DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.525e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1866 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21528351	3R_21528351_SNP [dm3] 3R_25702629_SNP [dm6]	A	C	4.262e^-7	0.504	INTRON LpR2
3R	7168233	3R_7168233_SNP [dm3] 3R_11342511_SNP [dm6]	A	G	6.411e^-7	0.504	INTRON pros
3R	26433094	3R_26433094_SNP [dm3] 3R_30607372_SNP [dm6]	T	C	8.072e^-7	0.504	SYNONYMOUS_CODING CG31016	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27514710	3R_27514710_SNP [dm3] 3R_31688988_SNP [dm6]	C	T	1.560e^-6	0.594	UPSTREAM CR45564 DOWNSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21528368	3R_21528368_SNP [dm3] 3R_25702646_SNP [dm6]	C	T	1.586e^-6	0.594	INTRON LpR2
3R	26433105	3R_26433105_SNP [dm3] 3R_30607383_SNP [dm6]	T	C	2.323e^-6	0.726	SYNONYMOUS_CODING CG31016	TF binding site mE1_TFBS_HSA
3R	23251858	3R_23251858_SNP [dm3] 3R_27426136_SNP [dm6]	A	G	3.750e^-6	0.822	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9405546	3R_9405546_SNP [dm3] 3R_13579824_SNP [dm6]	C	T	3.946e^-6	0.822	INTERGENIC
3R	19742311	3R_19742311_SNP [dm3] 3R_23916589_SNP [dm6]	A	G	4.732e^-6	0.822	INTRON sba
3R	9410299	3R_9410299_SNP [dm3] 3R_13584577_SNP [dm6]	T	G	4.940e^-6	0.822	INTERGENIC
2R	13482620	2R_13482620_SNP [dm3] 2R_17595115_SNP [dm6]	T	G	5.163e^-6	0.822	UPSTREAM CG11423 INTRON lack
3L	11475004	3L_11475004_SNP [dm3] 3L_11481904_SNP [dm6]	G	T	5.326e^-6	0.822	INTERGENIC
3R	27529361	3R_27529361_SNP [dm3] 3R_31703639_SNP [dm6]	A	G	5.702e^-6	0.822	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	27514532	3R_27514532_SNP [dm3] 3R_31688810_SNP [dm6]	G	A	6.148e^-6	0.823	UPSTREAM CR45564 DOWNSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	10586705	2L_10586705_SNP [dm3] 2L_10586705_SNP [dm6]	T	C	6.647e^-6	0.831	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24597238	3R_24597238_SNP [dm3] 3R_28771516_SNP [dm6]	C	G	7.787e^-6	0.912	INTERGENIC
3R	23796610	3R_23796610_SNP [dm3] 3R_27970888_SNP [dm6]	G	T	9.380e^-6	0.961	INTRON betaTub97EF
3R	23251596	3R_23251596_SNP [dm3] 3R_27425874_SNP [dm6]	A	T	1.035e^-5	0.961	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24922132	3R_24922132_SNP [dm3] 3R_29096410_SNP [dm6]	A	T	1.219e^-5	0.961	INTRON CG11873 EXON CR45030
3R	25960278	3R_25960278_SNP [dm3] 3R_30134556_SNP [dm6]	A	C	1.289e^-5	0.961	UTR_5_PRIME Tpi UPSTREAM Tpi DOWNSTREAM AdoR	TF binding site mE1_TFBS_cad
3R	21444521	3R_21444521_SNP [dm3] 3R_25618799_SNP [dm6]	G	T	1.343e^-5	0.961	NON_SYNONYMOUS_CODING CG5071 INTRON Npl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12597357	X_12597357_SNP [dm3] X_12703324_SNP [dm6]	C	T	1.595e^-5	0.961	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16552096	2L_16552096_SNP [dm3] 2L_16552096_SNP [dm6]	G	A	1.625e^-5	0.961	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9262770	3L_9262770_INS [dm3] 3L_9269670_INS [dm6]	A	AAATA	1.681e^-5	0.961	INTRON GluRIB
3R	21444522	3R_21444522_SNP [dm3] 3R_25618800_SNP [dm6]	T	A	1.738e^-5	0.961	NON_SYNONYMOUS_CODING CG5071 INTRON Npl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14356571	2R_14356571_SNP [dm3] 2R_18469066_SNP [dm6]	C	T	1.859e^-5	0.961	INTRON CG30116
3R	9410009	3R_9410009_SNP [dm3] 3R_13584287_SNP [dm6]	C	T	1.897e^-5	0.961	INTERGENIC
3R	18788804	3R_18788804_SNP [dm3] 3R_22963082_SNP [dm6]	C	T	1.911e^-5	0.961	DOWNSTREAM CR43655 INTERGENIC
2L	11383645	2L_11383645_DEL [dm3] 2L_11383645_DEL [dm6]	TTATA	T	2.017e^-5	0.961	INTERGENIC	regulatory region REDfly_CRMs
3R	9035531	3R_9035531_SNP [dm3] 3R_13209809_SNP [dm6]	A	C	2.024e^-5	0.961	INTRON CG8483
3R	18458281	3R_18458281_SNP [dm3] 3R_22632559_SNP [dm6]	T	C	2.024e^-5	0.961	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25141415	3R_25141415_SNP [dm3] 3R_29315693_SNP [dm6]	T	A	2.087e^-5	0.961	UTR_3_PRIME Cnx99A DOWNSTREAM Cnx99A
3R	23396396	3R_23396396_DEL [dm3] 3R_27570674_DEL [dm6]	TGCTA	T	2.095e^-5	0.961	INTRON wdb	TF binding site BDTNP1_TFBS_da
2L	5472629	2L_5472629_SNP [dm3] 2L_5472629_SNP [dm6]	C	T	2.098e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6979872	2R_6979872_SNP [dm3] 2R_11092367_SNP [dm6]	T	C	2.144e^-5	0.961	INTRON luna
2R	9777744	2R_9777744_SNP [dm3] 2R_13890239_SNP [dm6]	C	T	2.184e^-5	0.961	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
3L	13171658	3L_13171658_SNP [dm3] 3L_13178558_SNP [dm6]	A	C	2.218e^-5	0.961	INTERGENIC
3L	7328017	3L_7328017_SNP [dm3] 3L_7334917_SNP [dm6]	A	T	2.230e^-5	0.961	DOWNSTREAM eco INTRON CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13451789	3R_13451789_SNP [dm3] 3R_17626067_SNP [dm6]	A	T	2.255e^-5	0.961	UTR_3_PRIME AttD
2R	16365130	2R_16365130_SNP [dm3] 2R_20477625_SNP [dm6]	G	T	2.323e^-5	0.961	INTRON CG12484
3R	25134754	3R_25134754_INS [dm3] 3R_29309032_INS [dm6]	A	AC	2.541e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21108954	3R_21108954_INS [dm3] 3R_25283232_INS [dm6]	A	AT	2.617e^-5	0.961	UTR_3_PRIME CG11892 UPSTREAM CG31300
3L	9262772	3L_9262772_SNP [dm3] 3L_9269672_SNP [dm6]	T	A	2.620e^-5	0.961	INTRON GluRIB
3R	9408558	3R_9408558_SNP [dm3] 3R_13582836_SNP [dm6]	A	G	2.726e^-5	0.961	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18902921	3R_18902921_SNP [dm3] 3R_23077199_SNP [dm6]	A	C	2.758e^-5	0.961	INTRON CG13830
3R	23417311	3R_23417311_SNP [dm3] 3R_27591589_SNP [dm6]	G	A	2.777e^-5	0.961	INTRON CG5639
3R	11982059	3R_11982059_SNP [dm3] 3R_16156337_SNP [dm6]	A	G	2.821e^-5	0.961	INTRON CG6006
3R	5682098	3R_5682098_SNP [dm3] 3R_9856376_SNP [dm6]	C	T	2.825e^-5	0.961	INTRON Teh1
X	9327281	X_9327281_SNP [dm3] X_9433248_SNP [dm6]	G	C	2.918e^-5	0.961	INTRON mgl
3R	17758193	3R_17758193_SNP [dm3] 3R_21932471_SNP [dm6]	A	T	2.986e^-5	0.961	INTERGENIC
X	4283162	X_4283162_SNP [dm3] X_4389129_SNP [dm6]	A	C	2.997e^-5	0.961	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16877075	3R_16877075_SNP [dm3] 3R_21051353_SNP [dm6]	A	T	3.045e^-5	0.961	UPSTREAM CG17279 DOWNSTREAM Mvl INTERGENIC
2L	10412804	2L_10412804_SNP [dm3] 2L_10412804_SNP [dm6]	A	G	3.088e^-5	0.961	SYNONYMOUS_CODING CG5355	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4657820	2R_4657820_SNP [dm3] 2R_8770315_SNP [dm6]	C	T	3.293e^-5	0.961	INTERGENIC
3L	12153398	3L_12153398_INS [dm3] 3L_12160298_INS [dm6]	G	GGCAAGTTTTGAGCGCACTC...	3.300e^-5	0.961	INTRON CG9760
2L	9460627	2L_9460627_SNP [dm3] 2L_9460627_SNP [dm6]	A	G	3.336e^-5	0.961	SYNONYMOUS_CODING numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23501386	3R_23501386_SNP [dm3] 3R_27675664_SNP [dm6]	C	G	3.531e^-5	0.961	INTRON unc80	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20805648	2R_20805648_SNP [dm3] 2R_24918125_SNP [dm6]	T	A	3.637e^-5	0.961	NON_SYNONYMOUS_CODING NaCP60E UTR_3_PRIME NaCP60E	TF binding site mE1_TFBS_cad
3R	5693676	3R_5693676_SNP [dm3] 3R_9867954_SNP [dm6]	A	C	3.786e^-5	0.961	UTR_5_PRIME Teh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	21444511	3R_21444511_SNP [dm3] 3R_25618789_SNP [dm6]	C	T	3.924e^-5	0.961	NON_SYNONYMOUS_CODING CG5071 INTRON Npl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11581555	3L_11581555_SNP [dm3] 3L_11588455_SNP [dm6]	A	G	3.963e^-5	0.961	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8699269	2R_8699269_SNP [dm3] 2R_12811764_SNP [dm6]	C	T	4.093e^-5	0.961	INTERGENIC
2R	19920212	2R_19920212_SNP [dm3] 2R_24032689_SNP [dm6]	G	A	4.202e^-5	0.961	SYNONYMOUS_CODING Chi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23250529	3R_23250529_SNP [dm3] 3R_27424807_SNP [dm6]	A	C	4.303e^-5	0.961	INTRON side
3L	15685869	3L_15685869_SNP [dm3] 3L_15692769_SNP [dm6]	A	G	4.309e^-5	0.961	UPSTREAM CG34451 INTERGENIC
3L	19260084	3L_19260084_SNP [dm3] 3L_19266984_SNP [dm6]	A	T	4.318e^-5	0.961	SYNONYMOUS_CODING CG9629 DOWNSTREAM CG45081 & 2 others	TF binding site mE1_TFBS_cad
2R	7056990	2R_7056990_SNP [dm3] 2R_11169485_SNP [dm6]	C	G	4.319e^-5	0.961	INTRON shn & 1 other
2R	14341572	2R_14341572_SNP [dm3] 2R_18454067_SNP [dm6]	C	T	4.357e^-5	0.961	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14968312	2R_14968312_SNP [dm3] 2R_19080807_SNP [dm6]	C	T	4.519e^-5	0.961	INTRON 5-HT1A
2L	10412604	2L_10412604_SNP [dm3] 2L_10412604_SNP [dm6]	C	A	4.520e^-5	0.961	INTRON CG5355	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12462736	2R_12462736_SNP [dm3] 2R_16575231_SNP [dm6]	C	T	4.538e^-5	0.961	SYNONYMOUS_CODING CG8317	TF binding site mE1_TFBS_inv
X	10867965	X_10867965_SNP [dm3] X_10973932_SNP [dm6]	G	A	4.564e^-5	0.961	INTRON CG42339
3R	23244259	3R_23244259_SNP [dm3] 3R_27418537_SNP [dm6]	T	C	4.575e^-5	0.961	UTR_5_PRIME side	TF binding site mE1_TFBS_HSA
X	5954122	X_5954122_SNP [dm3] X_6060089_SNP [dm6]	C	A	4.613e^-5	0.961	SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
3R	16686222	3R_16686222_SNP [dm3] 3R_20860500_SNP [dm6]	A	T	4.704e^-5	0.961	UTR_3_PRIME CG3822 UPSTREAM Ir93a
2L	10585873	2L_10585873_SNP [dm3] 2L_10585873_SNP [dm6]	C	A	4.706e^-5	0.961	INTRON Trim9
3R	24922664	3R_24922664_SNP [dm3] 3R_29096942_SNP [dm6]	C	T	4.779e^-5	0.961	DOWNSTREAM CR45030 INTRON CG11873
3L	5959851	3L_5959851_SNP [dm3] 3L_5966751_SNP [dm6]	C	T	4.789e^-5	0.961	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16048632	3L_16048632_SNP [dm3] 3L_16055532_SNP [dm6]	G	A	4.806e^-5	0.961	INTRON Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11383643	2L_11383643_SNP [dm3] 2L_11383643_SNP [dm6]	A	T	4.829e^-5	0.961	INTERGENIC	regulatory region REDfly_CRMs
3R	22983234	3R_22983234_SNP [dm3] 3R_27157512_SNP [dm6]	A	T	4.867e^-5	0.961	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
2L	16798239	2L_16798239_SNP [dm3] 2L_16798239_SNP [dm6]	G	A	4.881e^-5	0.961	NON_SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
2L	16380515	2L_16380515_SNP [dm3] 2L_16380515_SNP [dm6]	T	A	4.965e^-5	0.961	INTERGENIC
3R	19207422	3R_19207422_SNP [dm3] 3R_23381700_SNP [dm6]	G	C	5.016e^-5	0.961	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad
2L	10585916	2L_10585916_SNP [dm3] 2L_10585916_SNP [dm6]	T	C	5.023e^-5	0.961	INTRON Trim9
X	2372952	X_2372952_SNP [dm3] X_2478919_SNP [dm6]	G	T	5.090e^-5	0.961	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3L	5520122	3L_5520122_SNP [dm3] 3L_5527022_SNP [dm6]	G	C	5.177e^-5	0.961	INTRON Lkr
2L	9440547	2L_9440547_SNP [dm3] 2L_9440547_SNP [dm6]	G	A	5.253e^-5	0.961	SYNONYMOUS_CODING CG33723 INTRON numb
3R	6827471	3R_6827471_SNP [dm3] 3R_11001749_SNP [dm6]	C	T	5.663e^-5	0.961	INTRON CG34114
2R	7056991	2R_7056991_DEL [dm3] 2R_11169486_DEL [dm6]	TGC	T	5.718e^-5	0.961	INTRON shn & 1 other
2L	20491447	2L_20491447_SNP [dm3] 2L_20491447_SNP [dm6]	C	T	5.809e^-5	0.961	INTERGENIC
2L	6771880	2L_6771880_SNP [dm3] 2L_6771880_SNP [dm6]	A	C	5.820e^-5	0.961	UPSTREAM CG11321 INTRON CG11321
2R	15078229	2R_15078229_SNP [dm3] 2R_19190724_SNP [dm6]	G	A	5.867e^-5	0.961	INTRON hppy
3R	23186580	3R_23186580_SNP [dm3] 3R_27360858_SNP [dm6]	T	A	5.881e^-5	0.961	INTRON CG42534
2R	4655545	2R_4655545_SNP [dm3] 2R_8768040_SNP [dm6]	G	T	5.884e^-5	0.961	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
4	170407	4_170407_SNP [dm3] 4_149781_SNP [dm6]	G	C	5.940e^-5	0.961	UPSTREAM CG32006 INTERGENIC
2L	6159103	2L_6159103_SNP [dm3] 2L_6159103_SNP [dm6]	C	T	6.127e^-5	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21444402	3R_21444402_SNP [dm3] 3R_25618680_SNP [dm6]	G	C	6.174e^-5	0.961	NON_SYNONYMOUS_CODING CG5071 INTRON Npl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19742106	3R_19742106_SNP [dm3] 3R_23916384_SNP [dm6]	T	G	6.476e^-5	0.961	INTRON sba
2R	16834430	2R_16834430_SNP [dm3] 2R_20946925_SNP [dm6]	A	C	6.510e^-5	0.961	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	13792562	2R_13792562_SNP [dm3] 2R_17905057_SNP [dm6]	T	C	6.675e^-5	0.961	INTRON Elk
3L	7327891	3L_7327891_SNP [dm3] 3L_7334791_SNP [dm6]	G	T	6.687e^-5	0.961	SYNONYMOUS_CODING CG43780 UTR_5_PRIME CG43781 DOWNSTREAM eco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7327992	3L_7327992_SNP [dm3] 3L_7334892_SNP [dm6]	C	T	6.687e^-5	0.961	UTR_5_PRIME CG43781 & 1 other DOWNSTREAM eco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7327996	3L_7327996_SNP [dm3] 3L_7334896_SNP [dm6]	G	T	6.687e^-5	0.961	SPLICE_SITE_REGION CG43780 & 1 other UTR_5_PRIME CG43781 & 1 other DOWNSTREAM eco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16380571	2L_16380571_SNP [dm3] 2L_16380571_SNP [dm6]	T	A	6.900e^-5	0.961	INTERGENIC
X	15419989	X_15419989_SNP [dm3] X_15525956_SNP [dm6]	C	A	7.017e^-5	0.961	INTRON Ac13E
2R	20125816	2R_20125816_SNP [dm3] 2R_24238293_SNP [dm6]	T	A	7.160e^-5	0.961	EXON CR44827
3R	9402287	3R_9402287_INS [dm3] 3R_13576565_INS [dm6]	C	CC	7.372e^-5	0.961	INTERGENIC
3R	1345460	3R_1345460_SNP [dm3] 3R_5519738_SNP [dm6]	A	G	7.426e^-5	0.961	INTRON Nmdar1 & 1 other	TF binding site mE1_TFBS_HSA
2L	9442486	2L_9442486_SNP [dm3] 2L_9442486_SNP [dm6]	C	T	7.502e^-5	0.961	INTRON numb
3L	5601690	3L_5601690_SNP [dm3] 3L_5608590_SNP [dm6]	G	C	7.511e^-5	0.961	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17876751	2L_17876751_SNP [dm3] 2L_17876751_SNP [dm6]	A	G	7.573e^-5	0.961	INTERGENIC
2L	8184567	2L_8184567_SNP [dm3] 2L_8184567_SNP [dm6]	T	C	7.574e^-5	0.961	INTRON Piezo
2L	9442478	2L_9442478_SNP [dm3] 2L_9442478_SNP [dm6]	T	A	7.574e^-5	0.961	INTRON numb
X	15453787	X_15453787_SNP [dm3] X_15559754_SNP [dm6]	T	C	7.594e^-5	0.961	INTERGENIC
3R	26914130	3R_26914130_SNP [dm3] 3R_31088408_SNP [dm6]	A	C	7.688e^-5	0.961	INTERGENIC
X	5698734	X_5698734_SNP [dm3] X_5804701_SNP [dm6]	A	C	7.729e^-5	0.961	UTR_5_PRIME Cpr5C
3L	15043106	3L_15043106_SNP [dm3] 3L_15050006_SNP [dm6]	T	G	7.879e^-5	0.961	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta
3R	23485191	3R_23485191_SNP [dm3] 3R_27659469_SNP [dm6]	G	A	8.012e^-5	0.961	INTRON Mlc1
3L	604070	3L_604070_SNP [dm3] 3L_604070_SNP [dm6]	C	T	8.112e^-5	0.961	UPSTREAM CG13893 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8266381	X_8266381_SNP [dm3] X_8372348_SNP [dm6]	T	C	8.206e^-5	0.961	INTERGENIC
