DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.989e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004011

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.4427	0.0147

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2180 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	21691827	2L_21691827_SNP [dm3] 2L_21691827_SNP [dm6]	G	A	4.307e^-7	0.656	INTRON CG31619
X	19368536	X_19368536_SNP [dm3] X_19474503_SNP [dm6]	G	A	6.996e^-7	0.656	SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18411378	3L_18411378_SNP [dm3] 3L_18418278_SNP [dm6]	A	C	3.788e^-6	0.754	INTERGENIC
2L	21702529	2L_21702529_INS [dm3] 2L_21702529_INS [dm6]	A	AAACAGCCACCAAA...	3.862e^-6	0.754	INTRON CG31619
3R	24364663	3R_24364663_SNP [dm3] 3R_28538941_SNP [dm6]	C	T	4.548e^-6	0.754	INTRON Ppn
X	14638071	X_14638071_SNP [dm3] X_14744038_SNP [dm6]	A	T	4.625e^-6	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19368582	X_19368582_SNP [dm3] X_19474549_SNP [dm6]	G	A	4.976e^-6	0.754	NON_SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7609639	3L_7609639_SNP [dm3] 3L_7616539_SNP [dm6]	A	G	5.625e^-6	0.754	INTRON CG33275
3R	25465246	3R_25465246_SNP [dm3] 3R_29639524_SNP [dm6]	T	C	7.117e^-6	0.754	INTRON Dop1R2
2L	15388352	2L_15388352_SNP [dm3] 2L_15388352_SNP [dm6]	C	A	8.432e^-6	0.754	INTERGENIC
3L	3872751	3L_3872751_SNP [dm3] 3L_3872751_SNP [dm6]	A	T	9.089e^-6	0.754	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3R	10966801	3R_10966801_SNP [dm3] 3R_15141079_SNP [dm6]	C	T	9.119e^-6	0.754	NON_SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22149820	X_22149820_INS [dm3] X_22747984_INS [dm6]	C	CGCC	9.121e^-6	0.754	INTRON CR44997
X	9794055	X_9794055_DEL [dm3] X_9900022_DEL [dm6]	AAACAATATTTTAA...	A	9.400e^-6	0.754	UPSTREAM CG15249 INTERGENIC
2R	16033833	2R_16033833_SNP [dm3] 2R_20146328_SNP [dm6]	T	C	9.790e^-6	0.754	NON_SYNONYMOUS_CODING CG11041
2L	21708060	2L_21708060_SNP [dm3] 2L_21708060_SNP [dm6]	T	A	1.020e^-5	0.754	INTRON CG31619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	4666281	X_4666281_SNP [dm3] X_4772248_SNP [dm6]	G	A	1.039e^-5	0.754	UPSTREAM Bteb2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14638048	X_14638048_SNP [dm3] X_14744015_SNP [dm6]	G	A	1.053e^-5	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8060936	3R_8060936_SNP [dm3] 3R_12235214_SNP [dm6]	C	T	1.063e^-5	0.754	NON_SYNONYMOUS_CODING Cyp313a2 UPSTREAM Cyp313a5
3R	6702388	3R_6702388_SNP [dm3] 3R_10876666_SNP [dm6]	T	A	1.071e^-5	0.754	DOWNSTREAM CR45195 INTRON Sodh-2
2L	512473	2L_512473_SNP [dm3] 2L_512473_SNP [dm6]	A	C	1.105e^-5	0.754	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	7609670	3L_7609670_SNP [dm3] 3L_7616570_SNP [dm6]	G	A	1.122e^-5	0.754	INTRON CG33275
X	14638047	X_14638047_SNP [dm3] X_14744014_SNP [dm6]	T	G	1.124e^-5	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16763437	3R_16763437_SNP [dm3] 3R_20937715_SNP [dm6]	T	C	1.138e^-5	0.754	INTRON CG31191
3R	26926104	3R_26926104_SNP [dm3] 3R_31100382_SNP [dm6]	T	C	1.183e^-5	0.754	NON_SYNONYMOUS_CODING CG15553
3R	16763618	3R_16763618_SNP [dm3] 3R_20937896_SNP [dm6]	T	A	1.190e^-5	0.754	INTRON CG31191
3R	16763609	3R_16763609_SNP [dm3] 3R_20937887_SNP [dm6]	G	A	1.239e^-5	0.754	INTRON CG31191
X	14638058	X_14638058_SNP [dm3] X_14744025_SNP [dm6]	A	G	1.300e^-5	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	512404	2L_512404_SNP [dm3] 2L_512404_SNP [dm6]	T	C	1.332e^-5	0.754	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	2589439	2L_2589439_SNP [dm3] 2L_2589439_SNP [dm6]	A	T	1.436e^-5	0.754	INTERGENIC
3R	24605408	3R_24605408_DEL [dm3] 3R_28779686_DEL [dm6]	CT	A	1.437e^-5	0.754	INTERGENIC
X	9765024	X_9765024_SNP [dm3] X_9870991_SNP [dm6]	C	T	1.440e^-5	0.754	DOWNSTREAM CG45061 INTERGENIC
3L	3872673	3L_3872673_SNP [dm3] 3L_3872673_SNP [dm6]	T	C	1.454e^-5	0.754	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
X	14638053	X_14638053_SNP [dm3] X_14744020_SNP [dm6]	T	A	1.471e^-5	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20574803	3R_20574803_SNP [dm3] 3R_24749081_SNP [dm6]	T	A	1.502e^-5	0.754	UTR_3_PRIME tok UPSTREAM tld	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10317242	2R_10317242_SNP [dm3] 2R_14429737_SNP [dm6]	G	C	1.508e^-5	0.754	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13821096	2L_13821096_SNP [dm3] 2L_13821096_SNP [dm6]	T	C	1.569e^-5	0.754	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14638005	X_14638005_SNP [dm3] X_14743972_SNP [dm6]	C	T	1.584e^-5	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9764833	X_9764833_SNP [dm3] X_9870800_SNP [dm6]	A	T	1.645e^-5	0.754	DOWNSTREAM CG45061 INTERGENIC
3R	26529461	3R_26529461_SNP [dm3] 3R_30703739_SNP [dm6]	T	G	1.652e^-5	0.754	INTERGENIC
3L	464730	3L_464730_SNP [dm3] 3L_464730_SNP [dm6]	C	T	1.660e^-5	0.754	INTRON klar
2L	21933627	2L_21933627_SNP [dm3] 2L_21933627_SNP [dm6]	T	A	1.712e^-5	0.754	INTERGENIC
2L	512435	2L_512435_DEL [dm3] 2L_512435_DEL [dm6]	TT	T	1.743e^-5	0.754	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	14637985	X_14637985_DEL [dm3] X_14743952_DEL [dm6]	TAGAATATTT	T	1.813e^-5	0.754	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11999442	3L_11999442_SNP [dm3] 3L_12006342_SNP [dm6]	T	A	1.823e^-5	0.754	INTRON CG6928
2L	11702623	2L_11702623_SNP [dm3] 2L_11702623_SNP [dm6]	C	T	1.891e^-5	0.754	INTERGENIC
3L	18371963	3L_18371963_SNP [dm3] 3L_18378863_SNP [dm6]	T	A	1.914e^-5	0.754	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	26465959	3R_26465959_DEL [dm3] 3R_30640237_DEL [dm6]	CG	C	1.986e^-5	0.754	INTERGENIC
3L	1071260	3L_1071260_DEL [dm3] 3L_1071260_DEL [dm6]	CTTCGCTCTGC...	C	2.022e^-5	0.754	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3L	4057796	3L_4057796_SNP [dm3] 3L_4057796_SNP [dm6]	A	T	2.113e^-5	0.754	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22008099	2L_22008099_INS [dm3] 2L_22008099_INS [dm6]	T	TT	2.118e^-5	0.754	INTERGENIC
3R	16670978	3R_16670978_DEL [dm3] 3R_20845256_DEL [dm6]	AAAACCTATTC...	A	2.121e^-5	0.754	DOWNSTREAM CG15695 INTERGENIC
3L	18062419	3L_18062419_SNP [dm3] 3L_18069319_SNP [dm6]	G	A	2.132e^-5	0.754	NON_SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
2L	16500686	2L_16500686_SNP [dm3] 2L_16500686_SNP [dm6]	T	C	2.170e^-5	0.754	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24605406	3R_24605406_SNP [dm3] 3R_28779684_SNP [dm6]	A	G	2.341e^-5	0.774	INTERGENIC
2L	13807573	2L_13807573_SNP [dm3] 2L_13807573_SNP [dm6]	G	C	2.533e^-5	0.774	DOWNSTREAM adat INTRON CAH1
3R	22129899	3R_22129899_SNP [dm3] 3R_26304177_SNP [dm6]	C	A	2.554e^-5	0.774	INTERGENIC
2R	16170840	2R_16170840_SNP [dm3] 2R_20283335_SNP [dm6]	T	A	2.583e^-5	0.774	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22574074	3R_22574074_DEL [dm3] 3R_26748352_DEL [dm6]	ACGGACGCA	A	2.631e^-5	0.774	INTERGENIC
3R	21622577	3R_21622577_SNP [dm3] 3R_25796855_SNP [dm6]	T	C	2.693e^-5	0.774	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9794050	X_9794050_SNP [dm3] X_9900017_SNP [dm6]	T	A	2.709e^-5	0.774	UPSTREAM CG15249 INTERGENIC
2R	6825299	2R_6825299_SNP [dm3] 2R_10937794_SNP [dm6]	G	A	2.737e^-5	0.774	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12641673	3R_12641673_SNP [dm3] 3R_16815951_SNP [dm6]	A	G	2.803e^-5	0.774	INTRON abd-A	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21816185	3R_21816185_SNP [dm3] 3R_25990463_SNP [dm6]	T	C	2.836e^-5	0.774	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2R	5046276	2R_5046276_SNP [dm3] 2R_9158771_SNP [dm6]	T	C	2.984e^-5	0.774	SPLICE_SITE_REGION CG8008 INTRON CG8008
2L	17996916	2L_17996916_SNP [dm3] 2L_17996916_SNP [dm6]	G	C	3.019e^-5	0.774	INTERGENIC
2L	4503091	2L_4503091_SNP [dm3] 2L_4503091_SNP [dm6]	T	G	3.040e^-5	0.774	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15389284	2L_15389284_SNP [dm3] 2L_15389284_SNP [dm6]	T	C	3.114e^-5	0.774	INTERGENIC
2L	11702562	2L_11702562_SNP [dm3] 2L_11702562_SNP [dm6]	G	C	3.137e^-5	0.774	INTERGENIC
2L	5153746	2L_5153746_SNP [dm3] 2L_5153746_SNP [dm6]	T	A	3.155e^-5	0.774	INTRON Msp300
2L	21688676	2L_21688676_SNP [dm3] 2L_21688676_SNP [dm6]	C	A	3.183e^-5	0.774	INTRON CG31619
X	11218057	X_11218057_SNP [dm3] X_11324024_SNP [dm6]	G	A	3.210e^-5	0.774	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21365002	2L_21365002_SNP [dm3] 2L_21365002_SNP [dm6]	G	A	3.211e^-5	0.774	NON_SYNONYMOUS_CODING dtr
2L	13891112	2L_13891112_SNP [dm3] 2L_13891112_SNP [dm6]	G	A	3.217e^-5	0.774	INTRON CenG1A
3R	22936285	3R_22936285_SNP [dm3] 3R_27110563_SNP [dm6]	T	C	3.333e^-5	0.774	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26956994	3R_26956994_SNP [dm3] 3R_31131272_SNP [dm6]	A	T	3.336e^-5	0.774	UPSTREAM CG15556 INTERGENIC
2R	9101659	2R_9101659_SNP [dm3] 2R_13214154_SNP [dm6]	C	T	3.412e^-5	0.774	UPSTREAM CG4627 & 1 other INTRON AQP	TF binding site mE1_TFBS_run
2L	17328205	2L_17328205_SNP [dm3] 2L_17328205_SNP [dm6]	T	C	3.564e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18846008	2R_18846008_SNP [dm3] 2R_22958485_SNP [dm6]	T	C	3.699e^-5	0.774	INTERGENIC
3R	18801151	3R_18801151_SNP [dm3] 3R_22975429_SNP [dm6]	G	A	3.699e^-5	0.774	INTERGENIC
2L	4416374	2L_4416374_SNP [dm3] 2L_4416374_SNP [dm6]	T	A	3.713e^-5	0.774	INTRON CG15431
2L	17302634	2L_17302634_SNP [dm3] 2L_17302634_SNP [dm6]	A	G	3.859e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20414753	3R_20414753_SNP [dm3] 3R_24589031_SNP [dm6]	A	G	4.153e^-5	0.774	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	10998992	3L_10998992_SNP [dm3] 3L_11005892_SNP [dm6]	G	A	4.185e^-5	0.774	INTRON klu
3R	16923840	3R_16923840_SNP [dm3] 3R_21098118_SNP [dm6]	A	G	4.210e^-5	0.774	UPSTREAM RhoGAP93B DOWNSTREAM CG7044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13749041	2L_13749041_SNP [dm3] 2L_13749041_SNP [dm6]	G	A	4.231e^-5	0.774	INTRON CR44846 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	16763675	3R_16763675_SNP [dm3] 3R_20937953_SNP [dm6]	C	G	4.261e^-5	0.774	INTRON CG31191
X	8756926	X_8756926_SNP [dm3] X_8862893_SNP [dm6]	T	G	4.299e^-5	0.774	INTRON CG12075
2R	12457114	2R_12457114_SNP [dm3] 2R_16569609_SNP [dm6]	G	A	4.307e^-5	0.774	NON_SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15 INTRON CG4945	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5681952	3L_5681952_SNP [dm3] 3L_5688852_SNP [dm6]	G	T	4.336e^-5	0.774	INTRON sif
3R	18654837	3R_18654837_SNP [dm3] 3R_22829115_SNP [dm6]	C	A	4.401e^-5	0.774	INTERGENIC
2L	17328407	2L_17328407_SNP [dm3] 2L_17328407_SNP [dm6]	T	A	4.442e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10313935	2R_10313935_SNP [dm3] 2R_14426430_SNP [dm6]	G	A	4.477e^-5	0.774	DOWNSTREAM phyl INTERGENIC
3R	16763559	3R_16763559_SNP [dm3] 3R_20937837_SNP [dm6]	A	C	4.563e^-5	0.774	INTRON CG31191
X	20579493	X_20579493_SNP [dm3] X_20708466_SNP [dm6]	C	A	4.607e^-5	0.774	INTERGENIC	regulatory region REDfly_CRMs
3R	10955487	3R_10955487_SNP [dm3] 3R_15129765_SNP [dm6]	T	G	4.627e^-5	0.774	DOWNSTREAM mir-2493 INTRON CG42788
2L	17302472	2L_17302472_SNP [dm3] 2L_17302472_SNP [dm6]	G	T	4.637e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	17786640	3R_17786640_SNP [dm3] 3R_21960918_SNP [dm6]	C	T	4.652e^-5	0.774	INTRON Eip93F
3R	22936312	3R_22936312_SNP [dm3] 3R_27110590_SNP [dm6]	G	A	4.662e^-5	0.774	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18062598	3L_18062598_SNP [dm3] 3L_18069498_SNP [dm6]	G	A	4.676e^-5	0.774	DOWNSTREAM CG44005 INTRON CG44006
X	6887939	X_6887939_SNP [dm3] X_6993906_SNP [dm6]	T	C	4.699e^-5	0.774	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18160679	2L_18160679_SNP [dm3] 2L_18160679_SNP [dm6]	T	C	4.734e^-5	0.774	UTR_3_PRIME CG42750
3L	1006794	3L_1006794_SNP [dm3] 3L_1006794_SNP [dm6]	T	C	4.751e^-5	0.774	INTRON trio
3R	26766966	3R_26766966_SNP [dm3] 3R_30941244_SNP [dm6]	C	T	4.957e^-5	0.774	INTERGENIC
2L	1387175	2L_1387175_SNP [dm3] 2L_1387175_SNP [dm6]	A	G	4.961e^-5	0.774	SYNONYMOUS_CODING lea
3L	15953882	3L_15953882_SNP [dm3] 3L_15960782_SNP [dm6]	C	T	4.994e^-5	0.774	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
3R	17786727	3R_17786727_SNP [dm3] 3R_21961005_SNP [dm6]	A	T	5.050e^-5	0.774	INTRON Eip93F
3R	24492880	3R_24492880_SNP [dm3] 3R_28667158_SNP [dm6]	A	G	5.067e^-5	0.774	INTERGENIC
3R	18415783	3R_18415783_SNP [dm3] 3R_22590061_SNP [dm6]	C	T	5.118e^-5	0.774	INTRON Efa6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17302602	2L_17302602_SNP [dm3] 2L_17302602_SNP [dm6]	T	A	5.138e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14266934	3R_14266934_SNP [dm3] 3R_18441212_SNP [dm6]	A	G	5.162e^-5	0.774	INTRON fru
3R	20414684	3R_20414684_SNP [dm3] 3R_24588962_SNP [dm6]	G	T	5.234e^-5	0.774	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	14536174	2R_14536174_DEL [dm3] 2R_18648669_DEL [dm6]	TTGCCTC	T	5.245e^-5	0.774	INTRON SP2637
2R	14536187	2R_14536187_INS [dm3] 2R_18648682_INS [dm6]	T	TC	5.245e^-5	0.774	INTRON SP2637
2L	9347488	2L_9347488_SNP [dm3] 2L_9347488_SNP [dm6]	A	G	5.297e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	3981966	3L_3981966_SNP [dm3] 3L_3981966_SNP [dm6]	T	A	5.309e^-5	0.774	INTERGENIC	regulatory region REDfly_CRMs
3L	1016914	3L_1016914_SNP [dm3] 3L_1016914_SNP [dm6]	G	A	5.318e^-5	0.774	INTRON trio
2L	17302629	2L_17302629_SNP [dm3] 2L_17302629_SNP [dm6]	G	A	5.377e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8424949	3R_8424949_SNP [dm3] 3R_12599227_SNP [dm6]	C	T	5.432e^-5	0.774	INTERGENIC
2L	7073832	2L_7073832_SNP [dm3] 2L_7073832_SNP [dm6]	G	T	5.472e^-5	0.774	INTRON Pvf2
X	12744214	X_12744214_SNP [dm3] X_12850181_SNP [dm6]	T	G	5.552e^-5	0.774	INTRON Pde9
3R	8063138	3R_8063138_SNP [dm3] 3R_12237416_SNP [dm6]	A	T	5.645e^-5	0.774	NON_SYNONYMOUS_CODING Cyp313a3 UPSTREAM Cyp313a2
3L	1962606	3L_1962606_DEL [dm3] 3L_1962606_DEL [dm6]	TAACT	G	5.684e^-5	0.774	UPSTREAM SCOT INTRON mv
2L	11702547	2L_11702547_SNP [dm3] 2L_11702547_SNP [dm6]	T	G	5.688e^-5	0.774	INTERGENIC
2R	14536185	2R_14536185_SNP [dm3] 2R_18648680_SNP [dm6]	A	C	5.721e^-5	0.774	INTRON SP2637
2L	10751750	2L_10751750_SNP [dm3] 2L_10751750_SNP [dm6]	A	C	5.755e^-5	0.774	INTRON CG17124	TF binding site mE1_TFBS_cad
3R	26688428	3R_26688428_SNP [dm3] 3R_30862706_SNP [dm6]	G	C	5.791e^-5	0.774	INTERGENIC
2L	11702579	2L_11702579_SNP [dm3] 2L_11702579_SNP [dm6]	T	A	5.791e^-5	0.774	INTERGENIC
2R	18846023	2R_18846023_SNP [dm3] 2R_22958500_SNP [dm6]	C	T	5.797e^-5	0.774	INTERGENIC
2R	10106150	2R_10106150_SNP [dm3] 2R_14218645_SNP [dm6]	T	C	5.882e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	2523582	3L_2523582_SNP [dm3] 3L_2523582_SNP [dm6]	C	A	5.905e^-5	0.774	INTRON Spn
3L	8680647	3L_8680647_SNP [dm3] 3L_8687547_SNP [dm6]	C	T	5.920e^-5	0.774	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10145125	3R_10145125_SNP [dm3] 3R_14319403_SNP [dm6]	T	A	5.952e^-5	0.774	UTR_3_PRIME pr-set7 DOWNSTREAM Afti
3L	18062631	3L_18062631_SNP [dm3] 3L_18069531_SNP [dm6]	G	C	5.984e^-5	0.774	DOWNSTREAM CG44005 INTRON CG44006
2R	16908578	2R_16908578_SNP [dm3] 2R_21021073_SNP [dm6]	C	T	5.997e^-5	0.774	SYNONYMOUS_CODING RIC-3
3R	10901367	3R_10901367_SNP [dm3] 3R_15075645_SNP [dm6]	T	G	6.059e^-5	0.774	INTRON dpr9
2L	11702600	2L_11702600_SNP [dm3] 2L_11702600_SNP [dm6]	T	A	6.155e^-5	0.774	INTERGENIC
2L	11702607	2L_11702607_SNP [dm3] 2L_11702607_SNP [dm6]	T	G	6.181e^-5	0.774	INTERGENIC
X	17539670	X_17539670_SNP [dm3] X_17645637_SNP [dm6]	G	T	6.264e^-5	0.774	INTRON RhoGAPp190
2R	20198159	2R_20198159_SNP [dm3] 2R_24310636_SNP [dm6]	T	G	6.312e^-5	0.774	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3L	1524594	3L_1524594_SNP [dm3] 3L_1524594_SNP [dm6]	C	A	6.313e^-5	0.774	INTRON CG12090
3L	11130669	3L_11130669_SNP [dm3] 3L_11137569_SNP [dm6]	A	G	6.346e^-5	0.774	INTRON CG32082
2L	21998617	2L_21998617_DEL [dm3] 2L_21998617_DEL [dm6]	AAGCAGCTTGATCGAGAAAG...	A	6.488e^-5	0.774	INTERGENIC
3R	13000080	3R_13000080_INS [dm3] 3R_17174358_INS [dm6]	G	GG	6.642e^-5	0.774	INTRON Mur89F
2R	14536156	2R_14536156_DEL [dm3] 2R_18648651_DEL [dm6]	CCCCTCCCTGCCAC...	C	6.658e^-5	0.774	INTRON SP2637
X	9793966	X_9793966_SNP [dm3] X_9899933_SNP [dm6]	G	T	6.664e^-5	0.774	UPSTREAM CG15249 INTERGENIC
2L	2511617	2L_2511617_SNP [dm3] 2L_2511617_SNP [dm6]	A	G	6.690e^-5	0.774	INTERGENIC
3L	3822336	3L_3822336_SNP [dm3] 3L_3822336_SNP [dm6]	T	G	6.709e^-5	0.774	INTRON enc
2L	4416919	2L_4416919_SNP [dm3] 2L_4416919_SNP [dm6]	A	G	6.731e^-5	0.774	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	10518123	2R_10518123_SNP [dm3] 2R_14630618_SNP [dm6]	G	A	6.737e^-5	0.774	SYNONYMOUS_CODING CG10131
3L	4127811	3L_4127811_SNP [dm3] 3L_4127811_SNP [dm6]	G	A	6.779e^-5	0.774	INTRON ens
3R	16247799	3R_16247799_DEL [dm3] 3R_20422077_DEL [dm6]	AATGA	A	6.807e^-5	0.774	INTRON Gfrl
2R	18846017	2R_18846017_DEL [dm3] 2R_22958494_DEL [dm6]	TA	G	6.839e^-5	0.774	INTERGENIC
2L	22106234	2L_22106234_SNP [dm3] 2L_22106234_SNP [dm6]	T	C	6.870e^-5	0.774	UPSTREAM CG15219 DOWNSTREAM CG10834 INTERGENIC
3L	1253716	3L_1253716_SNP [dm3] 3L_1253716_SNP [dm6]	T	C	6.870e^-5	0.774	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad
2R	11557229	2R_11557229_SNP [dm3] 2R_15669724_SNP [dm6]	T	A	6.903e^-5	0.774	INTRON fus
3R	4472957	3R_4472957_SNP [dm3] 3R_8647235_SNP [dm6]	G	T	6.990e^-5	0.774	UTR_3_PRIME Mkk4 DOWNSTREAM Mkk4
2L	11195085	2L_11195085_SNP [dm3] 2L_11195085_SNP [dm6]	T	G	7.019e^-5	0.774	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
3R	21326584	3R_21326584_SNP [dm3] 3R_25500862_SNP [dm6]	T	G	7.035e^-5	0.774	DOWNSTREAM CR43456 INTERGENIC
2L	21998616	2L_21998616_SNP [dm3] 2L_21998616_SNP [dm6]	A	T	7.115e^-5	0.774	INTERGENIC
3R	23126891	3R_23126891_SNP [dm3] 3R_27301169_SNP [dm6]	A	T	7.179e^-5	0.774	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	21502946	3R_21502946_SNP [dm3] 3R_25677224_SNP [dm6]	G	A	7.231e^-5	0.774	UTR_3_PRIME CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
3R	22574022	3R_22574022_SNP [dm3] 3R_26748300_SNP [dm6]	C	T	7.249e^-5	0.774	INTERGENIC
3L	16881379	3L_16881379_SNP [dm3] 3L_16888279_SNP [dm6]	T	C	7.288e^-5	0.774	INTRON Lmpt
X	7088963	X_7088963_SNP [dm3] X_7194930_SNP [dm6]	G	A	7.358e^-5	0.774	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18160697	2L_18160697_SNP [dm3] 2L_18160697_SNP [dm6]	A	G	7.406e^-5	0.774	UTR_3_PRIME CG42750
2R	10043480	2R_10043480_SNP [dm3] 2R_14155975_SNP [dm6]	G	T	7.554e^-5	0.774	SYNONYMOUS_CODING pea	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18497635	2R_18497635_SNP [dm3] 2R_22610130_SNP [dm6]	T	C	7.579e^-5	0.774	SYNONYMOUS_CODING CG4329 DOWNSTREAM Vps20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16761488	3R_16761488_SNP [dm3] 3R_20935766_SNP [dm6]	T	A	7.631e^-5	0.774	INTRON CG31191
3R	18414011	3R_18414011_SNP [dm3] 3R_22588289_SNP [dm6]	G	A	7.636e^-5	0.774	SYNONYMOUS_CODING Efa6	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9101662	2R_9101662_SNP [dm3] 2R_13214157_SNP [dm6]	G	A	7.654e^-5	0.774	UPSTREAM CG4627 & 1 other INTRON AQP	TF binding site mE1_TFBS_run
X	18797738	X_18797738_SNP [dm3] X_18903705_SNP [dm6]	C	G	7.672e^-5	0.774	INTRON CG7378
2L	9338153	2L_9338153_SNP [dm3] 2L_9338153_SNP [dm6]	C	T	7.708e^-5	0.774	UTR_5_PRIME Eaat1
X	6194803	X_6194803_SNP [dm3] X_6300770_SNP [dm6]	C	T	7.812e^-5	0.774	NON_SYNONYMOUS_CODING CG12219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18665426	3R_18665426_SNP [dm3] 3R_22839704_SNP [dm6]	T	G	7.869e^-5	0.774	INTERGENIC
3R	4279569	3R_4279569_SNP [dm3] 3R_8453847_SNP [dm6]	A	G	7.891e^-5	0.774	INTRON CG45263
2L	4416388	2L_4416388_SNP [dm3] 2L_4416388_SNP [dm6]	G	A	7.934e^-5	0.774	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	9731277	3R_9731277_SNP [dm3] 3R_13905555_SNP [dm6]	A	T	7.974e^-5	0.774	DOWNSTREAM ems INTERGENIC
3R	21502572	3R_21502572_SNP [dm3] 3R_25676850_SNP [dm6]	C	T	7.976e^-5	0.774	SYNONYMOUS_CODING Lgr3 UPSTREAM CR45225 DOWNSTREAM CG4730
2R	9100751	2R_9100751_SNP [dm3] 2R_13213246_SNP [dm6]	A	G	7.981e^-5	0.774	SYNONYMOUS_CODING AQP
2L	21998641	2L_21998641_SNP [dm3] 2L_21998641_SNP [dm6]	C	T	8.016e^-5	0.774	INTERGENIC
3L	2721819	3L_2721819_SNP [dm3] 3L_2721819_SNP [dm6]	C	A	8.039e^-5	0.774	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21817272	3R_21817272_SNP [dm3] 3R_25991550_SNP [dm6]	G	A	8.095e^-5	0.774	SYNONYMOUS_CODING Nf1
X	10261758	X_10261758_SNP [dm3] X_10367725_SNP [dm6]	C	T	8.203e^-5	0.774	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	20302687	2L_20302687_SNP [dm3] 2L_20302687_SNP [dm6]	C	G	8.212e^-5	0.774	INTERGENIC
3R	25157933	3R_25157933_SNP [dm3] 3R_29332211_SNP [dm6]	A	T	8.233e^-5	0.774	INTERGENIC
2R	10059047	2R_10059047_SNP [dm3] 2R_14171542_SNP [dm6]	A	T	8.355e^-5	0.774	UPSTREAM CG8331 INTRON CG8331	TF binding site mE1_TFBS_HSA
3R	16763565	3R_16763565_SNP [dm3] 3R_20937843_SNP [dm6]	C	T	8.362e^-5	0.774	INTRON CG31191
3L	428506	3L_428506_SNP [dm3] 3L_428506_SNP [dm6]	G	T	8.423e^-5	0.774	INTERGENIC
3L	3558527	3L_3558527_SNP [dm3] 3L_3558527_SNP [dm6]	C	T	8.426e^-5	0.774	INTRON Eip63E
3R	16869049	3R_16869049_SNP [dm3] 3R_21043327_SNP [dm6]	T	C	8.491e^-5	0.774	UPSTREAM Dhc93AB & 1 other INTERGENIC
2R	14438188	2R_14438188_SNP [dm3] 2R_18550683_SNP [dm6]	A	G	8.579e^-5	0.774	INTERGENIC
3L	4029344	3L_4029344_SNP [dm3] 3L_4029344_SNP [dm6]	A	C	8.654e^-5	0.774	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3R	3416755	3R_3416755_SNP [dm3] 3R_7591033_SNP [dm6]	G	A	8.685e^-5	0.774	INTRON CG34127
3R	14931714	3R_14931714_SNP [dm3] 3R_19105992_SNP [dm6]	A	T	8.720e^-5	0.774	INTRON CG6040
X	9794082	X_9794082_SNP [dm3] X_9900049_SNP [dm6]	T	C	8.743e^-5	0.774	UPSTREAM CG15249 INTERGENIC
3R	15380611	3R_15380611_SNP [dm3] 3R_19554889_SNP [dm6]	G	A	8.754e^-5	0.774	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13793279	3L_13793279_SNP [dm3] 3L_13800179_SNP [dm6]	G	A	8.779e^-5	0.774	INTRON bru-3
2R	6435265	2R_6435265_SNP [dm3] 2R_10547760_SNP [dm6]	A	C	8.800e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23496711	3R_23496711_SNP [dm3] 3R_27670989_SNP [dm6]	C	T	8.849e^-5	0.774	SPLICE_SITE_REGION unc80 INTRON unc80
X	12744181	X_12744181_DEL [dm3] X_12850148_DEL [dm6]	ATA	T	8.868e^-5	0.774	INTRON Pde9
2L	13807528	2L_13807528_SNP [dm3] 2L_13807528_SNP [dm6]	T	A	8.881e^-5	0.774	DOWNSTREAM adat INTRON CAH1
3R	20414740	3R_20414740_SNP [dm3] 3R_24589018_SNP [dm6]	G	A	8.885e^-5	0.774	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	14154435	X_14154435_SNP [dm3] X_14260402_SNP [dm6]	T	A	8.920e^-5	0.774	UPSTREAM CG1461 INTERGENIC
X	10261740	X_10261740_SNP [dm3] X_10367707_SNP [dm6]	C	A	8.945e^-5	0.774	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	4458956	2L_4458956_SNP [dm3] 2L_4458956_SNP [dm6]	A	G	9.032e^-5	0.774	UTR_3_PRIME mRpL27 UPSTREAM RpL27A & 1 other DOWNSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22575110	3R_22575110_SNP [dm3] 3R_26749388_SNP [dm6]	G	A	9.074e^-5	0.774	INTERGENIC
2L	11645049	2L_11645049_SNP [dm3] 2L_11645049_SNP [dm6]	T	G	9.104e^-5	0.774	UTR_3_PRIME CG6614 DOWNSTREAM CG6614
3R	23527395	3R_23527395_SNP [dm3] 3R_27701673_SNP [dm6]	G	A	9.153e^-5	0.774	SYNONYMOUS_CODING btz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12597153	2L_12597153_SNP [dm3] 2L_12597153_SNP [dm6]	T	G	9.179e^-5	0.774	INTRON nub
3R	18729791	3R_18729791_SNP [dm3] 3R_22904069_SNP [dm6]	G	A	9.180e^-5	0.774	INTRON klg
X	14638016	X_14638016_SNP [dm3] X_14743983_SNP [dm6]	A	G	9.204e^-5	0.774	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15388379	2L_15388379_SNP [dm3] 2L_15388379_SNP [dm6]	C	A	9.245e^-5	0.774	INTERGENIC
3R	10343234	3R_10343234_SNP [dm3] 3R_14517512_SNP [dm6]	C	A	9.253e^-5	0.774	DOWNSTREAM CG34273 INTRON Pde6
2R	19228420	2R_19228420_SNP [dm3] 2R_23340897_SNP [dm6]	A	C	9.283e^-5	0.774	INTERGENIC
3L	3845228	3L_3845228_INS [dm3] 3L_3845228_INS [dm6]	A	AA	9.295e^-5	0.774	UPSTREAM Awh INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22575120	3R_22575120_SNP [dm3] 3R_26749398_SNP [dm6]	G	T	9.319e^-5	0.774	INTERGENIC
3L	1319223	3L_1319223_SNP [dm3] 3L_1319223_SNP [dm6]	A	C	9.335e^-5	0.774	DOWNSTREAM CG9153 INTRON Myo61F
3L	3863676	3L_3863676_SNP [dm3] 3L_3863676_SNP [dm6]	C	T	9.352e^-5	0.774	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8781498	X_8781498_SNP [dm3] X_8887465_SNP [dm6]	G	T	9.398e^-5	0.774	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13846001	2R_13846001_SNP [dm3] 2R_17958496_SNP [dm6]	C	A	9.431e^-5	0.774	INTERGENIC
2L	11702608	2L_11702608_SNP [dm3] 2L_11702608_SNP [dm6]	A	G	9.434e^-5	0.774	INTERGENIC
2L	13766667	2L_13766667_SNP [dm3] 2L_13766667_SNP [dm6]	A	C	9.465e^-5	0.774	INTRON TM9SF4
3R	16763767	3R_16763767_SNP [dm3] 3R_20938045_SNP [dm6]	C	G	9.582e^-5	0.774	INTRON CG31191
2R	13845983	2R_13845983_SNP [dm3] 2R_17958478_SNP [dm6]	C	T	9.597e^-5	0.774	INTERGENIC
X	904465	X_904465_SNP [dm3] X_1010432_SNP [dm6]	G	A	9.636e^-5	0.774	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	9.641e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6574834	2L_6574834_SNP [dm3] 2L_6574834_SNP [dm6]	G	T	9.652e^-5	0.774	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21634357	2L_21634357_SNP [dm3] 2L_21634357_SNP [dm6]	T	C	9.826e^-5	0.774	INTRON Ac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7548699	3L_7548699_SNP [dm3] 3L_7555599_SNP [dm6]	C	A	9.862e^-5	0.774	DOWNSTREAM CG14837 INTERGENIC
3R	22954357	3R_22954357_SNP [dm3] 3R_27128635_SNP [dm6]	T	C	9.874e^-5	0.774	SPLICE_SITE_REGION CG6051 INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20934526	X_20934526_SNP [dm3] X_21063499_SNP [dm6]	T	G	9.884e^-5	0.774	INTRON bves & 1 other	TF binding site mE1_TFBS_HSA
3R	16869089	3R_16869089_SNP [dm3] 3R_21043367_SNP [dm6]	G	T	9.913e^-5	0.774	UPSTREAM Dhc93AB & 1 other INTERGENIC
3L	3531164	3L_3531164_SNP [dm3] 3L_3531164_SNP [dm6]	A	G	9.914e^-5	0.774	INTRON Eip63E
2R	20019782	2R_20019782_SNP [dm3] 2R_24132259_SNP [dm6]	C	A	9.932e^-5	0.774	UPSTREAM tamo INTRON tamo
2L	1621504	2L_1621504_SNP [dm3] 2L_1621504_SNP [dm6]	G	T	9.939e^-5	0.774	EXON CR44603
2R	10108854	2R_10108854_SNP [dm3] 2R_14221349_SNP [dm6]	C	T	1.016e^-4	0.774	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10108865	2R_10108865_SNP [dm3] 2R_14221360_SNP [dm6]	T	A	1.016e^-4	0.774	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	3611165	3R_3611165_SNP [dm3] 3R_7785443_SNP [dm6]	T	C	1.016e^-4	0.774	DOWNSTREAM CG18748 INTRON CG18745
2L	12135047	2L_12135047_SNP [dm3] 2L_12135047_SNP [dm6]	T	C	1.017e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17276327	3L_17276327_SNP [dm3] 3L_17283227_SNP [dm6]	G	A	1.025e^-4	0.774	INTERGENIC
3R	17141370	3R_17141370_DEL [dm3] 3R_21315648_DEL [dm6]	AGACA	A	1.051e^-4	0.774	EXON Hsromega	TF binding site mE1_TFBS_zfh1
3R	22129909	3R_22129909_SNP [dm3] 3R_26304187_SNP [dm6]	G	T	1.053e^-4	0.774	INTERGENIC
2R	10108843	2R_10108843_SNP [dm3] 2R_14221338_SNP [dm6]	T	C	1.057e^-4	0.774	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16035282	2L_16035282_SNP [dm3] 2L_16035282_SNP [dm6]	A	T	1.058e^-4	0.774	INTRON beat-Ic
3R	17665422	3R_17665422_SNP [dm3] 3R_21839700_SNP [dm6]	G	A	1.067e^-4	0.774	INTERGENIC
X	5810921	X_5810921_SNP [dm3] X_5916888_SNP [dm6]	A	T	1.073e^-4	0.774	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1071187	3L_1071187_SNP [dm3] 3L_1071187_SNP [dm6]	A	G	1.073e^-4	0.774	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2R	16301279	2R_16301279_SNP [dm3] 2R_20413774_SNP [dm6]	C	T	1.076e^-4	0.774	INTERGENIC
3R	23126901	3R_23126901_SNP [dm3] 3R_27301179_SNP [dm6]	C	A	1.077e^-4	0.774	INTRON CG3339	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	15389100	2L_15389100_SNP [dm3] 2L_15389100_SNP [dm6]	A	T	1.079e^-4	0.774	INTERGENIC
