DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.978e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3547 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25664186	3R_25664186_SNP [dm3] 3R_29838464_SNP [dm6]	A	G	4.378e^-8	0.082	INTERGENIC
3R	25664191	3R_25664191_DEL [dm3] 3R_29838469_DEL [dm6]	TACACATATT	T	2.122e^-7	0.199	INTERGENIC
3R	25664384	3R_25664384_SNP [dm3] 3R_29838662_SNP [dm6]	G	A	4.532e^-7	0.205	INTERGENIC
3R	25664352	3R_25664352_SNP [dm3] 3R_29838630_SNP [dm6]	T	C	5.362e^-7	0.205	INTERGENIC
3R	13970249	3R_13970249_SNP [dm3] 3R_18144527_SNP [dm6]	C	G	5.461e^-7	0.205	INTERGENIC
3L	10449191	3L_10449191_SNP [dm3] 3L_10456091_SNP [dm6]	T	C	1.109e^-6	0.246	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14258119	3L_14258119_SNP [dm3] 3L_14265019_SNP [dm6]	A	T	1.246e^-6	0.246	INTERGENIC
2L	21970644	2L_21970644_SNP [dm3] 2L_21970644_SNP [dm6]	A	G	1.308e^-6	0.246	INTERGENIC
3L	13941581	3L_13941581_SNP [dm3] 3L_13948481_SNP [dm6]	G	T	1.332e^-6	0.246	INTRON CG32137
3R	25664389	3R_25664389_SNP [dm3] 3R_29838667_SNP [dm6]	T	A	1.387e^-6	0.246	INTERGENIC
3R	13926655	3R_13926655_DEL [dm3] 3R_18100933_DEL [dm6]	GCTGTCTAGAGTAATATG...	G	1.502e^-6	0.246	INTRON sr
3L	6758605	3L_6758605_SNP [dm3] 3L_6765505_SNP [dm6]	T	C	1.574e^-6	0.246	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25466475	3R_25466475_SNP [dm3] 3R_29640753_SNP [dm6]	G	A	2.176e^-6	0.292	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
3L	9651379	3L_9651379_DEL [dm3] 3L_9658279_DEL [dm6]	GA	T	2.179e^-6	0.292	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3R	7736167	3R_7736167_SNP [dm3] 3R_11910445_SNP [dm6]	T	C	3.061e^-6	0.316	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8813199	X_8813199_INS [dm3] X_8919166_INS [dm6]	G	GAG	3.157e^-6	0.316	DOWNSTREAM CR44111 INTRON rdgA
3R	25664327	3R_25664327_SNP [dm3] 3R_29838605_SNP [dm6]	A	G	3.215e^-6	0.316	INTERGENIC
3L	1631785	3L_1631785_SNP [dm3] 3L_1631785_SNP [dm6]	G	A	3.260e^-6	0.316	UTR_3_PRIME nSyb DOWNSTREAM nSyb
3L	7453864	3L_7453864_SNP [dm3] 3L_7460764_SNP [dm6]	A	G	3.332e^-6	0.316	INTERGENIC
3R	25664015	3R_25664015_SNP [dm3] 3R_29838293_SNP [dm6]	T	A	3.493e^-6	0.316	DOWNSTREAM CG15510 INTERGENIC
3L	11368616	3L_11368616_SNP [dm3] 3L_11375516_SNP [dm6]	A	T	4.187e^-6	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11368628	3L_11368628_SNP [dm3] 3L_11375528_SNP [dm6]	G	C	4.194e^-6	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16365987	2L_16365987_SNP [dm3] 2L_16365987_SNP [dm6]	C	T	4.334e^-6	0.316	SYNONYMOUS_CODING jhamt
3L	18198297	3L_18198297_SNP [dm3] 3L_18205197_SNP [dm6]	C	G	4.709e^-6	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21970641	2L_21970641_SNP [dm3] 2L_21970641_SNP [dm6]	C	G	4.851e^-6	0.316	INTERGENIC
