DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.738e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0002867
In_3R_K	0.0050830

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.3184	0.0021
In_3R_K	8.9153	0.0116

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2295 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13880214	2L_13880214_INS [dm3] 2L_13880214_INS [dm6]	A	AA	3.774e^-7	0.523	INTRON CenG1A
3L	1071260	3L_1071260_DEL [dm3] 3L_1071260_DEL [dm6]	CTTCGCTCTGC...	C	1.040e^-6	0.523	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	13500570	2L_13500570_SNP [dm3] 2L_13500570_SNP [dm6]	C	A	2.373e^-6	0.523	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25482384	3R_25482384_DEL [dm3] 3R_29656662_DEL [dm6]	GG	G	2.401e^-6	0.523	INTRON Dop1R2
3L	16031067	3L_16031067_SNP [dm3] 3L_16037967_SNP [dm6]	T	C	2.430e^-6	0.523	DOWNSTREAM CG5895 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
2R	19256497	2R_19256497_SNP [dm3] 2R_23368974_SNP [dm6]	A	T	3.233e^-6	0.523	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2L	6950235	2L_6950235_SNP [dm3] 2L_6950235_SNP [dm6]	T	A	3.424e^-6	0.523	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	14257184	3L_14257184_SNP [dm3] 3L_14264084_SNP [dm6]	A	C	3.588e^-6	0.523	INTERGENIC
3L	14257114	3L_14257114_SNP [dm3] 3L_14264014_SNP [dm6]	A	T	3.771e^-6	0.523	INTERGENIC
3L	14257117	3L_14257117_INS [dm3] 3L_14264017_INS [dm6]	A	CG	3.771e^-6	0.523	INTERGENIC
3L	14257161	3L_14257161_SNP [dm3] 3L_14264061_SNP [dm6]	T	C	3.788e^-6	0.523	INTERGENIC
3L	14257160	3L_14257160_SNP [dm3] 3L_14264060_SNP [dm6]	T	A	4.142e^-6	0.523	INTERGENIC
2L	5872541	2L_5872541_SNP [dm3] 2L_5872541_SNP [dm6]	C	G	4.225e^-6	0.523	INTRON rau	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14897935	2R_14897935_SNP [dm3] 2R_19010430_SNP [dm6]	T	C	4.334e^-6	0.523	INTERGENIC
3L	14257194	3L_14257194_SNP [dm3] 3L_14264094_SNP [dm6]	T	G	4.913e^-6	0.523	INTERGENIC
3L	14258119	3L_14258119_SNP [dm3] 3L_14265019_SNP [dm6]	A	T	5.526e^-6	0.523	INTERGENIC
3L	14257197	3L_14257197_SNP [dm3] 3L_14264097_SNP [dm6]	C	T	5.633e^-6	0.523	INTERGENIC
3R	10966801	3R_10966801_SNP [dm3] 3R_15141079_SNP [dm6]	C	T	5.695e^-6	0.523	NON_SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8756302	2L_8756302_SNP [dm3] 2L_8756302_SNP [dm6]	C	T	5.842e^-6	0.523	INTERGENIC
3R	25287771	3R_25287771_SNP [dm3] 3R_29462049_SNP [dm6]	C	A	5.935e^-6	0.523	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	13108620	2L_13108620_SNP [dm3] 2L_13108620_SNP [dm6]	G	T	6.130e^-6	0.523	SYNONYMOUS_CODING CG5142
2L	3060270	2L_3060270_SNP [dm3] 2L_3060270_SNP [dm6]	T	G	6.386e^-6	0.523	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13547154	2L_13547154_SNP [dm3] 2L_13547154_SNP [dm6]	C	T	6.569e^-6	0.523	UTR_5_PRIME B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6950220	2L_6950220_SNP [dm3] 2L_6950220_SNP [dm6]	A	G	6.697e^-6	0.523	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2251201	3L_2251201_SNP [dm3] 3L_2251201_SNP [dm6]	C	G	7.143e^-6	0.536	INTRON CG32305	TF binding site mE1_TFBS_cad
