501827_SNP [dm3] 2L_7501827_SNP [dm6]	T	C	3.741e^-4	0.86	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3348368	2R_3348368_SNP [dm3] 2R_7460863_SNP [dm6]	A	T	3.751e^-4	0.86	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	23208507	3R_23208507_SNP [dm3] 3R_27382785_SNP [dm6]	G	A	3.753e^-4	0.86	INTRON side	TF binding site mE1_TFBS_chinmo
3R	13508315	3R_13508315_SNP [dm3] 3R_17682593_SNP [dm6]	T	C	3.754e^-4	0.86	UPSTREAM CG7655 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	12990232	2R_12990232_SNP [dm3] 2R_17102727_SNP [dm6]	G	A	3.788e^-4	0.86	UTR_5_PRIME CG30456 UPSTREAM CG30456	TF binding site mE1_TFBS_cad
3L	1752229	3L_1752229_SNP [dm3] 3L_1752229_SNP [dm6]	A	T	3.789e^-4	0.86	UTR_3_PRIME CG13921 DOWNSTREAM Cht2
X	14824312	X_14824312_SNP [dm3] X_14930279_SNP [dm6]	T	G	3.790e^-4	0.86	UPSTREAM Flo2 INTRON Flo2	TF binding site BDTNP1_TFBS_prd
2L	2946298	2L_2946298_SNP [dm3] 2L_2946298_SNP [dm6]	A	C	3.796e^-4	0.86	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	7863676	2L_7863676_SNP [dm3] 2L_7863676_SNP [dm6]	G	A	3.796e^-4	0.86	DOWNSTREAM Proc INTERGENIC
X	16902696	X_16902696_INS [dm3] X_17008663_INS [dm6]	C	CTC	3.797e^-4	0.86	INTRON CG45002
3R	2886005	3R_2886005_SNP [dm3] 3R_7060283_SNP [dm6]	A	G	3.802e^-4	0.86	UTR_3_PRIME dj UPSTREAM djl	regulatory region REDfly_CRMs
3R	8160719	3R_8160719_SNP [dm3] 3R_12334997_SNP [dm6]	A	G	3.805e^-4	0.86	UPSTREAM CR44941 INTERGENIC
2R	19982013	2R_19982013_SNP [dm3] 2R_24094490_SNP [dm6]	T	C	3.808e^-4	0.86	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11136753	2R_11136753_DEL [dm3] 2R_15249248_DEL [dm6]	CA	C	3.810e^-4	0.86	UTR_5_PRIME scb	TF binding site mE1_TFBS_cad
2L	4972831	2L_4972831_SNP [dm3] 2L_4972831_SNP [dm6]	C	G	3.810e^-4	0.86	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	4553368	X_4553368_SNP [dm3] X_4659335_SNP [dm6]	A	T	3.816e^-4	0.86	SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	9486843	2L_9486843_SNP [dm3] 2L_9486843_SNP [dm6]	T	G	3.822e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15467500	2R_15467500_SNP [dm3] 2R_19579995_SNP [dm6]	G	T	3.823e^-4	0.86	INTRON sm
X	21976865	X_21976865_SNP [dm3] X_22575029_SNP [dm6]	A	C	3.826e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22910222	3R_22910222_SNP [dm3] 3R_27084500_SNP [dm6]	T	G	3.829e^-4	0.86	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
2L	22640780	2L_22640780_SNP [dm3] 2L_22748048_SNP [dm6]	A	G	3.836e^-4	0.86	INTRON CG40006
2R	3344958	2R_3344958_INS [dm3] 2R_7457453_INS [dm6]	A	ATGATGATGATTGC...	3.840e^-4	0.86	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16893734	X_16893734_SNP [dm3] X_16999701_SNP [dm6]	G	A	3.842e^-4	0.86	INTRON CG45002
2R	16431954	2R_16431954_SNP [dm3] 2R_20544449_SNP [dm6]	C	G	3.843e^-4	0.86	INTERGENIC
3R	26174403	3R_26174403_SNP [dm3] 3R_30348681_SNP [dm6]	T	G	3.845e^-4	0.86	INTRON hdc
2L	9679118	2L_9679118_SNP [dm3] 2L_9679118_SNP [dm6]	G	A	3.849e^-4	0.86	INTERGENIC
3R	13180918	3R_13180918_SNP [dm3] 3R_17355196_SNP [dm6]	C	T	3.859e^-4	0.86	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	3.862e^-4	0.86	UPSTREAM hoe1 INTRON hoe1
3L	4175237	3L_4175237_SNP [dm3] 3L_4175237_SNP [dm6]	C	A	3.863e^-4	0.86	UTR_3_PRIME Teh4 INTRON CG18675
2R	7834712	2R_7834712_SNP [dm3] 2R_11947207_SNP [dm6]	T	C	3.869e^-4	0.86	INTRON CG13188
