DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.916e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07606
In_3R_P	0.09446
In_3R_K	0.00105

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.1775	0.0751
In_3R_K	13.5535	0.0011

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2765 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.608e^-9	0.005	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	6.780e^-9	0.006	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.823e^-8	0.011	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	2.379e^-8	0.011	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	2.745e^-7	0.09	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	2.893e^-7	0.09	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	3.841e^-7	0.103	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	7.226e^-7	0.134	DOWNSTREAM CR44941 INTERGENIC
3R	17213783	3R_17213783_SNP [dm3] 3R_21388061_SNP [dm6]	G	A	7.508e^-7	0.134	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	7.680e^-7	0.134	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	7.870e^-7	0.134	INTRON ush	regulatory region REDfly_CRMs
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.049e^-6	0.164	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	17213941	3R_17213941_SNP [dm3] 3R_21388219_SNP [dm6]	T	A	1.348e^-6	0.194	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17214297	3R_17214297_SNP [dm3] 3R_21388575_SNP [dm6]	G	T	2.081e^-6	0.251	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	2.125e^-6	0.251	INTRON timeout & 2 others
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	2.138e^-6	0.251	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	2.611e^-6	0.262	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.779e^-6	0.262	DOWNSTREAM CG18109 INTERGENIC
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	2.836e^-6	0.262	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	2.952e^-6	0.262	INTRON timeout & 2 others
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	3.035e^-6	0.262	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	3.113e^-6	0.262	INTRON beat-Vc
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	3.247e^-6	0.262	INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	3.391e^-6	0.262	INTRON Octbeta3R
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	3.561e^-6	0.262	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8560942	3R_8560942_MNP [dm3] 3R_12735220_MNP [dm6]	AAG	TTT	4.088e^-6	0.262	INTERGENIC
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	4.137e^-6	0.262	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	4.342e^-6	0.262	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	4.497e^-6	0.262	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	4.620e^-6	0.262	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	4.699e^-6	0.262	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	4.865e^-6	0.262	INTRON CG18769
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	4.906e^-6	0.262	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	4.906e^-6	0.262	INTRON timeout & 2 others
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	4.961e^-6	0.262	INTERGENIC
2L	528267	2L_528267_SNP [dm3] 2L_528267_SNP [dm6]	T	A	5.200e^-6	0.262	INTRON ush	regulatory region REDfly_CRMs
2L	496826	2L_496826_SNP [dm3] 2L_496826_SNP [dm6]	G	C	5.373e^-6	0.262	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	5.548e^-6	0.262	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	5.762e^-6	0.262	INTERGENIC
3L	11450272	3L_11450272_SNP [dm3] 3L_11457172_SNP [dm6]	G	A	6.187e^-6	0.262	NON_SYNONYMOUS_CODING CG12289
2L	5812993	2L_5812993_SNP [dm3] 2L_5812993_SNP [dm6]	A	C	6.196e^-6	0.262	INTERGENIC
3R	8771965	3R_8771965_SNP [dm3] 3R_12946243_SNP [dm6]	C	A	6.246e^-6	0.262	INTERGENIC
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	6.369e^-6	0.262	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6546240	3R_6546240_SNP [dm3] 3R_10720518_SNP [dm6]	T	C	6.463e^-6	0.262	INTERGENIC
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	6.647e^-6	0.262	INTERGENIC
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	6.935e^-6	0.262	INTERGENIC
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	7.032e^-6	0.262	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14506517	3R_14506517_SNP [dm3] 3R_18680795_SNP [dm6]	T	A	7.247e^-6	0.262	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3R	17213975	3R_17213975_SNP [dm3] 3R_21388253_SNP [dm6]	T	A	7.301e^-6	0.262	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	7.402e^-6	0.262	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	7.416e^-6	0.262	INTRON Octbeta2R
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	7.586e^-6	0.262	INTERGENIC
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	7.609e^-6	0.262	INTERGENIC
3R	14503317	3R_14503317_SNP [dm3] 3R_18677595_SNP [dm6]	G	T	7.635e^-6	0.262	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	7.908e^-6	0.262	INTERGENIC
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	8.057e^-6	0.262	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	528185	2L_528185_SNP [dm3] 2L_528185_SNP [dm6]	G	A	8.293e^-6	0.262	INTRON ush	regulatory region REDfly_CRMs
3L	9870489	3L_9870489_SNP [dm3] 3L_9877389_SNP [dm6]	G	C	8.358e^-6	0.262	DOWNSTREAM CR45406 INTERGENIC
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	8.514e^-6	0.262	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3L	11450266	3L_11450266_SNP [dm3] 3L_11457166_SNP [dm6]	A	G	8.624e^-6	0.262	NON_SYNONYMOUS_CODING CG12289
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	8.679e^-6	0.262	INTERGENIC
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	8.826e^-6	0.262	INTRON timeout & 2 others
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	8.851e^-6	0.262	EXON CR44942	TF binding site BDTNP1_TFBS_twi
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	9.181e^-6	0.262	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	9.182e^-6	0.262	INTRON timeout & 2 others
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	9.236e^-6	0.262	INTRON kar	TF binding site mE1_TFBS_cad
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	9.402e^-6	0.263	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9870418	3L_9870418_SNP [dm3] 3L_9877318_SNP [dm6]	A	G	9.666e^-6	0.264	DOWNSTREAM CR45406 INTERGENIC
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	9.717e^-6	0.264	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11450270	3L_11450270_SNP [dm3] 3L_11457170_SNP [dm6]	G	C	1.023e^-5	0.274	NON_SYNONYMOUS_CODING CG12289
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.037e^-5	0.274	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6279074	3L_6279074_SNP [dm3] 3L_6285974_SNP [dm6]	G	A	1.089e^-5	0.284	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.112e^-5	0.285	UPSTREAM hoe1 INTRON hoe1
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	1.125e^-5	0.285	INTERGENIC
3R	10504684	3R_10504684_SNP [dm3] 3R_14678962_SNP [dm6]	G	C	1.146e^-5	0.287	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	1.164e^-5	0.287	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	8977070	3R_8977070_DEL [dm3] 3R_13151348_DEL [dm6]	AGACA	A	1.234e^-5	0.299	INTRON timeout & 2 others
3L	4109655	3L_4109655_SNP [dm3] 3L_4109655_SNP [dm6]	G	T	1.245e^-5	0.299	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13328042	3R_13328042_SNP [dm3] 3R_17502320_SNP [dm6]	T	G	1.273e^-5	0.302	INTRON Dscam3
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	1.352e^-5	0.314	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5685823	X_5685823_SNP [dm3] X_5791790_SNP [dm6]	C	T	1.367e^-5	0.314	UPSTREAM CG12239 & 1 other DOWNSTREAM mir-4963 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	1.396e^-5	0.314	INTERGENIC
3L	7389364	3L_7389364_SNP [dm3] 3L_7396264_SNP [dm6]	G	T	1.396e^-5	0.314	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19044403	2R_19044403_SNP [dm3] 2R_23156880_SNP [dm6]	C	T	1.405e^-5	0.314	DOWNSTREAM CG13545 INTRON CG9899
2R	16381548	2R_16381548_SNP [dm3] 2R_20494043_SNP [dm6]	C	T	1.437e^-5	0.317	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8560964	3R_8560964_SNP [dm3] 3R_12735242_SNP [dm6]	C	T	1.506e^-5	0.328	INTERGENIC
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	1.523e^-5	0.328	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	1.557e^-5	0.33	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	1.589e^-5	0.33	INTRON CG18769
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	1.594e^-5	0.33	INTERGENIC
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	1.603e^-5	0.33	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	1.712e^-5	0.345	INTRON timeout & 2 others
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	1.716e^-5	0.345	UPSTREAM CR45374 INTERGENIC
3R	8560960	3R_8560960_SNP [dm3] 3R_12735238_SNP [dm6]	A	T	1.731e^-5	0.345	INTERGENIC
2L	13108885	2L_13108885_SNP [dm3] 2L_13108885_SNP [dm6]	T	G	1.818e^-5	0.359	INTRON CG5142
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	1.856e^-5	0.362	INTRON CG14877
3L	11450245	3L_11450245_SNP [dm3] 3L_11457145_SNP [dm6]	T	C	1.898e^-5	0.362	UTR_3_PRIME CG12289
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	1.900e^-5	0.362	INTERGENIC
3R	8771941	3R_8771941_SNP [dm3] 3R_12946219_SNP [dm6]	G	A	1.944e^-5	0.362	INTERGENIC
3R	8394727	3R_8394727_SNP [dm3] 3R_12569005_SNP [dm6]	C	T	1.968e^-5	0.362	INTRON Octbeta2R
3L	9607339	3L_9607339_SNP [dm3] 3L_9614239_SNP [dm6]	A	C	1.990e^-5	0.362	UPSTREAM LanB2 DOWNSTREAM CG3280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	18365880	3L_18365880_DEL [dm3] 3L_18372780_DEL [dm6]	GAATTTCTG	A	2.033e^-5	0.362	INTERGENIC
3R	8511738	3R_8511738_SNP [dm3] 3R_12686016_SNP [dm6]	C	T	2.039e^-5	0.362	INTRON kar	TF binding site mE1_TFBS_cad
3R	7633296	3R_7633296_SNP [dm3] 3R_11807574_SNP [dm6]	G	T	2.106e^-5	0.362	INTRON ClC-a
3R	6547438	3R_6547438_SNP [dm3] 3R_10721716_SNP [dm6]	T	A	2.110e^-5	0.362	INTERGENIC
3L	11450251	3L_11450251_SNP [dm3] 3L_11457151_SNP [dm6]	C	T	2.184e^-5	0.362	UTR_3_PRIME CG12289
2R	14410942	2R_14410942_SNP [dm3] 2R_18523437_SNP [dm6]	C	G	2.197e^-5	0.362	UTR_3_PRIME CG43066 INTRON CG43066
3L	9731081	3L_9731081_SNP [dm3] 3L_9737981_SNP [dm6]	G	A	2.197e^-5	0.362	INTRON CG42268
3R	6528690	3R_6528690_SNP [dm3] 3R_10702968_SNP [dm6]	A	G	2.224e^-5	0.362	SYNONYMOUS_CODING pug DOWNSTREAM CG31391	TF binding site mE1_TFBS_chinmo
3R	25078873	3R_25078873_SNP [dm3] 3R_29253151_SNP [dm6]	C	T	2.229e^-5	0.362	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	2.230e^-5	0.362	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
3R	12747646	3R_12747646_SNP [dm3] 3R_16921924_SNP [dm6]	G	A	2.238e^-5	0.362	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8560968	3R_8560968_MNP [dm3] 3R_12735246_MNP [dm6]	GTTT	AAAA	2.240e^-5	0.362	INTERGENIC
3R	17250836	3R_17250836_DEL [dm3] 3R_21425114_DEL [dm6]	TT	A	2.256e^-5	0.362	INTRON lbl
3R	6547403	3R_6547403_SNP [dm3] 3R_10721681_SNP [dm6]	T	A	2.282e^-5	0.362	INTERGENIC
2L	14918236	2L_14918236_SNP [dm3] 2L_14918236_SNP [dm6]	T	A	2.302e^-5	0.362	INTRON CG42313
3R	8740503	3R_8740503_SNP [dm3] 3R_12914781_SNP [dm6]	G	A	2.308e^-5	0.362	INTERGENIC
3R	6548034	3R_6548034_SNP [dm3] 3R_10722312_SNP [dm6]	T	C	2.321e^-5	0.362	INTERGENIC
2R	19236942	2R_19236942_SNP [dm3] 2R_23349419_SNP [dm6]	G	C	2.324e^-5	0.362	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10889376	2R_10889376_SNP [dm3] 2R_15001871_SNP [dm6]	A	G	2.326e^-5	0.362	INTERGENIC
3R	21330403	3R_21330403_INS [dm3] 3R_25504681_INS [dm6]	T	TT	2.336e^-5	0.362	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6879975	X_6879975_SNP [dm3] X_6985942_SNP [dm6]	A	G	2.359e^-5	0.363	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	20911399	3R_20911399_INS [dm3] 3R_25085677_INS [dm6]	C	CC	2.399e^-5	0.366	DOWNSTREAM fd96Ca INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12747590	3R_12747590_SNP [dm3] 3R_16921868_SNP [dm6]	A	T	2.464e^-5	0.371	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6547412	3R_6547412_SNP [dm3] 3R_10721690_SNP [dm6]	T	C	2.489e^-5	0.371	INTERGENIC
3R	8511590	3R_8511590_SNP [dm3] 3R_12685868_SNP [dm6]	T	C	2.503e^-5	0.371	INTRON kar	TF binding site mE1_TFBS_cad
3R	14297246	3R_14297246_SNP [dm3] 3R_18471524_SNP [dm6]	G	A	2.535e^-5	0.371	INTRON fru
3R	13837491	3R_13837491_SNP [dm3] 3R_18011769_SNP [dm6]	T	G	2.610e^-5	0.371	INTRON cpo
3R	12757958	3R_12757958_SNP [dm3] 3R_16932236_SNP [dm6]	G	C	2.632e^-5	0.371	UPSTREAM Abd-B INTRON Abd-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12748721	3R_12748721_SNP [dm3] 3R_16922999_SNP [dm6]	G	C	2.649e^-5	0.371	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	8508217	X_8508217_SNP [dm3] X_8614184_SNP [dm6]	A	G	2.651e^-5	0.371	INTERGENIC
3L	2487143	3L_2487143_SNP [dm3] 3L_2487143_SNP [dm6]	A	T	2.653e^-5	0.371	INTRON CG45186
3L	4114059	3L_4114059_SNP [dm3] 3L_4114059_SNP [dm6]	G	A	2.687e^-5	0.371	UTR_3_PRIME Ack DOWNSTREAM Chd64
3R	13103210	3R_13103210_SNP [dm3] 3R_17277488_SNP [dm6]	A	G	2.689e^-5	0.371	INTERGENIC
3L	5361645	3L_5361645_SNP [dm3] 3L_5368545_SNP [dm6]	A	T	2.689e^-5	0.371	UPSTREAM CG10635 & 1 other INTERGENIC
2R	12974546	2R_12974546_SNP [dm3] 2R_17087041_SNP [dm6]	A	T	2.714e^-5	0.371	INTRON CG30460	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	8201781	X_8201781_SNP [dm3] X_8307748_SNP [dm6]	G	A	2.748e^-5	0.371	INTRON nAChRalpha3
3L	9306038	3L_9306038_SNP [dm3] 3L_9312938_SNP [dm6]	A	C	2.771e^-5	0.371	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5147758	3R_5147758_SNP [dm3] 3R_9322036_SNP [dm6]	G	A	2.796e^-5	0.371	NON_SYNONYMOUS_CODING HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11443307	2L_11443307_SNP [dm3] 2L_11443307_SNP [dm6]	G	A	2.812e^-5	0.371	INTRON salm
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	2.855e^-5	0.371	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	2.868e^-5	0.371	INTRON nuf	TF binding site mE1_TFBS_bab1
X	17620613	X_17620613_SNP [dm3] X_17726580_SNP [dm6]	T	C	2.883e^-5	0.371	INTRON CG42684
3R	23500234	3R_23500234_SNP [dm3] 3R_27674512_SNP [dm6]	C	T	2.889e^-5	0.371	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	2.897e^-5	0.371	INTRON ush	regulatory region REDfly_CRMs
3R	11639782	3R_11639782_SNP [dm3] 3R_15814060_SNP [dm6]	C	T	2.898e^-5	0.371	INTRON alpha-Man-IIb
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	2.904e^-5	0.371	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	4478083	2L_4478083_SNP [dm3] 2L_4478083_SNP [dm6]	T	C	2.927e^-5	0.371	UTR_3_PRIME dp
3R	5434412	3R_5434412_SNP [dm3] 3R_9608690_SNP [dm6]	G	T	3.028e^-5	0.381	INTRON CG8312	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	3.200e^-5	0.396	INTRON CG7985
2R	3348458	2R_3348458_SNP [dm3] 2R_7460953_SNP [dm6]	T	C	3.205e^-5	0.396	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	6544144	3R_6544144_SNP [dm3] 3R_10718422_SNP [dm6]	G	A	3.213e^-5	0.396	INTERGENIC	TF binding site mE1_TFBS_inv
X	12144773	X_12144773_SNP [dm3] X_12250740_SNP [dm6]	A	G	3.236e^-5	0.397	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8164413	3R_8164413_SNP [dm3] 3R_12338691_SNP [dm6]	A	C	3.280e^-5	0.399	INTRON CR44941
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	3.373e^-5	0.407	INTERGENIC
2L	11441890	2L_11441890_DEL [dm3] 2L_11441890_DEL [dm6]	TGGATTT	T	3.388e^-5	0.407	INTRON salm	TF binding site mE1_TFBS_inv
2R	4206222	2R_4206222_SNP [dm3] 2R_8318717_SNP [dm6]	A	C	3.437e^-5	0.411	INTERGENIC
2R	3348498	2R_3348498_SNP [dm3] 2R_7460993_SNP [dm6]	A	C	3.530e^-5	0.414	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	3.530e^-5	0.414	UPSTREAM CR45374 INTERGENIC
3L	5888680	3L_5888680_DEL [dm3] 3L_5895580_DEL [dm6]	AAGTTTATA	A	3.532e^-5	0.414	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6564637	3R_6564637_SNP [dm3] 3R_10738915_SNP [dm6]	A	C	3.588e^-5	0.417	INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	12325242	3R_12325242_SNP [dm3] 3R_16499520_SNP [dm6]	G	A	3.627e^-5	0.417	UPSTREAM Gr89a INTRON decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14919072	2L_14919072_SNP [dm3] 2L_14919072_SNP [dm6]	C	T	3.628e^-5	0.417	INTRON CG42313
2L	7938720	2L_7938720_SNP [dm3] 2L_7938720_SNP [dm6]	C	T	3.656e^-5	0.418	INTRON Snoo
2R	7437420	2R_7437420_DEL [dm3] 2R_11549915_DEL [dm6]	CTTTT	C	3.708e^-5	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	3.730e^-5	0.421	INTRON Octbeta2R
3L	9731033	3L_9731033_SNP [dm3] 3L_9737933_SNP [dm6]	C	T	3.778e^-5	0.424	INTRON CG42268
3R	8347006	3R_8347006_SNP [dm3] 3R_12521284_SNP [dm6]	T	A	3.817e^-5	0.426	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
3R	24790026	3R_24790026_SNP [dm3] 3R_28964304_SNP [dm6]	C	T	3.862e^-5	0.427	INTRON CG14521
3R	8561205	3R_8561205_SNP [dm3] 3R_12735483_SNP [dm6]	A	T	3.873e^-5	0.427	INTERGENIC
2L	7080281	2L_7080281_SNP [dm3] 2L_7080281_SNP [dm6]	G	C	3.928e^-5	0.427	UPSTREAM CR44611 INTRON Pvf2
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	3.965e^-5	0.427	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4722235	2L_4722235_SNP [dm3] 2L_4722235_SNP [dm6]	T	A	3.968e^-5	0.427	UTR_3_PRIME CG34351
3R	6545300	3R_6545300_SNP [dm3] 3R_10719578_SNP [dm6]	C	T	3.996e^-5	0.427	INTERGENIC
2R	5022135	2R_5022135_SNP [dm3] 2R_9134630_SNP [dm6]	C	T	4.001e^-5	0.427	SYNONYMOUS_CODING Hydr1 DOWNSTREAM alc	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6540118	3R_6540118_SNP [dm3] 3R_10714396_SNP [dm6]	T	C	4.004e^-5	0.427	UPSTREAM CG4073 INTERGENIC
3R	8798003	3R_8798003_SNP [dm3] 3R_12972281_SNP [dm6]	A	T	4.110e^-5	0.436	UPSTREAM CG7381 INTRON CG7381
3L	363931	3L_363931_SNP [dm3] 3L_363931_SNP [dm6]	T	C	4.156e^-5	0.437	SYNONYMOUS_CODING CG1233	TF binding site mE1_TFBS_sens
3R	6547465	3R_6547465_SNP [dm3] 3R_10721743_SNP [dm6]	T	C	4.167e^-5	0.437	INTERGENIC
3R	9793675	3R_9793675_SNP [dm3] 3R_13967953_SNP [dm6]	T	C	4.211e^-5	0.439	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
2L	581350	2L_581350_SNP [dm3] 2L_581350_SNP [dm6]	C	A	4.239e^-5	0.439	INTERGENIC
3L	12896929	3L_12896929_SNP [dm3] 3L_12903829_SNP [dm6]	A	T	4.395e^-5	0.452	UPSTREAM CG32117 INTERGENIC
3R	6574424	3R_6574424_SNP [dm3] 3R_10748702_SNP [dm6]	C	A	4.414e^-5	0.452	INTRON TkR86C
3R	8217231	3R_8217231_SNP [dm3] 3R_12391509_SNP [dm6]	C	T	4.470e^-5	0.454	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	4.522e^-5	0.454	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8793902	3R_8793902_SNP [dm3] 3R_12968180_SNP [dm6]	G	C	4.560e^-5	0.454	UTR_3_PRIME CG7381 UPSTREAM CG14384 & 1 other
3R	8976262	3R_8976262_SNP [dm3] 3R_13150540_SNP [dm6]	A	T	4.567e^-5	0.454	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	6545163	3R_6545163_INS [dm3] 3R_10719441_INS [dm6]	G	TTGACCTTT	4.585e^-5	0.454	INTERGENIC
3R	8358015	3R_8358015_SNP [dm3] 3R_12532293_SNP [dm6]	C	A	4.594e^-5	0.454	INTRON Octbeta3R
3R	12746790	3R_12746790_SNP [dm3] 3R_16921068_SNP [dm6]	G	A	4.633e^-5	0.454	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	6547416	3R_6547416_SNP [dm3] 3R_10721694_SNP [dm6]	T	C	4.651e^-5	0.454	INTERGENIC
X	6879976	X_6879976_SNP [dm3] X_6985943_SNP [dm6]	T	G	4.667e^-5	0.454	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	6564654	3R_6564654_SNP [dm3] 3R_10738932_SNP [dm6]	C	A	4.673e^-5	0.454	SPLICE_SITE_REGION TkR86C INTRON TkR86C	TF binding site mE1_TFBS_cad
3R	16853778	3R_16853778_SNP [dm3] 3R_21028056_SNP [dm6]	C	G	4.706e^-5	0.455	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	14342349	3R_14342349_SNP [dm3] 3R_18516627_SNP [dm6]	G	A	4.793e^-5	0.46	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	5685931	X_5685931_SNP [dm3] X_5791898_SNP [dm6]	G	A	4.818e^-5	0.46	UPSTREAM CG12239 & 1 other DOWNSTREAM CG15767 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9174258	3R_9174258_SNP [dm3] 3R_13348536_SNP [dm6]	A	T	4.855e^-5	0.46	INTERGENIC
2L	7788965	2L_7788965_SNP [dm3] 2L_7788965_SNP [dm6]	A	T	4.920e^-5	0.46	INTRON CG7149
2R	20222349	2R_20222349_SNP [dm3] 2R_24334826_SNP [dm6]	C	G	4.929e^-5	0.46	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	5897180	3L_5897180_SNP [dm3] 3L_5904080_SNP [dm6]	A	C	4.935e^-5	0.46	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
X	8631631	X_8631631_SNP [dm3] X_8737598_SNP [dm6]	C	T	4.942e^-5	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	5685940	X_5685940_SNP [dm3] X_5791907_SNP [dm6]	G	C	5.005e^-5	0.46	UPSTREAM CG12239 & 1 other DOWNSTREAM CG15767 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	5.057e^-5	0.46	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
3R	6545219	3R_6545219_SNP [dm3] 3R_10719497_SNP [dm6]	C	A	5.066e^-5	0.46	INTERGENIC
2R	3344122	2R_3344122_SNP [dm3] 2R_7456617_SNP [dm6]	A	G	5.076e^-5	0.46	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8366548	3R_8366548_SNP [dm3] 3R_12540826_SNP [dm6]	G	A	5.078e^-5	0.46	INTRON Octbeta3R
3R	8361127	3R_8361127_SNP [dm3] 3R_12535405_SNP [dm6]	A	G	5.168e^-5	0.46	INTRON Octbeta3R
3R	13103308	3R_13103308_DEL [dm3] 3R_17277586_DEL [dm6]	TTCCTA	T	5.194e^-5	0.46	INTERGENIC
2L	10522790	2L_10522790_SNP [dm3] 2L_10522790_SNP [dm6]	C	G	5.204e^-5	0.46	INTERGENIC
2L	19251790	2L_19251790_SNP [dm3] 2L_19251790_SNP [dm6]	A	G	5.213e^-5	0.46	INTERGENIC
3L	3945182	3L_3945182_SNP [dm3] 3L_3945182_SNP [dm6]	G	A	5.223e^-5	0.46	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	9594498	3L_9594498_SNP [dm3] 3L_9601398_SNP [dm6]	G	C	5.227e^-5	0.46	UPSTREAM CG3306 & 1 other INTERGENIC
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	5.255e^-5	0.46	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	6545224	3R_6545224_SNP [dm3] 3R_10719502_SNP [dm6]	C	A	5.275e^-5	0.46	INTERGENIC
3R	6542668	3R_6542668_SNP [dm3] 3R_10716946_SNP [dm6]	T	C	5.278e^-5	0.46	INTERGENIC
2L	15585853	2L_15585853_SNP [dm3] 2L_15585853_SNP [dm6]	G	A	5.293e^-5	0.46	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18064574	3R_18064574_DEL [dm3] 3R_22238852_DEL [dm6]	CC	G	5.331e^-5	0.461	INTRON SKIP
3R	8387086	3R_8387086_SNP [dm3] 3R_12561364_SNP [dm6]	T	C	5.367e^-5	0.462	UTR_5_PRIME Octbeta2R UPSTREAM Octbeta2R
X	7575952	X_7575952_INS [dm3] X_7681919_INS [dm6]	G	TATAAAT	5.391e^-5	0.462	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	6547488	3R_6547488_SNP [dm3] 3R_10721766_SNP [dm6]	C	T	5.447e^-5	0.463	INTERGENIC
3R	14299706	3R_14299706_SNP [dm3] 3R_18473984_SNP [dm6]	T	G	5.474e^-5	0.463	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11450255	3L_11450255_SNP [dm3] 3L_11457155_SNP [dm6]	T	A	5.487e^-5	0.463	UTR_3_PRIME CG12289
3R	5682230	3R_5682230_INS [dm3] 3R_9856508_INS [dm6]	C	CCTATG	5.506e^-5	0.463	INTRON Teh1
3R	13045210	3R_13045210_SNP [dm3] 3R_17219488_SNP [dm6]	T	A	5.542e^-5	0.464	INTRON CG31262
2R	15172123	2R_15172123_SNP [dm3] 2R_19284618_SNP [dm6]	T	C	5.645e^-5	0.471	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	5.687e^-5	0.471	UTR_3_PRIME bol
3R	5306425	3R_5306425_SNP [dm3] 3R_9480703_SNP [dm6]	G	C	5.731e^-5	0.471	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9275721	3R_9275721_SNP [dm3] 3R_13449999_SNP [dm6]	G	A	5.742e^-5	0.471	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	6587608	3R_6587608_SNP [dm3] 3R_10761886_SNP [dm6]	A	G	5.779e^-5	0.471	NON_SYNONYMOUS_CODING Cap-H2 UTR_5_PRIME Cap-H2 UPSTREAM MED7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8428977	3R_8428977_SNP [dm3] 3R_12603255_SNP [dm6]	T	A	5.780e^-5	0.471	INTERGENIC
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	5.798e^-5	0.471	DOWNSTREAM TkR86C INTERGENIC
3R	13103287	3R_13103287_SNP [dm3] 3R_17277565_SNP [dm6]	C	T	5.824e^-5	0.471	INTERGENIC
2L	10939798	2L_10939798_SNP [dm3] 2L_10939798_SNP [dm6]	T	C	5.867e^-5	0.472	INTRON dpr2
3R	10504662	3R_10504662_SNP [dm3] 3R_14678940_SNP [dm6]	G	A	5.909e^-5	0.474	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	8292611	X_8292611_SNP [dm3] X_8398578_SNP [dm6]	C	G	5.934e^-5	0.474	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6240591	3L_6240591_SNP [dm3] 3L_6247491_SNP [dm6]	A	G	6.027e^-5	0.477	SYNONYMOUS_CODING Best2
2L	11442729	2L_11442729_SNP [dm3] 2L_11442729_SNP [dm6]	C	T	6.054e^-5	0.477	INTRON salm
2L	18950964	2L_18950964_SNP [dm3] 2L_18950964_SNP [dm6]	G	A	6.078e^-5	0.477	UTR_3_PRIME CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8173388	2R_8173388_SNP [dm3] 2R_12285883_SNP [dm6]	T	C	6.105e^-5	0.477	UPSTREAM CG42700 INTRON CG42700
2R	3344119	2R_3344119_SNP [dm3] 2R_7456614_SNP [dm6]	G	A	6.139e^-5	0.477	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	11442681	2L_11442681_SNP [dm3] 2L_11442681_SNP [dm6]	A	T	6.145e^-5	0.477	INTRON salm
X	18372514	X_18372514_SNP [dm3] X_18478481_SNP [dm6]	G	A	6.154e^-5	0.477	INTRON CG32547
3R	6545558	3R_6545558_SNP [dm3] 3R_10719836_SNP [dm6]	A	C	6.226e^-5	0.477	INTERGENIC
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	6.241e^-5	0.477	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16893968	3L_16893968_SNP [dm3] 3L_16900868_SNP [dm6]	T	C	6.250e^-5	0.477	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9458974	3R_9458974_SNP [dm3] 3R_13633252_SNP [dm6]	C	T	6.291e^-5	0.477	SYNONYMOUS_CODING CG10841
3R	8215112	3R_8215112_SNP [dm3] 3R_12389390_SNP [dm6]	G	A	6.306e^-5	0.477	DOWNSTREAM CG33098 INTRON CG34402
3R	6545786	3R_6545786_SNP [dm3] 3R_10720064_SNP [dm6]	A	T	6.380e^-5	0.477	INTERGENIC
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	6.418e^-5	0.477	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
2R	8292108	2R_8292108_SNP [dm3] 2R_12404603_SNP [dm6]	C	T	6.438e^-5	0.477	UTR_3_PRIME Cpr49Ae	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18332213	2L_18332213_SNP [dm3] 2L_18332213_SNP [dm6]	A	G	6.440e^-5	0.477	INTRON Fas3	TF binding site BDTNP1_TFBS_da
3R	6570391	3R_6570391_SNP [dm3] 3R_10744669_SNP [dm6]	T	A	6.442e^-5	0.477	INTRON TkR86C
2R	14852717	2R_14852717_SNP [dm3] 2R_18965212_SNP [dm6]	G	T	6.455e^-5	0.477	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	25079056	3R_25079056_SNP [dm3] 3R_29253334_SNP [dm6]	G	A	6.461e^-5	0.477	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	9594502	3L_9594502_DEL [dm3] 3L_9601402_DEL [dm6]	ATCTTG	A	6.508e^-5	0.479	UPSTREAM CG3306 & 1 other INTERGENIC
2R	18072350	2R_18072350_SNP [dm3] 2R_22184845_SNP [dm6]	C	T	6.532e^-5	0.479	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7074433	2L_7074433_SNP [dm3] 2L_7074433_SNP [dm6]	T	A	6.623e^-5	0.483	INTRON Pvf2
3L	5897178	3L_5897178_SNP [dm3] 3L_5904078_SNP [dm6]	T	G	6.644e^-5	0.483	UPSTREAM CG32413 DOWNSTREAM CG10486 INTERGENIC
3R	8776947	3R_8776947_DEL [dm3] 3R_12951225_DEL [dm6]	GCGGACAACTCGGGGATGCA...	AAAAA	6.966e^-5	0.501	INTRON grsm
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	6.973e^-5	0.501	INTRON CR44941
2L	7074435	2L_7074435_SNP [dm3] 2L_7074435_SNP [dm6]	A	C	6.979e^-5	0.501	INTRON Pvf2
3R	11600371	3R_11600371_SNP [dm3] 3R_15774649_SNP [dm6]	G	T	6.994e^-5	0.501	NON_SYNONYMOUS_CODING CG4525 DOWNSTREAM CR45207 EXON CR45206
3R	19920507	3R_19920507_SNP [dm3] 3R_24094785_SNP [dm6]	G	A	7.086e^-5	0.502	INTRON 4EHP
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	7.114e^-5	0.502	INTERGENIC
3R	8768381	3R_8768381_SNP [dm3] 3R_12942659_SNP [dm6]	T	A	7.169e^-5	0.502	INTERGENIC