2L	6949544	2L_6949544_SNP [dm3] 2L_6949544_SNP [dm6]	T	A	7.651e^-6	0.552	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13140699	3L_13140699_SNP [dm3] 3L_13147599_SNP [dm6]	T	C	8.258e^-6	0.574	INTERGENIC
3R	10955487	3R_10955487_SNP [dm3] 3R_15129765_SNP [dm6]	T	G	9.443e^-6	0.625	DOWNSTREAM mir-2493 INTRON CG42788
X	15043321	X_15043321_DEL [dm3] X_15149288_DEL [dm6]	CCATAGATGATC...	C	9.668e^-6	0.625	INTRON CG9095
2R	18490088	2R_18490088_SNP [dm3] 2R_22602583_SNP [dm6]	C	T	1.052e^-5	0.658	NON_SYNONYMOUS_CODING CG4294
3R	17062600	3R_17062600_SNP [dm3] 3R_21236878_SNP [dm6]	A	T	1.087e^-5	0.658	INTRON e
3R	16763675	3R_16763675_SNP [dm3] 3R_20937953_SNP [dm6]	C	G	1.136e^-5	0.666	INTRON CG31191
2L	5841146	2L_5841146_SNP [dm3] 2L_5841146_SNP [dm6]	T	A	1.217e^-5	0.674	INTRON TrissinR
2L	10917939	2L_10917939_SNP [dm3] 2L_10917939_SNP [dm6]	G	A	1.229e^-5	0.674	SYNONYMOUS_CODING dpr2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14257198	3L_14257198_SNP [dm3] 3L_14264098_SNP [dm6]	C	T	1.258e^-5	0.674	INTERGENIC
2R	18490345	2R_18490345_SNP [dm3] 2R_22602840_SNP [dm6]	C	A	1.353e^-5	0.705	NON_SYNONYMOUS_CODING CG4294
2L	13993221	2L_13993221_SNP [dm3] 2L_13993221_SNP [dm6]	A	T	1.468e^-5	0.722	SYNONYMOUS_CODING rk
3L	13141572	3L_13141572_SNP [dm3] 3L_13148472_SNP [dm6]	A	T	1.469e^-5	0.722	INTERGENIC
3R	26757268	3R_26757268_SNP [dm3] 3R_30931546_SNP [dm6]	T	C	1.501e^-5	0.722	DOWNSTREAM Ptx1 INTERGENIC
2L	3046946	2L_3046946_INS [dm3] 2L_3046946_INS [dm6]	A	ACA	1.557e^-5	0.727	SPLICE_SITE_REGION v_2_k05816 DOWNSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25116723	3R_25116723_SNP [dm3] 3R_29291001_SNP [dm6]	A	G	1.604e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16722372	X_16722372_SNP [dm3] X_16828339_SNP [dm6]	T	C	1.734e^-5	0.727	UPSTREAM CG13004 INTRON CG13004
2R	8840116	2R_8840116_SNP [dm3] 2R_12952611_SNP [dm6]	A	G	1.935e^-5	0.727	UPSTREAM CG13321 & 2 others INTERGENIC
X	20391580	X_20391580_SNP [dm3] X_20520553_SNP [dm6]	A	G	2.044e^-5	0.727	INTRON Tak1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16576875	2L_16576875_SNP [dm3] 2L_16576875_SNP [dm6]	T	G	2.090e^-5	0.727	INTRON CG42389
3R	7095549	3R_7095549_SNP [dm3] 3R_11269827_SNP [dm6]	T	C	2.103e^-5	0.727	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13669631	3R_13669631_SNP [dm3] 3R_17843909_SNP [dm6]	C	T	2.128e^-5	0.727	INTRON tinc
3L	13543406	3L_13543406_INS [dm3] 3L_13550306_INS [dm6]	A	AA	2.291e^-5	0.727	INTRON bru-3