2R	17418305	2R_17418305_SNP [dm3] 2R_21530800_SNP [dm6]	A	C	3.872e^-4	0.86	DOWNSTREAM CR44725 INTRON Egfr	TF binding site BDTNP1_TFBS_twi
3L	10459167	3L_10459167_SNP [dm3] 3L_10466067_SNP [dm6]	G	A	3.872e^-4	0.86	UPSTREAM S-Lap3 INTRON S-Lap3
2R	18381157	2R_18381157_SNP [dm3] 2R_22493652_SNP [dm6]	T	C	3.884e^-4	0.86	SYNONYMOUS_CODING CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12238491	3R_12238491_SNP [dm3] 3R_16412769_SNP [dm6]	T	C	3.885e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	22527933	2L_22527933_SNP [dm3] 2L_22635201_SNP [dm6]	G	A	3.890e^-4	0.86	INTRON CG40006
2L	5637400	2L_5637400_SNP [dm3] 2L_5637400_SNP [dm6]	T	C	3.893e^-4	0.86	INTRON CG31646
2L	15065123	2L_15065123_SNP [dm3] 2L_15065123_SNP [dm6]	A	C	3.901e^-4	0.86	INTRON vas & 1 other
2L	7154453	2L_7154453_SNP [dm3] 2L_7154453_SNP [dm6]	G	T	3.905e^-4	0.86	INTRON Pvf3
3L	11117254	3L_11117254_SNP [dm3] 3L_11124154_SNP [dm6]	C	G	3.906e^-4	0.86	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9980896	3R_9980896_SNP [dm3] 3R_14155174_SNP [dm6]	A	G	3.907e^-4	0.86	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	3.909e^-4	0.86	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	5447943	X_5447943_SNP [dm3] X_5553910_SNP [dm6]	C	T	3.914e^-4	0.86	INTRON Vsx2
X	5447948	X_5447948_SNP [dm3] X_5553915_SNP [dm6]	C	T	3.914e^-4	0.86	INTRON Vsx2
2R	5563360	2R_5563360_SNP [dm3] 2R_9675855_SNP [dm6]	C	T	3.914e^-4	0.86	INTRON Mmp2
3R	16223452	3R_16223452_SNP [dm3] 3R_20397730_SNP [dm6]	G	A	3.916e^-4	0.86	INTRON Gfrl
3R	25202633	3R_25202633_SNP [dm3] 3R_29376911_SNP [dm6]	A	G	3.917e^-4	0.86	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9095668	2L_9095668_SNP [dm3] 2L_9095668_SNP [dm6]	C	A	3.917e^-4	0.86	INTERGENIC
2L	22666568	2L_22666568_SNP [dm3] 2L_22773836_SNP [dm6]	G	A	3.923e^-4	0.86	INTERGENIC
2L	14598521	2L_14598521_SNP [dm3] 2L_14598521_SNP [dm6]	T	G	3.925e^-4	0.86	UPSTREAM tRNA:P:35Ba DOWNSTREAM osp & 1 other INTERGENIC
2L	521483	2L_521483_SNP [dm3] 2L_521483_SNP [dm6]	T	A	3.925e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12168207	2R_12168207_DEL [dm3] 2R_16280702_DEL [dm6]	GG	G	3.927e^-4	0.86	UPSTREAM CG15705 DOWNSTREAM CG15704 & 1 other INTERGENIC
X	8553345	X_8553345_SNP [dm3] X_8659312_SNP [dm6]	A	T	3.930e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	13378656	3L_13378656_SNP [dm3] 3L_13385556_SNP [dm6]	T	A	3.935e^-4	0.86	NON_SYNONYMOUS_CODING CG14110 DOWNSTREAM CG10171	TF binding site mE1_TFBS_sens
3R	2831754	3R_2831754_SNP [dm3] 3R_7006032_SNP [dm6]	A	T	3.936e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17919868	3R_17919868_SNP [dm3] 3R_22094146_SNP [dm6]	A	T	3.939e^-4	0.86	INTRON CG5778	TF binding site mE1_TFBS_run
X	17074303	X_17074303_SNP [dm3] X_17180270_SNP [dm6]	T	A	3.942e^-4	0.86	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9371107	3L_9371107_INS [dm3] 3L_9378007_INS [dm6]	C	CC	3.946e^-4	0.86	UTR_3_PRIME Hsp67Ba UPSTREAM CR43481 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2876836	3L_2876836_SNP [dm3] 3L_2876836_SNP [dm6]	T	G	3.947e^-4	0.86	INTRON CG43444
2L	14913120	2L_14913120_SNP [dm3] 2L_14913120_SNP [dm6]	A	G	3.966e^-4	0.86	INTRON CG42313
2R	13928857	2R_13928857_SNP [dm3] 2R_18041352_SNP [dm6]	C	G	3.968e^-4	0.86	DOWNSTREAM CG5773 INTERGENIC
3L	17772851	3L_17772851_SNP [dm3] 3L_17779751_SNP [dm6]	T	A	3.973e^-4	0.86	INTERGENIC