3L	3833429	3L_3833429_SNP [dm3] 3L_3833429_SNP [dm6]	A	C	1.079e^-4	0.774	INTRON enc
X	9637154	X_9637154_SNP [dm3] X_9743121_SNP [dm6]	T	C	1.081e^-4	0.774	INTRON Sp1
2R	10331982	2R_10331982_SNP [dm3] 2R_14444477_SNP [dm6]	G	A	1.091e^-4	0.774	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2434385	3L_2434385_SNP [dm3] 3L_2434385_SNP [dm6]	A	C	1.093e^-4	0.774	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18564571	3L_18564571_SNP [dm3] 3L_18571471_SNP [dm6]	T	G	1.102e^-4	0.774	INTRON AstC-R1
X	9794038	X_9794038_SNP [dm3] X_9900005_SNP [dm6]	T	C	1.106e^-4	0.774	UPSTREAM CG15249 INTERGENIC
3L	6049216	3L_6049216_SNP [dm3] 3L_6056116_SNP [dm6]	C	T	1.109e^-4	0.774	SYNONYMOUS_CODING tan	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18088404	3R_18088404_SNP [dm3] 3R_22262682_SNP [dm6]	G	T	1.110e^-4	0.774	INTRON SKIP
3R	12739079	3R_12739079_SNP [dm3] 3R_16913357_SNP [dm6]	T	C	1.113e^-4	0.774	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25463332	3R_25463332_DEL [dm3] 3R_29637610_DEL [dm6]	AA	A	1.119e^-4	0.774	INTRON Dop1R2
2L	10624360	2L_10624360_SNP [dm3] 2L_10624360_SNP [dm6]	C	T	1.119e^-4	0.774	INTRON Trim9
3R	22134010	3R_22134010_SNP [dm3] 3R_26308288_SNP [dm6]	G	C	1.126e^-4	0.774	INTERGENIC
2R	10829271	2R_10829271_SNP [dm3] 2R_14941766_SNP [dm6]	C	A	1.129e^-4	0.774	UPSTREAM CG10257 INTERGENIC
3R	21622576	3R_21622576_SNP [dm3] 3R_25796854_SNP [dm6]	A	G	1.130e^-4	0.774	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12455629	3L_12455629_SNP [dm3] 3L_12462529_SNP [dm6]	C	G	1.130e^-4	0.774	DOWNSTREAM eyg INTERGENIC
X	5810917	X_5810917_SNP [dm3] X_5916884_SNP [dm6]	T	G	1.137e^-4	0.774	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15430532	2L_15430532_SNP [dm3] 2L_15430532_SNP [dm6]	C	T	1.140e^-4	0.774	INTERGENIC
2R	10106173	2R_10106173_INS [dm3] 2R_14218668_INS [dm6]	T	TC	1.142e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
X	9794039	X_9794039_DEL [dm3] X_9900006_DEL [dm6]	ATAACAAT	A	1.145e^-4	0.774	UPSTREAM CG15249 INTERGENIC
X	14539941	X_14539941_SNP [dm3] X_14645908_SNP [dm6]	T	G	1.147e^-4	0.774	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15842547	2R_15842547_SNP [dm3] 2R_19955042_SNP [dm6]	C	T	1.149e^-4	0.774	DOWNSTREAM CG44622 INTERGENIC
3L	16480068	3L_16480068_SNP [dm3] 3L_16486968_SNP [dm6]	G	C	1.153e^-4	0.774	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3R	21815237	3R_21815237_SNP [dm3] 3R_25989515_SNP [dm6]	G	A	1.153e^-4	0.774	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
X	7906745	X_7906745_SNP [dm3] X_8012712_SNP [dm6]	T	C	1.155e^-4	0.774	INTRON Tbh
3L	2313303	3L_2313303_SNP [dm3] 3L_2313303_SNP [dm6]	G	A	1.156e^-4	0.774	INTERGENIC
3R	6702013	3R_6702013_INS [dm3] 3R_10876291_INS [dm6]	A	AA	1.158e^-4	0.774	UPSTREAM Sodh-2 DOWNSTREAM CG4596 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5886881	2L_5886881_SNP [dm3] 2L_5886881_SNP [dm6]	A	G	1.160e^-4	0.774	DOWNSTREAM CR44577 & 1 other INTERGENIC
3L	4127886	3L_4127886_DEL [dm3] 3L_4127886_DEL [dm6]	CTAACA	C	1.162e^-4	0.774	INTRON ens
3L	2575158	3L_2575158_SNP [dm3] 3L_2575158_SNP [dm6]	C	A	1.163e^-4	0.774	INTRON msn
2R	16703900	2R_16703900_SNP [dm3] 2R_20816395_SNP [dm6]	T	C	1.166e^-4	0.774	INTERGENIC
2R	14897935	2R_14897935_SNP [dm3] 2R_19010430_SNP [dm6]	T	C	1.167e^-4	0.774	INTERGENIC
X	7574581	X_7574581_SNP [dm3] X_7680548_SNP [dm6]	G	A	1.168e^-4	0.774	UPSTREAM CR45667 & 1 other DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19891696	2R_19891696_SNP [dm3] 2R_24004173_SNP [dm6]	A	G	1.172e^-4	0.774	INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	10050976	2L_10050976_SNP [dm3] 2L_10050976_SNP [dm6]	G	A	1.183e^-4	0.779	UTR_3_PRIME CG33301 UPSTREAM CR44874 DOWNSTREAM CG33301
2R	13791536	2R_13791536_SNP [dm3] 2R_17904031_SNP [dm6]	A	T	1.193e^-4	0.781	INTRON Elk
3R	24561582	3R_24561582_SNP [dm3] 3R_28735860_SNP [dm6]	A	T	1.198e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9390413	2L_9390413_SNP [dm3] 2L_9390413_SNP [dm6]	G	A	1.199e^-4	0.781	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
3R	16692910	3R_16692910_SNP [dm3] 3R_20867188_SNP [dm6]	G	C	1.212e^-4	0.783	UPSTREAM CG3822 INTERGENIC
3L	2667835	3L_2667835_SNP [dm3] 3L_2667835_SNP [dm6]	C	A	1.217e^-4	0.783	INTRON Fife
2L	12135110	2L_12135110_SNP [dm3] 2L_12135110_SNP [dm6]	C	A	1.217e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10342257	3R_10342257_SNP [dm3] 3R_14516535_SNP [dm6]	T	G	1.225e^-4	0.783	UPSTREAM CG34273 INTRON Pde6
2L	22102397	2L_22102397_SNP [dm3] 2L_22102397_SNP [dm6]	C	T	1.226e^-4	0.783	DOWNSTREAM CG31703 INTERGENIC
2R	9973242	2R_9973242_SNP [dm3] 2R_14085737_SNP [dm6]	C	T	1.227e^-4	0.783	INTRON Prosap
3R	16863351	3R_16863351_SNP [dm3] 3R_21037629_SNP [dm6]	A	G	1.231e^-4	0.783	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	22102402	2L_22102402_SNP [dm3] 2L_22102402_SNP [dm6]	A	T	1.238e^-4	0.784	DOWNSTREAM CG31703 INTERGENIC
2L	13746367	2L_13746367_SNP [dm3] 2L_13746367_SNP [dm6]	T	A	1.242e^-4	0.785	UPSTREAM TM9SF4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8459675	2R_8459675_SNP [dm3] 2R_12572170_SNP [dm6]	T	C	1.259e^-4	0.791	SYNONYMOUS_CODING ClC-b DOWNSTREAM stil	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	2589429	2L_2589429_SNP [dm3] 2L_2589429_SNP [dm6]	A	T	1.262e^-4	0.791	INTERGENIC
3R	14931695	3R_14931695_SNP [dm3] 3R_19105973_SNP [dm6]	G	T	1.275e^-4	0.791	INTRON CG6040
2R	15892467	2R_15892467_SNP [dm3] 2R_20004962_SNP [dm6]	A	T	1.278e^-4	0.791	NON_SYNONYMOUS_CODING CG16898
2R	15892469	2R_15892469_INS [dm3] 2R_20004964_INS [dm6]	TGG	ACATT	1.278e^-4	0.791
X	9830176	X_9830176_SNP [dm3] X_9936143_SNP [dm6]	G	A	1.281e^-4	0.791	INTERGENIC
3L	2839229	3L_2839229_SNP [dm3] 3L_2839229_SNP [dm6]	T	A	1.287e^-4	0.791	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2R	9916007	2R_9916007_SNP [dm3] 2R_14028502_SNP [dm6]	A	T	1.291e^-4	0.791	UPSTREAM CG18371 INTRON mam
2L	1193958	2L_1193958_SNP [dm3] 2L_1193958_SNP [dm6]	T	A	1.295e^-4	0.791	INTRON CG5001
X	7088900	X_7088900_DEL [dm3] X_7194867_DEL [dm6]	GG	G	1.310e^-4	0.791	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5888753	3L_5888753_SNP [dm3] 3L_5895653_SNP [dm6]	A	G	1.312e^-4	0.791	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18353582	2L_18353582_SNP [dm3] 2L_18353582_SNP [dm6]	T	C	1.319e^-4	0.791	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20224428	X_20224428_SNP [dm3] X_20353401_SNP [dm6]	C	T	1.321e^-4	0.791	INTERGENIC
3R	26528656	3R_26528656_SNP [dm3] 3R_30702934_SNP [dm6]	T	C	1.322e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7005477	2L_7005477_SNP [dm3] 2L_7005477_SNP [dm6]	C	A	1.322e^-4	0.791	INTRON uif
3R	16869113	3R_16869113_SNP [dm3] 3R_21043391_SNP [dm6]	G	A	1.326e^-4	0.791	UPSTREAM Dhc93AB & 1 other INTERGENIC
X	5810978	X_5810978_SNP [dm3] X_5916945_SNP [dm6]	C	A	1.328e^-4	0.791	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3483455	X_3483455_SNP [dm3] X_3589422_SNP [dm6]	T	C	1.332e^-4	0.791	INTRON AstA-R1
2R	18095568	2R_18095568_SNP [dm3] 2R_22208063_SNP [dm6]	G	A	1.335e^-4	0.791	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6827043	2R_6827043_SNP [dm3] 2R_10939538_SNP [dm6]	A	T	1.338e^-4	0.791	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	10414351	2L_10414351_SNP [dm3] 2L_10414351_SNP [dm6]	A	T	1.342e^-4	0.792	UPSTREAM CG5355 & 1 other INTRON Klp31E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	10329220	X_10329220_SNP [dm3] X_10435187_SNP [dm6]	G	T	1.353e^-4	0.794	INTRON CG32683
2L	4458921	2L_4458921_SNP [dm3] 2L_4458921_SNP [dm6]	G	T	1.354e^-4	0.794	UTR_3_PRIME mRpL27 UPSTREAM RpL27A & 1 other DOWNSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14931678	3R_14931678_SNP [dm3] 3R_19105956_SNP [dm6]	C	G	1.362e^-4	0.796	INTRON CG6040
3L	5888790	3L_5888790_SNP [dm3] 3L_5895690_SNP [dm6]	G	A	1.380e^-4	0.803	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19226465	3R_19226465_SNP [dm3] 3R_23400743_SNP [dm6]	C	A	1.389e^-4	0.803	UPSTREAM CR44323 INTERGENIC
3R	16987862	3R_16987862_SNP [dm3] 3R_21162140_SNP [dm6]	C	A	1.398e^-4	0.803	INTRON SNF4Agamma
3R	10343265	3R_10343265_SNP [dm3] 3R_14517543_SNP [dm6]	C	G	1.401e^-4	0.803	DOWNSTREAM CG34273 INTRON Pde6
2L	11702768	2L_11702768_SNP [dm3] 2L_11702768_SNP [dm6]	A	T	1.401e^-4	0.803	INTERGENIC
3R	16763516	3R_16763516_SNP [dm3] 3R_20937794_SNP [dm6]	A	G	1.402e^-4	0.803	INTRON CG31191
3L	3863671	3L_3863671_SNP [dm3] 3L_3863671_SNP [dm6]	C	A	1.406e^-4	0.803	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21502943	3R_21502943_SNP [dm3] 3R_25677221_SNP [dm6]	A	G	1.408e^-4	0.803	UTR_3_PRIME CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
2R	15185660	2R_15185660_SNP [dm3] 2R_19298155_SNP [dm6]	T	C	1.424e^-4	0.809	UPSTREAM Tab2 INTRON Tab2	TF binding site mE1_TFBS_Trl
3L	2839224	3L_2839224_DEL [dm3] 3L_2839224_DEL [dm6]	TT	T	1.436e^-4	0.81	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2R	20021221	2R_20021221_DEL [dm3] 2R_24133698_DEL [dm6]	TAA	T	1.450e^-4	0.81	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6987352	3R_6987352_SNP [dm3] 3R_11161630_SNP [dm6]	A	T	1.458e^-4	0.81	SYNONYMOUS_CODING CG4757	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	951797	2L_951797_SNP [dm3] 2L_951797_SNP [dm6]	C	T	1.466e^-4	0.81	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8575903	3R_8575903_SNP [dm3] 3R_12750181_SNP [dm6]	A	G	1.474e^-4	0.81	INTRON beat-Vc
3L	16066366	3L_16066366_SNP [dm3] 3L_16073266_SNP [dm6]	C	T	1.482e^-4	0.81	UPSTREAM Mbs INTRON Mbs
2R	8457818	2R_8457818_SNP [dm3] 2R_12570313_SNP [dm6]	C	T	1.484e^-4	0.81	UPSTREAM stil & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5810913	X_5810913_SNP [dm3] X_5916880_SNP [dm6]	C	T	1.484e^-4	0.81	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19478039	2R_19478039_SNP [dm3] 2R_23590516_SNP [dm6]	A	T	1.489e^-4	0.81	INTRON apt
2R	16228179	2R_16228179_SNP [dm3] 2R_20340674_SNP [dm6]	G	T	1.492e^-4	0.81	INTERGENIC
X	4766060	X_4766060_SNP [dm3] X_4872027_SNP [dm6]	T	C	1.496e^-4	0.81	INTRON CG42594
3R	6702393	3R_6702393_SNP [dm3] 3R_10876671_SNP [dm6]	A	G	1.497e^-4	0.81	DOWNSTREAM CR45195 INTRON Sodh-2
X	5810933	X_5810933_MNP [dm3] X_5916900_MNP [dm6]	TTG	ACC	1.500e^-4	0.81	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5810940	X_5810940_DEL [dm3] X_5916907_DEL [dm6]	AA	A	1.500e^-4	0.81	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24504367	3R_24504367_SNP [dm3] 3R_28678645_SNP [dm6]	G	C	1.507e^-4	0.81	INTRON CG9990
3L	10669286	3L_10669286_SNP [dm3] 3L_10676186_SNP [dm6]	G	A	1.507e^-4	0.81	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19295792	2R_19295792_SNP [dm3] 2R_23408269_SNP [dm6]	G	T	1.509e^-4	0.81	INTERGENIC
X	10613926	X_10613926_SNP [dm3] X_10719893_SNP [dm6]	T	C	1.510e^-4	0.81	INTRON CG32676
3L	4328729	3L_4328729_SNP [dm3] 3L_4328729_SNP [dm6]	T	C	1.516e^-4	0.81	INTRON Cip4
3L	5682239	3L_5682239_SNP [dm3] 3L_5689139_SNP [dm6]	G	T	1.517e^-4	0.81	INTRON sif
3L	3863686	3L_3863686_SNP [dm3] 3L_3863686_SNP [dm6]	A	C	1.527e^-4	0.81	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14156846	X_14156846_SNP [dm3] X_14262813_SNP [dm6]	G	T	1.534e^-4	0.81	INTRON CG1461
X	9793977	X_9793977_DEL [dm3] X_9899944_DEL [dm6]	TTTAACAATATAAAGTTATA...	T	1.539e^-4	0.81	UPSTREAM CG15249 INTERGENIC
2R	16923852	2R_16923852_SNP [dm3] 2R_21036347_SNP [dm6]	T	G	1.541e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14192640	2L_14192640_SNP [dm3] 2L_14192640_SNP [dm6]	T	C	1.541e^-4	0.81	INTRON Dyrk2
3L	11401520	3L_11401520_SNP [dm3] 3L_11408420_SNP [dm6]	C	G	1.545e^-4	0.81	INTERGENIC
3R	5148563	3R_5148563_SNP [dm3] 3R_9322841_SNP [dm6]	C	A	1.549e^-4	0.81	DOWNSTREAM HP1e INTRON CG8861
2R	4311332	2R_4311332_SNP [dm3] 2R_8423827_SNP [dm6]	T	A	1.551e^-4	0.81	INTRON CSN7
2R	14172066	2R_14172066_SNP [dm3] 2R_18284561_SNP [dm6]	T	G	1.551e^-4	0.81	DOWNSTREAM sbb INTRON sbb	TF binding site mE1_TFBS_cad
2L	12503803	2L_12503803_SNP [dm3] 2L_12503803_SNP [dm6]	T	G	1.558e^-4	0.81	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	11294803	3R_11294803_SNP [dm3] 3R_15469081_SNP [dm6]	C	A	1.563e^-4	0.81	INTRON AdamTS-A
3L	2527553	3L_2527553_SNP [dm3] 3L_2527553_SNP [dm6]	C	A	1.566e^-4	0.81	UPSTREAM CG32295 INTRON Spn
3R	16872055	3R_16872055_SNP [dm3] 3R_21046333_SNP [dm6]	C	T	1.578e^-4	0.81	SPLICE_SITE_REGION CG31207 UPSTREAM CG31189 INTRON CG31207	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14021504	2L_14021504_SNP [dm3] 2L_14021504_SNP [dm6]	G	C	1.582e^-4	0.81	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7088954	X_7088954_SNP [dm3] X_7194921_SNP [dm6]	G	A	1.585e^-4	0.81	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13350584	3R_13350584_SNP [dm3] 3R_17524862_SNP [dm6]	A	T	1.585e^-4	0.81	INTERGENIC
3L	3719836	3L_3719836_SNP [dm3] 3L_3719836_SNP [dm6]	C	A	1.590e^-4	0.81	INTRON CG32264
2L	1147402	2L_1147402_SNP [dm3] 2L_1147402_SNP [dm6]	C	T	1.594e^-4	0.81	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
3R	22575097	3R_22575097_SNP [dm3] 3R_26749375_SNP [dm6]	C	G	1.599e^-4	0.81	INTERGENIC
3R	22575099	3R_22575099_DEL [dm3] 3R_26749377_DEL [dm6]	CTGCAATG	C	1.599e^-4	0.81	INTERGENIC
X	20224408	X_20224408_SNP [dm3] X_20353381_SNP [dm6]	C	A	1.616e^-4	0.81	INTERGENIC
3R	16719596	3R_16719596_SNP [dm3] 3R_20893874_SNP [dm6]	C	G	1.626e^-4	0.81	UPSTREAM CR44947 DOWNSTREAM CG10830 INTERGENIC
3R	16763804	3R_16763804_SNP [dm3] 3R_20938082_SNP [dm6]	G	T	1.627e^-4	0.81	INTRON CG31191
2R	14323526	2R_14323526_SNP [dm3] 2R_18436021_SNP [dm6]	T	C	1.628e^-4	0.81	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	1.629e^-4	0.81	INTRON CG44153 & 1 other
2L	8603628	2L_8603628_SNP [dm3] 2L_8603628_SNP [dm6]	A	G	1.635e^-4	0.81	INTRON Sema-1a
X	20224423	X_20224423_SNP [dm3] X_20353396_SNP [dm6]	T	C	1.636e^-4	0.81	INTERGENIC
3L	2839212	3L_2839212_SNP [dm3] 3L_2839212_SNP [dm6]	C	T	1.638e^-4	0.81	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2L	13500570	2L_13500570_SNP [dm3] 2L_13500570_SNP [dm6]	C	A	1.639e^-4	0.81	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24992042	3R_24992042_SNP [dm3] 3R_29166320_SNP [dm6]	G	C	1.641e^-4	0.81	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
2R	12011944	2R_12011944_SNP [dm3] 2R_16124439_SNP [dm6]	G	A	1.648e^-4	0.811	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10452714	2R_10452714_SNP [dm3] 2R_14565209_SNP [dm6]	T	A	1.655e^-4	0.812	INTRON ttv
3L	7406159	3L_7406159_INS [dm3] 3L_7413059_INS [dm6]	A	ACA	1.658e^-4	0.812	INTERGENIC
3L	18294388	3L_18294388_SNP [dm3] 3L_18301288_SNP [dm6]	T	A	1.664e^-4	0.813	UPSTREAM CG13700 INTERGENIC
2R	10059027	2R_10059027_SNP [dm3] 2R_14171522_SNP [dm6]	G	A	1.670e^-4	0.813	UPSTREAM CG8331 INTRON CG8331	TF binding site mE1_TFBS_HSA
3L	8399393	3L_8399393_SNP [dm3] 3L_8406293_SNP [dm6]	G	A	1.674e^-4	0.813	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
2L	12179484	2L_12179484_SNP [dm3] 2L_12179484_SNP [dm6]	G	A	1.677e^-4	0.813	INTRON aret
2L	21965398	2L_21965398_SNP [dm3] 2L_21965398_SNP [dm6]	C	A	1.681e^-4	0.813	INTERGENIC
3R	16868410	3R_16868410_SNP [dm3] 3R_21042688_SNP [dm6]	T	A	1.696e^-4	0.818	UPSTREAM Dhc93AB INTERGENIC
2L	2331951	2L_2331951_SNP [dm3] 2L_2331951_SNP [dm6]	C	T	1.707e^-4	0.82	INTRON CG9967 & 1 other
3R	26592141	3R_26592141_SNP [dm3] 3R_30766419_SNP [dm6]	G	A	1.713e^-4	0.82	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	14091592	3L_14091592_SNP [dm3] 3L_14098492_SNP [dm6]	C	T	1.717e^-4	0.82	UPSTREAM Fbp1 INTERGENIC
X	5810950	X_5810950_SNP [dm3] X_5916917_SNP [dm6]	G	C	1.718e^-4	0.82	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	1.724e^-4	0.821	INTRON Gfrl
3R	9716895	3R_9716895_SNP [dm3] 3R_13891173_SNP [dm6]	G	A	1.738e^-4	0.825	INTERGENIC
3L	11419565	3L_11419565_SNP [dm3] 3L_11426465_SNP [dm6]	C	A	1.742e^-4	0.825	DOWNSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17396410	2L_17396410_SNP [dm3] 2L_17396410_SNP [dm6]	T	G	1.753e^-4	0.826	INTRON CLIP-190
3R	20618748	3R_20618748_SNP [dm3] 3R_24793026_SNP [dm6]	T	C	1.763e^-4	0.826	NON_SYNONYMOUS_CODING Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1251233	3L_1251233_SNP [dm3] 3L_1251233_SNP [dm6]	G	A	1.767e^-4	0.826	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20965769	2L_20965769_DEL [dm3] 2L_20965769_DEL [dm6]	TACTAGCTTTTAAGCATAAT...	T	1.769e^-4	0.826	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	18020821	2L_18020821_SNP [dm3] 2L_18020821_SNP [dm6]	G	A	1.779e^-4	0.826	INTRON rdo
3L	2523226	3L_2523226_DEL [dm3] 3L_2523226_DEL [dm6]	GGC	G	1.782e^-4	0.826	INTRON Spn
2L	9384264	2L_9384264_SNP [dm3] 2L_9384264_SNP [dm6]	G	A	1.794e^-4	0.826	INTRON Shawl
3R	3416688	3R_3416688_SNP [dm3] 3R_7590966_SNP [dm6]	T	C	1.800e^-4	0.826	INTRON CG34127
2R	8455691	2R_8455691_SNP [dm3] 2R_12568186_SNP [dm6]	A	G	1.801e^-4	0.826	NON_SYNONYMOUS_CODING Cyp301a1 DOWNSTREAM Ak6
3R	26309709	3R_26309709_SNP [dm3] 3R_30483987_SNP [dm6]	G	A	1.826e^-4	0.826	SYNONYMOUS_CODING PH4alphaEFB
2L	7005492	2L_7005492_SNP [dm3] 2L_7005492_SNP [dm6]	C	T	1.826e^-4	0.826	INTRON uif
3R	16763338	3R_16763338_SNP [dm3] 3R_20937616_SNP [dm6]	T	C	1.837e^-4	0.826	INTRON CG31191
3L	5681176	3L_5681176_SNP [dm3] 3L_5688076_SNP [dm6]	T	A	1.843e^-4	0.826	INTRON sif
2L	16506996	2L_16506996_SNP [dm3] 2L_16506996_SNP [dm6]	A	T	1.852e^-4	0.826	SYNONYMOUS_CODING Tpr2	TF binding site mE1_TFBS_cad
2R	6826918	2R_6826918_INS [dm3] 2R_10939413_INS [dm6]	G	CTCTTTAATT	1.859e^-4	0.826	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
2L	7005487	2L_7005487_DEL [dm3] 2L_7005487_DEL [dm6]	AG	A	1.861e^-4	0.826	INTRON uif
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	1.863e^-4	0.826	INTRON AstC-R1
2L	17330561	2L_17330561_SNP [dm3] 2L_17330561_SNP [dm6]	C	A	1.863e^-4	0.826	INTERGENIC
2R	4311341	2R_4311341_SNP [dm3] 2R_8423836_SNP [dm6]	A	G	1.863e^-4	0.826	INTRON CSN7
3L	3288523	3L_3288523_SNP [dm3] 3L_3288523_SNP [dm6]	G	C	1.898e^-4	0.826	INTRON CG12017
X	5810982	X_5810982_SNP [dm3] X_5916949_SNP [dm6]	A	T	1.904e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5902226	3R_5902226_DEL [dm3] 3R_10076504_DEL [dm6]	ACATGAA	A	1.908e^-4	0.826	INTERGENIC
2L	9905576	2L_9905576_SNP [dm3] 2L_9905576_SNP [dm6]	T	A	1.912e^-4	0.826	INTRON CG13124
X	5810903	X_5810903_SNP [dm3] X_5916870_SNP [dm6]	G	A	1.916e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5338951	X_5338951_SNP [dm3] X_5444918_SNP [dm6]	C	T	1.926e^-4	0.826	INTERGENIC
2R	6079545	2R_6079545_SNP [dm3] 2R_10192040_SNP [dm6]	G	C	1.929e^-4	0.826	UTR_5_PRIME KCNQ
3L	429160	3L_429160_SNP [dm3] 3L_429160_SNP [dm6]	G	A	1.930e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12123718	3L_12123718_SNP [dm3] 3L_12130618_SNP [dm6]	T	C	1.930e^-4	0.826	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	22935949	3R_22935949_SNP [dm3] 3R_27110227_SNP [dm6]	T	C	1.939e^-4	0.826	SYNONYMOUS_CODING gb EXON CR45209
3L	3796189	3L_3796189_SNP [dm3] 3L_3796189_SNP [dm6]	G	C	1.940e^-4	0.826	INTRON CG32264
X	8035999	X_8035999_SNP [dm3] X_8141966_SNP [dm6]	C	T	1.941e^-4	0.826	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8458808	2R_8458808_SNP [dm3] 2R_12571303_SNP [dm6]	T	A	1.946e^-4	0.826	UPSTREAM ClC-b INTRON stil
3R	16868730	3R_16868730_SNP [dm3] 3R_21043008_SNP [dm6]	C	T	1.954e^-4	0.826	UPSTREAM Dhc93AB INTERGENIC
3L	6299902	3L_6299902_SNP [dm3] 3L_6306802_SNP [dm6]	T	A	1.957e^-4	0.826	DOWNSTREAM CR45113 INTERGENIC
2L	15820299	2L_15820299_SNP [dm3] 2L_15820299_SNP [dm6]	T	A	1.957e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_run
3R	8575935	3R_8575935_SNP [dm3] 3R_12750213_SNP [dm6]	A	T	1.958e^-4	0.826	INTRON beat-Vc
3R	6599155	3R_6599155_SNP [dm3] 3R_10773433_SNP [dm6]	C	T	1.961e^-4	0.826	UTR_3_PRIME fau & 1 other INTRON CG45076
3R	7059439	3R_7059439_SNP [dm3] 3R_11233717_SNP [dm6]	A	C	1.962e^-4	0.826	INTRON Arfip	TF binding site mE1_TFBS_cad
3L	428958	3L_428958_SNP [dm3] 3L_428958_SNP [dm6]	A	G	1.976e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	20019322	2R_20019322_SNP [dm3] 2R_24131799_SNP [dm6]	C	T	1.976e^-4	0.826	UTR_5_PRIME tamo INTRON tamo
2L	17998472	2L_17998472_SNP [dm3] 2L_17998472_SNP [dm6]	A	C	1.981e^-4	0.826	INTERGENIC
2R	12014311	2R_12014311_SNP [dm3] 2R_16126806_SNP [dm6]	T	G	1.981e^-4	0.826	INTRON spin
2L	7964981	2L_7964981_SNP [dm3] 2L_7964981_SNP [dm6]	T	A	2.001e^-4	0.826	INTRON Snoo	TF binding site mE1_TFBS_inv
3R	24603167	3R_24603167_SNP [dm3] 3R_28777445_SNP [dm6]	G	A	2.002e^-4	0.826	EXON CR44952
3R	21326561	3R_21326561_SNP [dm3] 3R_25500839_SNP [dm6]	G	T	2.005e^-4	0.826	DOWNSTREAM CR43456 INTERGENIC
3L	3995051	3L_3995051_DEL [dm3] 3L_3995051_DEL [dm6]	ACAAAATATGATCAAAAGAT...	A	2.008e^-4	0.826	INTERGENIC
3R	21932525	3R_21932525_SNP [dm3] 3R_26106803_SNP [dm6]	C	T	2.015e^-4	0.826	UPSTREAM CG31324 INTERGENIC
X	7816167	X_7816167_SNP [dm3] X_7922134_SNP [dm6]	C	G	2.018e^-4	0.826	DOWNSTREAM CG10777 & 1 other INTERGENIC
3L	15899830	3L_15899830_SNP [dm3] 3L_15906730_SNP [dm6]	C	T	2.031e^-4	0.826	SYNONYMOUS_CODING sff
X	9793910	X_9793910_SNP [dm3] X_9899877_SNP [dm6]	A	G	2.032e^-4	0.826	UPSTREAM CG15249 INTERGENIC
X	9667042	X_9667042_SNP [dm3] X_9773009_SNP [dm6]	G	A	2.040e^-4	0.826	INTERGENIC
3L	3872860	3L_3872860_SNP [dm3] 3L_3872860_SNP [dm6]	A	T	2.041e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	8703739	X_8703739_SNP [dm3] X_8809706_SNP [dm6]	A	T	2.049e^-4	0.826	INTERGENIC
2R	17681660	2R_17681660_SNP [dm3] 2R_21794155_SNP [dm6]	G	A	2.051e^-4	0.826	INTERGENIC
2L	7005494	2L_7005494_DEL [dm3] 2L_7005494_DEL [dm6]	CT	C	2.053e^-4	0.826	INTRON uif
2L	3428200	2L_3428200_SNP [dm3] 2L_3428200_SNP [dm6]	C	A	2.057e^-4	0.826	INTERGENIC
2R	10313865	2R_10313865_SNP [dm3] 2R_14426360_SNP [dm6]	C	T	2.070e^-4	0.826	DOWNSTREAM phyl INTERGENIC
3L	2667737	3L_2667737_SNP [dm3] 3L_2667737_SNP [dm6]	A	G	2.073e^-4	0.826	INTRON Fife
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	2.077e^-4	0.826	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3L	16887954	3L_16887954_SNP [dm3] 3L_16894854_SNP [dm6]	G	T	2.083e^-4	0.826	INTRON Lmpt
3R	10963685	3R_10963685_SNP [dm3] 3R_15137963_SNP [dm6]	C	T	2.090e^-4	0.826	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15889744	3L_15889744_SNP [dm3] 3L_15896644_SNP [dm6]	G	T	2.095e^-4	0.826	INTRON pHCl
3L	4127895	3L_4127895_SNP [dm3] 3L_4127895_SNP [dm6]	C	A	2.097e^-4	0.826	INTRON ens
2L	19469257	2L_19469257_SNP [dm3] 2L_19469257_SNP [dm6]	C	A	2.097e^-4	0.826	DOWNSTREAM CR45723 EXON CR45722
3L	4758443	3L_4758443_SNP [dm3] 3L_4758443_SNP [dm6]	G	A	2.099e^-4	0.826	UTR_3_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	7818730	X_7818730_SNP [dm3] X_7924697_SNP [dm6]	A	C	2.102e^-4	0.826	UTR_3_PRIME CG10777
X	8036401	X_8036401_DEL [dm3] X_8142368_DEL [dm6]	GATA	G	2.109e^-4	0.826	UPSTREAM Smox DOWNSTREAM CG17982 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	20751759	X_20751759_SNP [dm3] X_20880732_SNP [dm6]	A	T	2.111e^-4	0.826	INTRON shakB
2L	18125933	2L_18125933_SNP [dm3] 2L_18125933_SNP [dm6]	A	T	2.111e^-4	0.826	UPSTREAM CG31785 INTRON CG5758
3L	9907340	3L_9907340_SNP [dm3] 3L_9914240_SNP [dm6]	G	A	2.116e^-4	0.826	INTRON CG34356
2L	5772663	2L_5772663_SNP [dm3] 2L_5772663_SNP [dm6]	C	T	2.119e^-4	0.826	UPSTREAM CG9171 INTRON CG9171
3R	18666133	3R_18666133_SNP [dm3] 3R_22840411_SNP [dm6]	A	T	2.122e^-4	0.826	INTERGENIC
2L	14181953	2L_14181953_SNP [dm3] 2L_14181953_SNP [dm6]	T	C	2.126e^-4	0.826	INTERGENIC
3L	1597431	3L_1597431_SNP [dm3] 3L_1597431_SNP [dm6]	G	A	2.135e^-4	0.826	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19332285	3R_19332285_SNP [dm3] 3R_23506563_SNP [dm6]	C	T	2.140e^-4	0.826	DOWNSTREAM CG34289 INTERGENIC
2L	2811767	2L_2811767_SNP [dm3] 2L_2811767_SNP [dm6]	A	G	2.142e^-4	0.826	UTR_3_PRIME daw UPSTREAM CG2964	TF binding site mE1_TFBS_cad
2R	20016162	2R_20016162_SNP [dm3] 2R_24128639_SNP [dm6]	T	A	2.146e^-4	0.826	INTRON tamo	TF binding site mE1_TFBS_chinmo
2R	3003919	2R_3003919_DEL [dm3] 2R_7116414_DEL [dm6]	GGT	G	2.156e^-4	0.826	INTRON esn	TF binding site mE1_TFBS_inv
2R	16692642	2R_16692642_SNP [dm3] 2R_20805137_SNP [dm6]	T	C	2.163e^-4	0.826	INTERGENIC
3R	21932670	3R_21932670_SNP [dm3] 3R_26106948_SNP [dm6]	T	A	2.173e^-4	0.826	UTR_5_PRIME CG31324
2L	15420134	2L_15420134_SNP [dm3] 2L_15420134_SNP [dm6]	C	T	2.178e^-4	0.826	INTERGENIC
2L	3059438	2L_3059438_SNP [dm3] 2L_3059438_SNP [dm6]	T	G	2.185e^-4	0.826	INTRON CG3523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	17287684	2L_17287684_SNP [dm3] 2L_17287684_SNP [dm6]	C	T	2.194e^-4	0.826	DOWNSTREAM CG15140 INTERGENIC
2L	17999632	2L_17999632_SNP [dm3] 2L_17999632_SNP [dm6]	A	C	2.199e^-4	0.826	INTERGENIC
X	5810987	X_5810987_INS [dm3] X_5916954_INS [dm6]	A	AA	2.203e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5810919	X_5810919_SNP [dm3] X_5916886_SNP [dm6]	T	A	2.207e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5810925	X_5810925_SNP [dm3] X_5916892_SNP [dm6]	T	A	2.208e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12842899	2L_12842899_SNP [dm3] 2L_12842899_SNP [dm6]	T	A	2.209e^-4	0.826	INTERGENIC
2R	6810498	2R_6810498_SNP [dm3] 2R_10922993_SNP [dm6]	C	T	2.213e^-4	0.826	INTERGENIC
2R	16335415	2R_16335415_SNP [dm3] 2R_20447910_SNP [dm6]	G	A	2.213e^-4	0.826	INTRON CG12484
3R	24364645	3R_24364645_SNP [dm3] 3R_28538923_SNP [dm6]	C	T	2.220e^-4	0.826	INTRON Ppn
3R	18378367	3R_18378367_SNP [dm3] 3R_22552645_SNP [dm6]	G	A	2.222e^-4	0.826	INTRON bond EXON CR44062
2R	6826912	2R_6826912_SNP [dm3] 2R_10939407_SNP [dm6]	C	A	2.225e^-4	0.826	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
X	7367612	X_7367612_SNP [dm3] X_7473579_SNP [dm6]	T	A	2.227e^-4	0.826	INTERGENIC
3L	18564319	3L_18564319_SNP [dm3] 3L_18571219_SNP [dm6]	G	A	2.235e^-4	0.826	INTRON AstC-R1
2L	18125910	2L_18125910_SNP [dm3] 2L_18125910_SNP [dm6]	C	A	2.237e^-4	0.826	UPSTREAM CG31785 INTRON CG5758
3R	16869168	3R_16869168_DEL [dm3] 3R_21043446_DEL [dm6]	TTTTCTACAT	T	2.238e^-4	0.826	UPSTREAM Dhc93AB & 1 other INTERGENIC
2L	7380269	2L_7380269_SNP [dm3] 2L_7380269_SNP [dm6]	G	A	2.242e^-4	0.826	SYNONYMOUS_CODING ninaC
3R	21815192	3R_21815192_SNP [dm3] 3R_25989470_SNP [dm6]	T	A	2.242e^-4	0.826	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3R	4945662	3R_4945662_SNP [dm3] 3R_9119940_SNP [dm6]	G	A	2.243e^-4	0.826	INTRON pum
2L	6075109	2L_6075109_DEL [dm3] 2L_6075109_DEL [dm6]	TTAAATGC	T	2.243e^-4	0.826	UPSTREAM CR43801 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	5465648	3L_5465648_SNP [dm3] 3L_5472548_SNP [dm6]	C	T	2.247e^-4	0.826	INTERGENIC
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	2.248e^-4	0.826	INTRON pHCl
3L	4029406	3L_4029406_SNP [dm3] 3L_4029406_SNP [dm6]	G	A	2.255e^-4	0.826	UPSTREAM Gr64c DOWNSTREAM Gr64a INTRON Gr64b & 1 other
3R	13351170	3R_13351170_SNP [dm3] 3R_17525448_SNP [dm6]	C	A	2.256e^-4	0.826	INTERGENIC
2L	18125935	2L_18125935_SNP [dm3] 2L_18125935_SNP [dm6]	C	A	2.261e^-4	0.826	UPSTREAM CG31785 INTRON CG5758
2L	10487414	2L_10487414_SNP [dm3] 2L_10487414_SNP [dm6]	C	T	2.262e^-4	0.826	NON_SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
X	5811335	X_5811335_SNP [dm3] X_5917302_SNP [dm6]	C	A	2.266e^-4	0.826	START_GAINED CG3726 UTR_5_PRIME CG3726 UPSTREAM CG3011	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16337358	3R_16337358_SNP [dm3] 3R_20511636_SNP [dm6]	A	C	2.267e^-4	0.826	INTRON CG4288	TF binding site mE1_TFBS_sbb
2R	10054271	2R_10054271_SNP [dm3] 2R_14166766_SNP [dm6]	A	G	2.274e^-4	0.826	UTR_3_PRIME CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14050808	2R_14050808_SNP [dm3] 2R_18163303_SNP [dm6]	C	T	2.281e^-4	0.826	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9333454	2L_9333454_SNP [dm3] 2L_9333454_SNP [dm6]	C	G	2.284e^-4	0.826	UPSTREAM Eaat1 INTERGENIC