2L	3637531	2L_3637531_SNP [dm3] 2L_3637531_SNP [dm6]	A	C	5.380e^-6	0.316	UPSTREAM mir-4972 INTRON for
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	5.444e^-6	0.316	UPSTREAM CG10597 INTERGENIC
2R	10354635	2R_10354635_SNP [dm3] 2R_14467130_SNP [dm6]	A	T	5.523e^-6	0.316	INTERGENIC
2L	18424800	2L_18424800_SNP [dm3] 2L_18424800_SNP [dm6]	G	T	5.598e^-6	0.316	INTERGENIC
3L	9618119	3L_9618119_SNP [dm3] 3L_9625019_SNP [dm6]	C	T	5.943e^-6	0.316	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6758637	3L_6758637_SNP [dm3] 3L_6765537_SNP [dm6]	C	A	6.320e^-6	0.316	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24900210	3R_24900210_SNP [dm3] 3R_29074488_SNP [dm6]	G	A	6.400e^-6	0.316	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14350115	3L_14350115_SNP [dm3] 3L_14357015_SNP [dm6]	A	G	6.736e^-6	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	15932388	3L_15932388_DEL [dm3] 3L_15939288_DEL [dm6]	AT	A	7.358e^-6	0.316	INTRON Pka-C3
X	20894974	X_20894974_SNP [dm3] X_21023947_SNP [dm6]	G	A	7.453e^-6	0.316	SYNONYMOUS_CODING r-cup
3L	8437847	3L_8437847_SNP [dm3] 3L_8444747_SNP [dm6]	A	G	7.522e^-6	0.316	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10433970	2R_10433970_SNP [dm3] 2R_14546465_SNP [dm6]	A	C	7.642e^-6	0.316	UPSTREAM CG30076 INTRON ttv
3L	12522437	3L_12522437_SNP [dm3] 3L_12529337_SNP [dm6]	T	G	7.721e^-6	0.316	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14350039	3L_14350039_SNP [dm3] 3L_14356939_SNP [dm6]	A	C	7.835e^-6	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	6757809	3L_6757809_SNP [dm3] 3L_6764709_SNP [dm6]	T	C	7.886e^-6	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	15932392	3L_15932392_SNP [dm3] 3L_15939292_SNP [dm6]	A	G	7.954e^-6	0.316	INTRON Pka-C3
2L	6848368	2L_6848368_SNP [dm3] 2L_6848368_SNP [dm6]	A	C	8.167e^-6	0.316	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	20875934	X_20875934_SNP [dm3] X_21004907_SNP [dm6]	T	C	8.173e^-6	0.316	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20878262	X_20878262_DEL [dm3] X_21007235_DEL [dm6]	ATTTTCAGTTCCGCA...	A	8.291e^-6	0.316	INTERGENIC
2L	11579811	2L_11579811_SNP [dm3] 2L_11579811_SNP [dm6]	C	T	8.448e^-6	0.316	INTERGENIC
3L	6758576	3L_6758576_SNP [dm3] 3L_6765476_SNP [dm6]	C	T	8.528e^-6	0.316	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1812611	3L_1812611_SNP [dm3] 3L_1812611_SNP [dm6]	G	C	8.912e^-6	0.316	INTRON GV1
3R	25228555	3R_25228555_SNP [dm3] 3R_29402833_SNP [dm6]	T	C	9.347e^-6	0.316	INTRON Ptp99A
3L	7453628	3L_7453628_SNP [dm3] 3L_7460528_SNP [dm6]	C	T	9.614e^-6	0.316	INTERGENIC