2R	11925943	2R_11925943_SNP [dm3] 2R_16038438_SNP [dm6]	A	G	3.979e^-4	0.86	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22701799	2L_22701799_SNP [dm3] 2L_22809067_SNP [dm6]	G	A	3.985e^-4	0.86	INTERGENIC
2L	22882774	2L_22882774_SNP [dm3] 2L_22990042_SNP [dm6]	T	G	3.986e^-4	0.86	INTRON cta
3L	11117568	3L_11117568_SNP [dm3] 3L_11124468_SNP [dm6]	T	A	3.986e^-4	0.86	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	817143	3L_817143_SNP [dm3] 3L_817143_SNP [dm6]	G	T	3.997e^-4	0.86	INTERGENIC
2L	10352367	2L_10352367_SNP [dm3] 2L_10352367_SNP [dm6]	A	C	4.008e^-4	0.86	UPSTREAM CG34367 INTRON CG34367
2R	12032597	2R_12032597_SNP [dm3] 2R_16145092_SNP [dm6]	A	G	4.011e^-4	0.86	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
2L	5892418	2L_5892418_SNP [dm3] 2L_5892418_SNP [dm6]	G	T	4.011e^-4	0.86	UTR_3_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	5892499	2L_5892499_SNP [dm3] 2L_5892499_SNP [dm6]	C	G	4.011e^-4	0.86	UTR_3_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4972876	2L_4972876_SNP [dm3] 2L_4972876_SNP [dm6]	T	C	4.012e^-4	0.86	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14471574	3R_14471574_SNP [dm3] 3R_18645852_SNP [dm6]	G	C	4.014e^-4	0.86	NON_SYNONYMOUS_CODING qin
3R	25194224	3R_25194224_SNP [dm3] 3R_29368502_SNP [dm6]	A	C	4.015e^-4	0.86	UPSTREAM CG45546 INTERGENIC
2L	15400380	2L_15400380_SNP [dm3] 2L_15400380_SNP [dm6]	G	T	4.015e^-4	0.86	UPSTREAM CR44860 EXON CR45374
3R	4117336	3R_4117336_SNP [dm3] 3R_8291614_SNP [dm6]	C	G	4.017e^-4	0.86	SYNONYMOUS_CODING CG31464 UPSTREAM CG31463	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22678220	2L_22678220_SNP [dm3] 2L_22785488_SNP [dm6]	T	A	4.018e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	25202598	3R_25202598_DEL [dm3] 3R_29376876_DEL [dm6]	GTTCAAATAACTG...	G	4.025e^-4	0.86	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15071588	2L_15071588_SNP [dm3] 2L_15071588_SNP [dm6]	G	A	4.031e^-4	0.86	NON_SYNONYMOUS_CODING vas INTRON vas
3L	15476235	3L_15476235_SNP [dm3] 3L_15483135_SNP [dm6]	G	A	4.032e^-4	0.86	INTERGENIC
3R	25850600	3R_25850600_INS [dm3] 3R_30024878_INS [dm6]	T	TAT	4.035e^-4	0.86	INTRON Axn
3R	17576455	3R_17576455_SNP [dm3] 3R_21750733_SNP [dm6]	T	G	4.041e^-4	0.86	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2986743	2L_2986743_SNP [dm3] 2L_2986743_SNP [dm6]	A	C	4.047e^-4	0.86	INTRON Chd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2709522	2L_2709522_SNP [dm3] 2L_2709522_SNP [dm6]	A	T	4.051e^-4	0.86	INTRON CG31690
3R	11902808	3R_11902808_SNP [dm3] 3R_16077086_SNP [dm6]	C	T	4.053e^-4	0.86	UPSTREAM Mhcl INTRON Mhcl
2L	19639492	2L_19639492_SNP [dm3] 2L_19639492_SNP [dm6]	T	C	4.053e^-4	0.86	INTRON Lar
3L	10177172	3L_10177172_SNP [dm3] 3L_10184072_SNP [dm6]	G	T	4.057e^-4	0.86	INTRON dpr10
2L	2530617	2L_2530617_SNP [dm3] 2L_2530617_SNP [dm6]	G	A	4.059e^-4	0.86	INTERGENIC
3R	20812488	3R_20812488_SNP [dm3] 3R_24986766_SNP [dm6]	G	T	4.062e^-4	0.86	INTRON tnc
2R	13901810	2R_13901810_DEL [dm3] 2R_18014305_DEL [dm6]	TTGAAAAGCGTTG...	T	4.063e^-4	0.86	INTERGENIC
2R	17024770	2R_17024770_SNP [dm3] 2R_21137265_SNP [dm6]	T	C	4.063e^-4	0.86	INTRON Magi
2R	5036712	2R_5036712_DEL [dm3] 2R_9149207_DEL [dm6]	TA	T	4.066e^-4	0.86	DOWNSTREAM CG30344 INTRON CG30345