3L	3822474	3L_3822474_SNP [dm3] 3L_3822474_SNP [dm6]	C	T	2.287e^-4	0.826	INTRON enc
3L	11422064	3L_11422064_SNP [dm3] 3L_11428964_SNP [dm6]	A	C	2.293e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13609562	3L_13609562_SNP [dm3] 3L_13616462_SNP [dm6]	C	G	2.296e^-4	0.826	INTRON bru-3
2L	20384139	2L_20384139_SNP [dm3] 2L_20384139_SNP [dm6]	C	A	2.300e^-4	0.826	INTERGENIC
X	5810907	X_5810907_INS [dm3] X_5916874_INS [dm6]	CC	TTTAA	2.303e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11671137	3L_11671137_SNP [dm3] 3L_11678037_SNP [dm6]	C	A	2.309e^-4	0.826	INTRON CG32085
3R	10966769	3R_10966769_SNP [dm3] 3R_15141047_SNP [dm6]	C	T	2.311e^-4	0.826	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3833065	3L_3833065_SNP [dm3] 3L_3833065_SNP [dm6]	T	A	2.318e^-4	0.826	SPLICE_SITE_REGION enc INTRON enc
3R	22502219	3R_22502219_SNP [dm3] 3R_26676497_SNP [dm6]	C	T	2.320e^-4	0.826	INTRON beat-VII	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	2589383	2L_2589383_SNP [dm3] 2L_2589383_SNP [dm6]	A	T	2.322e^-4	0.826	INTERGENIC
2L	17287628	2L_17287628_DEL [dm3] 2L_17287628_DEL [dm6]	ACA	A	2.323e^-4	0.826	UTR_3_PRIME CG15140
X	4044619	X_4044619_SNP [dm3] X_4150586_SNP [dm6]	G	T	2.326e^-4	0.826	INTRON Fas2
2R	10061765	2R_10061765_SNP [dm3] 2R_14174260_SNP [dm6]	A	C	2.327e^-4	0.826	UTR_5_PRIME cg UPSTREAM mRpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13439729	3R_13439729_SNP [dm3] 3R_17614007_SNP [dm6]	C	A	2.329e^-4	0.826	NON_SYNONYMOUS_CODING CG14327 DOWNSTREAM CG34281
2L	9390225	2L_9390225_SNP [dm3] 2L_9390225_SNP [dm6]	C	G	2.330e^-4	0.826	INTRON Shawl & 1 other	TF binding site mE1_TFBS_chinmo
2L	11702767	2L_11702767_SNP [dm3] 2L_11702767_SNP [dm6]	G	T	2.332e^-4	0.826	INTERGENIC
3L	3863638	3L_3863638_SNP [dm3] 3L_3863638_SNP [dm6]	G	A	2.337e^-4	0.826	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8125197	2R_8125197_SNP [dm3] 2R_12237692_SNP [dm6]	C	T	2.343e^-4	0.826	INTERGENIC
X	9794037	X_9794037_SNP [dm3] X_9900004_SNP [dm6]	A	G	2.343e^-4	0.826	UPSTREAM CG15249 INTERGENIC
2L	4823016	2L_4823016_SNP [dm3] 2L_4823016_SNP [dm6]	A	T	2.345e^-4	0.826	UTR_5_PRIME CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21383647	3R_21383647_SNP [dm3] 3R_25557925_SNP [dm6]	T	C	2.349e^-4	0.826	INTRON msi
2L	2313361	2L_2313361_SNP [dm3] 2L_2313361_SNP [dm6]	C	T	2.352e^-4	0.826	INTRON CG9967 & 1 other
2R	13814635	2R_13814635_SNP [dm3] 2R_17927130_SNP [dm6]	A	C	2.357e^-4	0.826	DOWNSTREAM Elk INTERGENIC
3L	458770	3L_458770_SNP [dm3] 3L_458770_SNP [dm6]	A	T	2.372e^-4	0.826	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13786184	2R_13786184_SNP [dm3] 2R_17898679_SNP [dm6]	A	C	2.378e^-4	0.826	INTRON Elk
2R	8947424	2R_8947424_SNP [dm3] 2R_13059919_SNP [dm6]	A	C	2.379e^-4	0.826	INTRON Drl-2
2R	13103681	2R_13103681_SNP [dm3] 2R_17216176_SNP [dm6]	G	A	2.381e^-4	0.826	UPSTREAM mbl INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12842873	2L_12842873_SNP [dm3] 2L_12842873_SNP [dm6]	T	A	2.387e^-4	0.826	DOWNSTREAM CR44971 INTERGENIC
3L	11223613	3L_11223613_SNP [dm3] 3L_11230513_SNP [dm6]	A	C	2.392e^-4	0.826	UTR_3_PRIME CG42671 DOWNSTREAM CG42671 & 1 other
2L	19441096	2L_19441096_SNP [dm3] 2L_19441096_SNP [dm6]	A	T	2.394e^-4	0.826	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9830182	X_9830182_SNP [dm3] X_9936149_SNP [dm6]	A	C	2.400e^-4	0.826	INTERGENIC
3R	16872100	3R_16872100_SNP [dm3] 3R_21046378_SNP [dm6]	T	A	2.406e^-4	0.826	NON_SYNONYMOUS_CODING CG31207 UPSTREAM CG31189	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14154440	X_14154440_SNP [dm3] X_14260407_SNP [dm6]	G	A	2.408e^-4	0.826	UPSTREAM CG1461 INTERGENIC
3L	3932232	3L_3932232_SNP [dm3] 3L_3932232_SNP [dm6]	T	C	2.409e^-4	0.826	INTRON Eip63F-1
X	18384260	X_18384260_SNP [dm3] X_18490227_SNP [dm6]	C	T	2.409e^-4	0.826	UPSTREAM CG15046 DOWNSTREAM CG15044 INTERGENIC
2R	6825255	2R_6825255_SNP [dm3] 2R_10937750_SNP [dm6]	G	T	2.416e^-4	0.826	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12179505	2L_12179505_SNP [dm3] 2L_12179505_SNP [dm6]	C	G	2.423e^-4	0.826	INTRON aret
3R	8062041	3R_8062041_SNP [dm3] 3R_12236319_SNP [dm6]	G	A	2.424e^-4	0.826	SYNONYMOUS_CODING Cyp313a2 DOWNSTREAM Cyp313a3
2R	10054255	2R_10054255_SNP [dm3] 2R_14166750_SNP [dm6]	A	T	2.424e^-4	0.826	UTR_3_PRIME CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15107617	3L_15107617_DEL [dm3] 3L_15114517_DEL [dm6]	TA	T	2.429e^-4	0.826	INTRON CG13458
3R	22575124	3R_22575124_SNP [dm3] 3R_26749402_SNP [dm6]	C	A	2.430e^-4	0.826	INTERGENIC
3R	22574873	3R_22574873_SNP [dm3] 3R_26749151_SNP [dm6]	A	T	2.435e^-4	0.826	INTERGENIC
3L	12874930	3L_12874930_SNP [dm3] 3L_12881830_SNP [dm6]	G	A	2.440e^-4	0.826	INTERGENIC
X	18384204	X_18384204_SNP [dm3] X_18490171_SNP [dm6]	A	C	2.446e^-4	0.826	UPSTREAM CG15046 INTERGENIC
2L	17328400	2L_17328400_SNP [dm3] 2L_17328400_SNP [dm6]	G	A	2.446e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16284268	2R_16284268_SNP [dm3] 2R_20396763_SNP [dm6]	T	C	2.459e^-4	0.826	INTERGENIC
2L	7379212	2L_7379212_SNP [dm3] 2L_7379212_SNP [dm6]	C	A	2.470e^-4	0.826	SYNONYMOUS_CODING ninaC
2R	10116199	2R_10116199_SNP [dm3] 2R_14228694_SNP [dm6]	G	T	2.490e^-4	0.826	SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	904452	X_904452_SNP [dm3] X_1010419_SNP [dm6]	T	C	2.493e^-4	0.826	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	16760728	2R_16760728_SNP [dm3] 2R_20873223_SNP [dm6]	A	C	2.501e^-4	0.826	INTRON Ipk1	TF binding site mE1_TFBS_cad
2L	22037424	2L_22037424_SNP [dm3] 2L_22037424_SNP [dm6]	T	A	2.503e^-4	0.826	UPSTREAM CG41434 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13241367	3L_13241367_SNP [dm3] 3L_13248267_SNP [dm6]	C	T	2.506e^-4	0.826	SYNONYMOUS_CODING CG32119 INTRON caps
2R	18501640	2R_18501640_SNP [dm3] 2R_22614135_SNP [dm6]	A	C	2.509e^-4	0.826	UPSTREAM CG33143 & 1 other INTERGENIC
3R	3957107	3R_3957107_SNP [dm3] 3R_8131385_SNP [dm6]	T	A	2.510e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14093433	X_14093433_SNP [dm3] X_14199400_SNP [dm6]	C	T	2.512e^-4	0.826	SYNONYMOUS_CODING yl UPSTREAM mir-4917 & 1 other	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15891780	2R_15891780_SNP [dm3] 2R_20004275_SNP [dm6]	G	A	2.519e^-4	0.826	SYNONYMOUS_CODING CG16898
3R	20216029	3R_20216029_SNP [dm3] 3R_24390307_SNP [dm6]	T	C	2.519e^-4	0.826	NON_SYNONYMOUS_CODING CG5768 UPSTREAM CG13615
3L	5306407	3L_5306407_DEL [dm3] 3L_5313307_DEL [dm6]	AA	A	2.521e^-4	0.826	INTERGENIC
2L	18125763	2L_18125763_DEL [dm3] 2L_18125763_DEL [dm6]	CATACTTTGTTC...	C	2.523e^-4	0.826	UPSTREAM CG31785 INTRON CG5758
2R	6827394	2R_6827394_SNP [dm3] 2R_10939889_SNP [dm6]	G	T	2.536e^-4	0.826	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	21419152	3R_21419152_SNP [dm3] 3R_25593430_SNP [dm6]	T	A	2.539e^-4	0.826	INTRON msi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16692920	3R_16692920_SNP [dm3] 3R_20867198_SNP [dm6]	A	T	2.541e^-4	0.826	UPSTREAM CG3822 INTERGENIC
2L	2418168	2L_2418168_SNP [dm3] 2L_2418168_SNP [dm6]	A	T	2.551e^-4	0.826	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3L	1595661	3L_1595661_SNP [dm3] 3L_1595661_SNP [dm6]	A	C	2.552e^-4	0.826	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21364027	3R_21364027_SNP [dm3] 3R_25538305_SNP [dm6]	C	T	2.554e^-4	0.826	INTRON msi
2R	14623205	2R_14623205_SNP [dm3] 2R_18735700_SNP [dm6]	A	G	2.554e^-4	0.826	INTRON Hs3st-A
2L	13703822	2L_13703822_SNP [dm3] 2L_13703822_SNP [dm6]	T	G	2.559e^-4	0.826	INTRON CG31814
2R	17395887	2R_17395887_SNP [dm3] 2R_21508382_SNP [dm6]	C	T	2.562e^-4	0.826	INTRON MESK2
2L	17998479	2L_17998479_SNP [dm3] 2L_17998479_SNP [dm6]	G	T	2.563e^-4	0.826	INTERGENIC
3R	14931745	3R_14931745_SNP [dm3] 3R_19106023_SNP [dm6]	G	T	2.563e^-4	0.826	INTRON CG6040
3L	13383563	3L_13383563_SNP [dm3] 3L_13390463_SNP [dm6]	C	T	2.563e^-4	0.826	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16100112	2R_16100112_SNP [dm3] 2R_20212607_SNP [dm6]	A	G	2.565e^-4	0.826	UTR_5_PRIME CG16894
3R	26705672	3R_26705672_SNP [dm3] 3R_30879950_SNP [dm6]	A	T	2.565e^-4	0.826	INTRON CG12071	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23031168	3R_23031168_SNP [dm3] 3R_27205446_SNP [dm6]	T	C	2.572e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
X	9795287	X_9795287_SNP [dm3] X_9901254_SNP [dm6]	A	T	2.575e^-4	0.826	INTERGENIC
X	7470685	X_7470685_SNP [dm3] X_7576652_SNP [dm6]	C	A	2.583e^-4	0.826	UTR_3_PRIME CG11369	regulatory region REDfly_CRMs
X	11068133	X_11068133_SNP [dm3] X_11174100_SNP [dm6]	A	T	2.590e^-4	0.826	INTERGENIC
2L	12833452	2L_12833452_SNP [dm3] 2L_12833452_SNP [dm6]	G	A	2.593e^-4	0.826	INTERGENIC
2R	14501447	2R_14501447_SNP [dm3] 2R_18613942_SNP [dm6]	C	T	2.593e^-4	0.826	SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20949940	2R_20949940_INS [dm3] 2R_25062417_INS [dm6]	C	CCAGTCGC	2.598e^-4	0.826	INTRON gsb	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20012975	2R_20012975_SNP [dm3] 2R_24125452_SNP [dm6]	T	A	2.605e^-4	0.826	UTR_5_PRIME CG43777 & 1 other UTR_3_PRIME CG43775	TF binding site mE1_TFBS_cad
X	5810927	X_5810927_MNP [dm3] X_5916894_MNP [dm6]	TAC	AGT	2.605e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12744149	X_12744149_DEL [dm3] X_12850116_DEL [dm6]	TATATAAAATTGGCG...	A	2.614e^-4	0.826	INTRON Pde9
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	2.618e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12203510	X_12203510_SNP [dm3] X_12309477_SNP [dm6]	A	G	2.635e^-4	0.826	INTRON Ten-a
3R	16692879	3R_16692879_INS [dm3] 3R_20867157_INS [dm6]	A	AA	2.637e^-4	0.826	UPSTREAM CG3822 INTERGENIC
X	12203690	X_12203690_SNP [dm3] X_12309657_SNP [dm6]	A	T	2.639e^-4	0.826	INTRON Ten-a
X	5810914	X_5810914_SNP [dm3] X_5916881_SNP [dm6]	T	G	2.639e^-4	0.826	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17630176	3R_17630176_SNP [dm3] 3R_21804454_SNP [dm6]	T	A	2.644e^-4	0.826	UTR_5_PRIME CASK INTRON CASK	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9793901	X_9793901_SNP [dm3] X_9899868_SNP [dm6]	C	T	2.650e^-4	0.826	UPSTREAM CG15249 INTERGENIC
2L	13584030	2L_13584030_SNP [dm3] 2L_13584030_SNP [dm6]	G	C	2.652e^-4	0.826	DOWNSTREAM CR44973 INTRON kuz
X	21110391	X_21110391_SNP [dm3] X_21239364_SNP [dm6]	A	T	2.652e^-4	0.826	INTRON CG32521
3R	20794632	3R_20794632_SNP [dm3] 3R_24968910_SNP [dm6]	A	G	2.653e^-4	0.826	INTERGENIC
3L	3854684	3L_3854684_SNP [dm3] 3L_3854684_SNP [dm6]	C	T	2.653e^-4	0.826	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21335613	2L_21335613_SNP [dm3] 2L_21335613_SNP [dm6]	G	T	2.677e^-4	0.828	INTRON dimm
2L	2509304	2L_2509304_SNP [dm3] 2L_2509304_SNP [dm6]	G	T	2.679e^-4	0.828	INTERGENIC
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	2.693e^-4	0.828	INTERGENIC
2L	20318709	2L_20318709_SNP [dm3] 2L_20318709_SNP [dm6]	G	A	2.696e^-4	0.828	INTRON spir
2R	5670215	2R_5670215_SNP [dm3] 2R_9782710_SNP [dm6]	A	T	2.699e^-4	0.828	INTRON CG1688	TF binding site mE1_TFBS_inv
3R	19072292	3R_19072292_SNP [dm3] 3R_23246570_SNP [dm6]	T	C	2.701e^-4	0.828	INTRON CG4467
3R	16671005	3R_16671005_SNP [dm3] 3R_20845283_SNP [dm6]	A	T	2.709e^-4	0.828	DOWNSTREAM CG15695 INTERGENIC
2L	9905664	2L_9905664_SNP [dm3] 2L_9905664_SNP [dm6]	T	A	2.710e^-4	0.828	INTRON CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	606611	2L_606611_SNP [dm3] 2L_606611_SNP [dm6]	C	T	2.712e^-4	0.828	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4138700	2L_4138700_SNP [dm3] 2L_4138700_SNP [dm6]	A	T	2.712e^-4	0.828	INTERGENIC
3R	21410597	3R_21410597_SNP [dm3] 3R_25584875_SNP [dm6]	C	T	2.715e^-4	0.828	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13500433	2L_13500433_SNP [dm3] 2L_13500433_SNP [dm6]	A	G	2.717e^-4	0.828	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	12941422	X_12941422_SNP [dm3] X_13047389_SNP [dm6]	G	A	2.720e^-4	0.828	INTRON rad
3R	17786971	3R_17786971_SNP [dm3] 3R_21961249_SNP [dm6]	T	A	2.721e^-4	0.828	INTRON Eip93F
X	5810904	X_5810904_SNP [dm3] X_5916871_SNP [dm6]	C	A	2.730e^-4	0.83	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5685285	3R_5685285_SNP [dm3] 3R_9859563_SNP [dm6]	C	T	2.738e^-4	0.831	INTRON Teh1
2L	16510707	2L_16510707_SNP [dm3] 2L_16510707_SNP [dm6]	C	A	2.743e^-4	0.831	NON_SYNONYMOUS_CODING CG5953	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19137973	3R_19137973_SNP [dm3] 3R_23312251_SNP [dm6]	A	G	2.758e^-4	0.832	INTRON pnt
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	2.759e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15389227	2L_15389227_INS [dm3] 2L_15389227_INS [dm6]	A	AACATTTC	2.778e^-4	0.832	INTERGENIC
2L	9820071	2L_9820071_SNP [dm3] 2L_9820071_SNP [dm6]	C	T	2.780e^-4	0.832	INTRON nAChRalpha6
3L	1934772	3L_1934772_SNP [dm3] 3L_1934772_SNP [dm6]	T	A	2.797e^-4	0.832	INTRON CG5687
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.804e^-4	0.832	INTERGENIC
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	2.811e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	3003924	2R_3003924_SNP [dm3] 2R_7116419_SNP [dm6]	C	T	2.813e^-4	0.832	INTRON esn	TF binding site mE1_TFBS_inv
3R	13000134	3R_13000134_SNP [dm3] 3R_17174412_SNP [dm6]	T	A	2.822e^-4	0.832	INTRON Mur89F
2R	15910358	2R_15910358_SNP [dm3] 2R_20022853_SNP [dm6]	C	A	2.832e^-4	0.832	INTERGENIC
2R	9488734	2R_9488734_SNP [dm3] 2R_13601229_SNP [dm6]	G	T	2.838e^-4	0.832	UPSTREAM CG43058 INTERGENIC
3R	20203509	3R_20203509_DEL [dm3] 3R_24377787_DEL [dm6]	TT	T	2.844e^-4	0.832	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18125877	2L_18125877_INS [dm3] 2L_18125877_INS [dm6]	T	TT	2.844e^-4	0.832	UPSTREAM CG31785 INTRON CG5758
3L	4269409	3L_4269409_SNP [dm3] 3L_4269409_SNP [dm6]	A	G	2.850e^-4	0.832	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10486112	2L_10486112_SNP [dm3] 2L_10486112_SNP [dm6]	C	A	2.855e^-4	0.832	DOWNSTREAM Grip75 INTRON CG7456
2L	7558052	2L_7558052_SNP [dm3] 2L_7558052_SNP [dm6]	C	A	2.865e^-4	0.832	INTRON RapGAP1
3R	23254300	3R_23254300_SNP [dm3] 3R_27428578_SNP [dm6]	G	T	2.865e^-4	0.832	INTRON side
3L	18561702	3L_18561702_SNP [dm3] 3L_18568602_SNP [dm6]	G	A	2.874e^-4	0.832	INTRON AstC-R1
3L	2434397	3L_2434397_DEL [dm3] 3L_2434397_DEL [dm6]	GT	G	2.879e^-4	0.832	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	2.879e^-4	0.832	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3L	2523792	3L_2523792_SNP [dm3] 3L_2523792_SNP [dm6]	A	T	2.889e^-4	0.832	INTRON Spn
X	9795241	X_9795241_SNP [dm3] X_9901208_SNP [dm6]	A	G	2.894e^-4	0.832	INTERGENIC
3R	16872520	3R_16872520_SNP [dm3] 3R_21046798_SNP [dm6]	C	T	2.900e^-4	0.832	NON_SYNONYMOUS_CODING CG31207 UPSTREAM CG31189 DOWNSTREAM CG7079
2R	20142343	2R_20142343_SNP [dm3] 2R_24254820_SNP [dm6]	T	C	2.904e^-4	0.832	UTR_3_PRIME nord UPSTREAM CG13575
2L	14403373	2L_14403373_SNP [dm3] 2L_14403373_SNP [dm6]	G	A	2.906e^-4	0.832	INTRON elB	regulatory region REDfly_CRMs
2R	10405925	2R_10405925_SNP [dm3] 2R_14518420_SNP [dm6]	C	G	2.907e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8386708	3L_8386708_SNP [dm3] 3L_8393608_SNP [dm6]	G	A	2.921e^-4	0.832	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna
2R	10405770	2R_10405770_SNP [dm3] 2R_14518265_SNP [dm6]	A	T	2.937e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14129739	X_14129739_SNP [dm3] X_14235706_SNP [dm6]	C	A	2.937e^-4	0.832	NON_SYNONYMOUS_CODING Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11182512	3L_11182512_DEL [dm3] 3L_11189412_DEL [dm6]	CCCACCAGAAC...	C	2.939e^-4	0.832	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
X	6844576	X_6844576_SNP [dm3] X_6950543_SNP [dm6]	G	A	2.944e^-4	0.832	INTRON CG14431 EXON CR4575
3R	10955407	3R_10955407_SNP [dm3] 3R_15129685_SNP [dm6]	G	T	2.945e^-4	0.832	INTRON CG42788
3R	25612312	3R_25612312_INS [dm3] 3R_29786590_INS [dm6]	A	AAAGTAACTGTTTGCA...	2.947e^-4	0.832	INTRON kay
2L	22000409	2L_22000409_SNP [dm3] 2L_22000409_SNP [dm6]	G	T	2.949e^-4	0.832	UPSTREAM CR44916 EXON CR44916
3L	1098269	3L_1098269_SNP [dm3] 3L_1098269_SNP [dm6]	A	G	2.958e^-4	0.832	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19478211	2R_19478211_SNP [dm3] 2R_23590688_SNP [dm6]	A	C	2.967e^-4	0.832	INTRON apt
X	18384103	X_18384103_SNP [dm3] X_18490070_SNP [dm6]	C	T	2.967e^-4	0.832	UPSTREAM CG15046 INTERGENIC
2L	13749023	2L_13749023_SNP [dm3] 2L_13749023_SNP [dm6]	C	T	2.979e^-4	0.832	INTRON CR44846 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	9026796	3R_9026796_SNP [dm3] 3R_13201074_SNP [dm6]	T	C	2.986e^-4	0.832	INTERGENIC
2R	1826545	2R_1826545_SNP [dm3] 2R_5939040_SNP [dm6]	C	T	2.986e^-4	0.832	DOWNSTREAM CR44126 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8703728	X_8703728_INS [dm3] X_8809695_INS [dm6]	C	AAA	3.000e^-4	0.832	INTERGENIC
3R	16920921	3R_16920921_SNP [dm3] 3R_21095199_SNP [dm6]	A	C	3.013e^-4	0.832	INTRON RhoGAP93B EXON CR44178	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12162308	X_12162308_SNP [dm3] X_12268275_SNP [dm6]	C	A	3.014e^-4	0.832	INTRON Ten-a
3L	5274160	3L_5274160_SNP [dm3] 3L_5281060_SNP [dm6]	G	T	3.022e^-4	0.832	INTERGENIC
X	9184852	X_9184852_SNP [dm3] X_9290819_SNP [dm6]	T	G	3.028e^-4	0.832	INTRON lz	TF binding site mE1_TFBS_Kr
3L	2839213	3L_2839213_SNP [dm3] 3L_2839213_SNP [dm6]	A	T	3.033e^-4	0.832	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
3L	19616117	3L_19616117_SNP [dm3] 3L_19623017_SNP [dm6]	G	T	3.038e^-4	0.832	NON_SYNONYMOUS_CODING ms_3_76Cc
2R	5540104	2R_5540104_SNP [dm3] 2R_9652599_SNP [dm6]	G	C	3.066e^-4	0.832	INTRON Mmp2
2L	16490857	2L_16490857_SNP [dm3] 2L_16490857_SNP [dm6]	C	G	3.067e^-4	0.832	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
3R	5685196	3R_5685196_SNP [dm3] 3R_9859474_SNP [dm6]	G	A	3.071e^-4	0.832	INTRON Teh1
3L	2434404	3L_2434404_SNP [dm3] 3L_2434404_SNP [dm6]	T	A	3.071e^-4	0.832	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18384205	X_18384205_SNP [dm3] X_18490172_SNP [dm6]	G	C	3.073e^-4	0.832	UPSTREAM CG15046 INTERGENIC
3L	2313529	3L_2313529_SNP [dm3] 3L_2313529_SNP [dm6]	T	G	3.077e^-4	0.832	INTERGENIC
2R	20011616	2R_20011616_SNP [dm3] 2R_24124093_SNP [dm6]	C	T	3.088e^-4	0.832	NON_SYNONYMOUS_CODING CG43777 UTR_3_PRIME CG43776 & 1 other DOWNSTREAM CG3257	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9951590	2R_9951590_SNP [dm3] 2R_14064085_SNP [dm6]	T	C	3.088e^-4	0.832	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4408888	3L_4408888_SNP [dm3] 3L_4408888_SNP [dm6]	T	G	3.092e^-4	0.832	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	16763626	3R_16763626_SNP [dm3] 3R_20937904_SNP [dm6]	C	G	3.094e^-4	0.832	INTRON CG31191
2L	12842928	2L_12842928_SNP [dm3] 2L_12842928_SNP [dm6]	A	T	3.094e^-4	0.832	INTERGENIC
2L	22043672	2L_22043672_SNP [dm3] 2L_22043672_SNP [dm6]	C	T	3.099e^-4	0.832	NON_SYNONYMOUS_CODING CG31601
X	18798207	X_18798207_SNP [dm3] X_18904174_SNP [dm6]	C	G	3.101e^-4	0.832	INTRON CG7378
3L	10449191	3L_10449191_SNP [dm3] 3L_10456091_SNP [dm6]	T	C	3.103e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14566913	2R_14566913_SNP [dm3] 2R_18679408_SNP [dm6]	G	T	3.106e^-4	0.832	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_sens
2L	10961463	2L_10961463_SNP [dm3] 2L_10961463_SNP [dm6]	C	T	3.109e^-4	0.832	INTRON dpr2
3L	12466711	3L_12466711_SNP [dm3] 3L_12473611_SNP [dm6]	C	T	3.116e^-4	0.832	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663
X	11951161	X_11951161_SNP [dm3] X_12057128_SNP [dm6]	A	G	3.141e^-4	0.832	UPSTREAM Uch-L5R INTRON CR43960 & 1 other
3R	24605442	3R_24605442_SNP [dm3] 3R_28779720_SNP [dm6]	G	A	3.142e^-4	0.832	INTERGENIC
2R	8125113	2R_8125113_SNP [dm3] 2R_12237608_SNP [dm6]	G	A	3.142e^-4	0.832	INTERGENIC
2L	4176727	2L_4176727_SNP [dm3] 2L_4176727_SNP [dm6]	C	A	3.148e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_inv
X	500248	X_500248_SNP [dm3] X_606215_SNP [dm6]	A	G	3.148e^-4	0.832	INTRON CG13366
3L	2839236	3L_2839236_INS [dm3] 3L_2839236_INS [dm6]	T	TATTT	3.151e^-4	0.832	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
3L	5779209	3L_5779209_SNP [dm3] 3L_5786109_SNP [dm6]	T	C	3.152e^-4	0.832	INTRON Cralbp
2R	10405768	2R_10405768_SNP [dm3] 2R_14518263_SNP [dm6]	C	T	3.177e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16327394	3L_16327394_SNP [dm3] 3L_16334294_SNP [dm6]	A	G	3.187e^-4	0.832	DOWNSTREAM CG13056 INTERGENIC
3R	23030980	3R_23030980_SNP [dm3] 3R_27205258_SNP [dm6]	A	G	3.187e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
2L	14181954	2L_14181954_SNP [dm3] 2L_14181954_SNP [dm6]	T	C	3.192e^-4	0.832	INTERGENIC
X	9676545	X_9676545_SNP [dm3] X_9782512_SNP [dm6]	T	C	3.218e^-4	0.832	UPSTREAM CG32698 DOWNSTREAM CG1354 INTERGENIC
3R	24723654	3R_24723654_SNP [dm3] 3R_28897932_SNP [dm6]	T	C	3.218e^-4	0.832	INTRON Doa	TF binding site BDTNP1_TFBS_twi
3L	1934850	3L_1934850_SNP [dm3] 3L_1934850_SNP [dm6]	A	T	3.222e^-4	0.832	SYNONYMOUS_CODING CG5687
3L	18371822	3L_18371822_SNP [dm3] 3L_18378722_SNP [dm6]	A	G	3.230e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9099139	2R_9099139_SNP [dm3] 2R_13211634_SNP [dm6]	G	A	3.231e^-4	0.832	SYNONYMOUS_CODING CG34235 START_GAINED CG30058 & 1 other UTR_5_PRIME CG30058 & 1 other UPSTREAM CG34312 & 1 other DOWNSTREAM AQP
3L	16360085	3L_16360085_SNP [dm3] 3L_16366985_SNP [dm6]	G	A	3.232e^-4	0.832	SYNONYMOUS_CODING Cpr72Ec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4138709	2L_4138709_SNP [dm3] 2L_4138709_SNP [dm6]	T	C	3.232e^-4	0.832	INTERGENIC
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	3.233e^-4	0.832	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	12503823	2L_12503823_SNP [dm3] 2L_12503823_SNP [dm6]	A	T	3.233e^-4	0.832	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11702803	2L_11702803_SNP [dm3] 2L_11702803_SNP [dm6]	G	A	3.234e^-4	0.832	INTERGENIC
2R	8459043	2R_8459043_SNP [dm3] 2R_12571538_SNP [dm6]	C	A	3.235e^-4	0.832	SYNONYMOUS_CODING stil UPSTREAM ClC-b
3L	7845387	3L_7845387_SNP [dm3] 3L_7852287_SNP [dm6]	G	A	3.238e^-4	0.832	INTRON Pdp1
2L	2420414	2L_2420414_SNP [dm3] 2L_2420414_SNP [dm6]	T	C	3.238e^-4	0.832	UPSTREAM CG34447 & 1 other INTERGENIC
X	6657635	X_6657635_SNP [dm3] X_6763602_SNP [dm6]	G	A	3.239e^-4	0.832	SYNONYMOUS_CODING CG14438	TF binding site mE1_TFBS_sens
2R	12477123	2R_12477123_SNP [dm3] 2R_16589618_SNP [dm6]	C	A	3.246e^-4	0.832	UTR_3_PRIME CG8306 UPSTREAM CG8311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12477124	2R_12477124_SNP [dm3] 2R_16589619_SNP [dm6]	T	C	3.246e^-4	0.832	UTR_3_PRIME CG8306 UPSTREAM CG8311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18095220	2R_18095220_SNP [dm3] 2R_22207715_SNP [dm6]	G	C	3.248e^-4	0.832	SYNONYMOUS_CODING CG3290 DOWNSTREAM CG3264	TF binding site mE1_TFBS_HSA
X	12744200	X_12744200_SNP [dm3] X_12850167_SNP [dm6]	A	G	3.267e^-4	0.832	INTRON Pde9
2R	10320268	2R_10320268_SNP [dm3] 2R_14432763_SNP [dm6]	C	G	3.269e^-4	0.832	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14346287	3L_14346287_SNP [dm3] 3L_14353187_SNP [dm6]	G	A	3.274e^-4	0.832	INTRON fz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21815126	3R_21815126_SNP [dm3] 3R_25989404_SNP [dm6]	C	T	3.277e^-4	0.832	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3R	24576446	3R_24576446_SNP [dm3] 3R_28750724_SNP [dm6]	T	C	3.282e^-4	0.832	SYNONYMOUS_CODING CG10000	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18384377	X_18384377_INS [dm3] X_18490344_INS [dm6]	A	AAGCCCACAGCCATCAGCTT...	3.291e^-4	0.832	UPSTREAM CG15046 DOWNSTREAM CG15044 INTERGENIC
2L	14021532	2L_14021532_SNP [dm3] 2L_14021532_SNP [dm6]	A	T	3.292e^-4	0.832	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13875217	X_13875217_SNP [dm3] X_13981184_SNP [dm6]	A	C	3.292e^-4	0.832	INTRON mamo
2L	14286336	2L_14286336_SNP [dm3] 2L_14286336_SNP [dm6]	C	T	3.292e^-4	0.832	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_chinmo
2L	14021524	2L_14021524_SNP [dm3] 2L_14021524_SNP [dm6]	A	C	3.296e^-4	0.832	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4003278	3L_4003278_SNP [dm3] 3L_4003278_SNP [dm6]	T	A	3.299e^-4	0.832	UPSTREAM CG14985 INTERGENIC
3L	2313573	3L_2313573_SNP [dm3] 3L_2313573_SNP [dm6]	T	A	3.303e^-4	0.832	INTERGENIC
2R	6435259	2R_6435259_SNP [dm3] 2R_10547754_SNP [dm6]	C	T	3.303e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26309739	3R_26309739_SNP [dm3] 3R_30484017_SNP [dm6]	A	G	3.307e^-4	0.832	SYNONYMOUS_CODING PH4alphaEFB
3L	4735335	3L_4735335_SNP [dm3] 3L_4735335_SNP [dm6]	C	T	3.315e^-4	0.832	INTRON RhoGEF64C
2R	14741897	2R_14741897_SNP [dm3] 2R_18854392_SNP [dm6]	A	G	3.323e^-4	0.832	SYNONYMOUS_CODING Jheh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26592657	3R_26592657_SNP [dm3] 3R_30766935_SNP [dm6]	G	A	3.324e^-4	0.832	INTRON zfh1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10108819	2R_10108819_SNP [dm3] 2R_14221314_SNP [dm6]	G	A	3.333e^-4	0.832	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10108826	2R_10108826_SNP [dm3] 2R_14221321_SNP [dm6]	C	A	3.333e^-4	0.832	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	9779313	2R_9779313_SNP [dm3] 2R_13891808_SNP [dm6]	A	C	3.333e^-4	0.832	SYNONYMOUS_CODING shot INTRON shot
2R	17426248	2R_17426248_SNP [dm3] 2R_21538743_SNP [dm6]	G	A	3.334e^-4	0.832	NON_SYNONYMOUS_CODING CG33226 UPSTREAM CG30287 DOWNSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2406491	2L_2406491_SNP [dm3] 2L_2406491_SNP [dm6]	C	T	3.337e^-4	0.832	SYNONYMOUS_CODING VGlut	TF binding site mE1_TFBS_inv
3R	13701436	3R_13701436_SNP [dm3] 3R_17875714_SNP [dm6]	T	A	3.341e^-4	0.832	INTRON Rim
X	14655142	X_14655142_SNP [dm3] X_14761109_SNP [dm6]	T	G	3.343e^-4	0.832	INTRON CG15890
3R	9674049	3R_9674049_SNP [dm3] 3R_13848327_SNP [dm6]	G	A	3.344e^-4	0.832	INTERGENIC
2L	14047847	2L_14047847_SNP [dm3] 2L_14047847_SNP [dm6]	T	G	3.354e^-4	0.832	NON_SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26464082	3R_26464082_DEL [dm3] 3R_30638360_DEL [dm6]	AT	A	3.356e^-4	0.832	INTERGENIC
3L	8915776	3L_8915776_SNP [dm3] 3L_8922676_SNP [dm6]	A	G	3.357e^-4	0.832	INTRON Tsp66E
2L	17308165	2L_17308165_SNP [dm3] 2L_17308165_SNP [dm6]	A	G	3.359e^-4	0.832	INTERGENIC
3R	21932524	3R_21932524_SNP [dm3] 3R_26106802_SNP [dm6]	C	T	3.361e^-4	0.832	UPSTREAM CG31324 INTERGENIC
3L	13383610	3L_13383610_SNP [dm3] 3L_13390510_SNP [dm6]	T	C	3.362e^-4	0.832	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	520585	2L_520585_SNP [dm3] 2L_520585_SNP [dm6]	A	G	3.364e^-4	0.832	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	16661473	3L_16661473_SNP [dm3] 3L_16668373_SNP [dm6]	T	G	3.365e^-4	0.832	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8014291	X_8014291_SNP [dm3] X_8120258_SNP [dm6]	G	A	3.374e^-4	0.832	SYNONYMOUS_CODING CG2260	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10574659	2R_10574659_SNP [dm3] 2R_14687154_SNP [dm6]	A	C	3.382e^-4	0.832	INTRON mspo
3R	21822107	3R_21822107_SNP [dm3] 3R_25996385_SNP [dm6]	C	T	3.390e^-4	0.832	NON_SYNONYMOUS_CODING CG43116 DOWNSTREAM Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20337992	2L_20337992_INS [dm3] 2L_20337992_INS [dm6]	A	AAATTTGAGTCCATTGTAGA...	3.390e^-4	0.832	INTRON spir	TF binding site mE1_TFBS_inv
2R	13081057	2R_13081057_SNP [dm3] 2R_17193552_SNP [dm6]	T	C	3.404e^-4	0.832	INTERGENIC
2L	18130942	2L_18130942_SNP [dm3] 2L_18130942_SNP [dm6]	T	C	3.412e^-4	0.832	SYNONYMOUS_CODING kel UTR_3_PRIME kel
3L	678720	3L_678720_SNP [dm3] 3L_678720_SNP [dm6]	T	C	3.413e^-4	0.832	SYNONYMOUS_CODING CG17129	TF binding site mE1_TFBS_sens