3R	15137458	3R_15137458_SNP [dm3] 3R_19311736_SNP [dm6]	C	A	1.014e^-5	0.316	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14349959	3L_14349959_SNP [dm3] 3L_14356859_SNP [dm6]	T	A	1.031e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14349999	3L_14349999_SNP [dm3] 3L_14356899_SNP [dm6]	T	C	1.031e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14350000	3L_14350000_SNP [dm3] 3L_14356900_SNP [dm6]	G	A	1.031e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9618082	3L_9618082_SNP [dm3] 3L_9624982_SNP [dm6]	A	G	1.049e^-5	0.316	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25299660	3R_25299660_SNP [dm3] 3R_29473938_SNP [dm6]	T	G	1.050e^-5	0.316	INTRON Ptp99A
3L	14349977	3L_14349977_SNP [dm3] 3L_14356877_SNP [dm6]	T	G	1.051e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1631626	3L_1631626_SNP [dm3] 3L_1631626_SNP [dm6]	C	T	1.054e^-5	0.316	UTR_3_PRIME nSyb DOWNSTREAM nSyb
2R	7482896	2R_7482896_SNP [dm3] 2R_11595391_SNP [dm6]	A	C	1.064e^-5	0.316	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14350073	3L_14350073_SNP [dm3] 3L_14356973_SNP [dm6]	G	A	1.079e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	14866059	2L_14866059_SNP [dm3] 2L_14866059_SNP [dm6]	G	T	1.091e^-5	0.316	INTERGENIC
3L	14350101	3L_14350101_SNP [dm3] 3L_14357001_SNP [dm6]	C	T	1.103e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	1.117e^-5	0.316	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13100502	2R_13100502_SNP [dm3] 2R_17212997_SNP [dm6]	C	T	1.134e^-5	0.316	INTERGENIC
3R	14175017	3R_14175017_SNP [dm3] 3R_18349295_SNP [dm6]	A	T	1.144e^-5	0.316	INTRON CG15803
3L	14349988	3L_14349988_SNP [dm3] 3L_14356888_SNP [dm6]	C	A	1.158e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14349981	3L_14349981_SNP [dm3] 3L_14356881_SNP [dm6]	A	G	1.198e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14350011	3L_14350011_DEL [dm3] 3L_14356911_DEL [dm6]	ACTTATAA	A	1.203e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4416568	3L_4416568_SNP [dm3] 3L_4416568_SNP [dm6]	C	T	1.212e^-5	0.316	INTRON DOR
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	1.249e^-5	0.316	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	8515007	2R_8515007_SNP [dm3] 2R_12627502_SNP [dm6]	G	A	1.261e^-5	0.316	INTRON CG17760
2R	16192431	2R_16192431_SNP [dm3] 2R_20304926_SNP [dm6]	C	T	1.266e^-5	0.316	SYNONYMOUS_CODING CG11200
2L	11666731	2L_11666731_SNP [dm3] 2L_11666731_SNP [dm6]	A	T	1.307e^-5	0.316	DOWNSTREAM CR44481 INTERGENIC
3L	9651390	3L_9651390_SNP [dm3] 3L_9658290_SNP [dm6]	G	C	1.356e^-5	0.316	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	1.363e^-5	0.316	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