3R	24613931	3R_24613931_DEL [dm3] 3R_28788209_DEL [dm6]	ATA	A	8.214e^-5	0.961	INTERGENIC
3R	27545389	3R_27545389_SNP [dm3] 3R_31719667_SNP [dm6]	T	G	8.245e^-5	0.961	INTRON ttk
2L	8184575	2L_8184575_DEL [dm3] 2L_8184575_DEL [dm6]	TT	T	8.313e^-5	0.961	INTRON Piezo
3L	13171608	3L_13171608_SNP [dm3] 3L_13178508_SNP [dm6]	G	A	8.329e^-5	0.961	INTERGENIC
3L	13171639	3L_13171639_SNP [dm3] 3L_13178539_SNP [dm6]	A	T	8.329e^-5	0.961	INTERGENIC
3L	13171640	3L_13171640_SNP [dm3] 3L_13178540_SNP [dm6]	C	T	8.329e^-5	0.961	INTERGENIC
3R	23499576	3R_23499576_SNP [dm3] 3R_27673854_SNP [dm6]	C	T	8.489e^-5	0.961	INTRON unc80	TF binding site mE1_TFBS_chinmo
3L	7328462	3L_7328462_SNP [dm3] 3L_7335362_SNP [dm6]	T	G	8.527e^-5	0.961	UPSTREAM CG43780 & 1 other DOWNSTREAM eco INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11118519	3L_11118519_SNP [dm3] 3L_11125419_SNP [dm6]	T	G	8.647e^-5	0.961	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	7327086	3L_7327086_SNP [dm3] 3L_7333986_SNP [dm6]	A	G	8.714e^-5	0.961	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18470870	3R_18470870_SNP [dm3] 3R_22645148_SNP [dm6]	C	G	8.722e^-5	0.961	INTRON CG45058
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	8.741e^-5	0.961	INTERGENIC
3R	27514497	3R_27514497_INS [dm3] 3R_31688775_INS [dm6]	A	AA	8.760e^-5	0.961	UPSTREAM CR45564 DOWNSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	9398948	3R_9398948_SNP [dm3] 3R_13573226_SNP [dm6]	G	A	8.789e^-5	0.961	INTERGENIC
3L	7866391	3L_7866391_SNP [dm3] 3L_7873291_SNP [dm6]	G	T	8.804e^-5	0.961	INTRON CG32365
2L	3723709	2L_3723709_SNP [dm3] 2L_3723709_SNP [dm6]	T	A	8.818e^-5	0.961	SYNONYMOUS_CODING Shaw
2R	4654281	2R_4654281_SNP [dm3] 2R_8766776_SNP [dm6]	C	A	8.836e^-5	0.961	INTERGENIC
X	8289337	X_8289337_SNP [dm3] X_8395304_SNP [dm6]	A	T	8.838e^-5	0.961	INTERGENIC
2L	8961309	2L_8961309_SNP [dm3] 2L_8961309_SNP [dm6]	T	C	8.858e^-5	0.961	NON_SYNONYMOUS_CODING CG9525	TF binding site mE1_TFBS_HSA
3R	22843972	3R_22843972_SNP [dm3] 3R_27018250_SNP [dm6]	T	A	8.879e^-5	0.961	NON_SYNONYMOUS_CODING CG17192 DOWNSTREAM CG17191 INTRON RYa-R
3R	22821820	3R_22821820_SNP [dm3] 3R_26996098_SNP [dm6]	C	G	8.952e^-5	0.961	NON_SYNONYMOUS_CODING TwdlC UPSTREAM RYa-R	TF binding site mE1_TFBS_chinmo
3R	26444320	3R_26444320_SNP [dm3] 3R_30618598_SNP [dm6]	A	T	9.021e^-5	0.961	DOWNSTREAM CG44954 INTERGENIC
3L	5959305	3L_5959305_SNP [dm3] 3L_5966205_SNP [dm6]	G	T	9.035e^-5	0.961	INTERGENIC
3R	23142808	3R_23142808_SNP [dm3] 3R_27317086_SNP [dm6]	A	G	9.099e^-5	0.961	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9955807	2R_9955807_INS [dm3] 2R_14068302_INS [dm6]	C	CC	9.130e^-5	0.961	INTRON Prosap
X	9327294	X_9327294_SNP [dm3] X_9433261_SNP [dm6]	C	T	9.180e^-5	0.961	INTRON mgl
2L	3195187	2L_3195187_SNP [dm3] 2L_3195187_SNP [dm6]	A	T	9.192e^-5	0.961	INTRON CG34393
3R	5312361	3R_5312361_SNP [dm3] 3R_9486639_SNP [dm6]	T	C	9.224e^-5	0.961	UTR_5_PRIME CG16779
3R	11502141	3R_11502141_SNP [dm3] 3R_15676419_SNP [dm6]	T	C	9.231e^-5	0.961	INTRON pxb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14169566	3L_14169566_SNP [dm3] 3L_14176466_SNP [dm6]	G	A	9.263e^-5	0.961	SYNONYMOUS_CODING D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18458303	3R_18458303_SNP [dm3] 3R_22632581_SNP [dm6]	T	G	9.352e^-5	0.961	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18081760	2R_18081760_SNP [dm3] 2R_22194255_SNP [dm6]	A	G	9.439e^-5	0.961	INTRON Swim
3L	12156936	3L_12156936_SNP [dm3] 3L_12163836_SNP [dm6]	C	T	9.465e^-5	0.961	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5959282	3L_5959282_SNP [dm3] 3L_5966182_SNP [dm6]	C	T	9.473e^-5	0.961	INTERGENIC
3L	5959292	3L_5959292_SNP [dm3] 3L_5966192_SNP [dm6]	T	A	9.473e^-5	0.961	INTERGENIC
2L	3692704	2L_3692704_SNP [dm3] 2L_3692704_SNP [dm6]	T	A	9.516e^-5	0.961	UTR_3_PRIME CG3513 UPSTREAM CG16704 DOWNSTREAM CG34340 & 1 other
2R	20116538	2R_20116538_SNP [dm3] 2R_24229015_SNP [dm6]	G	A	9.614e^-5	0.961	INTRON CG30419	TF binding site mE1_TFBS_chinmo
3R	11982096	3R_11982096_SNP [dm3] 3R_16156374_SNP [dm6]	A	T	9.632e^-5	0.961	INTRON CG6006
3L	15442256	3L_15442256_SNP [dm3] 3L_15449156_SNP [dm6]	C	G	9.657e^-5	0.961	INTERGENIC
X	13131678	X_13131678_SNP [dm3] X_13237645_SNP [dm6]	G	A	9.712e^-5	0.961	INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18744560	3R_18744560_SNP [dm3] 3R_22918838_SNP [dm6]	C	T	9.733e^-5	0.961	INTRON klg
3R	18625018	3R_18625018_SNP [dm3] 3R_22799296_SNP [dm6]	C	T	9.826e^-5	0.961	INTERGENIC
3R	18458299	3R_18458299_SNP [dm3] 3R_22632577_SNP [dm6]	G	A	9.857e^-5	0.961	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4149277	2L_4149277_SNP [dm3] 2L_4149277_SNP [dm6]	C	T	9.997e^-5	0.961	UPSTREAM CG2955 INTERGENIC
3L	13171627	3L_13171627_SNP [dm3] 3L_13178527_SNP [dm6]	C	A	1.006e^-4	0.961	INTERGENIC
X	20155890	X_20155890_DEL [dm3] X_20284863_DEL [dm6]	GCACACACGCACATGCACA...	G	1.011e^-4	0.961	INTERGENIC
3R	18711538	3R_18711538_MNP [dm3] 3R_22885816_MNP [dm6]	CAC	GTT	1.018e^-4	0.961	INTERGENIC
2R	11568954	2R_11568954_SNP [dm3] 2R_15681449_SNP [dm6]	C	T	1.020e^-4	0.961	SYNONYMOUS_CODING CG30091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18625006	3R_18625006_SNP [dm3] 3R_22799284_SNP [dm6]	G	A	1.022e^-4	0.961	INTERGENIC
2R	9457023	2R_9457023_SNP [dm3] 2R_13569518_SNP [dm6]	C	T	1.032e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	17782568	2R_17782568_SNP [dm3] 2R_21895063_SNP [dm6]	G	A	1.036e^-4	0.961	INTRON Fili
3R	7966526	3R_7966526_SNP [dm3] 3R_12140804_SNP [dm6]	G	C	1.039e^-4	0.961	INTRON dpr15
2R	5330710	2R_5330710_SNP [dm3] 2R_9443205_SNP [dm6]	C	A	1.052e^-4	0.961	INTRON ced-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11154507	3L_11154507_SNP [dm3] 3L_11161407_SNP [dm6]	A	C	1.073e^-4	0.961	INTRON CG32082	TF binding site mE1_TFBS_cad
3R	16222945	3R_16222945_SNP [dm3] 3R_20397223_SNP [dm6]	G	A	1.077e^-4	0.961	INTRON Gfrl
2R	6957962	2R_6957962_INS [dm3] 2R_11070457_INS [dm6]	A	AGAAAGGC	1.083e^-4	0.961	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17407616	2L_17407616_SNP [dm3] 2L_17407616_SNP [dm6]	C	T	1.099e^-4	0.961	SYNONYMOUS_CODING CLIP-190	TF binding site mE1_TFBS_sens
3R	23177212	3R_23177212_SNP [dm3] 3R_27351490_SNP [dm6]	A	T	1.099e^-4	0.961	INTRON CG42534
3L	5959821	3L_5959821_SNP [dm3] 3L_5966721_SNP [dm6]	A	G	1.102e^-4	0.961	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5960224	3L_5960224_SNP [dm3] 3L_5967124_SNP [dm6]	A	G	1.109e^-4	0.961	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	6967009	2R_6967009_SNP [dm3] 2R_11079504_SNP [dm6]	G	T	1.113e^-4	0.961	INTRON luna
X	7423658	X_7423658_SNP [dm3] X_7529625_SNP [dm6]	T	C	1.121e^-4	0.961	DOWNSTREAM CG43138 INTRON CG32719
3R	23499507	3R_23499507_SNP [dm3] 3R_27673785_SNP [dm6]	C	T	1.135e^-4	0.961	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3L	14901868	3L_14901868_SNP [dm3] 3L_14908768_SNP [dm6]	T	C	1.136e^-4	0.961	INTRON DCX-EMAP
2L	17614540	2L_17614540_SNP [dm3] 2L_17614540_SNP [dm6]	T	G	1.149e^-4	0.961	INTERGENIC
3R	16996341	3R_16996341_SNP [dm3] 3R_21170619_SNP [dm6]	G	A	1.172e^-4	0.961	INTRON SNF4Agamma
2R	9955814	2R_9955814_SNP [dm3] 2R_14068309_SNP [dm6]	G	T	1.174e^-4	0.961	INTRON Prosap
2R	9955809	2R_9955809_SNP [dm3] 2R_14068304_SNP [dm6]	A	T	1.176e^-4	0.961	INTRON Prosap
3R	16996332	3R_16996332_SNP [dm3] 3R_21170610_SNP [dm6]	A	T	1.184e^-4	0.961	INTRON SNF4Agamma
2L	6771886	2L_6771886_SNP [dm3] 2L_6771886_SNP [dm6]	C	G	1.199e^-4	0.961	UPSTREAM CG11321 INTRON CG11321
3R	16996337	3R_16996337_SNP [dm3] 3R_21170615_SNP [dm6]	C	T	1.204e^-4	0.961	INTRON SNF4Agamma
3R	24414150	3R_24414150_SNP [dm3] 3R_28588428_SNP [dm6]	G	T	1.207e^-4	0.961	DOWNSTREAM MRE23 EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7822752	3R_7822752_DEL [dm3] 3R_11997030_DEL [dm6]	AT	A	1.208e^-4	0.961	INTRON Tk
3R	13301200	3R_13301200_SNP [dm3] 3R_17475478_SNP [dm6]	C	T	1.209e^-4	0.961	INTRON Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26435128	3R_26435128_DEL [dm3] 3R_30609406_DEL [dm6]	CG	T	1.212e^-4	0.961	UTR_3_PRIME CG31016
3L	8889550	3L_8889550_SNP [dm3] 3L_8896450_SNP [dm6]	G	A	1.217e^-4	0.961	INTRON TrpA1	TF binding site mE1_TFBS_cad
3R	22090060	3R_22090060_SNP [dm3] 3R_26264338_SNP [dm6]	T	C	1.225e^-4	0.961	INTRON CG6154
2L	11380801	2L_11380801_SNP [dm3] 2L_11380801_SNP [dm6]	A	G	1.226e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
3R	13301201	3R_13301201_SNP [dm3] 3R_17475479_SNP [dm6]	A	G	1.233e^-4	0.961	INTRON Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24806678	3R_24806678_SNP [dm3] 3R_28980956_SNP [dm6]	C	T	1.234e^-4	0.961	INTERGENIC
2R	20547338	2R_20547338_SNP [dm3] 2R_24659815_SNP [dm6]	A	C	1.236e^-4	0.961	INTERGENIC
3L	2158800	3L_2158800_SNP [dm3] 3L_2158800_SNP [dm6]	A	G	1.237e^-4	0.961	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_inv
3R	26435138	3R_26435138_DEL [dm3] 3R_30609416_DEL [dm6]	TGATTGTAGTC...	T	1.239e^-4	0.961	UTR_3_PRIME CG31016
X	21942749	X_21942749_SNP [dm3] X_22540913_SNP [dm6]	A	T	1.254e^-4	0.961	UPSTREAM CG17598 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8182077	2R_8182077_SNP [dm3] 2R_12294572_SNP [dm6]	C	T	1.258e^-4	0.961	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25960362	3R_25960362_SNP [dm3] 3R_30134640_SNP [dm6]	T	C	1.259e^-4	0.961	UPSTREAM Tpi DOWNSTREAM AdoR INTERGENIC
2L	14964032	2L_14964032_SNP [dm3] 2L_14964032_SNP [dm6]	A	T	1.277e^-4	0.961	INTRON CG42313
3L	958029	3L_958029_SNP [dm3] 3L_958029_SNP [dm6]	G	A	1.279e^-4	0.961	INTRON Glut1
3R	23499589	3R_23499589_SNP [dm3] 3R_27673867_SNP [dm6]	C	A	1.282e^-4	0.961	SPLICE_SITE_REGION unc80 INTRON unc80	TF binding site mE1_TFBS_chinmo
3R	26444321	3R_26444321_SNP [dm3] 3R_30618599_SNP [dm6]	A	T	1.287e^-4	0.961	DOWNSTREAM CG44954 INTERGENIC
3R	7966533	3R_7966533_SNP [dm3] 3R_12140811_SNP [dm6]	C	T	1.298e^-4	0.961	INTRON dpr15
3R	27567292	3R_27567292_SNP [dm3] 3R_31741570_SNP [dm6]	C	A	1.317e^-4	0.961	INTRON Ef1alpha100E	TF binding site mE1_TFBS_chinmo
3R	9918724	3R_9918724_SNP [dm3] 3R_14093002_SNP [dm6]	C	A	1.317e^-4	0.961	SYNONYMOUS_CODING CCHa1 DOWNSTREAM Npc2b
X	285923	X_285923_SNP [dm3] X_391890_SNP [dm6]	G	T	1.321e^-4	0.961	INTRON CG32816 EXON CR44753	TF binding site BDTNP1_TFBS_twi
X	8959169	X_8959169_SNP [dm3] X_9065136_SNP [dm6]	G	C	1.328e^-4	0.961	INTRON CG15365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8959170	X_8959170_SNP [dm3] X_9065137_SNP [dm6]	G	T	1.328e^-4	0.961	INTRON CG15365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6967058	2R_6967058_SNP [dm3] 2R_11079553_SNP [dm6]	A	G	1.332e^-4	0.961	INTRON luna
3R	23613433	3R_23613433_SNP [dm3] 3R_27787711_SNP [dm6]	C	T	1.350e^-4	0.961	INTRON CG34353
3R	23613534	3R_23613534_SNP [dm3] 3R_27787812_SNP [dm6]	A	T	1.352e^-4	0.961	INTRON CG34353
2L	6587900	2L_6587900_SNP [dm3] 2L_6587900_SNP [dm6]	G	A	1.358e^-4	0.961	INTRON CG11319
2R	19990363	2R_19990363_SNP [dm3] 2R_24102840_SNP [dm6]	T	C	1.360e^-4	0.961	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad
3R	9918718	3R_9918718_SNP [dm3] 3R_14092996_SNP [dm6]	C	T	1.364e^-4	0.961	SYNONYMOUS_CODING CCHa1 DOWNSTREAM Npc2b
2L	11392201	2L_11392201_SNP [dm3] 2L_11392201_SNP [dm6]	T	G	1.367e^-4	0.961	INTRON CR43681	regulatory region REDfly_CRMs
3R	16224724	3R_16224724_SNP [dm3] 3R_20399002_SNP [dm6]	C	G	1.369e^-4	0.961	INTRON Gfrl
3R	13301241	3R_13301241_SNP [dm3] 3R_17475519_SNP [dm6]	G	T	1.372e^-4	0.961	INTRON Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10816889	3L_10816889_SNP [dm3] 3L_10823789_SNP [dm6]	G	A	1.390e^-4	0.961	INTERGENIC
2L	4348831	2L_4348831_SNP [dm3] 2L_4348831_SNP [dm6]	G	A	1.390e^-4	0.961	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10085240	3R_10085240_SNP [dm3] 3R_14259518_SNP [dm6]	G	A	1.390e^-4	0.961	SYNONYMOUS_CODING Aats-met DOWNSTREAM CG14840	TF binding site BDTNP1_TFBS_dl
3R	19689896	3R_19689896_SNP [dm3] 3R_23864174_SNP [dm6]	C	T	1.393e^-4	0.961	INTRON Pli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	27523314	3R_27523314_SNP [dm3] 3R_31697592_SNP [dm6]	A	C	1.396e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	3369699	2L_3369699_SNP [dm3] 2L_3369699_SNP [dm6]	A	T	1.399e^-4	0.961	UPSTREAM CG34394 INTRON CG34394
3R	26758155	3R_26758155_SNP [dm3] 3R_30932433_SNP [dm6]	T	C	1.401e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17963637	3R_17963637_SNP [dm3] 3R_22137915_SNP [dm6]	G	A	1.405e^-4	0.961	INTRON SKIP
3R	27514457	3R_27514457_SNP [dm3] 3R_31688735_SNP [dm6]	G	T	1.407e^-4	0.961	UPSTREAM CR45564 DOWNSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	16996344	3R_16996344_SNP [dm3] 3R_21170622_SNP [dm6]	T	A	1.414e^-4	0.961	INTRON SNF4Agamma
2R	8979436	2R_8979436_SNP [dm3] 2R_13091931_SNP [dm6]	T	A	1.427e^-4	0.961	INTERGENIC
2R	16907139	2R_16907139_SNP [dm3] 2R_21019634_SNP [dm6]	T	A	1.430e^-4	0.961	INTRON RIC-3
3L	13171522	3L_13171522_SNP [dm3] 3L_13178422_SNP [dm6]	C	T	1.432e^-4	0.961	INTERGENIC
3R	27576325	3R_27576325_SNP [dm3] 3R_31750603_SNP [dm6]	T	C	1.437e^-4	0.961	INTRON CG1910	TF binding site mE1_TFBS_sens
2L	931623	2L_931623_SNP [dm3] 2L_931623_SNP [dm6]	G	C	1.442e^-4	0.961	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	12168370	X_12168370_DEL [dm3] X_12274337_DEL [dm6]	GTAG	G	1.446e^-4	0.961	UPSTREAM CG45603 INTRON Ten-a
X	4858547	X_4858547_SNP [dm3] X_4964514_SNP [dm6]	C	T	1.448e^-4	0.961	INTRON CR44833
2L	14436483	2L_14436483_SNP [dm3] 2L_14436483_SNP [dm6]	C	T	1.454e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	17782276	3L_17782276_SNP [dm3] 3L_17789176_SNP [dm6]	C	T	1.455e^-4	0.961	INTERGENIC
3R	19924856	3R_19924856_SNP [dm3] 3R_24099134_SNP [dm6]	T	C	1.458e^-4	0.961	INTRON 4EHP
2L	16798240	2L_16798240_SNP [dm3] 2L_16798240_SNP [dm6]	G	C	1.461e^-4	0.961	SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