3R	14506991	3R_14506991_SNP [dm3] 3R_18681269_SNP [dm6]	T	C	7.218e^-5	0.502	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
2L	14944137	2L_14944137_SNP [dm3] 2L_14944137_SNP [dm6]	T	C	7.221e^-5	0.502	INTRON CG42313
3L	9870847	3L_9870847_SNP [dm3] 3L_9877747_SNP [dm6]	A	G	7.317e^-5	0.502	INTERGENIC
3R	8151411	3R_8151411_SNP [dm3] 3R_12325689_SNP [dm6]	A	G	7.323e^-5	0.502	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	6140856	2L_6140856_SNP [dm3] 2L_6140856_SNP [dm6]	G	T	7.342e^-5	0.502	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7768136	3R_7768136_SNP [dm3] 3R_11942414_SNP [dm6]	A	G	7.375e^-5	0.502	INTRON Cad87A
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	7.381e^-5	0.502	INTERGENIC
3L	10177300	3L_10177300_SNP [dm3] 3L_10184200_SNP [dm6]	G	C	7.416e^-5	0.502	INTRON dpr10
3R	20850903	3R_20850903_SNP [dm3] 3R_25025181_SNP [dm6]	C	A	7.423e^-5	0.502	UPSTREAM Hr96 & 1 other DOWNSTREAM beta4GalT7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	7.453e^-5	0.502	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9094890	3L_9094890_SNP [dm3] 3L_9101790_SNP [dm6]	C	T	7.532e^-5	0.502	UTR_3_PRIME bol
2L	4722389	2L_4722389_INS [dm3] 2L_4722389_INS [dm6]	A	ATACT	7.586e^-5	0.502	UTR_3_PRIME CG34351
3R	9423421	3R_9423421_DEL [dm3] 3R_13597699_DEL [dm6]	ATGAAGGATATTTGATATTT...	A	7.629e^-5	0.502	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6539192	3R_6539192_SNP [dm3] 3R_10713470_SNP [dm6]	C	T	7.633e^-5	0.502	INTERGENIC
2R	12533956	2R_12533956_SNP [dm3] 2R_16646451_SNP [dm6]	C	G	7.648e^-5	0.502	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20850901	3R_20850901_SNP [dm3] 3R_25025179_SNP [dm6]	C	T	7.656e^-5	0.502	UPSTREAM Hr96 & 1 other DOWNSTREAM beta4GalT7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	8741405	3R_8741405_SNP [dm3] 3R_12915683_SNP [dm6]	A	G	7.674e^-5	0.502	UPSTREAM beat-Vb INTERGENIC
3L	412029	3L_412029_SNP [dm3] 3L_412029_SNP [dm6]	C	A	7.680e^-5	0.502	INTERGENIC
3R	14299637	3R_14299637_SNP [dm3] 3R_18473915_SNP [dm6]	A	T	7.727e^-5	0.502	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8196402	2R_8196402_SNP [dm3] 2R_12308897_SNP [dm6]	A	C	7.795e^-5	0.502	INTRON CG17739	TF binding site mE1_TFBS_chinmo
2R	14023044	2R_14023044_SNP [dm3] 2R_18135539_SNP [dm6]	C	G	7.808e^-5	0.502	UTR_5_PRIME Pcl UPSTREAM Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15293045	3L_15293045_SNP [dm3] 3L_15299945_SNP [dm6]	C	T	7.866e^-5	0.502	SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
3R	24848600	3R_24848600_SNP [dm3] 3R_29022878_SNP [dm6]	T	G	7.898e^-5	0.502	UPSTREAM CR44264 EXON CR45567
3R	10504675	3R_10504675_SNP [dm3] 3R_14678953_SNP [dm6]	C	G	7.902e^-5	0.502	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8978886	3R_8978886_SNP [dm3] 3R_13153164_SNP [dm6]	C	T	7.985e^-5	0.502	INTRON timeout & 2 others
3R	8976346	3R_8976346_SNP [dm3] 3R_13150624_SNP [dm6]	C	T	8.001e^-5	0.502	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	9337605	3L_9337605_SNP [dm3] 3L_9344505_SNP [dm6]	A	C	8.092e^-5	0.502	NON_SYNONYMOUS_CODING PGRP-LC INTRON PGRP-LC
2R	3344555	2R_3344555_SNP [dm3] 2R_7457050_SNP [dm6]	T	C	8.139e^-5	0.502	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	12746999	3R_12746999_SNP [dm3] 3R_16921277_SNP [dm6]	C	A	8.142e^-5	0.502	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	11450225	3L_11450225_SNP [dm3] 3L_11457125_SNP [dm6]	T	G	8.156e^-5	0.502	UTR_3_PRIME CG12289
2R	7406959	2R_7406959_SNP [dm3] 2R_11519454_SNP [dm6]	G	A	8.159e^-5	0.502	INTERGENIC
2R	14020809	2R_14020809_SNP [dm3] 2R_18133304_SNP [dm6]	A	T	8.163e^-5	0.502	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	7406943	2R_7406943_SNP [dm3] 2R_11519438_SNP [dm6]	T	C	8.255e^-5	0.502	INTERGENIC
X	6878559	X_6878559_INS [dm3] X_6984526_INS [dm6]	A	ACTATACTTAAA...	8.257e^-5	0.502	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14068696	2L_14068696_SNP [dm3] 2L_14068696_SNP [dm6]	A	T	8.274e^-5	0.502	INTRON nAChRalpha5
3R	8785260	3R_8785260_SNP [dm3] 3R_12959538_SNP [dm6]	G	T	8.283e^-5	0.502	SYNONYMOUS_CODING grsm	TF binding site mE1_TFBS_cad
3R	13045213	3R_13045213_SNP [dm3] 3R_17219491_SNP [dm6]	A	T	8.297e^-5	0.502	INTRON CG31262
2R	8197015	2R_8197015_SNP [dm3] 2R_12309510_SNP [dm6]	T	A	8.345e^-5	0.502	NON_SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5422478	3R_5422478_SNP [dm3] 3R_9596756_SNP [dm6]	T	A	8.363e^-5	0.502	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10824537	3R_10824537_SNP [dm3] 3R_14998815_SNP [dm6]	G	A	8.378e^-5	0.502	INTERGENIC
2L	5963065	2L_5963065_SNP [dm3] 2L_5963065_SNP [dm6]	C	T	8.389e^-5	0.502	DOWNSTREAM psd INTERGENIC	TF binding site mE1_TFBS_cad
3R	8779105	3R_8779105_SNP [dm3] 3R_12953383_SNP [dm6]	A	T	8.465e^-5	0.502	INTRON grsm
3R	25121877	3R_25121877_SNP [dm3] 3R_29296155_SNP [dm6]	G	A	8.479e^-5	0.502	SYNONYMOUS_CODING CG14506
3R	5303127	3R_5303127_INS [dm3] 3R_9477405_INS [dm6]	A	AA	8.486e^-5	0.502	INTRON CG16779
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	8.505e^-5	0.502	INTERGENIC
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	8.542e^-5	0.502	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26151744	3R_26151744_SNP [dm3] 3R_30326022_SNP [dm6]	A	T	8.560e^-5	0.502	INTRON hdc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20850896	3R_20850896_SNP [dm3] 3R_25025174_SNP [dm6]	C	T	8.566e^-5	0.502	UPSTREAM Hr96 & 1 other DOWNSTREAM beta4GalT7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	8455689	3R_8455689_SNP [dm3] 3R_12629967_SNP [dm6]	C	T	8.584e^-5	0.502	UTR_3_PRIME Snx3 UPSTREAM Not10	TF binding site BDTNP1_TFBS_dl
2L	18946044	2L_18946044_SNP [dm3] 2L_18946044_SNP [dm6]	G	A	8.593e^-5	0.502	UPSTREAM CR42848 EXON CR44740	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10212048	3R_10212048_SNP [dm3] 3R_14386326_SNP [dm6]	T	A	8.593e^-5	0.502	INTERGENIC
3R	12741405	3R_12741405_SNP [dm3] 3R_16915683_SNP [dm6]	C	A	8.593e^-5	0.502	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6539922	3R_6539922_SNP [dm3] 3R_10714200_SNP [dm6]	T	C	8.659e^-5	0.502	UPSTREAM CG4073 INTERGENIC
3R	8773063	3R_8773063_DEL [dm3] 3R_12947341_DEL [dm6]	ACGCCTCACAGCCGGCTTAA...	A	8.714e^-5	0.502	INTERGENIC
3R	20260076	3R_20260076_SNP [dm3] 3R_24434354_SNP [dm6]	T	C	8.733e^-5	0.502	INTRON nAChRalpha1
2R	3262376	2R_3262376_SNP [dm3] 2R_7374871_SNP [dm6]	G	C	8.735e^-5	0.502	INTRON Dscam1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	18551917	2R_18551917_SNP [dm3] 2R_22664412_SNP [dm6]	A	C	8.763e^-5	0.502	UTR_3_PRIME CG4250
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	8.778e^-5	0.502	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11600741	3R_11600741_SNP [dm3] 3R_15775019_SNP [dm6]	C	A	8.803e^-5	0.502	UPSTREAM CR45206 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_inv
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	8.814e^-5	0.502	INTERGENIC
2L	18948405	2L_18948405_SNP [dm3] 2L_18948405_SNP [dm6]	T	A	8.818e^-5	0.502	UPSTREAM CG10428 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	8.820e^-5	0.502	UPSTREAM CG6527 INTRON A2bp1
X	7964388	X_7964388_INS [dm3] X_8070355_INS [dm6]	G	GAG	8.923e^-5	0.502	UTR_3_PRIME Upf2 DOWNSTREAM mys
3R	9041794	3R_9041794_SNP [dm3] 3R_13216072_SNP [dm6]	C	T	8.924e^-5	0.502	INTERGENIC
2R	13105920	2R_13105920_INS [dm3] 2R_17218415_INS [dm6]	T	TT	9.002e^-5	0.502	INTRON mbl
3R	14501160	3R_14501160_SNP [dm3] 3R_18675438_SNP [dm6]	A	G	9.015e^-5	0.502	SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705 DOWNSTREAM CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6594384	3R_6594384_SNP [dm3] 3R_10768662_SNP [dm6]	T	G	9.040e^-5	0.502	NON_SYNONYMOUS_CODING CG45076 UPSTREAM TfIIFbeta DOWNSTREAM CG45076	TF binding site mE1_TFBS_chinmo
2R	3348324	2R_3348324_SNP [dm3] 2R_7460819_SNP [dm6]	T	C	9.063e^-5	0.502	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	12747456	3R_12747456_SNP [dm3] 3R_16921734_SNP [dm6]	T	G	9.156e^-5	0.502	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6546630	3R_6546630_SNP [dm3] 3R_10720908_SNP [dm6]	G	A	9.185e^-5	0.502	INTERGENIC
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	9.186e^-5	0.502	INTRON beat-Vc
2L	18983663	2L_18983663_INS [dm3] 2L_18983663_INS [dm6]	C	CAGTATAATTCGCTTAGCTG...	9.215e^-5	0.502	INTRON Swip-1	TF binding site mE1_TFBS_HSA
3R	8773216	3R_8773216_SNP [dm3] 3R_12947494_SNP [dm6]	G	A	9.223e^-5	0.502	INTERGENIC
3R	25121876	3R_25121876_SNP [dm3] 3R_29296154_SNP [dm6]	G	A	9.223e^-5	0.502	SYNONYMOUS_CODING CG14506
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	9.250e^-5	0.502	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	3348420	2R_3348420_SNP [dm3] 2R_7460915_SNP [dm6]	A	T	9.252e^-5	0.502	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	12743853	3R_12743853_SNP [dm3] 3R_16918131_SNP [dm6]	A	T	9.266e^-5	0.502	INTRON iab-8
3L	5361957	3L_5361957_DEL [dm3] 3L_5368857_DEL [dm6]	ATTAAACTGAGTATTTCGAA...	A	9.268e^-5	0.502	UPSTREAM CG10635 & 1 other INTERGENIC
3R	12745657	3R_12745657_SNP [dm3] 3R_16919935_SNP [dm6]	A	G	9.280e^-5	0.502	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	13187364	3L_13187364_DEL [dm3] 3L_13194264_DEL [dm6]	ATTTT	A	9.282e^-5	0.502	INTERGENIC
3R	8374182	3R_8374182_SNP [dm3] 3R_12548460_SNP [dm6]	C	T	9.307e^-5	0.502	UPSTREAM Octbeta3R INTERGENIC
3R	8724424	3R_8724424_SNP [dm3] 3R_12898702_SNP [dm6]	G	T	9.378e^-5	0.502	INTERGENIC
3R	18842826	3R_18842826_SNP [dm3] 3R_23017104_SNP [dm6]	A	T	9.437e^-5	0.502	INTERGENIC
2L	746315	2L_746315_SNP [dm3] 2L_746315_SNP [dm6]	A	G	9.443e^-5	0.502	INTERGENIC
3R	23237682	3R_23237682_SNP [dm3] 3R_27411960_SNP [dm6]	T	C	9.454e^-5	0.502	INTRON side
3L	10177335	3L_10177335_SNP [dm3] 3L_10184235_SNP [dm6]	G	A	9.473e^-5	0.502	INTRON dpr10
2L	14918590	2L_14918590_SNP [dm3] 2L_14918590_SNP [dm6]	T	C	9.486e^-5	0.502	INTRON CG42313
3L	5898303	3L_5898303_SNP [dm3] 3L_5905203_SNP [dm6]	C	T	9.503e^-5	0.502	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
2L	11442866	2L_11442866_SNP [dm3] 2L_11442866_SNP [dm6]	T	C	9.505e^-5	0.502	INTRON salm
3R	8799967	3R_8799967_SNP [dm3] 3R_12974245_SNP [dm6]	C	T	9.511e^-5	0.502	INTRON CG7381
2L	15760166	2L_15760166_SNP [dm3] 2L_15760166_SNP [dm6]	G	T	9.535e^-5	0.502	INTRON Gli	TF binding site mE1_TFBS_cad
3L	18606031	3L_18606031_SNP [dm3] 3L_18612931_SNP [dm6]	G	A	9.621e^-5	0.502	SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
3R	14693422	3R_14693422_SNP [dm3] 3R_18867700_SNP [dm6]	C	T	9.643e^-5	0.502	INTERGENIC
2L	15531442	2L_15531442_SNP [dm3] 2L_15531442_SNP [dm6]	T	C	9.657e^-5	0.502	INTERGENIC
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	9.738e^-5	0.502	INTERGENIC
3R	8495201	3R_8495201_SNP [dm3] 3R_12669479_SNP [dm6]	C	T	9.778e^-5	0.502	INTRON CG14395
2L	15401192	2L_15401192_SNP [dm3] 2L_15401192_SNP [dm6]	A	G	9.783e^-5	0.502	UPSTREAM CR45374 INTERGENIC
2L	11458556	2L_11458556_SNP [dm3] 2L_11458556_SNP [dm6]	A	C	9.803e^-5	0.502	INTERGENIC
3R	8702606	3R_8702606_SNP [dm3] 3R_12876884_SNP [dm6]	A	C	9.820e^-5	0.502	INTERGENIC
2R	13873855	2R_13873855_SNP [dm3] 2R_17986350_SNP [dm6]	G	A	9.826e^-5	0.502	INTRON dpr13
X	14065943	X_14065943_SNP [dm3] X_14171910_SNP [dm6]	G	A	9.845e^-5	0.502	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
3L	9594519	3L_9594519_SNP [dm3] 3L_9601419_SNP [dm6]	T	A	9.851e^-5	0.502	UPSTREAM CG3306 & 1 other INTERGENIC
2R	3348368	2R_3348368_SNP [dm3] 2R_7460863_SNP [dm6]	A	T	9.855e^-5	0.502	NON_SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	17066921	3R_17066921_SNP [dm3] 3R_21241199_SNP [dm6]	A	G	9.883e^-5	0.502	INTERGENIC	regulatory region REDfly_CRMs
X	5328176	X_5328176_SNP [dm3] X_5434143_SNP [dm6]	A	C	9.937e^-5	0.504	INTRON CR44471
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	1.003e^-4	0.505	INTERGENIC
2R	7406958	2R_7406958_SNP [dm3] 2R_11519453_SNP [dm6]	G	A	1.003e^-4	0.505	INTERGENIC
3R	17066924	3R_17066924_INS [dm3] 3R_21241202_INS [dm6]	C	CCG	1.004e^-4	0.505	INTERGENIC	regulatory region REDfly_CRMs
2R	8196208	2R_8196208_SNP [dm3] 2R_12308703_SNP [dm6]	C	T	1.009e^-4	0.505	INTRON CG17739	TF binding site mE1_TFBS_chinmo
2L	7072903	2L_7072903_SNP [dm3] 2L_7072903_SNP [dm6]	C	T	1.009e^-4	0.505	INTRON Pvf2
3R	5429827	3R_5429827_SNP [dm3] 3R_9604105_SNP [dm6]	G	A	1.021e^-4	0.508	INTRON CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
3R	18302844	3R_18302844_SNP [dm3] 3R_22477122_SNP [dm6]	T	C	1.022e^-4	0.508	INTRON Nrx-1
2R	4750026	2R_4750026_SNP [dm3] 2R_8862521_SNP [dm6]	A	G	1.026e^-4	0.509	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	1.033e^-4	0.511	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6940783	2R_6940783_SNP [dm3] 2R_11053278_SNP [dm6]	C	G	1.034e^-4	0.511	INTRON luna
3R	8439668	3R_8439668_SNP [dm3] 3R_12613946_SNP [dm6]	T	A	1.040e^-4	0.512	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12746780	3R_12746780_SNP [dm3] 3R_16921058_SNP [dm6]	C	A	1.046e^-4	0.512	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	12745531	3R_12745531_SNP [dm3] 3R_16919809_SNP [dm6]	A	G	1.047e^-4	0.512	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	2365248	3L_2365248_SNP [dm3] 3L_2365248_SNP [dm6]	C	T	1.048e^-4	0.512	INTERGENIC
3R	8168439	3R_8168439_SNP [dm3] 3R_12342717_SNP [dm6]	A	T	1.057e^-4	0.512	DOWNSTREAM CG44956 INTERGENIC
3R	7800164	3R_7800164_SNP [dm3] 3R_11974442_SNP [dm6]	T	C	1.063e^-4	0.512	SYNONYMOUS_CODING Tango9 DOWNSTREAM CG10005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	1.063e^-4	0.512	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
3R	14299669	3R_14299669_SNP [dm3] 3R_18473947_SNP [dm6]	A	T	1.063e^-4	0.512	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16504673	2L_16504673_SNP [dm3] 2L_16504673_SNP [dm6]	A	G	1.064e^-4	0.512	INTRON Tpr2
2L	18977187	2L_18977187_SNP [dm3] 2L_18977187_SNP [dm6]	A	T	1.065e^-4	0.512	UTR_3_PRIME CG10431 DOWNSTREAM Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12694613	3R_12694613_SNP [dm3] 3R_16868891_SNP [dm6]	T	C	1.076e^-4	0.515	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6887676	2L_6887676_SNP [dm3] 2L_6887676_SNP [dm6]	A	T	1.081e^-4	0.515	INTRON Nlg2
2L	3000526	2L_3000526_INS [dm3] 2L_3000526_INS [dm6]	G	GAGG	1.092e^-4	0.515	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14549603	3R_14549603_SNP [dm3] 3R_18723881_SNP [dm6]	G	C	1.092e^-4	0.515	INTRON Cha
3R	8712178	3R_8712178_SNP [dm3] 3R_12886456_SNP [dm6]	G	T	1.095e^-4	0.515	INTERGENIC
X	3263478	X_3263478_SNP [dm3] X_3369445_SNP [dm6]	T	C	1.096e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	17066917	3R_17066917_SNP [dm3] 3R_21241195_SNP [dm6]	G	A	1.096e^-4	0.515	INTERGENIC	regulatory region REDfly_CRMs
X	16032172	X_16032172_SNP [dm3] X_16138139_SNP [dm6]	A	T	1.101e^-4	0.515	INTRON disco-r
X	12514387	X_12514387_SNP [dm3] X_12620354_SNP [dm6]	T	A	1.103e^-4	0.515	INTRON CG11085	TF binding site BDTNP1_TFBS_sna
3R	8777175	3R_8777175_SNP [dm3] 3R_12951453_SNP [dm6]	G	A	1.104e^-4	0.515	INTRON grsm
2R	5024966	2R_5024966_SNP [dm3] 2R_9137461_SNP [dm6]	C	T	1.115e^-4	0.515	NON_SYNONYMOUS_CODING alc UPSTREAM alc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8737277	3R_8737277_INS [dm3] 3R_12911555_INS [dm6]	C	CTATTCATAACTCATC...	1.116e^-4	0.515	UPSTREAM CG10909 INTERGENIC
2R	9971868	2R_9971868_SNP [dm3] 2R_14084363_SNP [dm6]	T	G	1.119e^-4	0.515	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	11444033	2L_11444033_SNP [dm3] 2L_11444033_SNP [dm6]	C	T	1.122e^-4	0.515	INTRON salm
3R	26215357	3R_26215357_SNP [dm3] 3R_30389635_SNP [dm6]	G	T	1.122e^-4	0.515	INTRON Fer2LCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	10131713	3R_10131713_SNP [dm3] 3R_14305991_SNP [dm6]	G	T	1.126e^-4	0.515	SYNONYMOUS_CODING su_Hw_
3R	8744855	3R_8744855_SNP [dm3] 3R_12919133_SNP [dm6]	C	T	1.128e^-4	0.515	INTRON beat-Vb
2R	9971871	2R_9971871_SNP [dm3] 2R_14084366_SNP [dm6]	C	A	1.131e^-4	0.515	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	8255297	3R_8255297_SNP [dm3] 3R_12429575_SNP [dm6]	C	G	1.131e^-4	0.515	UTR_5_PRIME CG5245 UPSTREAM CG5641	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25831587	3R_25831587_SNP [dm3] 3R_30005865_SNP [dm6]	C	T	1.133e^-4	0.515	DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_dl
3L	9594518	3L_9594518_SNP [dm3] 3L_9601418_SNP [dm6]	C	T	1.137e^-4	0.515	UPSTREAM CG3306 & 1 other INTERGENIC
3R	14504852	3R_14504852_SNP [dm3] 3R_18679130_SNP [dm6]	A	T	1.138e^-4	0.515	INTRON CG7706	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11472634	2L_11472634_INS [dm3] 2L_11472634_INS [dm6]	T	TG	1.140e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6363060	3L_6363060_SNP [dm3] 3L_6369960_SNP [dm6]	G	T	1.141e^-4	0.515	DOWNSTREAM CR45419 INTERGENIC
3R	12746844	3R_12746844_SNP [dm3] 3R_16921122_SNP [dm6]	A	G	1.144e^-4	0.515	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	12249062	2L_12249062_SNP [dm3] 2L_12249062_SNP [dm6]	C	T	1.146e^-4	0.515	INTRON aret
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	1.146e^-4	0.515	INTRON Octbeta2R
3R	12741544	3R_12741544_SNP [dm3] 3R_16915822_SNP [dm6]	T	G	1.147e^-4	0.515	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7772471	3R_7772471_SNP [dm3] 3R_11946749_SNP [dm6]	G	A	1.162e^-4	0.515	INTRON Cad87A
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	1.166e^-4	0.515	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9595439	3L_9595439_SNP [dm3] 3L_9602339_SNP [dm6]	C	G	1.166e^-4	0.515	SYNONYMOUS_CODING CG3306
2R	3346327	2R_3346327_SNP [dm3] 2R_7458822_SNP [dm6]	A	G	1.168e^-4	0.515	START_GAINED Inos UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	7797822	3R_7797822_SNP [dm3] 3R_11972100_SNP [dm6]	C	T	1.171e^-4	0.515	SPLICE_SITE_REGION GC2 SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1 & 1 other
2L	13886448	2L_13886448_SNP [dm3] 2L_13886448_SNP [dm6]	A	G	1.174e^-4	0.515	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	16395584	2R_16395584_SNP [dm3] 2R_20508079_SNP [dm6]	C	T	1.175e^-4	0.515	UPSTREAM CR44646 INTERGENIC
3R	6540219	3R_6540219_SNP [dm3] 3R_10714497_SNP [dm6]	T	A	1.177e^-4	0.515	UPSTREAM CG4073 INTERGENIC
2L	14911082	2L_14911082_SNP [dm3] 2L_14911082_SNP [dm6]	T	C	1.177e^-4	0.515	INTRON CG42313
2L	4976712	2L_4976712_SNP [dm3] 2L_4976712_SNP [dm6]	A	G	1.185e^-4	0.515	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
2R	14020974	2R_14020974_SNP [dm3] 2R_18133469_SNP [dm6]	G	T	1.190e^-4	0.515	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	1930243	X_1930243_SNP [dm3] X_2036210_SNP [dm6]	T	A	1.191e^-4	0.515	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3R	19571237	3R_19571237_SNP [dm3] 3R_23745515_SNP [dm6]	T	C	1.192e^-4	0.515	INTRON Hmgcr
3R	6542671	3R_6542671_SNP [dm3] 3R_10716949_SNP [dm6]	A	G	1.193e^-4	0.515	INTERGENIC
2R	1094500	2R_1094500_SNP [dm3] 2R_5206995_SNP [dm6]	T	G	1.193e^-4	0.515	INTRON Nipped-A	transposable element FlyBase
3L	5361910	3L_5361910_INS [dm3] 3L_5368810_INS [dm6]	C	CCGTTGGCAGCTTAGGAATT...	1.195e^-4	0.515	UPSTREAM CG10635 & 1 other INTERGENIC
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	1.204e^-4	0.515	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8129629	2R_8129629_SNP [dm3] 2R_12242124_SNP [dm6]	A	T	1.207e^-4	0.515	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	14714501	2R_14714501_SNP [dm3] 2R_18826996_SNP [dm6]	T	C	1.208e^-4	0.515	INTRON CG15097
X	16810998	X_16810998_SNP [dm3] X_16916965_SNP [dm6]	G	A	1.210e^-4	0.515	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	7768218	3R_7768218_SNP [dm3] 3R_11942496_SNP [dm6]	A	C	1.211e^-4	0.515	INTRON Cad87A
2L	1645119	2L_1645119_SNP [dm3] 2L_1645119_SNP [dm6]	C	T	1.215e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11299436	3L_11299436_INS [dm3] 3L_11306336_INS [dm6]	A	AT	1.217e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8253437	3R_8253437_SNP [dm3] 3R_12427715_SNP [dm6]	C	T	1.220e^-4	0.515	NON_SYNONYMOUS_CODING Sas DOWNSTREAM CG5641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7437428	2R_7437428_SNP [dm3] 2R_11549923_SNP [dm6]	C	T	1.227e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	1.228e^-4	0.515	UPSTREAM CR44264 EXON CR45567
3R	6574413	3R_6574413_SNP [dm3] 3R_10748691_SNP [dm6]	G	C	1.234e^-4	0.515	INTRON TkR86C
3R	5422476	3R_5422476_SNP [dm3] 3R_9596754_SNP [dm6]	C	T	1.235e^-4	0.515	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8137315	2R_8137315_SNP [dm3] 2R_12249810_SNP [dm6]	G	A	1.236e^-4	0.515	INTERGENIC
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	1.239e^-4	0.515	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
2L	15560151	2L_15560151_SNP [dm3] 2L_15560151_SNP [dm6]	T	C	1.247e^-4	0.515	INTRON kek3
X	14304239	X_14304239_SNP [dm3] X_14410206_SNP [dm6]	A	G	1.249e^-4	0.515	INTRON dpr8
X	14304243	X_14304243_SNP [dm3] X_14410210_SNP [dm6]	A	G	1.249e^-4	0.515	INTRON dpr8
3R	16860417	3R_16860417_SNP [dm3] 3R_21034695_SNP [dm6]	G	A	1.251e^-4	0.515	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3R	27139170	3R_27139170_SNP [dm3] 3R_31313448_SNP [dm6]	G	T	1.257e^-4	0.515	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12735183	3R_12735183_SNP [dm3] 3R_16909461_SNP [dm6]	G	A	1.259e^-4	0.515	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15738608	2L_15738608_SNP [dm3] 2L_15738608_SNP [dm6]	C	T	1.263e^-4	0.515	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16056059	2R_16056059_DEL [dm3] 2R_20168554_DEL [dm6]	GGCTAGATG	G	1.263e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20319613	3R_20319613_SNP [dm3] 3R_24493891_SNP [dm6]	T	G	1.264e^-4	0.515	INTERGENIC
3L	9526161	3L_9526161_SNP [dm3] 3L_9533061_SNP [dm6]	A	T	1.269e^-4	0.515	INTERGENIC
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.272e^-4	0.515	INTRON fru
3L	5416388	3L_5416388_SNP [dm3] 3L_5423288_SNP [dm6]	T	A	1.273e^-4	0.515	UPSTREAM CG34391 INTERGENIC
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	1.274e^-4	0.515	INTRON GC1
3R	8376432	3R_8376432_SNP [dm3] 3R_12550710_SNP [dm6]	T	C	1.276e^-4	0.515	UTR_3_PRIME Octbeta2R DOWNSTREAM mir-284
2R	18073490	2R_18073490_SNP [dm3] 2R_22185985_SNP [dm6]	A	T	1.277e^-4	0.515	UTR_5_PRIME Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5303232	3R_5303232_SNP [dm3] 3R_9477510_SNP [dm6]	A	C	1.279e^-4	0.515	INTRON CG16779
X	5328178	X_5328178_SNP [dm3] X_5434145_SNP [dm6]	G	A	1.286e^-4	0.515	INTRON CR44471
2L	11442865	2L_11442865_SNP [dm3] 2L_11442865_SNP [dm6]	A	C	1.291e^-4	0.515	INTRON salm
3R	26778687	3R_26778687_SNP [dm3] 3R_30952965_SNP [dm6]	G	A	1.293e^-4	0.515	INTERGENIC
3R	19204407	3R_19204407_SNP [dm3] 3R_23378685_SNP [dm6]	C	T	1.295e^-4	0.515	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	9555411	3R_9555411_SNP [dm3] 3R_13729689_SNP [dm6]	G	T	1.297e^-4	0.515	INTRON CG34383	TF binding site mE1_TFBS_inv
3R	8976216	3R_8976216_SNP [dm3] 3R_13150494_SNP [dm6]	T	C	1.304e^-4	0.515	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	4976664	2L_4976664_SNP [dm3] 2L_4976664_SNP [dm6]	T	G	1.305e^-4	0.515	UPSTREAM CG3792 INTRON Gmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA
3L	10397390	3L_10397390_SNP [dm3] 3L_10404290_SNP [dm6]	G	A	1.305e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8201586	2R_8201586_SNP [dm3] 2R_12314081_SNP [dm6]	G	A	1.310e^-4	0.515	UPSTREAM CG30046 DOWNSTREAM CG30203 INTERGENIC
3R	23254137	3R_23254137_SNP [dm3] 3R_27428415_SNP [dm6]	T	C	1.316e^-4	0.515	INTRON side
3L	9410635	3L_9410635_SNP [dm3] 3L_9417535_SNP [dm6]	C	G	1.317e^-4	0.515	UPSTREAM CG3982 INTRON CG3967
2L	6017943	2L_6017943_SNP [dm3] 2L_6017943_SNP [dm6]	A	T	1.320e^-4	0.515	INTRON H2.0
3R	8933787	3R_8933787_SNP [dm3] 3R_13108065_SNP [dm6]	A	G	1.321e^-4	0.515	INTRON timeout	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8283455	3R_8283455_SNP [dm3] 3R_12457733_SNP [dm6]	G	A	1.324e^-4	0.515	NON_SYNONYMOUS_CODING trus DOWNSTREAM CG5961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4109613	3L_4109613_SNP [dm3] 3L_4109613_SNP [dm6]	A	G	1.327e^-4	0.515	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6448466	2R_6448466_SNP [dm3] 2R_10560961_SNP [dm6]	G	T	1.329e^-4	0.515	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12891988	3L_12891988_DEL [dm3] 3L_12898888_DEL [dm6]	TC	T	1.332e^-4	0.515	INTERGENIC
3R	46947	3R_46947_SNP [dm3] 3R_4221225_SNP [dm6]	A	G	1.334e^-4	0.515	NON_SYNONYMOUS_CODING aux	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7776814	X_7776814_SNP [dm3] X_7882781_SNP [dm6]	C	G	1.336e^-4	0.515	NON_SYNONYMOUS_CODING Ir7f
3R	14299723	3R_14299723_SNP [dm3] 3R_18474001_SNP [dm6]	C	T	1.340e^-4	0.515	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8729751	3R_8729751_SNP [dm3] 3R_12904029_SNP [dm6]	C	A	1.342e^-4	0.515	INTERGENIC
3R	7633242	3R_7633242_SNP [dm3] 3R_11807520_SNP [dm6]	A	G	1.347e^-4	0.515	UPSTREAM ClC-a INTRON ClC-a
3R	21702533	3R_21702533_DEL [dm3] 3R_25876811_DEL [dm6]	TCT	T	1.351e^-4	0.515	INTRON Tsp96F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17022610	3L_17022610_SNP [dm3] 3L_17029510_SNP [dm6]	A	G	1.351e^-4	0.515	SYNONYMOUS_CODING CG7730 DOWNSTREAM Ilp8	TF binding site mE1_TFBS_inv
X	19633477	X_19633477_SNP [dm3] X_19739444_SNP [dm6]	A	T	1.351e^-4	0.515	UTR_3_PRIME CG14234
3R	13045164	3R_13045164_SNP [dm3] 3R_17219442_SNP [dm6]	A	C	1.351e^-4	0.515	UTR_5_PRIME CG31262
2L	1787625	2L_1787625_SNP [dm3] 2L_1787625_SNP [dm6]	C	A	1.355e^-4	0.515	INTERGENIC
3R	6568138	3R_6568138_SNP [dm3] 3R_10742416_SNP [dm6]	C	T	1.361e^-4	0.515	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27138310	3R_27138310_DEL [dm3] 3R_31312588_DEL [dm6]	TTCTTGCAACAGCAACATTA...	T	1.366e^-4	0.515	INTRON CG34347
3R	27138346	3R_27138346_SNP [dm3] 3R_31312624_SNP [dm6]	C	A	1.366e^-4	0.515	INTRON CG34347
2L	11442474	2L_11442474_SNP [dm3] 2L_11442474_SNP [dm6]	C	A	1.372e^-4	0.515	INTRON salm
X	14062596	X_14062596_SNP [dm3] X_14168563_SNP [dm6]	T	A	1.372e^-4	0.515	INTERGENIC
3L	752862	3L_752862_DEL [dm3] 3L_752862_DEL [dm6]	TGGAA	T	1.378e^-4	0.515	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18178787	2R_18178787_SNP [dm3] 2R_22291282_SNP [dm6]	T	G	1.385e^-4	0.515	UPSTREAM CR43422 INTERGENIC
2L	9532134	2L_9532134_SNP [dm3] 2L_9532134_SNP [dm6]	T	A	1.387e^-4	0.515	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3R	8428534	3R_8428534_SNP [dm3] 3R_12602812_SNP [dm6]	C	A	1.396e^-4	0.515	INTERGENIC
3R	8492929	3R_8492929_SNP [dm3] 3R_12667207_SNP [dm6]	T	C	1.397e^-4	0.515	UPSTREAM CG14395 INTRON CG14395
X	7575984	X_7575984_SNP [dm3] X_7681951_SNP [dm6]	T	C	1.400e^-4	0.515	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	12747068	3R_12747068_SNP [dm3] 3R_16921346_SNP [dm6]	T	C	1.403e^-4	0.515	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	11323812	2L_11323812_DEL [dm3] 2L_11323812_DEL [dm6]	CGTTC	C	1.407e^-4	0.515	INTERGENIC
3R	27141810	3R_27141810_SNP [dm3] 3R_31316088_SNP [dm6]	G	A	1.411e^-4	0.515	INTRON CG34347
X	8727882	X_8727882_SNP [dm3] X_8833849_SNP [dm6]	A	C	1.415e^-4	0.515	INTERGENIC
3L	10295952	3L_10295952_SNP [dm3] 3L_10302852_SNP [dm6]	T	G	1.417e^-4	0.515	INTERGENIC
3R	6567987	3R_6567987_SNP [dm3] 3R_10742265_SNP [dm6]	C	T	1.417e^-4	0.515	INTRON TkR86C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7576009	X_7576009_SNP [dm3] X_7681976_SNP [dm6]	G	A	1.420e^-4	0.515	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2L	12106971	2L_12106971_SNP [dm3] 2L_12106971_SNP [dm6]	G	T	1.420e^-4	0.515	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