2R	13354995	2R_13354995_SNP [dm3] 2R_17467490_SNP [dm6]	G	A	2.317e^-5	0.727	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5870618	2L_5870618_SNP [dm3] 2L_5870618_SNP [dm6]	C	A	2.391e^-5	0.727	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6114113	2L_6114113_SNP [dm3] 2L_6114113_SNP [dm6]	C	A	2.414e^-5	0.727	INTRON stai
X	8471524	X_8471524_SNP [dm3] X_8577491_SNP [dm6]	T	A	2.477e^-5	0.727	INTRON CG12065
X	16722358	X_16722358_SNP [dm3] X_16828325_SNP [dm6]	C	T	2.495e^-5	0.727	UPSTREAM CG13004 INTRON CG13004
3R	25850093	3R_25850093_SNP [dm3] 3R_30024371_SNP [dm6]	A	T	2.507e^-5	0.727	INTRON Axn
2L	6124789	2L_6124789_SNP [dm3] 2L_6124789_SNP [dm6]	C	T	2.529e^-5	0.727	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	19256668	2R_19256668_SNP [dm3] 2R_23369145_SNP [dm6]	A	G	2.576e^-5	0.727	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	16543080	2R_16543080_SNP [dm3] 2R_20655575_SNP [dm6]	C	T	2.582e^-5	0.727	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2L	5841073	2L_5841073_SNP [dm3] 2L_5841073_SNP [dm6]	C	T	2.631e^-5	0.727	INTRON TrissinR
3R	25908246	3R_25908246_DEL [dm3] 3R_30082524_DEL [dm6]	CGTA	C	2.682e^-5	0.727	INTRON sima
3R	13669622	3R_13669622_SNP [dm3] 3R_17843900_SNP [dm6]	C	T	2.745e^-5	0.727	INTRON tinc
3R	25164901	3R_25164901_SNP [dm3] 3R_29339179_SNP [dm6]	G	A	2.758e^-5	0.727	INTERGENIC
2L	5869615	2L_5869615_DEL [dm3] 2L_5869615_DEL [dm6]	CGGTTTTATGGCATG...	C	2.881e^-5	0.727	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	4857393	2L_4857393_SNP [dm3] 2L_4857393_SNP [dm6]	C	A	2.926e^-5	0.727	INTRON pog
X	9229060	X_9229060_SNP [dm3] X_9335027_SNP [dm6]	T	A	2.956e^-5	0.727	INTRON CG34449
2R	14897950	2R_14897950_SNP [dm3] 2R_19010445_SNP [dm6]	G	A	2.986e^-5	0.727	INTERGENIC
3L	17591615	3L_17591615_SNP [dm3] 3L_17598515_SNP [dm6]	G	T	3.069e^-5	0.727	INTRON Eip74EF	TF binding site mE1_TFBS_cad
2R	4284167	2R_4284167_SNP [dm3] 2R_8396662_SNP [dm6]	A	T	3.088e^-5	0.727	DOWNSTREAM pdm3 INTRON CG2121	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6950734	2L_6950734_SNP [dm3] 2L_6950734_SNP [dm6]	A	C	3.139e^-5	0.727	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18378436	3R_18378436_SNP [dm3] 3R_22552714_SNP [dm6]	A	T	3.155e^-5	0.727	UPSTREAM bond & 1 other INTRON bond
3L	13141549	3L_13141549_SNP [dm3] 3L_13148449_SNP [dm6]	C	T	3.191e^-5	0.727	INTERGENIC
2L	6124825	2L_6124825_SNP [dm3] 2L_6124825_SNP [dm6]	T	G	3.194e^-5	0.727	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	10821394	2R_10821394_SNP [dm3] 2R_14933889_SNP [dm6]	G	T	3.221e^-5	0.727	UTR_3_PRIME CG12853 UPSTREAM CG10253 INTRON CG10253	TF binding site mE1_TFBS_Trl
2R	8838049	2R_8838049_SNP [dm3] 2R_12950544_SNP [dm6]	G	A	3.221e^-5	0.727	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad
X	17130157	X_17130157_SNP [dm3] X_17236124_SNP [dm6]	A	G	3.236e^-5	0.727	INTRON f