3L	9388596	3L_9388596_SNP [dm3] 3L_9395496_SNP [dm6]	T	C	1.470e^-4	0.961	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	19209416	3R_19209416_SNP [dm3] 3R_23383694_SNP [dm6]	A	G	1.472e^-4	0.961	UPSTREAM CG4393 INTRON CG4393
X	17622145	X_17622145_SNP [dm3] X_17728112_SNP [dm6]	T	C	1.483e^-4	0.961	INTRON CG42684
2R	6981149	2R_6981149_SNP [dm3] 2R_11093644_SNP [dm6]	T	A	1.491e^-4	0.961	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11376727	2L_11376727_SNP [dm3] 2L_11376727_SNP [dm6]	C	G	1.502e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
2R	12462742	2R_12462742_SNP [dm3] 2R_16575237_SNP [dm6]	C	T	1.505e^-4	0.961	SYNONYMOUS_CODING CG8317	TF binding site mE1_TFBS_inv
3L	5520088	3L_5520088_SNP [dm3] 3L_5526988_SNP [dm6]	C	G	1.531e^-4	0.961	INTRON Lkr
2R	10568525	2R_10568525_SNP [dm3] 2R_14681020_SNP [dm6]	G	T	1.538e^-4	0.961	INTRON mspo
X	20220795	X_20220795_SNP [dm3] X_20349768_SNP [dm6]	C	T	1.545e^-4	0.961	INTERGENIC
3L	5520087	3L_5520087_SNP [dm3] 3L_5526987_SNP [dm6]	T	C	1.550e^-4	0.961	INTRON Lkr
3R	25866046	3R_25866046_SNP [dm3] 3R_30040324_SNP [dm6]	G	A	1.560e^-4	0.961	SYNONYMOUS_CODING Sry-beta UPSTREAM janA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	12967649	X_12967649_SNP [dm3] X_13073616_SNP [dm6]	T	C	1.562e^-4	0.961	INTRON rad
X	13414306	X_13414306_SNP [dm3] X_13520273_SNP [dm6]	C	A	1.569e^-4	0.961	DOWNSTREAM Neto INTRON Neto
3R	20406319	3R_20406319_SNP [dm3] 3R_24580597_SNP [dm6]	T	C	1.573e^-4	0.961	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9610871	X_9610871_SNP [dm3] X_9716838_SNP [dm6]	G	C	1.578e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	18902519	3R_18902519_SNP [dm3] 3R_23076797_SNP [dm6]	T	C	1.578e^-4	0.961	INTRON CG13830
3R	23504478	3R_23504478_SNP [dm3] 3R_27678756_SNP [dm6]	C	T	1.585e^-4	0.961	NON_SYNONYMOUS_CODING CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	15954633	2R_15954633_SNP [dm3] 2R_20067128_SNP [dm6]	A	T	1.586e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4197769	2L_4197769_SNP [dm3] 2L_4197769_SNP [dm6]	G	C	1.590e^-4	0.961	UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	20129483	2R_20129483_SNP [dm3] 2R_24241960_SNP [dm6]	G	T	1.590e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20129527	2R_20129527_SNP [dm3] 2R_24242004_SNP [dm6]	A	T	1.590e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9585281	2L_9585281_SNP [dm3] 2L_9585281_SNP [dm6]	T	G	1.591e^-4	0.961	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	27513466	3R_27513466_SNP [dm3] 3R_31687744_SNP [dm6]	C	T	1.597e^-4	0.961	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17878562	2L_17878562_SNP [dm3] 2L_17878562_SNP [dm6]	G	A	1.606e^-4	0.961	INTERGENIC
3R	22983147	3R_22983147_SNP [dm3] 3R_27157425_SNP [dm6]	A	G	1.610e^-4	0.961	UTR_3_PRIME Men-b UPSTREAM grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_Trl
3L	7328939	3L_7328939_SNP [dm3] 3L_7335839_SNP [dm6]	C	G	1.612e^-4	0.961	NON_SYNONYMOUS_CODING eco UPSTREAM CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	11804286	2R_11804286_SNP [dm3] 2R_15916781_SNP [dm6]	C	T	1.613e^-4	0.961	INTRON sli EXON CR44373	TF binding site mE1_TFBS_cad
3R	14675594	3R_14675594_SNP [dm3] 3R_18849872_SNP [dm6]	C	T	1.618e^-4	0.961	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13452613	3R_13452613_SNP [dm3] 3R_17626891_SNP [dm6]	G	T	1.619e^-4	0.961	UPSTREAM CG14325 DOWNSTREAM AttD INTERGENIC
3L	3264891	3L_3264891_SNP [dm3] 3L_3264891_SNP [dm6]	C	T	1.619e^-4	0.961	INTRON ckd
2R	16541867	2R_16541867_SNP [dm3] 2R_20654362_SNP [dm6]	G	A	1.622e^-4	0.961	INTRON Lrt & 1 other
3R	18471256	3R_18471256_SNP [dm3] 3R_22645534_SNP [dm6]	C	T	1.625e^-4	0.961	INTRON CG45058
2R	6995252	2R_6995252_SNP [dm3] 2R_11107747_SNP [dm6]	G	A	1.625e^-4	0.961	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8266298	X_8266298_SNP [dm3] X_8372265_SNP [dm6]	T	A	1.638e^-4	0.961	INTERGENIC
3R	25044700	3R_25044700_SNP [dm3] 3R_29218978_SNP [dm6]	C	A	1.642e^-4	0.961	EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27138249	3R_27138249_INS [dm3] 3R_31312527_INS [dm6]	A	ACCAGAGC	1.648e^-4	0.961	INTRON CG34347
3R	23941316	3R_23941316_SNP [dm3] 3R_28115594_SNP [dm6]	C	T	1.653e^-4	0.961	INTERGENIC
2L	4077112	2L_4077112_DEL [dm3] 2L_4077112_DEL [dm6]	TTTTTTGTTGTTACGCT...	T	1.673e^-4	0.961	INTRON ed
2L	17509555	2L_17509555_SNP [dm3] 2L_17509555_SNP [dm6]	C	T	1.674e^-4	0.961	SYNONYMOUS_CODING Dhc36C
2L	1670198	2L_1670198_SNP [dm3] 2L_1670198_SNP [dm6]	T	G	1.675e^-4	0.961	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	6155485	2R_6155485_SNP [dm3] 2R_10267980_SNP [dm6]	A	G	1.680e^-4	0.961	SYNONYMOUS_CODING CG12910	TF binding site mE1_TFBS_chinmo
4	259159	4_259159_SNP [dm3] 4_238533_SNP [dm6]	C	T	1.680e^-4	0.961	INTRON CG1674
3R	25231352	3R_25231352_SNP [dm3] 3R_29405630_SNP [dm6]	G	A	1.687e^-4	0.961	INTRON Ptp99A
2L	1669364	2L_1669364_DEL [dm3] 2L_1669364_DEL [dm6]	AG	A	1.689e^-4	0.961	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4711791	2L_4711791_SNP [dm3] 2L_4711791_SNP [dm6]	A	G	1.694e^-4	0.961	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2L	4711793	2L_4711793_SNP [dm3] 2L_4711793_SNP [dm6]	A	G	1.694e^-4	0.961	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	10478505	2R_10478505_SNP [dm3] 2R_14591000_SNP [dm6]	A	G	1.694e^-4	0.961	UPSTREAM CG12869 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4735173	2L_4735173_SNP [dm3] 2L_4735173_SNP [dm6]	T	C	1.696e^-4	0.961	UTR_3_PRIME CG15630 UPSTREAM CG15631
3R	25149123	3R_25149123_SNP [dm3] 3R_29323401_SNP [dm6]	T	C	1.706e^-4	0.961	INTERGENIC
3L	11644438	3L_11644438_SNP [dm3] 3L_11651338_SNP [dm6]	C	A	1.716e^-4	0.961	DOWNSTREAM CG7339 INTRON CG32085
3R	20406431	3R_20406431_SNP [dm3] 3R_24580709_SNP [dm6]	A	C	1.719e^-4	0.961	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20974765	3R_20974765_SNP [dm3] 3R_25149043_SNP [dm6]	T	C	1.720e^-4	0.961	INTERGENIC
3L	16186765	3L_16186765_SNP [dm3] 3L_16193665_SNP [dm6]	A	T	1.721e^-4	0.961	INTERGENIC
3R	17025770	3R_17025770_SNP [dm3] 3R_21200048_SNP [dm6]	C	A	1.724e^-4	0.961	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	23177249	3R_23177249_SNP [dm3] 3R_27351527_SNP [dm6]	T	C	1.731e^-4	0.961	INTRON CG42534
X	12168353	X_12168353_DEL [dm3] X_12274320_DEL [dm6]	TACTGGT	T	1.737e^-4	0.961	UPSTREAM CG45603 INTRON Ten-a
3R	22999409	3R_22999409_SNP [dm3] 3R_27173687_SNP [dm6]	G	T	1.738e^-4	0.961	SYNONYMOUS_CODING Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	27155389	3R_27155389_SNP [dm3] 3R_31329667_SNP [dm6]	A	G	1.741e^-4	0.961	INTRON CG34347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23468987	3R_23468987_SNP [dm3] 3R_27643265_SNP [dm6]	C	A	1.746e^-4	0.961	UPSTREAM mir-1001 INTRON tau
2L	4782054	2L_4782054_SNP [dm3] 2L_4782054_SNP [dm6]	G	T	1.748e^-4	0.961	INTRON CG15630
3L	6241037	3L_6241037_SNP [dm3] 3L_6247937_SNP [dm6]	A	G	1.755e^-4	0.961	SYNONYMOUS_CODING Best2
3L	20091957	3L_20091957_SNP [dm3] 3L_20098857_SNP [dm6]	G	T	1.759e^-4	0.961	UTR_3_PRIME CG14186	TF binding site mE1_TFBS_cad
3L	16731737	3L_16731737_SNP [dm3] 3L_16738637_SNP [dm6]	C	T	1.763e^-4	0.961	INTRON CG9701	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4884406	2R_4884406_SNP [dm3] 2R_8996901_SNP [dm6]	G	T	1.766e^-4	0.961	SYNONYMOUS_CODING Np	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16996327	3R_16996327_SNP [dm3] 3R_21170605_SNP [dm6]	A	C	1.767e^-4	0.961	INTRON SNF4Agamma
2R	20089219	2R_20089219_SNP [dm3] 2R_24201696_SNP [dm6]	A	G	1.768e^-4	0.961	DOWNSTREAM CG11406 INTRON CG3356
3L	11407108	3L_11407108_SNP [dm3] 3L_11414008_SNP [dm6]	C	T	1.771e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14356549	2R_14356549_SNP [dm3] 2R_18469044_SNP [dm6]	G	A	1.782e^-4	0.961	INTRON CG30116
3R	26291621	3R_26291621_SNP [dm3] 3R_30465899_SNP [dm6]	A	T	1.786e^-4	0.961	UPSTREAM PH4alphaEFB DOWNSTREAM CDase INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	970361	3L_970361_SNP [dm3] 3L_970361_SNP [dm6]	T	G	1.792e^-4	0.961	INTRON Glut1
2R	17782590	2R_17782590_SNP [dm3] 2R_21895085_SNP [dm6]	A	G	1.794e^-4	0.961	INTRON Fili
3L	10547749	3L_10547749_SNP [dm3] 3L_10554649_SNP [dm6]	C	T	1.795e^-4	0.961	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10353392	2R_10353392_SNP [dm3] 2R_14465887_SNP [dm6]	A	T	1.797e^-4	0.961	DOWNSTREAM Oaz INTERGENIC
2L	12296532	2L_12296532_INS [dm3] 2L_12296532_INS [dm6]	T	TT	1.798e^-4	0.961	INTRON aret
3R	27134577	3R_27134577_SNP [dm3] 3R_31308855_SNP [dm6]	C	T	1.798e^-4	0.961	INTERGENIC
X	14747996	X_14747996_INS [dm3] X_14853963_INS [dm6]	T	TGAAATAAAAA...	1.806e^-4	0.961	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	25009934	3R_25009934_SNP [dm3] 3R_29184212_SNP [dm6]	C	A	1.812e^-4	0.961	INTRON CG14509
X	4706230	X_4706230_SNP [dm3] X_4812197_SNP [dm6]	A	T	1.815e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10145146	X_10145146_DEL [dm3] X_10251113_DEL [dm6]	TT	T	1.834e^-4	0.961	INTRON Hk
3L	11292322	3L_11292322_SNP [dm3] 3L_11299222_SNP [dm6]	C	T	1.840e^-4	0.961	INTERGENIC
2L	1669590	2L_1669590_SNP [dm3] 2L_1669590_SNP [dm6]	G	T	1.848e^-4	0.961	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	489437	2L_489437_SNP [dm3] 2L_489437_SNP [dm6]	G	A	1.859e^-4	0.961	INTRON ush
3R	27529379	3R_27529379_SNP [dm3] 3R_31703657_SNP [dm6]	A	T	1.862e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv
2R	4455577	2R_4455577_SNP [dm3] 2R_8568072_SNP [dm6]	G	A	1.863e^-4	0.961	UPSTREAM Cyp6a14 INTERGENIC
3L	5960170	3L_5960170_SNP [dm3] 3L_5967070_SNP [dm6]	G	T	1.870e^-4	0.961	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	25771709	3R_25771709_SNP [dm3] 3R_29945987_SNP [dm6]	A	G	1.878e^-4	0.961	SYNONYMOUS_CODING CG15523
3R	21108852	3R_21108852_SNP [dm3] 3R_25283130_SNP [dm6]	C	T	1.880e^-4	0.961	UTR_3_PRIME CG11892 UPSTREAM CG31300
3L	13171603	3L_13171603_INS [dm3] 3L_13178503_INS [dm6]	A	ATAGTGAATATG...	1.882e^-4	0.961	INTERGENIC
3L	16487744	3L_16487744_SNP [dm3] 3L_16494644_SNP [dm6]	C	T	1.888e^-4	0.961	INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17963709	3R_17963709_SNP [dm3] 3R_22137987_SNP [dm6]	C	A	1.890e^-4	0.961	INTRON SKIP
2R	9453130	2R_9453130_SNP [dm3] 2R_13565625_SNP [dm6]	C	G	1.891e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	6800608	3R_6800608_SNP [dm3] 3R_10974886_SNP [dm6]	A	C	1.913e^-4	0.961	INTRON CG34114
2R	15078415	2R_15078415_SNP [dm3] 2R_19190910_SNP [dm6]	T	A	1.918e^-4	0.961	INTRON hppy
3R	10061195	3R_10061195_SNP [dm3] 3R_14235473_SNP [dm6]	T	A	1.932e^-4	0.961	INTERGENIC
3R	27668232	3R_27668232_SNP [dm3] 3R_31842510_SNP [dm6]	C	T	1.937e^-4	0.961	UTR_3_PRIME RhoGAP100F
3R	26858393	3R_26858393_SNP [dm3] 3R_31032671_SNP [dm6]	A	G	1.939e^-4	0.961	INTERGENIC
2L	3727288	2L_3727288_SNP [dm3] 2L_3727288_SNP [dm6]	G	C	1.940e^-4	0.961	UTR_3_PRIME Shaw
3R	9398208	3R_9398208_SNP [dm3] 3R_13572486_SNP [dm6]	C	G	1.944e^-4	0.961	INTERGENIC
3L	11869704	3L_11869704_SNP [dm3] 3L_11876604_SNP [dm6]	G	A	1.945e^-4	0.961	INTRON CG44837
X	261080	X_261080_SNP [dm3] X_367047_SNP [dm6]	C	G	1.963e^-4	0.961	DOWNSTREAM yar INTRON CG32816 EXON yar
3R	23186581	3R_23186581_SNP [dm3] 3R_27360859_SNP [dm6]	T	C	1.963e^-4	0.961	INTRON CG42534
3L	11014158	3L_11014158_SNP [dm3] 3L_11021058_SNP [dm6]	G	A	1.964e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	18711637	3R_18711637_SNP [dm3] 3R_22885915_SNP [dm6]	T	G	1.965e^-4	0.961	INTERGENIC
2L	3195180	2L_3195180_DEL [dm3] 2L_3195180_DEL [dm6]	AT	A	1.965e^-4	0.961	INTRON CG34393
2R	15982697	2R_15982697_SNP [dm3] 2R_20095192_SNP [dm6]	A	G	1.966e^-4	0.961	INTERGENIC
3R	27582312	3R_27582312_SNP [dm3] 3R_31756590_SNP [dm6]	C	T	1.970e^-4	0.961	INTRON CG2187
2L	16112360	2L_16112360_SNP [dm3] 2L_16112360_SNP [dm6]	T	C	1.987e^-4	0.961	INTERGENIC
3R	5693621	3R_5693621_SNP [dm3] 3R_9867899_SNP [dm6]	T	A	1.990e^-4	0.961	UTR_5_PRIME Teh1	TF binding site BDTNP1_TFBS_dl
3R	23573825	3R_23573825_SNP [dm3] 3R_27748103_SNP [dm6]	T	A	1.992e^-4	0.961	UTR_3_PRIME Ets98B DOWNSTREAM Ets98B
4	131038	4_131038_SNP [dm3] 4_110412_SNP [dm6]	C	A	2.003e^-4	0.961	UTR_3_PRIME pan DOWNSTREAM pan
2R	16365128	2R_16365128_SNP [dm3] 2R_20477623_SNP [dm6]	T	G	2.004e^-4	0.961	INTRON CG12484
2L	18051296	2L_18051296_SNP [dm3] 2L_18051296_SNP [dm6]	A	C	2.011e^-4	0.961	INTRON rdo
3R	23760578	3R_23760578_SNP [dm3] 3R_27934856_SNP [dm6]	C	T	2.019e^-4	0.961	SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23760764	3R_23760764_SNP [dm3] 3R_27935042_SNP [dm6]	G	A	2.019e^-4	0.961	SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17127233	2R_17127233_SNP [dm3] 2R_21239728_SNP [dm6]	A	G	2.029e^-4	0.961	INTRON ASPP
3L	6239481	3L_6239481_SNP [dm3] 3L_6246381_SNP [dm6]	A	T	2.035e^-4	0.961	UTR_3_PRIME Best2 UPSTREAM Mdr65
2R	5327347	2R_5327347_SNP [dm3] 2R_9439842_SNP [dm6]	A	G	2.043e^-4	0.961	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	9768921	X_9768921_SNP [dm3] X_9874888_SNP [dm6]	T	G	2.043e^-4	0.961	NON_SYNONYMOUS_CODING CG15247 UPSTREAM CG32695	TF binding site mE1_TFBS_chinmo
3R	14470081	3R_14470081_SNP [dm3] 3R_18644359_SNP [dm6]	G	C	2.046e^-4	0.961	INTRON qin
3R	24634958	3R_24634958_SNP [dm3] 3R_28809236_SNP [dm6]	A	T	2.056e^-4	0.961	NON_SYNONYMOUS_CODING wdn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13769244	3R_13769244_SNP [dm3] 3R_17943522_SNP [dm6]	C	G	2.071e^-4	0.961	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	4023666	2L_4023666_SNP [dm3] 2L_4023666_SNP [dm6]	G	A	2.074e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4730566	2R_4730566_SNP [dm3] 2R_8843061_SNP [dm6]	C	A	2.091e^-4	0.961	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14653817	3R_14653817_SNP [dm3] 3R_18828095_SNP [dm6]	C	T	2.094e^-4	0.961	INTRON CG18208
2R	12442038	2R_12442038_SNP [dm3] 2R_16554533_SNP [dm6]	T	G	2.099e^-4	0.961	UPSTREAM Syn2 INTRON Syn2
3R	10160203	3R_10160203_SNP [dm3] 3R_14334481_SNP [dm6]	C	G	2.101e^-4	0.961	INTRON NK7.1
3R	21063832	3R_21063832_SNP [dm3] 3R_25238110_SNP [dm6]	T	C	2.106e^-4	0.961	INTRON CG11852