3R	26038506	3R_26038506_SNP [dm3] 3R_30212784_SNP [dm6]	T	C	4.076e^-4	0.86	UPSTREAM Cec2 DOWNSTREAM CecB & 1 other INTERGENIC
X	17652107	X_17652107_INS [dm3] X_17758074_INS [dm6]	G	GTACTTGG	4.077e^-4	0.86	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8553347	X_8553347_SNP [dm3] X_8659314_SNP [dm6]	G	A	4.079e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	4752709	2R_4752709_SNP [dm3] 2R_8865204_SNP [dm6]	A	T	4.079e^-4	0.86	INTRON RyR
3L	11439521	3L_11439521_SNP [dm3] 3L_11446421_SNP [dm6]	G	A	4.088e^-4	0.86	NON_SYNONYMOUS_CODING CG7557
X	17046561	X_17046561_SNP [dm3] X_17152528_SNP [dm6]	C	G	4.092e^-4	0.86	SYNONYMOUS_CODING xmas-1	TF binding site mE1_TFBS_HSA
2L	15094905	2L_15094905_SNP [dm3] 2L_15094905_SNP [dm6]	A	C	4.094e^-4	0.86	NON_SYNONYMOUS_CODING CG15270
2L	22596590	2L_22596590_SNP [dm3] 2L_22703858_SNP [dm6]	A	T	4.098e^-4	0.86	INTRON CG40006
3L	2894427	3L_2894427_SNP [dm3] 3L_2894427_SNP [dm6]	C	T	4.098e^-4	0.86	UPSTREAM Shab INTERGENIC
2R	18213434	2R_18213434_SNP [dm3] 2R_22325929_SNP [dm6]	C	T	4.107e^-4	0.86	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22626488	2L_22626488_SNP [dm3] 2L_22733756_SNP [dm6]	A	C	4.119e^-4	0.86	INTRON CG40006
2R	3350812	2R_3350812_SNP [dm3] 2R_7463307_SNP [dm6]	C	A	4.126e^-4	0.86	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14363566	2L_14363566_SNP [dm3] 2L_14363566_SNP [dm6]	C	A	4.130e^-4	0.86	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6098331	3L_6098331_SNP [dm3] 3L_6105231_SNP [dm6]	T	G	4.150e^-4	0.86	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4752689	2R_4752689_SNP [dm3] 2R_8865184_SNP [dm6]	A	T	4.152e^-4	0.86	INTRON RyR
2R	18197035	2R_18197035_SNP [dm3] 2R_22309530_SNP [dm6]	G	C	4.153e^-4	0.86	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25103685	3R_25103685_SNP [dm3] 3R_29277963_SNP [dm6]	C	T	4.154e^-4	0.86	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
2R	5512635	2R_5512635_SNP [dm3] 2R_9625130_SNP [dm6]	C	T	4.160e^-4	0.86	INTRON Mmp2
3R	24775240	3R_24775240_SNP [dm3] 3R_28949518_SNP [dm6]	A	T	4.163e^-4	0.86	INTRON CG14521
2R	13932250	2R_13932250_SNP [dm3] 2R_18044745_SNP [dm6]	A	G	4.168e^-4	0.86	SYNONYMOUS_CODING CG5770
2L	8372116	2L_8372116_SNP [dm3] 2L_8372116_SNP [dm6]	A	G	4.169e^-4	0.86	UPSTREAM CG17292 INTRON CG17292
3R	8695425	3R_8695425_SNP [dm3] 3R_12869703_SNP [dm6]	C	A	4.170e^-4	0.86	INTERGENIC
2L	3907600	2L_3907600_SNP [dm3] 2L_3907600_SNP [dm6]	G	A	4.170e^-4	0.86	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5617463	3L_5617463_SNP [dm3] 3L_5624363_SNP [dm6]	T	G	4.174e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4786789	2L_4786789_SNP [dm3] 2L_4786789_SNP [dm6]	A	G	4.175e^-4	0.86	INTRON CG15630
3L	6098335	3L_6098335_SNP [dm3] 3L_6105235_SNP [dm6]	C	T	4.176e^-4	0.86	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22186051	2L_22186051_SNP [dm3] 2L_22186051_SNP [dm6]	A	T	4.178e^-4	0.86	INTERGENIC
2L	22980280	2L_22980280_SNP [dm3] 2L_23087548_SNP [dm6]	A	T	4.185e^-4	0.86	INTERGENIC
3R	21124983	3R_21124983_SNP [dm3] 3R_25299261_SNP [dm6]	A	T	4.198e^-4	0.86	INTRON CG31288
2L	13249225	2L_13249225_SNP [dm3] 2L_13249225_SNP [dm6]	A	C	4.217e^-4	0.86	SYNONYMOUS_CODING CG16820
2L	13249231	2L_13249231_SNP [dm3] 2L_13249231_SNP [dm6]	G	T	4.217e^-4	0.86	SYNONYMOUS_CODING CG16820
3L	10459178	3L_10459178_SNP [dm3] 3L_10466078_SNP [dm6]	T	A	4.224e^-4	0.86	UPSTREAM S-Lap3 INTRON S-Lap3
