DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.738e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0002867
In_3R_K	0.0050830

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.3184	0.0021
In_3R_K	8.9153	0.0116

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2295 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13880214	2L_13880214_INS [dm3] 2L_13880214_INS [dm6]	A	AA	3.774e^-7	0.523	INTRON CenG1A
3L	1071260	3L_1071260_DEL [dm3] 3L_1071260_DEL [dm6]	CTTCGCTCTGC...	C	1.040e^-6	0.523	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	13500570	2L_13500570_SNP [dm3] 2L_13500570_SNP [dm6]	C	A	2.373e^-6	0.523	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25482384	3R_25482384_DEL [dm3] 3R_29656662_DEL [dm6]	GG	G	2.401e^-6	0.523	INTRON Dop1R2
3L	16031067	3L_16031067_SNP [dm3] 3L_16037967_SNP [dm6]	T	C	2.430e^-6	0.523	DOWNSTREAM CG5895 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
2R	19256497	2R_19256497_SNP [dm3] 2R_23368974_SNP [dm6]	A	T	3.233e^-6	0.523	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2L	6950235	2L_6950235_SNP [dm3] 2L_6950235_SNP [dm6]	T	A	3.424e^-6	0.523	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	14257184	3L_14257184_SNP [dm3] 3L_14264084_SNP [dm6]	A	C	3.588e^-6	0.523	INTERGENIC
3L	14257114	3L_14257114_SNP [dm3] 3L_14264014_SNP [dm6]	A	T	3.771e^-6	0.523	INTERGENIC
3L	14257117	3L_14257117_INS [dm3] 3L_14264017_INS [dm6]	A	CG	3.771e^-6	0.523	INTERGENIC
3L	14257161	3L_14257161_SNP [dm3] 3L_14264061_SNP [dm6]	T	C	3.788e^-6	0.523	INTERGENIC
3L	14257160	3L_14257160_SNP [dm3] 3L_14264060_SNP [dm6]	T	A	4.142e^-6	0.523	INTERGENIC
2L	5872541	2L_5872541_SNP [dm3] 2L_5872541_SNP [dm6]	C	G	4.225e^-6	0.523	INTRON rau	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14897935	2R_14897935_SNP [dm3] 2R_19010430_SNP [dm6]	T	C	4.334e^-6	0.523	INTERGENIC
3L	14257194	3L_14257194_SNP [dm3] 3L_14264094_SNP [dm6]	T	G	4.913e^-6	0.523	INTERGENIC
3L	14258119	3L_14258119_SNP [dm3] 3L_14265019_SNP [dm6]	A	T	5.526e^-6	0.523	INTERGENIC
3L	14257197	3L_14257197_SNP [dm3] 3L_14264097_SNP [dm6]	C	T	5.633e^-6	0.523	INTERGENIC
3R	10966801	3R_10966801_SNP [dm3] 3R_15141079_SNP [dm6]	C	T	5.695e^-6	0.523	NON_SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8756302	2L_8756302_SNP [dm3] 2L_8756302_SNP [dm6]	C	T	5.842e^-6	0.523	INTERGENIC
3R	25287771	3R_25287771_SNP [dm3] 3R_29462049_SNP [dm6]	C	A	5.935e^-6	0.523	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	13108620	2L_13108620_SNP [dm3] 2L_13108620_SNP [dm6]	G	T	6.130e^-6	0.523	SYNONYMOUS_CODING CG5142
2L	3060270	2L_3060270_SNP [dm3] 2L_3060270_SNP [dm6]	T	G	6.386e^-6	0.523	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13547154	2L_13547154_SNP [dm3] 2L_13547154_SNP [dm6]	C	T	6.569e^-6	0.523	UTR_5_PRIME B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6950220	2L_6950220_SNP [dm3] 2L_6950220_SNP [dm6]	A	G	6.697e^-6	0.523	UPSTREAM SA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2251201	3L_2251201_SNP [dm3] 3L_2251201_SNP [dm6]	C	G	7.143e^-6	0.536	INTRON CG32305	TF binding site mE1_TFBS_cad
2L	6949544	2L_6949544_SNP [dm3] 2L_6949544_SNP [dm6]	T	A	7.651e^-6	0.552	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13140699	3L_13140699_SNP [dm3] 3L_13147599_SNP [dm6]	T	C	8.258e^-6	0.574	INTERGENIC
3R	10955487	3R_10955487_SNP [dm3] 3R_15129765_SNP [dm6]	T	G	9.443e^-6	0.625	DOWNSTREAM mir-2493 INTRON CG42788
X	15043321	X_15043321_DEL [dm3] X_15149288_DEL [dm6]	CCATAGATGATC...	C	9.668e^-6	0.625	INTRON CG9095
2R	18490088	2R_18490088_SNP [dm3] 2R_22602583_SNP [dm6]	C	T	1.052e^-5	0.658	NON_SYNONYMOUS_CODING CG4294
3R	17062600	3R_17062600_SNP [dm3] 3R_21236878_SNP [dm6]	A	T	1.087e^-5	0.658	INTRON e
3R	16763675	3R_16763675_SNP [dm3] 3R_20937953_SNP [dm6]	C	G	1.136e^-5	0.666	INTRON CG31191
2L	5841146	2L_5841146_SNP [dm3] 2L_5841146_SNP [dm6]	T	A	1.217e^-5	0.674	INTRON TrissinR
2L	10917939	2L_10917939_SNP [dm3] 2L_10917939_SNP [dm6]	G	A	1.229e^-5	0.674	SYNONYMOUS_CODING dpr2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14257198	3L_14257198_SNP [dm3] 3L_14264098_SNP [dm6]	C	T	1.258e^-5	0.674	INTERGENIC
2R	18490345	2R_18490345_SNP [dm3] 2R_22602840_SNP [dm6]	C	A	1.353e^-5	0.705	NON_SYNONYMOUS_CODING CG4294
2L	13993221	2L_13993221_SNP [dm3] 2L_13993221_SNP [dm6]	A	T	1.468e^-5	0.722	SYNONYMOUS_CODING rk
3L	13141572	3L_13141572_SNP [dm3] 3L_13148472_SNP [dm6]	A	T	1.469e^-5	0.722	INTERGENIC
3R	26757268	3R_26757268_SNP [dm3] 3R_30931546_SNP [dm6]	T	C	1.501e^-5	0.722	DOWNSTREAM Ptx1 INTERGENIC
2L	3046946	2L_3046946_INS [dm3] 2L_3046946_INS [dm6]	A	ACA	1.557e^-5	0.727	SPLICE_SITE_REGION v_2_k05816 DOWNSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25116723	3R_25116723_SNP [dm3] 3R_29291001_SNP [dm6]	A	G	1.604e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16722372	X_16722372_SNP [dm3] X_16828339_SNP [dm6]	T	C	1.734e^-5	0.727	UPSTREAM CG13004 INTRON CG13004
2R	8840116	2R_8840116_SNP [dm3] 2R_12952611_SNP [dm6]	A	G	1.935e^-5	0.727	UPSTREAM CG13321 & 2 others INTERGENIC
X	20391580	X_20391580_SNP [dm3] X_20520553_SNP [dm6]	A	G	2.044e^-5	0.727	INTRON Tak1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16576875	2L_16576875_SNP [dm3] 2L_16576875_SNP [dm6]	T	G	2.090e^-5	0.727	INTRON CG42389
3R	7095549	3R_7095549_SNP [dm3] 3R_11269827_SNP [dm6]	T	C	2.103e^-5	0.727	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13669631	3R_13669631_SNP [dm3] 3R_17843909_SNP [dm6]	C	T	2.128e^-5	0.727	INTRON tinc
3L	13543406	3L_13543406_INS [dm3] 3L_13550306_INS [dm6]	A	AA	2.291e^-5	0.727	INTRON bru-3
2R	13354995	2R_13354995_SNP [dm3] 2R_17467490_SNP [dm6]	G	A	2.317e^-5	0.727	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5870618	2L_5870618_SNP [dm3] 2L_5870618_SNP [dm6]	C	A	2.391e^-5	0.727	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6114113	2L_6114113_SNP [dm3] 2L_6114113_SNP [dm6]	C	A	2.414e^-5	0.727	INTRON stai
X	8471524	X_8471524_SNP [dm3] X_8577491_SNP [dm6]	T	A	2.477e^-5	0.727	INTRON CG12065
X	16722358	X_16722358_SNP [dm3] X_16828325_SNP [dm6]	C	T	2.495e^-5	0.727	UPSTREAM CG13004 INTRON CG13004
3R	25850093	3R_25850093_SNP [dm3] 3R_30024371_SNP [dm6]	A	T	2.507e^-5	0.727	INTRON Axn
2L	6124789	2L_6124789_SNP [dm3] 2L_6124789_SNP [dm6]	C	T	2.529e^-5	0.727	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	19256668	2R_19256668_SNP [dm3] 2R_23369145_SNP [dm6]	A	G	2.576e^-5	0.727	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	16543080	2R_16543080_SNP [dm3] 2R_20655575_SNP [dm6]	C	T	2.582e^-5	0.727	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2L	5841073	2L_5841073_SNP [dm3] 2L_5841073_SNP [dm6]	C	T	2.631e^-5	0.727	INTRON TrissinR
3R	25908246	3R_25908246_DEL [dm3] 3R_30082524_DEL [dm6]	CGTA	C	2.682e^-5	0.727	INTRON sima
3R	13669622	3R_13669622_SNP [dm3] 3R_17843900_SNP [dm6]	C	T	2.745e^-5	0.727	INTRON tinc
3R	25164901	3R_25164901_SNP [dm3] 3R_29339179_SNP [dm6]	G	A	2.758e^-5	0.727	INTERGENIC
2L	5869615	2L_5869615_DEL [dm3] 2L_5869615_DEL [dm6]	CGGTTTTATGGCATG...	C	2.881e^-5	0.727	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	4857393	2L_4857393_SNP [dm3] 2L_4857393_SNP [dm6]	C	A	2.926e^-5	0.727	INTRON pog
X	9229060	X_9229060_SNP [dm3] X_9335027_SNP [dm6]	T	A	2.956e^-5	0.727	INTRON CG34449
2R	14897950	2R_14897950_SNP [dm3] 2R_19010445_SNP [dm6]	G	A	2.986e^-5	0.727	INTERGENIC
3L	17591615	3L_17591615_SNP [dm3] 3L_17598515_SNP [dm6]	G	T	3.069e^-5	0.727	INTRON Eip74EF	TF binding site mE1_TFBS_cad
2R	4284167	2R_4284167_SNP [dm3] 2R_8396662_SNP [dm6]	A	T	3.088e^-5	0.727	DOWNSTREAM pdm3 INTRON CG2121	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6950734	2L_6950734_SNP [dm3] 2L_6950734_SNP [dm6]	A	C	3.139e^-5	0.727	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18378436	3R_18378436_SNP [dm3] 3R_22552714_SNP [dm6]	A	T	3.155e^-5	0.727	UPSTREAM bond & 1 other INTRON bond
3L	13141549	3L_13141549_SNP [dm3] 3L_13148449_SNP [dm6]	C	T	3.191e^-5	0.727	INTERGENIC
2L	6124825	2L_6124825_SNP [dm3] 2L_6124825_SNP [dm6]	T	G	3.194e^-5	0.727	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	10821394	2R_10821394_SNP [dm3] 2R_14933889_SNP [dm6]	G	T	3.221e^-5	0.727	UTR_3_PRIME CG12853 UPSTREAM CG10253 INTRON CG10253	TF binding site mE1_TFBS_Trl
2R	8838049	2R_8838049_SNP [dm3] 2R_12950544_SNP [dm6]	G	A	3.221e^-5	0.727	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad
X	17130157	X_17130157_SNP [dm3] X_17236124_SNP [dm6]	A	G	3.236e^-5	0.727	INTRON f
2R	14119577	2R_14119577_SNP [dm3] 2R_18232072_SNP [dm6]	C	A	3.253e^-5	0.727	UPSTREAM CR45311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25584845	3R_25584845_SNP [dm3] 3R_29759123_SNP [dm6]	A	G	3.339e^-5	0.727	UPSTREAM CR44953 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12179505	2L_12179505_SNP [dm3] 2L_12179505_SNP [dm6]	C	G	3.347e^-5	0.727	INTRON aret
2L	7465147	2L_7465147_DEL [dm3] 2L_7465147_DEL [dm6]	AA	A	3.380e^-5	0.727	INTERGENIC
2R	17029069	2R_17029069_SNP [dm3] 2R_21141564_SNP [dm6]	A	G	3.396e^-5	0.727	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	20755190	2L_20755190_SNP [dm3] 2L_20755190_SNP [dm6]	A	G	3.477e^-5	0.727	SYNONYMOUS_CODING CG9323 DOWNSTREAM Ns4
3R	10955669	3R_10955669_SNP [dm3] 3R_15129947_SNP [dm6]	T	C	3.497e^-5	0.727	DOWNSTREAM mir-2493 INTRON CG42788
3L	9132999	3L_9132999_SNP [dm3] 3L_9139899_SNP [dm6]	T	A	3.538e^-5	0.727	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad
2L	20563982	2L_20563982_SNP [dm3] 2L_20563982_SNP [dm6]	G	A	3.547e^-5	0.727	INTRON CR45347
2L	5840861	2L_5840861_SNP [dm3] 2L_5840861_SNP [dm6]	G	A	3.571e^-5	0.727	INTRON TrissinR
3L	9389692	3L_9389692_SNP [dm3] 3L_9396592_SNP [dm6]	T	C	3.651e^-5	0.727	INTRON CG4080
2R	16454405	2R_16454405_SNP [dm3] 2R_20566900_SNP [dm6]	T	G	3.679e^-5	0.727	INTRON qsm
3L	19386279	3L_19386279_SNP [dm3] 3L_19393179_SNP [dm6]	T	C	3.714e^-5	0.727	INTRON CG32206
2L	3025657	2L_3025657_SNP [dm3] 2L_3025657_SNP [dm6]	G	T	3.724e^-5	0.727	DOWNSTREAM CG3605 INTRON CG3542
3L	7514524	3L_7514524_SNP [dm3] 3L_7521424_SNP [dm6]	G	T	3.737e^-5	0.727	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18490004	2R_18490004_SNP [dm3] 2R_22602499_SNP [dm6]	C	A	3.759e^-5	0.727	NON_SYNONYMOUS_CODING CG4294
3R	4405673	3R_4405673_SNP [dm3] 3R_8579951_SNP [dm6]	T	C	3.793e^-5	0.727	INTRON 5-HT2B
3R	2614969	3R_2614969_SNP [dm3] 3R_6789247_SNP [dm6]	T	C	3.795e^-5	0.727	INTERGENIC
3L	11422073	3L_11422073_SNP [dm3] 3L_11428973_SNP [dm6]	G	C	3.820e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18104742	3R_18104742_SNP [dm3] 3R_22279020_SNP [dm6]	C	T	3.885e^-5	0.727	INTRON SKIP
2R	7676076	2R_7676076_SNP [dm3] 2R_11788571_SNP [dm6]	A	G	3.886e^-5	0.727	NON_SYNONYMOUS_CODING Ir48c INTRON ths	TF binding site mE1_TFBS_sens
3R	7095555	3R_7095555_DEL [dm3] 3R_11269833_DEL [dm6]	TT	T	3.936e^-5	0.727	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	3.946e^-5	0.727	INTRON nwk
2L	3025654	2L_3025654_SNP [dm3] 2L_3025654_SNP [dm6]	C	T	3.971e^-5	0.727	DOWNSTREAM CG3605 INTRON CG3542
3L	22888702	3L_22888702_SNP [dm3] 3L_22895602_SNP [dm6]	A	G	3.981e^-5	0.727	UPSTREAM CR44688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	3.989e^-5	0.727	INTRON CG44153 & 1 other
3R	8613417	3R_8613417_SNP [dm3] 3R_12787695_SNP [dm6]	C	T	3.990e^-5	0.727	INTERGENIC
3R	13669160	3R_13669160_SNP [dm3] 3R_17843438_SNP [dm6]	C	G	4.003e^-5	0.727	INTRON tinc
2R	14897894	2R_14897894_SNP [dm3] 2R_19010389_SNP [dm6]	T	C	4.061e^-5	0.727	INTERGENIC
2R	6825137	2R_6825137_SNP [dm3] 2R_10937632_SNP [dm6]	C	T	4.072e^-5	0.727	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3113612	2L_3113612_SNP [dm3] 2L_3113612_SNP [dm6]	A	G	4.130e^-5	0.727	INTRON toc
3R	19029915	3R_19029915_SNP [dm3] 3R_23204193_SNP [dm6]	T	C	4.258e^-5	0.727	UPSTREAM fzo INTRON cnc
2L	18906811	2L_18906811_SNP [dm3] 2L_18906811_SNP [dm6]	A	G	4.327e^-5	0.727	DOWNSTREAM CR44738 INTERGENIC
2R	19324005	2R_19324005_INS [dm3] 2R_23436482_INS [dm6]	C	CC	4.426e^-5	0.727	INTERGENIC
3R	16763767	3R_16763767_SNP [dm3] 3R_20938045_SNP [dm6]	C	G	4.443e^-5	0.727	INTRON CG31191
2R	16571996	2R_16571996_SNP [dm3] 2R_20684491_SNP [dm6]	A	C	4.487e^-5	0.727	INTERGENIC
3R	2698673	3R_2698673_SNP [dm3] 3R_6872951_SNP [dm6]	G	T	4.525e^-5	0.727	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	12401251	2R_12401251_SNP [dm3] 2R_16513746_SNP [dm6]	C	A	4.535e^-5	0.727	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	23525775	3R_23525775_SNP [dm3] 3R_27700053_SNP [dm6]	T	C	4.543e^-5	0.727	UTR_5_PRIME ALiX UPSTREAM btz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	4.549e^-5	0.727	INTRON nwk
X	8471487	X_8471487_SNP [dm3] X_8577454_SNP [dm6]	G	T	4.638e^-5	0.727	INTRON CG12065
2L	10938670	2L_10938670_SNP [dm3] 2L_10938670_SNP [dm6]	T	C	4.661e^-5	0.727	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10938420	2L_10938420_SNP [dm3] 2L_10938420_SNP [dm6]	A	G	4.721e^-5	0.727	DOWNSTREAM CG14072 INTRON dpr2
3L	16480068	3L_16480068_SNP [dm3] 3L_16486968_SNP [dm6]	G	C	4.794e^-5	0.727	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2L	20563989	2L_20563989_SNP [dm3] 2L_20563989_SNP [dm6]	G	A	4.825e^-5	0.727	INTRON CR45347
2R	8692763	2R_8692763_SNP [dm3] 2R_12805258_SNP [dm6]	T	C	4.830e^-5	0.727	INTERGENIC
2L	22021117	2L_22021117_DEL [dm3] 2L_22021117_DEL [dm6]	AGAA	A	4.833e^-5	0.727	CODON_DELETION tio DOWNSTREAM CR33987	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	4.835e^-5	0.727	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	10931281	2R_10931281_SNP [dm3] 2R_15043776_SNP [dm6]	G	A	4.862e^-5	0.727	INTERGENIC
2R	16543086	2R_16543086_SNP [dm3] 2R_20655581_SNP [dm6]	T	C	4.864e^-5	0.727	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3L	15901216	3L_15901216_SNP [dm3] 3L_15908116_SNP [dm6]	G	A	4.875e^-5	0.727	INTRON sff
2R	20028644	2R_20028644_SNP [dm3] 2R_24141121_SNP [dm6]	C	A	4.942e^-5	0.727	INTRON Dat
3R	25850132	3R_25850132_SNP [dm3] 3R_30024410_SNP [dm6]	A	T	4.984e^-5	0.727	INTRON Axn
3L	9389699	3L_9389699_SNP [dm3] 3L_9396599_SNP [dm6]	G	C	5.056e^-5	0.727	INTRON CG4080
2L	5872774	2L_5872774_SNP [dm3] 2L_5872774_SNP [dm6]	C	A	5.060e^-5	0.727	INTRON rau	TF binding site mE1_TFBS_sens
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	5.073e^-5	0.727	INTRON nwk
3R	5999685	3R_5999685_INS [dm3] 3R_10173963_INS [dm6]	T	TGTGGT	5.079e^-5	0.727	INTRON CG12814
2L	5868835	2L_5868835_SNP [dm3] 2L_5868835_SNP [dm6]	C	T	5.123e^-5	0.728	INTRON rau
2R	13886903	2R_13886903_SNP [dm3] 2R_17999398_SNP [dm6]	A	T	5.252e^-5	0.736	INTRON dpr13
2R	13886902	2R_13886902_SNP [dm3] 2R_17999397_SNP [dm6]	T	G	5.261e^-5	0.736	INTRON dpr13
2L	14361615	2L_14361615_SNP [dm3] 2L_14361615_SNP [dm6]	A	C	5.329e^-5	0.737	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC
3R	25116732	3R_25116732_SNP [dm3] 3R_29291010_SNP [dm6]	A	T	5.387e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5840851	2L_5840851_SNP [dm3] 2L_5840851_SNP [dm6]	G	A	5.404e^-5	0.737	INTRON TrissinR
2R	16939241	2R_16939241_SNP [dm3] 2R_21051736_SNP [dm6]	A	G	5.419e^-5	0.737	SYNONYMOUS_CODING shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10938672	2L_10938672_SNP [dm3] 2L_10938672_SNP [dm6]	C	G	5.536e^-5	0.741	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18496656	2R_18496656_SNP [dm3] 2R_22609151_SNP [dm6]	T	C	5.598e^-5	0.741	SYNONYMOUS_CODING Vps20 DOWNSTREAM CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6124736	2L_6124736_DEL [dm3] 2L_6124736_DEL [dm6]	AATATGGTACA...	A	5.634e^-5	0.741	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	6483372	3L_6483372_SNP [dm3] 3L_6490272_SNP [dm6]	C	A	5.776e^-5	0.741	SYNONYMOUS_CODING CG8270 DOWNSTREAM CG10144
3R	13669182	3R_13669182_SNP [dm3] 3R_17843460_SNP [dm6]	A	G	5.784e^-5	0.741	INTRON tinc
X	8471356	X_8471356_SNP [dm3] X_8577323_SNP [dm6]	A	T	5.802e^-5	0.741	INTRON CG12065
2L	3113632	2L_3113632_SNP [dm3] 2L_3113632_SNP [dm6]	G	A	5.845e^-5	0.741	INTRON toc
3R	19670824	3R_19670824_SNP [dm3] 3R_23845102_SNP [dm6]	T	A	5.933e^-5	0.741	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	26192254	3R_26192254_SNP [dm3] 3R_30366532_SNP [dm6]	G	A	5.990e^-5	0.741	UTR_3_PRIME hdc
X	5425397	X_5425397_SNP [dm3] X_5531364_SNP [dm6]	A	T	5.997e^-5	0.741	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20559655	2L_20559655_SNP [dm3] 2L_20559655_SNP [dm6]	T	C	6.012e^-5	0.741	INTERGENIC
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	6.013e^-5	0.741	INTRON nwk
2R	9509821	2R_9509821_SNP [dm3] 2R_13622316_SNP [dm6]	G	A	6.042e^-5	0.741	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9509828	2R_9509828_SNP [dm3] 2R_13622323_SNP [dm6]	A	T	6.042e^-5	0.741	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	19386244	3L_19386244_SNP [dm3] 3L_19393144_SNP [dm6]	G	T	6.138e^-5	0.741	INTRON CG32206
3L	11213153	3L_11213153_SNP [dm3] 3L_11220053_SNP [dm6]	A	C	6.144e^-5	0.741	INTRON CG42671
2L	9354377	2L_9354377_SNP [dm3] 2L_9354377_SNP [dm6]	A	T	6.175e^-5	0.741	INTERGENIC
3L	13064228	3L_13064228_SNP [dm3] 3L_13071128_SNP [dm6]	T	A	6.240e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	5871678	2L_5871678_SNP [dm3] 2L_5871678_SNP [dm6]	G	A	6.289e^-5	0.741	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	3401806	2R_3401806_SNP [dm3] 2R_7514301_SNP [dm6]	C	T	6.331e^-5	0.741	UTR_3_PRIME CG1603
3R	26855097	3R_26855097_SNP [dm3] 3R_31029375_SNP [dm6]	A	C	6.347e^-5	0.741	INTERGENIC
2L	6950662	2L_6950662_SNP [dm3] 2L_6950662_SNP [dm6]	T	C	6.387e^-5	0.741	UPSTREAM Gas41 INTRON SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10829718	2R_10829718_SNP [dm3] 2R_14942213_SNP [dm6]	T	A	6.462e^-5	0.741	UPSTREAM CG10257 INTERGENIC
3L	13141547	3L_13141547_SNP [dm3] 3L_13148447_SNP [dm6]	G	A	6.481e^-5	0.741	INTERGENIC
2R	17749190	2R_17749190_SNP [dm3] 2R_21861685_SNP [dm6]	G	C	6.500e^-5	0.741	SYNONYMOUS_CODING CG9294
3R	25299660	3R_25299660_SNP [dm3] 3R_29473938_SNP [dm6]	T	G	6.569e^-5	0.741	INTRON Ptp99A
2L	16338461	2L_16338461_SNP [dm3] 2L_16338461_SNP [dm6]	C	T	6.580e^-5	0.741	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3890973	3L_3890973_SNP [dm3] 3L_3890973_SNP [dm6]	A	G	6.627e^-5	0.741	DOWNSTREAM CR45422 INTERGENIC
3R	23256003	3R_23256003_SNP [dm3] 3R_27430281_SNP [dm6]	A	G	6.739e^-5	0.741	INTRON side
3R	4473340	3R_4473340_SNP [dm3] 3R_8647618_SNP [dm6]	G	A	6.749e^-5	0.741	UTR_3_PRIME Mkk4 DOWNSTREAM Mkk4
3R	6330993	3R_6330993_SNP [dm3] 3R_10505271_SNP [dm6]	T	C	6.755e^-5	0.741	INTERGENIC
X	14394066	X_14394066_SNP [dm3] X_14500033_SNP [dm6]	C	T	6.757e^-5	0.741	INTERGENIC
3R	16763804	3R_16763804_SNP [dm3] 3R_20938082_SNP [dm6]	G	T	6.758e^-5	0.741	INTRON CG31191
2R	4284023	2R_4284023_SNP [dm3] 2R_8396518_SNP [dm6]	C	G	6.884e^-5	0.746	UTR_3_PRIME CG2121 DOWNSTREAM pdm3	TF binding site mE1_TFBS_bab1
X	20562878	X_20562878_DEL [dm3] X_20691851_DEL [dm6]	TCGGCCAT	T	6.936e^-5	0.746	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
X	17130159	X_17130159_SNP [dm3] X_17236126_SNP [dm6]	T	A	7.045e^-5	0.746	INTRON f
2R	8609283	2R_8609283_DEL [dm3] 2R_12721778_DEL [dm6]	ATGCAAGTA	A	7.117e^-5	0.746	INTRON CG42663
X	8471517	X_8471517_DEL [dm3] X_8577484_DEL [dm6]	AA	A	7.146e^-5	0.746	INTRON CG12065
3R	5428201	3R_5428201_SNP [dm3] 3R_9602479_SNP [dm6]	C	T	7.151e^-5	0.746	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16338482	2L_16338482_SNP [dm3] 2L_16338482_SNP [dm6]	G	C	7.207e^-5	0.746	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10948722	3R_10948722_SNP [dm3] 3R_15123000_SNP [dm6]	C	T	7.259e^-5	0.746	INTRON CG42788
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	7.270e^-5	0.746	INTRON pHCl
3L	2211054	3L_2211054_SNP [dm3] 3L_2211054_SNP [dm6]	T	A	7.285e^-5	0.746	SYNONYMOUS_CODING CG15878
X	505221	X_505221_DEL [dm3] X_611188_DEL [dm6]	CCCCACGAATACTGCACAAA...	C	7.318e^-5	0.746	UTR_3_PRIME CG13366 INTRON CG13366	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12400591	2R_12400591_SNP [dm3] 2R_16513086_SNP [dm6]	A	G	7.592e^-5	0.746	INTRON Sema-2a
3R	18103722	3R_18103722_SNP [dm3] 3R_22278000_SNP [dm6]	C	G	7.633e^-5	0.746	INTRON SKIP
3R	14431266	3R_14431266_SNP [dm3] 3R_18605544_SNP [dm6]	A	T	7.657e^-5	0.746	INTRON qin & 1 other
2R	20013553	2R_20013553_SNP [dm3] 2R_24126030_SNP [dm6]	G	A	7.698e^-5	0.746	SYNONYMOUS_CODING CG43775 UTR_5_PRIME CG43776 & 1 other UPSTREAM CG43776 & 1 other DOWNSTREAM tamo	TF binding site mE1_TFBS_cad
2R	10829722	2R_10829722_SNP [dm3] 2R_14942217_SNP [dm6]	A	G	7.725e^-5	0.746	UPSTREAM CG10257 INTERGENIC
X	8471420	X_8471420_SNP [dm3] X_8577387_SNP [dm6]	T	A	7.729e^-5	0.746	INTRON CG12065
3L	20830809	3L_20830809_SNP [dm3] 3L_20837709_SNP [dm6]	A	G	7.748e^-5	0.746	UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
3L	1071317	3L_1071317_SNP [dm3] 3L_1071317_SNP [dm6]	G	A	7.758e^-5	0.746	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3R	25659223	3R_25659223_SNP [dm3] 3R_29833501_SNP [dm6]	C	T	7.801e^-5	0.746	UPSTREAM Atg16 INTRON Atg16
3R	25659302	3R_25659302_SNP [dm3] 3R_29833580_SNP [dm6]	A	T	7.801e^-5	0.746	UPSTREAM Atg16 INTRON Atg16
X	14573542	X_14573542_SNP [dm3] X_14679509_SNP [dm6]	C	G	7.866e^-5	0.746	UPSTREAM CG5321 INTERGENIC
3R	14431265	3R_14431265_SNP [dm3] 3R_18605543_SNP [dm6]	T	A	7.959e^-5	0.746	INTRON qin & 1 other
2R	10589127	2R_10589127_INS [dm3] 2R_14701622_INS [dm6]	T	TT	7.959e^-5	0.746	INTRON mspo
2R	19685573	2R_19685573_INS [dm3] 2R_23798050_INS [dm6]	T	TT	7.993e^-5	0.746	UTR_5_PRIME CG9850	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21383500	3R_21383500_SNP [dm3] 3R_25557778_SNP [dm6]	A	T	7.994e^-5	0.746	INTRON msi
2L	5868800	2L_5868800_SNP [dm3] 2L_5868800_SNP [dm6]	T	C	8.039e^-5	0.746	INTRON rau
3L	1915012	3L_1915012_SNP [dm3] 3L_1915012_SNP [dm6]	A	G	8.242e^-5	0.746	INTERGENIC
2L	6950901	2L_6950901_SNP [dm3] 2L_6950901_SNP [dm6]	T	C	8.270e^-5	0.746	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10829726	2R_10829726_SNP [dm3] 2R_14942221_SNP [dm6]	T	A	8.271e^-5	0.746	UPSTREAM CG10257 INTERGENIC
2L	16365430	2L_16365430_SNP [dm3] 2L_16365430_SNP [dm6]	A	G	8.416e^-5	0.746	UPSTREAM jhamt INTERGENIC
2L	3049029	2L_3049029_SNP [dm3] 2L_3049029_SNP [dm6]	T	C	8.418e^-5	0.746	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5841013	2L_5841013_SNP [dm3] 2L_5841013_SNP [dm6]	G	T	8.428e^-5	0.746	INTRON TrissinR
3R	25023505	3R_25023505_SNP [dm3] 3R_29197783_SNP [dm6]	C	T	8.519e^-5	0.746	SYNONYMOUS_CODING CG14515	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16925580	2R_16925580_SNP [dm3] 2R_21038075_SNP [dm6]	C	T	8.597e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5869553	2L_5869553_SNP [dm3] 2L_5869553_SNP [dm6]	C	A	8.605e^-5	0.746	INTRON rau
X	8471345	X_8471345_SNP [dm3] X_8577312_SNP [dm6]	C	T	8.672e^-5	0.746	INTRON CG12065
X	14393645	X_14393645_SNP [dm3] X_14499612_SNP [dm6]	C	A	8.708e^-5	0.746	INTERGENIC
2R	10813840	2R_10813840_SNP [dm3] 2R_14926335_SNP [dm6]	T	C	8.887e^-5	0.746	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5695684	2L_5695684_SNP [dm3] 2L_5695684_SNP [dm6]	C	G	8.908e^-5	0.746	INTERGENIC
2R	13886935	2R_13886935_SNP [dm3] 2R_17999430_SNP [dm6]	C	G	8.917e^-5	0.746	INTRON dpr13
X	18968538	X_18968538_SNP [dm3] X_19074505_SNP [dm6]	A	G	8.927e^-5	0.746	INTERGENIC
2R	12400608	2R_12400608_SNP [dm3] 2R_16513103_SNP [dm6]	G	A	9.016e^-5	0.746	INTRON Sema-2a
3L	15308516	3L_15308516_INS [dm3] 3L_15315416_INS [dm6]	A	AA	9.027e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	15308520	3L_15308520_SNP [dm3] 3L_15315420_SNP [dm6]	A	T	9.027e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	16881379	3L_16881379_SNP [dm3] 3L_16888279_SNP [dm6]	T	C	9.068e^-5	0.746	INTRON Lmpt
2R	16633184	2R_16633184_SNP [dm3] 2R_20745679_SNP [dm6]	G	A	9.070e^-5	0.746	INTRON dpr
2L	10938395	2L_10938395_SNP [dm3] 2L_10938395_SNP [dm6]	A	G	9.123e^-5	0.746	DOWNSTREAM CG14072 INTRON dpr2
3R	5999673	3R_5999673_DEL [dm3] 3R_10173951_DEL [dm6]	ACACA	A	9.153e^-5	0.746	INTRON CG12814
2L	14366958	2L_14366958_SNP [dm3] 2L_14366958_SNP [dm6]	T	G	9.213e^-5	0.746	DOWNSTREAM spel1 INTERGENIC
3L	1071187	3L_1071187_SNP [dm3] 3L_1071187_SNP [dm6]	A	G	9.323e^-5	0.746	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3L	15308770	3L_15308770_SNP [dm3] 3L_15315670_SNP [dm6]	C	A	9.347e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3066390	X_3066390_SNP [dm3] X_3172357_SNP [dm6]	A	T	9.365e^-5	0.746	UTR_3_PRIME CG18508 DOWNSTREAM CG18508 & 1 other
2L	5841258	2L_5841258_SNP [dm3] 2L_5841258_SNP [dm6]	G	A	9.370e^-5	0.746	INTRON TrissinR
2L	21691827	2L_21691827_SNP [dm3] 2L_21691827_SNP [dm6]	G	A	9.383e^-5	0.746	INTRON CG31619
2R	11473312	2R_11473312_SNP [dm3] 2R_15585807_SNP [dm6]	C	A	9.398e^-5	0.746	INTERGENIC
3R	25116733	3R_25116733_SNP [dm3] 3R_29291011_SNP [dm6]	A	G	9.448e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25598423	3R_25598423_SNP [dm3] 3R_29772701_SNP [dm6]	A	C	9.472e^-5	0.746	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25022242	3R_25022242_SNP [dm3] 3R_29196520_SNP [dm6]	A	T	9.480e^-5	0.746	INTERGENIC
X	5061781	X_5061781_SNP [dm3] X_5167748_SNP [dm6]	A	T	9.483e^-5	0.746	INTRON rg & 1 other
3L	18564571	3L_18564571_SNP [dm3] 3L_18571471_SNP [dm6]	T	G	9.611e^-5	0.746	INTRON AstC-R1
2R	11763502	2R_11763502_SNP [dm3] 2R_15875997_SNP [dm6]	C	T	9.613e^-5	0.746	SYNONYMOUS_CODING sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	18906773	2L_18906773_SNP [dm3] 2L_18906773_SNP [dm6]	T	A	9.724e^-5	0.746	DOWNSTREAM CR44738 INTERGENIC
2R	17029070	2R_17029070_SNP [dm3] 2R_21141565_SNP [dm6]	G	A	9.812e^-5	0.746	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	1057043	2L_1057043_SNP [dm3] 2L_1057043_SNP [dm6]	C	G	9.831e^-5	0.746	INTRON S
2R	19674053	2R_19674053_SNP [dm3] 2R_23786530_SNP [dm6]	C	T	9.886e^-5	0.746	INTRON CG9850
X	8471461	X_8471461_SNP [dm3] X_8577428_SNP [dm6]	A	G	9.899e^-5	0.746	INTRON CG12065
2L	5695738	2L_5695738_SNP [dm3] 2L_5695738_SNP [dm6]	A	G	9.914e^-5	0.746	INTERGENIC
2L	5695742	2L_5695742_SNP [dm3] 2L_5695742_SNP [dm6]	T	G	9.914e^-5	0.746	INTERGENIC
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	9.922e^-5	0.746	INTRON nwk
3R	25841778	3R_25841778_SNP [dm3] 3R_30016056_SNP [dm6]	G	A	9.928e^-5	0.746	UTR_3_PRIME Mgat2 UPSTREAM CG7920	TF binding site mE1_TFBS_cad
2L	5695753	2L_5695753_SNP [dm3] 2L_5695753_SNP [dm6]	T	G	9.971e^-5	0.746	INTERGENIC
2L	9726749	2L_9726749_DEL [dm3] 2L_9726749_DEL [dm6]	TTGGT	T	9.994e^-5	0.746	INTRON Nckx30C
2L	18991319	2L_18991319_SNP [dm3] 2L_18991319_SNP [dm6]	A	G	1.000e^-4	0.746	NON_SYNONYMOUS_CODING CG15169	TF binding site mE1_TFBS_sens
3R	25365283	3R_25365283_SNP [dm3] 3R_29539561_SNP [dm6]	A	G	1.001e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5695746	2L_5695746_SNP [dm3] 2L_5695746_SNP [dm6]	G	T	1.003e^-4	0.746	INTERGENIC
2L	5695716	2L_5695716_SNP [dm3] 2L_5695716_SNP [dm6]	C	T	1.006e^-4	0.746	INTERGENIC
3L	19386248	3L_19386248_SNP [dm3] 3L_19393148_SNP [dm6]	A	T	1.006e^-4	0.746	INTRON CG32206
2R	16697763	2R_16697763_DEL [dm3] 2R_20810258_DEL [dm6]	ATGCATCGCAGGACGCGA...	A	1.019e^-4	0.746	INTERGENIC
3R	10954840	3R_10954840_SNP [dm3] 3R_15129118_SNP [dm6]	G	T	1.020e^-4	0.746	INTRON CG42788
2L	10938049	2L_10938049_DEL [dm3] 2L_10938049_DEL [dm6]	TT	T	1.026e^-4	0.746	DOWNSTREAM CG14072 INTRON dpr2
2L	7189376	2L_7189376_SNP [dm3] 2L_7189376_SNP [dm6]	C	A	1.035e^-4	0.746	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
3R	15752704	3R_15752704_SNP [dm3] 3R_19926982_SNP [dm6]	C	T	1.045e^-4	0.746	SYNONYMOUS_CODING CG4459	TF binding site mE1_TFBS_cad