3R	16210992	3R_16210992_SNP [dm3] 3R_20385270_SNP [dm6]	T	C	2.107e^-4	0.961	INTRON Gfrl
3L	4706304	3L_4706304_SNP [dm3] 3L_4706304_SNP [dm6]	A	G	2.113e^-4	0.961	INTRON RhoGEF64C
3R	23311508	3R_23311508_SNP [dm3] 3R_27485786_SNP [dm6]	C	T	2.113e^-4	0.961	INTERGENIC
X	15170227	X_15170227_SNP [dm3] X_15276194_SNP [dm6]	G	A	2.121e^-4	0.961	INTERGENIC
3R	26274088	3R_26274088_SNP [dm3] 3R_30448366_SNP [dm6]	C	A	2.126e^-4	0.961	SYNONYMOUS_CODING aralar1
3L	840599	3L_840599_SNP [dm3] 3L_840599_SNP [dm6]	T	C	2.132e^-4	0.961	NON_SYNONYMOUS_CODING CG13902 UPSTREAM Gr61a DOWNSTREAM CG13887	TF binding site mE1_TFBS_sens
3L	10564811	3L_10564811_SNP [dm3] 3L_10571711_SNP [dm6]	G	A	2.143e^-4	0.961	INTRON A2bp1
3R	6800317	3R_6800317_SNP [dm3] 3R_10974595_SNP [dm6]	A	G	2.144e^-4	0.961	INTRON CG34114
X	7423567	X_7423567_SNP [dm3] X_7529534_SNP [dm6]	G	T	2.146e^-4	0.961	DOWNSTREAM CG43138 INTRON CG32719
3L	22452425	3L_22452425_SNP [dm3] 3L_22459325_SNP [dm6]	A	T	2.158e^-4	0.961	UTR_3_PRIME laza	TF binding site mE1_TFBS_cad
3L	841326	3L_841326_SNP [dm3] 3L_841326_SNP [dm6]	C	A	2.159e^-4	0.961	UTR_5_PRIME CG13902 UPSTREAM Gr61a
3R	16224583	3R_16224583_SNP [dm3] 3R_20398861_SNP [dm6]	A	G	2.165e^-4	0.961	INTRON Gfrl
3R	13769229	3R_13769229_SNP [dm3] 3R_17943507_SNP [dm6]	G	A	2.167e^-4	0.961	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	16644996	3R_16644996_SNP [dm3] 3R_20819274_SNP [dm6]	G	A	2.173e^-4	0.961	UTR_3_PRIME CG17271 UPSTREAM CG17270 DOWNSTREAM CG17271
2R	19774615	2R_19774615_SNP [dm3] 2R_23887092_SNP [dm6]	G	C	2.174e^-4	0.961	SYNONYMOUS_CODING CG5597
3R	22964495	3R_22964495_SNP [dm3] 3R_27138773_SNP [dm6]	T	G	2.182e^-4	0.961	INTRON CG6051
X	16904437	X_16904437_SNP [dm3] X_17010404_SNP [dm6]	G	T	2.190e^-4	0.961	INTRON CG45002
3L	17219917	3L_17219917_SNP [dm3] 3L_17226817_SNP [dm6]	T	G	2.207e^-4	0.961	INTRON Rbp6
2R	9455914	2R_9455914_SNP [dm3] 2R_13568409_SNP [dm6]	G	A	2.209e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	7977541	3R_7977541_SNP [dm3] 3R_12151819_SNP [dm6]	G	A	2.215e^-4	0.961	INTRON dpr15
2R	9455920	2R_9455920_SNP [dm3] 2R_13568415_SNP [dm6]	C	T	2.218e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	23417309	3R_23417309_SNP [dm3] 3R_27591587_SNP [dm6]	C	G	2.222e^-4	0.961	INTRON CG5639
2L	3723664	2L_3723664_SNP [dm3] 2L_3723664_SNP [dm6]	T	C	2.230e^-4	0.961	SYNONYMOUS_CODING Shaw
2L	20119351	2L_20119351_SNP [dm3] 2L_20119351_SNP [dm6]	G	A	2.235e^-4	0.961	INTERGENIC
2L	10412599	2L_10412599_SNP [dm3] 2L_10412599_SNP [dm6]	C	T	2.235e^-4	0.961	INTRON CG5355	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24806674	3R_24806674_DEL [dm3] 3R_28980952_DEL [dm6]	TAC	T	2.245e^-4	0.961	INTERGENIC
3R	14767493	3R_14767493_SNP [dm3] 3R_18941771_SNP [dm6]	G	C	2.245e^-4	0.961	INTRON CG42613
2R	13088731	2R_13088731_SNP [dm3] 2R_17201226_SNP [dm6]	C	A	2.245e^-4	0.961	INTERGENIC
3R	25319645	3R_25319645_SNP [dm3] 3R_29493923_SNP [dm6]	C	T	2.250e^-4	0.961	SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13088765	2R_13088765_SNP [dm3] 2R_17201260_SNP [dm6]	A	T	2.278e^-4	0.961	INTERGENIC
3R	13769249	3R_13769249_SNP [dm3] 3R_17943527_SNP [dm6]	A	C	2.278e^-4	0.961	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	14675562	3R_14675562_SNP [dm3] 3R_18849840_SNP [dm6]	A	T	2.278e^-4	0.961	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9457072	2R_9457072_SNP [dm3] 2R_13569567_SNP [dm6]	A	C	2.280e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
X	11436096	X_11436096_SNP [dm3] X_11542063_SNP [dm6]	A	G	2.308e^-4	0.961	INTRON Drak
X	10255623	X_10255623_SNP [dm3] X_10361590_SNP [dm6]	G	A	2.317e^-4	0.961	INTRON l_1_G0289
3R	27538531	3R_27538531_SNP [dm3] 3R_31712809_SNP [dm6]	C	T	2.319e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	27541554	3R_27541554_SNP [dm3] 3R_31715832_SNP [dm6]	G	T	2.319e^-4	0.961	INTRON ttk	TF binding site mE1_TFBS_Trl
3R	27541617	3R_27541617_SNP [dm3] 3R_31715895_SNP [dm6]	G	A	2.319e^-4	0.961	INTRON ttk	TF binding site mE1_TFBS_Trl
3R	27553910	3R_27553910_SNP [dm3] 3R_31728188_SNP [dm6]	C	G	2.319e^-4	0.961	SYNONYMOUS_CODING ttk	TF binding site mE1_TFBS_sens
2L	14249623	2L_14249623_SNP [dm3] 2L_14249623_SNP [dm6]	T	G	2.321e^-4	0.961	INTERGENIC
2L	15578276	2L_15578276_SNP [dm3] 2L_15578276_SNP [dm6]	T	C	2.323e^-4	0.961	INTRON kek3
2R	16286825	2R_16286825_SNP [dm3] 2R_20399320_SNP [dm6]	G	A	2.326e^-4	0.961	INTERGENIC
2R	9455929	2R_9455929_SNP [dm3] 2R_13568424_SNP [dm6]	C	G	2.326e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	13611951	2L_13611951_SNP [dm3] 2L_13611951_SNP [dm6]	A	G	2.331e^-4	0.961	INTRON kuz
X	9327312	X_9327312_SNP [dm3] X_9433279_SNP [dm6]	G	T	2.333e^-4	0.961	INTRON mgl
2L	16552116	2L_16552116_SNP [dm3] 2L_16552116_SNP [dm6]	A	C	2.336e^-4	0.961	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	11121200	3L_11121200_SNP [dm3] 3L_11128100_SNP [dm6]	C	T	2.340e^-4	0.961	INTRON CG42575
2L	1670306	2L_1670306_SNP [dm3] 2L_1670306_SNP [dm6]	A	C	2.342e^-4	0.961	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	1670361	2L_1670361_SNP [dm3] 2L_1670361_SNP [dm6]	G	A	2.342e^-4	0.961	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	7917696	X_7917696_SNP [dm3] X_8023663_SNP [dm6]	A	T	2.349e^-4	0.961	INTRON Tbh
2L	9442305	2L_9442305_SNP [dm3] 2L_9442305_SNP [dm6]	C	T	2.366e^-4	0.961	INTRON numb
X	2905189	X_2905189_SNP [dm3] X_3011156_SNP [dm6]	T	C	2.366e^-4	0.961	INTRON kirre
3R	25807620	3R_25807620_SNP [dm3] 3R_29981898_SNP [dm6]	T	A	2.367e^-4	0.961	INTERGENIC
2R	7060682	2R_7060682_SNP [dm3] 2R_11173177_SNP [dm6]	A	C	2.384e^-4	0.961	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	19656866	3R_19656866_SNP [dm3] 3R_23831144_SNP [dm6]	G	T	2.391e^-4	0.961	INTRON CG34355
3R	24046167	3R_24046167_SNP [dm3] 3R_28220445_SNP [dm6]	G	C	2.396e^-4	0.961	INTRON CG34354
2R	9458899	2R_9458899_SNP [dm3] 2R_13571394_SNP [dm6]	A	G	2.413e^-4	0.961	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	13301210	3R_13301210_SNP [dm3] 3R_17475488_SNP [dm6]	G	T	2.422e^-4	0.961	INTRON Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10160202	3R_10160202_SNP [dm3] 3R_14334480_SNP [dm6]	A	C	2.425e^-4	0.961	INTRON NK7.1
2R	14341449	2R_14341449_SNP [dm3] 2R_18453944_SNP [dm6]	C	G	2.430e^-4	0.961	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16060378	3R_16060378_SNP [dm3] 3R_20234656_SNP [dm6]	C	T	2.434e^-4	0.961	INTRON Nlg4
3R	22910659	3R_22910659_SNP [dm3] 3R_27084937_SNP [dm6]	T	C	2.434e^-4	0.961	INTRON Cpr97Ea
2L	10412630	2L_10412630_SNP [dm3] 2L_10412630_SNP [dm6]	A	G	2.436e^-4	0.961	SYNONYMOUS_CODING CG5355	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10294421	2L_10294421_INS [dm3] 2L_10294421_INS [dm6]	A	ACATA	2.469e^-4	0.961	INTRON Hand	regulatory region REDfly_CRMs
2R	14341358	2R_14341358_SNP [dm3] 2R_18453853_SNP [dm6]	C	T	2.482e^-4	0.961	NON_SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
3R	26162413	3R_26162413_SNP [dm3] 3R_30336691_SNP [dm6]	G	A	2.490e^-4	0.961	INTRON hdc
3R	18711622	3R_18711622_SNP [dm3] 3R_22885900_SNP [dm6]	T	A	2.498e^-4	0.961	INTERGENIC
2R	11957323	2R_11957323_SNP [dm3] 2R_16069818_SNP [dm6]	G	A	2.504e^-4	0.961	INTERGENIC
3L	665980	3L_665980_SNP [dm3] 3L_665980_SNP [dm6]	C	T	2.510e^-4	0.961	INTERGENIC
3R	16020451	3R_16020451_DEL [dm3] 3R_20194729_DEL [dm6]	AA	C	2.526e^-4	0.961	INTERGENIC
3L	9262754	3L_9262754_SNP [dm3] 3L_9269654_SNP [dm6]	G	A	2.527e^-4	0.961	INTRON GluRIB
3R	25866076	3R_25866076_SNP [dm3] 3R_30040354_SNP [dm6]	G	A	2.528e^-4	0.961	SYNONYMOUS_CODING Sry-beta UPSTREAM janA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7203405	3L_7203405_SNP [dm3] 3L_7210305_SNP [dm6]	A	G	2.532e^-4	0.961	INTERGENIC
3L	11869614	3L_11869614_INS [dm3] 3L_11876514_INS [dm6]	A	ATTA	2.539e^-4	0.961	INTRON CG44837
2L	18047367	2L_18047367_SNP [dm3] 2L_18047367_SNP [dm6]	G	C	2.543e^-4	0.961	INTRON rdo
3R	27572137	3R_27572137_SNP [dm3] 3R_31746415_SNP [dm6]	C	T	2.543e^-4	0.961	UPSTREAM awd DOWNSTREAM nero INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24580780	3R_24580780_SNP [dm3] 3R_28755058_SNP [dm6]	G	A	2.547e^-4	0.961	DOWNSTREAM CG9997 INTERGENIC
3R	14342993	3R_14342993_SNP [dm3] 3R_18517271_SNP [dm6]	C	G	2.547e^-4	0.961	INTRON fru
3R	23250123	3R_23250123_SNP [dm3] 3R_27424401_SNP [dm6]	C	G	2.550e^-4	0.961	INTRON side
2R	9455901	2R_9455901_SNP [dm3] 2R_13568396_SNP [dm6]	A	G	2.550e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	26944186	3R_26944186_SNP [dm3] 3R_31118464_SNP [dm6]	T	C	2.551e^-4	0.961	INTERGENIC
X	10663048	X_10663048_SNP [dm3] X_10769015_SNP [dm6]	C	T	2.553e^-4	0.961	SYNONYMOUS_CODING BTBD9 UPSTREAM Atg8a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_sens
3R	24922113	3R_24922113_SNP [dm3] 3R_29096391_SNP [dm6]	C	T	2.555e^-4	0.961	INTRON CG11873 EXON CR45030
2R	9337061	2R_9337061_SNP [dm3] 2R_13449556_SNP [dm6]	G	A	2.561e^-4	0.961	UPSTREAM cnn INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	21979538	3R_21979538_DEL [dm3] 3R_26153816_DEL [dm6]	TT	T	2.562e^-4	0.961	INTERGENIC
3R	23613525	3R_23613525_SNP [dm3] 3R_27787803_SNP [dm6]	G	C	2.566e^-4	0.961	INTRON CG34353
3L	3521251	3L_3521251_SNP [dm3] 3L_3521251_SNP [dm6]	A	C	2.568e^-4	0.961	INTRON Eip63E
3R	23401803	3R_23401803_SNP [dm3] 3R_27576081_SNP [dm6]	A	C	2.568e^-4	0.961	INTRON wdb
X	4290023	X_4290023_INS [dm3] X_4395990_INS [dm6]	T	TT	2.570e^-4	0.961	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10634036	3R_10634036_SNP [dm3] 3R_14808314_SNP [dm6]	C	T	2.571e^-4	0.961	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	15453776	X_15453776_SNP [dm3] X_15559743_SNP [dm6]	C	A	2.571e^-4	0.961	INTERGENIC
2L	15578289	2L_15578289_SNP [dm3] 2L_15578289_SNP [dm6]	C	T	2.572e^-4	0.961	INTRON kek3
2L	3430768	2L_3430768_SNP [dm3] 2L_3430768_SNP [dm6]	G	A	2.575e^-4	0.961	INTERGENIC
3L	12565544	3L_12565544_SNP [dm3] 3L_12572444_SNP [dm6]	T	C	2.582e^-4	0.961	UTR_5_PRIME sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	12078676	3R_12078676_SNP [dm3] 3R_16252954_SNP [dm6]	T	C	2.585e^-4	0.961	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13771137	3R_13771137_SNP [dm3] 3R_17945415_SNP [dm6]	A	G	2.596e^-4	0.961	INTRON cpo	TF binding site mE1_TFBS_Trl
2R	7390111	2R_7390111_SNP [dm3] 2R_11502606_SNP [dm6]	A	G	2.618e^-4	0.961	INTRON inv
3R	22628812	3R_22628812_SNP [dm3] 3R_26803090_SNP [dm6]	A	G	2.618e^-4	0.961	INTRON Tl	TF binding site mE1_TFBS_sens
3R	16908358	3R_16908358_SNP [dm3] 3R_21082636_SNP [dm6]	T	G	2.618e^-4	0.961	DOWNSTREAM RhoGAP93B INTERGENIC
3R	27135131	3R_27135131_SNP [dm3] 3R_31309409_SNP [dm6]	C	A	2.622e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11113357	2L_11113357_INS [dm3] 2L_11113357_INS [dm6]	T	TT	2.631e^-4	0.961	UPSTREAM Gr32a & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4560268	2L_4560268_SNP [dm3] 2L_4560268_SNP [dm6]	C	T	2.639e^-4	0.961	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13312904	3L_13312904_SNP [dm3] 3L_13319804_SNP [dm6]	A	G	2.649e^-4	0.961	INTERGENIC
3R	23524106	3R_23524106_SNP [dm3] 3R_27698384_SNP [dm6]	G	A	2.650e^-4	0.961	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3938551	2L_3938551_SNP [dm3] 2L_3938551_SNP [dm6]	A	G	2.651e^-4	0.961	INTRON fred
3R	25865369	3R_25865369_DEL [dm3] 3R_30039647_DEL [dm6]	ACTCAAAAAGAAA...	A	2.659e^-4	0.961	UPSTREAM Sry-beta & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	14234403	2L_14234403_SNP [dm3] 2L_14234403_SNP [dm6]	T	A	2.660e^-4	0.961	UPSTREAM CR44727 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9342812	X_9342812_SNP [dm3] X_9448779_SNP [dm6]	T	C	2.660e^-4	0.961	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	15684756	3L_15684756_SNP [dm3] 3L_15691656_SNP [dm6]	C	T	2.663e^-4	0.961	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16801790	3L_16801790_SNP [dm3] 3L_16808690_SNP [dm6]	C	T	2.664e^-4	0.961	SPLICE_SITE_REGION nudC UPSTREAM CG9674 DOWNSTREAM CG13024 INTRON nudC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sens
3L	665985	3L_665985_SNP [dm3] 3L_665985_SNP [dm6]	T	C	2.672e^-4	0.961	INTERGENIC
2L	1164230	2L_1164230_SNP [dm3] 2L_1164230_SNP [dm6]	G	A	2.678e^-4	0.961	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12156259	3L_12156259_SNP [dm3] 3L_12163159_SNP [dm6]	G	A	2.679e^-4	0.961	INTRON CG9760
2L	6681440	2L_6681440_SNP [dm3] 2L_6681440_SNP [dm6]	A	T	2.690e^-4	0.961	INTRON Nhe3	TF binding site mE1_TFBS_inv
2R	5816740	2R_5816740_SNP [dm3] 2R_9929235_SNP [dm6]	C	G	2.691e^-4	0.961	UTR_5_PRIME Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12536010	3L_12536010_SNP [dm3] 3L_12542910_SNP [dm6]	G	A	2.692e^-4	0.961	INTRON sowah EXON CR43612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11113731	2L_11113731_SNP [dm3] 2L_11113731_SNP [dm6]	G	C	2.704e^-4	0.961	UPSTREAM Gr32a & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8666403	2R_8666403_SNP [dm3] 2R_12778898_SNP [dm6]	C	T	2.705e^-4	0.961	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7324024	3L_7324024_SNP [dm3] 3L_7330924_SNP [dm6]	G	A	2.706e^-4	0.961	SYNONYMOUS_CODING mus312 UTR_3_PRIME CG42307	TF binding site mE1_TFBS_cad
3R	5683250	3R_5683250_SNP [dm3] 3R_9857528_SNP [dm6]	C	T	2.707e^-4	0.961	INTRON Teh1
2R	10581370	2R_10581370_SNP [dm3] 2R_14693865_SNP [dm6]	A	G	2.712e^-4	0.961	INTRON mspo
2R	9459276	2R_9459276_SNP [dm3] 2R_13571771_SNP [dm6]	A	G	2.726e^-4	0.961	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4710628	2L_4710628_SNP [dm3] 2L_4710628_SNP [dm6]	T	C	2.730e^-4	0.961	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	6834721	2R_6834721_SNP [dm3] 2R_10947216_SNP [dm6]	G	C	2.746e^-4	0.961	DOWNSTREAM CR45228 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	6973166	2R_6973166_SNP [dm3] 2R_11085661_SNP [dm6]	T	C	2.752e^-4	0.961	SYNONYMOUS_CODING CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6675866	3L_6675866_SNP [dm3] 3L_6682766_SNP [dm6]	T	A	2.753e^-4	0.961	INTERGENIC
