DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.916e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07606
In_3R_P	0.09446
In_3R_K	0.00105

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.1775	0.0751
In_3R_K	13.5535	0.0011

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2765 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	2.608e^-9	0.005	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8221792	3R_8221792_SNP [dm3] 3R_12396070_SNP [dm6]	T	G	6.780e^-9	0.006	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.823e^-8	0.011	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	2.379e^-8	0.011	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	2.745e^-7	0.09	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	2.893e^-7	0.09	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	14503318	3R_14503318_SNP [dm3] 3R_18677596_SNP [dm6]	G	C	3.841e^-7	0.103	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8165817	3R_8165817_SNP [dm3] 3R_12340095_SNP [dm6]	G	A	7.226e^-7	0.134	DOWNSTREAM CR44941 INTERGENIC
3R	17213783	3R_17213783_SNP [dm3] 3R_21388061_SNP [dm6]	G	A	7.508e^-7	0.134	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	7.680e^-7	0.134	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	528292	2L_528292_SNP [dm3] 2L_528292_SNP [dm6]	C	G	7.870e^-7	0.134	INTRON ush	regulatory region REDfly_CRMs
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.049e^-6	0.164	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	17213941	3R_17213941_SNP [dm3] 3R_21388219_SNP [dm6]	T	A	1.348e^-6	0.194	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17214297	3R_17214297_SNP [dm3] 3R_21388575_SNP [dm6]	G	T	2.081e^-6	0.251	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	2.125e^-6	0.251	INTRON timeout & 2 others
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	2.138e^-6	0.251	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	2.611e^-6	0.262	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	2.779e^-6	0.262	DOWNSTREAM CG18109 INTERGENIC
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	2.836e^-6	0.262	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	2.952e^-6	0.262	INTRON timeout & 2 others
X	18170429	X_18170429_SNP [dm3] X_18276396_SNP [dm6]	C	T	3.035e^-6	0.262	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8605234	3R_8605234_SNP [dm3] 3R_12779512_SNP [dm6]	A	T	3.113e^-6	0.262	INTRON beat-Vc
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	3.247e^-6	0.262	INTERGENIC
3R	8358059	3R_8358059_SNP [dm3] 3R_12532337_SNP [dm6]	C	T	3.391e^-6	0.262	INTRON Octbeta3R
3L	5361684	3L_5361684_INS [dm3] 3L_5368584_INS [dm6]	T	TG	3.561e^-6	0.262	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8560942	3R_8560942_MNP [dm3] 3R_12735220_MNP [dm6]	AAG	TTT	4.088e^-6	0.262	INTERGENIC
3R	22703755	3R_22703755_SNP [dm3] 3R_26878033_SNP [dm6]	C	T	4.137e^-6	0.262	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	4.342e^-6	0.262	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	4.497e^-6	0.262	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	4.620e^-6	0.262	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	4.699e^-6	0.262	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	4.865e^-6	0.262	INTRON CG18769
