DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.839e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.07909

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.2334	0.073

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2176 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	10218389	3R_10218389_SNP [dm3] 3R_14392667_SNP [dm6]	C	A	2.459e^-7	0.461	UTR_3_PRIME cv-c
2L	5756748	2L_5756748_SNP [dm3] 2L_5756748_SNP [dm6]	C	T	7.566e^-7	0.558	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25777300	3R_25777300_SNP [dm3] 3R_29951578_SNP [dm6]	C	A	1.011e^-6	0.558	SYNONYMOUS_CODING TkR99D	TF binding site mE1_TFBS_chinmo
2R	5258553	2R_5258553_SNP [dm3] 2R_9371048_SNP [dm6]	A	G	1.566e^-6	0.558	INTRON CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18025084	3R_18025084_SNP [dm3] 3R_22199362_SNP [dm6]	T	A	2.385e^-6	0.558	INTRON SKIP & 1 other
3R	24631769	3R_24631769_SNP [dm3] 3R_28806047_SNP [dm6]	G	C	2.553e^-6	0.558	UPSTREAM CheB98a INTERGENIC
3R	24631928	3R_24631928_SNP [dm3] 3R_28806206_SNP [dm6]	G	A	2.914e^-6	0.558	UPSTREAM CheB98a INTERGENIC
3R	24632268	3R_24632268_SNP [dm3] 3R_28806546_SNP [dm6]	G	A	3.179e^-6	0.558	UPSTREAM CheB98a INTERGENIC
2R	4950824	2R_4950824_SNP [dm3] 2R_9063319_SNP [dm6]	A	C	3.253e^-6	0.558	INTRON ana	regulatory region REDfly_CRMs
3R	20773614	3R_20773614_SNP [dm3] 3R_24947892_SNP [dm6]	G	C	4.264e^-6	0.558	SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	41954	2L_41954_SNP [dm3] 2L_41954_SNP [dm6]	C	T	4.534e^-6	0.558	INTRON Cda5
2R	4957336	2R_4957336_SNP [dm3] 2R_9069831_SNP [dm6]	T	C	4.543e^-6	0.558	INTRON ana	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	59531	2L_59531_SNP [dm3] 2L_59531_SNP [dm6]	A	G	4.622e^-6	0.558	UPSTREAM Cda5 INTRON Cda5
3R	25776843	3R_25776843_SNP [dm3] 3R_29951121_SNP [dm6]	A	C	4.653e^-6	0.558	UTR_3_PRIME TkR99D
X	15503961	X_15503961_SNP [dm3] X_15609928_SNP [dm6]	G	A	5.113e^-6	0.558	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26474565	3R_26474565_SNP [dm3] 3R_30648843_SNP [dm6]	T	C	5.525e^-6	0.558	UPSTREAM CG34432 & 1 other INTERGENIC
2L	5317	2L_5317_SNP [dm3] 2L_5317_SNP [dm6]	G	A	5.541e^-6	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5071947	3L_5071947_SNP [dm3] 3L_5071947_SNP [dm6]	T	A	6.111e^-6	0.558	INTRON Con
3L	17582034	3L_17582034_SNP [dm3] 3L_17588934_SNP [dm6]	G	A	6.574e^-6	0.558	INTRON Eip74EF
3L	4667266	3L_4667266_SNP [dm3] 3L_4667266_SNP [dm6]	G	A	6.741e^-6	0.558	UTR_5_PRIME CG32236 INTRON axo
3R	25771709	3R_25771709_SNP [dm3] 3R_29945987_SNP [dm6]	A	G	7.039e^-6	0.558	SYNONYMOUS_CODING CG15523
2L	18205141	2L_18205141_DEL [dm3] 2L_18205141_DEL [dm6]	AAGTTA	A	7.351e^-6	0.558	INTRON CG42750	TF binding site mE1_TFBS_cad
3L	4667256	3L_4667256_SNP [dm3] 3L_4667256_SNP [dm6]	C	G	7.494e^-6	0.558	UTR_5_PRIME CG32236 INTRON axo
2L	9982199	2L_9982199_SNP [dm3] 2L_9982199_SNP [dm6]	G	A	7.558e^-6	0.558	INTERGENIC
3R	17541782	3R_17541782_SNP [dm3] 3R_21716060_SNP [dm6]	G	T	7.765e^-6	0.558	INTRON CG31176
3R	25777371	3R_25777371_SNP [dm3] 3R_29951649_SNP [dm6]	A	G	7.899e^-6	0.558	SYNONYMOUS_CODING TkR99D	TF binding site mE1_TFBS_chinmo
3L	17582035	3L_17582035_SNP [dm3] 3L_17588935_SNP [dm6]	T	C	8.286e^-6	0.558	INTRON Eip74EF
3L	3835002	3L_3835002_SNP [dm3] 3L_3835002_SNP [dm6]	C	T	8.326e^-6	0.558	INTRON enc
2L	5756769	2L_5756769_SNP [dm3] 2L_5756769_SNP [dm6]	C	T	8.906e^-6	0.576	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26474764	3R_26474764_SNP [dm3] 3R_30649042_SNP [dm6]	A	C	9.725e^-6	0.591	UPSTREAM CG34432 & 2 others INTERGENIC
2L	18204987	2L_18204987_SNP [dm3] 2L_18204987_SNP [dm6]	A	G	9.911e^-6	0.591	INTRON CG42750	TF binding site mE1_TFBS_cad
3R	19235179	3R_19235179_SNP [dm3] 3R_23409457_SNP [dm6]	C	A	1.139e^-5	0.591	UTR_3_PRIME CG4374
2R	19362754	2R_19362754_SNP [dm3] 2R_23475231_SNP [dm6]	A	T	1.176e^-5	0.591	DOWNSTREAM CG13557 INTRON CG43795
3R	24631778	3R_24631778_SNP [dm3] 3R_28806056_SNP [dm6]	G	T	1.180e^-5	0.591	UPSTREAM CheB98a INTERGENIC
X	6265547	X_6265547_SNP [dm3] X_6371514_SNP [dm6]	G	C	1.184e^-5	0.591	UTR_3_PRIME PpV UPSTREAM CR44816 DOWNSTREAM Marf
3R	25770171	3R_25770171_SNP [dm3] 3R_29944449_SNP [dm6]	C	T	1.188e^-5	0.591	SYNONYMOUS_CODING CG15523
2R	4949324	2R_4949324_SNP [dm3] 2R_9061819_SNP [dm6]	T	A	1.190e^-5	0.591	NON_SYNONYMOUS_CODING CG8197 UPSTREAM ana	TF binding site mE1_TFBS_cad
2L	3826485	2L_3826485_SNP [dm3] 2L_3826485_SNP [dm6]	G	C	1.208e^-5	0.591	SYNONYMOUS_CODING slp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13369925	2R_13369925_SNP [dm3] 2R_17482420_SNP [dm6]	C	T	1.229e^-5	0.591	NON_SYNONYMOUS_CODING CG43110 DOWNSTREAM veil
2L	9982187	2L_9982187_SNP [dm3] 2L_9982187_SNP [dm6]	T	C	1.322e^-5	0.62	INTERGENIC
3L	4395518	3L_4395518_DEL [dm3] 3L_4395518_DEL [dm6]	CCAAAAGTCTGGC...	T	1.460e^-5	0.622	INTRON slow
2L	5756590	2L_5756590_SNP [dm3] 2L_5756590_SNP [dm6]	A	G	1.469e^-5	0.622	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20325768	X_20325768_SNP [dm3] X_20454741_SNP [dm6]	C	T	1.491e^-5	0.622	INTRON CG32506	TF binding site mE1_TFBS_chinmo
2L	12260876	2L_12260876_DEL [dm3] 2L_12260876_DEL [dm6]	GCGCCA	G	1.538e^-5	0.622	INTRON aret
3R	25767661	3R_25767661_SNP [dm3] 3R_29941939_SNP [dm6]	T	A	1.596e^-5	0.622	NON_SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_HSA
3L	10171220	3L_10171220_INS [dm3] 3L_10178120_INS [dm6]	A	ATGGA	1.601e^-5	0.622	INTRON dpr10
3R	4444345	3R_4444345_SNP [dm3] 3R_8618623_SNP [dm6]	G	A	1.611e^-5	0.622	INTRON 5-HT2B
3R	17634036	3R_17634036_INS [dm3] 3R_21808314_INS [dm6]	T	TT	1.639e^-5	0.622	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8060484	2L_8060484_SNP [dm3] 2L_8060484_SNP [dm6]	A	G	1.653e^-5	0.622	SYNONYMOUS_CODING poe
X	5405019	X_5405019_SNP [dm3] X_5510986_SNP [dm6]	A	T	1.658e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10137744	3L_10137744_SNP [dm3] 3L_10144644_SNP [dm6]	C	G	1.722e^-5	0.633	INTERGENIC
3L	16562562	3L_16562562_SNP [dm3] 3L_16569462_SNP [dm6]	T	C	1.818e^-5	0.65	INTRON Mipp1	TF binding site mE1_TFBS_sens
3R	20774757	3R_20774757_SNP [dm3] 3R_24949035_SNP [dm6]	C	T	1.837e^-5	0.65	INTRON CG13646
X	15207808	X_15207808_SNP [dm3] X_15313775_SNP [dm6]	G	A	1.945e^-5	0.66	INTRON gce
3R	25771070	3R_25771070_SNP [dm3] 3R_29945348_SNP [dm6]	A	G	1.995e^-5	0.66	INTRON CG15523
3R	25771727	3R_25771727_SNP [dm3] 3R_29946005_SNP [dm6]	C	T	2.121e^-5	0.66	SYNONYMOUS_CODING CG15523
3R	25771589	3R_25771589_SNP [dm3] 3R_29945867_SNP [dm6]	T	C	2.125e^-5	0.66	INTRON CG15523
3R	17142415	3R_17142415_SNP [dm3] 3R_21316693_SNP [dm6]	C	A	2.135e^-5	0.66	UPSTREAM mir-4951 EXON Hsromega
X	6265543	X_6265543_SNP [dm3] X_6371510_SNP [dm6]	C	T	2.148e^-5	0.66	UTR_3_PRIME PpV UPSTREAM CR44816 DOWNSTREAM Marf
3L	14378849	3L_14378849_SNP [dm3] 3L_14385749_SNP [dm6]	G	A	2.176e^-5	0.66	INTERGENIC
3R	21349057	3R_21349057_SNP [dm3] 3R_25523335_SNP [dm6]	C	T	2.193e^-5	0.66	INTRON msi
3L	14326890	3L_14326890_SNP [dm3] 3L_14333790_SNP [dm6]	G	T	2.204e^-5	0.66	INTRON fz	TF binding site BDTNP1_TFBS_twi
3L	16552068	3L_16552068_SNP [dm3] 3L_16558968_SNP [dm6]	A	T	2.219e^-5	0.66	INTERGENIC
3L	8236819	3L_8236819_SNP [dm3] 3L_8243719_SNP [dm6]	G	C	2.339e^-5	0.686	INTRON Dscam4
2L	8060541	2L_8060541_SNP [dm3] 2L_8060541_SNP [dm6]	T	A	2.412e^-5	0.689	INTRON poe
3L	10137587	3L_10137587_SNP [dm3] 3L_10144487_SNP [dm6]	A	T	2.443e^-5	0.689	INTERGENIC
2R	19362506	2R_19362506_SNP [dm3] 2R_23474983_SNP [dm6]	C	T	2.480e^-5	0.689	DOWNSTREAM CG13557 INTRON CG43795
3L	8146681	3L_8146681_SNP [dm3] 3L_8153581_SNP [dm6]	C	T	2.515e^-5	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10629949	2L_10629949_SNP [dm3] 2L_10629949_SNP [dm6]	T	C	2.538e^-5	0.689	SYNONYMOUS_CODING CG7329
2L	18132765	2L_18132765_SNP [dm3] 2L_18132765_SNP [dm6]	T	C	2.602e^-5	0.689	INTRON kel
2R	19600037	2R_19600037_SNP [dm3] 2R_23712514_SNP [dm6]	T	A	2.625e^-5	0.689	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	17233401	2L_17233401_SNP [dm3] 2L_17233401_SNP [dm6]	T	C	2.644e^-5	0.689	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	8101030	2L_8101030_DEL [dm3] 2L_8101030_DEL [dm6]	TAAA	CCC	3.022e^-5	0.744	INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21349020	3R_21349020_SNP [dm3] 3R_25523298_SNP [dm6]	G	A	3.033e^-5	0.744	INTRON msi
3R	24178094	3R_24178094_SNP [dm3] 3R_28352372_SNP [dm6]	G	C	3.038e^-5	0.744	NON_SYNONYMOUS_CODING Or98b
2R	17983988	2R_17983988_SNP [dm3] 2R_22096483_SNP [dm6]	G	C	3.061e^-5	0.744	INTRON CG11073
2L	26696	2L_26696_SNP [dm3] 2L_26696_SNP [dm6]	A	G	3.100e^-5	0.744	INTRON Cda5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10224862	3R_10224862_SNP [dm3] 3R_14399140_SNP [dm6]	G	T	3.141e^-5	0.744	INTRON cv-c
2L	5756270	2L_5756270_SNP [dm3] 2L_5756270_SNP [dm6]	T	G	3.165e^-5	0.744	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2L	12260853	2L_12260853_SNP [dm3] 2L_12260853_SNP [dm6]	A	T	3.172e^-5	0.744	INTRON aret
X	17073523	X_17073523_SNP [dm3] X_17179490_SNP [dm6]	A	T	3.304e^-5	0.751	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18198517	3L_18198517_SNP [dm3] 3L_18205417_SNP [dm6]	T	C	3.328e^-5	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14191675	2R_14191675_SNP [dm3] 2R_18304170_SNP [dm6]	A	T	3.379e^-5	0.751	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13959795	3L_13959795_SNP [dm3] 3L_13966695_SNP [dm6]	G	A	3.451e^-5	0.751	UTR_5_PRIME Nxf3 INTRON ssp2
2L	12260866	2L_12260866_SNP [dm3] 2L_12260866_SNP [dm6]	T	A	3.535e^-5	0.751	INTRON aret
2L	639330	2L_639330_SNP [dm3] 2L_639330_SNP [dm6]	A	T	3.583e^-5	0.751	DOWNSTREAM ds INTERGENIC
2L	62766	2L_62766_SNP [dm3] 2L_62766_SNP [dm6]	A	C	3.655e^-5	0.751	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17238383	3R_17238383_SNP [dm3] 3R_21412661_SNP [dm6]	T	C	3.666e^-5	0.751	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	709026	2R_709026_SNP [dm3] 2R_4821521_SNP [dm6]	C	A	3.737e^-5	0.751	INTRON CG17528
3L	14710486	3L_14710486_SNP [dm3] 3L_14717386_SNP [dm6]	T	C	3.741e^-5	0.751	INTRON ome	regulatory region REDfly_CRMs
3R	17142397	3R_17142397_SNP [dm3] 3R_21316675_SNP [dm6]	T	A	3.775e^-5	0.751	UPSTREAM mir-4951 EXON Hsromega
3R	26474235	3R_26474235_SNP [dm3] 3R_30648513_SNP [dm6]	G	A	3.794e^-5	0.751	UTR_5_PRIME PH4alphaPV UPSTREAM CG34432
2R	20937983	2R_20937983_SNP [dm3] 2R_25050460_SNP [dm6]	G	T	3.813e^-5	0.751	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6054673	3L_6054673_SNP [dm3] 3L_6061573_SNP [dm6]	A	G	3.828e^-5	0.751	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
2L	20083100	2L_20083100_SNP [dm3] 2L_20083100_SNP [dm6]	C	T	3.856e^-5	0.751	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7707982	2R_7707982_SNP [dm3] 2R_11820477_SNP [dm6]	A	T	3.892e^-5	0.751	INTERGENIC
3L	18198523	3L_18198523_SNP [dm3] 3L_18205423_SNP [dm6]	T	C	3.917e^-5	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8060376	2L_8060376_SNP [dm3] 2L_8060376_SNP [dm6]	G	A	3.922e^-5	0.751	SYNONYMOUS_CODING poe
3L	7247553	3L_7247553_SNP [dm3] 3L_7254453_SNP [dm6]	C	T	3.988e^-5	0.756	INTRON CG14830
3R	26334678	3R_26334678_SNP [dm3] 3R_30508956_SNP [dm6]	A	G	4.052e^-5	0.76	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539 & 1 other	TF binding site mE1_TFBS_inv
3L	4989872	3L_4989872_SNP [dm3] 3L_4989872_SNP [dm6]	C	T	4.115e^-5	0.764	INTRON Con
3R	10234798	3R_10234798_SNP [dm3] 3R_14409076_SNP [dm6]	C	T	4.323e^-5	0.766	SYNONYMOUS_CODING cv-c
3R	20844201	3R_20844201_SNP [dm3] 3R_25018479_SNP [dm6]	G	A	4.404e^-5	0.766	NON_SYNONYMOUS_CODING tnc
3R	20844311	3R_20844311_SNP [dm3] 3R_25018589_SNP [dm6]	C	T	4.418e^-5	0.766	SYNONYMOUS_CODING tnc
3L	6584284	3L_6584284_SNP [dm3] 3L_6591184_SNP [dm6]	C	G	4.443e^-5	0.766	INTRON CG18769
3L	16799585	3L_16799585_SNP [dm3] 3L_16806485_SNP [dm6]	G	A	4.499e^-5	0.766	INTRON CG9674 & 1 other	TF binding site mE1_TFBS_Trl
3R	20775607	3R_20775607_SNP [dm3] 3R_24949885_SNP [dm6]	C	T	4.586e^-5	0.766	DOWNSTREAM CG13646 INTERGENIC
X	12416335	X_12416335_SNP [dm3] X_12522302_SNP [dm6]	T	C	4.619e^-5	0.766	SYNONYMOUS_CODING CG43921 UTR_5_PRIME CG43921
3R	10228682	3R_10228682_SNP [dm3] 3R_14402960_SNP [dm6]	A	G	4.623e^-5	0.766	INTRON cv-c
2L	8058055	2L_8058055_SNP [dm3] 2L_8058055_SNP [dm6]	T	C	4.645e^-5	0.766	SYNONYMOUS_CODING poe
2R	18146527	2R_18146527_SNP [dm3] 2R_22259022_SNP [dm6]	G	A	4.660e^-5	0.766	INTRON dve
3R	25038052	3R_25038052_SNP [dm3] 3R_29212330_SNP [dm6]	T	C	4.728e^-5	0.766	INTERGENIC
2R	710094	2R_710094_SNP [dm3] 2R_4822589_SNP [dm6]	C	T	4.745e^-5	0.766	INTRON CG17528	transposable element FlyBase
2L	5632710	2L_5632710_SNP [dm3] 2L_5632710_SNP [dm6]	G	C	4.759e^-5	0.766	UPSTREAM CR44822 INTRON CG31646
3R	10223342	3R_10223342_SNP [dm3] 3R_14397620_SNP [dm6]	A	T	4.766e^-5	0.766	INTRON cv-c
2R	955258	2R_955258_SNP [dm3] 2R_5067753_SNP [dm6]	T	C	4.769e^-5	0.766	INTRON TpnC41C
3L	11181422	3L_11181422_SNP [dm3] 3L_11188322_SNP [dm6]	T	C	4.881e^-5	0.766	INTRON GlcAT-P	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4215077	2R_4215077_SNP [dm3] 2R_8327572_SNP [dm6]	G	T	4.903e^-5	0.766	UTR_5_PRIME pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1321284	X_1321284_SNP [dm3] X_1427251_SNP [dm6]	G	T	5.018e^-5	0.766	INTRON futsch
3L	5071891	3L_5071891_SNP [dm3] 3L_5071891_SNP [dm6]	C	A	5.171e^-5	0.766	INTRON Con
2L	14034978	2L_14034978_SNP [dm3] 2L_14034978_SNP [dm6]	C	T	5.190e^-5	0.766	EXON CR45284
3R	21915814	3R_21915814_SNP [dm3] 3R_26090092_SNP [dm6]	T	A	5.193e^-5	0.766	INTRON dys	regulatory region REDfly_CRMs
2L	12260870	2L_12260870_SNP [dm3] 2L_12260870_SNP [dm6]	T	G	5.206e^-5	0.766	INTRON aret
2L	5756276	2L_5756276_SNP [dm3] 2L_5756276_SNP [dm6]	T	A	5.266e^-5	0.766	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2R	970408	2R_970408_SNP [dm3] 2R_5082903_SNP [dm6]	T	C	5.346e^-5	0.766	UPSTREAM CR43360 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9380867	2R_9380867_SNP [dm3] 2R_13493362_SNP [dm6]	A	G	5.372e^-5	0.766	INTRON bbc	TF binding site mE1_TFBS_HSA
2L	6531250	2L_6531250_SNP [dm3] 2L_6531250_SNP [dm6]	C	T	5.383e^-5	0.766	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14585598	2R_14585598_SNP [dm3] 2R_18698093_SNP [dm6]	C	T	5.503e^-5	0.766	DOWNSTREAM CG15071 INTRON Sik3
3L	3942278	3L_3942278_SNP [dm3] 3L_3942278_SNP [dm6]	T	A	5.504e^-5	0.766	SPLICE_SITE_REGION CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916 INTRON CG10863
3R	14682673	3R_14682673_SNP [dm3] 3R_18856951_SNP [dm6]	C	T	5.567e^-5	0.766	INTERGENIC
X	16027933	X_16027933_SNP [dm3] X_16133900_SNP [dm6]	G	C	5.610e^-5	0.766	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_sbb
2R	4950089	2R_4950089_SNP [dm3] 2R_9062584_SNP [dm6]	C	G	5.630e^-5	0.766	UPSTREAM CG8197 INTRON ana	regulatory region REDfly_CRMs
2R	15332906	2R_15332906_SNP [dm3] 2R_19445401_SNP [dm6]	A	G	5.684e^-5	0.766	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8942573	2R_8942573_SNP [dm3] 2R_13055068_SNP [dm6]	T	G	5.692e^-5	0.766	DOWNSTREAM Drl-2 INTERGENIC
3L	6584270	3L_6584270_SNP [dm3] 3L_6591170_SNP [dm6]	T	C	5.808e^-5	0.766	INTRON CG18769
3L	18198334	3L_18198334_SNP [dm3] 3L_18205234_SNP [dm6]	A	C	5.811e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17980538	2R_17980538_SNP [dm3] 2R_22093033_SNP [dm6]	G	A	5.866e^-5	0.766	SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14378844	3L_14378844_SNP [dm3] 3L_14385744_SNP [dm6]	T	A	5.892e^-5	0.766	INTERGENIC
2L	15945835	2L_15945835_SNP [dm3] 2L_15945835_SNP [dm6]	T	A	5.920e^-5	0.766	INTRON beat-Ib
3L	12405823	3L_12405823_SNP [dm3] 3L_12412723_SNP [dm6]	C	T	5.950e^-5	0.766	INTRON CG32103
3L	10183524	3L_10183524_SNP [dm3] 3L_10190424_SNP [dm6]	C	T	5.957e^-5	0.766	UTR_3_PRIME ect	TF binding site BDTNP1_TFBS_dl
3R	20775177	3R_20775177_SNP [dm3] 3R_24949455_SNP [dm6]	G	C	5.989e^-5	0.766	SYNONYMOUS_CODING CG13646
3L	3835010	3L_3835010_SNP [dm3] 3L_3835010_SNP [dm6]	A	G	5.996e^-5	0.766	INTRON enc
3R	18269935	3R_18269935_SNP [dm3] 3R_22444213_SNP [dm6]	T	A	5.999e^-5	0.766	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_sens
3R	20845421	3R_20845421_SNP [dm3] 3R_25019699_SNP [dm6]	A	C	6.005e^-5	0.766	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
2L	20395278	2L_20395278_SNP [dm3] 2L_20395278_SNP [dm6]	G	A	6.035e^-5	0.766	INTRON CG10947
2R	17613781	2R_17613781_SNP [dm3] 2R_21726276_SNP [dm6]	G	A	6.052e^-5	0.766	INTERGENIC
2L	16736847	2L_16736847_SNP [dm3] 2L_16736847_SNP [dm6]	C	T	6.074e^-5	0.766	NON_SYNONYMOUS_CODING glu
2L	18341745	2L_18341745_SNP [dm3] 2L_18341745_SNP [dm6]	G	A	6.088e^-5	0.766	INTRON Fas3
3R	16750391	3R_16750391_SNP [dm3] 3R_20924669_SNP [dm6]	C	G	6.156e^-5	0.77	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2R	4952153	2R_4952153_SNP [dm3] 2R_9064648_SNP [dm6]	T	A	6.201e^-5	0.77	INTRON ana	regulatory region REDfly_CRMs
2R	15258203	2R_15258203_SNP [dm3] 2R_19370698_SNP [dm6]	C	T	6.315e^-5	0.771	INTRON CG9416	TF binding site BDTNP1_TFBS_twi
2R	19416849	2R_19416849_SNP [dm3] 2R_23529326_SNP [dm6]	T	A	6.321e^-5	0.771	INTRON bw
2R	10308879	2R_10308879_SNP [dm3] 2R_14421374_SNP [dm6]	C	T	6.332e^-5	0.771	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo
3R	26124913	3R_26124913_SNP [dm3] 3R_30299191_SNP [dm6]	C	G	6.530e^-5	0.781	INTRON hdc
2R	19376000	2R_19376000_SNP [dm3] 2R_23488477_SNP [dm6]	A	T	6.557e^-5	0.781	INTRON CG43795
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	6.569e^-5	0.781	INTRON ds
3L	11181424	3L_11181424_SNP [dm3] 3L_11188324_SNP [dm6]	G	A	6.629e^-5	0.781	INTRON GlcAT-P	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10101968	3L_10101968_SNP [dm3] 3L_10108868_SNP [dm6]	T	C	6.657e^-5	0.781	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
2R	12460821	2R_12460821_SNP [dm3] 2R_16573316_SNP [dm6]	A	G	6.701e^-5	0.781	SYNONYMOUS_CODING CG4927
2R	1747381	2R_1747381_SNP [dm3] 2R_5859876_SNP [dm6]	A	T	6.706e^-5	0.781	UTR_3_PRIME dpr12
3L	15906217	3L_15906217_SNP [dm3] 3L_15913117_SNP [dm6]	T	A	6.790e^-5	0.782	INTRON sff
2R	811040	2R_811040_SNP [dm3] 2R_4923535_SNP [dm6]	T	A	6.808e^-5	0.782	INTRON Ir41a	transposable element FlyBase
X	1568456	X_1568456_SNP [dm3] X_1674423_SNP [dm6]	A	C	6.922e^-5	0.782	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3R	11296895	3R_11296895_SNP [dm3] 3R_15471173_SNP [dm6]	G	A	6.937e^-5	0.782	INTRON AdamTS-A
2R	15333405	2R_15333405_SNP [dm3] 2R_19445900_SNP [dm6]	G	A	6.973e^-5	0.782	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20738593	2L_20738593_SNP [dm3] 2L_20738593_SNP [dm6]	T	A	7.016e^-5	0.782	SYNONYMOUS_CODING Fs_2_Ket
3R	20885427	3R_20885427_SNP [dm3] 3R_25059705_SNP [dm6]	A	T	7.019e^-5	0.782	INTRON Unc-13-4B
2L	10643551	2L_10643551_SNP [dm3] 2L_10643551_SNP [dm6]	G	T	7.086e^-5	0.782	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3R	2032486	3R_2032486_SNP [dm3] 3R_6206764_SNP [dm6]	A	T	7.179e^-5	0.782	INTRON Osi24
3R	25773299	3R_25773299_SNP [dm3] 3R_29947577_SNP [dm6]	T	C	7.259e^-5	0.782	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13947052	3L_13947052_SNP [dm3] 3L_13953952_SNP [dm6]	A	T	7.308e^-5	0.782	INTRON CG32137
3L	4099309	3L_4099309_DEL [dm3] 3L_4099309_DEL [dm6]	GCAGACTTCTAT...	G	7.470e^-5	0.782	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	19792355	2R_19792355_SNP [dm3] 2R_23904832_SNP [dm6]	T	C	7.497e^-5	0.782	SYNONYMOUS_CODING CG13562 DOWNSTREAM Nap1
2R	12142632	2R_12142632_SNP [dm3] 2R_16255127_SNP [dm6]	A	T	7.521e^-5	0.782	INTRON CngA
3R	16750351	3R_16750351_SNP [dm3] 3R_20924629_SNP [dm6]	G	A	7.523e^-5	0.782	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2R	7203838	2R_7203838_SNP [dm3] 2R_11316333_SNP [dm6]	A	G	7.580e^-5	0.782	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
2R	7327930	2R_7327930_SNP [dm3] 2R_11440425_SNP [dm6]	T	A	7.635e^-5	0.782	INTRON CG7777
2L	20371739	2L_20371739_SNP [dm3] 2L_20371739_SNP [dm6]	G	T	7.642e^-5	0.782	DOWNSTREAM Ugt37a1 INTERGENIC
3L	9193031	3L_9193031_SNP [dm3] 3L_9199931_SNP [dm6]	C	T	7.647e^-5	0.782	INTERGENIC
2R	17936444	2R_17936444_SNP [dm3] 2R_22048939_SNP [dm6]	C	A	7.657e^-5	0.782	INTERGENIC
2R	4928219	2R_4928219_SNP [dm3] 2R_9040714_SNP [dm6]	C	T	7.701e^-5	0.782	SYNONYMOUS_CODING Ance-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25771046	3R_25771046_SNP [dm3] 3R_29945324_SNP [dm6]	G	A	7.871e^-5	0.782	INTRON CG15523
3R	17634113	3R_17634113_SNP [dm3] 3R_21808391_SNP [dm6]	C	A	7.883e^-5	0.782	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4192496	3R_4192496_SNP [dm3] 3R_8366774_SNP [dm6]	A	C	7.980e^-5	0.782	UTR_3_PRIME CG45263 INTRON CG45263
3L	4566156	3L_4566156_SNP [dm3] 3L_4566156_SNP [dm6]	T	C	8.010e^-5	0.782	INTRON CG42540
3R	13291027	3R_13291027_SNP [dm3] 3R_17465305_SNP [dm6]	C	A	8.065e^-5	0.782	INTERGENIC
2L	12260801	2L_12260801_DEL [dm3] 2L_12260801_DEL [dm6]	ACTTTCCA	A	8.094e^-5	0.782	INTRON aret
X	15516454	X_15516454_DEL [dm3] X_15622421_DEL [dm6]	TT	T	8.118e^-5	0.782	INTRON sog	TF binding site BDTNP1_TFBS_dl
2R	17936453	2R_17936453_SNP [dm3] 2R_22048948_SNP [dm6]	T	C	8.121e^-5	0.782	INTERGENIC
3L	4101446	3L_4101446_SNP [dm3] 3L_4101446_SNP [dm6]	A	C	8.199e^-5	0.782	UPSTREAM CG14995 INTRON CG14995	TF binding site BDTNP1_TFBS_dl
2R	5254397	2R_5254397_SNP [dm3] 2R_9366892_SNP [dm6]	C	T	8.317e^-5	0.782	INTRON CG13954
2L	3975550	2L_3975550_SNP [dm3] 2L_3975550_SNP [dm6]	G	A	8.413e^-5	0.782	INTRON fred
3L	6054486	3L_6054486_SNP [dm3] 3L_6061386_SNP [dm6]	A	G	8.445e^-5	0.782	UTR_3_PRIME CG10472 DOWNSTREAM CG6592
2R	12629003	2R_12629003_SNP [dm3] 2R_16741498_SNP [dm6]	C	T	8.504e^-5	0.782	INTERGENIC
2R	16757305	2R_16757305_SNP [dm3] 2R_20869800_SNP [dm6]	C	G	8.508e^-5	0.782	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21349212	3R_21349212_SNP [dm3] 3R_25523490_SNP [dm6]	A	G	8.512e^-5	0.782	INTRON msi
2R	19600049	2R_19600049_SNP [dm3] 2R_23712526_SNP [dm6]	T	A	8.534e^-5	0.782	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	25772060	3R_25772060_SNP [dm3] 3R_29946338_SNP [dm6]	G	A	8.578e^-5	0.782	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3R	10903641	3R_10903641_SNP [dm3] 3R_15077919_SNP [dm6]	G	C	8.634e^-5	0.782	UPSTREAM dpr9 DOWNSTREAM CG6974 INTERGENIC
3R	21313050	3R_21313050_SNP [dm3] 3R_25487328_SNP [dm6]	C	T	8.639e^-5	0.782	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11975260	2L_11975260_INS [dm3] 2L_11975260_INS [dm6]	A	AA	8.648e^-5	0.782	INTERGENIC
2R	15338124	2R_15338124_SNP [dm3] 2R_19450619_SNP [dm6]	G	C	8.684e^-5	0.782	INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10223632	3R_10223632_SNP [dm3] 3R_14397910_SNP [dm6]	A	T	8.724e^-5	0.782	INTRON cv-c
2R	8942247	2R_8942247_SNP [dm3] 2R_13054742_SNP [dm6]	C	G	8.757e^-5	0.782	DOWNSTREAM Drl-2 INTERGENIC
3R	13870343	3R_13870343_SNP [dm3] 3R_18044621_SNP [dm6]	G	A	8.859e^-5	0.782	DOWNSTREAM htl INTERGENIC
X	8442916	X_8442916_SNP [dm3] X_8548883_SNP [dm6]	A	T	8.920e^-5	0.782	INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3R	18024956	3R_18024956_SNP [dm3] 3R_22199234_SNP [dm6]	C	T	8.999e^-5	0.782	INTRON SKIP & 1 other
2L	20083117	2L_20083117_SNP [dm3] 2L_20083117_SNP [dm6]	A	G	9.030e^-5	0.782	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20866180	2L_20866180_INS [dm3] 2L_20866180_INS [dm6]	A	AA	9.041e^-5	0.782	INTRON CG9338	TF binding site mE1_TFBS_HSA
3L	7020481	3L_7020481_SNP [dm3] 3L_7027381_SNP [dm6]	A	G	9.058e^-5	0.782	UPSTREAM CG17744 INTRON Mp
2R	8555014	2R_8555014_SNP [dm3] 2R_12667509_SNP [dm6]	A	T	9.078e^-5	0.782	INTRON nemy
2L	8061554	2L_8061554_SNP [dm3] 2L_8061554_SNP [dm6]	A	T	9.112e^-5	0.782	INTRON poe	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16340674	2R_16340674_SNP [dm3] 2R_20453169_SNP [dm6]	A	G	9.123e^-5	0.782	INTRON CG12484
2L	8153543	2L_8153543_SNP [dm3] 2L_8153543_SNP [dm6]	G	T	9.204e^-5	0.782	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25751540	3R_25751540_SNP [dm3] 3R_29925818_SNP [dm6]	G	T	9.243e^-5	0.782	NON_SYNONYMOUS_CODING Jon99Ci
2R	8942271	2R_8942271_SNP [dm3] 2R_13054766_SNP [dm6]	T	C	9.311e^-5	0.782	DOWNSTREAM Drl-2 INTERGENIC
2L	10643562	2L_10643562_SNP [dm3] 2L_10643562_SNP [dm6]	A	G	9.422e^-5	0.782	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3L	8866154	3L_8866154_DEL [dm3] 3L_8873054_DEL [dm6]	AA	A	9.423e^-5	0.782	INTRON dally	TF binding site mE1_TFBS_cad
3R	10225588	3R_10225588_SNP [dm3] 3R_14399866_SNP [dm6]	A	T	9.457e^-5	0.782	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11576972	3L_11576972_SNP [dm3] 3L_11583872_SNP [dm6]	G	T	9.536e^-5	0.782	SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
3L	3918801	3L_3918801_DEL [dm3] 3L_3918801_DEL [dm6]	AC	A	9.537e^-5	0.782	INTRON Eip63F-1
3L	11576960	3L_11576960_SNP [dm3] 3L_11583860_SNP [dm6]	G	T	9.599e^-5	0.782	SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
3L	8256538	3L_8256538_SNP [dm3] 3L_8263438_SNP [dm6]	A	G	9.611e^-5	0.782	INTRON Dscam4
2L	18342789	2L_18342789_SNP [dm3] 2L_18342789_SNP [dm6]	A	G	9.679e^-5	0.782	INTRON Fas3
3L	18823444	3L_18823444_SNP [dm3] 3L_18830344_SNP [dm6]	A	G	9.704e^-5	0.782	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24946937	3R_24946937_SNP [dm3] 3R_29121215_SNP [dm6]	C	T	9.771e^-5	0.782	SYNONYMOUS_CODING yem	TF binding site mE1_TFBS_chinmo
3L	3915658	3L_3915658_INS [dm3] 3L_3915658_INS [dm6]	T	TGGAAAACGTTT...	9.789e^-5	0.782	INTRON Eip63F-1
2L	8067020	2L_8067020_SNP [dm3] 2L_8067020_SNP [dm6]	C	T	9.861e^-5	0.782	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2R	4946091	2R_4946091_SNP [dm3] 2R_9058586_SNP [dm6]	T	A	9.921e^-5	0.782	INTRON CG13743
2L	29257	2L_29257_SNP [dm3] 2L_29257_SNP [dm6]	C	T	9.963e^-5	0.782	INTRON Cda5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18521019	2R_18521019_SNP [dm3] 2R_22633514_SNP [dm6]	G	A	9.979e^-5	0.782	UTR_3_PRIME CG33143 DOWNSTREAM CG17807
3R	17214286	3R_17214286_SNP [dm3] 3R_21388564_SNP [dm6]	A	G	1.004e^-4	0.782	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	12054506	2L_12054506_SNP [dm3] 2L_12054506_SNP [dm6]	G	A	1.004e^-4	0.782	SPLICE_SITE_REGION JhI-21 INTRON JhI-21
3R	26754605	3R_26754605_SNP [dm3] 3R_30928883_SNP [dm6]	G	T	1.004e^-4	0.782	INTRON Ptx1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	3178662	2L_3178662_SNP [dm3] 2L_3178662_SNP [dm6]	C	A	1.020e^-4	0.782	INTRON CG34393
3R	26469089	3R_26469089_SNP [dm3] 3R_30643367_SNP [dm6]	T	C	1.027e^-4	0.782	DOWNSTREAM CG31013 INTERGENIC
2L	8153765	2L_8153765_SNP [dm3] 2L_8153765_SNP [dm6]	C	T	1.028e^-4	0.782	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13831672	3R_13831672_SNP [dm3] 3R_18005950_SNP [dm6]	G	A	1.033e^-4	0.782	INTRON cpo
X	17074141	X_17074141_DEL [dm3] X_17180108_DEL [dm6]	TGAAAATGT	T	1.048e^-4	0.782	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4099244	3L_4099244_SNP [dm3] 3L_4099244_SNP [dm6]	C	A	1.052e^-4	0.782	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	14274726	2R_14274726_SNP [dm3] 2R_18387221_SNP [dm6]	A	T	1.055e^-4	0.782	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
2L	8153793	2L_8153793_SNP [dm3] 2L_8153793_SNP [dm6]	T	C	1.057e^-4	0.782	INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13330825	X_13330825_SNP [dm3] X_13436792_SNP [dm6]	G	A	1.057e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8256595	3L_8256595_SNP [dm3] 3L_8263495_SNP [dm6]	C	T	1.060e^-4	0.782	INTRON Dscam4
3L	10910473	3L_10910473_SNP [dm3] 3L_10917373_SNP [dm6]	A	T	1.063e^-4	0.782	INTERGENIC
3R	25761459	3R_25761459_SNP [dm3] 3R_29935737_SNP [dm6]	A	G	1.065e^-4	0.782	SPLICE_SITE_REGION eIF2B-alpha UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8153675	2L_8153675_SNP [dm3] 2L_8153675_SNP [dm6]	C	A	1.068e^-4	0.782	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17237969	3R_17237969_SNP [dm3] 3R_21412247_SNP [dm6]	T	G	1.069e^-4	0.782	INTRON lbl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10539280	3L_10539280_DEL [dm3] 3L_10546180_DEL [dm6]	AA	A	1.070e^-4	0.782	INTRON A2bp1
3R	23370231	3R_23370231_SNP [dm3] 3R_27544509_SNP [dm6]	C	G	1.072e^-4	0.782	NON_SYNONYMOUS_CODING Gr98c DOWNSTREAM Gr98b
3R	26420396	3R_26420396_SNP [dm3] 3R_30594674_SNP [dm6]	G	A	1.080e^-4	0.782	INTRON CG2246
2R	2050775	2R_2050775_SNP [dm3] 2R_6163270_SNP [dm6]	C	A	1.080e^-4	0.782	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	transposable element FlyBase