3R	25144575	3R_25144575_SNP [dm3] 3R_29318853_SNP [dm6]	T	G	1.421e^-4	0.515	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6540033	3R_6540033_SNP [dm3] 3R_10714311_SNP [dm6]	C	G	1.424e^-4	0.515	UPSTREAM CG4073 INTERGENIC
3R	8782290	3R_8782290_SNP [dm3] 3R_12956568_SNP [dm6]	A	G	1.426e^-4	0.515	INTRON grsm
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	1.427e^-4	0.515	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18167226	3R_18167226_SNP [dm3] 3R_22341504_SNP [dm6]	G	A	1.428e^-4	0.515	INTRON CG5386
3R	18436111	3R_18436111_SNP [dm3] 3R_22610389_SNP [dm6]	T	A	1.432e^-4	0.515	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	1.433e^-4	0.515	INTERGENIC
3L	5361983	3L_5361983_SNP [dm3] 3L_5368883_SNP [dm6]	A	G	1.438e^-4	0.515	UPSTREAM CG10635 & 1 other INTERGENIC
X	5374453	X_5374453_SNP [dm3] X_5480420_SNP [dm6]	A	C	1.439e^-4	0.515	INTRON SPR
2L	11947689	2L_11947689_DEL [dm3] 2L_11947689_DEL [dm6]	AGC	A	1.442e^-4	0.515	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
3R	18064601	3R_18064601_SNP [dm3] 3R_22238879_SNP [dm6]	C	A	1.442e^-4	0.515	INTRON SKIP
2R	10731181	2R_10731181_SNP [dm3] 2R_14843676_SNP [dm6]	T	A	1.445e^-4	0.515	INTRON NaPi-T
2L	17696516	2L_17696516_SNP [dm3] 2L_17696516_SNP [dm6]	G	C	1.448e^-4	0.515	INTRON CadN
3R	14297606	3R_14297606_SNP [dm3] 3R_18471884_SNP [dm6]	A	G	1.452e^-4	0.515	INTRON fru
2R	15138052	2R_15138052_SNP [dm3] 2R_19250547_SNP [dm6]	A	G	1.453e^-4	0.515	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
3L	14073920	3L_14073920_SNP [dm3] 3L_14080820_SNP [dm6]	A	G	1.462e^-4	0.515	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1654714	2L_1654714_INS [dm3] 2L_1654714_INS [dm6]	A	AA	1.462e^-4	0.515	INTRON chinmo
2R	10792177	2R_10792177_SNP [dm3] 2R_14904672_SNP [dm6]	A	G	1.472e^-4	0.515	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6793261	2R_6793261_SNP [dm3] 2R_10905756_SNP [dm6]	G	A	1.473e^-4	0.515	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9702178	2L_9702178_SNP [dm3] 2L_9702178_SNP [dm6]	T	C	1.481e^-4	0.515	DOWNSTREAM CG31710 INTRON pelo	TF binding site mE1_TFBS_chinmo
3R	6537530	3R_6537530_SNP [dm3] 3R_10711808_SNP [dm6]	T	C	1.481e^-4	0.515	UPSTREAM CG14689 INTERGENIC
3R	8468177	3R_8468177_SNP [dm3] 3R_12642455_SNP [dm6]	G	T	1.483e^-4	0.515	UTR_5_PRIME CG6753	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5416468	3L_5416468_SNP [dm3] 3L_5423368_SNP [dm6]	A	T	1.488e^-4	0.515	UPSTREAM CG34391 INTERGENIC
3R	6505177	3R_6505177_SNP [dm3] 3R_10679455_SNP [dm6]	A	T	1.489e^-4	0.515	INTRON CG14688
3R	14507067	3R_14507067_SNP [dm3] 3R_18681345_SNP [dm6]	C	A	1.493e^-4	0.515	INTRON CG7708
3R	6546552	3R_6546552_SNP [dm3] 3R_10720830_SNP [dm6]	G	A	1.496e^-4	0.515	INTERGENIC
3R	24602710	3R_24602710_SNP [dm3] 3R_28776988_SNP [dm6]	T	C	1.497e^-4	0.515	UPSTREAM CR44952 INTERGENIC
2L	7938697	2L_7938697_SNP [dm3] 2L_7938697_SNP [dm6]	A	G	1.501e^-4	0.515	INTRON Snoo
2R	10532702	2R_10532702_INS [dm3] 2R_14645197_INS [dm6]	T	TA	1.503e^-4	0.515	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	21388141	3L_21388141_SNP [dm3] 3L_21395041_SNP [dm6]	A	G	1.513e^-4	0.515	INTRON rgn
X	16803137	X_16803137_SNP [dm3] X_16909104_SNP [dm6]	T	C	1.518e^-4	0.515	INTRON CR44754
3L	13989273	3L_13989273_SNP [dm3] 3L_13996173_SNP [dm6]	A	G	1.519e^-4	0.515	SYNONYMOUS_CODING 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6570954	3R_6570954_SNP [dm3] 3R_10745232_SNP [dm6]	T	G	1.524e^-4	0.515	INTRON TkR86C
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	1.526e^-4	0.515	INTRON salm
3R	14299733	3R_14299733_SNP [dm3] 3R_18474011_SNP [dm6]	G	A	1.526e^-4	0.515	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14158393	2R_14158393_SNP [dm3] 2R_18270888_SNP [dm6]	A	G	1.529e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16860312	3R_16860312_SNP [dm3] 3R_21034590_SNP [dm6]	A	G	1.533e^-4	0.515	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3R	8760876	3R_8760876_SNP [dm3] 3R_12935154_SNP [dm6]	T	C	1.534e^-4	0.515	DOWNSTREAM beat-Vb INTERGENIC
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	1.540e^-4	0.515	INTRON Cad87A
X	14062590	X_14062590_SNP [dm3] X_14168557_SNP [dm6]	T	A	1.546e^-4	0.515	INTERGENIC
3R	14511396	3R_14511396_SNP [dm3] 3R_18685674_SNP [dm6]	C	A	1.547e^-4	0.515	UTR_3_PRIME CG7708 DOWNSTREAM CG7708
3R	11027859	3R_11027859_SNP [dm3] 3R_15202137_SNP [dm6]	A	T	1.550e^-4	0.515	SYNONYMOUS_CODING CG42542 DOWNSTREAM Spn88Ea
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	1.551e^-4	0.515	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5622031	2L_5622031_SNP [dm3] 2L_5622031_SNP [dm6]	C	T	1.553e^-4	0.515	NON_SYNONYMOUS_CODING Cyp6a16
2L	15764094	2L_15764094_SNP [dm3] 2L_15764094_SNP [dm6]	T	G	1.556e^-4	0.515	UPSTREAM CG3793 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9617224	3R_9617224_SNP [dm3] 3R_13791502_SNP [dm6]	A	C	1.559e^-4	0.515	INTERGENIC
3R	8172771	3R_8172771_SNP [dm3] 3R_12347049_SNP [dm6]	C	A	1.559e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	18467177	2R_18467177_SNP [dm3] 2R_22579672_SNP [dm6]	T	C	1.561e^-4	0.515	INTRON dnr1
2R	9881569	2R_9881569_SNP [dm3] 2R_13994064_SNP [dm6]	A	G	1.564e^-4	0.515	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	21703221	3R_21703221_SNP [dm3] 3R_25877499_SNP [dm6]	T	G	1.567e^-4	0.515	INTRON Tsp96F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4110035	3L_4110035_SNP [dm3] 3L_4110035_SNP [dm6]	G	A	1.568e^-4	0.515	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20804324	3R_20804324_SNP [dm3] 3R_24978602_SNP [dm6]	G	C	1.578e^-4	0.515	INTERGENIC
X	7778968	X_7778968_SNP [dm3] X_7884935_SNP [dm6]	C	A	1.580e^-4	0.515	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3R	12747286	3R_12747286_SNP [dm3] 3R_16921564_SNP [dm6]	G	A	1.584e^-4	0.515	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12759802	3R_12759802_SNP [dm3] 3R_16934080_SNP [dm6]	G	A	1.585e^-4	0.515	START_GAINED Abd-B UTR_5_PRIME Abd-B INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10385493	3L_10385493_SNP [dm3] 3L_10392393_SNP [dm6]	A	C	1.586e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22751011	3R_22751011_SNP [dm3] 3R_26925289_SNP [dm6]	C	G	1.590e^-4	0.515	INTRON sda
3R	12741611	3R_12741611_SNP [dm3] 3R_16915889_SNP [dm6]	T	A	1.591e^-4	0.515	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26779403	3R_26779403_SNP [dm3] 3R_30953681_SNP [dm6]	G	A	1.592e^-4	0.515	INTERGENIC
2L	14012460	2L_14012460_SNP [dm3] 2L_14012460_SNP [dm6]	A	T	1.593e^-4	0.515	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15645519	3L_15645519_SNP [dm3] 3L_15652419_SNP [dm6]	G	A	1.594e^-4	0.515	UPSTREAM Eig71Ed & 1 other INTERGENIC
3R	22054172	3R_22054172_SNP [dm3] 3R_26228450_SNP [dm6]	G	A	1.601e^-4	0.515	INTERGENIC
2R	8201980	2R_8201980_SNP [dm3] 2R_12314475_SNP [dm6]	G	A	1.603e^-4	0.515	DOWNSTREAM CG30203 INTRON CG30046
X	2991712	X_2991712_SNP [dm3] X_3097679_SNP [dm6]	T	C	1.604e^-4	0.515	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	746353	2L_746353_SNP [dm3] 2L_746353_SNP [dm6]	T	C	1.608e^-4	0.515	INTERGENIC
3R	16860136	3R_16860136_SNP [dm3] 3R_21034414_SNP [dm6]	A	G	1.614e^-4	0.515	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	6547459	3R_6547459_SNP [dm3] 3R_10721737_SNP [dm6]	T	G	1.615e^-4	0.515	INTERGENIC
3R	24603575	3R_24603575_SNP [dm3] 3R_28777853_SNP [dm6]	G	A	1.618e^-4	0.515	DOWNSTREAM CR44952 INTERGENIC
3R	25469121	3R_25469121_SNP [dm3] 3R_29643399_SNP [dm6]	G	A	1.618e^-4	0.515	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5895436	X_5895436_SNP [dm3] X_6001403_SNP [dm6]	T	G	1.619e^-4	0.515	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6534281	3R_6534281_SNP [dm3] 3R_10708559_SNP [dm6]	G	A	1.623e^-4	0.515	UTR_3_PRIME CG31373 UPSTREAM CG31278	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8701872	3R_8701872_SNP [dm3] 3R_12876150_SNP [dm6]	T	C	1.627e^-4	0.515	INTERGENIC
X	14033772	X_14033772_SNP [dm3] X_14139739_SNP [dm6]	G	T	1.631e^-4	0.515	INTERGENIC
3R	26779841	3R_26779841_SNP [dm3] 3R_30954119_SNP [dm6]	C	T	1.634e^-4	0.515	INTERGENIC
3L	8532957	3L_8532957_SNP [dm3] 3L_8539857_SNP [dm6]	G	T	1.636e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17066909	3R_17066909_SNP [dm3] 3R_21241187_SNP [dm6]	G	A	1.637e^-4	0.515	INTERGENIC	regulatory region REDfly_CRMs
3R	7762299	3R_7762299_SNP [dm3] 3R_11936577_SNP [dm6]	C	T	1.642e^-4	0.515	INTRON Cad87A
3R	16733992	3R_16733992_SNP [dm3] 3R_20908270_SNP [dm6]	G	T	1.643e^-4	0.515	DOWNSTREAM CG31191 & 1 other INTERGENIC	transposable element FlyBase
2R	6333756	2R_6333756_SNP [dm3] 2R_10446251_SNP [dm6]	C	T	1.644e^-4	0.515	INTRON Galphao
X	6575773	X_6575773_SNP [dm3] X_6681740_SNP [dm6]	T	C	1.649e^-4	0.515	UTR_3_PRIME l_1_G0255 UPSTREAM CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7712259	3R_7712259_SNP [dm3] 3R_11886537_SNP [dm6]	T	A	1.651e^-4	0.515	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7943653	2L_7943653_SNP [dm3] 2L_7943653_SNP [dm6]	A	G	1.655e^-4	0.515	INTRON Snoo
3L	5289494	3L_5289494_SNP [dm3] 3L_5296394_SNP [dm6]	T	C	1.656e^-4	0.515	INTERGENIC
2R	17985747	2R_17985747_SNP [dm3] 2R_22098242_SNP [dm6]	G	T	1.663e^-4	0.515	INTRON CG11073
3L	6866927	3L_6866927_SNP [dm3] 3L_6873827_SNP [dm6]	A	G	1.663e^-4	0.515	INTERGENIC
3R	8226635	3R_8226635_SNP [dm3] 3R_12400913_SNP [dm6]	T	C	1.664e^-4	0.515	SYNONYMOUS_CODING lig3 INTRON CG34402	TF binding site mE1_TFBS_sens
2R	3340882	2R_3340882_INS [dm3] 2R_7453377_INS [dm6]	T	TAAGT	1.667e^-4	0.515	INTERGENIC
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	1.669e^-4	0.515	INTRON beat-Vc
2L	7788985	2L_7788985_SNP [dm3] 2L_7788985_SNP [dm6]	T	C	1.672e^-4	0.515	INTRON CG7149
3R	7797512	3R_7797512_SNP [dm3] 3R_11971790_SNP [dm6]	T	G	1.673e^-4	0.515	SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1
3R	6549116	3R_6549116_SNP [dm3] 3R_10723394_SNP [dm6]	G	T	1.680e^-4	0.515	INTERGENIC
2R	3860712	2R_3860712_SNP [dm3] 2R_7973207_SNP [dm6]	C	A	1.681e^-4	0.515	DOWNSTREAM ACC INTRON CSN4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11296220	3L_11296220_SNP [dm3] 3L_11303120_SNP [dm6]	T	A	1.683e^-4	0.515	INTERGENIC
2R	17418308	2R_17418308_SNP [dm3] 2R_21530803_SNP [dm6]	A	G	1.683e^-4	0.515	DOWNSTREAM CR44725 INTRON Egfr	TF binding site BDTNP1_TFBS_twi
2R	8198516	2R_8198516_SNP [dm3] 2R_12311011_SNP [dm6]	C	T	1.693e^-4	0.515	NON_SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
3R	8759499	3R_8759499_SNP [dm3] 3R_12933777_SNP [dm6]	C	A	1.697e^-4	0.515	NON_SYNONYMOUS_CODING beat-Vb
3L	10295963	3L_10295963_SNP [dm3] 3L_10302863_SNP [dm6]	C	T	1.698e^-4	0.515	INTERGENIC
2L	11472183	2L_11472183_SNP [dm3] 2L_11472183_SNP [dm6]	A	T	1.698e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8710861	2L_8710861_SNP [dm3] 2L_8710861_SNP [dm6]	A	G	1.700e^-4	0.515	SYNONYMOUS_CODING raw	TF binding site mE1_TFBS_chinmo
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	1.700e^-4	0.515	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8289969	2R_8289969_INS [dm3] 2R_12402464_INS [dm6]	A	AGAAAGTGATTATCACCAAC...	1.702e^-4	0.515	INTRON Cpr49Ae
2R	17363809	2R_17363809_SNP [dm3] 2R_21476304_SNP [dm6]	T	A	1.704e^-4	0.515	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9856857	3L_9856857_SNP [dm3] 3L_9863757_SNP [dm6]	A	T	1.705e^-4	0.515	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	17213664	3R_17213664_SNP [dm3] 3R_21387942_SNP [dm6]	T	A	1.709e^-4	0.515	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16134382	3L_16134382_DEL [dm3] 3L_16141282_DEL [dm6]	CGA	C	1.710e^-4	0.515	INTRON CG5151 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7749508	3R_7749508_SNP [dm3] 3R_11923786_SNP [dm6]	A	G	1.715e^-4	0.515	INTRON Cad87A
3R	8482403	3R_8482403_SNP [dm3] 3R_12656681_SNP [dm6]	A	G	1.716e^-4	0.515	UTR_5_PRIME CG6225
3R	25079138	3R_25079138_SNP [dm3] 3R_29253416_SNP [dm6]	G	A	1.721e^-4	0.515	NON_SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20011337	2R_20011337_SNP [dm3] 2R_24123814_SNP [dm6]	T	C	1.726e^-4	0.515	SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12488135	2R_12488135_SNP [dm3] 2R_16600630_SNP [dm6]	T	C	1.731e^-4	0.515	DOWNSTREAM CG5089 INTRON CG8303
X	18050219	X_18050219_SNP [dm3] X_18156186_SNP [dm6]	A	T	1.732e^-4	0.515	INTRON Frq1
3R	25081143	3R_25081143_SNP [dm3] 3R_29255421_SNP [dm6]	T	C	1.733e^-4	0.515	UTR_5_PRIME stg UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	16145832	3R_16145832_SNP [dm3] 3R_20320110_SNP [dm6]	C	A	1.736e^-4	0.515	INTRON CG42668
3R	16145837	3R_16145837_SNP [dm3] 3R_20320115_SNP [dm6]	A	G	1.736e^-4	0.515	INTRON CG42668
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	1.739e^-4	0.515	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5899445	3L_5899445_SNP [dm3] 3L_5906345_SNP [dm6]	T	C	1.740e^-4	0.515	SYNONYMOUS_CODING CG10486
3R	7974197	3R_7974197_SNP [dm3] 3R_12148475_SNP [dm6]	T	G	1.742e^-4	0.515	INTRON dpr15
3R	10212042	3R_10212042_SNP [dm3] 3R_14386320_SNP [dm6]	C	A	1.743e^-4	0.515	INTERGENIC
2L	21979204	2L_21979204_SNP [dm3] 2L_21979204_SNP [dm6]	T	A	1.746e^-4	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22031350	3R_22031350_SNP [dm3] 3R_26205628_SNP [dm6]	T	G	1.748e^-4	0.515	INTRON CR44320
2L	7934884	2L_7934884_SNP [dm3] 2L_7934884_SNP [dm6]	A	C	1.761e^-4	0.515	INTRON Snoo
3R	12743898	3R_12743898_SNP [dm3] 3R_16918176_SNP [dm6]	T	A	1.762e^-4	0.515	INTRON iab-8	TF binding site mE1_TFBS_Trl
3L	7389360	3L_7389360_SNP [dm3] 3L_7396260_SNP [dm6]	G	A	1.762e^-4	0.515	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16042712	2L_16042712_DEL [dm3] 2L_16042712_DEL [dm6]	CA	C	1.765e^-4	0.515	UPSTREAM BicC & 1 other INTRON BicC & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	1.767e^-4	0.515	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2L	14930617	2L_14930617_INS [dm3] 2L_14930617_INS [dm6]	G	GCCTGG	1.771e^-4	0.515	DOWNSTREAM CG3491 INTRON CG42313
3R	12742605	3R_12742605_SNP [dm3] 3R_16916883_SNP [dm6]	A	T	1.773e^-4	0.515	INTRON iab-8	TF binding site mE1_TFBS_cad
2L	7789035	2L_7789035_SNP [dm3] 2L_7789035_SNP [dm6]	T	C	1.774e^-4	0.515	INTRON CG7149
2R	3348360	2R_3348360_SNP [dm3] 2R_7460855_SNP [dm6]	A	C	1.774e^-4	0.515	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
3R	8479292	3R_8479292_SNP [dm3] 3R_12653570_SNP [dm6]	C	T	1.776e^-4	0.515	DOWNSTREAM Dtg INTERGENIC
3R	17066906	3R_17066906_SNP [dm3] 3R_21241184_SNP [dm6]	G	C	1.778e^-4	0.515	INTERGENIC	regulatory region REDfly_CRMs
2L	10195574	2L_10195574_SNP [dm3] 2L_10195574_SNP [dm6]	G	T	1.779e^-4	0.515	SYNONYMOUS_CODING Sur
3R	6537736	3R_6537736_SNP [dm3] 3R_10712014_SNP [dm6]	G	A	1.779e^-4	0.515	UPSTREAM CG14689 INTERGENIC
3R	6551989	3R_6551989_SNP [dm3] 3R_10726267_SNP [dm6]	T	C	1.782e^-4	0.515	INTERGENIC
2R	10889274	2R_10889274_SNP [dm3] 2R_15001769_SNP [dm6]	T	C	1.785e^-4	0.515	INTERGENIC
2L	11472637	2L_11472637_SNP [dm3] 2L_11472637_SNP [dm6]	C	G	1.789e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	528469	2L_528469_SNP [dm3] 2L_528469_SNP [dm6]	G	T	1.790e^-4	0.515	INTRON ush	regulatory region REDfly_CRMs
2L	7934708	2L_7934708_SNP [dm3] 2L_7934708_SNP [dm6]	A	T	1.793e^-4	0.515	INTRON Snoo
3L	13188077	3L_13188077_SNP [dm3] 3L_13194977_SNP [dm6]	A	G	1.798e^-4	0.515	INTERGENIC
3L	13188083	3L_13188083_SNP [dm3] 3L_13194983_SNP [dm6]	C	T	1.798e^-4	0.515	INTERGENIC
3L	13188084	3L_13188084_SNP [dm3] 3L_13194984_SNP [dm6]	C	T	1.798e^-4	0.515	INTERGENIC
3R	12678879	3R_12678879_SNP [dm3] 3R_16853157_SNP [dm6]	C	A	1.800e^-4	0.515	INTRON iab-8 & 1 other EXON iab-4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3511568	3R_3511568_SNP [dm3] 3R_7685846_SNP [dm6]	G	A	1.800e^-4	0.515	INTRON Nlg1
3L	15311532	3L_15311532_SNP [dm3] 3L_15318432_SNP [dm6]	T	C	1.802e^-4	0.515	INTERGENIC
3L	10373211	3L_10373211_SNP [dm3] 3L_10380111_SNP [dm6]	A	T	1.807e^-4	0.515	INTERGENIC
X	16078103	X_16078103_SNP [dm3] X_16184070_SNP [dm6]	A	T	1.811e^-4	0.515	INTERGENIC
2R	8188143	2R_8188143_SNP [dm3] 2R_12300638_SNP [dm6]	C	T	1.814e^-4	0.515	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2992422	X_2992422_SNP [dm3] X_3098389_SNP [dm6]	A	T	1.816e^-4	0.515	INTRON kirre	regulatory region REDfly_CRMs
3L	13253739	3L_13253739_SNP [dm3] 3L_13260639_SNP [dm6]	G	C	1.818e^-4	0.515	INTRON caps
X	7575981	X_7575981_SNP [dm3] X_7681948_SNP [dm6]	T	C	1.823e^-4	0.515	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2L	14958652	2L_14958652_SNP [dm3] 2L_14958652_SNP [dm6]	A	T	1.829e^-4	0.515	INTRON CG42313
2R	18448596	2R_18448596_SNP [dm3] 2R_22561091_SNP [dm6]	A	G	1.832e^-4	0.515	UTR_5_PRIME px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3R	6232782	3R_6232782_SNP [dm3] 3R_10407060_SNP [dm6]	G	T	1.832e^-4	0.515	UTR_5_PRIME CG6325	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8703655	3R_8703655_SNP [dm3] 3R_12877933_SNP [dm6]	A	C	1.834e^-4	0.515	INTERGENIC
3R	11283491	3R_11283491_SNP [dm3] 3R_15457769_SNP [dm6]	T	C	1.836e^-4	0.515	INTRON AdamTS-A
3R	25080196	3R_25080196_SNP [dm3] 3R_29254474_SNP [dm6]	C	G	1.838e^-4	0.515	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15051741	2L_15051741_SNP [dm3] 2L_15051741_SNP [dm6]	C	A	1.838e^-4	0.515	INTRON ck	regulatory region REDfly_CRMs
2L	14422258	2L_14422258_SNP [dm3] 2L_14422258_SNP [dm6]	G	A	1.842e^-4	0.515	INTERGENIC	TF binding site mE1_TFBS_cad
X	12144772	X_12144772_SNP [dm3] X_12250739_SNP [dm6]	T	A	1.844e^-4	0.515	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5416401	3L_5416401_SNP [dm3] 3L_5423301_SNP [dm6]	G	T	1.844e^-4	0.515	UPSTREAM CG34391 INTERGENIC
X	7576239	X_7576239_SNP [dm3] X_7682206_SNP [dm6]	A	T	1.846e^-4	0.515	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3L	5898432	3L_5898432_SNP [dm3] 3L_5905332_SNP [dm6]	A	C	1.846e^-4	0.515	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3R	14579571	3R_14579571_SNP [dm3] 3R_18753849_SNP [dm6]	G	A	1.851e^-4	0.515	SYNONYMOUS_CODING CG14299
3R	9535738	3R_9535738_SNP [dm3] 3R_13710016_SNP [dm6]	T	A	1.851e^-4	0.515	UPSTREAM CG31469 DOWNSTREAM primo-2 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
X	7576191	X_7576191_SNP [dm3] X_7682158_SNP [dm6]	T	A	1.855e^-4	0.515	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2L	14950729	2L_14950729_SNP [dm3] 2L_14950729_SNP [dm6]	T	C	1.860e^-4	0.516	INTRON CG42313
3L	13989237	3L_13989237_SNP [dm3] 3L_13996137_SNP [dm6]	T	C	1.869e^-4	0.517	SYNONYMOUS_CODING 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9960654	2R_9960654_SNP [dm3] 2R_14073149_SNP [dm6]	A	T	1.869e^-4	0.517	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14915492	2L_14915492_SNP [dm3] 2L_14915492_SNP [dm6]	G	T	1.880e^-4	0.519	INTRON CG42313
3R	14503004	3R_14503004_SNP [dm3] 3R_18677282_SNP [dm6]	A	G	1.883e^-4	0.519	SYNONYMOUS_CODING CG7705 UPSTREAM CG7706	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10532611	2R_10532611_SNP [dm3] 2R_14645106_SNP [dm6]	C	A	1.888e^-4	0.52	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7732659	3R_7732659_SNP [dm3] 3R_11906937_SNP [dm6]	A	G	1.898e^-4	0.522	INTRON Cad87A
3L	9594490	3L_9594490_DEL [dm3] 3L_9601390_DEL [dm6]	ATTTCT	A	1.902e^-4	0.522	UPSTREAM CG3306 & 1 other INTERGENIC
2R	10616678	2R_10616678_SNP [dm3] 2R_14729173_SNP [dm6]	A	T	1.903e^-4	0.522	INTERGENIC
3R	17214350	3R_17214350_SNP [dm3] 3R_21388628_SNP [dm6]	T	A	1.932e^-4	0.523	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	6887682	2L_6887682_SNP [dm3] 2L_6887682_SNP [dm6]	C	A	1.933e^-4	0.523	INTRON Nlg2
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	1.935e^-4	0.523	INTERGENIC
2R	14885925	2R_14885925_SNP [dm3] 2R_18998420_SNP [dm6]	T	A	1.936e^-4	0.523	SYNONYMOUS_CODING tn INTRON tn
X	16809482	X_16809482_SNP [dm3] X_16915449_SNP [dm6]	T	G	1.943e^-4	0.523	INTRON CG4928
2L	11889601	2L_11889601_SNP [dm3] 2L_11889601_SNP [dm6]	C	A	1.944e^-4	0.523	INTRON Pde1c
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	1.946e^-4	0.523	SYNONYMOUS_CODING CG30344
3R	12742950	3R_12742950_SNP [dm3] 3R_16917228_SNP [dm6]	T	A	1.948e^-4	0.523	INTRON iab-8	TF binding site mE1_TFBS_cad
X	16002074	X_16002074_SNP [dm3] X_16108041_SNP [dm6]	A	G	1.957e^-4	0.523	INTERGENIC
3R	11737647	3R_11737647_SNP [dm3] 3R_15911925_SNP [dm6]	G	A	1.957e^-4	0.523	INTRON CG45105	TF binding site mE1_TFBS_chinmo
3L	5416455	3L_5416455_SNP [dm3] 3L_5423355_SNP [dm6]	C	G	1.964e^-4	0.523	UPSTREAM CG34391 INTERGENIC
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	1.968e^-4	0.523	INTRON salm
3R	22583989	3R_22583989_SNP [dm3] 3R_26758267_SNP [dm6]	A	G	1.969e^-4	0.523	UPSTREAM CR45562 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14022449	2R_14022449_SNP [dm3] 2R_18134944_SNP [dm6]	G	A	1.973e^-4	0.523	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9556418	2R_9556418_SNP [dm3] 2R_13668913_SNP [dm6]	C	T	1.973e^-4	0.523	SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	16032176	X_16032176_SNP [dm3] X_16138143_SNP [dm6]	C	T	1.975e^-4	0.523	INTRON disco-r
3L	9952430	3L_9952430_SNP [dm3] 3L_9959330_SNP [dm6]	G	A	1.978e^-4	0.523	INTRON CG34356
3R	16854539	3R_16854539_SNP [dm3] 3R_21028817_SNP [dm6]	A	G	1.982e^-4	0.523	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
3L	370470	3L_370470_SNP [dm3] 3L_370470_SNP [dm6]	T	C	1.982e^-4	0.523	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	16032341	X_16032341_SNP [dm3] X_16138308_SNP [dm6]	G	T	1.983e^-4	0.523	INTRON disco-r
X	6408035	X_6408035_SNP [dm3] X_6514002_SNP [dm6]	A	T	1.984e^-4	0.523	INTRON CG42340
2L	14054019	2L_14054019_SNP [dm3] 2L_14054019_SNP [dm6]	T	C	1.989e^-4	0.523	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
3L	5361486	3L_5361486_SNP [dm3] 3L_5368386_SNP [dm6]	A	C	1.990e^-4	0.523	UPSTREAM CG10635 & 1 other INTERGENIC
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	1.994e^-4	0.523	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
2L	11442585	2L_11442585_SNP [dm3] 2L_11442585_SNP [dm6]	A	G	1.997e^-4	0.523	INTRON salm
2L	8713866	2L_8713866_SNP [dm3] 2L_8713866_SNP [dm6]	G	A	1.998e^-4	0.523	INTRON raw
X	2991844	X_2991844_SNP [dm3] X_3097811_SNP [dm6]	G	T	1.999e^-4	0.523	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	2.003e^-4	0.523	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9275701	3R_9275701_SNP [dm3] 3R_13449979_SNP [dm6]	A	C	2.005e^-4	0.523	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	5155762	2L_5155762_SNP [dm3] 2L_5155762_SNP [dm6]	T	C	2.010e^-4	0.523	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11032467	3R_11032467_SNP [dm3] 3R_15206745_SNP [dm6]	C	A	2.030e^-4	0.523	UTR_3_PRIME Spn88Eb UPSTREAM Spn88Ea	TF binding site mE1_TFBS_inv
2R	8129551	2R_8129551_SNP [dm3] 2R_12242046_SNP [dm6]	C	A	2.032e^-4	0.523	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	14911090	2L_14911090_SNP [dm3] 2L_14911090_SNP [dm6]	A	G	2.034e^-4	0.523	INTRON CG42313
3R	6573840	3R_6573840_SNP [dm3] 3R_10748118_SNP [dm6]	T	G	2.038e^-4	0.523	INTRON TkR86C
3R	6540739	3R_6540739_SNP [dm3] 3R_10715017_SNP [dm6]	A	T	2.038e^-4	0.523	SYNONYMOUS_CODING CG4073
2R	3911652	2R_3911652_SNP [dm3] 2R_8024147_SNP [dm6]	G	A	2.039e^-4	0.523	EXON CR45267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	5416477	3L_5416477_SNP [dm3] 3L_5423377_SNP [dm6]	C	T	2.041e^-4	0.523	UPSTREAM CG34391 INTERGENIC
2R	9148659	2R_9148659_SNP [dm3] 2R_13261154_SNP [dm6]	A	T	2.042e^-4	0.523	INTRON CG42319
3R	14299652	3R_14299652_SNP [dm3] 3R_18473930_SNP [dm6]	C	A	2.042e^-4	0.523	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9165778	2R_9165778_SNP [dm3] 2R_13278273_SNP [dm6]	T	A	2.044e^-4	0.523	INTRON Dh31-R
3R	23208507	3R_23208507_SNP [dm3] 3R_27382785_SNP [dm6]	G	A	2.044e^-4	0.523	INTRON side	TF binding site mE1_TFBS_chinmo
3R	27526103	3R_27526103_SNP [dm3] 3R_31700381_SNP [dm6]	A	T	2.047e^-4	0.523	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	2.049e^-4	0.523	SPLICE_SITE_REGION mbc INTRON mbc
X	12706039	X_12706039_SNP [dm3] X_12812006_SNP [dm6]	G	A	2.052e^-4	0.523	INTRON Pde9
3R	10589631	3R_10589631_SNP [dm3] 3R_14763909_SNP [dm6]	C	T	2.058e^-4	0.523	INTRON jvl
X	18076606	X_18076606_SNP [dm3] X_18182573_SNP [dm6]	C	T	2.058e^-4	0.523	INTRON Frq2
3L	2105707	3L_2105707_SNP [dm3] 3L_2105707_SNP [dm6]	A	G	2.060e^-4	0.523	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11196295	2L_11196295_SNP [dm3] 2L_11196295_SNP [dm6]	C	T	2.061e^-4	0.523	INTRON Ca-beta
3L	4291306	3L_4291306_SNP [dm3] 3L_4291306_SNP [dm6]	G	A	2.062e^-4	0.523	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
X	18048238	X_18048238_SNP [dm3] X_18154205_SNP [dm6]	C	G	2.062e^-4	0.523	INTERGENIC
3L	420417	3L_420417_SNP [dm3] 3L_420417_SNP [dm6]	C	T	2.067e^-4	0.523	INTERGENIC
2L	7943538	2L_7943538_SNP [dm3] 2L_7943538_SNP [dm6]	C	A	2.069e^-4	0.523	INTRON Snoo
2L	15429541	2L_15429541_SNP [dm3] 2L_15429541_SNP [dm6]	T	A	2.070e^-4	0.523	INTERGENIC
3R	6574923	3R_6574923_SNP [dm3] 3R_10749201_SNP [dm6]	G	T	2.071e^-4	0.523	INTRON TkR86C
2R	15138063	2R_15138063_SNP [dm3] 2R_19250558_SNP [dm6]	C	T	2.071e^-4	0.523	NON_SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
3R	11574161	3R_11574161_SNP [dm3] 3R_15748439_SNP [dm6]	C	T	2.072e^-4	0.523	INTERGENIC
X	9459779	X_9459779_SNP [dm3] X_9565746_SNP [dm6]	G	T	2.072e^-4	0.523	SPLICE_SITE_REGION Cubn INTRON Cubn
3R	8775774	3R_8775774_SNP [dm3] 3R_12950052_SNP [dm6]	C	G	2.073e^-4	0.523	UTR_3_PRIME grsm
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	2.075e^-4	0.523	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	10999226	3R_10999226_SNP [dm3] 3R_15173504_SNP [dm6]	G	T	2.076e^-4	0.523	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19773950	2R_19773950_SNP [dm3] 2R_23886427_SNP [dm6]	T	A	2.085e^-4	0.525	UPSTREAM CG5597 INTERGENIC
2L	6887659	2L_6887659_SNP [dm3] 2L_6887659_SNP [dm6]	T	C	2.089e^-4	0.525	INTRON Nlg2
3L	5361485	3L_5361485_SNP [dm3] 3L_5368385_SNP [dm6]	A	C	2.095e^-4	0.526	UPSTREAM CG10635 & 1 other INTERGENIC
3R	16858718	3R_16858718_SNP [dm3] 3R_21032996_SNP [dm6]	C	T	2.099e^-4	0.526	SYNONYMOUS_CODING Dhc93AB
2R	19428955	2R_19428955_SNP [dm3] 2R_23541432_SNP [dm6]	A	G	2.113e^-4	0.527	UPSTREAM ppk3 INTRON Gr59e	TF binding site mE1_TFBS_cad
3R	22704366	3R_22704366_SNP [dm3] 3R_26878644_SNP [dm6]	G	A	2.115e^-4	0.527	INTRON CG5500 & 1 other
3R	8422552	3R_8422552_SNP [dm3] 3R_12596830_SNP [dm6]	C	G	2.116e^-4	0.527	INTERGENIC
3R	25079023	3R_25079023_SNP [dm3] 3R_29253301_SNP [dm6]	T	A	2.121e^-4	0.527	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	8473584	3L_8473584_SNP [dm3] 3L_8480484_SNP [dm6]	A	G	2.126e^-4	0.527	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	12514359	X_12514359_SNP [dm3] X_12620326_SNP [dm6]	A	G	2.126e^-4	0.527	INTRON CG11085	TF binding site BDTNP1_TFBS_sna
3R	7798152	3R_7798152_SNP [dm3] 3R_11972430_SNP [dm6]	G	T	2.127e^-4	0.527	SYNONYMOUS_CODING GC2 DOWNSTREAM GC1 & 1 other
3R	14299649	3R_14299649_SNP [dm3] 3R_18473927_SNP [dm6]	A	T	2.129e^-4	0.527	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8756850	3L_8756850_INS [dm3] 3L_8763750_INS [dm6]	C	CC	2.130e^-4	0.527	INTRON Fhos
X	9455415	X_9455415_SNP [dm3] X_9561382_SNP [dm6]	C	T	2.137e^-4	0.527	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7852242	3L_7852242_SNP [dm3] 3L_7859142_SNP [dm6]	C	T	2.137e^-4	0.527	INTRON Pdp1