3R	13970250	3R_13970250_SNP [dm3] 3R_18144528_SNP [dm6]	A	G	1.380e^-5	0.316	INTERGENIC
3L	14350320	3L_14350320_SNP [dm3] 3L_14357220_SNP [dm6]	A	G	1.422e^-5	0.316	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	11666732	2L_11666732_SNP [dm3] 2L_11666732_SNP [dm6]	C	T	1.424e^-5	0.316	DOWNSTREAM CR44481 INTERGENIC
3R	14967442	3R_14967442_SNP [dm3] 3R_19141720_SNP [dm6]	C	A	1.426e^-5	0.316	INTRON Ppcs
3L	11146692	3L_11146692_SNP [dm3] 3L_11153592_SNP [dm6]	T	A	1.435e^-5	0.316	INTRON CG32082
2R	2900509	2R_2900509_SNP [dm3] 2R_7013004_SNP [dm6]	G	A	1.445e^-5	0.316	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15071254	3R_15071254_SNP [dm3] 3R_19245532_SNP [dm6]	T	C	1.455e^-5	0.316	INTRON unc79
3R	24900244	3R_24900244_SNP [dm3] 3R_29074522_SNP [dm6]	T	C	1.473e^-5	0.316	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7453428	3L_7453428_SNP [dm3] 3L_7460328_SNP [dm6]	C	T	1.477e^-5	0.316	INTERGENIC
X	20848434	X_20848434_SNP [dm3] X_20977407_SNP [dm6]	C	T	1.479e^-5	0.316	UPSTREAM CG44426 INTERGENIC
3R	13926725	3R_13926725_SNP [dm3] 3R_18101003_SNP [dm6]	G	T	1.480e^-5	0.316	INTRON sr
2L	8283425	2L_8283425_SNP [dm3] 2L_8283425_SNP [dm6]	C	T	1.482e^-5	0.316	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
2L	6517497	2L_6517497_SNP [dm3] 2L_6517497_SNP [dm6]	T	G	1.514e^-5	0.316	INTRON CG31637
3L	15932497	3L_15932497_SNP [dm3] 3L_15939397_SNP [dm6]	A	T	1.516e^-5	0.316	INTRON Pka-C3
2L	14866064	2L_14866064_SNP [dm3] 2L_14866064_SNP [dm6]	C	G	1.516e^-5	0.316	INTERGENIC
2L	14452468	2L_14452468_INS [dm3] 2L_14452468_INS [dm6]	C	CTC	1.527e^-5	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1631830	3L_1631830_SNP [dm3] 3L_1631830_SNP [dm6]	C	T	1.552e^-5	0.316	UTR_3_PRIME nSyb DOWNSTREAM nSyb
3R	14175014	3R_14175014_SNP [dm3] 3R_18349292_SNP [dm6]	C	A	1.552e^-5	0.316	INTRON CG15803
3R	25467181	3R_25467181_SNP [dm3] 3R_29641459_SNP [dm6]	G	C	1.592e^-5	0.318	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20875935	X_20875935_SNP [dm3] X_21004908_SNP [dm6]	T	C	1.614e^-5	0.318	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	14967587	3R_14967587_SNP [dm3] 3R_19141865_SNP [dm6]	G	A	1.637e^-5	0.318	INTRON Ppcs
3L	4918298	3L_4918298_SNP [dm3] 3L_4918298_SNP [dm6]	C	T	1.654e^-5	0.318	INTRON Rh50
2R	7481193	2R_7481193_SNP [dm3] 2R_11593688_SNP [dm6]	T	G	1.681e^-5	0.318	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	14912734	2L_14912734_SNP [dm3] 2L_14912734_SNP [dm6]	T	C	1.702e^-5	0.318	INTRON CG42313
3R	6322801	3R_6322801_SNP [dm3] 3R_10497079_SNP [dm6]	T	C	1.704e^-5	0.318	INTERGENIC