X	16430123	X_16430123_SNP [dm3] X_16536090_SNP [dm6]	G	T	2.756e^-4	0.961	INTERGENIC
3L	11006141	3L_11006141_SNP [dm3] 3L_11013041_SNP [dm6]	T	G	2.763e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21008523	3R_21008523_SNP [dm3] 3R_25182801_SNP [dm6]	G	A	2.763e^-4	0.961	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20429585	2L_20429585_SNP [dm3] 2L_20429585_SNP [dm6]	T	C	2.770e^-4	0.961	INTRON CG31688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10081554	3R_10081554_SNP [dm3] 3R_14255832_SNP [dm6]	T	C	2.775e^-4	0.961	UPSTREAM CG43179 INTRON Aats-met	TF binding site BDTNP1_TFBS_twi
3R	17025861	3R_17025861_SNP [dm3] 3R_21200139_SNP [dm6]	G	T	2.782e^-4	0.961	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	27365085	3R_27365085_SNP [dm3] 3R_31539363_SNP [dm6]	G	A	2.784e^-4	0.961	INTERGENIC
2R	8979432	2R_8979432_SNP [dm3] 2R_13091927_SNP [dm6]	G	A	2.794e^-4	0.961	INTERGENIC
X	5287235	X_5287235_SNP [dm3] X_5393202_SNP [dm6]	G	A	2.797e^-4	0.961	INTRON SK
3R	6826875	3R_6826875_SNP [dm3] 3R_11001153_SNP [dm6]	A	T	2.806e^-4	0.961	INTRON CG34114
3R	10160198	3R_10160198_SNP [dm3] 3R_14334476_SNP [dm6]	C	G	2.822e^-4	0.961	INTRON NK7.1
2L	17878456	2L_17878456_SNP [dm3] 2L_17878456_SNP [dm6]	A	G	2.826e^-4	0.961	INTERGENIC
3R	9007076	3R_9007076_SNP [dm3] 3R_13181354_SNP [dm6]	C	T	2.829e^-4	0.961	SYNONYMOUS_CODING CG8138
3L	7302684	3L_7302684_SNP [dm3] 3L_7309584_SNP [dm6]	C	T	2.834e^-4	0.961	INTRON unc-13-4A
2R	10254504	2R_10254504_SNP [dm3] 2R_14366999_SNP [dm6]	A	C	2.835e^-4	0.961	UPSTREAM CG34443 DOWNSTREAM CG34184 INTRON CG34442
2L	18068518	2L_18068518_SNP [dm3] 2L_18068518_SNP [dm6]	A	G	2.843e^-4	0.961	INTRON rdo
3R	25151211	3R_25151211_DEL [dm3] 3R_29325489_DEL [dm6]	AAAAGTGTGTGCA...	A	2.843e^-4	0.961	INTERGENIC
2L	11380719	2L_11380719_SNP [dm3] 2L_11380719_SNP [dm6]	G	A	2.845e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
X	20763410	X_20763410_DEL [dm3] X_20892383_DEL [dm6]	AATTTG	C	2.857e^-4	0.961	INTRON shakB
3R	26435105	3R_26435105_DEL [dm3] 3R_30609383_DEL [dm6]	TCTGCATATGATTT...	T	2.864e^-4	0.961	UTR_3_PRIME CG31016
2L	9305321	2L_9305321_INS [dm3] 2L_9305321_INS [dm6]	A	ATTGCAGGGGTTTTA...	2.867e^-4	0.961	UPSTREAM CR42844 INTERGENIC
3R	23416009	3R_23416009_SNP [dm3] 3R_27590287_SNP [dm6]	T	C	2.877e^-4	0.961	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2123154	3L_2123154_SNP [dm3] 3L_2123154_SNP [dm6]	C	T	2.886e^-4	0.961	INTRON zormin
2R	11769534	2R_11769534_SNP [dm3] 2R_15882029_SNP [dm6]	T	G	2.897e^-4	0.961	INTRON sli
4	282703	4_282703_SNP [dm3] 4_262077_SNP [dm6]	A	C	2.904e^-4	0.961	NON_SYNONYMOUS_CODING RhoGAP102A INTRON RhoGAP102A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20126406	2R_20126406_DEL [dm3] 2R_24238883_DEL [dm6]	TTTCAGCCAAAT...	T	2.904e^-4	0.961	UPSTREAM CR44827 INTERGENIC
X	4285568	X_4285568_SNP [dm3] X_4391535_SNP [dm6]	A	C	2.917e^-4	0.961	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13088768	2R_13088768_SNP [dm3] 2R_17201263_SNP [dm6]	C	T	2.921e^-4	0.961	INTERGENIC
2L	14341663	2L_14341663_SNP [dm3] 2L_14341663_SNP [dm6]	T	C	2.928e^-4	0.961	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8684512	3L_8684512_SNP [dm3] 3L_8691412_SNP [dm6]	A	C	2.934e^-4	0.961	INTERGENIC
2R	13088726	2R_13088726_SNP [dm3] 2R_17201221_SNP [dm6]	A	T	2.936e^-4	0.961	INTERGENIC
3R	6826841	3R_6826841_SNP [dm3] 3R_11001119_SNP [dm6]	G	A	2.938e^-4	0.961	INTRON CG34114
2R	16386463	2R_16386463_SNP [dm3] 2R_20498958_SNP [dm6]	T	A	2.961e^-4	0.961	INTERGENIC
3R	4251963	3R_4251963_SNP [dm3] 3R_8426241_SNP [dm6]	C	G	2.965e^-4	0.961	INTRON CG45263
2L	6771870	2L_6771870_SNP [dm3] 2L_6771870_SNP [dm6]	C	T	2.965e^-4	0.961	UPSTREAM CG11321 INTRON CG11321
3R	20527414	3R_20527414_SNP [dm3] 3R_24701692_SNP [dm6]	T	A	2.968e^-4	0.961	INTRON slo
3L	9263055	3L_9263055_DEL [dm3] 3L_9269955_DEL [dm6]	AT	G	2.974e^-4	0.961	INTRON GluRIB
3R	25736660	3R_25736660_SNP [dm3] 3R_29910938_SNP [dm6]	C	T	2.978e^-4	0.961	SPLICE_SITE_REGION CG31036 INTRON CG31036	TF binding site mE1_TFBS_cad
2L	6771897	2L_6771897_SNP [dm3] 2L_6771897_SNP [dm6]	G	A	2.982e^-4	0.961	UPSTREAM CG11321 INTRON CG11321
3R	27532799	3R_27532799_SNP [dm3] 3R_31707077_SNP [dm6]	G	A	2.984e^-4	0.961	DOWNSTREAM CG42693 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2577067	3L_2577067_SNP [dm3] 3L_2577067_SNP [dm6]	T	A	2.988e^-4	0.961	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26612423	3R_26612423_SNP [dm3] 3R_30786701_SNP [dm6]	G	A	2.989e^-4	0.961	UTR_3_PRIME zfh1	TF binding site BDTNP1_TFBS_sna
X	16431703	X_16431703_SNP [dm3] X_16537670_SNP [dm6]	A	T	2.996e^-4	0.961	INTERGENIC
2R	4664638	2R_4664638_SNP [dm3] 2R_8777133_SNP [dm6]	C	A	3.014e^-4	0.961	INTERGENIC
2R	8410822	2R_8410822_SNP [dm3] 2R_12523317_SNP [dm6]	T	G	3.018e^-4	0.961	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23204690	3R_23204690_SNP [dm3] 3R_27378968_SNP [dm6]	C	T	3.025e^-4	0.961	UTR_3_PRIME side INTRON side
2L	1995539	2L_1995539_SNP [dm3] 2L_1995539_SNP [dm6]	G	A	3.026e^-4	0.961	INTERGENIC
3R	9569924	3R_9569924_SNP [dm3] 3R_13744202_SNP [dm6]	T	G	3.029e^-4	0.961	INTRON CG34383
3R	27515554	3R_27515554_SNP [dm3] 3R_31689832_SNP [dm6]	G	A	3.034e^-4	0.961	EXON CR45565	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10527619	3L_10527619_SNP [dm3] 3L_10534519_SNP [dm6]	T	G	3.045e^-4	0.961	INTRON A2bp1
X	19178986	X_19178986_SNP [dm3] X_19284953_SNP [dm6]	G	T	3.083e^-4	0.961	UPSTREAM CG8034 INTRON CG8034
X	19179014	X_19179014_SNP [dm3] X_19284981_SNP [dm6]	G	A	3.083e^-4	0.961	UPSTREAM CG8034 INTRON CG8034
3R	25148764	3R_25148764_SNP [dm3] 3R_29323042_SNP [dm6]	T	C	3.083e^-4	0.961	INTERGENIC
3L	7827705	3L_7827705_SNP [dm3] 3L_7834605_SNP [dm6]	T	C	3.093e^-4	0.961	INTRON Pdp1
2R	10320210	2R_10320210_SNP [dm3] 2R_14432705_SNP [dm6]	G	A	3.099e^-4	0.961	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19024518	3L_19024518_DEL [dm3] 3L_19031418_DEL [dm6]	TTTGT	T	3.101e^-4	0.961	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16834139	2R_16834139_SNP [dm3] 2R_20946634_SNP [dm6]	A	G	3.109e^-4	0.961	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC
X	5769874	X_5769874_SNP [dm3] X_5875841_SNP [dm6]	G	C	3.125e^-4	0.961	SYNONYMOUS_CODING mof	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10634026	3R_10634026_SNP [dm3] 3R_14808304_SNP [dm6]	A	G	3.126e^-4	0.961	SPLICE_SITE_REGION btsz INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26612396	3R_26612396_SNP [dm3] 3R_30786674_SNP [dm6]	G	T	3.140e^-4	0.961	UTR_3_PRIME zfh1	TF binding site BDTNP1_TFBS_sna
2R	17087840	2R_17087840_SNP [dm3] 2R_21200335_SNP [dm6]	C	G	3.143e^-4	0.961	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	2905197	X_2905197_SNP [dm3] X_3011164_SNP [dm6]	T	C	3.164e^-4	0.961	INTRON kirre
2R	8582511	2R_8582511_SNP [dm3] 2R_12695006_SNP [dm6]	C	T	3.170e^-4	0.961	INTERGENIC
3R	22975263	3R_22975263_SNP [dm3] 3R_27149541_SNP [dm6]	G	A	3.178e^-4	0.961	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4710756	2L_4710756_DEL [dm3] 2L_4710756_DEL [dm6]	CCCAAGT	C	3.179e^-4	0.961	INTRON CG34351	TF binding site mE1_TFBS_chinmo
X	8068019	X_8068019_SNP [dm3] X_8173986_SNP [dm6]	G	A	3.192e^-4	0.961	INTRON slpr
X	8068031	X_8068031_SNP [dm3] X_8173998_SNP [dm6]	G	A	3.192e^-4	0.961	INTRON slpr
3R	23820911	3R_23820911_SNP [dm3] 3R_27995189_SNP [dm6]	T	G	3.202e^-4	0.961	INTERGENIC
3L	14507943	3L_14507943_SNP [dm3] 3L_14514843_SNP [dm6]	T	G	3.202e^-4	0.961	INTRON bbg
3R	26634571	3R_26634571_SNP [dm3] 3R_30808849_SNP [dm6]	C	A	3.208e^-4	0.961	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
3R	5308744	3R_5308744_SNP [dm3] 3R_9483022_SNP [dm6]	G	A	3.236e^-4	0.961	DOWNSTREAM CR45203 INTRON CG16779
3R	22983233	3R_22983233_SNP [dm3] 3R_27157511_SNP [dm6]	T	C	3.257e^-4	0.961	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
3R	22856609	3R_22856609_SNP [dm3] 3R_27030887_SNP [dm6]	A	T	3.258e^-4	0.961	INTRON RYa-R
3R	6538554	3R_6538554_SNP [dm3] 3R_10712832_SNP [dm6]	T	A	3.260e^-4	0.961	INTERGENIC
2R	11838614	2R_11838614_SNP [dm3] 2R_15951109_SNP [dm6]	C	T	3.267e^-4	0.961	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
3R	13300666	3R_13300666_SNP [dm3] 3R_17474944_SNP [dm6]	G	T	3.271e^-4	0.961	UTR_3_PRIME Dscam3 INTRON Dscam3
3L	20893964	3L_20893964_SNP [dm3] 3L_20900864_SNP [dm6]	G	A	3.274e^-4	0.961	UPSTREAM CR45383 INTERGENIC
3R	27512885	3R_27512885_DEL [dm3] 3R_31687163_DEL [dm6]	AGTATAA	A	3.274e^-4	0.961	DOWNSTREAM CR45564 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2R	12739316	2R_12739316_SNP [dm3] 2R_16851811_SNP [dm6]	A	C	3.274e^-4	0.961	SYNONYMOUS_CODING IntS8	TF binding site mE1_TFBS_cad
2R	10581345	2R_10581345_SNP [dm3] 2R_14693840_SNP [dm6]	A	G	3.276e^-4	0.961	INTRON mspo
3L	14556516	3L_14556516_SNP [dm3] 3L_14563416_SNP [dm6]	T	C	3.281e^-4	0.961	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	7966519	3R_7966519_SNP [dm3] 3R_12140797_SNP [dm6]	C	G	3.281e^-4	0.961	INTRON dpr15
3L	12121359	3L_12121359_SNP [dm3] 3L_12128259_SNP [dm6]	C	G	3.285e^-4	0.961	SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
2R	18601401	2R_18601401_SNP [dm3] 2R_22713896_SNP [dm6]	G	A	3.297e^-4	0.961	SYNONYMOUS_CODING CG30268
2L	489204	2L_489204_SNP [dm3] 2L_489204_SNP [dm6]	T	C	3.303e^-4	0.961	INTRON ush	TF binding site mE1_TFBS_Trl
X	9768926	X_9768926_SNP [dm3] X_9874893_SNP [dm6]	C	T	3.303e^-4	0.961	SYNONYMOUS_CODING CG15247 UPSTREAM CG32695	TF binding site mE1_TFBS_chinmo
2L	1747620	2L_1747620_SNP [dm3] 2L_1747620_SNP [dm6]	C	A	3.311e^-4	0.961	INTRON CG17646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1747625	2L_1747625_SNP [dm3] 2L_1747625_SNP [dm6]	T	C	3.311e^-4	0.961	INTRON CG17646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10580643	2R_10580643_SNP [dm3] 2R_14693138_SNP [dm6]	T	C	3.314e^-4	0.961	INTRON mspo
4	213985	4_213985_SNP [dm3] 4_193359_SNP [dm6]	T	G	3.322e^-4	0.961	UTR_5_PRIME CG2316 INTRON CG2316	TF binding site BDTNP1_TFBS_dl
3R	24579930	3R_24579930_SNP [dm3] 3R_28754208_SNP [dm6]	T	A	3.326e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4426539	2L_4426539_SNP [dm3] 2L_4426539_SNP [dm6]	A	G	3.332e^-4	0.961	INTRON CG15431
3R	25150265	3R_25150265_SNP [dm3] 3R_29324543_SNP [dm6]	T	C	3.336e^-4	0.961	INTERGENIC
3R	23407106	3R_23407106_SNP [dm3] 3R_27581384_SNP [dm6]	C	T	3.341e^-4	0.961	START_GAINED wdb UTR_5_PRIME wdb INTRON wdb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17502673	2L_17502673_SNP [dm3] 2L_17502673_SNP [dm6]	T	C	3.344e^-4	0.961	INTRON Dhc36C	TF binding site mE1_TFBS_sbb
3L	6796325	3L_6796325_SNP [dm3] 3L_6803225_SNP [dm6]	T	C	3.346e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15411356	3R_15411356_SNP [dm3] 3R_19585634_SNP [dm6]	A	T	3.361e^-4	0.961	UTR_5_PRIME Dys UPSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15915393	3L_15915393_SNP [dm3] 3L_15922293_SNP [dm6]	A	G	3.362e^-4	0.961	INTRON sff
3L	12156252	3L_12156252_SNP [dm3] 3L_12163152_SNP [dm6]	T	A	3.365e^-4	0.961	INTRON CG9760
3L	12097294	3L_12097294_SNP [dm3] 3L_12104194_SNP [dm6]	A	C	3.378e^-4	0.961	INTERGENIC
3L	15513866	3L_15513866_SNP [dm3] 3L_15520766_SNP [dm6]	C	T	3.381e^-4	0.961	SYNONYMOUS_CODING yellow-k DOWNSTREAM CG7945 EXON CR43159	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27530018	3R_27530018_SNP [dm3] 3R_31704296_SNP [dm6]	G	A	3.388e^-4	0.961	DOWNSTREAM CR45052 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
X	9327347	X_9327347_SNP [dm3] X_9433314_SNP [dm6]	C	T	3.394e^-4	0.961	INTRON mgl
3L	11730874	3L_11730874_SNP [dm3] 3L_11737774_SNP [dm6]	C	T	3.396e^-4	0.961	INTRON CG6024
2L	9460282	2L_9460282_SNP [dm3] 2L_9460282_SNP [dm6]	A	G	3.401e^-4	0.961	UTR_5_PRIME numb INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20156843	X_20156843_SNP [dm3] X_20285816_SNP [dm6]	C	T	3.406e^-4	0.961	INTERGENIC
3L	16045060	3L_16045060_SNP [dm3] 3L_16051960_SNP [dm6]	C	T	3.410e^-4	0.961	UTR_5_PRIME Mbs UPSTREAM th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19687268	2R_19687268_SNP [dm3] 2R_23799745_SNP [dm6]	C	T	3.428e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4453221	2R_4453221_INS [dm3] 2R_8565716_INS [dm6]	A	AAC	3.432e^-4	0.961	FRAME_SHIFT Cyp6a14	TF binding site mE1_TFBS_cad
3L	19401796	3L_19401796_SNP [dm3] 3L_19408696_SNP [dm6]	G	T	3.439e^-4	0.961	INTRON CG32206
2L	12464233	2L_12464233_SNP [dm3] 2L_12464233_SNP [dm6]	A	T	3.440e^-4	0.961	INTRON bun
3R	23498802	3R_23498802_SNP [dm3] 3R_27673080_SNP [dm6]	A	G	3.440e^-4	0.961	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3L	5122735	3L_5122735_SNP [dm3] 3L_5129635_SNP [dm6]	C	A	3.443e^-4	0.961	UPSTREAM CG4597 INTERGENIC
X	19092993	X_19092993_SNP [dm3] X_19198960_SNP [dm6]	A	T	3.447e^-4	0.961	DOWNSTREAM CG7990 INTRON CG7990
3L	12156173	3L_12156173_SNP [dm3] 3L_12163073_SNP [dm6]	A	T	3.450e^-4	0.961	INTRON CG9760
3R	27528891	3R_27528891_SNP [dm3] 3R_31703169_SNP [dm6]	C	A	3.456e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	13312953	3L_13312953_SNP [dm3] 3L_13319853_SNP [dm6]	T	A	3.465e^-4	0.961	INTERGENIC
X	18488642	X_18488642_SNP [dm3] X_18594609_SNP [dm6]	A	T	3.468e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20129707	2R_20129707_SNP [dm3] 2R_24242184_SNP [dm6]	T	A	3.476e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12813187	2R_12813187_SNP [dm3] 2R_16925682_SNP [dm6]	G	T	3.477e^-4	0.961	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
3R	13769216	3R_13769216_SNP [dm3] 3R_17943494_SNP [dm6]	G	A	3.478e^-4	0.961	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	12464532	2L_12464532_SNP [dm3] 2L_12464532_SNP [dm6]	A	G	3.481e^-4	0.961	INTRON bun
3L	965089	3L_965089_SNP [dm3] 3L_965089_SNP [dm6]	C	T	3.486e^-4	0.961	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1463076	3L_1463076_SNP [dm3] 3L_1463076_SNP [dm6]	A	C	3.495e^-4	0.961	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	5321947	2R_5321947_SNP [dm3] 2R_9434442_SNP [dm6]	A	T	3.495e^-4	0.961	UTR_3_PRIME Pdk DOWNSTREAM ced-6 & 1 other