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	4.906e^-6	0.262	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	4.906e^-6	0.262	INTRON timeout & 2 others
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	4.961e^-6	0.262	INTERGENIC
2L	528267	2L_528267_SNP [dm3] 2L_528267_SNP [dm6]	T	A	5.200e^-6	0.262	INTRON ush	regulatory region REDfly_CRMs
2L	496826	2L_496826_SNP [dm3] 2L_496826_SNP [dm6]	G	C	5.373e^-6	0.262	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5361634	3L_5361634_SNP [dm3] 3L_5368534_SNP [dm6]	T	C	5.548e^-6	0.262	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	5.762e^-6	0.262	INTERGENIC
3L	11450272	3L_11450272_SNP [dm3] 3L_11457172_SNP [dm6]	G	A	6.187e^-6	0.262	NON_SYNONYMOUS_CODING CG12289
2L	5812993	2L_5812993_SNP [dm3] 2L_5812993_SNP [dm6]	A	C	6.196e^-6	0.262	INTERGENIC
3R	8771965	3R_8771965_SNP [dm3] 3R_12946243_SNP [dm6]	C	A	6.246e^-6	0.262	INTERGENIC
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	6.369e^-6	0.262	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6546240	3R_6546240_SNP [dm3] 3R_10720518_SNP [dm6]	T	C	6.463e^-6	0.262	INTERGENIC
3R	8994436	3R_8994436_SNP [dm3] 3R_13168714_SNP [dm6]	G	A	6.647e^-6	0.262	INTERGENIC
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	6.935e^-6	0.262	INTERGENIC
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	7.032e^-6	0.262	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14506517	3R_14506517_SNP [dm3] 3R_18680795_SNP [dm6]	T	A	7.247e^-6	0.262	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
3R	17213975	3R_17213975_SNP [dm3] 3R_21388253_SNP [dm6]	T	A	7.301e^-6	0.262	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	7.402e^-6	0.262	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8409502	3R_8409502_SNP [dm3] 3R_12583780_SNP [dm6]	G	A	7.416e^-6	0.262	INTRON Octbeta2R
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	7.586e^-6	0.262	INTERGENIC
3R	8560966	3R_8560966_SNP [dm3] 3R_12735244_SNP [dm6]	A	T	7.609e^-6	0.262	INTERGENIC
3R	14503317	3R_14503317_SNP [dm3] 3R_18677595_SNP [dm6]	G	T	7.635e^-6	0.262	UPSTREAM CG7706 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	7.908e^-6	0.262	INTERGENIC
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	8.057e^-6	0.262	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	528185	2L_528185_SNP [dm3] 2L_528185_SNP [dm6]	G	A	8.293e^-6	0.262	INTRON ush	regulatory region REDfly_CRMs
3L	9870489	3L_9870489_SNP [dm3] 3L_9877389_SNP [dm6]	G	C	8.358e^-6	0.262	DOWNSTREAM CR45406 INTERGENIC
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	8.514e^-6	0.262	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3L	11450266	3L_11450266_SNP [dm3] 3L_11457166_SNP [dm6]	A	G	8.624e^-6	0.262	NON_SYNONYMOUS_CODING CG12289
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	8.679e^-6	0.262	INTERGENIC
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	8.826e^-6	0.262	INTRON timeout & 2 others
3R	8444815	3R_8444815_SNP [dm3] 3R_12619093_SNP [dm6]	A	G	8.851e^-6	0.262	EXON CR44942	TF binding site BDTNP1_TFBS_twi
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	9.181e^-6	0.262	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	9.182e^-6	0.262	INTRON timeout & 2 others