3L	890857	3L_890857_SNP [dm3] 3L_890857_SNP [dm6]	T	C	4.227e^-4	0.86	SPLICE_SITE_REGION CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25959847	3R_25959847_SNP [dm3] 3R_30134125_SNP [dm6]	G	A	4.228e^-4	0.86	UTR_5_PRIME Tpi DOWNSTREAM AdoR INTRON Tpi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18150847	3L_18150847_SNP [dm3] 3L_18157747_SNP [dm6]	C	T	4.228e^-4	0.86	INTRON CG13699
3R	25202434	3R_25202434_SNP [dm3] 3R_29376712_SNP [dm6]	T	G	4.233e^-4	0.86	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21520095	3R_21520095_DEL [dm3] 3R_25694373_DEL [dm6]	TAATACAGT	T	4.234e^-4	0.86	INTERGENIC
2R	12000236	2R_12000236_SNP [dm3] 2R_16112731_SNP [dm6]	A	G	4.235e^-4	0.86	INTRON Asph
2R	12000239	2R_12000239_SNP [dm3] 2R_16112734_SNP [dm6]	G	T	4.235e^-4	0.86	INTRON Asph
2R	12000261	2R_12000261_SNP [dm3] 2R_16112756_SNP [dm6]	C	T	4.235e^-4	0.86	INTRON Asph
2L	17231499	2L_17231499_SNP [dm3] 2L_17231499_SNP [dm6]	A	G	4.246e^-4	0.86	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_twi
2R	12982307	2R_12982307_SNP [dm3] 2R_17094802_SNP [dm6]	C	G	4.248e^-4	0.86	SYNONYMOUS_CODING GstS1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12479002	2R_12479002_DEL [dm3] 2R_16591497_DEL [dm6]	AAA	A	4.249e^-4	0.86	INTRON CG8306	TF binding site mE1_TFBS_sens
3R	8233374	3R_8233374_SNP [dm3] 3R_12407652_SNP [dm6]	C	G	4.254e^-4	0.86	NON_SYNONYMOUS_CODING CG5167 UPSTREAM CG5196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5527374	3L_5527374_SNP [dm3] 3L_5534274_SNP [dm6]	C	G	4.264e^-4	0.86	UTR_3_PRIME CG13285 DOWNSTREAM CG13285
X	12095517	X_12095517_SNP [dm3] X_12201484_SNP [dm6]	C	G	4.265e^-4	0.86	INTRON Ten-a
3L	13741584	3L_13741584_SNP [dm3] 3L_13748484_SNP [dm6]	C	G	4.268e^-4	0.86	INTRON bru-3
3R	26196497	3R_26196497_SNP [dm3] 3R_30370775_SNP [dm6]	C	T	4.276e^-4	0.86	UTR_3_PRIME hdc
2L	10885589	2L_10885589_SNP [dm3] 2L_10885589_SNP [dm6]	A	G	4.281e^-4	0.86	UPSTREAM CR44490 INTERGENIC
2L	4648712	2L_4648712_SNP [dm3] 2L_4648712_SNP [dm6]	T	A	4.282e^-4	0.86	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4648720	2L_4648720_SNP [dm3] 2L_4648720_SNP [dm6]	G	A	4.282e^-4	0.86	DOWNSTREAM CG43798 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2082653	3L_2082653_SNP [dm3] 3L_2082653_SNP [dm6]	A	C	4.287e^-4	0.86	SYNONYMOUS_CODING sls INTRON sls
3R	8700510	3R_8700510_SNP [dm3] 3R_12874788_SNP [dm6]	G	A	4.288e^-4	0.86	INTERGENIC
3R	18748877	3R_18748877_SNP [dm3] 3R_22923155_SNP [dm6]	G	A	4.294e^-4	0.86	UPSTREAM CG6660 INTRON klg
3L	12351232	3L_12351232_SNP [dm3] 3L_12358132_SNP [dm6]	A	T	4.296e^-4	0.86	INTERGENIC
3R	27480479	3R_27480479_SNP [dm3] 3R_31654757_SNP [dm6]	C	G	4.302e^-4	0.86	INTRON kek6	TF binding site mE1_TFBS_chinmo
3R	22898178	3R_22898178_SNP [dm3] 3R_27072456_SNP [dm6]	C	G	4.306e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4174765	2R_4174765_SNP [dm3] 2R_8287260_SNP [dm6]	A	G	4.314e^-4	0.86	INTERGENIC
2L	22962805	2L_22962805_SNP [dm3] 2L_23070073_SNP [dm6]	C	T	4.332e^-4	0.86	EXON CR43242	TF binding site mE1_TFBS_cad
3L	11019659	3L_11019659_SNP [dm3] 3L_11026559_SNP [dm6]	A	G	4.336e^-4	0.86	SYNONYMOUS_CODING CG32079
3R	8695475	3R_8695475_SNP [dm3] 3R_12869753_SNP [dm6]	T	C	4.346e^-4	0.86	INTERGENIC