3L	20631270	3L_20631270_SNP [dm3] 3L_20638170_SNP [dm6]	G	T	1.709e^-5	0.318	NON_SYNONYMOUS_CODING CG13251	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11368623	3L_11368623_SNP [dm3] 3L_11375523_SNP [dm6]	A	G	1.712e^-5	0.318	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15457092	3R_15457092_SNP [dm3] 3R_19631370_SNP [dm6]	T	G	1.786e^-5	0.319	INTRON CG6231
3R	25595053	3R_25595053_SNP [dm3] 3R_29769331_SNP [dm6]	G	A	1.788e^-5	0.319	INTRON kay
2L	16440605	2L_16440605_SNP [dm3] 2L_16440605_SNP [dm6]	C	T	1.814e^-5	0.319	INTRON CG5888
2L	19419422	2L_19419422_SNP [dm3] 2L_19419422_SNP [dm6]	A	G	1.824e^-5	0.319	SYNONYMOUS_CODING lectin-37Db DOWNSTREAM lectin-37Da INTRON Pax
3R	13660080	3R_13660080_SNP [dm3] 3R_17834358_SNP [dm6]	C	A	1.856e^-5	0.319	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	9843555	2R_9843555_INS [dm3] 2R_13956050_INS [dm6]	T	TTGAT	1.884e^-5	0.319	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	4918184	3L_4918184_SNP [dm3] 3L_4918184_SNP [dm6]	T	A	1.887e^-5	0.319	INTRON Rh50
2R	7474432	2R_7474432_SNP [dm3] 2R_11586927_SNP [dm6]	T	C	1.894e^-5	0.319	SYNONYMOUS_CODING tou
2L	18424823	2L_18424823_SNP [dm3] 2L_18424823_SNP [dm6]	C	T	1.952e^-5	0.319	INTERGENIC
3L	9537377	3L_9537377_SNP [dm3] 3L_9544277_SNP [dm6]	C	T	1.960e^-5	0.319	UPSTREAM Ir67a INTERGENIC
3L	4918278	3L_4918278_SNP [dm3] 3L_4918278_SNP [dm6]	C	T	1.960e^-5	0.319	INTRON Rh50
X	8813030	X_8813030_SNP [dm3] X_8918997_SNP [dm6]	C	T	1.972e^-5	0.319	DOWNSTREAM CR44111 INTRON rdgA
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	1.974e^-5	0.319	INTERGENIC
3R	25661689	3R_25661689_SNP [dm3] 3R_29835967_SNP [dm6]	T	C	1.974e^-5	0.319	SYNONYMOUS_CODING CG42592 UTR_5_PRIME CG15510 UPSTREAM Atg16 & 1 other	TF binding site mE1_TFBS_HSA
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	1.995e^-5	0.319	DOWNSTREAM Mks1 INTERGENIC
3R	25661641	3R_25661641_SNP [dm3] 3R_29835919_SNP [dm6]	C	T	2.004e^-5	0.319	NON_SYNONYMOUS_CODING CG42592 UPSTREAM CG15510 & 1 other	TF binding site mE1_TFBS_HSA
2R	12013947	2R_12013947_SNP [dm3] 2R_16126442_SNP [dm6]	G	A	2.024e^-5	0.319	INTRON spin	TF binding site BDTNP1_TFBS_dl
3R	15137459	3R_15137459_SNP [dm3] 3R_19311737_SNP [dm6]	C	A	2.049e^-5	0.319	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19032439	2R_19032439_SNP [dm3] 2R_23144916_SNP [dm6]	C	T	2.074e^-5	0.319	DOWNSTREAM Klp59D INTERGENIC
X	12579839	X_12579839_SNP [dm3] X_12685806_SNP [dm6]	T	A	2.074e^-5	0.319	UTR_3_PRIME Smr DOWNSTREAM Smr
2R	18490345	2R_18490345_SNP [dm3] 2R_22602840_SNP [dm6]	C	A	2.084e^-5	0.319	NON_SYNONYMOUS_CODING CG4294
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	2.135e^-5	0.319	UPSTREAM CG10597 INTERGENIC
2L	17468174	2L_17468174_DEL [dm3] 2L_17468174_DEL [dm6]	TAGTA	T	2.153e^-5	0.319	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	498822	2L_498822_SNP [dm3] 2L_498822_SNP [dm6]	T	G	2.170e^-5	0.319	INTRON ush