2R	12401249	2R_12401249_SNP [dm3] 2R_16513744_SNP [dm6]	A	G	1.047e^-4	0.746	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25598400	3R_25598400_INS [dm3] 3R_29772678_INS [dm6]	G	GTCTCT	1.051e^-4	0.746	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11763511	2R_11763511_SNP [dm3] 2R_15876006_SNP [dm6]	A	G	1.074e^-4	0.746	SYNONYMOUS_CODING sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	5695759	2L_5695759_SNP [dm3] 2L_5695759_SNP [dm6]	T	A	1.074e^-4	0.746	INTERGENIC
3R	17614327	3R_17614327_SNP [dm3] 3R_21788605_SNP [dm6]	G	T	1.081e^-4	0.746	INTRON CASK
X	9712715	X_9712715_INS [dm3] X_9818682_INS [dm6]	A	AG	1.086e^-4	0.746	INTRON CG32698
2R	18496705	2R_18496705_SNP [dm3] 2R_22609200_SNP [dm6]	C	T	1.094e^-4	0.746	NON_SYNONYMOUS_CODING Vps20 DOWNSTREAM CG4329	TF binding site mE1_TFBS_sens
3R	24944706	3R_24944706_SNP [dm3] 3R_29118984_SNP [dm6]	T	C	1.101e^-4	0.746	SYNONYMOUS_CODING yem DOWNSTREAM Atg14	TF binding site mE1_TFBS_chinmo
3R	23359627	3R_23359627_SNP [dm3] 3R_27533905_SNP [dm6]	T	C	1.102e^-4	0.746	UTR_3_PRIME CG12885	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13970162	2L_13970162_SNP [dm3] 2L_13970162_SNP [dm6]	A	G	1.107e^-4	0.746	UPSTREAM NimB5 & 1 other INTERGENIC
3L	19183034	3L_19183034_SNP [dm3] 3L_19189934_SNP [dm6]	T	A	1.109e^-4	0.746	INTRON fz2	TF binding site BDTNP1_TFBS_da
3L	11422064	3L_11422064_SNP [dm3] 3L_11428964_SNP [dm6]	A	C	1.110e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6124938	2L_6124938_SNP [dm3] 2L_6124938_SNP [dm6]	A	T	1.113e^-4	0.746	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	26808878	3R_26808878_SNP [dm3] 3R_30983156_SNP [dm6]	G	T	1.117e^-4	0.746	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20016162	2R_20016162_SNP [dm3] 2R_24128639_SNP [dm6]	T	A	1.119e^-4	0.746	INTRON tamo	TF binding site mE1_TFBS_chinmo
2L	6124909	2L_6124909_DEL [dm3] 2L_6124909_DEL [dm6]	TC	T	1.120e^-4	0.746	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	20755157	2L_20755157_SNP [dm3] 2L_20755157_SNP [dm6]	G	A	1.130e^-4	0.746	SYNONYMOUS_CODING CG9323 DOWNSTREAM Ns4
2R	6373500	2R_6373500_SNP [dm3] 2R_10485995_SNP [dm6]	G	A	1.131e^-4	0.746	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10823256	3R_10823256_SNP [dm3] 3R_14997534_SNP [dm6]	T	G	1.141e^-4	0.746	INTERGENIC
3R	24955128	3R_24955128_SNP [dm3] 3R_29129406_SNP [dm6]	G	A	1.143e^-4	0.746	SYNONYMOUS_CODING dgt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5695712	2L_5695712_SNP [dm3] 2L_5695712_SNP [dm6]	A	G	1.144e^-4	0.746	INTERGENIC
2R	12400565	2R_12400565_SNP [dm3] 2R_16513060_SNP [dm6]	A	T	1.148e^-4	0.746	INTRON Sema-2a
2R	16686696	2R_16686696_SNP [dm3] 2R_20799191_SNP [dm6]	A	T	1.151e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12595264	2L_12595264_SNP [dm3] 2L_12595264_SNP [dm6]	C	A	1.154e^-4	0.746	INTRON nub
X	16722360	X_16722360_DEL [dm3] X_16828327_DEL [dm6]	CCC	C	1.154e^-4	0.746	UPSTREAM CG13004 INTRON CG13004
2L	6939833	2L_6939833_SNP [dm3] 2L_6939833_SNP [dm6]	G	A	1.161e^-4	0.746	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	12400580	2R_12400580_SNP [dm3] 2R_16513075_SNP [dm6]	G	A	1.166e^-4	0.746	INTRON Sema-2a
3R	22525147	3R_22525147_SNP [dm3] 3R_26699425_SNP [dm6]	T	G	1.170e^-4	0.746	SYNONYMOUS_CODING amon
2R	18490186	2R_18490186_SNP [dm3] 2R_22602681_SNP [dm6]	T	A	1.178e^-4	0.746	INTRON CG4294
2L	5695699	2L_5695699_SNP [dm3] 2L_5695699_SNP [dm6]	A	G	1.183e^-4	0.746	INTERGENIC
2L	8103557	2L_8103557_SNP [dm3] 2L_8103557_SNP [dm6]	A	G	1.183e^-4	0.746	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	13546159	2R_13546159_SNP [dm3] 2R_17658654_SNP [dm6]	C	G	1.188e^-4	0.746	INTRON CCHa1-R
2L	13883576	2L_13883576_SNP [dm3] 2L_13883576_SNP [dm6]	T	C	1.188e^-4	0.746	INTRON CenG1A
3L	15899806	3L_15899806_SNP [dm3] 3L_15906706_SNP [dm6]	G	A	1.193e^-4	0.746	SYNONYMOUS_CODING sff
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	1.197e^-4	0.746	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	9390225	2L_9390225_SNP [dm3] 2L_9390225_SNP [dm6]	C	G	1.200e^-4	0.746	INTRON Shawl & 1 other	TF binding site mE1_TFBS_chinmo
2L	6229836	2L_6229836_SNP [dm3] 2L_6229836_SNP [dm6]	C	T	1.209e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13010421	3R_13010421_DEL [dm3] 3R_17184699_DEL [dm6]	TT	T	1.212e^-4	0.746	INTRON Mur89F
2R	16543135	2R_16543135_DEL [dm3] 2R_20655630_DEL [dm6]	CAAAGGTGTTTGTTT...	C	1.214e^-4	0.746	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3L	15889744	3L_15889744_SNP [dm3] 3L_15896644_SNP [dm6]	G	T	1.220e^-4	0.746	INTRON pHCl
2L	10196179	2L_10196179_SNP [dm3] 2L_10196179_SNP [dm6]	A	C	1.223e^-4	0.746	INTRON Sur
3R	14430832	3R_14430832_SNP [dm3] 3R_18605110_SNP [dm6]	G	C	1.225e^-4	0.746	INTRON qin & 1 other
3R	25025473	3R_25025473_SNP [dm3] 3R_29199751_SNP [dm6]	C	T	1.226e^-4	0.746	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16763618	3R_16763618_SNP [dm3] 3R_20937896_SNP [dm6]	T	A	1.227e^-4	0.746	INTRON CG31191
3L	4483067	3L_4483067_SNP [dm3] 3L_4483067_SNP [dm6]	C	G	1.234e^-4	0.746	SYNONYMOUS_CODING CG11350
2L	3113702	2L_3113702_SNP [dm3] 2L_3113702_SNP [dm6]	C	G	1.236e^-4	0.746	INTRON toc
2L	10938544	2L_10938544_SNP [dm3] 2L_10938544_SNP [dm6]	A	C	1.245e^-4	0.746	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
X	19190347	X_19190347_SNP [dm3] X_19296314_SNP [dm6]	C	G	1.249e^-4	0.746	INTRON CG8034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5840847	2L_5840847_SNP [dm3] 2L_5840847_SNP [dm6]	C	A	1.254e^-4	0.746	INTRON TrissinR
3R	723194	3R_723194_SNP [dm3] 3R_4897472_SNP [dm6]	A	G	1.257e^-4	0.746	DOWNSTREAM CR45580 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	16731335	3L_16731335_SNP [dm3] 3L_16738235_SNP [dm6]	C	T	1.260e^-4	0.746	INTRON CG9701
X	14814936	X_14814936_SNP [dm3] X_14920903_SNP [dm6]	T	G	1.263e^-4	0.746	SYNONYMOUS_CODING CG9503 INTRON Flo2
3R	26386046	3R_26386046_SNP [dm3] 3R_30560324_SNP [dm6]	C	G	1.264e^-4	0.746	UPSTREAM CG34155 INTRON tmod	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12636854	2R_12636854_SNP [dm3] 2R_16749349_SNP [dm6]	A	T	1.273e^-4	0.746	UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea INTRON Acp53C14b
3R	24946607	3R_24946607_SNP [dm3] 3R_29120885_SNP [dm6]	G	A	1.276e^-4	0.746	SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
3R	26897523	3R_26897523_SNP [dm3] 3R_31071801_SNP [dm6]	A	T	1.277e^-4	0.746	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2R	11769757	2R_11769757_SNP [dm3] 2R_15882252_SNP [dm6]	G	T	1.279e^-4	0.746	INTRON sli
3R	16104897	3R_16104897_SNP [dm3] 3R_20279175_SNP [dm6]	A	G	1.281e^-4	0.746	INTRON cic
3R	14428237	3R_14428237_SNP [dm3] 3R_18602515_SNP [dm6]	G	A	1.283e^-4	0.746	INTRON qin & 1 other
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	1.287e^-4	0.746	INTERGENIC
3L	4127811	3L_4127811_SNP [dm3] 3L_4127811_SNP [dm6]	G	A	1.292e^-4	0.746	INTRON ens
2L	13993218	2L_13993218_SNP [dm3] 2L_13993218_SNP [dm6]	A	G	1.308e^-4	0.746	SYNONYMOUS_CODING rk
3R	22035532	3R_22035532_SNP [dm3] 3R_26209810_SNP [dm6]	C	T	1.308e^-4	0.746	INTRON CR44320
2R	20021221	2R_20021221_DEL [dm3] 2R_24133698_DEL [dm6]	TAA	T	1.312e^-4	0.746	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19182974	3L_19182974_SNP [dm3] 3L_19189874_SNP [dm6]	C	T	1.315e^-4	0.746	INTRON fz2
3R	25025508	3R_25025508_SNP [dm3] 3R_29199786_SNP [dm6]	G	A	1.318e^-4	0.746	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16543053	2R_16543053_INS [dm3] 2R_20655548_INS [dm6]	G	TTT	1.324e^-4	0.746	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3R	10955560	3R_10955560_SNP [dm3] 3R_15129838_SNP [dm6]	A	G	1.329e^-4	0.746	DOWNSTREAM mir-2493 INTRON CG42788
X	4525268	X_4525268_SNP [dm3] X_4631235_SNP [dm6]	G	T	1.330e^-4	0.746	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2L	16340521	2L_16340521_SNP [dm3] 2L_16340521_SNP [dm6]	A	G	1.332e^-4	0.746	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26668110	3R_26668110_SNP [dm3] 3R_30842388_SNP [dm6]	G	T	1.337e^-4	0.746	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3L	4082346	3L_4082346_DEL [dm3] 3L_4082346_DEL [dm6]	GGGATTCAATAG...	G	1.338e^-4	0.746	INTRON Gad1
3L	11208532	3L_11208532_SNP [dm3] 3L_11215432_SNP [dm6]	A	T	1.343e^-4	0.746	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16543034	2R_16543034_SNP [dm3] 2R_20655529_SNP [dm6]	T	A	1.349e^-4	0.746	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3R	24950044	3R_24950044_SNP [dm3] 3R_29124322_SNP [dm6]	A	T	1.351e^-4	0.746	INTRON CG11880	TF binding site mE1_TFBS_h mE1_TFBS_sens
3R	25365535	3R_25365535_SNP [dm3] 3R_29539813_SNP [dm6]	A	G	1.356e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12765207	2L_12765207_SNP [dm3] 2L_12765207_SNP [dm6]	G	A	1.357e^-4	0.746	INTERGENIC
2L	10096041	2L_10096041_SNP [dm3] 2L_10096041_SNP [dm6]	C	T	1.358e^-4	0.746	INTRON CG44153 & 1 other
2L	21970641	2L_21970641_SNP [dm3] 2L_21970641_SNP [dm6]	C	G	1.371e^-4	0.746	INTERGENIC
X	8813199	X_8813199_INS [dm3] X_8919166_INS [dm6]	G	GAG	1.372e^-4	0.746	DOWNSTREAM CR44111 INTRON rdgA
3R	17731411	3R_17731411_SNP [dm3] 3R_21905689_SNP [dm6]	C	G	1.374e^-4	0.746	INTRON CG6678	TF binding site mE1_TFBS_chinmo
3L	2723287	3L_2723287_SNP [dm3] 3L_2723287_SNP [dm6]	G	A	1.375e^-4	0.746	NON_SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16099146	3R_16099146_SNP [dm3] 3R_20273424_SNP [dm6]	T	C	1.376e^-4	0.746	INTRON cic
3R	9964641	3R_9964641_SNP [dm3] 3R_14138919_SNP [dm6]	G	A	1.383e^-4	0.746	INTERGENIC
2R	10806918	2R_10806918_SNP [dm3] 2R_14919413_SNP [dm6]	T	C	1.390e^-4	0.746	INTRON CG10249	TF binding site mE1_TFBS_cnc
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	1.395e^-4	0.746	INTRON nwk
2R	16543049	2R_16543049_SNP [dm3] 2R_20655544_SNP [dm6]	C	A	1.396e^-4	0.746	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
2L	16340523	2L_16340523_SNP [dm3] 2L_16340523_SNP [dm6]	C	T	1.398e^-4	0.746	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17500776	2L_17500776_SNP [dm3] 2L_17500776_SNP [dm6]	G	A	1.402e^-4	0.746	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23191910	3R_23191910_SNP [dm3] 3R_27366188_SNP [dm6]	C	G	1.405e^-4	0.746	DOWNSTREAM CR43476 INTRON CG42534
3L	10886777	3L_10886777_SNP [dm3] 3L_10893677_SNP [dm6]	C	T	1.405e^-4	0.746	UPSTREAM Cpr67Fb EXON CR45171
2L	1093884	2L_1093884_SNP [dm3] 2L_1093884_SNP [dm6]	C	G	1.405e^-4	0.746	INTRON CG4629
2R	17749530	2R_17749530_SNP [dm3] 2R_21862025_SNP [dm6]	G	C	1.415e^-4	0.746	DOWNSTREAM CG9294 INTERGENIC
2R	8835349	2R_8835349_SNP [dm3] 2R_12947844_SNP [dm6]	T	C	1.428e^-4	0.746	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25598024	3R_25598024_SNP [dm3] 3R_29772302_SNP [dm6]	A	T	1.431e^-4	0.746	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23028608	3R_23028608_SNP [dm3] 3R_27202886_SNP [dm6]	G	T	1.431e^-4	0.746	INTERGENIC	regulatory region REDfly_CRMs
3R	10966565	3R_10966565_SNP [dm3] 3R_15140843_SNP [dm6]	A	G	1.431e^-4	0.746	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13206593	2R_13206593_SNP [dm3] 2R_17319088_SNP [dm6]	G	A	1.436e^-4	0.746	INTRON mbl
3L	680550	3L_680550_DEL [dm3] 3L_680550_DEL [dm6]	TAT	T	1.440e^-4	0.746	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	21970644	2L_21970644_SNP [dm3] 2L_21970644_SNP [dm6]	A	G	1.440e^-4	0.746	INTERGENIC
3R	17933528	3R_17933528_SNP [dm3] 3R_22107806_SNP [dm6]	C	T	1.444e^-4	0.746	INTRON CG5778
2R	16543042	2R_16543042_SNP [dm3] 2R_20655537_SNP [dm6]	G	C	1.448e^-4	0.746	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3R	16858938	3R_16858938_SNP [dm3] 3R_21033216_SNP [dm6]	T	C	1.448e^-4	0.746	SYNONYMOUS_CODING Dhc93AB
2L	16367334	2L_16367334_SNP [dm3] 2L_16367334_SNP [dm6]	G	C	1.452e^-4	0.746	DOWNSTREAM jhamt INTERGENIC
2R	3314614	2R_3314614_SNP [dm3] 2R_7427109_SNP [dm6]	A	C	1.468e^-4	0.746	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6275262	2L_6275262_SNP [dm3] 2L_6275262_SNP [dm6]	G	A	1.471e^-4	0.746	INTRON Ddr
3R	14437902	3R_14437902_SNP [dm3] 3R_18612180_SNP [dm6]	A	G	1.471e^-4	0.746	INTRON qin & 1 other
3R	720844	3R_720844_SNP [dm3] 3R_4895122_SNP [dm6]	T	C	1.473e^-4	0.746	INTERGENIC
3R	24954576	3R_24954576_SNP [dm3] 3R_29128854_SNP [dm6]	G	A	1.476e^-4	0.746	SYNONYMOUS_CODING dgt6 DOWNSTREAM CG11880	TF binding site mE1_TFBS_cad
X	14814333	X_14814333_SNP [dm3] X_14920300_SNP [dm6]	G	T	1.479e^-4	0.746	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
3R	15949096	3R_15949096_SNP [dm3] 3R_20123374_SNP [dm6]	C	T	1.482e^-4	0.746	INTERGENIC
2R	12400600	2R_12400600_SNP [dm3] 2R_16513095_SNP [dm6]	C	T	1.496e^-4	0.746	INTRON Sema-2a
2R	17749592	2R_17749592_DEL [dm3] 2R_21862087_DEL [dm6]	TT	T	1.498e^-4	0.746	DOWNSTREAM CG9294 INTERGENIC
3R	10954764	3R_10954764_SNP [dm3] 3R_15129042_SNP [dm6]	C	T	1.500e^-4	0.746	INTRON CG42788
2L	15598687	2L_15598687_SNP [dm3] 2L_15598687_SNP [dm6]	T	A	1.501e^-4	0.746	INTERGENIC
2L	9651818	2L_9651818_SNP [dm3] 2L_9651818_SNP [dm6]	G	C	1.501e^-4	0.746	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10815229	2R_10815229_SNP [dm3] 2R_14927724_SNP [dm6]	A	T	1.503e^-4	0.746	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6968492	3R_6968492_SNP [dm3] 3R_11142770_SNP [dm6]	T	A	1.514e^-4	0.746	INTERGENIC
2L	5695756	2L_5695756_SNP [dm3] 2L_5695756_SNP [dm6]	A	G	1.517e^-4	0.746	INTERGENIC
2L	8400857	2L_8400857_SNP [dm3] 2L_8400857_SNP [dm6]	C	A	1.520e^-4	0.746	NON_SYNONYMOUS_CODING CG31898 DOWNSTREAM CG13386 & 1 other	TF binding site mE1_TFBS_HSA
3L	4855161	3L_4855161_SNP [dm3] 3L_4855161_SNP [dm6]	C	G	1.520e^-4	0.746	INTERGENIC
X	17149709	X_17149709_SNP [dm3] X_17255676_SNP [dm6]	T	C	1.521e^-4	0.746	INTRON f
3R	26418491	3R_26418491_SNP [dm3] 3R_30592769_SNP [dm6]	A	G	1.522e^-4	0.746	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3048886	2L_3048886_DEL [dm3] 2L_3048886_DEL [dm6]	TCTT	T	1.522e^-4	0.746	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10829658	2R_10829658_SNP [dm3] 2R_14942153_SNP [dm6]	G	T	1.526e^-4	0.746	UPSTREAM CG10257 INTERGENIC
2R	16542904	2R_16542904_SNP [dm3] 2R_20655399_SNP [dm6]	A	G	1.529e^-4	0.746	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
X	6429961	X_6429961_SNP [dm3] X_6535928_SNP [dm6]	A	G	1.530e^-4	0.746	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3113706	2L_3113706_SNP [dm3] 2L_3113706_SNP [dm6]	C	T	1.533e^-4	0.746	INTRON toc
3L	16958318	3L_16958318_SNP [dm3] 3L_16965218_SNP [dm6]	G	C	1.538e^-4	0.746	INTRON Nc73EF
2L	2510625	2L_2510625_SNP [dm3] 2L_2510625_SNP [dm6]	T	C	1.538e^-4	0.746	INTERGENIC
3R	21055829	3R_21055829_SNP [dm3] 3R_25230107_SNP [dm6]	T	G	1.555e^-4	0.746	INTRON Cad96Cb
X	16722353	X_16722353_SNP [dm3] X_16828320_SNP [dm6]	T	A	1.557e^-4	0.746	UPSTREAM CG13004 INTRON CG13004
2L	3113693	2L_3113693_SNP [dm3] 2L_3113693_SNP [dm6]	A	G	1.567e^-4	0.746	INTRON toc
2R	18500392	2R_18500392_SNP [dm3] 2R_22612887_SNP [dm6]	G	A	1.570e^-4	0.746	SYNONYMOUS_CODING CG4329
2L	10938554	2L_10938554_SNP [dm3] 2L_10938554_SNP [dm6]	T	C	1.571e^-4	0.746	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2L	21999223	2L_21999223_SNP [dm3] 2L_21999223_SNP [dm6]	T	A	1.571e^-4	0.746	DOWNSTREAM CR44916 INTERGENIC
2L	5862701	2L_5862701_SNP [dm3] 2L_5862701_SNP [dm6]	C	A	1.574e^-4	0.746	INTRON rau
2L	13500531	2L_13500531_SNP [dm3] 2L_13500531_SNP [dm6]	T	G	1.580e^-4	0.746	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	8471344	X_8471344_SNP [dm3] X_8577311_SNP [dm6]	G	A	1.582e^-4	0.746	INTRON CG12065
3L	18562634	3L_18562634_SNP [dm3] 3L_18569534_SNP [dm6]	T	G	1.589e^-4	0.746	INTRON AstC-R1
X	4111312	X_4111312_SNP [dm3] X_4217279_SNP [dm6]	T	C	1.590e^-4	0.746	SYNONYMOUS_CODING CG15571 UPSTREAM CG15570
2L	17817855	2L_17817855_SNP [dm3] 2L_17817855_SNP [dm6]	A	G	1.595e^-4	0.746	INTRON CadN2
2L	5841296	2L_5841296_SNP [dm3] 2L_5841296_SNP [dm6]	G	A	1.595e^-4	0.746	INTRON TrissinR
2R	17749619	2R_17749619_SNP [dm3] 2R_21862114_SNP [dm6]	A	T	1.595e^-4	0.746	DOWNSTREAM CG9294 INTERGENIC
3R	26668124	3R_26668124_SNP [dm3] 3R_30842402_SNP [dm6]	G	T	1.598e^-4	0.746	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10955504	3R_10955504_SNP [dm3] 3R_15129782_SNP [dm6]	G	A	1.603e^-4	0.746	DOWNSTREAM mir-2493 INTRON CG42788
2L	3571802	2L_3571802_SNP [dm3] 2L_3571802_SNP [dm6]	C	T	1.607e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8103659	2L_8103659_SNP [dm3] 2L_8103659_SNP [dm6]	A	T	1.608e^-4	0.746	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	6393865	3R_6393865_SNP [dm3] 3R_10568143_SNP [dm6]	C	A	1.612e^-4	0.746	INTRON hth	TF binding site mE1_TFBS_cnc
3R	25023139	3R_25023139_SNP [dm3] 3R_29197417_SNP [dm6]	C	A	1.615e^-4	0.746	UPSTREAM CG14515 INTERGENIC
2R	16686793	2R_16686793_DEL [dm3] 2R_20799288_DEL [dm6]	TAAAACCATTTAGGGCAGGT...	T	1.620e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25175919	3R_25175919_SNP [dm3] 3R_29350197_SNP [dm6]	T	A	1.622e^-4	0.746	INTERGENIC
3R	20772884	3R_20772884_SNP [dm3] 3R_24947162_SNP [dm6]	T	C	1.630e^-4	0.746	SPLICE_SITE_REGION Nmnat UPSTREAM CG13646 DOWNSTREAM Nmnat INTRON Nmnat	TF binding site mE1_TFBS_chinmo
3R	24950041	3R_24950041_SNP [dm3] 3R_29124319_SNP [dm6]	T	C	1.632e^-4	0.746	INTRON CG11880	TF binding site mE1_TFBS_h mE1_TFBS_sens
3R	24950043	3R_24950043_SNP [dm3] 3R_29124321_SNP [dm6]	C	T	1.632e^-4	0.746	INTRON CG11880	TF binding site mE1_TFBS_h mE1_TFBS_sens
3L	680659	3L_680659_INS [dm3] 3L_680659_INS [dm6]	T	TCTGTTTAGTTTAGTACACT...	1.633e^-4	0.746	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	21998986	2L_21998986_SNP [dm3] 2L_21998986_SNP [dm6]	G	A	1.636e^-4	0.746	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	1.641e^-4	0.746	INTRON Gfrl
3R	25009814	3R_25009814_SNP [dm3] 3R_29184092_SNP [dm6]	C	T	1.642e^-4	0.746	INTRON CG14509
2R	12401501	2R_12401501_SNP [dm3] 2R_16513996_SNP [dm6]	C	T	1.656e^-4	0.75	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12036550	3L_12036550_SNP [dm3] 3L_12043450_SNP [dm6]	G	A	1.664e^-4	0.75	NON_SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	9677371	3L_9677371_SNP [dm3] 3L_9684271_SNP [dm6]	T	G	1.667e^-4	0.75	UTR_3_PRIME CG6767 UPSTREAM CG16719 DOWNSTREAM alphaTub67C
3R	660111	3R_660111_SNP [dm3] 3R_4834389_SNP [dm6]	A	C	1.675e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5841744	2L_5841744_SNP [dm3] 2L_5841744_SNP [dm6]	T	C	1.686e^-4	0.75	INTRON TrissinR
2L	14366784	2L_14366784_SNP [dm3] 2L_14366784_SNP [dm6]	C	A	1.700e^-4	0.75	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
2R	4071968	2R_4071968_SNP [dm3] 2R_8184463_SNP [dm6]	A	G	1.702e^-4	0.75	INTRON LRP1
3R	26757259	3R_26757259_SNP [dm3] 3R_30931537_SNP [dm6]	A	G	1.702e^-4	0.75	DOWNSTREAM Ptx1 INTERGENIC
2L	21992599	2L_21992599_SNP [dm3] 2L_21992599_SNP [dm6]	A	T	1.702e^-4	0.75	NON_SYNONYMOUS_CODING CG2528
2R	12401278	2R_12401278_SNP [dm3] 2R_16513773_SNP [dm6]	T	C	1.703e^-4	0.75	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	17749525	2R_17749525_INS [dm3] 2R_21862020_INS [dm6]	A	AA	1.706e^-4	0.75	DOWNSTREAM CG9294 INTERGENIC
2L	4137420	2L_4137420_SNP [dm3] 2L_4137420_SNP [dm6]	T	A	1.712e^-4	0.75	INTERGENIC
3R	24954360	3R_24954360_DEL [dm3] 3R_29128638_DEL [dm6]	AAAAAGTA	A	1.713e^-4	0.75	UTR_3_PRIME dgt6 DOWNSTREAM CG11880
2R	10849488	2R_10849488_INS [dm3] 2R_14961983_INS [dm6]	A	ATTTTTTAGTGCTCGAGTTA...	1.714e^-4	0.75	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	14584450	3L_14584450_SNP [dm3] 3L_14591350_SNP [dm6]	G	C	1.723e^-4	0.75	INTRON HGTX
2L	5872903	2L_5872903_SNP [dm3] 2L_5872903_SNP [dm6]	T	G	1.723e^-4	0.75	INTRON rau	TF binding site mE1_TFBS_sens
3R	24605408	3R_24605408_DEL [dm3] 3R_28779686_DEL [dm6]	CT	A	1.726e^-4	0.75	INTERGENIC
3L	11313899	3L_11313899_SNP [dm3] 3L_11320799_SNP [dm6]	T	C	1.732e^-4	0.75	SYNONYMOUS_CODING CG6168
3R	10841133	3R_10841133_SNP [dm3] 3R_15015411_SNP [dm6]	G	T	1.737e^-4	0.75	SYNONYMOUS_CODING CG14861
3R	805735	3R_805735_DEL [dm3] 3R_4980013_DEL [dm6]	TT	T	1.738e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	7088979	X_7088979_DEL [dm3] X_7194946_DEL [dm6]	GG	G	1.742e^-4	0.75	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26460536	3R_26460536_SNP [dm3] 3R_30634814_SNP [dm6]	T	C	1.743e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12179419	2L_12179419_SNP [dm3] 2L_12179419_SNP [dm6]	C	T	1.748e^-4	0.75	INTRON aret
2L	13268622	2L_13268622_SNP [dm3] 2L_13268622_SNP [dm6]	A	G	1.756e^-4	0.75	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
2L	7189365	2L_7189365_SNP [dm3] 2L_7189365_SNP [dm6]	A	T	1.763e^-4	0.75	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
2R	3314627	2R_3314627_SNP [dm3] 2R_7427122_SNP [dm6]	G	T	1.766e^-4	0.75	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16702203	2R_16702203_SNP [dm3] 2R_20814698_SNP [dm6]	T	C	1.767e^-4	0.75	INTERGENIC
2R	18490195	2R_18490195_SNP [dm3] 2R_22602690_SNP [dm6]	A	G	1.776e^-4	0.75	INTRON CG4294
2R	15318353	2R_15318353_SNP [dm3] 2R_19430848_SNP [dm6]	A	T	1.781e^-4	0.75	UTR_3_PRIME Fak DOWNSTREAM CalpA
2R	12636874	2R_12636874_SNP [dm3] 2R_16749369_SNP [dm6]	A	T	1.781e^-4	0.75	UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea INTRON Acp53C14b
2R	10806379	2R_10806379_SNP [dm3] 2R_14918874_SNP [dm6]	C	G	1.786e^-4	0.75	INTRON CG10249
3R	25455931	3R_25455931_SNP [dm3] 3R_29630209_SNP [dm6]	C	T	1.787e^-4	0.75	DOWNSTREAM Dop1R2 INTERGENIC
3R	13351170	3R_13351170_SNP [dm3] 3R_17525448_SNP [dm6]	C	A	1.790e^-4	0.75	INTERGENIC
2R	6373635	2R_6373635_SNP [dm3] 2R_10486130_SNP [dm6]	G	T	1.792e^-4	0.75	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3055451	2L_3055451_SNP [dm3] 2L_3055451_SNP [dm6]	A	G	1.804e^-4	0.75	SYNONYMOUS_CODING v_2_k05816	TF binding site BDTNP1_TFBS_dl
2L	22020877	2L_22020877_SNP [dm3] 2L_22020877_SNP [dm6]	C	T	1.804e^-4	0.75	SYNONYMOUS_CODING tio DOWNSTREAM CR33987	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14322156	2R_14322156_SNP [dm3] 2R_18434651_SNP [dm6]	A	T	1.804e^-4	0.75	INTRON CG30118
2L	6124821	2L_6124821_SNP [dm3] 2L_6124821_SNP [dm6]	G	A	1.805e^-4	0.75	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	8835074	2R_8835074_SNP [dm3] 2R_12947569_SNP [dm6]	G	T	1.811e^-4	0.751	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10576643	2L_10576643_SNP [dm3] 2L_10576643_SNP [dm6]	G	A	1.816e^-4	0.751	NON_SYNONYMOUS_CODING w-cup INTRON Trim9
2L	13924240	2L_13924240_SNP [dm3] 2L_13924240_SNP [dm6]	A	G	1.819e^-4	0.751	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22987378	3R_22987378_SNP [dm3] 3R_27161656_SNP [dm6]	C	A	1.822e^-4	0.751	INTRON CG5909
3R	23256058	3R_23256058_SNP [dm3] 3R_27430336_SNP [dm6]	G	T	1.825e^-4	0.751	INTRON side
2L	13881143	2L_13881143_SNP [dm3] 2L_13881143_SNP [dm6]	G	A	1.840e^-4	0.752	INTRON CenG1A
2L	20801137	2L_20801137_SNP [dm3] 2L_20801137_SNP [dm6]	C	A	1.842e^-4	0.752	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	14437910	3R_14437910_SNP [dm3] 3R_18612188_SNP [dm6]	C	G	1.845e^-4	0.752	INTRON qin & 1 other
3R	6976528	3R_6976528_SNP [dm3] 3R_11150806_SNP [dm6]	T	G	1.848e^-4	0.752	DOWNSTREAM Ugt86Di INTERGENIC
2R	12401227	2R_12401227_SNP [dm3] 2R_16513722_SNP [dm6]	A	G	1.849e^-4	0.752	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	9929685	X_9929685_SNP [dm3] X_10035652_SNP [dm6]	C	A	1.864e^-4	0.752	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14502085	X_14502085_SNP [dm3] X_14608052_SNP [dm6]	A	G	1.864e^-4	0.752	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2L	6618387	2L_6618387_SNP [dm3] 2L_6618387_SNP [dm6]	G	A	1.865e^-4	0.752	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
2L	13500544	2L_13500544_DEL [dm3] 2L_13500544_DEL [dm6]	GCTAATGGTTCGAACGG...	G	1.869e^-4	0.752	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6825102	2R_6825102_SNP [dm3] 2R_10937597_SNP [dm6]	T	A	1.873e^-4	0.752	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1819210	2L_1819210_SNP [dm3] 2L_1819210_SNP [dm6]	G	A	1.880e^-4	0.752	INTERGENIC
2R	14935942	2R_14935942_SNP [dm3] 2R_19048437_SNP [dm6]	A	C	1.888e^-4	0.752	INTERGENIC
2L	1022567	2L_1022567_SNP [dm3] 2L_1022567_SNP [dm6]	G	A	1.889e^-4	0.752	INTRON IA-2
X	12602878	X_12602878_SNP [dm3] X_12708845_SNP [dm6]	A	T	1.894e^-4	0.752	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16668379	2R_16668379_SNP [dm3] 2R_20780874_SNP [dm6]	A	G	1.895e^-4	0.752	UPSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
2L	10938709	2L_10938709_SNP [dm3] 2L_10938709_SNP [dm6]	C	T	1.896e^-4	0.752	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15393934	3R_15393934_SNP [dm3] 3R_19568212_SNP [dm6]	A	G	1.896e^-4	0.752	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
2R	13087610	2R_13087610_INS [dm3] 2R_17200105_INS [dm6]	T	TGACTGT	1.900e^-4	0.752	INTERGENIC
2L	17177609	2L_17177609_SNP [dm3] 2L_17177609_SNP [dm6]	G	T	1.906e^-4	0.752	SYNONYMOUS_CODING Gr36a
3R	10419188	3R_10419188_SNP [dm3] 3R_14593466_SNP [dm6]	A	G	1.911e^-4	0.752	INTRON stumps
2L	3025682	2L_3025682_SNP [dm3] 2L_3025682_SNP [dm6]	C	T	1.913e^-4	0.752	SPLICE_SITE_REGION CG3542 DOWNSTREAM CG3605 INTRON CG3542
2R	4065875	2R_4065875_SNP [dm3] 2R_8178370_SNP [dm6]	G	A	1.916e^-4	0.752	INTRON LRP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7454871	2R_7454871_SNP [dm3] 2R_11567366_SNP [dm6]	G	A	1.920e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2L	2441231	2L_2441231_SNP [dm3] 2L_2441231_SNP [dm6]	A	G	1.924e^-4	0.752	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21892943	X_21892943_SNP [dm3] X_22491107_SNP [dm6]	T	A	1.931e^-4	0.752	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
2R	6825104	2R_6825104_SNP [dm3] 2R_10937599_SNP [dm6]	T	C	1.937e^-4	0.752	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8687208	2R_8687208_SNP [dm3] 2R_12799703_SNP [dm6]	T	G	1.942e^-4	0.752	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad
3L	3486348	3L_3486348_SNP [dm3] 3L_3486348_SNP [dm6]	C	A	1.943e^-4	0.752	INTRON CG42324
3L	17165888	3L_17165888_SNP [dm3] 3L_17172788_SNP [dm6]	G	C	1.947e^-4	0.752	INTRON Rbp6
3R	25277545	3R_25277545_SNP [dm3] 3R_29451823_SNP [dm6]	C	G	1.948e^-4	0.752	INTRON Ptp99A
3R	12998444	3R_12998444_SNP [dm3] 3R_17172722_SNP [dm6]	C	T	1.952e^-4	0.752	INTRON Mur89F
2R	9228307	2R_9228307_SNP [dm3] 2R_13340802_SNP [dm6]	T	C	1.958e^-4	0.753	INTRON CR44206	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14059374	2R_14059374_SNP [dm3] 2R_18171869_SNP [dm6]	T	C	1.976e^-4	0.753	UPSTREAM Dgp-1 INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	20572676	X_20572676_SNP [dm3] X_20701649_SNP [dm6]	G	C	1.977e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs
2R	8836458	2R_8836458_SNP [dm3] 2R_12948953_SNP [dm6]	G	T	1.985e^-4	0.753	NON_SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13167821	2R_13167821_INS [dm3] 2R_17280316_INS [dm6]	A	ATAAA	1.986e^-4	0.753	INTRON mbl
3L	1326592	3L_1326592_SNP [dm3] 3L_1326592_SNP [dm6]	A	G	1.989e^-4	0.753	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8683906	2L_8683906_SNP [dm3] 2L_8683906_SNP [dm6]	C	G	1.993e^-4	0.753	UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other INTRON CG9289
2R	17753063	2R_17753063_SNP [dm3] 2R_21865558_SNP [dm6]	C	T	1.997e^-4	0.753	SYNONYMOUS_CODING comr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10818643	2R_10818643_SNP [dm3] 2R_14931138_SNP [dm6]	C	T	1.999e^-4	0.753	INTRON CG10253
3R	15752665	3R_15752665_SNP [dm3] 3R_19926943_SNP [dm6]	A	G	2.000e^-4	0.753	SYNONYMOUS_CODING CG4459	TF binding site mE1_TFBS_cad
2R	4069126	2R_4069126_SNP [dm3] 2R_8181621_SNP [dm6]	T	G	2.000e^-4	0.753	INTRON LRP1
2L	18888587	2L_18888587_SNP [dm3] 2L_18888587_SNP [dm6]	G	T	2.012e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	3049020	2L_3049020_SNP [dm3] 2L_3049020_SNP [dm6]	C	A	2.015e^-4	0.755	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12400501	2R_12400501_SNP [dm3] 2R_16512996_SNP [dm6]	C	A	2.016e^-4	0.755	INTRON Sema-2a