3R	15108766	3R_15108766_SNP [dm3] 3R_19283044_SNP [dm6]	A	G	3.417e^-4	0.832	INTERGENIC
X	12744167	X_12744167_SNP [dm3] X_12850134_SNP [dm6]	G	A	3.421e^-4	0.832	INTRON Pde9
2L	15389065	2L_15389065_SNP [dm3] 2L_15389065_SNP [dm6]	T	C	3.424e^-4	0.832	INTERGENIC
2L	5734538	2L_5734538_SNP [dm3] 2L_5734538_SNP [dm6]	T	A	3.425e^-4	0.832	INTRON CG11030 & 1 other
2R	9748608	2R_9748608_SNP [dm3] 2R_13861103_SNP [dm6]	C	T	3.426e^-4	0.832	SYNONYMOUS_CODING CG16935 UPSTREAM CG13344 DOWNSTREAM Uba3	TF binding site mE1_TFBS_cad
2L	16490819	2L_16490819_SNP [dm3] 2L_16490819_SNP [dm6]	T	G	3.431e^-4	0.832	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	14021521	2L_14021521_SNP [dm3] 2L_14021521_SNP [dm6]	T	G	3.431e^-4	0.832	DOWNSTREAM CR45352 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21506127	3R_21506127_SNP [dm3] 3R_25680405_SNP [dm6]	A	G	3.436e^-4	0.832	NON_SYNONYMOUS_CODING CG4743 UPSTREAM CG5028 DOWNSTREAM CG5039	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12609784	3R_12609784_SNP [dm3] 3R_16784062_SNP [dm6]	T	G	3.436e^-4	0.832	EXON CR44945	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15895103	3L_15895103_SNP [dm3] 3L_15902003_SNP [dm6]	T	C	3.438e^-4	0.832	UTR_3_PRIME sff
2L	7113039	2L_7113039_DEL [dm3] 2L_7113039_DEL [dm6]	CTC	C	3.454e^-4	0.832	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
3R	14458391	3R_14458391_SNP [dm3] 3R_18632669_SNP [dm6]	T	C	3.457e^-4	0.832	INTRON qin & 1 other
X	1157482	X_1157482_SNP [dm3] X_1263449_SNP [dm6]	G	C	3.460e^-4	0.832	INTRON Atf3
2L	10617509	2L_10617509_SNP [dm3] 2L_10617509_SNP [dm6]	G	A	3.460e^-4	0.832	INTRON Trim9
3R	21503339	3R_21503339_SNP [dm3] 3R_25677617_SNP [dm6]	T	C	3.471e^-4	0.832	SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
2L	2420413	2L_2420413_SNP [dm3] 2L_2420413_SNP [dm6]	A	C	3.477e^-4	0.832	UPSTREAM CG34447 & 1 other INTERGENIC
3R	16521724	3R_16521724_SNP [dm3] 3R_20696002_SNP [dm6]	C	T	3.479e^-4	0.832	INTRON Oamb
2R	12637490	2R_12637490_SNP [dm3] 2R_16749985_SNP [dm6]	C	T	3.483e^-4	0.832	SYNONYMOUS_CODING Acp53Ea UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c
X	4452907	X_4452907_SNP [dm3] X_4558874_SNP [dm6]	T	C	3.486e^-4	0.832	SYNONYMOUS_CODING CG3546 INTRON CR32773	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3963431	3L_3963431_SNP [dm3] 3L_3963431_SNP [dm6]	T	A	3.492e^-4	0.832	UPSTREAM CG12605 INTRON CG12605	TF binding site BDTNP1_TFBS_dl
3L	1251122	3L_1251122_SNP [dm3] 3L_1251122_SNP [dm6]	G	A	3.494e^-4	0.832	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	15304591	2L_15304591_SNP [dm3] 2L_15304591_SNP [dm6]	A	G	3.494e^-4	0.832	INTERGENIC
3L	2339209	3L_2339209_SNP [dm3] 3L_2339209_SNP [dm6]	C	T	3.495e^-4	0.832	INTRON MsR1
2R	14820570	2R_14820570_SNP [dm3] 2R_18933065_SNP [dm6]	C	G	3.496e^-4	0.832	INTRON sano
3R	22954222	3R_22954222_SNP [dm3] 3R_27128500_SNP [dm6]	G	T	3.497e^-4	0.832	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4825003	3R_4825003_SNP [dm3] 3R_8999281_SNP [dm6]	C	A	3.501e^-4	0.832	DOWNSTREAM CG11977 INTRON CG31100
2R	14862263	2R_14862263_SNP [dm3] 2R_18974758_SNP [dm6]	T	C	3.511e^-4	0.832	SYNONYMOUS_CODING Topors	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2919459	3L_2919459_SNP [dm3] 3L_2919459_SNP [dm6]	A	T	3.513e^-4	0.832	INTRON Shab
3L	11422073	3L_11422073_SNP [dm3] 3L_11428973_SNP [dm6]	G	C	3.514e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3863677	3L_3863677_SNP [dm3] 3L_3863677_SNP [dm6]	A	T	3.514e^-4	0.832	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12448664	X_12448664_SNP [dm3] X_12554631_SNP [dm6]	G	A	3.525e^-4	0.832	DOWNSTREAM Cpr11B INTRON CG43921
3R	22963684	3R_22963684_SNP [dm3] 3R_27137962_SNP [dm6]	T	C	3.530e^-4	0.832	INTRON CG6051
3R	16731176	3R_16731176_SNP [dm3] 3R_20905454_SNP [dm6]	A	C	3.533e^-4	0.832	NON_SYNONYMOUS_CODING TotX INTRON CG5621
2L	5772670	2L_5772670_SNP [dm3] 2L_5772670_SNP [dm6]	A	T	3.534e^-4	0.832	UPSTREAM CG9171 INTRON CG9171
2L	21335503	2L_21335503_SNP [dm3] 2L_21335503_SNP [dm6]	T	A	3.536e^-4	0.832	INTRON dimm	transposable element FlyBase
X	9793941	X_9793941_MNP [dm3] X_9899908_MNP [dm6]	AAC	TGA	3.537e^-4	0.832	UPSTREAM CG15249 INTERGENIC
3L	3155838	3L_3155838_SNP [dm3] 3L_3155838_SNP [dm6]	T	A	3.537e^-4	0.832	DOWNSTREAM BtbVII INTRON BtbVII	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	23282036	3R_23282036_SNP [dm3] 3R_27456314_SNP [dm6]	C	G	3.552e^-4	0.832	INTERGENIC
X	7575367	X_7575367_SNP [dm3] X_7681334_SNP [dm6]	G	A	3.556e^-4	0.832	UPSTREAM CR45666 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15896522	2R_15896522_SNP [dm3] 2R_20009017_SNP [dm6]	T	C	3.567e^-4	0.832	INTERGENIC
3L	9914970	3L_9914970_SNP [dm3] 3L_9921870_SNP [dm6]	A	T	3.568e^-4	0.832	INTRON CG34356
3R	19602373	3R_19602373_SNP [dm3] 3R_23776651_SNP [dm6]	A	G	3.572e^-4	0.832	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17407919	X_17407919_SNP [dm3] X_17513886_SNP [dm6]	T	A	3.581e^-4	0.832	INTRON CG43658
3R	10955504	3R_10955504_SNP [dm3] 3R_15129782_SNP [dm6]	G	A	3.584e^-4	0.832	DOWNSTREAM mir-2493 INTRON CG42788
3R	20330289	3R_20330289_SNP [dm3] 3R_24504567_SNP [dm6]	G	A	3.591e^-4	0.832	INTERGENIC
2L	12468289	2L_12468289_SNP [dm3] 2L_12468289_SNP [dm6]	A	C	3.594e^-4	0.832	INTRON bun
X	14045828	X_14045828_SNP [dm3] X_14151795_SNP [dm6]	A	C	3.594e^-4	0.832	SYNONYMOUS_CODING CG12479
2L	18087599	2L_18087599_SNP [dm3] 2L_18087599_SNP [dm6]	G	A	3.594e^-4	0.832	DOWNSTREAM CG31741 INTERGENIC
3R	23030837	3R_23030837_SNP [dm3] 3R_27205115_SNP [dm6]	T	A	3.598e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
2L	6897591	2L_6897591_SNP [dm3] 2L_6897591_SNP [dm6]	C	T	3.600e^-4	0.832	NON_SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_chinmo
3R	9621450	3R_9621450_SNP [dm3] 3R_13795728_SNP [dm6]	T	G	3.600e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4285076	3R_4285076_SNP [dm3] 3R_8459354_SNP [dm6]	C	A	3.612e^-4	0.832	INTRON CG45263
3L	2527559	3L_2527559_SNP [dm3] 3L_2527559_SNP [dm6]	T	A	3.618e^-4	0.832	UPSTREAM CG32295 INTRON Spn
X	18798215	X_18798215_SNP [dm3] X_18904182_SNP [dm6]	A	T	3.620e^-4	0.832	INTRON CG7378
3R	18377386	3R_18377386_SNP [dm3] 3R_22551664_SNP [dm6]	T	C	3.624e^-4	0.832	INTRON CR44062 & 1 other
2L	11789859	2L_11789859_SNP [dm3] 2L_11789859_SNP [dm6]	T	C	3.644e^-4	0.832	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
2R	10405850	2R_10405850_SNP [dm3] 2R_14518345_SNP [dm6]	G	A	3.645e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13372805	2R_13372805_SNP [dm3] 2R_17485300_SNP [dm6]	A	C	3.651e^-4	0.832	UTR_5_PRIME CG43110 INTRON NT5E-2	TF binding site mE1_TFBS_Trl
3L	12023581	3L_12023581_SNP [dm3] 3L_12030481_SNP [dm6]	G	C	3.657e^-4	0.832	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21998644	2L_21998644_DEL [dm3] 2L_21998644_DEL [dm6]	TA	T	3.662e^-4	0.832	INTERGENIC
3R	9026807	3R_9026807_SNP [dm3] 3R_13201085_SNP [dm6]	A	T	3.662e^-4	0.832	INTERGENIC
2L	15155464	2L_15155464_SNP [dm3] 2L_15155464_SNP [dm6]	A	T	3.675e^-4	0.832	INTERGENIC
3L	1098633	3L_1098633_SNP [dm3] 3L_1098633_SNP [dm6]	C	T	3.681e^-4	0.832	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	21940080	2L_21940080_SNP [dm3] 2L_21940080_SNP [dm6]	C	A	3.684e^-4	0.832	INTERGENIC
2R	10821918	2R_10821918_SNP [dm3] 2R_14934413_SNP [dm6]	T	C	3.692e^-4	0.832	DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_Trl
3L	1338390	3L_1338390_SNP [dm3] 3L_1338390_SNP [dm6]	G	A	3.693e^-4	0.832	SYNONYMOUS_CODING l_3_02640	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12203178	X_12203178_SNP [dm3] X_12309145_SNP [dm6]	A	T	3.693e^-4	0.832	INTRON Ten-a
2L	1188814	2L_1188814_SNP [dm3] 2L_1188814_SNP [dm6]	A	G	3.693e^-4	0.832	INTRON CG5001
3L	4127778	3L_4127778_SNP [dm3] 3L_4127778_SNP [dm6]	T	G	3.694e^-4	0.832	INTRON ens
3L	15187557	3L_15187557_SNP [dm3] 3L_15194457_SNP [dm6]	C	T	3.710e^-4	0.832	INTERGENIC
3R	23488833	3R_23488833_SNP [dm3] 3R_27663111_SNP [dm6]	C	G	3.711e^-4	0.832	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17786653	3R_17786653_SNP [dm3] 3R_21960931_SNP [dm6]	T	C	3.718e^-4	0.832	INTRON Eip93F
2R	13728965	2R_13728965_SNP [dm3] 2R_17841460_SNP [dm6]	T	C	3.720e^-4	0.832	UTR_3_PRIME grh DOWNSTREAM grh
2L	1397974	2L_1397974_SNP [dm3] 2L_1397974_SNP [dm6]	C	A	3.723e^-4	0.832	INTRON lea	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2919494	3L_2919494_SNP [dm3] 3L_2919494_SNP [dm6]	G	A	3.725e^-4	0.832	INTRON Shab
3R	23137712	3R_23137712_SNP [dm3] 3R_27311990_SNP [dm6]	C	G	3.736e^-4	0.832	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad
2L	4415311	2L_4415311_SNP [dm3] 2L_4415311_SNP [dm6]	C	G	3.738e^-4	0.832	INTRON CG15431
3L	1339101	3L_1339101_SNP [dm3] 3L_1339101_SNP [dm6]	C	T	3.754e^-4	0.832	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199
2L	1626595	2L_1626595_SNP [dm3] 2L_1626595_SNP [dm6]	G	A	3.755e^-4	0.832	UPSTREAM CR44603 INTERGENIC
2L	6075089	2L_6075089_DEL [dm3] 2L_6075089_DEL [dm6]	TTGATTATATAGATAA...	T	3.755e^-4	0.832	UPSTREAM CR43801 INTERGENIC	TF binding site BDTNP1_TFBS_z
X	10111666	X_10111666_SNP [dm3] X_10217633_SNP [dm6]	A	C	3.760e^-4	0.832	UPSTREAM CG2962 & 1 other DOWNSTREAM CG15308 & 1 other EXON CR45629
3L	427267	3L_427267_SNP [dm3] 3L_427267_SNP [dm6]	T	C	3.762e^-4	0.832	INTERGENIC
3R	23867925	3R_23867925_SNP [dm3] 3R_28042203_SNP [dm6]	T	A	3.780e^-4	0.832	INTRON CG34362
3L	7872652	3L_7872652_SNP [dm3] 3L_7879552_SNP [dm6]	A	G	3.784e^-4	0.832	INTRON CG32365	TF binding site mE1_TFBS_HSA
3R	3636327	3R_3636327_SNP [dm3] 3R_7810605_SNP [dm6]	A	G	3.792e^-4	0.832	UTR_5_PRIME CG31472 UPSTREAM CG2993	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	13271140	2L_13271140_SNP [dm3] 2L_13271140_SNP [dm6]	C	T	3.799e^-4	0.832	INTRON CG44085
3L	16118152	3L_16118152_SNP [dm3] 3L_16125052_SNP [dm6]	G	A	3.800e^-4	0.832	SYNONYMOUS_CODING CG12272 DOWNSTREAM Pgm
3R	26688378	3R_26688378_SNP [dm3] 3R_30862656_SNP [dm6]	T	C	3.802e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_gt
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	3.805e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12503673	2L_12503673_SNP [dm3] 2L_12503673_SNP [dm6]	A	C	3.811e^-4	0.832	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	14443104	2R_14443104_SNP [dm3] 2R_18555599_SNP [dm6]	T	C	3.815e^-4	0.832	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18415234	3R_18415234_SNP [dm3] 3R_22589512_SNP [dm6]	T	G	3.816e^-4	0.832	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19295729	2R_19295729_SNP [dm3] 2R_23408206_SNP [dm6]	A	G	3.817e^-4	0.832	INTERGENIC
3L	7507474	3L_7507474_SNP [dm3] 3L_7514374_SNP [dm6]	G	T	3.820e^-4	0.832	INTRON CG7546
3R	16692953	3R_16692953_SNP [dm3] 3R_20867231_SNP [dm6]	G	T	3.822e^-4	0.832	UPSTREAM CG3822 INTERGENIC
2R	12011938	2R_12011938_SNP [dm3] 2R_16124433_SNP [dm6]	C	T	3.830e^-4	0.832	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1833751	2L_1833751_SNP [dm3] 2L_1833751_SNP [dm6]	C	T	3.830e^-4	0.832	INTERGENIC
3L	13383490	3L_13383490_SNP [dm3] 3L_13390390_SNP [dm6]	A	G	3.833e^-4	0.832	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6318945	2L_6318945_SNP [dm3] 2L_6318945_SNP [dm6]	T	G	3.839e^-4	0.832	INTRON Ddr
2L	2398661	2L_2398661_SNP [dm3] 2L_2398661_SNP [dm6]	A	G	3.853e^-4	0.832	INTRON VGlut
3R	26688368	3R_26688368_SNP [dm3] 3R_30862646_SNP [dm6]	A	T	3.861e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	1921965	2L_1921965_DEL [dm3] 2L_1921965_DEL [dm6]	TG	C	3.862e^-4	0.832	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19355365	X_19355365_SNP [dm3] X_19461332_SNP [dm6]	G	A	3.870e^-4	0.832	INTRON kek5
2L	10490086	2L_10490086_INS [dm3] 2L_10490086_INS [dm6]	G	GC	3.877e^-4	0.832	UTR_3_PRIME CG6144 & 1 other
X	16287958	X_16287958_SNP [dm3] X_16393925_SNP [dm6]	T	A	3.879e^-4	0.832	SYNONYMOUS_CODING mei-41
2L	3417630	2L_3417630_SNP [dm3] 2L_3417630_SNP [dm6]	T	C	3.891e^-4	0.832	UTR_3_PRIME CG31952 INTRON pgant2
X	9793896	X_9793896_SNP [dm3] X_9899863_SNP [dm6]	C	T	3.895e^-4	0.832	UPSTREAM CG15249 INTERGENIC
2R	14983843	2R_14983843_SNP [dm3] 2R_19096338_SNP [dm6]	G	A	3.905e^-4	0.832	UPSTREAM Ir56a INTRON 5-HT1A
3R	18129712	3R_18129712_SNP [dm3] 3R_22303990_SNP [dm6]	C	T	3.908e^-4	0.832	UTR_3_PRIME CG7084 DOWNSTREAM CG7084
3R	18409090	3R_18409090_SNP [dm3] 3R_22583368_SNP [dm6]	G	T	3.911e^-4	0.832	UTR_3_PRIME CG33107 UPSTREAM Dph5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19082593	X_19082593_SNP [dm3] X_19188560_SNP [dm6]	A	G	3.912e^-4	0.832	INTRON Mec2
3L	2266067	3L_2266067_SNP [dm3] 3L_2266067_SNP [dm6]	A	T	3.915e^-4	0.832	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	18418415	3R_18418415_SNP [dm3] 3R_22592693_SNP [dm6]	G	T	3.941e^-4	0.832	INTRON Efa6
3L	984093	3L_984093_SNP [dm3] 3L_984093_SNP [dm6]	A	G	3.945e^-4	0.832	INTRON Glut1
3R	25465378	3R_25465378_SNP [dm3] 3R_29639656_SNP [dm6]	C	T	3.952e^-4	0.832	INTRON Dop1R2
3R	11235596	3R_11235596_SNP [dm3] 3R_15409874_SNP [dm6]	C	T	3.955e^-4	0.832	INTRON Atx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14896988	2R_14896988_SNP [dm3] 2R_19009483_SNP [dm6]	G	C	3.958e^-4	0.832	DOWNSTREAM tn INTERGENIC
3R	22901252	3R_22901252_SNP [dm3] 3R_27075530_SNP [dm6]	A	G	3.959e^-4	0.832	UPSTREAM CG14257 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16868472	3R_16868472_SNP [dm3] 3R_21042750_SNP [dm6]	A	C	3.960e^-4	0.832	UPSTREAM Dhc93AB INTERGENIC
2L	675141	2L_675141_SNP [dm3] 2L_675141_SNP [dm6]	T	C	3.975e^-4	0.832	INTRON ds	TF binding site mE1_TFBS_inv
3R	26529487	3R_26529487_SNP [dm3] 3R_30703765_SNP [dm6]	A	T	3.975e^-4	0.832	DOWNSTREAM CG31010 INTERGENIC
3R	23055773	3R_23055773_SNP [dm3] 3R_27230051_SNP [dm6]	C	T	3.977e^-4	0.832	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2434390	3L_2434390_SNP [dm3] 3L_2434390_SNP [dm6]	A	T	3.980e^-4	0.832	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17822821	X_17822821_SNP [dm3] X_17928788_SNP [dm6]	T	G	3.984e^-4	0.832	UTR_3_PRIME Sh DOWNSTREAM Sh
3R	7500593	3R_7500593_SNP [dm3] 3R_11674871_SNP [dm6]	C	T	3.998e^-4	0.832	UTR_3_PRIME CG14715 DOWNSTREAM CG18476 & 1 other	TF binding site mE1_TFBS_sens
2L	4176474	2L_4176474_SNP [dm3] 2L_4176474_SNP [dm6]	G	A	4.023e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5840173	2L_5840173_SNP [dm3] 2L_5840173_SNP [dm6]	G	C	4.024e^-4	0.832	INTRON TrissinR
2L	22009901	2L_22009901_SNP [dm3] 2L_22009901_SNP [dm6]	T	C	4.032e^-4	0.832	INTERGENIC
2L	7458018	2L_7458018_SNP [dm3] 2L_7458018_SNP [dm6]	A	G	4.048e^-4	0.832	UPSTREAM Gr28b INTRON Gr28b
2R	14439885	2R_14439885_SNP [dm3] 2R_18552380_SNP [dm6]	A	G	4.049e^-4	0.832	INTERGENIC
3L	14094780	3L_14094780_SNP [dm3] 3L_14101680_SNP [dm6]	A	G	4.052e^-4	0.832	INTERGENIC
2L	13058776	2L_13058776_SNP [dm3] 2L_13058776_SNP [dm6]	A	G	4.058e^-4	0.832	INTRON CG9932
X	7324134	X_7324134_SNP [dm3] X_7430101_SNP [dm6]	A	G	4.063e^-4	0.832	INTERGENIC
3L	8047362	3L_8047362_SNP [dm3] 3L_8054262_SNP [dm6]	A	T	4.064e^-4	0.832	DOWNSTREAM bip1 & 1 other INTERGENIC
3R	18412912	3R_18412912_SNP [dm3] 3R_22587190_SNP [dm6]	T	A	4.065e^-4	0.832	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1567921	2L_1567921_SNP [dm3] 2L_1567921_SNP [dm6]	A	T	4.066e^-4	0.832	INTRON haf
3R	3650076	3R_3650076_SNP [dm3] 3R_7824354_SNP [dm6]	A	G	4.067e^-4	0.832	INTRON CG34384
3R	10342100	3R_10342100_SNP [dm3] 3R_14516378_SNP [dm6]	A	G	4.074e^-4	0.832	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
3L	9914967	3L_9914967_SNP [dm3] 3L_9921867_SNP [dm6]	A	C	4.074e^-4	0.832	INTRON CG34356
X	14234130	X_14234130_SNP [dm3] X_14340097_SNP [dm6]	A	T	4.082e^-4	0.832	INTRON dpr8
2R	8858775	2R_8858775_SNP [dm3] 2R_12971270_SNP [dm6]	A	T	4.087e^-4	0.832	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	2393569	2L_2393569_SNP [dm3] 2L_2393569_SNP [dm6]	C	T	4.088e^-4	0.832	INTRON VGlut
3R	24969624	3R_24969624_SNP [dm3] 3R_29143902_SNP [dm6]	C	T	4.100e^-4	0.832	SPLICE_SITE_REGION CG14516 INTRON CG14516
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	4.107e^-4	0.832	INTRON Octbeta2R
3R	16868432	3R_16868432_SNP [dm3] 3R_21042710_SNP [dm6]	A	T	4.116e^-4	0.832	UPSTREAM Dhc93AB INTERGENIC
3R	12647192	3R_12647192_SNP [dm3] 3R_16821470_SNP [dm6]	T	A	4.127e^-4	0.832	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10327576	2R_10327576_SNP [dm3] 2R_14440071_SNP [dm6]	A	T	4.129e^-4	0.832	INTRON Oaz
2R	17958130	2R_17958130_SNP [dm3] 2R_22070625_SNP [dm6]	T	C	4.131e^-4	0.832	SYNONYMOUS_CODING CG11475 DOWNSTREAM Snp & 1 other
3L	2523797	3L_2523797_SNP [dm3] 3L_2523797_SNP [dm6]	G	A	4.134e^-4	0.832	INTRON Spn
X	14768584	X_14768584_SNP [dm3] X_14874551_SNP [dm6]	T	G	4.134e^-4	0.832	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3L	5779419	3L_5779419_SNP [dm3] 3L_5786319_SNP [dm6]	A	G	4.144e^-4	0.832	INTRON Cralbp
2R	8484913	2R_8484913_SNP [dm3] 2R_12597408_SNP [dm6]	C	A	4.146e^-4	0.832	INTRON Amph
3R	24604786	3R_24604786_SNP [dm3] 3R_28779064_SNP [dm6]	G	A	4.148e^-4	0.832	INTERGENIC
3L	1323654	3L_1323654_SNP [dm3] 3L_1323654_SNP [dm6]	A	G	4.166e^-4	0.832	UPSTREAM CG9184 & 1 other INTRON Myo61F & 1 other
3L	1935237	3L_1935237_SNP [dm3] 3L_1935237_SNP [dm6]	A	G	4.167e^-4	0.832	SYNONYMOUS_CODING CG5687
2L	4061204	2L_4061204_SNP [dm3] 2L_4061204_SNP [dm6]	G	A	4.170e^-4	0.832	INTRON ed
2L	14403311	2L_14403311_SNP [dm3] 2L_14403311_SNP [dm6]	C	G	4.173e^-4	0.832	INTRON elB	regulatory region REDfly_CRMs
X	5810896	X_5810896_SNP [dm3] X_5916863_SNP [dm6]	A	G	4.174e^-4	0.832	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18400284	3R_18400284_SNP [dm3] 3R_22574562_SNP [dm6]	C	T	4.177e^-4	0.832	INTRON CG33110
3L	1759703	3L_1759703_SNP [dm3] 3L_1759703_SNP [dm6]	T	C	4.178e^-4	0.832	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7629077	2L_7629077_SNP [dm3] 2L_7629077_SNP [dm6]	G	A	4.186e^-4	0.832	INTERGENIC
3R	20186355	3R_20186355_DEL [dm3] 3R_24360633_DEL [dm6]	TC	T	4.187e^-4	0.832	UPSTREAM CG18528 DOWNSTREAM CG5762 INTERGENIC
X	11951163	X_11951163_SNP [dm3] X_12057130_SNP [dm6]	G	A	4.188e^-4	0.832	UPSTREAM Uch-L5R INTRON CR43960 & 1 other
3L	14091583	3L_14091583_SNP [dm3] 3L_14098483_SNP [dm6]	G	T	4.190e^-4	0.832	UPSTREAM Fbp1 INTERGENIC
2L	15034312	2L_15034312_SNP [dm3] 2L_15034312_SNP [dm6]	A	G	4.197e^-4	0.832	UTR_3_PRIME GABA-B-R1 DOWNSTREAM GABA-B-R1
2R	9836503	2R_9836503_SNP [dm3] 2R_13948998_SNP [dm6]	A	G	4.198e^-4	0.832	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2523765	3L_2523765_SNP [dm3] 3L_2523765_SNP [dm6]	G	A	4.203e^-4	0.832	INTRON Spn
3R	20425296	3R_20425296_SNP [dm3] 3R_24599574_SNP [dm6]	G	A	4.208e^-4	0.832	INTRON mld	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13418886	3R_13418886_SNP [dm3] 3R_17593164_SNP [dm6]	C	G	4.208e^-4	0.832	INTERGENIC
2L	7557796	2L_7557796_SNP [dm3] 2L_7557796_SNP [dm6]	G	T	4.211e^-4	0.832	INTRON RapGAP1
3L	1600655	3L_1600655_SNP [dm3] 3L_1600655_SNP [dm6]	C	T	4.213e^-4	0.832	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
2R	17030509	2R_17030509_SNP [dm3] 2R_21143004_SNP [dm6]	T	A	4.213e^-4	0.832	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2915182	3L_2915182_SNP [dm3] 3L_2915182_SNP [dm6]	A	T	4.214e^-4	0.832	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo
3L	10490013	3L_10490013_INS [dm3] 3L_10496913_INS [dm6]	T	TGAT	4.215e^-4	0.832	INTRON A2bp1
3L	3285499	3L_3285499_SNP [dm3] 3L_3285499_SNP [dm6]	C	T	4.217e^-4	0.832	INTRON CG12017
3R	23565299	3R_23565299_DEL [dm3] 3R_27739577_DEL [dm6]	CCATCACCCATGGC...	C	4.221e^-4	0.832	INTRON Ets98B
3R	16693008	3R_16693008_SNP [dm3] 3R_20867286_SNP [dm6]	C	T	4.221e^-4	0.832	INTERGENIC
2R	12328276	2R_12328276_SNP [dm3] 2R_16440771_SNP [dm6]	G	A	4.224e^-4	0.832	INTERGENIC
3R	23126584	3R_23126584_SNP [dm3] 3R_27300862_SNP [dm6]	A	C	4.226e^-4	0.832	INTRON CG3339
2R	14865284	2R_14865284_SNP [dm3] 2R_18977779_SNP [dm6]	T	C	4.227e^-4	0.832	UTR_5_PRIME CG18605 DOWNSTREAM Topors	TF binding site mE1_TFBS_cad
3L	1281756	3L_1281756_SNP [dm3] 3L_1281756_SNP [dm6]	T	A	4.235e^-4	0.832	INTRON CG32333
2R	10043354	2R_10043354_SNP [dm3] 2R_14155849_SNP [dm6]	T	C	4.237e^-4	0.832	SYNONYMOUS_CODING pea	TF binding site mE1_TFBS_sens
2R	20198156	2R_20198156_SNP [dm3] 2R_24310633_SNP [dm6]	G	A	4.245e^-4	0.832	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3L	3995031	3L_3995031_SNP [dm3] 3L_3995031_SNP [dm6]	A	T	4.256e^-4	0.832	INTERGENIC
3R	21903301	3R_21903301_SNP [dm3] 3R_26077579_SNP [dm6]	A	C	4.257e^-4	0.832	NON_SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad
X	5810937	X_5810937_SNP [dm3] X_5916904_SNP [dm6]	G	C	4.263e^-4	0.832	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12744195	X_12744195_DEL [dm3] X_12850162_DEL [dm6]	TAA	T	4.263e^-4	0.832	INTRON Pde9
3R	23031064	3R_23031064_SNP [dm3] 3R_27205342_SNP [dm6]	C	A	4.271e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
X	14861771	X_14861771_SNP [dm3] X_14967738_SNP [dm6]	T	A	4.285e^-4	0.832	INTRON eag
3R	16865783	3R_16865783_SNP [dm3] 3R_21040061_SNP [dm6]	G	A	4.291e^-4	0.832	SYNONYMOUS_CODING Dhc93AB
3L	3135756	3L_3135756_SNP [dm3] 3L_3135756_SNP [dm6]	T	C	4.294e^-4	0.832	INTRON CG11537
2R	19141844	2R_19141844_SNP [dm3] 2R_23254321_SNP [dm6]	G	C	4.301e^-4	0.832	INTERGENIC
2L	1428420	2L_1428420_SNP [dm3] 2L_1428420_SNP [dm6]	A	T	4.308e^-4	0.832	UPSTREAM CG43401 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17998384	2L_17998384_SNP [dm3] 2L_17998384_SNP [dm6]	A	G	4.315e^-4	0.832	INTERGENIC
3R	16866648	3R_16866648_SNP [dm3] 3R_21040926_SNP [dm6]	C	T	4.318e^-4	0.832	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB
3R	10279043	3R_10279043_SNP [dm3] 3R_14453321_SNP [dm6]	G	A	4.329e^-4	0.832	INTRON cv-c	TF binding site mE1_TFBS_inv
3L	427269	3L_427269_SNP [dm3] 3L_427269_SNP [dm6]	A	T	4.332e^-4	0.832	INTERGENIC
2L	13673275	2L_13673275_SNP [dm3] 2L_13673275_SNP [dm6]	A	C	4.333e^-4	0.832	DOWNSTREAM CG18507 INTERGENIC
3R	16250546	3R_16250546_SNP [dm3] 3R_20424824_SNP [dm6]	A	T	4.343e^-4	0.832	INTRON Gfrl
3L	13944910	3L_13944910_SNP [dm3] 3L_13951810_SNP [dm6]	T	G	4.345e^-4	0.832	INTRON CG32137
2R	15885596	2R_15885596_SNP [dm3] 2R_19998091_SNP [dm6]	T	A	4.348e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	3318724	2R_3318724_SNP [dm3] 2R_7431219_SNP [dm6]	T	A	4.352e^-4	0.832	DOWNSTREAM CR44204 INTRON so	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12940020	X_12940020_SNP [dm3] X_13045987_SNP [dm6]	G	C	4.353e^-4	0.832	INTRON rad
2L	7235115	2L_7235115_SNP [dm3] 2L_7235115_SNP [dm6]	A	C	4.357e^-4	0.832	INTRON Ndae1
2L	21335559	2L_21335559_SNP [dm3] 2L_21335559_SNP [dm6]	T	C	4.357e^-4	0.832	INTRON dimm
3R	16763722	3R_16763722_DEL [dm3] 3R_20938000_DEL [dm6]	AACTAACTTTTTATACCCGT...	C	4.365e^-4	0.832	INTRON CG31191
2L	15388384	2L_15388384_SNP [dm3] 2L_15388384_SNP [dm6]	A	C	4.370e^-4	0.832	INTERGENIC
3L	2598515	3L_2598515_SNP [dm3] 3L_2598515_SNP [dm6]	T	G	4.373e^-4	0.832	NON_SYNONYMOUS_CODING CG12182 UPSTREAM CG16985
2L	13703788	2L_13703788_SNP [dm3] 2L_13703788_SNP [dm6]	T	A	4.377e^-4	0.832	INTRON CG31814
3L	16361326	3L_16361326_SNP [dm3] 3L_16368226_SNP [dm6]	A	G	4.378e^-4	0.832	UPSTREAM Cpr72Ec & 1 other INTERGENIC
3R	23030985	3R_23030985_SNP [dm3] 3R_27205263_SNP [dm6]	G	C	4.382e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
3L	12467590	3L_12467590_SNP [dm3] 3L_12474490_SNP [dm6]	G	A	4.384e^-4	0.832	UTR_3_PRIME CG10663 DOWNSTREAM CG10663 & 1 other
3L	8375632	3L_8375632_SNP [dm3] 3L_8382532_SNP [dm6]	C	T	4.384e^-4	0.832	INTRON ImpE1	TF binding site mE1_TFBS_inv
3L	18371820	3L_18371820_SNP [dm3] 3L_18378720_SNP [dm6]	T	G	4.385e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21383724	3R_21383724_SNP [dm3] 3R_25558002_SNP [dm6]	A	G	4.390e^-4	0.832	INTRON msi
X	5335827	X_5335827_SNP [dm3] X_5441794_SNP [dm6]	C	T	4.391e^-4	0.832	INTERGENIC
X	11951165	X_11951165_SNP [dm3] X_12057132_SNP [dm6]	C	T	4.401e^-4	0.832	UPSTREAM Uch-L5R INTRON CR43960 & 1 other
3R	19896774	3R_19896774_SNP [dm3] 3R_24071052_SNP [dm6]	G	C	4.402e^-4	0.832	INTRON 4EHP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24752213	3R_24752213_SNP [dm3] 3R_28926491_SNP [dm6]	G	T	4.414e^-4	0.832	INTRON CG14521
3R	24752216	3R_24752216_SNP [dm3] 3R_28926494_SNP [dm6]	T	C	4.414e^-4	0.832	INTRON CG14521
2L	6297759	2L_6297759_SNP [dm3] 2L_6297759_SNP [dm6]	C	A	4.416e^-4	0.832	INTRON Ddr
2R	20019440	2R_20019440_SNP [dm3] 2R_24131917_SNP [dm6]	G	A	4.423e^-4	0.832	UPSTREAM tamo INTRON tamo
3R	16692999	3R_16692999_SNP [dm3] 3R_20867277_SNP [dm6]	G	A	4.428e^-4	0.832	INTERGENIC
3L	2313618	3L_2313618_SNP [dm3] 3L_2313618_SNP [dm6]	C	T	4.429e^-4	0.832	INTERGENIC
2L	10617505	2L_10617505_SNP [dm3] 2L_10617505_SNP [dm6]	C	A	4.429e^-4	0.832	INTRON Trim9
3R	8575947	3R_8575947_SNP [dm3] 3R_12750225_SNP [dm6]	C	A	4.433e^-4	0.832	INTRON beat-Vc
X	7088979	X_7088979_DEL [dm3] X_7194946_DEL [dm6]	GG	G	4.444e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11924397	X_11924397_SNP [dm3] X_12030364_SNP [dm6]	T	A	4.454e^-4	0.832	INTRON Cyp311a1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18729530	3R_18729530_SNP [dm3] 3R_22903808_SNP [dm6]	T	C	4.457e^-4	0.832	INTRON klg	TF binding site mE1_TFBS_chinmo
2R	10108866	2R_10108866_SNP [dm3] 2R_14221361_SNP [dm6]	A	T	4.473e^-4	0.832	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	12179419	2L_12179419_SNP [dm3] 2L_12179419_SNP [dm6]	C	T	4.474e^-4	0.832	INTRON aret
2R	19478027	2R_19478027_SNP [dm3] 2R_23590504_SNP [dm6]	T	C	4.479e^-4	0.832	INTRON apt
X	9793917	X_9793917_DEL [dm3] X_9899884_DEL [dm6]	ATATGTATGTATATATAA...	A	4.479e^-4	0.832	UPSTREAM CG15249 INTERGENIC
3L	11401398	3L_11401398_SNP [dm3] 3L_11408298_SNP [dm6]	T	A	4.483e^-4	0.832	INTERGENIC
3R	23938539	3R_23938539_SNP [dm3] 3R_28112817_SNP [dm6]	G	A	4.493e^-4	0.832	INTERGENIC
X	14390360	X_14390360_SNP [dm3] X_14496327_SNP [dm6]	A	G	4.501e^-4	0.832	SYNONYMOUS_CODING CG12540
3R	24366421	3R_24366421_SNP [dm3] 3R_28540699_SNP [dm6]	A	G	4.507e^-4	0.832	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15918401	3L_15918401_SNP [dm3] 3L_15925301_SNP [dm6]	T	C	4.516e^-4	0.832	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12155308	2R_12155308_SNP [dm3] 2R_16267803_SNP [dm6]	C	A	4.520e^-4	0.832	SYNONYMOUS_CODING Khc DOWNSTREAM csul	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	19469329	2L_19469329_SNP [dm3] 2L_19469329_SNP [dm6]	C	T	4.520e^-4	0.832	DOWNSTREAM CR45723 EXON CR45722
3L	12335568	3L_12335568_SNP [dm3] 3L_12342468_SNP [dm6]	G	T	4.524e^-4	0.832	SYNONYMOUS_CODING CrzR
2L	11195342	2L_11195342_SNP [dm3] 2L_11195342_SNP [dm6]	T	C	4.530e^-4	0.832	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
2L	2509293	2L_2509293_SNP [dm3] 2L_2509293_SNP [dm6]	T	A	4.531e^-4	0.832	INTERGENIC
2R	14438087	2R_14438087_SNP [dm3] 2R_18550582_SNP [dm6]	C	A	4.534e^-4	0.832	INTERGENIC
X	9795195	X_9795195_SNP [dm3] X_9901162_SNP [dm6]	T	C	4.536e^-4	0.832	INTERGENIC
2R	6435261	2R_6435261_DEL [dm3] 2R_10547756_DEL [dm6]	TT	T	4.541e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5232097	3L_5232097_SNP [dm3] 3L_5238997_SNP [dm6]	G	A	4.546e^-4	0.832	INTRON shep
2L	13026233	2L_13026233_SNP [dm3] 2L_13026233_SNP [dm6]	A	T	4.556e^-4	0.832	INTRON CG9932
3R	24364506	3R_24364506_SNP [dm3] 3R_28538784_SNP [dm6]	G	A	4.560e^-4	0.832	INTRON Ppn

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.555e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.007119
In_3R_K	0.071494

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.159	0.0758
In_3R_K	7.262	0.0265