2L	21994306	2L_21994306_SNP [dm3] 2L_21994306_SNP [dm6]	C	T	2.196e^-5	0.319	INTERGENIC	transposable element FlyBase
2R	17048640	2R_17048640_SNP [dm3] 2R_21161135_SNP [dm6]	A	T	2.200e^-5	0.319	UPSTREAM CG30389 & 2 others DOWNSTREAM tRNA:G3:57BCa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10229172	2R_10229172_SNP [dm3] 2R_14341667_SNP [dm6]	T	C	2.207e^-5	0.319	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3R	25661649	3R_25661649_SNP [dm3] 3R_29835927_SNP [dm6]	A	C	2.212e^-5	0.319	NON_SYNONYMOUS_CODING CG42592 UPSTREAM CG15510 & 1 other	TF binding site mE1_TFBS_HSA
3L	15932494	3L_15932494_SNP [dm3] 3L_15939394_SNP [dm6]	G	A	2.225e^-5	0.319	INTRON Pka-C3
3R	14967424	3R_14967424_SNP [dm3] 3R_19141702_SNP [dm6]	C	G	2.231e^-5	0.319	INTRON Ppcs
2L	3637586	2L_3637586_SNP [dm3] 2L_3637586_SNP [dm6]	C	T	2.295e^-5	0.321	UPSTREAM mir-4972 INTRON for
X	3645811	X_3645811_SNP [dm3] X_3751778_SNP [dm6]	A	T	2.303e^-5	0.321	INTRON tlk
3L	9132999	3L_9132999_SNP [dm3] 3L_9139899_SNP [dm6]	T	A	2.324e^-5	0.321	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad
3L	2184100	3L_2184100_SNP [dm3] 3L_2184100_SNP [dm6]	T	C	2.362e^-5	0.321	INTERGENIC
2L	5871678	2L_5871678_SNP [dm3] 2L_5871678_SNP [dm6]	G	A	2.369e^-5	0.321	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	11702850	2R_11702850_SNP [dm3] 2R_15815345_SNP [dm6]	A	G	2.422e^-5	0.321	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11769757	2R_11769757_SNP [dm3] 2R_15882252_SNP [dm6]	G	T	2.442e^-5	0.321	INTRON sli
X	20847281	X_20847281_SNP [dm3] X_20976254_SNP [dm6]	C	A	2.469e^-5	0.321	INTERGENIC
2R	17278083	2R_17278083_SNP [dm3] 2R_21390578_SNP [dm6]	A	G	2.473e^-5	0.321	SPLICE_SITE_REGION Acox57D-d INTRON Acox57D-d	TF binding site mE1_TFBS_cad
3L	1630239	3L_1630239_SNP [dm3] 3L_1630239_SNP [dm6]	G	A	2.488e^-5	0.321	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
2L	10938672	2L_10938672_SNP [dm3] 2L_10938672_SNP [dm6]	C	G	2.496e^-5	0.321	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16368077	2L_16368077_SNP [dm3] 2L_16368077_SNP [dm6]	C	T	2.551e^-5	0.321	INTERGENIC
3L	7185008	3L_7185008_SNP [dm3] 3L_7191908_SNP [dm6]	C	G	2.576e^-5	0.321	INTERGENIC
3R	22640086	3R_22640086_SNP [dm3] 3R_26814364_SNP [dm6]	C	T	2.579e^-5	0.321	INTRON Tl
3L	1801338	3L_1801338_SNP [dm3] 3L_1801338_SNP [dm6]	G	A	2.587e^-5	0.321	SYNONYMOUS_CODING Patj DOWNSTREAM JTBR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11619123	2R_11619123_SNP [dm3] 2R_15731618_SNP [dm6]	G	A	2.589e^-5	0.321	INTRON CG30089
X	20849560	X_20849560_SNP [dm3] X_20978533_SNP [dm6]	C	A	2.598e^-5	0.321	SYNONYMOUS_CODING CG44426