3R	8511699	3R_8511699_SNP [dm3] 3R_12685977_SNP [dm6]	A	T	9.236e^-6	0.262	INTRON kar	TF binding site mE1_TFBS_cad
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	9.402e^-6	0.263	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9870418	3L_9870418_SNP [dm3] 3L_9877318_SNP [dm6]	A	G	9.666e^-6	0.264	DOWNSTREAM CR45406 INTERGENIC
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	9.717e^-6	0.264	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11450270	3L_11450270_SNP [dm3] 3L_11457170_SNP [dm6]	G	C	1.023e^-5	0.274	NON_SYNONYMOUS_CODING CG12289
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.037e^-5	0.274	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6279074	3L_6279074_SNP [dm3] 3L_6285974_SNP [dm6]	G	A	1.089e^-5	0.284	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	1.112e^-5	0.285	UPSTREAM hoe1 INTRON hoe1
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	1.125e^-5	0.285	INTERGENIC
3R	10504684	3R_10504684_SNP [dm3] 3R_14678962_SNP [dm6]	G	C	1.146e^-5	0.287	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12325612	3R_12325612_SNP [dm3] 3R_16499890_SNP [dm6]	T	G	1.164e^-5	0.287	SYNONYMOUS_CODING decay UPSTREAM Gr89a
3R	8977070	3R_8977070_DEL [dm3] 3R_13151348_DEL [dm6]	AGACA	A	1.234e^-5	0.299	INTRON timeout & 2 others
3L	4109655	3L_4109655_SNP [dm3] 3L_4109655_SNP [dm6]	G	T	1.245e^-5	0.299	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13328042	3R_13328042_SNP [dm3] 3R_17502320_SNP [dm6]	T	G	1.273e^-5	0.302	INTRON Dscam3
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	1.352e^-5	0.314	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5685823	X_5685823_SNP [dm3] X_5791790_SNP [dm6]	C	T	1.367e^-5	0.314	UPSTREAM CG12239 & 1 other DOWNSTREAM mir-4963 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25801748	3R_25801748_SNP [dm3] 3R_29976026_SNP [dm6]	T	A	1.396e^-5	0.314	INTERGENIC
3L	7389364	3L_7389364_SNP [dm3] 3L_7396264_SNP [dm6]	G	T	1.396e^-5	0.314	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19044403	2R_19044403_SNP [dm3] 2R_23156880_SNP [dm6]	C	T	1.405e^-5	0.314	DOWNSTREAM CG13545 INTRON CG9899
2R	16381548	2R_16381548_SNP [dm3] 2R_20494043_SNP [dm6]	C	T	1.437e^-5	0.317	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8560964	3R_8560964_SNP [dm3] 3R_12735242_SNP [dm6]	C	T	1.506e^-5	0.328	INTERGENIC
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	1.523e^-5	0.328	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7774982	3R_7774982_SNP [dm3] 3R_11949260_SNP [dm6]	T	G	1.557e^-5	0.33	UPSTREAM CG31211 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	1.589e^-5	0.33	INTRON CG18769
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	1.594e^-5	0.33	INTERGENIC
3L	5361651	3L_5361651_SNP [dm3] 3L_5368551_SNP [dm6]	T	C	1.603e^-5	0.33	UPSTREAM CG10635 & 1 other INTERGENIC
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	1.712e^-5	0.345	INTRON timeout & 2 others
2L	15400980	2L_15400980_SNP [dm3] 2L_15400980_SNP [dm6]	A	G	1.716e^-5	0.345	UPSTREAM CR45374 INTERGENIC
3R	8560960	3R_8560960_SNP [dm3] 3R_12735238_SNP [dm6]	A	T	1.731e^-5	0.345	INTERGENIC