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2075 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	15879364	3R_15879364_DEL [dm3] 3R_20053642_DEL [dm6]	TT	T	2.011e^-6	0.893	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1976242	3R_1976242_SNP [dm3] 3R_6150520_SNP [dm6]	A	G	2.097e^-6	0.893	UTR_3_PRIME CG31559
3L	7705321	3L_7705321_DEL [dm3] 3L_7712221_DEL [dm6]	AA	A	2.523e^-6	0.893	INTRON CG32373 & 1 other
2R	7038076	2R_7038076_SNP [dm3] 2R_11150571_SNP [dm6]	T	C	2.542e^-6	0.893	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13677883	3L_13677883_DEL [dm3] 3L_13684783_DEL [dm6]	TT	T	2.565e^-6	0.893	INTRON bru-3
X	7088979	X_7088979_DEL [dm3] X_7194946_DEL [dm6]	GG	G	2.942e^-6	0.893	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7088963	X_7088963_SNP [dm3] X_7194930_SNP [dm6]	G	A	3.879e^-6	0.893	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24499219	3R_24499219_SNP [dm3] 3R_28673497_SNP [dm6]	A	G	4.416e^-6	0.893	INTERGENIC
2R	10800918	2R_10800918_SNP [dm3] 2R_14913413_SNP [dm6]	G	A	5.432e^-6	0.893	INTRON CG10249
2R	8831715	2R_8831715_SNP [dm3] 2R_12944210_SNP [dm6]	T	G	7.611e^-6	0.893	INTRON Mdr49
3R	25600926	3R_25600926_SNP [dm3] 3R_29775204_SNP [dm6]	T	C	7.664e^-6	0.893	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15098578	3R_15098578_SNP [dm3] 3R_19272856_SNP [dm6]	T	C	8.559e^-6	0.893	INTERGENIC
3R	15143976	3R_15143976_INS [dm3] 3R_19318254_INS [dm6]	C	CT	1.143e^-5	0.893	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	13880214	2L_13880214_INS [dm3] 2L_13880214_INS [dm6]	A	AA	1.304e^-5	0.893	INTRON CenG1A
3L	1675225	3L_1675225_SNP [dm3] 3L_1675225_SNP [dm6]	G	A	1.364e^-5	0.893	INTRON CG7991	TF binding site mE1_TFBS_HSA
3R	14725001	3R_14725001_SNP [dm3] 3R_18899279_SNP [dm6]	T	A	1.454e^-5	0.893	UTR_3_PRIME CG14297 UPSTREAM Rh2	regulatory region REDfly_CRMs
3L	3890973	3L_3890973_SNP [dm3] 3L_3890973_SNP [dm6]	A	G	1.470e^-5	0.893	DOWNSTREAM CR45422 INTERGENIC
3L	680550	3L_680550_DEL [dm3] 3L_680550_DEL [dm6]	TAT	T	1.488e^-5	0.893	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	12179395	2L_12179395_SNP [dm3] 2L_12179395_SNP [dm6]	A	T	1.501e^-5	0.893	INTRON aret
3R	15143982	3R_15143982_SNP [dm3] 3R_19318260_SNP [dm6]	C	T	1.696e^-5	0.893	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	4587468	X_4587468_SNP [dm3] X_4693435_SNP [dm6]	G	A	1.697e^-5	0.893	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5449531	2R_5449531_SNP [dm3] 2R_9562026_SNP [dm6]	G	A	1.698e^-5	0.893	DOWNSTREAM Or45b INTRON CG1809 EXON CR45281
3L	13677839	3L_13677839_SNP [dm3] 3L_13684739_SNP [dm6]	C	T	1.706e^-5	0.893	INTRON bru-3
2L	12179430	2L_12179430_SNP [dm3] 2L_12179430_SNP [dm6]	A	T	1.710e^-5	0.893	INTRON aret
2L	12179419	2L_12179419_SNP [dm3] 2L_12179419_SNP [dm6]	C	T	1.733e^-5	0.893	INTRON aret
3R	20010947	3R_20010947_SNP [dm3] 3R_24185225_SNP [dm6]	A	T	1.793e^-5	0.893	INTERGENIC
2L	12179422	2L_12179422_SNP [dm3] 2L_12179422_SNP [dm6]	G	A	1.801e^-5	0.893	INTRON aret
3R	15144168	3R_15144168_INS [dm3] 3R_19318446_INS [dm6]	C	TGT	1.871e^-5	0.893	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	11410638	2L_11410638_INS [dm3] 2L_11410638_INS [dm6]	A	AA	1.968e^-5	0.893	INTERGENIC	regulatory region REDfly_CRMs
3R	18116537	3R_18116537_SNP [dm3] 3R_22290815_SNP [dm6]	C	G	2.122e^-5	0.893	INTRON SKIP
2L	12179484	2L_12179484_SNP [dm3] 2L_12179484_SNP [dm6]	G	A	2.156e^-5	0.893	INTRON aret
3L	5343037	3L_5343037_SNP [dm3] 3L_5349937_SNP [dm6]	T	C	2.345e^-5	0.893	INTRON lama
2R	14268526	2R_14268526_SNP [dm3] 2R_18381021_SNP [dm6]	C	G	2.512e^-5	0.893	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4501478	2R_4501478_SNP [dm3] 2R_8613973_SNP [dm6]	G	C	2.601e^-5	0.893	NON_SYNONYMOUS_CODING CG8642 UPSTREAM Cirl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13677847	3L_13677847_SNP [dm3] 3L_13684747_SNP [dm6]	C	T	2.714e^-5	0.893	INTRON bru-3
2L	19441096	2L_19441096_SNP [dm3] 2L_19441096_SNP [dm6]	A	T	2.761e^-5	0.893	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14133741	3R_14133741_SNP [dm3] 3R_18308019_SNP [dm6]	T	C	2.768e^-5	0.893	INTRON PKD
X	12518903	X_12518903_SNP [dm3] X_12624870_SNP [dm6]	G	C	2.863e^-5	0.893	INTRON CG15728
2L	8837253	2L_8837253_SNP [dm3] 2L_8837253_SNP [dm6]	G	A	2.938e^-5	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7200507	3L_7200507_SNP [dm3] 3L_7207407_SNP [dm6]	G	A	2.986e^-5	0.893	INTERGENIC
2L	10264865	2L_10264865_SNP [dm3] 2L_10264865_SNP [dm6]	T	C	3.063e^-5	0.893	SYNONYMOUS_CODING CG18619 UPSTREAM Mob3	TF binding site BDTNP1_TFBS_dl
2R	10521380	2R_10521380_SNP [dm3] 2R_14633875_SNP [dm6]	G	C	3.113e^-5	0.893	INTERGENIC
2L	11133084	2L_11133084_SNP [dm3] 2L_11133084_SNP [dm6]	G	A	3.166e^-5	0.893	SYNONYMOUS_CODING CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	505010	X_505010_SNP [dm3] X_610977_SNP [dm6]	T	A	3.284e^-5	0.893	UTR_3_PRIME CG13366 INTRON CG13366
2L	3060270	2L_3060270_SNP [dm3] 2L_3060270_SNP [dm6]	T	G	3.417e^-5	0.893	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12340909	3L_12340909_SNP [dm3] 3L_12347809_SNP [dm6]	G	C	3.445e^-5	0.893	SYNONYMOUS_CODING CrzR
X	14814936	X_14814936_SNP [dm3] X_14920903_SNP [dm6]	T	G	3.447e^-5	0.893	SYNONYMOUS_CODING CG9503 INTRON Flo2
3L	676864	3L_676864_SNP [dm3] 3L_676864_SNP [dm6]	C	T	3.473e^-5	0.893	INTERGENIC
2R	8444769	2R_8444769_SNP [dm3] 2R_12557264_SNP [dm6]	G	A	3.496e^-5	0.893	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10483100	2L_10483100_SNP [dm3] 2L_10483100_SNP [dm6]	G	A	3.512e^-5	0.893	UPSTREAM Grip75 DOWNSTREAM RluA-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	4576081	X_4576081_SNP [dm3] X_4682048_SNP [dm6]	G	A	3.523e^-5	0.893	SYNONYMOUS_CODING Pp2C1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18983329	X_18983329_SNP [dm3] X_19089296_SNP [dm6]	G	A	3.564e^-5	0.893	INTERGENIC
2R	9308858	2R_9308858_SNP [dm3] 2R_13421353_SNP [dm6]	T	C	3.622e^-5	0.893	SYNONYMOUS_CODING CG42321
3R	25600917	3R_25600917_SNP [dm3] 3R_29775195_SNP [dm6]	A	T	3.668e^-5	0.893	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14818860	X_14818860_SNP [dm3] X_14924827_SNP [dm6]	T	C	3.720e^-5	0.893	INTRON Flo2
3R	25486259	3R_25486259_SNP [dm3] 3R_29660537_SNP [dm6]	A	T	3.781e^-5	0.893	UPSTREAM Dop1R2 INTERGENIC
2R	14245023	2R_14245023_SNP [dm3] 2R_18357518_SNP [dm6]	G	T	3.870e^-5	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5113619	2L_5113619_SNP [dm3] 2L_5113619_SNP [dm6]	C	T	3.912e^-5	0.893	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21581956	3R_21581956_SNP [dm3] 3R_25756234_SNP [dm6]	A	T	3.938e^-5	0.893	INTRON LpR1
3R	4009619	3R_4009619_SNP [dm3] 3R_8183897_SNP [dm6]	C	A	3.944e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6825155	2R_6825155_SNP [dm3] 2R_10937650_SNP [dm6]	A	C	3.970e^-5	0.893	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7705418	3L_7705418_SNP [dm3] 3L_7712318_SNP [dm6]	T	A	3.990e^-5	0.893	INTRON CG32373 & 1 other
2R	14245486	2R_14245486_SNP [dm3] 2R_18357981_SNP [dm6]	C	T	4.009e^-5	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12340849	3L_12340849_SNP [dm3] 3L_12347749_SNP [dm6]	G	A	4.028e^-5	0.893	SYNONYMOUS_CODING CrzR
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	4.040e^-5	0.893	INTRON Gfrl
X	505221	X_505221_DEL [dm3] X_611188_DEL [dm6]	CCCCACGAATACTGCACAAA...	C	4.048e^-5	0.893	UTR_3_PRIME CG13366 INTRON CG13366	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14428237	3R_14428237_SNP [dm3] 3R_18602515_SNP [dm6]	G	A	4.069e^-5	0.893	INTRON qin & 1 other
3R	25673500	3R_25673500_DEL [dm3] 3R_29847778_DEL [dm6]	TAATGT	T	4.096e^-5	0.893	INTRON Cad99C
3R	25673509	3R_25673509_SNP [dm3] 3R_29847787_SNP [dm6]	C	T	4.096e^-5	0.893	INTRON Cad99C
3L	20667234	3L_20667234_SNP [dm3] 3L_20674134_SNP [dm6]	G	A	4.112e^-5	0.893	INTERGENIC
3R	4514610	3R_4514610_SNP [dm3] 3R_8688888_SNP [dm6]	C	T	4.151e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10076757	2L_10076757_SNP [dm3] 2L_10076757_SNP [dm6]	T	C	4.183e^-5	0.893	INTRON CG44153	TF binding site mE1_TFBS_cad
X	561120	X_561120_SNP [dm3] X_667087_SNP [dm6]	A	G	4.192e^-5	0.893	INTERGENIC
X	20580471	X_20580471_SNP [dm3] X_20709444_SNP [dm6]	A	T	4.218e^-5	0.893	INTERGENIC	regulatory region REDfly_CRMs
3R	21581946	3R_21581946_SNP [dm3] 3R_25756224_SNP [dm6]	C	T	4.222e^-5	0.893	INTRON LpR1
3R	23998234	3R_23998234_SNP [dm3] 3R_28172512_SNP [dm6]	A	T	4.272e^-5	0.893	INTRON CG34354
X	21892943	X_21892943_SNP [dm3] X_22491107_SNP [dm6]	T	A	4.400e^-5	0.893	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
X	8813199	X_8813199_INS [dm3] X_8919166_INS [dm6]	G	GAG	4.629e^-5	0.893	DOWNSTREAM CR44111 INTRON rdgA
2R	15088579	2R_15088579_SNP [dm3] 2R_19201074_SNP [dm6]	A	G	4.632e^-5	0.893	INTRON hppy
2L	5113550	2L_5113550_SNP [dm3] 2L_5113550_SNP [dm6]	G	T	4.645e^-5	0.893	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4505288	2R_4505288_SNP [dm3] 2R_8617783_SNP [dm6]	G	T	4.651e^-5	0.893	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11418546	2L_11418546_SNP [dm3] 2L_11418546_SNP [dm6]	A	G	4.657e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14981531	3R_14981531_SNP [dm3] 3R_19155809_SNP [dm6]	C	G	4.659e^-5	0.893	INTRON CG11779	TF binding site mE1_TFBS_sens
X	18229558	X_18229558_SNP [dm3] X_18335525_SNP [dm6]	A	T	4.676e^-5	0.893	INTRON CG6123
3L	9440661	3L_9440661_SNP [dm3] 3L_9447561_SNP [dm6]	C	A	4.714e^-5	0.893	INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	15143970	3R_15143970_SNP [dm3] 3R_19318248_SNP [dm6]	T	A	4.719e^-5	0.893	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	20010887	3R_20010887_SNP [dm3] 3R_24185165_SNP [dm6]	C	G	4.763e^-5	0.893	INTERGENIC
3L	677215	3L_677215_SNP [dm3] 3L_677215_SNP [dm6]	C	T	4.812e^-5	0.893	DOWNSTREAM CG17129 INTERGENIC
2R	11700156	2R_11700156_SNP [dm3] 2R_15812651_SNP [dm6]	A	G	4.870e^-5	0.893	INTRON tun & 1 other
3R	5688359	3R_5688359_SNP [dm3] 3R_9862637_SNP [dm6]	T	A	4.920e^-5	0.893	INTRON Teh1
2L	10484777	2L_10484777_SNP [dm3] 2L_10484777_SNP [dm6]	A	T	5.022e^-5	0.893	DOWNSTREAM CG7456 INTRON Grip75	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7088954	X_7088954_SNP [dm3] X_7194921_SNP [dm6]	G	A	5.057e^-5	0.893	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24492880	3R_24492880_SNP [dm3] 3R_28667158_SNP [dm6]	A	G	5.144e^-5	0.893	INTERGENIC
2R	6596633	2R_6596633_SNP [dm3] 2R_10709128_SNP [dm6]	C	T	5.152e^-5	0.893	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14133624	3R_14133624_DEL [dm3] 3R_18307902_DEL [dm6]	TG	T	5.207e^-5	0.893	INTRON PKD	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14981738	3R_14981738_SNP [dm3] 3R_19156016_SNP [dm6]	A	G	5.231e^-5	0.893	SYNONYMOUS_CODING CG11779	TF binding site mE1_TFBS_sens
3L	22888702	3L_22888702_SNP [dm3] 3L_22895602_SNP [dm6]	A	G	5.255e^-5	0.893	UPSTREAM CR44688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10891132	X_10891132_SNP [dm3] X_10997099_SNP [dm6]	A	G	5.280e^-5	0.893	INTRON CG42339
3R	5902226	3R_5902226_DEL [dm3] 3R_10076504_DEL [dm6]	ACATGAA	A	5.288e^-5	0.893	INTERGENIC
3R	19029915	3R_19029915_SNP [dm3] 3R_23204193_SNP [dm6]	T	C	5.453e^-5	0.893	UPSTREAM fzo INTRON cnc
3R	15819052	3R_15819052_SNP [dm3] 3R_19993330_SNP [dm6]	T	C	5.459e^-5	0.893	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	11418510	2L_11418510_SNP [dm3] 2L_11418510_SNP [dm6]	A	T	5.555e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10926615	X_10926615_SNP [dm3] X_11032582_SNP [dm6]	A	T	5.592e^-5	0.893	INTRON CG42339
3L	16550997	3L_16550997_SNP [dm3] 3L_16557897_SNP [dm6]	T	C	5.643e^-5	0.893	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
2L	10340646	2L_10340646_SNP [dm3] 2L_10340646_SNP [dm6]	T	A	5.683e^-5	0.893	SYNONYMOUS_CODING SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl
2L	4857393	2L_4857393_SNP [dm3] 2L_4857393_SNP [dm6]	C	A	5.686e^-5	0.893	INTRON pog
3R	26807774	3R_26807774_SNP [dm3] 3R_30982052_SNP [dm6]	T	C	5.752e^-5	0.893	INTRON 5-HT7
3L	677998	3L_677998_SNP [dm3] 3L_677998_SNP [dm6]	A	G	5.823e^-5	0.893	UTR_3_PRIME CG17129
2L	19367571	2L_19367571_SNP [dm3] 2L_19367571_SNP [dm6]	C	T	5.849e^-5	0.893	INTERGENIC
2L	12179392	2L_12179392_SNP [dm3] 2L_12179392_SNP [dm6]	A	C	6.039e^-5	0.893	INTRON aret
3L	22663284	3L_22663284_SNP [dm3] 3L_22670184_SNP [dm6]	G	T	6.185e^-5	0.893	UPSTREAM mir-958 & 1 other INTRON CG14457	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16263186	2L_16263186_SNP [dm3] 2L_16263186_SNP [dm6]	C	G	6.341e^-5	0.893	SPLICE_SITE_REGION CG4935 DOWNSTREAM crp INTRON CG4935
3L	1706653	3L_1706653_SNP [dm3] 3L_1706653_SNP [dm6]	A	C	6.386e^-5	0.893	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18564571	3L_18564571_SNP [dm3] 3L_18571471_SNP [dm6]	T	G	6.419e^-5	0.893	INTRON AstC-R1
X	18229469	X_18229469_SNP [dm3] X_18335436_SNP [dm6]	G	A	6.436e^-5	0.893	INTRON CG6123
3L	1715765	3L_1715765_SNP [dm3] 3L_1715765_SNP [dm6]	C	T	6.569e^-5	0.893	UTR_3_PRIME drpr DOWNSTREAM CG7991
3R	4405673	3R_4405673_SNP [dm3] 3R_8579951_SNP [dm6]	T	C	6.599e^-5	0.893	INTRON 5-HT2B
3L	22562707	3L_22562707_SNP [dm3] 3L_22569607_SNP [dm6]	G	A	6.663e^-5	0.893	INTERGENIC
2R	11473243	2R_11473243_SNP [dm3] 2R_15585738_SNP [dm6]	A	T	6.741e^-5	0.893	INTERGENIC
3R	25673494	3R_25673494_SNP [dm3] 3R_29847772_SNP [dm6]	A	G	6.784e^-5	0.893	INTRON Cad99C
3R	14051740	3R_14051740_SNP [dm3] 3R_18226018_SNP [dm6]	T	A	6.896e^-5	0.893	UTR_5_PRIME CG7168 UPSTREAM Mdh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	2431595	3L_2431595_SNP [dm3] 3L_2431595_SNP [dm6]	A	T	7.127e^-5	0.893	INTRON CG45186
X	7088900	X_7088900_DEL [dm3] X_7194867_DEL [dm6]	GG	G	7.218e^-5	0.893	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13268622	2L_13268622_SNP [dm3] 2L_13268622_SNP [dm6]	A	G	7.221e^-5	0.893	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
2L	3708692	2L_3708692_SNP [dm3] 2L_3708692_SNP [dm6]	A	G	7.226e^-5	0.893	INTRON cutlet	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5965207	3L_5965207_SNP [dm3] 3L_5972107_SNP [dm6]	G	A	7.415e^-5	0.893	INTRON CG10479	TF binding site BDTNP1_TFBS_twi
3R	10859785	3R_10859785_SNP [dm3] 3R_15034063_SNP [dm6]	G	A	7.553e^-5	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18229470	X_18229470_SNP [dm3] X_18335437_SNP [dm6]	T	A	7.565e^-5	0.893	INTRON CG6123
3R	13785376	3R_13785376_SNP [dm3] 3R_17959654_SNP [dm6]	A	T	7.589e^-5	0.893	INTRON cpo
2L	639698	2L_639698_SNP [dm3] 2L_639698_SNP [dm6]	T	C	7.595e^-5	0.893	DOWNSTREAM ds INTERGENIC
X	18229456	X_18229456_DEL [dm3] X_18335423_DEL [dm6]	CCTGAGTGTGT...	C	7.597e^-5	0.893	INTRON CG6123
3R	24492552	3R_24492552_SNP [dm3] 3R_28666830_SNP [dm6]	C	T	7.610e^-5	0.893	INTERGENIC
2R	12452450	2R_12452450_SNP [dm3] 2R_16564945_SNP [dm6]	G	T	7.690e^-5	0.893	INTRON DAT
2L	12185197	2L_12185197_SNP [dm3] 2L_12185197_SNP [dm6]	G	C	7.752e^-5	0.893	INTRON aret
2L	12797217	2L_12797217_DEL [dm3] 2L_12797217_DEL [dm6]	GTT	A	7.758e^-5	0.893	INTERGENIC
2L	19441097	2L_19441097_SNP [dm3] 2L_19441097_SNP [dm6]	A	T	7.777e^-5	0.893	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12351595	2R_12351595_SNP [dm3] 2R_16464090_SNP [dm6]	C	A	7.989e^-5	0.893	INTERGENIC
2R	15865142	2R_15865142_SNP [dm3] 2R_19977637_SNP [dm6]	A	T	8.066e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14814333	X_14814333_SNP [dm3] X_14920300_SNP [dm6]	G	T	8.084e^-5	0.893	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
3R	7858834	3R_7858834_SNP [dm3] 3R_12033112_SNP [dm6]	A	G	8.192e^-5	0.893	UPSTREAM ssp5 INTERGENIC
3R	24243959	3R_24243959_SNP [dm3] 3R_28418237_SNP [dm6]	C	T	8.224e^-5	0.893	UTR_5_PRIME beat-VI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23323044	3R_23323044_SNP [dm3] 3R_27497322_SNP [dm6]	C	G	8.246e^-5	0.893	INTERGENIC
3R	23496832	3R_23496832_SNP [dm3] 3R_27671110_SNP [dm6]	G	A	8.287e^-5	0.893	SYNONYMOUS_CODING unc80
X	14818088	X_14818088_SNP [dm3] X_14924055_SNP [dm6]	C	T	8.405e^-5	0.893	UPSTREAM CG9503 INTRON Flo2
3R	24493130	3R_24493130_SNP [dm3] 3R_28667408_SNP [dm6]	A	T	8.467e^-5	0.893	INTERGENIC
2L	10381527	2L_10381527_SNP [dm3] 2L_10381527_SNP [dm6]	G	A	8.474e^-5	0.893	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
2R	8831716	2R_8831716_SNP [dm3] 2R_12944211_SNP [dm6]	T	A	8.548e^-5	0.893	INTRON Mdr49
2L	5764796	2L_5764796_SNP [dm3] 2L_5764796_SNP [dm6]	A	G	8.553e^-5	0.893	INTRON obst-E
3R	20408848	3R_20408848_SNP [dm3] 3R_24583126_SNP [dm6]	G	T	8.583e^-5	0.893	UTR_3_PRIME CG13625 UPSTREAM CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12066090	3R_12066090_SNP [dm3] 3R_16240368_SNP [dm6]	A	G	8.614e^-5	0.893	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11224257	3L_11224257_SNP [dm3] 3L_11231157_SNP [dm6]	A	G	8.631e^-5	0.893	DOWNSTREAM CR45405 & 1 other INTERGENIC
X	20551783	X_20551783_SNP [dm3] X_20680756_SNP [dm6]	G	A	8.635e^-5	0.893	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10938653	2L_10938653_SNP [dm3] 2L_10938653_SNP [dm6]	A	C	8.642e^-5	0.893	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2936925	X_2936925_SNP [dm3] X_3042892_SNP [dm6]	T	G	8.651e^-5	0.893	INTRON kirre
2R	15088562	2R_15088562_SNP [dm3] 2R_19201057_SNP [dm6]	T	A	8.665e^-5	0.893	INTRON hppy
2R	19141844	2R_19141844_SNP [dm3] 2R_23254321_SNP [dm6]	G	C	8.680e^-5	0.893	INTERGENIC
3L	4152399	3L_4152399_SNP [dm3] 3L_4152399_SNP [dm6]	T	A	8.683e^-5	0.893	UTR_3_PRIME CG1299	TF binding site mE1_TFBS_cad
2L	10484437	2L_10484437_SNP [dm3] 2L_10484437_SNP [dm6]	G	T	8.689e^-5	0.893	NON_SYNONYMOUS_CODING Grip75	TF binding site mE1_TFBS_HSA
3R	18116492	3R_18116492_SNP [dm3] 3R_22290770_SNP [dm6]	G	A	8.725e^-5	0.893	INTRON SKIP
X	14803070	X_14803070_INS [dm3] X_14909037_INS [dm6]	C	CAC	8.744e^-5	0.893	UTR_5_PRIME CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9338884	3L_9338884_SNP [dm3] 3L_9345784_SNP [dm6]	T	G	8.779e^-5	0.893	INTRON PGRP-LC
X	8813007	X_8813007_SNP [dm3] X_8918974_SNP [dm6]	T	C	8.875e^-5	0.893	DOWNSTREAM CR44111 INTRON rdgA
X	3631444	X_3631444_SNP [dm3] X_3737411_SNP [dm6]	G	C	8.888e^-5	0.893	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2001069	3L_2001069_INS [dm3] 3L_2001069_INS [dm6]	A	AA	8.963e^-5	0.893	INTERGENIC
3L	10332207	3L_10332207_SNP [dm3] 3L_10339107_SNP [dm6]	A	T	9.058e^-5	0.893	INTERGENIC
2R	11712675	2R_11712675_SNP [dm3] 2R_15825170_SNP [dm6]	G	C	9.084e^-5	0.893	INTRON tun	TF binding site mE1_TFBS_cad
3R	24493375	3R_24493375_SNP [dm3] 3R_28667653_SNP [dm6]	T	A	9.103e^-5	0.893	INTERGENIC
2L	19619285	2L_19619285_SNP [dm3] 2L_19619285_SNP [dm6]	A	G	9.119e^-5	0.893	INTRON Lar
2R	3602520	2R_3602520_SNP [dm3] 2R_7715015_SNP [dm6]	G	A	9.320e^-5	0.893	SYNONYMOUS_CODING CG1946 DOWNSTREAM CG1942
3L	12340923	3L_12340923_SNP [dm3] 3L_12347823_SNP [dm6]	C	T	9.364e^-5	0.893	NON_SYNONYMOUS_CODING CrzR
3R	15819111	3R_15819111_SNP [dm3] 3R_19993389_SNP [dm6]	C	G	9.396e^-5	0.893	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	11903579	X_11903579_SNP [dm3] X_12009546_SNP [dm6]	T	C	9.435e^-5	0.893	SYNONYMOUS_CODING CG1806 DOWNSTREAM CG1492
X	14818069	X_14818069_SNP [dm3] X_14924036_SNP [dm6]	T	A	9.584e^-5	0.893	UPSTREAM CG9503 INTRON Flo2
3L	23158490	3L_23158490_SNP [dm3] 3L_23165390_SNP [dm6]	T	A	9.679e^-5	0.893	INTERGENIC	transposable element FlyBase
3R	16764185	3R_16764185_SNP [dm3] 3R_20938463_SNP [dm6]	T	G	9.691e^-5	0.893	INTRON CG31191
2L	12604969	2L_12604969_SNP [dm3] 2L_12604969_SNP [dm6]	G	A	9.738e^-5	0.893	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	561200	X_561200_SNP [dm3] X_667167_SNP [dm6]	T	A	9.910e^-5	0.893	INTERGENIC
X	561201	X_561201_SNP [dm3] X_667168_SNP [dm6]	G	A	9.910e^-5	0.893	INTERGENIC
X	14814246	X_14814246_SNP [dm3] X_14920213_SNP [dm6]	C	T	1.011e^-4	0.893	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15824832	2R_15824832_SNP [dm3] 2R_19937327_SNP [dm6]	C	T	1.012e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	477622	3L_477622_SNP [dm3] 3L_477622_SNP [dm6]	T	A	1.020e^-4	0.893	INTRON klar
2L	5764370	2L_5764370_SNP [dm3] 2L_5764370_SNP [dm6]	T	A	1.039e^-4	0.893	INTRON obst-E	TF binding site mE1_TFBS_cad
3L	12340855	3L_12340855_SNP [dm3] 3L_12347755_SNP [dm6]	C	G	1.042e^-4	0.893	SYNONYMOUS_CODING CrzR
2L	19619270	2L_19619270_SNP [dm3] 2L_19619270_SNP [dm6]	C	T	1.043e^-4	0.893	INTRON Lar
2L	13205785	2L_13205785_SNP [dm3] 2L_13205785_SNP [dm6]	T	A	1.052e^-4	0.893	INTRON Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18490218	3R_18490218_SNP [dm3] 3R_22664496_SNP [dm6]	G	A	1.056e^-4	0.893	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7557416	2R_7557416_SNP [dm3] 2R_11669911_SNP [dm6]	A	G	1.062e^-4	0.893	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10196179	2L_10196179_SNP [dm3] 2L_10196179_SNP [dm6]	A	C	1.062e^-4	0.893	INTRON Sur
2R	10831088	2R_10831088_SNP [dm3] 2R_14943583_SNP [dm6]	T	C	1.075e^-4	0.893	DOWNSTREAM aPKC INTRON CG10257
2L	3232254	2L_3232254_SNP [dm3] 2L_3232254_SNP [dm6]	A	T	1.079e^-4	0.893	INTERGENIC
3R	21822107	3R_21822107_SNP [dm3] 3R_25996385_SNP [dm6]	C	T	1.080e^-4	0.893	NON_SYNONYMOUS_CODING CG43116 DOWNSTREAM Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10944181	X_10944181_SNP [dm3] X_11050148_SNP [dm6]	C	T	1.084e^-4	0.893	DOWNSTREAM CG11160 INTERGENIC
X	2944197	X_2944197_SNP [dm3] X_3050164_SNP [dm6]	A	T	1.088e^-4	0.893	INTRON kirre
X	2944225	X_2944225_SNP [dm3] X_3050192_SNP [dm6]	T	A	1.088e^-4	0.893	INTRON kirre
2L	879647	2L_879647_SNP [dm3] 2L_879647_SNP [dm6]	A	G	1.093e^-4	0.893	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24575444	3R_24575444_SNP [dm3] 3R_28749722_SNP [dm6]	T	A	1.095e^-4	0.893	INTRON CG10000
2R	11700290	2R_11700290_SNP [dm3] 2R_15812785_SNP [dm6]	C	G	1.096e^-4	0.893	INTRON tun & 1 other
3L	11061423	3L_11061423_SNP [dm3] 3L_11068323_SNP [dm6]	C	G	1.099e^-4	0.893	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101 DOWNSTREAM CG6310
2L	5957727	2L_5957727_SNP [dm3] 2L_5957727_SNP [dm6]	T	A	1.103e^-4	0.893	UPSTREAM CG13998 DOWNSTREAM Vm26Ac & 1 other INTERGENIC
3L	11196804	3L_11196804_SNP [dm3] 3L_11203704_SNP [dm6]	A	T	1.104e^-4	0.893	INTRON Plod
3R	19599434	3R_19599434_SNP [dm3] 3R_23773712_SNP [dm6]	A	G	1.104e^-4	0.893	SYNONYMOUS_CODING CG10208 UPSTREAM tst DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	10032780	3L_10032780_SNP [dm3] 3L_10039680_SNP [dm6]	C	A	1.107e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	1710665	3L_1710665_SNP [dm3] 3L_1710665_SNP [dm6]	C	T	1.108e^-4	0.893	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2R	4517406	2R_4517406_SNP [dm3] 2R_8629901_SNP [dm6]	C	T	1.109e^-4	0.893	SYNONYMOUS_CODING CG14749 DOWNSTREAM CG8635	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8712147	X_8712147_DEL [dm3] X_8818114_DEL [dm6]	TGT	T	1.113e^-4	0.893	INTERGENIC
X	21892423	X_21892423_SNP [dm3] X_22490587_SNP [dm6]	C	A	1.117e^-4	0.893	INTRON l_1_G0196 & 1 other
3R	25594912	3R_25594912_SNP [dm3] 3R_29769190_SNP [dm6]	C	T	1.125e^-4	0.893	INTRON kay
X	2944057	X_2944057_SNP [dm3] X_3050024_SNP [dm6]	A	T	1.130e^-4	0.893	INTRON kirre
2L	17967282	2L_17967282_DEL [dm3] 2L_17967282_DEL [dm6]	GTTAAA	T	1.140e^-4	0.893	INTRON CG5674 & 1 other	TF binding site mE1_TFBS_HSA
3L	822180	3L_822180_SNP [dm3] 3L_822180_SNP [dm6]	G	A	1.153e^-4	0.893	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	565750	X_565750_SNP [dm3] X_671717_SNP [dm6]	C	A	1.153e^-4	0.893	INTERGENIC
3R	23848442	3R_23848442_INS [dm3] 3R_28022720_INS [dm6]	A	AA	1.155e^-4	0.893	INTERGENIC
2R	6869186	2R_6869186_SNP [dm3] 2R_10981681_SNP [dm6]	C	T	1.156e^-4	0.893	UTR_3_PRIME luna
2L	10340637	2L_10340637_SNP [dm3] 2L_10340637_SNP [dm6]	C	T	1.162e^-4	0.893	SYNONYMOUS_CODING SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl
X	20949491	X_20949491_SNP [dm3] X_21078464_SNP [dm6]	T	A	1.162e^-4	0.893	UTR_3_PRIME bves INTRON bves
3R	19153304	3R_19153304_SNP [dm3] 3R_23327582_SNP [dm6]	T	C	1.163e^-4	0.893	INTRON pnt
X	16729863	X_16729863_SNP [dm3] X_16835830_SNP [dm6]	T	G	1.163e^-4	0.893	UPSTREAM CG13004 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11224079	3L_11224079_INS [dm3] 3L_11230979_INS [dm6]	GG	TAAATA	1.164e^-4	0.893	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	16380497	2L_16380497_SNP [dm3] 2L_16380497_SNP [dm6]	A	G	1.170e^-4	0.893	INTERGENIC
3R	18761555	3R_18761555_SNP [dm3] 3R_22935833_SNP [dm6]	C	T	1.172e^-4	0.893	INTRON klg
2L	12185198	2L_12185198_SNP [dm3] 2L_12185198_SNP [dm6]	T	C	1.173e^-4	0.893	INTRON aret
2L	12797298	2L_12797298_SNP [dm3] 2L_12797298_SNP [dm6]	C	A	1.173e^-4	0.893	INTERGENIC
2R	7389429	2R_7389429_SNP [dm3] 2R_11501924_SNP [dm6]	A	G	1.176e^-4	0.893	INTRON inv
3L	5965189	3L_5965189_SNP [dm3] 3L_5972089_SNP [dm6]	C	T	1.182e^-4	0.893	INTRON CG10479	TF binding site BDTNP1_TFBS_twi
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	1.182e^-4	0.893	DOWNSTREAM aPKC INTRON CG10257
X	14818201	X_14818201_SNP [dm3] X_14924168_SNP [dm6]	A	T	1.184e^-4	0.893	UPSTREAM CG9503 INTRON Flo2
3R	24950044	3R_24950044_SNP [dm3] 3R_29124322_SNP [dm6]	A	T	1.191e^-4	0.893	INTRON CG11880	TF binding site mE1_TFBS_h mE1_TFBS_sens
3L	7705266	3L_7705266_SNP [dm3] 3L_7712166_SNP [dm6]	A	G	1.198e^-4	0.893	INTRON CG32373 & 1 other
X	14815643	X_14815643_SNP [dm3] X_14921610_SNP [dm6]	C	T	1.199e^-4	0.893	UTR_5_PRIME CG9503 INTRON Flo2
2R	10831074	2R_10831074_SNP [dm3] 2R_14943569_SNP [dm6]	T	C	1.201e^-4	0.893	DOWNSTREAM aPKC INTRON CG10257
X	11678928	X_11678928_SNP [dm3] X_11784895_SNP [dm6]	G	T	1.212e^-4	0.893	INTERGENIC
2L	10363379	2L_10363379_SNP [dm3] 2L_10363379_SNP [dm6]	T	C	1.222e^-4	0.893	NON_SYNONYMOUS_CODING pim UPSTREAM Cand1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25815637	3R_25815637_SNP [dm3] 3R_29989915_SNP [dm6]	C	A	1.234e^-4	0.893	NON_SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12232556	2R_12232556_SNP [dm3] 2R_16345051_SNP [dm6]	G	T	1.237e^-4	0.893	SYNONYMOUS_CODING Nup62 UPSTREAM CG7997 DOWNSTREAM wcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14818173	X_14818173_SNP [dm3] X_14924140_SNP [dm6]	C	T	1.241e^-4	0.893	UPSTREAM CG9503 INTRON Flo2
X	14818185	X_14818185_SNP [dm3] X_14924152_SNP [dm6]	T	C	1.241e^-4	0.893	UPSTREAM CG9503 INTRON Flo2
3L	18406796	3L_18406796_SNP [dm3] 3L_18413696_SNP [dm6]	G	T	1.246e^-4	0.893	INTERGENIC
X	14818194	X_14818194_SNP [dm3] X_14924161_SNP [dm6]	T	C	1.249e^-4	0.893	UPSTREAM CG9503 INTRON Flo2
3R	4405719	3R_4405719_DEL [dm3] 3R_8579997_DEL [dm6]	ACCTT	A	1.258e^-4	0.893	INTRON 5-HT2B
2R	5124307	2R_5124307_SNP [dm3] 2R_9236802_SNP [dm6]	A	T	1.273e^-4	0.893	UPSTREAM Cyp4p2 INTRON hig
2R	15564421	2R_15564421_SNP [dm3] 2R_19676916_SNP [dm6]	G	T	1.283e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25199275	3R_25199275_SNP [dm3] 3R_29373553_SNP [dm6]	G	A	1.289e^-4	0.893	INTERGENIC
2L	1268782	2L_1268782_SNP [dm3] 2L_1268782_SNP [dm6]	A	G	1.299e^-4	0.893	INTRON robo3
3R	23285090	3R_23285090_SNP [dm3] 3R_27459368_SNP [dm6]	C	T	1.300e^-4	0.893	INTERGENIC
2R	15732999	2R_15732999_SNP [dm3] 2R_19845494_SNP [dm6]	G	A	1.302e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24967313	3R_24967313_SNP [dm3] 3R_29141591_SNP [dm6]	T	G	1.306e^-4	0.893	INTRON CG14516
X	18229493	X_18229493_SNP [dm3] X_18335460_SNP [dm6]	C	T	1.308e^-4	0.893	INTRON CG6123
X	17510201	X_17510201_SNP [dm3] X_17616168_SNP [dm6]	T	G	1.308e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7318001	X_7318001_SNP [dm3] X_7423968_SNP [dm6]	T	C	1.313e^-4	0.893	DOWNSTREAM CG15036 INTERGENIC
2L	5841073	2L_5841073_SNP [dm3] 2L_5841073_SNP [dm6]	C	T	1.315e^-4	0.893	INTRON TrissinR
3L	677269	3L_677269_SNP [dm3] 3L_677269_SNP [dm6]	G	T	1.318e^-4	0.893	DOWNSTREAM CG17129 INTERGENIC
2R	21095572	2R_21095572_DEL [dm3] 2R_25208049_DEL [dm6]	AA	A	1.319e^-4	0.893	INTRON CG9380