3R	25465919	3R_25465919_SNP [dm3] 3R_29640197_SNP [dm6]	G	A	2.606e^-5	0.321	INTRON Dop1R2
2R	10829718	2R_10829718_SNP [dm3] 2R_14942213_SNP [dm6]	T	A	2.625e^-5	0.321	UPSTREAM CG10257 INTERGENIC
2L	10938670	2L_10938670_SNP [dm3] 2L_10938670_SNP [dm6]	T	C	2.626e^-5	0.321	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17125766	X_17125766_SNP [dm3] X_17231733_SNP [dm6]	G	A	2.657e^-5	0.321	UPSTREAM CG10597 INTERGENIC
3R	24646602	3R_24646602_SNP [dm3] 3R_28820880_SNP [dm6]	G	T	2.661e^-5	0.321	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_ttk
3L	9651395	3L_9651395_SNP [dm3] 3L_9658295_SNP [dm6]	C	A	2.665e^-5	0.321	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3L	12977310	3L_12977310_SNP [dm3] 3L_12984210_SNP [dm6]	G	A	2.700e^-5	0.321	INTERGENIC
X	20878472	X_20878472_SNP [dm3] X_21007445_SNP [dm6]	G	A	2.711e^-5	0.321	INTERGENIC
X	16083283	X_16083283_SNP [dm3] X_16189250_SNP [dm6]	C	T	2.735e^-5	0.321	INTERGENIC
2L	2966746	2L_2966746_SNP [dm3] 2L_2966746_SNP [dm6]	A	G	2.767e^-5	0.321	UTR_3_PRIME Rbp9
3L	21326604	3L_21326604_SNP [dm3] 3L_21333504_SNP [dm6]	C	T	2.786e^-5	0.321	INTRON Rab26
3R	13970246	3R_13970246_SNP [dm3] 3R_18144524_SNP [dm6]	G	T	2.825e^-5	0.321	INTERGENIC
3R	24573625	3R_24573625_SNP [dm3] 3R_28747903_SNP [dm6]	C	T	2.839e^-5	0.321	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4126237	2L_4126237_SNP [dm3] 2L_4126237_SNP [dm6]	G	A	2.855e^-5	0.321	INTERGENIC
3R	15148541	3R_15148541_SNP [dm3] 3R_19322819_SNP [dm6]	A	G	2.888e^-5	0.321	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13914390	3L_13914390_SNP [dm3] 3L_13921290_SNP [dm6]	T	C	2.894e^-5	0.321	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	8884677	X_8884677_SNP [dm3] X_8990644_SNP [dm6]	A	T	2.920e^-5	0.321	INTRON rdgA & 1 other
2R	14808802	2R_14808802_SNP [dm3] 2R_18921297_SNP [dm6]	C	G	2.927e^-5	0.321	INTRON sano
X	20851446	X_20851446_SNP [dm3] X_20980419_SNP [dm6]	T	C	2.969e^-5	0.321	INTERGENIC
3L	14346393	3L_14346393_INS [dm3] 3L_14353293_INS [dm6]	T	TT	2.985e^-5	0.321	INTRON fz
3L	14242380	3L_14242380_SNP [dm3] 3L_14249280_SNP [dm6]	C	T	3.056e^-5	0.321	INTERGENIC
3L	8139017	3L_8139017_SNP [dm3] 3L_8145917_SNP [dm6]	T	C	3.064e^-5	0.321	SYNONYMOUS_CODING CG13676
X	7511324	X_7511324_SNP [dm3] X_7617291_SNP [dm6]	G	C	3.073e^-5	0.321	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5839919	3L_5839919_SNP [dm3] 3L_5846819_SNP [dm6]	C	G	3.095e^-5	0.321	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7125197	2R_7125197_SNP [dm3] 2R_11237692_SNP [dm6]	A	G	3.119e^-5	0.321	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18040466	3R_18040466_SNP [dm3] 3R_22214744_SNP [dm6]	G	C	3.127e^-5	0.321	NON_SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_inv