2R	19600053	2R_19600053_SNP [dm3] 2R_23712530_SNP [dm6]	T	G	1.099e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	6019309	2R_6019309_SNP [dm3] 2R_10131804_SNP [dm6]	G	T	1.114e^-4	0.782	SYNONYMOUS_CODING gem	TF binding site mE1_TFBS_cad
3R	17634129	3R_17634129_SNP [dm3] 3R_21808407_SNP [dm6]	T	C	1.117e^-4	0.782	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4910533	3L_4910533_SNP [dm3] 3L_4910533_SNP [dm6]	C	T	1.120e^-4	0.782	UTR_5_PRIME Rh50
X	1389603	X_1389603_SNP [dm3] X_1495570_SNP [dm6]	C	T	1.121e^-4	0.782	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11139668	2R_11139668_SNP [dm3] 2R_15252163_SNP [dm6]	G	C	1.125e^-4	0.782	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25230282	3R_25230282_SNP [dm3] 3R_29404560_SNP [dm6]	C	G	1.128e^-4	0.782	INTRON Ptp99A
3R	11600598	3R_11600598_SNP [dm3] 3R_15774876_SNP [dm6]	A	T	1.131e^-4	0.782	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207
3R	11601376	3R_11601376_SNP [dm3] 3R_15775654_SNP [dm6]	C	T	1.131e^-4	0.782	UPSTREAM CR45206 & 1 other INTRON CG4525
2R	923311	2R_923311_SNP [dm3] 2R_5035806_SNP [dm6]	G	A	1.133e^-4	0.782	INTERGENIC	transposable element FlyBase
3L	7247554	3L_7247554_SNP [dm3] 3L_7254454_SNP [dm6]	A	G	1.134e^-4	0.782	INTRON CG14830
2R	7327939	2R_7327939_SNP [dm3] 2R_11440434_SNP [dm6]	T	A	1.145e^-4	0.782	INTRON CG7777
3R	25777796	3R_25777796_SNP [dm3] 3R_29952074_SNP [dm6]	T	A	1.145e^-4	0.782	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13666968	2L_13666968_SNP [dm3] 2L_13666968_SNP [dm6]	A	G	1.150e^-4	0.782	INTRON CG18507	TF binding site mE1_TFBS_Trl
3R	26334616	3R_26334616_SNP [dm3] 3R_30508894_SNP [dm6]	G	A	1.152e^-4	0.782	SPLICE_SITE_REGION CG34041 DOWNSTREAM CG15539 & 1 other INTRON CG34041	TF binding site mE1_TFBS_inv
3R	20844165	3R_20844165_SNP [dm3] 3R_25018443_SNP [dm6]	G	A	1.162e^-4	0.782	NON_SYNONYMOUS_CODING tnc
2R	9050361	2R_9050361_SNP [dm3] 2R_13162856_SNP [dm6]	T	C	1.163e^-4	0.782	UTR_3_PRIME Nrk DOWNSTREAM CG15870
3L	6584274	3L_6584274_SNP [dm3] 3L_6591174_SNP [dm6]	A	G	1.164e^-4	0.782	INTRON CG18769
3R	20593915	3R_20593915_SNP [dm3] 3R_24768193_SNP [dm6]	A	G	1.170e^-4	0.782	EXON CR45650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13895303	3R_13895303_SNP [dm3] 3R_18069581_SNP [dm6]	G	A	1.172e^-4	0.782	INTERGENIC
3R	10230476	3R_10230476_SNP [dm3] 3R_14404754_SNP [dm6]	G	T	1.182e^-4	0.782	INTRON cv-c	TF binding site mE1_TFBS_inv
2L	16735893	2L_16735893_SNP [dm3] 2L_16735893_SNP [dm6]	G	A	1.187e^-4	0.782	SYNONYMOUS_CODING glu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1092936	3L_1092936_SNP [dm3] 3L_1092936_SNP [dm6]	G	A	1.193e^-4	0.782	INTRON bab1	regulatory region REDfly_CRMs
2L	8577761	2L_8577761_SNP [dm3] 2L_8577761_SNP [dm6]	T	C	1.194e^-4	0.782	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12405650	3L_12405650_SNP [dm3] 3L_12412550_SNP [dm6]	A	C	1.194e^-4	0.782	INTRON CG32103
3L	4405353	3L_4405353_SNP [dm3] 3L_4405353_SNP [dm6]	C	T	1.195e^-4	0.782	UTR_3_PRIME CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	6313341	2R_6313341_SNP [dm3] 2R_10425836_SNP [dm6]	C	T	1.195e^-4	0.782	DOWNSTREAM Prx2540-1 INTERGENIC
3R	11601399	3R_11601399_INS [dm3] 3R_15775677_INS [dm6]	A	ACATGTATATGCAGTTCGGC...	1.199e^-4	0.782	UPSTREAM CR45206 & 1 other INTRON CG4525
3R	17214349	3R_17214349_SNP [dm3] 3R_21388627_SNP [dm6]	T	A	1.205e^-4	0.782	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	16874640	3R_16874640_SNP [dm3] 3R_21048918_SNP [dm6]	G	C	1.209e^-4	0.782	UPSTREAM CG7079 INTERGENIC
2R	4959637	2R_4959637_SNP [dm3] 2R_9072132_SNP [dm6]	G	A	1.210e^-4	0.782	INTRON ana	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26465888	3R_26465888_SNP [dm3] 3R_30640166_SNP [dm6]	T	G	1.212e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9591034	2R_9591034_SNP [dm3] 2R_13703529_SNP [dm6]	C	T	1.218e^-4	0.782	INTRON fas
X	14336932	X_14336932_SNP [dm3] X_14442899_SNP [dm6]	T	G	1.224e^-4	0.782	INTRON dpr8
X	14915895	X_14915895_SNP [dm3] X_15021862_SNP [dm6]	A	C	1.224e^-4	0.782	INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8577719	2L_8577719_SNP [dm3] 2L_8577719_SNP [dm6]	A	G	1.227e^-4	0.782	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	12206505	2R_12206505_SNP [dm3] 2R_16319000_SNP [dm6]	T	C	1.228e^-4	0.782	SYNONYMOUS_CODING CG8060
3R	24411175	3R_24411175_SNP [dm3] 3R_28585453_SNP [dm6]	C	T	1.228e^-4	0.782	UPSTREAM MRE23 & 1 other INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26420374	3R_26420374_SNP [dm3] 3R_30594652_SNP [dm6]	T	C	1.245e^-4	0.782	INTRON CG2246
3R	26616790	3R_26616790_SNP [dm3] 3R_30791068_SNP [dm6]	G	A	1.263e^-4	0.782	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
3L	7020459	3L_7020459_SNP [dm3] 3L_7027359_SNP [dm6]	A	G	1.267e^-4	0.782	UPSTREAM CG17744 INTRON Mp
2R	17581808	2R_17581808_SNP [dm3] 2R_21694303_SNP [dm6]	C	G	1.271e^-4	0.782	NON_SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3R	24929225	3R_24929225_SNP [dm3] 3R_29103503_SNP [dm6]	G	A	1.271e^-4	0.782	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15769307	3R_15769307_SNP [dm3] 3R_19943585_SNP [dm6]	T	C	1.273e^-4	0.782	INTRON Hs6st
2L	9657541	2L_9657541_SNP [dm3] 2L_9657541_SNP [dm6]	T	A	1.276e^-4	0.782	DOWNSTREAM CG33299 INTERGENIC
3L	14304900	3L_14304900_SNP [dm3] 3L_14311800_SNP [dm6]	A	T	1.278e^-4	0.782	INTRON fz
2L	18919917	2L_18919917_SNP [dm3] 2L_18919917_SNP [dm6]	A	G	1.280e^-4	0.782	SPLICE_SITE_REGION ssp3 INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	5781477	3R_5781477_SNP [dm3] 3R_9955755_SNP [dm6]	T	C	1.281e^-4	0.782	UTR_3_PRIME Glut4EF INTRON Glut4EF
3L	14313761	3L_14313761_SNP [dm3] 3L_14320661_SNP [dm6]	G	A	1.289e^-4	0.782	INTRON fz
3R	23427436	3R_23427436_SNP [dm3] 3R_27601714_SNP [dm6]	A	G	1.295e^-4	0.782	NON_SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1787771	2R_1787771_SNP [dm3] 2R_5900266_SNP [dm6]	T	C	1.298e^-4	0.782	INTRON CG43366	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	10025923	2R_10025923_SNP [dm3] 2R_14138418_SNP [dm6]	G	A	1.301e^-4	0.782	INTRON Prosap
3L	7462133	3L_7462133_INS [dm3] 3L_7469033_INS [dm6]	A	AG	1.302e^-4	0.782	DOWNSTREAM CG8543 & 3 others INTERGENIC
3L	6589210	3L_6589210_SNP [dm3] 3L_6596110_SNP [dm6]	C	T	1.303e^-4	0.782	SYNONYMOUS_CODING ndl
X	2347866	X_2347866_SNP [dm3] X_2453833_SNP [dm6]	T	G	1.303e^-4	0.782	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	767016	2R_767016_SNP [dm3] 2R_4879511_SNP [dm6]	C	A	1.310e^-4	0.782	INTERGENIC
3L	8568335	3L_8568335_SNP [dm3] 3L_8575235_SNP [dm6]	G	A	1.311e^-4	0.782	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20373877	2L_20373877_SNP [dm3] 2L_20373877_SNP [dm6]	G	C	1.315e^-4	0.782	NON_SYNONYMOUS_CODING Ugt37a1
2L	9657605	2L_9657605_SNP [dm3] 2L_9657605_SNP [dm6]	A	T	1.315e^-4	0.782	DOWNSTREAM CG33299 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8119310	3L_8119310_SNP [dm3] 3L_8126210_SNP [dm6]	T	A	1.318e^-4	0.782	SYNONYMOUS_CODING Uba2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14183253	3R_14183253_INS [dm3] 3R_18357531_INS [dm6]	A	AA	1.319e^-4	0.782	INTRON CG15803
2L	5548151	2L_5548151_SNP [dm3] 2L_5548151_SNP [dm6]	C	T	1.321e^-4	0.782	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	14275155	2R_14275155_SNP [dm3] 2R_18387650_SNP [dm6]	A	G	1.327e^-4	0.782	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
3R	15075123	3R_15075123_SNP [dm3] 3R_19249401_SNP [dm6]	A	G	1.330e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10235005	3R_10235005_SNP [dm3] 3R_14409283_SNP [dm6]	G	C	1.331e^-4	0.782	SYNONYMOUS_CODING cv-c
2R	5187331	2R_5187331_SNP [dm3] 2R_9299826_SNP [dm6]	T	A	1.333e^-4	0.782	UTR_3_PRIME Drep-2 DOWNSTREAM Drep-2
X	6354514	X_6354514_INS [dm3] X_6460481_INS [dm6]	A	ACAGAA	1.334e^-4	0.782	INTRON CG42340
2L	14444630	2L_14444630_SNP [dm3] 2L_14444630_SNP [dm6]	G	T	1.341e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18537826	2R_18537826_SNP [dm3] 2R_22650321_SNP [dm6]	T	C	1.346e^-4	0.782	UPSTREAM nsr & 1 other INTERGENIC	transposable element FlyBase
2R	4959636	2R_4959636_SNP [dm3] 2R_9072131_SNP [dm6]	G	T	1.346e^-4	0.782	INTRON ana	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	1385094	X_1385094_SNP [dm3] X_1491061_SNP [dm6]	G	A	1.365e^-4	0.786	SYNONYMOUS_CODING Nmdar2 INTRON inc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10643561	2L_10643561_SNP [dm3] 2L_10643561_SNP [dm6]	A	T	1.372e^-4	0.786	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3L	11181294	3L_11181294_SNP [dm3] 3L_11188194_SNP [dm6]	C	T	1.381e^-4	0.786	INTRON GlcAT-P	TF binding site mE1_TFBS_inv
2R	4934965	2R_4934965_SNP [dm3] 2R_9047460_SNP [dm6]	G	A	1.383e^-4	0.786	INTRON CG13743
3L	4103056	3L_4103056_INS [dm3] 3L_4103056_INS [dm6]	T	TAT	1.386e^-4	0.786	UPSTREAM CG14995 & 1 other INTRON CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14437099	3R_14437099_DEL [dm3] 3R_18611377_DEL [dm6]	AA	A	1.388e^-4	0.786	INTRON qin & 1 other
3R	21915810	3R_21915810_SNP [dm3] 3R_26090088_SNP [dm6]	T	G	1.395e^-4	0.786	INTRON dys	regulatory region REDfly_CRMs
3L	3657078	3L_3657078_SNP [dm3] 3L_3657078_SNP [dm6]	T	C	1.407e^-4	0.786	INTERGENIC
3L	18274507	3L_18274507_SNP [dm3] 3L_18281407_SNP [dm6]	C	A	1.408e^-4	0.786	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8975006	3L_8975006_SNP [dm3] 3L_8981906_SNP [dm6]	G	A	1.411e^-4	0.786	UPSTREAM CG13314 DOWNSTREAM Galk INTRON CG13314
3L	4103076	3L_4103076_SNP [dm3] 3L_4103076_SNP [dm6]	G	T	1.417e^-4	0.786	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13455736	3R_13455736_SNP [dm3] 3R_17630014_SNP [dm6]	A	T	1.423e^-4	0.786	UPSTREAM tRNA:V4:90C & 1 other INTERGENIC
3R	26424237	3R_26424237_SNP [dm3] 3R_30598515_SNP [dm6]	T	G	1.438e^-4	0.786	SYNONYMOUS_CODING CG31019 INTRON CG2246	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	741688	2R_741688_SNP [dm3] 2R_4854183_SNP [dm6]	A	G	1.441e^-4	0.786	INTERGENIC
2R	4963788	2R_4963788_SNP [dm3] 2R_9076283_SNP [dm6]	A	T	1.445e^-4	0.786	INTRON ana
3R	3579493	3R_3579493_SNP [dm3] 3R_7753771_SNP [dm6]	T	C	1.446e^-4	0.786	INTERGENIC
3R	20844011	3R_20844011_SNP [dm3] 3R_25018289_SNP [dm6]	A	T	1.448e^-4	0.786	NON_SYNONYMOUS_CODING tnc
3R	18839629	3R_18839629_SNP [dm3] 3R_23013907_SNP [dm6]	T	A	1.448e^-4	0.786	INTRON CG6688	TF binding site mE1_TFBS_zfh1
2R	18534993	2R_18534993_INS [dm3] 2R_22647488_INS [dm6]	T	TGAATAATAATTGAATATTA...	1.459e^-4	0.786	UTR_3_PRIME CG34446 UPSTREAM CG30195 DOWNSTREAM CG34445
3L	4099245	3L_4099245_SNP [dm3] 3L_4099245_SNP [dm6]	A	T	1.461e^-4	0.786	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	85980	2L_85980_SNP [dm3] 2L_85980_SNP [dm6]	G	T	1.462e^-4	0.786	INTRON net	TF binding site mE1_TFBS_cad
3L	18199576	3L_18199576_SNP [dm3] 3L_18206476_SNP [dm6]	A	C	1.464e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15759274	3R_15759274_SNP [dm3] 3R_19933552_SNP [dm6]	T	C	1.466e^-4	0.786	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6584276	3L_6584276_SNP [dm3] 3L_6591176_SNP [dm6]	T	C	1.475e^-4	0.786	INTRON CG18769
3L	18159506	3L_18159506_INS [dm3] 3L_18166406_INS [dm6]	C	TT	1.478e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18626414	3L_18626414_SNP [dm3] 3L_18633314_SNP [dm6]	C	T	1.485e^-4	0.786	INTRON MYPT-75D
3R	25770266	3R_25770266_SNP [dm3] 3R_29944544_SNP [dm6]	G	T	1.490e^-4	0.786	INTRON CG15523
3L	3657121	3L_3657121_SNP [dm3] 3L_3657121_SNP [dm6]	G	T	1.499e^-4	0.786	INTERGENIC
3R	14183168	3R_14183168_SNP [dm3] 3R_18357446_SNP [dm6]	T	A	1.499e^-4	0.786	INTRON CG15803
3L	16241485	3L_16241485_SNP [dm3] 3L_16248385_SNP [dm6]	A	C	1.504e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	4393806	3L_4393806_SNP [dm3] 3L_4393806_SNP [dm6]	A	T	1.507e^-4	0.786	INTRON slow
3R	17238508	3R_17238508_SNP [dm3] 3R_21412786_SNP [dm6]	C	T	1.518e^-4	0.786	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4943501	2R_4943501_SNP [dm3] 2R_9055996_SNP [dm6]	T	G	1.521e^-4	0.786	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4943514	2R_4943514_SNP [dm3] 2R_9056009_SNP [dm6]	G	C	1.521e^-4	0.786	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23374738	3R_23374738_SNP [dm3] 3R_27549016_SNP [dm6]	A	T	1.522e^-4	0.786	INTRON Klp98A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26472445	3R_26472445_SNP [dm3] 3R_30646723_SNP [dm6]	G	A	1.526e^-4	0.786	SPLICE_SITE_REGION PH4alphaPV UPSTREAM CG31013 INTRON PH4alphaPV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9071442	2R_9071442_SNP [dm3] 2R_13183937_SNP [dm6]	G	C	1.529e^-4	0.786	INTRON CG17724 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	17971804	3R_17971804_SNP [dm3] 3R_22146082_SNP [dm6]	G	C	1.537e^-4	0.786	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12466995	2L_12466995_DEL [dm3] 2L_12466995_DEL [dm6]	ACTATGTACGTA...	A	1.545e^-4	0.786	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7033747	2R_7033747_INS [dm3] 2R_11146242_INS [dm6]	T	TC	1.549e^-4	0.786	UPSTREAM CG13231 INTRON CG13229
2R	7033748	2R_7033748_DEL [dm3] 2R_11146243_DEL [dm6]	TGAG	T	1.549e^-4	0.786	UPSTREAM CG13231 INTRON CG13229
3R	25771340	3R_25771340_SNP [dm3] 3R_29945618_SNP [dm6]	A	G	1.550e^-4	0.786	SYNONYMOUS_CODING CG15523
X	8971078	X_8971078_SNP [dm3] X_9077045_SNP [dm6]	T	A	1.556e^-4	0.786	INTRON CG44325	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12141282	2L_12141282_SNP [dm3] 2L_12141282_SNP [dm6]	T	G	1.558e^-4	0.786	DOWNSTREAM Gr33a INTERGENIC
2L	9805720	2L_9805720_SNP [dm3] 2L_9805720_SNP [dm6]	C	T	1.560e^-4	0.786	INTRON nAChRalpha6	TF binding site mE1_TFBS_sens
3L	6585364	3L_6585364_SNP [dm3] 3L_6592264_SNP [dm6]	C	A	1.561e^-4	0.786	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2R	812202	2R_812202_SNP [dm3] 2R_4924697_SNP [dm6]	C	G	1.562e^-4	0.786	INTRON Ir41a	transposable element FlyBase
3R	6552292	3R_6552292_SNP [dm3] 3R_10726570_SNP [dm6]	T	G	1.567e^-4	0.786	INTERGENIC
X	1408422	X_1408422_SNP [dm3] X_1514389_SNP [dm6]	A	T	1.572e^-4	0.786	INTRON inc	transposable element FlyBase
2R	15334493	2R_15334493_SNP [dm3] 2R_19446988_SNP [dm6]	T	A	1.578e^-4	0.786	UPSTREAM EloC DOWNSTREAM betaTub56D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13736208	2L_13736208_SNP [dm3] 2L_13736208_SNP [dm6]	A	T	1.590e^-4	0.786	NON_SYNONYMOUS_CODING CG31813	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12410072	2L_12410072_SNP [dm3] 2L_12410072_SNP [dm6]	A	G	1.595e^-4	0.786	INTRON vir-1
2L	8153651	2L_8153651_SNP [dm3] 2L_8153651_SNP [dm6]	A	T	1.603e^-4	0.786	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23375551	3R_23375551_SNP [dm3] 3R_27549829_SNP [dm6]	A	G	1.604e^-4	0.786	NON_SYNONYMOUS_CODING Klp98A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8942300	2R_8942300_SNP [dm3] 2R_13054795_SNP [dm6]	G	A	1.607e^-4	0.786	DOWNSTREAM Drl-2 INTERGENIC
3R	23421227	3R_23421227_SNP [dm3] 3R_27595505_SNP [dm6]	G	A	1.610e^-4	0.786	INTRON CG5639	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	889157	2R_889157_SNP [dm3] 2R_5001652_SNP [dm6]	A	G	1.610e^-4	0.786	INTRON Ir41a	transposable element FlyBase
3L	5071630	3L_5071630_SNP [dm3] 3L_5071630_SNP [dm6]	G	A	1.611e^-4	0.786	INTRON Con
2L	12407829	2L_12407829_SNP [dm3] 2L_12407829_SNP [dm6]	C	G	1.615e^-4	0.786	INTRON vir-1
X	1408420	X_1408420_SNP [dm3] X_1514387_SNP [dm6]	T	C	1.616e^-4	0.786	INTRON inc	transposable element FlyBase
2R	811780	2R_811780_SNP [dm3] 2R_4924275_SNP [dm6]	G	A	1.619e^-4	0.786	INTRON Ir41a
2R	20219487	2R_20219487_SNP [dm3] 2R_24331964_SNP [dm6]	T	A	1.619e^-4	0.786	UTR_3_PRIME slbo
3R	23370302	3R_23370302_SNP [dm3] 3R_27544580_SNP [dm6]	G	T	1.621e^-4	0.786	NON_SYNONYMOUS_CODING Gr98c DOWNSTREAM Gr98b
2L	19960886	2L_19960886_SNP [dm3] 2L_19960886_SNP [dm6]	C	T	1.623e^-4	0.786	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 2 others
3L	10623645	3L_10623645_SNP [dm3] 3L_10630545_SNP [dm6]	A	C	1.636e^-4	0.788	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
2L	6749793	2L_6749793_SNP [dm3] 2L_6749793_SNP [dm6]	T	C	1.637e^-4	0.788	INTRON CG11221
2R	4943508	2R_4943508_SNP [dm3] 2R_9056003_SNP [dm6]	A	T	1.639e^-4	0.788	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4917095	2R_4917095_SNP [dm3] 2R_9029590_SNP [dm6]	T	A	1.644e^-4	0.789	INTRON CG8170
3R	25777794	3R_25777794_SNP [dm3] 3R_29952072_SNP [dm6]	A	G	1.650e^-4	0.79	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2211681	3L_2211681_SNP [dm3] 3L_2211681_SNP [dm6]	A	G	1.666e^-4	0.792	SYNONYMOUS_CODING CG15878	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8033406	2L_8033406_SNP [dm3] 2L_8033406_SNP [dm6]	C	A	1.667e^-4	0.792	INTRON CG7367 & 1 other
2L	7766738	2L_7766738_SNP [dm3] 2L_7766738_SNP [dm6]	G	A	1.684e^-4	0.792	UPSTREAM CG7191 DOWNSTREAM CG7196 INTERGENIC
3L	8808294	3L_8808294_SNP [dm3] 3L_8815194_SNP [dm6]	T	C	1.685e^-4	0.792	INTERGENIC
3R	25780600	3R_25780600_SNP [dm3] 3R_29954878_SNP [dm6]	A	T	1.687e^-4	0.792	INTRON TkR99D
3L	8050733	3L_8050733_SNP [dm3] 3L_8057633_SNP [dm6]	A	G	1.699e^-4	0.792	INTRON bip1	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	10308858	2R_10308858_SNP [dm3] 2R_14421353_SNP [dm6]	A	G	1.704e^-4	0.792	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo
3R	17724725	3R_17724725_SNP [dm3] 3R_21899003_SNP [dm6]	A	T	1.710e^-4	0.792	INTRON CG6678
3R	13291218	3R_13291218_SNP [dm3] 3R_17465496_SNP [dm6]	C	G	1.711e^-4	0.792	INTERGENIC
2L	18353582	2L_18353582_SNP [dm3] 2L_18353582_SNP [dm6]	T	C	1.713e^-4	0.792	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26495405	3R_26495405_SNP [dm3] 3R_30669683_SNP [dm6]	T	C	1.715e^-4	0.792	INTERGENIC
2L	7681838	2L_7681838_SNP [dm3] 2L_7681838_SNP [dm6]	T	C	1.715e^-4	0.792	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4436026	X_4436026_SNP [dm3] X_4541993_SNP [dm6]	C	G	1.716e^-4	0.792	SYNONYMOUS_CODING CHOp24 UPSTREAM CG3568 INTRON CR32773	TF binding site mE1_TFBS_HSA
2R	774997	2R_774997_SNP [dm3] 2R_4887492_SNP [dm6]	A	G	1.720e^-4	0.792	INTERGENIC
3L	1816920	3L_1816920_SNP [dm3] 3L_1816920_SNP [dm6]	C	T	1.725e^-4	0.792	INTRON GV1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18406761	2R_18406761_SNP [dm3] 2R_22519256_SNP [dm6]	C	A	1.726e^-4	0.792	INTRON px
3R	13317700	3R_13317700_SNP [dm3] 3R_17491978_SNP [dm6]	A	T	1.735e^-4	0.792	INTRON Dscam3
3L	18201167	3L_18201167_SNP [dm3] 3L_18208067_SNP [dm6]	A	C	1.736e^-4	0.792	INTERGENIC
3L	10953645	3L_10953645_SNP [dm3] 3L_10960545_SNP [dm6]	A	C	1.742e^-4	0.792	UPSTREAM CR45249 DOWNSTREAM CR45248 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13836492	2R_13836492_SNP [dm3] 2R_17948987_SNP [dm6]	T	C	1.744e^-4	0.792	INTERGENIC
2L	12366912	2L_12366912_DEL [dm3] 2L_12366912_DEL [dm6]	CTTTTTAAAAT...	C	1.749e^-4	0.792	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17971794	3R_17971794_SNP [dm3] 3R_22146072_SNP [dm6]	T	A	1.763e^-4	0.792	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18354575	3R_18354575_SNP [dm3] 3R_22528853_SNP [dm6]	C	G	1.765e^-4	0.792	UPSTREAM CG5346 DOWNSTREAM CG33099 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18201108	3L_18201108_SNP [dm3] 3L_18208008_SNP [dm6]	T	G	1.771e^-4	0.792	INTERGENIC
2L	8061653	2L_8061653_SNP [dm3] 2L_8061653_SNP [dm6]	A	G	1.775e^-4	0.792	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5772708	2L_5772708_SNP [dm3] 2L_5772708_SNP [dm6]	T	A	1.778e^-4	0.792	UPSTREAM CG9171 INTRON CG9171
3R	13047655	3R_13047655_SNP [dm3] 3R_17221933_SNP [dm6]	C	T	1.780e^-4	0.792	INTRON CG31262	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19909783	3R_19909783_INS [dm3] 3R_24084061_INS [dm6]	A	AA	1.781e^-4	0.792	INTRON 4EHP
2R	14097691	2R_14097691_SNP [dm3] 2R_18210186_SNP [dm6]	A	T	1.782e^-4	0.792	EXON CR45147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13749742	2R_13749742_SNP [dm3] 2R_17862237_SNP [dm6]	G	A	1.784e^-4	0.792	SYNONYMOUS_CODING thr DOWNSTREAM CG14490	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8808266	3L_8808266_SNP [dm3] 3L_8815166_SNP [dm6]	T	C	1.786e^-4	0.792	INTERGENIC
X	2346259	X_2346259_SNP [dm3] X_2452226_SNP [dm6]	C	T	1.802e^-4	0.797	INTRON boi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17155324	2L_17155324_SNP [dm3] 2L_17155324_SNP [dm6]	G	A	1.813e^-4	0.799	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
3L	4387130	3L_4387130_SNP [dm3] 3L_4387130_SNP [dm6]	C	T	1.816e^-4	0.799	INTRON slow
2L	18237112	2L_18237112_DEL [dm3] 2L_18237112_DEL [dm6]	GTTAGATAACCG...	A	1.821e^-4	0.8	INTRON CG42750
2R	3159196	2R_3159196_SNP [dm3] 2R_7271691_SNP [dm6]	C	A	1.828e^-4	0.8	DOWNSTREAM Br140 INTERGENIC
2L	5756313	2L_5756313_SNP [dm3] 2L_5756313_SNP [dm6]	C	T	1.832e^-4	0.8	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2048529	2R_2048529_DEL [dm3] 2R_6161024_DEL [dm6]	TGGATACT	T	1.842e^-4	0.8	UPSTREAM tRNA:R2:42Ac DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	6639805	3L_6639805_SNP [dm3] 3L_6646705_SNP [dm6]	C	A	1.846e^-4	0.8	INTERGENIC
3L	7020471	3L_7020471_SNP [dm3] 3L_7027371_SNP [dm6]	A	G	1.855e^-4	0.8	UPSTREAM CG17744 INTRON Mp
2L	7679980	2L_7679980_SNP [dm3] 2L_7679980_SNP [dm6]	C	T	1.856e^-4	0.8	INTRON Myo28B1
X	1344700	X_1344700_SNP [dm3] X_1450667_SNP [dm6]	A	G	1.858e^-4	0.8	UTR_3_PRIME futsch
3L	6458476	3L_6458476_SNP [dm3] 3L_6465376_SNP [dm6]	C	T	1.859e^-4	0.8	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11400205	2R_11400205_SNP [dm3] 2R_15512700_SNP [dm6]	G	A	1.868e^-4	0.8	SYNONYMOUS_CODING GalNAc-T1 UPSTREAM GalNAc-T1
2R	1876702	2R_1876702_SNP [dm3] 2R_5989197_SNP [dm6]	G	A	1.868e^-4	0.8	INTRON Src42A
3L	1371654	3L_1371654_SNP [dm3] 3L_1371654_SNP [dm6]	C	T	1.870e^-4	0.8	INTRON Ptp61F & 1 other
3R	17238498	3R_17238498_SNP [dm3] 3R_21412776_SNP [dm6]	A	C	1.873e^-4	0.8	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15488465	2L_15488465_SNP [dm3] 2L_15488465_SNP [dm6]	T	A	1.899e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10255960	2L_10255960_INS [dm3] 2L_10255960_INS [dm6]	A	AACA	1.910e^-4	0.806	UPSTREAM CG5676 DOWNSTREAM Pten INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	8942266	2R_8942266_SNP [dm3] 2R_13054761_SNP [dm6]	A	T	1.910e^-4	0.806	DOWNSTREAM Drl-2 INTERGENIC
3R	19730032	3R_19730032_SNP [dm3] 3R_23904310_SNP [dm6]	C	T	1.910e^-4	0.806	INTRON sba
2L	12054509	2L_12054509_DEL [dm3] 2L_12054509_DEL [dm6]	TTAAAGTAGTC...	CA	1.917e^-4	0.806	INTRON JhI-21
3R	25216403	3R_25216403_SNP [dm3] 3R_29390681_SNP [dm6]	A	G	1.921e^-4	0.806	INTRON Ptp99A
3L	18274490	3L_18274490_SNP [dm3] 3L_18281390_SNP [dm6]	A	C	1.923e^-4	0.806	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	19808789	3R_19808789_SNP [dm3] 3R_23983067_SNP [dm6]	G	C	1.924e^-4	0.806	UTR_3_PRIME CG31140 UPSTREAM CR31451	TF binding site BDTNP1_TFBS_dl
2R	12206653	2R_12206653_SNP [dm3] 2R_16319148_SNP [dm6]	C	A	1.926e^-4	0.806	SPLICE_SITE_REGION CG8060 INTRON CG8060
X	148080	X_148080_SNP [dm3] X_254047_SNP [dm6]	C	T	1.944e^-4	0.812	UTR_3_PRIME G9a UPSTREAM CG42376 DOWNSTREAM G9a
2R	3163335	2R_3163335_SNP [dm3] 2R_7275830_SNP [dm6]	C	A	1.947e^-4	0.812	NON_SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10524745	2L_10524745_SNP [dm3] 2L_10524745_SNP [dm6]	T	C	1.954e^-4	0.813	INTERGENIC
X	18014073	X_18014073_SNP [dm3] X_18120040_SNP [dm6]	T	A	1.970e^-4	0.814	DOWNSTREAM CR45605 INTERGENIC
X	1382899	X_1382899_SNP [dm3] X_1488866_SNP [dm6]	C	T	1.994e^-4	0.814	UTR_3_PRIME Nmdar2 INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3L	1823130	3L_1823130_SNP [dm3] 3L_1823130_SNP [dm6]	T	A	2.002e^-4	0.814	DOWNSTREAM GV1 & 1 other INTERGENIC
2L	8060539	2L_8060539_SNP [dm3] 2L_8060539_SNP [dm6]	G	C	2.005e^-4	0.814	INTRON poe
2R	15115063	2R_15115063_SNP [dm3] 2R_19227558_SNP [dm6]	G	A	2.007e^-4	0.814	SYNONYMOUS_CODING CG7137 DOWNSTREAM hppy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12206626	2R_12206626_SNP [dm3] 2R_16319121_SNP [dm6]	C	T	2.010e^-4	0.814	INTRON CG8060
2L	17155578	2L_17155578_SNP [dm3] 2L_17155578_SNP [dm6]	T	C	2.013e^-4	0.814	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12761432	2R_12761432_SNP [dm3] 2R_16873927_SNP [dm6]	A	T	2.019e^-4	0.814	DOWNSTREAM CG8910 & 1 other INTRON CG6435
X	6207967	X_6207967_SNP [dm3] X_6313934_SNP [dm6]	G	C	2.030e^-4	0.814	INTRON CG15894
3R	25770833	3R_25770833_SNP [dm3] 3R_29945111_SNP [dm6]	G	T	2.037e^-4	0.814	SYNONYMOUS_CODING CG15523
3L	12532670	3L_12532670_SNP [dm3] 3L_12539570_SNP [dm6]	A	C	2.040e^-4	0.814	UTR_3_PRIME sowah INTRON sowah	TF binding site mE1_TFBS_cad
2R	15338115	2R_15338115_SNP [dm3] 2R_19450610_SNP [dm6]	A	G	2.043e^-4	0.814	INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11325637	2R_11325637_SNP [dm3] 2R_15438132_SNP [dm6]	T	C	2.052e^-4	0.814	INTRON CG43729	TF binding site BDTNP1_TFBS_hb
3R	8558822	3R_8558822_SNP [dm3] 3R_12733100_SNP [dm6]	T	C	2.052e^-4	0.814	INTERGENIC
3R	24581268	3R_24581268_SNP [dm3] 3R_28755546_SNP [dm6]	T	A	2.054e^-4	0.814	UTR_3_PRIME CG9997 DOWNSTREAM CG9997
2R	13121202	2R_13121202_SNP [dm3] 2R_17233697_SNP [dm6]	A	C	2.055e^-4	0.814	INTRON mbl
2R	10104438	2R_10104438_SNP [dm3] 2R_14216933_SNP [dm6]	C	A	2.075e^-4	0.814	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	6054575	3L_6054575_SNP [dm3] 3L_6061475_SNP [dm6]	G	A	2.084e^-4	0.814	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
X	20654529	X_20654529_SNP [dm3] X_20783502_SNP [dm6]	T	C	2.089e^-4	0.814	INTRON shakB
3R	25772375	3R_25772375_SNP [dm3] 3R_29946653_SNP [dm6]	G	A	2.090e^-4	0.814	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3R	25771394	3R_25771394_SNP [dm3] 3R_29945672_SNP [dm6]	A	G	2.102e^-4	0.814	SYNONYMOUS_CODING CG15523
2R	905019	2R_905019_SNP [dm3] 2R_5017514_SNP [dm6]	G	C	2.105e^-4	0.814	INTRON Ir41a	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	25777791	3R_25777791_DEL [dm3] 3R_29952069_DEL [dm6]	TT	T	2.105e^-4	0.814	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16923577	2L_16923577_SNP [dm3] 2L_16923577_SNP [dm6]	G	A	2.113e^-4	0.814	INTERGENIC
3R	10233571	3R_10233571_SNP [dm3] 3R_14407849_SNP [dm6]	C	G	2.121e^-4	0.814	INTRON cv-c
3L	8625232	3L_8625232_SNP [dm3] 3L_8632132_SNP [dm6]	A	G	2.123e^-4	0.814	SYNONYMOUS_CODING Cdc6 INTRON Zasp66
3R	26616919	3R_26616919_SNP [dm3] 3R_30791197_SNP [dm6]	C	T	2.129e^-4	0.814	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
2L	7088871	2L_7088871_SNP [dm3] 2L_7088871_SNP [dm6]	C	T	2.135e^-4	0.814	INTERGENIC
3L	7347892	3L_7347892_SNP [dm3] 3L_7354792_SNP [dm6]	G	T	2.135e^-4	0.814	SYNONYMOUS_CODING CTCF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24581217	3R_24581217_SNP [dm3] 3R_28755495_SNP [dm6]	G	C	2.135e^-4	0.814	UTR_3_PRIME CG9997 DOWNSTREAM CG9997
2L	10524747	2L_10524747_SNP [dm3] 2L_10524747_SNP [dm6]	C	A	2.138e^-4	0.814	INTERGENIC
3L	6585365	3L_6585365_SNP [dm3] 3L_6592265_SNP [dm6]	C	T	2.139e^-4	0.814	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2R	15338140	2R_15338140_DEL [dm3] 2R_19450635_DEL [dm6]	AAC	T	2.143e^-4	0.814	INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25766976	3R_25766976_SNP [dm3] 3R_29941254_SNP [dm6]	G	A	2.148e^-4	0.814	SYNONYMOUS_CODING CG15523
X	1375249	X_1375249_SNP [dm3] X_1481216_SNP [dm6]	C	A	2.169e^-4	0.814	UTR_3_PRIME rush DOWNSTREAM sta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8128662	2L_8128662_SNP [dm3] 2L_8128662_SNP [dm6]	C	G	2.170e^-4	0.814	INTRON CG8668	TF binding site mE1_TFBS_Kr
3R	11600475	3R_11600475_SNP [dm3] 3R_15774753_SNP [dm6]	T	G	2.171e^-4	0.814	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525
2R	20972045	2R_20972045_DEL [dm3] 2R_25084522_DEL [dm6]	TTT	T	2.175e^-4	0.814	UPSTREAM gol INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	10623651	3L_10623651_SNP [dm3] 3L_10630551_SNP [dm6]	A	C	2.184e^-4	0.814	SPLICE_SITE_REGION CG42535 UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
2R	19288857	2R_19288857_DEL [dm3] 2R_23401334_DEL [dm6]	AGGTGGCA	A	2.189e^-4	0.814	INTRON CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17214350	3R_17214350_SNP [dm3] 3R_21388628_SNP [dm6]	T	A	2.213e^-4	0.814	UPSTREAM bap INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	19368763	2R_19368763_SNP [dm3] 2R_23481240_SNP [dm6]	G	C	2.218e^-4	0.814	INTRON CG43795