3R	25673563	3R_25673563_SNP [dm3] 3R_29847841_SNP [dm6]	C	T	1.326e^-4	0.893	INTRON Cad99C
X	11046652	X_11046652_DEL [dm3] X_11152619_DEL [dm6]	GTG	G	1.327e^-4	0.893	UTR_3_PRIME rtv DOWNSTREAM Lint-1
3R	14051553	3R_14051553_SNP [dm3] 3R_18225831_SNP [dm6]	A	C	1.335e^-4	0.893	SPLICE_SITE_REGION CG7168 UTR_5_PRIME CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14818190	X_14818190_SNP [dm3] X_14924157_SNP [dm6]	C	A	1.336e^-4	0.893	UPSTREAM CG9503 INTRON Flo2
3R	24575432	3R_24575432_SNP [dm3] 3R_28749710_SNP [dm6]	T	C	1.340e^-4	0.893	INTRON CG10000
2L	5840851	2L_5840851_SNP [dm3] 2L_5840851_SNP [dm6]	G	A	1.350e^-4	0.893	INTRON TrissinR
X	503572	X_503572_SNP [dm3] X_609539_SNP [dm6]	T	C	1.352e^-4	0.893	INTRON CG13366
X	11046690	X_11046690_DEL [dm3] X_11152657_DEL [dm6]	TC	T	1.353e^-4	0.893	UTR_3_PRIME rtv DOWNSTREAM Lint-1
3R	25673524	3R_25673524_DEL [dm3] 3R_29847802_DEL [dm6]	TGG	C	1.353e^-4	0.893	INTRON Cad99C
3R	5121233	3R_5121233_SNP [dm3] 3R_9295511_SNP [dm6]	T	G	1.357e^-4	0.893	SYNONYMOUS_CODING CG8861
2R	10831085	2R_10831085_SNP [dm3] 2R_14943580_SNP [dm6]	G	T	1.365e^-4	0.893	DOWNSTREAM aPKC INTRON CG10257
3L	8748497	3L_8748497_SNP [dm3] 3L_8755397_SNP [dm6]	T	C	1.368e^-4	0.893	UPSTREAM CG6576 INTRON Fhos
2L	18125763	2L_18125763_DEL [dm3] 2L_18125763_DEL [dm6]	CATACTTTGTTC...	C	1.374e^-4	0.893	UPSTREAM CG31785 INTRON CG5758
2L	14285890	2L_14285890_SNP [dm3] 2L_14285890_SNP [dm6]	T	C	1.375e^-4	0.893	INTRON wb
3L	12340732	3L_12340732_SNP [dm3] 3L_12347632_SNP [dm6]	A	G	1.377e^-4	0.893	SYNONYMOUS_CODING CrzR
2R	4501613	2R_4501613_SNP [dm3] 2R_8614108_SNP [dm6]	C	G	1.378e^-4	0.893	SYNONYMOUS_CODING CG8642 UPSTREAM Cirl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	3232163	2L_3232163_SNP [dm3] 2L_3232163_SNP [dm6]	T	C	1.392e^-4	0.893	INTERGENIC
3R	9593291	3R_9593291_SNP [dm3] 3R_13767569_SNP [dm6]	C	A	1.397e^-4	0.893	UTR_5_PRIME Cht5 DOWNSTREAM CG9312
3R	24950041	3R_24950041_SNP [dm3] 3R_29124319_SNP [dm6]	T	C	1.398e^-4	0.893	INTRON CG11880	TF binding site mE1_TFBS_h mE1_TFBS_sens
3R	24950043	3R_24950043_SNP [dm3] 3R_29124321_SNP [dm6]	C	T	1.398e^-4	0.893	INTRON CG11880	TF binding site mE1_TFBS_h mE1_TFBS_sens
3L	10183342	3L_10183342_SNP [dm3] 3L_10190242_SNP [dm6]	T	A	1.407e^-4	0.893	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7750220	3L_7750220_SNP [dm3] 3L_7757120_SNP [dm6]	A	C	1.409e^-4	0.893	NON_SYNONYMOUS_CODING CG32373
3R	25673649	3R_25673649_SNP [dm3] 3R_29847927_SNP [dm6]	C	T	1.413e^-4	0.893	INTRON Cad99C
3L	2266261	3L_2266261_SNP [dm3] 3L_2266261_SNP [dm6]	G	A	1.414e^-4	0.893	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3059438	2L_3059438_SNP [dm3] 2L_3059438_SNP [dm6]	T	G	1.417e^-4	0.893	INTRON CG3523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	24543342	3R_24543342_SNP [dm3] 3R_28717620_SNP [dm6]	G	C	1.424e^-4	0.893	INTRON htt	TF binding site mE1_TFBS_chinmo
3L	10032213	3L_10032213_SNP [dm3] 3L_10039113_SNP [dm6]	G	T	1.425e^-4	0.893	INTRON dpr6
3L	1714384	3L_1714384_SNP [dm3] 3L_1714384_SNP [dm6]	G	A	1.427e^-4	0.893	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23488833	3R_23488833_SNP [dm3] 3R_27663111_SNP [dm6]	C	G	1.428e^-4	0.893	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2405677	3L_2405677_SNP [dm3] 3L_2405677_SNP [dm6]	C	G	1.429e^-4	0.893	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7191733	3R_7191733_SNP [dm3] 3R_11366011_SNP [dm6]	C	G	1.431e^-4	0.893	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10264808	2L_10264808_SNP [dm3] 2L_10264808_SNP [dm6]	C	T	1.437e^-4	0.893	SYNONYMOUS_CODING CG18619 UPSTREAM Mob3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12801621	2L_12801621_SNP [dm3] 2L_12801621_SNP [dm6]	T	G	1.441e^-4	0.893	INTERGENIC
3L	11224000	3L_11224000_SNP [dm3] 3L_11230900_SNP [dm6]	A	C	1.444e^-4	0.893	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	24575435	3R_24575435_SNP [dm3] 3R_28749713_SNP [dm6]	A	T	1.444e^-4	0.893	INTRON CG10000
X	20562314	X_20562314_SNP [dm3] X_20691287_SNP [dm6]	T	A	1.444e^-4	0.893	UPSTREAM CR45610 INTRON run	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	18277096	2L_18277096_SNP [dm3] 2L_18277096_SNP [dm6]	G	T	1.450e^-4	0.893	INTERGENIC
3L	7705240	3L_7705240_SNP [dm3] 3L_7712140_SNP [dm6]	G	T	1.454e^-4	0.893	INTRON CG32373 & 1 other
X	14814759	X_14814759_SNP [dm3] X_14920726_SNP [dm6]	G	A	1.467e^-4	0.893	SYNONYMOUS_CODING CG9503 INTRON Flo2
2L	9520866	2L_9520866_SNP [dm3] 2L_9520866_SNP [dm6]	A	T	1.480e^-4	0.893	UPSTREAM Oatp30B DOWNSTREAM CG33298 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	19014911	3L_19014911_SNP [dm3] 3L_19021811_SNP [dm6]	T	C	1.488e^-4	0.893	INTRON nkd
3R	11331376	3R_11331376_SNP [dm3] 3R_15505654_SNP [dm6]	G	A	1.489e^-4	0.893	INTERGENIC
X	21895556	X_21895556_SNP [dm3] X_22493720_SNP [dm6]	A	G	1.495e^-4	0.893	SYNONYMOUS_CODING l_1_G0196
3R	20228418	3R_20228418_SNP [dm3] 3R_24402696_SNP [dm6]	G	T	1.503e^-4	0.893	INTRON nAChRalpha1
X	7318002	X_7318002_SNP [dm3] X_7423969_SNP [dm6]	A	T	1.517e^-4	0.893	DOWNSTREAM CG15036 INTERGENIC
3R	25598400	3R_25598400_INS [dm3] 3R_29772678_INS [dm6]	G	GTCTCT	1.526e^-4	0.893	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	20716658	3L_20716658_SNP [dm3] 3L_20723558_SNP [dm6]	A	G	1.527e^-4	0.893	INTERGENIC
X	13008467	X_13008467_SNP [dm3] X_13114434_SNP [dm6]	C	A	1.528e^-4	0.893	UPSTREAM CG42237 INTERGENIC
3L	3695245	3L_3695245_SNP [dm3] 3L_3695245_SNP [dm6]	T	C	1.531e^-4	0.893	INTERGENIC
3R	24015214	3R_24015214_SNP [dm3] 3R_28189492_SNP [dm6]	T	G	1.548e^-4	0.893	INTRON CG34354
2L	8103557	2L_8103557_SNP [dm3] 2L_8103557_SNP [dm6]	A	G	1.559e^-4	0.893	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	10423761	3L_10423761_SNP [dm3] 3L_10430661_SNP [dm6]	A	G	1.560e^-4	0.893	SYNONYMOUS_CODING Ir67b
3L	7413395	3L_7413395_SNP [dm3] 3L_7420295_SNP [dm6]	T	C	1.567e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14260449	2L_14260449_SNP [dm3] 2L_14260449_SNP [dm6]	C	T	1.569e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	12179505	2L_12179505_SNP [dm3] 2L_12179505_SNP [dm6]	C	G	1.572e^-4	0.893	INTRON aret
3R	7188363	3R_7188363_SNP [dm3] 3R_11362641_SNP [dm6]	G	A	1.573e^-4	0.893	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	11387865	2R_11387865_SNP [dm3] 2R_15500360_SNP [dm6]	G	A	1.581e^-4	0.893	SYNONYMOUS_CODING Ir52a
3L	10102136	3L_10102136_INS [dm3] 3L_10109036_INS [dm6]	C	TACTCAT	1.593e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5965248	3L_5965248_SNP [dm3] 3L_5972148_SNP [dm6]	A	T	1.605e^-4	0.893	INTRON CG10479	TF binding site BDTNP1_TFBS_twi
3R	25973912	3R_25973912_SNP [dm3] 3R_30148190_SNP [dm6]	A	T	1.607e^-4	0.893	INTRON AdoR
X	1546256	X_1546256_SNP [dm3] X_1652223_SNP [dm6]	G	A	1.610e^-4	0.893	UPSTREAM CG11509 INTRON Mur2B & 1 other
2L	10381662	2L_10381662_SNP [dm3] 2L_10381662_SNP [dm6]	C	T	1.613e^-4	0.893	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
2L	10938544	2L_10938544_SNP [dm3] 2L_10938544_SNP [dm6]	A	C	1.618e^-4	0.893	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
X	8927863	X_8927863_SNP [dm3] X_9033830_SNP [dm6]	G	A	1.618e^-4	0.893	INTRON CR43836 & 1 other
3R	11754712	3R_11754712_SNP [dm3] 3R_15928990_SNP [dm6]	G	A	1.619e^-4	0.893	INTRON CG4221
2L	3232147	2L_3232147_SNP [dm3] 2L_3232147_SNP [dm6]	A	G	1.621e^-4	0.893	INTERGENIC
2L	12801616	2L_12801616_SNP [dm3] 2L_12801616_SNP [dm6]	T	C	1.623e^-4	0.893	INTERGENIC
3L	9623419	3L_9623419_INS [dm3] 3L_9630319_INS [dm6]	C	CGAGATTGAGGCC...	1.625e^-4	0.893	INTRON CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25306110	3R_25306110_SNP [dm3] 3R_29480388_SNP [dm6]	T	A	1.635e^-4	0.893	INTRON Ptp99A
3L	10103736	3L_10103736_SNP [dm3] 3L_10110636_SNP [dm6]	T	G	1.635e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	16510707	2L_16510707_SNP [dm3] 2L_16510707_SNP [dm6]	C	A	1.636e^-4	0.893	NON_SYNONYMOUS_CODING CG5953	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	679759	3L_679759_SNP [dm3] 3L_679759_SNP [dm6]	A	G	1.643e^-4	0.893	UTR_5_PRIME CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8944353	2R_8944353_SNP [dm3] 2R_13056848_SNP [dm6]	T	C	1.659e^-4	0.893	UTR_3_PRIME Drl-2
3R	24954044	3R_24954044_SNP [dm3] 3R_29128322_SNP [dm6]	T	C	1.659e^-4	0.893	DOWNSTREAM dgt6 & 1 other INTERGENIC
2L	18125935	2L_18125935_SNP [dm3] 2L_18125935_SNP [dm6]	C	A	1.670e^-4	0.893	UPSTREAM CG31785 INTRON CG5758
2L	3025654	2L_3025654_SNP [dm3] 2L_3025654_SNP [dm6]	C	T	1.693e^-4	0.893	DOWNSTREAM CG3605 INTRON CG3542
3R	20011065	3R_20011065_SNP [dm3] 3R_24185343_SNP [dm6]	A	G	1.715e^-4	0.893	INTERGENIC	transposable element FlyBase
3L	7705417	3L_7705417_SNP [dm3] 3L_7712317_SNP [dm6]	C	A	1.720e^-4	0.893	INTRON CG32373 & 1 other
3L	15953882	3L_15953882_SNP [dm3] 3L_15960782_SNP [dm6]	C	T	1.724e^-4	0.893	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
3L	1482871	3L_1482871_SNP [dm3] 3L_1482871_SNP [dm6]	C	T	1.727e^-4	0.893	INTRON stet	TF binding site mE1_TFBS_cad
2L	6157009	2L_6157009_SNP [dm3] 2L_6157009_SNP [dm6]	T	A	1.738e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	11793728	X_11793728_SNP [dm3] X_11899695_SNP [dm6]	T	A	1.747e^-4	0.893	UTR_3_PRIME wisp DOWNSTREAM Upf1
X	14813549	X_14813549_SNP [dm3] X_14919516_SNP [dm6]	T	C	1.747e^-4	0.893	UTR_3_PRIME CG9503 UPSTREAM Eo INTRON Flo2	TF binding site mE1_TFBS_cad
2L	12768969	2L_12768969_SNP [dm3] 2L_12768969_SNP [dm6]	C	T	1.753e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13924240	2L_13924240_SNP [dm3] 2L_13924240_SNP [dm6]	A	G	1.758e^-4	0.893	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11300513	X_11300513_SNP [dm3] X_11406480_SNP [dm6]	T	C	1.761e^-4	0.893	UTR_3_PRIME dlg1
2R	12053634	2R_12053634_SNP [dm3] 2R_16166129_SNP [dm6]	T	G	1.769e^-4	0.893	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
2R	12351173	2R_12351173_SNP [dm3] 2R_16463668_SNP [dm6]	A	C	1.769e^-4	0.893	INTERGENIC
2R	6825205	2R_6825205_SNP [dm3] 2R_10937700_SNP [dm6]	T	C	1.771e^-4	0.893	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11418475	2L_11418475_SNP [dm3] 2L_11418475_SNP [dm6]	A	G	1.771e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18242141	X_18242141_SNP [dm3] X_18348108_SNP [dm6]	T	C	1.775e^-4	0.893	INTRON CG6123
3L	4981165	3L_4981165_SNP [dm3] 3L_4981165_SNP [dm6]	C	T	1.788e^-4	0.893	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3R	1939115	3R_1939115_SNP [dm3] 3R_6113393_SNP [dm6]	C	T	1.789e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs
3L	16488310	3L_16488310_SNP [dm3] 3L_16495210_SNP [dm6]	A	C	1.792e^-4	0.893	UTR_5_PRIME CG42514 INTRON CG33158 & 2 others	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	26855097	3R_26855097_SNP [dm3] 3R_31029375_SNP [dm6]	A	C	1.792e^-4	0.893	INTERGENIC
3R	26756584	3R_26756584_SNP [dm3] 3R_30930862_SNP [dm6]	A	T	1.792e^-4	0.893	DOWNSTREAM Ptx1 INTERGENIC
3L	5506361	3L_5506361_SNP [dm3] 3L_5513261_SNP [dm6]	C	G	1.797e^-4	0.893	SYNONYMOUS_CODING Lkr
3L	7200692	3L_7200692_SNP [dm3] 3L_7207592_SNP [dm6]	C	A	1.798e^-4	0.893	INTERGENIC
2L	18125933	2L_18125933_SNP [dm3] 2L_18125933_SNP [dm6]	A	T	1.799e^-4	0.893	UPSTREAM CG31785 INTRON CG5758
X	11793701	X_11793701_SNP [dm3] X_11899668_SNP [dm6]	G	C	1.810e^-4	0.893	UTR_3_PRIME wisp DOWNSTREAM Upf1
X	6436125	X_6436125_SNP [dm3] X_6542092_SNP [dm6]	T	C	1.813e^-4	0.893	INTRON CG34417
2L	16874536	2L_16874536_SNP [dm3] 2L_16874536_SNP [dm6]	G	T	1.815e^-4	0.893	INTRON CR31781
2L	12797247	2L_12797247_SNP [dm3] 2L_12797247_SNP [dm6]	C	T	1.842e^-4	0.893	INTERGENIC
2R	10808489	2R_10808489_INS [dm3] 2R_14920984_INS [dm6]	G	GAG	1.850e^-4	0.893	INTRON CG10249
2R	13367189	2R_13367189_SNP [dm3] 2R_17479684_SNP [dm6]	A	T	1.855e^-4	0.893	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	1.856e^-4	0.893	INTRON CG42671	TF binding site mE1_TFBS_cad
3L	13677824	3L_13677824_SNP [dm3] 3L_13684724_SNP [dm6]	C	G	1.857e^-4	0.893	INTRON bru-3
X	4782055	X_4782055_SNP [dm3] X_4888022_SNP [dm6]	A	G	1.860e^-4	0.893	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18125877	2L_18125877_INS [dm3] 2L_18125877_INS [dm6]	T	TT	1.865e^-4	0.893	UPSTREAM CG31785 INTRON CG5758
3R	4223289	3R_4223289_SNP [dm3] 3R_8397567_SNP [dm6]	G	T	1.866e^-4	0.893	SYNONYMOUS_CODING CG45263
2L	6157129	2L_6157129_SNP [dm3] 2L_6157129_SNP [dm6]	A	T	1.868e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9651379	3L_9651379_DEL [dm3] 3L_9658279_DEL [dm6]	GA	T	1.869e^-4	0.893	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3R	7899228	3R_7899228_SNP [dm3] 3R_12073506_SNP [dm6]	C	G	1.872e^-4	0.893	SYNONYMOUS_CODING CG14741
3L	9526271	3L_9526271_SNP [dm3] 3L_9533171_SNP [dm6]	T	C	1.874e^-4	0.893	INTERGENIC
3L	3896322	3L_3896322_SNP [dm3] 3L_3896322_SNP [dm6]	G	A	1.889e^-4	0.893	SYNONYMOUS_CODING Gr63a UPSTREAM CG14977	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12768879	2L_12768879_INS [dm3] 2L_12768879_INS [dm6]	T	TGT	1.889e^-4	0.893	INTERGENIC
2R	14243200	2R_14243200_SNP [dm3] 2R_18355695_SNP [dm6]	T	G	1.890e^-4	0.893	UTR_5_PRIME sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23573825	3R_23573825_SNP [dm3] 3R_27748103_SNP [dm6]	T	A	1.892e^-4	0.893	UTR_3_PRIME Ets98B DOWNSTREAM Ets98B
2L	18125910	2L_18125910_SNP [dm3] 2L_18125910_SNP [dm6]	C	A	1.897e^-4	0.893	UPSTREAM CG31785 INTRON CG5758
3R	14981621	3R_14981621_SNP [dm3] 3R_19155899_SNP [dm6]	A	G	1.899e^-4	0.893	SYNONYMOUS_CODING CG11779	TF binding site mE1_TFBS_sens
3R	17556064	3R_17556064_SNP [dm3] 3R_21730342_SNP [dm6]	C	G	1.906e^-4	0.893	UPSTREAM CR43096 INTERGENIC
2R	14245700	2R_14245700_SNP [dm3] 2R_18358195_SNP [dm6]	A	G	1.907e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18075444	2L_18075444_SNP [dm3] 2L_18075444_SNP [dm6]	A	G	1.908e^-4	0.893	INTERGENIC
2L	19441100	2L_19441100_SNP [dm3] 2L_19441100_SNP [dm6]	G	T	1.915e^-4	0.893	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24493172	3R_24493172_SNP [dm3] 3R_28667450_SNP [dm6]	C	G	1.923e^-4	0.893	INTERGENIC
X	3631169	X_3631169_SNP [dm3] X_3737136_SNP [dm6]	G	A	1.926e^-4	0.893	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1697073	2R_1697073_SNP [dm3] 2R_5809568_SNP [dm6]	C	T	1.932e^-4	0.893	INTRON dpr12
2R	16121015	2R_16121015_SNP [dm3] 2R_20233510_SNP [dm6]	C	T	1.933e^-4	0.893	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2L	11530418	2L_11530418_SNP [dm3] 2L_11530418_SNP [dm6]	C	T	1.933e^-4	0.893	INTRON CG31706
2L	18991319	2L_18991319_SNP [dm3] 2L_18991319_SNP [dm6]	A	G	1.933e^-4	0.893	NON_SYNONYMOUS_CODING CG15169	TF binding site mE1_TFBS_sens
2R	10948694	2R_10948694_SNP [dm3] 2R_15061189_SNP [dm6]	T	C	1.939e^-4	0.893	INTERGENIC
3L	9623487	3L_9623487_SNP [dm3] 3L_9630387_SNP [dm6]	A	C	1.942e^-4	0.893	SYNONYMOUS_CODING CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11793717	X_11793717_SNP [dm3] X_11899684_SNP [dm6]	A	G	1.943e^-4	0.893	UTR_3_PRIME wisp DOWNSTREAM Upf1
3R	2023540	3R_2023540_SNP [dm3] 3R_6197818_SNP [dm6]	C	A	1.948e^-4	0.893	UPSTREAM Osi24 INTERGENIC
3L	9221105	3L_9221105_SNP [dm3] 3L_9228005_SNP [dm6]	C	G	1.949e^-4	0.893	INTERGENIC
X	14808816	X_14808816_SNP [dm3] X_14914783_SNP [dm6]	T	A	1.952e^-4	0.893	UPSTREAM CG12398 INTRON Flo2
3R	23365928	3R_23365928_SNP [dm3] 3R_27540206_SNP [dm6]	G	A	1.955e^-4	0.893	INTERGENIC
3L	681813	3L_681813_SNP [dm3] 3L_681813_SNP [dm6]	C	A	1.957e^-4	0.893	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26854438	3R_26854438_SNP [dm3] 3R_31028716_SNP [dm6]	A	C	1.960e^-4	0.893	INTERGENIC
3L	7705207	3L_7705207_SNP [dm3] 3L_7712107_SNP [dm6]	G	T	1.964e^-4	0.893	INTRON CG32373 & 1 other
3R	10853788	3R_10853788_SNP [dm3] 3R_15028066_SNP [dm6]	A	T	1.969e^-4	0.893	INTERGENIC
3R	19208031	3R_19208031_SNP [dm3] 3R_23382309_SNP [dm6]	T	G	1.970e^-4	0.893	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24968814	3R_24968814_DEL [dm3] 3R_29143092_DEL [dm6]	AATC	G	1.975e^-4	0.893	INTRON CG14516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24575434	3R_24575434_SNP [dm3] 3R_28749712_SNP [dm6]	T	G	1.985e^-4	0.893	INTRON CG10000
X	9285037	X_9285037_DEL [dm3] X_9391004_DEL [dm6]	TT	T	1.986e^-4	0.893	INTRON mgl
3L	4981119	3L_4981119_SNP [dm3] 3L_4981119_SNP [dm6]	A	G	1.987e^-4	0.893	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3L	1071260	3L_1071260_DEL [dm3] 3L_1071260_DEL [dm6]	CTTCGCTCTGC...	C	1.992e^-4	0.893	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3R	2698673	3R_2698673_SNP [dm3] 3R_6872951_SNP [dm6]	G	T	2.007e^-4	0.893	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	13145472	X_13145472_SNP [dm3] X_13251439_SNP [dm6]	G	A	2.013e^-4	0.893	INTRON mew	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25345986	3R_25345986_SNP [dm3] 3R_29520264_SNP [dm6]	C	G	2.032e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5752383	2L_5752383_SNP [dm3] 2L_5752383_SNP [dm6]	G	A	2.046e^-4	0.893	INTRON CG11030
2R	4161271	2R_4161271_SNP [dm3] 2R_8273766_SNP [dm6]	C	A	2.048e^-4	0.893	INTERGENIC
2L	5762938	2L_5762938_SNP [dm3] 2L_5762938_SNP [dm6]	G	A	2.054e^-4	0.893	SYNONYMOUS_CODING obst-E DOWNSTREAM CG11030 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	3025657	2L_3025657_SNP [dm3] 2L_3025657_SNP [dm6]	G	T	2.055e^-4	0.893	DOWNSTREAM CG3605 INTRON CG3542
3R	20232351	3R_20232351_SNP [dm3] 3R_24406629_SNP [dm6]	A	T	2.057e^-4	0.893	INTRON nAChRalpha1
3L	16754706	3L_16754706_INS [dm3] 3L_16761606_INS [dm6]	C	CGT	2.061e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	25973929	3R_25973929_SNP [dm3] 3R_30148207_SNP [dm6]	C	A	2.068e^-4	0.893	INTRON AdoR
3L	10449191	3L_10449191_SNP [dm3] 3L_10456091_SNP [dm6]	T	C	2.070e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3019808	2L_3019808_SNP [dm3] 2L_3019808_SNP [dm6]	C	T	2.072e^-4	0.893	SYNONYMOUS_CODING CG17264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18919448	2L_18919448_DEL [dm3] 2L_18919448_DEL [dm6]	AA	A	2.074e^-4	0.893	INTRON ssp3
3R	2155026	3R_2155026_SNP [dm3] 3R_6329304_SNP [dm6]	A	G	2.076e^-4	0.893	UPSTREAM Osi18 INTERGENIC
3R	24492691	3R_24492691_INS [dm3] 3R_28666969_INS [dm6]	C	CAACTGTACC	2.077e^-4	0.893	INTERGENIC
3R	16425423	3R_16425423_DEL [dm3] 3R_20599701_DEL [dm6]	TGA	T	2.080e^-4	0.893	INTRON bon
2L	20755305	2L_20755305_SNP [dm3] 2L_20755305_SNP [dm6]	A	T	2.085e^-4	0.893	DOWNSTREAM Ns4 INTRON CG9323
3L	10101974	3L_10101974_SNP [dm3] 3L_10108874_SNP [dm6]	T	C	2.095e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
3L	10104180	3L_10104180_SNP [dm3] 3L_10111080_SNP [dm6]	C	G	2.095e^-4	0.893	INTRON dpr6
3R	3847189	3R_3847189_SNP [dm3] 3R_8021467_SNP [dm6]	C	G	2.099e^-4	0.893	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad
2L	12797120	2L_12797120_SNP [dm3] 2L_12797120_SNP [dm6]	C	T	2.106e^-4	0.893	INTERGENIC
X	12963363	X_12963363_INS [dm3] X_13069330_INS [dm6]	G	GGCTT	2.111e^-4	0.893	INTRON rad
X	14813915	X_14813915_SNP [dm3] X_14919882_SNP [dm6]	G	T	2.115e^-4	0.893	NON_SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	10103614	3L_10103614_SNP [dm3] 3L_10110514_SNP [dm6]	T	C	2.115e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	14814165	X_14814165_SNP [dm3] X_14920132_SNP [dm6]	G	A	2.118e^-4	0.893	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	513931	X_513931_DEL [dm3] X_619898_DEL [dm6]	GCAATG	G	2.119e^-4	0.893	UPSTREAM CR45474 & 1 other DOWNSTREAM CG13365 INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15475538	2R_15475538_SNP [dm3] 2R_19588033_SNP [dm6]	C	A	2.120e^-4	0.893	DOWNSTREAM CG42878 INTRON sm
2L	3014566	2L_3014566_SNP [dm3] 2L_3014566_SNP [dm6]	G	A	2.139e^-4	0.893	SYNONYMOUS_CODING CG17265
3R	20010998	3R_20010998_SNP [dm3] 3R_24185276_SNP [dm6]	G	T	2.140e^-4	0.893	INTERGENIC	transposable element FlyBase
2L	18070217	2L_18070217_SNP [dm3] 2L_18070217_SNP [dm6]	C	T	2.142e^-4	0.893	UTR_3_PRIME rdo
3L	7265943	3L_7265943_SNP [dm3] 3L_7272843_SNP [dm6]	C	T	2.144e^-4	0.893	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4588120	X_4588120_SNP [dm3] X_4694087_SNP [dm6]	C	T	2.150e^-4	0.893	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	542300	3R_542300_SNP [dm3] 3R_4716578_SNP [dm6]	A	G	2.155e^-4	0.893	INTERGENIC	transposable element FlyBase
X	512453	X_512453_DEL [dm3] X_618420_DEL [dm6]	GGGTTCAAAGCCCCCGG...	G	2.155e^-4	0.893	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
2L	1343153	2L_1343153_SNP [dm3] 2L_1343153_SNP [dm6]	A	T	2.173e^-4	0.893	DOWNSTREAM CG33922 INTERGENIC
2R	11843791	2R_11843791_SNP [dm3] 2R_15956286_SNP [dm6]	C	A	2.176e^-4	0.893	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24948319	3R_24948319_SNP [dm3] 3R_29122597_SNP [dm6]	C	A	2.176e^-4	0.893	START_GAINED yem UTR_5_PRIME yem UPSTREAM CG11880	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	561207	X_561207_SNP [dm3] X_667174_SNP [dm6]	C	A	2.188e^-4	0.893	INTERGENIC
3L	10103735	3L_10103735_SNP [dm3] 3L_10110635_SNP [dm6]	T	C	2.195e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	2546835	2L_2546835_SNP [dm3] 2L_2546835_SNP [dm6]	T	A	2.201e^-4	0.893	INTERGENIC
2L	22128100	2L_22128100_SNP [dm3] 2L_22128100_SNP [dm6]	C	A	2.204e^-4	0.893	UTR_3_PRIME CycK DOWNSTREAM CycK	transposable element FlyBase
3R	25973904	3R_25973904_SNP [dm3] 3R_30148182_SNP [dm6]	T	C	2.213e^-4	0.893	INTRON AdoR
2L	879628	2L_879628_SNP [dm3] 2L_879628_SNP [dm6]	G	A	2.214e^-4	0.893	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13162602	3L_13162602_SNP [dm3] 3L_13169502_SNP [dm6]	G	A	2.217e^-4	0.893	INTERGENIC
2R	4497671	2R_4497671_SNP [dm3] 2R_8610166_SNP [dm6]	C	T	2.217e^-4	0.893	SYNONYMOUS_CODING rgr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	774853	2L_774853_SNP [dm3] 2L_774853_SNP [dm6]	T	A	2.222e^-4	0.893	DOWNSTREAM CG12506 INTERGENIC
3R	14913754	3R_14913754_SNP [dm3] 3R_19088032_SNP [dm6]	T	A	2.227e^-4	0.893	UTR_5_PRIME cdi
2R	12414503	2R_12414503_INS [dm3] 2R_16526998_INS [dm6]	G	GGCATAA	2.233e^-4	0.893	INTRON Sema-2a
3R	22328993	3R_22328993_SNP [dm3] 3R_26503271_SNP [dm6]	T	C	2.239e^-4	0.893	INTRON plum	TF binding site BDTNP1_TFBS_dl
2L	3084201	2L_3084201_SNP [dm3] 2L_3084201_SNP [dm6]	T	G	2.246e^-4	0.893	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14242886	2R_14242886_SNP [dm3] 2R_18355381_SNP [dm6]	A	G	2.246e^-4	0.893	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10183287	3L_10183287_SNP [dm3] 3L_10190187_SNP [dm6]	A	C	2.253e^-4	0.893	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10923417	3L_10923417_SNP [dm3] 3L_10930317_SNP [dm6]	C	A	2.254e^-4	0.893	INTERGENIC
2R	6869189	2R_6869189_SNP [dm3] 2R_10981684_SNP [dm6]	T	C	2.257e^-4	0.893	UTR_3_PRIME luna
X	16081971	X_16081971_DEL [dm3] X_16187938_DEL [dm6]	TT	C	2.259e^-4	0.893	INTERGENIC
2R	6336323	2R_6336323_DEL [dm3] 2R_10448818_DEL [dm6]	TCTAGCAAAAGTAAATTGTA...	C	2.270e^-4	0.893	DOWNSTREAM Cyp49a1 INTRON Galphao
3R	24654604	3R_24654604_SNP [dm3] 3R_28828882_SNP [dm6]	C	T	2.272e^-4	0.893	INTRON WASp
3L	16923114	3L_16923114_SNP [dm3] 3L_16930014_SNP [dm6]	G	A	2.282e^-4	0.893	UTR_3_PRIME CG11905 INTRON CG11905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8963588	2R_8963588_SNP [dm3] 2R_13076083_SNP [dm6]	A	G	2.282e^-4	0.893	INTRON Drl-2
3L	12341102	3L_12341102_SNP [dm3] 3L_12348002_SNP [dm6]	A	T	2.299e^-4	0.893	UTR_5_PRIME CrzR
3L	3891100	3L_3891100_SNP [dm3] 3L_3891100_SNP [dm6]	C	A	2.301e^-4	0.893	DOWNSTREAM CR45422 INTERGENIC
2L	3391327	2L_3391327_SNP [dm3] 2L_3391327_SNP [dm6]	G	A	2.302e^-4	0.893	INTERGENIC
3R	25673655	3R_25673655_SNP [dm3] 3R_29847933_SNP [dm6]	G	T	2.309e^-4	0.893	INTRON Cad99C
2R	12004798	2R_12004798_SNP [dm3] 2R_16117293_SNP [dm6]	A	T	2.310e^-4	0.893	SYNONYMOUS_CODING Jhedup DOWNSTREAM Asph
2R	14244939	2R_14244939_SNP [dm3] 2R_18357434_SNP [dm6]	T	G	2.320e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	1696660	2R_1696660_SNP [dm3] 2R_5809155_SNP [dm6]	C	A	2.320e^-4	0.893	INTRON dpr12	TF binding site BDTNP1_TFBS_dl
2R	6825255	2R_6825255_SNP [dm3] 2R_10937750_SNP [dm6]	G	T	2.321e^-4	0.893	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6163180	3L_6163180_SNP [dm3] 3L_6170080_SNP [dm6]	C	G	2.324e^-4	0.893	INTRON CG10289	TF binding site mE1_TFBS_cad
2L	14624593	2L_14624593_DEL [dm3] 2L_14624593_DEL [dm6]	TAGG	T	2.324e^-4	0.893	INTRON osp
3L	13540598	3L_13540598_SNP [dm3] 3L_13547498_SNP [dm6]	G	A	2.328e^-4	0.893	INTRON bru-3	TF binding site mE1_TFBS_inv
X	10353960	X_10353960_INS [dm3] X_10459927_INS [dm6]	A	ACTTAACTTGTTGG...	2.333e^-4	0.893	UPSTREAM Or9a & 1 other INTERGENIC
X	6116736	X_6116736_INS [dm3] X_6222703_INS [dm6]	A	AA	2.342e^-4	0.893	UTR_3_PRIME Efr DOWNSTREAM sqh	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	24566305	3R_24566305_SNP [dm3] 3R_28740583_SNP [dm6]	G	A	2.346e^-4	0.893	SYNONYMOUS_CODING AstA-R2
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	2.349e^-4	0.893	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4203763	X_4203763_SNP [dm3] X_4309730_SNP [dm6]	A	G	2.353e^-4	0.893	INTERGENIC
3L	10387406	3L_10387406_SNP [dm3] 3L_10394306_SNP [dm6]	C	G	2.360e^-4	0.893	INTERGENIC
2R	7518711	2R_7518711_SNP [dm3] 2R_11631206_SNP [dm6]	T	G	2.360e^-4	0.893	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9440644	3L_9440644_SNP [dm3] 3L_9447544_SNP [dm6]	G	A	2.370e^-4	0.893	INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	10105039	3L_10105039_SNP [dm3] 3L_10111939_SNP [dm6]	A	T	2.371e^-4	0.893	INTRON dpr6
3R	17711736	3R_17711736_SNP [dm3] 3R_21886014_SNP [dm6]	T	C	2.371e^-4	0.893	SYNONYMOUS_CODING dnd UPSTREAM CG17819	TF binding site BDTNP1_TFBS_twi
2R	17111303	2R_17111303_SNP [dm3] 2R_21223798_SNP [dm6]	T	G	2.375e^-4	0.893	UTR_5_PRIME ASPP INTRON ASPP
3R	24575349	3R_24575349_SNP [dm3] 3R_28749627_SNP [dm6]	C	T	2.385e^-4	0.893	INTRON CG10000
3R	23332936	3R_23332936_SNP [dm3] 3R_27507214_SNP [dm6]	C	A	2.395e^-4	0.893	INTERGENIC
2R	5124293	2R_5124293_SNP [dm3] 2R_9236788_SNP [dm6]	C	T	2.396e^-4	0.893	UPSTREAM Cyp4p2 INTRON hig
2R	16194529	2R_16194529_SNP [dm3] 2R_20307024_SNP [dm6]	G	T	2.399e^-4	0.893	INTRON CG11200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11067205	3L_11067205_SNP [dm3] 3L_11074105_SNP [dm6]	C	T	2.403e^-4	0.893	UPSTREAM CG7839 DOWNSTREAM Mocs1 INTRON l_3_01239	TF binding site mE1_TFBS_sens
2R	6539256	2R_6539256_SNP [dm3] 2R_10651751_SNP [dm6]	G	A	2.418e^-4	0.893	INTERGENIC
3L	11224142	3L_11224142_SNP [dm3] 3L_11231042_SNP [dm6]	G	A	2.422e^-4	0.893	DOWNSTREAM CR45405 & 1 other INTERGENIC
2R	10831084	2R_10831084_SNP [dm3] 2R_14943579_SNP [dm6]	T	A	2.423e^-4	0.893	DOWNSTREAM aPKC INTRON CG10257
2L	3232166	2L_3232166_SNP [dm3] 2L_3232166_SNP [dm6]	A	G	2.425e^-4	0.893	INTERGENIC
2L	12797265	2L_12797265_SNP [dm3] 2L_12797265_SNP [dm6]	T	C	2.433e^-4	0.893	INTERGENIC
3L	9440451	3L_9440451_SNP [dm3] 3L_9447351_SNP [dm6]	C	T	2.436e^-4	0.893	DOWNSTREAM CG33926 INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
X	11185613	X_11185613_SNP [dm3] X_11291580_SNP [dm6]	G	C	2.438e^-4	0.893	INTRON CG44422
3R	14981873	3R_14981873_SNP [dm3] 3R_19156151_SNP [dm6]	G	A	2.442e^-4	0.893	SYNONYMOUS_CODING CG11779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18503662	3R_18503662_SNP [dm3] 3R_22677940_SNP [dm6]	C	G	2.451e^-4	0.893	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1527634	3R_1527634_SNP [dm3] 3R_5701912_SNP [dm6]	A	T	2.452e^-4	0.893	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_dl
3R	25598231	3R_25598231_SNP [dm3] 3R_29772509_SNP [dm6]	T	A	2.454e^-4	0.893	UPSTREAM kay INTRON kay	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3158038	2L_3158038_SNP [dm3] 2L_3158038_SNP [dm6]	C	A	2.468e^-4	0.893	INTRON Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	5385561	X_5385561_SNP [dm3] X_5491528_SNP [dm6]	A	G	2.469e^-4	0.893	INTRON SPR	TF binding site mE1_TFBS_chinmo