X	3263675	X_3263675_SNP [dm3] X_3369642_SNP [dm6]	T	G	2.140e^-4	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15127358	2R_15127358_SNP [dm3] 2R_19239853_SNP [dm6]	G	T	2.143e^-4	0.527	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19044323	2R_19044323_SNP [dm3] 2R_23156800_SNP [dm6]	A	G	2.144e^-4	0.527	DOWNSTREAM CG13545 INTRON CG9899
3R	7633270	3R_7633270_SNP [dm3] 3R_11807548_SNP [dm6]	A	G	2.146e^-4	0.527	UPSTREAM ClC-a INTRON ClC-a
2R	3604854	2R_3604854_SNP [dm3] 2R_7717349_SNP [dm6]	A	G	2.148e^-4	0.527	UTR_3_PRIME CG18812 DOWNSTREAM CG1946 & 1 other	TF binding site mE1_TFBS_HSA
3R	12745528	3R_12745528_SNP [dm3] 3R_16919806_SNP [dm6]	T	G	2.152e^-4	0.527	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18048479	X_18048479_SNP [dm3] X_18154446_SNP [dm6]	T	A	2.156e^-4	0.527	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12106946	2L_12106946_SNP [dm3] 2L_12106946_SNP [dm6]	A	T	2.157e^-4	0.527	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
2R	8129543	2R_8129543_INS [dm3] 2R_12242038_INS [dm6]	T	TA	2.161e^-4	0.527	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	15292976	3L_15292976_SNP [dm3] 3L_15299876_SNP [dm6]	A	C	2.162e^-4	0.527	SYNONYMOUS_CODING Best4
2L	886010	2L_886010_SNP [dm3] 2L_886010_SNP [dm6]	G	A	2.175e^-4	0.528	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2175409	3R_2175409_SNP [dm3] 3R_6349687_SNP [dm6]	T	C	2.176e^-4	0.528	NON_SYNONYMOUS_CODING Hr83	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	12747534	3R_12747534_SNP [dm3] 3R_16921812_SNP [dm6]	G	T	2.181e^-4	0.528	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	15492878	2L_15492878_SNP [dm3] 2L_15492878_SNP [dm6]	G	A	2.185e^-4	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13824231	3R_13824231_SNP [dm3] 3R_17998509_SNP [dm6]	G	T	2.185e^-4	0.528	INTRON cpo
3L	11615103	3L_11615103_SNP [dm3] 3L_11622003_SNP [dm6]	C	T	2.185e^-4	0.528	INTRON CG6084	TF binding site mE1_TFBS_sens
3R	26779715	3R_26779715_SNP [dm3] 3R_30953993_SNP [dm6]	T	C	2.185e^-4	0.528	INTERGENIC
3L	3438327	3L_3438327_SNP [dm3] 3L_3438327_SNP [dm6]	C	T	2.190e^-4	0.529	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9094933	3L_9094933_SNP [dm3] 3L_9101833_SNP [dm6]	C	T	2.195e^-4	0.529	UTR_3_PRIME bol
X	2793362	X_2793362_SNP [dm3] X_2899329_SNP [dm6]	T	C	2.204e^-4	0.53	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19251673	2L_19251673_SNP [dm3] 2L_19251673_SNP [dm6]	A	T	2.207e^-4	0.53	INTERGENIC
3R	19573933	3R_19573933_SNP [dm3] 3R_23748211_SNP [dm6]	G	T	2.210e^-4	0.53	NON_SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
2L	7941895	2L_7941895_SNP [dm3] 2L_7941895_SNP [dm6]	T	C	2.213e^-4	0.53	INTRON Snoo
3R	6545649	3R_6545649_SNP [dm3] 3R_10719927_SNP [dm6]	T	C	2.213e^-4	0.53	INTERGENIC
2R	16242316	2R_16242316_SNP [dm3] 2R_20354811_SNP [dm6]	C	A	2.214e^-4	0.53	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	364815	3L_364815_SNP [dm3] 3L_364815_SNP [dm6]	A	T	2.221e^-4	0.53	NON_SYNONYMOUS_CODING CG1233 DOWNSTREAM CG13884
2R	8129546	2R_8129546_SNP [dm3] 2R_12242041_SNP [dm6]	C	T	2.223e^-4	0.53	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	11567765	3R_11567765_SNP [dm3] 3R_15742043_SNP [dm6]	G	T	2.224e^-4	0.53	INTERGENIC
3R	8349556	3R_8349556_SNP [dm3] 3R_12523834_SNP [dm6]	G	T	2.235e^-4	0.53	INTRON Octbeta3R
3R	18863778	3R_18863778_SNP [dm3] 3R_23038056_SNP [dm6]	G	A	2.238e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19206458	3R_19206458_INS [dm3] 3R_23380736_INS [dm6]	C	CCATGAC	2.239e^-4	0.53	CODON_INSERTION CG4393	TF binding site mE1_TFBS_chinmo
3L	10295796	3L_10295796_SNP [dm3] 3L_10302696_SNP [dm6]	A	T	2.240e^-4	0.53	INTERGENIC
2R	14022685	2R_14022685_SNP [dm3] 2R_18135180_SNP [dm6]	T	A	2.243e^-4	0.53	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5815192	X_5815192_SNP [dm3] X_5921159_SNP [dm6]	T	C	2.248e^-4	0.53	INTRON CG3726
3R	8707659	3R_8707659_SNP [dm3] 3R_12881937_SNP [dm6]	T	A	2.249e^-4	0.53	INTERGENIC
3R	2813642	3R_2813642_SNP [dm3] 3R_6987920_SNP [dm6]	G	A	2.252e^-4	0.53	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12742719	3R_12742719_SNP [dm3] 3R_16916997_SNP [dm6]	A	C	2.253e^-4	0.53	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	22583947	3R_22583947_SNP [dm3] 3R_26758225_SNP [dm6]	T	C	2.254e^-4	0.53	UPSTREAM CR45562 INTERGENIC
3L	5896721	3L_5896721_SNP [dm3] 3L_5903621_SNP [dm6]	T	G	2.256e^-4	0.53	SYNONYMOUS_CODING CG32413 DOWNSTREAM CG10486
3R	23185031	3R_23185031_INS [dm3] 3R_27359309_INS [dm6]	T	TGCACGCT	2.259e^-4	0.53	UPSTREAM CG42534 INTRON CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11889507	2L_11889507_SNP [dm3] 2L_11889507_SNP [dm6]	G	T	2.267e^-4	0.531	INTRON Pde1c
3R	25465510	3R_25465510_SNP [dm3] 3R_29639788_SNP [dm6]	C	T	2.273e^-4	0.532	INTRON Dop1R2
2L	14436439	2L_14436439_SNP [dm3] 2L_14436439_SNP [dm6]	T	C	2.277e^-4	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	8241341	3L_8241341_SNP [dm3] 3L_8248241_SNP [dm6]	A	G	2.278e^-4	0.532	INTRON Dscam4
3L	10177305	3L_10177305_SNP [dm3] 3L_10184205_SNP [dm6]	A	G	2.288e^-4	0.532	INTRON dpr10
3R	12742590	3R_12742590_SNP [dm3] 3R_16916868_SNP [dm6]	C	A	2.289e^-4	0.532	INTRON iab-8	TF binding site mE1_TFBS_cad
2L	1645142	2L_1645142_SNP [dm3] 2L_1645142_SNP [dm6]	A	T	2.290e^-4	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10824876	3R_10824876_SNP [dm3] 3R_14999154_SNP [dm6]	A	G	2.292e^-4	0.532	INTERGENIC
3R	26174150	3R_26174150_SNP [dm3] 3R_30348428_SNP [dm6]	C	T	2.293e^-4	0.532	INTRON hdc
X	14062152	X_14062152_SNP [dm3] X_14168119_SNP [dm6]	T	A	2.303e^-4	0.532	INTERGENIC
2L	11442524	2L_11442524_SNP [dm3] 2L_11442524_SNP [dm6]	G	T	2.304e^-4	0.532	INTRON salm
2R	7833762	2R_7833762_SNP [dm3] 2R_11946257_SNP [dm6]	C	T	2.304e^-4	0.532	INTRON CG13188
3L	9730655	3L_9730655_SNP [dm3] 3L_9737555_SNP [dm6]	C	T	2.307e^-4	0.532	INTRON CG42268
3R	8172450	3R_8172450_SNP [dm3] 3R_12346728_SNP [dm6]	A	C	2.309e^-4	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8051832	X_8051832_SNP [dm3] X_8157799_SNP [dm6]	C	G	2.310e^-4	0.532	NON_SYNONYMOUS_CODING GIIIspla2 UPSTREAM Traf6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17854690	3R_17854690_SNP [dm3] 3R_22028968_SNP [dm6]	T	C	2.320e^-4	0.534	SYNONYMOUS_CODING ND42 DOWNSTREAM CG13409	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8976179	3R_8976179_SNP [dm3] 3R_13150457_SNP [dm6]	C	G	2.325e^-4	0.534	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	13271387	3L_13271387_SNP [dm3] 3L_13278287_SNP [dm6]	C	T	2.331e^-4	0.535	UTR_3_PRIME caps
3L	364771	3L_364771_SNP [dm3] 3L_364771_SNP [dm6]	C	T	2.334e^-4	0.535	SYNONYMOUS_CODING CG1233 DOWNSTREAM CG13884
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	2.340e^-4	0.535	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
3R	2172304	3R_2172304_SNP [dm3] 3R_6346582_SNP [dm6]	A	G	2.345e^-4	0.535	SYNONYMOUS_CODING CG18048 UPSTREAM SmD2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7074297	2L_7074297_SNP [dm3] 2L_7074297_SNP [dm6]	G	T	2.347e^-4	0.535	SYNONYMOUS_CODING Pvf2
2L	11442989	2L_11442989_SNP [dm3] 2L_11442989_SNP [dm6]	T	C	2.350e^-4	0.535	INTRON salm
X	17367042	X_17367042_SNP [dm3] X_17473009_SNP [dm6]	T	C	2.354e^-4	0.535	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	2.354e^-4	0.535	UPSTREAM CG44403 INTRON CG10936
3L	5866870	3L_5866870_SNP [dm3] 3L_5873770_SNP [dm6]	T	A	2.355e^-4	0.535	NON_SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	2.356e^-4	0.535	INTRON Ref2
3L	5881019	3L_5881019_SNP [dm3] 3L_5887919_SNP [dm6]	T	A	2.361e^-4	0.535	INTERGENIC
2L	14958642	2L_14958642_SNP [dm3] 2L_14958642_SNP [dm6]	T	C	2.379e^-4	0.538	INTRON CG42313
3R	25192514	3R_25192514_SNP [dm3] 3R_29366792_SNP [dm6]	A	G	2.381e^-4	0.538	INTERGENIC
X	8208722	X_8208722_SNP [dm3] X_8314689_SNP [dm6]	A	C	2.383e^-4	0.538	INTRON nAChRalpha3
3L	5416488	3L_5416488_SNP [dm3] 3L_5423388_SNP [dm6]	C	T	2.389e^-4	0.538	UPSTREAM CG34391 INTERGENIC
3R	6547508	3R_6547508_SNP [dm3] 3R_10721786_SNP [dm6]	A	C	2.390e^-4	0.538	INTERGENIC
2L	7072836	2L_7072836_SNP [dm3] 2L_7072836_SNP [dm6]	G	A	2.390e^-4	0.538	INTRON Pvf2
3L	9410622	3L_9410622_SNP [dm3] 3L_9417522_SNP [dm6]	G	A	2.397e^-4	0.538	UPSTREAM CG3982 INTRON CG3967
X	16868214	X_16868214_SNP [dm3] X_16974181_SNP [dm6]	T	C	2.402e^-4	0.538	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	14512784	3R_14512784_DEL [dm3] 3R_18687062_DEL [dm6]	GGGATTCACAG...	G	2.403e^-4	0.538	DOWNSTREAM Muc91C & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	14513496	3R_14513496_SNP [dm3] 3R_18687774_SNP [dm6]	A	T	2.403e^-4	0.538	UTR_3_PRIME Muc91C	TF binding site mE1_TFBS_cad
3R	16145147	3R_16145147_SNP [dm3] 3R_20319425_SNP [dm6]	G	A	2.404e^-4	0.538	INTRON CG42668
X	8201673	X_8201673_SNP [dm3] X_8307640_SNP [dm6]	C	T	2.406e^-4	0.538	INTRON nAChRalpha3
2L	11442523	2L_11442523_SNP [dm3] 2L_11442523_SNP [dm6]	C	T	2.414e^-4	0.538	INTRON salm
2R	3859921	2R_3859921_SNP [dm3] 2R_7972416_SNP [dm6]	A	G	2.418e^-4	0.538	START_GAINED CSN4 UTR_5_PRIME CSN4 UPSTREAM CSN4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6406961	2R_6406961_SNP [dm3] 2R_10519456_SNP [dm6]	C	T	2.424e^-4	0.538	DOWNSTREAM lola INTRON lola
3R	26777157	3R_26777157_SNP [dm3] 3R_30951435_SNP [dm6]	G	T	2.424e^-4	0.538	INTERGENIC
3R	7774132	3R_7774132_SNP [dm3] 3R_11948410_SNP [dm6]	A	G	2.428e^-4	0.538	INTRON Cad87A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	2.428e^-4	0.538	INTRON grsm
3L	12813725	3L_12813725_SNP [dm3] 3L_12820625_SNP [dm6]	C	G	2.433e^-4	0.538	NON_SYNONYMOUS_CODING CG42588
2R	19428958	2R_19428958_SNP [dm3] 2R_23541435_SNP [dm6]	A	G	2.434e^-4	0.538	UPSTREAM ppk3 INTRON Gr59e	TF binding site mE1_TFBS_cad
3L	5416514	3L_5416514_SNP [dm3] 3L_5423414_SNP [dm6]	G	A	2.436e^-4	0.538	UPSTREAM CG34391 INTERGENIC
3L	420809	3L_420809_SNP [dm3] 3L_420809_SNP [dm6]	C	T	2.444e^-4	0.538	INTERGENIC
2L	8501477	2L_8501477_SNP [dm3] 2L_8501477_SNP [dm6]	G	C	2.445e^-4	0.538	INTRON Dh31
3R	22829384	3R_22829384_SNP [dm3] 3R_27003662_SNP [dm6]	C	A	2.446e^-4	0.538	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8876531	2R_8876531_SNP [dm3] 2R_12989026_SNP [dm6]	A	C	2.447e^-4	0.538	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9165065	2R_9165065_SNP [dm3] 2R_13277560_SNP [dm6]	T	C	2.448e^-4	0.538	NON_SYNONYMOUS_CODING Dh31-R
3L	3446384	3L_3446384_SNP [dm3] 3L_3446384_SNP [dm6]	C	T	2.451e^-4	0.538	INTRON eIF5B
3R	13818341	3R_13818341_SNP [dm3] 3R_17992619_SNP [dm6]	C	T	2.453e^-4	0.538	INTRON cpo
2R	14023413	2R_14023413_SNP [dm3] 2R_18135908_SNP [dm6]	C	A	2.456e^-4	0.538	UTR_5_PRIME Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19429469	2R_19429469_SNP [dm3] 2R_23541946_SNP [dm6]	A	T	2.459e^-4	0.538	NON_SYNONYMOUS_CODING Gr59e UPSTREAM Gr59f	TF binding site mE1_TFBS_cad
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	2.465e^-4	0.539	INTRON CG42313
3R	8757359	3R_8757359_SNP [dm3] 3R_12931637_SNP [dm6]	G	A	2.468e^-4	0.539	NON_SYNONYMOUS_CODING beat-Vb UPSTREAM CR44236
X	9455690	X_9455690_SNP [dm3] X_9561657_SNP [dm6]	C	T	2.470e^-4	0.539	INTRON Cubn	TF binding site mE1_TFBS_chinmo
3R	8501625	3R_8501625_SNP [dm3] 3R_12675903_SNP [dm6]	C	T	2.485e^-4	0.541	SYNONYMOUS_CODING CG6188 DOWNSTREAM CG43630 & 1 other	TF binding site mE1_TFBS_cad
3L	18473911	3L_18473911_DEL [dm3] 3L_18480811_DEL [dm6]	TT	T	2.492e^-4	0.542	INTERGENIC
3R	7762323	3R_7762323_SNP [dm3] 3R_11936601_SNP [dm6]	A	C	2.505e^-4	0.544	INTRON Cad87A
X	9459793	X_9459793_INS [dm3] X_9565760_INS [dm6]	G	GTGCACA	2.510e^-4	0.544	INTRON Cubn
3L	3302059	3L_3302059_SNP [dm3] 3L_3302059_SNP [dm6]	T	C	2.512e^-4	0.544	UPSTREAM CG14968 INTRON CG14968
2R	7794507	2R_7794507_SNP [dm3] 2R_11907002_SNP [dm6]	C	T	2.516e^-4	0.544	INTRON CG13183
3R	9218390	3R_9218390_SNP [dm3] 3R_13392668_SNP [dm6]	T	C	2.517e^-4	0.544	INTRON CCHa2
3R	25192528	3R_25192528_SNP [dm3] 3R_29366806_SNP [dm6]	C	A	2.519e^-4	0.544	INTERGENIC
3R	22703858	3R_22703858_SNP [dm3] 3R_26878136_SNP [dm6]	C	G	2.519e^-4	0.544	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
2R	18662937	2R_18662937_SNP [dm3] 2R_22775432_SNP [dm6]	G	A	2.521e^-4	0.544	INTRON CG42260
2L	8583445	2L_8583445_SNP [dm3] 2L_8583445_SNP [dm6]	A	T	2.527e^-4	0.544	INTRON Sema-1a
X	16729678	X_16729678_SNP [dm3] X_16835645_SNP [dm6]	C	A	2.529e^-4	0.544	UPSTREAM CG13004 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7575789	X_7575789_SNP [dm3] X_7681756_SNP [dm6]	A	G	2.532e^-4	0.544	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	15779124	3R_15779124_SNP [dm3] 3R_19953402_SNP [dm6]	T	A	2.534e^-4	0.544	INTRON Hs6st
2L	1628335	2L_1628335_SNP [dm3] 2L_1628335_SNP [dm6]	C	G	2.546e^-4	0.545	INTERGENIC
3R	13464078	3R_13464078_SNP [dm3] 3R_17638356_SNP [dm6]	G	T	2.549e^-4	0.545	UPSTREAM CR45222 INTRON CG43175
3L	16330561	3L_16330561_SNP [dm3] 3L_16337461_SNP [dm6]	T	C	2.551e^-4	0.545	INTERGENIC
2R	15172241	2R_15172241_SNP [dm3] 2R_19284736_SNP [dm6]	G	A	2.556e^-4	0.545	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
3R	6545196	3R_6545196_DEL [dm3] 3R_10719474_DEL [dm6]	CTTCTCC	C	2.556e^-4	0.545	INTERGENIC
3L	12814967	3L_12814967_SNP [dm3] 3L_12821867_SNP [dm6]	T	C	2.567e^-4	0.545	SPLICE_SITE_REGION CG42588 SYNONYMOUS_CODING CG42588
2R	7728743	2R_7728743_SNP [dm3] 2R_11841238_SNP [dm6]	G	A	2.567e^-4	0.545	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
3L	5416402	3L_5416402_SNP [dm3] 3L_5423302_SNP [dm6]	G	T	2.569e^-4	0.545	UPSTREAM CG34391 INTERGENIC
X	5827053	X_5827053_DEL [dm3] X_5933020_DEL [dm6]	AACAAAAA	A	2.577e^-4	0.545	INTRON CG3726
2R	8201896	2R_8201896_SNP [dm3] 2R_12314391_SNP [dm6]	A	C	2.580e^-4	0.545	DOWNSTREAM CG30203 INTRON CG30046
2R	13511238	2R_13511238_SNP [dm3] 2R_17623733_SNP [dm6]	G	A	2.580e^-4	0.545	INTRON CG10936
3R	16900791	3R_16900791_SNP [dm3] 3R_21075069_SNP [dm6]	C	T	2.580e^-4	0.545	INTRON dmrt93B
3R	7746312	3R_7746312_SNP [dm3] 3R_11920590_SNP [dm6]	G	A	2.580e^-4	0.545	INTRON Cad87A
3R	8933946	3R_8933946_SNP [dm3] 3R_13108224_SNP [dm6]	G	C	2.582e^-4	0.545	INTRON timeout	TF binding site mE1_TFBS_inv
3R	6547365	3R_6547365_SNP [dm3] 3R_10721643_SNP [dm6]	A	G	2.586e^-4	0.545	INTERGENIC
3R	14299653	3R_14299653_SNP [dm3] 3R_18473931_SNP [dm6]	A	C	2.591e^-4	0.545	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7633235	3R_7633235_SNP [dm3] 3R_11807513_SNP [dm6]	G	A	2.592e^-4	0.545	UPSTREAM ClC-a INTRON ClC-a
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	2.594e^-4	0.545	INTRON salm
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	2.594e^-4	0.545	INTERGENIC
3L	13188081	3L_13188081_SNP [dm3] 3L_13194981_SNP [dm6]	C	A	2.598e^-4	0.545	INTERGENIC
2R	5024419	2R_5024419_INS [dm3] 2R_9136914_INS [dm6]	A	AAGCGAA	2.605e^-4	0.545	INTRON alc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9971375	2R_9971375_SNP [dm3] 2R_14083870_SNP [dm6]	G	A	2.611e^-4	0.545	INTRON Prosap
3R	14511634	3R_14511634_DEL [dm3] 3R_18685912_DEL [dm6]	AT	A	2.615e^-4	0.545	UTR_3_PRIME CG7708 DOWNSTREAM CG7708
3R	7633251	3R_7633251_SNP [dm3] 3R_11807529_SNP [dm6]	T	A	2.616e^-4	0.545	UPSTREAM ClC-a INTRON ClC-a
2R	14020811	2R_14020811_SNP [dm3] 2R_18133306_SNP [dm6]	A	C	2.620e^-4	0.545	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	7789533	2L_7789533_SNP [dm3] 2L_7789533_SNP [dm6]	A	G	2.626e^-4	0.545	INTRON CG7149
3L	5883672	3L_5883672_SNP [dm3] 3L_5890572_SNP [dm6]	T	C	2.627e^-4	0.545	INTERGENIC
3R	14162545	3R_14162545_SNP [dm3] 3R_18336823_SNP [dm6]	A	C	2.628e^-4	0.545	INTRON CG15803
2R	8173240	2R_8173240_SNP [dm3] 2R_12285735_SNP [dm6]	T	A	2.628e^-4	0.545	UPSTREAM CG42700 INTRON CG42700
2L	11442495	2L_11442495_SNP [dm3] 2L_11442495_SNP [dm6]	T	C	2.631e^-4	0.545	INTRON salm
3L	2796298	3L_2796298_SNP [dm3] 3L_2796298_SNP [dm6]	C	T	2.636e^-4	0.545	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12736352	3R_12736352_SNP [dm3] 3R_16910630_SNP [dm6]	T	G	2.639e^-4	0.545	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2R	7728756	2R_7728756_SNP [dm3] 2R_11841251_SNP [dm6]	A	G	2.640e^-4	0.545	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
3R	22048371	3R_22048371_SNP [dm3] 3R_26222649_SNP [dm6]	G	C	2.640e^-4	0.545	INTERGENIC
X	7575865	X_7575865_DEL [dm3] X_7681832_DEL [dm6]	GG	G	2.643e^-4	0.545	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	13329976	3R_13329976_SNP [dm3] 3R_17504254_SNP [dm6]	A	C	2.648e^-4	0.546	INTRON Dscam3
3R	12697930	3R_12697930_SNP [dm3] 3R_16872208_SNP [dm6]	G	A	2.652e^-4	0.546	INTRON iab-8
3L	5088289	3L_5088289_SNP [dm3] 3L_5088289_SNP [dm6]	G	A	2.658e^-4	0.546	INTERGENIC
2R	14505099	2R_14505099_SNP [dm3] 2R_18617594_SNP [dm6]	G	T	2.659e^-4	0.546	SYNONYMOUS_CODING CG5493 UTR_3_PRIME CG5327
3R	26566963	3R_26566963_SNP [dm3] 3R_30741241_SNP [dm6]	G	T	2.679e^-4	0.548	INTERGENIC
2R	15171997	2R_15171997_SNP [dm3] 2R_19284492_SNP [dm6]	T	G	2.683e^-4	0.548	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11600676	3R_11600676_SNP [dm3] 3R_15774954_SNP [dm6]	A	C	2.684e^-4	0.548	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_inv
3R	11600637	3R_11600637_SNP [dm3] 3R_15774915_SNP [dm6]	T	A	2.684e^-4	0.548	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_inv
3R	12678023	3R_12678023_SNP [dm3] 3R_16852301_SNP [dm6]	T	G	2.685e^-4	0.548	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6540150	3R_6540150_SNP [dm3] 3R_10714428_SNP [dm6]	T	A	2.687e^-4	0.548	UPSTREAM CG4073 INTERGENIC
3L	7851754	3L_7851754_SNP [dm3] 3L_7858654_SNP [dm6]	A	G	2.689e^-4	0.548	INTRON Pdp1	TF binding site mE1_TFBS_HSA
2L	860839	2L_860839_SNP [dm3] 2L_860839_SNP [dm6]	T	C	2.696e^-4	0.549	SYNONYMOUS_CODING CG13950	TF binding site mE1_TFBS_chinmo
X	19341618	X_19341618_INS [dm3] X_19447585_INS [dm6]	T	TA	2.702e^-4	0.549	INTRON kek5
2R	20272734	2R_20272734_SNP [dm3] 2R_24385211_SNP [dm6]	A	C	2.704e^-4	0.549	INTRON mAChR-A	TF binding site mE1_TFBS_cad
2L	12515452	2L_12515452_SNP [dm3] 2L_12515452_SNP [dm6]	A	C	2.705e^-4	0.549	INTRON bun
X	8201646	X_8201646_SNP [dm3] X_8307613_SNP [dm6]	T	A	2.712e^-4	0.549	INTRON nAChRalpha3
2R	14022708	2R_14022708_SNP [dm3] 2R_18135203_SNP [dm6]	A	G	2.714e^-4	0.549	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	2.714e^-4	0.549	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	3362324	2R_3362324_SNP [dm3] 2R_7474819_SNP [dm6]	C	T	2.720e^-4	0.55	UPSTREAM Aldh-III INTRON Aldh-III	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
2L	9364929	2L_9364929_SNP [dm3] 2L_9364929_SNP [dm6]	A	T	2.727e^-4	0.551	EXON CR43404
X	16883382	X_16883382_SNP [dm3] X_16989349_SNP [dm6]	T	C	2.735e^-4	0.551	INTRON CG45002
3L	10295960	3L_10295960_SNP [dm3] 3L_10302860_SNP [dm6]	T	G	2.737e^-4	0.551	INTERGENIC
3L	15292667	3L_15292667_SNP [dm3] 3L_15299567_SNP [dm6]	C	T	2.742e^-4	0.551	SYNONYMOUS_CODING Best4
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	2.743e^-4	0.551	INTRON grsm
3R	8482527	3R_8482527_SNP [dm3] 3R_12656805_SNP [dm6]	T	G	2.746e^-4	0.551	UTR_5_PRIME CG6225
3L	18473886	3L_18473886_SNP [dm3] 3L_18480786_SNP [dm6]	A	C	2.747e^-4	0.551	INTERGENIC
2L	15629477	2L_15629477_SNP [dm3] 2L_15629477_SNP [dm6]	T	A	2.753e^-4	0.552	SYNONYMOUS_CODING CG7631 UPSTREAM CG18480
3R	8487550	3R_8487550_SNP [dm3] 3R_12661828_SNP [dm6]	T	C	2.760e^-4	0.552	DOWNSTREAM CG6225 EXON CR45586	TF binding site mE1_TFBS_chinmo
X	16032164	X_16032164_SNP [dm3] X_16138131_SNP [dm6]	A	C	2.766e^-4	0.552	INTRON disco-r
3R	23075748	3R_23075748_SNP [dm3] 3R_27250026_SNP [dm6]	T	C	2.766e^-4	0.552	INTRON CG5987	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16144918	3R_16144918_SNP [dm3] 3R_20319196_SNP [dm6]	C	T	2.767e^-4	0.552	INTRON CG42668
3R	17670870	3R_17670870_SNP [dm3] 3R_21845148_SNP [dm6]	A	T	2.777e^-4	0.553	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
2L	11468265	2L_11468265_SNP [dm3] 2L_11468265_SNP [dm6]	C	G	2.786e^-4	0.553	INTERGENIC
3L	14114160	3L_14114160_SNP [dm3] 3L_14121060_SNP [dm6]	T	C	2.787e^-4	0.553	INTRON Sox21b
2R	16521148	2R_16521148_SNP [dm3] 2R_20633643_SNP [dm6]	G	A	2.791e^-4	0.553	UPSTREAM Rcd6 DOWNSTREAM rig INTERGENIC
3R	8765615	3R_8765615_SNP [dm3] 3R_12939893_SNP [dm6]	C	T	2.793e^-4	0.553	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19265034	2R_19265034_SNP [dm3] 2R_23377511_SNP [dm6]	A	G	2.793e^-4	0.553	UPSTREAM Golgin245 DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6559060	3R_6559060_SNP [dm3] 3R_10733338_SNP [dm6]	T	C	2.799e^-4	0.553	INTERGENIC
3R	14042988	3R_14042988_SNP [dm3] 3R_18217266_SNP [dm6]	T	C	2.802e^-4	0.553	SYNONYMOUS_CODING CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12742561	3R_12742561_SNP [dm3] 3R_16916839_SNP [dm6]	A	G	2.807e^-4	0.553	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	7798413	3R_7798413_SNP [dm3] 3R_11972691_SNP [dm6]	C	T	2.810e^-4	0.553	SYNONYMOUS_CODING GC2 DOWNSTREAM Tango9
3R	9027169	3R_9027169_SNP [dm3] 3R_13201447_SNP [dm6]	G	A	2.818e^-4	0.553	INTERGENIC
2L	3885408	2L_3885408_SNP [dm3] 2L_3885408_SNP [dm6]	A	C	2.820e^-4	0.553	INTRON capu	TF binding site mE1_TFBS_bab1
2R	5038670	2R_5038670_SNP [dm3] 2R_9151165_SNP [dm6]	T	A	2.820e^-4	0.553	NON_SYNONYMOUS_CODING CG30345	TF binding site mE1_TFBS_sens
X	8727887	X_8727887_SNP [dm3] X_8833854_SNP [dm6]	T	A	2.823e^-4	0.553	INTERGENIC
3L	2915034	3L_2915034_SNP [dm3] 3L_2915034_SNP [dm6]	T	C	2.828e^-4	0.553	UTR_3_PRIME CG9970 INTRON Shab
3R	8782490	3R_8782490_SNP [dm3] 3R_12956768_SNP [dm6]	A	T	2.828e^-4	0.553	INTRON grsm
3R	26779791	3R_26779791_SNP [dm3] 3R_30954069_SNP [dm6]	G	T	2.834e^-4	0.553	INTERGENIC
3L	3445803	3L_3445803_SNP [dm3] 3L_3445803_SNP [dm6]	G	C	2.836e^-4	0.553	INTRON eIF5B
3L	9858621	3L_9858621_DEL [dm3] 3L_9865521_DEL [dm6]	CAG	C	2.847e^-4	0.553	INTRON CG8108	TF binding site BDTNP1_TFBS_dl
3R	6573765	3R_6573765_SNP [dm3] 3R_10748043_SNP [dm6]	C	A	2.847e^-4	0.553	INTRON TkR86C
3L	18382524	3L_18382524_SNP [dm3] 3L_18389424_SNP [dm6]	T	C	2.848e^-4	0.553	INTERGENIC
3R	2323740	3R_2323740_SNP [dm3] 3R_6498018_SNP [dm6]	C	A	2.850e^-4	0.553	INTERGENIC
2L	12118234	2L_12118234_SNP [dm3] 2L_12118234_SNP [dm6]	T	C	2.850e^-4	0.553	INTRON CG17211
2R	16442050	2R_16442050_SNP [dm3] 2R_20554545_SNP [dm6]	C	A	2.853e^-4	0.553	INTERGENIC
2R	15174877	2R_15174877_SNP [dm3] 2R_19287372_SNP [dm6]	T	A	2.860e^-4	0.553	UPSTREAM CG10474 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20294312	2R_20294312_SNP [dm3] 2R_24406789_SNP [dm6]	G	A	2.865e^-4	0.553	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
2R	7594952	2R_7594952_SNP [dm3] 2R_11707447_SNP [dm6]	A	C	2.868e^-4	0.553	INTERGENIC
2R	13546916	2R_13546916_SNP [dm3] 2R_17659411_SNP [dm6]	A	C	2.872e^-4	0.553	INTRON CCHa1-R
3R	23700250	3R_23700250_SNP [dm3] 3R_27874528_SNP [dm6]	A	T	2.874e^-4	0.553	INTRON CG34353
X	9423293	X_9423293_SNP [dm3] X_9529260_SNP [dm6]	T	A	2.878e^-4	0.553	INTRON CG32700
3R	23886130	3R_23886130_SNP [dm3] 3R_28060408_SNP [dm6]	C	A	2.879e^-4	0.553	INTRON CG34362
3R	5305591	3R_5305591_SNP [dm3] 3R_9479869_SNP [dm6]	G	T	2.879e^-4	0.553	INTRON CG16779
3R	6752135	3R_6752135_SNP [dm3] 3R_10926413_SNP [dm6]	C	A	2.881e^-4	0.553	INTERGENIC
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	2.882e^-4	0.553	INTERGENIC
3R	20913826	3R_20913826_SNP [dm3] 3R_25088104_SNP [dm6]	A	T	2.883e^-4	0.553	INTERGENIC
2R	19416177	2R_19416177_SNP [dm3] 2R_23528654_SNP [dm6]	G	T	2.884e^-4	0.553	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2R	14020819	2R_14020819_DEL [dm3] 2R_18133314_DEL [dm6]	CGTTTTA	C	2.892e^-4	0.553	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	14578855	3L_14578855_SNP [dm3] 3L_14585755_SNP [dm6]	G	A	2.898e^-4	0.553	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12753398	3R_12753398_SNP [dm3] 3R_16927676_SNP [dm6]	T	C	2.900e^-4	0.553	UTR_3_PRIME Abd-B
3R	11600008	3R_11600008_SNP [dm3] 3R_15774286_SNP [dm6]	T	A	2.903e^-4	0.553	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
3R	26779818	3R_26779818_SNP [dm3] 3R_30954096_SNP [dm6]	T	G	2.903e^-4	0.553	INTERGENIC
2L	14914097	2L_14914097_SNP [dm3] 2L_14914097_SNP [dm6]	C	A	2.906e^-4	0.553	INTRON CG42313
3R	8198819	3R_8198819_INS [dm3] 3R_12373097_INS [dm6]	C	CCTATACTATC...	2.909e^-4	0.553	UTR_5_PRIME GstD3 DOWNSTREAM GstD2
3R	26454700	3R_26454700_SNP [dm3] 3R_30628978_SNP [dm6]	T	C	2.910e^-4	0.553	UTR_5_PRIME CG2267
3L	5361554	3L_5361554_SNP [dm3] 3L_5368454_SNP [dm6]	A	T	2.911e^-4	0.553	UPSTREAM CG10635 & 1 other INTERGENIC
2R	15172026	2R_15172026_SNP [dm3] 2R_19284521_SNP [dm6]	T	A	2.914e^-4	0.553	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13045297	3R_13045297_SNP [dm3] 3R_17219575_SNP [dm6]	G	C	2.914e^-4	0.553	INTRON CG31262
3L	7870159	3L_7870159_SNP [dm3] 3L_7877059_SNP [dm6]	C	T	2.920e^-4	0.553	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15809934	2L_15809934_SNP [dm3] 2L_15809934_SNP [dm6]	C	A	2.923e^-4	0.553	DOWNSTREAM CG42876 EXON CR44602
3R	21836042	3R_21836042_SNP [dm3] 3R_26010320_SNP [dm6]	T	C	2.928e^-4	0.553	UPSTREAM E_spl_malpha-BFM INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	12753370	3R_12753370_INS [dm3] 3R_16927648_INS [dm6]	G	GGCAAAAA	2.929e^-4	0.553	UTR_3_PRIME Abd-B DOWNSTREAM Abd-B
X	16809009	X_16809009_SNP [dm3] X_16914976_SNP [dm6]	G	A	2.932e^-4	0.553	INTRON CG4928
3R	2968397	3R_2968397_SNP [dm3] 3R_7142675_SNP [dm6]	G	A	2.936e^-4	0.553	UPSTREAM CR42738 DOWNSTREAM Fer1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8757018	3L_8757018_DEL [dm3] 3L_8763918_DEL [dm6]	AT	A	2.938e^-4	0.553	INTRON Fhos
X	7778980	X_7778980_SNP [dm3] X_7884947_SNP [dm6]	T	A	2.940e^-4	0.553	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3L	15190922	3L_15190922_SNP [dm3] 3L_15197822_SNP [dm6]	G	A	2.941e^-4	0.553	INTERGENIC
2L	19477988	2L_19477988_INS [dm3] 2L_19477988_INS [dm6]	T	TGCT	2.955e^-4	0.553	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1885473	3L_1885473_SNP [dm3] 3L_1885473_SNP [dm6]	A	G	2.956e^-4	0.553	UPSTREAM Tmhs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8822435	3R_8822435_SNP [dm3] 3R_12996713_SNP [dm6]	C	T	2.963e^-4	0.553	SYNONYMOUS_CODING CG7488 DOWNSTREAM CG17327 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8988825	3R_8988825_SNP [dm3] 3R_13163103_SNP [dm6]	A	C	2.966e^-4	0.553	NON_SYNONYMOUS_CODING timeout

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.066e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.085588
In_3R_K	0.001156

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6985	0.0954
In_3R_K	16.6831	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1877 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.745e^-10	3.272e^-4	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	1.069e^-9	0.001	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.236e^-8	0.007	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	1.418e^-8	0.007	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	6.190e^-8	0.023	DOWNSTREAM CG18109 INTERGENIC
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	9.725e^-8	0.03	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	1.371e^-7	0.037	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	1.860e^-7	0.044	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	5.578e^-7	0.096	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	5.741e^-7	0.096	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	5.776e^-7	0.096	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	6.170e^-7	0.096	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	7.391e^-7	0.107	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24848600	3R_24848600_SNP [dm3] 3R_29022878_SNP [dm6]	T	G	9.389e^-7	0.116	UPSTREAM CR44264 EXON CR45567