3R	17634082	3R_17634082_SNP [dm3] 3R_21808360_SNP [dm6]	A	T	2.224e^-4	0.814	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4100892	3L_4100892_SNP [dm3] 3L_4100892_SNP [dm6]	G	A	2.226e^-4	0.814	INTRON CG14995
3R	5661869	3R_5661869_SNP [dm3] 3R_9836147_SNP [dm6]	A	G	2.229e^-4	0.814	INTRON Teh1
X	17071635	X_17071635_SNP [dm3] X_17177602_SNP [dm6]	G	T	2.231e^-4	0.814	START_GAINED baz UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	17188017	2R_17188017_SNP [dm3] 2R_21300512_SNP [dm6]	G	A	2.237e^-4	0.814	INTRON CG42672	TF binding site mE1_TFBS_sens
2L	18401009	2L_18401009_SNP [dm3] 2L_18401009_SNP [dm6]	C	G	2.243e^-4	0.814	EXON CR44486
3L	8968474	3L_8968474_SNP [dm3] 3L_8975374_SNP [dm6]	C	T	2.245e^-4	0.814	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	8921600	X_8921600_SNP [dm3] X_9027567_SNP [dm6]	A	T	2.265e^-4	0.814	UTR_3_PRIME rdgA INTRON CR43836
2R	4938987	2R_4938987_DEL [dm3] 2R_9051482_DEL [dm6]	GG	T	2.265e^-4	0.814	INTRON CG13743
X	11950849	X_11950849_SNP [dm3] X_12056816_SNP [dm6]	C	T	2.273e^-4	0.814	UPSTREAM Uch-L5R INTRON CR43960 & 1 other
2R	11053727	2R_11053727_SNP [dm3] 2R_15166222_SNP [dm6]	A	C	2.279e^-4	0.814	INTRON igl
2R	17828930	2R_17828930_SNP [dm3] 2R_21941425_SNP [dm6]	A	C	2.279e^-4	0.814	INTRON Fili
X	20324563	X_20324563_INS [dm3] X_20453536_INS [dm6]	T	TTCTTTTT	2.289e^-4	0.814	INTRON CG32506
2R	17625290	2R_17625290_SNP [dm3] 2R_21737785_SNP [dm6]	A	T	2.290e^-4	0.814	INTERGENIC
2L	8151928	2L_8151928_SNP [dm3] 2L_8151928_SNP [dm6]	T	C	2.294e^-4	0.814	INTRON CG8552 & 1 other
3R	26420475	3R_26420475_SNP [dm3] 3R_30594753_SNP [dm6]	A	G	2.296e^-4	0.814	INTRON CG2246
3L	5846554	3L_5846554_SNP [dm3] 3L_5853454_SNP [dm6]	C	T	2.299e^-4	0.814	INTERGENIC
3L	4566158	3L_4566158_SNP [dm3] 3L_4566158_SNP [dm6]	A	T	2.313e^-4	0.814	INTRON CG42540
3R	24788203	3R_24788203_SNP [dm3] 3R_28962481_SNP [dm6]	G	A	2.313e^-4	0.814	INTRON CG14521
3L	1515714	3L_1515714_SNP [dm3] 3L_1515714_SNP [dm6]	A	G	2.323e^-4	0.814	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9071435	2R_9071435_SNP [dm3] 2R_13183930_SNP [dm6]	A	T	2.325e^-4	0.814	INTRON CG17724 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	18132554	2L_18132554_SNP [dm3] 2L_18132554_SNP [dm6]	G	A	2.325e^-4	0.814	SYNONYMOUS_CODING kel UTR_3_PRIME kel
3L	13091682	3L_13091682_SNP [dm3] 3L_13098582_SNP [dm6]	C	T	2.326e^-4	0.814	INTERGENIC
3L	18274508	3L_18274508_DEL [dm3] 3L_18281408_DEL [dm6]	TGCA	T	2.330e^-4	0.814	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	21889209	2L_21889209_SNP [dm3] 2L_21889209_SNP [dm6]	G	T	2.333e^-4	0.814	DOWNSTREAM CR45362 INTERGENIC
3R	17634317	3R_17634317_SNP [dm3] 3R_21808595_SNP [dm6]	G	A	2.333e^-4	0.814	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19924656	3R_19924656_SNP [dm3] 3R_24098934_SNP [dm6]	T	C	2.338e^-4	0.814	INTRON 4EHP
3R	11595697	3R_11595697_SNP [dm3] 3R_15769975_SNP [dm6]	A	C	2.340e^-4	0.814	INTERGENIC
3R	6547459	3R_6547459_SNP [dm3] 3R_10721737_SNP [dm6]	T	G	2.342e^-4	0.814	INTERGENIC
2R	18053700	2R_18053700_SNP [dm3] 2R_22166195_SNP [dm6]	G	T	2.346e^-4	0.814	INTRON a
2L	18229741	2L_18229741_SNP [dm3] 2L_18229741_SNP [dm6]	A	T	2.349e^-4	0.814	INTRON CG42750
X	622030	X_622030_SNP [dm3] X_727997_SNP [dm6]	T	C	2.354e^-4	0.814	INTRON sdk
X	20389792	X_20389792_SNP [dm3] X_20518765_SNP [dm6]	G	A	2.356e^-4	0.814	UPSTREAM Tak1 INTRON Tak1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	20374051	2L_20374051_SNP [dm3] 2L_20374051_SNP [dm6]	G	A	2.358e^-4	0.814	UTR_5_PRIME Ugt37a1
X	20389664	X_20389664_SNP [dm3] X_20518637_SNP [dm6]	G	A	2.365e^-4	0.814	UPSTREAM Tak1 INTRON Tak1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17948171	2R_17948171_SNP [dm3] 2R_22060666_SNP [dm6]	T	C	2.366e^-4	0.814	UTR_5_PRIME CG13501 UPSTREAM Snp INTRON CG13501	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	21887223	2L_21887223_SNP [dm3] 2L_21887223_SNP [dm6]	T	C	2.367e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8070415	2L_8070415_SNP [dm3] 2L_8070415_SNP [dm6]	G	A	2.374e^-4	0.814	INTRON poe
3R	14183175	3R_14183175_SNP [dm3] 3R_18357453_SNP [dm6]	T	C	2.379e^-4	0.814	INTRON CG15803
3R	22396319	3R_22396319_SNP [dm3] 3R_26570597_SNP [dm6]	C	T	2.380e^-4	0.814	INTRON scrib	TF binding site BDTNP1_TFBS_twi
3L	6590041	3L_6590041_SNP [dm3] 3L_6596941_SNP [dm6]	T	C	2.390e^-4	0.814	SYNONYMOUS_CODING ndl
3R	24105638	3R_24105638_SNP [dm3] 3R_28279916_SNP [dm6]	C	T	2.393e^-4	0.814	INTERGENIC
3R	14608724	3R_14608724_DEL [dm3] 3R_18783002_DEL [dm6]	GACGTCTGTACTTAAA...	G	2.394e^-4	0.814	INTRON CG7720
X	15207806	X_15207806_SNP [dm3] X_15313773_SNP [dm6]	T	C	2.395e^-4	0.814	INTRON gce
X	12150585	X_12150585_SNP [dm3] X_12256552_SNP [dm6]	T	C	2.396e^-4	0.814	INTRON Ten-a
3R	4549412	3R_4549412_SNP [dm3] 3R_8723690_SNP [dm6]	G	T	2.396e^-4	0.814	NON_SYNONYMOUS_CODING CG8145 DOWNSTREAM CG8136	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8153748	2L_8153748_SNP [dm3] 2L_8153748_SNP [dm6]	T	C	2.413e^-4	0.814	SPLICE_SITE_REGION CG43394 INTRON CG8552 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3915214	3L_3915214_INS [dm3] 3L_3915214_INS [dm6]	T	TTTAAGTAAAGTAAT...	2.413e^-4	0.814	INTRON Eip63F-1
3R	25761633	3R_25761633_SNP [dm3] 3R_29935911_SNP [dm6]	A	G	2.419e^-4	0.814	UPSTREAM CG15523 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11845758	3L_11845758_INS [dm3] 3L_11852658_INS [dm6]	G	GCG	2.423e^-4	0.814	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2L	3499413	2L_3499413_SNP [dm3] 2L_3499413_SNP [dm6]	T	G	2.428e^-4	0.814	SYNONYMOUS_CODING tim UTR_3_PRIME tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15759262	3R_15759262_SNP [dm3] 3R_19933540_SNP [dm6]	G	C	2.429e^-4	0.814	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24808773	3R_24808773_SNP [dm3] 3R_28983051_SNP [dm6]	C	A	2.430e^-4	0.814	INTERGENIC
2R	4937754	2R_4937754_SNP [dm3] 2R_9050249_SNP [dm6]	T	C	2.436e^-4	0.814	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3996955	2L_3996955_SNP [dm3] 2L_3996955_SNP [dm6]	T	C	2.442e^-4	0.814	INTERGENIC
2R	8944055	2R_8944055_SNP [dm3] 2R_13056550_SNP [dm6]	G	A	2.451e^-4	0.814	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
2R	15341249	2R_15341249_SNP [dm3] 2R_19453744_SNP [dm6]	T	C	2.454e^-4	0.814	NON_SYNONYMOUS_CODING CG7744
3R	14183183	3R_14183183_SNP [dm3] 3R_18357461_SNP [dm6]	C	T	2.456e^-4	0.814	INTRON CG15803
2L	18351038	2L_18351038_DEL [dm3] 2L_18351038_DEL [dm6]	GG	G	2.467e^-4	0.814	INTRON Fas3
2L	15488439	2L_15488439_SNP [dm3] 2L_15488439_SNP [dm6]	A	T	2.471e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5707439	2R_5707439_SNP [dm3] 2R_9819934_SNP [dm6]	G	A	2.482e^-4	0.814	UTR_5_PRIME CG1648 UPSTREAM CG34033	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	15333410	2R_15333410_SNP [dm3] 2R_19445905_SNP [dm6]	T	A	2.483e^-4	0.814	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3213977	2L_3213977_SNP [dm3] 2L_3213977_SNP [dm6]	T	G	2.490e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6824920	2R_6824920_SNP [dm3] 2R_10937415_SNP [dm6]	G	A	2.498e^-4	0.814	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5365586	X_5365586_SNP [dm3] X_5471553_SNP [dm6]	C	T	2.505e^-4	0.814	INTRON SPR
2L	12143623	2L_12143623_SNP [dm3] 2L_12143623_SNP [dm6]	G	T	2.509e^-4	0.814	INTRON CG31760
3R	13895445	3R_13895445_SNP [dm3] 3R_18069723_SNP [dm6]	A	G	2.512e^-4	0.814	INTERGENIC
X	15172702	X_15172702_INS [dm3] X_15278669_INS [dm6]	C	CC	2.517e^-4	0.814	INTERGENIC
X	3380316	X_3380316_SNP [dm3] X_3486283_SNP [dm6]	T	A	2.519e^-4	0.814	UPSTREAM CG14270 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_sens
2R	12964880	2R_12964880_SNP [dm3] 2R_17077375_SNP [dm6]	G	A	2.519e^-4	0.814	INTRON CG30460
3R	25765353	3R_25765353_SNP [dm3] 3R_29939631_SNP [dm6]	A	G	2.526e^-4	0.814	SPLICE_SITE_REGION CG15523 INTRON CG15523
3R	13880694	3R_13880694_SNP [dm3] 3R_18054972_SNP [dm6]	A	G	2.526e^-4	0.814	INTERGENIC
2R	973414	2R_973414_SNP [dm3] 2R_5085909_SNP [dm6]	G	A	2.528e^-4	0.814	INTERGENIC
X	1360425	X_1360425_SNP [dm3] X_1466392_SNP [dm6]	C	G	2.533e^-4	0.814	UTR_5_PRIME CG14777 UPSTREAM CG14777 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3243295	X_3243295_SNP [dm3] X_3349262_SNP [dm6]	A	G	2.540e^-4	0.814	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25764013	3R_25764013_SNP [dm3] 3R_29938291_SNP [dm6]	T	C	2.542e^-4	0.814	SYNONYMOUS_CODING CG15523 UTR_3_PRIME CG15523
3R	13350272	3R_13350272_SNP [dm3] 3R_17524550_SNP [dm6]	C	T	2.547e^-4	0.814	INTERGENIC
2R	17948170	2R_17948170_SNP [dm3] 2R_22060665_SNP [dm6]	G	T	2.548e^-4	0.814	UTR_5_PRIME CG13501 UPSTREAM Snp INTRON CG13501	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	6589219	3L_6589219_SNP [dm3] 3L_6596119_SNP [dm6]	C	G	2.548e^-4	0.814	SYNONYMOUS_CODING ndl
2R	16331666	2R_16331666_SNP [dm3] 2R_20444161_SNP [dm6]	T	C	2.553e^-4	0.814	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16737226	2R_16737226_SNP [dm3] 2R_20849721_SNP [dm6]	A	C	2.557e^-4	0.814	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12964491	2R_12964491_SNP [dm3] 2R_17076986_SNP [dm6]	G	A	2.561e^-4	0.814	UPSTREAM CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad
3R	14676526	3R_14676526_SNP [dm3] 3R_18850804_SNP [dm6]	G	C	2.567e^-4	0.814	DOWNSTREAM CR45633 & 1 other INTERGENIC
X	1392458	X_1392458_SNP [dm3] X_1498425_SNP [dm6]	G	A	2.571e^-4	0.814	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
2R	20194147	2R_20194147_DEL [dm3] 2R_24306624_DEL [dm6]	AC	G	2.571e^-4	0.814	INTRON betaTub60D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	16893312	3L_16893312_SNP [dm3] 3L_16900212_SNP [dm6]	G	A	2.572e^-4	0.814	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	8162022	3L_8162022_SNP [dm3] 3L_8168922_SNP [dm6]	A	T	2.572e^-4	0.814	INTERGENIC
3L	6585295	3L_6585295_INS [dm3] 3L_6592195_INS [dm6]	C	TG	2.577e^-4	0.814	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
2L	12324280	2L_12324280_SNP [dm3] 2L_12324280_SNP [dm6]	C	G	2.581e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	14676528	3R_14676528_SNP [dm3] 3R_18850806_SNP [dm6]	C	T	2.584e^-4	0.814	DOWNSTREAM CR45633 & 1 other INTERGENIC
3L	16799770	3L_16799770_SNP [dm3] 3L_16806670_SNP [dm6]	G	A	2.587e^-4	0.814	INTRON CG9674 & 1 other	TF binding site mE1_TFBS_Trl
3R	10218881	3R_10218881_SNP [dm3] 3R_14393159_SNP [dm6]	A	T	2.615e^-4	0.814	INTRON cv-c
2R	20945993	2R_20945993_SNP [dm3] 2R_25058470_SNP [dm6]	A	G	2.615e^-4	0.814	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3L	4102873	3L_4102873_SNP [dm3] 3L_4102873_SNP [dm6]	A	C	2.618e^-4	0.814	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21655101	3R_21655101_SNP [dm3] 3R_25829379_SNP [dm6]	A	T	2.621e^-4	0.814	UTR_3_PRIME Mst57Dc DOWNSTREAM Sfp96F
3R	25238115	3R_25238115_SNP [dm3] 3R_29412393_SNP [dm6]	T	G	2.623e^-4	0.814	INTRON Ptp99A
2R	19362301	2R_19362301_SNP [dm3] 2R_23474778_SNP [dm6]	T	A	2.626e^-4	0.814	DOWNSTREAM CG13557 INTRON CG43795
X	7401421	X_7401421_DEL [dm3] X_7507388_DEL [dm6]	TT	T	2.628e^-4	0.814	INTERGENIC
X	3243294	X_3243294_SNP [dm3] X_3349261_SNP [dm6]	G	C	2.629e^-4	0.814	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6001909	3L_6001909_DEL [dm3] 3L_6008809_DEL [dm6]	TCT	T	2.656e^-4	0.814	DOWNSTREAM alphaKap4 INTRON PVRAP
3R	3577436	3R_3577436_SNP [dm3] 3R_7751714_SNP [dm6]	A	G	2.659e^-4	0.814	INTERGENIC
3L	7462155	3L_7462155_SNP [dm3] 3L_7469055_SNP [dm6]	A	G	2.678e^-4	0.814	DOWNSTREAM CG8543 & 3 others INTERGENIC
2L	234226	2L_234226_DEL [dm3] 2L_234226_DEL [dm6]	TT	T	2.680e^-4	0.814	DOWNSTREAM CG13693 INTRON kis
3L	5398239	3L_5398239_SNP [dm3] 3L_5405139_SNP [dm6]	G	A	2.685e^-4	0.814	INTERGENIC
X	2429800	X_2429800_SNP [dm3] X_2535767_SNP [dm6]	T	A	2.687e^-4	0.814	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21689193	2L_21689193_SNP [dm3] 2L_21689193_SNP [dm6]	C	A	2.687e^-4	0.814	INTRON CG31619
2L	21689271	2L_21689271_SNP [dm3] 2L_21689271_SNP [dm6]	C	T	2.687e^-4	0.814	INTRON CG31619
2L	21689275	2L_21689275_SNP [dm3] 2L_21689275_SNP [dm6]	T	G	2.687e^-4	0.814	INTRON CG31619
3R	25777821	3R_25777821_SNP [dm3] 3R_29952099_SNP [dm6]	T	A	2.688e^-4	0.814	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15421608	2R_15421608_SNP [dm3] 2R_19534103_SNP [dm6]	A	C	2.689e^-4	0.814	INTRON sm
2R	4628500	2R_4628500_SNP [dm3] 2R_8740995_SNP [dm6]	T	C	2.691e^-4	0.814	INTRON CG8740
2R	12748049	2R_12748049_DEL [dm3] 2R_16860544_DEL [dm6]	TTTAACTGCTGT...	T	2.694e^-4	0.814	UTR_3_PRIME Dek DOWNSTREAM Dek & 1 other
3R	24804404	3R_24804404_SNP [dm3] 3R_28978682_SNP [dm6]	T	C	2.700e^-4	0.814	INTERGENIC
X	14276803	X_14276803_SNP [dm3] X_14382770_SNP [dm6]	C	T	2.702e^-4	0.814	INTRON dpr8
2L	7839724	2L_7839724_DEL [dm3] 2L_7839724_DEL [dm6]	TGGACTACTTT...	T	2.704e^-4	0.814	UPSTREAM CG14537 DOWNSTREAM CR43100 INTERGENIC
2L	21689175	2L_21689175_SNP [dm3] 2L_21689175_SNP [dm6]	T	C	2.707e^-4	0.814	INTRON CG31619
3L	10333505	3L_10333505_SNP [dm3] 3L_10340405_SNP [dm6]	T	C	2.709e^-4	0.814	INTERGENIC
X	19923412	X_19923412_SNP [dm3] X_20029379_SNP [dm6]	T	C	2.711e^-4	0.814	INTRON Dop2R
3R	17634064	3R_17634064_SNP [dm3] 3R_21808342_SNP [dm6]	T	G	2.714e^-4	0.814	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17255563	X_17255563_SNP [dm3] X_17361530_SNP [dm6]	A	T	2.722e^-4	0.814	INTERGENIC
3L	15903128	3L_15903128_SNP [dm3] 3L_15910028_SNP [dm6]	C	G	2.723e^-4	0.814	INTRON sff	TF binding site mE1_TFBS_cad
3L	10229471	3L_10229471_SNP [dm3] 3L_10236371_SNP [dm6]	A	T	2.733e^-4	0.814	UPSTREAM CR44542 INTERGENIC
3R	18839040	3R_18839040_SNP [dm3] 3R_23013318_SNP [dm6]	C	T	2.748e^-4	0.814	UPSTREAM CR44225 INTRON CG6688	TF binding site mE1_TFBS_zfh1
2L	3491896	2L_3491896_DEL [dm3] 2L_3491896_DEL [dm6]	AC	A	2.749e^-4	0.814	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20246664	X_20246664_SNP [dm3] X_20375637_SNP [dm6]	T	C	2.750e^-4	0.814	DOWNSTREAM CG12679 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	12458053	2L_12458053_SNP [dm3] 2L_12458053_SNP [dm6]	G	A	2.751e^-4	0.814	SYNONYMOUS_CODING bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8056363	2L_8056363_SNP [dm3] 2L_8056363_SNP [dm6]	G	C	2.753e^-4	0.814	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	7718100	2L_7718100_SNP [dm3] 2L_7718100_SNP [dm6]	A	G	2.755e^-4	0.814	SYNONYMOUS_CODING CG13793
3L	3918804	3L_3918804_SNP [dm3] 3L_3918804_SNP [dm6]	C	T	2.759e^-4	0.814	INTRON Eip63F-1
3R	24380534	3R_24380534_SNP [dm3] 3R_28554812_SNP [dm6]	G	A	2.759e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18133933	3L_18133933_SNP [dm3] 3L_18140833_SNP [dm6]	C	T	2.759e^-4	0.814	INTRON gk
2L	18241391	2L_18241391_SNP [dm3] 2L_18241391_SNP [dm6]	G	A	2.765e^-4	0.814	INTRON CG42750
2L	2915551	2L_2915551_SNP [dm3] 2L_2915551_SNP [dm6]	C	T	2.769e^-4	0.814	INTRON lilli
3L	16552083	3L_16552083_SNP [dm3] 3L_16558983_SNP [dm6]	C	A	2.772e^-4	0.814	INTERGENIC
2L	7044569	2L_7044569_SNP [dm3] 2L_7044569_SNP [dm6]	G	A	2.784e^-4	0.814	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12235081	3L_12235081_SNP [dm3] 3L_12241981_SNP [dm6]	C	A	2.786e^-4	0.814	INTRON app
3L	10982711	3L_10982711_SNP [dm3] 3L_10989611_SNP [dm6]	G	C	2.790e^-4	0.814	INTRON klu	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12138917	2L_12138917_SNP [dm3] 2L_12138917_SNP [dm6]	A	C	2.790e^-4	0.814	SYNONYMOUS_CODING Gr33a
2L	3183425	2L_3183425_SNP [dm3] 2L_3183425_SNP [dm6]	A	C	2.792e^-4	0.814	SYNONYMOUS_CODING CG34393
2L	8073165	2L_8073165_SNP [dm3] 2L_8073165_SNP [dm6]	T	C	2.797e^-4	0.814	UPSTREAM MED20 DOWNSTREAM Mcr INTRON Trf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25771996	3R_25771996_SNP [dm3] 3R_29946274_SNP [dm6]	A	G	2.804e^-4	0.814	NON_SYNONYMOUS_CODING CG15523
3R	25772012	3R_25772012_SNP [dm3] 3R_29946290_SNP [dm6]	C	T	2.804e^-4	0.814	SYNONYMOUS_CODING CG15523
X	11276229	X_11276229_SNP [dm3] X_11382196_SNP [dm6]	T	A	2.808e^-4	0.814	INTRON dlg1
X	9210699	X_9210699_INS [dm3] X_9316666_INS [dm6]	C	CA	2.810e^-4	0.814	INTERGENIC
3R	14183083	3R_14183083_SNP [dm3] 3R_18357361_SNP [dm6]	C	T	2.817e^-4	0.814	INTRON CG15803
2L	9982168	2L_9982168_SNP [dm3] 2L_9982168_SNP [dm6]	T	C	2.818e^-4	0.814	INTERGENIC
3R	21915866	3R_21915866_SNP [dm3] 3R_26090144_SNP [dm6]	A	T	2.821e^-4	0.814	INTRON dys	regulatory region REDfly_CRMs
2R	841678	2R_841678_SNP [dm3] 2R_4954173_SNP [dm6]	G	T	2.824e^-4	0.814	INTRON Ir41a	transposable element FlyBase
3R	13895431	3R_13895431_SNP [dm3] 3R_18069709_SNP [dm6]	A	G	2.832e^-4	0.814	INTERGENIC
3L	2278178	3L_2278178_SNP [dm3] 3L_2278178_SNP [dm6]	C	G	2.833e^-4	0.814	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16288966	3R_16288966_SNP [dm3] 3R_20463244_SNP [dm6]	G	T	2.845e^-4	0.814	INTRON Gfrl
X	16814706	X_16814706_SNP [dm3] X_16920673_SNP [dm6]	A	C	2.847e^-4	0.814	INTRON CG4928
X	1568419	X_1568419_SNP [dm3] X_1674386_SNP [dm6]	A	G	2.849e^-4	0.814	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	15932419	3L_15932419_DEL [dm3] 3L_15939319_DEL [dm6]	ATATA	A	2.853e^-4	0.814	INTRON Pka-C3
3R	27138931	3R_27138931_SNP [dm3] 3R_31313209_SNP [dm6]	C	T	2.854e^-4	0.814	INTRON CG34347	TF binding site mE1_TFBS_inv
3R	10327807	3R_10327807_DEL [dm3] 3R_14502085_DEL [dm6]	AA	A	2.855e^-4	0.814	INTRON CR44177
3R	14183173	3R_14183173_SNP [dm3] 3R_18357451_SNP [dm6]	C	T	2.860e^-4	0.814	INTRON CG15803
3L	8135402	3L_8135402_SNP [dm3] 3L_8142302_SNP [dm6]	T	G	2.865e^-4	0.814	UTR_3_PRIME CG13676 DOWNSTREAM mus301
3R	11602340	3R_11602340_SNP [dm3] 3R_15776618_SNP [dm6]	T	C	2.866e^-4	0.814	SYNONYMOUS_CODING CG4525	TF binding site mE1_TFBS_HSA
2L	21689171	2L_21689171_SNP [dm3] 2L_21689171_SNP [dm6]	T	A	2.867e^-4	0.814	INTRON CG31619
2L	21689173	2L_21689173_SNP [dm3] 2L_21689173_SNP [dm6]	G	T	2.867e^-4	0.814	INTRON CG31619
2L	8357655	2L_8357655_SNP [dm3] 2L_8357655_SNP [dm6]	A	G	2.869e^-4	0.814	SYNONYMOUS_CODING CG7627
3L	8968387	3L_8968387_SNP [dm3] 3L_8975287_SNP [dm6]	T	G	2.896e^-4	0.814	UPSTREAM pix INTRON Srp68	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8568383	3L_8568383_SNP [dm3] 3L_8575283_SNP [dm6]	G	C	2.913e^-4	0.814	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10230656	2L_10230656_SNP [dm3] 2L_10230656_SNP [dm6]	G	C	2.914e^-4	0.814	INTRON CG5694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	10225589	3R_10225589_SNP [dm3] 3R_14399867_SNP [dm6]	A	G	2.920e^-4	0.814	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9885927	3L_9885927_SNP [dm3] 3L_9892827_SNP [dm6]	T	C	2.923e^-4	0.814	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 1 other
2R	14275153	2R_14275153_SNP [dm3] 2R_18387648_SNP [dm6]	A	G	2.925e^-4	0.814	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
3R	17971726	3R_17971726_SNP [dm3] 3R_22146004_SNP [dm6]	A	T	2.926e^-4	0.814	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2002691	3L_2002691_SNP [dm3] 3L_2002691_SNP [dm6]	T	C	2.926e^-4	0.814	DOWNSTREAM CG42841 INTERGENIC
3L	18159521	3L_18159521_SNP [dm3] 3L_18166421_SNP [dm6]	G	A	2.930e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20772993	3R_20772993_SNP [dm3] 3R_24947271_SNP [dm6]	A	G	2.931e^-4	0.814	SYNONYMOUS_CODING Nmnat UPSTREAM CG13646 DOWNSTREAM Nmnat
X	8776567	X_8776567_SNP [dm3] X_8882534_SNP [dm6]	G	C	2.937e^-4	0.814	UPSTREAM Moe INTRON Moe
2R	17936438	2R_17936438_SNP [dm3] 2R_22048933_SNP [dm6]	T	A	2.938e^-4	0.814	INTERGENIC
3L	10183456	3L_10183456_SNP [dm3] 3L_10190356_SNP [dm6]	G	A	2.939e^-4	0.814	UTR_3_PRIME ect
3L	4099237	3L_4099237_SNP [dm3] 3L_4099237_SNP [dm6]	T	C	2.947e^-4	0.814	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	14781103	3R_14781103_SNP [dm3] 3R_18955381_SNP [dm6]	T	C	2.951e^-4	0.814	INTRON CG42613 & 1 other
3R	11608542	3R_11608542_SNP [dm3] 3R_15782820_SNP [dm6]	G	T	2.952e^-4	0.814	INTERGENIC
3R	3240095	3R_3240095_SNP [dm3] 3R_7414373_SNP [dm6]	G	A	2.954e^-4	0.814	INTERGENIC
2R	9071438	2R_9071438_SNP [dm3] 2R_13183933_SNP [dm6]	C	T	2.956e^-4	0.814	INTRON CG17724 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	9098360	2R_9098360_SNP [dm3] 2R_13210855_SNP [dm6]	A	G	2.958e^-4	0.814	NON_SYNONYMOUS_CODING CG30058 UTR_5_PRIME CG34312 UTR_3_PRIME CG34235 UPSTREAM CG34312 DOWNSTREAM FLASH
2L	20505589	2L_20505589_SNP [dm3] 2L_20505589_SNP [dm6]	G	A	2.960e^-4	0.814	INTERGENIC
3R	9683530	3R_9683530_SNP [dm3] 3R_13857808_SNP [dm6]	T	G	2.963e^-4	0.814	INTERGENIC
3R	3754015	3R_3754015_SNP [dm3] 3R_7928293_SNP [dm6]	G	T	2.969e^-4	0.814	INTRON dsx	TF binding site mE1_TFBS_cad
3L	15702952	3L_15702952_SNP [dm3] 3L_15709852_SNP [dm6]	G	A	2.969e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5350169	2R_5350169_SNP [dm3] 2R_9462664_SNP [dm6]	A	T	2.984e^-4	0.814	INTRON Camta
3R	5769832	3R_5769832_SNP [dm3] 3R_9944110_SNP [dm6]	A	T	2.987e^-4	0.814	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	9982170	2L_9982170_SNP [dm3] 2L_9982170_SNP [dm6]	A	T	2.989e^-4	0.814	INTERGENIC
2R	14314432	2R_14314432_SNP [dm3] 2R_18426927_SNP [dm6]	C	G	2.992e^-4	0.814	SPLICE_SITE_REGION CG12263 DOWNSTREAM CG5174 INTRON CG12263	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7814481	2L_7814481_SNP [dm3] 2L_7814481_SNP [dm6]	T	C	2.993e^-4	0.814	INTRON LanB1
3R	26816283	3R_26816283_SNP [dm3] 3R_30990561_SNP [dm6]	G	T	2.994e^-4	0.814	UPSTREAM CG31008 INTRON 5-HT7
2R	7136074	2R_7136074_SNP [dm3] 2R_11248569_SNP [dm6]	G	T	2.996e^-4	0.814	UTR_3_PRIME CG34227
2L	7511369	2L_7511369_SNP [dm3] 2L_7511369_SNP [dm6]	C	T	3.013e^-4	0.814	INTRON RapGAP1
2R	13267899	2R_13267899_SNP [dm3] 2R_17380394_SNP [dm6]	C	A	3.014e^-4	0.814	INTERGENIC
2R	959575	2R_959575_SNP [dm3] 2R_5072070_SNP [dm6]	T	C	3.017e^-4	0.814	INTERGENIC
2R	15340342	2R_15340342_SNP [dm3] 2R_19452837_SNP [dm6]	T	C	3.023e^-4	0.814	INTRON CG7744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	25766329	3R_25766329_SNP [dm3] 3R_29940607_SNP [dm6]	G	A	3.023e^-4	0.814	INTRON CG15523
3L	14271752	3L_14271752_SNP [dm3] 3L_14278652_SNP [dm6]	A	C	3.026e^-4	0.814	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2211693	3L_2211693_SNP [dm3] 3L_2211693_SNP [dm6]	A	G	3.027e^-4	0.814	SYNONYMOUS_CODING CG15878	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26468873	3R_26468873_SNP [dm3] 3R_30643151_SNP [dm6]	T	C	3.031e^-4	0.814	DOWNSTREAM CG31013 INTERGENIC
2L	4016578	2L_4016578_SNP [dm3] 2L_4016578_SNP [dm6]	C	T	3.036e^-4	0.814	INTERGENIC
3R	3971795	3R_3971795_SNP [dm3] 3R_8146073_SNP [dm6]	T	A	3.041e^-4	0.814	INTERGENIC
3L	5067223	3L_5067223_SNP [dm3] 3L_5067223_SNP [dm6]	C	G	3.043e^-4	0.814	INTRON Con
3R	25761377	3R_25761377_SNP [dm3] 3R_29935655_SNP [dm6]	T	G	3.043e^-4	0.814	SYNONYMOUS_CODING eIF2B-alpha UPSTREAM CG15523	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4932957	2R_4932957_SNP [dm3] 2R_9045452_SNP [dm6]	A	G	3.049e^-4	0.814	UTR_3_PRIME CG13743 UPSTREAM PPO2
2L	9360091	2L_9360091_SNP [dm3] 2L_9360091_SNP [dm6]	G	A	3.056e^-4	0.814	INTERGENIC
3L	14659680	3L_14659680_SNP [dm3] 3L_14666580_SNP [dm6]	A	C	3.057e^-4	0.814	INTRON dlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16175860	2L_16175860_SNP [dm3] 2L_16175860_SNP [dm6]	C	T	3.067e^-4	0.814	SYNONYMOUS_CODING Ca-alpha1D
2R	9039860	2R_9039860_SNP [dm3] 2R_13152355_SNP [dm6]	T	A	3.067e^-4	0.814	DOWNSTREAM TppII INTRON Ack-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4099236	3L_4099236_SNP [dm3] 3L_4099236_SNP [dm6]	C	A	3.093e^-4	0.814	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	11276285	X_11276285_SNP [dm3] X_11382252_SNP [dm6]	A	C	3.101e^-4	0.814	INTRON dlg1
2R	12110394	2R_12110394_SNP [dm3] 2R_16222889_SNP [dm6]	T	A	3.110e^-4	0.814	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
3L	15900836	3L_15900836_SNP [dm3] 3L_15907736_SNP [dm6]	C	A	3.119e^-4	0.814	INTRON sff
2R	1685667	2R_1685667_SNP [dm3] 2R_5798162_SNP [dm6]	C	T	3.124e^-4	0.814	SYNONYMOUS_CODING Or42b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13259527	3L_13259527_SNP [dm3] 3L_13266427_SNP [dm6]	G	A	3.128e^-4	0.814	INTRON caps
2R	19600138	2R_19600138_SNP [dm3] 2R_23712615_SNP [dm6]	T	G	3.130e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7895083	2R_7895083_SNP [dm3] 2R_12007578_SNP [dm6]	C	G	3.130e^-4	0.814	INTRON otk
3R	10039867	3R_10039867_SNP [dm3] 3R_14214145_SNP [dm6]	T	G	3.130e^-4	0.814	NON_SYNONYMOUS_CODING Dop1R1
3R	6452925	3R_6452925_SNP [dm3] 3R_10627203_SNP [dm6]	G	A	3.138e^-4	0.814	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3911025	2R_3911025_SNP [dm3] 2R_8023520_SNP [dm6]	G	A	3.146e^-4	0.814	EXON CR45267
3L	6639777	3L_6639777_SNP [dm3] 3L_6646677_SNP [dm6]	T	C	3.147e^-4	0.814	INTERGENIC
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	3.152e^-4	0.814	INTRON kel
2R	16716907	2R_16716907_SNP [dm3] 2R_20829402_SNP [dm6]	A	G	3.156e^-4	0.814	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8140702	2L_8140702_SNP [dm3] 2L_8140702_SNP [dm6]	A	G	3.157e^-4	0.814	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552 DOWNSTREAM mir-4984	TF binding site mE1_TFBS_cad
2L	17155326	2L_17155326_SNP [dm3] 2L_17155326_SNP [dm6]	A	T	3.159e^-4	0.814	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
3R	23889837	3R_23889837_SNP [dm3] 3R_28064115_SNP [dm6]	G	A	3.159e^-4	0.814	INTRON CG34362
2R	4934955	2R_4934955_SNP [dm3] 2R_9047450_SNP [dm6]	A	G	3.162e^-4	0.814	INTRON CG13743
3R	17717689	3R_17717689_SNP [dm3] 3R_21891967_SNP [dm6]	C	G	3.168e^-4	0.814	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10641787	2L_10641787_SNP [dm3] 2L_10641787_SNP [dm6]	C	G	3.169e^-4	0.814	SYNONYMOUS_CODING CG31872	TF binding site mE1_TFBS_HSA
3L	13895902	3L_13895902_SNP [dm3] 3L_13902802_SNP [dm6]	A	T	3.171e^-4	0.814	UTR_5_PRIME dysc
3L	9193032	3L_9193032_SNP [dm3] 3L_9199932_SNP [dm6]	C	T	3.177e^-4	0.814	INTERGENIC
3L	17125955	3L_17125955_SNP [dm3] 3L_17132855_SNP [dm6]	C	T	3.179e^-4	0.814	INTRON Rbp6
2R	18534776	2R_18534776_SNP [dm3] 2R_22647271_SNP [dm6]	G	A	3.190e^-4	0.814	UPSTREAM CG2852 & 1 other DOWNSTREAM CG34446 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	530392	2L_530392_SNP [dm3] 2L_530392_SNP [dm6]	G	C	3.191e^-4	0.814	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	8792198	3L_8792198_SNP [dm3] 3L_8799098_SNP [dm6]	G	T	3.192e^-4	0.814	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	18266960	2R_18266960_SNP [dm3] 2R_22379455_SNP [dm6]	T	C	3.192e^-4	0.814	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
3R	23374689	3R_23374689_SNP [dm3] 3R_27548967_SNP [dm6]	G	A	3.195e^-4	0.814	SYNONYMOUS_CODING Klp98A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12149536	3L_12149536_SNP [dm3] 3L_12156436_SNP [dm6]	A	G	3.198e^-4	0.814	UTR_3_PRIME Nrx-IV DOWNSTREAM CG9760
X	4532254	X_4532254_SNP [dm3] X_4638221_SNP [dm6]	C	T	3.202e^-4	0.814	SYNONYMOUS_CODING pon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11246192	X_11246192_SNP [dm3] X_11352159_SNP [dm6]	G	A	3.211e^-4	0.814	SYNONYMOUS_CODING CG1737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	16331868	2R_16331868_SNP [dm3] 2R_20444363_SNP [dm6]	G	A	3.225e^-4	0.814	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18330531	2L_18330531_INS [dm3] 2L_18330531_INS [dm6]	T	TCCATGGCCAT...	3.232e^-4	0.814	INTRON Fas3
3R	16549069	3R_16549069_DEL [dm3] 3R_20723347_DEL [dm6]	CCCT	C	3.234e^-4	0.814	INTERGENIC
2L	21689168	2L_21689168_SNP [dm3] 2L_21689168_SNP [dm6]	T	A	3.235e^-4	0.814	INTRON CG31619
2L	20351728	2L_20351728_SNP [dm3] 2L_20351728_SNP [dm6]	T	C	3.236e^-4	0.814	INTRON RtGEF
2L	18362211	2L_18362211_SNP [dm3] 2L_18362211_SNP [dm6]	C	T	3.238e^-4	0.814	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5633600	2L_5633600_SNP [dm3] 2L_5633600_SNP [dm6]	C	A	3.261e^-4	0.814	UPSTREAM CR44822 INTRON CG31646
2L	12139237	2L_12139237_SNP [dm3] 2L_12139237_SNP [dm6]	C	T	3.262e^-4	0.814	INTRON Gr33a
X	17255694	X_17255694_SNP [dm3] X_17361661_SNP [dm6]	T	A	3.262e^-4	0.814	INTERGENIC
2L	10494830	2L_10494830_SNP [dm3] 2L_10494830_SNP [dm6]	A	G	3.266e^-4	0.814	INTRON Myo31DF
3R	25348202	3R_25348202_SNP [dm3] 3R_29522480_SNP [dm6]	G	A	3.267e^-4	0.814	INTERGENIC
2R	7911972	2R_7911972_SNP [dm3] 2R_12024467_SNP [dm6]	T	C	3.269e^-4	0.814	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17778238	3R_17778238_SNP [dm3] 3R_21952516_SNP [dm6]	T	C	3.269e^-4	0.814	INTRON Eip93F