3R	24504367	3R_24504367_SNP [dm3] 3R_28678645_SNP [dm6]	G	C	2.471e^-4	0.893	INTRON CG9990
2R	5124102	2R_5124102_SNP [dm3] 2R_9236597_SNP [dm6]	A	G	2.479e^-4	0.893	UPSTREAM Cyp4p2 INTRON hig
2L	5579491	2L_5579491_SNP [dm3] 2L_5579491_SNP [dm6]	C	G	2.481e^-4	0.893	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5840847	2L_5840847_SNP [dm3] 2L_5840847_SNP [dm6]	C	A	2.484e^-4	0.893	INTRON TrissinR
3L	10525833	3L_10525833_SNP [dm3] 3L_10532733_SNP [dm6]	T	G	2.484e^-4	0.893	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16261985	3R_16261985_SNP [dm3] 3R_20436263_SNP [dm6]	G	A	2.486e^-4	0.893	INTRON Gfrl
3L	20723897	3L_20723897_SNP [dm3] 3L_20730797_SNP [dm6]	T	C	2.492e^-4	0.893	UTR_5_PRIME CG13252	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18121205	2L_18121205_SNP [dm3] 2L_18121205_SNP [dm6]	C	A	2.495e^-4	0.893	INTRON CG5758
X	14813543	X_14813543_SNP [dm3] X_14919510_SNP [dm6]	G	C	2.500e^-4	0.893	UTR_3_PRIME CG9503 UPSTREAM Eo INTRON Flo2	TF binding site mE1_TFBS_cad
3L	15953912	3L_15953912_SNP [dm3] 3L_15960812_SNP [dm6]	T	G	2.511e^-4	0.893	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
2L	17099963	2L_17099963_SNP [dm3] 2L_17099963_SNP [dm6]	T	C	2.511e^-4	0.893	INTERGENIC
2L	12575337	2L_12575337_SNP [dm3] 2L_12575337_SNP [dm6]	G	C	2.520e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	11944776	3R_11944776_SNP [dm3] 3R_16119054_SNP [dm6]	T	C	2.522e^-4	0.893	INTRON Sb
2R	12127471	2R_12127471_SNP [dm3] 2R_16239966_SNP [dm6]	G	A	2.525e^-4	0.893	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5429612	2L_5429612_SNP [dm3] 2L_5429612_SNP [dm6]	C	T	2.535e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7088798	X_7088798_SNP [dm3] X_7194765_SNP [dm6]	A	C	2.538e^-4	0.893	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14245350	2R_14245350_SNP [dm3] 2R_18357845_SNP [dm6]	T	C	2.541e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19183034	3L_19183034_SNP [dm3] 3L_19189934_SNP [dm6]	T	A	2.552e^-4	0.893	INTRON fz2	TF binding site BDTNP1_TFBS_da
3R	17555527	3R_17555527_SNP [dm3] 3R_21729805_SNP [dm6]	C	A	2.558e^-4	0.893	EXON CR43096
3L	1714372	3L_1714372_SNP [dm3] 3L_1714372_SNP [dm6]	G	A	2.567e^-4	0.893	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16551038	3L_16551038_SNP [dm3] 3L_16557938_SNP [dm6]	A	G	2.578e^-4	0.893	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
3R	16872023	3R_16872023_SNP [dm3] 3R_21046301_SNP [dm6]	T	C	2.580e^-4	0.893	UPSTREAM CG31189 INTRON CG31207	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18116580	3R_18116580_SNP [dm3] 3R_22290858_SNP [dm6]	A	G	2.587e^-4	0.893	INTRON SKIP
2L	10381472	2L_10381472_SNP [dm3] 2L_10381472_SNP [dm6]	A	G	2.588e^-4	0.893	SYNONYMOUS_CODING gny UPSTREAM CG5096
3L	3896606	3L_3896606_SNP [dm3] 3L_3896606_SNP [dm6]	C	T	2.597e^-4	0.893	UPSTREAM CG14977 & 1 other DOWNSTREAM Ccz1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10525290	3L_10525290_SNP [dm3] 3L_10532190_SNP [dm6]	G	C	2.605e^-4	0.893	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15346914	2R_15346914_SNP [dm3] 2R_19459409_SNP [dm6]	A	G	2.608e^-4	0.893	UTR_3_PRIME mei-W68 INTRON par-1
2R	14283759	2R_14283759_SNP [dm3] 2R_18396254_SNP [dm6]	C	T	2.615e^-4	0.893	DOWNSTREAM Idgf5 & 1 other INTERGENIC
3R	24014756	3R_24014756_SNP [dm3] 3R_28189034_SNP [dm6]	C	T	2.617e^-4	0.893	INTRON CG34354
X	20751759	X_20751759_SNP [dm3] X_20880732_SNP [dm6]	A	T	2.620e^-4	0.893	INTRON shakB
2L	18557976	2L_18557976_SNP [dm3] 2L_18557976_SNP [dm6]	A	T	2.630e^-4	0.893	INTRON Pde11
3R	12726458	3R_12726458_SNP [dm3] 3R_16900736_SNP [dm6]	T	C	2.630e^-4	0.893	UPSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2431610	3L_2431610_SNP [dm3] 3L_2431610_SNP [dm6]	C	A	2.635e^-4	0.893	INTRON CG45186
3R	25598423	3R_25598423_SNP [dm3] 3R_29772701_SNP [dm6]	A	C	2.638e^-4	0.893	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25727402	3R_25727402_SNP [dm3] 3R_29901680_SNP [dm6]	A	T	2.646e^-4	0.893	INTRON CG31038
2R	10806836	2R_10806836_SNP [dm3] 2R_14919331_SNP [dm6]	A	C	2.648e^-4	0.893	INTRON CG10249	TF binding site mE1_TFBS_cnc
2L	18125805	2L_18125805_SNP [dm3] 2L_18125805_SNP [dm6]	T	C	2.672e^-4	0.893	UPSTREAM CG31785 INTRON CG5758
3R	14981491	3R_14981491_SNP [dm3] 3R_19155769_SNP [dm6]	G	A	2.673e^-4	0.893	SYNONYMOUS_CODING CG11779	TF binding site mE1_TFBS_sens
2L	9210552	2L_9210552_SNP [dm3] 2L_9210552_SNP [dm6]	A	T	2.674e^-4	0.893	INTRON tai
2L	18181520	2L_18181520_SNP [dm3] 2L_18181520_SNP [dm6]	G	C	2.677e^-4	0.893	UTR_3_PRIME CG7180 INTRON CG42750
2L	5764366	2L_5764366_SNP [dm3] 2L_5764366_SNP [dm6]	T	A	2.680e^-4	0.893	INTRON obst-E	TF binding site mE1_TFBS_cad
3L	18295133	3L_18295133_SNP [dm3] 3L_18302033_SNP [dm6]	G	A	2.685e^-4	0.893	UPSTREAM CG13700 DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	3394393	2L_3394393_SNP [dm3] 2L_3394393_SNP [dm6]	G	C	2.690e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22406392	3R_22406392_SNP [dm3] 3R_26580670_SNP [dm6]	T	G	2.694e^-4	0.893	INTRON scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3084200	2L_3084200_SNP [dm3] 2L_3084200_SNP [dm6]	A	T	2.696e^-4	0.893	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	12440484	2L_12440484_SNP [dm3] 2L_12440484_SNP [dm6]	C	A	2.698e^-4	0.893	UTR_3_PRIME Elf DOWNSTREAM Oatp33Ea
3R	11224187	3R_11224187_SNP [dm3] 3R_15398465_SNP [dm6]	A	G	2.700e^-4	0.893	INTRON Rbp
2L	5119867	2L_5119867_SNP [dm3] 2L_5119867_SNP [dm6]	G	A	2.714e^-4	0.893	INTRON Msp300
2R	14261055	2R_14261055_INS [dm3] 2R_18373550_INS [dm6]	T	TT	2.718e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12010186	2R_12010186_SNP [dm3] 2R_16122681_SNP [dm6]	C	A	2.719e^-4	0.893	UTR_3_PRIME Jhe UPSTREAM CG30095
2R	5450947	2R_5450947_SNP [dm3] 2R_9563442_SNP [dm6]	G	A	2.720e^-4	0.893	INTRON CG1809 EXON CR45281	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2287990	2L_2287990_SNP [dm3] 2L_2287990_SNP [dm6]	A	G	2.724e^-4	0.893	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3L	14370975	3L_14370975_DEL [dm3] 3L_14377875_DEL [dm6]	AA	A	2.730e^-4	0.893	INTERGENIC
3L	2431623	3L_2431623_SNP [dm3] 3L_2431623_SNP [dm6]	C	T	2.730e^-4	0.893	INTRON CG45186
3R	24469243	3R_24469243_SNP [dm3] 3R_28643521_SNP [dm6]	C	A	2.730e^-4	0.893	UPSTREAM CG14062 INTERGENIC
X	565400	X_565400_SNP [dm3] X_671367_SNP [dm6]	G	C	2.737e^-4	0.893	INTERGENIC
2R	15906287	2R_15906287_SNP [dm3] 2R_20018782_SNP [dm6]	G	A	2.741e^-4	0.893	INTERGENIC
2R	15906383	2R_15906383_SNP [dm3] 2R_20018878_SNP [dm6]	T	A	2.741e^-4	0.893	INTERGENIC
X	5602497	X_5602497_SNP [dm3] X_5708464_SNP [dm6]	G	C	2.743e^-4	0.893	NON_SYNONYMOUS_CODING CG4096 UTR_3_PRIME CG4096 DOWNSTREAM CG33080	TF binding site mE1_TFBS_chinmo
3L	16922266	3L_16922266_SNP [dm3] 3L_16929166_SNP [dm6]	G	A	2.748e^-4	0.893	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7899124	3L_7899124_INS [dm3] 3L_7906024_INS [dm6]	A	AA	2.748e^-4	0.893	INTRON pbl
3R	23728308	3R_23728308_SNP [dm3] 3R_27902586_SNP [dm6]	T	A	2.757e^-4	0.893	INTRON CG34353
2L	10196177	2L_10196177_SNP [dm3] 2L_10196177_SNP [dm6]	T	A	2.757e^-4	0.893	INTRON Sur
3R	24967299	3R_24967299_SNP [dm3] 3R_29141577_SNP [dm6]	T	C	2.759e^-4	0.893	INTRON CG14516
X	10354756	X_10354756_SNP [dm3] X_10460723_SNP [dm6]	A	G	2.765e^-4	0.893	UPSTREAM Neb-cGP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11842236	2R_11842236_SNP [dm3] 2R_15954731_SNP [dm6]	G	A	2.773e^-4	0.893	SYNONYMOUS_CODING Strn-Mlck UPSTREAM CG8366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	13167821	2R_13167821_INS [dm3] 2R_17280316_INS [dm6]	A	ATAAA	2.775e^-4	0.893	INTRON mbl
X	4577918	X_4577918_SNP [dm3] X_4683885_SNP [dm6]	G	A	2.778e^-4	0.893	SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10320470	2L_10320470_SNP [dm3] 2L_10320470_SNP [dm6]	T	C	2.782e^-4	0.893	INTRON CG5381
2L	13771292	2L_13771292_SNP [dm3] 2L_13771292_SNP [dm6]	A	G	2.799e^-4	0.893	INTRON TM9SF4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11020430	2L_11020430_DEL [dm3] 2L_11020430_DEL [dm6]	AAT	A	2.811e^-4	0.893	INTRON Samuel
3L	2265904	3L_2265904_SNP [dm3] 3L_2265904_SNP [dm6]	G	A	2.815e^-4	0.893	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	11067705	2L_11067705_SNP [dm3] 2L_11067705_SNP [dm6]	T	A	2.835e^-4	0.893	UPSTREAM Samuel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	17111960	2R_17111960_SNP [dm3] 2R_21224455_SNP [dm6]	C	T	2.841e^-4	0.893	UPSTREAM ASPP INTRON ASPP
2R	21124750	2R_21124750_DEL [dm3] 2R_25237227_DEL [dm6]	TT	T	2.850e^-4	0.893	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10881265	3L_10881265_SNP [dm3] 3L_10888165_SNP [dm6]	A	G	2.860e^-4	0.893	INTERGENIC
3R	17556009	3R_17556009_SNP [dm3] 3R_21730287_SNP [dm6]	T	C	2.861e^-4	0.893	UPSTREAM CR43096 INTERGENIC
2L	11132904	2L_11132904_SNP [dm3] 2L_11132904_SNP [dm6]	C	T	2.862e^-4	0.893	SYNONYMOUS_CODING CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	676082	3L_676082_SNP [dm3] 3L_676082_SNP [dm6]	T	A	2.867e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5841146	2L_5841146_SNP [dm3] 2L_5841146_SNP [dm6]	T	A	2.869e^-4	0.893	INTRON TrissinR
X	12798682	X_12798682_SNP [dm3] X_12904649_SNP [dm6]	T	C	2.880e^-4	0.893	SYNONYMOUS_CODING CG4404	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11942852	2L_11942852_SNP [dm3] 2L_11942852_SNP [dm6]	G	T	2.890e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs
2L	9627348	2L_9627348_SNP [dm3] 2L_9627348_SNP [dm6]	C	A	2.896e^-4	0.893	INTERGENIC
2L	10231875	2L_10231875_SNP [dm3] 2L_10231875_SNP [dm6]	C	G	2.906e^-4	0.893	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11357719	3R_11357719_DEL [dm3] 3R_15531997_DEL [dm6]	GGCG	G	2.914e^-4	0.893	UPSTREAM CG31296 DOWNSTREAM CG18522 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16550224	3L_16550224_SNP [dm3] 3L_16557124_SNP [dm6]	T	C	2.934e^-4	0.893	SYNONYMOUS_CODING CG4229	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16997349	3R_16997349_SNP [dm3] 3R_21171627_SNP [dm6]	G	A	2.934e^-4	0.893	INTRON SNF4Agamma
3L	7586759	3L_7586759_SNP [dm3] 3L_7593659_SNP [dm6]	A	T	2.940e^-4	0.893	INTRON CG33275
X	8773032	X_8773032_SNP [dm3] X_8878999_SNP [dm6]	G	T	2.942e^-4	0.893	UPSTREAM Moe INTRON Moe
X	18982600	X_18982600_SNP [dm3] X_19088567_SNP [dm6]	G	T	2.944e^-4	0.893	INTERGENIC
3L	9056200	3L_9056200_SNP [dm3] 3L_9063100_SNP [dm6]	G	A	2.946e^-4	0.893	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1
2L	18128024	2L_18128024_SNP [dm3] 2L_18128024_SNP [dm6]	G	T	2.950e^-4	0.893	NON_SYNONYMOUS_CODING CG5758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14245492	2R_14245492_SNP [dm3] 2R_18357987_SNP [dm6]	A	C	2.957e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23509230	3R_23509230_DEL [dm3] 3R_27683508_DEL [dm6]	AA	A	2.959e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3919420	3L_3919420_SNP [dm3] 3L_3919420_SNP [dm6]	G	A	2.960e^-4	0.893	INTRON Eip63F-1
X	558161	X_558161_SNP [dm3] X_664128_SNP [dm6]	C	A	2.960e^-4	0.893	INTERGENIC
3R	14913615	3R_14913615_SNP [dm3] 3R_19087893_SNP [dm6]	G	A	2.968e^-4	0.893	UTR_5_PRIME cdi	TF binding site mE1_TFBS_chinmo
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	2.969e^-4	0.893	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3L	5965227	3L_5965227_SNP [dm3] 3L_5972127_SNP [dm6]	C	T	2.974e^-4	0.893	INTRON CG10479	TF binding site BDTNP1_TFBS_twi
X	14804793	X_14804793_SNP [dm3] X_14910760_SNP [dm6]	C	T	2.984e^-4	0.893	SYNONYMOUS_CODING CG14406 INTRON Flo2
3L	3675282	3L_3675282_SNP [dm3] 3L_3675282_SNP [dm6]	G	A	2.986e^-4	0.893	INTERGENIC
3L	10332211	3L_10332211_SNP [dm3] 3L_10339111_SNP [dm6]	G	A	2.990e^-4	0.893	INTERGENIC
X	7088993	X_7088993_SNP [dm3] X_7194960_SNP [dm6]	C	T	2.993e^-4	0.893	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7039132	2R_7039132_SNP [dm3] 2R_11151627_SNP [dm6]	T	A	2.994e^-4	0.893	INTRON CG13229
3L	10387344	3L_10387344_SNP [dm3] 3L_10394244_SNP [dm6]	A	C	2.996e^-4	0.893	INTERGENIC
2L	5840861	2L_5840861_SNP [dm3] 2L_5840861_SNP [dm6]	G	A	2.996e^-4	0.893	INTRON TrissinR
3R	23334260	3R_23334260_SNP [dm3] 3R_27508538_SNP [dm6]	A	C	3.010e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	3.012e^-4	0.893	SYNONYMOUS_CODING Plod
3R	13669631	3R_13669631_SNP [dm3] 3R_17843909_SNP [dm6]	C	T	3.020e^-4	0.893	INTRON tinc
3R	16916370	3R_16916370_SNP [dm3] 3R_21090648_SNP [dm6]	C	T	3.023e^-4	0.893	INTRON RhoGAP93B & 1 other
2L	14231909	2L_14231909_SNP [dm3] 2L_14231909_SNP [dm6]	T	A	3.039e^-4	0.893	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
3L	10387340	3L_10387340_SNP [dm3] 3L_10394240_SNP [dm6]	A	T	3.040e^-4	0.893	INTERGENIC
3L	10387444	3L_10387444_SNP [dm3] 3L_10394344_SNP [dm6]	C	A	3.040e^-4	0.893	INTERGENIC
3R	25691765	3R_25691765_SNP [dm3] 3R_29866043_SNP [dm6]	C	G	3.040e^-4	0.893	UPSTREAM Zip99C INTRON Zip99C
2L	15084637	2L_15084637_SNP [dm3] 2L_15084637_SNP [dm6]	A	G	3.040e^-4	0.893	INTRON CG15270
3R	26854444	3R_26854444_SNP [dm3] 3R_31028722_SNP [dm6]	C	T	3.049e^-4	0.893	INTERGENIC
3R	25815606	3R_25815606_SNP [dm3] 3R_29989884_SNP [dm6]	C	A	3.055e^-4	0.893	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8103659	2L_8103659_SNP [dm3] 2L_8103659_SNP [dm6]	A	T	3.055e^-4	0.893	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3L	13677905	3L_13677905_SNP [dm3] 3L_13684805_SNP [dm6]	G	A	3.067e^-4	0.893	INTRON bru-3
3L	10387319	3L_10387319_SNP [dm3] 3L_10394219_SNP [dm6]	T	A	3.079e^-4	0.893	INTERGENIC
3L	10387320	3L_10387320_SNP [dm3] 3L_10394220_SNP [dm6]	T	C	3.079e^-4	0.893	INTERGENIC
2L	10938587	2L_10938587_SNP [dm3] 2L_10938587_SNP [dm6]	C	T	3.080e^-4	0.893	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2R	14244895	2R_14244895_SNP [dm3] 2R_18357390_SNP [dm6]	A	T	3.081e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6821936	X_6821936_SNP [dm3] X_6927903_SNP [dm6]	T	C	3.082e^-4	0.893	INTRON CG14431	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24954216	3R_24954216_SNP [dm3] 3R_29128494_SNP [dm6]	T	C	3.083e^-4	0.893	DOWNSTREAM dgt6 & 1 other INTERGENIC
2L	12768964	2L_12768964_SNP [dm3] 2L_12768964_SNP [dm6]	T	G	3.093e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad
X	14862598	X_14862598_SNP [dm3] X_14968565_SNP [dm6]	T	G	3.100e^-4	0.893	INTRON eag
2L	18123286	2L_18123286_SNP [dm3] 2L_18123286_SNP [dm6]	C	T	3.108e^-4	0.893	DOWNSTREAM CG31785 INTRON CG5758
3L	6875275	3L_6875275_SNP [dm3] 3L_6882175_SNP [dm6]	G	A	3.109e^-4	0.893	INTERGENIC
2R	14244998	2R_14244998_SNP [dm3] 2R_18357493_SNP [dm6]	G	A	3.118e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15890818	2R_15890818_SNP [dm3] 2R_20003313_SNP [dm6]	C	T	3.119e^-4	0.893	DOWNSTREAM CG16898 INTERGENIC
3L	22359569	3L_22359569_SNP [dm3] 3L_22366469_SNP [dm6]	T	C	3.131e^-4	0.893	INTRON Ten-m
X	12032547	X_12032547_SNP [dm3] X_12138514_SNP [dm6]	T	A	3.140e^-4	0.893	INTRON Ten-a
3R	22232916	3R_22232916_SNP [dm3] 3R_26407194_SNP [dm6]	C	G	3.144e^-4	0.893	INTERGENIC
2L	14022910	2L_14022910_SNP [dm3] 2L_14022910_SNP [dm6]	T	A	3.160e^-4	0.893	UPSTREAM CR45352 DOWNSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	14808509	X_14808509_SNP [dm3] X_14914476_SNP [dm6]	G	A	3.168e^-4	0.893	UPSTREAM CG12398 INTRON Flo2
3L	5333207	3L_5333207_SNP [dm3] 3L_5340107_SNP [dm6]	A	G	3.170e^-4	0.893	INTERGENIC
2R	11473312	2R_11473312_SNP [dm3] 2R_15585807_SNP [dm6]	C	A	3.173e^-4	0.893	INTERGENIC
3R	4522292	3R_4522292_SNP [dm3] 3R_8696570_SNP [dm6]	G	C	3.175e^-4	0.893	INTRON hb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	19625824	2L_19625824_SNP [dm3] 2L_19625824_SNP [dm6]	T	G	3.189e^-4	0.893	INTRON Lar
2L	5818496	2L_5818496_SNP [dm3] 2L_5818496_SNP [dm6]	C	A	3.190e^-4	0.893	UPSTREAM CG31644 INTERGENIC
3R	19530948	3R_19530948_SNP [dm3] 3R_23705226_SNP [dm6]	T	A	3.198e^-4	0.893	DOWNSTREAM CG31413 INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19080048	2L_19080048_INS [dm3] 2L_19080048_INS [dm6]	C	CGGTTTC	3.200e^-4	0.893	UTR_3_PRIME Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18177987	2L_18177987_SNP [dm3] 2L_18177987_SNP [dm6]	G	A	3.204e^-4	0.893	INTRON CG42750
2L	5958458	2L_5958458_SNP [dm3] 2L_5958458_SNP [dm6]	A	T	3.213e^-4	0.893	NON_SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
X	4581219	X_4581219_DEL [dm3] X_4687186_DEL [dm6]	ATCTCA	A	3.223e^-4	0.893	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	10853449	3R_10853449_SNP [dm3] 3R_15027727_SNP [dm6]	C	T	3.233e^-4	0.893	INTERGENIC
3L	680659	3L_680659_INS [dm3] 3L_680659_INS [dm6]	T	TCTGTTTAGTTTAGTACACT...	3.238e^-4	0.893	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	15679635	3R_15679635_SNP [dm3] 3R_19853913_SNP [dm6]	G	A	3.241e^-4	0.893	UTR_3_PRIME CG4662 & 1 other DOWNSTREAM CG4662
3L	13264634	3L_13264634_SNP [dm3] 3L_13271534_SNP [dm6]	A	C	3.250e^-4	0.893	INTRON caps
3L	10387352	3L_10387352_INS [dm3] 3L_10394252_INS [dm6]	A	ATCTAT	3.254e^-4	0.893	INTERGENIC
2L	5750609	2L_5750609_SNP [dm3] 2L_5750609_SNP [dm6]	G	A	3.259e^-4	0.893	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12426850	2R_12426850_SNP [dm3] 2R_16539345_SNP [dm6]	A	C	3.262e^-4	0.893	INTERGENIC
3R	13468255	3R_13468255_SNP [dm3] 3R_17642533_SNP [dm6]	C	T	3.264e^-4	0.893	INTRON CG43175
X	15113759	X_15113759_SNP [dm3] X_15219726_SNP [dm6]	G	A	3.279e^-4	0.893	DOWNSTREAM CG43075 INTERGENIC
2L	9205262	2L_9205262_INS [dm3] 2L_9205262_INS [dm6]	A	AA	3.279e^-4	0.893	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17718668	2L_17718668_INS [dm3] 2L_17718668_INS [dm6]	A	ATGC	3.282e^-4	0.893	INTRON CadN
3L	4400187	3L_4400187_SNP [dm3] 3L_4400187_SNP [dm6]	T	A	3.284e^-4	0.893	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11754699	3R_11754699_SNP [dm3] 3R_15928977_SNP [dm6]	A	G	3.289e^-4	0.893	INTRON CG4221
3R	1520358	3R_1520358_SNP [dm3] 3R_5694636_SNP [dm6]	C	T	3.290e^-4	0.893	INTRON plx	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3486349	3L_3486349_SNP [dm3] 3L_3486349_SNP [dm6]	T	C	3.304e^-4	0.893	INTRON CG42324
2L	12163226	2L_12163226_INS [dm3] 2L_12163226_INS [dm6]	T	TATTAAGAAAT...	3.314e^-4	0.893	DOWNSTREAM CG31861 INTRON CG31760
3R	18116602	3R_18116602_DEL [dm3] 3R_22290880_DEL [dm6]	GTTAACAT	G	3.314e^-4	0.893	INTRON SKIP
X	15114184	X_15114184_SNP [dm3] X_15220151_SNP [dm6]	C	T	3.318e^-4	0.893	DOWNSTREAM CG43075 INTERGENIC
2L	18187908	2L_18187908_SNP [dm3] 2L_18187908_SNP [dm6]	C	T	3.323e^-4	0.893	INTRON CG42750
2R	10829658	2R_10829658_SNP [dm3] 2R_14942153_SNP [dm6]	G	T	3.338e^-4	0.893	UPSTREAM CG10257 INTERGENIC
2L	18118965	2L_18118965_SNP [dm3] 2L_18118965_SNP [dm6]	T	A	3.345e^-4	0.893	INTERGENIC
3R	24186730	3R_24186730_SNP [dm3] 3R_28361008_SNP [dm6]	G	T	3.352e^-4	0.893	INTERGENIC
3R	13727023	3R_13727023_SNP [dm3] 3R_17901301_SNP [dm6]	C	A	3.353e^-4	0.893	INTRON Rim
2R	11699973	2R_11699973_SNP [dm3] 2R_15812468_SNP [dm6]	G	T	3.363e^-4	0.893	INTRON tun & 1 other
X	4581073	X_4581073_INS [dm3] X_4687040_INS [dm6]	A	AAAA	3.363e^-4	0.893	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12004821	2R_12004821_SNP [dm3] 2R_16117316_SNP [dm6]	C	G	3.368e^-4	0.893	DOWNSTREAM Asph INTRON Jhedup
X	10920330	X_10920330_SNP [dm3] X_11026297_SNP [dm6]	A	C	3.370e^-4	0.893	INTRON CG42339
3L	15954112	3L_15954112_SNP [dm3] 3L_15961012_SNP [dm6]	G	A	3.378e^-4	0.893	SYNONYMOUS_CODING l_3_72Ab DOWNSTREAM CG17032	TF binding site mE1_TFBS_cad
X	4578962	X_4578962_SNP [dm3] X_4684929_SNP [dm6]	G	A	3.379e^-4	0.893	INTRON Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14244937	2R_14244937_SNP [dm3] 2R_18357432_SNP [dm6]	G	T	3.381e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10484562	2L_10484562_SNP [dm3] 2L_10484562_SNP [dm6]	C	T	3.389e^-4	0.893	SYNONYMOUS_CODING Grip75 DOWNSTREAM CG7456	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6825149	2R_6825149_INS [dm3] 2R_10937644_INS [dm6]	T	TGTAACATTT	3.401e^-4	0.893	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4127811	3L_4127811_SNP [dm3] 3L_4127811_SNP [dm6]	G	A	3.407e^-4	0.893	INTRON ens
2R	11288970	2R_11288970_SNP [dm3] 2R_15401465_SNP [dm6]	A	G	3.412e^-4	0.893	UTR_5_PRIME CG43729
X	14808778	X_14808778_DEL [dm3] X_14914745_DEL [dm6]	TAA	T	3.415e^-4	0.893	UPSTREAM CG12398 INTRON Flo2
3R	19189344	3R_19189344_SNP [dm3] 3R_23363622_SNP [dm6]	T	G	3.416e^-4	0.893	UPSTREAM CG4408 INTERGENIC
3L	528913	3L_528913_SNP [dm3] 3L_528913_SNP [dm6]	C	A	3.417e^-4	0.893	SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45117 INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7705255	3L_7705255_SNP [dm3] 3L_7712155_SNP [dm6]	A	C	3.418e^-4	0.893	INTRON CG32373 & 1 other
3L	9915587	3L_9915587_DEL [dm3] 3L_9922487_DEL [dm6]	AAGTAA	A	3.419e^-4	0.893	INTRON CG34356
3L	10104155	3L_10104155_SNP [dm3] 3L_10111055_SNP [dm6]	G	C	3.421e^-4	0.893	INTRON dpr6
2L	8305199	2L_8305199_SNP [dm3] 2L_8305199_SNP [dm6]	G	A	3.422e^-4	0.893	UTR_3_PRIME Scgalpha UPSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4577540	X_4577540_SNP [dm3] X_4683507_SNP [dm6]	T	C	3.428e^-4	0.893	SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5358766	2R_5358766_SNP [dm3] 2R_9471261_SNP [dm6]	C	G	3.431e^-4	0.893	INTRON Camta
3R	17780986	3R_17780986_SNP [dm3] 3R_21955264_SNP [dm6]	G	C	3.433e^-4	0.893	INTRON Eip93F
2L	13746893	2L_13746893_SNP [dm3] 2L_13746893_SNP [dm6]	C	G	3.450e^-4	0.893	UPSTREAM TM9SF4 & 1 other DOWNSTREAM mir-1002 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	4222073	3R_4222073_SNP [dm3] 3R_8396351_SNP [dm6]	T	C	3.452e^-4	0.893	INTRON CG45263
3L	11069707	3L_11069707_SNP [dm3] 3L_11076607_SNP [dm6]	T	G	3.470e^-4	0.893	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad
X	3130171	X_3130171_SNP [dm3] X_3236138_SNP [dm6]	A	T	3.476e^-4	0.893	UTR_3_PRIME CG14265 INTRON dnc
3L	1674596	3L_1674596_SNP [dm3] 3L_1674596_SNP [dm6]	A	C	3.484e^-4	0.893	UPSTREAM CG7991 INTERGENIC
X	7317996	X_7317996_DEL [dm3] X_7423963_DEL [dm6]	AT	A	3.489e^-4	0.893	DOWNSTREAM CG15036 INTERGENIC
3L	10027069	3L_10027069_SNP [dm3] 3L_10033969_SNP [dm6]	T	C	3.490e^-4	0.893	INTRON dpr6
3L	5992692	3L_5992692_SNP [dm3] 3L_5999592_SNP [dm6]	A	T	3.493e^-4	0.893	INTRON PVRAP
X	4576132	X_4576132_SNP [dm3] X_4682099_SNP [dm6]	T	A	3.494e^-4	0.893	SYNONYMOUS_CODING Pp2C1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15751320	2R_15751320_SNP [dm3] 2R_19863815_SNP [dm6]	G	T	3.499e^-4	0.893	UPSTREAM Obp56i INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4634765	X_4634765_DEL [dm3] X_4740732_DEL [dm6]	GAG	G	3.501e^-4	0.893	INTERGENIC
X	14808773	X_14808773_INS [dm3] X_14914740_INS [dm6]	G	TA	3.507e^-4	0.893	UPSTREAM CG12398 INTRON Flo2
3L	1706258	3L_1706258_SNP [dm3] 3L_1706258_SNP [dm6]	G	A	3.515e^-4	0.893	INTRON CG7991	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	22854728	3L_22854728_SNP [dm3] 3L_22861628_SNP [dm6]	G	T	3.525e^-4	0.893	DOWNSTREAM CG13239 INTERGENIC
2L	18097777	2L_18097777_SNP [dm3] 2L_18097777_SNP [dm6]	C	A	3.527e^-4	0.893	SYNONYMOUS_CODING CG5755
3L	10387299	3L_10387299_INS [dm3] 3L_10394199_INS [dm6]	A	AAAGGCGTGGC...	3.527e^-4	0.893	INTERGENIC
2L	13269439	2L_13269439_SNP [dm3] 2L_13269439_SNP [dm6]	G	T	3.529e^-4	0.893	INTRON CG44085
X	4575295	X_4575295_SNP [dm3] X_4681262_SNP [dm6]	G	T	3.538e^-4	0.893	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4913762	2L_4913762_SNP [dm3] 2L_4913762_SNP [dm6]	C	A	3.538e^-4	0.893	INTRON hoe1
2L	15278989	2L_15278989_SNP [dm3] 2L_15278989_SNP [dm6]	A	T	3.544e^-4	0.893	EXON CR43682
3L	6158837	3L_6158837_SNP [dm3] 3L_6165737_SNP [dm6]	T	C	3.559e^-4	0.893	UTR_3_PRIME CG10289
3L	1483991	3L_1483991_SNP [dm3] 3L_1483991_SNP [dm6]	C	A	3.563e^-4	0.893	INTRON stet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12800535	3R_12800535_SNP [dm3] 3R_16974813_SNP [dm6]	T	A	3.566e^-4	0.893	UPSTREAM VhaM9.7-d INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12797317	2L_12797317_SNP [dm3] 2L_12797317_SNP [dm6]	G	C	3.573e^-4	0.893	INTERGENIC
2L	12604986	2L_12604986_SNP [dm3] 2L_12604986_SNP [dm6]	T	A	3.575e^-4	0.893	INTRON nub	TF binding site BDTNP1_TFBS_da
3R	16425457	3R_16425457_SNP [dm3] 3R_20599735_SNP [dm6]	G	T	3.602e^-4	0.893	INTRON bon
X	18987640	X_18987640_SNP [dm3] X_19093607_SNP [dm6]	G	A	3.604e^-4	0.893	INTERGENIC
3R	10859954	3R_10859954_SNP [dm3] 3R_15034232_SNP [dm6]	T	G	3.605e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4581037	X_4581037_SNP [dm3] X_4687004_SNP [dm6]	C	A	3.608e^-4	0.893	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10096849	3L_10096849_SNP [dm3] 3L_10103749_SNP [dm6]	G	A	3.617e^-4	0.893	INTRON dpr6
3L	822163	3L_822163_SNP [dm3] 3L_822163_SNP [dm6]	T	C	3.623e^-4	0.893	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16512129	3L_16512129_SNP [dm3] 3L_16519029_SNP [dm6]	T	C	3.623e^-4	0.893	INTRON CG43373
2R	9454355	2R_9454355_SNP [dm3] 2R_13566850_SNP [dm6]	T	C	3.625e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12797198	2L_12797198_SNP [dm3] 2L_12797198_SNP [dm6]	A	T	3.625e^-4	0.893	INTERGENIC
3L	10096445	3L_10096445_SNP [dm3] 3L_10103345_SNP [dm6]	A	G	3.630e^-4	0.893	INTRON dpr6
X	16307760	X_16307760_SNP [dm3] X_16413727_SNP [dm6]	C	T	3.631e^-4	0.893	SYNONYMOUS_CODING CG4301
2L	7893506	2L_7893506_SNP [dm3] 2L_7893506_SNP [dm6]	G	A	3.632e^-4	0.893	UTR_3_PRIME Snoo
X	15113837	X_15113837_SNP [dm3] X_15219804_SNP [dm6]	G	A	3.636e^-4	0.893	DOWNSTREAM CG43075 INTERGENIC
3R	5139024	3R_5139024_SNP [dm3] 3R_9313302_SNP [dm6]	A	C	3.638e^-4	0.893	INTRON CG8861	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25228954	3R_25228954_SNP [dm3] 3R_29403232_SNP [dm6]	G	A	3.641e^-4	0.893	INTRON Ptp99A
2L	18193538	2L_18193538_SNP [dm3] 2L_18193538_SNP [dm6]	C	T	3.641e^-4	0.893	INTRON CG42750
3L	9317101	3L_9317101_INS [dm3] 3L_9324001_INS [dm6]	T	TTGG	3.643e^-4	0.893	INTERGENIC
3L	1709709	3L_1709709_SNP [dm3] 3L_1709709_SNP [dm6]	T	A	3.646e^-4	0.893	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	27410352	3R_27410352_SNP [dm3] 3R_31584630_SNP [dm6]	G	C	3.648e^-4	0.893	SPLICE_SITE_REGION rod INTRON rod	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16361133	2L_16361133_INS [dm3] 2L_16361133_INS [dm6]	T	TT	3.656e^-4	0.893	INTERGENIC
3R	23792944	3R_23792944_SNP [dm3] 3R_27967222_SNP [dm6]	A	G	3.660e^-4	0.893	DOWNSTREAM CG4849 INTRON betaTub97EF
2R	11023094	2R_11023094_SNP [dm3] 2R_15135589_SNP [dm6]	G	A	3.665e^-4	0.893	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7389484	2R_7389484_SNP [dm3] 2R_11501979_SNP [dm6]	T	C	3.669e^-4	0.893	INTRON inv
3R	13668971	3R_13668971_SNP [dm3] 3R_17843249_SNP [dm6]	A	C	3.672e^-4	0.893	INTRON tinc
X	21237425	X_21237425_SNP [dm3] X_21366398_SNP [dm6]	T	C	3.673e^-4	0.893	INTRON waw & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14244948	2R_14244948_SNP [dm3] 2R_18357443_SNP [dm6]	C	T	3.675e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10994425	3R_10994425_SNP [dm3] 3R_15168703_SNP [dm6]	C	G	3.677e^-4	0.893	INTRON Gyc88E
X	1560105	X_1560105_SNP [dm3] X_1666072_SNP [dm6]	G	C	3.677e^-4	0.893	SYNONYMOUS_CODING dor INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17568765	2R_17568765_SNP [dm3] 2R_21681260_SNP [dm6]	A	T	3.683e^-4	0.893	INTRON CG30263	TF binding site mE1_TFBS_chinmo
3L	12342321	3L_12342321_SNP [dm3] 3L_12349221_SNP [dm6]	T	C	3.685e^-4	0.893	INTRON CrzR
3R	26760773	3R_26760773_SNP [dm3] 3R_30935051_SNP [dm6]	C	T	3.688e^-4	0.893	DOWNSTREAM CG15549 INTERGENIC
2R	16066999	2R_16066999_SNP [dm3] 2R_20179494_SNP [dm6]	T	C	3.711e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19702967	3R_19702967_SNP [dm3] 3R_23877245_SNP [dm6]	C	A	3.711e^-4	0.893	INTRON Pli