3L	2241083	3L_2241083_SNP [dm3] 3L_2241083_SNP [dm6]	A	C	4.350e^-4	0.86	INTRON ACXD	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13622564	X_13622564_SNP [dm3] X_13728531_SNP [dm6]	G	A	4.351e^-4	0.86	NON_SYNONYMOUS_CODING g
3R	15338632	3R_15338632_INS [dm3] 3R_19512910_INS [dm6]	T	TATT	4.351e^-4	0.86	INTRON Dys
2L	4923506	2L_4923506_SNP [dm3] 2L_4923506_SNP [dm6]	G	A	4.352e^-4	0.86	INTRON hoe1
2L	2545975	2L_2545975_SNP [dm3] 2L_2545975_SNP [dm6]	T	A	4.353e^-4	0.86	INTERGENIC
2R	17037206	2R_17037206_SNP [dm3] 2R_21149701_SNP [dm6]	T	C	4.355e^-4	0.86	SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5617472	3L_5617472_SNP [dm3] 3L_5624372_SNP [dm6]	T	G	4.355e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	19704963	2R_19704963_SNP [dm3] 2R_23817440_SNP [dm6]	T	G	4.359e^-4	0.86	INTRON CG4797
2R	8585475	2R_8585475_SNP [dm3] 2R_12697970_SNP [dm6]	G	A	4.373e^-4	0.86	INTERGENIC
3R	17920195	3R_17920195_SNP [dm3] 3R_22094473_SNP [dm6]	C	T	4.375e^-4	0.86	INTRON CG5778
3L	4175570	3L_4175570_SNP [dm3] 3L_4175570_SNP [dm6]	T	C	4.376e^-4	0.86	NON_SYNONYMOUS_CODING Teh4 INTRON CG18675
3R	23564681	3R_23564681_SNP [dm3] 3R_27738959_SNP [dm6]	G	A	4.385e^-4	0.86	INTRON Ets98B
3R	23848882	3R_23848882_SNP [dm3] 3R_28023160_SNP [dm6]	T	C	4.389e^-4	0.86	INTERGENIC
X	17046957	X_17046957_SNP [dm3] X_17152924_SNP [dm6]	A	T	4.391e^-4	0.86	SYNONYMOUS_CODING xmas-1
2R	3411061	2R_3411061_SNP [dm3] 2R_7523556_SNP [dm6]	C	T	4.394e^-4	0.86	NON_SYNONYMOUS_CODING Orc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9383446	3R_9383446_SNP [dm3] 3R_13557724_SNP [dm6]	T	A	4.396e^-4	0.86	INTERGENIC
2R	14951526	2R_14951526_SNP [dm3] 2R_19064021_SNP [dm6]	C	T	4.401e^-4	0.86	INTERGENIC
2L	13605939	2L_13605939_SNP [dm3] 2L_13605939_SNP [dm6]	G	A	4.402e^-4	0.86	INTRON kuz
2L	14363563	2L_14363563_SNP [dm3] 2L_14363563_SNP [dm6]	G	A	4.408e^-4	0.86	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11019615	3L_11019615_SNP [dm3] 3L_11026515_SNP [dm6]	C	A	4.420e^-4	0.86	NON_SYNONYMOUS_CODING CG32079
2R	17807294	2R_17807294_SNP [dm3] 2R_21919789_SNP [dm6]	T	G	4.421e^-4	0.86	INTRON Fili
3L	5617495	3L_5617495_INS [dm3] 3L_5624395_INS [dm6]	A	ACA	4.428e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16154797	2R_16154797_SNP [dm3] 2R_20267292_SNP [dm6]	C	T	4.432e^-4	0.86	SYNONYMOUS_CODING CG8908	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	22283663	3R_22283663_DEL [dm3] 3R_26457941_DEL [dm6]	GGA	G	4.442e^-4	0.86	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	21520664	3R_21520664_SNP [dm3] 3R_25694942_SNP [dm6]	T	A	4.455e^-4	0.86	INTERGENIC
2L	7580177	2L_7580177_SNP [dm3] 2L_7580177_SNP [dm6]	G	C	4.457e^-4	0.86	INTERGENIC
2L	793525	2L_793525_SNP [dm3] 2L_793525_SNP [dm6]	C	T	4.460e^-4	0.86	INTERGENIC
X	3462662	X_3462662_INS [dm3] X_3568629_INS [dm6]	A	ACA	4.460e^-4	0.86	UTR_5_PRIME CG32791 UPSTREAM ppk8 INTRON ppk8
3R	9870351	3R_9870351_SNP [dm3] 3R_14044629_SNP [dm6]	T	A	4.465e^-4	0.86	UPSTREAM tRNA:S2b:88A INTERGENIC
3L	7923595	3L_7923595_SNP [dm3] 3L_7930495_SNP [dm6]	C	T	4.473e^-4	0.86	SYNONYMOUS_CODING syd
2R	20221527	2R_20221527_SNP [dm3] 2R_24334004_SNP [dm6]	A	T	4.481e^-4	0.86	UTR_5_PRIME slbo DOWNSTREAM CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15172572	3L_15172572_SNP [dm3] 3L_15179472_SNP [dm6]	G	A	4.484e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5941438	3L_5941438_SNP [dm3] 3L_5948338_SNP [dm6]	T	C	4.490e^-4	0.86	INTRON CG33993