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	9.593e^-7	0.116	INTERGENIC
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	1.032e^-6	0.116	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	1.082e^-6	0.116	UPSTREAM CR44264 EXON CR45567
2L	581350	2L_581350_SNP [dm3] 2L_581350_SNP [dm6]	C	A	1.144e^-6	0.116	INTERGENIC
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	1.206e^-6	0.116	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2087403	2L_2087403_SNP [dm3] 2L_2087403_SNP [dm6]	A	T	1.263e^-6	0.116	INTRON dpr3
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.309e^-6	0.116	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	1.402e^-6	0.116	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.419e^-6	0.116	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	1.667e^-6	0.118	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	1.667e^-6	0.118	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	1.676e^-6	0.118	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	1.714e^-6	0.118	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	1.765e^-6	0.118	INTRON ush	regulatory region REDfly_CRMs
3R	26174403	3R_26174403_SNP [dm3] 3R_30348681_SNP [dm6]	T	G	1.838e^-6	0.119	INTRON hdc
2L	2087400	2L_2087400_SNP [dm3] 2L_2087400_SNP [dm6]	T	A	2.154e^-6	0.135	INTRON dpr3
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	2.236e^-6	0.135	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	2.755e^-6	0.161	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	3.061e^-6	0.174	INTERGENIC
3R	23979214	3R_23979214_SNP [dm3] 3R_28153492_SNP [dm6]	C	T	3.412e^-6	0.188	INTRON CG34354
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	3.537e^-6	0.19	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	3.908e^-6	0.203	INTERGENIC
2L	2087437	2L_2087437_SNP [dm3] 2L_2087437_SNP [dm6]	G	A	4.030e^-6	0.203	INTRON dpr3
2L	528469	2L_528469_SNP [dm3] 2L_528469_SNP [dm6]	G	T	4.106e^-6	0.203	INTRON ush	regulatory region REDfly_CRMs
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	4.411e^-6	0.212	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2087424	2L_2087424_SNP [dm3] 2L_2087424_SNP [dm6]	T	A	4.597e^-6	0.216	INTRON dpr3
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	4.932e^-6	0.223	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	5.118e^-6	0.223	SYNONYMOUS_CODING pps
2R	1699590	2R_1699590_SNP [dm3] 2R_5812085_SNP [dm6]	G	A	5.138e^-6	0.223	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12452771	3R_12452771_INS [dm3] 3R_16627049_INS [dm6]	C	CAGATGGCTTAGGCAC...	5.225e^-6	0.223	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3346327	2R_3346327_SNP [dm3] 2R_7458822_SNP [dm6]	A	G	5.629e^-6	0.233	START_GAINED Inos UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	5.706e^-6	0.233	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8735914	2R_8735914_SNP [dm3] 2R_12848409_SNP [dm6]	C	A	6.422e^-6	0.247	SYNONYMOUS_CODING CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2R	8736471	2R_8736471_SNP [dm3] 2R_12848966_SNP [dm6]	C	G	6.513e^-6	0.247	UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2L	2087442	2L_2087442_SNP [dm3] 2L_2087442_SNP [dm6]	T	G	6.535e^-6	0.247	INTRON dpr3
2L	2087373	2L_2087373_SNP [dm3] 2L_2087373_SNP [dm6]	A	G	6.582e^-6	0.247	INTRON dpr3
3R	8213561	3R_8213561_SNP [dm3] 3R_12387839_SNP [dm6]	C	A	6.846e^-6	0.252	SYNONYMOUS_CODING CG33098 UTR_5_PRIME CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
2R	19108117	2R_19108117_SNP [dm3] 2R_23220594_SNP [dm6]	G	A	7.627e^-6	0.267	INTERGENIC
3R	23237682	3R_23237682_SNP [dm3] 3R_27411960_SNP [dm6]	T	C	7.647e^-6	0.267	INTRON side
2L	2087422	2L_2087422_SNP [dm3] 2L_2087422_SNP [dm6]	A	T	7.688e^-6	0.267	INTRON dpr3
3R	8210917	3R_8210917_SNP [dm3] 3R_12385195_SNP [dm6]	T	G	8.592e^-6	0.293	INTRON GstD11
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	9.285e^-6	0.311	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	1.052e^-5	0.345	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2L	7512982	2L_7512982_SNP [dm3] 2L_7512982_SNP [dm6]	C	T	1.070e^-5	0.345	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	1.086e^-5	0.345	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8237112	3R_8237112_SNP [dm3] 3R_12411390_SNP [dm6]	C	A	1.112e^-5	0.348	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6406961	2R_6406961_SNP [dm3] 2R_10519456_SNP [dm6]	C	T	1.286e^-5	0.395	DOWNSTREAM lola INTRON lola
3R	8560530	3R_8560530_SNP [dm3] 3R_12734808_SNP [dm6]	A	G	1.383e^-5	0.419	INTERGENIC
3R	8202519	3R_8202519_SNP [dm3] 3R_12376797_SNP [dm6]	A	T	1.427e^-5	0.425	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	1.458e^-5	0.426	INTRON A2bp1
3R	8213528	3R_8213528_SNP [dm3] 3R_12387806_SNP [dm6]	T	C	1.476e^-5	0.426	SYNONYMOUS_CODING CG33098 UPSTREAM CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	1.590e^-5	0.445	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
2L	6490368	2L_6490368_SNP [dm3] 2L_6490368_SNP [dm6]	G	A	1.594e^-5	0.445	SYNONYMOUS_CODING CG9548 UPSTREAM CG31638 DOWNSTREAM epsilonCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16803137	X_16803137_SNP [dm3] X_16909104_SNP [dm6]	T	C	1.617e^-5	0.445	INTRON CR44754
2R	3345019	2R_3345019_SNP [dm3] 2R_7457514_SNP [dm6]	T	G	1.636e^-5	0.445	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7512984	2L_7512984_SNP [dm3] 2L_7512984_SNP [dm6]	C	T	1.686e^-5	0.446	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	1.687e^-5	0.446	INTERGENIC
2R	8736836	2R_8736836_SNP [dm3] 2R_12849331_SNP [dm6]	C	A	1.744e^-5	0.454	UPSTREAM CG30486 DOWNSTREAM CG17574 & 1 other INTERGENIC
3L	13393927	3L_13393927_SNP [dm3] 3L_13400827_SNP [dm6]	C	A	1.792e^-5	0.46	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	1.903e^-5	0.482	INTERGENIC
2L	7511109	2L_7511109_SNP [dm3] 2L_7511109_SNP [dm6]	G	A	1.932e^-5	0.483	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6060070	3L_6060070_SNP [dm3] 3L_6066970_SNP [dm6]	C	T	2.014e^-5	0.497	INTRON CG42269
3R	22325020	3R_22325020_SNP [dm3] 3R_26499298_SNP [dm6]	A	G	2.042e^-5	0.497	INTRON plum	TF binding site BDTNP1_TFBS_twi
2R	12172662	2R_12172662_SNP [dm3] 2R_16285157_SNP [dm6]	C	G	2.071e^-5	0.498	SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728	TF binding site mE1_TFBS_sens
3R	13790848	3R_13790848_SNP [dm3] 3R_17965126_SNP [dm6]	A	G	2.102e^-5	0.499	INTRON cpo
3L	6098363	3L_6098363_SNP [dm3] 3L_6105263_SNP [dm6]	T	A	2.134e^-5	0.499	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2764038	3L_2764038_SNP [dm3] 3L_2764038_SNP [dm6]	G	C	2.177e^-5	0.499	INTRON Mrtf
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	2.180e^-5	0.499	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6098371	3L_6098371_SNP [dm3] 3L_6105271_SNP [dm6]	T	G	2.214e^-5	0.5	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6098370	3L_6098370_SNP [dm3] 3L_6105270_SNP [dm6]	A	T	2.308e^-5	0.515	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16128695	2R_16128695_SNP [dm3] 2R_20241190_SNP [dm6]	T	C	2.366e^-5	0.521	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2R	3349315	2R_3349315_SNP [dm3] 2R_7461810_SNP [dm6]	A	G	2.413e^-5	0.521	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2R	17024763	2R_17024763_SNP [dm3] 2R_21137258_SNP [dm6]	T	A	2.416e^-5	0.521	INTRON Magi
2L	18815170	2L_18815170_SNP [dm3] 2L_18815170_SNP [dm6]	C	G	2.463e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11780195	3L_11780195_SNP [dm3] 3L_11787095_SNP [dm6]	C	T	2.479e^-5	0.522	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	2.601e^-5	0.542	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22275373	3R_22275373_SNP [dm3] 3R_26449651_SNP [dm6]	A	T	2.660e^-5	0.548	SYNONYMOUS_CODING Hex-t1 DOWNSTREAM tx	TF binding site mE1_TFBS_sens
2R	5004784	2R_5004784_SNP [dm3] 2R_9117279_SNP [dm6]	C	T	2.716e^-5	0.551	SYNONYMOUS_CODING Su_var_2-10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25079056	3R_25079056_SNP [dm3] 3R_29253334_SNP [dm6]	G	A	2.731e^-5	0.551	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	6520727	X_6520727_SNP [dm3] X_6626694_SNP [dm6]	T	A	2.772e^-5	0.553	INTRON pigs
X	13494833	X_13494833_SNP [dm3] X_13600800_SNP [dm6]	G	A	2.837e^-5	0.56	INTRON up
2R	6036195	2R_6036195_SNP [dm3] 2R_10148690_SNP [dm6]	C	T	2.871e^-5	0.561	NON_SYNONYMOUS_CODING KCNQ INTRON KCNQ
X	14062590	X_14062590_SNP [dm3] X_14168557_SNP [dm6]	T	A	2.926e^-5	0.563	INTERGENIC
X	14062596	X_14062596_SNP [dm3] X_14168563_SNP [dm6]	T	A	2.943e^-5	0.563	INTERGENIC
2L	15029924	2L_15029924_SNP [dm3] 2L_15029924_SNP [dm6]	C	T	3.075e^-5	0.583	DOWNSTREAM CG33310 INTRON GABA-B-R1
2R	14410942	2R_14410942_SNP [dm3] 2R_18523437_SNP [dm6]	C	G	3.165e^-5	0.594	UTR_3_PRIME CG43066 INTRON CG43066
2R	3344958	2R_3344958_INS [dm3] 2R_7457453_INS [dm6]	A	ATGATGATGATTGC...	3.306e^-5	0.609	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3350843	2R_3350843_SNP [dm3] 2R_7463338_SNP [dm6]	T	C	3.314e^-5	0.609	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7042519	2R_7042519_SNP [dm3] 2R_11155014_SNP [dm6]	A	T	3.375e^-5	0.613	SYNONYMOUS_CODING CG13230 INTRON CG13229
2R	3354774	2R_3354774_SNP [dm3] 2R_7467269_SNP [dm6]	A	G	3.524e^-5	0.613	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5781437	2R_5781437_SNP [dm3] 2R_9893932_SNP [dm6]	A	C	3.594e^-5	0.613	INTRON CG30007
2R	13920139	2R_13920139_SNP [dm3] 2R_18032634_SNP [dm6]	A	G	3.602e^-5	0.613	INTERGENIC
3R	26115687	3R_26115687_SNP [dm3] 3R_30289965_SNP [dm6]	C	G	3.604e^-5	0.613	INTRON hdc
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	3.611e^-5	0.613	INTRON CG18769
3L	651081	3L_651081_SNP [dm3] 3L_651081_SNP [dm6]	C	T	3.612e^-5	0.613	SYNONYMOUS_CODING Gale DOWNSTREAM CG3402	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8560309	3R_8560309_SNP [dm3] 3R_12734587_SNP [dm6]	C	T	3.622e^-5	0.613	INTERGENIC
2R	10951246	2R_10951246_SNP [dm3] 2R_15063741_SNP [dm6]	C	T	3.625e^-5	0.613	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	11930160	2L_11930160_SNP [dm3] 2L_11930160_SNP [dm6]	G	A	3.792e^-5	0.631	INTERGENIC
2L	8150598	2L_8150598_SNP [dm3] 2L_8150598_SNP [dm6]	T	C	3.803e^-5	0.631	INTRON CG8552 & 1 other
2R	1094500	2R_1094500_SNP [dm3] 2R_5206995_SNP [dm6]	T	G	3.867e^-5	0.636	INTRON Nipped-A	transposable element FlyBase
3L	6098373	3L_6098373_SNP [dm3] 3L_6105273_SNP [dm6]	C	G	3.978e^-5	0.648	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18568420	2R_18568420_SNP [dm3] 2R_22680915_SNP [dm6]	A	T	4.006e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	5731332	2R_5731332_SNP [dm3] 2R_9843827_SNP [dm6]	C	T	4.111e^-5	0.657	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	22580529	2L_22580529_SNP [dm3] 2L_22687797_SNP [dm6]	G	C	4.134e^-5	0.657	INTRON CG40006
2R	4763658	2R_4763658_SNP [dm3] 2R_8876153_SNP [dm6]	G	A	4.208e^-5	0.663	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8204045	3R_8204045_SNP [dm3] 3R_12378323_SNP [dm6]	T	C	4.266e^-5	0.664	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
2R	5779845	2R_5779845_SNP [dm3] 2R_9892340_SNP [dm6]	A	T	4.308e^-5	0.664	NON_SYNONYMOUS_CODING CG30007 UPSTREAM CG1513	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5741733	2R_5741733_SNP [dm3] 2R_9854228_SNP [dm6]	A	G	4.320e^-5	0.664	INTRON CG1516	TF binding site mE1_TFBS_cad
X	9505713	X_9505713_SNP [dm3] X_9611680_SNP [dm6]	C	A	4.353e^-5	0.664	NON_SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2545835	2L_2545835_SNP [dm3] 2L_2545835_SNP [dm6]	C	A	4.483e^-5	0.678	INTERGENIC
3L	10812288	3L_10812288_SNP [dm3] 3L_10819188_SNP [dm6]	C	T	4.541e^-5	0.681	INTERGENIC
3R	23254137	3R_23254137_SNP [dm3] 3R_27428415_SNP [dm6]	T	C	4.606e^-5	0.686	INTRON side
2R	3775699	2R_3775699_SNP [dm3] 2R_7888194_SNP [dm6]	A	G	4.689e^-5	0.691	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16125570	2R_16125570_SNP [dm3] 2R_20238065_SNP [dm6]	T	C	4.715e^-5	0.691	DOWNSTREAM CG13869 INTRON CG11099
2R	3356324	2R_3356324_SNP [dm3] 2R_7468819_SNP [dm6]	C	T	4.786e^-5	0.691	INTRON Aldh-III
2R	6956872	2R_6956872_SNP [dm3] 2R_11069367_SNP [dm6]	A	G	4.833e^-5	0.691	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	7622687	3L_7622687_SNP [dm3] 3L_7629587_SNP [dm6]	T	A	4.857e^-5	0.691	INTRON CG33275
3L	10812279	3L_10812279_SNP [dm3] 3L_10819179_SNP [dm6]	G	A	4.882e^-5	0.691	INTERGENIC
2R	3360483	2R_3360483_SNP [dm3] 2R_7472978_SNP [dm6]	C	A	4.903e^-5	0.691	INTRON Aldh-III	TF binding site BDTNP1_TFBS_dl
3R	8204071	3R_8204071_SNP [dm3] 3R_12378349_SNP [dm6]	T	C	5.088e^-5	0.707	UPSTREAM GstD7 DOWNSTREAM GstD6 INTERGENIC
2L	2605261	2L_2605261_SNP [dm3] 2L_2605261_SNP [dm6]	G	T	5.089e^-5	0.707	INTERGENIC
X	9472707	X_9472707_SNP [dm3] X_9578674_SNP [dm6]	A	G	5.191e^-5	0.716	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	5781559	2R_5781559_SNP [dm3] 2R_9894054_SNP [dm6]	C	T	5.264e^-5	0.721	NON_SYNONYMOUS_CODING CG30007
2R	14116338	2R_14116338_SNP [dm3] 2R_18228833_SNP [dm6]	C	T	5.339e^-5	0.726	DOWNSTREAM CR45310 EXON CR45311
2R	5781414	2R_5781414_SNP [dm3] 2R_9893909_SNP [dm6]	T	A	5.594e^-5	0.752	INTRON CG30007
2R	16129116	2R_16129116_SNP [dm3] 2R_20241611_SNP [dm6]	T	C	5.614e^-5	0.752	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
X	14062152	X_14062152_SNP [dm3] X_14168119_SNP [dm6]	T	A	5.697e^-5	0.753	INTERGENIC
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	5.697e^-5	0.753	UPSTREAM hoe1 INTRON hoe1
2L	552736	2L_552736_SNP [dm3] 2L_552736_SNP [dm6]	T	C	5.769e^-5	0.755	START_GAINED Ets21C UTR_5_PRIME Ets21C UPSTREAM Ets21C
3R	8365132	3R_8365132_SNP [dm3] 3R_12539410_SNP [dm6]	C	T	5.796e^-5	0.755	INTRON Octbeta3R
2L	10352311	2L_10352311_DEL [dm3] 2L_10352311_DEL [dm6]	GG	C	5.946e^-5	0.766	UPSTREAM CG34367 INTRON CG34367
3L	4291287	3L_4291287_SNP [dm3] 3L_4291287_SNP [dm6]	C	T	5.959e^-5	0.766	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
X	14062070	X_14062070_SNP [dm3] X_14168037_SNP [dm6]	A	G	6.115e^-5	0.774	INTERGENIC
2R	5777267	2R_5777267_SNP [dm3] 2R_9889762_SNP [dm6]	G	A	6.131e^-5	0.774	UPSTREAM CG30008 DOWNSTREAM CG12923 INTRON CG1513
2L	19269281	2L_19269281_SNP [dm3] 2L_19269281_SNP [dm6]	G	A	6.167e^-5	0.774	EXON CR44190
3L	13329152	3L_13329152_SNP [dm3] 3L_13336052_SNP [dm6]	G	T	6.187e^-5	0.774	INTERGENIC
2R	5778612	2R_5778612_SNP [dm3] 2R_9891107_SNP [dm6]	G	A	6.270e^-5	0.775	UTR_3_PRIME CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	10737194	3L_10737194_SNP [dm3] 3L_10744094_SNP [dm6]	T	A	6.279e^-5	0.775	INTERGENIC
2R	3363055	2R_3363055_SNP [dm3] 2R_7475550_SNP [dm6]	A	G	6.402e^-5	0.785	UTR_5_PRIME Aldh-III UPSTREAM Aldh-III
3R	8560304	3R_8560304_SNP [dm3] 3R_12734582_SNP [dm6]	A	C	6.450e^-5	0.785	INTERGENIC
3R	17083411	3R_17083411_INS [dm3] 3R_21257689_INS [dm6]	G	AGGC	6.539e^-5	0.785	INTRON ETHR
2L	10522790	2L_10522790_SNP [dm3] 2L_10522790_SNP [dm6]	C	G	6.544e^-5	0.785	INTERGENIC
2R	16128827	2R_16128827_SNP [dm3] 2R_20241322_SNP [dm6]	A	G	6.571e^-5	0.785	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2L	18825558	2L_18825558_SNP [dm3] 2L_18825558_SNP [dm6]	A	G	6.748e^-5	0.801	SYNONYMOUS_CODING CG17323	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8349787	3R_8349787_SNP [dm3] 3R_12524065_SNP [dm6]	C	A	6.882e^-5	0.806	INTRON Octbeta3R
2R	6064175	2R_6064175_SNP [dm3] 2R_10176670_SNP [dm6]	G	A	6.920e^-5	0.806	INTRON KCNQ
3R	14295746	3R_14295746_SNP [dm3] 3R_18470024_SNP [dm6]	G	A	6.994e^-5	0.806	INTRON fru
3L	2763955	3L_2763955_SNP [dm3] 3L_2763955_SNP [dm6]	T	C	7.010e^-5	0.806	INTRON Mrtf
X	9472697	X_9472697_SNP [dm3] X_9578664_SNP [dm6]	T	G	7.035e^-5	0.806	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	2155211	3L_2155211_SNP [dm3] 3L_2155211_SNP [dm6]	T	A	7.046e^-5	0.806	NON_SYNONYMOUS_CODING CG15822 INTRON CG15822
2L	12727971	2L_12727971_SNP [dm3] 2L_12727971_SNP [dm6]	A	T	7.255e^-5	0.825	INTRON MRP
3L	12630109	3L_12630109_SNP [dm3] 3L_12637009_SNP [dm6]	C	T	7.379e^-5	0.833	INTRON CR32111
3R	17635220	3R_17635220_SNP [dm3] 3R_21809498_SNP [dm6]	C	T	7.468e^-5	0.833	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5204852	X_5204852_DEL [dm3] X_5310819_DEL [dm6]	TGAGT	T	7.546e^-5	0.833	UTR_3_PRIME TrxT DOWNSTREAM snf
2L	10352367	2L_10352367_SNP [dm3] 2L_10352367_SNP [dm6]	A	C	7.565e^-5	0.833	UPSTREAM CG34367 INTRON CG34367
3L	6098331	3L_6098331_SNP [dm3] 3L_6105231_SNP [dm6]	T	G	7.571e^-5	0.833	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1238487	2L_1238487_SNP [dm3] 2L_1238487_SNP [dm6]	T	G	7.591e^-5	0.833	INTERGENIC
3R	8217622	3R_8217622_SNP [dm3] 3R_12391900_SNP [dm6]	C	G	7.682e^-5	0.838	SYNONYMOUS_CODING CG10096 UTR_3_PRIME CG10097 INTRON CG34402
X	6643814	X_6643814_DEL [dm3] X_6749781_DEL [dm6]	ACTCAGAA	A	7.813e^-5	0.847	INTRON CG14439
2L	1200721	2L_1200721_SNP [dm3] 2L_1200721_SNP [dm6]	G	A	7.946e^-5	0.857	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3L	798374	3L_798374_SNP [dm3] 3L_798374_SNP [dm6]	C	T	8.010e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19007826	2R_19007826_SNP [dm3] 2R_23120303_SNP [dm6]	A	G	8.145e^-5	0.864	INTERGENIC
2L	15029923	2L_15029923_SNP [dm3] 2L_15029923_SNP [dm6]	A	C	8.154e^-5	0.864	DOWNSTREAM CG33310 INTRON GABA-B-R1
X	12486286	X_12486286_SNP [dm3] X_12592253_SNP [dm6]	T	A	8.348e^-5	0.876	UPSTREAM LIMK1 DOWNSTREAM CG1824 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	5780076	2R_5780076_SNP [dm3] 2R_9892571_SNP [dm6]	A	G	8.356e^-5	0.876	UPSTREAM CG1513 INTRON CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12600679	2R_12600679_SNP [dm3] 2R_16713174_SNP [dm6]	C	A	8.484e^-5	0.878	INTRON CG30463
3R	26158214	3R_26158214_SNP [dm3] 3R_30332492_SNP [dm6]	C	T	8.530e^-5	0.878	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	12049992	3L_12049992_DEL [dm3] 3L_12056892_DEL [dm6]	ATCAG	T	8.570e^-5	0.878	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8202542	3R_8202542_SNP [dm3] 3R_12376820_SNP [dm6]	G	T	8.626e^-5	0.878	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3R	26158603	3R_26158603_SNP [dm3] 3R_30332881_SNP [dm6]	C	T	8.641e^-5	0.878	INTRON hdc
2R	6928999	2R_6928999_SNP [dm3] 2R_11041494_SNP [dm6]	T	C	8.663e^-5	0.878	INTRON luna
3R	8560625	3R_8560625_SNP [dm3] 3R_12734903_SNP [dm6]	T	A	8.737e^-5	0.879	INTERGENIC
2L	18815145	2L_18815145_SNP [dm3] 2L_18815145_SNP [dm6]	T	A	8.763e^-5	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10804231	3R_10804231_SNP [dm3] 3R_14978509_SNP [dm6]	C	G	9.002e^-5	0.88	INTERGENIC
3R	8202652	3R_8202652_SNP [dm3] 3R_12376930_SNP [dm6]	A	G	9.002e^-5	0.88	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3R	11690390	3R_11690390_SNP [dm3] 3R_15864668_SNP [dm6]	C	T	9.013e^-5	0.88	INTRON CG31183
2R	15131659	2R_15131659_SNP [dm3] 2R_19244154_SNP [dm6]	A	G	9.043e^-5	0.88	DOWNSTREAM cora INTERGENIC
2R	19259574	2R_19259574_SNP [dm3] 2R_23372051_SNP [dm6]	T	A	9.056e^-5	0.88	DOWNSTREAM Ice1 INTRON Golgin245
2R	8994835	2R_8994835_SNP [dm3] 2R_13107330_SNP [dm6]	A	T	9.084e^-5	0.88	INTERGENIC
2R	15673586	2R_15673586_SNP [dm3] 2R_19786081_SNP [dm6]	A	G	9.125e^-5	0.88	EXON CR45231	regulatory region REDfly_CRMs
3R	23269845	3R_23269845_SNP [dm3] 3R_27444123_SNP [dm6]	T	G	9.168e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8202582	3R_8202582_SNP [dm3] 3R_12376860_SNP [dm6]	T	C	9.192e^-5	0.88	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
2L	4929944	2L_4929944_SNP [dm3] 2L_4929944_SNP [dm6]	T	G	9.390e^-5	0.891	INTRON hoe1
3R	8214415	3R_8214415_SNP [dm3] 3R_12388693_SNP [dm6]	T	A	9.401e^-5	0.891	UTR_3_PRIME CG33098 UPSTREAM CG34402 DOWNSTREAM CG33098 INTRON CG34402
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	9.557e^-5	0.897	INTRON CG18769
3R	8202663	3R_8202663_SNP [dm3] 3R_12376941_SNP [dm6]	T	A	9.566e^-5	0.897	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
X	16810998	X_16810998_SNP [dm3] X_16916965_SNP [dm6]	G	A	9.693e^-5	0.9	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	3362324	2R_3362324_SNP [dm3] 2R_7474819_SNP [dm6]	C	T	9.697e^-5	0.9	UPSTREAM Aldh-III INTRON Aldh-III	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
2R	5780578	2R_5780578_SNP [dm3] 2R_9893073_SNP [dm6]	T	A	9.768e^-5	0.903	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_sens
X	11438550	X_11438550_SNP [dm3] X_11544517_SNP [dm6]	G	T	9.977e^-5	0.911	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6098335	3L_6098335_SNP [dm3] 3L_6105235_SNP [dm6]	C	T	9.998e^-5	0.911	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15292667	3L_15292667_SNP [dm3] 3L_15299567_SNP [dm6]	C	T	1.004e^-4	0.911	SYNONYMOUS_CODING Best4
3R	8213161	3R_8213161_INS [dm3] 3R_12387439_INS [dm6]	T	TTGATA	1.007e^-4	0.911	UPSTREAM CG33098 INTRON CG34402 & 1 other
2R	3358434	2R_3358434_SNP [dm3] 2R_7470929_SNP [dm6]	G	T	1.011e^-4	0.911	INTRON Aldh-III
2R	18448195	2R_18448195_SNP [dm3] 2R_22560690_SNP [dm6]	T	C	1.015e^-4	0.911	INTRON px	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26174415	3R_26174415_SNP [dm3] 3R_30348693_SNP [dm6]	G	C	1.027e^-4	0.916	INTRON hdc
2L	19897953	2L_19897953_SNP [dm3] 2L_19897953_SNP [dm6]	T	C	1.032e^-4	0.916	INTRON sick
2L	11323812	2L_11323812_DEL [dm3] 2L_11323812_DEL [dm6]	CGTTC	C	1.039e^-4	0.916	INTERGENIC
3R	8202675	3R_8202675_SNP [dm3] 3R_12376953_SNP [dm6]	T	A	1.051e^-4	0.916	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3R	24090145	3R_24090145_DEL [dm3] 3R_28264423_DEL [dm6]	TT	T	1.053e^-4	0.916	UPSTREAM CG43125 INTRON CG43124
3R	13837491	3R_13837491_SNP [dm3] 3R_18011769_SNP [dm6]	T	G	1.054e^-4	0.916	INTRON cpo
2R	17966755	2R_17966755_SNP [dm3] 2R_22079250_SNP [dm6]	G	A	1.058e^-4	0.916	UTR_3_PRIME GlcT-1 UPSTREAM Synj
3R	25079023	3R_25079023_SNP [dm3] 3R_29253301_SNP [dm6]	T	A	1.068e^-4	0.916	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	13919968	2R_13919968_SNP [dm3] 2R_18032463_SNP [dm6]	G	A	1.077e^-4	0.916	INTERGENIC
2R	13919973	2R_13919973_SNP [dm3] 2R_18032468_SNP [dm6]	G	A	1.077e^-4	0.916	INTERGENIC
3L	12630112	3L_12630112_SNP [dm3] 3L_12637012_SNP [dm6]	T	G	1.079e^-4	0.916	INTRON CR32111
3R	17785177	3R_17785177_SNP [dm3] 3R_21959455_SNP [dm6]	T	C	1.092e^-4	0.916	INTRON Eip93F
3R	26174416	3R_26174416_INS [dm3] 3R_30348694_INS [dm6]	T	TCTT	1.094e^-4	0.916	INTRON hdc
2L	2087325	2L_2087325_SNP [dm3] 2L_2087325_SNP [dm6]	A	C	1.097e^-4	0.916	INTRON dpr3
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	1.109e^-4	0.916	INTRON CG6282
2R	1675012	2R_1675012_SNP [dm3] 2R_5787507_SNP [dm6]	T	C	1.116e^-4	0.916	INTERGENIC
3R	8224594	3R_8224594_SNP [dm3] 3R_12398872_SNP [dm6]	G	A	1.120e^-4	0.916	DOWNSTREAM lig3 INTRON CG34402 EXON Cyp9f3Psi
2R	13885114	2R_13885114_SNP [dm3] 2R_17997609_SNP [dm6]	T	C	1.120e^-4	0.916	INTRON dpr13
X	16868115	X_16868115_SNP [dm3] X_16974082_SNP [dm6]	G	C	1.125e^-4	0.916	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11765807	2R_11765807_SNP [dm3] 2R_15878302_SNP [dm6]	G	A	1.127e^-4	0.916	INTRON sli
3R	8202679	3R_8202679_SNP [dm3] 3R_12376957_SNP [dm6]	T	C	1.132e^-4	0.916	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3R	26174414	3R_26174414_SNP [dm3] 3R_30348692_SNP [dm6]	G	T	1.134e^-4	0.916	INTRON hdc
3R	26174412	3R_26174412_SNP [dm3] 3R_30348690_SNP [dm6]	C	T	1.136e^-4	0.916	INTRON hdc
2R	5023665	2R_5023665_SNP [dm3] 2R_9136160_SNP [dm6]	C	T	1.139e^-4	0.916	DOWNSTREAM Hydr1 INTRON alc	TF binding site mE1_TFBS_cad
2R	19259598	2R_19259598_SNP [dm3] 2R_23372075_SNP [dm6]	A	T	1.146e^-4	0.916	DOWNSTREAM Ice1 INTRON Golgin245
3R	8233374	3R_8233374_SNP [dm3] 3R_12407652_SNP [dm6]	C	G	1.148e^-4	0.916	NON_SYNONYMOUS_CODING CG5167 UPSTREAM CG5196	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23075748	3R_23075748_SNP [dm3] 3R_27250026_SNP [dm6]	T	C	1.152e^-4	0.916	INTRON CG5987	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5735501	2R_5735501_SNP [dm3] 2R_9847996_SNP [dm6]	T	A	1.162e^-4	0.919	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	1673510	2R_1673510_SNP [dm3] 2R_5786005_SNP [dm6]	G	A	1.168e^-4	0.921	INTERGENIC	transposable element FlyBase
2R	3344532	2R_3344532_SNP [dm3] 2R_7457027_SNP [dm6]	A	G	1.177e^-4	0.921	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	26174409	3R_26174409_SNP [dm3] 3R_30348687_SNP [dm6]	T	C	1.178e^-4	0.921	INTRON hdc
2L	1709676	2L_1709676_SNP [dm3] 2L_1709676_SNP [dm6]	A	C	1.188e^-4	0.924	NON_SYNONYMOUS_CODING CG17660 UPSTREAM mRpL48 DOWNSTREAM CR44976	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	3351846	2R_3351846_SNP [dm3] 2R_7464341_SNP [dm6]	A	T	1.200e^-4	0.928	NON_SYNONYMOUS_CODING CG11127 UPSTREAM CG11141 DOWNSTREAM p47	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14231828	3L_14231828_SNP [dm3] 3L_14238728_SNP [dm6]	G	T	1.202e^-4	0.928	DOWNSTREAM CG7906 EXON CR45399
3R	18323116	3R_18323116_DEL [dm3] 3R_22497394_DEL [dm6]	TT	T	1.222e^-4	0.931	INTRON Octbeta1R
3L	15169601	3L_15169601_SNP [dm3] 3L_15176501_SNP [dm6]	G	T	1.241e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2540544	2L_2540544_SNP [dm3] 2L_2540544_SNP [dm6]	T	C	1.249e^-4	0.931	INTERGENIC
3L	5422097	3L_5422097_SNP [dm3] 3L_5428997_SNP [dm6]	G	A	1.249e^-4	0.931	INTRON CG34391
3R	13678543	3R_13678543_SNP [dm3] 3R_17852821_SNP [dm6]	C	A	1.250e^-4	0.931	INTRON tinc
2L	16989596	2L_16989596_INS [dm3] 2L_16989596_INS [dm6]	G	GA	1.253e^-4	0.931	INTRON beat-IIIb
3L	2763942	3L_2763942_SNP [dm3] 3L_2763942_SNP [dm6]	G	A	1.257e^-4	0.931	INTRON Mrtf
2R	17151972	2R_17151972_SNP [dm3] 2R_21264467_SNP [dm6]	C	T	1.258e^-4	0.931	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
X	7659881	X_7659881_SNP [dm3] X_7765848_SNP [dm6]	C	T	1.267e^-4	0.931	SYNONYMOUS_CODING Ir7a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10352369	2L_10352369_SNP [dm3] 2L_10352369_SNP [dm6]	A	G	1.269e^-4	0.931	UPSTREAM CG34367 INTRON CG34367
3R	22253758	3R_22253758_SNP [dm3] 3R_26428036_SNP [dm6]	G	A	1.278e^-4	0.931	UPSTREAM CR43434 EXON CR31084
3L	13353624	3L_13353624_SNP [dm3] 3L_13360524_SNP [dm6]	C	T	1.279e^-4	0.931	INTERGENIC
X	16799197	X_16799197_SNP [dm3] X_16905164_SNP [dm6]	G	T	1.281e^-4	0.931	EXON CR44754
3L	12050044	3L_12050044_SNP [dm3] 3L_12056944_SNP [dm6]	A	G	1.283e^-4	0.931	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25067910	3R_25067910_SNP [dm3] 3R_29242188_SNP [dm6]	G	A	1.286e^-4	0.931	SPLICE_SITE_REGION CG31445 INTRON CG31445	TF binding site mE1_TFBS_sens
3L	12630140	3L_12630140_INS [dm3] 3L_12637040_INS [dm6]	T	TTAGAT	1.293e^-4	0.931	INTRON CR32111
2R	5717075	2R_5717075_SNP [dm3] 2R_9829570_SNP [dm6]	G	A	1.295e^-4	0.931	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8194321	3R_8194321_SNP [dm3] 3R_12368599_SNP [dm6]	A	G	1.296e^-4	0.931	INTRON GstD1	TF binding site mE1_TFBS_Trl
2R	16281341	2R_16281341_SNP [dm3] 2R_20393836_SNP [dm6]	A	T	1.310e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	1.313e^-4	0.936	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24607609	3R_24607609_SNP [dm3] 3R_28781887_SNP [dm6]	T	C	1.330e^-4	0.945	INTERGENIC
3L	11253963	3L_11253963_SNP [dm3] 3L_11260863_SNP [dm6]	T	C	1.342e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10803859	3R_10803859_SNP [dm3] 3R_14978137_SNP [dm6]	C	A	1.355e^-4	0.946	INTERGENIC