2R	14119577	2R_14119577_SNP [dm3] 2R_18232072_SNP [dm6]	C	A	3.253e^-5	0.727	UPSTREAM CR45311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25584845	3R_25584845_SNP [dm3] 3R_29759123_SNP [dm6]	A	G	3.339e^-5	0.727	UPSTREAM CR44953 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12179505	2L_12179505_SNP [dm3] 2L_12179505_SNP [dm6]	C	G	3.347e^-5	0.727	INTRON aret
2L	7465147	2L_7465147_DEL [dm3] 2L_7465147_DEL [dm6]	AA	A	3.380e^-5	0.727	INTERGENIC
2R	17029069	2R_17029069_SNP [dm3] 2R_21141564_SNP [dm6]	A	G	3.396e^-5	0.727	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	20755190	2L_20755190_SNP [dm3] 2L_20755190_SNP [dm6]	A	G	3.477e^-5	0.727	SYNONYMOUS_CODING CG9323 DOWNSTREAM Ns4
3R	10955669	3R_10955669_SNP [dm3] 3R_15129947_SNP [dm6]	T	C	3.497e^-5	0.727	DOWNSTREAM mir-2493 INTRON CG42788
3L	9132999	3L_9132999_SNP [dm3] 3L_9139899_SNP [dm6]	T	A	3.538e^-5	0.727	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad
2L	20563982	2L_20563982_SNP [dm3] 2L_20563982_SNP [dm6]	G	A	3.547e^-5	0.727	INTRON CR45347
2L	5840861	2L_5840861_SNP [dm3] 2L_5840861_SNP [dm6]	G	A	3.571e^-5	0.727	INTRON TrissinR
3L	9389692	3L_9389692_SNP [dm3] 3L_9396592_SNP [dm6]	T	C	3.651e^-5	0.727	INTRON CG4080
2R	16454405	2R_16454405_SNP [dm3] 2R_20566900_SNP [dm6]	T	G	3.679e^-5	0.727	INTRON qsm
3L	19386279	3L_19386279_SNP [dm3] 3L_19393179_SNP [dm6]	T	C	3.714e^-5	0.727	INTRON CG32206
2L	3025657	2L_3025657_SNP [dm3] 2L_3025657_SNP [dm6]	G	T	3.724e^-5	0.727	DOWNSTREAM CG3605 INTRON CG3542
3L	7514524	3L_7514524_SNP [dm3] 3L_7521424_SNP [dm6]	G	T	3.737e^-5	0.727	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18490004	2R_18490004_SNP [dm3] 2R_22602499_SNP [dm6]	C	A	3.759e^-5	0.727	NON_SYNONYMOUS_CODING CG4294
3R	4405673	3R_4405673_SNP [dm3] 3R_8579951_SNP [dm6]	T	C	3.793e^-5	0.727	INTRON 5-HT2B
3R	2614969	3R_2614969_SNP [dm3] 3R_6789247_SNP [dm6]	T	C	3.795e^-5	0.727	INTERGENIC
3L	11422073	3L_11422073_SNP [dm3] 3L_11428973_SNP [dm6]	G	C	3.820e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18104742	3R_18104742_SNP [dm3] 3R_22279020_SNP [dm6]	C	T	3.885e^-5	0.727	INTRON SKIP
2R	7676076	2R_7676076_SNP [dm3] 2R_11788571_SNP [dm6]	A	G	3.886e^-5	0.727	NON_SYNONYMOUS_CODING Ir48c INTRON ths	TF binding site mE1_TFBS_sens
3R	7095555	3R_7095555_DEL [dm3] 3R_11269833_DEL [dm6]	TT	T	3.936e^-5	0.727	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	3.946e^-5	0.727	INTRON nwk
2L	3025654	2L_3025654_SNP [dm3] 2L_3025654_SNP [dm6]	C	T	3.971e^-5	0.727	DOWNSTREAM CG3605 INTRON CG3542
3L	22888702	3L_22888702_SNP [dm3] 3L_22895602_SNP [dm6]	A	G	3.981e^-5	0.727	UPSTREAM CR44688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	3.989e^-5	0.727	INTRON CG44153 & 1 other

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.989e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02858

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.8868	0.0527