2L	11415211	2L_11415211_SNP [dm3] 2L_11415211_SNP [dm6]	G	A	3.270e^-4	0.814	INTERGENIC
3R	6836720	3R_6836720_SNP [dm3] 3R_11010998_SNP [dm6]	T	C	3.279e^-4	0.814	INTRON CG34114
2R	15742681	2R_15742681_SNP [dm3] 2R_19855176_SNP [dm6]	T	G	3.279e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20864646	3R_20864646_SNP [dm3] 3R_25038924_SNP [dm6]	A	G	3.286e^-4	0.814	UPSTREAM bai & 1 other DOWNSTREAM CG31115 INTRON CG6422	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18763762	3L_18763762_SNP [dm3] 3L_18770662_SNP [dm6]	A	G	3.287e^-4	0.814	INTRON ftz-f1
2R	4952156	2R_4952156_SNP [dm3] 2R_9064651_SNP [dm6]	A	C	3.288e^-4	0.814	INTRON ana	regulatory region REDfly_CRMs
3R	6547438	3R_6547438_SNP [dm3] 3R_10721716_SNP [dm6]	T	A	3.293e^-4	0.814	INTERGENIC
2L	20936134	2L_20936134_SNP [dm3] 2L_20936134_SNP [dm6]	C	A	3.293e^-4	0.814	INTERGENIC
2L	15945276	2L_15945276_SNP [dm3] 2L_15945276_SNP [dm6]	G	C	3.299e^-4	0.814	INTRON beat-Ib
2L	639269	2L_639269_SNP [dm3] 2L_639269_SNP [dm6]	G	A	3.299e^-4	0.814	DOWNSTREAM ds INTERGENIC
3L	6124345	3L_6124345_INS [dm3] 3L_6131245_INS [dm6]	T	TA	3.300e^-4	0.814	UTR_3_PRIME Cpr65Au UPSTREAM Lcp65Ag3 DOWNSTREAM Cpr65Au
3R	23166457	3R_23166457_SNP [dm3] 3R_27340735_SNP [dm6]	A	G	3.302e^-4	0.814	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11054220	2R_11054220_SNP [dm3] 2R_15166715_SNP [dm6]	T	C	3.303e^-4	0.814	INTRON igl
3R	25641292	3R_25641292_SNP [dm3] 3R_29815570_SNP [dm6]	A	G	3.307e^-4	0.814	SYNONYMOUS_CODING Vps16B DOWNSTREAM ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18025036	3R_18025036_SNP [dm3] 3R_22199314_SNP [dm6]	T	C	3.312e^-4	0.814	INTRON SKIP & 1 other
3L	13851221	3L_13851221_SNP [dm3] 3L_13858121_SNP [dm6]	C	A	3.318e^-4	0.814	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10786318	3L_10786318_SNP [dm3] 3L_10793218_SNP [dm6]	A	G	3.326e^-4	0.814	INTERGENIC
3L	2002838	3L_2002838_DEL [dm3] 3L_2002838_DEL [dm6]	TT	T	3.329e^-4	0.814	DOWNSTREAM CG42841 INTERGENIC
3L	12405673	3L_12405673_SNP [dm3] 3L_12412573_SNP [dm6]	G	A	3.332e^-4	0.814	INTRON CG32103
X	20002786	X_20002786_SNP [dm3] X_20108753_SNP [dm6]	G	T	3.342e^-4	0.814	INTERGENIC
3R	20768483	3R_20768483_SNP [dm3] 3R_24942761_SNP [dm6]	A	T	3.343e^-4	0.814	INTRON ssh	TF binding site mE1_TFBS_chinmo
3L	7345892	3L_7345892_SNP [dm3] 3L_7352792_SNP [dm6]	C	T	3.343e^-4	0.814	UTR_3_PRIME qm DOWNSTREAM CTCF INTRON qm
2R	13767614	2R_13767614_SNP [dm3] 2R_17880109_SNP [dm6]	T	C	3.345e^-4	0.814	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
3R	25762060	3R_25762060_SNP [dm3] 3R_29936338_SNP [dm6]	C	T	3.354e^-4	0.814	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25738631	3R_25738631_INS [dm3] 3R_29912909_INS [dm6]	C	CC	3.362e^-4	0.814	DOWNSTREAM Capa & 1 other INTERGENIC
3R	25770287	3R_25770287_SNP [dm3] 3R_29944565_SNP [dm6]	A	G	3.368e^-4	0.814	SYNONYMOUS_CODING CG15523
3R	26616799	3R_26616799_SNP [dm3] 3R_30791077_SNP [dm6]	G	A	3.382e^-4	0.814	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
3R	3541124	3R_3541124_SNP [dm3] 3R_7715402_SNP [dm6]	T	G	3.384e^-4	0.814	INTERGENIC
2L	7090261	2L_7090261_SNP [dm3] 2L_7090261_SNP [dm6]	G	A	3.385e^-4	0.814	INTERGENIC
2R	15340930	2R_15340930_SNP [dm3] 2R_19453425_SNP [dm6]	T	C	3.386e^-4	0.814	INTRON CG7744	TF binding site BDTNP1_TFBS_dl
3R	25260422	3R_25260422_SNP [dm3] 3R_29434700_SNP [dm6]	G	A	3.390e^-4	0.814	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21738630	3R_21738630_SNP [dm3] 3R_25912908_SNP [dm6]	C	T	3.391e^-4	0.814	UTR_3_PRIME CG42235 INTRON CG42235
2L	2915564	2L_2915564_SNP [dm3] 2L_2915564_SNP [dm6]	A	T	3.393e^-4	0.814	INTRON lilli
2R	18406559	2R_18406559_SNP [dm3] 2R_22519054_SNP [dm6]	A	G	3.397e^-4	0.814	INTRON px
X	867594	X_867594_SNP [dm3] X_973561_SNP [dm6]	C	A	3.397e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_cad
2R	932361	2R_932361_SNP [dm3] 2R_5044856_SNP [dm6]	G	T	3.400e^-4	0.814	INTERGENIC	transposable element FlyBase
2R	5716235	2R_5716235_SNP [dm3] 2R_9828730_SNP [dm6]	A	G	3.405e^-4	0.814	SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad
3L	4099530	3L_4099530_DEL [dm3] 3L_4099530_DEL [dm6]	ACCC	A	3.405e^-4	0.814	INTRON CG14995	TF binding site mE1_TFBS_inv
3R	11601321	3R_11601321_SNP [dm3] 3R_15775599_SNP [dm6]	G	A	3.414e^-4	0.814	UPSTREAM CR45206 & 1 other INTRON CG4525
2L	8060400	2L_8060400_SNP [dm3] 2L_8060400_SNP [dm6]	C	T	3.418e^-4	0.814	SYNONYMOUS_CODING poe
2R	19536496	2R_19536496_SNP [dm3] 2R_23648973_SNP [dm6]	T	A	3.430e^-4	0.814	INTRON retn	TF binding site BDTNP1_TFBS_dl
3R	25037911	3R_25037911_SNP [dm3] 3R_29212189_SNP [dm6]	C	T	3.433e^-4	0.814	INTERGENIC
2R	9761717	2R_9761717_SNP [dm3] 2R_13874212_SNP [dm6]	C	A	3.435e^-4	0.814	INTRON shot	TF binding site mE1_TFBS_cad
3L	12481484	3L_12481484_SNP [dm3] 3L_12488384_SNP [dm6]	T	A	3.438e^-4	0.814	INTRON CG10660
2R	12761434	2R_12761434_SNP [dm3] 2R_16873929_SNP [dm6]	A	T	3.453e^-4	0.814	DOWNSTREAM CG8910 & 1 other INTRON CG6435
3R	24631767	3R_24631767_INS [dm3] 3R_28806045_INS [dm6]	T	TAATGTTTTT	3.453e^-4	0.814	UPSTREAM CheB98a INTERGENIC
2R	12731982	2R_12731982_SNP [dm3] 2R_16844477_SNP [dm6]	T	C	3.466e^-4	0.814	SYNONYMOUS_CODING Ugt37c1	TF binding site mE1_TFBS_sens
3L	9249843	3L_9249843_INS [dm3] 3L_9256743_INS [dm6]	A	AA	3.468e^-4	0.814	INTRON GluRIB
3L	4910692	3L_4910692_SNP [dm3] 3L_4910692_SNP [dm6]	C	T	3.470e^-4	0.814	UTR_5_PRIME Rh50
2R	14448071	2R_14448071_SNP [dm3] 2R_18560566_SNP [dm6]	C	T	3.479e^-4	0.814	NON_SYNONYMOUS_CODING GEFmeso UTR_5_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16736495	2L_16736495_SNP [dm3] 2L_16736495_SNP [dm6]	T	C	3.480e^-4	0.814	SYNONYMOUS_CODING glu
2L	16736488	2L_16736488_SNP [dm3] 2L_16736488_SNP [dm6]	G	A	3.483e^-4	0.814	SYNONYMOUS_CODING glu
3L	14627399	3L_14627399_SNP [dm3] 3L_14634299_SNP [dm6]	G	A	3.489e^-4	0.814	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8155370	X_8155370_SNP [dm3] X_8261337_SNP [dm6]	A	T	3.492e^-4	0.814	INTRON CG1632
3R	26469190	3R_26469190_SNP [dm3] 3R_30643468_SNP [dm6]	T	A	3.494e^-4	0.814	DOWNSTREAM CG31013 INTERGENIC
3L	6458297	3L_6458297_SNP [dm3] 3L_6465197_SNP [dm6]	A	C	3.498e^-4	0.814	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9565553	3L_9565553_SNP [dm3] 3L_9572453_SNP [dm6]	G	C	3.499e^-4	0.814	INTRON CG42673
3R	25758291	3R_25758291_SNP [dm3] 3R_29932569_SNP [dm6]	G	A	3.505e^-4	0.814	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13846801	3R_13846801_SNP [dm3] 3R_18021079_SNP [dm6]	A	G	3.506e^-4	0.814	UTR_3_PRIME DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7686441	2L_7686441_SNP [dm3] 2L_7686441_SNP [dm6]	G	C	3.506e^-4	0.814	NON_SYNONYMOUS_CODING Myo28B1
2R	3733673	2R_3733673_SNP [dm3] 2R_7846168_SNP [dm6]	T	C	3.508e^-4	0.814	INTRON Dgk
X	1382913	X_1382913_SNP [dm3] X_1488880_SNP [dm6]	G	A	3.511e^-4	0.814	UTR_3_PRIME Nmdar2 INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
2L	8067347	2L_8067347_SNP [dm3] 2L_8067347_SNP [dm6]	C	T	3.512e^-4	0.814	SYNONYMOUS_CODING poe
2R	8800863	2R_8800863_DEL [dm3] 2R_12913358_DEL [dm6]	AT	G	3.529e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20933299	2R_20933299_SNP [dm3] 2R_25045776_SNP [dm6]	C	A	3.535e^-4	0.816	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14276613	2R_14276613_SNP [dm3] 2R_18389108_SNP [dm6]	T	C	3.538e^-4	0.816	SYNONYMOUS_CODING CG16836 UPSTREAM CG15065 DOWNSTREAM IM3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	890304	2R_890304_SNP [dm3] 2R_5002799_SNP [dm6]	C	A	3.539e^-4	0.816	INTRON Ir41a
3L	8256600	3L_8256600_SNP [dm3] 3L_8263500_SNP [dm6]	T	C	3.560e^-4	0.82	INTRON Dscam4
X	13548690	X_13548690_SNP [dm3] X_13654657_SNP [dm6]	A	G	3.572e^-4	0.821	INTRON NFAT
2L	4530216	2L_4530216_SNP [dm3] 2L_4530216_SNP [dm6]	T	C	3.575e^-4	0.821	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad
2R	18267516	2R_18267516_SNP [dm3] 2R_22380011_SNP [dm6]	C	T	3.576e^-4	0.821	INTRON wrapper
3L	8162021	3L_8162021_SNP [dm3] 3L_8168921_SNP [dm6]	C	A	3.584e^-4	0.821	INTERGENIC
2L	21846753	2L_21846753_SNP [dm3] 2L_21846753_SNP [dm6]	A	C	3.587e^-4	0.821	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4910676	3L_4910676_SNP [dm3] 3L_4910676_SNP [dm6]	G	C	3.602e^-4	0.823	UTR_5_PRIME Rh50
3L	15896506	3L_15896506_SNP [dm3] 3L_15903406_SNP [dm6]	A	G	3.606e^-4	0.823	SYNONYMOUS_CODING sff
2R	8924715	2R_8924715_SNP [dm3] 2R_13037210_SNP [dm6]	T	G	3.607e^-4	0.823	INTERGENIC
3R	12515108	3R_12515108_SNP [dm3] 3R_16689386_SNP [dm6]	G	T	3.609e^-4	0.823	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	17942324	3R_17942324_SNP [dm3] 3R_22116602_SNP [dm6]	T	A	3.627e^-4	0.823	SYNONYMOUS_CODING Ir94b
2L	18237173	2L_18237173_DEL [dm3] 2L_18237173_DEL [dm6]	AAG	T	3.629e^-4	0.823	INTRON CG42750
3L	4063459	3L_4063459_SNP [dm3] 3L_4063459_SNP [dm6]	G	A	3.633e^-4	0.823	NON_SYNONYMOUS_CODING dib DOWNSTREAM wit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8695087	3L_8695087_SNP [dm3] 3L_8701987_SNP [dm6]	C	T	3.640e^-4	0.823	INTERGENIC
3R	20864986	3R_20864986_SNP [dm3] 3R_25039264_SNP [dm6]	A	C	3.656e^-4	0.823	UPSTREAM bai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17073332	3R_17073332_DEL [dm3] 3R_21247610_DEL [dm6]	TTGCCCTT	T	3.663e^-4	0.823	INTRON ETHR
2R	9124156	2R_9124156_SNP [dm3] 2R_13236651_SNP [dm6]	G	C	3.666e^-4	0.823	NON_SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_sens
2R	19600375	2R_19600375_SNP [dm3] 2R_23712852_SNP [dm6]	T	G	3.673e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3499440	2L_3499440_SNP [dm3] 2L_3499440_SNP [dm6]	T	G	3.674e^-4	0.823	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17541384	3R_17541384_SNP [dm3] 3R_21715662_SNP [dm6]	T	A	3.686e^-4	0.823	INTRON CG31176
3R	25296654	3R_25296654_SNP [dm3] 3R_29470932_SNP [dm6]	C	T	3.687e^-4	0.823	INTRON Ptp99A
X	17073666	X_17073666_DEL [dm3] X_17179633_DEL [dm6]	GTATCGGATCGGAT...	G	3.687e^-4	0.823	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20080028	3L_20080028_DEL [dm3] 3L_20086928_DEL [dm6]	TCCAACCAAA	T	3.689e^-4	0.823	INTRON sNPF-R
2L	17293520	2L_17293520_SNP [dm3] 2L_17293520_SNP [dm6]	C	T	3.693e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6892201	3L_6892201_SNP [dm3] 3L_6899101_SNP [dm6]	G	A	3.700e^-4	0.823	INTERGENIC
X	6792546	X_6792546_SNP [dm3] X_6898513_SNP [dm6]	A	G	3.701e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4935877	3L_4935877_SNP [dm3] 3L_4935877_SNP [dm6]	C	A	3.701e^-4	0.823	DOWNSTREAM Con INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14283029	X_14283029_SNP [dm3] X_14388996_SNP [dm6]	G	A	3.703e^-4	0.823	INTRON dpr8
2R	20936285	2R_20936285_SNP [dm3] 2R_25048762_SNP [dm6]	C	T	3.705e^-4	0.823	INTRON gsb-n	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16624280	2L_16624280_SNP [dm3] 2L_16624280_SNP [dm6]	C	T	3.716e^-4	0.823	INTRON CG42389
2R	19288946	2R_19288946_SNP [dm3] 2R_23401423_SNP [dm6]	A	G	3.719e^-4	0.823	INTRON CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8831115	2R_8831115_SNP [dm3] 2R_12943610_SNP [dm6]	A	G	3.720e^-4	0.823	SYNONYMOUS_CODING Mdr49	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5504251	2R_5504251_SNP [dm3] 2R_9616746_SNP [dm6]	T	C	3.721e^-4	0.823	INTRON Mmp2
2L	21934905	2L_21934905_DEL [dm3] 2L_21934905_DEL [dm6]	GG	G	3.721e^-4	0.823	INTERGENIC
2L	16702643	2L_16702643_SNP [dm3] 2L_16702643_SNP [dm6]	A	C	3.729e^-4	0.823	EXON CR43670	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	25060747	3R_25060747_SNP [dm3] 3R_29235025_SNP [dm6]	C	G	3.729e^-4	0.823	UTR_3_PRIME CG15817 DOWNSTREAM CG11951
3L	10171103	3L_10171103_SNP [dm3] 3L_10178003_SNP [dm6]	C	G	3.730e^-4	0.823	INTRON dpr10
3R	23428517	3R_23428517_SNP [dm3] 3R_27602795_SNP [dm6]	T	C	3.733e^-4	0.823	SPLICE_SITE_REGION dsd INTRON dsd
2L	13304080	2L_13304080_SNP [dm3] 2L_13304080_SNP [dm6]	C	T	3.737e^-4	0.823	UTR_3_PRIME CG43778 UPSTREAM CG16825
2L	21898905	2L_21898905_SNP [dm3] 2L_21898905_SNP [dm6]	C	T	3.754e^-4	0.824	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10525008	2L_10525008_SNP [dm3] 2L_10525008_SNP [dm6]	T	A	3.759e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22409826	3R_22409826_DEL [dm3] 3R_26584104_DEL [dm6]	TT	T	3.763e^-4	0.824	DOWNSTREAM scrib INTRON scrib
3L	8135666	3L_8135666_SNP [dm3] 3L_8142566_SNP [dm6]	C	A	3.764e^-4	0.824	DOWNSTREAM mus301 INTRON CG13676	TF binding site mE1_TFBS_cad
3L	13513587	3L_13513587_SNP [dm3] 3L_13520487_SNP [dm6]	C	G	3.765e^-4	0.824	UPSTREAM CG10710 INTERGENIC
2L	7705440	2L_7705440_SNP [dm3] 2L_7705440_SNP [dm6]	A	G	3.785e^-4	0.827	NON_SYNONYMOUS_CODING Tep3
3R	10890872	3R_10890872_SNP [dm3] 3R_15065150_SNP [dm6]	T	C	3.794e^-4	0.828	INTRON dpr9
2R	19343401	2R_19343401_SNP [dm3] 2R_23455878_SNP [dm6]	A	T	3.796e^-4	0.828	INTRON CG43795
3L	9786195	3L_9786195_SNP [dm3] 3L_9793095_SNP [dm6]	T	C	3.803e^-4	0.828	INTRON Zasp67
3R	24960966	3R_24960966_SNP [dm3] 3R_29135244_SNP [dm6]	T	A	3.810e^-4	0.828	INTRON Vha100-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14915674	X_14915674_SNP [dm3] X_15021641_SNP [dm6]	G	C	3.813e^-4	0.828	INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10218902	3R_10218902_SNP [dm3] 3R_14393180_SNP [dm6]	A	G	3.817e^-4	0.828	INTRON cv-c
3L	8769303	3L_8769303_SNP [dm3] 3L_8776203_SNP [dm6]	A	G	3.818e^-4	0.828	INTRON Fhos
2R	12142629	2R_12142629_SNP [dm3] 2R_16255124_SNP [dm6]	T	C	3.834e^-4	0.828	INTRON CngA
2R	882652	2R_882652_SNP [dm3] 2R_4995147_SNP [dm6]	T	G	3.835e^-4	0.828	INTRON Ir41a
3R	25358160	3R_25358160_SNP [dm3] 3R_29532438_SNP [dm6]	G	C	3.839e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21889816	2L_21889816_SNP [dm3] 2L_21889816_SNP [dm6]	C	A	3.845e^-4	0.828	EXON CR45362	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10494034	3L_10494034_SNP [dm3] 3L_10500934_SNP [dm6]	G	C	3.851e^-4	0.828	INTRON A2bp1
3L	9629066	3L_9629066_SNP [dm3] 3L_9635966_SNP [dm6]	T	C	3.855e^-4	0.828	SYNONYMOUS_CODING fry
X	15533774	X_15533774_SNP [dm3] X_15639741_SNP [dm6]	T	C	3.856e^-4	0.828	INTERGENIC
2R	8939256	2R_8939256_INS [dm3] 2R_13051751_INS [dm6]	G	GCAATTGCTAATGAATTCTC...	3.856e^-4	0.828	INTERGENIC
3L	6134818	3L_6134818_SNP [dm3] 3L_6141718_SNP [dm6]	G	T	3.872e^-4	0.828	DOWNSTREAM Cpr65Aw INTERGENIC
3R	14055415	3R_14055415_SNP [dm3] 3R_18229693_SNP [dm6]	T	G	3.875e^-4	0.828	DOWNSTREAM Mdh2 INTERGENIC
2L	20398832	2L_20398832_SNP [dm3] 2L_20398832_SNP [dm6]	A	T	3.880e^-4	0.828	INTRON CG10947
3R	25378391	3R_25378391_DEL [dm3] 3R_29552669_DEL [dm6]	AGA	A	3.883e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8968477	3L_8968477_SNP [dm3] 3L_8975377_SNP [dm6]	C	T	3.885e^-4	0.828	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	17652268	3R_17652268_SNP [dm3] 3R_21826546_SNP [dm6]	A	C	3.885e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9568065	2R_9568065_SNP [dm3] 2R_13680560_SNP [dm6]	G	A	3.889e^-4	0.828	INTRON fas
3R	18839610	3R_18839610_SNP [dm3] 3R_23013888_SNP [dm6]	A	C	3.892e^-4	0.828	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3L	9628429	3L_9628429_SNP [dm3] 3L_9635329_SNP [dm6]	G	A	3.898e^-4	0.828	INTRON fry
2L	20404914	2L_20404914_INS [dm3] 2L_20404914_INS [dm6]	T	TTT	3.902e^-4	0.828	INTRON CG10947
3R	20589743	3R_20589743_SNP [dm3] 3R_24764021_SNP [dm6]	T	G	3.907e^-4	0.828	INTRON AstA
X	4697307	X_4697307_SNP [dm3] X_4803274_SNP [dm6]	C	G	3.907e^-4	0.828	NON_SYNONYMOUS_CODING CG2861
2R	7326950	2R_7326950_SNP [dm3] 2R_11439445_SNP [dm6]	A	G	3.920e^-4	0.829	INTRON CG7777
2L	7815406	2L_7815406_SNP [dm3] 2L_7815406_SNP [dm6]	T	C	3.922e^-4	0.829	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14627507	3L_14627507_SNP [dm3] 3L_14634407_SNP [dm6]	C	T	3.928e^-4	0.829	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12991045	3L_12991045_SNP [dm3] 3L_12997945_SNP [dm6]	A	T	3.930e^-4	0.829	DOWNSTREAM CG11262 INTERGENIC
3L	10908520	3L_10908520_INS [dm3] 3L_10915420_INS [dm6]	A	ACA	3.933e^-4	0.829	INTERGENIC
3L	12628604	3L_12628604_SNP [dm3] 3L_12635504_SNP [dm6]	G	A	3.947e^-4	0.83	INTRON CR32111	TF binding site mE1_TFBS_HSA
3L	9099845	3L_9099845_DEL [dm3] 3L_9106745_DEL [dm6]	AT	G	3.963e^-4	0.83	UTR_3_PRIME bol INTRON bol
3L	5826187	3L_5826187_SNP [dm3] 3L_5833087_SNP [dm6]	G	A	3.964e^-4	0.83	INTRON vn	TF binding site mE1_TFBS_chinmo
2L	20865856	2L_20865856_SNP [dm3] 2L_20865856_SNP [dm6]	C	A	3.970e^-4	0.83	INTRON CG9338	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18315841	2R_18315841_SNP [dm3] 2R_22428336_SNP [dm6]	T	C	3.972e^-4	0.83	SYNONYMOUS_CODING ppk12
X	9254959	X_9254959_SNP [dm3] X_9360926_SNP [dm6]	T	C	3.975e^-4	0.83	SPLICE_SITE_REGION mgl INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11920107	X_11920107_SNP [dm3] X_12026074_SNP [dm6]	T	C	3.975e^-4	0.83	SYNONYMOUS_CODING Usp7	TF binding site mE1_TFBS_cad
2R	5168365	2R_5168365_SNP [dm3] 2R_9280860_SNP [dm6]	A	G	3.983e^-4	0.83	INTRON Pkn
2L	3996976	2L_3996976_SNP [dm3] 2L_3996976_SNP [dm6]	C	T	3.988e^-4	0.83	INTERGENIC
X	20325941	X_20325941_SNP [dm3] X_20454914_SNP [dm6]	T	A	3.989e^-4	0.83	INTRON CG32506
2R	6505833	2R_6505833_SNP [dm3] 2R_10618328_SNP [dm6]	C	T	3.996e^-4	0.83	INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12340547	2L_12340547_SNP [dm3] 2L_12340547_SNP [dm6]	T	G	4.011e^-4	0.83	INTERGENIC
2R	13836487	2R_13836487_SNP [dm3] 2R_17948982_SNP [dm6]	G	T	4.014e^-4	0.83	INTERGENIC
2R	18265850	2R_18265850_SNP [dm3] 2R_22378345_SNP [dm6]	T	C	4.030e^-4	0.83	UTR_3_PRIME Rtf1 DOWNSTREAM Rtf1 EXON CR45327
3L	10137509	3L_10137509_SNP [dm3] 3L_10144409_SNP [dm6]	C	A	4.031e^-4	0.83	INTERGENIC
2R	4952299	2R_4952299_SNP [dm3] 2R_9064794_SNP [dm6]	G	C	4.032e^-4	0.83	INTRON ana	regulatory region REDfly_CRMs
3R	14282506	3R_14282506_SNP [dm3] 3R_18456784_SNP [dm6]	T	A	4.053e^-4	0.83	INTRON fru
2R	891879	2R_891879_SNP [dm3] 2R_5004374_SNP [dm6]	A	C	4.054e^-4	0.83	INTRON Ir41a	transposable element FlyBase
2L	13063095	2L_13063095_SNP [dm3] 2L_13063095_SNP [dm6]	G	A	4.059e^-4	0.83	INTERGENIC
3R	3651771	3R_3651771_SNP [dm3] 3R_7826049_SNP [dm6]	T	C	4.060e^-4	0.83	INTRON CG34384
3R	12060579	3R_12060579_SNP [dm3] 3R_16234857_SNP [dm6]	C	T	4.061e^-4	0.83	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18267378	2R_18267378_SNP [dm3] 2R_22379873_SNP [dm6]	G	A	4.061e^-4	0.83	SYNONYMOUS_CODING wrapper UPSTREAM CR45327
2L	5572792	2L_5572792_SNP [dm3] 2L_5572792_SNP [dm6]	A	C	4.065e^-4	0.83	INTERGENIC
3L	4638275	3L_4638275_SNP [dm3] 3L_4638275_SNP [dm6]	A	G	4.066e^-4	0.83	INTRON axo
2L	16588102	2L_16588102_SNP [dm3] 2L_16588102_SNP [dm6]	A	G	4.066e^-4	0.83	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	17072267	X_17072267_SNP [dm3] X_17178234_SNP [dm6]	G	A	4.068e^-4	0.83	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12405796	3L_12405796_SNP [dm3] 3L_12412696_SNP [dm6]	A	G	4.073e^-4	0.83	INTRON CG32103
3R	25768158	3R_25768158_SNP [dm3] 3R_29942436_SNP [dm6]	A	G	4.073e^-4	0.83	SYNONYMOUS_CODING CG15523
2L	7814585	2L_7814585_SNP [dm3] 2L_7814585_SNP [dm6]	T	A	4.077e^-4	0.83	UTR_5_PRIME LanB1
3L	13959734	3L_13959734_SNP [dm3] 3L_13966634_SNP [dm6]	C	T	4.079e^-4	0.83	START_GAINED Nxf3 UTR_5_PRIME Nxf3 INTRON ssp2
3R	15490220	3R_15490220_SNP [dm3] 3R_19664498_SNP [dm6]	T	C	4.082e^-4	0.83	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
3R	13317693	3R_13317693_SNP [dm3] 3R_17491971_SNP [dm6]	T	C	4.084e^-4	0.83	INTRON Dscam3
2L	13667302	2L_13667302_SNP [dm3] 2L_13667302_SNP [dm6]	T	C	4.089e^-4	0.83	INTRON CG18507
3R	15490205	3R_15490205_SNP [dm3] 3R_19664483_SNP [dm6]	C	T	4.089e^-4	0.83	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
3L	12988012	3L_12988012_SNP [dm3] 3L_12994912_SNP [dm6]	T	C	4.095e^-4	0.83	UPSTREAM CG11262 INTERGENIC
X	6524540	X_6524540_SNP [dm3] X_6630507_SNP [dm6]	A	G	4.102e^-4	0.83	INTRON pigs
3R	26052531	3R_26052531_SNP [dm3] 3R_30226809_SNP [dm6]	G	T	4.106e^-4	0.83	INTERGENIC
3R	25758907	3R_25758907_SNP [dm3] 3R_29933185_SNP [dm6]	G	A	4.108e^-4	0.83	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6547465	3R_6547465_SNP [dm3] 3R_10721743_SNP [dm6]	T	C	4.115e^-4	0.831	INTERGENIC
3R	3971835	3R_3971835_SNP [dm3] 3R_8146113_SNP [dm6]	C	G	4.128e^-4	0.832	INTERGENIC
2L	12148505	2L_12148505_DEL [dm3] 2L_12148505_DEL [dm6]	TG	T	4.131e^-4	0.832	INTRON CG31760
X	17256646	X_17256646_SNP [dm3] X_17362613_SNP [dm6]	A	G	4.136e^-4	0.832	INTERGENIC
2L	7089521	2L_7089521_SNP [dm3] 2L_7089521_SNP [dm6]	T	C	4.140e^-4	0.832	INTERGENIC
3L	989656	3L_989656_SNP [dm3] 3L_989656_SNP [dm6]	A	G	4.144e^-4	0.832	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20996766	3R_20996766_SNP [dm3] 3R_25171044_SNP [dm6]	T	C	4.153e^-4	0.832	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8148341	3L_8148341_SNP [dm3] 3L_8155241_SNP [dm6]	T	C	4.154e^-4	0.832	UTR_5_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15144416	2L_15144416_SNP [dm3] 2L_15144416_SNP [dm6]	T	C	4.165e^-4	0.834	INTERGENIC
3R	14676428	3R_14676428_SNP [dm3] 3R_18850706_SNP [dm6]	G	T	4.179e^-4	0.834	DOWNSTREAM CR45633 & 1 other INTERGENIC
3R	3504232	3R_3504232_SNP [dm3] 3R_7678510_SNP [dm6]	G	A	4.179e^-4	0.834	INTRON Nlg1
3R	24653323	3R_24653323_SNP [dm3] 3R_28827601_SNP [dm6]	C	A	4.184e^-4	0.834	UPSTREAM WASp INTRON WASp
2R	18378457	2R_18378457_SNP [dm3] 2R_22490952_SNP [dm6]	A	G	4.190e^-4	0.834	NON_SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
X	10493969	X_10493969_SNP [dm3] X_10599936_SNP [dm6]	C	T	4.193e^-4	0.834	DOWNSTREAM CG2124 INTRON CG1628
2L	16755044	2L_16755044_SNP [dm3] 2L_16755044_SNP [dm6]	G	C	4.195e^-4	0.834	INTRON yellow-b
2R	18055331	2R_18055331_SNP [dm3] 2R_22167826_SNP [dm6]	C	T	4.196e^-4	0.834	INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10322270	3R_10322270_SNP [dm3] 3R_14496548_SNP [dm6]	G	C	4.222e^-4	0.834	INTRON CR44177
3R	7372850	3R_7372850_SNP [dm3] 3R_11547128_SNP [dm6]	A	G	4.225e^-4	0.834	INTERGENIC
2L	3457209	2L_3457209_SNP [dm3] 2L_3457209_SNP [dm6]	C	A	4.225e^-4	0.834	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	79624	2L_79624_SNP [dm3] 2L_79624_SNP [dm6]	G	A	4.227e^-4	0.834	INTERGENIC
2R	4951152	2R_4951152_SNP [dm3] 2R_9063647_SNP [dm6]	T	G	4.229e^-4	0.834	INTRON ana	regulatory region REDfly_CRMs
2L	12819656	2L_12819656_SNP [dm3] 2L_12819656_SNP [dm6]	T	A	4.233e^-4	0.834	NON_SYNONYMOUS_CODING kek1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18024313	3L_18024313_SNP [dm3] 3L_18031213_SNP [dm6]	T	G	4.234e^-4	0.834	INTRON Eip75B
2R	2049812	2R_2049812_SNP [dm3] 2R_6162307_SNP [dm6]	A	T	4.238e^-4	0.834	UPSTREAM tRNA:N5:42Aa & 1 other DOWNSTREAM tRNA:R2:42Ac & 2 others INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25753755	3R_25753755_SNP [dm3] 3R_29928033_SNP [dm6]	C	T	4.239e^-4	0.834	SYNONYMOUS_CODING CG15522 DOWNSTREAM CG31202	TF binding site mE1_TFBS_chinmo
2R	11934819	2R_11934819_SNP [dm3] 2R_16047314_SNP [dm6]	C	G	4.244e^-4	0.834	UPSTREAM CG8405 DOWNSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	964307	2R_964307_SNP [dm3] 2R_5076802_SNP [dm6]	G	A	4.248e^-4	0.834	INTERGENIC	transposable element FlyBase
X	4232116	X_4232116_SNP [dm3] X_4338083_SNP [dm6]	G	C	4.250e^-4	0.834	INTRON norpA	TF binding site mE1_TFBS_inv
2R	8555043	2R_8555043_SNP [dm3] 2R_12667538_SNP [dm6]	C	A	4.265e^-4	0.836	INTRON nemy
3L	8135693	3L_8135693_SNP [dm3] 3L_8142593_SNP [dm6]	T	C	4.271e^-4	0.836	DOWNSTREAM mus301 INTRON CG13676	TF binding site mE1_TFBS_cad
2R	15330353	2R_15330353_SNP [dm3] 2R_19442848_SNP [dm6]	C	T	4.277e^-4	0.836	SYNONYMOUS_CODING RpL11 UPSTREAM snoRNA:Psi28S-2444 DOWNSTREAM Spt5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23890299	3R_23890299_SNP [dm3] 3R_28064577_SNP [dm6]	T	C	4.286e^-4	0.837	INTRON CG34362
2L	18910842	2L_18910842_SNP [dm3] 2L_18910842_SNP [dm6]	C	T	4.295e^-4	0.838	INTERGENIC
3R	18839607	3R_18839607_INS [dm3] 3R_23013885_INS [dm6]	T	TT	4.297e^-4	0.838	INTRON CG6688	TF binding site mE1_TFBS_zfh1
X	17255699	X_17255699_SNP [dm3] X_17361666_SNP [dm6]	T	G	4.305e^-4	0.838	INTERGENIC
3R	16749603	3R_16749603_SNP [dm3] 3R_20923881_SNP [dm6]	T	C	4.314e^-4	0.839	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2L	7525341	2L_7525341_SNP [dm3] 2L_7525341_SNP [dm6]	G	A	4.328e^-4	0.84	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5187470	2R_5187470_SNP [dm3] 2R_9299965_SNP [dm6]	T	C	4.328e^-4	0.84	UTR_3_PRIME Drep-2 DOWNSTREAM Drep-2
2R	8844223	2R_8844223_SNP [dm3] 2R_12956718_SNP [dm6]	T	A	4.334e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	24477125	3R_24477125_SNP [dm3] 3R_28651403_SNP [dm6]	A	C	4.338e^-4	0.84	UPSTREAM CG31050 INTERGENIC
2R	16816324	2R_16816324_SNP [dm3] 2R_20928819_SNP [dm6]	A	T	4.364e^-4	0.845	INTRON Rx
2R	13121702	2R_13121702_SNP [dm3] 2R_17234197_SNP [dm6]	T	G	4.378e^-4	0.846	INTRON mbl
3L	4566163	3L_4566163_SNP [dm3] 3L_4566163_SNP [dm6]	T	C	4.382e^-4	0.846	INTRON CG42540
X	18145365	X_18145365_SNP [dm3] X_18251332_SNP [dm6]	T	A	4.385e^-4	0.846	INTERGENIC
3L	7711967	3L_7711967_SNP [dm3] 3L_7718867_SNP [dm6]	A	T	4.398e^-4	0.846	UPSTREAM CG12262 & 1 other INTRON CG32373
3R	26472456	3R_26472456_SNP [dm3] 3R_30646734_SNP [dm6]	T	G	4.401e^-4	0.846	UPSTREAM CG31013 INTRON PH4alphaPV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25757091	3R_25757091_SNP [dm3] 3R_29931369_SNP [dm6]	A	G	4.402e^-4	0.846	NON_SYNONYMOUS_CODING Cog7 UPSTREAM CG31202	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3779323	2R_3779323_INS [dm3] 2R_7891818_INS [dm6]	G	GAATGAACGTCTGCG...	4.404e^-4	0.846	INTRON CG30377
3R	25777788	3R_25777788_SNP [dm3] 3R_29952066_SNP [dm6]	G	T	4.409e^-4	0.846	INTRON TkR99D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5068388	X_5068388_INS [dm3] X_5174355_INS [dm6]	T	TT	4.416e^-4	0.847	INTRON rg & 1 other
2R	918211	2R_918211_SNP [dm3] 2R_5030706_SNP [dm6]	G	A	4.438e^-4	0.848	INTERGENIC
3R	24581286	3R_24581286_DEL [dm3] 3R_28755564_DEL [dm6]	ATTATTATTA	A	4.439e^-4	0.848	UTR_3_PRIME CG9997 DOWNSTREAM CG9997
2R	8942582	2R_8942582_SNP [dm3] 2R_13055077_SNP [dm6]	A	T	4.444e^-4	0.848	DOWNSTREAM Drl-2 INTERGENIC
2R	11932855	2R_11932855_SNP [dm3] 2R_16045350_SNP [dm6]	T	C	4.445e^-4	0.848	SYNONYMOUS_CODING SP2353
2R	3773240	2R_3773240_SNP [dm3] 2R_7885735_SNP [dm6]	A	C	4.446e^-4	0.848	UTR_5_PRIME Dgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10969036	3L_10969036_SNP [dm3] 3L_10975936_SNP [dm6]	C	T	4.456e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10560901	3L_10560901_SNP [dm3] 3L_10567801_SNP [dm6]	A	G	4.467e^-4	0.849	INTRON A2bp1
2R	10337351	2R_10337351_SNP [dm3] 2R_14449846_SNP [dm6]	C	T	4.474e^-4	0.849	INTRON Oaz
3R	3504231	3R_3504231_SNP [dm3] 3R_7678509_SNP [dm6]	G	A	4.475e^-4	0.849	INTRON Nlg1
2L	3217892	2L_3217892_SNP [dm3] 2L_3217892_SNP [dm6]	C	T	4.483e^-4	0.849	INTERGENIC
2L	21730760	2L_21730760_SNP [dm3] 2L_21730760_SNP [dm6]	G	C	4.484e^-4	0.849	INTERGENIC	transposable element FlyBase
3L	11844995	3L_11844995_SNP [dm3] 3L_11851895_SNP [dm6]	C	T	4.485e^-4	0.849	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_chinmo
3L	13958444	3L_13958444_SNP [dm3] 3L_13965344_SNP [dm6]	A	T	4.492e^-4	0.849	UTR_5_PRIME ssp2 & 1 other UPSTREAM Meics	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	17971754	3R_17971754_SNP [dm3] 3R_22146032_SNP [dm6]	C	A	4.492e^-4	0.849	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20865888	3R_20865888_DEL [dm3] 3R_25040166_DEL [dm6]	AA	A	4.513e^-4	0.85	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	18925361	2L_18925361_SNP [dm3] 2L_18925361_SNP [dm6]	C	G	4.518e^-4	0.85	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15618926	3L_15618926_SNP [dm3] 3L_15625826_SNP [dm6]	G	T	4.520e^-4	0.85	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26617225	3R_26617225_SNP [dm3] 3R_30791503_SNP [dm6]	G	A	4.525e^-4	0.85	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
3R	21738610	3R_21738610_SNP [dm3] 3R_25912888_SNP [dm6]	C	A	4.526e^-4	0.85	UTR_3_PRIME CG42235 INTRON CG42235
2R	17723599	2R_17723599_SNP [dm3] 2R_21836094_SNP [dm6]	T	C	4.531e^-4	0.85	INTRON CG4377
2L	14401327	2L_14401327_SNP [dm3] 2L_14401327_SNP [dm6]	G	A	4.534e^-4	0.85	INTRON elB
2L	14401329	2L_14401329_SNP [dm3] 2L_14401329_SNP [dm6]	T	C	4.534e^-4	0.85	INTRON elB