2R	4782048	2R_4782048_SNP [dm3] 2R_8894543_SNP [dm6]	C	A	3.500e^-4	0.961	SYNONYMOUS_CODING Sec31	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25738825	3R_25738825_SNP [dm3] 3R_29913103_SNP [dm6]	T	C	3.502e^-4	0.961	UTR_3_PRIME Capa DOWNSTREAM CG31036
2R	13829709	2R_13829709_SNP [dm3] 2R_17942204_SNP [dm6]	A	C	3.504e^-4	0.961	INTERGENIC
2R	2460540	2R_2460540_SNP [dm3] 2R_6573035_SNP [dm6]	C	T	3.508e^-4	0.961	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12091470	X_12091470_SNP [dm3] X_12197437_SNP [dm6]	C	A	3.509e^-4	0.961	INTRON Ten-a
X	12091473	X_12091473_SNP [dm3] X_12197440_SNP [dm6]	A	T	3.509e^-4	0.961	INTRON Ten-a
3R	23402427	3R_23402427_SNP [dm3] 3R_27576705_SNP [dm6]	G	A	3.514e^-4	0.961	INTRON wdb
3R	23402973	3R_23402973_SNP [dm3] 3R_27577251_SNP [dm6]	G	A	3.514e^-4	0.961	INTRON wdb
3R	7221339	3R_7221339_SNP [dm3] 3R_11395617_SNP [dm6]	A	C	3.516e^-4	0.961	UTR_3_PRIME pros DOWNSTREAM pros	TF binding site BDTNP1_TFBS_dl
2L	13808144	2L_13808144_SNP [dm3] 2L_13808144_SNP [dm6]	C	G	3.519e^-4	0.961	DOWNSTREAM adat INTRON CAH1
2R	12441969	2R_12441969_INS [dm3] 2R_16554464_INS [dm6]	TTTTG	AAAAATAACAAAA...	3.523e^-4	0.961	UPSTREAM Syn2 INTRON Syn2
2L	731934	2L_731934_SNP [dm3] 2L_731934_SNP [dm6]	C	T	3.524e^-4	0.961	INTERGENIC
2R	16910074	2R_16910074_SNP [dm3] 2R_21022569_SNP [dm6]	C	A	3.524e^-4	0.961	INTRON RIC-3
2R	17947599	2R_17947599_SNP [dm3] 2R_22060094_SNP [dm6]	A	T	3.530e^-4	0.961	UPSTREAM Snp INTRON CG13501	TF binding site BDTNP1_TFBS_dl
2L	2001170	2L_2001170_SNP [dm3] 2L_2001170_SNP [dm6]	T	G	3.531e^-4	0.961	INTRON CG33543 EXON CR43464
3R	17365832	3R_17365832_SNP [dm3] 3R_21540110_SNP [dm6]	A	T	3.532e^-4	0.961	INTERGENIC
2L	2024400	2L_2024400_SNP [dm3] 2L_2024400_SNP [dm6]	G	T	3.532e^-4	0.961	INTRON CG4238
3R	14031055	3R_14031055_SNP [dm3] 3R_18205333_SNP [dm6]	G	A	3.533e^-4	0.961	INTRON CG7985
3L	6089677	3L_6089677_SNP [dm3] 3L_6096577_SNP [dm6]	G	T	3.538e^-4	0.961	DOWNSTREAM loj INTERGENIC
2L	2001171	2L_2001171_SNP [dm3] 2L_2001171_SNP [dm6]	G	C	3.547e^-4	0.961	INTRON CG33543 EXON CR43464
3R	23416012	3R_23416012_SNP [dm3] 3R_27590290_SNP [dm6]	G	A	3.549e^-4	0.961	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	489165	2L_489165_SNP [dm3] 2L_489165_SNP [dm6]	A	T	3.552e^-4	0.961	INTRON ush	TF binding site mE1_TFBS_Trl
3L	2400875	3L_2400875_SNP [dm3] 3L_2400875_SNP [dm6]	G	A	3.560e^-4	0.961	INTRON CG45186
3R	23499249	3R_23499249_SNP [dm3] 3R_27673527_SNP [dm6]	C	T	3.567e^-4	0.961	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11174988	3L_11174988_SNP [dm3] 3L_11181888_SNP [dm6]	T	G	3.576e^-4	0.961	INTRON GlcAT-P
2L	2432142	2L_2432142_SNP [dm3] 2L_2432142_SNP [dm6]	T	G	3.578e^-4	0.961	INTRON dpp
3L	19289714	3L_19289714_SNP [dm3] 3L_19296614_SNP [dm6]	G	T	3.580e^-4	0.961	SPLICE_SITE_REGION fal UTR_5_PRIME fal INTRON fal
3L	7027401	3L_7027401_SNP [dm3] 3L_7034301_SNP [dm6]	T	C	3.583e^-4	0.961	INTRON Mp
2L	8821917	2L_8821917_SNP [dm3] 2L_8821917_SNP [dm6]	A	T	3.592e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13784838	2R_13784838_DEL [dm3] 2R_17897333_DEL [dm6]	CATTCGC	C	3.596e^-4	0.961	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7917576	X_7917576_SNP [dm3] X_8023543_SNP [dm6]	G	A	3.597e^-4	0.961	INTRON Tbh
X	21356334	X_21356334_SNP [dm3] X_21485307_SNP [dm6]	T	C	3.604e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12156257	3L_12156257_SNP [dm3] 3L_12163157_SNP [dm6]	T	G	3.607e^-4	0.961	INTRON CG9760
3R	6358111	3R_6358111_SNP [dm3] 3R_10532389_SNP [dm6]	A	G	3.618e^-4	0.961	INTRON hth
3L	5601723	3L_5601723_SNP [dm3] 3L_5608623_SNP [dm6]	G	A	3.627e^-4	0.961	UPSTREAM Eaf6 INTERGENIC
3R	26562491	3R_26562491_SNP [dm3] 3R_30736769_SNP [dm6]	A	C	3.627e^-4	0.961	INTERGENIC
3R	27147622	3R_27147622_SNP [dm3] 3R_31321900_SNP [dm6]	G	A	3.628e^-4	0.961	INTRON CG34347
2L	17555598	2L_17555598_SNP [dm3] 2L_17555598_SNP [dm6]	T	C	3.633e^-4	0.961	NON_SYNONYMOUS_CODING CG7094
2R	17770006	2R_17770006_DEL [dm3] 2R_21882501_DEL [dm6]	TTTCGT	T	3.634e^-4	0.961	UTR_5_PRIME PpN58A UPSTREAM Fili INTRON Fili
3R	21588282	3R_21588282_SNP [dm3] 3R_25762560_SNP [dm6]	A	G	3.639e^-4	0.961	UTR_5_PRIME LpR1
2L	8415700	2L_8415700_SNP [dm3] 2L_8415700_SNP [dm6]	A	T	3.642e^-4	0.961	UTR_5_PRIME Akap200 UPSTREAM Akap200 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10717502	2R_10717502_SNP [dm3] 2R_14829997_SNP [dm6]	A	G	3.647e^-4	0.961	INTERGENIC
3R	23499360	3R_23499360_SNP [dm3] 3R_27673638_SNP [dm6]	C	G	3.654e^-4	0.961	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	22628601	3R_22628601_SNP [dm3] 3R_26802879_SNP [dm6]	T	A	3.660e^-4	0.961	INTRON Tl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14469884	3R_14469884_SNP [dm3] 3R_18644162_SNP [dm6]	T	C	3.680e^-4	0.961	INTRON qin
3R	8980143	3R_8980143_SNP [dm3] 3R_13154421_SNP [dm6]	C	T	3.681e^-4	0.961	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
3R	23409877	3R_23409877_SNP [dm3] 3R_27584155_SNP [dm6]	G	A	3.683e^-4	0.961	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13318565	3L_13318565_SNP [dm3] 3L_13325465_SNP [dm6]	C	T	3.686e^-4	0.961	UPSTREAM CR44558 INTERGENIC
2R	8722155	2R_8722155_SNP [dm3] 2R_12834650_SNP [dm6]	C	T	3.688e^-4	0.961	INTERGENIC
2L	16441714	2L_16441714_SNP [dm3] 2L_16441714_SNP [dm6]	T	G	3.692e^-4	0.961	INTRON CG5888
3L	2513582	3L_2513582_SNP [dm3] 3L_2513582_SNP [dm6]	T	C	3.698e^-4	0.961	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23421192	3R_23421192_SNP [dm3] 3R_27595470_SNP [dm6]	A	T	3.718e^-4	0.961	INTRON CG5639	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1677948	2L_1677948_SNP [dm3] 2L_1677948_SNP [dm6]	A	G	3.727e^-4	0.961	INTRON chinmo
3R	10160211	3R_10160211_SNP [dm3] 3R_14334489_SNP [dm6]	A	C	3.727e^-4	0.961	INTRON NK7.1
2L	4711685	2L_4711685_SNP [dm3] 2L_4711685_SNP [dm6]	T	A	3.734e^-4	0.961	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2L	4711716	2L_4711716_SNP [dm3] 2L_4711716_SNP [dm6]	A	G	3.734e^-4	0.961	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	16907495	2R_16907495_SNP [dm3] 2R_21019990_SNP [dm6]	G	A	3.735e^-4	0.961	INTRON RIC-3
3L	3580936	3L_3580936_SNP [dm3] 3L_3580936_SNP [dm6]	C	T	3.746e^-4	0.961	INTRON Eip63E
2R	17782577	2R_17782577_INS [dm3] 2R_21895072_INS [dm6]	A	AT	3.746e^-4	0.961	INTRON Fili
3R	7637068	3R_7637068_SNP [dm3] 3R_11811346_SNP [dm6]	G	A	3.762e^-4	0.961	INTRON ClC-a
3R	26941364	3R_26941364_SNP [dm3] 3R_31115642_SNP [dm6]	C	T	3.763e^-4	0.961	INTERGENIC
2L	3430817	2L_3430817_SNP [dm3] 2L_3430817_SNP [dm6]	G	T	3.774e^-4	0.961	INTERGENIC
X	18463720	X_18463720_SNP [dm3] X_18569687_SNP [dm6]	T	G	3.782e^-4	0.961	INTRON Bx	TF binding site BDTNP1_TFBS_da
X	16904539	X_16904539_SNP [dm3] X_17010506_SNP [dm6]	G	A	3.783e^-4	0.961	INTRON CG45002
3L	10825758	3L_10825758_INS [dm3] 3L_10832658_INS [dm6]	T	TT	3.794e^-4	0.961	INTERGENIC
2L	16380499	2L_16380499_SNP [dm3] 2L_16380499_SNP [dm6]	C	A	3.806e^-4	0.961	INTERGENIC
3R	18764943	3R_18764943_SNP [dm3] 3R_22939221_SNP [dm6]	C	T	3.847e^-4	0.961	INTRON klg
3R	27573393	3R_27573393_SNP [dm3] 3R_31747671_SNP [dm6]	C	T	3.857e^-4	0.961	UTR_5_PRIME CG1910 UPSTREAM CG1910 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	20603855	2R_20603855_DEL [dm3] 2R_24716332_DEL [dm6]	GC	G	3.858e^-4	0.961	INTRON Mid1
2L	18927776	2L_18927776_SNP [dm3] 2L_18927776_SNP [dm6]	C	A	3.873e^-4	0.961	INTRON ssp3	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Kr
3L	19477563	3L_19477563_SNP [dm3] 3L_19484463_SNP [dm6]	C	G	3.878e^-4	0.961	SYNONYMOUS_CODING brv1	TF binding site mE1_TFBS_cad
2L	6771587	2L_6771587_SNP [dm3] 2L_6771587_SNP [dm6]	T	A	3.879e^-4	0.961	UPSTREAM CG11321 INTRON CG11321
2L	12118707	2L_12118707_SNP [dm3] 2L_12118707_SNP [dm6]	G	T	3.885e^-4	0.961	INTRON CG17211	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16651680	2L_16651680_SNP [dm3] 2L_16651680_SNP [dm6]	C	G	3.888e^-4	0.961	INTRON CG42389
2L	16112346	2L_16112346_SNP [dm3] 2L_16112346_SNP [dm6]	A	G	3.901e^-4	0.961	INTERGENIC
2R	8410853	2R_8410853_SNP [dm3] 2R_12523348_SNP [dm6]	T	A	3.909e^-4	0.961	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5785908	3L_5785908_SNP [dm3] 3L_5792808_SNP [dm6]	C	T	3.909e^-4	0.961	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6659436	2R_6659436_SNP [dm3] 2R_10771931_SNP [dm6]	A	G	3.910e^-4	0.961	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11923035	3R_11923035_SNP [dm3] 3R_16097313_SNP [dm6]	A	G	3.919e^-4	0.961	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	12091484	X_12091484_SNP [dm3] X_12197451_SNP [dm6]	A	C	3.920e^-4	0.961	INTRON Ten-a
2R	12330358	2R_12330358_SNP [dm3] 2R_16442853_SNP [dm6]	T	C	3.920e^-4	0.961	UPSTREAM CG4409 INTERGENIC
3R	23251036	3R_23251036_SNP [dm3] 3R_27425314_SNP [dm6]	T	C	3.921e^-4	0.961	INTRON side
2L	11377996	2L_11377996_SNP [dm3] 2L_11377996_SNP [dm6]	G	A	3.925e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	9960614	3L_9960614_SNP [dm3] 3L_9967514_SNP [dm6]	C	T	3.926e^-4	0.961	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site mE1_TFBS_cad
2L	8484177	2L_8484177_SNP [dm3] 2L_8484177_SNP [dm6]	T	C	3.933e^-4	0.961	INTRON d	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27133512	3R_27133512_SNP [dm3] 3R_31307790_SNP [dm6]	C	G	3.949e^-4	0.961	INTERGENIC
3R	25774476	3R_25774476_SNP [dm3] 3R_29948754_SNP [dm6]	A	T	3.951e^-4	0.961	DOWNSTREAM CG15523 INTERGENIC
X	9329169	X_9329169_SNP [dm3] X_9435136_SNP [dm6]	A	G	3.957e^-4	0.961	INTRON mgl
3R	23524097	3R_23524097_SNP [dm3] 3R_27698375_SNP [dm6]	C	T	3.963e^-4	0.961	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8244933	3L_8244933_SNP [dm3] 3L_8251833_SNP [dm6]	C	T	3.965e^-4	0.961	INTRON Dscam4
2R	17855381	2R_17855381_SNP [dm3] 2R_21967876_SNP [dm6]	C	G	3.968e^-4	0.961	SYNONYMOUS_CODING ppk9
2L	7378801	2L_7378801_SNP [dm3] 2L_7378801_SNP [dm6]	A	C	3.980e^-4	0.961	SYNONYMOUS_CODING ninaC
2R	12442040	2R_12442040_SNP [dm3] 2R_16554535_SNP [dm6]	C	T	3.982e^-4	0.961	UPSTREAM Syn2 INTRON Syn2
3R	25736687	3R_25736687_SNP [dm3] 3R_29910965_SNP [dm6]	C	A	3.984e^-4	0.961	SYNONYMOUS_CODING CG31036	TF binding site mE1_TFBS_cad
2R	15381468	2R_15381468_SNP [dm3] 2R_19493963_SNP [dm6]	T	A	3.985e^-4	0.961	UTR_3_PRIME Rep DOWNSTREAM hpo
2R	12739319	2R_12739319_SNP [dm3] 2R_16851814_SNP [dm6]	T	A	3.990e^-4	0.961	SYNONYMOUS_CODING IntS8	TF binding site mE1_TFBS_cad
3L	17099202	3L_17099202_SNP [dm3] 3L_17106102_SNP [dm6]	A	G	3.996e^-4	0.961	INTRON Rbp6
3L	7701083	3L_7701083_SNP [dm3] 3L_7707983_SNP [dm6]	T	A	3.997e^-4	0.961	SYNONYMOUS_CODING Ank2 DOWNSTREAM Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11921623	3R_11921623_SNP [dm3] 3R_16095901_SNP [dm6]	G	T	4.020e^-4	0.961	SYNONYMOUS_CODING Mhcl
2R	4873591	2R_4873591_SNP [dm3] 2R_8986086_SNP [dm6]	G	C	4.026e^-4	0.961	UPSTREAM CG8213 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3352229	3L_3352229_SNP [dm3] 3L_3352229_SNP [dm6]	A	G	4.027e^-4	0.961	INTRON kst
2L	20781947	2L_20781947_SNP [dm3] 2L_20781947_SNP [dm6]	T	G	4.035e^-4	0.961	SYNONYMOUS_CODING cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8664204	2R_8664204_SNP [dm3] 2R_12776699_SNP [dm6]	C	T	4.036e^-4	0.961	UPSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	4531364	2R_4531364_SNP [dm3] 2R_8643859_SNP [dm6]	C	T	4.046e^-4	0.961	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7545885	3L_7545885_SNP [dm3] 3L_7552785_SNP [dm6]	G	A	4.052e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9442384	2L_9442384_SNP [dm3] 2L_9442384_SNP [dm6]	A	T	4.053e^-4	0.961	INTRON numb
3R	23416417	3R_23416417_SNP [dm3] 3R_27590695_SNP [dm6]	G	A	4.062e^-4	0.961	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6813167	3L_6813167_SNP [dm3] 3L_6820067_SNP [dm6]	G	A	4.063e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	7168406	3R_7168406_SNP [dm3] 3R_11342684_SNP [dm6]	C	T	4.063e^-4	0.961	INTRON pros
3L	9563687	3L_9563687_SNP [dm3] 3L_9570587_SNP [dm6]	G	A	4.073e^-4	0.961	INTRON CG42673
4	165631	4_165631_SNP [dm3] 4_145005_SNP [dm6]	A	T	4.082e^-4	0.961	INTERGENIC	transposable element FlyBase
2R	10581646	2R_10581646_SNP [dm3] 2R_14694141_SNP [dm6]	G	A	4.085e^-4	0.961	INTRON mspo
2R	19772496	2R_19772496_SNP [dm3] 2R_23884973_SNP [dm6]	A	T	4.093e^-4	0.961	UPSTREAM PHDP INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19772497	2R_19772497_SNP [dm3] 2R_23884974_SNP [dm6]	C	A	4.093e^-4	0.961	UPSTREAM PHDP INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1727486	2L_1727486_SNP [dm3] 2L_1727486_SNP [dm6]	C	G	4.096e^-4	0.961	UTR_5_PRIME Eno INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24579936	3R_24579936_SNP [dm3] 3R_28754214_SNP [dm6]	G	A	4.103e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9399978	3R_9399978_SNP [dm3] 3R_13574256_SNP [dm6]	C	T	4.108e^-4	0.961	UPSTREAM CR43848 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16907596	2R_16907596_SNP [dm3] 2R_21020091_SNP [dm6]	G	A	4.108e^-4	0.961	SYNONYMOUS_CODING RIC-3
3L	16425972	3L_16425972_SNP [dm3] 3L_16432872_SNP [dm6]	C	A	4.125e^-4	0.961	INTRON CG33158 & 1 other
3L	8717871	3L_8717871_SNP [dm3] 3L_8724771_SNP [dm6]	A	G	4.128e^-4	0.961	SYNONYMOUS_CODING CG6511 DOWNSTREAM CG43965
2R	12739313	2R_12739313_SNP [dm3] 2R_16851808_SNP [dm6]	A	G	4.133e^-4	0.961	SYNONYMOUS_CODING IntS8	TF binding site mE1_TFBS_cad
3L	2187049	3L_2187049_SNP [dm3] 3L_2187049_SNP [dm6]	T	C	4.138e^-4	0.961	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25151341	3R_25151341_SNP [dm3] 3R_29325619_SNP [dm6]	A	T	4.139e^-4	0.961	INTERGENIC
X	18796075	X_18796075_SNP [dm3] X_18902042_SNP [dm6]	A	G	4.141e^-4	0.961	INTRON CG7378
2L	1190156	2L_1190156_SNP [dm3] 2L_1190156_SNP [dm6]	C	T	4.150e^-4	0.961	INTRON CG5001
X	11952161	X_11952161_SNP [dm3] X_12058128_SNP [dm6]	A	T	4.164e^-4	0.961	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo
3R	16224552	3R_16224552_INS [dm3] 3R_20398830_INS [dm6]	G	GCCAATTACGAGCCCAAGAG...	4.178e^-4	0.961	INTRON Gfrl
2L	4770972	2L_4770972_SNP [dm3] 2L_4770972_SNP [dm6]	C	T	4.178e^-4	0.961	INTRON CG15630
3L	1122959	3L_1122959_SNP [dm3] 3L_1122959_SNP [dm6]	G	A	4.179e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9393499	3R_9393499_SNP [dm3] 3R_13567777_SNP [dm6]	T	C	4.183e^-4	0.961	INTERGENIC
3R	25816292	3R_25816292_SNP [dm3] 3R_29990570_SNP [dm6]	C	T	4.184e^-4	0.961	UTR_3_PRIME CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad
3L	10253399	3L_10253399_SNP [dm3] 3L_10260299_SNP [dm6]	A	G	4.184e^-4	0.961	INTERGENIC
3R	18232766	3R_18232766_SNP [dm3] 3R_22407044_SNP [dm6]	C	T	4.188e^-4	0.961	SYNONYMOUS_CODING CG13855
2L	16452780	2L_16452780_SNP [dm3] 2L_16452780_SNP [dm6]	C	T	4.190e^-4	0.961	SYNONYMOUS_CODING Idgf3	regulatory region REDfly_CRMs
3L	8908255	3L_8908255_SNP [dm3] 3L_8915155_SNP [dm6]	T	A	4.195e^-4	0.961	UPSTREAM CR43970 INTRON Tsp66E
2R	5654709	2R_5654709_SNP [dm3] 2R_9767204_SNP [dm6]	C	A	4.205e^-4	0.961	SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14886572	3R_14886572_SNP [dm3] 3R_19060850_SNP [dm6]	C	G	4.209e^-4	0.961	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	22842303	3R_22842303_SNP [dm3] 3R_27016581_SNP [dm6]	T	C	4.209e^-4	0.961	DOWNSTREAM CG17192 INTRON RYa-R
X	8802452	X_8802452_DEL [dm3] X_8908419_DEL [dm6]	GA	G	4.216e^-4	0.961	INTRON rdgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	8802455	X_8802455_DEL [dm3] X_8908422_DEL [dm6]	AG	A	4.216e^-4	0.961	INTRON rdgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	13244447	3L_13244447_SNP [dm3] 3L_13251347_SNP [dm6]	T	A	4.221e^-4	0.961	INTRON caps
3R	19904836	3R_19904836_SNP [dm3] 3R_24079114_SNP [dm6]	G	T	4.223e^-4	0.961	INTRON 4EHP
2R	15880288	2R_15880288_SNP [dm3] 2R_19992783_SNP [dm6]	T	C	4.234e^-4	0.961	INTERGENIC
3R	27149745	3R_27149745_SNP [dm3] 3R_31324023_SNP [dm6]	G	A	4.236e^-4	0.961	INTRON CG34347
2R	10828013	2R_10828013_SNP [dm3] 2R_14940508_SNP [dm6]	A	G	4.242e^-4	0.961	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
3L	13776325	3L_13776325_SNP [dm3] 3L_13783225_SNP [dm6]	A	T	4.246e^-4	0.961	INTRON bru-3
3L	9476314	3L_9476314_SNP [dm3] 3L_9483214_SNP [dm6]	G	A	4.247e^-4	0.961	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8577684	3L_8577684_SNP [dm3] 3L_8584584_SNP [dm6]	T	G	4.252e^-4	0.961	UPSTREAM CG43078 INTRON CG43078
3R	16198324	3R_16198324_SNP [dm3] 3R_20372602_SNP [dm6]	C	T	4.265e^-4	0.961	INTERGENIC
2L	489376	2L_489376_SNP [dm3] 2L_489376_SNP [dm6]	C	T	4.269e^-4	0.961	INTRON ush
3R	25680067	3R_25680067_SNP [dm3] 3R_29854345_SNP [dm6]	T	C	4.271e^-4	0.961	UTR_3_PRIME Cad99C DOWNSTREAM dgt1
3R	23252232	3R_23252232_SNP [dm3] 3R_27426510_SNP [dm6]	G	A	4.278e^-4	0.961	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3396532	2L_3396532_SNP [dm3] 2L_3396532_SNP [dm6]	G	A	4.279e^-4	0.961	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23997972	3R_23997972_SNP [dm3] 3R_28172250_SNP [dm6]	C	A	4.287e^-4	0.961	INTRON CG34354
3R	8980773	3R_8980773_SNP [dm3] 3R_13155051_SNP [dm6]	C	T	4.291e^-4	0.961	INTRON timeout & 2 others
3R	23407667	3R_23407667_SNP [dm3] 3R_27581945_SNP [dm6]	G	T	4.293e^-4	0.961	UTR_5_PRIME wdb UPSTREAM wdb & 1 other INTRON wdb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8182074	2R_8182074_SNP [dm3] 2R_12294569_SNP [dm6]	C	A	4.295e^-4	0.961	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6527023	2R_6527023_SNP [dm3] 2R_10639518_SNP [dm6]	T	C	4.327e^-4	0.961	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
X	20743884	X_20743884_SNP [dm3] X_20872857_SNP [dm6]	A	G	4.330e^-4	0.961	INTRON shakB
3R	19205703	3R_19205703_SNP [dm3] 3R_23379981_SNP [dm6]	A	C	4.335e^-4	0.961	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15713587	2R_15713587_SNP [dm3] 2R_19826082_SNP [dm6]	C	G	4.345e^-4	0.961	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23537633	3R_23537633_SNP [dm3] 3R_27711911_SNP [dm6]	C	G	4.345e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	2449034	2R_2449034_SNP [dm3] 2R_6561529_SNP [dm6]	A	G	4.347e^-4	0.961	INTRON jing	TF binding site mE1_TFBS_chinmo
2R	17782520	2R_17782520_SNP [dm3] 2R_21895015_SNP [dm6]	C	A	4.364e^-4	0.961	INTRON Fili
3L	13313614	3L_13313614_SNP [dm3] 3L_13320514_SNP [dm6]	A	G	4.365e^-4	0.961	INTERGENIC
3L	7784513	3L_7784513_SNP [dm3] 3L_7791413_SNP [dm6]	A	G	4.371e^-4	0.961	INTRON CG32369
2L	11212477	2L_11212477_SNP [dm3] 2L_11212477_SNP [dm6]	T	C	4.379e^-4	0.961	INTRON ab	TF binding site mE1_TFBS_HSA
3L	5521140	3L_5521140_SNP [dm3] 3L_5528040_SNP [dm6]	G	C	4.381e^-4	0.961	INTRON Lkr
2L	3723694	2L_3723694_SNP [dm3] 2L_3723694_SNP [dm6]	C	G	4.384e^-4	0.961	SYNONYMOUS_CODING Shaw
3R	23143138	3R_23143138_SNP [dm3] 3R_27317416_SNP [dm6]	T	A	4.391e^-4	0.961	UPSTREAM CR44287 INTRON CG3339	TF binding site mE1_TFBS_chinmo
3R	26689603	3R_26689603_SNP [dm3] 3R_30863881_SNP [dm6]	A	G	4.398e^-4	0.961	INTERGENIC
2R	8871655	2R_8871655_SNP [dm3] 2R_12984150_SNP [dm6]	G	C	4.399e^-4	0.961	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	20896568	3L_20896568_SNP [dm3] 3L_20903468_SNP [dm6]	C	A	4.414e^-4	0.961	DOWNSTREAM CR45383 INTERGENIC
2L	3938510	2L_3938510_INS [dm3] 2L_3938510_INS [dm6]	T	TT	4.419e^-4	0.961	INTRON fred
X	19178939	X_19178939_SNP [dm3] X_19284906_SNP [dm6]	A	T	4.423e^-4	0.961	UPSTREAM CG8034 INTRON CG8034
3R	20126563	3R_20126563_SNP [dm3] 3R_24300841_SNP [dm6]	G	C	4.424e^-4	0.961	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	18711619	3R_18711619_SNP [dm3] 3R_22885897_SNP [dm6]	C	A	4.434e^-4	0.961	INTERGENIC
2R	6537291	2R_6537291_SNP [dm3] 2R_10649786_SNP [dm6]	G	T	4.435e^-4	0.961	UTR_3_PRIME CG12934 DOWNSTREAM CG12934
2R	4644955	2R_4644955_SNP [dm3] 2R_8757450_SNP [dm6]	G	A	4.439e^-4	0.961	NON_SYNONYMOUS_CODING CG8740	TF binding site mE1_TFBS_chinmo
3R	18498834	3R_18498834_INS [dm3] 3R_22673112_INS [dm6]	A	ATA	4.440e^-4	0.961	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9452677	2L_9452677_SNP [dm3] 2L_9452677_SNP [dm6]	G	A	4.453e^-4	0.961	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	23186638	3R_23186638_SNP [dm3] 3R_27360916_SNP [dm6]	A	C	4.454e^-4	0.961	INTRON CG42534
2L	8415583	2L_8415583_SNP [dm3] 2L_8415583_SNP [dm6]	T	A	4.456e^-4	0.961	UPSTREAM Akap200 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9458956	2R_9458956_SNP [dm3] 2R_13571451_SNP [dm6]	T	A	4.459e^-4	0.961	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	17315310	2R_17315310_SNP [dm3] 2R_21427805_SNP [dm6]	G	T	4.459e^-4	0.961	INTRON Sdc
2L	13508576	2L_13508576_SNP [dm3] 2L_13508576_SNP [dm6]	A	G	4.465e^-4	0.961	INTRON B4	TF binding site mE1_TFBS_cad
2L	19120375	2L_19120375_SNP [dm3] 2L_19120375_SNP [dm6]	G	T	4.469e^-4	0.961	UPSTREAM Ddc DOWNSTREAM l_2_37Cc INTERGENIC	regulatory region REDfly_CRMs
2R	2088041	2R_2088041_INS [dm3] 2R_6200536_INS [dm6]	C	CCATGGC	4.485e^-4	0.961	UPSTREAM CG8335 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16186763	3L_16186763_SNP [dm3] 3L_16193663_SNP [dm6]	A	T	4.495e^-4	0.961	INTERGENIC
2L	16571183	2L_16571183_SNP [dm3] 2L_16571183_SNP [dm6]	A	T	4.506e^-4	0.961	INTRON CG42389
X	18463722	X_18463722_SNP [dm3] X_18569689_SNP [dm6]	A	T	4.516e^-4	0.961	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	3723546	2L_3723546_SNP [dm3] 2L_3723546_SNP [dm6]	T	A	4.520e^-4	0.961	INTRON Shaw
3R	23848262	3R_23848262_SNP [dm3] 3R_28022540_SNP [dm6]	A	T	4.522e^-4	0.961	INTERGENIC
3R	6531710	3R_6531710_SNP [dm3] 3R_10705988_SNP [dm6]	C	T	4.528e^-4	0.961	SYNONYMOUS_CODING CG31467 UPSTREAM CG31391 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7423665	X_7423665_SNP [dm3] X_7529632_SNP [dm6]	C	T	4.531e^-4	0.961	DOWNSTREAM CG43138 INTRON CG32719
3R	23404811	3R_23404811_SNP [dm3] 3R_27579089_SNP [dm6]	T	G	4.535e^-4	0.961	INTRON wdb
3R	14822454	3R_14822454_SNP [dm3] 3R_18996732_SNP [dm6]	T	C	4.536e^-4	0.961	INTRON gukh	TF binding site mE1_TFBS_cad
2R	9456801	2R_9456801_SNP [dm3] 2R_13569296_SNP [dm6]	C	T	4.542e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_zfh1
3L	15817022	3L_15817022_SNP [dm3] 3L_15823922_SNP [dm6]	G	A	4.554e^-4	0.961	SYNONYMOUS_CODING Dcp2 UTR_5_PRIME Dcp2	TF binding site BDTNP1_TFBS_dl
2R	6969947	2R_6969947_SNP [dm3] 2R_11082442_SNP [dm6]	T	C	4.554e^-4	0.961	INTRON luna
2R	3519724	2R_3519724_SNP [dm3] 2R_7632219_SNP [dm6]	C	G	4.556e^-4	0.961	UPSTREAM CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	11952344	X_11952344_SNP [dm3] X_12058311_SNP [dm6]	G	T	4.557e^-4	0.961	INTRON CR43960 & 1 other
X	19376158	X_19376158_SNP [dm3] X_19482125_SNP [dm6]	C	T	4.579e^-4	0.961	SYNONYMOUS_CODING Nat1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	15968207	2R_15968207_SNP [dm3] 2R_20080702_SNP [dm6]	C	A	4.585e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	9327263	X_9327263_SNP [dm3] X_9433230_SNP [dm6]	T	A	4.588e^-4	0.961	INTRON mgl
X	12039706	X_12039706_SNP [dm3] X_12145673_SNP [dm6]	C	A	4.595e^-4	0.961	INTRON Ten-a
3L	16186890	3L_16186890_SNP [dm3] 3L_16193790_SNP [dm6]	T	A	4.602e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26434472	3R_26434472_SNP [dm3] 3R_30608750_SNP [dm6]	G	A	4.618e^-4	0.961	UTR_3_PRIME CG31016 DOWNSTREAM CG31016
4	262364	4_262364_SNP [dm3] 4_241738_SNP [dm6]	G	A	4.621e^-4	0.961	DOWNSTREAM CG1674 INTRON CG1674
2L	10822032	2L_10822032_SNP [dm3] 2L_10822032_SNP [dm6]	A	T	4.622e^-4	0.961	DOWNSTREAM CG17134 INTRON Nos
2R	5816172	2R_5816172_SNP [dm3] 2R_9928667_SNP [dm6]	A	G	4.625e^-4	0.961	INTRON Mef2
2L	665014	2L_665014_SNP [dm3] 2L_665014_SNP [dm6]	G	A	4.626e^-4	0.961	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14926362	3L_14926362_SNP [dm3] 3L_14933262_SNP [dm6]	G	A	4.627e^-4	0.961	INTRON DCX-EMAP
3L	11118795	3L_11118795_SNP [dm3] 3L_11125695_SNP [dm6]	C	T	4.642e^-4	0.961	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	23459339	3R_23459339_SNP [dm3] 3R_27633617_SNP [dm6]	T	C	4.651e^-4	0.961	INTRON Tusp
X	2897814	X_2897814_SNP [dm3] X_3003781_SNP [dm6]	A	G	4.652e^-4	0.961	INTRON kirre
3R	9641623	3R_9641623_SNP [dm3] 3R_13815901_SNP [dm6]	T	G	4.652e^-4	0.961	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24562100	3R_24562100_DEL [dm3] 3R_28736378_DEL [dm6]	GG	G	4.653e^-4	0.961	DOWNSTREAM AstA-R2 INTERGENIC
3R	24046135	3R_24046135_SNP [dm3] 3R_28220413_SNP [dm6]	A	G	4.670e^-4	0.961	INTRON CG34354	insulator Insulator_Class_II.mE01
3R	23499715	3R_23499715_SNP [dm3] 3R_27673993_SNP [dm6]	C	T	4.672e^-4	0.961	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
2R	4874425	2R_4874425_SNP [dm3] 2R_8986920_SNP [dm6]	A	G	4.693e^-4	0.961	INTERGENIC
3R	9641652	3R_9641652_SNP [dm3] 3R_13815930_SNP [dm6]	A	T	4.694e^-4	0.961	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5601703	3L_5601703_DEL [dm3] 3L_5608603_DEL [dm6]	GAAATC	G	4.702e^-4	0.961	UPSTREAM Eaf6 INTERGENIC
2R	9313009	2R_9313009_SNP [dm3] 2R_13425504_SNP [dm6]	C	T	4.704e^-4	0.961	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15968192	2R_15968192_SNP [dm3] 2R_20080687_SNP [dm6]	C	T	4.704e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23186740	3R_23186740_SNP [dm3] 3R_27361018_SNP [dm6]	T	C	4.707e^-4	0.961	INTRON CG42534
3R	14487232	3R_14487232_SNP [dm3] 3R_18661510_SNP [dm6]	G	A	4.710e^-4	0.961	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
2L	20715228	2L_20715228_SNP [dm3] 2L_20715228_SNP [dm6]	C	A	4.711e^-4	0.961	UPSTREAM Hr38 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	20749754	2L_20749754_SNP [dm3] 2L_20749754_SNP [dm6]	C	T	4.713e^-4	0.961	UTR_3_PRIME Fs_2_Ket	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14086341	2R_14086341_SNP [dm3] 2R_18198836_SNP [dm6]	A	G	4.724e^-4	0.961	INTERGENIC
3R	13289522	3R_13289522_SNP [dm3] 3R_17463800_SNP [dm6]	T	A	4.728e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12442455	2R_12442455_SNP [dm3] 2R_16554950_SNP [dm6]	A	C	4.728e^-4	0.961	INTRON Syn2
X	16368018	X_16368018_SNP [dm3] X_16473985_SNP [dm6]	T	G	4.750e^-4	0.961	INTRON para
2R	17260264	2R_17260264_SNP [dm3] 2R_21372759_SNP [dm6]	G	A	4.751e^-4	0.961	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1415734	3L_1415734_SNP [dm3] 3L_1415734_SNP [dm6]	G	C	4.754e^-4	0.961	UPSTREAM FucTD INTRON Ptp61F
2R	20135773	2R_20135773_SNP [dm3] 2R_24248250_SNP [dm6]	T	A	4.754e^-4	0.961	DOWNSTREAM Ir60a INTRON nord
2R	14355724	2R_14355724_SNP [dm3] 2R_18468219_SNP [dm6]	C	T	4.760e^-4	0.961	INTRON CG30116
2R	10581371	2R_10581371_SNP [dm3] 2R_14693866_SNP [dm6]	G	T	4.768e^-4	0.961	INTRON mspo
3R	24046107	3R_24046107_SNP [dm3] 3R_28220385_SNP [dm6]	A	G	4.771e^-4	0.961	INTRON CG34354
3R	24046127	3R_24046127_SNP [dm3] 3R_28220405_SNP [dm6]	A	T	4.771e^-4	0.961	INTRON CG34354
3R	23007589	3R_23007589_SNP [dm3] 3R_27181867_SNP [dm6]	C	T	4.784e^-4	0.961	INTRON Ser
3R	27365101	3R_27365101_SNP [dm3] 3R_31539379_SNP [dm6]	A	G	4.790e^-4	0.961	INTERGENIC
2R	15021746	2R_15021746_SNP [dm3] 2R_19134241_SNP [dm6]	A	G	4.797e^-4	0.961	SYNONYMOUS_CODING CG15118 UTR_3_PRIME CG15118 DOWNSTREAM botv	TF binding site mE1_TFBS_chinmo
X	11952342	X_11952342_SNP [dm3] X_12058309_SNP [dm6]	C	T	4.806e^-4	0.961	INTRON CR43960 & 1 other
3R	9641644	3R_9641644_INS [dm3] 3R_13815922_INS [dm6]	A	AT	4.811e^-4	0.961	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16801950	3L_16801950_SNP [dm3] 3L_16808850_SNP [dm6]	T	G	4.829e^-4	0.961	SYNONYMOUS_CODING nudC DOWNSTREAM CG13024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	11006132	3L_11006132_DEL [dm3] 3L_11013032_DEL [dm6]	AA	A	4.830e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24046191	3R_24046191_SNP [dm3] 3R_28220469_SNP [dm6]	G	A	4.862e^-4	0.961	INTRON CG34354
2L	3987686	2L_3987686_SNP [dm3] 2L_3987686_SNP [dm6]	G	T	4.870e^-4	0.961	INTRON fred
3R	15409689	3R_15409689_SNP [dm3] 3R_19583967_SNP [dm6]	T	G	4.872e^-4	0.961	INTRON Dys