3L	11298068	3L_11298068_SNP [dm3] 3L_11304968_SNP [dm6]	C	A	4.493e^-4	0.86	INTERGENIC
3L	11439533	3L_11439533_SNP [dm3] 3L_11446433_SNP [dm6]	T	G	4.496e^-4	0.86	UTR_3_PRIME CG7557
X	21977033	X_21977033_DEL [dm3] X_22575197_DEL [dm6]	CACCGAT	C	4.497e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	10440976	3R_10440976_SNP [dm3] 3R_14615254_SNP [dm6]	T	C	4.499e^-4	0.86	INTRON CG14853
2R	9346573	2R_9346573_SNP [dm3] 2R_13459068_SNP [dm6]	C	T	4.502e^-4	0.86	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12019309	2R_12019309_SNP [dm3] 2R_16131804_SNP [dm6]	C	T	4.509e^-4	0.86	SYNONYMOUS_CODING spin	TF binding site mE1_TFBS_cad
3R	10411101	3R_10411101_SNP [dm3] 3R_14585379_SNP [dm6]	G	A	4.511e^-4	0.86	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2L	7483448	2L_7483448_SNP [dm3] 2L_7483448_SNP [dm6]	A	G	4.514e^-4	0.86	INTRON Ziz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7894385	3R_7894385_SNP [dm3] 3R_12068663_SNP [dm6]	T	G	4.515e^-4	0.86	UTR_3_PRIME CG14741
2R	18433239	2R_18433239_SNP [dm3] 2R_22545734_SNP [dm6]	G	C	4.518e^-4	0.86	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7824558	2R_7824558_SNP [dm3] 2R_11937053_SNP [dm6]	A	G	4.520e^-4	0.86	INTERGENIC
2R	12856721	2R_12856721_SNP [dm3] 2R_16969216_SNP [dm6]	A	C	4.521e^-4	0.86	UPSTREAM CR44377 INTERGENIC
X	21977028	X_21977028_DEL [dm3] X_22575192_DEL [dm6]	GCCT	G	4.525e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9967074	2R_9967074_SNP [dm3] 2R_14079569_SNP [dm6]	G	T	4.526e^-4	0.86	INTRON Prosap
3R	21331514	3R_21331514_SNP [dm3] 3R_25505792_SNP [dm6]	A	G	4.527e^-4	0.86	SYNONYMOUS_CODING CG5107 UPSTREAM CG5111
X	12268408	X_12268408_SNP [dm3] X_12374375_SNP [dm6]	A	G	4.529e^-4	0.86	UTR_3_PRIME CG2577
2L	8391993	2L_8391993_SNP [dm3] 2L_8391993_SNP [dm6]	C	T	4.541e^-4	0.86	SYNONYMOUS_CODING CG42820 DOWNSTREAM Acp29AB
3L	5103838	3L_5103838_SNP [dm3] 3L_5103838_SNP [dm6]	T	G	4.541e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18564290	2R_18564290_SNP [dm3] 2R_22676785_SNP [dm6]	G	C	4.542e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	12100623	2L_12100623_SNP [dm3] 2L_12100623_SNP [dm6]	A	C	4.549e^-4	0.86	UTR_3_PRIME Ced-12 DOWNSTREAM Patsas
3L	1261533	3L_1261533_SNP [dm3] 3L_1261533_SNP [dm6]	T	C	4.561e^-4	0.86	INTRON CG9134
2L	4924894	2L_4924894_SNP [dm3] 2L_4924894_SNP [dm6]	A	G	4.563e^-4	0.86	INTRON hoe1
3R	17066921	3R_17066921_SNP [dm3] 3R_21241199_SNP [dm6]	A	G	4.565e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs
3L	20003037	3L_20003037_SNP [dm3] 3L_20009937_SNP [dm6]	T	G	4.575e^-4	0.86	NON_SYNONYMOUS_CODING kug	TF binding site mE1_TFBS_sens
X	16888055	X_16888055_SNP [dm3] X_16994022_SNP [dm6]	C	T	4.575e^-4	0.86	INTRON CG45002
3L	13796913	3L_13796913_SNP [dm3] 3L_13803813_SNP [dm6]	T	C	4.583e^-4	0.86	UPSTREAM bru-3 INTERGENIC
2L	10467058	2L_10467058_SNP [dm3] 2L_10467058_SNP [dm6]	C	T	4.585e^-4	0.86	INTRON RluA-1
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	4.586e^-4	0.86	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6586120	2R_6586120_SNP [dm3] 2R_10698615_SNP [dm6]	A	G	4.594e^-4	0.86	INTRON stan
2L	11860150	2L_11860150_SNP [dm3] 2L_11860150_SNP [dm6]	G	T	4.595e^-4	0.86	INTRON Pde1c
2R	9933853	2R_9933853_SNP [dm3] 2R_14046348_SNP [dm6]	G	A	4.601e^-4	0.86	INTRON mam