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.243e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1916 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10230278	2L_10230278_SNP [dm3] 2L_10230278_SNP [dm6]	A	T	2.074e^-6	0.775	INTRON CG5694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	11663994	3R_11663994_SNP [dm3] 3R_15838272_SNP [dm6]	C	A	2.447e^-6	0.775	UTR_3_PRIME Pbp45 INTRON spn-E	TF binding site mE1_TFBS_cad
3R	12747734	3R_12747734_SNP [dm3] 3R_16922012_SNP [dm6]	C	T	4.357e^-6	0.775	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12465362	2R_12465362_SNP [dm3] 2R_16577857_SNP [dm6]	G	C	5.090e^-6	0.775	INTERGENIC
2L	9172842	2L_9172842_SNP [dm3] 2L_9172842_SNP [dm6]	A	G	5.103e^-6	0.775	INTRON tai
3L	10916325	3L_10916325_SNP [dm3] 3L_10923225_SNP [dm6]	A	G	6.021e^-6	0.775	INTERGENIC
2R	7422720	2R_7422720_SNP [dm3] 2R_11535215_SNP [dm6]	G	A	6.351e^-6	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14648178	2R_14648178_SNP [dm3] 2R_18760673_SNP [dm6]	T	G	6.767e^-6	0.775	UPSTREAM Jabba INTRON Jabba
3R	23005564	3R_23005564_SNP [dm3] 3R_27179842_SNP [dm6]	T	C	6.839e^-6	0.775	INTRON Ser
3R	15759517	3R_15759517_SNP [dm3] 3R_19933795_SNP [dm6]	G	A	7.260e^-6	0.775	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11803634	2R_11803634_SNP [dm3] 2R_15916129_SNP [dm6]	T	C	8.272e^-6	0.775	INTRON sli EXON CR44373
3R	20845421	3R_20845421_SNP [dm3] 3R_25019699_SNP [dm6]	A	C	9.048e^-6	0.775	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
2R	8467202	2R_8467202_SNP [dm3] 2R_12579697_SNP [dm6]	C	T	1.025e^-5	0.775	INTRON Sin3A
2L	9172835	2L_9172835_SNP [dm3] 2L_9172835_SNP [dm6]	T	C	1.117e^-5	0.775	INTRON tai
X	14736675	X_14736675_INS [dm3] X_14842642_INS [dm6]	T	TT	1.118e^-5	0.775	UTR_3_PRIME CG12539 INTRON Flo2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12469244	2R_12469244_INS [dm3] 2R_16581739_INS [dm6]	T	TTAATAACTCAAT...	1.129e^-5	0.775	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	7423553	2R_7423553_SNP [dm3] 2R_11536048_SNP [dm6]	G	A	1.160e^-5	0.775	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10232279	2L_10232279_DEL [dm3] 2L_10232279_DEL [dm6]	TT	T	1.206e^-5	0.775	UPSTREAM eEF1delta & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9173157	2L_9173157_SNP [dm3] 2L_9173157_SNP [dm6]	A	T	1.209e^-5	0.775	INTRON tai
2R	12469243	2R_12469243_SNP [dm3] 2R_16581738_SNP [dm6]	C	A	1.241e^-5	0.775	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6186881	2R_6186881_SNP [dm3] 2R_10299376_SNP [dm6]	C	T	1.294e^-5	0.775	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12469351	2R_12469351_SNP [dm3] 2R_16581846_SNP [dm6]	G	T	1.310e^-5	0.775	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3915754	3L_3915754_SNP [dm3] 3L_3915754_SNP [dm6]	G	C	1.373e^-5	0.775	INTRON Eip63F-1
3R	6071968	3R_6071968_SNP [dm3] 3R_10246246_SNP [dm6]	A	G	1.398e^-5	0.775	SYNONYMOUS_CODING CG42795
2R	8514729	2R_8514729_SNP [dm3] 2R_12627224_SNP [dm6]	T	A	1.494e^-5	0.775	INTRON CG17760
2R	6531497	2R_6531497_SNP [dm3] 2R_10643992_SNP [dm6]	C	T	1.577e^-5	0.775	INTRON Git	TF binding site mE1_TFBS_HSA
3L	3915767	3L_3915767_SNP [dm3] 3L_3915767_SNP [dm6]	G	C	1.630e^-5	0.775	INTRON Eip63F-1
2R	7423666	2R_7423666_SNP [dm3] 2R_11536161_SNP [dm6]	C	T	1.655e^-5	0.775	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6787115	2L_6787115_DEL [dm3] 2L_6787115_DEL [dm6]	ATGTA	A	1.736e^-5	0.775	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20502190	3R_20502190_SNP [dm3] 3R_24676468_SNP [dm6]	C	A	1.768e^-5	0.775	INTRON slo
2R	12469352	2R_12469352_SNP [dm3] 2R_16581847_SNP [dm6]	C	T	1.817e^-5	0.775	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14642089	2L_14642089_SNP [dm3] 2L_14642089_SNP [dm6]	T	C	1.833e^-5	0.775	INTRON osp
2L	8953645	2L_8953645_SNP [dm3] 2L_8953645_SNP [dm6]	A	G	1.842e^-5	0.775	UTR_3_PRIME CG31886
2R	6531483	2R_6531483_SNP [dm3] 2R_10643978_SNP [dm6]	G	A	1.861e^-5	0.775	INTRON Git	TF binding site mE1_TFBS_HSA
2R	21095945	2R_21095945_DEL [dm3] 2R_25208422_DEL [dm6]	GTAGAGGCTGAATG...	G	1.949e^-5	0.775	INTRON CG9380
3R	23087671	3R_23087671_INS [dm3] 3R_27261949_INS [dm6]	A	AG	2.018e^-5	0.775	SPLICE_SITE_REGION woc DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22548822	3L_22548822_SNP [dm3] 3L_22555722_SNP [dm6]	G	A	2.119e^-5	0.775	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8953750	2L_8953750_DEL [dm3] 2L_8953750_DEL [dm6]	ACTATTTTCCCAT...	A	2.136e^-5	0.775	UTR_3_PRIME CG31886
3R	11696581	3R_11696581_SNP [dm3] 3R_15870859_SNP [dm6]	C	T	2.138e^-5	0.775	INTRON CG31183
2R	14706910	2R_14706910_SNP [dm3] 2R_18819405_SNP [dm6]	A	G	2.140e^-5	0.775	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15759262	3R_15759262_SNP [dm3] 3R_19933540_SNP [dm6]	G	C	2.193e^-5	0.775	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6531275	2R_6531275_SNP [dm3] 2R_10643770_SNP [dm6]	C	T	2.261e^-5	0.775	INTRON Git	TF binding site mE1_TFBS_HSA
3L	9604660	3L_9604660_SNP [dm3] 3L_9611560_SNP [dm6]	C	T	2.292e^-5	0.775	SPLICE_SITE_REGION CG3280 SYNONYMOUS_CODING CG3280
2L	12319414	2L_12319414_SNP [dm3] 2L_12319414_SNP [dm6]	T	C	2.310e^-5	0.775	INTERGENIC
2R	12469373	2R_12469373_SNP [dm3] 2R_16581868_SNP [dm6]	A	G	2.347e^-5	0.775	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	23329796	3L_23329796_INS [dm3] 3L_23336696_INS [dm6]	A	ATATCA	2.385e^-5	0.775	INTRON alpha-Cat
2L	3986494	2L_3986494_SNP [dm3] 2L_3986494_SNP [dm6]	T	G	2.398e^-5	0.775	INTRON fred
3R	17841499	3R_17841499_SNP [dm3] 3R_22015777_SNP [dm6]	C	T	2.401e^-5	0.775	DOWNSTREAM CG6439 INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14648202	2R_14648202_SNP [dm3] 2R_18760697_SNP [dm6]	G	T	2.450e^-5	0.775	UPSTREAM Jabba INTRON Jabba
3R	14924176	3R_14924176_SNP [dm3] 3R_19098454_SNP [dm6]	G	A	2.464e^-5	0.775	INTRON CG6040
3L	18311301	3L_18311301_SNP [dm3] 3L_18318201_SNP [dm6]	T	C	2.520e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21071109	2R_21071109_SNP [dm3] 2R_25183586_SNP [dm6]	A	T	2.609e^-5	0.775	DOWNSTREAM CG9380 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10369639	2L_10369639_SNP [dm3] 2L_10369639_SNP [dm6]	G	A	2.705e^-5	0.775	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10462389	3L_10462389_SNP [dm3] 3L_10469289_SNP [dm6]	G	A	2.706e^-5	0.775	DOWNSTREAM S-Lap3 INTERGENIC
3R	22721154	3R_22721154_SNP [dm3] 3R_26895432_SNP [dm6]	A	G	2.710e^-5	0.775	INTRON T48	regulatory region REDfly_CRMs
2R	20265366	2R_20265366_SNP [dm3] 2R_24377843_SNP [dm6]	A	G	2.766e^-5	0.775	UTR_5_PRIME CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	173340	2L_173340_SNP [dm3] 2L_173340_SNP [dm6]	C	T	2.778e^-5	0.775	INTRON spen	TF binding site BDTNP1_TFBS_da
3L	4343529	3L_4343529_SNP [dm3] 3L_4343529_SNP [dm6]	A	G	2.803e^-5	0.775	INTRON Cip4
2R	8467210	2R_8467210_SNP [dm3] 2R_12579705_SNP [dm6]	A	G	2.821e^-5	0.775	INTRON Sin3A
3L	11343270	3L_11343270_SNP [dm3] 3L_11350170_SNP [dm6]	T	C	2.834e^-5	0.775	UPSTREAM CR45251 INTERGENIC
3L	18311304	3L_18311304_SNP [dm3] 3L_18318204_SNP [dm6]	A	G	2.834e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19391821	2L_19391821_SNP [dm3] 2L_19391821_SNP [dm6]	A	G	2.886e^-5	0.775	INTRON CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15336568	3L_15336568_SNP [dm3] 3L_15343468_SNP [dm6]	A	G	2.965e^-5	0.775	UTR_3_PRIME Toll-6
3R	27213306	3R_27213306_SNP [dm3] 3R_31387584_SNP [dm6]	C	T	2.995e^-5	0.775	INTRON CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	18311298	3L_18311298_SNP [dm3] 3L_18318198_SNP [dm6]	T	C	3.010e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18311300	3L_18311300_SNP [dm3] 3L_18318200_SNP [dm6]	T	C	3.010e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3915785	3L_3915785_SNP [dm3] 3L_3915785_SNP [dm6]	C	A	3.018e^-5	0.775	INTRON Eip63F-1
3L	18311305	3L_18311305_SNP [dm3] 3L_18318205_SNP [dm6]	A	C	3.031e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18611262	2R_18611262_SNP [dm3] 2R_22723757_SNP [dm6]	G	A	3.047e^-5	0.775	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18608372	2R_18608372_SNP [dm3] 2R_22720867_SNP [dm6]	G	A	3.048e^-5	0.775	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	3.093e^-5	0.775	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12260853	2L_12260853_SNP [dm3] 2L_12260853_SNP [dm6]	A	T	3.100e^-5	0.775	INTRON aret
3R	26095206	3R_26095206_SNP [dm3] 3R_30269484_SNP [dm6]	C	A	3.117e^-5	0.775	INTERGENIC
2R	8467937	2R_8467937_SNP [dm3] 2R_12580432_SNP [dm6]	A	G	3.159e^-5	0.775	NON_SYNONYMOUS_CODING Sin3A
3R	15759541	3R_15759541_SNP [dm3] 3R_19933819_SNP [dm6]	A	G	3.229e^-5	0.775	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20502204	3R_20502204_SNP [dm3] 3R_24676482_SNP [dm6]	C	T	3.241e^-5	0.775	INTRON slo
3L	12535056	3L_12535056_SNP [dm3] 3L_12541956_SNP [dm6]	A	G	3.451e^-5	0.775	UPSTREAM CR43612 INTRON sowah EXON CR43612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12469306	2R_12469306_SNP [dm3] 2R_16581801_SNP [dm6]	T	A	3.480e^-5	0.775	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	836731	2R_836731_SNP [dm3] 2R_4949226_SNP [dm6]	T	C	3.505e^-5	0.775	INTRON Ir41a	transposable element FlyBase
2R	21023997	2R_21023997_SNP [dm3] 2R_25136474_SNP [dm6]	C	T	3.532e^-5	0.775	INTRON lov	TF binding site BDTNP1_TFBS_twi
X	9129670	X_9129670_SNP [dm3] X_9235637_SNP [dm6]	A	G	3.590e^-5	0.775	DOWNSTREAM mir-4916 INTRON Ir8a
2L	21731151	2L_21731151_SNP [dm3] 2L_21731151_SNP [dm6]	T	G	3.590e^-5	0.775	INTERGENIC	transposable element FlyBase
2L	22359180	2L_22359180_SNP [dm3] 2L_22359180_SNP [dm6]	A	T	3.591e^-5	0.775	INTRON CG17018	transposable element FlyBase
3R	14390462	3R_14390462_SNP [dm3] 3R_18564740_SNP [dm6]	A	T	3.607e^-5	0.775	UTR_5_PRIME CG43210 UTR_3_PRIME CG43194
2R	8467572	2R_8467572_SNP [dm3] 2R_12580067_SNP [dm6]	A	G	3.692e^-5	0.775	INTRON Sin3A
2R	7421730	2R_7421730_SNP [dm3] 2R_11534225_SNP [dm6]	C	A	3.732e^-5	0.775	INTERGENIC
X	7215043	X_7215043_DEL [dm3] X_7321010_DEL [dm6]	CG	C	3.787e^-5	0.775	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3915751	3L_3915751_SNP [dm3] 3L_3915751_SNP [dm6]	A	T	3.814e^-5	0.775	INTRON Eip63F-1
3L	3915759	3L_3915759_DEL [dm3] 3L_3915759_DEL [dm6]	AA	A	3.814e^-5	0.775	INTRON Eip63F-1
3R	21667915	3R_21667915_SNP [dm3] 3R_25842193_SNP [dm6]	G	A	3.815e^-5	0.775	SYNONYMOUS_CODING alpha4GT2
3R	24756600	3R_24756600_SNP [dm3] 3R_28930878_SNP [dm6]	C	A	3.868e^-5	0.775	INTRON CG14521
X	9869946	X_9869946_DEL [dm3] X_9975913_DEL [dm6]	AAAGG	A	3.871e^-5	0.775	INTRON CG43386
X	7215046	X_7215046_DEL [dm3] X_7321013_DEL [dm6]	CATCT	C	3.921e^-5	0.775	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10916332	3L_10916332_SNP [dm3] 3L_10923232_SNP [dm6]	A	C	3.924e^-5	0.775	INTERGENIC
X	20326491	X_20326491_INS [dm3] X_20455464_INS [dm6]	T	TT	3.941e^-5	0.775	INTRON CG32506
3L	10364908	3L_10364908_DEL [dm3] 3L_10371808_DEL [dm6]	GC	G	4.007e^-5	0.775	INTERGENIC
3L	4343582	3L_4343582_SNP [dm3] 3L_4343582_SNP [dm6]	C	A	4.010e^-5	0.775	INTRON Cip4
2L	14642103	2L_14642103_INS [dm3] 2L_14642103_INS [dm6]	T	TAT	4.062e^-5	0.777	INTRON osp
2L	12260866	2L_12260866_SNP [dm3] 2L_12260866_SNP [dm6]	T	A	4.266e^-5	0.782	INTRON aret
X	9869952	X_9869952_DEL [dm3] X_9975919_DEL [dm6]	TGCATTGTTTAACGGCC...	T	4.307e^-5	0.782	INTRON CG43386
2L	9173121	2L_9173121_SNP [dm3] 2L_9173121_SNP [dm6]	C	G	4.325e^-5	0.782	INTRON tai
2L	12260801	2L_12260801_DEL [dm3] 2L_12260801_DEL [dm6]	ACTTTCCA	A	4.332e^-5	0.782	INTRON aret
2L	12443130	2L_12443130_SNP [dm3] 2L_12443130_SNP [dm6]	G	A	4.335e^-5	0.782	SYNONYMOUS_CODING Oatp33Ea
3R	10543397	3R_10543397_SNP [dm3] 3R_14717675_SNP [dm6]	A	G	4.338e^-5	0.782	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3239513	2L_3239513_SNP [dm3] 2L_3239513_SNP [dm6]	T	A	4.465e^-5	0.794	INTERGENIC
3R	4081475	3R_4081475_SNP [dm3] 3R_8255753_SNP [dm6]	T	A	4.490e^-5	0.794	INTRON mtg
3L	18300313	3L_18300313_DEL [dm3] 3L_18307213_DEL [dm6]	ACTGTGA	C	4.593e^-5	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18300345	3L_18300345_SNP [dm3] 3L_18307245_SNP [dm6]	A	G	4.593e^-5	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15759274	3R_15759274_SNP [dm3] 3R_19933552_SNP [dm6]	T	C	4.679e^-5	0.805	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3915758	3L_3915758_SNP [dm3] 3L_3915758_SNP [dm6]	A	T	4.745e^-5	0.809	INTRON Eip63F-1
2R	21023075	2R_21023075_SNP [dm3] 2R_25135552_SNP [dm6]	G	C	4.841e^-5	0.812	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9530291	2R_9530291_SNP [dm3] 2R_13642786_SNP [dm6]	G	C	4.847e^-5	0.812	INTRON fas
2R	6276630	2R_6276630_SNP [dm3] 2R_10389125_SNP [dm6]	C	A	4.929e^-5	0.816	INTRON CG42732
2L	10230182	2L_10230182_SNP [dm3] 2L_10230182_SNP [dm6]	C	T	4.984e^-5	0.816	INTRON CG5694	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3969818	3L_3969818_SNP [dm3] 3L_3969818_SNP [dm6]	C	G	5.001e^-5	0.816	INTERGENIC
2L	6786230	2L_6786230_SNP [dm3] 2L_6786230_SNP [dm6]	G	A	5.085e^-5	0.818	INTRON nrv1	TF binding site mE1_TFBS_Trl
3R	11661518	3R_11661518_DEL [dm3] 3R_15835796_DEL [dm6]	TAT	T	5.103e^-5	0.818	UTR_3_PRIME Arpc3A DOWNSTREAM ND23 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	9258825	3L_9258825_SNP [dm3] 3L_9265725_SNP [dm6]	C	A	5.171e^-5	0.822	INTRON GluRIB
2L	12319379	2L_12319379_SNP [dm3] 2L_12319379_SNP [dm6]	A	G	5.275e^-5	0.824	INTERGENIC
2R	8474016	2R_8474016_SNP [dm3] 2R_12586511_SNP [dm6]	A	G	5.306e^-5	0.824	INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16487104	3R_16487104_SNP [dm3] 3R_20661382_SNP [dm6]	T	C	5.437e^-5	0.824	INTERGENIC
3R	24537215	3R_24537215_SNP [dm3] 3R_28711493_SNP [dm6]	A	C	5.474e^-5	0.824	INTRON htt
3R	11697071	3R_11697071_SNP [dm3] 3R_15871349_SNP [dm6]	A	G	5.475e^-5	0.824	INTRON CG31183
2R	18200481	2R_18200481_SNP [dm3] 2R_22312976_SNP [dm6]	G	A	5.511e^-5	0.824	INTRON CR44758
2R	20323826	2R_20323826_SNP [dm3] 2R_24436303_SNP [dm6]	T	C	5.555e^-5	0.824	INTERGENIC
X	20364022	X_20364022_SNP [dm3] X_20492995_SNP [dm6]	T	C	5.572e^-5	0.824	INTRON RhoGAP19D
3L	15708693	3L_15708693_SNP [dm3] 3L_15715593_SNP [dm6]	C	T	5.736e^-5	0.824	UPSTREAM CG42571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6787016	2L_6787016_SNP [dm3] 2L_6787016_SNP [dm6]	T	G	5.767e^-5	0.824	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18301786	3L_18301786_SNP [dm3] 3L_18308686_SNP [dm6]	C	A	5.867e^-5	0.824	INTERGENIC
2L	9173126	2L_9173126_DEL [dm3] 2L_9173126_DEL [dm6]	ATGCACTTTTACTCCACAAA...	A	5.887e^-5	0.824	INTRON tai
2R	15767630	2R_15767630_SNP [dm3] 2R_19880125_SNP [dm6]	A	T	5.968e^-5	0.824	SYNONYMOUS_CODING CG13872	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13288325	2L_13288325_SNP [dm3] 2L_13288325_SNP [dm6]	A	T	5.975e^-5	0.824	SYNONYMOUS_CODING Uvrag EXON CR44972
2R	2048529	2R_2048529_DEL [dm3] 2R_6161024_DEL [dm6]	TGGATACT	T	6.044e^-5	0.824	UPSTREAM tRNA:R2:42Ac DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	2356165	3L_2356165_SNP [dm3] 3L_2356165_SNP [dm6]	G	T	6.053e^-5	0.824	INTERGENIC
3R	25238115	3R_25238115_SNP [dm3] 3R_29412393_SNP [dm6]	T	G	6.300e^-5	0.824	INTRON Ptp99A
2R	19527061	2R_19527061_SNP [dm3] 2R_23639538_SNP [dm6]	C	T	6.338e^-5	0.824	UPSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	4631645	3L_4631645_SNP [dm3] 3L_4631645_SNP [dm6]	A	C	6.384e^-5	0.824	INTRON axo	insulator Insulator_Class_II.mE01
2R	15144609	2R_15144609_SNP [dm3] 2R_19257104_SNP [dm6]	G	A	6.408e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	20844011	3R_20844011_SNP [dm3] 3R_25018289_SNP [dm6]	A	T	6.476e^-5	0.824	NON_SYNONYMOUS_CODING tnc
3L	12455832	3L_12455832_INS [dm3] 3L_12462732_INS [dm6]	T	TTT	6.539e^-5	0.824	UTR_3_PRIME eyg DOWNSTREAM eyg
3R	24756601	3R_24756601_SNP [dm3] 3R_28930879_SNP [dm6]	A	T	6.590e^-5	0.824	INTRON CG14521
2R	20265446	2R_20265446_SNP [dm3] 2R_24377923_SNP [dm6]	G	T	6.622e^-5	0.824	UTR_5_PRIME CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15097031	2L_15097031_SNP [dm3] 2L_15097031_SNP [dm6]	A	G	6.658e^-5	0.824	DOWNSTREAM CG15270 INTERGENIC
2R	9098825	2R_9098825_SNP [dm3] 2R_13211320_SNP [dm6]	G	T	6.678e^-5	0.824	UTR_5_PRIME CG34312 & 1 other UTR_3_PRIME CG34235 UPSTREAM CG34312 DOWNSTREAM FLASH
3R	10218389	3R_10218389_SNP [dm3] 3R_14392667_SNP [dm6]	C	A	6.688e^-5	0.824	UTR_3_PRIME cv-c
3R	5446224	3R_5446224_SNP [dm3] 3R_9620502_SNP [dm6]	A	C	6.730e^-5	0.824	INTRON CG8312
3R	24444663	3R_24444663_SNP [dm3] 3R_28618941_SNP [dm6]	G	A	6.769e^-5	0.824	INTRON CG10011
2L	12260870	2L_12260870_SNP [dm3] 2L_12260870_SNP [dm6]	T	G	6.825e^-5	0.824	INTRON aret
2R	12469286	2R_12469286_SNP [dm3] 2R_16581781_SNP [dm6]	T	C	6.827e^-5	0.824	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27213325	3R_27213325_SNP [dm3] 3R_31387603_SNP [dm6]	G	A	6.854e^-5	0.824	INTRON CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	10629038	2R_10629038_SNP [dm3] 2R_14741533_SNP [dm6]	G	A	6.889e^-5	0.824	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad
2R	803994	2R_803994_SNP [dm3] 2R_4916489_SNP [dm6]	G	T	6.910e^-5	0.824	INTERGENIC
2L	12260876	2L_12260876_DEL [dm3] 2L_12260876_DEL [dm6]	GCGCCA	G	6.923e^-5	0.824	INTRON aret
3L	22149731	3L_22149731_SNP [dm3] 3L_22156631_SNP [dm6]	C	T	6.959e^-5	0.824	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14642042	2L_14642042_SNP [dm3] 2L_14642042_SNP [dm6]	C	T	7.021e^-5	0.824	INTRON osp
2R	17936453	2R_17936453_SNP [dm3] 2R_22048948_SNP [dm6]	T	C	7.076e^-5	0.824	INTERGENIC
2L	8174528	2L_8174528_SNP [dm3] 2L_8174528_SNP [dm6]	T	C	7.095e^-5	0.824	SPLICE_SITE_REGION Piezo INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16500854	2L_16500854_SNP [dm3] 2L_16500854_SNP [dm6]	T	C	7.186e^-5	0.824	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12031558	2R_12031558_SNP [dm3] 2R_16144053_SNP [dm6]	C	G	7.343e^-5	0.824	SYNONYMOUS_CODING Aats-cys	TF binding site mE1_TFBS_sens
2L	15168184	2L_15168184_SNP [dm3] 2L_15168184_SNP [dm6]	T	G	7.403e^-5	0.824	INTRON CG4168
3R	25738503	3R_25738503_SNP [dm3] 3R_29912781_SNP [dm6]	G	A	7.415e^-5	0.824	SYNONYMOUS_STOP CG31036 DOWNSTREAM Capa
2R	13215103	2R_13215103_SNP [dm3] 2R_17327598_SNP [dm6]	C	T	7.447e^-5	0.824	INTRON mbl
2L	7115126	2L_7115126_SNP [dm3] 2L_7115126_SNP [dm6]	G	A	7.570e^-5	0.824	INTRON Pvf3
X	8933021	X_8933021_SNP [dm3] X_9038988_SNP [dm6]	T	C	7.572e^-5	0.824	UPSTREAM CG42388 INTRON CR43836 & 1 other
3R	24442409	3R_24442409_SNP [dm3] 3R_28616687_SNP [dm6]	G	A	7.614e^-5	0.824	INTRON CG10011
3R	11652006	3R_11652006_SNP [dm3] 3R_15826284_SNP [dm6]	T	G	7.663e^-5	0.824	INTRON rec & 1 other
2R	13839113	2R_13839113_SNP [dm3] 2R_17951608_SNP [dm6]	C	T	7.686e^-5	0.824	INTERGENIC
2R	8494614	2R_8494614_SNP [dm3] 2R_12607109_SNP [dm6]	C	A	7.707e^-5	0.824	INTRON Amph
2R	14456702	2R_14456702_SNP [dm3] 2R_18569197_SNP [dm6]	T	C	7.765e^-5	0.824	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8174529	2L_8174529_SNP [dm3] 2L_8174529_SNP [dm6]	T	C	7.782e^-5	0.824	SPLICE_SITE_REGION Piezo INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21062755	2R_21062755_SNP [dm3] 2R_25175232_SNP [dm6]	C	A	7.786e^-5	0.824	UTR_3_PRIME Peb DOWNSTREAM Peb
3L	12888783	3L_12888783_SNP [dm3] 3L_12895683_SNP [dm6]	C	A	7.800e^-5	0.824	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16487135	3R_16487135_SNP [dm3] 3R_20661413_SNP [dm6]	T	A	7.808e^-5	0.824	INTERGENIC
3L	18311307	3L_18311307_DEL [dm3] 3L_18318207_DEL [dm6]	AAGTT	G	7.853e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14391115	X_14391115_SNP [dm3] X_14497082_SNP [dm6]	G	A	7.912e^-5	0.824	UTR_3_PRIME CG12540
3R	22910625	3R_22910625_SNP [dm3] 3R_27084903_SNP [dm6]	A	T	7.917e^-5	0.824	INTRON Cpr97Ea
3L	7185008	3L_7185008_SNP [dm3] 3L_7191908_SNP [dm6]	C	G	7.932e^-5	0.824	INTERGENIC
2R	9530302	2R_9530302_SNP [dm3] 2R_13642797_SNP [dm6]	A	C	8.052e^-5	0.824	INTRON fas
2R	21048857	2R_21048857_SNP [dm3] 2R_25161334_SNP [dm6]	A	G	8.054e^-5	0.824	INTERGENIC
3R	8357737	3R_8357737_SNP [dm3] 3R_12532015_SNP [dm6]	C	T	8.062e^-5	0.824	INTRON Octbeta3R
3L	13624818	3L_13624818_SNP [dm3] 3L_13631718_SNP [dm6]	G	A	8.068e^-5	0.824	INTRON bru-3
2R	21100534	2R_21100534_SNP [dm3] 2R_25213011_SNP [dm6]	G	A	8.076e^-5	0.824	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24646018	3R_24646018_SNP [dm3] 3R_28820296_SNP [dm6]	G	T	8.134e^-5	0.824	START_GAINED CG1647 UTR_5_PRIME CG1647 UPSTREAM CG1523	TF binding site mE1_TFBS_ttk
3L	3915773	3L_3915773_SNP [dm3] 3L_3915773_SNP [dm6]	C	T	8.153e^-5	0.824	INTRON Eip63F-1
3L	3915779	3L_3915779_INS [dm3] 3L_3915779_INS [dm6]	A	AA	8.153e^-5	0.824	INTRON Eip63F-1
3R	21671666	3R_21671666_SNP [dm3] 3R_25845944_SNP [dm6]	C	T	8.174e^-5	0.824	UPSTREAM CR45655 EXON CR45654
2R	20990616	2R_20990616_SNP [dm3] 2R_25103093_SNP [dm6]	C	G	8.321e^-5	0.827	INTRON lov
2R	13938989	2R_13938989_SNP [dm3] 2R_18051484_SNP [dm6]	T	C	8.363e^-5	0.827	INTRON Muc55B
2R	7073244	2R_7073244_SNP [dm3] 2R_11185739_SNP [dm6]	T	A	8.372e^-5	0.827	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	21930664	2L_21930664_SNP [dm3] 2L_21930664_SNP [dm6]	C	G	8.401e^-5	0.827	EXON CR45334
2R	19400799	2R_19400799_SNP [dm3] 2R_23513276_SNP [dm6]	C	T	8.420e^-5	0.827	INTERGENIC
2L	14642070	2L_14642070_SNP [dm3] 2L_14642070_SNP [dm6]	A	T	8.518e^-5	0.829	INTRON osp
2R	21058777	2R_21058777_SNP [dm3] 2R_25171254_SNP [dm6]	C	T	8.571e^-5	0.829	DOWNSTREAM Sfp60F INTERGENIC
X	3257287	X_3257287_INS [dm3] X_3363254_INS [dm6]	T	TT	8.594e^-5	0.829	INTERGENIC
X	1244056	X_1244056_SNP [dm3] X_1350023_SNP [dm6]	A	G	8.619e^-5	0.829	UTR_3_PRIME CG12773 UPSTREAM CG11418	TF binding site mE1_TFBS_HSA
2R	8470408	2R_8470408_SNP [dm3] 2R_12582903_SNP [dm6]	T	C	8.721e^-5	0.83	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	21058262	2R_21058262_SNP [dm3] 2R_25170739_SNP [dm6]	T	A	8.755e^-5	0.83	DOWNSTREAM CG34038 INTERGENIC
3L	1480932	3L_1480932_SNP [dm3] 3L_1480932_SNP [dm6]	G	T	8.823e^-5	0.83	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	2888415	X_2888415_SNP [dm3] X_2994382_SNP [dm6]	C	G	8.850e^-5	0.83	INTRON kirre	TF binding site mE1_TFBS_HSA
3R	25742725	3R_25742725_SNP [dm3] 3R_29917003_SNP [dm6]	C	T	8.997e^-5	0.83	SYNONYMOUS_CODING trp UTR_3_PRIME trp
3R	11652016	3R_11652016_SNP [dm3] 3R_15826294_SNP [dm6]	G	A	9.058e^-5	0.83	INTRON rec & 1 other
3L	2576112	3L_2576112_SNP [dm3] 3L_2576112_SNP [dm6]	A	G	9.061e^-5	0.83	INTRON msn
3L	6259677	3L_6259677_SNP [dm3] 3L_6266577_SNP [dm6]	T	C	9.123e^-5	0.83	INTERGENIC
3L	9023930	3L_9023930_SNP [dm3] 3L_9030830_SNP [dm6]	C	T	9.138e^-5	0.83	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	21058215	2R_21058215_SNP [dm3] 2R_25170692_SNP [dm6]	G	A	9.188e^-5	0.83	DOWNSTREAM CG34038 INTERGENIC
2R	21100533	2R_21100533_SNP [dm3] 2R_25213010_SNP [dm6]	C	A	9.200e^-5	0.83	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9343849	3L_9343849_SNP [dm3] 3L_9350749_SNP [dm6]	A	T	9.204e^-5	0.83	NON_SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
2L	11346927	2L_11346927_SNP [dm3] 2L_11346927_SNP [dm6]	A	C	9.284e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20232380	3R_20232380_SNP [dm3] 3R_24406658_SNP [dm6]	C	T	9.286e^-5	0.83	INTRON nAChRalpha1
3L	8753905	3L_8753905_SNP [dm3] 3L_8760805_SNP [dm6]	G	A	9.295e^-5	0.83	NON_SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	10916341	3L_10916341_SNP [dm3] 3L_10923241_SNP [dm6]	T	C	9.426e^-5	0.836	INTERGENIC
3R	21311944	3R_21311944_SNP [dm3] 3R_25486222_SNP [dm6]	C	T	9.456e^-5	0.836	UTR_3_PRIME Dhap-at DOWNSTREAM CG42488 & 1 other	TF binding site mE1_TFBS_cad
X	2820988	X_2820988_SNP [dm3] X_2926955_SNP [dm6]	C	G	9.510e^-5	0.836	INTRON kirre & 1 other
2R	21049436	2R_21049436_SNP [dm3] 2R_25161913_SNP [dm6]	G	C	9.618e^-5	0.836	INTERGENIC
2R	7426786	2R_7426786_SNP [dm3] 2R_11539281_SNP [dm6]	T	A	9.686e^-5	0.836	INTERGENIC
3L	4236426	3L_4236426_SNP [dm3] 3L_4236426_SNP [dm6]	G	C	9.704e^-5	0.836	UPSTREAM ImpL2 INTERGENIC
2R	8473414	2R_8473414_SNP [dm3] 2R_12585909_SNP [dm6]	A	G	9.766e^-5	0.836	UTR_5_PRIME Sin3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	24836032	3R_24836032_SNP [dm3] 3R_29010310_SNP [dm6]	A	C	9.804e^-5	0.836	INTRON wat
2L	14642077	2L_14642077_SNP [dm3] 2L_14642077_SNP [dm6]	T	A	9.900e^-5	0.836	INTRON osp
3R	19766009	3R_19766009_SNP [dm3] 3R_23940287_SNP [dm6]	C	T	9.920e^-5	0.836	INTRON Gdh
3L	10964445	3L_10964445_SNP [dm3] 3L_10971345_SNP [dm6]	C	T	9.966e^-5	0.836	INTERGENIC
2R	8382997	2R_8382997_SNP [dm3] 2R_12495492_SNP [dm6]	C	T	1.004e^-4	0.836	UPSTREAM s-cup INTRON fdl
3R	21722341	3R_21722341_SNP [dm3] 3R_25896619_SNP [dm6]	C	T	1.009e^-4	0.836	SYNONYMOUS_CODING CG5948 UPSTREAM MCO3
2L	17992677	2L_17992677_SNP [dm3] 2L_17992677_SNP [dm6]	G	A	1.013e^-4	0.836	DOWNSTREAM Prosbeta5R2 & 1 other INTERGENIC
2L	14450972	2L_14450972_SNP [dm3] 2L_14450972_SNP [dm6]	C	T	1.015e^-4	0.836	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
X	20326420	X_20326420_SNP [dm3] X_20455393_SNP [dm6]	T	C	1.023e^-4	0.836	INTRON CG32506
2R	2048475	2R_2048475_SNP [dm3] 2R_6160970_SNP [dm6]	C	T	1.027e^-4	0.836	UPSTREAM tRNA:R2:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl
2L	11969982	2L_11969982_SNP [dm3] 2L_11969982_SNP [dm6]	G	A	1.031e^-4	0.836	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4082212	3R_4082212_DEL [dm3] 3R_8256490_DEL [dm6]	CC	C	1.036e^-4	0.836	INTRON mtg
2R	21100508	2R_21100508_SNP [dm3] 2R_25212985_SNP [dm6]	A	T	1.039e^-4	0.836	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	9098830	2R_9098830_SNP [dm3] 2R_13211325_SNP [dm6]	A	G	1.040e^-4	0.836	UTR_5_PRIME CG34312 & 1 other UTR_3_PRIME CG34235 UPSTREAM CG34312 DOWNSTREAM FLASH
3L	9786195	3L_9786195_SNP [dm3] 3L_9793095_SNP [dm6]	T	C	1.041e^-4	0.836	INTRON Zasp67
3L	3032084	3L_3032084_DEL [dm3] 3L_3032084_DEL [dm6]	CC	C	1.042e^-4	0.836	INTERGENIC
X	6052555	X_6052555_SNP [dm3] X_6158522_SNP [dm6]	T	C	1.046e^-4	0.836	INTRON Ca-alpha1T	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8493016	2R_8493016_SNP [dm3] 2R_12605511_SNP [dm6]	T	C	1.048e^-4	0.836	INTRON Amph
3R	25154545	3R_25154545_SNP [dm3] 3R_29328823_SNP [dm6]	C	T	1.052e^-4	0.836	INTERGENIC
3L	4631633	3L_4631633_SNP [dm3] 3L_4631633_SNP [dm6]	G	A	1.057e^-4	0.837	INTRON axo
2R	6531471	2R_6531471_SNP [dm3] 2R_10643966_SNP [dm6]	C	A	1.065e^-4	0.839	SPLICE_SITE_REGION Git INTRON Git	TF binding site mE1_TFBS_HSA
2R	16093268	2R_16093268_SNP [dm3] 2R_20205763_SNP [dm6]	G	T	1.077e^-4	0.841	INTERGENIC
3R	15756618	3R_15756618_SNP [dm3] 3R_19930896_SNP [dm6]	A	G	1.092e^-4	0.841	DOWNSTREAM mira INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	18536675	2R_18536675_SNP [dm3] 2R_22649170_SNP [dm6]	G	A	1.094e^-4	0.841	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22359175	2L_22359175_SNP [dm3] 2L_22359175_SNP [dm6]	C	G	1.095e^-4	0.841	INTRON CG17018	transposable element FlyBase
2L	21827068	2L_21827068_SNP [dm3] 2L_21827068_SNP [dm6]	C	G	1.095e^-4	0.841	INTERGENIC	transposable element FlyBase
2R	13839112	2R_13839112_SNP [dm3] 2R_17951607_SNP [dm6]	T	C	1.095e^-4	0.841	INTERGENIC
X	2888273	X_2888273_SNP [dm3] X_2994240_SNP [dm6]	T	A	1.098e^-4	0.841	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18301814	3L_18301814_SNP [dm3] 3L_18308714_SNP [dm6]	C	T	1.134e^-4	0.849	INTERGENIC
2R	12469313	2R_12469313_SNP [dm3] 2R_16581808_SNP [dm6]	T	A	1.141e^-4	0.849	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4861847	3L_4861847_SNP [dm3] 3L_4861847_SNP [dm6]	T	C	1.147e^-4	0.849	SYNONYMOUS_CODING CG17150
2L	14451000	2L_14451000_SNP [dm3] 2L_14451000_SNP [dm6]	A	C	1.150e^-4	0.849	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	14154561	3L_14154561_SNP [dm3] 3L_14161461_SNP [dm6]	C	T	1.161e^-4	0.849	INTERGENIC	regulatory region REDfly_CRMs
3L	18300332	3L_18300332_SNP [dm3] 3L_18307232_SNP [dm6]	C	T	1.169e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21838869	2L_21838869_SNP [dm3] 2L_21838869_SNP [dm6]	A	G	1.174e^-4	0.849	INTERGENIC
X	7215053	X_7215053_SNP [dm3] X_7321020_SNP [dm6]	C	T	1.177e^-4	0.849	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2057100	2R_2057100_SNP [dm3] 2R_6169595_SNP [dm6]	T	C	1.178e^-4	0.849	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11698247	3R_11698247_SNP [dm3] 3R_15872525_SNP [dm6]	T	A	1.178e^-4	0.849	INTRON CG31183