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2144 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	21691827	2L_21691827_SNP [dm3] 2L_21691827_SNP [dm6]	G	A	3.075e^-7	0.577	INTRON CG31619
3R	25482384	3R_25482384_DEL [dm3] 3R_29656662_DEL [dm6]	GG	G	1.282e^-6	0.792	INTRON Dop1R2
2L	21702529	2L_21702529_INS [dm3] 2L_21702529_INS [dm6]	A	AAACAGCCACCAAA...	1.559e^-6	0.792	INTRON CG31619
3R	26518013	3R_26518013_SNP [dm3] 3R_30692291_SNP [dm6]	G	A	1.688e^-6	0.792	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	2.918e^-6	0.81	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	20016162	2R_20016162_SNP [dm3] 2R_24128639_SNP [dm6]	T	A	3.728e^-6	0.81	INTRON tamo	TF binding site mE1_TFBS_chinmo
3L	16881379	3L_16881379_SNP [dm3] 3L_16888279_SNP [dm6]	T	C	4.256e^-6	0.81	INTRON Lmpt
3R	22935949	3R_22935949_SNP [dm3] 3R_27110227_SNP [dm6]	T	C	4.439e^-6	0.81	SYNONYMOUS_CODING gb EXON CR45209
X	9712715	X_9712715_INS [dm3] X_9818682_INS [dm6]	A	AG	4.563e^-6	0.81	INTRON CG32698
3R	25116732	3R_25116732_SNP [dm3] 3R_29291010_SNP [dm6]	A	T	6.077e^-6	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22936285	3R_22936285_SNP [dm3] 3R_27110563_SNP [dm6]	T	C	6.657e^-6	0.81	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14638071	X_14638071_SNP [dm3] X_14744038_SNP [dm6]	A	T	6.808e^-6	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11214218	3L_11214218_DEL [dm3] 3L_11221118_DEL [dm6]	ATA	A	1.044e^-5	0.81	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	21688676	2L_21688676_SNP [dm3] 2L_21688676_SNP [dm6]	C	A	1.102e^-5	0.81	INTRON CG31619
3L	16236586	3L_16236586_SNP [dm3] 3L_16243486_SNP [dm6]	C	T	1.135e^-5	0.81	INTERGENIC
X	3071891	X_3071891_SNP [dm3] X_3177858_SNP [dm6]	G	A	1.162e^-5	0.81	INTRON dnc
2R	20019322	2R_20019322_SNP [dm3] 2R_24131799_SNP [dm6]	C	T	1.235e^-5	0.81	UTR_5_PRIME tamo INTRON tamo
2R	16760728	2R_16760728_SNP [dm3] 2R_20873223_SNP [dm6]	A	C	1.239e^-5	0.81	INTRON Ipk1	TF binding site mE1_TFBS_cad
2L	12135047	2L_12135047_SNP [dm3] 2L_12135047_SNP [dm6]	T	C	1.293e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18291056	2R_18291056_SNP [dm3] 2R_22403551_SNP [dm6]	T	C	1.400e^-5	0.81	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12135110	2L_12135110_SNP [dm3] 2L_12135110_SNP [dm6]	C	A	1.413e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	20574803	3R_20574803_SNP [dm3] 3R_24749081_SNP [dm6]	T	A	1.423e^-5	0.81	UTR_3_PRIME tok UPSTREAM tld	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26517895	3R_26517895_SNP [dm3] 3R_30692173_SNP [dm6]	G	A	1.424e^-5	0.81	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21906626	3R_21906626_SNP [dm3] 3R_26080904_SNP [dm6]	G	T	1.481e^-5	0.81	INTRON dys	TF binding site mE1_TFBS_cad