2R	12699014	2R_12699014_SNP [dm3] 2R_16811509_SNP [dm6]	T	C	4.602e^-4	0.86	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
X	6689346	X_6689346_INS [dm3] X_6795313_INS [dm6]	G	GG	4.611e^-4	0.86	INTRON C3G	TF binding site mE1_TFBS_Kr
2L	7441533	2L_7441533_SNP [dm3] 2L_7441533_SNP [dm6]	C	T	4.612e^-4	0.86	UTR_5_PRIME CG5973 INTRON CG5973
2L	19634482	2L_19634482_SNP [dm3] 2L_19634482_SNP [dm6]	G	A	4.626e^-4	0.86	INTRON Lar
2L	6138904	2L_6138904_SNP [dm3] 2L_6138904_SNP [dm6]	T	A	4.630e^-4	0.86	UPSTREAM CG13991 EXON CR44824
2L	21358920	2L_21358920_SNP [dm3] 2L_21358920_SNP [dm6]	C	A	4.632e^-4	0.86	DOWNSTREAM Tsp39D INTERGENIC	transposable element FlyBase
2L	6138758	2L_6138758_SNP [dm3] 2L_6138758_SNP [dm6]	A	C	4.633e^-4	0.86	UPSTREAM CG13991 DOWNSTREAM CR44824 INTERGENIC
2R	15334543	2R_15334543_SNP [dm3] 2R_19447038_SNP [dm6]	C	T	4.638e^-4	0.86	UPSTREAM EloC DOWNSTREAM betaTub56D INTERGENIC
3R	14746434	3R_14746434_SNP [dm3] 3R_18920712_SNP [dm6]	G	C	4.640e^-4	0.86	NON_SYNONYMOUS_CODING Xrp1 INTRON Xrp1	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	22867970	3R_22867970_SNP [dm3] 3R_27042248_SNP [dm6]	C	T	4.641e^-4	0.86	INTRON RYa-R
2R	18537845	2R_18537845_SNP [dm3] 2R_22650340_SNP [dm6]	T	C	4.646e^-4	0.86	UPSTREAM nsr & 1 other INTERGENIC	transposable element FlyBase
3L	2649718	3L_2649718_SNP [dm3] 3L_2649718_SNP [dm6]	A	G	4.647e^-4	0.86	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3R	22283636	3R_22283636_SNP [dm3] 3R_26457914_SNP [dm6]	G	A	4.652e^-4	0.86	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	12319803	3R_12319803_SNP [dm3] 3R_16494081_SNP [dm6]	C	A	4.655e^-4	0.86	INTRON Cad89D
3R	9682638	3R_9682638_SNP [dm3] 3R_13856916_SNP [dm6]	T	C	4.663e^-4	0.86	INTERGENIC
3R	5312017	3R_5312017_SNP [dm3] 3R_9486295_SNP [dm6]	C	A	4.667e^-4	0.86	INTRON CG16779
2L	22626168	2L_22626168_SNP [dm3] 2L_22733436_SNP [dm6]	G	T	4.668e^-4	0.86	INTRON CG40006
3R	22261273	3R_22261273_SNP [dm3] 3R_26435551_SNP [dm6]	T	A	4.685e^-4	0.86	INTERGENIC
3R	17066924	3R_17066924_INS [dm3] 3R_21241202_INS [dm6]	C	CCG	4.689e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs
2L	5115146	2L_5115146_SNP [dm3] 2L_5115146_SNP [dm6]	G	A	4.690e^-4	0.86	INTRON Msp300
2R	16126749	2R_16126749_SNP [dm3] 2R_20239244_SNP [dm6]	T	G	4.692e^-4	0.86	SYNONYMOUS_CODING CG13869 UPSTREAM Efhc1.2 DOWNSTREAM CG11099
3R	6538760	3R_6538760_SNP [dm3] 3R_10713038_SNP [dm6]	T	G	4.692e^-4	0.86	INTERGENIC
3L	11118421	3L_11118421_SNP [dm3] 3L_11125321_SNP [dm6]	C	T	4.693e^-4	0.86	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	14636923	2R_14636923_SNP [dm3] 2R_18749418_SNP [dm6]	T	C	4.694e^-4	0.86	INTRON Hs3st-A
3L	9281398	3L_9281398_SNP [dm3] 3L_9288298_SNP [dm6]	C	T	4.696e^-4	0.86	UTR_3_PRIME GluRIB
2L	8845238	2L_8845238_SNP [dm3] 2L_8845238_SNP [dm6]	C	T	4.697e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12568158	2R_12568158_DEL [dm3] 2R_16680653_DEL [dm6]	TG	T	4.698e^-4	0.86	INTRON CG30463
2L	9486612	2L_9486612_SNP [dm3] 2L_9486612_SNP [dm6]	C	G	4.704e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5493805	3L_5493805_SNP [dm3] 3L_5500705_SNP [dm6]	G	C	4.714e^-4	0.86	DOWNSTREAM CR44518 & 1 other INTERGENIC

By genomic position
Variant impact
Gene name

Cuticul_n_C22 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results