2R	20438758	2R_20438758_SNP [dm3] 2R_24551235_SNP [dm6]	A	T	1.355e^-4	0.946	INTRON CG4622 & 1 other
3R	11746536	3R_11746536_SNP [dm3] 3R_15920814_SNP [dm6]	C	T	1.359e^-4	0.946	UPSTREAM CG4221 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3776245	2R_3776245_SNP [dm3] 2R_7888740_SNP [dm6]	A	G	1.368e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9532134	2L_9532134_SNP [dm3] 2L_9532134_SNP [dm6]	T	A	1.384e^-4	0.946	INTRON Oatp30B	TF binding site mE1_TFBS_sens
X	10858542	X_10858542_SNP [dm3] X_10964509_SNP [dm6]	A	G	1.386e^-4	0.946	NON_SYNONYMOUS_CODING C901 DOWNSTREAM Myo10A	TF binding site mE1_TFBS_chinmo
2L	10079962	2L_10079962_SNP [dm3] 2L_10079962_SNP [dm6]	T	A	1.388e^-4	0.946	INTRON CG44153	TF binding site mE1_TFBS_inv
3L	8314568	3L_8314568_SNP [dm3] 3L_8321468_SNP [dm6]	A	G	1.392e^-4	0.946	INTRON CG13670	TF binding site mE1_TFBS_cad
3R	23294901	3R_23294901_SNP [dm3] 3R_27469179_SNP [dm6]	G	A	1.398e^-4	0.946	INTERGENIC
2L	2517298	2L_2517298_SNP [dm3] 2L_2517298_SNP [dm6]	G	C	1.406e^-4	0.946	SYNONYMOUS_CODING CG3528
2R	19259554	2R_19259554_SNP [dm3] 2R_23372031_SNP [dm6]	A	G	1.406e^-4	0.946	SYNONYMOUS_CODING Golgin245 DOWNSTREAM Ice1
2R	13920115	2R_13920115_SNP [dm3] 2R_18032610_SNP [dm6]	T	A	1.411e^-4	0.946	INTERGENIC
3R	3802600	3R_3802600_INS [dm3] 3R_7976878_INS [dm6]	T	TATGT	1.425e^-4	0.946	INTRON CD98hc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	7362700	X_7362700_SNP [dm3] X_7468667_SNP [dm6]	T	C	1.426e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9438952	2L_9438952_SNP [dm3] 2L_9438952_SNP [dm6]	T	C	1.439e^-4	0.946	INTRON numb
2R	16751222	2R_16751222_SNP [dm3] 2R_20863717_SNP [dm6]	G	A	1.454e^-4	0.946	UPSTREAM CG15227 INTERGENIC
3R	11649695	3R_11649695_SNP [dm3] 3R_15823973_SNP [dm6]	A	G	1.475e^-4	0.946	UTR_3_PRIME alpha-Man-IIb & 1 other DOWNSTREAM rec
2R	14778483	2R_14778483_SNP [dm3] 2R_18890978_SNP [dm6]	C	T	1.476e^-4	0.946	INTRON sano
2L	22596883	2L_22596883_SNP [dm3] 2L_22704151_SNP [dm6]	T	A	1.476e^-4	0.946	INTRON CG40006
2R	17037206	2R_17037206_SNP [dm3] 2R_21149701_SNP [dm6]	T	C	1.480e^-4	0.946	SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	829042	3L_829042_SNP [dm3] 3L_829042_SNP [dm6]	T	C	1.481e^-4	0.946	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 DOWNSTREAM snoRNA:Me5.8S-G74 EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15160839	2R_15160839_SNP [dm3] 2R_19273334_SNP [dm6]	A	G	1.486e^-4	0.946	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	9197857	X_9197857_SNP [dm3] X_9303824_SNP [dm6]	C	T	1.489e^-4	0.946	DOWNSTREAM lz INTERGENIC
2L	22032380	2L_22032380_SNP [dm3] 2L_22032380_SNP [dm6]	G	A	1.498e^-4	0.946	UPSTREAM CR45335 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	16918054	3R_16918054_SNP [dm3] 3R_21092332_SNP [dm6]	C	T	1.500e^-4	0.946	INTRON RhoGAP93B & 1 other
3L	8315156	3L_8315156_SNP [dm3] 3L_8322056_SNP [dm6]	C	T	1.520e^-4	0.946	SYNONYMOUS_CODING CG13670
3R	8560599	3R_8560599_SNP [dm3] 3R_12734877_SNP [dm6]	G	C	1.528e^-4	0.946	INTERGENIC
2L	18815169	2L_18815169_SNP [dm3] 2L_18815169_SNP [dm6]	A	G	1.530e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6517000	2L_6517000_SNP [dm3] 2L_6517000_SNP [dm6]	T	C	1.537e^-4	0.946	INTRON CG31637
2R	5018429	2R_5018429_SNP [dm3] 2R_9130924_SNP [dm6]	T	A	1.538e^-4	0.946	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25210370	3R_25210370_SNP [dm3] 3R_29384648_SNP [dm6]	G	T	1.543e^-4	0.946	INTRON Ptp99A
2L	2546126	2L_2546126_SNP [dm3] 2L_2546126_SNP [dm6]	G	A	1.559e^-4	0.946	INTERGENIC
2L	7786182	2L_7786182_SNP [dm3] 2L_7786182_SNP [dm6]	T	A	1.563e^-4	0.946	UTR_3_PRIME CG7149 DOWNSTREAM CG7154
2L	9885006	2L_9885006_SNP [dm3] 2L_9885006_SNP [dm6]	A	T	1.572e^-4	0.946	INTRON nAChRalpha6
2L	9835295	2L_9835295_SNP [dm3] 2L_9835295_SNP [dm6]	T	C	1.573e^-4	0.946	INTRON nAChRalpha6
2R	15160635	2R_15160635_SNP [dm3] 2R_19273130_SNP [dm6]	G	C	1.582e^-4	0.946	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	8653676	3L_8653676_SNP [dm3] 3L_8660576_SNP [dm6]	C	T	1.582e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15504681	3L_15504681_SNP [dm3] 3L_15511581_SNP [dm6]	G	T	1.582e^-4	0.946	UTR_5_PRIME Eip71CD UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15292646	3L_15292646_SNP [dm3] 3L_15299546_SNP [dm6]	C	A	1.591e^-4	0.946	SYNONYMOUS_CODING Best4
3R	25078873	3R_25078873_SNP [dm3] 3R_29253151_SNP [dm6]	C	T	1.595e^-4	0.946	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	11753952	3R_11753952_SNP [dm3] 3R_15928230_SNP [dm6]	G	C	1.610e^-4	0.946	DOWNSTREAM CG34276 INTRON CG4221
3L	11019615	3L_11019615_SNP [dm3] 3L_11026515_SNP [dm6]	C	A	1.611e^-4	0.946	NON_SYNONYMOUS_CODING CG32079
2L	9681919	2L_9681919_DEL [dm3] 2L_9681919_DEL [dm6]	AA	A	1.613e^-4	0.946	DOWNSTREAM Pka-C1 INTERGENIC
3R	19214579	3R_19214579_SNP [dm3] 3R_23388857_SNP [dm6]	G	A	1.620e^-4	0.946	SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24245631	3R_24245631_SNP [dm3] 3R_28419909_SNP [dm6]	T	C	1.621e^-4	0.946	INTRON beat-VI
2R	3347729	2R_3347729_DEL [dm3] 2R_7460224_DEL [dm6]	AA	A	1.622e^-4	0.946	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2R	14994122	2R_14994122_SNP [dm3] 2R_19106617_SNP [dm6]	A	C	1.622e^-4	0.946	INTRON 5-HT1A
3R	4101138	3R_4101138_SNP [dm3] 3R_8275416_SNP [dm6]	A	G	1.624e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22324827	3R_22324827_SNP [dm3] 3R_26499105_SNP [dm6]	A	T	1.626e^-4	0.946	INTRON plum	TF binding site BDTNP1_TFBS_twi
2R	13717436	2R_13717436_SNP [dm3] 2R_17829931_SNP [dm6]	A	C	1.633e^-4	0.946	INTRON grh	regulatory region REDfly_CRMs
3R	8202459	3R_8202459_SNP [dm3] 3R_12376737_SNP [dm6]	T	G	1.640e^-4	0.946	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3L	18924329	3L_18924329_SNP [dm3] 3L_18931229_SNP [dm6]	C	A	1.644e^-4	0.946	INTRON CG32204	TF binding site mE1_TFBS_inv
3R	8212894	3R_8212894_SNP [dm3] 3R_12387172_SNP [dm6]	A	C	1.652e^-4	0.946	UPSTREAM CG33098 INTRON CG34402
2R	1675996	2R_1675996_SNP [dm3] 2R_5788491_SNP [dm6]	C	T	1.653e^-4	0.946	INTERGENIC
X	11554952	X_11554952_DEL [dm3] X_11660919_DEL [dm6]	CTTTATTATGTGTATTTCGA...	C	1.657e^-4	0.946	INTRON Ptp10D
3L	8278364	3L_8278364_SNP [dm3] 3L_8285264_SNP [dm6]	C	G	1.658e^-4	0.946	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7300295	3L_7300295_SNP [dm3] 3L_7307195_SNP [dm6]	G	A	1.668e^-4	0.946	INTRON unc-13-4A
2R	5008245	2R_5008245_SNP [dm3] 2R_9120740_SNP [dm6]	C	T	1.674e^-4	0.946	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
X	6520724	X_6520724_DEL [dm3] X_6626691_DEL [dm6]	GA	T	1.679e^-4	0.946	INTRON pigs
2R	19708993	2R_19708993_SNP [dm3] 2R_23821470_SNP [dm6]	T	A	1.681e^-4	0.946	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3L	2763946	3L_2763946_SNP [dm3] 3L_2763946_SNP [dm6]	T	C	1.682e^-4	0.946	INTRON Mrtf
3L	2763951	3L_2763951_SNP [dm3] 3L_2763951_SNP [dm6]	T	C	1.682e^-4	0.946	INTRON Mrtf
X	17074047	X_17074047_SNP [dm3] X_17180014_SNP [dm6]	G	A	1.683e^-4	0.946	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	1.702e^-4	0.946	INTRON CG44153 & 1 other
X	17074303	X_17074303_SNP [dm3] X_17180270_SNP [dm6]	T	A	1.703e^-4	0.946	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7183930	3L_7183930_SNP [dm3] 3L_7190830_SNP [dm6]	G	A	1.717e^-4	0.946	UPSTREAM Dscam2 INTERGENIC
3R	20768957	3R_20768957_SNP [dm3] 3R_24943235_SNP [dm6]	G	A	1.721e^-4	0.946	INTRON ssh	TF binding site mE1_TFBS_chinmo
3R	8209961	3R_8209961_SNP [dm3] 3R_12384239_SNP [dm6]	A	C	1.723e^-4	0.946	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8233903	3R_8233903_SNP [dm3] 3R_12408181_SNP [dm6]	C	T	1.735e^-4	0.946	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	17083432	3R_17083432_SNP [dm3] 3R_21257710_SNP [dm6]	A	T	1.735e^-4	0.946	INTRON ETHR
3R	7397925	3R_7397925_SNP [dm3] 3R_11572203_SNP [dm6]	A	C	1.736e^-4	0.946	INTRON Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12050085	3L_12050085_SNP [dm3] 3L_12056985_SNP [dm6]	G	A	1.739e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4997354	2R_4997354_SNP [dm3] 2R_9109849_SNP [dm6]	G	A	1.745e^-4	0.946	UPSTREAM Pmm45A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25854214	3R_25854214_DEL [dm3] 3R_30028492_DEL [dm6]	TAA	T	1.760e^-4	0.946	INTRON Axn
2L	12754111	2L_12754111_DEL [dm3] 2L_12754111_DEL [dm6]	TT	T	1.765e^-4	0.946	INTERGENIC
3R	17213941	3R_17213941_SNP [dm3] 3R_21388219_SNP [dm6]	T	A	1.770e^-4	0.946	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2088089	2L_2088089_SNP [dm3] 2L_2088089_SNP [dm6]	T	C	1.786e^-4	0.946	INTRON dpr3
3R	27709356	3R_27709356_INS [dm3] 3R_31883634_INS [dm6]	A	AA	1.789e^-4	0.946	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6109815	3L_6109815_SNP [dm3] 3L_6116715_SNP [dm6]	G	T	1.796e^-4	0.946	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3R	21956150	3R_21956150_DEL [dm3] 3R_26130428_DEL [dm6]	AATAC	A	1.799e^-4	0.946	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
3R	21200778	3R_21200778_SNP [dm3] 3R_25375056_SNP [dm6]	C	T	1.802e^-4	0.946	INTRON Fur1
3R	17083442	3R_17083442_SNP [dm3] 3R_21257720_SNP [dm6]	A	T	1.804e^-4	0.946	INTRON ETHR
3L	834152	3L_834152_SNP [dm3] 3L_834152_SNP [dm6]	T	C	1.811e^-4	0.946	START_GAINED CG42553 UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11472460	2R_11472460_SNP [dm3] 2R_15584955_SNP [dm6]	A	G	1.812e^-4	0.946	INTERGENIC
3R	9617224	3R_9617224_SNP [dm3] 3R_13791502_SNP [dm6]	A	C	1.812e^-4	0.946	INTERGENIC
X	14184879	X_14184879_SNP [dm3] X_14290846_SNP [dm6]	C	T	1.813e^-4	0.946	INTERGENIC
X	14061293	X_14061293_SNP [dm3] X_14167260_SNP [dm6]	A	C	1.819e^-4	0.946	INTERGENIC
2R	3344122	2R_3344122_SNP [dm3] 2R_7456617_SNP [dm6]	A	G	1.825e^-4	0.946	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9756529	2R_9756529_SNP [dm3] 2R_13869024_SNP [dm6]	C	G	1.826e^-4	0.946	INTRON shot
2L	2843530	2L_2843530_SNP [dm3] 2L_2843530_SNP [dm6]	G	T	1.833e^-4	0.946	NON_SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3R	13678540	3R_13678540_SNP [dm3] 3R_17852818_SNP [dm6]	T	C	1.842e^-4	0.946	INTRON tinc
3R	8202474	3R_8202474_SNP [dm3] 3R_12376752_SNP [dm6]	T	A	1.843e^-4	0.946	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
2L	22630715	2L_22630715_SNP [dm3] 2L_22737983_SNP [dm6]	C	G	1.849e^-4	0.946	INTRON CG40006
3R	10076323	3R_10076323_SNP [dm3] 3R_14250601_SNP [dm6]	T	A	1.851e^-4	0.946	DOWNSTREAM Aats-met INTERGENIC
3R	8234000	3R_8234000_SNP [dm3] 3R_12408278_SNP [dm6]	A	G	1.851e^-4	0.946	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	13917650	2R_13917650_SNP [dm3] 2R_18030145_SNP [dm6]	T	C	1.860e^-4	0.946	INTERGENIC
3L	11425719	3L_11425719_SNP [dm3] 3L_11432619_SNP [dm6]	G	A	1.874e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11118294	3L_11118294_SNP [dm3] 3L_11125194_SNP [dm6]	G	T	1.875e^-4	0.946	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	12050022	3L_12050022_SNP [dm3] 3L_12056922_SNP [dm6]	T	G	1.876e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12848963	2R_12848963_SNP [dm3] 2R_16961458_SNP [dm6]	T	C	1.880e^-4	0.946	INTERGENIC
3R	25079138	3R_25079138_SNP [dm3] 3R_29253416_SNP [dm6]	G	A	1.886e^-4	0.946	NON_SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20377044	3R_20377044_SNP [dm3] 3R_24551322_SNP [dm6]	C	T	1.903e^-4	0.946	SPLICE_SITE_REGION Esyt2 INTRON Esyt2	TF binding site mE1_TFBS_cad
3L	2582137	3L_2582137_SNP [dm3] 3L_2582137_SNP [dm6]	C	T	1.903e^-4	0.946	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8209853	3R_8209853_SNP [dm3] 3R_12384131_SNP [dm6]	T	C	1.913e^-4	0.946	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8209854	3R_8209854_SNP [dm3] 3R_12384132_SNP [dm6]	T	C	1.913e^-4	0.946	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8744349	2L_8744349_SNP [dm3] 2L_8744349_SNP [dm6]	G	A	1.919e^-4	0.946	INTERGENIC
3R	23294950	3R_23294950_SNP [dm3] 3R_27469228_SNP [dm6]	C	T	1.925e^-4	0.946	INTERGENIC
X	14061292	X_14061292_SNP [dm3] X_14167259_SNP [dm6]	T	C	1.930e^-4	0.946	INTERGENIC
2R	12565484	2R_12565484_SNP [dm3] 2R_16677979_SNP [dm6]	T	C	1.931e^-4	0.946	INTRON CG30463
2L	643386	2L_643386_SNP [dm3] 2L_643386_SNP [dm6]	G	A	1.936e^-4	0.946	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10352410	2L_10352410_SNP [dm3] 2L_10352410_SNP [dm6]	A	C	1.939e^-4	0.946	UPSTREAM CG34367 INTRON CG34367
3R	17194074	3R_17194074_SNP [dm3] 3R_21368352_SNP [dm6]	T	C	1.946e^-4	0.946	UTR_5_PRIME pre-mod_mdg4_-V DOWNSTREAM pre-mod_mdg4_-Y & 3 others INTRON mod_mdg4_ & 2 others
2L	8845238	2L_8845238_SNP [dm3] 2L_8845238_SNP [dm6]	C	T	1.948e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26178852	3R_26178852_DEL [dm3] 3R_30353130_DEL [dm6]	ATA	A	1.951e^-4	0.946	INTRON hdc
2R	8388065	2R_8388065_SNP [dm3] 2R_12500560_SNP [dm6]	C	T	1.960e^-4	0.946	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8213155	3R_8213155_SNP [dm3] 3R_12387433_SNP [dm6]	G	T	1.971e^-4	0.946	UPSTREAM CG33098 INTRON CG34402 & 1 other
2R	3363750	2R_3363750_SNP [dm3] 2R_7476245_SNP [dm6]	A	G	1.987e^-4	0.946	SPLICE_SITE_DONOR Aldh-III INTRON Aldh-III
3R	9891777	3R_9891777_SNP [dm3] 3R_14066055_SNP [dm6]	A	C	2.036e^-4	0.946	INTRON foxo
2R	5028929	2R_5028929_SNP [dm3] 2R_9141424_SNP [dm6]	T	G	2.041e^-4	0.946	DOWNSTREAM shrb INTRON CG8788 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8930106	2R_8930106_SNP [dm3] 2R_13042601_SNP [dm6]	C	T	2.041e^-4	0.946	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8358461	2L_8358461_SNP [dm3] 2L_8358461_SNP [dm6]	C	G	2.046e^-4	0.946	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
2L	2935954	2L_2935954_SNP [dm3] 2L_2935954_SNP [dm6]	A	T	2.057e^-4	0.946	INTRON lilli
2R	10480052	2R_10480052_SNP [dm3] 2R_14592547_SNP [dm6]	A	G	2.079e^-4	0.946	SPLICE_SITE_ACCEPTOR CG12869 UTR_5_PRIME CG12869 INTRON CG12869	TF binding site mE1_TFBS_cad
3R	14075844	3R_14075844_SNP [dm3] 3R_18250122_SNP [dm6]	T	C	2.083e^-4	0.946	UTR_3_PRIME 14-3-3epsilon UPSTREAM CG18598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14574857	2R_14574857_SNP [dm3] 2R_18687352_SNP [dm6]	A	T	2.084e^-4	0.946	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8195016	3L_8195016_SNP [dm3] 3L_8201916_SNP [dm6]	C	A	2.086e^-4	0.946	SYNONYMOUS_CODING CG7366 UPSTREAM CG13679	TF binding site mE1_TFBS_cad
3R	13177832	3R_13177832_SNP [dm3] 3R_17352110_SNP [dm6]	T	C	2.090e^-4	0.946	INTRON beat-IIa
3L	12050021	3L_12050021_SNP [dm3] 3L_12056921_SNP [dm6]	T	C	2.091e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11117254	3L_11117254_SNP [dm3] 3L_11124154_SNP [dm6]	C	G	2.108e^-4	0.946	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11348426	2L_11348426_SNP [dm3] 2L_11348426_SNP [dm6]	T	A	2.113e^-4	0.946	INTERGENIC
2R	17906125	2R_17906125_SNP [dm3] 2R_22018620_SNP [dm6]	A	T	2.116e^-4	0.946	INTRON CG34370
3L	12050003	3L_12050003_SNP [dm3] 3L_12056903_SNP [dm6]	T	A	2.118e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11368608	2L_11368608_SNP [dm3] 2L_11368608_SNP [dm6]	C	T	2.120e^-4	0.946	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
X	18943249	X_18943249_SNP [dm3] X_19049216_SNP [dm6]	G	A	2.123e^-4	0.946	INTERGENIC
3L	8603790	3L_8603790_SNP [dm3] 3L_8610690_SNP [dm6]	A	G	2.128e^-4	0.946	INTRON CG6282
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	2.130e^-4	0.946	INTERGENIC
3L	4645319	3L_4645319_SNP [dm3] 3L_4645319_SNP [dm6]	A	G	2.132e^-4	0.946	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5731874	2R_5731874_SNP [dm3] 2R_9844369_SNP [dm6]	C	A	2.136e^-4	0.946	SYNONYMOUS_CODING CG1667	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	22696155	3R_22696155_SNP [dm3] 3R_26870433_SNP [dm6]	T	A	2.139e^-4	0.946	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12050039	3L_12050039_INS [dm3] 3L_12056939_INS [dm6]	TT	AAG	2.139e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8629962	2R_8629962_SNP [dm3] 2R_12742457_SNP [dm6]	G	C	2.140e^-4	0.946	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3344119	2R_3344119_SNP [dm3] 2R_7456614_SNP [dm6]	G	A	2.142e^-4	0.946	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9383446	3R_9383446_SNP [dm3] 3R_13557724_SNP [dm6]	T	A	2.148e^-4	0.946	INTERGENIC
2L	793525	2L_793525_SNP [dm3] 2L_793525_SNP [dm6]	C	T	2.156e^-4	0.946	INTERGENIC
3L	12050010	3L_12050010_SNP [dm3] 3L_12056910_SNP [dm6]	A	C	2.160e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12050072	3L_12050072_SNP [dm3] 3L_12056972_SNP [dm6]	T	C	2.160e^-4	0.946	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10195574	2L_10195574_SNP [dm3] 2L_10195574_SNP [dm6]	G	T	2.164e^-4	0.946	SYNONYMOUS_CODING Sur
3L	2763997	3L_2763997_SNP [dm3] 3L_2763997_SNP [dm6]	C	T	2.169e^-4	0.946	INTRON Mrtf
3L	2763953	3L_2763953_SNP [dm3] 3L_2763953_SNP [dm6]	C	T	2.173e^-4	0.946	INTRON Mrtf
2L	18474991	2L_18474991_SNP [dm3] 2L_18474991_SNP [dm6]	T	G	2.174e^-4	0.946	INTRON CG10283
3R	25346411	3R_25346411_SNP [dm3] 3R_29520689_SNP [dm6]	A	C	2.186e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8128028	3R_8128028_SNP [dm3] 3R_12302306_SNP [dm6]	T	C	2.199e^-4	0.946	UTR_3_PRIME svp
2R	13918692	2R_13918692_SNP [dm3] 2R_18031187_SNP [dm6]	A	G	2.205e^-4	0.946	INTERGENIC
2R	5018418	2R_5018418_SNP [dm3] 2R_9130913_SNP [dm6]	T	C	2.207e^-4	0.946	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	14185678	2R_14185678_SNP [dm3] 2R_18298173_SNP [dm6]	A	G	2.208e^-4	0.946	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3L	12095031	3L_12095031_SNP [dm3] 3L_12101931_SNP [dm6]	A	C	2.213e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	8799924	3R_8799924_SNP [dm3] 3R_12974202_SNP [dm6]	G	T	2.214e^-4	0.946	INTRON CG7381
2L	15400979	2L_15400979_SNP [dm3] 2L_15400979_SNP [dm6]	G	T	2.215e^-4	0.946	UPSTREAM CR45374 INTERGENIC
3R	16858154	3R_16858154_SNP [dm3] 3R_21032432_SNP [dm6]	A	G	2.220e^-4	0.946	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4929676	2L_4929676_SNP [dm3] 2L_4929676_SNP [dm6]	A	G	2.220e^-4	0.946	INTRON hoe1
3L	4291306	3L_4291306_SNP [dm3] 3L_4291306_SNP [dm6]	G	A	2.221e^-4	0.946	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
3L	8288353	3L_8288353_SNP [dm3] 3L_8295253_SNP [dm6]	T	A	2.232e^-4	0.946	UTR_5_PRIME CG7201
2L	8372130	2L_8372130_SNP [dm3] 2L_8372130_SNP [dm6]	C	T	2.235e^-4	0.946	UPSTREAM CG17292 INTRON CG17292
3L	1257825	3L_1257825_SNP [dm3] 3L_1257825_SNP [dm6]	A	T	2.238e^-4	0.946	INTRON CG9134
3L	18126361	3L_18126361_SNP [dm3] 3L_18133261_SNP [dm6]	C	T	2.238e^-4	0.946	UPSTREAM Cyp312a1 INTERGENIC
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	2.240e^-4	0.946	INTERGENIC
2L	18062628	2L_18062628_INS [dm3] 2L_18062628_INS [dm6]	A	AA	2.241e^-4	0.946	INTRON rdo
3L	18924330	3L_18924330_SNP [dm3] 3L_18931230_SNP [dm6]	C	A	2.247e^-4	0.946	INTRON CG32204	TF binding site mE1_TFBS_inv
3L	9094839	3L_9094839_SNP [dm3] 3L_9101739_SNP [dm6]	A	G	2.251e^-4	0.946	UTR_3_PRIME bol
2R	6080289	2R_6080289_SNP [dm3] 2R_10192784_SNP [dm6]	G	T	2.255e^-4	0.946	UPSTREAM KCNQ INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7663487	X_7663487_SNP [dm3] X_7769454_SNP [dm6]	C	T	2.255e^-4	0.946	DOWNSTREAM CG34338 INTERGENIC
3L	6098313	3L_6098313_SNP [dm3] 3L_6105213_SNP [dm6]	A	T	2.261e^-4	0.946	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11746586	3R_11746586_SNP [dm3] 3R_15920864_SNP [dm6]	C	T	2.262e^-4	0.946	UPSTREAM CG4221 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13461027	2L_13461027_SNP [dm3] 2L_13461027_SNP [dm6]	A	G	2.263e^-4	0.946	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784
2R	14216307	2R_14216307_SNP [dm3] 2R_18328802_SNP [dm6]	G	A	2.264e^-4	0.946	INTRON sbb
3R	25067678	3R_25067678_SNP [dm3] 3R_29241956_SNP [dm6]	G	A	2.265e^-4	0.946	NON_SYNONYMOUS_CODING CG31445
3L	12095035	3L_12095035_SNP [dm3] 3L_12101935_SNP [dm6]	A	G	2.272e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	3670289	2L_3670289_SNP [dm3] 2L_3670289_SNP [dm6]	G	A	2.274e^-4	0.946	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
X	5512969	X_5512969_SNP [dm3] X_5618936_SNP [dm6]	T	C	2.275e^-4	0.946	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	2.276e^-4	0.946	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	24431967	3R_24431967_SNP [dm3] 3R_28606245_SNP [dm6]	G	T	2.277e^-4	0.946	SYNONYMOUS_CODING CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25143237	3R_25143237_SNP [dm3] 3R_29317515_SNP [dm6]	A	T	2.279e^-4	0.946	SPLICE_SITE_REGION Cnx99A INTRON Cnx99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1200718	2L_1200718_SNP [dm3] 2L_1200718_SNP [dm6]	G	C	2.299e^-4	0.946	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	14505099	2R_14505099_SNP [dm3] 2R_18617594_SNP [dm6]	G	T	2.300e^-4	0.946	SYNONYMOUS_CODING CG5493 UTR_3_PRIME CG5327
2L	3750989	2L_3750989_SNP [dm3] 2L_3750989_SNP [dm6]	G	C	2.300e^-4	0.946	INTRON CG10019
3L	5063325	3L_5063325_SNP [dm3] 3L_5063325_SNP [dm6]	T	C	2.308e^-4	0.946	INTRON Con
2R	16751217	2R_16751217_SNP [dm3] 2R_20863712_SNP [dm6]	T	A	2.315e^-4	0.946	UPSTREAM CG15227 INTERGENIC
2L	2545890	2L_2545890_INS [dm3] 2L_2545890_INS [dm6]	A	AGTTTTTTA	2.315e^-4	0.946	INTERGENIC
3R	22261705	3R_22261705_SNP [dm3] 3R_26435983_SNP [dm6]	G	A	2.318e^-4	0.946	INTERGENIC
2L	7107144	2L_7107144_SNP [dm3] 2L_7107144_SNP [dm6]	G	A	2.320e^-4	0.946	SYNONYMOUS_CODING Pvf3
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	2.321e^-4	0.946	INTRON 5-HT1A
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	2.322e^-4	0.946	INTERGENIC
X	11438528	X_11438528_SNP [dm3] X_11544495_SNP [dm6]	A	G	2.326e^-4	0.946	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15751790	2R_15751790_SNP [dm3] 2R_19864285_SNP [dm6]	C	A	2.330e^-4	0.946	UPSTREAM Obp56i INTERGENIC
X	7962630	X_7962630_SNP [dm3] X_8068597_SNP [dm6]	G	T	2.336e^-4	0.946	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad
2R	5790017	2R_5790017_SNP [dm3] 2R_9902512_SNP [dm6]	A	T	2.337e^-4	0.946	INTRON CG1441	TF binding site mE1_TFBS_cad
3R	24602710	3R_24602710_SNP [dm3] 3R_28776988_SNP [dm6]	T	C	2.337e^-4	0.946	UPSTREAM CR44952 INTERGENIC
3L	829093	3L_829093_SNP [dm3] 3L_829093_SNP [dm6]	G	A	2.358e^-4	0.946	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 DOWNSTREAM snoRNA:Me5.8S-G74 EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15203319	3L_15203319_SNP [dm3] 3L_15210219_SNP [dm6]	T	A	2.362e^-4	0.946	INTERGENIC
X	16802166	X_16802166_SNP [dm3] X_16908133_SNP [dm6]	A	T	2.363e^-4	0.946	INTRON CR44754
3L	2082383	3L_2082383_SNP [dm3] 3L_2082383_SNP [dm6]	C	T	2.368e^-4	0.946	SYNONYMOUS_CODING sls INTRON sls
3L	2919553	3L_2919553_SNP [dm3] 3L_2919553_SNP [dm6]	A	T	2.371e^-4	0.946	INTRON Shab
2L	22609381	2L_22609381_SNP [dm3] 2L_22716649_SNP [dm6]	A	G	2.377e^-4	0.946	INTRON CG40006
X	9472691	X_9472691_SNP [dm3] X_9578658_SNP [dm6]	C	T	2.384e^-4	0.946	INTRON CG32699	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8348656	2R_8348656_SNP [dm3] 2R_12461151_SNP [dm6]	T	A	2.387e^-4	0.946	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	22636755	2L_22636755_SNP [dm3] 2L_22744023_SNP [dm6]	T	C	2.400e^-4	0.946	INTRON CG40006
3L	18924323	3L_18924323_INS [dm3] 3L_18931223_INS [dm6]	A	AAT	2.404e^-4	0.946	INTRON CG32204	TF binding site mE1_TFBS_inv
2R	13552041	2R_13552041_SNP [dm3] 2R_17664536_SNP [dm6]	A	C	2.405e^-4	0.946	INTRON CCHa1-R
2R	7473528	2R_7473528_SNP [dm3] 2R_11586023_SNP [dm6]	G	A	2.408e^-4	0.946	SYNONYMOUS_CODING tou
3L	5032925	3L_5032925_SNP [dm3] 3L_5032925_SNP [dm6]	T	G	2.409e^-4	0.946	INTRON Con	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12420872	3L_12420872_SNP [dm3] 3L_12427772_SNP [dm6]	G	A	2.418e^-4	0.946	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	18924275	3L_18924275_SNP [dm3] 3L_18931175_SNP [dm6]	C	T	2.419e^-4	0.946	INTRON CG32204
2R	17151975	2R_17151975_SNP [dm3] 2R_21264470_SNP [dm6]	G	C	2.429e^-4	0.946	SYNONYMOUS_CODING Rgk3 DOWNSTREAM CG30391 INTRON Rgk3
X	14305500	X_14305500_SNP [dm3] X_14411467_SNP [dm6]	G	A	2.431e^-4	0.946	INTRON dpr8
2R	13901803	2R_13901803_DEL [dm3] 2R_18014298_DEL [dm6]	CGT	C	2.433e^-4	0.946	INTERGENIC
2R	6750764	2R_6750764_SNP [dm3] 2R_10863259_SNP [dm6]	G	A	2.443e^-4	0.946	INTRON CG30015
3R	8213044	3R_8213044_SNP [dm3] 3R_12387322_SNP [dm6]	C	T	2.446e^-4	0.946	UPSTREAM CG33098 INTRON CG34402 & 1 other
3R	11745888	3R_11745888_SNP [dm3] 3R_15920166_SNP [dm6]	C	A	2.452e^-4	0.946	UPSTREAM CG4221 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15471921	3L_15471921_SNP [dm3] 3L_15478821_SNP [dm6]	A	C	2.454e^-4	0.946	INTERGENIC
2R	16750644	2R_16750644_SNP [dm3] 2R_20863139_SNP [dm6]	C	A	2.454e^-4	0.946	UPSTREAM CG15227 INTERGENIC
2R	17966754	2R_17966754_SNP [dm3] 2R_22079249_SNP [dm6]	T	C	2.456e^-4	0.946	UTR_3_PRIME GlcT-1 UPSTREAM Synj
3L	6097998	3L_6097998_SNP [dm3] 3L_6104898_SNP [dm6]	A	T	2.456e^-4	0.946	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25335046	3R_25335046_SNP [dm3] 3R_29509324_SNP [dm6]	T	C	2.471e^-4	0.949	INTERGENIC
2R	17150888	2R_17150888_SNP [dm3] 2R_21263383_SNP [dm6]	A	C	2.475e^-4	0.949	INTRON Rgk3
3L	18473937	3L_18473937_SNP [dm3] 3L_18480837_SNP [dm6]	G	A	2.481e^-4	0.949	INTERGENIC
2R	13917987	2R_13917987_SNP [dm3] 2R_18030482_SNP [dm6]	A	T	2.484e^-4	0.949	INTERGENIC
2R	5018609	2R_5018609_SNP [dm3] 2R_9131104_SNP [dm6]	C	T	2.498e^-4	0.949	INTRON CG18659	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	761992	2L_761992_SNP [dm3] 2L_761992_SNP [dm6]	C	T	2.508e^-4	0.949	UTR_3_PRIME GABA-B-R3
X	571471	X_571471_SNP [dm3] X_677438_SNP [dm6]	T	C	2.510e^-4	0.949	INTERGENIC
2R	11438928	2R_11438928_SNP [dm3] 2R_15551423_SNP [dm6]	G	C	2.519e^-4	0.949	INTERGENIC
3L	11848606	3L_11848606_SNP [dm3] 3L_11855506_SNP [dm6]	G	A	2.522e^-4	0.949	INTRON CG44837
3L	12050013	3L_12050013_SNP [dm3] 3L_12056913_SNP [dm6]	C	T	2.526e^-4	0.949	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2887489	3R_2887489_SNP [dm3] 3R_7061767_SNP [dm6]	G	T	2.529e^-4	0.949	NON_SYNONYMOUS_CODING djl UPSTREAM CG1988
2L	2134552	2L_2134552_SNP [dm3] 2L_2134552_SNP [dm6]	T	C	2.539e^-4	0.949	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22696118	3R_22696118_SNP [dm3] 3R_26870396_SNP [dm6]	T	C	2.539e^-4	0.949	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	8560286	3R_8560286_SNP [dm3] 3R_12734564_SNP [dm6]	C	T	2.539e^-4	0.949	INTERGENIC
3R	8560942	3R_8560942_MNP [dm3] 3R_12735220_MNP [dm6]	AAG	TTT	2.541e^-4	0.949	INTERGENIC
2L	14502886	2L_14502886_INS [dm3] 2L_14502886_INS [dm6]	T	TATT	2.552e^-4	0.949	INTERGENIC
3R	8799931	3R_8799931_SNP [dm3] 3R_12974209_SNP [dm6]	T	G	2.559e^-4	0.949	INTRON CG7381
2L	8852907	2L_8852907_SNP [dm3] 2L_8852907_SNP [dm6]	A	G	2.565e^-4	0.949	UPSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11790745	3L_11790745_SNP [dm3] 3L_11797645_SNP [dm6]	T	A	2.576e^-4	0.949	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	20428188	3R_20428188_SNP [dm3] 3R_24602466_SNP [dm6]	T	A	2.578e^-4	0.949	INTRON mld
2R	12479002	2R_12479002_DEL [dm3] 2R_16591497_DEL [dm6]	AAA	A	2.596e^-4	0.949	INTRON CG8306	TF binding site mE1_TFBS_sens
2R	11727793	2R_11727793_SNP [dm3] 2R_15840288_SNP [dm6]	C	T	2.598e^-4	0.949	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	9459779	X_9459779_SNP [dm3] X_9565746_SNP [dm6]	G	T	2.598e^-4	0.949	SPLICE_SITE_REGION Cubn INTRON Cubn
3L	6333308	3L_6333308_DEL [dm3] 3L_6340208_DEL [dm6]	TCATGAGTGCATTT...	T	2.599e^-4	0.949	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