3R	25116723	3R_25116723_SNP [dm3] 3R_29291001_SNP [dm6]	A	G	1.612e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23305996	3R_23305996_SNP [dm3] 3R_27480274_SNP [dm6]	G	A	1.637e^-5	0.81	SYNONYMOUS_CODING Cyp6a18
3L	15953882	3L_15953882_SNP [dm3] 3L_15960782_SNP [dm6]	C	T	1.641e^-5	0.81	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
3R	25137632	3R_25137632_SNP [dm3] 3R_29311910_SNP [dm6]	C	G	1.649e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14931678	3R_14931678_SNP [dm3] 3R_19105956_SNP [dm6]	C	G	1.759e^-5	0.81	INTRON CG6040
3R	25116733	3R_25116733_SNP [dm3] 3R_29291011_SNP [dm6]	A	G	1.768e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20967759	2L_20967759_SNP [dm3] 2L_20967759_SNP [dm6]	G	T	1.803e^-5	0.81	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20013553	2R_20013553_SNP [dm3] 2R_24126030_SNP [dm6]	G	A	1.810e^-5	0.81	SYNONYMOUS_CODING CG43775 UTR_5_PRIME CG43776 & 1 other UPSTREAM CG43776 & 1 other DOWNSTREAM tamo	TF binding site mE1_TFBS_cad
X	4415761	X_4415761_SNP [dm3] X_4521728_SNP [dm6]	T	A	2.055e^-5	0.81	INTRON CR32773
3R	23905609	3R_23905609_SNP [dm3] 3R_28079887_SNP [dm6]	T	C	2.106e^-5	0.81	INTRON CG34362
3R	25033851	3R_25033851_SNP [dm3] 3R_29208129_SNP [dm6]	T	C	2.159e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19602364	3R_19602364_SNP [dm3] 3R_23776642_SNP [dm6]	G	A	2.171e^-5	0.81	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2698673	3R_2698673_SNP [dm3] 3R_6872951_SNP [dm6]	G	T	2.228e^-5	0.81	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	25157933	3R_25157933_SNP [dm3] 3R_29332211_SNP [dm6]	A	T	2.282e^-5	0.81	INTERGENIC
X	4415871	X_4415871_SNP [dm3] X_4521838_SNP [dm6]	G	T	2.392e^-5	0.81	INTRON CR32773
3R	24633437	3R_24633437_SNP [dm3] 3R_28807715_SNP [dm6]	C	T	2.392e^-5	0.81	DOWNSTREAM wdn & 1 other INTERGENIC
3L	3015082	3L_3015082_SNP [dm3] 3L_3015082_SNP [dm6]	G	A	2.438e^-5	0.81	SYNONYMOUS_CODING CG32488
3L	16628363	3L_16628363_SNP [dm3] 3L_16635263_SNP [dm6]	T	C	2.489e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16628340	3L_16628340_SNP [dm3] 3L_16635240_SNP [dm6]	A	T	2.509e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8839017	2R_8839017_SNP [dm3] 2R_12951512_SNP [dm6]	C	T	2.630e^-5	0.81	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
X	21294037	X_21294037_SNP [dm3] X_21423010_SNP [dm6]	A	T	2.636e^-5	0.81	UTR_3_PRIME CG42343
3L	4269409	3L_4269409_SNP [dm3] 3L_4269409_SNP [dm6]	A	G	2.686e^-5	0.81	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14153758	3L_14153758_SNP [dm3] 3L_14160658_SNP [dm6]	A	T	2.732e^-5	0.81	INTERGENIC	regulatory region REDfly_CRMs
2R	8839933	2R_8839933_SNP [dm3] 2R_12952428_SNP [dm6]	C	T	2.828e^-5	0.81	UPSTREAM CG13321 & 2 others INTERGENIC
3R	22598189	3R_22598189_SNP [dm3] 3R_26772467_SNP [dm6]	A	C	2.922e^-5	0.81	INTERGENIC
2R	6082187	2R_6082187_SNP [dm3] 2R_10194682_SNP [dm6]	A	G	2.967e^-5	0.81	INTERGENIC