2L	19080048	2L_19080048_INS [dm3] 2L_19080048_INS [dm6]	C	CGGTTTC	2.024e^-4	0.755	UTR_3_PRIME Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25455944	3R_25455944_SNP [dm3] 3R_29630222_SNP [dm6]	G	T	2.027e^-4	0.755	DOWNSTREAM Dop1R2 INTERGENIC
3L	11313894	3L_11313894_SNP [dm3] 3L_11320794_SNP [dm6]	A	C	2.030e^-4	0.755	NON_SYNONYMOUS_CODING CG6168
3R	16858968	3R_16858968_SNP [dm3] 3R_21033246_SNP [dm6]	A	G	2.049e^-4	0.758	SYNONYMOUS_CODING Dhc93AB
2L	3026018	2L_3026018_SNP [dm3] 2L_3026018_SNP [dm6]	T	G	2.061e^-4	0.758	NON_SYNONYMOUS_CODING CG3542 DOWNSTREAM CG3605
2L	2653854	2L_2653854_SNP [dm3] 2L_2653854_SNP [dm6]	G	A	2.062e^-4	0.758	UTR_3_PRIME Prosbeta4R1 UPSTREAM Or23a
3R	18103176	3R_18103176_SNP [dm3] 3R_22277454_SNP [dm6]	C	A	2.062e^-4	0.758	INTRON SKIP
2R	14935819	2R_14935819_SNP [dm3] 2R_19048314_SNP [dm6]	T	G	2.072e^-4	0.758	INTERGENIC
2R	16686731	2R_16686731_SNP [dm3] 2R_20799226_SNP [dm6]	A	T	2.072e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5841137	2L_5841137_SNP [dm3] 2L_5841137_SNP [dm6]	A	C	2.080e^-4	0.758	INTRON TrissinR
X	2095202	X_2095202_SNP [dm3] X_2201169_SNP [dm6]	A	G	2.087e^-4	0.758	DOWNSTREAM CG18031 INTRON Mct1 EXON CR43637	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	10231875	2L_10231875_SNP [dm3] 2L_10231875_SNP [dm6]	C	G	2.087e^-4	0.758	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl mE1_TFBS_Ubx
X	7088963	X_7088963_SNP [dm3] X_7194930_SNP [dm6]	G	A	2.096e^-4	0.758	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3066361	X_3066361_SNP [dm3] X_3172328_SNP [dm6]	C	T	2.098e^-4	0.758	UTR_3_PRIME CG18508 DOWNSTREAM CG18508 & 1 other
2L	7529941	2L_7529941_DEL [dm3] 2L_7529941_DEL [dm6]	TT	T	2.103e^-4	0.758	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17603473	2R_17603473_SNP [dm3] 2R_21715968_SNP [dm6]	C	T	2.104e^-4	0.758	UTR_3_PRIME HmgD DOWNSTREAM Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19367619	3R_19367619_SNP [dm3] 3R_23541897_SNP [dm6]	C	T	2.106e^-4	0.758	INTERGENIC
3R	26897586	3R_26897586_SNP [dm3] 3R_31071864_SNP [dm6]	A	G	2.109e^-4	0.758	INTRON Sox100B
3L	13677883	3L_13677883_DEL [dm3] 3L_13684783_DEL [dm6]	TT	T	2.113e^-4	0.758	INTRON bru-3
2R	10806381	2R_10806381_SNP [dm3] 2R_14918876_SNP [dm6]	C	T	2.118e^-4	0.758	INTRON CG10249
X	7511053	X_7511053_SNP [dm3] X_7617020_SNP [dm6]	C	A	2.119e^-4	0.758	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12179484	2L_12179484_SNP [dm3] 2L_12179484_SNP [dm6]	G	A	2.122e^-4	0.758	INTRON aret
2R	14477068	2R_14477068_DEL [dm3] 2R_18589563_DEL [dm6]	TT	T	2.122e^-4	0.758	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
2L	16576869	2L_16576869_SNP [dm3] 2L_16576869_SNP [dm6]	A	T	2.124e^-4	0.758	INTRON CG42389
X	14814246	X_14814246_SNP [dm3] X_14920213_SNP [dm6]	C	T	2.126e^-4	0.758	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25486090	3R_25486090_SNP [dm3] 3R_29660368_SNP [dm6]	C	T	2.146e^-4	0.759	UPSTREAM Dop1R2 INTERGENIC
2R	12636876	2R_12636876_SNP [dm3] 2R_16749371_SNP [dm6]	T	A	2.153e^-4	0.759	UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea INTRON Acp53C14b
2L	6464276	2L_6464276_SNP [dm3] 2L_6464276_SNP [dm6]	A	G	2.162e^-4	0.759	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	2.165e^-4	0.759	UPSTREAM CG10597 INTERGENIC
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	2.166e^-4	0.759	INTRON sano
2L	10938553	2L_10938553_SNP [dm3] 2L_10938553_SNP [dm6]	T	A	2.167e^-4	0.759	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
3L	17898637	3L_17898637_SNP [dm3] 3L_17905537_SNP [dm6]	T	A	2.176e^-4	0.759	INTRON Prestin
2R	4564320	2R_4564320_SNP [dm3] 2R_8676815_SNP [dm6]	C	T	2.180e^-4	0.759	UPSTREAM CG30354 INTRON Acsl
3L	9373840	3L_9373840_SNP [dm3] 3L_9380740_SNP [dm6]	G	C	2.180e^-4	0.759	EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	2.182e^-4	0.759	UTR_3_PRIME zfh1
3L	684711	3L_684711_SNP [dm3] 3L_684711_SNP [dm6]	A	G	2.183e^-4	0.759	INTRON ebd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3R	16264406	3R_16264406_SNP [dm3] 3R_20438684_SNP [dm6]	C	T	2.184e^-4	0.759	INTRON Gfrl
2R	16722778	2R_16722778_SNP [dm3] 2R_20835273_SNP [dm6]	A	G	2.186e^-4	0.759	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4420711	3R_4420711_SNP [dm3] 3R_8594989_SNP [dm6]	C	T	2.189e^-4	0.759	INTRON 5-HT2B
3R	22524158	3R_22524158_SNP [dm3] 3R_26698436_SNP [dm6]	T	C	2.190e^-4	0.759	UTR_3_PRIME amon
2L	20559654	2L_20559654_SNP [dm3] 2L_20559654_SNP [dm6]	G	T	2.194e^-4	0.759	INTERGENIC
2L	3045642	2L_3045642_SNP [dm3] 2L_3045642_SNP [dm6]	T	C	2.205e^-4	0.762	INTRON v_2_k05816
3R	720725	3R_720725_SNP [dm3] 3R_4895003_SNP [dm6]	G	C	2.213e^-4	0.762	INTERGENIC
2L	13481085	2L_13481085_INS [dm3] 2L_13481085_INS [dm6]	G	GCTTTCAACGGTAAAAG...	2.218e^-4	0.762	INTRON CG42784
X	7088954	X_7088954_SNP [dm3] X_7194921_SNP [dm6]	G	A	2.228e^-4	0.762	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5841144	2L_5841144_SNP [dm3] 2L_5841144_SNP [dm6]	A	T	2.232e^-4	0.762	INTRON TrissinR
2R	16854999	2R_16854999_DEL [dm3] 2R_20967494_DEL [dm6]	CC	C	2.235e^-4	0.762	INTERGENIC
X	13438480	X_13438480_SNP [dm3] X_13544447_SNP [dm6]	C	T	2.236e^-4	0.762	INTRON Cpr12A
3R	26668078	3R_26668078_INS [dm3] 3R_30842356_INS [dm6]	T	TCG	2.240e^-4	0.762	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6130306	2L_6130306_SNP [dm3] 2L_6130306_SNP [dm6]	C	G	2.240e^-4	0.762	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	8702237	3L_8702237_SNP [dm3] 3L_8709137_SNP [dm6]	T	C	2.244e^-4	0.762	INTERGENIC	regulatory region REDfly_CRMs
2L	2420418	2L_2420418_SNP [dm3] 2L_2420418_SNP [dm6]	G	C	2.256e^-4	0.762	UPSTREAM CG34447 & 1 other INTERGENIC
3R	24492880	3R_24492880_SNP [dm3] 3R_28667158_SNP [dm6]	A	G	2.259e^-4	0.762	INTERGENIC
2L	13122503	2L_13122503_SNP [dm3] 2L_13122503_SNP [dm6]	T	C	2.259e^-4	0.762	INTERGENIC
X	8471036	X_8471036_SNP [dm3] X_8577003_SNP [dm6]	G	T	2.262e^-4	0.762	INTRON CG12065
2R	4573957	2R_4573957_DEL [dm3] 2R_8686452_DEL [dm6]	TT	T	2.262e^-4	0.762	INTERGENIC
2L	6111796	2L_6111796_SNP [dm3] 2L_6111796_SNP [dm6]	A	T	2.282e^-4	0.765	INTRON stai
3R	16987862	3R_16987862_SNP [dm3] 3R_21162140_SNP [dm6]	C	A	2.282e^-4	0.765	INTRON SNF4Agamma
2R	10808489	2R_10808489_INS [dm3] 2R_14920984_INS [dm6]	G	GAG	2.283e^-4	0.765	INTRON CG10249
2L	5841254	2L_5841254_SNP [dm3] 2L_5841254_SNP [dm6]	C	A	2.306e^-4	0.767	INTRON TrissinR
2R	6825155	2R_6825155_SNP [dm3] 2R_10937650_SNP [dm6]	A	C	2.314e^-4	0.767	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16633843	2R_16633843_SNP [dm3] 2R_20746338_SNP [dm6]	G	A	2.318e^-4	0.767	INTRON dpr
X	5535378	X_5535378_SNP [dm3] X_5641345_SNP [dm6]	A	G	2.319e^-4	0.767	INTRON CG42492
2L	7188830	2L_7188830_SNP [dm3] 2L_7188830_SNP [dm6]	G	C	2.340e^-4	0.767	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14818069	X_14818069_SNP [dm3] X_14924036_SNP [dm6]	T	A	2.343e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
3L	15899830	3L_15899830_SNP [dm3] 3L_15906730_SNP [dm6]	C	T	2.346e^-4	0.767	SYNONYMOUS_CODING sff
2R	17590692	2R_17590692_SNP [dm3] 2R_21703187_SNP [dm6]	C	T	2.360e^-4	0.767	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	14047847	2L_14047847_SNP [dm3] 2L_14047847_SNP [dm6]	T	G	2.370e^-4	0.767	NON_SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4405719	3R_4405719_DEL [dm3] 3R_8579997_DEL [dm6]	ACCTT	A	2.372e^-4	0.767	INTRON 5-HT2B
2L	17996916	2L_17996916_SNP [dm3] 2L_17996916_SNP [dm6]	G	C	2.373e^-4	0.767	INTERGENIC
2R	19117350	2R_19117350_SNP [dm3] 2R_23229827_SNP [dm6]	T	C	2.374e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11356879	3R_11356879_SNP [dm3] 3R_15531157_SNP [dm6]	C	T	2.383e^-4	0.767	NON_SYNONYMOUS_CODING CG31296 DOWNSTREAM CG18522
2L	13205827	2L_13205827_SNP [dm3] 2L_13205827_SNP [dm6]	T	C	2.398e^-4	0.767	INTRON Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20588767	X_20588767_SNP [dm3] X_20717740_SNP [dm6]	A	G	2.402e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19630250	3R_19630250_SNP [dm3] 3R_23804528_SNP [dm6]	T	C	2.404e^-4	0.767	INTRON CG33111 & 1 other
2R	10800305	2R_10800305_SNP [dm3] 2R_14912800_SNP [dm6]	C	T	2.406e^-4	0.767	UPSTREAM CG10249 INTRON CG10249
2R	15346914	2R_15346914_SNP [dm3] 2R_19459409_SNP [dm6]	A	G	2.410e^-4	0.767	UTR_3_PRIME mei-W68 INTRON par-1
2R	12011947	2R_12011947_SNP [dm3] 2R_16124442_SNP [dm6]	C	T	2.413e^-4	0.767	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9599071	2R_9599071_INS [dm3] 2R_13711566_INS [dm6]	C	CAGTGGACTCGGGAC...	2.414e^-4	0.767	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	23573825	3R_23573825_SNP [dm3] 3R_27748103_SNP [dm6]	T	A	2.415e^-4	0.767	UTR_3_PRIME Ets98B DOWNSTREAM Ets98B
2L	22564600	2L_22564600_SNP [dm3] 2L_22671868_SNP [dm6]	T	A	2.422e^-4	0.767	INTRON CG40006
X	6429375	X_6429375_SNP [dm3] X_6535342_SNP [dm6]	T	G	2.426e^-4	0.767	INTRON dx	TF binding site BDTNP1_TFBS_dl
2R	8836441	2R_8836441_SNP [dm3] 2R_12948936_SNP [dm6]	T	G	2.429e^-4	0.767	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14366876	2L_14366876_SNP [dm3] 2L_14366876_SNP [dm6]	A	C	2.430e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8683603	2L_8683603_SNP [dm3] 2L_8683603_SNP [dm6]	A	T	2.433e^-4	0.767	DOWNSTREAM tRNA:CR31888 & 1 other INTRON CG9289
2L	5695779	2L_5695779_SNP [dm3] 2L_5695779_SNP [dm6]	A	G	2.436e^-4	0.767	INTERGENIC
2L	13688435	2L_13688435_SNP [dm3] 2L_13688435_SNP [dm6]	T	C	2.440e^-4	0.767	INTRON CG31814
2L	22017439	2L_22017439_SNP [dm3] 2L_22017439_SNP [dm6]	A	G	2.449e^-4	0.767	DOWNSTREAM CG31693 INTERGENIC
3R	22434575	3R_22434575_SNP [dm3] 3R_26608853_SNP [dm6]	T	G	2.453e^-4	0.767	DOWNSTREAM CR44951 INTERGENIC
X	17125766	X_17125766_SNP [dm3] X_17231733_SNP [dm6]	G	A	2.455e^-4	0.767	UPSTREAM CG10597 INTERGENIC
3R	10417150	3R_10417150_SNP [dm3] 3R_14591428_SNP [dm6]	C	G	2.462e^-4	0.767	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25227049	3R_25227049_SNP [dm3] 3R_29401327_SNP [dm6]	G	T	2.464e^-4	0.767	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3L	19386306	3L_19386306_SNP [dm3] 3L_19393206_SNP [dm6]	A	C	2.466e^-4	0.767	INTRON CG32206
2R	6597833	2R_6597833_SNP [dm3] 2R_10710328_SNP [dm6]	T	G	2.480e^-4	0.767	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_sens
2L	14183367	2L_14183367_SNP [dm3] 2L_14183367_SNP [dm6]	G	T	2.491e^-4	0.767	INTERGENIC
3R	14931678	3R_14931678_SNP [dm3] 3R_19105956_SNP [dm6]	C	G	2.496e^-4	0.767	INTRON CG6040
2L	10938587	2L_10938587_SNP [dm3] 2L_10938587_SNP [dm6]	C	T	2.498e^-4	0.767	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
X	20580471	X_20580471_SNP [dm3] X_20709444_SNP [dm6]	A	T	2.500e^-4	0.767	INTERGENIC	regulatory region REDfly_CRMs
3R	13669089	3R_13669089_SNP [dm3] 3R_17843367_SNP [dm6]	T	C	2.509e^-4	0.767	INTRON tinc
2R	17588801	2R_17588801_SNP [dm3] 2R_21701296_SNP [dm6]	C	G	2.515e^-4	0.767	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2L	3060294	2L_3060294_SNP [dm3] 2L_3060294_SNP [dm6]	A	G	2.516e^-4	0.767	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16576824	2L_16576824_SNP [dm3] 2L_16576824_SNP [dm6]	T	A	2.519e^-4	0.767	INTRON CG42389
3R	24605406	3R_24605406_SNP [dm3] 3R_28779684_SNP [dm6]	A	G	2.521e^-4	0.767	INTERGENIC
2R	10830264	2R_10830264_DEL [dm3] 2R_14942759_DEL [dm6]	CT	C	2.521e^-4	0.767	UTR_5_PRIME CG10257
2L	16696991	2L_16696991_SNP [dm3] 2L_16696991_SNP [dm6]	C	A	2.522e^-4	0.767	UPSTREAM mir-9c DOWNSTREAM CR44975 INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	2.522e^-4	0.767	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3R	25584713	3R_25584713_DEL [dm3] 3R_29758991_DEL [dm6]	CGCACTCCCAATGGTTTTCA...	C	2.524e^-4	0.767	EXON CR44953	TF binding site mE1_TFBS_HSA
2R	17190027	2R_17190027_DEL [dm3] 2R_21302522_DEL [dm6]	AGAACCACACTTCA...	A	2.534e^-4	0.767	INTRON CG42672
2L	13205785	2L_13205785_SNP [dm3] 2L_13205785_SNP [dm6]	T	A	2.538e^-4	0.767	INTRON Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13688466	2L_13688466_SNP [dm3] 2L_13688466_SNP [dm6]	C	T	2.548e^-4	0.767	INTRON CG31814
2L	22018227	2L_22018227_DEL [dm3] 2L_22018227_DEL [dm6]	ACCGCCCACACTTTTGAACA...	A	2.548e^-4	0.767	UPSTREAM CR33987 & 1 other DOWNSTREAM CG31693 INTERGENIC	TF binding site mE1_TFBS_D transposable element FlyBase
2R	8839933	2R_8839933_SNP [dm3] 2R_12952428_SNP [dm6]	C	T	2.549e^-4	0.767	UPSTREAM CG13321 & 2 others INTERGENIC
2R	12636834	2R_12636834_SNP [dm3] 2R_16749329_SNP [dm6]	G	A	2.550e^-4	0.767	UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea INTRON Acp53C14b
3R	6938351	3R_6938351_SNP [dm3] 3R_11112629_SNP [dm6]	T	C	2.550e^-4	0.767	INTERGENIC
3R	14427856	3R_14427856_SNP [dm3] 3R_18602134_SNP [dm6]	C	G	2.554e^-4	0.767	INTRON qin & 1 other
2L	5869363	2L_5869363_SNP [dm3] 2L_5869363_SNP [dm6]	C	G	2.556e^-4	0.767	INTRON rau
3R	15393938	3R_15393938_SNP [dm3] 3R_19568216_SNP [dm6]	A	T	2.556e^-4	0.767	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
X	13438561	X_13438561_SNP [dm3] X_13544528_SNP [dm6]	T	C	2.560e^-4	0.767	SYNONYMOUS_CODING Cpr12A
3R	16264926	3R_16264926_SNP [dm3] 3R_20439204_SNP [dm6]	A	G	2.565e^-4	0.767	INTRON Gfrl
2L	5695781	2L_5695781_SNP [dm3] 2L_5695781_SNP [dm6]	G	A	2.568e^-4	0.767	INTERGENIC
2R	8837073	2R_8837073_SNP [dm3] 2R_12949568_SNP [dm6]	A	C	2.569e^-4	0.767	NON_SYNONYMOUS_CODING CG44251 DOWNSTREAM CG44250	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21998975	2L_21998975_INS [dm3] 2L_21998975_INS [dm6]	A	AACATTTCCGTTTCTCGGTT...	2.574e^-4	0.767	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2R	18534694	2R_18534694_SNP [dm3] 2R_22647189_SNP [dm6]	C	T	2.577e^-4	0.767	SYNONYMOUS_CODING CG30195 UPSTREAM CG2852 DOWNSTREAM CG34446 & 1 other	TF binding site mE1_TFBS_Trl
2R	17009909	2R_17009909_SNP [dm3] 2R_21122404_SNP [dm6]	C	A	2.581e^-4	0.767	SYNONYMOUS_CODING ktub	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14981531	3R_14981531_SNP [dm3] 3R_19155809_SNP [dm6]	C	G	2.587e^-4	0.767	INTRON CG11779	TF binding site mE1_TFBS_sens
2L	6157129	2L_6157129_SNP [dm3] 2L_6157129_SNP [dm6]	A	T	2.588e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9962684	3R_9962684_SNP [dm3] 3R_14136962_SNP [dm6]	G	T	2.593e^-4	0.767	INTERGENIC
3L	6750592	3L_6750592_SNP [dm3] 3L_6757492_SNP [dm6]	G	A	2.598e^-4	0.767	UPSTREAM CG10103 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16541433	2L_16541433_SNP [dm3] 2L_16541433_SNP [dm6]	A	G	2.599e^-4	0.767	INTERGENIC
3R	22512754	3R_22512754_DEL [dm3] 3R_26687032_DEL [dm6]	CC	C	2.603e^-4	0.767	INTERGENIC
3R	16865783	3R_16865783_SNP [dm3] 3R_21040061_SNP [dm6]	G	A	2.606e^-4	0.767	SYNONYMOUS_CODING Dhc93AB
2L	7188762	2L_7188762_SNP [dm3] 2L_7188762_SNP [dm6]	A	T	2.611e^-4	0.767	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16019701	3L_16019701_SNP [dm3] 3L_16026601_SNP [dm6]	A	T	2.613e^-4	0.767	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14818088	X_14818088_SNP [dm3] X_14924055_SNP [dm6]	C	T	2.613e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
2R	17751002	2R_17751002_INS [dm3] 2R_21863497_INS [dm6]	T	TAAGGT	2.617e^-4	0.767	INTERGENIC
2R	14939793	2R_14939793_SNP [dm3] 2R_19052288_SNP [dm6]	G	T	2.619e^-4	0.767	INTERGENIC
2L	8308825	2L_8308825_SNP [dm3] 2L_8308825_SNP [dm6]	C	T	2.623e^-4	0.767	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	11712675	2R_11712675_SNP [dm3] 2R_15825170_SNP [dm6]	G	C	2.630e^-4	0.767	INTRON tun	TF binding site mE1_TFBS_cad
2R	14671064	2R_14671064_SNP [dm3] 2R_18783559_SNP [dm6]	C	A	2.634e^-4	0.767	UTR_5_PRIME CG15080
2R	14439885	2R_14439885_SNP [dm3] 2R_18552380_SNP [dm6]	A	G	2.636e^-4	0.767	INTERGENIC
X	9587494	X_9587494_SNP [dm3] X_9693461_SNP [dm6]	T	A	2.638e^-4	0.767	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5509886	2L_5509886_SNP [dm3] 2L_5509886_SNP [dm6]	T	C	2.646e^-4	0.767	INTERGENIC
3R	25429926	3R_25429926_SNP [dm3] 3R_29604204_SNP [dm6]	G	T	2.662e^-4	0.767	INTRON alph
2L	15244701	2L_15244701_SNP [dm3] 2L_15244701_SNP [dm6]	T	A	2.663e^-4	0.767	INTRON ZnT35C
3R	7167749	3R_7167749_SNP [dm3] 3R_11342027_SNP [dm6]	C	T	2.664e^-4	0.767	INTRON pros
2R	13583080	2R_13583080_SNP [dm3] 2R_17695575_SNP [dm6]	G	A	2.665e^-4	0.767	UPSTREAM swi2 DOWNSTREAM rdgBbeta INTERGENIC
3L	678675	3L_678675_SNP [dm3] 3L_678675_SNP [dm6]	T	A	2.675e^-4	0.767	NON_SYNONYMOUS_CODING CG17129	TF binding site mE1_TFBS_sens
2L	16576811	2L_16576811_SNP [dm3] 2L_16576811_SNP [dm6]	A	C	2.677e^-4	0.767	INTRON CG42389
3R	19630138	3R_19630138_SNP [dm3] 3R_23804416_SNP [dm6]	A	T	2.677e^-4	0.767	INTRON CG33111 & 1 other
3L	15187557	3L_15187557_SNP [dm3] 3L_15194457_SNP [dm6]	C	T	2.684e^-4	0.767	INTERGENIC
3R	21717060	3R_21717060_SNP [dm3] 3R_25891338_SNP [dm6]	C	A	2.688e^-4	0.767	SYNONYMOUS_CODING Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17821205	3R_17821205_SNP [dm3] 3R_21995483_SNP [dm6]	G	A	2.689e^-4	0.767	INTRON Eip93F
2R	19384499	2R_19384499_SNP [dm3] 2R_23496976_SNP [dm6]	C	T	2.697e^-4	0.767	INTERGENIC
2L	5864462	2L_5864462_SNP [dm3] 2L_5864462_SNP [dm6]	G	A	2.701e^-4	0.767	INTRON rau
2L	17515591	2L_17515591_SNP [dm3] 2L_17515591_SNP [dm6]	C	A	2.701e^-4	0.767	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
2R	10484522	2R_10484522_SNP [dm3] 2R_14597017_SNP [dm6]	G	C	2.710e^-4	0.767	INTRON RpI1
2L	15598921	2L_15598921_SNP [dm3] 2L_15598921_SNP [dm6]	A	T	2.714e^-4	0.767	INTERGENIC
2L	5695778	2L_5695778_SNP [dm3] 2L_5695778_SNP [dm6]	T	C	2.722e^-4	0.767	INTERGENIC
2L	6124879	2L_6124879_SNP [dm3] 2L_6124879_SNP [dm6]	A	T	2.722e^-4	0.767	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	12011941	2R_12011941_SNP [dm3] 2R_16124436_SNP [dm6]	C	T	2.727e^-4	0.767	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16575271	2R_16575271_SNP [dm3] 2R_20687766_SNP [dm6]	G	C	2.731e^-4	0.767	UPSTREAM Gr57a INTERGENIC
2R	20026877	2R_20026877_SNP [dm3] 2R_24139354_SNP [dm6]	T	C	2.741e^-4	0.767	UPSTREAM Dat DOWNSTREAM CR44826 INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	7188166	2L_7188166_SNP [dm3] 2L_7188166_SNP [dm6]	G	C	2.755e^-4	0.767	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	22024283	2L_22024283_SNP [dm3] 2L_22024283_SNP [dm6]	C	G	2.755e^-4	0.767	UTR_3_PRIME tio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12400642	2R_12400642_SNP [dm3] 2R_16513137_SNP [dm6]	A	G	2.770e^-4	0.767	INTRON Sema-2a
X	13221667	X_13221667_SNP [dm3] X_13327634_SNP [dm6]	A	T	2.772e^-4	0.767	INTRON IP3K2
2L	4213428	2L_4213428_SNP [dm3] 2L_4213428_SNP [dm6]	G	A	2.774e^-4	0.767	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20801371	2L_20801371_SNP [dm3] 2L_20801371_SNP [dm6]	G	A	2.776e^-4	0.767	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26668004	3R_26668004_SNP [dm3] 3R_30842282_SNP [dm6]	C	T	2.780e^-4	0.767	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21441541	3R_21441541_SNP [dm3] 3R_25615819_SNP [dm6]	T	C	2.782e^-4	0.767	INTRON Npl4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6336323	2R_6336323_DEL [dm3] 2R_10448818_DEL [dm6]	TCTAGCAAAAGTAAATTGTA...	C	2.784e^-4	0.767	DOWNSTREAM Cyp49a1 INTRON Galphao
X	14395226	X_14395226_SNP [dm3] X_14501193_SNP [dm6]	T	A	2.786e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
3L	464730	3L_464730_SNP [dm3] 3L_464730_SNP [dm6]	C	T	2.787e^-4	0.767	INTRON klar
3R	25370232	3R_25370232_SNP [dm3] 3R_29544510_SNP [dm6]	T	A	2.797e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2L	5840873	2L_5840873_SNP [dm3] 2L_5840873_SNP [dm6]	T	C	2.800e^-4	0.767	INTRON TrissinR
X	12539709	X_12539709_SNP [dm3] X_12645676_SNP [dm6]	A	G	2.803e^-4	0.767	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	3856923	3L_3856923_SNP [dm3] 3L_3856923_SNP [dm6]	T	A	2.818e^-4	0.767	INTRON Awh
2R	16716907	2R_16716907_SNP [dm3] 2R_20829402_SNP [dm6]	A	G	2.818e^-4	0.767	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15144168	3R_15144168_INS [dm3] 3R_19318446_INS [dm6]	C	TGT	2.826e^-4	0.767	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	21976917	2L_21976917_SNP [dm3] 2L_21976917_SNP [dm6]	T	C	2.834e^-4	0.767	INTERGENIC
2R	15946215	2R_15946215_SNP [dm3] 2R_20058710_SNP [dm6]	C	T	2.836e^-4	0.767	EXON CR44631	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	11355944	3R_11355944_SNP [dm3] 3R_15530222_SNP [dm6]	G	A	2.846e^-4	0.767	UTR_3_PRIME CG31296 DOWNSTREAM CG31296	TF binding site mE1_TFBS_cad
X	14804793	X_14804793_SNP [dm3] X_14910760_SNP [dm6]	C	T	2.855e^-4	0.767	SYNONYMOUS_CODING CG14406 INTRON Flo2
3R	21972408	3R_21972408_INS [dm3] 3R_26146686_INS [dm6]	G	GG	2.859e^-4	0.767	INTERGENIC
3R	5902226	3R_5902226_DEL [dm3] 3R_10076504_DEL [dm6]	ACATGAA	A	2.863e^-4	0.767	INTERGENIC
3R	19670802	3R_19670802_SNP [dm3] 3R_23845080_SNP [dm6]	T	C	2.872e^-4	0.767	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	17960882	3R_17960882_SNP [dm3] 3R_22135160_SNP [dm6]	T	G	2.873e^-4	0.767	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5862261	2L_5862261_SNP [dm3] 2L_5862261_SNP [dm6]	G	A	2.881e^-4	0.767	INTRON rau
2L	18038924	2L_18038924_SNP [dm3] 2L_18038924_SNP [dm6]	T	A	2.884e^-4	0.767	INTRON rdo
2L	13479425	2L_13479425_SNP [dm3] 2L_13479425_SNP [dm6]	A	G	2.885e^-4	0.767	INTRON CG42784
3R	2578437	3R_2578437_SNP [dm3] 3R_6752715_SNP [dm6]	C	T	2.885e^-4	0.767	DOWNSTREAM zen INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8835178	2R_8835178_SNP [dm3] 2R_12947673_SNP [dm6]	A	T	2.885e^-4	0.767	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14350320	3L_14350320_SNP [dm3] 3L_14357220_SNP [dm6]	A	G	2.887e^-4	0.767	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	7203268	2L_7203268_SNP [dm3] 2L_7203268_SNP [dm6]	G	C	2.893e^-4	0.767	INTRON CG4502	TF binding site BDTNP1_TFBS_dl
2L	14366848	2L_14366848_SNP [dm3] 2L_14366848_SNP [dm6]	G	T	2.899e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2839933	2L_2839933_SNP [dm3] 2L_2839933_SNP [dm6]	T	C	2.900e^-4	0.767	UPSTREAM CG2975 DOWNSTREAM CR45342 & 1 other INTERGENIC
2R	19235786	2R_19235786_SNP [dm3] 2R_23348263_SNP [dm6]	G	A	2.900e^-4	0.767	UPSTREAM CG3502 DOWNSTREAM CG9863 INTERGENIC
3R	18537741	3R_18537741_SNP [dm3] 3R_22712019_SNP [dm6]	T	C	2.902e^-4	0.767	INTRON wge	TF binding site mE1_TFBS_Kr
3L	17393857	3L_17393857_SNP [dm3] 3L_17400757_SNP [dm6]	G	A	2.903e^-4	0.767	UTR_3_PRIME noe INTRON blot
X	17276163	X_17276163_SNP [dm3] X_17382130_SNP [dm6]	C	T	2.904e^-4	0.767	INTERGENIC
3L	15935789	3L_15935789_SNP [dm3] 3L_15942689_SNP [dm6]	A	T	2.907e^-4	0.767	INTRON Pka-C3
2L	9773121	2L_9773121_SNP [dm3] 2L_9773121_SNP [dm6]	C	T	2.914e^-4	0.767	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
3L	677215	3L_677215_SNP [dm3] 3L_677215_SNP [dm6]	C	T	2.920e^-4	0.767	DOWNSTREAM CG17129 INTERGENIC
3R	23747168	3R_23747168_SNP [dm3] 3R_27921446_SNP [dm6]	C	T	2.927e^-4	0.767	NON_SYNONYMOUS_CODING BCAS2 UPSTREAM CG12259	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	2.931e^-4	0.767	SYNONYMOUS_CODING Plod
2R	18497233	2R_18497233_SNP [dm3] 2R_22609728_SNP [dm6]	T	C	2.933e^-4	0.767	SYNONYMOUS_CODING CG4329 DOWNSTREAM Vps20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11561005	X_11561005_SNP [dm3] X_11666972_SNP [dm6]	C	T	2.943e^-4	0.767	SYNONYMOUS_CODING Ptp10D
3R	13669127	3R_13669127_SNP [dm3] 3R_17843405_SNP [dm6]	G	A	2.954e^-4	0.767	INTRON tinc
3R	21717075	3R_21717075_SNP [dm3] 3R_25891353_SNP [dm6]	T	A	2.955e^-4	0.767	SYNONYMOUS_CODING Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26854963	3R_26854963_SNP [dm3] 3R_31029241_SNP [dm6]	G	C	2.957e^-4	0.767	INTERGENIC
3R	25365297	3R_25365297_SNP [dm3] 3R_29539575_SNP [dm6]	G	C	2.958e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8217957	2L_8217957_SNP [dm3] 2L_8217957_SNP [dm6]	A	T	2.959e^-4	0.767	UTR_5_PRIME CG8292 DOWNSTREAM Snx6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20801145	2L_20801145_SNP [dm3] 2L_20801145_SNP [dm6]	T	G	2.961e^-4	0.767	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9840733	3R_9840733_SNP [dm3] 3R_14015011_SNP [dm6]	T	A	2.964e^-4	0.767	INTRON rdx
3R	22911391	3R_22911391_SNP [dm3] 3R_27085669_SNP [dm6]	T	C	2.971e^-4	0.767	INTRON Cpr97Ea
2R	10484084	2R_10484084_SNP [dm3] 2R_14596579_SNP [dm6]	C	T	2.985e^-4	0.767	DOWNSTREAM CG12869 INTRON RpI1	TF binding site mE1_TFBS_cad
2L	18888578	2L_18888578_SNP [dm3] 2L_18888578_SNP [dm6]	A	T	2.989e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	16629770	3L_16629770_INS [dm3] 3L_16636670_INS [dm6]	C	CTC	2.991e^-4	0.767	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13583070	2R_13583070_SNP [dm3] 2R_17695565_SNP [dm6]	G	T	2.994e^-4	0.767	UPSTREAM swi2 DOWNSTREAM rdgBbeta INTERGENIC
X	3222589	X_3222589_SNP [dm3] X_3328556_SNP [dm6]	T	G	2.998e^-4	0.767	UPSTREAM dnc INTRON CR44886 & 1 other
2L	21998984	2L_21998984_SNP [dm3] 2L_21998984_SNP [dm6]	A	G	2.999e^-4	0.767	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
3R	16195399	3R_16195399_SNP [dm3] 3R_20369677_SNP [dm6]	C	T	3.001e^-4	0.767	INTERGENIC
2R	11473243	2R_11473243_SNP [dm3] 2R_15585738_SNP [dm6]	A	T	3.005e^-4	0.767	INTERGENIC
3R	17935417	3R_17935417_SNP [dm3] 3R_22109695_SNP [dm6]	T	C	3.010e^-4	0.767	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18104124	3R_18104124_SNP [dm3] 3R_22278402_SNP [dm6]	C	G	3.010e^-4	0.767	SYNONYMOUS_CODING SKIP	TF binding site BDTNP1_TFBS_twi
3R	13972411	3R_13972411_SNP [dm3] 3R_18146689_SNP [dm6]	T	G	3.014e^-4	0.767	INTERGENIC
X	17130908	X_17130908_SNP [dm3] X_17236875_SNP [dm6]	C	T	3.020e^-4	0.767	INTRON f
3L	3016273	3L_3016273_SNP [dm3] 3L_3016273_SNP [dm6]	C	T	3.021e^-4	0.767	SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
3R	25194979	3R_25194979_SNP [dm3] 3R_29369257_SNP [dm6]	A	G	3.024e^-4	0.767	UPSTREAM CG45546 INTERGENIC
2L	10381527	2L_10381527_SNP [dm3] 2L_10381527_SNP [dm6]	G	A	3.026e^-4	0.767	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
3L	9373901	3L_9373901_SNP [dm3] 3L_9380801_SNP [dm6]	T	C	3.030e^-4	0.767	EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9709631	X_9709631_SNP [dm3] X_9815598_SNP [dm6]	A	T	3.032e^-4	0.767	INTRON CG32698
2L	3708262	2L_3708262_SNP [dm3] 2L_3708262_SNP [dm6]	A	C	3.039e^-4	0.767	INTRON cutlet	TF binding site mE1_TFBS_cad
3L	15871396	3L_15871396_SNP [dm3] 3L_15878296_SNP [dm6]	T	C	3.047e^-4	0.767	INTRON pHCl
2L	1022512	2L_1022512_SNP [dm3] 2L_1022512_SNP [dm6]	A	T	3.063e^-4	0.767	INTRON IA-2
3R	19702967	3R_19702967_SNP [dm3] 3R_23877245_SNP [dm6]	C	A	3.066e^-4	0.767	INTRON Pli
2R	8835142	2R_8835142_SNP [dm3] 2R_12947637_SNP [dm6]	A	C	3.066e^-4	0.767	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7133185	3R_7133185_SNP [dm3] 3R_11307463_SNP [dm6]	C	T	3.072e^-4	0.767	INTERGENIC
2L	16576936	2L_16576936_SNP [dm3] 2L_16576936_SNP [dm6]	G	T	3.074e^-4	0.767	INTRON CG42389
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	3.080e^-4	0.767	INTRON fra
X	2700337	X_2700337_SNP [dm3] X_2806304_SNP [dm6]	C	G	3.083e^-4	0.767	INTRON kirre
3L	12596437	3L_12596437_SNP [dm3] 3L_12603337_SNP [dm6]	G	A	3.085e^-4	0.767	INTERGENIC
X	16722420	X_16722420_SNP [dm3] X_16828387_SNP [dm6]	C	T	3.088e^-4	0.767	UPSTREAM CG13004 INTRON CG13004
3L	11219580	3L_11219580_SNP [dm3] 3L_11226480_SNP [dm6]	T	C	3.094e^-4	0.767	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
3R	13668747	3R_13668747_SNP [dm3] 3R_17843025_SNP [dm6]	G	A	3.097e^-4	0.767	INTRON tinc
3R	26756822	3R_26756822_SNP [dm3] 3R_30931100_SNP [dm6]	T	C	3.100e^-4	0.767	DOWNSTREAM Ptx1 INTERGENIC
3R	13468255	3R_13468255_SNP [dm3] 3R_17642533_SNP [dm6]	C	T	3.111e^-4	0.767	INTRON CG43175
2R	18212113	2R_18212113_SNP [dm3] 2R_22324608_SNP [dm6]	C	G	3.112e^-4	0.767	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16463850	2R_16463850_SNP [dm3] 2R_20576345_SNP [dm6]	C	G	3.113e^-4	0.767	INTRON qsm
2R	1918419	2R_1918419_SNP [dm3] 2R_6030914_SNP [dm6]	G	A	3.117e^-4	0.767	INTRON SCAP