2L	13108885	2L_13108885_SNP [dm3] 2L_13108885_SNP [dm6]	T	G	1.818e^-5	0.359	INTRON CG5142
3R	11719656	3R_11719656_INS [dm3] 3R_15893934_INS [dm6]	C	CC	1.856e^-5	0.362	INTRON CG14877
3L	11450245	3L_11450245_SNP [dm3] 3L_11457145_SNP [dm6]	T	C	1.898e^-5	0.362	UTR_3_PRIME CG12289
3R	6545546	3R_6545546_SNP [dm3] 3R_10719824_SNP [dm6]	G	T	1.900e^-5	0.362	INTERGENIC
3R	8771941	3R_8771941_SNP [dm3] 3R_12946219_SNP [dm6]	G	A	1.944e^-5	0.362	INTERGENIC
3R	8394727	3R_8394727_SNP [dm3] 3R_12569005_SNP [dm6]	C	T	1.968e^-5	0.362	INTRON Octbeta2R

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.066e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.085588
In_3R_K	0.001156

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6985	0.0954
In_3R_K	16.6831	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1877 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8220292	3R_8220292_SNP [dm3] 3R_12394570_SNP [dm6]	T	C	1.745e^-10	3.272e^-4	SYNONYMOUS_CODING CG10097 START_GAINED CG10096 UTR_5_PRIME CG10096 INTRON CG34402
3R	8220563	3R_8220563_SNP [dm3] 3R_12394841_SNP [dm6]	A	G	1.069e^-9	0.001	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 INTRON CG34402
3R	8214104	3R_8214104_SNP [dm3] 3R_12388382_SNP [dm6]	G	A	1.236e^-8	0.007	SYNONYMOUS_CODING CG33098 UTR_3_PRIME CG33098 UPSTREAM CG34402 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	8221499	3R_8221499_SNP [dm3] 3R_12395777_SNP [dm6]	G	A	1.418e^-8	0.007	SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
2L	15790236	2L_15790236_DEL [dm3] 2L_15790236_DEL [dm6]	TTAATCTCTTTCAGTGGCAG...	T	6.190e^-8	0.023	DOWNSTREAM CG18109 INTERGENIC
3R	8221349	3R_8221349_SNP [dm3] 3R_12395627_SNP [dm6]	A	G	9.725e^-8	0.03	DOWNSTREAM Cyp9f3Psi INTRON CG34402 & 2 others
3R	8221282	3R_8221282_SNP [dm3] 3R_12395560_SNP [dm6]	A	C	1.371e^-7	0.037	NON_SYNONYMOUS_CODING CG10097 UTR_5_PRIME CG10096 DOWNSTREAM Cyp9f3Psi INTRON CG34402
3R	8235861	3R_8235861_SNP [dm3] 3R_12410139_SNP [dm6]	T	A	1.860e^-7	0.044	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8215726	3R_8215726_SNP [dm3] 3R_12390004_SNP [dm6]	T	C	5.578e^-7	0.096	SYNONYMOUS_CODING CG34402 DOWNSTREAM CG10096 & 1 other
3R	8235953	3R_8235953_SNP [dm3] 3R_12410231_SNP [dm6]	A	G	5.741e^-7	0.096	INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8219408	3R_8219408_SNP [dm3] 3R_12393686_SNP [dm6]	G	A	5.776e^-7	0.096	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402
3R	8235851	3R_8235851_SNP [dm3] 3R_12410129_SNP [dm6]	A	G	6.170e^-7	0.096	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8242073	3R_8242073_SNP [dm3] 3R_12416351_SNP [dm6]	C	A	7.391e^-7	0.107	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24848600	3R_24848600_SNP [dm3] 3R_29022878_SNP [dm6]	T	G	9.389e^-7	0.116	UPSTREAM CR44264 EXON CR45567
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	9.593e^-7	0.116	INTERGENIC
3R	8237029	3R_8237029_SNP [dm3] 3R_12411307_SNP [dm6]	T	C	1.032e^-6	0.116	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24848601	3R_24848601_SNP [dm3] 3R_29022879_SNP [dm6]	T	G	1.082e^-6	0.116	UPSTREAM CR44264 EXON CR45567
2L	581350	2L_581350_SNP [dm3] 2L_581350_SNP [dm6]	C	A	1.144e^-6	0.116	INTERGENIC