3R	22856734	3R_22856734_SNP [dm3] 3R_27031012_SNP [dm6]	A	G	1.181e^-4	0.849	INTRON RYa-R
2L	20592948	2L_20592948_DEL [dm3] 2L_20592948_DEL [dm6]	AA	G	1.183e^-4	0.849	INTRON CR44909
2R	4626258	2R_4626258_SNP [dm3] 2R_8738753_SNP [dm6]	G	A	1.185e^-4	0.849	DOWNSTREAM CG42615 INTRON CG8740
3R	14390471	3R_14390471_SNP [dm3] 3R_18564749_SNP [dm6]	T	A	1.189e^-4	0.849	UTR_5_PRIME CG43210 UTR_3_PRIME CG43194
2R	12469312	2R_12469312_SNP [dm3] 2R_16581807_SNP [dm6]	T	G	1.191e^-4	0.849	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20402455	3R_20402455_SNP [dm3] 3R_24576733_SNP [dm6]	G	T	1.191e^-4	0.849	INTRON CG13624
2R	8908342	2R_8908342_SNP [dm3] 2R_13020837_SNP [dm6]	G	A	1.193e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8908325	2R_8908325_SNP [dm3] 2R_13020820_SNP [dm6]	T	A	1.195e^-4	0.849	INTERGENIC	TF binding site mE1_TFBS_cad
3L	24076839	3L_24076839_SNP [dm3] 3L_24083739_SNP [dm6]	A	T	1.196e^-4	0.849	INTRON Snap25
3R	21315052	3R_21315052_SNP [dm3] 3R_25489330_SNP [dm6]	T	C	1.201e^-4	0.85	INTRON Dhap-at
3L	10916331	3L_10916331_SNP [dm3] 3L_10923231_SNP [dm6]	A	C	1.219e^-4	0.859	INTERGENIC
2R	8438797	2R_8438797_SNP [dm3] 2R_12551292_SNP [dm6]	T	C	1.235e^-4	0.866	INTRON fra
3R	26005610	3R_26005610_SNP [dm3] 3R_30179888_SNP [dm6]	T	G	1.241e^-4	0.866	UTR_3_PRIME CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	21882052	2L_21882052_SNP [dm3] 2L_21882052_SNP [dm6]	A	T	1.245e^-4	0.866	INTERGENIC
2R	14648108	2R_14648108_SNP [dm3] 2R_18760603_SNP [dm6]	C	T	1.253e^-4	0.866	UPSTREAM Jabba INTRON Jabba
3L	9184031	3L_9184031_SNP [dm3] 3L_9190931_SNP [dm6]	G	C	1.253e^-4	0.866	INTERGENIC
3L	3772254	3L_3772254_SNP [dm3] 3L_3772254_SNP [dm6]	T	C	1.265e^-4	0.866	INTRON CG32264
2R	17936438	2R_17936438_SNP [dm3] 2R_22048933_SNP [dm6]	T	A	1.266e^-4	0.866	INTERGENIC
2R	18202833	2R_18202833_SNP [dm3] 2R_22315328_SNP [dm6]	C	G	1.284e^-4	0.866	INTRON CR44758
3L	12483953	3L_12483953_SNP [dm3] 3L_12490853_SNP [dm6]	T	A	1.296e^-4	0.866	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 EXON CR45681	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18607646	2R_18607646_SNP [dm3] 2R_22720141_SNP [dm6]	T	G	1.298e^-4	0.866	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15757757	3R_15757757_DEL [dm3] 3R_19932035_DEL [dm6]	GA	G	1.299e^-4	0.866	UTR_3_PRIME mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4627567	2R_4627567_SNP [dm3] 2R_8740062_SNP [dm6]	C	G	1.299e^-4	0.866	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16358445	3L_16358445_SNP [dm3] 3L_16365345_SNP [dm6]	C	T	1.305e^-4	0.866	SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
2R	21058802	2R_21058802_SNP [dm3] 2R_25171279_SNP [dm6]	G	A	1.323e^-4	0.866	DOWNSTREAM Sfp60F INTERGENIC
3L	16126475	3L_16126475_SNP [dm3] 3L_16133375_SNP [dm6]	T	C	1.325e^-4	0.866	SYNONYMOUS_CODING CG16838	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	1329977	2R_1329977_SNP [dm3] 2R_5442472_SNP [dm6]	T	A	1.334e^-4	0.866	INTRON laccase2	transposable element FlyBase
2R	21054689	2R_21054689_DEL [dm3] 2R_25167166_DEL [dm6]	ATACGA	A	1.338e^-4	0.866	UPSTREAM CG34038 INTERGENIC
3L	10916315	3L_10916315_DEL [dm3] 3L_10923215_DEL [dm6]	TTAGTT	T	1.340e^-4	0.866	INTERGENIC
2L	19843565	2L_19843565_SNP [dm3] 2L_19843565_SNP [dm6]	C	T	1.349e^-4	0.866	INTRON sick
3L	12531180	3L_12531180_SNP [dm3] 3L_12538080_SNP [dm6]	C	T	1.356e^-4	0.866	NON_SYNONYMOUS_CODING sowah UTR_3_PRIME sowah UPSTREAM CG4069	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14549603	3R_14549603_SNP [dm3] 3R_18723881_SNP [dm6]	G	C	1.356e^-4	0.866	INTRON Cha
3L	18322991	3L_18322991_INS [dm3] 3L_18329891_INS [dm6]	T	TGTACAT	1.356e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14254753	2L_14254753_SNP [dm3] 2L_14254753_SNP [dm6]	A	G	1.365e^-4	0.866	INTERGENIC
X	7215070	X_7215070_SNP [dm3] X_7321037_SNP [dm6]	T	C	1.366e^-4	0.866	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9172871	2L_9172871_DEL [dm3] 2L_9172871_DEL [dm6]	AA	A	1.374e^-4	0.866	INTRON tai
3R	16722595	3R_16722595_SNP [dm3] 3R_20896873_SNP [dm6]	A	G	1.375e^-4	0.866	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9965059	2R_9965059_SNP [dm3] 2R_14077554_SNP [dm6]	T	C	1.377e^-4	0.866	INTRON Prosap
2R	16086808	2R_16086808_SNP [dm3] 2R_20199303_SNP [dm6]	A	T	1.380e^-4	0.866	INTERGENIC
2R	2048428	2R_2048428_SNP [dm3] 2R_6160923_SNP [dm6]	T	A	1.388e^-4	0.866	UPSTREAM tRNA:R2:42Ac INTRON EcR
3R	25238043	3R_25238043_SNP [dm3] 3R_29412321_SNP [dm6]	G	C	1.396e^-4	0.866	INTRON Ptp99A
3L	9184119	3L_9184119_SNP [dm3] 3L_9191019_SNP [dm6]	A	G	1.397e^-4	0.866	INTERGENIC
3L	22548787	3L_22548787_SNP [dm3] 3L_22555687_SNP [dm6]	G	A	1.405e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11397673	2R_11397673_SNP [dm3] 2R_15510168_SNP [dm6]	T	A	1.413e^-4	0.866	INTERGENIC
3R	17841788	3R_17841788_SNP [dm3] 3R_22016066_SNP [dm6]	T	C	1.415e^-4	0.866	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
3L	9786156	3L_9786156_SNP [dm3] 3L_9793056_SNP [dm6]	C	G	1.416e^-4	0.866	INTRON Zasp67
3L	12121296	3L_12121296_SNP [dm3] 3L_12128196_SNP [dm6]	C	G	1.426e^-4	0.866	SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
3R	4339836	3R_4339836_SNP [dm3] 3R_8514114_SNP [dm6]	G	T	1.429e^-4	0.866	INTERGENIC
3L	14931252	3L_14931252_SNP [dm3] 3L_14938152_SNP [dm6]	T	A	1.431e^-4	0.866	INTRON DCX-EMAP
3R	25175255	3R_25175255_SNP [dm3] 3R_29349533_SNP [dm6]	A	G	1.436e^-4	0.866	INTERGENIC
2R	14706744	2R_14706744_SNP [dm3] 2R_18819239_SNP [dm6]	C	A	1.443e^-4	0.866	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8908326	2R_8908326_SNP [dm3] 2R_13020821_SNP [dm6]	G	A	1.449e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
2R	21062666	2R_21062666_SNP [dm3] 2R_25175143_SNP [dm6]	T	C	1.449e^-4	0.866	UTR_3_PRIME Peb UPSTREAM PebII DOWNSTREAM Peb
2R	20269748	2R_20269748_SNP [dm3] 2R_24382225_SNP [dm6]	A	G	1.451e^-4	0.866	INTRON mAChR-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10501690	2R_10501690_SNP [dm3] 2R_14614185_SNP [dm6]	T	C	1.457e^-4	0.866	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2L	410859	2L_410859_SNP [dm3] 2L_410859_SNP [dm6]	G	A	1.463e^-4	0.866	SYNONYMOUS_CODING AP-2alpha	TF binding site mE1_TFBS_cad
3L	11344211	3L_11344211_SNP [dm3] 3L_11351111_SNP [dm6]	T	C	1.466e^-4	0.866	INTERGENIC
3R	25275940	3R_25275940_SNP [dm3] 3R_29450218_SNP [dm6]	C	A	1.470e^-4	0.866	INTRON Ptp99A
2L	19454706	2L_19454706_SNP [dm3] 2L_19454706_SNP [dm6]	T	G	1.470e^-4	0.866	UPSTREAM CG10026 INTRON CG10026	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6268404	3L_6268404_SNP [dm3] 3L_6275304_SNP [dm6]	A	G	1.476e^-4	0.866	UPSTREAM CG43168 INTERGENIC
3R	25175262	3R_25175262_SNP [dm3] 3R_29349540_SNP [dm6]	A	T	1.477e^-4	0.866	INTERGENIC
X	2820992	X_2820992_SNP [dm3] X_2926959_SNP [dm6]	T	C	1.483e^-4	0.866	INTRON kirre & 1 other
3L	11343120	3L_11343120_SNP [dm3] 3L_11350020_SNP [dm6]	A	C	1.489e^-4	0.866	UPSTREAM CR45251 INTERGENIC
3R	20232388	3R_20232388_SNP [dm3] 3R_24406666_SNP [dm6]	C	T	1.498e^-4	0.866	INTRON nAChRalpha1
2L	15167827	2L_15167827_SNP [dm3] 2L_15167827_SNP [dm6]	C	A	1.499e^-4	0.866	INTRON CG4168
2R	19400962	2R_19400962_SNP [dm3] 2R_23513439_SNP [dm6]	C	T	1.505e^-4	0.866	INTERGENIC
2R	4626447	2R_4626447_SNP [dm3] 2R_8738942_SNP [dm6]	G	A	1.506e^-4	0.866	INTRON CG8740
2R	15780283	2R_15780283_SNP [dm3] 2R_19892778_SNP [dm6]	T	A	1.507e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	3457528	2L_3457528_SNP [dm3] 2L_3457528_SNP [dm6]	G	C	1.508e^-4	0.866	UPSTREAM Cog3 INTRON Sec5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6528267	3L_6528267_SNP [dm3] 3L_6535167_SNP [dm6]	C	G	1.510e^-4	0.866	INTRON sfl
2R	12489138	2R_12489138_SNP [dm3] 2R_16601633_SNP [dm6]	G	A	1.515e^-4	0.866	INTRON CG8303
X	19053261	X_19053261_SNP [dm3] X_19159228_SNP [dm6]	G	T	1.518e^-4	0.866	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12469361	2R_12469361_SNP [dm3] 2R_16581856_SNP [dm6]	A	G	1.531e^-4	0.866	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14642064	2L_14642064_SNP [dm3] 2L_14642064_SNP [dm6]	T	A	1.540e^-4	0.866	INTRON osp
2L	6785648	2L_6785648_SNP [dm3] 2L_6785648_SNP [dm6]	A	G	1.550e^-4	0.866	INTRON nrv1
2L	1674791	2L_1674791_DEL [dm3] 2L_1674791_DEL [dm6]	AA	A	1.553e^-4	0.866	INTRON chinmo
2R	2048544	2R_2048544_SNP [dm3] 2R_6161039_SNP [dm6]	C	T	1.554e^-4	0.866	UPSTREAM tRNA:R2:42Ac DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	14456671	2R_14456671_DEL [dm3] 2R_18569166_DEL [dm6]	TTTGGCA	T	1.555e^-4	0.866	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21027192	2R_21027192_SNP [dm3] 2R_25139669_SNP [dm6]	G	C	1.557e^-4	0.866	UPSTREAM CG43106 & 1 other INTERGENIC
3L	11343729	3L_11343729_SNP [dm3] 3L_11350629_SNP [dm6]	A	T	1.562e^-4	0.866	UPSTREAM CR45251 INTERGENIC
3R	24388324	3R_24388324_SNP [dm3] 3R_28562602_SNP [dm6]	G	A	1.562e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15620653	3L_15620653_SNP [dm3] 3L_15627553_SNP [dm6]	G	T	1.565e^-4	0.866	INTRON comm3
2L	5389870	2L_5389870_SNP [dm3] 2L_5389870_SNP [dm6]	T	C	1.566e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	21070058	2R_21070058_SNP [dm3] 2R_25182535_SNP [dm6]	A	G	1.573e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15886999	2L_15886999_SNP [dm3] 2L_15886999_SNP [dm6]	A	T	1.574e^-4	0.866	UPSTREAM CR31824 INTERGENIC
3R	26936116	3R_26936116_SNP [dm3] 3R_31110394_SNP [dm6]	C	A	1.575e^-4	0.866	INTERGENIC
3L	16358436	3L_16358436_SNP [dm3] 3L_16365336_SNP [dm6]	A	G	1.591e^-4	0.866	NON_SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
2R	14456704	2R_14456704_SNP [dm3] 2R_18569199_SNP [dm6]	C	T	1.592e^-4	0.866	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18614338	2R_18614338_SNP [dm3] 2R_22726833_SNP [dm6]	C	T	1.593e^-4	0.866	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	2820966	X_2820966_SNP [dm3] X_2926933_SNP [dm6]	T	C	1.598e^-4	0.866	INTRON kirre & 1 other
3R	14304620	3R_14304620_SNP [dm3] 3R_18478898_SNP [dm6]	T	C	1.602e^-4	0.866	INTRON fru
3L	22145652	3L_22145652_SNP [dm3] 3L_22152552_SNP [dm6]	G	T	1.606e^-4	0.866	INTRON olf413
3L	4631971	3L_4631971_SNP [dm3] 3L_4631971_SNP [dm6]	A	T	1.607e^-4	0.866	INTRON axo
2L	21900426	2L_21900426_DEL [dm3] 2L_21900426_DEL [dm6]	AAA	A	1.618e^-4	0.867	INTERGENIC	transposable element FlyBase
3R	17827430	3R_17827430_SNP [dm3] 3R_22001708_SNP [dm6]	C	T	1.620e^-4	0.867	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10604592	3L_10604592_SNP [dm3] 3L_10611492_SNP [dm6]	T	G	1.623e^-4	0.867	INTERGENIC
2R	20277886	2R_20277886_SNP [dm3] 2R_24390363_SNP [dm6]	C	T	1.649e^-4	0.871	UPSTREAM CR44813 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18614754	2R_18614754_DEL [dm3] 2R_22727249_DEL [dm6]	AAAGATAAACATAAAGA...	A	1.652e^-4	0.871	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7423508	2R_7423508_SNP [dm3] 2R_11536003_SNP [dm6]	G	A	1.655e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11696511	3R_11696511_SNP [dm3] 3R_15870789_SNP [dm6]	A	G	1.660e^-4	0.871	INTRON CG31183
2R	13937774	2R_13937774_SNP [dm3] 2R_18050269_SNP [dm6]	T	C	1.660e^-4	0.871	UTR_3_PRIME Muc55B UPSTREAM CG14495
3R	20773614	3R_20773614_SNP [dm3] 3R_24947892_SNP [dm6]	G	C	1.662e^-4	0.871	SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	906185	3L_906185_SNP [dm3] 3L_906185_SNP [dm6]	G	T	1.670e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15756509	3R_15756509_SNP [dm3] 3R_19930787_SNP [dm6]	C	T	1.670e^-4	0.871	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	3767901	3L_3767901_SNP [dm3] 3L_3767901_SNP [dm6]	T	A	1.671e^-4	0.871	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	18300339	3L_18300339_SNP [dm3] 3L_18307239_SNP [dm6]	T	G	1.688e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18300394	3L_18300394_SNP [dm3] 3L_18307294_SNP [dm6]	A	G	1.689e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16231302	2R_16231302_SNP [dm3] 2R_20343797_SNP [dm6]	G	T	1.704e^-4	0.877	UPSTREAM CG13870 INTERGENIC
3R	27335732	3R_27335732_DEL [dm3] 3R_31510010_DEL [dm6]	AGTCCCCAGATGGAA...	A	1.715e^-4	0.877	INTERGENIC
X	14391121	X_14391121_SNP [dm3] X_14497088_SNP [dm6]	T	G	1.717e^-4	0.877	UTR_3_PRIME CG12540
X	5414065	X_5414065_SNP [dm3] X_5520032_SNP [dm6]	A	G	1.721e^-4	0.877	INTERGENIC
2R	14517810	2R_14517810_SNP [dm3] 2R_18630305_SNP [dm6]	G	T	1.724e^-4	0.877	DOWNSTREAM Eip55E INTRON CG5482
X	18459612	X_18459612_SNP [dm3] X_18565579_SNP [dm6]	G	A	1.730e^-4	0.877	UPSTREAM tRNA:CR32546 & 1 other INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	21097573	2R_21097573_SNP [dm3] 2R_25210050_SNP [dm6]	C	T	1.731e^-4	0.877	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4199122	X_4199122_INS [dm3] X_4305089_INS [dm6]	A	AA	1.740e^-4	0.877	INTERGENIC
2L	14642047	2L_14642047_SNP [dm3] 2L_14642047_SNP [dm6]	G	A	1.741e^-4	0.877	INTRON osp
3L	8966357	3L_8966357_SNP [dm3] 3L_8973257_SNP [dm6]	G	T	1.742e^-4	0.877	SYNONYMOUS_CODING pix	TF binding site mE1_TFBS_sens
X	18455039	X_18455039_SNP [dm3] X_18561006_SNP [dm6]	G	C	1.744e^-4	0.877	INTRON Bx
3L	6006166	3L_6006166_SNP [dm3] 3L_6013066_SNP [dm6]	A	G	1.757e^-4	0.881	INTRON PVRAP
3R	20503762	3R_20503762_SNP [dm3] 3R_24678040_SNP [dm6]	T	C	1.788e^-4	0.893	INTRON slo
X	19650126	X_19650126_SNP [dm3] X_19756093_SNP [dm6]	C	G	1.790e^-4	0.893	INTRON Pmp70
3L	9786151	3L_9786151_SNP [dm3] 3L_9793051_SNP [dm6]	C	A	1.812e^-4	0.9	INTRON Zasp67
2R	21027102	2R_21027102_SNP [dm3] 2R_25139579_SNP [dm6]	G	A	1.817e^-4	0.9	UTR_5_PRIME lov & 1 other
2L	22342432	2L_22342432_SNP [dm3] 2L_22342432_SNP [dm6]	A	T	1.818e^-4	0.9	INTRON CG17018
2R	8514417	2R_8514417_SNP [dm3] 2R_12626912_SNP [dm6]	C	T	1.837e^-4	0.904	SYNONYMOUS_CODING CG17760
2R	17942079	2R_17942079_SNP [dm3] 2R_22054574_SNP [dm6]	C	A	1.839e^-4	0.904	INTERGENIC
2R	7911768	2R_7911768_SNP [dm3] 2R_12024263_SNP [dm6]	G	T	1.850e^-4	0.904	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15270355	2R_15270355_SNP [dm3] 2R_19382850_SNP [dm6]	G	C	1.854e^-4	0.904	NON_SYNONYMOUS_CODING CG10073
3L	10152931	3L_10152931_SNP [dm3] 3L_10159831_SNP [dm6]	G	C	1.860e^-4	0.904	INTRON dpr10
2R	21018669	2R_21018669_DEL [dm3] 2R_25131146_DEL [dm6]	CCGTAAAAATATATAATGTT...	C	1.863e^-4	0.904	INTRON lov
3R	20237688	3R_20237688_SNP [dm3] 3R_24411966_SNP [dm6]	C	T	1.869e^-4	0.904	INTRON nAChRalpha1
3R	25238039	3R_25238039_SNP [dm3] 3R_29412317_SNP [dm6]	T	C	1.881e^-4	0.904	INTRON Ptp99A
2R	21027226	2R_21027226_SNP [dm3] 2R_25139703_SNP [dm6]	C	T	1.883e^-4	0.904	UPSTREAM CG43106 & 1 other INTERGENIC
3L	6156181	3L_6156181_SNP [dm3] 3L_6163081_SNP [dm6]	G	T	1.889e^-4	0.904	UPSTREAM CG13296 EXON CR45744	TF binding site mE1_TFBS_cad
2R	14706871	2R_14706871_SNP [dm3] 2R_18819366_SNP [dm6]	T	G	1.899e^-4	0.904	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15323521	3L_15323521_SNP [dm3] 3L_15330421_SNP [dm6]	A	C	1.908e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15516454	X_15516454_DEL [dm3] X_15622421_DEL [dm6]	TT	T	1.915e^-4	0.904	INTRON sog	TF binding site BDTNP1_TFBS_dl
3L	10930560	3L_10930560_SNP [dm3] 3L_10937460_SNP [dm6]	A	T	1.928e^-4	0.904	INTERGENIC
2R	7405869	2R_7405869_SNP [dm3] 2R_11518364_SNP [dm6]	C	G	1.931e^-4	0.904	INTERGENIC
2L	14143427	2L_14143427_SNP [dm3] 2L_14143427_SNP [dm6]	C	A	1.936e^-4	0.904	INTRON CG17341
2R	21057510	2R_21057510_SNP [dm3] 2R_25169987_SNP [dm6]	T	A	1.939e^-4	0.904	DOWNSTREAM CG34038 INTERGENIC
3R	21027333	3R_21027333_SNP [dm3] 3R_25201611_SNP [dm6]	G	A	1.940e^-4	0.904	SYNONYMOUS_CODING Cad96Ca INTRON CG13654
2R	15340342	2R_15340342_SNP [dm3] 2R_19452837_SNP [dm6]	T	C	1.946e^-4	0.904	INTRON CG7744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	9020620	3L_9020620_SNP [dm3] 3L_9027520_SNP [dm6]	C	A	1.948e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9965089	2R_9965089_SNP [dm3] 2R_14077584_SNP [dm6]	T	C	1.951e^-4	0.904	INTRON Prosap
2R	2050775	2R_2050775_SNP [dm3] 2R_6163270_SNP [dm6]	C	A	1.952e^-4	0.904	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	transposable element FlyBase
3L	16848349	3L_16848349_SNP [dm3] 3L_16855249_SNP [dm6]	T	C	1.957e^-4	0.904	UPSTREAM sina INTRON Rh4 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	18311158	3L_18311158_SNP [dm3] 3L_18318058_SNP [dm6]	G	A	1.962e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18311159	3L_18311159_SNP [dm3] 3L_18318059_SNP [dm6]	G	C	1.962e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3878563	X_3878563_SNP [dm3] X_3984530_SNP [dm6]	C	T	1.964e^-4	0.904	INTERGENIC
X	11320877	X_11320877_SNP [dm3] X_11426844_SNP [dm6]	C	A	1.970e^-4	0.904	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18296548	3L_18296548_SNP [dm3] 3L_18303448_SNP [dm6]	C	A	1.972e^-4	0.904	UTR_3_PRIME grim	TF binding site BDTNP1_TFBS_da
3L	10930399	3L_10930399_SNP [dm3] 3L_10937299_SNP [dm6]	G	C	1.973e^-4	0.904	INTERGENIC
3R	27335752	3R_27335752_SNP [dm3] 3R_31510030_SNP [dm6]	A	T	1.975e^-4	0.904	INTERGENIC
2R	2042594	2R_2042594_SNP [dm3] 2R_6155089_SNP [dm6]	G	T	1.977e^-4	0.904	INTRON EcR
3L	18300338	3L_18300338_SNP [dm3] 3L_18307238_SNP [dm6]	C	T	1.981e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14063823	X_14063823_SNP [dm3] X_14169790_SNP [dm6]	G	T	2.008e^-4	0.912	NON_SYNONYMOUS_CODING CG12480
3R	16580308	3R_16580308_SNP [dm3] 3R_20754586_SNP [dm6]	C	A	2.009e^-4	0.912	DOWNSTREAM CG42322 INTRON CG42322
2R	13508054	2R_13508054_SNP [dm3] 2R_17620549_SNP [dm6]	T	A	2.021e^-4	0.914	INTRON CG10936
3L	4343617	3L_4343617_SNP [dm3] 3L_4343617_SNP [dm6]	C	T	2.021e^-4	0.914	INTRON Cip4
3L	23683135	3L_23683135_SNP [dm3] 3L_23690035_SNP [dm6]	G	T	2.037e^-4	0.918	DOWNSTREAM CR45174 & 1 other INTERGENIC
2L	6269783	2L_6269783_SNP [dm3] 2L_6269783_SNP [dm6]	A	G	2.047e^-4	0.921	INTRON Ddr
2L	16417659	2L_16417659_SNP [dm3] 2L_16417659_SNP [dm6]	A	C	2.063e^-4	0.925	DOWNSTREAM snoRNA:Me28S-A2958 INTRON CG5888	TF binding site mE1_TFBS_inv
3R	25276098	3R_25276098_SNP [dm3] 3R_29450376_SNP [dm6]	C	T	2.078e^-4	0.925	INTRON Ptp99A
X	8747839	X_8747839_SNP [dm3] X_8853806_SNP [dm6]	G	T	2.082e^-4	0.925	UTR_5_PRIME CG12075 INTRON CG12075
2R	11977088	2R_11977088_SNP [dm3] 2R_16089583_SNP [dm6]	G	C	2.091e^-4	0.925	SYNONYMOUS_CODING Dg
X	8635765	X_8635765_SNP [dm3] X_8741732_SNP [dm6]	G	T	2.091e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6501703	2L_6501703_SNP [dm3] 2L_6501703_SNP [dm6]	G	A	2.092e^-4	0.925	INTRON CG31637	TF binding site mE1_TFBS_sens
3R	8357731	3R_8357731_SNP [dm3] 3R_12532009_SNP [dm6]	A	G	2.096e^-4	0.925	INTRON Octbeta3R
3R	19444968	3R_19444968_SNP [dm3] 3R_23619246_SNP [dm6]	A	G	2.108e^-4	0.925	INTRON CG31145
X	6806441	X_6806441_DEL [dm3] X_6912408_DEL [dm6]	AA	G	2.108e^-4	0.925	INTRON CG14431
2R	17116213	2R_17116213_SNP [dm3] 2R_21228708_SNP [dm6]	G	A	2.120e^-4	0.925	INTRON ASPP
X	19944476	X_19944476_SNP [dm3] X_20050443_SNP [dm6]	T	C	2.122e^-4	0.925	UPSTREAM CG9570 INTRON Dop2R
2L	21827069	2L_21827069_SNP [dm3] 2L_21827069_SNP [dm6]	A	T	2.127e^-4	0.925	INTERGENIC	transposable element FlyBase
3L	4100892	3L_4100892_SNP [dm3] 3L_4100892_SNP [dm6]	G	A	2.130e^-4	0.925	INTRON CG14995
2R	20468047	2R_20468047_SNP [dm3] 2R_24580524_SNP [dm6]	C	A	2.131e^-4	0.925	UPSTREAM CG4681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	13937771	2R_13937771_INS [dm3] 2R_18050266_INS [dm6]	T	TATTAGGAATCTCAAATTT...	2.135e^-4	0.925	UTR_3_PRIME Muc55B UPSTREAM CG14495
2R	16737226	2R_16737226_SNP [dm3] 2R_20849721_SNP [dm6]	A	C	2.136e^-4	0.925	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7589473	X_7589473_DEL [dm3] X_7695440_DEL [dm6]	AA	A	2.157e^-4	0.932	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	23052292	3R_23052292_SNP [dm3] 3R_27226570_SNP [dm6]	G	A	2.169e^-4	0.934	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
2R	10442194	2R_10442194_SNP [dm3] 2R_14554689_SNP [dm6]	C	A	2.173e^-4	0.934	UPSTREAM CG43919 INTRON ttv
3L	3915737	3L_3915737_SNP [dm3] 3L_3915737_SNP [dm6]	G	T	2.177e^-4	0.934	INTRON Eip63F-1
3R	27336586	3R_27336586_SNP [dm3] 3R_31510864_SNP [dm6]	G	A	2.183e^-4	0.935	INTERGENIC
2L	21091179	2L_21091179_INS [dm3] 2L_21091179_INS [dm6]	C	CCGATC	2.196e^-4	0.938	UPSTREAM CG14397 DOWNSTREAM CG9259 INTERGENIC
X	3042413	X_3042413_SNP [dm3] X_3148380_SNP [dm6]	C	G	2.205e^-4	0.94	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5362474	2R_5362474_SNP [dm3] 2R_9474969_SNP [dm6]	G	T	2.211e^-4	0.941	SYNONYMOUS_CODING Camta
3R	10235005	3R_10235005_SNP [dm3] 3R_14409283_SNP [dm6]	G	C	2.224e^-4	0.944	SYNONYMOUS_CODING cv-c
2R	6530708	2R_6530708_SNP [dm3] 2R_10643203_SNP [dm6]	G	A	2.237e^-4	0.947	INTRON Git	TF binding site mE1_TFBS_HSA
3R	10350746	3R_10350746_SNP [dm3] 3R_14525024_SNP [dm6]	G	A	2.257e^-4	0.948	INTRON Pde6
3L	9343847	3L_9343847_SNP [dm3] 3L_9350747_SNP [dm6]	T	C	2.258e^-4	0.948	SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
3R	11696594	3R_11696594_INS [dm3] 3R_15870872_INS [dm6]	T	TGT	2.262e^-4	0.948	INTRON CG31183
2L	6786901	2L_6786901_SNP [dm3] 2L_6786901_SNP [dm6]	A	G	2.265e^-4	0.948	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20276477	2R_20276477_SNP [dm3] 2R_24388954_SNP [dm6]	T	C	2.267e^-4	0.948	INTRON mAChR-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9311471	2L_9311471_SNP [dm3] 2L_9311471_SNP [dm6]	A	G	2.270e^-4	0.948	INTERGENIC
3L	9178766	3L_9178766_SNP [dm3] 3L_9185666_SNP [dm6]	G	A	2.276e^-4	0.949	INTERGENIC
X	20364283	X_20364283_SNP [dm3] X_20493256_SNP [dm6]	C	T	2.282e^-4	0.949	INTRON RhoGAP19D
2L	16673983	2L_16673983_SNP [dm3] 2L_16673983_SNP [dm6]	A	G	2.306e^-4	0.954	INTRON Trpgamma
3L	6001909	3L_6001909_DEL [dm3] 3L_6008809_DEL [dm6]	TCT	T	2.309e^-4	0.954	DOWNSTREAM alphaKap4 INTRON PVRAP
3R	11648251	3R_11648251_SNP [dm3] 3R_15822529_SNP [dm6]	C	T	2.310e^-4	0.954	SYNONYMOUS_CODING alpha-Man-IIb DOWNSTREAM rec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12260779	2L_12260779_SNP [dm3] 2L_12260779_SNP [dm6]	T	C	2.315e^-4	0.954	INTRON aret
3L	9786199	3L_9786199_SNP [dm3] 3L_9793099_SNP [dm6]	C	T	2.325e^-4	0.956	INTRON Zasp67
2R	13219288	2R_13219288_SNP [dm3] 2R_17331783_SNP [dm6]	G	T	2.338e^-4	0.956	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	8513958	2R_8513958_SNP [dm3] 2R_12626453_SNP [dm6]	G	A	2.339e^-4	0.956	INTRON CG17760
3L	10464616	3L_10464616_INS [dm3] 3L_10471516_INS [dm6]	A	AC	2.339e^-4	0.956	INTERGENIC
2R	21020993	2R_21020993_SNP [dm3] 2R_25133470_SNP [dm6]	A	T	2.353e^-4	0.956	INTRON lov
X	9129675	X_9129675_SNP [dm3] X_9235642_SNP [dm6]	A	G	2.355e^-4	0.956	DOWNSTREAM mir-4916 INTRON Ir8a
2R	7073212	2R_7073212_SNP [dm3] 2R_11185707_SNP [dm6]	A	G	2.358e^-4	0.956	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	19444930	3R_19444930_SNP [dm3] 3R_23619208_SNP [dm6]	G	A	2.360e^-4	0.956	INTRON CG31145
3R	25246383	3R_25246383_SNP [dm3] 3R_29420661_SNP [dm6]	T	A	2.364e^-4	0.956	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3763283	3L_3763283_SNP [dm3] 3L_3763283_SNP [dm6]	G	T	2.376e^-4	0.958	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16966972	2R_16966972_SNP [dm3] 2R_21079467_SNP [dm6]	C	T	2.387e^-4	0.958	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13704833	2R_13704833_SNP [dm3] 2R_17817328_SNP [dm6]	T	C	2.395e^-4	0.958	INTRON grh	regulatory region REDfly_CRMs
2R	21052085	2R_21052085_SNP [dm3] 2R_25164562_SNP [dm6]	A	G	2.400e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6072111	3R_6072111_SNP [dm3] 3R_10246389_SNP [dm6]	T	C	2.411e^-4	0.958	NON_SYNONYMOUS_CODING CG42795
2R	11435305	2R_11435305_SNP [dm3] 2R_15547800_SNP [dm6]	T	G	2.423e^-4	0.958	INTRON CG8192
3L	12899174	3L_12899174_SNP [dm3] 3L_12906074_SNP [dm6]	A	T	2.432e^-4	0.958	INTERGENIC
2R	18608060	2R_18608060_SNP [dm3] 2R_22720555_SNP [dm6]	A	G	2.438e^-4	0.958	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23322613	3L_23322613_SNP [dm3] 3L_23329513_SNP [dm6]	G	A	2.456e^-4	0.958	UTR_3_PRIME alpha-Cat INTRON alpha-Cat	transposable element FlyBase
2R	20276411	2R_20276411_SNP [dm3] 2R_24388888_SNP [dm6]	T	C	2.458e^-4	0.958	INTRON mAChR-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8469759	2R_8469759_SNP [dm3] 2R_12582254_SNP [dm6]	C	A	2.462e^-4	0.958	INTRON Sin3A	TF binding site mE1_TFBS_cad
2L	3534525	2L_3534525_SNP [dm3] 2L_3534525_SNP [dm6]	G	A	2.471e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15323518	3L_15323518_SNP [dm3] 3L_15330418_SNP [dm6]	A	G	2.480e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13444901	3L_13444901_SNP [dm3] 3L_13451801_SNP [dm6]	C	T	2.485e^-4	0.958	INTRON CG10738	TF binding site mE1_TFBS_disco
3R	10350740	3R_10350740_SNP [dm3] 3R_14525018_SNP [dm6]	T	C	2.491e^-4	0.958	INTRON Pde6
2L	16366622	2L_16366622_SNP [dm3] 2L_16366622_SNP [dm6]	T	C	2.495e^-4	0.958	INTRON jhamt
2L	5416518	2L_5416518_SNP [dm3] 2L_5416518_SNP [dm6]	A	G	2.500e^-4	0.958	UTR_3_PRIME H15 DOWNSTREAM H15	TF binding site mE1_TFBS_Kr
2R	2560907	2R_2560907_SNP [dm3] 2R_6673402_SNP [dm6]	A	G	2.505e^-4	0.958	UPSTREAM PGAP3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	24961412	3R_24961412_SNP [dm3] 3R_29135690_SNP [dm6]	G	T	2.514e^-4	0.958	SYNONYMOUS_CODING Vha100-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10828904	2L_10828904_SNP [dm3] 2L_10828904_SNP [dm6]	C	A	2.517e^-4	0.958	INTRON Nos
2R	7960000	2R_7960000_SNP [dm3] 2R_12072495_SNP [dm6]	T	A	2.518e^-4	0.958	INTRON CG8888
2L	9173115	2L_9173115_DEL [dm3] 2L_9173115_DEL [dm6]	AA	A	2.519e^-4	0.958	INTRON tai
2L	16565839	2L_16565839_INS [dm3] 2L_16565839_INS [dm6]	A	AGA	2.523e^-4	0.958	INTRON CG42389
2R	16279957	2R_16279957_SNP [dm3] 2R_20392452_SNP [dm6]	G	A	2.524e^-4	0.958	INTERGENIC
3L	18298800	3L_18298800_SNP [dm3] 3L_18305700_SNP [dm6]	G	A	2.527e^-4	0.958	INTERGENIC
X	5438462	X_5438462_SNP [dm3] X_5544429_SNP [dm6]	A	T	2.537e^-4	0.958	INTRON Vsx2
2R	17942111	2R_17942111_SNP [dm3] 2R_22054606_SNP [dm6]	C	A	2.539e^-4	0.958	INTERGENIC
2R	12817166	2R_12817166_SNP [dm3] 2R_16929661_SNP [dm6]	G	C	2.539e^-4	0.958	INTRON Pkc53E
X	14391108	X_14391108_SNP [dm3] X_14497075_SNP [dm6]	A	G	2.543e^-4	0.958	UTR_3_PRIME CG12540
2R	13221670	2R_13221670_SNP [dm3] 2R_17334165_SNP [dm6]	T	C	2.563e^-4	0.958	INTRON mbl
X	9908165	X_9908165_SNP [dm3] X_10014132_SNP [dm6]	G	A	2.565e^-4	0.958	UTR_3_PRIME CG2990
2R	8609734	2R_8609734_SNP [dm3] 2R_12722229_SNP [dm6]	T	C	2.568e^-4	0.958	INTRON CG42663
2R	5608477	2R_5608477_SNP [dm3] 2R_9720972_SNP [dm6]	C	T	2.573e^-4	0.958	INTRON sqa
2R	16093269	2R_16093269_SNP [dm3] 2R_20205764_SNP [dm6]	C	A	2.592e^-4	0.958	INTERGENIC
3L	13442104	3L_13442104_SNP [dm3] 3L_13449004_SNP [dm6]	G	A	2.594e^-4	0.958	NON_SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
3L	16358512	3L_16358512_SNP [dm3] 3L_16365412_SNP [dm6]	G	A	2.596e^-4	0.958	NON_SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
X	6091999	X_6091999_SNP [dm3] X_6197966_SNP [dm6]	A	G	2.608e^-4	0.958	SYNONYMOUS_CODING CG32751
3R	13318603	3R_13318603_INS [dm3] 3R_17492881_INS [dm6]	T	TCGTGATAT	2.624e^-4	0.958	INTRON Dscam3
3L	9786143	3L_9786143_SNP [dm3] 3L_9793043_SNP [dm6]	A	G	2.628e^-4	0.958	INTRON Zasp67
3R	25734984	3R_25734984_SNP [dm3] 3R_29909262_SNP [dm6]	G	A	2.629e^-4	0.958	SYNONYMOUS_CODING CG31036
2L	4098853	2L_4098853_SNP [dm3] 2L_4098853_SNP [dm6]	C	T	2.629e^-4	0.958	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18311280	3L_18311280_DEL [dm3] 3L_18318180_DEL [dm6]	AT	A	2.632e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18311285	3L_18311285_SNP [dm3] 3L_18318185_SNP [dm6]	G	T	2.632e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18311288	3L_18311288_SNP [dm3] 3L_18318188_SNP [dm6]	T	A	2.632e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2050602	2R_2050602_SNP [dm3] 2R_6163097_SNP [dm6]	G	A	2.646e^-4	0.958	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	TF binding site mE1_TFBS_cad
2R	12483583	2R_12483583_SNP [dm3] 2R_16596078_SNP [dm6]	G	A	2.663e^-4	0.958	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