X	15022299	X_15022299_SNP [dm3] X_15128266_SNP [dm6]	A	G	3.127e^-4	0.767	INTRON drd
2L	5695765	2L_5695765_SNP [dm3] 2L_5695765_SNP [dm6]	A	G	3.127e^-4	0.767	INTERGENIC
2L	2688030	2L_2688030_SNP [dm3] 2L_2688030_SNP [dm6]	A	T	3.129e^-4	0.767	INTRON CG31690
X	14818201	X_14818201_SNP [dm3] X_14924168_SNP [dm6]	A	T	3.132e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
2R	18320640	2R_18320640_SNP [dm3] 2R_22433135_SNP [dm6]	C	T	3.143e^-4	0.767	INTERGENIC
3L	13111510	3L_13111510_SNP [dm3] 3L_13118410_SNP [dm6]	G	A	3.147e^-4	0.767	DOWNSTREAM trn INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13500540	2L_13500540_SNP [dm3] 2L_13500540_SNP [dm6]	T	C	3.153e^-4	0.767	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14091078	3L_14091078_SNP [dm3] 3L_14097978_SNP [dm6]	T	A	3.153e^-4	0.767	UTR_5_PRIME Fbp1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	6825149	2R_6825149_INS [dm3] 2R_10937644_INS [dm6]	T	TGTAACATTT	3.155e^-4	0.767	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2406538	3L_2406538_SNP [dm3] 3L_2406538_SNP [dm6]	T	A	3.158e^-4	0.767	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3021662	2L_3021662_SNP [dm3] 2L_3021662_SNP [dm6]	C	T	3.160e^-4	0.767	UTR_3_PRIME alpha4GT1 DOWNSTREAM CG17264
3R	22434585	3R_22434585_SNP [dm3] 3R_26608863_SNP [dm6]	A	T	3.162e^-4	0.767	DOWNSTREAM CR44951 INTERGENIC
2R	16686707	2R_16686707_DEL [dm3] 2R_20799202_DEL [dm6]	TGT	T	3.162e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2999890	X_2999890_SNP [dm3] X_3105857_SNP [dm6]	G	A	3.163e^-4	0.767	INTRON kirre
3L	2811037	3L_2811037_SNP [dm3] 3L_2811037_SNP [dm6]	A	T	3.177e^-4	0.767	INTRON CG43444
2L	21976892	2L_21976892_SNP [dm3] 2L_21976892_SNP [dm6]	C	G	3.177e^-4	0.767	INTERGENIC
X	9115300	X_9115300_SNP [dm3] X_9221267_SNP [dm6]	A	G	3.182e^-4	0.767	SYNONYMOUS_CODING t
X	6429369	X_6429369_SNP [dm3] X_6535336_SNP [dm6]	T	A	3.186e^-4	0.767	INTRON dx	TF binding site BDTNP1_TFBS_dl
3L	14586707	3L_14586707_SNP [dm3] 3L_14593607_SNP [dm6]	T	A	3.191e^-4	0.767	INTRON HGTX
3R	13669374	3R_13669374_SNP [dm3] 3R_17843652_SNP [dm6]	C	T	3.193e^-4	0.767	INTRON tinc
3L	14562553	3L_14562553_SNP [dm3] 3L_14569453_SNP [dm6]	G	A	3.194e^-4	0.767	INTERGENIC
2R	14579383	2R_14579383_SNP [dm3] 2R_18691878_SNP [dm6]	T	A	3.199e^-4	0.767	INTRON Sik3
X	7088900	X_7088900_DEL [dm3] X_7194867_DEL [dm6]	GG	G	3.199e^-4	0.767	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12401277	2R_12401277_SNP [dm3] 2R_16513772_SNP [dm6]	A	T	3.200e^-4	0.767	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	3908890	3R_3908890_SNP [dm3] 3R_8083168_SNP [dm6]	C	A	3.203e^-4	0.767	INTRON mAChR-B
2R	6868971	2R_6868971_SNP [dm3] 2R_10981466_SNP [dm6]	A	T	3.207e^-4	0.767	UTR_3_PRIME luna
2R	16697840	2R_16697840_SNP [dm3] 2R_20810335_SNP [dm6]	C	A	3.209e^-4	0.767	INTERGENIC
2L	5868974	2L_5868974_SNP [dm3] 2L_5868974_SNP [dm6]	C	T	3.213e^-4	0.767	INTRON rau
2R	19253122	2R_19253122_SNP [dm3] 2R_23365599_SNP [dm6]	C	T	3.215e^-4	0.767	NON_SYNONYMOUS_CODING vir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11763548	2R_11763548_SNP [dm3] 2R_15876043_SNP [dm6]	A	T	3.219e^-4	0.767	SPLICE_SITE_REGION sli INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	15244153	2L_15244153_SNP [dm3] 2L_15244153_SNP [dm6]	G	A	3.227e^-4	0.767	INTRON ZnT35C
2R	16548488	2R_16548488_SNP [dm3] 2R_20660983_SNP [dm6]	T	A	3.240e^-4	0.767	UTR_3_PRIME Lrt UPSTREAM CG13437
3R	19367616	3R_19367616_SNP [dm3] 3R_23541894_SNP [dm6]	A	T	3.241e^-4	0.767	INTERGENIC
2L	12797181	2L_12797181_SNP [dm3] 2L_12797181_SNP [dm6]	A	T	3.255e^-4	0.767	INTERGENIC
3R	20750360	3R_20750360_SNP [dm3] 3R_24924638_SNP [dm6]	G	T	3.263e^-4	0.767	NON_SYNONYMOUS_CODING Mink UPSTREAM Trf4-2	TF binding site mE1_TFBS_cad
2L	9216538	2L_9216538_SNP [dm3] 2L_9216538_SNP [dm6]	A	C	3.267e^-4	0.767	INTRON tai
2L	6124716	2L_6124716_SNP [dm3] 2L_6124716_SNP [dm6]	G	A	3.271e^-4	0.767	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	18211936	2R_18211936_SNP [dm3] 2R_22324431_SNP [dm6]	G	T	3.276e^-4	0.767	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22433907	3R_22433907_SNP [dm3] 3R_26608185_SNP [dm6]	C	A	3.281e^-4	0.767	EXON CR44951
X	20878238	X_20878238_SNP [dm3] X_21007211_SNP [dm6]	C	T	3.283e^-4	0.767	INTERGENIC
3R	23323044	3R_23323044_SNP [dm3] 3R_27497322_SNP [dm6]	C	G	3.284e^-4	0.767	INTERGENIC
3R	25225026	3R_25225026_SNP [dm3] 3R_29399304_SNP [dm6]	C	T	3.295e^-4	0.767	INTRON Ptp99A
3R	19099828	3R_19099828_SNP [dm3] 3R_23274106_SNP [dm6]	G	A	3.304e^-4	0.767	INTRON orb
3R	24994329	3R_24994329_SNP [dm3] 3R_29168607_SNP [dm6]	C	T	3.311e^-4	0.767	INTRON CG11898
3R	26034172	3R_26034172_SNP [dm3] 3R_30208450_SNP [dm6]	T	A	3.314e^-4	0.767	UPSTREAM snoRNA:Psi18S-1377c & 3 others INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	6157009	2L_6157009_SNP [dm3] 2L_6157009_SNP [dm6]	T	A	3.321e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	12179430	2L_12179430_SNP [dm3] 2L_12179430_SNP [dm6]	A	T	3.322e^-4	0.767	INTRON aret
3R	7279083	3R_7279083_SNP [dm3] 3R_11453361_SNP [dm6]	A	C	3.322e^-4	0.767	INTRON CG17230 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12163719	X_12163719_SNP [dm3] X_12269686_SNP [dm6]	C	T	3.323e^-4	0.767	INTRON Ten-a
X	20875935	X_20875935_SNP [dm3] X_21004908_SNP [dm6]	T	C	3.324e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	12636838	2R_12636838_SNP [dm3] 2R_16749333_SNP [dm6]	A	G	3.325e^-4	0.767	UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea INTRON Acp53C14b
3R	23784075	3R_23784075_SNP [dm3] 3R_27958353_SNP [dm6]	T	C	3.341e^-4	0.767	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23784084	3R_23784084_SNP [dm3] 3R_27958362_SNP [dm6]	A	T	3.341e^-4	0.767	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17016682	2R_17016682_SNP [dm3] 2R_21129177_SNP [dm6]	C	T	3.342e^-4	0.767	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18291056	2R_18291056_SNP [dm3] 2R_22403551_SNP [dm6]	T	C	3.349e^-4	0.767	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15088579	2R_15088579_SNP [dm3] 2R_19201074_SNP [dm6]	A	G	3.351e^-4	0.767	INTRON hppy
X	12241615	X_12241615_SNP [dm3] X_12347582_SNP [dm6]	A	G	3.352e^-4	0.767	INTERGENIC
2R	12013949	2R_12013949_SNP [dm3] 2R_16126444_SNP [dm6]	C	T	3.360e^-4	0.767	INTRON spin	TF binding site BDTNP1_TFBS_dl
3R	25483333	3R_25483333_SNP [dm3] 3R_29657611_SNP [dm6]	G	C	3.367e^-4	0.767	INTRON Dop1R2
2L	16338530	2L_16338530_SNP [dm3] 2L_16338530_SNP [dm6]	C	T	3.367e^-4	0.767	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16763609	3R_16763609_SNP [dm3] 3R_20937887_SNP [dm6]	G	A	3.368e^-4	0.767	INTRON CG31191
3L	1323838	3L_1323838_SNP [dm3] 3L_1323838_SNP [dm6]	C	T	3.374e^-4	0.767	UPSTREAM Myo61F INTRON Myo61F & 1 other
2R	12014311	2R_12014311_SNP [dm3] 2R_16126806_SNP [dm6]	T	G	3.376e^-4	0.767	INTRON spin
2R	16679008	2R_16679008_DEL [dm3] 2R_20791503_DEL [dm6]	AAAAGTCAGGGGA...	A	3.377e^-4	0.767	UTR_3_PRIME CG43668 UPSTREAM CG43677
3R	26295436	3R_26295436_SNP [dm3] 3R_30469714_SNP [dm6]	T	C	3.380e^-4	0.767	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
2L	9651786	2L_9651786_SNP [dm3] 2L_9651786_SNP [dm6]	C	T	3.380e^-4	0.767	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_sens
3L	14586706	3L_14586706_SNP [dm3] 3L_14593606_SNP [dm6]	T	A	3.406e^-4	0.767	INTRON HGTX
2R	16457860	2R_16457860_SNP [dm3] 2R_20570355_SNP [dm6]	C	T	3.408e^-4	0.767	INTRON qsm	TF binding site BDTNP1_TFBS_prd
3L	13241367	3L_13241367_SNP [dm3] 3L_13248267_SNP [dm6]	C	T	3.412e^-4	0.767	SYNONYMOUS_CODING CG32119 INTRON caps
3R	13350584	3R_13350584_SNP [dm3] 3R_17524862_SNP [dm6]	A	T	3.418e^-4	0.767	INTERGENIC
3L	20716658	3L_20716658_SNP [dm3] 3L_20723558_SNP [dm6]	A	G	3.420e^-4	0.767	INTERGENIC
3R	23901337	3R_23901337_SNP [dm3] 3R_28075615_SNP [dm6]	T	A	3.423e^-4	0.767	INTRON CG34362
3R	23305996	3R_23305996_SNP [dm3] 3R_27480274_SNP [dm6]	G	A	3.429e^-4	0.767	SYNONYMOUS_CODING Cyp6a18
3R	10673377	3R_10673377_SNP [dm3] 3R_14847655_SNP [dm6]	G	T	3.434e^-4	0.767	DOWNSTREAM CG3610 INTRON btsz
2R	16697852	2R_16697852_SNP [dm3] 2R_20810347_SNP [dm6]	A	C	3.435e^-4	0.767	INTERGENIC
2L	15598953	2L_15598953_SNP [dm3] 2L_15598953_SNP [dm6]	A	C	3.437e^-4	0.767	INTERGENIC
X	6203786	X_6203786_SNP [dm3] X_6309753_SNP [dm6]	T	C	3.439e^-4	0.767	INTRON CG15894
X	13008467	X_13008467_SNP [dm3] X_13114434_SNP [dm6]	C	A	3.439e^-4	0.767	UPSTREAM CG42237 INTERGENIC
3L	19411763	3L_19411763_SNP [dm3] 3L_19418663_SNP [dm6]	T	A	3.440e^-4	0.767	INTERGENIC
3R	23425187	3R_23425187_DEL [dm3] 3R_27599465_DEL [dm6]	TAAGCACT	T	3.442e^-4	0.767	INTRON dsd	TF binding site mE1_TFBS_cad
3L	3486349	3L_3486349_SNP [dm3] 3L_3486349_SNP [dm6]	T	C	3.448e^-4	0.767	INTRON CG42324
2L	15608141	2L_15608141_SNP [dm3] 2L_15608141_SNP [dm6]	C	G	3.448e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10886776	3L_10886776_SNP [dm3] 3L_10893676_SNP [dm6]	C	T	3.449e^-4	0.767	UPSTREAM Cpr67Fb EXON CR45171
3L	16733887	3L_16733887_SNP [dm3] 3L_16740787_SNP [dm6]	G	A	3.450e^-4	0.767	INTERGENIC
3R	8208016	3R_8208016_SNP [dm3] 3R_12382294_SNP [dm6]	G	T	3.460e^-4	0.767	NON_SYNONYMOUS_CODING CG10035	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16104879	3R_16104879_SNP [dm3] 3R_20279157_SNP [dm6]	A	G	3.462e^-4	0.767	INTRON cic
3L	17590374	3L_17590374_SNP [dm3] 3L_17597274_SNP [dm6]	T	G	3.463e^-4	0.767	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3R	7089525	3R_7089525_SNP [dm3] 3R_11263803_SNP [dm6]	G	T	3.465e^-4	0.767	INTERGENIC
3L	6737978	3L_6737978_SNP [dm3] 3L_6744878_SNP [dm6]	C	T	3.474e^-4	0.767	NON_SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16762773	3L_16762773_SNP [dm3] 3L_16769673_SNP [dm6]	G	A	3.481e^-4	0.767	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5999680	3R_5999680_SNP [dm3] 3R_10173958_SNP [dm6]	T	A	3.483e^-4	0.767	INTRON CG12814
3R	16265064	3R_16265064_SNP [dm3] 3R_20439342_SNP [dm6]	C	A	3.487e^-4	0.767	INTRON Gfrl
3L	10222980	3L_10222980_SNP [dm3] 3L_10229880_SNP [dm6]	G	C	3.495e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	2983251	2L_2983251_SNP [dm3] 2L_2983251_SNP [dm6]	A	G	3.495e^-4	0.767	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17371559	3R_17371559_SNP [dm3] 3R_21545837_SNP [dm6]	A	T	3.499e^-4	0.767	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6125024	2L_6125024_SNP [dm3] 2L_6125024_SNP [dm6]	G	A	3.500e^-4	0.767	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	13438481	X_13438481_SNP [dm3] X_13544448_SNP [dm6]	T	C	3.503e^-4	0.767	INTRON Cpr12A
3R	26036246	3R_26036246_SNP [dm3] 3R_30210524_SNP [dm6]	T	A	3.506e^-4	0.767	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	3048856	2L_3048856_INS [dm3] 2L_3048856_INS [dm6]	A	AA	3.509e^-4	0.767	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10538189	X_10538189_SNP [dm3] X_10644156_SNP [dm6]	T	G	3.514e^-4	0.767	INTRON X11Lbeta
X	6429361	X_6429361_SNP [dm3] X_6535328_SNP [dm6]	A	G	3.517e^-4	0.767	INTRON dx	TF binding site BDTNP1_TFBS_dl
3R	10823239	3R_10823239_SNP [dm3] 3R_14997517_SNP [dm6]	A	G	3.529e^-4	0.767	INTERGENIC
2L	8973615	2L_8973615_SNP [dm3] 2L_8973615_SNP [dm6]	T	G	3.530e^-4	0.767	INTRON CG9541
3R	18102984	3R_18102984_SNP [dm3] 3R_22277262_SNP [dm6]	T	A	3.534e^-4	0.767	INTRON SKIP
3R	16374084	3R_16374084_SNP [dm3] 3R_20548362_SNP [dm6]	T	C	3.545e^-4	0.767	INTRON Stat92E	TF binding site mE1_TFBS_cad
2L	16541516	2L_16541516_SNP [dm3] 2L_16541516_SNP [dm6]	T	A	3.546e^-4	0.767	INTERGENIC
3L	10923417	3L_10923417_SNP [dm3] 3L_10930317_SNP [dm6]	C	A	3.546e^-4	0.767	INTERGENIC
3R	26855141	3R_26855141_INS [dm3] 3R_31029419_INS [dm6]	G	GG	3.550e^-4	0.767	INTERGENIC
2L	13500293	2L_13500293_SNP [dm3] 2L_13500293_SNP [dm6]	C	T	3.554e^-4	0.767	UTR_3_PRIME CG42784 DOWNSTREAM B4	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25301056	3R_25301056_SNP [dm3] 3R_29475334_SNP [dm6]	C	T	3.560e^-4	0.767	INTRON Ptp99A
3L	8577848	3L_8577848_SNP [dm3] 3L_8584748_SNP [dm6]	A	T	3.564e^-4	0.767	UPSTREAM CG43078 INTRON CG43078
3R	778059	3R_778059_SNP [dm3] 3R_4952337_SNP [dm6]	T	A	3.566e^-4	0.767	INTRON UbcD6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11485602	3L_11485602_SNP [dm3] 3L_11492502_SNP [dm6]	G	T	3.568e^-4	0.767	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10264109	2L_10264109_SNP [dm3] 2L_10264109_SNP [dm6]	C	T	3.573e^-4	0.767	UPSTREAM CG18619 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10814415	2R_10814415_SNP [dm3] 2R_14926910_SNP [dm6]	A	G	3.579e^-4	0.767	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7777365	3R_7777365_SNP [dm3] 3R_11951643_SNP [dm6]	T	A	3.581e^-4	0.767	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14751943	2L_14751943_SNP [dm3] 2L_14751943_SNP [dm6]	A	T	3.581e^-4	0.767	INTERGENIC
2L	3048941	2L_3048941_SNP [dm3] 2L_3048941_SNP [dm6]	T	G	3.590e^-4	0.767	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10966769	3R_10966769_SNP [dm3] 3R_15141047_SNP [dm6]	C	T	3.605e^-4	0.767	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10953729	3R_10953729_SNP [dm3] 3R_15128007_SNP [dm6]	C	T	3.608e^-4	0.767	INTRON CG42788
2R	14439623	2R_14439623_SNP [dm3] 2R_18552118_SNP [dm6]	T	C	3.612e^-4	0.767	INTERGENIC
2L	5841414	2L_5841414_SNP [dm3] 2L_5841414_SNP [dm6]	C	T	3.618e^-4	0.767	INTRON TrissinR
X	14813915	X_14813915_SNP [dm3] X_14919882_SNP [dm6]	G	T	3.619e^-4	0.767	NON_SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
2R	6373624	2R_6373624_SNP [dm3] 2R_10486119_SNP [dm6]	G	A	3.621e^-4	0.767	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3095858	2R_3095858_SNP [dm3] 2R_7208353_SNP [dm6]	A	T	3.624e^-4	0.767	INTRON pk
2R	18500358	2R_18500358_SNP [dm3] 2R_22612853_SNP [dm6]	T	G	3.631e^-4	0.767	INTRON CG4329
3R	26855004	3R_26855004_SNP [dm3] 3R_31029282_SNP [dm6]	A	T	3.637e^-4	0.767	INTERGENIC
3L	11486366	3L_11486366_SNP [dm3] 3L_11493266_SNP [dm6]	G	A	3.642e^-4	0.767	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4722655	2L_4722655_SNP [dm3] 2L_4722655_SNP [dm6]	A	T	3.643e^-4	0.767	DOWNSTREAM CG34351 INTERGENIC
2R	3095840	2R_3095840_SNP [dm3] 2R_7208335_SNP [dm6]	T	G	3.644e^-4	0.767	INTRON pk
2L	6124968	2L_6124968_SNP [dm3] 2L_6124968_SNP [dm6]	G	A	3.647e^-4	0.767	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	18120067	2R_18120067_SNP [dm3] 2R_22232562_SNP [dm6]	G	A	3.647e^-4	0.767	INTERGENIC
X	14808778	X_14808778_DEL [dm3] X_14914745_DEL [dm6]	TAA	T	3.648e^-4	0.767	UPSTREAM CG12398 INTRON Flo2
2R	16276081	2R_16276081_SNP [dm3] 2R_20388576_SNP [dm6]	T	C	3.651e^-4	0.767	INTERGENIC
3R	23233448	3R_23233448_SNP [dm3] 3R_27407726_SNP [dm6]	T	C	3.651e^-4	0.767	INTRON side
3R	13351169	3R_13351169_SNP [dm3] 3R_17525447_SNP [dm6]	A	C	3.655e^-4	0.767	INTERGENIC
3R	26469737	3R_26469737_SNP [dm3] 3R_30644015_SNP [dm6]	A	T	3.657e^-4	0.767	INTRON CG31013
2R	16456538	2R_16456538_SNP [dm3] 2R_20569033_SNP [dm6]	G	T	3.658e^-4	0.767	INTRON qsm
X	11560993	X_11560993_SNP [dm3] X_11666960_SNP [dm6]	T	C	3.658e^-4	0.767	SYNONYMOUS_CODING Ptp10D
2L	13500433	2L_13500433_SNP [dm3] 2L_13500433_SNP [dm6]	A	G	3.670e^-4	0.767	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6373451	2R_6373451_SNP [dm3] 2R_10485946_SNP [dm6]	T	C	3.678e^-4	0.767	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	13688457	2L_13688457_DEL [dm3] 2L_13688457_DEL [dm6]	TGT	T	3.683e^-4	0.767	INTRON CG31814
2R	8484598	2R_8484598_SNP [dm3] 2R_12597093_SNP [dm6]	G	A	3.687e^-4	0.767	INTRON Amph
X	4840672	X_4840672_SNP [dm3] X_4946639_SNP [dm6]	T	C	3.690e^-4	0.767	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20878395	X_20878395_SNP [dm3] X_21007368_SNP [dm6]	T	C	3.692e^-4	0.767	INTERGENIC
3L	10669623	3L_10669623_SNP [dm3] 3L_10676523_SNP [dm6]	A	G	3.693e^-4	0.767	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26757526	3R_26757526_SNP [dm3] 3R_30931804_SNP [dm6]	A	T	3.698e^-4	0.767	INTERGENIC
3R	15098578	3R_15098578_SNP [dm3] 3R_19272856_SNP [dm6]	T	C	3.699e^-4	0.767	INTERGENIC
3R	16826621	3R_16826621_SNP [dm3] 3R_21000899_SNP [dm6]	A	G	3.703e^-4	0.767	INTRON Calx
3L	12597197	3L_12597197_SNP [dm3] 3L_12604097_SNP [dm6]	A	G	3.720e^-4	0.767	INTERGENIC
2L	17996771	2L_17996771_SNP [dm3] 2L_17996771_SNP [dm6]	T	C	3.721e^-4	0.767	INTERGENIC
3R	25304834	3R_25304834_SNP [dm3] 3R_29479112_SNP [dm6]	A	T	3.725e^-4	0.767	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_cad
X	14818173	X_14818173_SNP [dm3] X_14924140_SNP [dm6]	C	T	3.731e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
X	14818185	X_14818185_SNP [dm3] X_14924152_SNP [dm6]	T	C	3.731e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
2L	13880269	2L_13880269_SNP [dm3] 2L_13880269_SNP [dm6]	A	C	3.734e^-4	0.767	INTRON CenG1A
2R	8456951	2R_8456951_SNP [dm3] 2R_12569446_SNP [dm6]	G	A	3.739e^-4	0.767	UPSTREAM stil DOWNSTREAM Cyp301a1 INTRON Ak6	TF binding site BDTNP1_TFBS_slp1
2R	14439830	2R_14439830_SNP [dm3] 2R_18552325_SNP [dm6]	G	C	3.751e^-4	0.767	INTERGENIC
2R	14439880	2R_14439880_SNP [dm3] 2R_18552375_SNP [dm6]	A	G	3.751e^-4	0.767	INTERGENIC
X	14814165	X_14814165_SNP [dm3] X_14920132_SNP [dm6]	G	A	3.753e^-4	0.767	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16716811	2R_16716811_SNP [dm3] 2R_20829306_SNP [dm6]	G	A	3.754e^-4	0.767	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21285405	3R_21285405_SNP [dm3] 3R_25459683_SNP [dm6]	C	A	3.754e^-4	0.767	INTRON Fur1
2R	13354351	2R_13354351_SNP [dm3] 2R_17466846_SNP [dm6]	T	C	3.755e^-4	0.767	SYNONYMOUS_CODING Tes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25197535	3R_25197535_SNP [dm3] 3R_29371813_SNP [dm6]	T	A	3.764e^-4	0.767	INTERGENIC
3R	6393866	3R_6393866_SNP [dm3] 3R_10568144_SNP [dm6]	C	T	3.765e^-4	0.767	INTRON hth	TF binding site mE1_TFBS_cnc
3L	15170829	3L_15170829_SNP [dm3] 3L_15177729_SNP [dm6]	C	T	3.767e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6373457	2R_6373457_SNP [dm3] 2R_10485952_SNP [dm6]	A	G	3.776e^-4	0.767	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	9773091	2L_9773091_SNP [dm3] 2L_9773091_SNP [dm6]	G	A	3.780e^-4	0.767	UPSTREAM ppk16 DOWNSTREAM ppk11 INTERGENIC
3R	19118487	3R_19118487_SNP [dm3] 3R_23292765_SNP [dm6]	C	T	3.781e^-4	0.767	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	14393618	X_14393618_SNP [dm3] X_14499585_SNP [dm6]	A	T	3.797e^-4	0.767	INTERGENIC
3R	6330889	3R_6330889_SNP [dm3] 3R_10505167_SNP [dm6]	A	C	3.797e^-4	0.767	INTERGENIC
X	6429376	X_6429376_SNP [dm3] X_6535343_SNP [dm6]	T	A	3.800e^-4	0.767	INTRON dx	TF binding site BDTNP1_TFBS_dl
2R	17205564	2R_17205564_INS [dm3] 2R_21318059_INS [dm6]	G	ATAATAAT	3.805e^-4	0.767	UTR_3_PRIME CG33655 INTRON CG9485
X	16082810	X_16082810_SNP [dm3] X_16188777_SNP [dm6]	G	A	3.807e^-4	0.767	INTERGENIC
2R	17134988	2R_17134988_SNP [dm3] 2R_21247483_SNP [dm6]	G	A	3.809e^-4	0.767	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	27264073	3R_27264073_SNP [dm3] 3R_31438351_SNP [dm6]	T	A	3.814e^-4	0.767	INTRON Gprk2
2L	975729	2L_975729_SNP [dm3] 2L_975729_SNP [dm6]	A	G	3.830e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	14366861	2L_14366861_SNP [dm3] 2L_14366861_SNP [dm6]	T	A	3.836e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17936393	2L_17936393_SNP [dm3] 2L_17936393_SNP [dm6]	T	G	3.836e^-4	0.767	INTERGENIC
2R	18026025	2R_18026025_SNP [dm3] 2R_22138520_SNP [dm6]	G	A	3.841e^-4	0.767	UPSTREAM CG11269 INTRON a
X	12602881	X_12602881_SNP [dm3] X_12708848_SNP [dm6]	G	A	3.842e^-4	0.767	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	22018449	2L_22018449_SNP [dm3] 2L_22018449_SNP [dm6]	T	G	3.843e^-4	0.767	UPSTREAM CR33987 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25365294	3R_25365294_SNP [dm3] 3R_29539572_SNP [dm6]	G	A	3.845e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18943084	2R_18943084_SNP [dm3] 2R_23055561_SNP [dm6]	A	G	3.850e^-4	0.767	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
X	5500935	X_5500935_SNP [dm3] X_5606902_SNP [dm6]	G	C	3.854e^-4	0.767	INTRON Vsx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23453448	3R_23453448_SNP [dm3] 3R_27627726_SNP [dm6]	C	G	3.856e^-4	0.767	INTRON Tusp
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	3.863e^-4	0.767	INTRON qsm
3R	10952253	3R_10952253_SNP [dm3] 3R_15126531_SNP [dm6]	G	A	3.864e^-4	0.767	INTRON CG42788
3R	23770401	3R_23770401_SNP [dm3] 3R_27944679_SNP [dm6]	A	G	3.869e^-4	0.767	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14818194	X_14818194_SNP [dm3] X_14924161_SNP [dm6]	T	C	3.873e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
3L	1727850	3L_1727850_SNP [dm3] 3L_1727850_SNP [dm6]	G	T	3.873e^-4	0.767	INTRON drpr	TF binding site BDTNP1_TFBS_twi
2L	21976107	2L_21976107_SNP [dm3] 2L_21976107_SNP [dm6]	A	G	3.880e^-4	0.767	INTERGENIC
2R	12014158	2R_12014158_SNP [dm3] 2R_16126653_SNP [dm6]	C	A	3.882e^-4	0.767	INTRON spin
3L	13111506	3L_13111506_SNP [dm3] 3L_13118406_SNP [dm6]	A	G	3.885e^-4	0.767	DOWNSTREAM trn INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11224000	3L_11224000_SNP [dm3] 3L_11230900_SNP [dm6]	A	C	3.893e^-4	0.767	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	14366852	2L_14366852_SNP [dm3] 2L_14366852_SNP [dm6]	A	C	3.896e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19930639	2L_19930639_SNP [dm3] 2L_19930639_SNP [dm6]	G	A	3.899e^-4	0.767	INTRON sick
3L	2964841	3L_2964841_SNP [dm3] 3L_2964841_SNP [dm6]	T	C	3.901e^-4	0.767	INTERGENIC
2R	13343100	2R_13343100_SNP [dm3] 2R_17455595_SNP [dm6]	T	G	3.903e^-4	0.767	NON_SYNONYMOUS_CODING CG10764 UPSTREAM robl DOWNSTREAM robls54B
2R	14439825	2R_14439825_SNP [dm3] 2R_18552320_SNP [dm6]	T	C	3.906e^-4	0.767	INTERGENIC
3L	3735622	3L_3735622_SNP [dm3] 3L_3735622_SNP [dm6]	C	A	3.911e^-4	0.767	INTRON CG32264
2L	20553425	2L_20553425_INS [dm3] 2L_20553425_INS [dm6]	A	AA	3.912e^-4	0.767	INTERGENIC
3R	18420118	3R_18420118_SNP [dm3] 3R_22594396_SNP [dm6]	A	T	3.913e^-4	0.767	INTRON Efa6
3R	9479706	3R_9479706_SNP [dm3] 3R_13653984_SNP [dm6]	T	C	3.923e^-4	0.767	UTR_3_PRIME rin DOWNSTREAM Rbp4
3R	21598946	3R_21598946_SNP [dm3] 3R_25773224_SNP [dm6]	A	G	3.926e^-4	0.767	DOWNSTREAM CG17198 & 1 other INTERGENIC
2L	20755305	2L_20755305_SNP [dm3] 2L_20755305_SNP [dm6]	A	T	3.926e^-4	0.767	DOWNSTREAM Ns4 INTRON CG9323
3R	13627028	3R_13627028_SNP [dm3] 3R_17801306_SNP [dm6]	A	G	3.931e^-4	0.767	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
X	6203785	X_6203785_SNP [dm3] X_6309752_SNP [dm6]	G	A	3.938e^-4	0.767	INTRON CG15894
3L	14270515	3L_14270515_SNP [dm3] 3L_14277415_SNP [dm6]	C	T	3.941e^-4	0.767	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3048949	2L_3048949_INS [dm3] 2L_3048949_INS [dm6]	A	AA	3.943e^-4	0.767	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8835602	2R_8835602_SNP [dm3] 2R_12948097_SNP [dm6]	T	G	3.948e^-4	0.767	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20575294	2L_20575294_SNP [dm3] 2L_20575294_SNP [dm6]	C	G	3.955e^-4	0.767	INTRON CR45347
3R	7126273	3R_7126273_SNP [dm3] 3R_11300551_SNP [dm6]	C	G	3.963e^-4	0.767	INTRON CR31386
2L	3291723	2L_3291723_SNP [dm3] 2L_3291723_SNP [dm6]	G	A	3.964e^-4	0.767	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2688024	2L_2688024_SNP [dm3] 2L_2688024_SNP [dm6]	C	T	3.979e^-4	0.767	INTRON CG31690
X	14808773	X_14808773_INS [dm3] X_14914740_INS [dm6]	G	TA	3.980e^-4	0.767	UPSTREAM CG12398 INTRON Flo2
3R	26853762	3R_26853762_SNP [dm3] 3R_31028040_SNP [dm6]	T	C	3.985e^-4	0.767	INTERGENIC
3L	10740286	3L_10740286_INS [dm3] 3L_10747186_INS [dm6]	T	TTT	3.986e^-4	0.767	INTERGENIC
X	14818190	X_14818190_SNP [dm3] X_14924157_SNP [dm6]	C	A	3.988e^-4	0.767	UPSTREAM CG9503 INTRON Flo2
3R	7137329	3R_7137329_SNP [dm3] 3R_11311607_SNP [dm6]	G	A	3.991e^-4	0.767	DOWNSTREAM CR45055 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	8577833	3L_8577833_SNP [dm3] 3L_8584733_SNP [dm6]	C	T	3.997e^-4	0.767	UPSTREAM CG43078 INTRON CG43078
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	4.001e^-4	0.767	UPSTREAM CG10597 INTERGENIC
3L	12585656	3L_12585656_SNP [dm3] 3L_12592556_SNP [dm6]	G	T	4.001e^-4	0.767	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10196177	2L_10196177_SNP [dm3] 2L_10196177_SNP [dm6]	T	A	4.016e^-4	0.767	INTRON Sur
2L	6111785	2L_6111785_SNP [dm3] 2L_6111785_SNP [dm6]	A	T	4.021e^-4	0.767	INTRON stai
2L	5861709	2L_5861709_SNP [dm3] 2L_5861709_SNP [dm6]	G	T	4.023e^-4	0.767	INTRON rau	TF binding site mE1_TFBS_cad
2R	8835215	2R_8835215_SNP [dm3] 2R_12947710_SNP [dm6]	C	T	4.025e^-4	0.767	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13500572	2L_13500572_SNP [dm3] 2L_13500572_SNP [dm6]	C	T	4.025e^-4	0.767	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6017443	2R_6017443_SNP [dm3] 2R_10129938_SNP [dm6]	T	C	4.032e^-4	0.767	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13921795	2L_13921795_SNP [dm3] 2L_13921795_SNP [dm6]	G	A	4.034e^-4	0.767	UTR_3_PRIME CG16886 INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10904167	3R_10904167_SNP [dm3] 3R_15078445_SNP [dm6]	T	G	4.040e^-4	0.767	DOWNSTREAM CG6974 & 1 other INTERGENIC
3R	19887403	3R_19887403_SNP [dm3] 3R_24061681_SNP [dm6]	C	A	4.041e^-4	0.767	INTRON SMC1
2R	10811124	2R_10811124_SNP [dm3] 2R_14923619_SNP [dm6]	G	A	4.043e^-4	0.767	INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	720730	3R_720730_INS [dm3] 3R_4895008_INS [dm6]	T	TT	4.044e^-4	0.767	INTERGENIC
2R	14935594	2R_14935594_SNP [dm3] 2R_19048089_SNP [dm6]	A	C	4.048e^-4	0.767	INTERGENIC
3L	15871513	3L_15871513_SNP [dm3] 3L_15878413_SNP [dm6]	T	G	4.053e^-4	0.767	INTRON pHCl
3L	14337520	3L_14337520_SNP [dm3] 3L_14344420_SNP [dm6]	G	A	4.054e^-4	0.767	INTRON fz
2L	14366854	2L_14366854_SNP [dm3] 2L_14366854_SNP [dm6]	T	C	4.055e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14366857	2L_14366857_MNP [dm3] 2L_14366857_MNP [dm6]	CAT	TTA	4.055e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14366862	2L_14366862_SNP [dm3] 2L_14366862_SNP [dm6]	A	T	4.055e^-4	0.767	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6125009	2L_6125009_SNP [dm3] 2L_6125009_SNP [dm6]	T	A	4.057e^-4	0.767	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	15308444	3L_15308444_SNP [dm3] 3L_15315344_SNP [dm6]	T	G	4.060e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	26036249	3R_26036249_SNP [dm3] 3R_30210527_SNP [dm6]	G	C	4.061e^-4	0.767	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	8313268	2L_8313268_SNP [dm3] 2L_8313268_SNP [dm6]	G	A	4.063e^-4	0.767	SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18913241	2L_18913241_SNP [dm3] 2L_18913241_SNP [dm6]	G	A	4.068e^-4	0.767	INTERGENIC
3R	7790277	3R_7790277_SNP [dm3] 3R_11964555_SNP [dm6]	T	G	4.088e^-4	0.768	NON_SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo
2R	14439821	2R_14439821_SNP [dm3] 2R_18552316_SNP [dm6]	G	A	4.097e^-4	0.768	INTERGENIC
3R	20796225	3R_20796225_SNP [dm3] 3R_24970503_SNP [dm6]	T	C	4.097e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16646747	3R_16646747_SNP [dm3] 3R_20821025_SNP [dm6]	T	C	4.101e^-4	0.768	INTRON CG17271
2R	2856054	2R_2856054_SNP [dm3] 2R_6968549_SNP [dm6]	G	A	4.107e^-4	0.768	INTRON mim & 1 other

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.989e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02858

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.8868	0.0527

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2144 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	21691827	2L_21691827_SNP [dm3] 2L_21691827_SNP [dm6]	G	A	3.075e^-7	0.577	INTRON CG31619
3R	25482384	3R_25482384_DEL [dm3] 3R_29656662_DEL [dm6]	GG	G	1.282e^-6	0.792	INTRON Dop1R2
2L	21702529	2L_21702529_INS [dm3] 2L_21702529_INS [dm6]	A	AAACAGCCACCAAA...	1.559e^-6	0.792	INTRON CG31619