X	9435202	X_9435202_SNP [dm3] X_9541169_SNP [dm6]	T	C	2.601e^-4	0.949	INTRON CG32700
2R	12853844	2R_12853844_SNP [dm3] 2R_16966339_SNP [dm6]	T	C	2.606e^-4	0.949	INTERGENIC
3L	6333356	3L_6333356_SNP [dm3] 3L_6340256_SNP [dm6]	A	C	2.606e^-4	0.949	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
X	5512990	X_5512990_SNP [dm3] X_5618957_SNP [dm6]	T	C	2.608e^-4	0.949	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
2R	4755613	2R_4755613_SNP [dm3] 2R_8868108_SNP [dm6]	C	T	2.610e^-4	0.949	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7300250	3L_7300250_SNP [dm3] 3L_7307150_SNP [dm6]	T	A	2.617e^-4	0.949	INTRON unc-13-4A
2R	13530118	2R_13530118_SNP [dm3] 2R_17642613_SNP [dm6]	C	T	2.629e^-4	0.949	INTERGENIC
3L	10552548	3L_10552548_INS [dm3] 3L_10559448_INS [dm6]	A	ATACACACGAGCACACA...	2.634e^-4	0.949	UPSTREAM CG6527 INTRON A2bp1
2L	1054444	2L_1054444_DEL [dm3] 2L_1054444_DEL [dm6]	TTT	T	2.642e^-4	0.949	INTRON S	TF binding site BDTNP1_TFBS_twi
3R	25114878	3R_25114878_SNP [dm3] 3R_29289156_SNP [dm6]	G	T	2.646e^-4	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5785120	2R_5785120_SNP [dm3] 2R_9897615_SNP [dm6]	C	T	2.650e^-4	0.949	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2012244	2L_2012244_SNP [dm3] 2L_2012244_SNP [dm6]	C	T	2.659e^-4	0.949	DOWNSTREAM tRNA:CR31669 INTRON CG4238
2R	13899504	2R_13899504_SNP [dm3] 2R_18011999_SNP [dm6]	G	A	2.661e^-4	0.949	INTERGENIC
X	9455690	X_9455690_SNP [dm3] X_9561657_SNP [dm6]	C	T	2.665e^-4	0.949	INTRON Cubn	TF binding site mE1_TFBS_chinmo
2L	8716029	2L_8716029_DEL [dm3] 2L_8716029_DEL [dm6]	AA	A	2.667e^-4	0.949	INTRON raw
2L	8716032	2L_8716032_SNP [dm3] 2L_8716032_SNP [dm6]	A	C	2.676e^-4	0.949	INTRON raw
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.679e^-4	0.949	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22626562	2L_22626562_SNP [dm3] 2L_22733830_SNP [dm6]	A	T	2.680e^-4	0.949	INTRON CG40006
3R	16858157	3R_16858157_SNP [dm3] 3R_21032435_SNP [dm6]	A	T	2.682e^-4	0.949	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22692231	2L_22692231_SNP [dm3] 2L_22799499_SNP [dm6]	A	G	2.698e^-4	0.949	INTERGENIC
2R	5735502	2R_5735502_SNP [dm3] 2R_9847997_SNP [dm6]	C	A	2.716e^-4	0.949	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	18548448	2R_18548448_SNP [dm3] 2R_22660943_SNP [dm6]	G	C	2.721e^-4	0.949	UPSTREAM CG42566 DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	2.721e^-4	0.949	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	3350812	2R_3350812_SNP [dm3] 2R_7463307_SNP [dm6]	C	A	2.728e^-4	0.949	UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13901771	2R_13901771_SNP [dm3] 2R_18014266_SNP [dm6]	C	T	2.729e^-4	0.949	INTERGENIC
3R	16733768	3R_16733768_SNP [dm3] 3R_20908046_SNP [dm6]	A	G	2.739e^-4	0.949	SYNONYMOUS_CODING CG5621 UTR_3_PRIME CG5621
2L	744083	2L_744083_SNP [dm3] 2L_744083_SNP [dm6]	C	A	2.740e^-4	0.949	SPLICE_SITE_DONOR Eaat2 INTRON Eaat2
3L	10822789	3L_10822789_SNP [dm3] 3L_10829689_SNP [dm6]	A	C	2.745e^-4	0.949	INTERGENIC
2R	20156684	2R_20156684_SNP [dm3] 2R_24269161_SNP [dm6]	G	A	2.748e^-4	0.949	START_GAINED CG13577 UTR_5_PRIME CG13577 UPSTREAM CG13577
X	14062019	X_14062019_SNP [dm3] X_14167986_SNP [dm6]	T	C	2.756e^-4	0.949	INTERGENIC
3L	12630125	3L_12630125_SNP [dm3] 3L_12637025_SNP [dm6]	C	G	2.773e^-4	0.949	INTRON CR32111
2L	7510028	2L_7510028_SNP [dm3] 2L_7510028_SNP [dm6]	T	A	2.776e^-4	0.949	INTRON RapGAP1
2L	1996186	2L_1996186_SNP [dm3] 2L_1996186_SNP [dm6]	G	C	2.781e^-4	0.949	DOWNSTREAM CG33543 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	12050865	3L_12050865_SNP [dm3] 3L_12057765_SNP [dm6]	C	T	2.781e^-4	0.949	INTRON rols
3L	15505500	3L_15505500_SNP [dm3] 3L_15512400_SNP [dm6]	A	G	2.781e^-4	0.949	UTR_3_PRIME Eip71CD INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13568456	2R_13568456_SNP [dm3] 2R_17680951_SNP [dm6]	A	C	2.786e^-4	0.949	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2919562	3L_2919562_SNP [dm3] 3L_2919562_SNP [dm6]	A	G	2.792e^-4	0.949	INTRON Shab
3L	7002410	3L_7002410_SNP [dm3] 3L_7009310_SNP [dm6]	C	T	2.795e^-4	0.949	INTRON Mp
3R	15189320	3R_15189320_SNP [dm3] 3R_19363598_SNP [dm6]	C	G	2.796e^-4	0.949	INTERGENIC
2L	13707253	2L_13707253_SNP [dm3] 2L_13707253_SNP [dm6]	T	C	2.802e^-4	0.949	UPSTREAM CG7311 INTRON CG31814
2L	2012422	2L_2012422_SNP [dm3] 2L_2012422_SNP [dm6]	G	A	2.824e^-4	0.949	DOWNSTREAM tRNA:CR31669 INTRON CG4238
3L	15476412	3L_15476412_SNP [dm3] 3L_15483312_SNP [dm6]	G	A	2.830e^-4	0.949	INTERGENIC
3L	19665194	3L_19665194_SNP [dm3] 3L_19672094_SNP [dm6]	T	C	2.835e^-4	0.949	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12728277	2L_12728277_SNP [dm3] 2L_12728277_SNP [dm6]	T	G	2.846e^-4	0.949	INTRON MRP
2L	8716024	2L_8716024_SNP [dm3] 2L_8716024_SNP [dm6]	G	C	2.847e^-4	0.949	INTRON raw
2R	13568458	2R_13568458_SNP [dm3] 2R_17680953_SNP [dm6]	T	A	2.848e^-4	0.949	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	2.852e^-4	0.949	INTERGENIC
2R	15716284	2R_15716284_SNP [dm3] 2R_19828779_SNP [dm6]	T	C	2.855e^-4	0.949	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2635325	2L_2635325_DEL [dm3] 2L_2635325_DEL [dm6]	CAC	C	2.856e^-4	0.949	INTERGENIC
2R	6972862	2R_6972862_DEL [dm3] 2R_11085357_DEL [dm6]	CAGCGGGCTGC...	C	2.858e^-4	0.949	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22583989	3R_22583989_SNP [dm3] 3R_26758267_SNP [dm6]	A	G	2.867e^-4	0.949	UPSTREAM CR45562 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17146947	X_17146947_INS [dm3] X_17252914_INS [dm6]	A	AA	2.874e^-4	0.949	INTRON f	TF binding site BDTNP1_TFBS_twi
2R	17976284	2R_17976284_SNP [dm3] 2R_22088779_SNP [dm6]	C	A	2.876e^-4	0.949	UPSTREAM CG13502 DOWNSTREAM CG43393 INTERGENIC
2R	9183181	2R_9183181_SNP [dm3] 2R_13295676_SNP [dm6]	C	T	2.879e^-4	0.949	START_GAINED Dh31-R UTR_5_PRIME Dh31-R
X	17026782	X_17026782_SNP [dm3] X_17132749_SNP [dm6]	A	G	2.888e^-4	0.949	UPSTREAM CG5004 INTRON CG5004
2L	9257613	2L_9257613_SNP [dm3] 2L_9257613_SNP [dm6]	A	G	2.891e^-4	0.949	INTRON Ggamma30A
3R	16324797	3R_16324797_SNP [dm3] 3R_20499075_SNP [dm6]	A	G	2.891e^-4	0.949	DOWNSTREAM Dic2 INTERGENIC
3R	26080672	3R_26080672_SNP [dm3] 3R_30254950_SNP [dm6]	G	A	2.896e^-4	0.949	DOWNSTREAM CG18404 INTERGENIC
3L	12050065	3L_12050065_SNP [dm3] 3L_12056965_SNP [dm6]	C	A	2.898e^-4	0.949	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12325242	3R_12325242_SNP [dm3] 3R_16499520_SNP [dm6]	G	A	2.899e^-4	0.949	UPSTREAM Gr89a INTRON decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12452876	3R_12452876_SNP [dm3] 3R_16627154_SNP [dm6]	A	G	2.902e^-4	0.949	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16353348	2R_16353348_SNP [dm3] 2R_20465843_SNP [dm6]	G	A	2.908e^-4	0.949	INTRON CG12484
2R	3344777	2R_3344777_INS [dm3] 2R_7457272_INS [dm6]	C	CTTCGAATCGTTACT...	2.913e^-4	0.949	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16353362	2R_16353362_SNP [dm3] 2R_20465857_SNP [dm6]	G	A	2.916e^-4	0.949	INTRON CG12484
3L	5568361	3L_5568361_SNP [dm3] 3L_5575261_SNP [dm6]	A	C	2.916e^-4	0.949	UPSTREAM Msr-110 INTRON Msr-110
2R	17024754	2R_17024754_SNP [dm3] 2R_21137249_SNP [dm6]	G	A	2.919e^-4	0.949	INTRON Magi
3L	18924354	3L_18924354_SNP [dm3] 3L_18931254_SNP [dm6]	T	A	2.924e^-4	0.949	INTRON CG32204	TF binding site mE1_TFBS_inv
X	15071523	X_15071523_SNP [dm3] X_15177490_SNP [dm6]	C	G	2.930e^-4	0.949	INTRON CG43737
2L	10915941	2L_10915941_SNP [dm3] 2L_10915941_SNP [dm6]	G	A	2.973e^-4	0.956	INTERGENIC
2R	14222040	2R_14222040_INS [dm3] 2R_18334535_INS [dm6]	A	AAAATCACATA...	3.000e^-4	0.956	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1642230	2R_1642230_SNP [dm3] 2R_5754725_SNP [dm6]	C	T	3.002e^-4	0.956	NON_SYNONYMOUS_CODING l_2_09851	TF binding site mE1_TFBS_cad
X	9210848	X_9210848_SNP [dm3] X_9316815_SNP [dm6]	A	C	3.002e^-4	0.956	INTERGENIC
2L	7801712	2L_7801712_INS [dm3] 2L_7801712_INS [dm6]	A	AGA	3.021e^-4	0.956	UTR_3_PRIME r2d2 & 1 other DOWNSTREAM cdc14 & 1 other
2L	624592	2L_624592_SNP [dm3] 2L_624592_SNP [dm6]	A	T	3.023e^-4	0.956	UPSTREAM lectin-21Ca & 1 other DOWNSTREAM CR44797 INTERGENIC
3L	18924322	3L_18924322_SNP [dm3] 3L_18931222_SNP [dm6]	T	A	3.027e^-4	0.956	INTRON CG32204	TF binding site mE1_TFBS_inv
3R	13818362	3R_13818362_SNP [dm3] 3R_17992640_SNP [dm6]	C	G	3.027e^-4	0.956	INTRON cpo
3R	12573008	3R_12573008_SNP [dm3] 3R_16747286_SNP [dm6]	C	T	3.030e^-4	0.956	UPSTREAM bxd INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	15203334	3L_15203334_SNP [dm3] 3L_15210234_SNP [dm6]	T	G	3.038e^-4	0.956	INTERGENIC
3L	18475744	3L_18475744_SNP [dm3] 3L_18482644_SNP [dm6]	G	A	3.038e^-4	0.956	INTERGENIC
X	5512980	X_5512980_SNP [dm3] X_5618947_SNP [dm6]	T	G	3.044e^-4	0.956	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
2R	13551081	2R_13551081_SNP [dm3] 2R_17663576_SNP [dm6]	G	C	3.050e^-4	0.956	INTRON CCHa1-R
2R	5784138	2R_5784138_SNP [dm3] 2R_9896633_SNP [dm6]	A	G	3.052e^-4	0.956	NON_SYNONYMOUS_CODING CG30007
3R	8236417	3R_8236417_SNP [dm3] 3R_12410695_SNP [dm6]	C	T	3.058e^-4	0.956	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3354608	2R_3354608_SNP [dm3] 2R_7467103_SNP [dm6]	T	C	3.059e^-4	0.956	UTR_3_PRIME Aldh-III UPSTREAM p47 INTRON Aldh-III	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	26174150	3R_26174150_SNP [dm3] 3R_30348428_SNP [dm6]	C	T	3.060e^-4	0.956	INTRON hdc
X	14184869	X_14184869_SNP [dm3] X_14290836_SNP [dm6]	G	C	3.063e^-4	0.956	INTERGENIC
3R	22060162	3R_22060162_SNP [dm3] 3R_26234440_SNP [dm6]	A	C	3.064e^-4	0.956	UTR_3_PRIME CG12290 UPSTREAM CR42745
X	7663498	X_7663498_SNP [dm3] X_7769465_SNP [dm6]	T	A	3.067e^-4	0.956	DOWNSTREAM CG34338 INTERGENIC
2R	13633716	2R_13633716_SNP [dm3] 2R_17746211_SNP [dm6]	T	C	3.068e^-4	0.956	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2L	8174062	2L_8174062_SNP [dm3] 2L_8174062_SNP [dm6]	A	G	3.071e^-4	0.956	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19626446	2R_19626446_SNP [dm3] 2R_23738923_SNP [dm6]	G	T	3.074e^-4	0.956	INTRON egl
2L	13707230	2L_13707230_SNP [dm3] 2L_13707230_SNP [dm6]	T	A	3.076e^-4	0.956	UPSTREAM CG7311 INTRON CG31814
3R	8560543	3R_8560543_SNP [dm3] 3R_12734821_SNP [dm6]	G	C	3.078e^-4	0.956	INTERGENIC
2L	8027900	2L_8027900_SNP [dm3] 2L_8027900_SNP [dm6]	A	G	3.099e^-4	0.961	SYNONYMOUS_CODING CG7367
2R	5021272	2R_5021272_SNP [dm3] 2R_9133767_SNP [dm6]	C	T	3.111e^-4	0.961	SYNONYMOUS_CODING Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11639782	3R_11639782_SNP [dm3] 3R_15814060_SNP [dm6]	C	T	3.115e^-4	0.961	INTRON alpha-Man-IIb
2L	2545533	2L_2545533_SNP [dm3] 2L_2545533_SNP [dm6]	T	C	3.115e^-4	0.961	INTERGENIC
2L	6848388	2L_6848388_DEL [dm3] 2L_6848388_DEL [dm6]	AA	A	3.120e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	7994659	X_7994659_INS [dm3] X_8100626_INS [dm6]	T	TTT	3.129e^-4	0.962	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	15270960	2R_15270960_SNP [dm3] 2R_19383455_SNP [dm6]	G	A	3.136e^-4	0.963	INTRON CG10073
3L	18924368	3L_18924368_DEL [dm3] 3L_18931268_DEL [dm6]	AGG	A	3.150e^-4	0.965	INTRON CG32204	TF binding site mE1_TFBS_inv
2L	13107224	2L_13107224_SNP [dm3] 2L_13107224_SNP [dm6]	G	A	3.176e^-4	0.967	INTRON CG5142
2L	13107227	2L_13107227_SNP [dm3] 2L_13107227_SNP [dm6]	A	G	3.176e^-4	0.967	INTRON CG5142	TF binding site mE1_TFBS_chinmo
3L	8473584	3L_8473584_SNP [dm3] 3L_8480484_SNP [dm6]	A	G	3.196e^-4	0.967	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	13043719	3L_13043719_DEL [dm3] 3L_13050619_DEL [dm6]	TCTTCTAGATATCATTCCTA...	T	3.213e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4903477	2L_4903477_SNP [dm3] 2L_4903477_SNP [dm6]	C	T	3.217e^-4	0.967	UTR_3_PRIME CG3036 DOWNSTREAM CG2837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8154732	3R_8154732_SNP [dm3] 3R_12329010_SNP [dm6]	C	G	3.225e^-4	0.967	UPSTREAM CR45583 INTERGENIC
3L	15472093	3L_15472093_SNP [dm3] 3L_15478993_SNP [dm6]	A	G	3.226e^-4	0.967	INTERGENIC
3R	19095537	3R_19095537_SNP [dm3] 3R_23269815_SNP [dm6]	G	C	3.231e^-4	0.967	NON_SYNONYMOUS_CODING orb INTRON orb	TF binding site mE1_TFBS_cad
3R	22066520	3R_22066520_SNP [dm3] 3R_26240798_SNP [dm6]	G	A	3.236e^-4	0.967	INTRON CR42745
3R	25155917	3R_25155917_SNP [dm3] 3R_29330195_SNP [dm6]	G	T	3.256e^-4	0.967	INTERGENIC
2L	13107247	2L_13107247_SNP [dm3] 2L_13107247_SNP [dm6]	T	A	3.260e^-4	0.967	INTRON CG5142	TF binding site mE1_TFBS_chinmo
2L	13107254	2L_13107254_SNP [dm3] 2L_13107254_SNP [dm6]	T	A	3.260e^-4	0.967	INTRON CG5142	TF binding site mE1_TFBS_chinmo
2R	1848498	2R_1848498_SNP [dm3] 2R_5960993_SNP [dm6]	A	G	3.264e^-4	0.967	UTR_3_PRIME CG7881 DOWNSTREAM CG7881 & 1 other
3L	18924343	3L_18924343_SNP [dm3] 3L_18931243_SNP [dm6]	C	A	3.271e^-4	0.967	INTRON CG32204	TF binding site mE1_TFBS_inv
2L	11970122	2L_11970122_SNP [dm3] 2L_11970122_SNP [dm6]	A	G	3.271e^-4	0.967	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15361948	2R_15361948_SNP [dm3] 2R_19474443_SNP [dm6]	T	C	3.272e^-4	0.967	INTRON par-1
2R	20229884	2R_20229884_SNP [dm3] 2R_24342361_SNP [dm6]	G	T	3.283e^-4	0.967	UPSTREAM bs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	22696172	3R_22696172_SNP [dm3] 3R_26870450_SNP [dm6]	A	G	3.305e^-4	0.967	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1271790	2L_1271790_SNP [dm3] 2L_1271790_SNP [dm6]	C	G	3.307e^-4	0.967	INTRON robo3
2L	15736082	2L_15736082_SNP [dm3] 2L_15736082_SNP [dm6]	A	G	3.317e^-4	0.967	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2763968	3L_2763968_SNP [dm3] 3L_2763968_SNP [dm6]	T	C	3.333e^-4	0.967	INTRON Mrtf
2R	4752490	2R_4752490_SNP [dm3] 2R_8864985_SNP [dm6]	G	C	3.334e^-4	0.967	INTRON RyR
2L	4930121	2L_4930121_SNP [dm3] 2L_4930121_SNP [dm6]	A	T	3.338e^-4	0.967	INTRON hoe1
2R	2668530	2R_2668530_SNP [dm3] 2R_6781025_SNP [dm6]	A	C	3.338e^-4	0.967	SYNONYMOUS_CODING Cyp6a2 INTRON Epac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6928989	2R_6928989_SNP [dm3] 2R_11041484_SNP [dm6]	G	A	3.342e^-4	0.967	INTRON luna
2L	22636855	2L_22636855_SNP [dm3] 2L_22744123_SNP [dm6]	G	A	3.343e^-4	0.967	INTRON CG40006
3L	6098320	3L_6098320_SNP [dm3] 3L_6105220_SNP [dm6]	G	A	3.346e^-4	0.967	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5735512	2R_5735512_SNP [dm3] 2R_9848007_SNP [dm6]	C	T	3.348e^-4	0.967	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8154836	3R_8154836_SNP [dm3] 3R_12329114_SNP [dm6]	A	G	3.352e^-4	0.967	UPSTREAM CR45583 INTERGENIC
3R	25854196	3R_25854196_SNP [dm3] 3R_30028474_SNP [dm6]	G	T	3.353e^-4	0.967	INTRON Axn
3R	18167226	3R_18167226_SNP [dm3] 3R_22341504_SNP [dm6]	G	A	3.363e^-4	0.967	INTRON CG5386
X	9453587	X_9453587_SNP [dm3] X_9559554_SNP [dm6]	C	T	3.372e^-4	0.967	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_sens
3L	12050043	3L_12050043_SNP [dm3] 3L_12056943_SNP [dm6]	C	G	3.381e^-4	0.967	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1200728	2L_1200728_SNP [dm3] 2L_1200728_SNP [dm6]	A	G	3.383e^-4	0.967	START_GAINED CG5011 UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	17272502	2R_17272502_SNP [dm3] 2R_21384997_SNP [dm6]	A	G	3.404e^-4	0.967	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	10079180	3R_10079180_SNP [dm3] 3R_14253458_SNP [dm6]	T	C	3.404e^-4	0.967	INTRON Aats-met
2L	22641409	2L_22641409_SNP [dm3] 2L_22748677_SNP [dm6]	A	G	3.411e^-4	0.967	INTRON CG40006
2L	521495	2L_521495_SNP [dm3] 2L_521495_SNP [dm6]	G	A	3.420e^-4	0.967	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2763944	3L_2763944_SNP [dm3] 3L_2763944_SNP [dm6]	G	A	3.423e^-4	0.967	INTRON Mrtf
2R	12175448	2R_12175448_SNP [dm3] 2R_16287943_SNP [dm6]	C	T	3.428e^-4	0.967	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
2R	18882268	2R_18882268_SNP [dm3] 2R_22994745_SNP [dm6]	C	A	3.435e^-4	0.967	NON_SYNONYMOUS_CODING CG9896 INTRON twi
3R	12382277	3R_12382277_DEL [dm3] 3R_16556555_DEL [dm6]	TCC	T	3.439e^-4	0.967	INTRON CG42342	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1270479	2L_1270479_SNP [dm3] 2L_1270479_SNP [dm6]	T	A	3.444e^-4	0.967	INTRON robo3
3L	820875	3L_820875_SNP [dm3] 3L_820875_SNP [dm6]	C	T	3.450e^-4	0.967	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12630168	3L_12630168_SNP [dm3] 3L_12637068_SNP [dm6]	C	T	3.454e^-4	0.967	INTRON CR32111
2L	4009376	2L_4009376_SNP [dm3] 2L_4009376_SNP [dm6]	G	A	3.459e^-4	0.967	DOWNSTREAM CG43774 INTERGENIC
2L	15044849	2L_15044849_DEL [dm3] 2L_15044849_DEL [dm6]	GTTTGTT	C	3.464e^-4	0.967	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs
X	17074180	X_17074180_SNP [dm3] X_17180147_SNP [dm6]	T	C	3.467e^-4	0.967	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5831371	2R_5831371_SNP [dm3] 2R_9943866_SNP [dm6]	A	T	3.474e^-4	0.967	UTR_5_PRIME Mef2 INTRON Mef2
3L	12050047	3L_12050047_SNP [dm3] 3L_12056947_SNP [dm6]	G	C	3.476e^-4	0.967	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1318497	2R_1318497_SNP [dm3] 2R_5430992_SNP [dm6]	T	A	3.477e^-4	0.967	INTRON laccase2	transposable element FlyBase
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	3.478e^-4	0.967	UPSTREAM CR45374 INTERGENIC
2R	7956096	2R_7956096_SNP [dm3] 2R_12068591_SNP [dm6]	A	G	3.478e^-4	0.967	INTRON CG8888
3R	8203025	3R_8203025_SNP [dm3] 3R_12377303_SNP [dm6]	A	G	3.497e^-4	0.967	SYNONYMOUS_CODING GstD6 DOWNSTREAM GstD5
2L	22627816	2L_22627816_SNP [dm3] 2L_22735084_SNP [dm6]	T	C	3.499e^-4	0.967	INTRON CG40006
2R	16123366	2R_16123366_SNP [dm3] 2R_20235861_SNP [dm6]	C	A	3.501e^-4	0.967	UTR_3_PRIME CG44625 UPSTREAM CG11099 DOWNSTREAM CG11044 & 1 other
2R	15885873	2R_15885873_SNP [dm3] 2R_19998368_SNP [dm6]	A	G	3.507e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18924361	3L_18924361_DEL [dm3] 3L_18931261_DEL [dm6]	ATT	A	3.514e^-4	0.967	INTRON CG32204	TF binding site mE1_TFBS_inv
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	3.518e^-4	0.967	INTERGENIC
2L	2545984	2L_2545984_INS [dm3] 2L_2545984_INS [dm6]	T	TAGTTTTAGTTAGTTAGTTC...	3.519e^-4	0.967	INTERGENIC
2R	17024748	2R_17024748_SNP [dm3] 2R_21137243_SNP [dm6]	T	A	3.519e^-4	0.967	INTRON Magi
2L	3632429	2L_3632429_SNP [dm3] 2L_3632429_SNP [dm6]	G	A	3.540e^-4	0.967	UPSTREAM for INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17029792	2L_17029792_SNP [dm3] 2L_17029792_SNP [dm6]	T	C	3.548e^-4	0.967	INTERGENIC
3L	872874	3L_872874_SNP [dm3] 3L_872874_SNP [dm6]	C	T	3.552e^-4	0.967	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5785090	2R_5785090_SNP [dm3] 2R_9897585_SNP [dm6]	T	C	3.558e^-4	0.967	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12753808	2L_12753808_SNP [dm3] 2L_12753808_SNP [dm6]	A	G	3.561e^-4	0.967	INTERGENIC
2R	17706064	2R_17706064_SNP [dm3] 2R_21818559_SNP [dm6]	G	T	3.571e^-4	0.967	INTERGENIC
2R	5748355	2R_5748355_SNP [dm3] 2R_9860850_SNP [dm6]	G	C	3.577e^-4	0.967	UPSTREAM CR44293 & 1 other INTRON CG1516	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9989900	2L_9989900_SNP [dm3] 2L_9989900_SNP [dm6]	G	T	3.584e^-4	0.967	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19244649	2R_19244649_SNP [dm3] 2R_23357126_SNP [dm6]	G	T	3.585e^-4	0.967	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15503394	3L_15503394_DEL [dm3] 3L_15510294_DEL [dm6]	CCAAATTTCTTTAAA...	C	3.593e^-4	0.967	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	5734458	2R_5734458_SNP [dm3] 2R_9846953_SNP [dm6]	T	G	3.606e^-4	0.967	UPSTREAM Orc6 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10326151	X_10326151_SNP [dm3] X_10432118_SNP [dm6]	A	G	3.608e^-4	0.967	DOWNSTREAM CG12640 INTRON CG32683
3R	25114879	3R_25114879_SNP [dm3] 3R_29289157_SNP [dm6]	T	C	3.611e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13927539	2R_13927539_SNP [dm3] 2R_18040034_SNP [dm6]	A	T	3.618e^-4	0.967	INTERGENIC
2L	6490256	2L_6490256_SNP [dm3] 2L_6490256_SNP [dm6]	T	G	3.622e^-4	0.967	UPSTREAM CG31638 DOWNSTREAM epsilonCOP INTRON CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16868214	X_16868214_SNP [dm3] X_16974181_SNP [dm6]	T	C	3.624e^-4	0.967	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	22048371	3R_22048371_SNP [dm3] 3R_26222649_SNP [dm6]	G	C	3.626e^-4	0.967	INTERGENIC
3R	19304237	3R_19304237_SNP [dm3] 3R_23478515_SNP [dm6]	C	T	3.640e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17074177	X_17074177_SNP [dm3] X_17180144_SNP [dm6]	T	A	3.649e^-4	0.967	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	9459783	X_9459783_SNP [dm3] X_9565750_SNP [dm6]	G	A	3.653e^-4	0.967	INTRON Cubn
2L	22638383	2L_22638383_SNP [dm3] 2L_22745651_SNP [dm6]	G	A	3.655e^-4	0.967	INTRON CG40006
3R	7397733	3R_7397733_SNP [dm3] 3R_11572011_SNP [dm6]	A	C	3.658e^-4	0.967	INTRON Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12945698	2L_12945698_SNP [dm3] 2L_12945698_SNP [dm6]	C	A	3.663e^-4	0.967	INTERGENIC
2R	13920091	2R_13920091_SNP [dm3] 2R_18032586_SNP [dm6]	T	A	3.671e^-4	0.967	INTERGENIC
2R	2343850	2R_2343850_INS [dm3] 2R_6456345_INS [dm6]	A	AT	3.674e^-4	0.967	INTERGENIC	transposable element FlyBase
2L	7801422	2L_7801422_SNP [dm3] 2L_7801422_SNP [dm6]	C	T	3.678e^-4	0.967	NON_SYNONYMOUS_CODING r2d2 DOWNSTREAM cdc14
2R	5784919	2R_5784919_SNP [dm3] 2R_9897414_SNP [dm6]	A	C	3.688e^-4	0.967	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14657128	3R_14657128_SNP [dm3] 3R_18831406_SNP [dm6]	C	T	3.688e^-4	0.967	INTRON CG18208
2L	21945896	2L_21945896_SNP [dm3] 2L_21945896_SNP [dm6]	T	A	3.691e^-4	0.967	INTERGENIC
3R	26152884	3R_26152884_SNP [dm3] 3R_30327162_SNP [dm6]	C	T	3.692e^-4	0.967	INTRON hdc
2R	3344164	2R_3344164_SNP [dm3] 2R_7456659_SNP [dm6]	T	G	3.696e^-4	0.967	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7508652	2L_7508652_SNP [dm3] 2L_7508652_SNP [dm6]	C	T	3.702e^-4	0.967	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13777414	2R_13777414_SNP [dm3] 2R_17889909_SNP [dm6]	C	G	3.704e^-4	0.967	UTR_5_PRIME PPO1 INTRON Elk
2R	14041460	2R_14041460_SNP [dm3] 2R_18153955_SNP [dm6]	G	T	3.704e^-4	0.967	UTR_3_PRIME adp DOWNSTREAM lolal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15160751	2R_15160751_DEL [dm3] 2R_19273246_DEL [dm6]	GAA	G	3.704e^-4	0.967	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15160757	2R_15160757_INS [dm3] 2R_19273252_INS [dm6]	C	CC	3.704e^-4	0.967	INTRON rib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	16079444	X_16079444_SNP [dm3] X_16185411_SNP [dm6]	A	C	3.708e^-4	0.967	INTERGENIC
X	14060789	X_14060789_SNP [dm3] X_14166756_SNP [dm6]	C	T	3.712e^-4	0.967	INTERGENIC
X	14061116	X_14061116_SNP [dm3] X_14167083_SNP [dm6]	T	G	3.712e^-4	0.967	INTERGENIC
3R	8202734	3R_8202734_SNP [dm3] 3R_12377012_SNP [dm6]	G	T	3.716e^-4	0.967	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
2R	15758531	2R_15758531_SNP [dm3] 2R_19871026_SNP [dm6]	A	T	3.724e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	14185681	2R_14185681_SNP [dm3] 2R_18298176_SNP [dm6]	T	G	3.733e^-4	0.967	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
2R	19687186	2R_19687186_SNP [dm3] 2R_23799663_SNP [dm6]	A	C	3.734e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8209806	3R_8209806_SNP [dm3] 3R_12384084_SNP [dm6]	C	T	3.738e^-4	0.967	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	20426752	3R_20426752_SNP [dm3] 3R_24601030_SNP [dm6]	A	G	3.755e^-4	0.967	INTRON mld	TF binding site mE1_TFBS_HSA
X	9459793	X_9459793_INS [dm3] X_9565760_INS [dm6]	G	GTGCACA	3.769e^-4	0.967	INTRON Cubn
2R	16145990	2R_16145990_SNP [dm3] 2R_20258485_SNP [dm6]	A	G	3.776e^-4	0.967	NON_SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8410929	2R_8410929_SNP [dm3] 2R_12523424_SNP [dm6]	T	C	3.787e^-4	0.967	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5695825	3L_5695825_SNP [dm3] 3L_5702725_SNP [dm6]	T	G	3.788e^-4	0.967	INTRON sif
2L	8027903	2L_8027903_SNP [dm3] 2L_8027903_SNP [dm6]	C	A	3.792e^-4	0.967	NON_SYNONYMOUS_CODING CG7367
3R	16918049	3R_16918049_SNP [dm3] 3R_21092327_SNP [dm6]	A	G	3.794e^-4	0.967	INTRON RhoGAP93B & 1 other
2L	1926174	2L_1926174_SNP [dm3] 2L_1926174_SNP [dm6]	C	G	3.802e^-4	0.967	INTRON CG7337
3L	15420051	3L_15420051_SNP [dm3] 3L_15426951_SNP [dm6]	A	G	3.813e^-4	0.967	INTERGENIC
3L	3577150	3L_3577150_SNP [dm3] 3L_3577150_SNP [dm6]	T	G	3.820e^-4	0.967	INTRON Eip63E
3L	5566214	3L_5566214_SNP [dm3] 3L_5573114_SNP [dm6]	A	C	3.823e^-4	0.967	INTRON Msr-110
2L	18474992	2L_18474992_SNP [dm3] 2L_18474992_SNP [dm6]	G	A	3.825e^-4	0.967	INTRON CG10283
2R	390507	2R_390507_SNP [dm3] 2R_4503002_SNP [dm6]	A	T	3.830e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22626086	2L_22626086_SNP [dm3] 2L_22733354_SNP [dm6]	C	T	3.833e^-4	0.967	INTRON CG40006
2R	3343839	2R_3343839_SNP [dm3] 2R_7456334_SNP [dm6]	G	T	3.841e^-4	0.967	NON_SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20231107	2R_20231107_SNP [dm3] 2R_24343584_SNP [dm6]	C	G	3.844e^-4	0.967	UTR_5_PRIME bs UPSTREAM bs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	646587	2L_646587_SNP [dm3] 2L_646587_SNP [dm6]	G	T	3.846e^-4	0.967	INTRON ds
3L	17809222	3L_17809222_SNP [dm3] 3L_17816122_SNP [dm6]	A	G	3.847e^-4	0.967	SYNONYMOUS_CODING Ir75a
2R	13778621	2R_13778621_SNP [dm3] 2R_17891116_SNP [dm6]	C	A	3.861e^-4	0.967	INTRON Elk
3L	18924355	3L_18924355_SNP [dm3] 3L_18931255_SNP [dm6]	A	G	3.863e^-4	0.967	INTRON CG32204	TF binding site mE1_TFBS_inv
2R	13844280	2R_13844280_SNP [dm3] 2R_17956775_SNP [dm6]	G	C	3.869e^-4	0.967	UPSTREAM PpY-55A INTERGENIC
3L	2763975	3L_2763975_INS [dm3] 3L_2763975_INS [dm6]	A	AACGCTTTA	3.871e^-4	0.967	INTRON Mrtf
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	3.875e^-4	0.967	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
2R	15086523	2R_15086523_SNP [dm3] 2R_19199018_SNP [dm6]	G	C	3.885e^-4	0.967	INTRON hppy
2L	1200706	2L_1200706_SNP [dm3] 2L_1200706_SNP [dm6]	C	G	3.888e^-4	0.967	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
3R	16757546	3R_16757546_SNP [dm3] 3R_20931824_SNP [dm6]	G	T	3.890e^-4	0.967	INTRON CG31191
2R	3356271	2R_3356271_SNP [dm3] 2R_7468766_SNP [dm6]	T	C	3.898e^-4	0.967	INTRON Aldh-III
3R	23291390	3R_23291390_SNP [dm3] 3R_27465668_SNP [dm6]	G	A	3.901e^-4	0.967	NON_SYNONYMOUS_CODING CG13978
3R	19164949	3R_19164949_SNP [dm3] 3R_23339227_SNP [dm6]	G	A	3.903e^-4	0.967	INTRON pnt
2R	16336629	2R_16336629_SNP [dm3] 2R_20449124_SNP [dm6]	G	C	3.905e^-4	0.967	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	13930687	2R_13930687_SNP [dm3] 2R_18043182_SNP [dm6]	T	C	3.906e^-4	0.967	SYNONYMOUS_CODING CG5773 DOWNSTREAM CG5770
2R	14054745	2R_14054745_SNP [dm3] 2R_18167240_SNP [dm6]	G	A	3.909e^-4	0.967	UTR_5_PRIME CG42518 UPSTREAM CG42518 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	12554240	2R_12554240_SNP [dm3] 2R_16666735_SNP [dm6]	C	T	3.911e^-4	0.967	INTRON Picot
2R	12554241	2R_12554241_SNP [dm3] 2R_16666736_SNP [dm6]	C	T	3.917e^-4	0.967	INTRON Picot
3R	24234088	3R_24234088_SNP [dm3] 3R_28408366_SNP [dm6]	T	C	3.920e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8350023	3R_8350023_SNP [dm3] 3R_12524301_SNP [dm6]	C	A	3.920e^-4	0.967	INTRON Octbeta3R
2R	18548419	2R_18548419_SNP [dm3] 2R_22660914_SNP [dm6]	C	A	3.928e^-4	0.967	DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
2R	18548442	2R_18548442_SNP [dm3] 2R_22660937_SNP [dm6]	G	A	3.928e^-4	0.967	UPSTREAM CG42566 DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
3R	26174116	3R_26174116_DEL [dm3] 3R_30348394_DEL [dm6]	CTATGATGGATCCC...	C	3.932e^-4	0.967	INTRON hdc