2R	18608381	2R_18608381_SNP [dm3] 2R_22720876_SNP [dm6]	T	C	2.672e^-4	0.958	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16165575	2R_16165575_SNP [dm3] 2R_20278070_SNP [dm6]	G	A	2.686e^-4	0.958	SYNONYMOUS_CODING CG9143 DOWNSTREAM CG9090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18607949	2R_18607949_SNP [dm3] 2R_22720444_SNP [dm6]	A	G	2.687e^-4	0.958	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7777710	2L_7777710_SNP [dm3] 2L_7777710_SNP [dm6]	G	T	2.688e^-4	0.958	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
2R	8469560	2R_8469560_SNP [dm3] 2R_12582055_SNP [dm6]	T	G	2.691e^-4	0.958	INTRON Sin3A	TF binding site mE1_TFBS_cad
3R	27332538	3R_27332538_SNP [dm3] 3R_31506816_SNP [dm6]	T	C	2.693e^-4	0.958	UTR_3_PRIME mey	TF binding site BDTNP1_TFBS_prd
2L	10232429	2L_10232429_SNP [dm3] 2L_10232429_SNP [dm6]	T	C	2.694e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	21062271	2R_21062271_SNP [dm3] 2R_25174748_SNP [dm6]	A	G	2.697e^-4	0.958	UPSTREAM PebII DOWNSTREAM Peb INTERGENIC	transposable element FlyBase
3L	3871182	3L_3871182_SNP [dm3] 3L_3871182_SNP [dm6]	G	A	2.712e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13988937	3L_13988937_SNP [dm3] 3L_13995837_SNP [dm6]	C	A	2.720e^-4	0.958	INTRON 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17609669	3R_17609669_SNP [dm3] 3R_21783947_SNP [dm6]	T	C	2.728e^-4	0.958	UTR_3_PRIME CASK EXON CRG
2R	2050143	2R_2050143_SNP [dm3] 2R_6162638_SNP [dm6]	T	A	2.740e^-4	0.958	UPSTREAM tRNA:N5:42Ac DOWNSTREAM tRNA:K2:42Ac & 2 others INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12031612	2R_12031612_SNP [dm3] 2R_16144107_SNP [dm6]	T	C	2.745e^-4	0.958	SYNONYMOUS_CODING Aats-cys	TF binding site mE1_TFBS_sens
2R	8487648	2R_8487648_SNP [dm3] 2R_12600143_SNP [dm6]	C	G	2.751e^-4	0.958	INTRON Amph
3R	24441429	3R_24441429_SNP [dm3] 3R_28615707_SNP [dm6]	A	G	2.752e^-4	0.958	NON_SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9172889	2L_9172889_SNP [dm3] 2L_9172889_SNP [dm6]	T	C	2.758e^-4	0.958	INTRON tai
2L	15887008	2L_15887008_SNP [dm3] 2L_15887008_SNP [dm6]	A	C	2.761e^-4	0.958	UPSTREAM CR31824 INTERGENIC
2L	10009565	2L_10009565_SNP [dm3] 2L_10009565_SNP [dm6]	C	T	2.763e^-4	0.958	UPSTREAM Trp1 DOWNSTREAM CG4747 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12515425	2L_12515425_SNP [dm3] 2L_12515425_SNP [dm6]	G	A	2.774e^-4	0.958	INTRON bun
2R	21020369	2R_21020369_SNP [dm3] 2R_25132846_SNP [dm6]	G	A	2.781e^-4	0.958	INTRON lov	TF binding site mE1_TFBS_Kr
3R	24542173	3R_24542173_SNP [dm3] 3R_28716451_SNP [dm6]	C	T	2.784e^-4	0.958	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo
3R	10413756	3R_10413756_INS [dm3] 3R_14588034_INS [dm6]	C	CGCAAAACCCATTTGC...	2.786e^-4	0.958	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8946245	2L_8946245_SNP [dm3] 2L_8946245_SNP [dm6]	A	C	2.790e^-4	0.958	INTRON C1GalTA
3L	18295550	3L_18295550_SNP [dm3] 3L_18302450_SNP [dm6]	T	C	2.801e^-4	0.958	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	7072899	2R_7072899_SNP [dm3] 2R_11185394_SNP [dm6]	T	A	2.804e^-4	0.958	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	7072904	2R_7072904_SNP [dm3] 2R_11185399_SNP [dm6]	A	T	2.804e^-4	0.958	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	21810935	2L_21810935_SNP [dm3] 2L_21810935_SNP [dm6]	G	A	2.806e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10232345	2L_10232345_SNP [dm3] 2L_10232345_SNP [dm6]	T	A	2.810e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7419987	2R_7419987_SNP [dm3] 2R_11532482_SNP [dm6]	G	T	2.812e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2316593	3L_2316593_SNP [dm3] 3L_2316593_SNP [dm6]	A	G	2.818e^-4	0.958	DOWNSTREAM CR45427 INTERGENIC
3L	6672583	3L_6672583_SNP [dm3] 3L_6679483_SNP [dm6]	T	A	2.821e^-4	0.958	INTERGENIC
3R	23130141	3R_23130141_SNP [dm3] 3R_27304419_SNP [dm6]	G	A	2.826e^-4	0.958	INTRON CG3339
X	17343578	X_17343578_SNP [dm3] X_17449545_SNP [dm6]	A	C	2.828e^-4	0.958	NON_SYNONYMOUS_CODING CG8568 UPSTREAM p-cup
3L	18307331	3L_18307331_SNP [dm3] 3L_18314231_SNP [dm6]	C	T	2.835e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7891465	2R_7891465_SNP [dm3] 2R_12003960_SNP [dm6]	T	C	2.839e^-4	0.958	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_chinmo
2R	13221650	2R_13221650_SNP [dm3] 2R_17334145_SNP [dm6]	C	G	2.840e^-4	0.958	INTRON mbl
2R	9771507	2R_9771507_SNP [dm3] 2R_13884002_SNP [dm6]	A	G	2.840e^-4	0.958	INTRON shot	TF binding site mE1_TFBS_cad
3L	9343825	3L_9343825_SNP [dm3] 3L_9350725_SNP [dm6]	T	C	2.842e^-4	0.958	SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
3L	13563991	3L_13563991_SNP [dm3] 3L_13570891_SNP [dm6]	A	G	2.843e^-4	0.958	INTRON bru-3
2R	18051354	2R_18051354_SNP [dm3] 2R_22163849_SNP [dm6]	G	T	2.844e^-4	0.958	NON_SYNONYMOUS_CODING CG34206 INTRON a
X	9129678	X_9129678_SNP [dm3] X_9235645_SNP [dm6]	T	C	2.847e^-4	0.958	DOWNSTREAM mir-4916 INTRON Ir8a
2R	16799940	2R_16799940_SNP [dm3] 2R_20912435_SNP [dm6]	T	C	2.848e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4632258	3L_4632258_SNP [dm3] 3L_4632258_SNP [dm6]	G	A	2.850e^-4	0.958	INTRON axo
2R	8908322	2R_8908322_SNP [dm3] 2R_13020817_SNP [dm6]	A	T	2.861e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
X	14441526	X_14441526_SNP [dm3] X_14547493_SNP [dm6]	A	G	2.871e^-4	0.958	INTERGENIC
2R	1377912	2R_1377912_SNP [dm3] 2R_5490407_SNP [dm6]	A	T	2.871e^-4	0.958	INTRON CG30440	transposable element FlyBase
X	20364009	X_20364009_INS [dm3] X_20492982_INS [dm6]	G	GG	2.885e^-4	0.958	INTRON RhoGAP19D
2R	18608057	2R_18608057_SNP [dm3] 2R_22720552_SNP [dm6]	G	A	2.898e^-4	0.958	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	21024450	2R_21024450_SNP [dm3] 2R_25136927_SNP [dm6]	T	C	2.900e^-4	0.958	INTRON lov
X	8340978	X_8340978_SNP [dm3] X_8446945_SNP [dm6]	C	T	2.917e^-4	0.958	DOWNSTREAM org-1 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5800918	2L_5800918_SNP [dm3] 2L_5800918_SNP [dm6]	C	T	2.919e^-4	0.958	SYNONYMOUS_CODING CG14005 UPSTREAM CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3457086	2L_3457086_SNP [dm3] 2L_3457086_SNP [dm6]	G	T	2.924e^-4	0.958	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	18604013	2R_18604013_SNP [dm3] 2R_22716508_SNP [dm6]	C	A	2.935e^-4	0.958	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	4340910	3R_4340910_SNP [dm3] 3R_8515188_SNP [dm6]	G	A	2.936e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27332472	3R_27332472_SNP [dm3] 3R_31506750_SNP [dm6]	G	A	2.939e^-4	0.958	UTR_3_PRIME mey	TF binding site BDTNP1_TFBS_prd
3R	23890549	3R_23890549_SNP [dm3] 3R_28064827_SNP [dm6]	G	C	2.940e^-4	0.958	INTRON CG34362
3L	22510960	3L_22510960_SNP [dm3] 3L_22517860_SNP [dm6]	G	T	2.942e^-4	0.958	DOWNSTREAM mir-957 INTERGENIC
3R	25246380	3R_25246380_SNP [dm3] 3R_29420658_SNP [dm6]	T	A	2.947e^-4	0.958	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19359581	2R_19359581_SNP [dm3] 2R_23472058_SNP [dm6]	A	G	2.949e^-4	0.958	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3L	14280891	3L_14280891_SNP [dm3] 3L_14287791_SNP [dm6]	A	G	2.959e^-4	0.958	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	7072879	2R_7072879_SNP [dm3] 2R_11185374_SNP [dm6]	C	T	2.972e^-4	0.958	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	16430239	2R_16430239_SNP [dm3] 2R_20542734_SNP [dm6]	G	A	2.973e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5146149	3L_5146149_SNP [dm3] 3L_5153049_SNP [dm6]	C	T	2.976e^-4	0.958	SYNONYMOUS_CODING Srp54k UPSTREAM Gen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11233623	X_11233623_SNP [dm3] X_11339590_SNP [dm6]	T	G	2.979e^-4	0.958	UPSTREAM Kap3 & 1 other INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18307948	3L_18307948_SNP [dm3] 3L_18314848_SNP [dm6]	C	T	2.983e^-4	0.958	INTERGENIC
2R	7967987	2R_7967987_SNP [dm3] 2R_12080482_SNP [dm6]	T	A	2.989e^-4	0.958	UPSTREAM CG8888 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	18459609	X_18459609_SNP [dm3] X_18565576_SNP [dm6]	G	A	2.991e^-4	0.958	UPSTREAM tRNA:CR32546 & 1 other INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	11752504	3R_11752504_SNP [dm3] 3R_15926782_SNP [dm6]	A	G	2.997e^-4	0.958	UTR_3_PRIME CG34276 DOWNSTREAM CG34276 INTRON CG4221
2R	8469659	2R_8469659_SNP [dm3] 2R_12582154_SNP [dm6]	G	C	3.007e^-4	0.958	INTRON Sin3A
3R	19444939	3R_19444939_SNP [dm3] 3R_23619217_SNP [dm6]	A	C	3.008e^-4	0.958	INTRON CG31145
2L	16366176	2L_16366176_SNP [dm3] 2L_16366176_SNP [dm6]	C	T	3.023e^-4	0.958	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8469811	2R_8469811_SNP [dm3] 2R_12582306_SNP [dm6]	G	A	3.028e^-4	0.958	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad
3R	24517930	3R_24517930_SNP [dm3] 3R_28692208_SNP [dm6]	C	T	3.035e^-4	0.958	INTRON CG9990
3L	13074028	3L_13074028_SNP [dm3] 3L_13080928_SNP [dm6]	C	T	3.047e^-4	0.958	DOWNSTREAM CR43652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19766038	3R_19766038_SNP [dm3] 3R_23940316_SNP [dm6]	T	A	3.047e^-4	0.958	INTRON Gdh
2L	10020716	2L_10020716_SNP [dm3] 2L_10020716_SNP [dm6]	G	A	3.051e^-4	0.958	INTERGENIC
2R	18532985	2R_18532985_SNP [dm3] 2R_22645480_SNP [dm6]	A	G	3.058e^-4	0.958	SYNONYMOUS_CODING CG2852	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	2044419	2R_2044419_SNP [dm3] 2R_6156914_SNP [dm6]	C	A	3.062e^-4	0.958	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9908164	X_9908164_SNP [dm3] X_10014131_SNP [dm6]	A	C	3.066e^-4	0.958	UTR_3_PRIME CG2990
3L	19154071	3L_19154071_SNP [dm3] 3L_19160971_SNP [dm6]	A	C	3.079e^-4	0.958	INTRON fz2
2R	4630632	2R_4630632_INS [dm3] 2R_8743127_INS [dm6]	C	CGC	3.080e^-4	0.958	DOWNSTREAM CR44277 INTRON CG8740
2R	6276695	2R_6276695_SNP [dm3] 2R_10389190_SNP [dm6]	A	T	3.102e^-4	0.958	INTRON CG42732
2R	2048322	2R_2048322_SNP [dm3] 2R_6160817_SNP [dm6]	A	T	3.104e^-4	0.958	UPSTREAM tRNA:R2:42Ac INTRON EcR
3R	11833999	3R_11833999_SNP [dm3] 3R_16008277_SNP [dm6]	C	A	3.106e^-4	0.958	UPSTREAM CR42839 & 1 other INTERGENIC
2L	9310931	2L_9310931_SNP [dm3] 2L_9310931_SNP [dm6]	T	C	3.118e^-4	0.958	INTERGENIC
2R	15144541	2R_15144541_SNP [dm3] 2R_19257036_SNP [dm6]	T	A	3.126e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	10723139	3L_10723139_SNP [dm3] 3L_10730039_SNP [dm6]	T	G	3.128e^-4	0.958	INTERGENIC
2R	19167140	2R_19167140_SNP [dm3] 2R_23279617_SNP [dm6]	C	T	3.129e^-4	0.958	INTERGENIC
2L	1843778	2L_1843778_SNP [dm3] 2L_1843778_SNP [dm6]	T	C	3.137e^-4	0.958	SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11930372	2R_11930372_SNP [dm3] 2R_16042867_SNP [dm6]	G	A	3.144e^-4	0.958	SYNONYMOUS_CODING SP2353
2R	8494612	2R_8494612_SNP [dm3] 2R_12607107_SNP [dm6]	A	G	3.153e^-4	0.958	INTRON Amph
3R	13871765	3R_13871765_SNP [dm3] 3R_18046043_SNP [dm6]	G	A	3.165e^-4	0.958	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2R	10511986	2R_10511986_SNP [dm3] 2R_14624481_SNP [dm6]	C	T	3.171e^-4	0.958	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15325291	2R_15325291_SNP [dm3] 2R_19437786_SNP [dm6]	T	C	3.175e^-4	0.958	UPSTREAM Fak INTRON Spt5
3R	16582174	3R_16582174_DEL [dm3] 3R_20756452_DEL [dm6]	TGAACTAAGTTGTGTAG...	T	3.177e^-4	0.958	UTR_3_PRIME CG42322 UPSTREAM Syp DOWNSTREAM CG42322 & 1 other	TF binding site mE1_TFBS_inv
2R	18608063	2R_18608063_SNP [dm3] 2R_22720558_SNP [dm6]	C	G	3.179e^-4	0.958	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	177565	2L_177565_SNP [dm3] 2L_177565_SNP [dm6]	C	A	3.194e^-4	0.958	INTRON spen
2R	18063374	2R_18063374_SNP [dm3] 2R_22175869_SNP [dm6]	A	T	3.195e^-4	0.958	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25920200	3R_25920200_SNP [dm3] 3R_30094478_SNP [dm6]	G	A	3.201e^-4	0.958	INTRON sima	TF binding site mE1_TFBS_inv
3R	25260993	3R_25260993_SNP [dm3] 3R_29435271_SNP [dm6]	A	G	3.203e^-4	0.958	INTRON Ptp99A
3R	18930272	3R_18930272_SNP [dm3] 3R_23104550_SNP [dm6]	T	A	3.204e^-4	0.958	INTRON CG13830
2R	21024748	2R_21024748_SNP [dm3] 2R_25137225_SNP [dm6]	A	T	3.207e^-4	0.958	INTRON lov
3L	10606719	3L_10606719_SNP [dm3] 3L_10613619_SNP [dm6]	C	A	3.208e^-4	0.958	INTERGENIC
3L	4861828	3L_4861828_SNP [dm3] 3L_4861828_SNP [dm6]	T	C	3.220e^-4	0.958	SYNONYMOUS_CODING CG17150
2R	16658190	2R_16658190_SNP [dm3] 2R_20770685_SNP [dm6]	A	G	3.222e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6259640	3L_6259640_SNP [dm3] 3L_6266540_SNP [dm6]	A	G	3.225e^-4	0.958	INTERGENIC
3L	10812707	3L_10812707_SNP [dm3] 3L_10819607_SNP [dm6]	T	C	3.226e^-4	0.958	INTERGENIC
3L	18300350	3L_18300350_SNP [dm3] 3L_18307250_SNP [dm6]	C	T	3.234e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22046962	2L_22046962_SNP [dm3] 2L_22046962_SNP [dm6]	T	A	3.243e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12817160	2R_12817160_SNP [dm3] 2R_16929655_SNP [dm6]	G	A	3.248e^-4	0.958	INTRON Pkc53E
2R	20265738	2R_20265738_SNP [dm3] 2R_24378215_SNP [dm6]	C	A	3.250e^-4	0.958	NON_SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
3R	19757903	3R_19757903_SNP [dm3] 3R_23932181_SNP [dm6]	C	T	3.255e^-4	0.958	SYNONYMOUS_CODING CG13599 UPSTREAM Rpt2 DOWNSTREAM RpS19b	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10690956	3L_10690956_SNP [dm3] 3L_10697856_SNP [dm6]	C	A	3.257e^-4	0.958	UPSTREAM NijA INTERGENIC
2R	20273103	2R_20273103_SNP [dm3] 2R_24385580_SNP [dm6]	G	A	3.258e^-4	0.958	INTRON mAChR-A
2R	16446689	2R_16446689_SNP [dm3] 2R_20559184_SNP [dm6]	C	T	3.262e^-4	0.958	UTR_3_PRIME lms & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	15404327	3L_15404327_SNP [dm3] 3L_15411227_SNP [dm6]	T	A	3.266e^-4	0.958	INTERGENIC
X	2820893	X_2820893_SNP [dm3] X_2926860_SNP [dm6]	T	C	3.270e^-4	0.958	INTRON kirre & 1 other
3L	22548856	3L_22548856_SNP [dm3] 3L_22555756_SNP [dm6]	G	A	3.271e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	20275800	2R_20275800_SNP [dm3] 2R_24388277_SNP [dm6]	T	G	3.273e^-4	0.958	INTRON mAChR-A
3R	13455650	3R_13455650_INS [dm3] 3R_17629928_INS [dm6]	T	TC	3.278e^-4	0.958	UPSTREAM tRNA:V4:90C & 1 other DOWNSTREAM CG14325 INTERGENIC
2L	4098871	2L_4098871_SNP [dm3] 2L_4098871_SNP [dm6]	T	G	3.290e^-4	0.958	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17469030	2R_17469030_SNP [dm3] 2R_21581525_SNP [dm6]	A	C	3.295e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16590993	2L_16590993_SNP [dm3] 2L_16590993_SNP [dm6]	T	C	3.296e^-4	0.958	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2057051	2R_2057051_SNP [dm3] 2R_6169546_SNP [dm6]	C	T	3.297e^-4	0.958	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10796870	3L_10796870_SNP [dm3] 3L_10803770_SNP [dm6]	A	G	3.298e^-4	0.958	DOWNSTREAM CR44347 INTERGENIC
2L	6900012	2L_6900012_SNP [dm3] 2L_6900012_SNP [dm6]	G	T	3.301e^-4	0.958	INTRON Nlg2
3R	21443111	3R_21443111_SNP [dm3] 3R_25617389_SNP [dm6]	C	T	3.302e^-4	0.958	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1
2R	18900136	2R_18900136_SNP [dm3] 2R_23012613_SNP [dm6]	C	G	3.305e^-4	0.958	SYNONYMOUS_CODING CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo
3L	7991011	3L_7991011_SNP [dm3] 3L_7997911_SNP [dm6]	C	G	3.306e^-4	0.958	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	7064441	3L_7064441_SNP [dm3] 3L_7071341_SNP [dm6]	A	G	3.306e^-4	0.958	INTRON CG8641
3L	9427616	3L_9427616_SNP [dm3] 3L_9434516_SNP [dm6]	T	G	3.312e^-4	0.958	UTR_3_PRIME CG42526 INTRON MTF-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18307923	3L_18307923_SNP [dm3] 3L_18314823_SNP [dm6]	A	G	3.325e^-4	0.958	INTERGENIC
3L	1179083	3L_1179083_SNP [dm3] 3L_1179083_SNP [dm6]	T	A	3.329e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21026704	3R_21026704_INS [dm3] 3R_25200982_INS [dm6]	A	AAAACA	3.332e^-4	0.958	INTRON Cad96Ca & 1 other
3L	9540803	3L_9540803_SNP [dm3] 3L_9547703_SNP [dm6]	C	T	3.337e^-4	0.958	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7553466	X_7553466_SNP [dm3] X_7659433_SNP [dm6]	C	T	3.338e^-4	0.958	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13640485	3L_13640485_SNP [dm3] 3L_13647385_SNP [dm6]	C	A	3.355e^-4	0.958	INTRON bru-3
3R	23038879	3R_23038879_SNP [dm3] 3R_27213157_SNP [dm6]	T	C	3.357e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16590998	2L_16590998_SNP [dm3] 2L_16590998_SNP [dm6]	T	C	3.359e^-4	0.958	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14737147	X_14737147_SNP [dm3] X_14843114_SNP [dm6]	T	C	3.361e^-4	0.958	SYNONYMOUS_CODING CG12539 INTRON Flo2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15850257	3R_15850257_SNP [dm3] 3R_20024535_SNP [dm6]	T	C	3.369e^-4	0.958	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3L	2469405	3L_2469405_SNP [dm3] 3L_2469405_SNP [dm6]	A	G	3.390e^-4	0.958	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13939027	2R_13939027_SNP [dm3] 2R_18051522_SNP [dm6]	C	G	3.396e^-4	0.958	INTRON Muc55B
2L	11970077	2L_11970077_SNP [dm3] 2L_11970077_SNP [dm6]	T	C	3.400e^-4	0.958	INTRON CR43314	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8418129	3L_8418129_SNP [dm3] 3L_8425029_SNP [dm6]	C	T	3.406e^-4	0.958	UTR_5_PRIME Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8438786	2R_8438786_SNP [dm3] 2R_12551281_SNP [dm6]	T	G	3.410e^-4	0.958	INTRON fra
3R	16490685	3R_16490685_SNP [dm3] 3R_20664963_SNP [dm6]	A	C	3.416e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6121985	2L_6121985_SNP [dm3] 2L_6121985_SNP [dm6]	G	T	3.419e^-4	0.958	INTRON stai
3R	26095282	3R_26095282_SNP [dm3] 3R_30269560_SNP [dm6]	C	A	3.427e^-4	0.958	INTERGENIC
3L	9914417	3L_9914417_SNP [dm3] 3L_9921317_SNP [dm6]	C	T	3.430e^-4	0.958	INTRON CG34356
2R	20265927	2R_20265927_SNP [dm3] 2R_24378404_SNP [dm6]	C	T	3.439e^-4	0.958	SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
3R	18862996	3R_18862996_SNP [dm3] 3R_23037274_SNP [dm6]	G	C	3.449e^-4	0.958	INTERGENIC
2L	6786721	2L_6786721_SNP [dm3] 2L_6786721_SNP [dm6]	T	G	3.455e^-4	0.958	UTR_5_PRIME nrv1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	21953881	2L_21953881_SNP [dm3] 2L_21953881_SNP [dm6]	A	G	3.461e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22423068	2L_22423068_SNP [dm3] 2L_22530336_SNP [dm6]	T	A	3.464e^-4	0.958	INTERGENIC
3L	18311289	3L_18311289_DEL [dm3] 3L_18318189_DEL [dm6]	ATGG	A	3.464e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8754886	3L_8754886_SNP [dm3] 3L_8761786_SNP [dm6]	G	A	3.464e^-4	0.958	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_inv
2R	18013852	2R_18013852_SNP [dm3] 2R_22126347_SNP [dm6]	G	A	3.472e^-4	0.958	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3032412	3L_3032412_SNP [dm3] 3L_3032412_SNP [dm6]	T	C	3.473e^-4	0.958	INTERGENIC
3L	12134868	3L_12134868_SNP [dm3] 3L_12141768_SNP [dm6]	T	C	3.476e^-4	0.958	INTRON RhoGAP68F
3R	10350699	3R_10350699_INS [dm3] 3R_14524977_INS [dm6]	G	GAG	3.497e^-4	0.958	INTRON Pde6
3L	13222661	3L_13222661_SNP [dm3] 3L_13229561_SNP [dm6]	C	T	3.498e^-4	0.958	INTRON caps	TF binding site BDTNP1_TFBS_dl
3L	6984893	3L_6984893_SNP [dm3] 3L_6991793_SNP [dm6]	G	A	3.498e^-4	0.958	SYNONYMOUS_CODING bin
3L	8268096	3L_8268096_SNP [dm3] 3L_8274996_SNP [dm6]	G	C	3.501e^-4	0.958	INTRON Dscam4
2R	21131244	2R_21131244_SNP [dm3] 2R_25243721_SNP [dm6]	C	T	3.505e^-4	0.958	UTR_5_PRIME CG9380	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	17238516	2R_17238516_SNP [dm3] 2R_21351011_SNP [dm6]	C	G	3.506e^-4	0.958	UPSTREAM CG17974 INTERGENIC
2R	2050564	2R_2050564_SNP [dm3] 2R_6163059_SNP [dm6]	A	T	3.521e^-4	0.958	UPSTREAM tRNA:N5:42Ac & 1 other DOWNSTREAM tRNA:N5:42Ab & 1 other INTRON EcR	TF binding site mE1_TFBS_cad
2L	5056262	2L_5056262_SNP [dm3] 2L_5056262_SNP [dm6]	T	G	3.526e^-4	0.958	SYNONYMOUS_CODING CG31918 DOWNSTREAM His3.3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11969972	2L_11969972_SNP [dm3] 2L_11969972_SNP [dm6]	T	C	3.530e^-4	0.958	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	15772288	X_15772288_SNP [dm3] X_15878255_SNP [dm6]	C	T	3.530e^-4	0.958	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14420390	2R_14420390_SNP [dm3] 2R_18532885_SNP [dm6]	T	C	3.533e^-4	0.958	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6148897	2R_6148897_SNP [dm3] 2R_10261392_SNP [dm6]	A	G	3.539e^-4	0.958	DOWNSTREAM CG12911 EXON CR30009
2R	14232026	2R_14232026_SNP [dm3] 2R_18344521_SNP [dm6]	C	T	3.544e^-4	0.958	INTRON sbb
X	17952328	X_17952328_SNP [dm3] X_18058295_SNP [dm6]	T	C	3.549e^-4	0.958	INTRON Sh
2R	10670427	2R_10670427_SNP [dm3] 2R_14782922_SNP [dm6]	G	A	3.551e^-4	0.958	INTRON kn
2R	21068338	2R_21068338_DEL [dm3] 2R_25180815_DEL [dm6]	GAAGTGTATTAAGATTATGC...	T	3.558e^-4	0.958	INTERGENIC
2R	5897100	2R_5897100_SNP [dm3] 2R_10009595_SNP [dm6]	T	A	3.563e^-4	0.958	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi
2L	8836514	2L_8836514_SNP [dm3] 2L_8836514_SNP [dm6]	C	A	3.565e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1672610	2R_1672610_SNP [dm3] 2R_5785105_SNP [dm6]	T	C	3.575e^-4	0.958	INTERGENIC	transposable element FlyBase
2R	19359600	2R_19359600_SNP [dm3] 2R_23472077_SNP [dm6]	A	C	3.577e^-4	0.958	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
X	6878465	X_6878465_SNP [dm3] X_6984432_SNP [dm6]	G	C	3.579e^-4	0.958	UTR_5_PRIME ogre INTRON ogre EXON CR44084	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20462262	2R_20462262_SNP [dm3] 2R_24574739_SNP [dm6]	T	C	3.583e^-4	0.958	UTR_5_PRIME Start1 DOWNSTREAM CG3511 INTRON Start1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26180188	3R_26180188_INS [dm3] 3R_30354466_INS [dm6]	C	CAGTTATAAC	3.585e^-4	0.958	INTRON hdc
2R	4626181	2R_4626181_SNP [dm3] 2R_8738676_SNP [dm6]	G	A	3.587e^-4	0.958	DOWNSTREAM CG42615 INTRON CG8740
3L	18298997	3L_18298997_SNP [dm3] 3L_18305897_SNP [dm6]	C	T	3.587e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20325768	X_20325768_SNP [dm3] X_20454741_SNP [dm6]	C	T	3.604e^-4	0.958	INTRON CG32506	TF binding site mE1_TFBS_chinmo
3L	11456985	3L_11456985_SNP [dm3] 3L_11463885_SNP [dm6]	A	G	3.614e^-4	0.958	SYNONYMOUS_CODING CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4104346	3L_4104346_SNP [dm3] 3L_4104346_SNP [dm6]	C	T	3.622e^-4	0.958	SYNONYMOUS_CODING Fit1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11969991	2L_11969991_SNP [dm3] 2L_11969991_SNP [dm6]	G	C	3.632e^-4	0.958	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10812693	3L_10812693_SNP [dm3] 3L_10819593_SNP [dm6]	C	A	3.640e^-4	0.958	INTERGENIC
3R	27216257	3R_27216257_SNP [dm3] 3R_31390535_SNP [dm6]	G	A	3.643e^-4	0.958	INTRON CG1607	TF binding site mE1_TFBS_cad
2R	2051501	2R_2051501_SNP [dm3] 2R_6163996_SNP [dm6]	A	G	3.648e^-4	0.958	DOWNSTREAM tRNA:K2:42Ab INTRON EcR	transposable element FlyBase
3L	18311296	3L_18311296_SNP [dm3] 3L_18318196_SNP [dm6]	A	T	3.667e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20232371	3R_20232371_SNP [dm3] 3R_24406649_SNP [dm6]	C	T	3.668e^-4	0.958	INTRON nAChRalpha1
2L	18335526	2L_18335526_SNP [dm3] 2L_18335526_SNP [dm6]	G	A	3.682e^-4	0.958	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2R	8455371	2R_8455371_SNP [dm3] 2R_12567866_SNP [dm6]	G	T	3.687e^-4	0.958	INTRON Cyp301a1
3L	6298143	3L_6298143_SNP [dm3] 3L_6305043_SNP [dm6]	C	T	3.688e^-4	0.958	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
3R	26044976	3R_26044976_SNP [dm3] 3R_30219254_SNP [dm6]	G	T	3.692e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	21073512	2R_21073512_SNP [dm3] 2R_25185989_SNP [dm6]	T	C	3.699e^-4	0.958	NON_SYNONYMOUS_CODING CG9380 INTRON CG9380
2L	6809288	2L_6809288_SNP [dm3] 2L_6809288_SNP [dm6]	A	G	3.701e^-4	0.958	INTERGENIC
3R	14924885	3R_14924885_SNP [dm3] 3R_19099163_SNP [dm6]	G	A	3.702e^-4	0.958	INTRON CG6040	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17941963	2R_17941963_SNP [dm3] 2R_22054458_SNP [dm6]	G	T	3.719e^-4	0.958	INTERGENIC
2R	20999172	2R_20999172_SNP [dm3] 2R_25111649_SNP [dm6]	G	A	3.720e^-4	0.958	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8808309	3L_8808309_SNP [dm3] 3L_8815209_SNP [dm6]	A	T	3.721e^-4	0.958	INTERGENIC
3L	2355330	3L_2355330_SNP [dm3] 3L_2355330_SNP [dm6]	C	T	3.723e^-4	0.958	INTERGENIC
X	8933031	X_8933031_SNP [dm3] X_9038998_SNP [dm6]	C	T	3.726e^-4	0.958	UPSTREAM CG42388 INTRON CR43836 & 1 other
2L	10232558	2L_10232558_SNP [dm3] 2L_10232558_SNP [dm6]	G	A	3.729e^-4	0.958	UTR_5_PRIME eEF1delta UPSTREAM CG5694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12461954	2L_12461954_SNP [dm3] 2L_12461954_SNP [dm6]	C	G	3.731e^-4	0.958	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	21021988	2R_21021988_SNP [dm3] 2R_25134465_SNP [dm6]	A	T	3.731e^-4	0.958	INTRON lov	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	20599727	2L_20599727_SNP [dm3] 2L_20599727_SNP [dm6]	A	G	3.745e^-4	0.958	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13840200	3L_13840200_SNP [dm3] 3L_13847100_SNP [dm6]	T	C	3.763e^-4	0.958	SYNONYMOUS_CODING Hml
3L	4103076	3L_4103076_SNP [dm3] 3L_4103076_SNP [dm6]	G	T	3.783e^-4	0.958	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8012411	2L_8012411_DEL [dm3] 2L_8012411_DEL [dm6]	TT	T	3.789e^-4	0.958	UPSTREAM Tg INTRON Tg
2L	12723116	2L_12723116_SNP [dm3] 2L_12723116_SNP [dm6]	G	A	3.795e^-4	0.958	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	19444957	3R_19444957_DEL [dm3] 3R_23619235_DEL [dm6]	TT	T	3.810e^-4	0.958	INTRON CG31145
3L	3864998	3L_3864998_SNP [dm3] 3L_3864998_SNP [dm6]	C	T	3.812e^-4	0.958	UPSTREAM CR45379 INTERGENIC
2R	7911972	2R_7911972_SNP [dm3] 2R_12024467_SNP [dm6]	T	C	3.812e^-4	0.958	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	21068619	2R_21068619_SNP [dm3] 2R_25181096_SNP [dm6]	G	A	3.817e^-4	0.958	INTERGENIC
2L	22960811	2L_22960811_DEL [dm3] 2L_23068079_DEL [dm6]	AGCAAAACATGTAACT...	A	3.823e^-4	0.958	UPSTREAM CR43242
X	20364170	X_20364170_DEL [dm3] X_20493143_DEL [dm6]	ACCA	A	3.828e^-4	0.958	INTRON RhoGAP19D
3R	11646375	3R_11646375_SNP [dm3] 3R_15820653_SNP [dm6]	A	G	3.829e^-4	0.958	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad
X	2346620	X_2346620_SNP [dm3] X_2452587_SNP [dm6]	T	A	3.830e^-4	0.958	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17902750	3R_17902750_SNP [dm3] 3R_22077028_SNP [dm6]	T	G	3.841e^-4	0.958	INTRON how	TF binding site mE1_TFBS_kn
3L	8808300	3L_8808300_SNP [dm3] 3L_8815200_SNP [dm6]	C	T	3.846e^-4	0.958	INTERGENIC
3L	8197455	3L_8197455_SNP [dm3] 3L_8204355_SNP [dm6]	C	T	3.847e^-4	0.958	INTERGENIC
3R	15344470	3R_15344470_SNP [dm3] 3R_19518748_SNP [dm6]	C	G	3.852e^-4	0.958	INTRON Dys
3R	16574761	3R_16574761_SNP [dm3] 3R_20749039_SNP [dm6]	C	A	3.858e^-4	0.958	UTR_5_PRIME Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18377412	2L_18377412_SNP [dm3] 2L_18377412_SNP [dm6]	T	C	3.862e^-4	0.958	INTRON Fas3
2R	18567772	2R_18567772_SNP [dm3] 2R_22680267_SNP [dm6]	T	C	3.862e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11969983	2L_11969983_SNP [dm3] 2L_11969983_SNP [dm6]	T	A	3.863e^-4	0.958	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8513423	2R_8513423_SNP [dm3] 2R_12625918_SNP [dm6]	A	G	3.865e^-4	0.958	UTR_5_PRIME CG17760 DOWNSTREAM CG30054
3L	10916931	3L_10916931_SNP [dm3] 3L_10923831_SNP [dm6]	G	A	3.866e^-4	0.958	INTERGENIC
2R	8490319	2R_8490319_SNP [dm3] 2R_12602814_SNP [dm6]	A	T	3.872e^-4	0.958	INTRON Amph
2R	21047090	2R_21047090_SNP [dm3] 2R_25159567_SNP [dm6]	A	C	3.880e^-4	0.958	INTERGENIC
2R	12469316	2R_12469316_SNP [dm3] 2R_16581811_SNP [dm6]	T	C	3.886e^-4	0.958	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13442091	3L_13442091_SNP [dm3] 3L_13448991_SNP [dm6]	A	C	3.886e^-4	0.958	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
3R	17771465	3R_17771465_SNP [dm3] 3R_21945743_SNP [dm6]	T	C	3.887e^-4	0.958	INTERGENIC
2R	21049754	2R_21049754_SNP [dm3] 2R_25162231_SNP [dm6]	T	C	3.890e^-4	0.958	INTERGENIC
3R	27336587	3R_27336587_SNP [dm3] 3R_31510865_SNP [dm6]	G	A	3.890e^-4	0.958	INTERGENIC
2L	4934388	2L_4934388_SNP [dm3] 2L_4934388_SNP [dm6]	A	G	3.908e^-4	0.958	SPLICE_SITE_REGION hoe2 INTRON hoe2
2L	12077500	2L_12077500_SNP [dm3] 2L_12077500_SNP [dm6]	A	T	3.912e^-4	0.958	SYNONYMOUS_CODING CG14947	regulatory region REDfly_CRMs
2L	14777813	2L_14777813_SNP [dm3] 2L_14777813_SNP [dm6]	T	A	3.914e^-4	0.958	INTERGENIC
2R	16718587	2R_16718587_SNP [dm3] 2R_20831082_SNP [dm6]	T	A	3.920e^-4	0.958	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_ttk
2R	13219236	2R_13219236_SNP [dm3] 2R_17331731_SNP [dm6]	G	C	3.920e^-4	0.958	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3R	20232393	3R_20232393_SNP [dm3] 3R_24406671_SNP [dm6]	A	T	3.929e^-4	0.958	INTRON nAChRalpha1