3R	26518013	3R_26518013_SNP [dm3] 3R_30692291_SNP [dm6]	G	A	1.688e^-6	0.792	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	2.918e^-6	0.81	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	20016162	2R_20016162_SNP [dm3] 2R_24128639_SNP [dm6]	T	A	3.728e^-6	0.81	INTRON tamo	TF binding site mE1_TFBS_chinmo
3L	16881379	3L_16881379_SNP [dm3] 3L_16888279_SNP [dm6]	T	C	4.256e^-6	0.81	INTRON Lmpt
3R	22935949	3R_22935949_SNP [dm3] 3R_27110227_SNP [dm6]	T	C	4.439e^-6	0.81	SYNONYMOUS_CODING gb EXON CR45209
X	9712715	X_9712715_INS [dm3] X_9818682_INS [dm6]	A	AG	4.563e^-6	0.81	INTRON CG32698
3R	25116732	3R_25116732_SNP [dm3] 3R_29291010_SNP [dm6]	A	T	6.077e^-6	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22936285	3R_22936285_SNP [dm3] 3R_27110563_SNP [dm6]	T	C	6.657e^-6	0.81	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14638071	X_14638071_SNP [dm3] X_14744038_SNP [dm6]	A	T	6.808e^-6	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11214218	3L_11214218_DEL [dm3] 3L_11221118_DEL [dm6]	ATA	A	1.044e^-5	0.81	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	21688676	2L_21688676_SNP [dm3] 2L_21688676_SNP [dm6]	C	A	1.102e^-5	0.81	INTRON CG31619
3L	16236586	3L_16236586_SNP [dm3] 3L_16243486_SNP [dm6]	C	T	1.135e^-5	0.81	INTERGENIC
X	3071891	X_3071891_SNP [dm3] X_3177858_SNP [dm6]	G	A	1.162e^-5	0.81	INTRON dnc
2R	20019322	2R_20019322_SNP [dm3] 2R_24131799_SNP [dm6]	C	T	1.235e^-5	0.81	UTR_5_PRIME tamo INTRON tamo
2R	16760728	2R_16760728_SNP [dm3] 2R_20873223_SNP [dm6]	A	C	1.239e^-5	0.81	INTRON Ipk1	TF binding site mE1_TFBS_cad
2L	12135047	2L_12135047_SNP [dm3] 2L_12135047_SNP [dm6]	T	C	1.293e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18291056	2R_18291056_SNP [dm3] 2R_22403551_SNP [dm6]	T	C	1.400e^-5	0.81	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12135110	2L_12135110_SNP [dm3] 2L_12135110_SNP [dm6]	C	A	1.413e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	20574803	3R_20574803_SNP [dm3] 3R_24749081_SNP [dm6]	T	A	1.423e^-5	0.81	UTR_3_PRIME tok UPSTREAM tld	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26517895	3R_26517895_SNP [dm3] 3R_30692173_SNP [dm6]	G	A	1.424e^-5	0.81	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21906626	3R_21906626_SNP [dm3] 3R_26080904_SNP [dm6]	G	T	1.481e^-5	0.81	INTRON dys	TF binding site mE1_TFBS_cad
3R	25116723	3R_25116723_SNP [dm3] 3R_29291001_SNP [dm6]	A	G	1.612e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23305996	3R_23305996_SNP [dm3] 3R_27480274_SNP [dm6]	G	A	1.637e^-5	0.81	SYNONYMOUS_CODING Cyp6a18
3L	15953882	3L_15953882_SNP [dm3] 3L_15960782_SNP [dm6]	C	T	1.641e^-5	0.81	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
3R	25137632	3R_25137632_SNP [dm3] 3R_29311910_SNP [dm6]	C	G	1.649e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14931678	3R_14931678_SNP [dm3] 3R_19105956_SNP [dm6]	C	G	1.759e^-5	0.81	INTRON CG6040
3R	25116733	3R_25116733_SNP [dm3] 3R_29291011_SNP [dm6]	A	G	1.768e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20967759	2L_20967759_SNP [dm3] 2L_20967759_SNP [dm6]	G	T	1.803e^-5	0.81	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20013553	2R_20013553_SNP [dm3] 2R_24126030_SNP [dm6]	G	A	1.810e^-5	0.81	SYNONYMOUS_CODING CG43775 UTR_5_PRIME CG43776 & 1 other UPSTREAM CG43776 & 1 other DOWNSTREAM tamo	TF binding site mE1_TFBS_cad
X	4415761	X_4415761_SNP [dm3] X_4521728_SNP [dm6]	T	A	2.055e^-5	0.81	INTRON CR32773
3R	23905609	3R_23905609_SNP [dm3] 3R_28079887_SNP [dm6]	T	C	2.106e^-5	0.81	INTRON CG34362
3R	25033851	3R_25033851_SNP [dm3] 3R_29208129_SNP [dm6]	T	C	2.159e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19602364	3R_19602364_SNP [dm3] 3R_23776642_SNP [dm6]	G	A	2.171e^-5	0.81	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2698673	3R_2698673_SNP [dm3] 3R_6872951_SNP [dm6]	G	T	2.228e^-5	0.81	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	25157933	3R_25157933_SNP [dm3] 3R_29332211_SNP [dm6]	A	T	2.282e^-5	0.81	INTERGENIC
X	4415871	X_4415871_SNP [dm3] X_4521838_SNP [dm6]	G	T	2.392e^-5	0.81	INTRON CR32773
3R	24633437	3R_24633437_SNP [dm3] 3R_28807715_SNP [dm6]	C	T	2.392e^-5	0.81	DOWNSTREAM wdn & 1 other INTERGENIC
3L	3015082	3L_3015082_SNP [dm3] 3L_3015082_SNP [dm6]	G	A	2.438e^-5	0.81	SYNONYMOUS_CODING CG32488
3L	16628363	3L_16628363_SNP [dm3] 3L_16635263_SNP [dm6]	T	C	2.489e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16628340	3L_16628340_SNP [dm3] 3L_16635240_SNP [dm6]	A	T	2.509e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8839017	2R_8839017_SNP [dm3] 2R_12951512_SNP [dm6]	C	T	2.630e^-5	0.81	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
X	21294037	X_21294037_SNP [dm3] X_21423010_SNP [dm6]	A	T	2.636e^-5	0.81	UTR_3_PRIME CG42343
3L	4269409	3L_4269409_SNP [dm3] 3L_4269409_SNP [dm6]	A	G	2.686e^-5	0.81	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14153758	3L_14153758_SNP [dm3] 3L_14160658_SNP [dm6]	A	T	2.732e^-5	0.81	INTERGENIC	regulatory region REDfly_CRMs
2R	8839933	2R_8839933_SNP [dm3] 2R_12952428_SNP [dm6]	C	T	2.828e^-5	0.81	UPSTREAM CG13321 & 2 others INTERGENIC
3R	22598189	3R_22598189_SNP [dm3] 3R_26772467_SNP [dm6]	A	C	2.922e^-5	0.81	INTERGENIC
2R	6082187	2R_6082187_SNP [dm3] 2R_10194682_SNP [dm6]	A	G	2.967e^-5	0.81	INTERGENIC
2L	21708060	2L_21708060_SNP [dm3] 2L_21708060_SNP [dm6]	T	A	3.103e^-5	0.81	INTRON CG31619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	4415866	X_4415866_SNP [dm3] X_4521833_SNP [dm6]	T	C	3.182e^-5	0.81	INTRON CR32773
3R	24954360	3R_24954360_DEL [dm3] 3R_29128638_DEL [dm6]	AAAAAGTA	A	3.190e^-5	0.81	UTR_3_PRIME dgt6 DOWNSTREAM CG11880
3R	22574022	3R_22574022_SNP [dm3] 3R_26748300_SNP [dm6]	C	T	3.215e^-5	0.81	INTERGENIC
3R	19602373	3R_19602373_SNP [dm3] 3R_23776651_SNP [dm6]	A	G	3.226e^-5	0.81	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21634357	2L_21634357_SNP [dm3] 2L_21634357_SNP [dm6]	T	C	3.227e^-5	0.81	INTRON Ac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8613417	3R_8613417_SNP [dm3] 3R_12787695_SNP [dm6]	C	T	3.261e^-5	0.81	INTERGENIC
X	14638047	X_14638047_SNP [dm3] X_14744014_SNP [dm6]	T	G	3.266e^-5	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10340470	X_10340470_INS [dm3] X_10446437_INS [dm6]	T	TATTTTT	3.290e^-5	0.81	INTRON CG32683
3R	21903301	3R_21903301_SNP [dm3] 3R_26077579_SNP [dm6]	A	C	3.375e^-5	0.81	NON_SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad
3L	16628321	3L_16628321_SNP [dm3] 3L_16635221_SNP [dm6]	C	T	3.426e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8684478	2L_8684478_SNP [dm3] 2L_8684478_SNP [dm6]	A	T	3.583e^-5	0.81	UPSTREAM tRNA:CR31888 & 1 other DOWNSTREAM tRNA:CR31890 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20026057	2R_20026057_SNP [dm3] 2R_24138534_SNP [dm6]	T	G	3.584e^-5	0.81	UPSTREAM CR44826 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
3L	2721819	3L_2721819_SNP [dm3] 3L_2721819_SNP [dm6]	C	A	3.603e^-5	0.81	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22598191	3R_22598191_SNP [dm3] 3R_26772469_SNP [dm6]	G	T	3.666e^-5	0.81	INTERGENIC
2R	19295729	2R_19295729_SNP [dm3] 2R_23408206_SNP [dm6]	A	G	3.670e^-5	0.81	INTERGENIC
3R	25110823	3R_25110823_SNP [dm3] 3R_29285101_SNP [dm6]	G	A	3.676e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	3.715e^-5	0.81	INTRON pHCl
X	14638048	X_14638048_SNP [dm3] X_14744015_SNP [dm6]	G	A	3.719e^-5	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3872751	3L_3872751_SNP [dm3] 3L_3872751_SNP [dm6]	A	T	3.792e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	21970641	2L_21970641_SNP [dm3] 2L_21970641_SNP [dm6]	C	G	3.809e^-5	0.81	INTERGENIC
2L	19825452	2L_19825452_SNP [dm3] 2L_19825452_SNP [dm6]	T	C	3.833e^-5	0.81	INTRON sick
3R	13627028	3R_13627028_SNP [dm3] 3R_17801306_SNP [dm6]	A	G	3.836e^-5	0.81	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
2L	21970644	2L_21970644_SNP [dm3] 2L_21970644_SNP [dm6]	A	G	3.870e^-5	0.81	INTERGENIC
3R	18654837	3R_18654837_SNP [dm3] 3R_22829115_SNP [dm6]	C	A	3.906e^-5	0.81	INTERGENIC
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	3.959e^-5	0.81	INTRON CG44153 & 1 other
X	9405065	X_9405065_DEL [dm3] X_9511032_DEL [dm6]	AA	A	4.008e^-5	0.81	UPSTREAM CG34028 INTRON CG32700
3R	8479936	3R_8479936_SNP [dm3] 3R_12654214_SNP [dm6]	G	A	4.065e^-5	0.81	UPSTREAM CG6225 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11224079	3L_11224079_INS [dm3] 3L_11230979_INS [dm6]	GG	TAAATA	4.082e^-5	0.81	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	19072292	3R_19072292_SNP [dm3] 3R_23246570_SNP [dm6]	T	C	4.214e^-5	0.81	INTRON CG4467
2L	13821096	2L_13821096_SNP [dm3] 2L_13821096_SNP [dm6]	T	C	4.218e^-5	0.81	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20016407	2R_20016407_SNP [dm3] 2R_24128884_SNP [dm6]	A	T	4.228e^-5	0.81	SYNONYMOUS_CODING tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7188830	2L_7188830_SNP [dm3] 2L_7188830_SNP [dm6]	G	C	4.259e^-5	0.81	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20015164	2R_20015164_SNP [dm3] 2R_24127641_SNP [dm6]	C	G	4.292e^-5	0.81	UTR_3_PRIME tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14883745	2R_14883745_SNP [dm3] 2R_18996240_SNP [dm6]	A	G	4.448e^-5	0.81	INTRON tn
2R	20019256	2R_20019256_SNP [dm3] 2R_24131733_SNP [dm6]	G	A	4.524e^-5	0.81	UTR_5_PRIME tamo INTRON tamo
3L	4069027	3L_4069027_SNP [dm3] 3L_4069027_SNP [dm6]	C	A	4.610e^-5	0.81	UPSTREAM CG32259 INTRON wit
3R	25023806	3R_25023806_SNP [dm3] 3R_29198084_SNP [dm6]	A	G	4.650e^-5	0.81	INTRON CG14515	TF binding site mE1_TFBS_chinmo
3R	22987378	3R_22987378_SNP [dm3] 3R_27161656_SNP [dm6]	C	A	4.732e^-5	0.81	INTRON CG5909
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	4.754e^-5	0.81	INTRON Gfrl
3R	26493518	3R_26493518_INS [dm3] 3R_30667796_INS [dm6]	C	CC	4.760e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26106610	3R_26106610_SNP [dm3] 3R_30280888_SNP [dm6]	C	T	4.777e^-5	0.81	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22598218	3R_22598218_SNP [dm3] 3R_26772496_SNP [dm6]	A	T	4.778e^-5	0.81	INTERGENIC
3R	25584845	3R_25584845_SNP [dm3] 3R_29759123_SNP [dm6]	A	G	4.792e^-5	0.81	UPSTREAM CR44953 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4415865	X_4415865_SNP [dm3] X_4521832_SNP [dm6]	A	C	4.853e^-5	0.81	INTRON CR32773
3R	24605408	3R_24605408_DEL [dm3] 3R_28779686_DEL [dm6]	CT	A	4.914e^-5	0.81	INTERGENIC
X	4415773	X_4415773_SNP [dm3] X_4521740_SNP [dm6]	G	A	4.923e^-5	0.81	INTRON CR32773
3L	15954112	3L_15954112_SNP [dm3] 3L_15961012_SNP [dm6]	G	A	4.946e^-5	0.81	SYNONYMOUS_CODING l_3_72Ab DOWNSTREAM CG17032	TF binding site mE1_TFBS_cad
3L	15305828	3L_15305828_SNP [dm3] 3L_15312728_SNP [dm6]	A	T	5.009e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26106401	3R_26106401_SNP [dm3] 3R_30280679_SNP [dm6]	A	G	5.017e^-5	0.81	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2598515	3L_2598515_SNP [dm3] 3L_2598515_SNP [dm6]	T	G	5.033e^-5	0.81	NON_SYNONYMOUS_CODING CG12182 UPSTREAM CG16985
3R	22954357	3R_22954357_SNP [dm3] 3R_27128635_SNP [dm6]	T	C	5.111e^-5	0.81	SPLICE_SITE_REGION CG6051 INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15901216	3L_15901216_SNP [dm3] 3L_15908116_SNP [dm6]	G	A	5.148e^-5	0.81	INTRON sff
3L	3872673	3L_3872673_SNP [dm3] 3L_3872673_SNP [dm6]	T	C	5.180e^-5	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	4503091	2L_4503091_SNP [dm3] 2L_4503091_SNP [dm6]	T	G	5.284e^-5	0.81	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22598159	3R_22598159_SNP [dm3] 3R_26772437_SNP [dm6]	A	T	5.286e^-5	0.81	INTERGENIC
3L	16733887	3L_16733887_SNP [dm3] 3L_16740787_SNP [dm6]	G	A	5.305e^-5	0.81	INTERGENIC
3R	22575120	3R_22575120_SNP [dm3] 3R_26749398_SNP [dm6]	G	T	5.319e^-5	0.81	INTERGENIC
3L	16733934	3L_16733934_SNP [dm3] 3L_16740834_SNP [dm6]	C	G	5.321e^-5	0.81	INTERGENIC
3R	24605406	3R_24605406_SNP [dm3] 3R_28779684_SNP [dm6]	A	G	5.421e^-5	0.81	INTERGENIC
3L	3013666	3L_3013666_SNP [dm3] 3L_3013666_SNP [dm6]	C	T	5.426e^-5	0.81	INTERGENIC
2R	17926823	2R_17926823_SNP [dm3] 2R_22039318_SNP [dm6]	A	G	5.442e^-5	0.81	INTRON CG34370
3R	22936312	3R_22936312_SNP [dm3] 3R_27110590_SNP [dm6]	G	A	5.504e^-5	0.81	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26766966	3R_26766966_SNP [dm3] 3R_30941244_SNP [dm6]	C	T	5.544e^-5	0.81	INTERGENIC
3R	22575110	3R_22575110_SNP [dm3] 3R_26749388_SNP [dm6]	G	A	5.644e^-5	0.81	INTERGENIC
2L	5868800	2L_5868800_SNP [dm3] 2L_5868800_SNP [dm6]	T	C	5.877e^-5	0.81	INTRON rau
2R	4830221	2R_4830221_SNP [dm3] 2R_8942716_SNP [dm6]	G	A	5.883e^-5	0.81	UPSTREAM CR44274 DOWNSTREAM CR44273 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21383500	3R_21383500_SNP [dm3] 3R_25557778_SNP [dm6]	A	T	5.901e^-5	0.81	INTRON msi
2R	20026076	2R_20026076_SNP [dm3] 2R_24138553_SNP [dm6]	T	G	5.905e^-5	0.81	UPSTREAM CR44826 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
3L	16628359	3L_16628359_SNP [dm3] 3L_16635259_SNP [dm6]	C	A	5.933e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	5.947e^-5	0.81	INTERGENIC
3R	8715220	3R_8715220_SNP [dm3] 3R_12889498_SNP [dm6]	T	A	5.955e^-5	0.81	INTERGENIC
3L	15305832	3L_15305832_SNP [dm3] 3L_15312732_SNP [dm6]	T	A	6.016e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14931714	3R_14931714_SNP [dm3] 3R_19105992_SNP [dm6]	A	T	6.048e^-5	0.81	INTRON CG6040
3L	3558527	3L_3558527_SNP [dm3] 3L_3558527_SNP [dm6]	C	T	6.078e^-5	0.81	INTRON Eip63E
2L	4463080	2L_4463080_SNP [dm3] 2L_4463080_SNP [dm6]	G	T	6.107e^-5	0.81	UTR_5_PRIME CG15443 UPSTREAM CG15436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14443104	2R_14443104_SNP [dm3] 2R_18555599_SNP [dm6]	T	C	6.133e^-5	0.81	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4004531	3L_4004531_SNP [dm3] 3L_4004531_SNP [dm6]	C	T	6.159e^-5	0.81	SYNONYMOUS_CODING CG14985 UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad
3L	16628309	3L_16628309_SNP [dm3] 3L_16635209_SNP [dm6]	T	G	6.411e^-5	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14879112	2R_14879112_SNP [dm3] 2R_18991607_SNP [dm6]	A	G	6.442e^-5	0.81	INTRON tn
2R	14879118	2R_14879118_SNP [dm3] 2R_18991613_SNP [dm6]	C	T	6.442e^-5	0.81	INTRON tn
X	9429308	X_9429308_SNP [dm3] X_9535275_SNP [dm6]	G	T	6.467e^-5	0.81	DOWNSTREAM CG34026 INTRON CG32700
X	14638053	X_14638053_SNP [dm3] X_14744020_SNP [dm6]	T	A	6.498e^-5	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9405042	X_9405042_SNP [dm3] X_9511009_SNP [dm6]	A	G	6.545e^-5	0.81	UPSTREAM CG34028 INTRON CG32700
3R	21748315	3R_21748315_SNP [dm3] 3R_25922593_SNP [dm6]	A	C	6.554e^-5	0.81	UTR_5_PRIME CG14546 DOWNSTREAM CCAP-R
2R	20013509	2R_20013509_SNP [dm3] 2R_24125986_SNP [dm6]	T	C	6.606e^-5	0.81	UPSTREAM CG43776 & 1 other DOWNSTREAM tamo INTRON CG43775 & 2 others	TF binding site mE1_TFBS_cad
X	7574581	X_7574581_SNP [dm3] X_7680548_SNP [dm6]	G	A	6.644e^-5	0.81	UPSTREAM CR45667 & 1 other DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16733947	3L_16733947_SNP [dm3] 3L_16740847_SNP [dm6]	G	T	6.692e^-5	0.81	INTERGENIC
3R	24758933	3R_24758933_SNP [dm3] 3R_28933211_SNP [dm6]	G	A	6.858e^-5	0.81	INTRON CG14521
2R	14882405	2R_14882405_SNP [dm3] 2R_18994900_SNP [dm6]	C	A	6.887e^-5	0.81	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	14172066	2R_14172066_SNP [dm3] 2R_18284561_SNP [dm6]	T	G	6.896e^-5	0.81	DOWNSTREAM sbb INTRON sbb	TF binding site mE1_TFBS_cad
3R	22595136	3R_22595136_SNP [dm3] 3R_26769414_SNP [dm6]	C	G	6.923e^-5	0.81	EXON CR45563
3R	25025473	3R_25025473_SNP [dm3] 3R_29199751_SNP [dm6]	C	T	6.959e^-5	0.81	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14178286	2L_14178286_SNP [dm3] 2L_14178286_SNP [dm6]	A	G	6.985e^-5	0.81	INTRON CG43333
2R	20021221	2R_20021221_DEL [dm3] 2R_24133698_DEL [dm6]	TAA	T	7.107e^-5	0.81	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8498024	2R_8498024_SNP [dm3] 2R_12610519_SNP [dm6]	T	G	7.113e^-5	0.81	INTRON Amph	TF binding site mE1_TFBS_HSA
2R	2852099	2R_2852099_SNP [dm3] 2R_6964594_SNP [dm6]	A	C	7.124e^-5	0.81	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22919867	3R_22919867_SNP [dm3] 3R_27094145_SNP [dm6]	T	C	7.192e^-5	0.81	UTR_3_PRIME CG14258 UPSTREAM CG14259
3L	15953912	3L_15953912_SNP [dm3] 3L_15960812_SNP [dm6]	T	G	7.224e^-5	0.81	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
2R	17926849	2R_17926849_SNP [dm3] 2R_22039344_SNP [dm6]	G	A	7.231e^-5	0.81	INTRON CG34370
2L	17996916	2L_17996916_SNP [dm3] 2L_17996916_SNP [dm6]	G	C	7.235e^-5	0.81	INTERGENIC
2L	15388352	2L_15388352_SNP [dm3] 2L_15388352_SNP [dm6]	C	A	7.297e^-5	0.81	INTERGENIC
3R	25110818	3R_25110818_SNP [dm3] 3R_29285096_SNP [dm6]	G	A	7.301e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1071260	3L_1071260_DEL [dm3] 3L_1071260_DEL [dm6]	CTTCGCTCTGC...	C	7.335e^-5	0.81	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3R	10955487	3R_10955487_SNP [dm3] 3R_15129765_SNP [dm6]	T	G	7.348e^-5	0.81	DOWNSTREAM mir-2493 INTRON CG42788
3R	25023188	3R_25023188_SNP [dm3] 3R_29197466_SNP [dm6]	G	A	7.357e^-5	0.81	UPSTREAM CG14515 INTERGENIC
2L	21076243	2L_21076243_SNP [dm3] 2L_21076243_SNP [dm6]	C	T	7.364e^-5	0.81	INTRON tadr
3L	14257160	3L_14257160_SNP [dm3] 3L_14264060_SNP [dm6]	T	A	7.478e^-5	0.81	INTERGENIC
2L	2340428	2L_2340428_SNP [dm3] 2L_2340428_SNP [dm6]	T	G	7.531e^-5	0.81	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23306013	3R_23306013_SNP [dm3] 3R_27480291_SNP [dm6]	A	G	7.539e^-5	0.81	UTR_3_PRIME Cyp6a18
2L	4503414	2L_4503414_SNP [dm3] 2L_4503414_SNP [dm6]	T	A	7.596e^-5	0.81	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16935169	2R_16935169_SNP [dm3] 2R_21047664_SNP [dm6]	C	T	7.733e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23424943	3R_23424943_SNP [dm3] 3R_27599221_SNP [dm6]	C	A	7.744e^-5	0.81	INTRON dsd
X	4415748	X_4415748_DEL [dm3] X_4521715_DEL [dm6]	TATGT	T	7.822e^-5	0.81	INTRON CR32773
3R	22598173	3R_22598173_SNP [dm3] 3R_26772451_SNP [dm6]	G	A	7.831e^-5	0.81	INTERGENIC
2L	4415376	2L_4415376_SNP [dm3] 2L_4415376_SNP [dm6]	G	A	7.863e^-5	0.81	INTRON CG15431
3L	11213153	3L_11213153_SNP [dm3] 3L_11220053_SNP [dm6]	A	C	7.899e^-5	0.81	INTRON CG42671
2L	5856643	2L_5856643_INS [dm3] 2L_5856643_INS [dm6]	G	GG	7.907e^-5	0.81	UTR_3_PRIME TrissinR
2R	14864481	2R_14864481_SNP [dm3] 2R_18976976_SNP [dm6]	T	C	7.941e^-5	0.81	UTR_3_PRIME Topors UPSTREAM CG18605
3R	10955560	3R_10955560_SNP [dm3] 3R_15129838_SNP [dm6]	A	G	7.963e^-5	0.81	DOWNSTREAM mir-2493 INTRON CG42788
2R	8840116	2R_8840116_SNP [dm3] 2R_12952611_SNP [dm6]	A	G	8.066e^-5	0.81	UPSTREAM CG13321 & 2 others INTERGENIC
3R	25110829	3R_25110829_SNP [dm3] 3R_29285107_SNP [dm6]	G	A	8.067e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15306031	3L_15306031_SNP [dm3] 3L_15312931_SNP [dm6]	C	T	8.079e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4394161	3L_4394161_SNP [dm3] 3L_4394161_SNP [dm6]	C	G	8.097e^-5	0.81	INTRON slow	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8682482	2L_8682482_SNP [dm3] 2L_8682482_SNP [dm6]	G	A	8.122e^-5	0.81	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31890	TF binding site mE1_TFBS_cad
2L	14119412	2L_14119412_SNP [dm3] 2L_14119412_SNP [dm6]	G	A	8.149e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	19295731	2R_19295731_SNP [dm3] 2R_23408208_SNP [dm6]	G	A	8.152e^-5	0.81	INTERGENIC
3R	22586508	3R_22586508_SNP [dm3] 3R_26760786_SNP [dm6]	A	G	8.166e^-5	0.81	INTERGENIC
3R	18378436	3R_18378436_SNP [dm3] 3R_22552714_SNP [dm6]	A	T	8.212e^-5	0.81	UPSTREAM bond & 1 other INTRON bond
2R	14119825	2R_14119825_SNP [dm3] 2R_18232320_SNP [dm6]	A	T	8.222e^-5	0.81	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10619661	X_10619661_SNP [dm3] X_10725628_SNP [dm6]	G	A	8.244e^-5	0.81	INTRON CG32676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26142961	3R_26142961_SNP [dm3] 3R_30317239_SNP [dm6]	A	T	8.258e^-5	0.81	INTRON hdc
3L	4029344	3L_4029344_SNP [dm3] 3L_4029344_SNP [dm6]	A	C	8.304e^-5	0.81	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3R	26036249	3R_26036249_SNP [dm3] 3R_30210527_SNP [dm6]	G	C	8.315e^-5	0.81	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	23286919	3R_23286919_SNP [dm3] 3R_27461197_SNP [dm6]	G	A	8.456e^-5	0.81	INTERGENIC
3R	5469839	3R_5469839_SNP [dm3] 3R_9644117_SNP [dm6]	G	A	8.471e^-5	0.81	DOWNSTREAM Fst INTRON Dh44	TF binding site BDTNP1_TFBS_twi
2L	5871678	2L_5871678_SNP [dm3] 2L_5871678_SNP [dm6]	G	A	8.503e^-5	0.81	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	22575097	3R_22575097_SNP [dm3] 3R_26749375_SNP [dm6]	C	G	8.517e^-5	0.81	INTERGENIC
3R	22575099	3R_22575099_DEL [dm3] 3R_26749377_DEL [dm6]	CTGCAATG	C	8.517e^-5	0.81	INTERGENIC
3R	25137584	3R_25137584_SNP [dm3] 3R_29311862_SNP [dm6]	A	G	8.537e^-5	0.81	INTERGENIC
2L	1387175	2L_1387175_SNP [dm3] 2L_1387175_SNP [dm6]	A	G	8.717e^-5	0.81	SYNONYMOUS_CODING lea
3R	8432718	3R_8432718_SNP [dm3] 3R_12606996_SNP [dm6]	G	A	8.724e^-5	0.81	INTERGENIC
3R	9674049	3R_9674049_SNP [dm3] 3R_13848327_SNP [dm6]	G	A	8.764e^-5	0.81	INTERGENIC
2L	21970501	2L_21970501_SNP [dm3] 2L_21970501_SNP [dm6]	T	A	8.807e^-5	0.81	INTERGENIC
3R	26892968	3R_26892968_SNP [dm3] 3R_31067246_SNP [dm6]	T	G	8.809e^-5	0.81	INTRON Sox100B
3R	26142938	3R_26142938_SNP [dm3] 3R_30317216_SNP [dm6]	T	G	8.819e^-5	0.81	INTRON hdc
3R	22583507	3R_22583507_SNP [dm3] 3R_26757785_SNP [dm6]	T	A	8.890e^-5	0.81	EXON CR45562
2L	5869615	2L_5869615_DEL [dm3] 2L_5869615_DEL [dm6]	CGGTTTTATGGCATG...	C	8.906e^-5	0.81	INTRON rau	TF binding site BDTNP1_TFBS_twi
3L	11224280	3L_11224280_SNP [dm3] 3L_11231180_SNP [dm6]	G	T	8.921e^-5	0.81	DOWNSTREAM CR45405 & 1 other INTERGENIC
2R	20019782	2R_20019782_SNP [dm3] 2R_24132259_SNP [dm6]	C	A	8.941e^-5	0.81	UPSTREAM tamo INTRON tamo
3L	2806938	3L_2806938_SNP [dm3] 3L_2806938_SNP [dm6]	A	T	8.984e^-5	0.81	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	5868835	2L_5868835_SNP [dm3] 2L_5868835_SNP [dm6]	C	T	9.029e^-5	0.81	INTRON rau
2R	20016387	2R_20016387_SNP [dm3] 2R_24128864_SNP [dm6]	A	G	9.035e^-5	0.81	NON_SYNONYMOUS_CODING tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14931695	3R_14931695_SNP [dm3] 3R_19105973_SNP [dm6]	G	T	9.058e^-5	0.81	INTRON CG6040
3L	10449191	3L_10449191_SNP [dm3] 3L_10456091_SNP [dm6]	T	C	9.093e^-5	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26134446	3R_26134446_SNP [dm3] 3R_30308724_SNP [dm6]	C	T	9.101e^-5	0.81	INTRON hdc
2R	20025556	2R_20025556_SNP [dm3] 2R_24138033_SNP [dm6]	A	C	9.191e^-5	0.81	UTR_5_PRIME CG4065 UPSTREAM CR44826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_run
3R	26893116	3R_26893116_SNP [dm3] 3R_31067394_SNP [dm6]	G	A	9.205e^-5	0.81	INTRON Sox100B
2R	16307693	2R_16307693_SNP [dm3] 2R_20420188_SNP [dm6]	A	G	9.247e^-5	0.81	INTERGENIC
3R	21803923	3R_21803923_SNP [dm3] 3R_25978201_SNP [dm6]	T	C	9.287e^-5	0.81	SYNONYMOUS_CODING CG42261	TF binding site mE1_TFBS_chinmo
2R	3003919	2R_3003919_DEL [dm3] 2R_7116414_DEL [dm6]	GGT	G	9.314e^-5	0.81	INTRON esn	TF binding site mE1_TFBS_inv
2R	20019430	2R_20019430_DEL [dm3] 2R_24131907_DEL [dm6]	ACATA	A	9.336e^-5	0.81	UPSTREAM tamo INTRON tamo
3L	5330162	3L_5330162_SNP [dm3] 3L_5337062_SNP [dm6]	T	A	9.390e^-5	0.81	INTERGENIC
2L	5870618	2L_5870618_SNP [dm3] 2L_5870618_SNP [dm6]	C	A	9.397e^-5	0.81	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5693561	2R_5693561_SNP [dm3] 2R_9806056_SNP [dm6]	G	A	9.401e^-5	0.81	INTRON CG1688
3R	21197052	3R_21197052_SNP [dm3] 3R_25371330_SNP [dm6]	A	T	9.409e^-5	0.81	INTRON Fur1
3L	10235601	3L_10235601_SNP [dm3] 3L_10242501_SNP [dm6]	T	G	9.416e^-5	0.81	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	26808878	3R_26808878_SNP [dm3] 3R_30983156_SNP [dm6]	G	T	9.456e^-5	0.81	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22502219	3R_22502219_SNP [dm3] 3R_26676497_SNP [dm6]	C	T	9.518e^-5	0.81	INTRON beat-VII	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	20216029	3R_20216029_SNP [dm3] 3R_24390307_SNP [dm6]	T	C	9.586e^-5	0.81	NON_SYNONYMOUS_CODING CG5768 UPSTREAM CG13615
2R	17395887	2R_17395887_SNP [dm3] 2R_21508382_SNP [dm6]	C	T	9.691e^-5	0.81	INTRON MESK2
3R	22611443	3R_22611443_SNP [dm3] 3R_26785721_SNP [dm6]	C	T	9.715e^-5	0.81	UTR_3_PRIME CG42790 DOWNSTREAM CG42790
3L	15187557	3L_15187557_SNP [dm3] 3L_15194457_SNP [dm6]	C	T	9.744e^-5	0.81	INTERGENIC
X	14638005	X_14638005_SNP [dm3] X_14743972_SNP [dm6]	C	T	9.748e^-5	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4127811	3L_4127811_SNP [dm3] 3L_4127811_SNP [dm6]	G	A	9.851e^-5	0.81	INTRON ens
2R	14897935	2R_14897935_SNP [dm3] 2R_19010430_SNP [dm6]	T	C	9.869e^-5	0.81	INTERGENIC
3L	5330157	3L_5330157_INS [dm3] 3L_5337057_INS [dm6]	A	AC	1.000e^-4	0.81	INTERGENIC
3L	22861791	3L_22861791_DEL [dm3] 3L_22868691_DEL [dm6]	GTG	G	1.006e^-4	0.81	UTR_3_PRIME Arf79F UPSTREAM CG11137 DOWNSTREAM snoRNA:Me28S-G764	TF binding site BDTNP1_TFBS_dl
3L	5311633	3L_5311633_SNP [dm3] 3L_5318533_SNP [dm6]	G	A	1.006e^-4	0.81	INTERGENIC
2L	4417577	2L_4417577_SNP [dm3] 2L_4417577_SNP [dm6]	T	A	1.014e^-4	0.81	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	4269407	3L_4269407_SNP [dm3] 3L_4269407_SNP [dm6]	G	C	1.016e^-4	0.81	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2210443	3L_2210443_SNP [dm3] 3L_2210443_SNP [dm6]	G	A	1.020e^-4	0.81	DOWNSTREAM CG15878 INTERGENIC
2R	12011938	2R_12011938_SNP [dm3] 2R_16124433_SNP [dm6]	C	T	1.025e^-4	0.81	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14257184	3L_14257184_SNP [dm3] 3L_14264084_SNP [dm6]	A	C	1.027e^-4	0.81	INTERGENIC
3R	25033856	3R_25033856_SNP [dm3] 3R_29208134_SNP [dm6]	A	G	1.046e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14430832	3R_14430832_SNP [dm3] 3R_18605110_SNP [dm6]	G	C	1.059e^-4	0.81	INTRON qin & 1 other
3L	9579325	3L_9579325_DEL [dm3] 3L_9586225_DEL [dm6]	TGTT	T	1.060e^-4	0.81	INTRON CG42673
3L	14257161	3L_14257161_SNP [dm3] 3L_14264061_SNP [dm6]	T	C	1.078e^-4	0.81	INTERGENIC
3L	14257114	3L_14257114_SNP [dm3] 3L_14264014_SNP [dm6]	A	T	1.078e^-4	0.81	INTERGENIC
3L	14257117	3L_14257117_INS [dm3] 3L_14264017_INS [dm6]	A	CG	1.078e^-4	0.81	INTERGENIC
3R	16247799	3R_16247799_DEL [dm3] 3R_20422077_DEL [dm6]	AATGA	A	1.079e^-4	0.81	INTRON Gfrl
2R	16931983	2R_16931983_SNP [dm3] 2R_21044478_SNP [dm6]	C	A	1.082e^-4	0.81	INTERGENIC
3L	22888702	3L_22888702_SNP [dm3] 3L_22895602_SNP [dm6]	A	G	1.082e^-4	0.81	UPSTREAM CR44688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22954757	3R_22954757_SNP [dm3] 3R_27129035_SNP [dm6]	A	T	1.082e^-4	0.81	INTRON CG6051
3R	26036246	3R_26036246_SNP [dm3] 3R_30210524_SNP [dm6]	T	A	1.088e^-4	0.81	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	18541872	3R_18541872_SNP [dm3] 3R_22716150_SNP [dm6]	T	C	1.089e^-4	0.81	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11224257	3L_11224257_SNP [dm3] 3L_11231157_SNP [dm6]	A	G	1.098e^-4	0.81	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	4763301	3L_4763301_SNP [dm3] 3L_4763301_SNP [dm6]	G	T	1.104e^-4	0.81	INTRON RhoGEF64C
2R	20026007	2R_20026007_SNP [dm3] 2R_24138484_SNP [dm6]	C	G	1.106e^-4	0.81	UPSTREAM CR44826 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
3R	22580706	3R_22580706_SNP [dm3] 3R_26754984_SNP [dm6]	G	T	1.107e^-4	0.81	INTERGENIC
3R	21477113	3R_21477113_SNP [dm3] 3R_25651391_SNP [dm6]	G	T	1.117e^-4	0.81	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14808802	2R_14808802_SNP [dm3] 2R_18921297_SNP [dm6]	C	G	1.127e^-4	0.81	INTRON sano