3R	8236552	3R_8236552_SNP [dm3] 3R_12410830_SNP [dm6]	T	C	1.206e^-6	0.116	SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2087403	2L_2087403_SNP [dm3] 2L_2087403_SNP [dm6]	A	T	1.263e^-6	0.116	INTRON dpr3
3R	8224915	3R_8224915_SNP [dm3] 3R_12399193_SNP [dm6]	A	T	1.309e^-6	0.116	SYNONYMOUS_CODING lig3 UPSTREAM Cyp9f3Psi INTRON CG34402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8235744	3R_8235744_SNP [dm3] 3R_12410022_SNP [dm6]	C	A	1.402e^-6	0.116	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8236387	3R_8236387_SNP [dm3] 3R_12410665_SNP [dm6]	G	A	1.419e^-6	0.116	SYNONYMOUS_CODING CG5196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	1.667e^-6	0.118	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	1.667e^-6	0.118	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8235993	3R_8235993_SNP [dm3] 3R_12410271_SNP [dm6]	T	G	1.676e^-6	0.118	SPLICE_SITE_REGION CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8234140	3R_8234140_SNP [dm3] 3R_12408418_SNP [dm6]	C	G	1.714e^-6	0.118	NON_SYNONYMOUS_CODING CG5196 UPSTREAM CG5196 DOWNSTREAM CG5167	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	528468	2L_528468_SNP [dm3] 2L_528468_SNP [dm6]	G	C	1.765e^-6	0.118	INTRON ush	regulatory region REDfly_CRMs
3R	26174403	3R_26174403_SNP [dm3] 3R_30348681_SNP [dm6]	T	G	1.838e^-6	0.119	INTRON hdc
2L	2087400	2L_2087400_SNP [dm3] 2L_2087400_SNP [dm6]	T	A	2.154e^-6	0.135	INTRON dpr3
3R	8233837	3R_8233837_INS [dm3] 3R_12408115_INS [dm6]	T	TGT	2.236e^-6	0.135	UPSTREAM CG5196 DOWNSTREAM CG5167 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	8234276	3R_8234276_SNP [dm3] 3R_12408554_SNP [dm6]	C	G	2.755e^-6	0.161	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	3.061e^-6	0.174	INTERGENIC
3R	23979214	3R_23979214_SNP [dm3] 3R_28153492_SNP [dm6]	C	T	3.412e^-6	0.188	INTRON CG34354
3R	8235840	3R_8235840_SNP [dm3] 3R_12410118_SNP [dm6]	T	C	3.537e^-6	0.19	INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8561159	3R_8561159_INS [dm3] 3R_12735437_INS [dm6]	A	ACGAGGATTAA...	3.908e^-6	0.203	INTERGENIC
2L	2087437	2L_2087437_SNP [dm3] 2L_2087437_SNP [dm6]	G	A	4.030e^-6	0.203	INTRON dpr3
2L	528469	2L_528469_SNP [dm3] 2L_528469_SNP [dm6]	G	T	4.106e^-6	0.203	INTRON ush	regulatory region REDfly_CRMs
3R	8231349	3R_8231349_SNP [dm3] 3R_12405627_SNP [dm6]	T	C	4.411e^-6	0.212	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2087424	2L_2087424_SNP [dm3] 2L_2087424_SNP [dm6]	T	A	4.597e^-6	0.216	INTRON dpr3
2R	3346329	2R_3346329_SNP [dm3] 2R_7458824_SNP [dm6]	A	G	4.932e^-6	0.223	UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8243520	3R_8243520_SNP [dm3] 3R_12417798_SNP [dm6]	C	T	5.118e^-6	0.223	SYNONYMOUS_CODING pps
2R	1699590	2R_1699590_SNP [dm3] 2R_5812085_SNP [dm6]	G	A	5.138e^-6	0.223	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12452771	3R_12452771_INS [dm3] 3R_16627049_INS [dm6]	C	CAGATGGCTTAGGCAC...	5.225e^-6	0.223	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3346327	2R_3346327_SNP [dm3] 2R_7458822_SNP [dm6]	A	G	5.629e^-6	0.233	START_GAINED Inos UTR_5_PRIME Inos DOWNSTREAM CG11141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3345274	2R_3345274_SNP [dm3] 2R_7457769_SNP [dm6]	T	C	5.706e^-6	0.233	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8735914	2R_8735914_SNP [dm3] 2R_12848409_SNP [dm6]	C	A	6.422e^-6	0.247	SYNONYMOUS_CODING CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2R	8736471	2R_8736471_SNP [dm3] 2R_12848966_SNP [dm6]	C	G	6.513e^-6	0.247	UTR_5_PRIME CG30486 UPSTREAM antr DOWNSTREAM CG17574 EXON CR45468