2R	5735181	2R_5735181_SNP [dm3] 2R_9847676_SNP [dm6]	T	G	3.932e^-4	0.967	UPSTREAM CG1671 INTRON Prosalpha7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	13928601	3L_13928601_SNP [dm3] 3L_13935501_SNP [dm6]	C	G	3.932e^-4	0.967	DOWNSTREAM Gl INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	3.936e^-4	0.967	INTRON ush	regulatory region REDfly_CRMs
3R	5249305	3R_5249305_SNP [dm3] 3R_9423583_SNP [dm6]	C	A	3.938e^-4	0.967	INTRON ps	TF binding site mE1_TFBS_HSA
2R	17000238	2R_17000238_SNP [dm3] 2R_21112733_SNP [dm6]	G	A	3.939e^-4	0.967	INTRON ktub
3R	13655792	3R_13655792_SNP [dm3] 3R_17830070_SNP [dm6]	C	G	3.942e^-4	0.967	INTRON tinc
2L	9488334	2L_9488334_SNP [dm3] 2L_9488334_SNP [dm6]	C	G	3.954e^-4	0.967	INTERGENIC
3R	26038506	3R_26038506_SNP [dm3] 3R_30212784_SNP [dm6]	T	C	3.960e^-4	0.967	UPSTREAM Cec2 DOWNSTREAM CecB & 1 other INTERGENIC
2L	12554597	2L_12554597_SNP [dm3] 2L_12554597_SNP [dm6]	C	G	3.961e^-4	0.967	INTERGENIC
3R	7897878	3R_7897878_SNP [dm3] 3R_12072156_SNP [dm6]	T	C	3.962e^-4	0.967	INTRON CG14741
3R	12565277	3R_12565277_SNP [dm3] 3R_16739555_SNP [dm6]	C	A	3.963e^-4	0.967	INTERGENIC
X	7881691	X_7881691_SNP [dm3] X_7987658_SNP [dm6]	G	C	3.963e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18924352	3L_18924352_SNP [dm3] 3L_18931252_SNP [dm6]	T	C	3.971e^-4	0.967	INTRON CG32204	TF binding site mE1_TFBS_inv
2R	5784104	2R_5784104_SNP [dm3] 2R_9896599_SNP [dm6]	C	T	3.975e^-4	0.967	SYNONYMOUS_CODING CG30007
X	9927887	X_9927887_SNP [dm3] X_10033854_SNP [dm6]	A	G	3.978e^-4	0.967	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
3L	1932576	3L_1932576_SNP [dm3] 3L_1932576_SNP [dm6]	C	T	3.983e^-4	0.967	INTRON Dbx	TF binding site mE1_TFBS_chinmo
3L	10462548	3L_10462548_SNP [dm3] 3L_10469448_SNP [dm6]	C	T	3.987e^-4	0.967	DOWNSTREAM S-Lap3 INTERGENIC
2R	12690187	2R_12690187_SNP [dm3] 2R_16802682_SNP [dm6]	G	A	4.005e^-4	0.968	INTERGENIC
X	9205070	X_9205070_SNP [dm3] X_9311037_SNP [dm6]	T	C	4.007e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14677706	2R_14677706_DEL [dm3] 2R_18790201_DEL [dm6]	ATCGGGATCCGTA...	A	4.011e^-4	0.968	CODON_DELETION CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4822931	3R_4822931_SNP [dm3] 3R_8997209_SNP [dm6]	A	G	4.014e^-4	0.968	UPSTREAM CG11977 INTRON CG31100
3R	9743530	3R_9743530_SNP [dm3] 3R_13917808_SNP [dm6]	G	A	4.015e^-4	0.968	INTERGENIC
2R	17024753	2R_17024753_SNP [dm3] 2R_21137248_SNP [dm6]	C	T	4.032e^-4	0.968	INTRON Magi
X	14043974	X_14043974_INS [dm3] X_14149941_INS [dm6]	T	TATTT	4.045e^-4	0.968	INTERGENIC
3L	18732606	3L_18732606_SNP [dm3] 3L_18739506_SNP [dm6]	T	C	4.059e^-4	0.968	INTERGENIC
3L	8191605	3L_8191605_SNP [dm3] 3L_8198505_SNP [dm6]	A	T	4.071e^-4	0.968	UPSTREAM Ubc12 INTRON CG8005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8371979	2L_8371979_SNP [dm3] 2L_8371979_SNP [dm6]	A	G	4.073e^-4	0.968	UPSTREAM CG17292 INTRON CG17292
2R	15872107	2R_15872107_SNP [dm3] 2R_19984602_SNP [dm6]	G	A	4.077e^-4	0.968	UTR_3_PRIME CG8654
2L	11507978	2L_11507978_SNP [dm3] 2L_11507978_SNP [dm6]	T	C	4.080e^-4	0.968	UTR_3_PRIME spz4 DOWNSTREAM CG6509	TF binding site mE1_TFBS_cad
2R	13901810	2R_13901810_DEL [dm3] 2R_18014305_DEL [dm6]	TTGAAAAGCGTTG...	T	4.080e^-4	0.968	INTERGENIC
2L	13107274	2L_13107274_SNP [dm3] 2L_13107274_SNP [dm6]	C	T	4.090e^-4	0.968	SPLICE_SITE_REGION CG5142 INTRON CG5142	TF binding site mE1_TFBS_chinmo
3R	18320695	3R_18320695_SNP [dm3] 3R_22494973_SNP [dm6]	T	C	4.093e^-4	0.968	INTERGENIC
2R	16561900	2R_16561900_SNP [dm3] 2R_20674395_SNP [dm6]	C	T	4.099e^-4	0.968	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6762182	3R_6762182_SNP [dm3] 3R_10936460_SNP [dm6]	T	A	4.099e^-4	0.968	INTERGENIC
3R	24603594	3R_24603594_SNP [dm3] 3R_28777872_SNP [dm6]	C	T	4.099e^-4	0.968	DOWNSTREAM CR44952 INTERGENIC
2L	15039710	2L_15039710_SNP [dm3] 2L_15039710_SNP [dm6]	G	A	4.100e^-4	0.968	UTR_5_PRIME Su_H_ UPSTREAM CIAPIN1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16780823	3R_16780823_SNP [dm3] 3R_20955101_SNP [dm6]	C	A	4.101e^-4	0.968	INTRON Atpalpha
3L	8191593	3L_8191593_SNP [dm3] 3L_8198493_SNP [dm6]	T	A	4.104e^-4	0.968	UPSTREAM Ubc12 INTRON CG8005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8315123	3L_8315123_SNP [dm3] 3L_8322023_SNP [dm6]	G	A	4.105e^-4	0.968	SYNONYMOUS_CODING CG13670
X	16883382	X_16883382_SNP [dm3] X_16989349_SNP [dm6]	T	C	4.109e^-4	0.968	INTRON CG45002
2L	12603247	2L_12603247_SNP [dm3] 2L_12603247_SNP [dm6]	G	A	4.117e^-4	0.968	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6913074	2R_6913074_SNP [dm3] 2R_11025569_SNP [dm6]	C	T	4.120e^-4	0.968	INTRON luna
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	4.121e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1111312	3L_1111312_INS [dm3] 3L_1111312_INS [dm6]	A	AGCAGAGCAG	4.131e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1946561	3L_1946561_SNP [dm3] 3L_1946561_SNP [dm6]	C	A	4.152e^-4	0.968	SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_sens
X	7996271	X_7996271_SNP [dm3] X_8102238_SNP [dm6]	A	G	4.152e^-4	0.968	UTR_3_PRIME Gclc UPSTREAM CG2258 DOWNSTREAM Gclc
2R	9128370	2R_9128370_SNP [dm3] 2R_13240865_SNP [dm6]	T	C	4.154e^-4	0.968	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24607848	3R_24607848_SNP [dm3] 3R_28782126_SNP [dm6]	A	T	4.156e^-4	0.968	INTERGENIC
X	16809482	X_16809482_SNP [dm3] X_16915449_SNP [dm6]	T	G	4.172e^-4	0.968	INTRON CG4928
2R	14116315	2R_14116315_SNP [dm3] 2R_18228810_SNP [dm6]	C	T	4.183e^-4	0.968	DOWNSTREAM CR45310 EXON CR45311
3R	22753405	3R_22753405_SNP [dm3] 3R_26927683_SNP [dm6]	T	A	4.200e^-4	0.968	INTRON sda
2L	770147	2L_770147_SNP [dm3] 2L_770147_SNP [dm6]	T	G	4.204e^-4	0.968	INTERGENIC
3R	19214550	3R_19214550_SNP [dm3] 3R_23388828_SNP [dm6]	A	G	4.206e^-4	0.968	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14259933	3L_14259933_SNP [dm3] 3L_14266833_SNP [dm6]	C	T	4.213e^-4	0.968	INTERGENIC
2L	1200697	2L_1200697_INS [dm3] 2L_1200697_INS [dm6]	A	AGCGTCCATTA...	4.216e^-4	0.968	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2R	17089902	2R_17089902_SNP [dm3] 2R_21202397_SNP [dm6]	T	C	4.216e^-4	0.968	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9337742	3L_9337742_SNP [dm3] 3L_9344642_SNP [dm6]	C	T	4.224e^-4	0.968	INTRON PGRP-LC
2R	5785084	2R_5785084_SNP [dm3] 2R_9897579_SNP [dm6]	C	A	4.226e^-4	0.968	SYNONYMOUS_CODING CG30007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6960123	3L_6960123_SNP [dm3] 3L_6967023_SNP [dm6]	T	C	4.230e^-4	0.968	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14056166	3L_14056166_SNP [dm3] 3L_14063066_SNP [dm6]	G	A	4.249e^-4	0.968	INTRON CG32138
3R	19214558	3R_19214558_SNP [dm3] 3R_23388836_SNP [dm6]	C	A	4.256e^-4	0.968	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	4.264e^-4	0.968	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
3L	7851688	3L_7851688_SNP [dm3] 3L_7858588_SNP [dm6]	C	G	4.292e^-4	0.968	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15872106	2R_15872106_SNP [dm3] 2R_19984601_SNP [dm6]	A	G	4.305e^-4	0.968	UTR_3_PRIME CG8654
2R	8733262	2R_8733262_SNP [dm3] 2R_12845757_SNP [dm6]	G	A	4.318e^-4	0.968	SYNONYMOUS_CODING CG17575	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	4.321e^-4	0.968	INTRON CG7985
2L	18213809	2L_18213809_SNP [dm3] 2L_18213809_SNP [dm6]	T	A	4.330e^-4	0.968	INTRON CG42750	insulator Insulator_Class_II.mE01
2L	10522734	2L_10522734_INS [dm3] 2L_10522734_INS [dm6]	T	TT	4.334e^-4	0.968	INTERGENIC
2R	11766681	2R_11766681_SNP [dm3] 2R_15879176_SNP [dm6]	G	A	4.338e^-4	0.968	INTRON sli
3R	12727771	3R_12727771_INS [dm3] 3R_16902049_INS [dm6]	C	CAC	4.339e^-4	0.968	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26174152	3R_26174152_DEL [dm3] 3R_30348430_DEL [dm6]	CC	C	4.348e^-4	0.968	INTRON hdc
3L	16988909	3L_16988909_SNP [dm3] 3L_16995809_SNP [dm6]	C	T	4.355e^-4	0.968	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26158019	3R_26158019_SNP [dm3] 3R_30332297_SNP [dm6]	G	T	4.362e^-4	0.968	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	23237697	3R_23237697_SNP [dm3] 3R_27411975_SNP [dm6]	T	C	4.367e^-4	0.968	INTRON side
2R	16908337	2R_16908337_SNP [dm3] 2R_21020832_SNP [dm6]	A	G	4.370e^-4	0.968	INTRON RIC-3
3R	8349986	3R_8349986_SNP [dm3] 3R_12524264_SNP [dm6]	T	C	4.376e^-4	0.968	INTRON Octbeta3R
2R	19122571	2R_19122571_SNP [dm3] 2R_23235048_SNP [dm6]	T	C	4.382e^-4	0.968	INTERGENIC
X	11217958	X_11217958_SNP [dm3] X_11323925_SNP [dm6]	T	C	4.382e^-4	0.968	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	22637027	2L_22637027_DEL [dm3] 2L_22744295_DEL [dm6]	GTGCC	AA	4.383e^-4	0.968	INTRON CG40006
2L	22638668	2L_22638668_DEL [dm3] 2L_22745936_DEL [dm6]	GCACAGAAACGATAAATTAA...	T	4.384e^-4	0.968	INTRON CG40006
2R	16395584	2R_16395584_SNP [dm3] 2R_20508079_SNP [dm6]	C	T	4.386e^-4	0.968	UPSTREAM CR44646 INTERGENIC
2R	17462411	2R_17462411_SNP [dm3] 2R_21574906_SNP [dm6]	T	C	4.392e^-4	0.968	INTRON CG10440
2L	521484	2L_521484_INS [dm3] 2L_521484_INS [dm6]	T	TG	4.395e^-4	0.968	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521499	2L_521499_SNP [dm3] 2L_521499_SNP [dm6]	A	C	4.395e^-4	0.968	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15391537	3L_15391537_SNP [dm3] 3L_15398437_SNP [dm6]	G	C	4.395e^-4	0.968	INTERGENIC
3R	9890861	3R_9890861_SNP [dm3] 3R_14065139_SNP [dm6]	A	G	4.414e^-4	0.968	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18924358	3L_18924358_SNP [dm3] 3L_18931258_SNP [dm6]	A	T	4.418e^-4	0.968	INTRON CG32204	TF binding site mE1_TFBS_inv
2R	13633761	2R_13633761_SNP [dm3] 2R_17746256_SNP [dm6]	A	T	4.436e^-4	0.968	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
3L	11848058	3L_11848058_SNP [dm3] 3L_11854958_SNP [dm6]	T	C	4.453e^-4	0.968	INTRON CG44837	TF binding site mE1_TFBS_cad
2R	8767091	2R_8767091_SNP [dm3] 2R_12879586_SNP [dm6]	C	A	4.459e^-4	0.968	UTR_5_PRIME Nmda1 UPSTREAM Nmda1 & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8767204	2R_8767204_SNP [dm3] 2R_12879699_SNP [dm6]	C	T	4.459e^-4	0.968	UTR_5_PRIME Nmda1 UPSTREAM Nmda1 & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	616590	X_616590_SNP [dm3] X_722557_SNP [dm6]	A	T	4.472e^-4	0.968	INTRON sdk
2R	16076213	2R_16076213_SNP [dm3] 2R_20188708_SNP [dm6]	A	G	4.475e^-4	0.968	INTERGENIC
2R	5741458	2R_5741458_SNP [dm3] 2R_9853953_SNP [dm6]	G	A	4.477e^-4	0.968	INTRON CG1516
3L	3923609	3L_3923609_SNP [dm3] 3L_3923609_SNP [dm6]	A	T	4.483e^-4	0.968	INTRON Eip63F-1
2L	7443058	2L_7443058_SNP [dm3] 2L_7443058_SNP [dm6]	G	T	4.487e^-4	0.968	UPSTREAM CG5973 INTRON CG5973
3R	8209773	3R_8209773_SNP [dm3] 3R_12384051_SNP [dm6]	A	G	4.496e^-4	0.968	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6517142	2L_6517142_SNP [dm3] 2L_6517142_SNP [dm6]	T	C	4.498e^-4	0.968	INTRON CG31637
X	5698584	X_5698584_INS [dm3] X_5804551_INS [dm6]	G	GCTTTTGG	4.509e^-4	0.968	UPSTREAM Cpr5C INTERGENIC
3L	3044617	3L_3044617_SNP [dm3] 3L_3044617_SNP [dm6]	T	A	4.511e^-4	0.968	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site mE1_TFBS_HSA
2R	13932250	2R_13932250_SNP [dm3] 2R_18044745_SNP [dm6]	A	G	4.517e^-4	0.968	SYNONYMOUS_CODING CG5770
3L	16894055	3L_16894055_SNP [dm3] 3L_16900955_SNP [dm6]	G	T	4.520e^-4	0.968	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16325008	3R_16325008_SNP [dm3] 3R_20499286_SNP [dm6]	G	A	4.527e^-4	0.968	DOWNSTREAM Dic2 INTERGENIC
3L	6333247	3L_6333247_SNP [dm3] 3L_6340147_SNP [dm6]	T	C	4.528e^-4	0.968	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2L	15964397	2L_15964397_SNP [dm3] 2L_15964397_SNP [dm6]	G	A	4.544e^-4	0.968	INTERGENIC
3L	15841774	3L_15841774_SNP [dm3] 3L_15848674_SNP [dm6]	T	C	4.545e^-4	0.968	UTR_3_PRIME pHCl	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15031147	2L_15031147_SNP [dm3] 2L_15031147_SNP [dm6]	G	C	4.551e^-4	0.968	INTRON GABA-B-R1 & 1 other
2R	17792534	2R_17792534_DEL [dm3] 2R_21905029_DEL [dm6]	TCAGCCAGT	T	4.554e^-4	0.968	INTRON Fili
X	15032096	X_15032096_SNP [dm3] X_15138063_SNP [dm6]	G	A	4.555e^-4	0.968	UTR_3_PRIME RpL37a DOWNSTREAM drd & 1 other	TF binding site mE1_TFBS_bab1
3L	13395559	3L_13395559_INS [dm3] 3L_13402459_INS [dm6]	T	TGGTTTACTTCGCCAT...	4.561e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18924234	3L_18924234_SNP [dm3] 3L_18931134_SNP [dm6]	T	G	4.561e^-4	0.968	INTRON CG32204
2L	807801	2L_807801_SNP [dm3] 2L_807801_SNP [dm6]	T	C	4.565e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6333756	2R_6333756_SNP [dm3] 2R_10446251_SNP [dm6]	C	T	4.565e^-4	0.968	INTRON Galphao
3R	8209435	3R_8209435_SNP [dm3] 3R_12383713_SNP [dm6]	T	G	4.570e^-4	0.968	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1057479	2L_1057479_SNP [dm3] 2L_1057479_SNP [dm6]	T	A	4.573e^-4	0.968	INTRON S	TF binding site mE1_TFBS_sens
2L	1057480	2L_1057480_SNP [dm3] 2L_1057480_SNP [dm6]	A	T	4.573e^-4	0.968	INTRON S	TF binding site mE1_TFBS_sens
2R	19108357	2R_19108357_SNP [dm3] 2R_23220834_SNP [dm6]	A	T	4.574e^-4	0.968	INTERGENIC
3L	16916454	3L_16916454_SNP [dm3] 3L_16923354_SNP [dm6]	G	T	4.585e^-4	0.968	SYNONYMOUS_CODING CG13028 DOWNSTREAM Lmpt & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18565380	2R_18565380_SNP [dm3] 2R_22677875_SNP [dm6]	T	A	4.592e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6426703	2R_6426703_SNP [dm3] 2R_10539198_SNP [dm6]	G	A	4.598e^-4	0.968	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16353380	2R_16353380_SNP [dm3] 2R_20465875_SNP [dm6]	C	A	4.607e^-4	0.968	INTRON CG12484
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	4.607e^-4	0.968	INTRON Rgk1
2L	521481	2L_521481_SNP [dm3] 2L_521481_SNP [dm6]	A	G	4.620e^-4	0.968	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12657426	3L_12657426_INS [dm3] 3L_12664326_INS [dm6]	A	AT	4.639e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12657428	3L_12657428_SNP [dm3] 3L_12664328_SNP [dm6]	T	A	4.639e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad
2L	521464	2L_521464_DEL [dm3] 2L_521464_DEL [dm6]	GCC	T	4.640e^-4	0.968	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	521545	2L_521545_SNP [dm3] 2L_521545_SNP [dm6]	T	G	4.640e^-4	0.968	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4931812	2L_4931812_SNP [dm3] 2L_4931812_SNP [dm6]	T	C	4.642e^-4	0.968	INTRON hoe1
2R	19632919	2R_19632919_SNP [dm3] 2R_23745396_SNP [dm6]	A	C	4.643e^-4	0.968	UPSTREAM egl INTRON egl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	9476185	X_9476185_SNP [dm3] X_9582152_SNP [dm6]	G	A	4.651e^-4	0.968	UPSTREAM CR45540 INTERGENIC
3L	6379820	3L_6379820_SNP [dm3] 3L_6386720_SNP [dm6]	T	C	4.663e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13870327	2R_13870327_SNP [dm3] 2R_17982822_SNP [dm6]	A	G	4.679e^-4	0.968	INTRON dpr13
3L	2568881	3L_2568881_SNP [dm3] 3L_2568881_SNP [dm6]	T	C	4.689e^-4	0.968	INTRON msn
2R	9583786	2R_9583786_SNP [dm3] 2R_13696281_SNP [dm6]	A	G	4.689e^-4	0.968	INTRON fas
2L	759812	2L_759812_SNP [dm3] 2L_759812_SNP [dm6]	C	T	4.692e^-4	0.968	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3
3R	22253115	3R_22253115_SNP [dm3] 3R_26427393_SNP [dm6]	G	A	4.695e^-4	0.968	INTRON CR31084
2L	11323303	2L_11323303_SNP [dm3] 2L_11323303_SNP [dm6]	T	A	4.696e^-4	0.968	INTERGENIC
2L	17430665	2L_17430665_INS [dm3] 2L_17430665_INS [dm6]	C	CAT	4.699e^-4	0.968	DOWNSTREAM CR44409 INTRON Dif
2L	17430667	2L_17430667_SNP [dm3] 2L_17430667_SNP [dm6]	A	T	4.699e^-4	0.968	DOWNSTREAM CR44409 INTRON Dif
2R	12907886	2R_12907886_SNP [dm3] 2R_17020381_SNP [dm6]	G	A	4.700e^-4	0.968	UPSTREAM CG8963 INTRON Ark	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19558967	2R_19558967_SNP [dm3] 2R_23671444_SNP [dm6]	C	T	4.715e^-4	0.968	INTRON Pde8	TF binding site mE1_TFBS_HSA
3L	15203325	3L_15203325_SNP [dm3] 3L_15210225_SNP [dm6]	T	G	4.723e^-4	0.968	INTERGENIC
2L	8271061	2L_8271061_INS [dm3] 2L_8271061_INS [dm6]	T	TATAT	4.724e^-4	0.968	INTRON Btk29A
3R	25171793	3R_25171793_SNP [dm3] 3R_29346071_SNP [dm6]	C	T	4.725e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14199987	2R_14199987_SNP [dm3] 2R_18312482_SNP [dm6]	G	A	4.728e^-4	0.968	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7784868	2L_7784868_SNP [dm3] 2L_7784868_SNP [dm6]	A	G	4.733e^-4	0.968	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	4.735e^-4	0.968	INTERGENIC
2R	12664432	2R_12664432_SNP [dm3] 2R_16776927_SNP [dm6]	A	G	4.739e^-4	0.968	INTERGENIC
2R	3363483	2R_3363483_SNP [dm3] 2R_7475978_SNP [dm6]	A	C	4.741e^-4	0.968	INTRON Aldh-III
2R	6297497	2R_6297497_SNP [dm3] 2R_10409992_SNP [dm6]	A	T	4.744e^-4	0.968	NON_SYNONYMOUS_CODING CG33476 UPSTREAM CG33477 DOWNSTREAM CG33475 INTRON CG42732
2R	17735831	2R_17735831_SNP [dm3] 2R_21848326_SNP [dm6]	A	G	4.762e^-4	0.968	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11323298	2L_11323298_SNP [dm3] 2L_11323298_SNP [dm6]	G	A	4.772e^-4	0.968	INTERGENIC
2R	6937979	2R_6937979_SNP [dm3] 2R_11050474_SNP [dm6]	C	T	4.782e^-4	0.968	INTRON luna
3L	13132917	3L_13132917_SNP [dm3] 3L_13139817_SNP [dm6]	C	T	4.783e^-4	0.968	INTERGENIC
2R	12820809	2R_12820809_SNP [dm3] 2R_16933304_SNP [dm6]	C	T	4.787e^-4	0.968	INTRON Pkc53E
3R	20766616	3R_20766616_SNP [dm3] 3R_24940894_SNP [dm6]	A	C	4.797e^-4	0.968	NON_SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8202628	3R_8202628_SNP [dm3] 3R_12376906_SNP [dm6]	T	C	4.812e^-4	0.968	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
2L	11788054	2L_11788054_SNP [dm3] 2L_11788054_SNP [dm6]	T	A	4.813e^-4	0.968	UPSTREAM CG14931 INTERGENIC
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	4.824e^-4	0.968	INTRON CG42524
2R	15205290	2R_15205290_SNP [dm3] 2R_19317785_SNP [dm6]	T	C	4.824e^-4	0.968	INTRON Rgk1
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	4.824e^-4	0.968	INTRON CG10444	TF binding site mE1_TFBS_cad
X	9197844	X_9197844_DEL [dm3] X_9303811_DEL [dm6]	AAT	A	4.830e^-4	0.968	DOWNSTREAM lz INTERGENIC
3L	15537121	3L_15537121_SNP [dm3] 3L_15544021_SNP [dm6]	G	T	4.833e^-4	0.968	INTRON CrebA	TF binding site mE1_TFBS_HSA
2L	12308059	2L_12308059_SNP [dm3] 2L_12308059_SNP [dm6]	T	C	4.833e^-4	0.968	INTRON aret
3L	2764009	3L_2764009_SNP [dm3] 3L_2764009_SNP [dm6]	A	G	4.836e^-4	0.968	INTRON Mrtf
3R	21009365	3R_21009365_SNP [dm3] 3R_25183643_SNP [dm6]	T	C	4.840e^-4	0.968	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	14183979	2R_14183979_SNP [dm3] 2R_18296474_SNP [dm6]	G	C	4.841e^-4	0.968	SYNONYMOUS_CODING CG18537 UPSTREAM CG18538 DOWNSTREAM CG18536 INTRON sbb
3R	25289439	3R_25289439_SNP [dm3] 3R_29463717_SNP [dm6]	T	C	4.842e^-4	0.968	INTRON Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13774666	3R_13774666_SNP [dm3] 3R_17948944_SNP [dm6]	A	G	4.849e^-4	0.968	INTRON cpo
3L	2764008	3L_2764008_SNP [dm3] 3L_2764008_SNP [dm6]	G	A	4.849e^-4	0.968	INTRON Mrtf
3R	21477082	3R_21477082_SNP [dm3] 3R_25651360_SNP [dm6]	G	A	4.849e^-4	0.968	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
X	3239629	X_3239629_SNP [dm3] X_3345596_SNP [dm6]	G	C	4.851e^-4	0.968	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13107218	2L_13107218_SNP [dm3] 2L_13107218_SNP [dm6]	G	C	4.851e^-4	0.968	INTRON CG5142
X	571250	X_571250_INS [dm3] X_677217_INS [dm6]	A	AATATATATATTTATATACA...	4.855e^-4	0.968	INTERGENIC
2L	11517271	2L_11517271_SNP [dm3] 2L_11517271_SNP [dm6]	G	A	4.858e^-4	0.968	UPSTREAM CG4970 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
2L	11479621	2L_11479621_SNP [dm3] 2L_11479621_SNP [dm6]	A	T	4.864e^-4	0.968	INTERGENIC
3R	8560960	3R_8560960_SNP [dm3] 3R_12735238_SNP [dm6]	A	T	4.869e^-4	0.968	INTERGENIC
2R	18400513	2R_18400513_SNP [dm3] 2R_22513008_SNP [dm6]	T	G	4.872e^-4	0.968	UTR_5_PRIME px INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16867999	X_16867999_SNP [dm3] X_16973966_SNP [dm6]	G	A	4.873e^-4	0.968	INTRON CG45002	TF binding site mE1_TFBS_chinmo
2L	22640780	2L_22640780_SNP [dm3] 2L_22748048_SNP [dm6]	A	G	4.886e^-4	0.968	INTRON CG40006
2R	14771458	2R_14771458_SNP [dm3] 2R_18883953_SNP [dm6]	C	T	4.887e^-4	0.968	INTRON sano
3R	26184459	3R_26184459_SNP [dm3] 3R_30358737_SNP [dm6]	C	T	4.887e^-4	0.968	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9226573	3L_9226573_SNP [dm3] 3L_9233473_SNP [dm6]	C	T	4.895e^-4	0.968	INTERGENIC
3R	17083451	3R_17083451_SNP [dm3] 3R_21257729_SNP [dm6]	T	G	4.903e^-4	0.968	INTRON ETHR
X	9459789	X_9459789_INS [dm3] X_9565756_INS [dm6]	T	TTAATAATCACTCAAA...	4.909e^-4	0.968	INTRON Cubn
2R	15716437	2R_15716437_SNP [dm3] 2R_19828932_SNP [dm6]	A	G	4.917e^-4	0.968	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22245950	3R_22245950_SNP [dm3] 3R_26420228_SNP [dm6]	C	T	4.919e^-4	0.968	INTERGENIC
2R	8733466	2R_8733466_SNP [dm3] 2R_12845961_SNP [dm6]	A	G	4.929e^-4	0.968	SYNONYMOUS_CODING CG17575 DOWNSTREAM antr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6490269	2L_6490269_SNP [dm3] 2L_6490269_SNP [dm6]	T	C	4.934e^-4	0.968	UPSTREAM CG31638 DOWNSTREAM epsilonCOP INTRON CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13049282	2R_13049282_SNP [dm3] 2R_17161777_SNP [dm6]	G	A	4.945e^-4	0.968	UPSTREAM CG30457 INTERGENIC
3L	5896721	3L_5896721_SNP [dm3] 3L_5903621_SNP [dm6]	T	G	4.949e^-4	0.968	SYNONYMOUS_CODING CG32413 DOWNSTREAM CG10486
3R	10430349	3R_10430349_INS [dm3] 3R_14604627_INS [dm6]	A	AA	4.950e^-4	0.968	INTRON stumps	TF binding site mE1_TFBS_cad
2L	15031172	2L_15031172_SNP [dm3] 2L_15031172_SNP [dm6]	T	A	4.954e^-4	0.968	SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
X	9446772	X_9446772_SNP [dm3] X_9552739_SNP [dm6]	G	A	4.961e^-4	0.968	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12315782	3L_12315782_SNP [dm3] 3L_12322682_SNP [dm6]	C	T	4.962e^-4	0.968	INTERGENIC
2L	2843540	2L_2843540_SNP [dm3] 2L_2843540_SNP [dm6]	C	T	4.967e^-4	0.968	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3L	7300319	3L_7300319_SNP [dm3] 3L_7307219_SNP [dm6]	C	T	4.979e^-4	0.968	INTRON unc-13-4A
3R	8372946	3R_8372946_SNP [dm3] 3R_12547224_SNP [dm6]	G	C	4.980e^-4	0.968	INTRON Octbeta3R
3R	12447432	3R_12447432_DEL [dm3] 3R_16621710_DEL [dm6]	AT	A	4.980e^-4	0.968	INTRON CG14893	TF binding site mE1_TFBS_sens
3R	20491103	3R_20491103_SNP [dm3] 3R_24665381_SNP [dm6]	A	C	4.983e^-4	0.968	UTR_5_PRIME slo INTRON slo	regulatory region REDfly_CRMs
3R	20727551	3R_20727551_SNP [dm3] 3R_24901829_SNP [dm6]	C	T	4.987e^-4	0.968	SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18072350	2R_18072350_SNP [dm3] 2R_22184845_SNP [dm6]	C	T	4.993e^-4	0.968	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1200663	2L_1200663_SNP [dm3] 2L_1200663_SNP [dm6]	T	C	4.998e^-4	0.968	UTR_3_PRIME CG43349 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
X	11217956	X_11217956_INS [dm3] X_11323923_INS [dm6]	T	TC	5.005e^-4	0.968	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	5.011e^-4	0.968	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	18950964	2L_18950964_SNP [dm3] 2L_18950964_SNP [dm6]	G	A	5.043e^-4	0.968	UTR_3_PRIME CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16665856	2R_16665856_SNP [dm3] 2R_20778351_SNP [dm6]	T	C	5.044e^-4	0.968	SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
2L	13240607	2L_13240607_SNP [dm3] 2L_13240607_SNP [dm6]	G	T	5.048e^-4	0.968	SYNONYMOUS_CODING CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4023165	2L_4023165_SNP [dm3] 2L_4023165_SNP [dm6]	T	C	5.049e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15733303	2L_15733303_SNP [dm3] 2L_15733303_SNP [dm6]	C	A	5.049e^-4	0.968	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3119774	3L_3119774_SNP [dm3] 3L_3119774_SNP [dm6]	C	G	5.053e^-4	0.968	INTRON prominin-like
X	10889272	X_10889272_SNP [dm3] X_10995239_SNP [dm6]	A	T	5.066e^-4	0.968	INTRON CG42339
2R	15205344	2R_15205344_SNP [dm3] 2R_19317839_SNP [dm6]	G	C	5.068e^-4	0.968	INTRON Rgk1
X	14043978	X_14043978_INS [dm3] X_14149945_INS [dm6]	C	CA	5.068e^-4	0.968	INTERGENIC
3L	12050048	3L_12050048_SNP [dm3] 3L_12056948_SNP [dm6]	A	T	5.074e^-4	0.968	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7851754	3L_7851754_SNP [dm3] 3L_7858654_SNP [dm6]	A	G	5.075e^-4	0.968	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3R	17080427	3R_17080427_SNP [dm3] 3R_21254705_SNP [dm6]	G	T	5.079e^-4	0.968	INTRON ETHR
2R	17428877	2R_17428877_SNP [dm3] 2R_21541372_SNP [dm6]	T	G	5.083e^-4	0.968	UPSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	5021257	2R_5021257_SNP [dm3] 2R_9133752_SNP [dm6]	C	T	5.088e^-4	0.968	SYNONYMOUS_CODING Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11829565	3L_11829565_SNP [dm3] 3L_11836465_SNP [dm6]	C	T	5.090e^-4	0.968	NON_SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_sens
3L	3577198	3L_3577198_SNP [dm3] 3L_3577198_SNP [dm6]	G	C	5.103e^-4	0.968	INTRON Eip63E
2L	2546125	2L_2546125_SNP [dm3] 2L_2546125_SNP [dm6]	C	G	5.113e^-4	0.968	INTERGENIC
2R	19607726	2R_19607726_SNP [dm3] 2R_23720203_SNP [dm6]	C	G	5.123e^-4	0.968	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
2R	13366939	2R_13366939_SNP [dm3] 2R_17479434_SNP [dm6]	A	G	5.126e^-4	0.968	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3041181	2R_3041181_SNP [dm3] 2R_7153676_SNP [dm6]	T	C	5.139e^-4	0.968	UPSTREAM Spn43Ab DOWNSTREAM Spn43Ad INTRON pk
2L	1200707	2L_1200707_SNP [dm3] 2L_1200707_SNP [dm6]	C	G	5.147e^-4	0.968	UTR_5_PRIME CG5011 UPSTREAM CG5011 DOWNSTREAM CG43348 & 1 other
2L	3195187	2L_3195187_SNP [dm3] 2L_3195187_SNP [dm6]	A	T	5.148e^-4	0.968	INTRON CG34393
3R	9695395	3R_9695395_SNP [dm3] 3R_13869673_SNP [dm6]	T	C	5.151e^-4	0.968	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22631818	2L_22631818_SNP [dm3] 2L_22739086_SNP [dm6]	T	C	5.153e^-4	0.968	INTRON CG40006
2R	15397459	2R_15397459_SNP [dm3] 2R_19509954_SNP [dm6]	T	C	5.154e^-4	0.968	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2L	2572627	2L_2572627_SNP [dm3] 2L_2572627_SNP [dm6]	C	T	5.158e^-4	0.968	SYNONYMOUS_CODING Cyp309a2 DOWNSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	1642192	2R_1642192_SNP [dm3] 2R_5754687_SNP [dm6]	T	A	5.166e^-4	0.968	SYNONYMOUS_CODING l_2_09851	TF binding site mE1_TFBS_cad
3R	16750173	3R_16750173_SNP [dm3] 3R_20924451_SNP [dm6]	G	T	5.176e^-4	0.968	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5063462	3L_5063462_SNP [dm3] 3L_5063462_SNP [dm6]	C	A	5.188e^-4	0.968	INTRON Con
X	14166752	X_14166752_SNP [dm3] X_14272719_SNP [dm6]	G	A	5.189e^-4	0.968	SYNONYMOUS_CODING na
2L	8761726	2L_8761726_SNP [dm3] 2L_8761726_SNP [dm6]	C	G	5.191e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	3340873	2R_3340873_SNP [dm3] 2R_7453368_SNP [dm6]	T	A	5.193e^-4	0.968	INTERGENIC
3R	21199905	3R_21199905_SNP [dm3] 3R_25374183_SNP [dm6]	G	C	5.193e^-4	0.968	INTRON Fur1
3R	9163891	3R_9163891_DEL [dm3] 3R_13338169_DEL [dm6]	TATTATAAAAT...	T	5.198e^-4	0.968	UPSTREAM PK2-R1 INTERGENIC
2R	19625964	2R_19625964_SNP [dm3] 2R_23738441_SNP [dm6]	T	G	5.202e^-4	0.968	INTRON egl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10462430	3L_10462430_SNP [dm3] 3L_10469330_SNP [dm6]	T	A	5.209e^-4	0.968	DOWNSTREAM S-Lap3 INTERGENIC
2L	1762862	2L_1762862_SNP [dm3] 2L_1762862_SNP [dm6]	T	G	5.213e^-4	0.968	INTERGENIC
2L	9142434	2L_9142434_SNP [dm3] 2L_9142434_SNP [dm6]	A	C	5.232e^-4	0.968	INTRON CG32982
3L	15249557	3L_15249557_SNP [dm3] 3L_15256457_SNP [dm6]	C	A	5.268e^-4	0.968	INTERGENIC

By genomic position
Variant impact
Gene name

Cuticul_n_C21 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results