2L	21708060	2L_21708060_SNP [dm3] 2L_21708060_SNP [dm6]	T	A	3.103e^-5	0.81	INTRON CG31619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	4415866	X_4415866_SNP [dm3] X_4521833_SNP [dm6]	T	C	3.182e^-5	0.81	INTRON CR32773
3R	24954360	3R_24954360_DEL [dm3] 3R_29128638_DEL [dm6]	AAAAAGTA	A	3.190e^-5	0.81	UTR_3_PRIME dgt6 DOWNSTREAM CG11880
3R	22574022	3R_22574022_SNP [dm3] 3R_26748300_SNP [dm6]	C	T	3.215e^-5	0.81	INTERGENIC
3R	19602373	3R_19602373_SNP [dm3] 3R_23776651_SNP [dm6]	A	G	3.226e^-5	0.81	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21634357	2L_21634357_SNP [dm3] 2L_21634357_SNP [dm6]	T	C	3.227e^-5	0.81	INTRON Ac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8613417	3R_8613417_SNP [dm3] 3R_12787695_SNP [dm6]	C	T	3.261e^-5	0.81	INTERGENIC
X	14638047	X_14638047_SNP [dm3] X_14744014_SNP [dm6]	T	G	3.266e^-5	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10340470	X_10340470_INS [dm3] X_10446437_INS [dm6]	T	TATTTTT	3.290e^-5	0.81	INTRON CG32683
3R	21903301	3R_21903301_SNP [dm3] 3R_26077579_SNP [dm6]	A	C	3.375e^-5	0.81	NON_SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad
3L	16628321	3L_16628321_SNP [dm3] 3L_16635221_SNP [dm6]	C	T	3.426e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8684478	2L_8684478_SNP [dm3] 2L_8684478_SNP [dm6]	A	T	3.583e^-5	0.81	UPSTREAM tRNA:CR31888 & 1 other DOWNSTREAM tRNA:CR31890 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20026057	2R_20026057_SNP [dm3] 2R_24138534_SNP [dm6]	T	G	3.584e^-5	0.81	UPSTREAM CR44826 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
3L	2721819	3L_2721819_SNP [dm3] 3L_2721819_SNP [dm6]	C	A	3.603e^-5	0.81	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22598191	3R_22598191_SNP [dm3] 3R_26772469_SNP [dm6]	G	T	3.666e^-5	0.81	INTERGENIC
2R	19295729	2R_19295729_SNP [dm3] 2R_23408206_SNP [dm6]	A	G	3.670e^-5	0.81	INTERGENIC
3R	25110823	3R_25110823_SNP [dm3] 3R_29285101_SNP [dm6]	G	A	3.676e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	3.715e^-5	0.81	INTRON pHCl
X	14638048	X_14638048_SNP [dm3] X_14744015_SNP [dm6]	G	A	3.719e^-5	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3872751	3L_3872751_SNP [dm3] 3L_3872751_SNP [dm6]	A	T	3.792e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	21970641	2L_21970641_SNP [dm3] 2L_21970641_SNP [dm6]	C	G	3.809e^-5	0.81	INTERGENIC
2L	19825452	2L_19825452_SNP [dm3] 2L_19825452_SNP [dm6]	T	C	3.833e^-5	0.81	INTRON sick
3R	13627028	3R_13627028_SNP [dm3] 3R_17801306_SNP [dm6]	A	G	3.836e^-5	0.81	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
2L	21970644	2L_21970644_SNP [dm3] 2L_21970644_SNP [dm6]	A	G	3.870e^-5	0.81	INTERGENIC
3R	18654837	3R_18654837_SNP [dm3] 3R_22829115_SNP [dm6]	C	A	3.906e^-5	0.81	INTERGENIC
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	3.959e^-5	0.81	INTRON CG44153 & 1 other