2L	2087442	2L_2087442_SNP [dm3] 2L_2087442_SNP [dm6]	T	G	6.535e^-6	0.247	INTRON dpr3
2L	2087373	2L_2087373_SNP [dm3] 2L_2087373_SNP [dm6]	A	G	6.582e^-6	0.247	INTRON dpr3
3R	8213561	3R_8213561_SNP [dm3] 3R_12387839_SNP [dm6]	C	A	6.846e^-6	0.252	SYNONYMOUS_CODING CG33098 UTR_5_PRIME CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
2R	19108117	2R_19108117_SNP [dm3] 2R_23220594_SNP [dm6]	G	A	7.627e^-6	0.267	INTERGENIC
3R	23237682	3R_23237682_SNP [dm3] 3R_27411960_SNP [dm6]	T	C	7.647e^-6	0.267	INTRON side
2L	2087422	2L_2087422_SNP [dm3] 2L_2087422_SNP [dm6]	A	T	7.688e^-6	0.267	INTRON dpr3
3R	8210917	3R_8210917_SNP [dm3] 3R_12385195_SNP [dm6]	T	G	8.592e^-6	0.293	INTRON GstD11
3R	8215997	3R_8215997_SNP [dm3] 3R_12390275_SNP [dm6]	C	T	9.285e^-6	0.311	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2R	3347756	2R_3347756_SNP [dm3] 2R_7460251_SNP [dm6]	G	A	1.052e^-5	0.345	UTR_3_PRIME CG11141 DOWNSTREAM CG11141
2L	7512982	2L_7512982_SNP [dm3] 2L_7512982_SNP [dm6]	C	T	1.070e^-5	0.345	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8234219	3R_8234219_SNP [dm3] 3R_12408497_SNP [dm6]	A	T	1.086e^-5	0.345	UPSTREAM CG5196 DOWNSTREAM CG5167 INTRON CG5196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	8237112	3R_8237112_SNP [dm3] 3R_12411390_SNP [dm6]	C	A	1.112e^-5	0.348	NON_SYNONYMOUS_CODING CG5196 DOWNSTREAM Dip-C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6406961	2R_6406961_SNP [dm3] 2R_10519456_SNP [dm6]	C	T	1.286e^-5	0.395	DOWNSTREAM lola INTRON lola
3R	8560530	3R_8560530_SNP [dm3] 3R_12734808_SNP [dm6]	A	G	1.383e^-5	0.419	INTERGENIC
3R	8202519	3R_8202519_SNP [dm3] 3R_12376797_SNP [dm6]	A	T	1.427e^-5	0.425	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3L	10516565	3L_10516565_SNP [dm3] 3L_10523465_SNP [dm6]	C	A	1.458e^-5	0.426	INTRON A2bp1
3R	8213528	3R_8213528_SNP [dm3] 3R_12387806_SNP [dm6]	T	C	1.476e^-5	0.426	SYNONYMOUS_CODING CG33098 UPSTREAM CG33098 INTRON CG34402	TF binding site mE1_TFBS_cad
3R	8216558	3R_8216558_SNP [dm3] 3R_12390836_SNP [dm6]	C	T	1.590e^-5	0.445	UTR_3_PRIME CG10096 & 1 other INTRON CG34402
2L	6490368	2L_6490368_SNP [dm3] 2L_6490368_SNP [dm6]	G	A	1.594e^-5	0.445	SYNONYMOUS_CODING CG9548 UPSTREAM CG31638 DOWNSTREAM epsilonCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16803137	X_16803137_SNP [dm3] X_16909104_SNP [dm6]	T	C	1.617e^-5	0.445	INTRON CR44754
2R	3345019	2R_3345019_SNP [dm3] 2R_7457514_SNP [dm6]	T	G	1.636e^-5	0.445	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7512984	2L_7512984_SNP [dm3] 2L_7512984_SNP [dm6]	C	T	1.686e^-5	0.446	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18473897	3L_18473897_DEL [dm3] 3L_18480797_DEL [dm6]	AGA	A	1.687e^-5	0.446	INTERGENIC
2R	8736836	2R_8736836_SNP [dm3] 2R_12849331_SNP [dm6]	C	A	1.744e^-5	0.454	UPSTREAM CG30486 DOWNSTREAM CG17574 & 1 other INTERGENIC