3L	16628329	3L_16628329_SNP [dm3] 3L_16635229_SNP [dm6]	C	G	1.128e^-4	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16628333	3L_16628333_SNP [dm3] 3L_16635233_SNP [dm6]	G	C	1.128e^-4	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16628336	3L_16628336_INS [dm3] 3L_16635236_INS [dm6]	A	TG	1.128e^-4	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16628341	3L_16628341_INS [dm3] 3L_16635241_INS [dm6]	A	ATGTT	1.128e^-4	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20216769	3R_20216769_SNP [dm3] 3R_24391047_SNP [dm6]	C	A	1.132e^-4	0.81	NON_SYNONYMOUS_CODING CG13615 UPSTREAM CG5768
3L	4053894	3L_4053894_SNP [dm3] 3L_4053894_SNP [dm6]	C	T	1.135e^-4	0.81	INTRON CG1136
2R	6017443	2R_6017443_SNP [dm3] 2R_10129938_SNP [dm6]	T	C	1.138e^-4	0.81	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21358927	3L_21358927_DEL [dm3] 3L_21365827_DEL [dm6]	CT	C	1.139e^-4	0.81	INTERGENIC
3L	2504989	3L_2504989_SNP [dm3] 3L_2504989_SNP [dm6]	C	T	1.139e^-4	0.81	DOWNSTREAM Spn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10503469	3R_10503469_SNP [dm3] 3R_14677747_SNP [dm6]	C	T	1.147e^-4	0.81	INTRON Meltrin
3L	20026436	3L_20026436_SNP [dm3] 3L_20033336_SNP [dm6]	G	A	1.152e^-4	0.81	INTERGENIC
3R	21813637	3R_21813637_SNP [dm3] 3R_25987915_SNP [dm6]	C	T	1.157e^-4	0.81	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
X	22149820	X_22149820_INS [dm3] X_22747984_INS [dm6]	C	CGCC	1.162e^-4	0.81	INTRON CR44997
2R	14058551	2R_14058551_SNP [dm3] 2R_18171046_SNP [dm6]	C	G	1.165e^-4	0.81	NON_SYNONYMOUS_CODING Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5872541	2L_5872541_SNP [dm3] 2L_5872541_SNP [dm6]	C	G	1.165e^-4	0.81	INTRON rau	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18801288	3R_18801288_SNP [dm3] 3R_22975566_SNP [dm6]	C	G	1.168e^-4	0.81	INTERGENIC
2R	8835349	2R_8835349_SNP [dm3] 2R_12947844_SNP [dm6]	T	C	1.173e^-4	0.81	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5704043	2R_5704043_SNP [dm3] 2R_9816538_SNP [dm6]	T	C	1.185e^-4	0.81	UTR_3_PRIME lectin-46Cb UPSTREAM lectin-46Ca INTRON CG1648	TF binding site mE1_TFBS_cad
X	9405029	X_9405029_SNP [dm3] X_9510996_SNP [dm6]	A	G	1.188e^-4	0.81	UPSTREAM CG34028 INTRON CG32700
3R	26464082	3R_26464082_DEL [dm3] 3R_30638360_DEL [dm6]	AT	A	1.192e^-4	0.81	INTERGENIC
X	20474238	X_20474238_SNP [dm3] X_20603211_SNP [dm6]	T	A	1.197e^-4	0.81	INTRON RunxA
2L	19807241	2L_19807241_SNP [dm3] 2L_19807241_SNP [dm6]	G	A	1.198e^-4	0.81	INTRON sick
2R	3003924	2R_3003924_SNP [dm3] 2R_7116419_SNP [dm6]	C	T	1.206e^-4	0.81	INTRON esn	TF binding site mE1_TFBS_inv
2R	8609283	2R_8609283_DEL [dm3] 2R_12721778_DEL [dm6]	ATGCAAGTA	A	1.210e^-4	0.81	INTRON CG42663
3L	16031067	3L_16031067_SNP [dm3] 3L_16037967_SNP [dm6]	T	C	1.213e^-4	0.81	DOWNSTREAM CG5895 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3L	2523582	3L_2523582_SNP [dm3] 3L_2523582_SNP [dm6]	C	A	1.218e^-4	0.81	INTRON Spn
3R	25033844	3R_25033844_SNP [dm3] 3R_29208122_SNP [dm6]	T	A	1.225e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12739079	3R_12739079_SNP [dm3] 3R_16913357_SNP [dm6]	T	C	1.229e^-4	0.81	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18615608	X_18615608_DEL [dm3] X_18721575_DEL [dm6]	CCC	C	1.232e^-4	0.81	INTRON CCKLR-17D1
3L	1448447	3L_1448447_SNP [dm3] 3L_1448447_SNP [dm6]	A	G	1.241e^-4	0.81	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11349047	3R_11349047_SNP [dm3] 3R_15523325_SNP [dm6]	C	G	1.253e^-4	0.81	INTERGENIC
3R	26136355	3R_26136355_SNP [dm3] 3R_30310633_SNP [dm6]	C	T	1.257e^-4	0.81	INTRON hdc
3L	16628350	3L_16628350_DEL [dm3] 3L_16635250_DEL [dm6]	AG	A	1.259e^-4	0.81	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26142959	3R_26142959_SNP [dm3] 3R_30317237_SNP [dm6]	G	T	1.261e^-4	0.81	INTRON hdc
3L	16276301	3L_16276301_SNP [dm3] 3L_16283201_SNP [dm6]	A	G	1.263e^-4	0.81	NON_SYNONYMOUS_CODING CG13048
2L	2273716	2L_2273716_SNP [dm3] 2L_2273716_SNP [dm6]	T	C	1.264e^-4	0.81	INTRON CR43753
2R	12011947	2R_12011947_SNP [dm3] 2R_16124442_SNP [dm6]	C	T	1.278e^-4	0.81	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	14638058	X_14638058_SNP [dm3] X_14744025_SNP [dm6]	A	G	1.281e^-4	0.81	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15949096	3R_15949096_SNP [dm3] 3R_20123374_SNP [dm6]	C	T	1.281e^-4	0.81	INTERGENIC
3R	22936461	3R_22936461_SNP [dm3] 3R_27110739_SNP [dm6]	A	G	1.282e^-4	0.81	INTRON gb EXON CR45209	TF binding site BDTNP1_TFBS_dl
3R	10966801	3R_10966801_SNP [dm3] 3R_15141079_SNP [dm6]	C	T	1.282e^-4	0.81	NON_SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26897523	3R_26897523_SNP [dm3] 3R_31071801_SNP [dm6]	A	T	1.283e^-4	0.81	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3L	2667737	3L_2667737_SNP [dm3] 3L_2667737_SNP [dm6]	A	G	1.295e^-4	0.81	INTRON Fife
3R	7137329	3R_7137329_SNP [dm3] 3R_11311607_SNP [dm6]	G	A	1.296e^-4	0.81	DOWNSTREAM CR45055 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	22535667	3R_22535667_SNP [dm3] 3R_26709945_SNP [dm6]	G	C	1.304e^-4	0.81	INTRON amon
3L	14563609	3L_14563609_SNP [dm3] 3L_14570509_SNP [dm6]	C	A	1.307e^-4	0.81	INTERGENIC
3L	2839229	3L_2839229_SNP [dm3] 3L_2839229_SNP [dm6]	T	A	1.319e^-4	0.81	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2L	1392657	2L_1392657_SNP [dm3] 2L_1392657_SNP [dm6]	A	G	1.322e^-4	0.81	INTRON lea	TF binding site mE1_TFBS_sens
X	10686111	X_10686111_INS [dm3] X_10792078_INS [dm6]	C	CC	1.325e^-4	0.81	UTR_3_PRIME Imp DOWNSTREAM Imp	TF binding site BDTNP1_TFBS_dl
3R	10500975	3R_10500975_SNP [dm3] 3R_14675253_SNP [dm6]	C	T	1.327e^-4	0.81	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21752050	3R_21752050_SNP [dm3] 3R_25926328_SNP [dm6]	T	C	1.347e^-4	0.81	INTRON CCAP-R
3L	10672228	3L_10672228_SNP [dm3] 3L_10679128_SNP [dm6]	C	T	1.353e^-4	0.81	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18562634	3L_18562634_SNP [dm3] 3L_18569534_SNP [dm6]	T	G	1.355e^-4	0.81	INTRON AstC-R1
2L	4415311	2L_4415311_SNP [dm3] 2L_4415311_SNP [dm6]	C	G	1.355e^-4	0.81	INTRON CG15431
2L	3827098	2L_3827098_SNP [dm3] 2L_3827098_SNP [dm6]	A	T	1.357e^-4	0.81	UTR_3_PRIME slp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	23301777	3R_23301777_SNP [dm3] 3R_27476055_SNP [dm6]	A	G	1.363e^-4	0.81	INTERGENIC
2R	19043873	2R_19043873_SNP [dm3] 2R_23156350_SNP [dm6]	G	A	1.366e^-4	0.81	INTRON CG9899
3R	25804521	3R_25804521_SNP [dm3] 3R_29978799_SNP [dm6]	A	G	1.366e^-4	0.81	INTERGENIC
2R	8839128	2R_8839128_DEL [dm3] 2R_12951623_DEL [dm6]	TACGGTTTTGAT...	T	1.369e^-4	0.81	INTRON CG44251 & 1 other
2R	12011944	2R_12011944_SNP [dm3] 2R_16124439_SNP [dm6]	G	A	1.369e^-4	0.81	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	8722836	X_8722836_SNP [dm3] X_8828803_SNP [dm6]	A	G	1.370e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27222672	3R_27222672_SNP [dm3] 3R_31396950_SNP [dm6]	G	A	1.374e^-4	0.81	INTRON Gcn2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11827802	2L_11827802_SNP [dm3] 2L_11827802_SNP [dm6]	T	C	1.375e^-4	0.81	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad
2L	12595264	2L_12595264_SNP [dm3] 2L_12595264_SNP [dm6]	C	A	1.377e^-4	0.81	INTRON nub
3L	11208747	3L_11208747_SNP [dm3] 3L_11215647_SNP [dm6]	A	G	1.379e^-4	0.81	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16686696	2R_16686696_SNP [dm3] 2R_20799191_SNP [dm6]	A	T	1.390e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26547808	3R_26547808_SNP [dm3] 3R_30722086_SNP [dm6]	C	T	1.393e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10974480	3R_10974480_SNP [dm3] 3R_15148758_SNP [dm6]	C	T	1.394e^-4	0.81	INTERGENIC
2R	8176688	2R_8176688_SNP [dm3] 2R_12289183_SNP [dm6]	G	A	1.395e^-4	0.81	INTRON CG42700
3L	4070374	3L_4070374_SNP [dm3] 3L_4070374_SNP [dm6]	T	C	1.404e^-4	0.81	DOWNSTREAM CG32259 INTRON wit
3R	21816185	3R_21816185_SNP [dm3] 3R_25990463_SNP [dm6]	T	C	1.404e^-4	0.81	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
2L	21968405	2L_21968405_SNP [dm3] 2L_21968405_SNP [dm6]	C	A	1.410e^-4	0.81	INTERGENIC
3R	26962288	3R_26962288_SNP [dm3] 3R_31136566_SNP [dm6]	A	C	1.416e^-4	0.81	INTRON Gycbeta100B
3R	21891604	3R_21891604_SNP [dm3] 3R_26065882_SNP [dm6]	T	C	1.420e^-4	0.81	INTERGENIC
3L	3711170	3L_3711170_SNP [dm3] 3L_3711170_SNP [dm6]	G	C	1.423e^-4	0.81	INTERGENIC
2L	1249983	2L_1249983_SNP [dm3] 2L_1249983_SNP [dm6]	A	G	1.424e^-4	0.81	INTERGENIC
2L	1249993	2L_1249993_DEL [dm3] 2L_1249993_DEL [dm6]	GT	G	1.424e^-4	0.81	INTERGENIC
2R	16064090	2R_16064090_SNP [dm3] 2R_20176585_SNP [dm6]	T	C	1.425e^-4	0.81	INTERGENIC
3R	22535675	3R_22535675_SNP [dm3] 3R_26709953_SNP [dm6]	A	G	1.441e^-4	0.812	INTRON amon
3L	16066366	3L_16066366_SNP [dm3] 3L_16073266_SNP [dm6]	C	T	1.442e^-4	0.812	UPSTREAM Mbs INTRON Mbs
3L	14257194	3L_14257194_SNP [dm3] 3L_14264094_SNP [dm6]	T	G	1.448e^-4	0.812	INTERGENIC
3R	21476980	3R_21476980_SNP [dm3] 3R_25651258_SNP [dm6]	T	C	1.458e^-4	0.812	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3811785	3L_3811785_SNP [dm3] 3L_3811785_SNP [dm6]	G	T	1.463e^-4	0.812	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25083337	3R_25083337_SNP [dm3] 3R_29257615_SNP [dm6]	A	C	1.465e^-4	0.812	DOWNSTREAM CG45544 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	9428295	X_9428295_SNP [dm3] X_9534262_SNP [dm6]	C	A	1.465e^-4	0.812	UTR_3_PRIME CG34026 INTRON CG32700
3L	16480068	3L_16480068_SNP [dm3] 3L_16486968_SNP [dm6]	G	C	1.468e^-4	0.812	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3R	22481392	3R_22481392_SNP [dm3] 3R_26655670_SNP [dm6]	G	A	1.470e^-4	0.812	UPSTREAM Tb INTRON beat-VII	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	21971542	2L_21971542_SNP [dm3] 2L_21971542_SNP [dm6]	C	T	1.472e^-4	0.812	INTERGENIC
2L	9390225	2L_9390225_SNP [dm3] 2L_9390225_SNP [dm6]	C	G	1.486e^-4	0.813	INTRON Shawl & 1 other	TF binding site mE1_TFBS_chinmo
3R	10342257	3R_10342257_SNP [dm3] 3R_14516535_SNP [dm6]	T	G	1.488e^-4	0.813	UPSTREAM CG34273 INTRON Pde6
3R	22574074	3R_22574074_DEL [dm3] 3R_26748352_DEL [dm6]	ACGGACGCA	A	1.498e^-4	0.813	INTERGENIC
2L	8685991	2L_8685991_SNP [dm3] 2L_8685991_SNP [dm6]	A	T	1.501e^-4	0.813	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2335605	2L_2335605_SNP [dm3] 2L_2335605_SNP [dm6]	C	G	1.501e^-4	0.813	INTRON CG9967 & 1 other
2L	1833751	2L_1833751_SNP [dm3] 2L_1833751_SNP [dm6]	C	T	1.509e^-4	0.813	INTERGENIC
3R	14167847	3R_14167847_SNP [dm3] 3R_18342125_SNP [dm6]	G	C	1.509e^-4	0.813	INTRON CG15803
3R	22574873	3R_22574873_SNP [dm3] 3R_26749151_SNP [dm6]	A	T	1.524e^-4	0.813	INTERGENIC
3L	5332747	3L_5332747_SNP [dm3] 3L_5339647_SNP [dm6]	T	C	1.525e^-4	0.813	INTERGENIC
3L	11297295	3L_11297295_SNP [dm3] 3L_11304195_SNP [dm6]	G	A	1.525e^-4	0.813	INTERGENIC
3L	1098269	3L_1098269_SNP [dm3] 3L_1098269_SNP [dm6]	A	G	1.526e^-4	0.813	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16748251	2R_16748251_SNP [dm3] 2R_20860746_SNP [dm6]	C	A	1.533e^-4	0.813	INTERGENIC
3R	25083340	3R_25083340_DEL [dm3] 3R_29257618_DEL [dm6]	GAGGGGCCAGCGATCAGATG...	T	1.537e^-4	0.813	DOWNSTREAM CG45544 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14163066	2R_14163066_SNP [dm3] 2R_18275561_SNP [dm6]	C	T	1.539e^-4	0.813	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_cad
2R	18497233	2R_18497233_SNP [dm3] 2R_22609728_SNP [dm6]	T	C	1.545e^-4	0.813	SYNONYMOUS_CODING CG4329 DOWNSTREAM Vps20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13546159	2R_13546159_SNP [dm3] 2R_17658654_SNP [dm6]	C	G	1.552e^-4	0.813	INTRON CCHa1-R
2R	18497635	2R_18497635_SNP [dm3] 2R_22610130_SNP [dm6]	T	C	1.557e^-4	0.813	SYNONYMOUS_CODING CG4329 DOWNSTREAM Vps20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14637985	X_14637985_DEL [dm3] X_14743952_DEL [dm6]	TAGAATATTT	T	1.560e^-4	0.813	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17731438	3R_17731438_SNP [dm3] 3R_21905716_SNP [dm6]	C	T	1.562e^-4	0.813	INTRON CG6678	TF binding site mE1_TFBS_chinmo
3L	16628323	3L_16628323_INS [dm3] 3L_16635223_INS [dm6]	A	ATGGAACTATTATTA...	1.567e^-4	0.813	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10672392	3L_10672392_SNP [dm3] 3L_10679292_SNP [dm6]	G	C	1.571e^-4	0.813	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12163719	X_12163719_SNP [dm3] X_12269686_SNP [dm6]	C	T	1.581e^-4	0.813	INTRON Ten-a
X	9429313	X_9429313_SNP [dm3] X_9535280_SNP [dm6]	T	A	1.584e^-4	0.813	DOWNSTREAM CG34026 INTRON CG32700
3R	918729	3R_918729_SNP [dm3] 3R_5093007_SNP [dm6]	A	T	1.592e^-4	0.813	INTERGENIC
3R	14429777	3R_14429777_DEL [dm3] 3R_18604055_DEL [dm6]	CTC	C	1.596e^-4	0.813	INTRON qin & 1 other
3R	10901367	3R_10901367_SNP [dm3] 3R_15075645_SNP [dm6]	T	G	1.597e^-4	0.813	INTRON dpr9
3R	25023824	3R_25023824_INS [dm3] 3R_29198102_INS [dm6]	A	ACAATA	1.599e^-4	0.813	INTRON CG14515	TF binding site mE1_TFBS_chinmo
2L	3536612	2L_3536612_SNP [dm3] 2L_3536612_SNP [dm6]	A	T	1.604e^-4	0.813	INTERGENIC
2R	20025518	2R_20025518_SNP [dm3] 2R_24137995_SNP [dm6]	A	T	1.604e^-4	0.813	UTR_5_PRIME CG4065 UPSTREAM CR44826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	21999223	2L_21999223_SNP [dm3] 2L_21999223_SNP [dm6]	T	A	1.609e^-4	0.813	DOWNSTREAM CR44916 INTERGENIC
3R	10143727	3R_10143727_SNP [dm3] 3R_14318005_SNP [dm6]	C	T	1.610e^-4	0.813	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22008099	2L_22008099_INS [dm3] 2L_22008099_INS [dm6]	T	TT	1.615e^-4	0.813	INTERGENIC
2L	9801921	2L_9801921_SNP [dm3] 2L_9801921_SNP [dm6]	G	A	1.616e^-4	0.813	INTRON nAChRalpha6
3R	26893071	3R_26893071_SNP [dm3] 3R_31067349_SNP [dm6]	C	T	1.625e^-4	0.815	INTRON Sox100B
2L	1245121	2L_1245121_SNP [dm3] 2L_1245121_SNP [dm6]	C	T	1.635e^-4	0.818	INTERGENIC
3L	6015536	3L_6015536_SNP [dm3] 3L_6022436_SNP [dm6]	T	G	1.639e^-4	0.818	INTRON PVRAP
X	12744181	X_12744181_DEL [dm3] X_12850148_DEL [dm6]	ATA	T	1.643e^-4	0.818	INTRON Pde9
2R	10589127	2R_10589127_INS [dm3] 2R_14701622_INS [dm6]	T	TT	1.655e^-4	0.821	INTRON mspo
2R	14060758	2R_14060758_SNP [dm3] 2R_18173253_SNP [dm6]	C	T	1.666e^-4	0.822	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
3L	11224142	3L_11224142_SNP [dm3] 3L_11231042_SNP [dm6]	G	A	1.670e^-4	0.822	DOWNSTREAM CR45405 & 1 other INTERGENIC
2R	12011941	2R_12011941_SNP [dm3] 2R_16124436_SNP [dm6]	C	T	1.671e^-4	0.822	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8479873	3R_8479873_SNP [dm3] 3R_12654151_SNP [dm6]	C	A	1.673e^-4	0.822	UPSTREAM CG6225 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18856689	3R_18856689_INS [dm3] 3R_23030967_INS [dm6]	A	ATTTGGCGGCA...	1.678e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14559634	2L_14559634_SNP [dm3] 2L_14559634_SNP [dm6]	C	A	1.697e^-4	0.825	UPSTREAM CR44854 INTERGENIC
2L	4503748	2L_4503748_SNP [dm3] 2L_4503748_SNP [dm6]	T	C	1.700e^-4	0.825	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21998986	2L_21998986_SNP [dm3] 2L_21998986_SNP [dm6]	G	A	1.702e^-4	0.825	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
3R	22943712	3R_22943712_SNP [dm3] 3R_27117990_SNP [dm6]	T	G	1.710e^-4	0.825	SYNONYMOUS_CODING CG5880 UPSTREAM CG5882	TF binding site mE1_TFBS_cad
3R	10343265	3R_10343265_SNP [dm3] 3R_14517543_SNP [dm6]	C	G	1.727e^-4	0.825	DOWNSTREAM CG34273 INTRON Pde6
3R	26892963	3R_26892963_SNP [dm3] 3R_31067241_SNP [dm6]	A	G	1.728e^-4	0.825	INTRON Sox100B
3L	14153752	3L_14153752_MNP [dm3] 3L_14160652_MNP [dm6]	GTA	TAC	1.734e^-4	0.825	INTERGENIC	regulatory region REDfly_CRMs
2R	8835602	2R_8835602_SNP [dm3] 2R_12948097_SNP [dm6]	T	G	1.735e^-4	0.825	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11224203	3L_11224203_SNP [dm3] 3L_11231103_SNP [dm6]	G	C	1.736e^-4	0.825	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	26493611	3R_26493611_SNP [dm3] 3R_30667889_SNP [dm6]	G	T	1.738e^-4	0.825	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4003278	3L_4003278_SNP [dm3] 3L_4003278_SNP [dm6]	T	A	1.745e^-4	0.825	UPSTREAM CG14985 INTERGENIC
3L	15305747	3L_15305747_SNP [dm3] 3L_15312647_SNP [dm6]	C	T	1.746e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5333409	3L_5333409_SNP [dm3] 3L_5340309_SNP [dm6]	G	C	1.746e^-4	0.825	INTERGENIC
3R	26142950	3R_26142950_SNP [dm3] 3R_30317228_SNP [dm6]	T	G	1.747e^-4	0.825	INTRON hdc
2L	21998617	2L_21998617_DEL [dm3] 2L_21998617_DEL [dm6]	AAGCAGCTTGATCGAGAAAG...	A	1.754e^-4	0.827	INTERGENIC
3L	5332825	3L_5332825_SNP [dm3] 3L_5339725_SNP [dm6]	T	G	1.766e^-4	0.828	INTERGENIC
3R	22963684	3R_22963684_SNP [dm3] 3R_27137962_SNP [dm6]	T	C	1.767e^-4	0.828	INTRON CG6051
X	17539670	X_17539670_SNP [dm3] X_17645637_SNP [dm6]	G	T	1.776e^-4	0.83	INTRON RhoGAPp190
3R	10378137	3R_10378137_SNP [dm3] 3R_14552415_SNP [dm6]	C	G	1.778e^-4	0.83	INTRON Pde6
2L	9354377	2L_9354377_SNP [dm3] 2L_9354377_SNP [dm6]	A	T	1.787e^-4	0.83	INTERGENIC
3R	16250546	3R_16250546_SNP [dm3] 3R_20424824_SNP [dm6]	A	T	1.787e^-4	0.83	INTRON Gfrl
3R	19602403	3R_19602403_SNP [dm3] 3R_23776681_SNP [dm6]	G	A	1.793e^-4	0.83	SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18247894	3L_18247894_SNP [dm3] 3L_18254794_SNP [dm6]	T	C	1.801e^-4	0.832	INTERGENIC
2R	18291047	2R_18291047_SNP [dm3] 2R_22403542_SNP [dm6]	G	T	1.809e^-4	0.833	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2340419	2L_2340419_SNP [dm3] 2L_2340419_SNP [dm6]	T	C	1.811e^-4	0.833	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12014311	2R_12014311_SNP [dm3] 2R_16126806_SNP [dm6]	T	G	1.827e^-4	0.833	INTRON spin
3R	3416755	3R_3416755_SNP [dm3] 3R_7591033_SNP [dm6]	G	A	1.829e^-4	0.833	INTRON CG34127
3L	11224000	3L_11224000_SNP [dm3] 3L_11230900_SNP [dm6]	A	C	1.836e^-4	0.833	DOWNSTREAM CR45405 & 1 other INTERGENIC
X	12676024	X_12676024_INS [dm3] X_12781991_INS [dm6]	T	TT	1.838e^-4	0.833	INTRON CG32647
3L	16628328	3L_16628328_SNP [dm3] 3L_16635228_SNP [dm6]	A	G	1.839e^-4	0.833	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14266934	3R_14266934_SNP [dm3] 3R_18441212_SNP [dm6]	A	G	1.841e^-4	0.833	INTRON fru
3R	24950778	3R_24950778_SNP [dm3] 3R_29125056_SNP [dm6]	G	A	1.851e^-4	0.833	INTRON CG11880
2R	9823175	2R_9823175_SNP [dm3] 2R_13935670_SNP [dm6]	A	G	1.855e^-4	0.833	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22929132	3R_22929132_SNP [dm3] 3R_27103410_SNP [dm6]	G	A	1.856e^-4	0.833	DOWNSTREAM CG17189 INTRON CG6074
3R	10974443	3R_10974443_SNP [dm3] 3R_15148721_SNP [dm6]	A	C	1.857e^-4	0.833	INTERGENIC
3R	16524828	3R_16524828_SNP [dm3] 3R_20699106_SNP [dm6]	C	T	1.873e^-4	0.836	INTRON Oamb	TF binding site mE1_TFBS_cad
X	7575367	X_7575367_SNP [dm3] X_7681334_SNP [dm6]	G	A	1.873e^-4	0.836	UPSTREAM CR45666 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14441416	2R_14441416_SNP [dm3] 2R_18553911_SNP [dm6]	G	T	1.885e^-4	0.839	DOWNSTREAM GEFmeso INTERGENIC
3R	26529629	3R_26529629_SNP [dm3] 3R_30703907_SNP [dm6]	C	G	1.891e^-4	0.839	DOWNSTREAM CG31010 INTERGENIC
2L	2161899	2L_2161899_SNP [dm3] 2L_2161899_SNP [dm6]	A	T	1.893e^-4	0.839	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15123889	3R_15123889_SNP [dm3] 3R_19298167_SNP [dm6]	C	T	1.904e^-4	0.839	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9823186	2R_9823186_SNP [dm3] 2R_13935681_SNP [dm6]	A	G	1.908e^-4	0.839	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2161896	2L_2161896_SNP [dm3] 2L_2161896_SNP [dm6]	T	G	1.913e^-4	0.839	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	21998616	2L_21998616_SNP [dm3] 2L_21998616_SNP [dm6]	A	T	1.914e^-4	0.839	INTERGENIC
X	9429629	X_9429629_SNP [dm3] X_9535596_SNP [dm6]	T	C	1.917e^-4	0.839	DOWNSTREAM CG34026 INTRON CG32700
2R	2852010	2R_2852010_SNP [dm3] 2R_6964505_SNP [dm6]	G	A	1.919e^-4	0.839	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23033049	3R_23033049_SNP [dm3] 3R_27207327_SNP [dm6]	C	A	1.925e^-4	0.84	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	19324005	2R_19324005_INS [dm3] 2R_23436482_INS [dm6]	C	CC	1.947e^-4	0.842	INTERGENIC
2L	1127617	2L_1127617_SNP [dm3] 2L_1127617_SNP [dm6]	G	T	1.961e^-4	0.842	INTRON Pino	TF binding site mE1_TFBS_sens
X	12744214	X_12744214_SNP [dm3] X_12850181_SNP [dm6]	T	G	1.966e^-4	0.842	INTRON Pde9
3R	3611165	3R_3611165_SNP [dm3] 3R_7785443_SNP [dm6]	T	C	1.970e^-4	0.842	DOWNSTREAM CG18748 INTRON CG18745
3R	22217609	3R_22217609_SNP [dm3] 3R_26391887_SNP [dm6]	A	T	1.973e^-4	0.842	INTERGENIC
2R	18907121	2R_18907121_SNP [dm3] 2R_23019598_SNP [dm6]	A	T	1.976e^-4	0.842	INTRON twi & 1 other
3L	12475683	3L_12475683_SNP [dm3] 3L_12482583_SNP [dm6]	C	T	1.976e^-4	0.842	UPSTREAM CG33725 INTRON CG10663
3R	26519097	3R_26519097_SNP [dm3] 3R_30693375_SNP [dm6]	G	A	1.978e^-4	0.842	DOWNSTREAM CG12069 & 1 other INTERGENIC
3R	26465959	3R_26465959_DEL [dm3] 3R_30640237_DEL [dm6]	CG	C	1.978e^-4	0.842	INTERGENIC
3R	16719596	3R_16719596_SNP [dm3] 3R_20893874_SNP [dm6]	C	G	1.979e^-4	0.842	UPSTREAM CR44947 DOWNSTREAM CG10830 INTERGENIC
3L	18245739	3L_18245739_SNP [dm3] 3L_18252639_SNP [dm6]	C	T	1.983e^-4	0.842	SYNONYMOUS_CODING CheA75a
3L	15306539	3L_15306539_SNP [dm3] 3L_15313439_SNP [dm6]	C	G	1.989e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9429286	X_9429286_SNP [dm3] X_9535253_SNP [dm6]	C	G	1.994e^-4	0.842	DOWNSTREAM CG34026 INTRON CG32700
3R	16949950	3R_16949950_SNP [dm3] 3R_21124228_SNP [dm6]	C	T	1.996e^-4	0.842	INTRON slmb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21817272	3R_21817272_SNP [dm3] 3R_25991550_SNP [dm6]	G	A	1.999e^-4	0.842	SYNONYMOUS_CODING Nf1
3L	7433186	3L_7433186_SNP [dm3] 3L_7440086_SNP [dm6]	A	G	2.003e^-4	0.842	SYNONYMOUS_CODING sphinx2 UPSTREAM sphinx1 INTRON CG42458
2L	7188762	2L_7188762_SNP [dm3] 2L_7188762_SNP [dm6]	A	T	2.008e^-4	0.842	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22005635	2L_22005635_SNP [dm3] 2L_22005635_SNP [dm6]	T	A	2.013e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21055829	3R_21055829_SNP [dm3] 3R_25230107_SNP [dm6]	T	G	2.023e^-4	0.842	INTRON Cad96Cb
3L	3016880	3L_3016880_SNP [dm3] 3L_3016880_SNP [dm6]	A	C	2.038e^-4	0.842	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2R	14899459	2R_14899459_SNP [dm3] 2R_19011954_SNP [dm6]	G	T	2.039e^-4	0.842	INTERGENIC
3R	10343234	3R_10343234_SNP [dm3] 3R_14517512_SNP [dm6]	C	A	2.041e^-4	0.842	DOWNSTREAM CG34273 INTRON Pde6
2R	12637490	2R_12637490_SNP [dm3] 2R_16749985_SNP [dm6]	C	T	2.045e^-4	0.842	SYNONYMOUS_CODING Acp53Ea UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c
3R	10963685	3R_10963685_SNP [dm3] 3R_15137963_SNP [dm6]	C	T	2.045e^-4	0.842	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14882232	2R_14882232_SNP [dm3] 2R_18994727_SNP [dm6]	A	G	2.046e^-4	0.842	INTRON tn EXON snoRNA:abba-a
3L	16145008	3L_16145008_SNP [dm3] 3L_16151908_SNP [dm6]	G	A	2.052e^-4	0.842	INTRON CG5151
3L	8386708	3L_8386708_SNP [dm3] 3L_8393608_SNP [dm6]	G	A	2.065e^-4	0.842	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna
2L	6739766	2L_6739766_SNP [dm3] 2L_6739766_SNP [dm6]	C	A	2.075e^-4	0.842	NON_SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5673003	3L_5673003_SNP [dm3] 3L_5679903_SNP [dm6]	A	G	2.084e^-4	0.842	INTRON sif
3R	22575124	3R_22575124_SNP [dm3] 3R_26749402_SNP [dm6]	C	A	2.090e^-4	0.842	INTERGENIC
3L	15765493	3L_15765493_SNP [dm3] 3L_15772393_SNP [dm6]	A	T	2.090e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19256497	2R_19256497_SNP [dm3] 2R_23368974_SNP [dm6]	A	T	2.100e^-4	0.842	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
3L	17234188	3L_17234188_SNP [dm3] 3L_17241088_SNP [dm6]	T	G	2.100e^-4	0.842	INTRON CG6512	TF binding site mE1_TFBS_cad
3R	15006424	3R_15006424_SNP [dm3] 3R_19180702_SNP [dm6]	A	G	2.103e^-4	0.842	UTR_5_PRIME CG31475 UPSTREAM CG5555	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	14419286	2L_14419286_SNP [dm3] 2L_14419286_SNP [dm6]	A	G	2.111e^-4	0.842	INTERGENIC
3L	16887954	3L_16887954_SNP [dm3] 3L_16894854_SNP [dm6]	G	T	2.122e^-4	0.842	INTRON Lmpt
3R	23905572	3R_23905572_SNP [dm3] 3R_28079850_SNP [dm6]	T	C	2.124e^-4	0.842	INTRON CG34362
3L	7316656	3L_7316656_SNP [dm3] 3L_7323556_SNP [dm6]	G	C	2.129e^-4	0.842	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	13627041	3R_13627041_SNP [dm3] 3R_17801319_SNP [dm6]	A	G	2.137e^-4	0.842	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
2R	20025791	2R_20025791_SNP [dm3] 2R_24138268_SNP [dm6]	G	C	2.142e^-4	0.842	UPSTREAM CR44826 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2R	14862263	2R_14862263_SNP [dm3] 2R_18974758_SNP [dm6]	T	C	2.143e^-4	0.842	SYNONYMOUS_CODING Topors	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7527796	X_7527796_DEL [dm3] X_7633763_DEL [dm6]	CTAAAGC	C	2.146e^-4	0.842	INTRON ct
X	9429215	X_9429215_SNP [dm3] X_9535182_SNP [dm6]	A	T	2.152e^-4	0.842	DOWNSTREAM CG34026 INTRON CG32700
2L	8686004	2L_8686004_SNP [dm3] 2L_8686004_SNP [dm6]	A	G	2.155e^-4	0.842	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2667701	3L_2667701_SNP [dm3] 3L_2667701_SNP [dm6]	C	T	2.157e^-4	0.842	INTRON Fife
3L	2667727	3L_2667727_SNP [dm3] 3L_2667727_SNP [dm6]	A	G	2.157e^-4	0.842	INTRON Fife
3R	4405673	3R_4405673_SNP [dm3] 3R_8579951_SNP [dm6]	T	C	2.166e^-4	0.842	INTRON 5-HT2B
2L	14559544	2L_14559544_SNP [dm3] 2L_14559544_SNP [dm6]	C	T	2.167e^-4	0.842	UPSTREAM CR44854 INTERGENIC
3R	26469737	3R_26469737_SNP [dm3] 3R_30644015_SNP [dm6]	A	T	2.171e^-4	0.842	INTRON CG31013
2R	14864488	2R_14864488_SNP [dm3] 2R_18976983_SNP [dm6]	T	C	2.175e^-4	0.842	UTR_3_PRIME Topors UPSTREAM CG18605
2R	16716811	2R_16716811_SNP [dm3] 2R_20829306_SNP [dm6]	G	A	2.176e^-4	0.842	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26529464	3R_26529464_SNP [dm3] 3R_30703742_SNP [dm6]	C	A	2.176e^-4	0.842	INTERGENIC
X	18978365	X_18978365_SNP [dm3] X_19084332_SNP [dm6]	G	A	2.177e^-4	0.842	DOWNSTREAM CR45503 INTERGENIC
3L	16887814	3L_16887814_SNP [dm3] 3L_16894714_SNP [dm6]	C	T	2.198e^-4	0.842	INTRON Lmpt
2L	2290449	2L_2290449_SNP [dm3] 2L_2290449_SNP [dm6]	G	T	2.201e^-4	0.842	SYNONYMOUS_CODING robl22E
2R	6826918	2R_6826918_INS [dm3] 2R_10939413_INS [dm6]	G	CTCTTTAATT	2.203e^-4	0.842	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
2R	7163531	2R_7163531_SNP [dm3] 2R_11276026_SNP [dm6]	A	G	2.206e^-4	0.842	UPSTREAM TpnC47D INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	4393806	3L_4393806_SNP [dm3] 3L_4393806_SNP [dm6]	A	T	2.211e^-4	0.842	INTRON slow
3R	21932525	3R_21932525_SNP [dm3] 3R_26106803_SNP [dm6]	C	T	2.215e^-4	0.842	UPSTREAM CG31324 INTERGENIC
2L	21998641	2L_21998641_SNP [dm3] 2L_21998641_SNP [dm6]	C	T	2.222e^-4	0.842	INTERGENIC
3R	24812097	3R_24812097_SNP [dm3] 3R_28986375_SNP [dm6]	C	G	2.232e^-4	0.842	INTERGENIC
3L	3915110	3L_3915110_SNP [dm3] 3L_3915110_SNP [dm6]	T	A	2.232e^-4	0.842	INTRON Eip63F-1
3R	10584245	3R_10584245_SNP [dm3] 3R_14758523_SNP [dm6]	A	T	2.233e^-4	0.842	INTRON jvl
X	18978333	X_18978333_DEL [dm3] X_19084300_DEL [dm6]	TGTTATAACAAATGG...	T	2.233e^-4	0.842	DOWNSTREAM CR45503 INTERGENIC
3L	15305990	3L_15305990_SNP [dm3] 3L_15312890_SNP [dm6]	A	C	2.235e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21909882	2L_21909882_SNP [dm3] 2L_21909882_SNP [dm6]	C	T	2.243e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	10136521	2L_10136521_SNP [dm3] 2L_10136521_SNP [dm6]	A	C	2.257e^-4	0.842	INTRON CG44153
2R	8835178	2R_8835178_SNP [dm3] 2R_12947673_SNP [dm6]	A	T	2.258e^-4	0.842	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21902691	3R_21902691_SNP [dm3] 3R_26076969_SNP [dm6]	A	C	2.264e^-4	0.842	UTR_3_PRIME dys
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	2.277e^-4	0.842	INTRON sano
3R	20750360	3R_20750360_SNP [dm3] 3R_24924638_SNP [dm6]	G	T	2.278e^-4	0.842	NON_SYNONYMOUS_CODING Mink UPSTREAM Trf4-2	TF binding site mE1_TFBS_cad
3R	10141006	3R_10141006_DEL [dm3] 3R_14315284_DEL [dm6]	CCTAC	C	2.288e^-4	0.842	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	17149709	X_17149709_SNP [dm3] X_17255676_SNP [dm6]	T	C	2.293e^-4	0.842	INTRON f
2R	15768802	2R_15768802_SNP [dm3] 2R_19881297_SNP [dm6]	T	G	2.298e^-4	0.842	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	23051070	3R_23051070_SNP [dm3] 3R_27225348_SNP [dm6]	A	G	2.301e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	3367293	2L_3367293_SNP [dm3] 2L_3367293_SNP [dm6]	C	G	2.302e^-4	0.842	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