X	9405065	X_9405065_DEL [dm3] X_9511032_DEL [dm6]	AA	A	4.008e^-5	0.81	UPSTREAM CG34028 INTRON CG32700
3R	8479936	3R_8479936_SNP [dm3] 3R_12654214_SNP [dm6]	G	A	4.065e^-5	0.81	UPSTREAM CG6225 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11224079	3L_11224079_INS [dm3] 3L_11230979_INS [dm6]	GG	TAAATA	4.082e^-5	0.81	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	19072292	3R_19072292_SNP [dm3] 3R_23246570_SNP [dm6]	T	C	4.214e^-5	0.81	INTRON CG4467
2L	13821096	2L_13821096_SNP [dm3] 2L_13821096_SNP [dm6]	T	C	4.218e^-5	0.81	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20016407	2R_20016407_SNP [dm3] 2R_24128884_SNP [dm6]	A	T	4.228e^-5	0.81	SYNONYMOUS_CODING tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7188830	2L_7188830_SNP [dm3] 2L_7188830_SNP [dm6]	G	C	4.259e^-5	0.81	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20015164	2R_20015164_SNP [dm3] 2R_24127641_SNP [dm6]	C	G	4.292e^-5	0.81	UTR_3_PRIME tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14883745	2R_14883745_SNP [dm3] 2R_18996240_SNP [dm6]	A	G	4.448e^-5	0.81	INTRON tn
2R	20019256	2R_20019256_SNP [dm3] 2R_24131733_SNP [dm6]	G	A	4.524e^-5	0.81	UTR_5_PRIME tamo INTRON tamo
3L	4069027	3L_4069027_SNP [dm3] 3L_4069027_SNP [dm6]	C	A	4.610e^-5	0.81	UPSTREAM CG32259 INTRON wit
3R	25023806	3R_25023806_SNP [dm3] 3R_29198084_SNP [dm6]	A	G	4.650e^-5	0.81	INTRON CG14515	TF binding site mE1_TFBS_chinmo
3R	22987378	3R_22987378_SNP [dm3] 3R_27161656_SNP [dm6]	C	A	4.732e^-5	0.81	INTRON CG5909
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	4.754e^-5	0.81	INTRON Gfrl
3R	26493518	3R_26493518_INS [dm3] 3R_30667796_INS [dm6]	C	CC	4.760e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26106610	3R_26106610_SNP [dm3] 3R_30280888_SNP [dm6]	C	T	4.777e^-5	0.81	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22598218	3R_22598218_SNP [dm3] 3R_26772496_SNP [dm6]	A	T	4.778e^-5	0.81	INTERGENIC
3R	25584845	3R_25584845_SNP [dm3] 3R_29759123_SNP [dm6]	A	G	4.792e^-5	0.81	UPSTREAM CR44953 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4415865	X_4415865_SNP [dm3] X_4521832_SNP [dm6]	A	C	4.853e^-5	0.81	INTRON CR32773
3R	24605408	3R_24605408_DEL [dm3] 3R_28779686_DEL [dm6]	CT	A	4.914e^-5	0.81	INTERGENIC
X	4415773	X_4415773_SNP [dm3] X_4521740_SNP [dm6]	G	A	4.923e^-5	0.81	INTRON CR32773
3L	15954112	3L_15954112_SNP [dm3] 3L_15961012_SNP [dm6]	G	A	4.946e^-5	0.81	SYNONYMOUS_CODING l_3_72Ab DOWNSTREAM CG17032	TF binding site mE1_TFBS_cad
3L	15305828	3L_15305828_SNP [dm3] 3L_15312728_SNP [dm6]	A	T	5.009e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26106401	3R_26106401_SNP [dm3] 3R_30280679_SNP [dm6]	A	G	5.017e^-5	0.81	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

By genomic position
Variant impact
Gene name

mn_PhototaxisScor_4w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results