3L	8808294	3L_8808294_SNP [dm3] 3L_8815194_SNP [dm6]	T	C	3.932e^-4	0.958	INTERGENIC
3L	13839133	3L_13839133_SNP [dm3] 3L_13846033_SNP [dm6]	A	T	3.943e^-4	0.958	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8514375	2R_8514375_SNP [dm3] 2R_12626870_SNP [dm6]	A	G	3.950e^-4	0.958	SYNONYMOUS_CODING CG17760
3L	18481931	3L_18481931_SNP [dm3] 3L_18488831_SNP [dm6]	C	T	3.959e^-4	0.958	UTR_5_PRIME AstC-R2	TF binding site mE1_TFBS_cad
2L	10234368	2L_10234368_SNP [dm3] 2L_10234368_SNP [dm6]	A	T	3.965e^-4	0.958	UTR_3_PRIME eEF1delta DOWNSTREAM mthl15
2L	12306675	2L_12306675_SNP [dm3] 2L_12306675_SNP [dm6]	A	G	3.967e^-4	0.958	INTRON aret
3L	13761182	3L_13761182_SNP [dm3] 3L_13768082_SNP [dm6]	A	G	3.967e^-4	0.958	INTRON bru-3
2L	6786696	2L_6786696_SNP [dm3] 2L_6786696_SNP [dm6]	A	G	3.975e^-4	0.958	UTR_5_PRIME nrv1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20325137	2R_20325137_SNP [dm3] 2R_24437614_SNP [dm6]	T	C	3.991e^-4	0.958	INTERGENIC
2R	18607997	2R_18607997_SNP [dm3] 2R_22720492_SNP [dm6]	T	C	3.999e^-4	0.958	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12048215	2L_12048215_SNP [dm3] 2L_12048215_SNP [dm6]	T	C	3.999e^-4	0.958	SYNONYMOUS_CODING Plzf	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4018597	2L_4018597_SNP [dm3] 2L_4018597_SNP [dm6]	A	C	4.000e^-4	0.958	INTERGENIC
3L	13442106	3L_13442106_SNP [dm3] 3L_13449006_SNP [dm6]	G	A	4.033e^-4	0.958	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
2L	15097008	2L_15097008_SNP [dm3] 2L_15097008_SNP [dm6]	T	G	4.040e^-4	0.958	DOWNSTREAM CG15270 INTERGENIC
2R	18605375	2R_18605375_SNP [dm3] 2R_22717870_SNP [dm6]	T	C	4.048e^-4	0.958	SPLICE_SITE_REGION jbug DOWNSTREAM CG30268 INTRON jbug	TF binding site mE1_TFBS_chinmo
3L	8808266	3L_8808266_SNP [dm3] 3L_8815166_SNP [dm6]	T	C	4.051e^-4	0.958	INTERGENIC
2L	15097069	2L_15097069_SNP [dm3] 2L_15097069_SNP [dm6]	T	C	4.051e^-4	0.958	DOWNSTREAM CG15270 INTERGENIC
2L	21730265	2L_21730265_SNP [dm3] 2L_21730265_SNP [dm6]	A	G	4.055e^-4	0.958	INTERGENIC	transposable element FlyBase
2R	14742330	2R_14742330_SNP [dm3] 2R_18854825_SNP [dm6]	T	C	4.057e^-4	0.958	DOWNSTREAM Jheh2 INTRON Jheh1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
2R	17970106	2R_17970106_SNP [dm3] 2R_22082601_SNP [dm6]	A	G	4.068e^-4	0.958	SYNONYMOUS_CODING Synj
2R	20265703	2R_20265703_SNP [dm3] 2R_24378180_SNP [dm6]	C	T	4.075e^-4	0.958	SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
2L	8708104	2L_8708104_SNP [dm3] 2L_8708104_SNP [dm6]	G	A	4.082e^-4	0.958	DOWNSTREAM CG9314 INTRON Hnf4
2L	21332749	2L_21332749_SNP [dm3] 2L_21332749_SNP [dm6]	T	C	4.092e^-4	0.958	INTRON dimm
3R	12747774	3R_12747774_SNP [dm3] 3R_16922052_SNP [dm6]	G	A	4.096e^-4	0.958	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7377580	2R_7377580_SNP [dm3] 2R_11490075_SNP [dm6]	T	G	4.096e^-4	0.958	INTRON inv
3L	1604192	3L_1604192_SNP [dm3] 3L_1604192_SNP [dm6]	C	A	4.106e^-4	0.958	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
X	15516221	X_15516221_SNP [dm3] X_15622188_SNP [dm6]	C	T	4.109e^-4	0.958	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16847981	3L_16847981_SNP [dm3] 3L_16854881_SNP [dm6]	A	T	4.128e^-4	0.958	INTRON Rh4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13838556	3L_13838556_SNP [dm3] 3L_13845456_SNP [dm6]	C	G	4.131e^-4	0.958	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	9304713	2L_9304713_SNP [dm3] 2L_9304713_SNP [dm6]	T	C	4.132e^-4	0.958	EXON CR42844
3L	6997031	3L_6997031_SNP [dm3] 3L_7003931_SNP [dm6]	A	G	4.134e^-4	0.958	INTRON Mp
2L	16660971	2L_16660971_SNP [dm3] 2L_16660971_SNP [dm6]	G	T	4.136e^-4	0.958	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5710910	2L_5710910_SNP [dm3] 2L_5710910_SNP [dm6]	G	A	4.145e^-4	0.958	UPSTREAM CG7236 INTRON CG7236
3L	10916943	3L_10916943_SNP [dm3] 3L_10923843_SNP [dm6]	T	A	4.151e^-4	0.958	INTERGENIC
3R	25672751	3R_25672751_SNP [dm3] 3R_29847029_SNP [dm6]	G	A	4.152e^-4	0.958	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20277939	2R_20277939_SNP [dm3] 2R_24390416_SNP [dm6]	A	C	4.157e^-4	0.958	UPSTREAM CR44813 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14512697	2R_14512697_SNP [dm3] 2R_18625192_SNP [dm6]	T	A	4.160e^-4	0.958	UPSTREAM Sec6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26936085	3R_26936085_SNP [dm3] 3R_31110363_SNP [dm6]	A	G	4.177e^-4	0.958	INTERGENIC
2R	2045804	2R_2045804_SNP [dm3] 2R_6158299_SNP [dm6]	T	C	4.182e^-4	0.958	UPSTREAM CR43904 INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3463115	2L_3463115_SNP [dm3] 2L_3463115_SNP [dm6]	A	C	4.189e^-4	0.958	UTR_3_PRIME msl-2 DOWNSTREAM mir-4971
2L	7746121	2L_7746121_SNP [dm3] 2L_7746121_SNP [dm6]	T	A	4.215e^-4	0.958	INTERGENIC
3R	4051474	3R_4051474_SNP [dm3] 3R_8225752_SNP [dm6]	G	A	4.229e^-4	0.958	EXON CR45551	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25150950	3R_25150950_SNP [dm3] 3R_29325228_SNP [dm6]	T	A	4.240e^-4	0.958	INTERGENIC
2L	15097131	2L_15097131_SNP [dm3] 2L_15097131_SNP [dm6]	A	T	4.247e^-4	0.958	DOWNSTREAM CG15270 INTERGENIC
3R	18901343	3R_18901343_SNP [dm3] 3R_23075621_SNP [dm6]	G	A	4.247e^-4	0.958	INTRON CG13830
2L	12181145	2L_12181145_SNP [dm3] 2L_12181145_SNP [dm6]	T	A	4.251e^-4	0.958	INTRON aret
2R	15330449	2R_15330449_SNP [dm3] 2R_19442944_SNP [dm6]	C	T	4.257e^-4	0.958	SYNONYMOUS_CODING RpL11 UPSTREAM snoRNA:Psi28S-2444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	14232013	2R_14232013_SNP [dm3] 2R_18344508_SNP [dm6]	A	G	4.257e^-4	0.958	INTRON sbb
3R	21585960	3R_21585960_SNP [dm3] 3R_25760238_SNP [dm6]	T	G	4.261e^-4	0.958	UTR_5_PRIME LpR1 INTRON LpR1
2L	20599764	2L_20599764_SNP [dm3] 2L_20599764_SNP [dm6]	C	T	4.269e^-4	0.958	INTRON CR44909	TF binding site BDTNP1_TFBS_twi
2L	6422880	2L_6422880_SNP [dm3] 2L_6422880_SNP [dm6]	G	A	4.271e^-4	0.958	INTRON Tig
2L	21858998	2L_21858998_SNP [dm3] 2L_21858998_SNP [dm6]	C	T	4.271e^-4	0.958	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14232022	2R_14232022_INS [dm3] 2R_18344517_INS [dm6]	A	AA	4.297e^-4	0.958	INTRON sbb
3R	22999556	3R_22999556_SNP [dm3] 3R_27173834_SNP [dm6]	A	G	4.315e^-4	0.958	INTRON Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20998983	2R_20998983_SNP [dm3] 2R_25111460_SNP [dm6]	T	C	4.323e^-4	0.958	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20265497	2R_20265497_SNP [dm3] 2R_24377974_SNP [dm6]	G	A	4.335e^-4	0.958	UTR_5_PRIME CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10350697	3R_10350697_SNP [dm3] 3R_14524975_SNP [dm6]	A	G	4.337e^-4	0.958	INTRON Pde6
2L	12384898	2L_12384898_SNP [dm3] 2L_12384898_SNP [dm6]	A	G	4.340e^-4	0.958	INTRON bru-2
2R	21027134	2R_21027134_DEL [dm3] 2R_25139611_DEL [dm6]	TC	T	4.342e^-4	0.958	UTR_5_PRIME lov & 1 other
2R	18013825	2R_18013825_SNP [dm3] 2R_22126320_SNP [dm6]	A	C	4.353e^-4	0.958	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13455727	3R_13455727_SNP [dm3] 3R_17630005_SNP [dm6]	G	A	4.355e^-4	0.958	UPSTREAM tRNA:V4:90C & 1 other DOWNSTREAM CG14325 INTERGENIC
2L	10456955	2L_10456955_SNP [dm3] 2L_10456955_SNP [dm6]	T	C	4.355e^-4	0.958	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18158194	2R_18158194_SNP [dm3] 2R_22270689_SNP [dm6]	G	T	4.366e^-4	0.958	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	2049812	2R_2049812_SNP [dm3] 2R_6162307_SNP [dm6]	A	T	4.373e^-4	0.958	UPSTREAM tRNA:N5:42Aa & 1 other DOWNSTREAM tRNA:R2:42Ac & 2 others INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10420226	3R_10420226_SNP [dm3] 3R_14594504_SNP [dm6]	T	C	4.373e^-4	0.958	INTRON stumps	regulatory region REDfly_CRMs
3R	10543041	3R_10543041_SNP [dm3] 3R_14717319_SNP [dm6]	C	T	4.373e^-4	0.958	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	3801754	2R_3801754_SNP [dm3] 2R_7914249_SNP [dm6]	T	C	4.381e^-4	0.958	DOWNSTREAM CG12159 INTRON CG30377
2R	17482207	2R_17482207_SNP [dm3] 2R_21594702_SNP [dm6]	T	C	4.384e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2337253	3L_2337253_SNP [dm3] 3L_2337253_SNP [dm6]	G	A	4.386e^-4	0.958	INTRON MsR1	TF binding site BDTNP1_TFBS_prd
2R	16358148	2R_16358148_SNP [dm3] 2R_20470643_SNP [dm6]	G	C	4.388e^-4	0.958	UTR_3_PRIME CG12484 INTRON CG12484
2R	8888254	2R_8888254_SNP [dm3] 2R_13000749_SNP [dm6]	A	G	4.405e^-4	0.958	INTRON Su_z_2
2L	22362083	2L_22362083_SNP [dm3] 2L_22362083_SNP [dm6]	C	T	4.406e^-4	0.958	INTRON CG17018
3R	10420212	3R_10420212_SNP [dm3] 3R_14594490_SNP [dm6]	A	T	4.411e^-4	0.958	INTRON stumps	regulatory region REDfly_CRMs
X	15669706	X_15669706_SNP [dm3] X_15775673_SNP [dm6]	C	T	4.421e^-4	0.958	SYNONYMOUS_CODING CG43672
2R	4199798	2R_4199798_SNP [dm3] 2R_8312293_SNP [dm6]	T	A	4.427e^-4	0.958	DOWNSTREAM CR44450 INTERGENIC
2R	21062377	2R_21062377_SNP [dm3] 2R_25174854_SNP [dm6]	G	A	4.428e^-4	0.958	UPSTREAM PebII DOWNSTREAM Peb INTERGENIC	transposable element FlyBase
X	19575508	X_19575508_DEL [dm3] X_19681475_DEL [dm6]	TCT	T	4.435e^-4	0.958	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	8488759	2R_8488759_SNP [dm3] 2R_12601254_SNP [dm6]	C	A	4.437e^-4	0.958	INTRON Amph
2L	10457062	2L_10457062_INS [dm3] 2L_10457062_INS [dm6]	T	CTA	4.443e^-4	0.958	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12910816	3L_12910816_SNP [dm3] 3L_12917716_SNP [dm6]	C	G	4.452e^-4	0.958	INTERGENIC
2L	3227101	2L_3227101_SNP [dm3] 2L_3227101_SNP [dm6]	A	T	4.458e^-4	0.958	INTERGENIC
3L	12888776	3L_12888776_SNP [dm3] 3L_12895676_SNP [dm6]	T	C	4.458e^-4	0.958	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13835179	3L_13835179_SNP [dm3] 3L_13842079_SNP [dm6]	A	C	4.461e^-4	0.958	NON_SYNONYMOUS_CODING CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
2R	8609724	2R_8609724_SNP [dm3] 2R_12722219_SNP [dm6]	T	C	4.462e^-4	0.958	INTRON CG42663
X	5844122	X_5844122_SNP [dm3] X_5950089_SNP [dm6]	C	A	4.463e^-4	0.958	NON_SYNONYMOUS_CODING CG6041 UPSTREAM CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8635766	X_8635766_SNP [dm3] X_8741733_SNP [dm6]	G	T	4.475e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11923475	3L_11923475_SNP [dm3] 3L_11930375_SNP [dm6]	G	A	4.476e^-4	0.958	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27281756	3R_27281756_SNP [dm3] 3R_31456034_SNP [dm6]	G	T	4.483e^-4	0.958	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12425020	3L_12425020_SNP [dm3] 3L_12431920_SNP [dm6]	T	G	4.502e^-4	0.958	INTRON toe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16590974	2L_16590974_SNP [dm3] 2L_16590974_SNP [dm6]	T	C	4.502e^-4	0.958	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2048372	2R_2048372_SNP [dm3] 2R_6160867_SNP [dm6]	C	T	4.539e^-4	0.958	UPSTREAM tRNA:R2:42Ac INTRON EcR
2L	16562045	2L_16562045_SNP [dm3] 2L_16562045_SNP [dm6]	A	T	4.545e^-4	0.958	INTRON CG42389
2L	4018644	2L_4018644_SNP [dm3] 2L_4018644_SNP [dm6]	T	C	4.547e^-4	0.958	INTERGENIC
3L	12888764	3L_12888764_SNP [dm3] 3L_12895664_SNP [dm6]	T	A	4.564e^-4	0.958	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6531288	2R_6531288_SNP [dm3] 2R_10643783_SNP [dm6]	C	T	4.566e^-4	0.958	INTRON Git	TF binding site mE1_TFBS_HSA
X	9109314	X_9109314_SNP [dm3] X_9215281_SNP [dm6]	T	C	4.568e^-4	0.958	SYNONYMOUS_CODING Obp8a UPSTREAM CG15368
2L	21730760	2L_21730760_SNP [dm3] 2L_21730760_SNP [dm6]	G	C	4.570e^-4	0.958	INTERGENIC	transposable element FlyBase
3L	2617767	3L_2617767_SNP [dm3] 3L_2617767_SNP [dm6]	T	A	4.572e^-4	0.958	INTRON Pxn
3R	25738171	3R_25738171_SNP [dm3] 3R_29912449_SNP [dm6]	A	C	4.573e^-4	0.958	DOWNSTREAM Capa INTRON CG31036
2L	7844231	2L_7844231_SNP [dm3] 2L_7844231_SNP [dm6]	T	A	4.578e^-4	0.958	DOWNSTREAM CG14535 INTERGENIC
3L	12164399	3L_12164399_SNP [dm3] 3L_12171299_SNP [dm6]	G	A	4.579e^-4	0.958	INTRON Rh7
2R	18542599	2R_18542599_SNP [dm3] 2R_22655094_SNP [dm6]	G	A	4.589e^-4	0.958	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5234875	3L_5234875_SNP [dm3] 3L_5241775_SNP [dm6]	C	G	4.593e^-4	0.958	INTRON shep
3L	22970267	3L_22970267_SNP [dm3] 3L_22977167_SNP [dm6]	T	A	4.598e^-4	0.958	INTERGENIC
2R	13838954	2R_13838954_SNP [dm3] 2R_17951449_SNP [dm6]	G	A	4.598e^-4	0.958	INTERGENIC
3L	6259627	3L_6259627_SNP [dm3] 3L_6266527_SNP [dm6]	T	A	4.605e^-4	0.958	INTERGENIC
3R	21027496	3R_21027496_SNP [dm3] 3R_25201774_SNP [dm6]	T	G	4.609e^-4	0.958	INTRON CG13654 & 1 other
3R	7789766	3R_7789766_SNP [dm3] 3R_11964044_SNP [dm6]	A	G	4.610e^-4	0.958	SYNONYMOUS_CODING aur DOWNSTREAM CG12213	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19569587	3R_19569587_SNP [dm3] 3R_23743865_SNP [dm6]	G	T	4.612e^-4	0.958	INTRON Hmgcr
2R	14822548	2R_14822548_SNP [dm3] 2R_18935043_SNP [dm6]	C	T	4.620e^-4	0.958	INTRON sano
2L	1111247	2L_1111247_SNP [dm3] 2L_1111247_SNP [dm6]	C	A	4.622e^-4	0.958	INTRON CG14339
X	4772965	X_4772965_DEL [dm3] X_4878932_DEL [dm6]	GGTTTTGTGTTTTCCATTAA...	G	4.629e^-4	0.958	INTRON CG42594
3R	4339849	3R_4339849_SNP [dm3] 3R_8514127_SNP [dm6]	A	T	4.634e^-4	0.958	INTERGENIC
X	8105313	X_8105313_SNP [dm3] X_8211280_SNP [dm6]	C	T	4.635e^-4	0.958	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15334773	2R_15334773_SNP [dm3] 2R_19447268_SNP [dm6]	G	A	4.638e^-4	0.958	UPSTREAM EloC DOWNSTREAM betaTub56D INTERGENIC	TF binding site mE1_TFBS_cad
2L	10232322	2L_10232322_SNP [dm3] 2L_10232322_SNP [dm6]	T	C	4.640e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10232327	2L_10232327_SNP [dm3] 2L_10232327_SNP [dm6]	T	C	4.640e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10595221	3L_10595221_SNP [dm3] 3L_10602121_SNP [dm6]	A	T	4.641e^-4	0.958	INTERGENIC
2L	18631686	2L_18631686_SNP [dm3] 2L_18631686_SNP [dm6]	A	T	4.645e^-4	0.958	INTRON MESR3
2R	13823378	2R_13823378_SNP [dm3] 2R_17935873_SNP [dm6]	T	C	4.646e^-4	0.958	INTERGENIC
X	2821066	X_2821066_SNP [dm3] X_2927033_SNP [dm6]	T	C	4.646e^-4	0.958	INTRON kirre & 1 other
3R	11696717	3R_11696717_SNP [dm3] 3R_15870995_SNP [dm6]	G	T	4.655e^-4	0.958	INTRON CG31183
2R	16719408	2R_16719408_SNP [dm3] 2R_20831903_SNP [dm6]	T	C	4.658e^-4	0.958	UTR_5_PRIME sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	19506853	2L_19506853_SNP [dm3] 2L_19506853_SNP [dm6]	C	T	4.662e^-4	0.958	INTRON CG10188	transposable element FlyBase
3R	24414471	3R_24414471_SNP [dm3] 3R_28588749_SNP [dm6]	G	T	4.677e^-4	0.958	DOWNSTREAM MRE23 EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12301676	3R_12301676_SNP [dm3] 3R_16475954_SNP [dm6]	A	C	4.679e^-4	0.958	DOWNSTREAM Gyc-89Da INTERGENIC
2R	18900128	2R_18900128_SNP [dm3] 2R_23012605_SNP [dm6]	T	C	4.681e^-4	0.958	NON_SYNONYMOUS_CODING CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo
2R	6531582	2R_6531582_SNP [dm3] 2R_10644077_SNP [dm6]	T	C	4.690e^-4	0.958	INTRON Git	TF binding site mE1_TFBS_HSA
X	21446619	X_21446619_DEL [dm3] X_21575592_DEL [dm6]	ACGAAAA	A	4.692e^-4	0.958	INTERGENIC
X	8290729	X_8290729_SNP [dm3] X_8396696_SNP [dm6]	T	G	4.696e^-4	0.958	DOWNSTREAM CG15345 INTERGENIC
3L	24031927	3L_24031927_SNP [dm3] 3L_24038827_SNP [dm6]	G	T	4.703e^-4	0.958	INTERGENIC
2L	10819608	2L_10819608_SNP [dm3] 2L_10819608_SNP [dm6]	A	T	4.709e^-4	0.958	SYNONYMOUS_CODING CG6508 INTRON Nos	TF binding site mE1_TFBS_cad
X	17952330	X_17952330_SNP [dm3] X_18058297_SNP [dm6]	A	T	4.713e^-4	0.958	INTRON Sh
3R	3971795	3R_3971795_SNP [dm3] 3R_8146073_SNP [dm6]	T	A	4.715e^-4	0.958	INTERGENIC
3L	12918367	3L_12918367_SNP [dm3] 3L_12925267_SNP [dm6]	T	G	4.716e^-4	0.958	INTERGENIC
2L	18550506	2L_18550506_SNP [dm3] 2L_18550506_SNP [dm6]	C	T	4.724e^-4	0.958	INTRON Pde11
3R	10420221	3R_10420221_SNP [dm3] 3R_14594499_SNP [dm6]	A	G	4.727e^-4	0.958	INTRON stumps	regulatory region REDfly_CRMs
2R	12889634	2R_12889634_SNP [dm3] 2R_17002129_SNP [dm6]	C	T	4.728e^-4	0.958	UPSTREAM ste24a INTRON CG6796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9444660	X_9444660_SNP [dm3] X_9550627_SNP [dm6]	T	C	4.744e^-4	0.958	UTR_5_PRIME CG32700 DOWNSTREAM l_1_G0320
3R	11646453	3R_11646453_SNP [dm3] 3R_15820731_SNP [dm6]	A	T	4.745e^-4	0.958	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad
3L	3911472	3L_3911472_SNP [dm3] 3L_3911472_SNP [dm6]	C	T	4.746e^-4	0.958	UTR_3_PRIME Eip63F-1 DOWNSTREAM Eip63F-1
2R	20280809	2R_20280809_SNP [dm3] 2R_24393286_SNP [dm6]	A	T	4.754e^-4	0.958	DOWNSTREAM slik INTRON slik
3R	19548083	3R_19548083_SNP [dm3] 3R_23722361_SNP [dm6]	G	C	4.758e^-4	0.958	UPSTREAM CG10232 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10232506	2L_10232506_SNP [dm3] 2L_10232506_SNP [dm6]	C	T	4.761e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2316626	3L_2316626_SNP [dm3] 3L_2316626_SNP [dm6]	T	C	4.762e^-4	0.958	DOWNSTREAM CR45427 INTERGENIC
2L	1111258	2L_1111258_SNP [dm3] 2L_1111258_SNP [dm6]	T	G	4.762e^-4	0.958	SPLICE_SITE_REGION CG14339 INTRON CG14339
3R	14390438	3R_14390438_SNP [dm3] 3R_18564716_SNP [dm6]	T	C	4.765e^-4	0.958	NON_SYNONYMOUS_CODING CG43210 UTR_3_PRIME CG43194
3R	10227754	3R_10227754_SNP [dm3] 3R_14402032_SNP [dm6]	A	G	4.774e^-4	0.958	INTRON cv-c
2R	8908368	2R_8908368_SNP [dm3] 2R_13020863_SNP [dm6]	T	A	4.780e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
3R	453234	3R_453234_SNP [dm3] 3R_4627512_SNP [dm6]	T	C	4.794e^-4	0.958	INTRON 5-HT2A
3L	13839268	3L_13839268_SNP [dm3] 3L_13846168_SNP [dm6]	G	A	4.797e^-4	0.958	UTR_5_PRIME Hml DOWNSTREAM Tsp68C
2L	19827186	2L_19827186_SNP [dm3] 2L_19827186_SNP [dm6]	A	G	4.798e^-4	0.958	UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12133844	3L_12133844_SNP [dm3] 3L_12140744_SNP [dm6]	G	A	4.801e^-4	0.958	INTRON RhoGAP68F
X	3201102	X_3201102_SNP [dm3] X_3307069_SNP [dm6]	T	G	4.805e^-4	0.958	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15344778	3R_15344778_SNP [dm3] 3R_19519056_SNP [dm6]	T	C	4.811e^-4	0.958	INTRON Dys
2L	1034392	2L_1034392_SNP [dm3] 2L_1034392_SNP [dm6]	T	C	4.813e^-4	0.958	INTRON IA-2
2R	8514237	2R_8514237_SNP [dm3] 2R_12626732_SNP [dm6]	T	A	4.813e^-4	0.958	INTRON CG17760
3R	14447590	3R_14447590_SNP [dm3] 3R_18621868_SNP [dm6]	A	T	4.817e^-4	0.958	UPSTREAM CG14304 INTRON qin
2R	18051485	2R_18051485_SNP [dm3] 2R_22163980_SNP [dm6]	T	A	4.823e^-4	0.958	NON_SYNONYMOUS_CODING CG34206 INTRON a
2R	8383501	2R_8383501_SNP [dm3] 2R_12495996_SNP [dm6]	A	G	4.825e^-4	0.958	SYNONYMOUS_CODING s-cup INTRON fdl
2R	20277944	2R_20277944_SNP [dm3] 2R_24390421_SNP [dm6]	A	T	4.827e^-4	0.958	UPSTREAM CR44813 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8140834	2L_8140834_SNP [dm3] 2L_8140834_SNP [dm6]	A	T	4.843e^-4	0.958	DOWNSTREAM mir-4984 INTRON CG8552	TF binding site mE1_TFBS_cad
2L	8140835	2L_8140835_SNP [dm3] 2L_8140835_SNP [dm6]	G	T	4.843e^-4	0.958	DOWNSTREAM mir-4984 INTRON CG8552	TF binding site mE1_TFBS_cad
2R	4942633	2R_4942633_SNP [dm3] 2R_9055128_SNP [dm6]	G	C	4.852e^-4	0.958	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18013864	2R_18013864_SNP [dm3] 2R_22126359_SNP [dm6]	T	G	4.855e^-4	0.958	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21813205	2L_21813205_SNP [dm3] 2L_21813205_SNP [dm6]	T	C	4.856e^-4	0.958	INTERGENIC
X	20405355	X_20405355_SNP [dm3] X_20534328_SNP [dm6]	A	G	4.857e^-4	0.958	INTERGENIC
2R	13763842	2R_13763842_SNP [dm3] 2R_17876337_SNP [dm6]	C	T	4.862e^-4	0.958	INTRON Elk
2L	14143415	2L_14143415_SNP [dm3] 2L_14143415_SNP [dm6]	G	A	4.864e^-4	0.958	INTRON CG17341
2R	18615133	2R_18615133_SNP [dm3] 2R_22727628_SNP [dm6]	T	G	4.869e^-4	0.958	UTR_5_PRIME jbug INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7611787	2R_7611787_DEL [dm3] 2R_11724282_DEL [dm6]	TTTT	T	4.870e^-4	0.958	INTRON pyr	TF binding site BDTNP1_TFBS_da
3R	25738170	3R_25738170_SNP [dm3] 3R_29912448_SNP [dm6]	G	A	4.878e^-4	0.958	DOWNSTREAM Capa INTRON CG31036
2R	17167557	2R_17167557_SNP [dm3] 2R_21280052_SNP [dm6]	T	G	4.899e^-4	0.958	UTR_3_PRIME Rgk3
3R	19542802	3R_19542802_SNP [dm3] 3R_23717080_SNP [dm6]	G	A	4.905e^-4	0.958	INTRON nau
2L	10232254	2L_10232254_SNP [dm3] 2L_10232254_SNP [dm6]	G	T	4.906e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	9129706	X_9129706_SNP [dm3] X_9235673_SNP [dm6]	A	G	4.918e^-4	0.958	DOWNSTREAM mir-4916 INTRON Ir8a
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	4.920e^-4	0.958	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	14254792	2L_14254792_DEL [dm3] 2L_14254792_DEL [dm6]	GAAACGT	G	4.925e^-4	0.958	INTERGENIC
2R	18611717	2R_18611717_SNP [dm3] 2R_22724212_SNP [dm6]	G	A	4.928e^-4	0.958	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	10527928	3R_10527928_SNP [dm3] 3R_14702206_SNP [dm6]	C	G	4.929e^-4	0.958	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3340535	2L_3340535_SNP [dm3] 2L_3340535_SNP [dm6]	A	T	4.931e^-4	0.958	INTRON E23
3R	17394772	3R_17394772_SNP [dm3] 3R_21569050_SNP [dm6]	G	A	4.936e^-4	0.958	UTR_5_PRIME CG15498
3L	18295639	3L_18295639_SNP [dm3] 3L_18302539_SNP [dm6]	T	A	4.939e^-4	0.958	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	20233597	2R_20233597_SNP [dm3] 2R_24346074_SNP [dm6]	A	G	4.942e^-4	0.958	INTRON bs
2R	21002965	2R_21002965_SNP [dm3] 2R_25115442_SNP [dm6]	A	G	4.947e^-4	0.958	INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16446664	2R_16446664_INS [dm3] 2R_20559159_INS [dm6]	T	TCT	4.949e^-4	0.958	UTR_3_PRIME lms & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9767643	2R_9767643_SNP [dm3] 2R_13880138_SNP [dm6]	A	G	4.950e^-4	0.958	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	9982199	2L_9982199_SNP [dm3] 2L_9982199_SNP [dm6]	G	A	4.957e^-4	0.958	INTERGENIC
3L	13074880	3L_13074880_SNP [dm3] 3L_13081780_SNP [dm6]	C	T	4.958e^-4	0.958	EXON CR43652	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2083373	3L_2083373_SNP [dm3] 3L_2083373_SNP [dm6]	C	G	4.970e^-4	0.958	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
3R	11895366	3R_11895366_SNP [dm3] 3R_16069644_SNP [dm6]	G	A	4.973e^-4	0.958	DOWNSTREAM Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad
2L	10232501	2L_10232501_SNP [dm3] 2L_10232501_SNP [dm6]	T	C	4.985e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2379671	3L_2379671_SNP [dm3] 3L_2379671_SNP [dm6]	A	G	4.988e^-4	0.958	INTRON CG45186
3R	15955243	3R_15955243_SNP [dm3] 3R_20129521_SNP [dm6]	A	T	4.992e^-4	0.958	INTERGENIC
3L	3918248	3L_3918248_SNP [dm3] 3L_3918248_SNP [dm6]	A	G	4.994e^-4	0.958	INTRON Eip63F-1
2R	21019379	2R_21019379_SNP [dm3] 2R_25131856_SNP [dm6]	G	T	5.003e^-4	0.958	INTRON lov
3L	24076186	3L_24076186_SNP [dm3] 3L_24083086_SNP [dm6]	A	T	5.006e^-4	0.958	INTRON Snap25
3R	19444874	3R_19444874_SNP [dm3] 3R_23619152_SNP [dm6]	G	A	5.021e^-4	0.958	INTRON CG31145
2R	12474317	2R_12474317_SNP [dm3] 2R_16586812_SNP [dm6]	T	C	5.022e^-4	0.958	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3819260	X_3819260_SNP [dm3] X_3925227_SNP [dm6]	C	A	5.026e^-4	0.958	INTRON CG42541
3L	18299074	3L_18299074_SNP [dm3] 3L_18305974_SNP [dm6]	C	T	5.031e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12302006	3R_12302006_SNP [dm3] 3R_16476284_SNP [dm6]	A	G	5.032e^-4	0.958	UPSTREAM Gyc-89Db DOWNSTREAM Gyc-89Da INTERGENIC
2R	16093261	2R_16093261_SNP [dm3] 2R_20205756_SNP [dm6]	G	A	5.032e^-4	0.958	INTERGENIC
2R	6003200	2R_6003200_SNP [dm3] 2R_10115695_SNP [dm6]	G	T	5.032e^-4	0.958	SYNONYMOUS_CODING Pfk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25533937	3R_25533937_SNP [dm3] 3R_29708215_SNP [dm6]	G	C	5.048e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15192333	2R_15192333_SNP [dm3] 2R_19304828_SNP [dm6]	A	T	5.051e^-4	0.958	UPSTREAM CG7461 DOWNSTREAM Tab2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7844252	2L_7844252_SNP [dm3] 2L_7844252_SNP [dm6]	C	T	5.053e^-4	0.958	DOWNSTREAM CG14535 INTERGENIC
2L	10835209	2L_10835209_SNP [dm3] 2L_10835209_SNP [dm6]	A	G	5.058e^-4	0.958	INTRON Nos
X	9909233	X_9909233_INS [dm3] X_10015200_INS [dm6]	T	TT	5.059e^-4	0.958	DOWNSTREAM CG2990 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	20269022	2R_20269022_SNP [dm3] 2R_24381499_SNP [dm6]	T	C	5.060e^-4	0.958	SYNONYMOUS_CODING mAChR-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13219254	2R_13219254_DEL [dm3] 2R_17331749_DEL [dm6]	ATTTGTTTTCTTACAGGG...	A	5.064e^-4	0.958	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	13219277	2R_13219277_DEL [dm3] 2R_17331772_DEL [dm6]	TCCTTTA	T	5.064e^-4	0.958	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	13219290	2R_13219290_SNP [dm3] 2R_17331785_SNP [dm6]	G	A	5.064e^-4	0.958	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2L	10232470	2L_10232470_SNP [dm3] 2L_10232470_SNP [dm6]	G	A	5.069e^-4	0.958	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8492725	2R_8492725_SNP [dm3] 2R_12605220_SNP [dm6]	G	A	5.090e^-4	0.958	INTRON Amph
3L	13174978	3L_13174978_SNP [dm3] 3L_13181878_SNP [dm6]	T	A	5.092e^-4	0.958	INTERGENIC
3L	10916152	3L_10916152_SNP [dm3] 3L_10923052_SNP [dm6]	A	C	5.108e^-4	0.958	INTERGENIC
X	20364998	X_20364998_DEL [dm3] X_20493971_DEL [dm6]	TGTAGTCATGTATTTAGAAG...	T	5.111e^-4	0.958	INTRON RhoGAP19D
3R	17874146	3R_17874146_SNP [dm3] 3R_22048424_SNP [dm6]	T	G	5.122e^-4	0.958	INTRON how	TF binding site BDTNP1_TFBS_twi
2R	21006184	2R_21006184_SNP [dm3] 2R_25118661_SNP [dm6]	C	A	5.131e^-4	0.958	INTRON lov
2L	10222194	2L_10222194_SNP [dm3] 2L_10222194_SNP [dm6]	T	C	5.136e^-4	0.958	UPSTREAM Npc1a & 1 other INTRON Prosalpha6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	20768483	3R_20768483_SNP [dm3] 3R_24942761_SNP [dm6]	A	T	5.154e^-4	0.958	INTRON ssh	TF binding site mE1_TFBS_chinmo
2R	7073134	2R_7073134_SNP [dm3] 2R_11185629_SNP [dm6]	G	A	5.157e^-4	0.958	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14399205	2R_14399205_SNP [dm3] 2R_18511700_SNP [dm6]	A	T	5.161e^-4	0.958	INTERGENIC
2R	2048193	2R_2048193_SNP [dm3] 2R_6160688_SNP [dm6]	A	G	5.165e^-4	0.958	UPSTREAM tRNA:R2:42Ac INTRON EcR	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	8291575	2L_8291575_SNP [dm3] 2L_8291575_SNP [dm6]	C	T	5.166e^-4	0.958	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site mE1_TFBS_HSA
2R	21062057	2R_21062057_DEL [dm3] 2R_25174534_DEL [dm6]	TTCTAGGTAGATAAGTAGTC...	T	5.169e^-4	0.958	UPSTREAM PebII DOWNSTREAM Peb INTERGENIC
3L	9176146	3L_9176146_SNP [dm3] 3L_9183046_SNP [dm6]	A	G	5.171e^-4	0.958	UPSTREAM Rdl INTERGENIC
3R	22446054	3R_22446054_SNP [dm3] 3R_26620332_SNP [dm6]	T	A	5.174e^-4	0.958	DOWNSTREAM TwdlP & 1 other INTERGENIC
2L	19417881	2L_19417881_SNP [dm3] 2L_19417881_SNP [dm6]	C	G	5.178e^-4	0.958	NON_SYNONYMOUS_CODING Lectin-galC1 UPSTREAM lectin-37Da INTRON Pax
2L	18375708	2L_18375708_SNP [dm3] 2L_18375708_SNP [dm6]	T	A	5.182e^-4	0.958	INTRON Fas3
2R	8630758	2R_8630758_SNP [dm3] 2R_12743253_SNP [dm6]	C	G	5.185e^-4	0.958	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6350342	X_6350342_SNP [dm3] X_6456309_SNP [dm6]	C	T	5.196e^-4	0.958	INTRON CG42340
3R	11285050	3R_11285050_SNP [dm3] 3R_15459328_SNP [dm6]	C	G	5.202e^-4	0.958	INTRON AdamTS-A
2R	16676347	2R_16676347_SNP [dm3] 2R_20788842_SNP [dm6]	C	T	5.211e^-4	0.958	SYNONYMOUS_CODING CG43666 DOWNSTREAM CG43667	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10302760	2R_10302760_SNP [dm3] 2R_14415255_SNP [dm6]	G	A	5.215e^-4	0.958	INTERGENIC
3L	17941011	3L_17941011_SNP [dm3] 3L_17947911_SNP [dm6]	G	T	5.216e^-4	0.958	UPSTREAM CR45393 INTERGENIC
3R	19298676	3R_19298676_SNP [dm3] 3R_23472954_SNP [dm6]	G	C	5.218e^-4	0.958	UPSTREAM CG4374 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	26063014	3R_26063014_SNP [dm3] 3R_30237292_SNP [dm6]	G	A	5.222e^-4	0.958	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4098850	2L_4098850_SNP [dm3] 2L_4098850_SNP [dm6]	C	T	5.236e^-4	0.958	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12731874	2R_12731874_SNP [dm3] 2R_16844369_SNP [dm6]	T	G	5.241e^-4	0.958	SYNONYMOUS_CODING Ugt37c1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21446627	X_21446627_DEL [dm3] X_21575600_DEL [dm6]	TAATTTGGAACGATAATATA...	T	5.244e^-4	0.958	INTERGENIC
2R	5608487	2R_5608487_SNP [dm3] 2R_9720982_SNP [dm6]	A	G	5.247e^-4	0.958	INTRON sqa
3L	10534405	3L_10534405_SNP [dm3] 3L_10541305_SNP [dm6]	A	G	5.254e^-4	0.958	INTRON A2bp1
X	17952286	X_17952286_SNP [dm3] X_18058253_SNP [dm6]	C	T	5.281e^-4	0.958	INTRON Sh

By genomic position
Variant impact
Gene name

se_PhototaxisScor_2w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results