3R	25141654	3R_25141654_SNP [dm3] 3R_29315932_SNP [dm6]	T	C	2.303e^-4	0.842	INTRON Cnx99A
3L	11224459	3L_11224459_SNP [dm3] 3L_11231359_SNP [dm6]	G	C	2.304e^-4	0.842	DOWNSTREAM CG42671 EXON CR45405
3R	10500973	3R_10500973_SNP [dm3] 3R_14675251_SNP [dm6]	C	T	2.307e^-4	0.842	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14254482	2L_14254482_INS [dm3] 2L_14254482_INS [dm6]	T	TT	2.307e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19391684	3R_19391684_SNP [dm3] 3R_23565962_SNP [dm6]	C	T	2.312e^-4	0.842	INTRON beat-IV
3R	18104742	3R_18104742_SNP [dm3] 3R_22279020_SNP [dm6]	C	T	2.315e^-4	0.842	INTRON SKIP
3R	25025508	3R_25025508_SNP [dm3] 3R_29199786_SNP [dm6]	G	A	2.318e^-4	0.842	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10105335	2L_10105335_DEL [dm3] 2L_10105335_DEL [dm6]	CTTTTGCAAAAATGTTTAAC...	C	2.319e^-4	0.842	INTRON CG44153 & 1 other
2L	4454065	2L_4454065_SNP [dm3] 2L_4454065_SNP [dm6]	A	G	2.323e^-4	0.842	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18326553	2R_18326553_SNP [dm3] 2R_22439048_SNP [dm6]	G	A	2.326e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3327076	2R_3327076_SNP [dm3] 2R_7439571_SNP [dm6]	G	C	2.327e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20025538	2R_20025538_SNP [dm3] 2R_24138015_SNP [dm6]	G	T	2.335e^-4	0.842	UTR_5_PRIME CG4065 UPSTREAM CR44826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	25141651	3R_25141651_SNP [dm3] 3R_29315929_SNP [dm6]	T	C	2.336e^-4	0.842	INTRON Cnx99A
2R	19228436	2R_19228436_SNP [dm3] 2R_23340913_SNP [dm6]	T	C	2.341e^-4	0.842	INTERGENIC
X	10619674	X_10619674_SNP [dm3] X_10725641_SNP [dm6]	G	A	2.342e^-4	0.842	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20301561	3R_20301561_SNP [dm3] 3R_24475839_SNP [dm6]	G	T	2.344e^-4	0.842	INTERGENIC
2L	7188166	2L_7188166_SNP [dm3] 2L_7188166_SNP [dm6]	G	C	2.364e^-4	0.842	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23901337	3R_23901337_SNP [dm3] 3R_28075615_SNP [dm6]	T	A	2.366e^-4	0.842	INTRON CG34362
3L	8539495	3L_8539495_SNP [dm3] 3L_8546395_SNP [dm6]	C	A	2.380e^-4	0.842	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16628349	3L_16628349_SNP [dm3] 3L_16635249_SNP [dm6]	A	G	2.381e^-4	0.842	INTRON Abl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21766308	3R_21766308_SNP [dm3] 3R_25940586_SNP [dm6]	G	A	2.384e^-4	0.842	INTRON CCAP-R
3L	3822336	3L_3822336_SNP [dm3] 3L_3822336_SNP [dm6]	T	G	2.389e^-4	0.842	INTRON enc
2R	11473253	2R_11473253_SNP [dm3] 2R_15585748_SNP [dm6]	A	T	2.389e^-4	0.842	INTERGENIC
2R	14898601	2R_14898601_SNP [dm3] 2R_19011096_SNP [dm6]	A	T	2.393e^-4	0.842	INTERGENIC
3R	21972386	3R_21972386_SNP [dm3] 3R_26146664_SNP [dm6]	C	T	2.409e^-4	0.842	INTERGENIC
3L	9579340	3L_9579340_SNP [dm3] 3L_9586240_SNP [dm6]	G	A	2.411e^-4	0.842	INTRON CG42673
2L	8685938	2L_8685938_SNP [dm3] 2L_8685938_SNP [dm6]	C	A	2.412e^-4	0.842	START_GAINED PrBP UTR_5_PRIME PrBP UPSTREAM Trs23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9579380	3L_9579380_SNP [dm3] 3L_9586280_SNP [dm6]	A	G	2.414e^-4	0.842	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1481071	3L_1481071_SNP [dm3] 3L_1481071_SNP [dm6]	C	T	2.415e^-4	0.842	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13350584	3R_13350584_SNP [dm3] 3R_17524862_SNP [dm6]	A	T	2.428e^-4	0.842	INTERGENIC
3L	8149215	3L_8149215_SNP [dm3] 3L_8156115_SNP [dm6]	T	A	2.431e^-4	0.842	INTRON CG42445
3R	19391610	3R_19391610_SNP [dm3] 3R_23565888_SNP [dm6]	C	T	2.442e^-4	0.842	INTRON beat-IV
3L	15306004	3L_15306004_SNP [dm3] 3L_15312904_SNP [dm6]	C	A	2.443e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18411378	3L_18411378_SNP [dm3] 3L_18418278_SNP [dm6]	A	C	2.444e^-4	0.842	INTERGENIC
2L	6098853	2L_6098853_SNP [dm3] 2L_6098853_SNP [dm6]	C	A	2.445e^-4	0.842	UTR_5_PRIME CG9175 INTRON CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20721121	3R_20721121_SNP [dm3] 3R_24895399_SNP [dm6]	C	A	2.448e^-4	0.842	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10446150	2R_10446150_SNP [dm3] 2R_14558645_SNP [dm6]	T	A	2.455e^-4	0.842	INTRON ttv
X	10619678	X_10619678_SNP [dm3] X_10725645_SNP [dm6]	A	T	2.456e^-4	0.842	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2161884	2L_2161884_SNP [dm3] 2L_2161884_SNP [dm6]	T	C	2.457e^-4	0.842	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18026025	2R_18026025_SNP [dm3] 2R_22138520_SNP [dm6]	G	A	2.457e^-4	0.842	UPSTREAM CG11269 INTRON a
3L	16020666	3L_16020666_SNP [dm3] 3L_16027566_SNP [dm6]	G	A	2.460e^-4	0.842	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7184300	3L_7184300_SNP [dm3] 3L_7191200_SNP [dm6]	G	C	2.462e^-4	0.842	INTERGENIC
2L	8685939	2L_8685939_SNP [dm3] 2L_8685939_SNP [dm6]	G	A	2.467e^-4	0.842	START_GAINED PrBP UTR_5_PRIME PrBP UPSTREAM Trs23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13351170	3R_13351170_SNP [dm3] 3R_17525448_SNP [dm6]	C	A	2.479e^-4	0.842	INTERGENIC
3R	6450848	3R_6450848_SNP [dm3] 3R_10625126_SNP [dm6]	C	A	2.484e^-4	0.842	INTRON hth	TF binding site BDTNP1_TFBS_dl
3R	13627059	3R_13627059_SNP [dm3] 3R_17801337_SNP [dm6]	T	A	2.489e^-4	0.842	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
2L	14559548	2L_14559548_SNP [dm3] 2L_14559548_SNP [dm6]	A	G	2.489e^-4	0.842	UPSTREAM CR44854 INTERGENIC
3R	17185308	3R_17185308_SNP [dm3] 3R_21359586_SNP [dm6]	C	A	2.494e^-4	0.842	SPLICE_SITE_REGION pre-mod_mdg4_-I & 1 other UTR_5_PRIME pre-mod_mdg4_-L & 5 others UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26418491	3R_26418491_SNP [dm3] 3R_30592769_SNP [dm6]	A	G	2.497e^-4	0.842	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16763437	3R_16763437_SNP [dm3] 3R_20937715_SNP [dm6]	T	C	2.498e^-4	0.842	INTRON CG31191
3R	22535648	3R_22535648_SNP [dm3] 3R_26709926_SNP [dm6]	C	T	2.503e^-4	0.842	INTRON amon
3L	7609670	3L_7609670_SNP [dm3] 3L_7616570_SNP [dm6]	G	A	2.512e^-4	0.842	INTRON CG33275
3R	15552112	3R_15552112_DEL [dm3] 3R_19726390_DEL [dm6]	TT	T	2.515e^-4	0.842	INTERGENIC
3L	429160	3L_429160_SNP [dm3] 3L_429160_SNP [dm6]	G	A	2.515e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6002293	2R_6002293_SNP [dm3] 2R_10114788_SNP [dm6]	T	A	2.529e^-4	0.843	INTRON Pfk
2R	13710532	2R_13710532_SNP [dm3] 2R_17823027_SNP [dm6]	A	G	2.542e^-4	0.843	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
X	9429272	X_9429272_SNP [dm3] X_9535239_SNP [dm6]	A	G	2.547e^-4	0.843	DOWNSTREAM CG34026 INTRON CG32700
3R	26423877	3R_26423877_SNP [dm3] 3R_30598155_SNP [dm6]	G	A	2.555e^-4	0.843	SYNONYMOUS_CODING CG31019 INTRON CG2246	TF binding site mE1_TFBS_sens
2L	14178264	2L_14178264_SNP [dm3] 2L_14178264_SNP [dm6]	C	A	2.556e^-4	0.843	INTRON CG43333
3R	21759360	3R_21759360_SNP [dm3] 3R_25933638_SNP [dm6]	G	A	2.568e^-4	0.843	INTRON CCAP-R
3R	17062600	3R_17062600_SNP [dm3] 3R_21236878_SNP [dm6]	A	T	2.572e^-4	0.843	INTRON e
3R	18971322	3R_18971322_SNP [dm3] 3R_23145600_SNP [dm6]	G	T	2.572e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	11208316	3L_11208316_SNP [dm3] 3L_11215216_SNP [dm6]	A	T	2.572e^-4	0.843	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	15306931	3L_15306931_SNP [dm3] 3L_15313831_SNP [dm6]	A	C	2.581e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19256668	2R_19256668_SNP [dm3] 2R_23369145_SNP [dm6]	A	G	2.587e^-4	0.843	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
3R	22946190	3R_22946190_SNP [dm3] 3R_27120468_SNP [dm6]	C	T	2.594e^-4	0.843	SYNONYMOUS_CODING CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20014595	2R_20014595_SNP [dm3] 2R_24127072_SNP [dm6]	A	C	2.595e^-4	0.843	UTR_3_PRIME tamo UPSTREAM CG43775 & 2 others DOWNSTREAM tamo
3R	12691649	3R_12691649_SNP [dm3] 3R_16865927_SNP [dm6]	G	A	2.610e^-4	0.843	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8834671	2R_8834671_SNP [dm3] 2R_12947166_SNP [dm6]	T	A	2.612e^-4	0.843	UPSTREAM Mdr49 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10051635	X_10051635_SNP [dm3] X_10157602_SNP [dm6]	G	T	2.626e^-4	0.843	UPSTREAM CG43902 INTRON CR44894	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12585656	3L_12585656_SNP [dm3] 3L_12592556_SNP [dm6]	G	T	2.628e^-4	0.843	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24449216	3R_24449216_SNP [dm3] 3R_28623494_SNP [dm6]	C	T	2.630e^-4	0.843	INTRON CG10011
3R	18706536	3R_18706536_INS [dm3] 3R_22880814_INS [dm6]	C	CC	2.654e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26705659	3R_26705659_SNP [dm3] 3R_30879937_SNP [dm6]	T	C	2.664e^-4	0.843	INTRON CG12071	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2265904	3L_2265904_SNP [dm3] 3L_2265904_SNP [dm6]	G	A	2.669e^-4	0.843	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22576969	3R_22576969_SNP [dm3] 3R_26751247_SNP [dm6]	G	A	2.670e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7088900	X_7088900_DEL [dm3] X_7194867_DEL [dm6]	GG	G	2.672e^-4	0.843	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21901286	2L_21901286_SNP [dm3] 2L_21901286_SNP [dm6]	A	C	2.677e^-4	0.843	INTERGENIC
3R	12691650	3R_12691650_SNP [dm3] 3R_16865928_SNP [dm6]	A	T	2.680e^-4	0.843	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	900945	3R_900945_SNP [dm3] 3R_5075223_SNP [dm6]	A	C	2.682e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14638016	X_14638016_SNP [dm3] X_14743983_SNP [dm6]	A	G	2.685e^-4	0.843	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4458905	2L_4458905_SNP [dm3] 2L_4458905_SNP [dm6]	G	A	2.689e^-4	0.843	UTR_3_PRIME mRpL27 UPSTREAM RpL27A & 1 other DOWNSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4418940	2L_4418940_SNP [dm3] 2L_4418940_SNP [dm6]	G	A	2.696e^-4	0.843	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	13718769	2L_13718769_SNP [dm3] 2L_13718769_SNP [dm6]	A	C	2.699e^-4	0.843	INTERGENIC
2L	17557365	2L_17557365_SNP [dm3] 2L_17557365_SNP [dm6]	T	A	2.702e^-4	0.843	INTERGENIC
3L	7820519	3L_7820519_SNP [dm3] 3L_7827419_SNP [dm6]	T	G	2.703e^-4	0.843	INTRON Pdp1
3L	3516274	3L_3516274_SNP [dm3] 3L_3516274_SNP [dm6]	T	A	2.706e^-4	0.843	UTR_5_PRIME Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14612532	2R_14612532_SNP [dm3] 2R_18725027_SNP [dm6]	C	A	2.723e^-4	0.843	INTRON Hs3st-A
3L	2839224	3L_2839224_DEL [dm3] 3L_2839224_DEL [dm6]	TT	T	2.728e^-4	0.843	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
X	9429246	X_9429246_SNP [dm3] X_9535213_SNP [dm6]	T	C	2.730e^-4	0.843	DOWNSTREAM CG34026 INTRON CG32700
2L	21076234	2L_21076234_SNP [dm3] 2L_21076234_SNP [dm6]	T	A	2.733e^-4	0.843	INTRON tadr
2R	11576673	2R_11576673_DEL [dm3] 2R_15689168_DEL [dm6]	AA	A	2.736e^-4	0.843	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13343100	2R_13343100_SNP [dm3] 2R_17455595_SNP [dm6]	T	G	2.764e^-4	0.843	NON_SYNONYMOUS_CODING CG10764 UPSTREAM robl DOWNSTREAM robls54B
3R	21277635	3R_21277635_SNP [dm3] 3R_25451913_SNP [dm6]	C	T	2.765e^-4	0.843	INTRON Fur1
2R	2852151	2R_2852151_SNP [dm3] 2R_6964646_SNP [dm6]	T	C	2.777e^-4	0.843	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13242749	3L_13242749_SNP [dm3] 3L_13249649_SNP [dm6]	A	C	2.791e^-4	0.843	UPSTREAM CG32119 DOWNSTREAM tRNA:D2:69F INTRON caps
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	2.792e^-4	0.843	INTRON CG7781
3L	3013203	3L_3013203_SNP [dm3] 3L_3013203_SNP [dm6]	G	T	2.793e^-4	0.843	INTERGENIC
3L	14346287	3L_14346287_SNP [dm3] 3L_14353187_SNP [dm6]	G	A	2.794e^-4	0.843	INTRON fz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15380611	3R_15380611_SNP [dm3] 3R_19554889_SNP [dm6]	G	A	2.799e^-4	0.843	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26462627	3R_26462627_SNP [dm3] 3R_30636905_SNP [dm6]	C	T	2.806e^-4	0.843	INTERGENIC
3L	15931741	3L_15931741_SNP [dm3] 3L_15938641_SNP [dm6]	G	T	2.807e^-4	0.843	INTRON Pka-C3
3R	24969624	3R_24969624_SNP [dm3] 3R_29143902_SNP [dm6]	C	T	2.813e^-4	0.843	SPLICE_SITE_REGION CG14516 INTRON CG14516
3R	18541877	3R_18541877_SNP [dm3] 3R_22716155_SNP [dm6]	A	T	2.822e^-4	0.843	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9046291	3L_9046291_SNP [dm3] 3L_9053191_SNP [dm6]	C	T	2.823e^-4	0.843	INTRON Argk	TF binding site mE1_TFBS_HSA
2L	17557336	2L_17557336_SNP [dm3] 2L_17557336_SNP [dm6]	A	G	2.829e^-4	0.843	INTERGENIC
3L	13954469	3L_13954469_SNP [dm3] 3L_13961369_SNP [dm6]	G	A	2.830e^-4	0.843	SYNONYMOUS_CODING CG32137	TF binding site BDTNP1_TFBS_hb
2R	16686731	2R_16686731_SNP [dm3] 2R_20799226_SNP [dm6]	A	T	2.831e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20273463	3R_20273463_SNP [dm3] 3R_24447741_SNP [dm6]	G	A	2.833e^-4	0.843	INTRON nAChRalpha1
2R	15768435	2R_15768435_DEL [dm3] 2R_19880930_DEL [dm6]	TAAAGATACCA...	T	2.834e^-4	0.843	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	10342100	3R_10342100_SNP [dm3] 3R_14516378_SNP [dm6]	A	G	2.847e^-4	0.843	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
3L	17887830	3L_17887830_DEL [dm3] 3L_17894730_DEL [dm6]	CAC	T	2.847e^-4	0.843	INTRON Tsp74F
3R	26075417	3R_26075417_SNP [dm3] 3R_30249695_SNP [dm6]	G	A	2.855e^-4	0.843	NON_SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
X	18826412	X_18826412_SNP [dm3] X_18932379_SNP [dm6]	C	T	2.869e^-4	0.843	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23306016	3R_23306016_SNP [dm3] 3R_27480294_SNP [dm6]	G	T	2.876e^-4	0.843	UTR_3_PRIME Cyp6a18
3L	16736775	3L_16736775_SNP [dm3] 3L_16743675_SNP [dm6]	T	C	2.879e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	21208775	3R_21208775_SNP [dm3] 3R_25383053_SNP [dm6]	A	C	2.879e^-4	0.843	UPSTREAM CG31437 & 1 other INTRON Fur1
3R	7491038	3R_7491038_SNP [dm3] 3R_11665316_SNP [dm6]	G	T	2.880e^-4	0.843	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7491061	3R_7491061_SNP [dm3] 3R_11665339_SNP [dm6]	C	G	2.880e^-4	0.843	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18643690	X_18643690_SNP [dm3] X_18749657_SNP [dm6]	G	T	2.882e^-4	0.843	INTERGENIC
3L	21272395	3L_21272395_SNP [dm3] 3L_21279295_SNP [dm6]	G	A	2.898e^-4	0.843	INTRON AcCoAS	TF binding site mE1_TFBS_sens
3R	19332285	3R_19332285_SNP [dm3] 3R_23506563_SNP [dm6]	C	T	2.904e^-4	0.843	DOWNSTREAM CG34289 INTERGENIC
2R	16736212	2R_16736212_SNP [dm3] 2R_20848707_SNP [dm6]	A	G	2.918e^-4	0.843	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
2L	1987709	2L_1987709_SNP [dm3] 2L_1987709_SNP [dm6]	T	C	2.920e^-4	0.843	START_GAINED Got2 UTR_5_PRIME Got2 UPSTREAM Got2 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14163338	2R_14163338_SNP [dm3] 2R_18275833_SNP [dm6]	A	G	2.928e^-4	0.843	NON_SYNONYMOUS_CODING Ote	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9674036	3R_9674036_SNP [dm3] 3R_13848314_SNP [dm6]	T	A	2.939e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8798673	2R_8798673_SNP [dm3] 2R_12911168_SNP [dm6]	C	T	2.944e^-4	0.843	INTERGENIC
X	7511053	X_7511053_SNP [dm3] X_7617020_SNP [dm6]	C	A	2.952e^-4	0.843	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21998975	2L_21998975_INS [dm3] 2L_21998975_INS [dm6]	A	AACATTTCCGTTTCTCGGTT...	2.953e^-4	0.843	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
X	10619668	X_10619668_SNP [dm3] X_10725635_SNP [dm6]	A	G	2.961e^-4	0.843	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2694964	3R_2694964_SNP [dm3] 3R_6869242_SNP [dm6]	A	C	2.965e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21895682	2L_21895682_SNP [dm3] 2L_21895682_SNP [dm6]	A	G	2.968e^-4	0.843	DOWNSTREAM CR43762 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	11212868	3L_11212868_SNP [dm3] 3L_11219768_SNP [dm6]	A	G	2.972e^-4	0.843	INTRON CG42671
3L	10672437	3L_10672437_SNP [dm3] 3L_10679337_SNP [dm6]	G	C	2.972e^-4	0.843	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14257197	3L_14257197_SNP [dm3] 3L_14264097_SNP [dm6]	C	T	2.974e^-4	0.843	INTERGENIC
X	5810978	X_5810978_SNP [dm3] X_5916945_SNP [dm6]	C	A	2.978e^-4	0.843	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8430672	2R_8430672_SNP [dm3] 2R_12543167_SNP [dm6]	C	T	2.981e^-4	0.843	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10954840	3R_10954840_SNP [dm3] 3R_15129118_SNP [dm6]	G	T	2.991e^-4	0.843	INTRON CG42788
2R	19062801	2R_19062801_SNP [dm3] 2R_23175278_SNP [dm6]	C	T	2.995e^-4	0.843	INTRON CG34371	TF binding site BDTNP1_TFBS_da
3L	15166302	3L_15166302_DEL [dm3] 3L_15173202_DEL [dm6]	TACAT	T	3.004e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	687711	3L_687711_SNP [dm3] 3L_687711_SNP [dm6]	G	A	3.004e^-4	0.843	DOWNSTREAM CG32483 INTRON CG3344
3L	1190565	3L_1190565_SNP [dm3] 3L_1190565_SNP [dm6]	G	T	3.007e^-4	0.843	UTR_3_PRIME Trh DOWNSTREAM CG13912
3R	26885919	3R_26885919_SNP [dm3] 3R_31060197_SNP [dm6]	C	T	3.008e^-4	0.843	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	22574641	3R_22574641_SNP [dm3] 3R_26748919_SNP [dm6]	T	A	3.009e^-4	0.843	INTERGENIC
2L	3972893	2L_3972893_SNP [dm3] 2L_3972893_SNP [dm6]	T	C	3.018e^-4	0.843	INTRON fred
3L	13190855	3L_13190855_SNP [dm3] 3L_13197755_SNP [dm6]	C	G	3.022e^-4	0.843	INTERGENIC	silencer mE1_HDAC_PRE
2L	21897589	2L_21897589_SNP [dm3] 2L_21897589_SNP [dm6]	C	T	3.025e^-4	0.843	NON_SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15850563	3R_15850563_SNP [dm3] 3R_20024841_SNP [dm6]	T	A	3.025e^-4	0.843	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	512404	2L_512404_SNP [dm3] 2L_512404_SNP [dm6]	T	C	3.026e^-4	0.843	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	26086126	3R_26086126_INS [dm3] 3R_30260404_INS [dm6]	A	AGCCAC	3.027e^-4	0.843	INTERGENIC
2R	8430571	2R_8430571_SNP [dm3] 2R_12543066_SNP [dm6]	T	C	3.030e^-4	0.843	INTRON fra	TF binding site BDTNP1_TFBS_da
3R	24026696	3R_24026696_SNP [dm3] 3R_28200974_SNP [dm6]	T	C	3.032e^-4	0.843	INTRON CG34354
3R	22611519	3R_22611519_SNP [dm3] 3R_26785797_SNP [dm6]	C	T	3.032e^-4	0.843	DOWNSTREAM CG42790 INTERGENIC
2L	16241568	2L_16241568_SNP [dm3] 2L_16241568_SNP [dm6]	G	A	3.037e^-4	0.843	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
3L	5327272	3L_5327272_SNP [dm3] 3L_5334172_SNP [dm6]	C	T	3.043e^-4	0.843	UPSTREAM CR45742 INTERGENIC
2L	1201837	2L_1201837_SNP [dm3] 2L_1201837_SNP [dm6]	G	A	3.043e^-4	0.843	DOWNSTREAM CG5011 INTERGENIC
3R	25359330	3R_25359330_SNP [dm3] 3R_29533608_SNP [dm6]	T	G	3.046e^-4	0.843	INTERGENIC
3L	5327322	3L_5327322_SNP [dm3] 3L_5334222_SNP [dm6]	A	C	3.049e^-4	0.843	UPSTREAM CR45742 INTERGENIC
X	9203654	X_9203654_SNP [dm3] X_9309621_SNP [dm6]	A	C	3.051e^-4	0.843	INTERGENIC
X	9203656	X_9203656_INS [dm3] X_9309623_INS [dm6]	A	ACTTTTTTAAAG...	3.051e^-4	0.843	INTERGENIC
2R	16686707	2R_16686707_DEL [dm3] 2R_20799202_DEL [dm6]	TGT	T	3.056e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10617672	2R_10617672_SNP [dm3] 2R_14730167_SNP [dm6]	G	A	3.056e^-4	0.843	INTERGENIC
2R	16758224	2R_16758224_SNP [dm3] 2R_20870719_SNP [dm6]	T	A	3.057e^-4	0.843	UPSTREAM Ipk1 DOWNSTREAM IM14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	10673091	3L_10673091_SNP [dm3] 3L_10679991_SNP [dm6]	A	T	3.059e^-4	0.843	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21296195	X_21296195_SNP [dm3] X_21425168_SNP [dm6]	C	T	3.061e^-4	0.843	SYNONYMOUS_CODING CG42343	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13428529	3L_13428529_SNP [dm3] 3L_13435429_SNP [dm6]	G	T	3.062e^-4	0.843	UPSTREAM CG10713 DOWNSTREAM CG10154 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20671188	2L_20671188_SNP [dm3] 2L_20671188_SNP [dm6]	C	G	3.075e^-4	0.843	INTRON CG31678
3R	22595119	3R_22595119_SNP [dm3] 3R_26769397_SNP [dm6]	T	C	3.080e^-4	0.843	EXON CR45563
X	10262122	X_10262122_SNP [dm3] X_10368089_SNP [dm6]	G	A	3.090e^-4	0.843	UTR_5_PRIME CG17841 UPSTREAM CG32679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12243043	2R_12243043_SNP [dm3] 2R_16355538_SNP [dm6]	T	A	3.096e^-4	0.843	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15973351	X_15973351_SNP [dm3] X_16079318_SNP [dm6]	G	A	3.109e^-4	0.843	UTR_3_PRIME Tob
3L	5333207	3L_5333207_SNP [dm3] 3L_5340107_SNP [dm6]	A	G	3.113e^-4	0.843	INTERGENIC
3R	26700729	3R_26700729_SNP [dm3] 3R_30875007_SNP [dm6]	G	A	3.122e^-4	0.843	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4418899	2L_4418899_SNP [dm3] 2L_4418899_SNP [dm6]	A	G	3.127e^-4	0.843	DOWNSTREAM tRNA:CR31963 INTRON CG15431
3R	26592337	3R_26592337_SNP [dm3] 3R_30766615_SNP [dm6]	T	A	3.128e^-4	0.843	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24954576	3R_24954576_SNP [dm3] 3R_29128854_SNP [dm6]	G	A	3.128e^-4	0.843	SYNONYMOUS_CODING dgt6 DOWNSTREAM CG11880	TF binding site mE1_TFBS_cad
3R	9716895	3R_9716895_SNP [dm3] 3R_13891173_SNP [dm6]	G	A	3.135e^-4	0.843	INTERGENIC
2R	16716907	2R_16716907_SNP [dm3] 2R_20829402_SNP [dm6]	A	G	3.135e^-4	0.843	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3033276	X_3033276_SNP [dm3] X_3139243_SNP [dm6]	A	G	3.136e^-4	0.843	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2335593	2L_2335593_SNP [dm3] 2L_2335593_SNP [dm6]	G	C	3.137e^-4	0.843	INTRON CG9967 & 1 other
3L	9579314	3L_9579314_SNP [dm3] 3L_9586214_SNP [dm6]	T	A	3.146e^-4	0.843	INTRON CG42673
2L	9798717	2L_9798717_DEL [dm3] 2L_9798717_DEL [dm6]	GCTTGTATGG	G	3.148e^-4	0.843	INTRON nAChRalpha6
3L	5327271	3L_5327271_SNP [dm3] 3L_5334171_SNP [dm6]	G	C	3.155e^-4	0.843	UPSTREAM CR45742 INTERGENIC
2R	14712544	2R_14712544_SNP [dm3] 2R_18825039_SNP [dm6]	G	C	3.168e^-4	0.843	INTRON CG15097	TF binding site mE1_TFBS_chinmo
X	20444620	X_20444620_SNP [dm3] X_20573593_SNP [dm6]	C	G	3.170e^-4	0.843	UPSTREAM CG42580 INTERGENIC
3R	21173590	3R_21173590_SNP [dm3] 3R_25347868_SNP [dm6]	G	A	3.173e^-4	0.843	NON_SYNONYMOUS_CODING Fur1 UPSTREAM tobi
X	11951161	X_11951161_SNP [dm3] X_12057128_SNP [dm6]	A	G	3.180e^-4	0.843	UPSTREAM Uch-L5R INTRON CR43960 & 1 other
2R	17016682	2R_17016682_SNP [dm3] 2R_21129177_SNP [dm6]	C	T	3.184e^-4	0.843	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6002641	2R_6002641_SNP [dm3] 2R_10115136_SNP [dm6]	T	C	3.185e^-4	0.843	INTRON Pfk
2R	14882258	2R_14882258_SNP [dm3] 2R_18994753_SNP [dm6]	G	T	3.189e^-4	0.843	INTRON tn EXON snoRNA:abba-a
3R	22216509	3R_22216509_SNP [dm3] 3R_26390787_SNP [dm6]	C	A	3.189e^-4	0.843	INTERGENIC
2L	9982092	2L_9982092_SNP [dm3] 2L_9982092_SNP [dm6]	T	A	3.190e^-4	0.843	INTERGENIC
2L	9905664	2L_9905664_SNP [dm3] 2L_9905664_SNP [dm6]	T	A	3.191e^-4	0.843	INTRON CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8715178	3R_8715178_SNP [dm3] 3R_12889456_SNP [dm6]	A	G	3.192e^-4	0.843	INTERGENIC
X	9203599	X_9203599_SNP [dm3] X_9309566_SNP [dm6]	T	C	3.200e^-4	0.843	INTERGENIC
3L	5327045	3L_5327045_SNP [dm3] 3L_5333945_SNP [dm6]	A	C	3.203e^-4	0.843	UPSTREAM CR45742 INTERGENIC
2L	4429466	2L_4429466_SNP [dm3] 2L_4429466_SNP [dm6]	T	C	3.204e^-4	0.843	INTRON CG15431
3L	8437704	3L_8437704_DEL [dm3] 3L_8444604_DEL [dm6]	TATAAAT	T	3.211e^-4	0.843	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8437716	3L_8437716_SNP [dm3] 3L_8444616_SNP [dm6]	A	T	3.211e^-4	0.843	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8683603	2L_8683603_SNP [dm3] 2L_8683603_SNP [dm6]	A	T	3.216e^-4	0.843	DOWNSTREAM tRNA:CR31888 & 1 other INTRON CG9289
X	9429489	X_9429489_SNP [dm3] X_9535456_SNP [dm6]	T	A	3.217e^-4	0.843	DOWNSTREAM CG34026 INTRON CG32700
2L	4213440	2L_4213440_SNP [dm3] 2L_4213440_SNP [dm6]	C	T	3.226e^-4	0.843	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15423117	2R_15423117_SNP [dm3] 2R_19535612_SNP [dm6]	G	C	3.232e^-4	0.843	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9658886	2R_9658886_INS [dm3] 2R_13771381_INS [dm6]	A	AA	3.238e^-4	0.843	INTRON Cpr50Ca
3L	1255295	3L_1255295_SNP [dm3] 3L_1255295_SNP [dm6]	T	C	3.239e^-4	0.843	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8915776	3L_8915776_SNP [dm3] 3L_8922676_SNP [dm6]	A	G	3.242e^-4	0.843	INTRON Tsp66E
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	3.251e^-4	0.843	INTERGENIC
3R	10974434	3R_10974434_SNP [dm3] 3R_15148712_SNP [dm6]	T	C	3.251e^-4	0.843	INTERGENIC
3L	2313303	3L_2313303_SNP [dm3] 3L_2313303_SNP [dm6]	G	A	3.256e^-4	0.843	INTERGENIC
2L	14559665	2L_14559665_SNP [dm3] 2L_14559665_SNP [dm6]	A	C	3.257e^-4	0.843	UPSTREAM CR44854 INTERGENIC
3R	26354577	3R_26354577_INS [dm3] 3R_30528855_INS [dm6]	AA	CCATATGTT	3.265e^-4	0.843	DOWNSTREAM CR45552 INTRON CR45552
2L	19821351	2L_19821351_SNP [dm3] 2L_19821351_SNP [dm6]	T	G	3.265e^-4	0.843	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9674047	3R_9674047_SNP [dm3] 3R_13848325_SNP [dm6]	A	G	3.266e^-4	0.843	INTERGENIC
3R	16371494	3R_16371494_SNP [dm3] 3R_20545772_SNP [dm6]	C	T	3.267e^-4	0.843	INTRON Stat92E
X	16517346	X_16517346_SNP [dm3] X_16623313_SNP [dm6]	C	T	3.273e^-4	0.843	DOWNSTREAM Rok INTERGENIC
3L	21352193	3L_21352193_SNP [dm3] 3L_21359093_SNP [dm6]	G	A	3.274e^-4	0.843	SYNONYMOUS_CODING CG32437	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22216511	3R_22216511_SNP [dm3] 3R_26390789_SNP [dm6]	T	A	3.284e^-4	0.843	INTERGENIC
3L	3711173	3L_3711173_MNP [dm3] 3L_3711173_MNP [dm6]	GCAG	TTGC	3.291e^-4	0.843	INTERGENIC
3L	3711178	3L_3711178_SNP [dm3] 3L_3711178_SNP [dm6]	G	C	3.291e^-4	0.843	INTERGENIC
3L	3711180	3L_3711180_MNP [dm3] 3L_3711180_MNP [dm6]	CACAAAAA	TTTTTGTG	3.291e^-4	0.843	INTERGENIC
3R	25990995	3R_25990995_SNP [dm3] 3R_30165273_SNP [dm6]	C	G	3.292e^-4	0.843	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16045399	3R_16045399_SNP [dm3] 3R_20219677_SNP [dm6]	G	T	3.296e^-4	0.843	INTRON Nlg4
3R	24372806	3R_24372806_SNP [dm3] 3R_28547084_SNP [dm6]	T	C	3.306e^-4	0.843	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11855636	2L_11855636_SNP [dm3] 2L_11855636_SNP [dm6]	A	C	3.306e^-4	0.843	INTRON Pde1c
2L	19825453	2L_19825453_SNP [dm3] 2L_19825453_SNP [dm6]	G	A	3.314e^-4	0.843	INTRON sick
3L	16033974	3L_16033974_SNP [dm3] 3L_16040874_SNP [dm6]	G	A	3.326e^-4	0.843	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14897795	2R_14897795_SNP [dm3] 2R_19010290_SNP [dm6]	T	C	3.328e^-4	0.843	INTERGENIC
2L	20723672	2L_20723672_SNP [dm3] 2L_20723672_SNP [dm6]	T	C	3.342e^-4	0.843	DOWNSTREAM CG9316 INTERGENIC
X	20349880	X_20349880_SNP [dm3] X_20478853_SNP [dm6]	A	T	3.343e^-4	0.843	INTRON RhoGAP19D
2R	15768433	2R_15768433_SNP [dm3] 2R_19880928_SNP [dm6]	A	C	3.345e^-4	0.843	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	23424920	3R_23424920_SNP [dm3] 3R_27599198_SNP [dm6]	A	G	3.356e^-4	0.843	INTRON dsd
3L	22889212	3L_22889212_SNP [dm3] 3L_22896112_SNP [dm6]	C	A	3.369e^-4	0.843	UPSTREAM CR44688 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17603473	2R_17603473_SNP [dm3] 2R_21715968_SNP [dm6]	C	T	3.370e^-4	0.843	UTR_3_PRIME HmgD DOWNSTREAM Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	464730	3L_464730_SNP [dm3] 3L_464730_SNP [dm6]	C	T	3.377e^-4	0.843	INTRON klar
3R	8060936	3R_8060936_SNP [dm3] 3R_12235214_SNP [dm6]	C	T	3.380e^-4	0.843	NON_SYNONYMOUS_CODING Cyp313a2 UPSTREAM Cyp313a5
2R	20198159	2R_20198159_SNP [dm3] 2R_24310636_SNP [dm6]	T	G	3.382e^-4	0.843	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3R	20369121	3R_20369121_SNP [dm3] 3R_24543399_SNP [dm6]	C	G	3.382e^-4	0.843	UTR_5_PRIME CG5789 INTRON CG5789
3R	21912856	3R_21912856_SNP [dm3] 3R_26087134_SNP [dm6]	C	T	3.390e^-4	0.843	INTRON dys
3R	21978403	3R_21978403_SNP [dm3] 3R_26152681_SNP [dm6]	A	G	3.391e^-4	0.843	INTERGENIC
2L	11275067	2L_11275067_SNP [dm3] 2L_11275067_SNP [dm6]	T	C	3.395e^-4	0.843	SYNONYMOUS_CODING cana	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24950647	3R_24950647_SNP [dm3] 3R_29124925_SNP [dm6]	G	A	3.400e^-4	0.843	INTRON CG11880
3L	9840034	3L_9840034_SNP [dm3] 3L_9846934_SNP [dm6]	T	G	3.401e^-4	0.843	INTRON RasGAP1