X	14011995	X_14011995_SNP [dm3] X_14117962_SNP [dm6]	G	A	4.876e^-4	0.961	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10575333	2L_10575333_SNP [dm3] 2L_10575333_SNP [dm6]	T	A	4.878e^-4	0.961	DOWNSTREAM w-cup INTRON Trim9
2R	17782580	2R_17782580_SNP [dm3] 2R_21895075_SNP [dm6]	T	A	4.887e^-4	0.961	INTRON Fili
3L	12778731	3L_12778731_SNP [dm3] 3L_12785631_SNP [dm6]	G	C	4.899e^-4	0.961	INTRON Atg1	TF binding site mE1_TFBS_cad
3L	10637652	3L_10637652_SNP [dm3] 3L_10644552_SNP [dm6]	G	T	4.904e^-4	0.961	UTR_3_PRIME CG14153 INTRON CG32066
3L	8717847	3L_8717847_SNP [dm3] 3L_8724747_SNP [dm6]	A	G	4.904e^-4	0.961	SYNONYMOUS_CODING CG6511 DOWNSTREAM CG43965
2L	17615322	2L_17615322_SNP [dm3] 2L_17615322_SNP [dm6]	C	T	4.907e^-4	0.961	INTERGENIC
3L	11581556	3L_11581556_SNP [dm3] 3L_11588456_SNP [dm6]	G	A	4.921e^-4	0.961	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9402555	3R_9402555_SNP [dm3] 3R_13576833_SNP [dm6]	A	G	4.923e^-4	0.961	INTERGENIC
3R	27532922	3R_27532922_SNP [dm3] 3R_31707200_SNP [dm6]	T	C	4.935e^-4	0.961	DOWNSTREAM CG42693 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23499835	3R_23499835_SNP [dm3] 3R_27674113_SNP [dm6]	G	C	4.941e^-4	0.961	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
X	4796080	X_4796080_SNP [dm3] X_4902047_SNP [dm6]	A	G	4.954e^-4	0.961	INTRON CG42594
2L	18927777	2L_18927777_SNP [dm3] 2L_18927777_SNP [dm6]	C	A	4.964e^-4	0.961	INTRON ssp3	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Kr
3R	18773592	3R_18773592_SNP [dm3] 3R_22947870_SNP [dm6]	C	G	4.977e^-4	0.961	INTRON klg	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16014972	3R_16014972_SNP [dm3] 3R_20189250_SNP [dm6]	G	T	4.982e^-4	0.961	INTERGENIC
2L	16260432	2L_16260432_SNP [dm3] 2L_16260432_SNP [dm6]	C	T	4.990e^-4	0.961	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
2R	20130937	2R_20130937_SNP [dm3] 2R_24243414_SNP [dm6]	C	T	4.991e^-4	0.961	START_GAINED nord UTR_5_PRIME nord	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22754249	3R_22754249_SNP [dm3] 3R_26928527_SNP [dm6]	C	T	5.005e^-4	0.961	INTRON sda
3R	5730289	3R_5730289_SNP [dm3] 3R_9904567_SNP [dm6]	G	A	5.011e^-4	0.961	INTRON Glut4EF
3R	23142959	3R_23142959_SNP [dm3] 3R_27317237_SNP [dm6]	C	G	5.013e^-4	0.961	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	10687939	2L_10687939_SNP [dm3] 2L_10687939_SNP [dm6]	A	T	5.013e^-4	0.961	UPSTREAM CG7296 DOWNSTREAM CG7294 INTERGENIC
3L	16059687	3L_16059687_SNP [dm3] 3L_16066587_SNP [dm6]	T	A	5.013e^-4	0.961	INTRON Mbs
3L	14501918	3L_14501918_SNP [dm3] 3L_14508818_SNP [dm6]	C	T	5.019e^-4	0.961	SYNONYMOUS_CODING bbg
2R	16027949	2R_16027949_SNP [dm3] 2R_20140444_SNP [dm6]	A	T	5.021e^-4	0.961	INTERGENIC
X	4755765	X_4755765_SNP [dm3] X_4861732_SNP [dm6]	T	C	5.028e^-4	0.961	INTRON CG42594
3R	5727198	3R_5727198_SNP [dm3] 3R_9901476_SNP [dm6]	T	A	5.029e^-4	0.961	INTRON Glut4EF
3R	27584102	3R_27584102_SNP [dm3] 3R_31758380_SNP [dm6]	G	A	5.033e^-4	0.961	START_GAINED CG2187 UTR_5_PRIME CG2187 UPSTREAM CR44263 & 1 other
2L	16361115	2L_16361115_SNP [dm3] 2L_16361115_SNP [dm6]	T	G	5.039e^-4	0.961	INTERGENIC
2R	8979439	2R_8979439_SNP [dm3] 2R_13091934_SNP [dm6]	G	A	5.062e^-4	0.961	INTERGENIC
3L	7871370	3L_7871370_SNP [dm3] 3L_7878270_SNP [dm6]	C	G	5.063e^-4	0.961	INTRON CG32365
3L	2124925	3L_2124925_SNP [dm3] 3L_2124925_SNP [dm6]	G	A	5.065e^-4	0.961	INTRON zormin
2R	13088770	2R_13088770_SNP [dm3] 2R_17201265_SNP [dm6]	T	C	5.065e^-4	0.961	INTERGENIC
3R	14767524	3R_14767524_SNP [dm3] 3R_18941802_SNP [dm6]	G	A	5.065e^-4	0.961	INTRON CG42613	TF binding site mE1_TFBS_chinmo
3R	25319631	3R_25319631_SNP [dm3] 3R_29493909_SNP [dm6]	G	C	5.066e^-4	0.961	NON_SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	338386	3R_338386_SNP [dm3] 3R_4512664_SNP [dm6]	A	G	5.095e^-4	0.961	INTRON CG34357
3R	25510662	3R_25510662_SNP [dm3] 3R_29684940_SNP [dm6]	T	C	5.113e^-4	0.961	SYNONYMOUS_CODING Gycalpha99B DOWNSTREAM Obp99c	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17198714	2L_17198714_SNP [dm3] 2L_17198714_SNP [dm6]	T	C	5.114e^-4	0.961	INTRON beat-IIIc	TF binding site mE1_TFBS_zfh1
3R	18470514	3R_18470514_SNP [dm3] 3R_22644792_SNP [dm6]	G	A	5.121e^-4	0.961	INTRON CG45058
2L	9944864	2L_9944864_SNP [dm3] 2L_9944864_SNP [dm6]	C	T	5.122e^-4	0.961	INTRON CG5853
3R	18499519	3R_18499519_SNP [dm3] 3R_22673797_SNP [dm6]	G	A	5.123e^-4	0.961	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7121650	X_7121650_INS [dm3] X_7227617_INS [dm6]	A	AGAAA	5.126e^-4	0.961	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25875920	3R_25875920_INS [dm3] 3R_30050198_INS [dm6]	C	CT	5.126e^-4	0.961	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18829698	3L_18829698_SNP [dm3] 3L_18836598_SNP [dm6]	A	T	5.129e^-4	0.961	INTRON Indy	TF binding site mE1_TFBS_zfh1
3R	27536767	3R_27536767_SNP [dm3] 3R_31711045_SNP [dm6]	G	A	5.130e^-4	0.961	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	3987670	2L_3987670_SNP [dm3] 2L_3987670_SNP [dm6]	G	A	5.130e^-4	0.961	INTRON fred
2R	5655515	2R_5655515_SNP [dm3] 2R_9768010_SNP [dm6]	C	T	5.131e^-4	0.961	DOWNSTREAM CR44205 INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5615949	2L_5615949_SNP [dm3] 2L_5615949_SNP [dm6]	G	A	5.135e^-4	0.961	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	1035261	2L_1035261_SNP [dm3] 2L_1035261_SNP [dm6]	C	G	5.146e^-4	0.961	UPSTREAM IA-2 INTRON IA-2
2R	19687146	2R_19687146_SNP [dm3] 2R_23799623_SNP [dm6]	G	A	5.160e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3943675	3L_3943675_SNP [dm3] 3L_3943675_SNP [dm6]	G	T	5.161e^-4	0.961	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	16531915	2R_16531915_SNP [dm3] 2R_20644410_SNP [dm6]	G	A	5.167e^-4	0.961	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	3938508	2L_3938508_SNP [dm3] 2L_3938508_SNP [dm6]	A	T	5.169e^-4	0.961	INTRON fred
2R	9458953	2R_9458953_SNP [dm3] 2R_13571448_SNP [dm6]	T	A	5.169e^-4	0.961	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2L	8758476	2L_8758476_SNP [dm3] 2L_8758476_SNP [dm6]	G	A	5.172e^-4	0.961	INTERGENIC
X	7423654	X_7423654_SNP [dm3] X_7529621_SNP [dm6]	G	A	5.185e^-4	0.961	DOWNSTREAM CG43138 INTRON CG32719
3R	27529353	3R_27529353_DEL [dm3] 3R_31703631_DEL [dm6]	ATA	A	5.198e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	18524511	3R_18524511_SNP [dm3] 3R_22698789_SNP [dm6]	T	C	5.207e^-4	0.961	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11192053	2L_11192053_SNP [dm3] 2L_11192053_SNP [dm6]	A	T	5.218e^-4	0.961	INTRON Ca-beta
2R	4451909	2R_4451909_SNP [dm3] 2R_8564404_SNP [dm6]	A	G	5.230e^-4	0.961	NON_SYNONYMOUS_CODING Cyp6a14
3R	18525854	3R_18525854_DEL [dm3] 3R_22700132_DEL [dm6]	AGAGATTACCGTCAGATA...	A	5.250e^-4	0.961	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3L	12144828	3L_12144828_SNP [dm3] 3L_12151728_SNP [dm6]	T	C	5.251e^-4	0.961	INTRON Nrx-IV
2R	6368848	2R_6368848_SNP [dm3] 2R_10481343_SNP [dm6]	A	T	5.255e^-4	0.961	DOWNSTREAM lola & 1 other INTRON CG17765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	16441541	2L_16441541_SNP [dm3] 2L_16441541_SNP [dm6]	A	G	5.256e^-4	0.961	INTRON CG5888
2R	1018016	2R_1018016_SNP [dm3] 2R_5130511_SNP [dm6]	T	C	5.256e^-4	0.961	INTERGENIC
3L	10701652	3L_10701652_SNP [dm3] 3L_10708552_SNP [dm6]	C	T	5.262e^-4	0.961	INTERGENIC
2R	3395751	2R_3395751_SNP [dm3] 2R_7508246_SNP [dm6]	T	C	5.266e^-4	0.961	UTR_3_PRIME didum DOWNSTREAM CG12736 & 1 other
2L	11482617	2L_11482617_SNP [dm3] 2L_11482617_SNP [dm6]	G	A	5.287e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22199745	X_22199745_SNP [dm3] X_22797909_SNP [dm6]	A	C	5.289e^-4	0.961	DOWNSTREAM CR44997 INTERGENIC
2R	16954312	2R_16954312_SNP [dm3] 2R_21066807_SNP [dm6]	G	A	5.290e^-4	0.961	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
3R	17760726	3R_17760726_SNP [dm3] 3R_21935004_SNP [dm6]	G	T	5.294e^-4	0.961	INTERGENIC
2R	15968114	2R_15968114_SNP [dm3] 2R_20080609_SNP [dm6]	T	A	5.305e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	26275020	3R_26275020_SNP [dm3] 3R_30449298_SNP [dm6]	T	C	5.314e^-4	0.961	INTRON aralar1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1669356	2L_1669356_SNP [dm3] 2L_1669356_SNP [dm6]	G	A	5.315e^-4	0.961	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1258531	3L_1258531_SNP [dm3] 3L_1258531_SNP [dm6]	C	T	5.325e^-4	0.961	INTRON CG9134
2L	6681395	2L_6681395_INS [dm3] 2L_6681395_INS [dm6]	G	GG	5.340e^-4	0.961	SPLICE_SITE_REGION Nhe3 INTRON Nhe3	TF binding site mE1_TFBS_inv
2L	4803931	2L_4803931_SNP [dm3] 2L_4803931_SNP [dm6]	A	T	5.352e^-4	0.961	INTERGENIC
3R	6379087	3R_6379087_SNP [dm3] 3R_10553365_SNP [dm6]	C	G	5.354e^-4	0.961	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9641698	3R_9641698_SNP [dm3] 3R_13815976_SNP [dm6]	G	A	5.362e^-4	0.961	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25864958	3R_25864958_SNP [dm3] 3R_30039236_SNP [dm6]	C	G	5.377e^-4	0.961	UPSTREAM Sry-beta & 1 other INTRON janA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23402443	3R_23402443_SNP [dm3] 3R_27576721_SNP [dm6]	T	C	5.377e^-4	0.961	INTRON wdb
3R	8975342	3R_8975342_SNP [dm3] 3R_13149620_SNP [dm6]	G	A	5.378e^-4	0.961	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	10257390	3R_10257390_SNP [dm3] 3R_14431668_SNP [dm6]	T	A	5.380e^-4	0.961	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3R	15102348	3R_15102348_INS [dm3] 3R_19276626_INS [dm6]	T	TT	5.383e^-4	0.961	INTERGENIC
3L	2124997	3L_2124997_DEL [dm3] 3L_2124997_DEL [dm6]	AA	A	5.388e^-4	0.961	INTRON zormin
3L	6722065	3L_6722065_SNP [dm3] 3L_6728965_SNP [dm6]	T	C	5.391e^-4	0.961	UTR_3_PRIME dikar DOWNSTREAM CR45417	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24924286	3R_24924286_SNP [dm3] 3R_29098564_SNP [dm6]	G	A	5.401e^-4	0.961	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24796667	3R_24796667_SNP [dm3] 3R_28970945_SNP [dm6]	G	A	5.424e^-4	0.961	UPSTREAM CG14521 EXON CR45669
3R	22032494	3R_22032494_SNP [dm3] 3R_26206772_SNP [dm6]	A	G	5.427e^-4	0.961	INTRON CR44320
3L	14503658	3L_14503658_SNP [dm3] 3L_14510558_SNP [dm6]	G	A	5.431e^-4	0.961	UPSTREAM bbg INTRON bbg
3L	755307	3L_755307_SNP [dm3] 3L_755307_SNP [dm6]	C	T	5.434e^-4	0.961	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26947697	3R_26947697_SNP [dm3] 3R_31121975_SNP [dm6]	A	C	5.441e^-4	0.961	DOWNSTREAM Prosalpha3T INTERGENIC
2L	3987575	2L_3987575_SNP [dm3] 2L_3987575_SNP [dm6]	T	C	5.449e^-4	0.961	INTRON fred
3L	14501938	3L_14501938_SNP [dm3] 3L_14508838_SNP [dm6]	T	G	5.449e^-4	0.961	NON_SYNONYMOUS_CODING bbg
3R	25739141	3R_25739141_SNP [dm3] 3R_29913419_SNP [dm6]	G	A	5.452e^-4	0.961	DOWNSTREAM CG31036 INTRON Capa
3R	9403417	3R_9403417_SNP [dm3] 3R_13577695_SNP [dm6]	C	T	5.452e^-4	0.961	INTERGENIC
3L	13749106	3L_13749106_SNP [dm3] 3L_13756006_SNP [dm6]	G	C	5.454e^-4	0.961	INTRON bru-3
2R	8984670	2R_8984670_SNP [dm3] 2R_13097165_SNP [dm6]	A	C	5.459e^-4	0.961	INTERGENIC
4	307083	4_307083_SNP [dm3] 4_286457_SNP [dm6]	C	T	5.470e^-4	0.961	INTRON Syt7	transposable element FlyBase
2R	16174421	2R_16174421_SNP [dm3] 2R_20286916_SNP [dm6]	T	A	5.471e^-4	0.961	UTR_5_PRIME CG16868 UPSTREAM CG34199	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	22199804	X_22199804_SNP [dm3] X_22797968_SNP [dm6]	A	G	5.474e^-4	0.961	DOWNSTREAM CR44997 INTERGENIC
3R	14171186	3R_14171186_SNP [dm3] 3R_18345464_SNP [dm6]	A	C	5.483e^-4	0.961	INTRON CG15803
3L	969175	3L_969175_SNP [dm3] 3L_969175_SNP [dm6]	G	T	5.487e^-4	0.961	INTRON Glut1
2L	9131097	2L_9131097_DEL [dm3] 2L_9131097_DEL [dm6]	AA	A	5.489e^-4	0.961	INTRON CG32982
3R	11124525	3R_11124525_SNP [dm3] 3R_15298803_SNP [dm6]	A	T	5.494e^-4	0.961	INTRON Tm1
2L	6511625	2L_6511625_SNP [dm3] 2L_6511625_SNP [dm6]	C	T	5.496e^-4	0.961	INTRON CG31637
2L	2498298	2L_2498298_SNP [dm3] 2L_2498298_SNP [dm6]	C	T	5.501e^-4	0.961	UTR_3_PRIME oaf DOWNSTREAM oaf
3L	1614107	3L_1614107_SNP [dm3] 3L_1614107_SNP [dm6]	A	G	5.505e^-4	0.961	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17782579	2R_17782579_SNP [dm3] 2R_21895074_SNP [dm6]	C	A	5.511e^-4	0.961	INTRON Fili
3R	23445611	3R_23445611_DEL [dm3] 3R_27619889_DEL [dm6]	GTGAGGCCAG	G	5.519e^-4	0.961	INTRON Tusp
2L	5624931	2L_5624931_SNP [dm3] 2L_5624931_SNP [dm6]	A	G	5.520e^-4	0.961	INTERGENIC
2L	5624934	2L_5624934_DEL [dm3] 2L_5624934_DEL [dm6]	AC	A	5.520e^-4	0.961	INTERGENIC
2L	17898472	2L_17898472_SNP [dm3] 2L_17898472_SNP [dm6]	C	A	5.550e^-4	0.961	INTERGENIC
3L	6796310	3L_6796310_SNP [dm3] 3L_6803210_SNP [dm6]	G	T	5.552e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6681415	2L_6681415_SNP [dm3] 2L_6681415_SNP [dm6]	T	G	5.556e^-4	0.961	INTRON Nhe3	TF binding site mE1_TFBS_inv
2R	10578986	2R_10578986_SNP [dm3] 2R_14691481_SNP [dm6]	A	T	5.563e^-4	0.961	INTRON mspo
3R	4150894	3R_4150894_SNP [dm3] 3R_8325172_SNP [dm6]	A	G	5.572e^-4	0.961	DOWNSTREAM CG7443 INTRON Poxm	TF binding site mE1_TFBS_HSA
3L	13246862	3L_13246862_SNP [dm3] 3L_13253762_SNP [dm6]	T	G	5.573e^-4	0.961	INTRON caps	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5086425	2L_5086425_SNP [dm3] 2L_5086425_SNP [dm6]	C	T	5.576e^-4	0.961	INTRON pgant5
2R	4317970	2R_4317970_SNP [dm3] 2R_8430465_SNP [dm6]	T	G	5.578e^-4	0.961	UTR_3_PRIME Lcp1 DOWNSTREAM Lcp1
3R	6820940	3R_6820940_SNP [dm3] 3R_10995218_SNP [dm6]	C	T	5.589e^-4	0.961	INTRON CG34114
2R	13797028	2R_13797028_SNP [dm3] 2R_17909523_SNP [dm6]	C	T	5.594e^-4	0.961	INTRON Elk
2R	13797042	2R_13797042_SNP [dm3] 2R_17909537_SNP [dm6]	A	T	5.594e^-4	0.961	INTRON Elk
3R	13301185	3R_13301185_SNP [dm3] 3R_17475463_SNP [dm6]	A	C	5.596e^-4	0.961	INTRON Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9550741	3R_9550741_SNP [dm3] 3R_13725019_SNP [dm6]	A	T	5.596e^-4	0.961	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	23505066	3R_23505066_SNP [dm3] 3R_27679344_SNP [dm6]	G	A	5.597e^-4	0.961	UTR_5_PRIME CG12883 DOWNSTREAM CG5590	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

ERStress_t50 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results