2L	18586093	2L_18586093_SNP [dm3] 2L_18586093_SNP [dm6]	G	A	3.744e^-4	0.893	INTRON Pde11
2L	14356552	2L_14356552_DEL [dm3] 2L_14356552_DEL [dm6]	AGCAA	A	3.747e^-4	0.893	UPSTREAM Rab14 INTRON Rab14 EXON CR44851
X	14808006	X_14808006_SNP [dm3] X_14913973_SNP [dm6]	G	A	3.749e^-4	0.893	UPSTREAM CG12398 INTRON Flo2
3R	26784268	3R_26784268_SNP [dm3] 3R_30958546_SNP [dm6]	C	T	3.751e^-4	0.893	INTERGENIC
X	7317993	X_7317993_SNP [dm3] X_7423960_SNP [dm6]	G	A	3.755e^-4	0.893	DOWNSTREAM CG15036 INTERGENIC
3L	22881517	3L_22881517_SNP [dm3] 3L_22888417_SNP [dm6]	G	A	3.775e^-4	0.893	UPSTREAM slif INTRON slif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15244034	3L_15244034_SNP [dm3] 3L_15250934_SNP [dm6]	T	C	3.780e^-4	0.893	INTERGENIC
2L	18090023	2L_18090023_SNP [dm3] 2L_18090023_SNP [dm6]	T	C	3.781e^-4	0.893	DOWNSTREAM CG15153 INTERGENIC
2R	8531231	2R_8531231_SNP [dm3] 2R_12643726_SNP [dm6]	C	A	3.782e^-4	0.893	INTRON CG8785
X	16082810	X_16082810_SNP [dm3] X_16188777_SNP [dm6]	G	A	3.783e^-4	0.893	INTERGENIC
3L	15674761	3L_15674761_SNP [dm3] 3L_15681661_SNP [dm6]	C	A	3.790e^-4	0.893	UTR_3_PRIME CG7579 DOWNSTREAM CG7304
2L	12275591	2L_12275591_SNP [dm3] 2L_12275591_SNP [dm6]	C	T	3.791e^-4	0.893	INTRON aret
2L	14624608	2L_14624608_DEL [dm3] 2L_14624608_DEL [dm6]	AACACAGAGAGGGAGCTAAA...	A	3.792e^-4	0.893	INTRON osp
3L	16480068	3L_16480068_SNP [dm3] 3L_16486968_SNP [dm6]	G	C	3.801e^-4	0.893	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	4016943	3L_4016943_SNP [dm3] 3L_4016943_SNP [dm6]	C	T	3.805e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10702387	3R_10702387_SNP [dm3] 3R_14876665_SNP [dm6]	T	C	3.806e^-4	0.893	INTERGENIC
3L	13397778	3L_13397778_SNP [dm3] 3L_13404678_SNP [dm6]	A	C	3.810e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad
2R	21142576	2R_21142576_SNP [dm3] 2R_25255053_SNP [dm6]	G	C	3.818e^-4	0.893	UTR_5_PRIME CG9380 DOWNSTREAM CG30428
3L	9389692	3L_9389692_SNP [dm3] 3L_9396592_SNP [dm6]	T	C	3.823e^-4	0.893	INTRON CG4080
3R	10702369	3R_10702369_SNP [dm3] 3R_14876647_SNP [dm6]	T	C	3.825e^-4	0.893	INTERGENIC
3R	3047308	3R_3047308_SNP [dm3] 3R_7221586_SNP [dm6]	C	G	3.829e^-4	0.893	INTERGENIC
X	15725467	X_15725467_SNP [dm3] X_15831434_SNP [dm6]	A	G	3.830e^-4	0.893	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1071187	3L_1071187_SNP [dm3] 3L_1071187_SNP [dm6]	A	G	3.836e^-4	0.893	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	3970429	X_3970429_SNP [dm3] X_4076396_SNP [dm6]	A	G	3.843e^-4	0.893	UTR_5_PRIME CG43689
2R	3586375	2R_3586375_SNP [dm3] 2R_7698870_SNP [dm6]	C	T	3.849e^-4	0.893	START_GAINED CG1399 UTR_5_PRIME CG1399 UPSTREAM CG30493 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26822667	3R_26822667_SNP [dm3] 3R_30996945_SNP [dm6]	G	A	3.857e^-4	0.893	INTRON 5-HT7
2L	12850485	2L_12850485_SNP [dm3] 2L_12850485_SNP [dm6]	A	C	3.857e^-4	0.893	INTERGENIC
X	18987648	X_18987648_SNP [dm3] X_19093615_SNP [dm6]	C	A	3.859e^-4	0.893	INTERGENIC
2L	6867438	2L_6867438_SNP [dm3] 2L_6867438_SNP [dm6]	A	G	3.859e^-4	0.893	INTRON Nha1
3L	16734759	3L_16734759_SNP [dm3] 3L_16741659_SNP [dm6]	G	C	3.863e^-4	0.893	INTERGENIC
2R	7678008	2R_7678008_SNP [dm3] 2R_11790503_SNP [dm6]	A	C	3.867e^-4	0.893	UTR_5_PRIME ths INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	743966	3R_743966_SNP [dm3] 3R_4918244_SNP [dm6]	C	G	3.886e^-4	0.893	INTRON Cdep
2L	12575822	2L_12575822_DEL [dm3] 2L_12575822_DEL [dm6]	ACGA	A	3.886e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	18542266	3L_18542266_SNP [dm3] 3L_18549166_SNP [dm6]	C	T	3.888e^-4	0.893	INTERGENIC
3L	10115151	3L_10115151_SNP [dm3] 3L_10122051_SNP [dm6]	G	A	3.891e^-4	0.893	INTRON dpr6
3R	14724954	3R_14724954_SNP [dm3] 3R_18899232_SNP [dm6]	T	A	3.896e^-4	0.893	SYNONYMOUS_CODING CG14297 UPSTREAM Rh2	regulatory region REDfly_CRMs
3L	20716972	3L_20716972_SNP [dm3] 3L_20723872_SNP [dm6]	G	A	3.906e^-4	0.893	INTERGENIC
3R	17219583	3R_17219583_SNP [dm3] 3R_21393861_SNP [dm6]	G	C	3.906e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11299568	3L_11299568_SNP [dm3] 3L_11306468_SNP [dm6]	G	A	3.917e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9810480	3L_9810480_SNP [dm3] 3L_9817380_SNP [dm6]	A	C	3.922e^-4	0.893	INTRON CG43897
3R	23784075	3R_23784075_SNP [dm3] 3R_27958353_SNP [dm6]	T	C	3.922e^-4	0.893	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23784084	3R_23784084_SNP [dm3] 3R_27958362_SNP [dm6]	A	T	3.922e^-4	0.893	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23331858	3R_23331858_SNP [dm3] 3R_27506136_SNP [dm6]	C	G	3.929e^-4	0.893	INTERGENIC
3R	20010986	3R_20010986_SNP [dm3] 3R_24185264_SNP [dm6]	T	A	3.933e^-4	0.893	INTERGENIC
3L	11069704	3L_11069704_SNP [dm3] 3L_11076604_SNP [dm6]	C	A	3.942e^-4	0.893	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad
2R	15564277	2R_15564277_SNP [dm3] 2R_19676772_SNP [dm6]	T	A	3.947e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3977404	X_3977404_SNP [dm3] X_4083371_SNP [dm6]	A	G	3.947e^-4	0.893	SYNONYMOUS_CODING CG43689	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1948080	3R_1948080_SNP [dm3] 3R_6122358_SNP [dm6]	A	G	3.950e^-4	0.893	UPSTREAM Vha14-2 INTERGENIC
X	10891189	X_10891189_SNP [dm3] X_10997156_SNP [dm6]	G	T	3.952e^-4	0.893	INTRON CG42339
3L	9651390	3L_9651390_SNP [dm3] 3L_9658290_SNP [dm6]	G	C	3.955e^-4	0.893	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3R	22695829	3R_22695829_SNP [dm3] 3R_26870107_SNP [dm6]	A	G	3.957e^-4	0.893	SYNONYMOUS_CODING BM-40-SPARC DOWNSTREAM His2Av	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10801770	3R_10801770_SNP [dm3] 3R_14976048_SNP [dm6]	C	T	3.958e^-4	0.893	INTERGENIC
2R	19441113	2R_19441113_SNP [dm3] 2R_23553590_SNP [dm6]	A	G	3.976e^-4	0.893	DOWNSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	18982625	X_18982625_SNP [dm3] X_19088592_SNP [dm6]	C	G	3.977e^-4	0.893	INTERGENIC
3L	12341114	3L_12341114_SNP [dm3] 3L_12348014_SNP [dm6]	G	A	3.979e^-4	0.893	UTR_5_PRIME CrzR
2L	2065826	2L_2065826_SNP [dm3] 2L_2065826_SNP [dm6]	G	T	3.984e^-4	0.893	INTRON dpr3
3R	17555476	3R_17555476_SNP [dm3] 3R_21729754_SNP [dm6]	A	T	3.984e^-4	0.893	EXON CR43096
3L	677735	3L_677735_SNP [dm3] 3L_677735_SNP [dm6]	T	C	3.986e^-4	0.893	DOWNSTREAM CG17129 INTERGENIC
3L	14771164	3L_14771164_SNP [dm3] 3L_14778064_SNP [dm6]	T	A	3.997e^-4	0.893	INTRON bmm
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	4.000e^-4	0.893	INTRON CG44153 & 1 other
2R	21122342	2R_21122342_DEL [dm3] 2R_25234819_DEL [dm6]	TCCATTCTCTGTTCTTTGTT...	T	4.001e^-4	0.893	INTRON CG9380
2R	14245767	2R_14245767_SNP [dm3] 2R_18358262_SNP [dm6]	T	A	4.006e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14427856	3R_14427856_SNP [dm3] 3R_18602134_SNP [dm6]	C	G	4.007e^-4	0.893	INTRON qin & 1 other
3L	9773569	3L_9773569_SNP [dm3] 3L_9780469_SNP [dm6]	C	A	4.009e^-4	0.893	INTRON CG8177
3R	10859939	3R_10859939_SNP [dm3] 3R_15034217_SNP [dm6]	A	T	4.013e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9933877	3L_9933877_SNP [dm3] 3L_9940777_SNP [dm6]	A	T	4.016e^-4	0.893	INTRON CG34356
3L	1088024	3L_1088024_SNP [dm3] 3L_1088024_SNP [dm6]	C	T	4.020e^-4	0.893	INTRON bab1
3R	24492023	3R_24492023_INS [dm3] 3R_28666301_INS [dm6]	A	AG	4.024e^-4	0.893	INTERGENIC
2R	5987066	2R_5987066_SNP [dm3] 2R_10099561_SNP [dm6]	G	A	4.026e^-4	0.893	UTR_5_PRIME RpLP0-like UPSTREAM 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	3232094	2L_3232094_DEL [dm3] 2L_3232094_DEL [dm6]	GCTGGAGGTCCTGTAATTAA...	G	4.031e^-4	0.893	INTERGENIC
2L	7442931	2L_7442931_SNP [dm3] 2L_7442931_SNP [dm6]	A	G	4.031e^-4	0.893	UPSTREAM CG5973 INTRON CG5973
3L	6751453	3L_6751453_SNP [dm3] 3L_6758353_SNP [dm6]	T	A	4.039e^-4	0.893	INTRON CG32392	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9210557	2L_9210557_INS [dm3] 2L_9210557_INS [dm6]	A	ATATAGGTATCTA...	4.041e^-4	0.893	INTRON tai
3R	18378436	3R_18378436_SNP [dm3] 3R_22552714_SNP [dm6]	A	T	4.050e^-4	0.893	UPSTREAM bond & 1 other INTRON bond
3R	23363546	3R_23363546_SNP [dm3] 3R_27537824_SNP [dm6]	A	G	4.051e^-4	0.893	UPSTREAM CR44288 EXON CR44289
3L	10387446	3L_10387446_SNP [dm3] 3L_10394346_SNP [dm6]	G	C	4.052e^-4	0.893	INTERGENIC
2L	13269447	2L_13269447_SNP [dm3] 2L_13269447_SNP [dm6]	C	A	4.058e^-4	0.893	INTRON CG44085
3L	20853569	3L_20853569_SNP [dm3] 3L_20860469_SNP [dm6]	T	A	4.063e^-4	0.893	INTRON CG32432
3L	11299517	3L_11299517_SNP [dm3] 3L_11306417_SNP [dm6]	A	T	4.066e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10101004	3L_10101004_SNP [dm3] 3L_10107904_SNP [dm6]	T	A	4.078e^-4	0.893	INTRON dpr6
2R	14244951	2R_14244951_SNP [dm3] 2R_18357446_SNP [dm6]	G	A	4.086e^-4	0.893	UPSTREAM sbb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11196972	3L_11196972_SNP [dm3] 3L_11203872_SNP [dm6]	G	A	4.099e^-4	0.893	INTRON Plod
X	7317999	X_7317999_SNP [dm3] X_7423966_SNP [dm6]	C	T	4.117e^-4	0.893	DOWNSTREAM CG15036 INTERGENIC
3L	10387448	3L_10387448_SNP [dm3] 3L_10394348_SNP [dm6]	G	A	4.118e^-4	0.893	INTERGENIC
3R	3069207	3R_3069207_SNP [dm3] 3R_7243485_SNP [dm6]	G	A	4.121e^-4	0.893	NON_SYNONYMOUS_CODING CG14607 DOWNSTREAM CG1234
2L	5958906	2L_5958906_SNP [dm3] 2L_5958906_SNP [dm6]	C	T	4.122e^-4	0.893	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad
3L	10032317	3L_10032317_SNP [dm3] 3L_10039217_SNP [dm6]	A	G	4.126e^-4	0.893	INTRON dpr6
2R	10811750	2R_10811750_INS [dm3] 2R_14924245_INS [dm6]	T	TGTT	4.127e^-4	0.893	INTRON CG10249
2L	14616033	2L_14616033_SNP [dm3] 2L_14616033_SNP [dm6]	T	A	4.133e^-4	0.893	UPSTREAM Adhr & 1 other INTRON osp & 2 others	TF binding site mE1_TFBS_cad
3L	10032711	3L_10032711_SNP [dm3] 3L_10039611_SNP [dm6]	G	C	4.134e^-4	0.893	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2L	4500873	2L_4500873_SNP [dm3] 2L_4500873_SNP [dm6]	T	C	4.139e^-4	0.893	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24243962	3R_24243962_SNP [dm3] 3R_28418240_SNP [dm6]	T	G	4.142e^-4	0.893	UTR_5_PRIME beat-VI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14793076	2L_14793076_SNP [dm3] 2L_14793076_SNP [dm6]	T	C	4.151e^-4	0.893	INTERGENIC
3L	10245843	3L_10245843_SNP [dm3] 3L_10252743_SNP [dm6]	T	A	4.153e^-4	0.893	INTERGENIC
3L	10100971	3L_10100971_SNP [dm3] 3L_10107871_SNP [dm6]	T	A	4.165e^-4	0.893	INTRON dpr6
3L	2609666	3L_2609666_SNP [dm3] 3L_2609666_SNP [dm6]	T	C	4.168e^-4	0.893	DOWNSTREAM Pxn INTRON Pxn	TF binding site mE1_TFBS_sbb
2R	16823834	2R_16823834_SNP [dm3] 2R_20936329_SNP [dm6]	C	A	4.168e^-4	0.893	NON_SYNONYMOUS_CODING Rx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5743720	2L_5743720_SNP [dm3] 2L_5743720_SNP [dm6]	G	T	4.170e^-4	0.893	INTRON CG11030
2L	12575791	2L_12575791_SNP [dm3] 2L_12575791_SNP [dm6]	A	T	4.173e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	14051826	3R_14051826_SNP [dm3] 3R_18226104_SNP [dm6]	C	G	4.173e^-4	0.893	UPSTREAM Mdh2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	14575289	2R_14575289_SNP [dm3] 2R_18687784_SNP [dm6]	G	A	4.180e^-4	0.893	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10804007	2R_10804007_INS [dm3] 2R_14916502_INS [dm6]	T	GATAATATA	4.186e^-4	0.893	INTRON CG10249
2R	12351064	2R_12351064_SNP [dm3] 2R_16463559_SNP [dm6]	A	G	4.186e^-4	0.893	INTERGENIC
3L	16881379	3L_16881379_SNP [dm3] 3L_16888279_SNP [dm6]	T	C	4.187e^-4	0.893	INTRON Lmpt
3R	23811181	3R_23811181_SNP [dm3] 3R_27985459_SNP [dm6]	A	C	4.189e^-4	0.893	INTRON betaTub97EF
3R	16763767	3R_16763767_SNP [dm3] 3R_20938045_SNP [dm6]	C	G	4.192e^-4	0.893	INTRON CG31191
2L	18270778	2L_18270778_SNP [dm3] 2L_18270778_SNP [dm6]	A	T	4.194e^-4	0.893	INTRON CG42750
3L	19014281	3L_19014281_SNP [dm3] 3L_19021181_SNP [dm6]	C	T	4.197e^-4	0.893	INTRON nkd
3L	10030754	3L_10030754_SNP [dm3] 3L_10037654_SNP [dm6]	C	T	4.201e^-4	0.893	INTRON dpr6
3L	7944083	3L_7944083_SNP [dm3] 3L_7950983_SNP [dm6]	G	C	4.202e^-4	0.893	UTR_3_PRIME exex
2L	12553543	2L_12553543_SNP [dm3] 2L_12553543_SNP [dm6]	T	C	4.207e^-4	0.893	INTERGENIC
3L	7705115	3L_7705115_SNP [dm3] 3L_7712015_SNP [dm6]	G	C	4.210e^-4	0.893	INTRON CG32373 & 1 other
2L	10938554	2L_10938554_SNP [dm3] 2L_10938554_SNP [dm6]	T	C	4.220e^-4	0.893	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2R	4161594	2R_4161594_SNP [dm3] 2R_8274089_SNP [dm6]	A	C	4.224e^-4	0.893	INTERGENIC
3L	16734797	3L_16734797_SNP [dm3] 3L_16741697_SNP [dm6]	C	T	4.227e^-4	0.893	INTERGENIC
2L	15823971	2L_15823971_SNP [dm3] 2L_15823971_SNP [dm6]	T	A	4.230e^-4	0.893	INTERGENIC
X	12345260	X_12345260_SNP [dm3] X_12451227_SNP [dm6]	A	T	4.231e^-4	0.893	INTRON Pkcdelta
2R	10803992	2R_10803992_SNP [dm3] 2R_14916487_SNP [dm6]	A	T	4.245e^-4	0.893	INTRON CG10249
3L	10387393	3L_10387393_INS [dm3] 3L_10394293_INS [dm6]	T	TG	4.248e^-4	0.893	INTERGENIC
2L	16274065	2L_16274065_SNP [dm3] 2L_16274065_SNP [dm6]	T	C	4.251e^-4	0.893	INTRON crp	TF binding site BDTNP1_TFBS_dl
3L	20716656	3L_20716656_SNP [dm3] 3L_20723556_SNP [dm6]	T	A	4.253e^-4	0.893	INTERGENIC
X	4571609	X_4571609_DEL [dm3] X_4677576_DEL [dm6]	GCCGTTTCCCGGCCTG...	G	4.263e^-4	0.893	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10285368	2L_10285368_SNP [dm3] 2L_10285368_SNP [dm6]	G	A	4.264e^-4	0.893	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8304728	2L_8304728_SNP [dm3] 2L_8304728_SNP [dm6]	G	A	4.265e^-4	0.893	SYNONYMOUS_CODING Scgalpha UPSTREAM CG7840 INTRON Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9389699	3L_9389699_SNP [dm3] 3L_9396599_SNP [dm6]	G	C	4.270e^-4	0.893	INTRON CG4080
2R	4501263	2R_4501263_SNP [dm3] 2R_8613758_SNP [dm6]	C	T	4.272e^-4	0.893	NON_SYNONYMOUS_CODING CG8642 UPSTREAM Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26784179	3R_26784179_SNP [dm3] 3R_30958457_SNP [dm6]	G	A	4.291e^-4	0.893	INTERGENIC
X	15113822	X_15113822_SNP [dm3] X_15219789_SNP [dm6]	C	T	4.297e^-4	0.893	DOWNSTREAM CG43075 INTERGENIC
2R	5124078	2R_5124078_SNP [dm3] 2R_9236573_SNP [dm6]	T	A	4.301e^-4	0.893	UPSTREAM Cyp4p2 INTRON hig
3R	16763675	3R_16763675_SNP [dm3] 3R_20937953_SNP [dm6]	C	G	4.302e^-4	0.893	INTRON CG31191
2L	14759560	2L_14759560_SNP [dm3] 2L_14759560_SNP [dm6]	C	T	4.317e^-4	0.893	INTERGENIC
X	14813316	X_14813316_SNP [dm3] X_14919283_SNP [dm6]	C	T	4.321e^-4	0.893	UTR_3_PRIME CG9503 UPSTREAM Eo INTRON Flo2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	4.337e^-4	0.893	INTRON AstC-R1
3R	24195725	3R_24195725_INS [dm3] 3R_28370003_INS [dm6]	T	TGTTA	4.338e^-4	0.893	INTERGENIC
2L	15734920	2L_15734920_SNP [dm3] 2L_15734920_SNP [dm6]	T	G	4.364e^-4	0.893	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	19469257	2L_19469257_SNP [dm3] 2L_19469257_SNP [dm6]	C	A	4.365e^-4	0.893	DOWNSTREAM CR45723 EXON CR45722
3L	9056403	3L_9056403_SNP [dm3] 3L_9063303_SNP [dm6]	G	C	4.366e^-4	0.893	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	10929743	2L_10929743_SNP [dm3] 2L_10929743_SNP [dm6]	T	G	4.366e^-4	0.893	INTRON dpr2
2L	1913748	2L_1913748_SNP [dm3] 2L_1913748_SNP [dm6]	G	A	4.366e^-4	0.893	INTRON CG7337
2L	13924254	2L_13924254_SNP [dm3] 2L_13924254_SNP [dm6]	A	T	4.376e^-4	0.893	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl
3L	4409216	3L_4409216_SNP [dm3] 3L_4409216_SNP [dm6]	C	A	4.391e^-4	0.893	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	24575453	3R_24575453_SNP [dm3] 3R_28749731_SNP [dm6]	A	T	4.393e^-4	0.893	INTRON CG10000
3R	25804470	3R_25804470_SNP [dm3] 3R_29978748_SNP [dm6]	A	G	4.396e^-4	0.893	INTERGENIC
3L	6756005	3L_6756005_SNP [dm3] 3L_6762905_SNP [dm6]	C	T	4.402e^-4	0.893	INTRON CG32392
3L	9221119	3L_9221119_SNP [dm3] 3L_9228019_SNP [dm6]	G	A	4.406e^-4	0.893	INTERGENIC
3L	496847	3L_496847_SNP [dm3] 3L_496847_SNP [dm6]	T	C	4.407e^-4	0.893	INTRON klar
3R	23315516	3R_23315516_SNP [dm3] 3R_27489794_SNP [dm6]	G	A	4.410e^-4	0.893	UTR_3_PRIME Gr98a
2L	18131365	2L_18131365_SNP [dm3] 2L_18131365_SNP [dm6]	C	T	4.431e^-4	0.893	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA
X	15113852	X_15113852_SNP [dm3] X_15219819_SNP [dm6]	T	G	4.439e^-4	0.893	DOWNSTREAM CG43075 INTERGENIC
2R	10948661	2R_10948661_SNP [dm3] 2R_15061156_SNP [dm6]	T	C	4.448e^-4	0.893	INTERGENIC
2L	3973292	2L_3973292_SNP [dm3] 2L_3973292_SNP [dm6]	G	A	4.452e^-4	0.893	INTRON fred
2L	15335350	2L_15335350_SNP [dm3] 2L_15335350_SNP [dm6]	C	T	4.455e^-4	0.893	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da
3L	13913947	3L_13913947_SNP [dm3] 3L_13920847_SNP [dm6]	T	A	4.456e^-4	0.893	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12575881	2L_12575881_SNP [dm3] 2L_12575881_SNP [dm6]	A	G	4.469e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	16394607	2R_16394607_SNP [dm3] 2R_20507102_SNP [dm6]	T	A	4.481e^-4	0.893	UPSTREAM CR44644 DOWNSTREAM CR44645 INTERGENIC
2L	5579489	2L_5579489_SNP [dm3] 2L_5579489_SNP [dm6]	T	C	4.482e^-4	0.893	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9672807	2R_9672807_INS [dm3] 2R_13785302_INS [dm6]	A	AA	4.487e^-4	0.893	DOWNSTREAM CR43810 INTRON Cpr50Ca
X	11903588	X_11903588_SNP [dm3] X_12009555_SNP [dm6]	T	C	4.488e^-4	0.893	SYNONYMOUS_CODING CG1806 DOWNSTREAM CG1492
2L	2780343	2L_2780343_SNP [dm3] 2L_2780343_SNP [dm6]	G	T	4.492e^-4	0.893	UTR_3_PRIME Syt1 DOWNSTREAM Syt1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23270962	3R_23270962_SNP [dm3] 3R_27445240_SNP [dm6]	A	T	4.492e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17431583	2R_17431583_SNP [dm3] 2R_21544078_SNP [dm6]	C	T	4.495e^-4	0.893	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	9820071	2L_9820071_SNP [dm3] 2L_9820071_SNP [dm6]	C	T	4.497e^-4	0.893	INTRON nAChRalpha6
X	3468256	X_3468256_DEL [dm3] X_3574223_DEL [dm6]	TA	T	4.506e^-4	0.893	UPSTREAM AstA-R1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1455658	3L_1455658_SNP [dm3] 3L_1455658_SNP [dm6]	A	T	4.512e^-4	0.893	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3R	922997	3R_922997_SNP [dm3] 3R_5097275_SNP [dm6]	A	G	4.513e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24492400	3R_24492400_SNP [dm3] 3R_28666678_SNP [dm6]	C	A	4.515e^-4	0.893	INTERGENIC
3R	10859894	3R_10859894_SNP [dm3] 3R_15034172_SNP [dm6]	C	G	4.521e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8445408	2R_8445408_SNP [dm3] 2R_12557903_SNP [dm6]	C	A	4.527e^-4	0.893	INTRON fra	TF binding site mE1_TFBS_cad
2L	5884979	2L_5884979_SNP [dm3] 2L_5884979_SNP [dm6]	T	G	4.532e^-4	0.893	START_GAINED CG43185 UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac DOWNSTREAM CG44574
X	14861274	X_14861274_SNP [dm3] X_14967241_SNP [dm6]	G	C	4.540e^-4	0.893	INTRON eag
2L	11789859	2L_11789859_SNP [dm3] 2L_11789859_SNP [dm6]	T	C	4.545e^-4	0.893	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
3R	20220205	3R_20220205_SNP [dm3] 3R_24394483_SNP [dm6]	A	T	4.552e^-4	0.893	UTR_3_PRIME nAChRalpha1 DOWNSTREAM CG13616
3R	15142828	3R_15142828_SNP [dm3] 3R_19317106_SNP [dm6]	G	T	4.555e^-4	0.893	INTRON Dl	TF binding site BDTNP1_TFBS_dl
3R	24967297	3R_24967297_SNP [dm3] 3R_29141575_SNP [dm6]	C	T	4.560e^-4	0.893	INTRON CG14516
3L	19182974	3L_19182974_SNP [dm3] 3L_19189874_SNP [dm6]	C	T	4.562e^-4	0.893	INTRON fz2
3R	22248545	3R_22248545_SNP [dm3] 3R_26422823_SNP [dm6]	A	T	4.565e^-4	0.893	INTERGENIC
X	18976512	X_18976512_SNP [dm3] X_19082479_SNP [dm6]	T	C	4.565e^-4	0.893	UTR_3_PRIME CG14191 DOWNSTREAM CG7423	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5743881	2L_5743881_SNP [dm3] 2L_5743881_SNP [dm6]	C	G	4.574e^-4	0.893	INTRON CG11030
2L	5743654	2L_5743654_SNP [dm3] 2L_5743654_SNP [dm6]	T	C	4.577e^-4	0.893	INTRON CG11030
3R	8884868	3R_8884868_SNP [dm3] 3R_13059146_SNP [dm6]	T	C	4.580e^-4	0.893	INTRON sim	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	11943110	3R_11943110_SNP [dm3] 3R_16117388_SNP [dm6]	C	T	4.587e^-4	0.893	INTRON Sb
3L	7952814	3L_7952814_SNP [dm3] 3L_7959714_SNP [dm6]	G	A	4.588e^-4	0.893	INTERGENIC
2L	5737537	2L_5737537_SNP [dm3] 2L_5737537_SNP [dm6]	T	G	4.597e^-4	0.893	INTRON CG11030 & 1 other
2R	5443617	2R_5443617_SNP [dm3] 2R_9556112_SNP [dm6]	C	T	4.614e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20226369	3R_20226369_SNP [dm3] 3R_24400647_SNP [dm6]	C	T	4.618e^-4	0.893	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
X	5009476	X_5009476_SNP [dm3] X_5115443_SNP [dm6]	T	G	4.627e^-4	0.893	INTRON rg & 1 other
2R	4159025	2R_4159025_SNP [dm3] 2R_8271520_SNP [dm6]	A	T	4.629e^-4	0.893	INTERGENIC
3R	25673336	3R_25673336_SNP [dm3] 3R_29847614_SNP [dm6]	T	G	4.632e^-4	0.893	INTRON Cad99C
3R	17555493	3R_17555493_SNP [dm3] 3R_21729771_SNP [dm6]	G	T	4.635e^-4	0.893	EXON CR43096
3R	25306113	3R_25306113_SNP [dm3] 3R_29480391_SNP [dm6]	G	A	4.638e^-4	0.893	INTRON Ptp99A
3R	18479328	3R_18479328_DEL [dm3] 3R_22653606_DEL [dm6]	CTAGGTGC	C	4.641e^-4	0.893	INTRON CG45058	TF binding site mE1_TFBS_chinmo
X	6302883	X_6302883_SNP [dm3] X_6408850_SNP [dm6]	T	A	4.641e^-4	0.893	INTERGENIC
2L	7418796	2L_7418796_SNP [dm3] 2L_7418796_SNP [dm6]	T	A	4.650e^-4	0.893	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	12414472	2R_12414472_SNP [dm3] 2R_16526967_SNP [dm6]	A	G	4.663e^-4	0.893	INTRON Sema-2a
2R	12414482	2R_12414482_SNP [dm3] 2R_16526977_SNP [dm6]	A	T	4.663e^-4	0.893	INTRON Sema-2a
2L	10076134	2L_10076134_SNP [dm3] 2L_10076134_SNP [dm6]	A	G	4.677e^-4	0.893	SYNONYMOUS_CODING CG44153
3L	19160501	3L_19160501_SNP [dm3] 3L_19167401_SNP [dm6]	T	C	4.687e^-4	0.893	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19025820	3R_19025820_SNP [dm3] 3R_23200098_SNP [dm6]	T	A	4.690e^-4	0.893	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	18171627	2L_18171627_SNP [dm3] 2L_18171627_SNP [dm6]	A	T	4.708e^-4	0.893	INTRON CG42750
X	12963367	X_12963367_SNP [dm3] X_13069334_SNP [dm6]	C	T	4.709e^-4	0.893	INTRON rad
3R	17555273	3R_17555273_SNP [dm3] 3R_21729551_SNP [dm6]	G	C	4.714e^-4	0.893	EXON CR43096
2L	18152861	2L_18152861_SNP [dm3] 2L_18152861_SNP [dm6]	A	T	4.715e^-4	0.893	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	5743559	2L_5743559_SNP [dm3] 2L_5743559_SNP [dm6]	G	A	4.723e^-4	0.893	INTRON CG11030
3L	10100920	3L_10100920_SNP [dm3] 3L_10107820_SNP [dm6]	A	G	4.727e^-4	0.893	INTRON dpr6
X	4044619	X_4044619_SNP [dm3] X_4150586_SNP [dm6]	G	T	4.732e^-4	0.893	INTRON Fas2
2R	16194922	2R_16194922_DEL [dm3] 2R_20307417_DEL [dm6]	TT	T	4.733e^-4	0.893	INTRON CG11200	TF binding site mE1_TFBS_inv
2L	12575809	2L_12575809_SNP [dm3] 2L_12575809_SNP [dm6]	A	G	4.743e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	18083439	2L_18083439_SNP [dm3] 2L_18083439_SNP [dm6]	C	T	4.744e^-4	0.893	SYNONYMOUS_CODING ninaD UPSTREAM CG31741 DOWNSTREAM ninaD
3L	4015088	3L_4015088_SNP [dm3] 3L_4015088_SNP [dm6]	T	A	4.747e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	10938670	2L_10938670_SNP [dm3] 2L_10938670_SNP [dm6]	T	C	4.748e^-4	0.893	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11182177	2R_11182177_DEL [dm3] 2R_15294672_DEL [dm6]	TTTAACTTGTTGTTCGCT...	T	4.756e^-4	0.893	INTRON Trpm EXON CR44241
3R	10823256	3R_10823256_SNP [dm3] 3R_14997534_SNP [dm6]	T	G	4.765e^-4	0.893	INTERGENIC
3R	21620617	3R_21620617_SNP [dm3] 3R_25794895_SNP [dm6]	T	C	4.771e^-4	0.893	UPSTREAM CR43633 EXON CR43634
3R	25595053	3R_25595053_SNP [dm3] 3R_29769331_SNP [dm6]	G	A	4.773e^-4	0.893	INTRON kay
2L	6970419	2L_6970419_SNP [dm3] 2L_6970419_SNP [dm6]	T	A	4.784e^-4	0.893	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8588635	3L_8588635_DEL [dm3] 3L_8595535_DEL [dm6]	ACA	A	4.789e^-4	0.893	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	22586874	3L_22586874_SNP [dm3] 3L_22593774_SNP [dm6]	G	A	4.805e^-4	0.893	INTRON CG14459
3L	8590130	3L_8590130_SNP [dm3] 3L_8597030_SNP [dm6]	C	T	4.807e^-4	0.893	SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
3R	24582066	3R_24582066_SNP [dm3] 3R_28756344_SNP [dm6]	T	C	4.828e^-4	0.893	SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
3L	1396508	3L_1396508_SNP [dm3] 3L_1396508_SNP [dm6]	G	A	4.833e^-4	0.893	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
3L	17475875	3L_17475875_SNP [dm3] 3L_17482775_SNP [dm6]	C	T	4.834e^-4	0.893	INTRON CG6333
3R	23246514	3R_23246514_SNP [dm3] 3R_27420792_SNP [dm6]	T	G	4.836e^-4	0.893	INTRON side
2L	3304659	2L_3304659_INS [dm3] 2L_3304659_INS [dm6]	A	AA	4.836e^-4	0.893	UTR_5_PRIME CG3277
2L	10753232	2L_10753232_SNP [dm3] 2L_10753232_SNP [dm6]	T	C	4.845e^-4	0.893	INTRON CG17124
2R	1696677	2R_1696677_SNP [dm3] 2R_5809172_SNP [dm6]	T	A	4.845e^-4	0.893	INTRON dpr12	TF binding site BDTNP1_TFBS_dl
3R	15345454	3R_15345454_SNP [dm3] 3R_19519732_SNP [dm6]	A	G	4.854e^-4	0.893	INTRON Dys
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	4.856e^-4	0.893	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
X	565417	X_565417_SNP [dm3] X_671384_SNP [dm6]	A	T	4.863e^-4	0.893	INTERGENIC
3L	9356678	3L_9356678_SNP [dm3] 3L_9363578_SNP [dm6]	C	T	4.871e^-4	0.893	SYNONYMOUS_CODING Klp67A UPSTREAM CG4447 DOWNSTREAM CG34456
2L	11409272	2L_11409272_SNP [dm3] 2L_11409272_SNP [dm6]	T	C	4.878e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs
3L	9896094	3L_9896094_SNP [dm3] 3L_9902994_SNP [dm6]	G	A	4.891e^-4	0.893	UTR_3_PRIME nudE DOWNSTREAM nudE
2L	18164080	2L_18164080_SNP [dm3] 2L_18164080_SNP [dm6]	T	G	4.899e^-4	0.893	INTRON CG42750
3R	1939759	3R_1939759_SNP [dm3] 3R_6114037_SNP [dm6]	T	C	4.899e^-4	0.893	INTERGENIC
2R	17568866	2R_17568866_SNP [dm3] 2R_21681361_SNP [dm6]	T	G	4.899e^-4	0.893	INTRON CG30263
3R	24612316	3R_24612316_SNP [dm3] 3R_28786594_SNP [dm6]	T	G	4.904e^-4	0.893	INTERGENIC
3R	19530901	3R_19530901_SNP [dm3] 3R_23705179_SNP [dm6]	G	T	4.907e^-4	0.893	DOWNSTREAM CG31413 INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24654620	3R_24654620_SNP [dm3] 3R_28828898_SNP [dm6]	C	T	4.907e^-4	0.893	INTRON WASp
3R	26784089	3R_26784089_DEL [dm3] 3R_30958367_DEL [dm6]	GCAATTCG	G	4.912e^-4	0.893	INTERGENIC
X	663990	X_663990_SNP [dm3] X_769957_SNP [dm6]	C	G	4.921e^-4	0.893	UTR_5_PRIME fz3 UPSTREAM fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	13261667	2L_13261667_SNP [dm3] 2L_13261667_SNP [dm6]	T	G	4.921e^-4	0.893	UTR_5_PRIME CG44085 INTRON CG44085
3L	9056186	3L_9056186_SNP [dm3] 3L_9063086_SNP [dm6]	C	T	4.924e^-4	0.893	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1
X	12881475	X_12881475_DEL [dm3] X_12987442_DEL [dm6]	CACTCGGACCTACCAAGGCT...	G	4.932e^-4	0.893	INTERGENIC
2R	12180022	2R_12180022_SNP [dm3] 2R_16292517_SNP [dm6]	C	T	4.934e^-4	0.893	SYNONYMOUS_CODING CG7747 DOWNSTREAM CG30100 & 1 other
2R	8798673	2R_8798673_SNP [dm3] 2R_12911168_SNP [dm6]	C	T	4.941e^-4	0.893	INTERGENIC
2L	9722776	2L_9722776_SNP [dm3] 2L_9722776_SNP [dm6]	G	A	4.943e^-4	0.893	SYNONYMOUS_CODING Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18187868	2L_18187868_SNP [dm3] 2L_18187868_SNP [dm6]	T	C	4.947e^-4	0.893	INTRON CG42750
3R	4211473	3R_4211473_SNP [dm3] 3R_8385751_SNP [dm6]	C	G	4.951e^-4	0.893	NON_SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20033918	2R_20033918_SNP [dm3] 2R_24146395_SNP [dm6]	A	T	4.955e^-4	0.893	UPSTREAM Dat INTRON Dat
3R	18116618	3R_18116618_SNP [dm3] 3R_22290896_SNP [dm6]	C	T	4.960e^-4	0.893	INTRON SKIP
2R	490145	2R_490145_SNP [dm3] 2R_4602640_SNP [dm6]	T	C	4.962e^-4	0.893	INTRON p120ctn
X	19885276	X_19885276_SNP [dm3] X_19991243_SNP [dm6]	T	G	4.964e^-4	0.893	INTERGENIC
3R	7829481	3R_7829481_SNP [dm3] 3R_12003759_SNP [dm6]	T	C	4.981e^-4	0.893	DOWNSTREAM Ect3 INTRON Tk
2R	17568758	2R_17568758_DEL [dm3] 2R_21681253_DEL [dm6]	TT	T	4.988e^-4	0.893	INTRON CG30263	TF binding site mE1_TFBS_chinmo
2R	10803991	2R_10803991_SNP [dm3] 2R_14916486_SNP [dm6]	T	C	4.990e^-4	0.893	INTRON CG10249

By genomic position
Variant impact
Gene name

se_PhototaxisScor_4w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results