3L	13393927	3L_13393927_SNP [dm3] 3L_13400827_SNP [dm6]	C	A	1.792e^-5	0.46	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	1.903e^-5	0.482	INTERGENIC
2L	7511109	2L_7511109_SNP [dm3] 2L_7511109_SNP [dm6]	G	A	1.932e^-5	0.483	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6060070	3L_6060070_SNP [dm3] 3L_6066970_SNP [dm6]	C	T	2.014e^-5	0.497	INTRON CG42269
3R	22325020	3R_22325020_SNP [dm3] 3R_26499298_SNP [dm6]	A	G	2.042e^-5	0.497	INTRON plum	TF binding site BDTNP1_TFBS_twi
2R	12172662	2R_12172662_SNP [dm3] 2R_16285157_SNP [dm6]	C	G	2.071e^-5	0.498	SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728	TF binding site mE1_TFBS_sens
3R	13790848	3R_13790848_SNP [dm3] 3R_17965126_SNP [dm6]	A	G	2.102e^-5	0.499	INTRON cpo
3L	6098363	3L_6098363_SNP [dm3] 3L_6105263_SNP [dm6]	T	A	2.134e^-5	0.499	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2764038	3L_2764038_SNP [dm3] 3L_2764038_SNP [dm6]	G	C	2.177e^-5	0.499	INTRON Mrtf
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	2.180e^-5	0.499	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6098371	3L_6098371_SNP [dm3] 3L_6105271_SNP [dm6]	T	G	2.214e^-5	0.5	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6098370	3L_6098370_SNP [dm3] 3L_6105270_SNP [dm6]	A	T	2.308e^-5	0.515	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16128695	2R_16128695_SNP [dm3] 2R_20241190_SNP [dm6]	T	C	2.366e^-5	0.521	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2R	3349315	2R_3349315_SNP [dm3] 2R_7461810_SNP [dm6]	A	G	2.413e^-5	0.521	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
2R	17024763	2R_17024763_SNP [dm3] 2R_21137258_SNP [dm6]	T	A	2.416e^-5	0.521	INTRON Magi
2L	18815170	2L_18815170_SNP [dm3] 2L_18815170_SNP [dm6]	C	G	2.463e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11780195	3L_11780195_SNP [dm3] 3L_11787095_SNP [dm6]	C	T	2.479e^-5	0.522	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad
3R	8234936	3R_8234936_SNP [dm3] 3R_12409214_SNP [dm6]	A	G	2.601e^-5	0.542	UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22275373	3R_22275373_SNP [dm3] 3R_26449651_SNP [dm6]	A	T	2.660e^-5	0.548	SYNONYMOUS_CODING Hex-t1 DOWNSTREAM tx	TF binding site mE1_TFBS_sens
2R	5004784	2R_5004784_SNP [dm3] 2R_9117279_SNP [dm6]	C	T	2.716e^-5	0.551	SYNONYMOUS_CODING Su_var_2-10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25079056	3R_25079056_SNP [dm3] 3R_29253334_SNP [dm6]	G	A	2.731e^-5	0.551	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	6520727	X_6520727_SNP [dm3] X_6626694_SNP [dm6]	T	A	2.772e^-5	0.553	INTRON pigs
X	13494833	X_13494833_SNP [dm3] X_13600800_SNP [dm6]	G	A	2.837e^-5	0.56	INTRON up
2R	6036195	2R_6036195_SNP [dm3] 2R_10148690_SNP [dm6]	C	T	2.871e^-5	0.561	NON_SYNONYMOUS_CODING KCNQ INTRON KCNQ
X	14062590	X_14062590_SNP [dm3] X_14168557_SNP [dm6]	T	A	2.926e^-5	0.563	INTERGENIC
X	14062596	X_14062596_SNP [dm3] X_14168563_SNP [dm6]	T	A	2.943e^-5	0.563	INTERGENIC
2L	15029924	2L_15029924_SNP [dm3] 2L_15029924_SNP [dm6]	C	T	3.075e^-5	0.583	DOWNSTREAM CG33310 INTRON GABA-B-R1
2R	14410942	2R_14410942_SNP [dm3] 2R_18523437_SNP [dm6]	C	G	3.165e^-5	0.594	UTR_3_PRIME CG43066 INTRON CG43066

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