X	16694919	X_16694919_DEL [dm3] X_16800886_DEL [dm6]	TAACATT	T	3.407e^-4	0.843	UPSTREAM CG4789 & 1 other INTERGENIC
3L	8384876	3L_8384876_SNP [dm3] 3L_8391776_SNP [dm6]	C	T	3.412e^-4	0.843	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20026877	2R_20026877_SNP [dm3] 2R_24139354_SNP [dm6]	T	C	3.419e^-4	0.843	UPSTREAM Dat DOWNSTREAM CR44826 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	18689417	2R_18689417_SNP [dm3] 2R_22801912_SNP [dm6]	T	C	3.421e^-4	0.843	UTR_3_PRIME blw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9325500	3R_9325500_SNP [dm3] 3R_13499778_SNP [dm6]	T	A	3.422e^-4	0.843	INTERGENIC
2L	14559664	2L_14559664_SNP [dm3] 2L_14559664_SNP [dm6]	C	A	3.425e^-4	0.843	UPSTREAM CR44854 INTERGENIC
3L	3517408	3L_3517408_SNP [dm3] 3L_3517408_SNP [dm6]	C	T	3.428e^-4	0.843	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi
3R	13462846	3R_13462846_SNP [dm3] 3R_17637124_SNP [dm6]	A	G	3.438e^-4	0.843	INTRON CG43175
3R	13669622	3R_13669622_SNP [dm3] 3R_17843900_SNP [dm6]	C	T	3.445e^-4	0.843	INTRON tinc
3R	25465246	3R_25465246_SNP [dm3] 3R_29639524_SNP [dm6]	T	C	3.445e^-4	0.843	INTRON Dop1R2
2R	14989274	2R_14989274_SNP [dm3] 2R_19101769_SNP [dm6]	T	C	3.452e^-4	0.843	INTRON 5-HT1A
3R	24656158	3R_24656158_SNP [dm3] 3R_28830436_SNP [dm6]	C	G	3.474e^-4	0.843	INTRON WASp
2R	13846170	2R_13846170_SNP [dm3] 2R_17958665_SNP [dm6]	A	T	3.493e^-4	0.843	INTERGENIC
3R	3416688	3R_3416688_SNP [dm3] 3R_7590966_SNP [dm6]	T	C	3.494e^-4	0.843	INTRON CG34127
2L	17557393	2L_17557393_SNP [dm3] 2L_17557393_SNP [dm6]	C	A	3.495e^-4	0.843	INTERGENIC
2L	22043672	2L_22043672_SNP [dm3] 2L_22043672_SNP [dm6]	C	T	3.500e^-4	0.843	NON_SYNONYMOUS_CODING CG31601
3L	4127886	3L_4127886_DEL [dm3] 3L_4127886_DEL [dm6]	CTAACA	C	3.502e^-4	0.843	INTRON ens
X	7818730	X_7818730_SNP [dm3] X_7924697_SNP [dm6]	A	C	3.504e^-4	0.843	UTR_3_PRIME CG10777
2R	9658889	2R_9658889_SNP [dm3] 2R_13771384_SNP [dm6]	C	T	3.506e^-4	0.843	INTRON Cpr50Ca
3L	2598523	3L_2598523_SNP [dm3] 3L_2598523_SNP [dm6]	G	A	3.512e^-4	0.843	SYNONYMOUS_CODING CG12182 UPSTREAM CG16985
3R	26524669	3R_26524669_SNP [dm3] 3R_30698947_SNP [dm6]	C	A	3.512e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18765485	2R_18765485_SNP [dm3] 2R_22877962_SNP [dm6]	C	T	3.517e^-4	0.843	INTRON PIP5K59B
X	17101233	X_17101233_SNP [dm3] X_17207200_SNP [dm6]	C	T	3.520e^-4	0.843	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20368991	3R_20368991_SNP [dm3] 3R_24543269_SNP [dm6]	A	T	3.522e^-4	0.843	INTRON CG5789
2R	6825299	2R_6825299_SNP [dm3] 2R_10937794_SNP [dm6]	G	A	3.525e^-4	0.843	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10527359	2L_10527359_SNP [dm3] 2L_10527359_SNP [dm6]	T	A	3.529e^-4	0.843	UPSTREAM Lip4 INTERGENIC
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	3.530e^-4	0.843	INTRON aret
3R	19391657	3R_19391657_SNP [dm3] 3R_23565935_SNP [dm6]	A	G	3.531e^-4	0.843	INTRON beat-IV
3R	17716520	3R_17716520_SNP [dm3] 3R_21890798_SNP [dm6]	T	G	3.531e^-4	0.843	DOWNSTREAM CR43844 INTRON CG6678
3R	26427451	3R_26427451_SNP [dm3] 3R_30601729_SNP [dm6]	G	A	3.540e^-4	0.843	UPSTREAM CG31021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	20022282	2R_20022282_SNP [dm3] 2R_24134759_SNP [dm6]	G	A	3.541e^-4	0.843	SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065	TF binding site mE1_TFBS_sens
3R	3553660	3R_3553660_SNP [dm3] 3R_7727938_SNP [dm6]	T	G	3.542e^-4	0.843	INTERGENIC
3R	21280268	3R_21280268_SNP [dm3] 3R_25454546_SNP [dm6]	G	C	3.551e^-4	0.843	INTRON Fur1
2L	14721383	2L_14721383_SNP [dm3] 2L_14721383_SNP [dm6]	T	C	3.553e^-4	0.843	INTERGENIC
3R	20368664	3R_20368664_SNP [dm3] 3R_24542942_SNP [dm6]	C	T	3.554e^-4	0.843	INTRON CG5789
2L	3543547	2L_3543547_SNP [dm3] 2L_3543547_SNP [dm6]	C	G	3.560e^-4	0.843	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	16383825	2L_16383825_SNP [dm3] 2L_16383825_SNP [dm6]	T	G	3.571e^-4	0.843	INTERGENIC
X	9203655	X_9203655_SNP [dm3] X_9309622_SNP [dm6]	T	C	3.573e^-4	0.843	INTERGENIC
3L	17241096	3L_17241096_SNP [dm3] 3L_17247996_SNP [dm6]	A	G	3.575e^-4	0.843	INTRON CR43870
X	10177766	X_10177766_SNP [dm3] X_10283733_SNP [dm6]	T	C	3.575e^-4	0.843	INTRON alpha-Man-I
X	9429233	X_9429233_SNP [dm3] X_9535200_SNP [dm6]	C	G	3.579e^-4	0.843	DOWNSTREAM CG34026 INTRON CG32700
3R	21892071	3R_21892071_DEL [dm3] 3R_26066349_DEL [dm6]	TT	T	3.581e^-4	0.843	INTERGENIC
3R	23181976	3R_23181976_SNP [dm3] 3R_27356254_SNP [dm6]	C	A	3.583e^-4	0.843	INTRON CG42534
2R	15214773	2R_15214773_SNP [dm3] 2R_19327268_SNP [dm6]	T	C	3.595e^-4	0.843	SYNONYMOUS_CODING Rgk1	TF binding site mE1_TFBS_chinmo
X	12941422	X_12941422_SNP [dm3] X_13047389_SNP [dm6]	G	A	3.595e^-4	0.843	INTRON rad
2R	18095520	2R_18095520_SNP [dm3] 2R_22208015_SNP [dm6]	A	G	3.596e^-4	0.843	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21173637	3R_21173637_SNP [dm3] 3R_25347915_SNP [dm6]	T	A	3.605e^-4	0.843	SYNONYMOUS_CODING Fur1 UPSTREAM tobi
3L	10669286	3L_10669286_SNP [dm3] 3L_10676186_SNP [dm6]	G	A	3.606e^-4	0.843	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4418727	2L_4418727_SNP [dm3] 2L_4418727_SNP [dm6]	A	G	3.610e^-4	0.843	DOWNSTREAM tRNA:CR31963 INTRON CG15431
X	12255272	X_12255272_SNP [dm3] X_12361239_SNP [dm6]	T	C	3.616e^-4	0.843	INTERGENIC
2R	15214632	2R_15214632_SNP [dm3] 2R_19327127_SNP [dm6]	T	A	3.625e^-4	0.843	SYNONYMOUS_CODING Rgk1	TF binding site mE1_TFBS_chinmo
2R	12401227	2R_12401227_SNP [dm3] 2R_16513722_SNP [dm6]	A	G	3.634e^-4	0.843	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	17466523	2L_17466523_SNP [dm3] 2L_17466523_SNP [dm6]	A	C	3.637e^-4	0.843	INTRON BicD
X	15043321	X_15043321_DEL [dm3] X_15149288_DEL [dm6]	CCATAGATGATC...	C	3.643e^-4	0.843	INTRON CG9095
3R	25804520	3R_25804520_SNP [dm3] 3R_29978798_SNP [dm6]	C	A	3.649e^-4	0.843	INTERGENIC
3R	9527750	3R_9527750_SNP [dm3] 3R_13702028_SNP [dm6]	T	A	3.649e^-4	0.843	SYNONYMOUS_CODING ninaB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25233696	3R_25233696_SNP [dm3] 3R_29407974_SNP [dm6]	G	A	3.652e^-4	0.843	INTRON Ptp99A	TF binding site mE1_TFBS_inv
2R	6084029	2R_6084029_SNP [dm3] 2R_10196524_SNP [dm6]	G	A	3.652e^-4	0.843	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15202327	2L_15202327_SNP [dm3] 2L_15202327_SNP [dm6]	A	T	3.658e^-4	0.843	SPLICE_SITE_REGION CR43357 UPSTREAM Sfp35C EXON CR43357
2L	21933627	2L_21933627_SNP [dm3] 2L_21933627_SNP [dm6]	T	A	3.659e^-4	0.843	INTERGENIC
2R	8834688	2R_8834688_SNP [dm3] 2R_12947183_SNP [dm6]	C	T	3.661e^-4	0.843	UPSTREAM Mdr49 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11294941	3R_11294941_SNP [dm3] 3R_15469219_SNP [dm6]	C	A	3.661e^-4	0.843	INTRON AdamTS-A
2L	12253360	2L_12253360_SNP [dm3] 2L_12253360_SNP [dm6]	T	C	3.665e^-4	0.843	INTRON aret	TF binding site BDTNP1_TFBS_twi
3L	8827025	3L_8827025_SNP [dm3] 3L_8833925_SNP [dm6]	G	C	3.666e^-4	0.843	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10261758	X_10261758_SNP [dm3] X_10367725_SNP [dm6]	C	T	3.667e^-4	0.843	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	14559555	2L_14559555_SNP [dm3] 2L_14559555_SNP [dm6]	T	A	3.669e^-4	0.843	UPSTREAM CR44854 INTERGENIC
X	10261740	X_10261740_SNP [dm3] X_10367707_SNP [dm6]	C	A	3.694e^-4	0.843	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	8235913	X_8235913_SNP [dm3] X_8341880_SNP [dm6]	G	C	3.699e^-4	0.843	INTRON nAChRalpha3
3R	9674086	3R_9674086_INS [dm3] 3R_13848364_INS [dm6]	T	TT	3.706e^-4	0.843	INTERGENIC
X	19081850	X_19081850_SNP [dm3] X_19187817_SNP [dm6]	G	A	3.712e^-4	0.843	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9638009	3L_9638009_SNP [dm3] 3L_9644909_SNP [dm6]	T	C	3.713e^-4	0.843	NON_SYNONYMOUS_CODING CG33696 INTRON fry	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26427448	3R_26427448_SNP [dm3] 3R_30601726_SNP [dm6]	C	A	3.713e^-4	0.843	UPSTREAM CG31021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	23718284	3R_23718284_DEL [dm3] 3R_27892562_DEL [dm6]	TGCTA	C	3.720e^-4	0.843	INTRON CG34353
X	9428598	X_9428598_SNP [dm3] X_9534565_SNP [dm6]	C	T	3.721e^-4	0.843	UTR_3_PRIME CG34026 DOWNSTREAM CG34026 INTRON CG32700
3L	1448386	3L_1448386_SNP [dm3] 3L_1448386_SNP [dm6]	T	A	3.724e^-4	0.843	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13713039	2L_13713039_SNP [dm3] 2L_13713039_SNP [dm6]	G	C	3.731e^-4	0.843	INTRON CG31814
X	8751630	X_8751630_SNP [dm3] X_8857597_SNP [dm6]	G	A	3.736e^-4	0.843	INTRON CG12075
3L	19974809	3L_19974809_SNP [dm3] 3L_19981709_SNP [dm6]	A	G	3.747e^-4	0.843	NON_SYNONYMOUS_CODING CG17732
3R	8935167	3R_8935167_SNP [dm3] 3R_13109445_SNP [dm6]	G	C	3.749e^-4	0.843	INTRON timeout
2L	10083220	2L_10083220_SNP [dm3] 2L_10083220_SNP [dm6]	C	A	3.751e^-4	0.843	INTRON CG44153
3R	10974457	3R_10974457_SNP [dm3] 3R_15148735_SNP [dm6]	T	C	3.752e^-4	0.843	INTERGENIC
2R	14877270	2R_14877270_SNP [dm3] 2R_18989765_SNP [dm6]	T	C	3.753e^-4	0.843	INTRON tn
3R	26393653	3R_26393653_INS [dm3] 3R_30567931_INS [dm6]	A	AG	3.764e^-4	0.843	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1984480	2L_1984480_SNP [dm3] 2L_1984480_SNP [dm6]	T	C	3.765e^-4	0.843	UTR_3_PRIME CG7289 DOWNSTREAM Got2
3L	3800769	3L_3800769_SNP [dm3] 3L_3800769_SNP [dm6]	A	G	3.765e^-4	0.843	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad
3R	25023505	3R_25023505_SNP [dm3] 3R_29197783_SNP [dm6]	C	T	3.766e^-4	0.843	SYNONYMOUS_CODING CG14515	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22611472	3R_22611472_SNP [dm3] 3R_26785750_SNP [dm6]	G	T	3.768e^-4	0.843	UTR_3_PRIME CG42790 DOWNSTREAM CG42790
3R	23926119	3R_23926119_SNP [dm3] 3R_28100397_SNP [dm6]	C	A	3.774e^-4	0.843	INTERGENIC
3L	13252985	3L_13252985_SNP [dm3] 3L_13259885_SNP [dm6]	A	C	3.779e^-4	0.843	INTRON caps
2L	5869553	2L_5869553_SNP [dm3] 2L_5869553_SNP [dm6]	C	A	3.783e^-4	0.843	INTRON rau
3L	8364847	3L_8364847_SNP [dm3] 3L_8371747_SNP [dm6]	G	C	3.796e^-4	0.843	UPSTREAM ImpE1 INTERGENIC
3R	23286816	3R_23286816_SNP [dm3] 3R_27461094_SNP [dm6]	C	A	3.799e^-4	0.843	INTERGENIC
3R	23938539	3R_23938539_SNP [dm3] 3R_28112817_SNP [dm6]	G	A	3.802e^-4	0.843	INTERGENIC
3R	18856710	3R_18856710_SNP [dm3] 3R_23030988_SNP [dm6]	A	C	3.806e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	3485993	3R_3485993_SNP [dm3] 3R_7660271_SNP [dm6]	T	C	3.811e^-4	0.843	INTRON Nlg1
3L	8930246	3L_8930246_SNP [dm3] 3L_8937146_SNP [dm6]	C	G	3.813e^-4	0.843	UTR_3_PRIME orb2 UPSTREAM CG43783 INTRON CG43783
X	10177986	X_10177986_SNP [dm3] X_10283953_SNP [dm6]	C	G	3.817e^-4	0.843	INTRON alpha-Man-I
X	11829877	X_11829877_INS [dm3] X_11935844_INS [dm6]	T	TAGGTGT	3.824e^-4	0.843	UTR_3_PRIME cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	15418493	2R_15418493_SNP [dm3] 2R_19530988_SNP [dm6]	C	A	3.828e^-4	0.843	INTRON sm	TF binding site mE1_TFBS_sens
3R	890178	3R_890178_SNP [dm3] 3R_5064456_SNP [dm6]	G	T	3.835e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5963713	3L_5963713_SNP [dm3] 3L_5970613_SNP [dm6]	T	C	3.836e^-4	0.843	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4338363	3L_4338363_DEL [dm3] 3L_4338363_DEL [dm6]	TT	T	3.836e^-4	0.843	INTRON Cip4	TF binding site mE1_TFBS_inv
X	8722832	X_8722832_SNP [dm3] X_8828799_SNP [dm6]	A	C	3.838e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14154074	X_14154074_SNP [dm3] X_14260041_SNP [dm6]	T	C	3.841e^-4	0.843	INTERGENIC
3R	9938065	3R_9938065_SNP [dm3] 3R_14112343_SNP [dm6]	G	A	3.843e^-4	0.843	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
3R	12682656	3R_12682656_SNP [dm3] 3R_16856934_SNP [dm6]	A	C	3.845e^-4	0.843	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18374658	3L_18374658_DEL [dm3] 3L_18381558_DEL [dm6]	CAAT	C	3.850e^-4	0.843	INTERGENIC
2R	5701676	2R_5701676_SNP [dm3] 2R_9814171_SNP [dm6]	G	A	3.851e^-4	0.843	INTRON CG1648
2L	4213428	2L_4213428_SNP [dm3] 2L_4213428_SNP [dm6]	G	A	3.854e^-4	0.843	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9429157	X_9429157_SNP [dm3] X_9535124_SNP [dm6]	T	G	3.865e^-4	0.843	DOWNSTREAM CG34026 INTRON CG32700
X	9229060	X_9229060_SNP [dm3] X_9335027_SNP [dm6]	T	A	3.870e^-4	0.843	INTRON CG34449
3L	3478479	3L_3478479_SNP [dm3] 3L_3478479_SNP [dm6]	G	T	3.871e^-4	0.843	INTRON CG42324
2R	20729249	2R_20729249_SNP [dm3] 2R_24841726_SNP [dm6]	G	T	3.880e^-4	0.843	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8216120	3L_8216120_SNP [dm3] 3L_8223020_SNP [dm6]	A	C	3.882e^-4	0.843	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23867886	3R_23867886_SNP [dm3] 3R_28042164_SNP [dm6]	C	T	3.884e^-4	0.843	INTRON CG34362
2R	14883636	2R_14883636_SNP [dm3] 2R_18996131_SNP [dm6]	A	T	3.886e^-4	0.843	INTRON tn
3R	22598163	3R_22598163_SNP [dm3] 3R_26772441_SNP [dm6]	A	T	3.892e^-4	0.843	INTERGENIC
X	20815354	X_20815354_SNP [dm3] X_20944327_SNP [dm6]	G	T	3.897e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9872969	3L_9872969_SNP [dm3] 3L_9879869_SNP [dm6]	T	A	3.902e^-4	0.843	INTRON CG34382
3R	21765633	3R_21765633_SNP [dm3] 3R_25939911_SNP [dm6]	C	T	3.903e^-4	0.843	INTRON CCAP-R
2R	9916007	2R_9916007_SNP [dm3] 2R_14028502_SNP [dm6]	A	T	3.908e^-4	0.843	UPSTREAM CG18371 INTRON mam
3R	25137675	3R_25137675_DEL [dm3] 3R_29311953_DEL [dm6]	CCGCTTAATTTTC...	C	3.912e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_sens
3R	22512754	3R_22512754_DEL [dm3] 3R_26687032_DEL [dm6]	CC	C	3.914e^-4	0.843	INTERGENIC
2L	4415280	2L_4415280_SNP [dm3] 2L_4415280_SNP [dm6]	C	T	3.923e^-4	0.843	INTRON CG15431
3R	26106417	3R_26106417_SNP [dm3] 3R_30280695_SNP [dm6]	A	T	3.931e^-4	0.843	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18062598	3L_18062598_SNP [dm3] 3L_18069498_SNP [dm6]	G	A	3.939e^-4	0.843	DOWNSTREAM CG44005 INTRON CG44006
3R	23269692	3R_23269692_SNP [dm3] 3R_27443970_SNP [dm6]	C	T	3.940e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7772732	3L_7772732_SNP [dm3] 3L_7779632_SNP [dm6]	A	C	3.942e^-4	0.843	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
3L	2667705	3L_2667705_SNP [dm3] 3L_2667705_SNP [dm6]	A	G	3.949e^-4	0.843	INTRON Fife
2R	7492119	2R_7492119_SNP [dm3] 2R_11604614_SNP [dm6]	G	A	3.951e^-4	0.843	INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	17158271	3R_17158271_SNP [dm3] 3R_21332549_SNP [dm6]	G	A	3.958e^-4	0.843	INTRON CG16791
3R	22609797	3R_22609797_SNP [dm3] 3R_26784075_SNP [dm6]	T	A	3.970e^-4	0.843	UTR_5_PRIME CG42789 UPSTREAM CG42790
X	19288714	X_19288714_INS [dm3] X_19394681_INS [dm6]	T	TGT	3.972e^-4	0.843	INTRON kek5
3L	9579345	3L_9579345_SNP [dm3] 3L_9586245_SNP [dm6]	A	T	3.974e^-4	0.843	INTRON CG42673
2R	19357621	2R_19357621_SNP [dm3] 2R_23470098_SNP [dm6]	C	G	3.979e^-4	0.843	DOWNSTREAM Or59b INTRON CG43795
3R	22987040	3R_22987040_SNP [dm3] 3R_27161318_SNP [dm6]	C	T	3.985e^-4	0.843	UTR_5_PRIME CG5909
3L	14563913	3L_14563913_SNP [dm3] 3L_14570813_SNP [dm6]	A	G	3.990e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12636876	2R_12636876_SNP [dm3] 2R_16749371_SNP [dm6]	T	A	3.991e^-4	0.843	UPSTREAM Acp53C14a DOWNSTREAM Acp53Ea INTRON Acp53C14b
3R	21748321	3R_21748321_SNP [dm3] 3R_25922599_SNP [dm6]	T	C	3.994e^-4	0.843	UTR_5_PRIME CG14546 DOWNSTREAM CCAP-R
3R	15679635	3R_15679635_SNP [dm3] 3R_19853913_SNP [dm6]	G	A	4.000e^-4	0.843	UTR_3_PRIME CG4662 & 1 other DOWNSTREAM CG4662
2L	9372617	2L_9372617_SNP [dm3] 2L_9372617_SNP [dm6]	T	G	4.001e^-4	0.843	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865
3L	12466711	3L_12466711_SNP [dm3] 3L_12473611_SNP [dm6]	C	T	4.001e^-4	0.843	SYNONYMOUS_CODING CG10616 DOWNSTREAM CG10663
3R	21972408	3R_21972408_INS [dm3] 3R_26146686_INS [dm6]	G	GG	4.013e^-4	0.843	INTERGENIC
3R	3611343	3R_3611343_SNP [dm3] 3R_7785621_SNP [dm6]	A	T	4.016e^-4	0.843	DOWNSTREAM CG18748 INTRON CG18745
2L	1392586	2L_1392586_SNP [dm3] 2L_1392586_SNP [dm6]	T	G	4.025e^-4	0.843	INTRON lea	TF binding site mE1_TFBS_sens
X	3375554	X_3375554_SNP [dm3] X_3481521_SNP [dm6]	T	C	4.026e^-4	0.843	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	18152803	3L_18152803_SNP [dm3] 3L_18159703_SNP [dm6]	T	A	4.027e^-4	0.843	INTRON CG13699	TF binding site mE1_TFBS_HSA
3R	18665426	3R_18665426_SNP [dm3] 3R_22839704_SNP [dm6]	T	G	4.031e^-4	0.843	INTERGENIC
2R	16476993	2R_16476993_SNP [dm3] 2R_20589488_SNP [dm6]	C	T	4.034e^-4	0.843	INTRON bl	TF binding site BDTNP1_TFBS_dl
X	9970490	X_9970490_SNP [dm3] X_10076457_SNP [dm6]	A	G	4.044e^-4	0.844	DOWNSTREAM ZAP3 INTRON ZAP3
3R	26529688	3R_26529688_SNP [dm3] 3R_30703966_SNP [dm6]	T	C	4.045e^-4	0.844	DOWNSTREAM CG31010 INTERGENIC
2R	12011681	2R_12011681_SNP [dm3] 2R_16124176_SNP [dm6]	C	T	4.059e^-4	0.844	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	10166838	2L_10166838_SNP [dm3] 2L_10166838_SNP [dm6]	A	C	4.061e^-4	0.844	INTRON CG44153
2L	14369477	2L_14369477_SNP [dm3] 2L_14369477_SNP [dm6]	G	A	4.066e^-4	0.844	INTERGENIC
3L	10672522	3L_10672522_SNP [dm3] 3L_10679422_SNP [dm6]	G	A	4.068e^-4	0.844	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5478382	2L_5478382_SNP [dm3] 2L_5478382_SNP [dm6]	G	A	4.070e^-4	0.844	INTERGENIC
3R	21819009	3R_21819009_SNP [dm3] 3R_25993287_SNP [dm6]	G	A	4.071e^-4	0.844	INTRON Nf1
3R	20273683	3R_20273683_SNP [dm3] 3R_24447961_SNP [dm6]	C	T	4.082e^-4	0.845	INTRON nAChRalpha1
3R	12691603	3R_12691603_SNP [dm3] 3R_16865881_SNP [dm6]	T	G	4.094e^-4	0.846	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8361898	3L_8361898_SNP [dm3] 3L_8368798_SNP [dm6]	G	T	4.096e^-4	0.846	INTERGENIC
3R	17774091	3R_17774091_SNP [dm3] 3R_21948369_SNP [dm6]	G	A	4.101e^-4	0.846	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
2R	20019443	2R_20019443_SNP [dm3] 2R_24131920_SNP [dm6]	C	T	4.108e^-4	0.847	UPSTREAM tamo INTRON tamo
3L	2632208	3L_2632208_SNP [dm3] 3L_2632208_SNP [dm6]	T	C	4.119e^-4	0.847	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	14899481	2R_14899481_SNP [dm3] 2R_19011976_SNP [dm6]	G	T	4.121e^-4	0.847	INTERGENIC
X	8677729	X_8677729_SNP [dm3] X_8783696_SNP [dm6]	T	A	4.121e^-4	0.847	INTRON Lim1
2R	20026331	2R_20026331_SNP [dm3] 2R_24138808_SNP [dm6]	A	G	4.134e^-4	0.848	UPSTREAM CG4065 & 1 other EXON CR44826	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	2900509	2R_2900509_SNP [dm3] 2R_7013004_SNP [dm6]	G	A	4.135e^-4	0.848	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13791478	2R_13791478_SNP [dm3] 2R_17903973_SNP [dm6]	G	A	4.142e^-4	0.848	INTRON Elk
3L	6015399	3L_6015399_SNP [dm3] 3L_6022299_SNP [dm6]	T	A	4.153e^-4	0.848	INTRON PVRAP
2L	10096041	2L_10096041_SNP [dm3] 2L_10096041_SNP [dm6]	C	T	4.153e^-4	0.848	INTRON CG44153 & 1 other
3R	26688428	3R_26688428_SNP [dm3] 3R_30862706_SNP [dm6]	G	C	4.160e^-4	0.849	INTERGENIC
3L	14563623	3L_14563623_SNP [dm3] 3L_14570523_SNP [dm6]	A	T	4.163e^-4	0.849	INTERGENIC
3R	14739577	3R_14739577_SNP [dm3] 3R_18913855_SNP [dm6]	A	G	4.173e^-4	0.849	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22129899	3R_22129899_SNP [dm3] 3R_26304177_SNP [dm6]	C	A	4.174e^-4	0.849	INTERGENIC
3R	22943530	3R_22943530_SNP [dm3] 3R_27117808_SNP [dm6]	C	G	4.182e^-4	0.85	UPSTREAM CG5882 INTRON CG5880	TF binding site mE1_TFBS_cad
2R	7491896	2R_7491896_SNP [dm3] 2R_11604391_SNP [dm6]	G	A	4.191e^-4	0.85	INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12455629	3L_12455629_SNP [dm3] 3L_12462529_SNP [dm6]	C	G	4.193e^-4	0.85	DOWNSTREAM eyg INTERGENIC
2R	18910911	2R_18910911_SNP [dm3] 2R_23023388_SNP [dm6]	A	G	4.201e^-4	0.85	INTRON twi & 1 other
3R	10974468	3R_10974468_SNP [dm3] 3R_15148746_SNP [dm6]	G	C	4.219e^-4	0.85	INTERGENIC
2R	16240342	2R_16240342_SNP [dm3] 2R_20352837_SNP [dm6]	A	G	4.221e^-4	0.85	INTERGENIC
3L	4399472	3L_4399472_SNP [dm3] 3L_4399472_SNP [dm6]	G	A	4.222e^-4	0.85	INTRON slow	TF binding site mE1_TFBS_cad
2R	8835142	2R_8835142_SNP [dm3] 2R_12947637_SNP [dm6]	A	C	4.225e^-4	0.85	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9390413	2L_9390413_SNP [dm3] 2L_9390413_SNP [dm6]	G	A	4.237e^-4	0.85	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
2L	10547684	2L_10547684_SNP [dm3] 2L_10547684_SNP [dm6]	G	A	4.246e^-4	0.85	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14194502	X_14194502_SNP [dm3] X_14300469_SNP [dm6]	C	T	4.247e^-4	0.85	INTERGENIC
3R	17802072	3R_17802072_SNP [dm3] 3R_21976350_SNP [dm6]	T	G	4.258e^-4	0.85	INTRON Eip93F
2R	5699584	2R_5699584_SNP [dm3] 2R_9812079_SNP [dm6]	G	T	4.269e^-4	0.85	INTRON CG1648
X	12744149	X_12744149_DEL [dm3] X_12850116_DEL [dm6]	TATATAAAATTGGCG...	A	4.271e^-4	0.85	INTRON Pde9
3R	10952253	3R_10952253_SNP [dm3] 3R_15126531_SNP [dm6]	G	A	4.273e^-4	0.85	INTRON CG42788
X	17130157	X_17130157_SNP [dm3] X_17236124_SNP [dm6]	A	G	4.284e^-4	0.85	INTRON f
3L	5022205	3L_5022205_SNP [dm3] 3L_5022205_SNP [dm6]	G	A	4.289e^-4	0.85	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8686060	2L_8686060_SNP [dm3] 2L_8686060_SNP [dm6]	G	A	4.290e^-4	0.85	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20369018	3R_20369018_SNP [dm3] 3R_24543296_SNP [dm6]	A	G	4.291e^-4	0.85	INTRON CG5789
3R	24364663	3R_24364663_SNP [dm3] 3R_28538941_SNP [dm6]	C	T	4.298e^-4	0.85	INTRON Ppn
2L	15388416	2L_15388416_SNP [dm3] 2L_15388416_SNP [dm6]	C	A	4.300e^-4	0.85	INTERGENIC
2L	16373541	2L_16373541_SNP [dm3] 2L_16373541_SNP [dm6]	A	G	4.303e^-4	0.85	INTERGENIC
3R	26034172	3R_26034172_SNP [dm3] 3R_30208450_SNP [dm6]	T	A	4.305e^-4	0.85	UPSTREAM snoRNA:Psi18S-1377c & 3 others INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	13552046	3R_13552046_SNP [dm3] 3R_17726324_SNP [dm6]	A	G	4.308e^-4	0.85	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	14630693	2R_14630693_SNP [dm3] 2R_18743188_SNP [dm6]	T	C	4.315e^-4	0.85	SYNONYMOUS_CODING CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A	TF binding site mE1_TFBS_HSA
3L	4127895	3L_4127895_SNP [dm3] 3L_4127895_SNP [dm6]	C	A	4.316e^-4	0.85	INTRON ens
3R	4199403	3R_4199403_SNP [dm3] 3R_8373681_SNP [dm6]	G	A	4.322e^-4	0.85	INTRON CG45263
2L	18205024	2L_18205024_SNP [dm3] 2L_18205024_SNP [dm6]	C	T	4.323e^-4	0.85	INTRON CG42750	TF binding site mE1_TFBS_cad
3R	22954222	3R_22954222_SNP [dm3] 3R_27128500_SNP [dm6]	G	T	4.323e^-4	0.85	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18564571	3L_18564571_SNP [dm3] 3L_18571471_SNP [dm6]	T	G	4.328e^-4	0.85	INTRON AstC-R1
2R	5428487	2R_5428487_DEL [dm3] 2R_9540982_DEL [dm6]	TTT	T	4.329e^-4	0.85	UTR_3_PRIME brp DOWNSTREAM brp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1319223	3L_1319223_SNP [dm3] 3L_1319223_SNP [dm6]	A	C	4.330e^-4	0.85	DOWNSTREAM CG9153 INTRON Myo61F
3L	4029406	3L_4029406_SNP [dm3] 3L_4029406_SNP [dm6]	G	A	4.332e^-4	0.85	UPSTREAM Gr64c DOWNSTREAM Gr64a INTRON Gr64b & 1 other
3R	21806353	3R_21806353_SNP [dm3] 3R_25980631_SNP [dm6]	G	C	4.334e^-4	0.85	SYNONYMOUS_CODING CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4763328	3L_4763328_DEL [dm3] 3L_4763328_DEL [dm6]	AA	A	4.350e^-4	0.85	INTRON RhoGEF64C
3R	10584268	3R_10584268_SNP [dm3] 3R_14758546_SNP [dm6]	T	C	4.355e^-4	0.85	INTRON jvl
3R	22925559	3R_22925559_SNP [dm3] 3R_27099837_SNP [dm6]	A	C	4.356e^-4	0.85	UPSTREAM eater INTERGENIC	regulatory region REDfly_CRMs
2L	8683906	2L_8683906_SNP [dm3] 2L_8683906_SNP [dm6]	C	G	4.358e^-4	0.85	UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other INTRON CG9289
2L	8790596	2L_8790596_SNP [dm3] 2L_8790596_SNP [dm6]	A	C	4.365e^-4	0.85	INTERGENIC
X	18826056	X_18826056_DEL [dm3] X_18932023_DEL [dm6]	TTAGTCCCCGGAGAAGCT...	T	4.366e^-4	0.85	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	21976857	2L_21976857_SNP [dm3] 2L_21976857_SNP [dm6]	C	T	4.374e^-4	0.85	INTERGENIC
2R	6825155	2R_6825155_SNP [dm3] 2R_10937650_SNP [dm6]	A	C	4.374e^-4	0.85	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26876555	3R_26876555_SNP [dm3] 3R_31050833_SNP [dm6]	T	C	4.377e^-4	0.85	SYNONYMOUS_CODING Aph-4 DOWNSTREAM mir-4948	TF binding site mE1_TFBS_cad
3L	17887788	3L_17887788_SNP [dm3] 3L_17894688_SNP [dm6]	G	C	4.382e^-4	0.85	INTRON Tsp74F
3R	4279569	3R_4279569_SNP [dm3] 3R_8453847_SNP [dm6]	A	G	4.382e^-4	0.85	INTRON CG45263
3L	14564003	3L_14564003_INS [dm3] 3L_14570903_INS [dm6]	A	AATAAAA	4.392e^-4	0.85	INTERGENIC
3R	16170005	3R_16170005_SNP [dm3] 3R_20344283_SNP [dm6]	T	A	4.393e^-4	0.85	DOWNSTREAM Ir92a INTERGENIC
2L	5871223	2L_5871223_SNP [dm3] 2L_5871223_SNP [dm6]	G	T	4.401e^-4	0.85	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	14069827	2R_14069827_SNP [dm3] 2R_18182322_SNP [dm6]	G	A	4.401e^-4	0.85	SYNONYMOUS_CODING nopo DOWNSTREAM CG5721
X	12941357	X_12941357_SNP [dm3] X_13047324_SNP [dm6]	C	A	4.415e^-4	0.85	INTRON rad
3R	26956994	3R_26956994_SNP [dm3] 3R_31131272_SNP [dm6]	A	T	4.416e^-4	0.85	UPSTREAM CG15556 INTERGENIC
X	20751759	X_20751759_SNP [dm3] X_20880732_SNP [dm6]	A	T	4.417e^-4	0.85	INTRON shakB
3L	12585597	3L_12585597_SNP [dm3] 3L_12592497_SNP [dm6]	G	T	4.419e^-4	0.85	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26636810	3R_26636810_SNP [dm3] 3R_30811088_SNP [dm6]	C	T	4.423e^-4	0.85	INTRON cindr
2L	14559549	2L_14559549_SNP [dm3] 2L_14559549_SNP [dm6]	A	T	4.430e^-4	0.85	UPSTREAM CR44854 INTERGENIC
3R	22520370	3R_22520370_SNP [dm3] 3R_26694648_SNP [dm6]	T	A	4.442e^-4	0.851	INTERGENIC
X	20815799	X_20815799_SNP [dm3] X_20944772_SNP [dm6]	A	G	4.449e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21752167	3R_21752167_SNP [dm3] 3R_25926445_SNP [dm6]	A	G	4.461e^-4	0.851	INTRON CCAP-R
X	18978328	X_18978328_DEL [dm3] X_19084295_DEL [dm6]	TC	T	4.466e^-4	0.851	DOWNSTREAM CR45503 INTERGENIC
3R	16250600	3R_16250600_SNP [dm3] 3R_20424878_SNP [dm6]	G	A	4.471e^-4	0.851	INTRON Gfrl
3R	16250614	3R_16250614_SNP [dm3] 3R_20424892_SNP [dm6]	G	A	4.471e^-4	0.851	INTRON Gfrl
2L	16506996	2L_16506996_SNP [dm3] 2L_16506996_SNP [dm6]	A	T	4.473e^-4	0.851	SYNONYMOUS_CODING Tpr2	TF binding site mE1_TFBS_cad
3R	10141031	3R_10141031_DEL [dm3] 3R_14315309_DEL [dm6]	TATTTT	T	4.474e^-4	0.851	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	19825314	2L_19825314_SNP [dm3] 2L_19825314_SNP [dm6]	G	A	4.476e^-4	0.851	INTRON sick
2R	15948382	2R_15948382_SNP [dm3] 2R_20060877_SNP [dm6]	C	T	4.487e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24720243	3R_24720243_SNP [dm3] 3R_28894521_SNP [dm6]	A	G	4.505e^-4	0.851	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
X	7633952	X_7633952_SNP [dm3] X_7739919_SNP [dm6]	C	A	4.507e^-4	0.851	UTR_3_PRIME Tom40 DOWNSTREAM Tom40
3L	2614760	3L_2614760_SNP [dm3] 3L_2614760_SNP [dm6]	T	C	4.517e^-4	0.851	INTRON Pxn
2L	7385250	2L_7385250_SNP [dm3] 2L_7385250_SNP [dm6]	T	A	4.522e^-4	0.851	DOWNSTREAM ninaC INTRON CG5149
3R	16826621	3R_16826621_SNP [dm3] 3R_21000899_SNP [dm6]	A	G	4.522e^-4	0.851	INTRON Calx
3R	9938046	3R_9938046_SNP [dm3] 3R_14112324_SNP [dm6]	G	A	4.523e^-4	0.851	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
3R	22463627	3R_22463627_SNP [dm3] 3R_26637905_SNP [dm6]	T	G	4.530e^-4	0.851	DOWNSTREAM TwdlS INTERGENIC
2R	14060476	2R_14060476_SNP [dm3] 2R_18172971_SNP [dm6]	T	C	4.531e^-4	0.851	UPSTREAM CR45315 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10955504	3R_10955504_SNP [dm3] 3R_15129782_SNP [dm6]	G	A	4.544e^-4	0.851	DOWNSTREAM mir-2493 INTRON CG42788
3R	3576271	3R_3576271_SNP [dm3] 3R_7750549_SNP [dm6]	C	G	4.545e^-4	0.851	UPSTREAM pyd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14858778	2R_14858778_SNP [dm3] 2R_18971273_SNP [dm6]	A	C	4.548e^-4	0.851	UPSTREAM prod DOWNSTREAM CG15107 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
2L	21998984	2L_21998984_SNP [dm3] 2L_21998984_SNP [dm6]	A	G	4.555e^-4	0.851	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2R	13710442	2R_13710442_SNP [dm3] 2R_17822937_SNP [dm6]	T	C	4.576e^-4	0.851	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi transposable element FlyBase

By genomic position
Variant impact
Gene name

mn_PhototaxisScor_4w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results