3R	23573825	3R_23573825_SNP [dm3] 3R_27748103_SNP [dm6]	T	A	3.170e^-5	0.321	UTR_3_PRIME Ets98B DOWNSTREAM Ets98B
X	8884674	X_8884674_SNP [dm3] X_8990641_SNP [dm6]	T	A	3.172e^-5	0.321	INTRON rdgA & 1 other
3R	25595117	3R_25595117_SNP [dm3] 3R_29769395_SNP [dm6]	T	C	3.175e^-5	0.321	INTRON kay
2L	18433762	2L_18433762_SNP [dm3] 2L_18433762_SNP [dm6]	C	T	3.180e^-5	0.321	EXON CR44488
3R	4964567	3R_4964567_SNP [dm3] 3R_9138845_SNP [dm6]	C	T	3.181e^-5	0.321	INTRON pum
3L	9618671	3L_9618671_SNP [dm3] 3L_9625571_SNP [dm6]	T	C	3.199e^-5	0.321	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26807362	3R_26807362_SNP [dm3] 3R_30981640_SNP [dm6]	T	C	3.244e^-5	0.321	INTRON 5-HT7
2L	3637581	2L_3637581_SNP [dm3] 2L_3637581_SNP [dm6]	G	A	3.256e^-5	0.321	UPSTREAM mir-4972 INTRON for
3R	26808878	3R_26808878_SNP [dm3] 3R_30983156_SNP [dm6]	G	T	3.259e^-5	0.321	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14051810	3L_14051810_SNP [dm3] 3L_14058710_SNP [dm6]	C	A	3.272e^-5	0.321	INTRON CG32138
X	4525262	X_4525262_SNP [dm3] X_4631229_SNP [dm6]	C	T	3.277e^-5	0.321	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
X	7511177	X_7511177_SNP [dm3] X_7617144_SNP [dm6]	G	A	3.282e^-5	0.321	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13108620	2L_13108620_SNP [dm3] 2L_13108620_SNP [dm6]	G	T	3.282e^-5	0.321	SYNONYMOUS_CODING CG5142
3R	15071168	3R_15071168_SNP [dm3] 3R_19245446_SNP [dm6]	G	A	3.283e^-5	0.321	INTRON unc79
X	20877685	X_20877685_SNP [dm3] X_21006658_SNP [dm6]	C	T	3.286e^-5	0.321	INTERGENIC
3R	15071260	3R_15071260_DEL [dm3] 3R_19245538_DEL [dm6]	CTATAGA	T	3.289e^-5	0.321	SPLICE_SITE_REGION unc79 INTRON unc79
2R	16060967	2R_16060967_SNP [dm3] 2R_20173462_SNP [dm6]	G	C	3.294e^-5	0.321	INTERGENIC
2L	12038772	2L_12038772_SNP [dm3] 2L_12038772_SNP [dm6]	A	G	3.296e^-5	0.321	UTR_3_PRIME CG6766 UPSTREAM Tom70	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7474312	2R_7474312_SNP [dm3] 2R_11586807_SNP [dm6]	T	C	3.339e^-5	0.321	SYNONYMOUS_CODING tou
2L	10306758	2L_10306758_SNP [dm3] 2L_10306758_SNP [dm6]	C	A	3.342e^-5	0.321	UPSTREAM CG4968 & 1 other INTERGENIC
3R	23784075	3R_23784075_SNP [dm3] 3R_27958353_SNP [dm6]	T	C	3.351e^-5	0.321	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23784084	3R_23784084_SNP [dm3] 3R_27958362_SNP [dm6]	A	T	3.351e^-5	0.321	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7125139	2R_7125139_SNP [dm3] 2R_11237634_SNP [dm6]	A	G	3.394e^-5	0.322	UTR_5_PRIME CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18229543	2L_18229543_SNP [dm3] 2L_18229543_SNP [dm6]	C	T	3.428e^-5	0.322	INTRON CG42750
2R	3647999	2R_3647999_SNP [dm3] 2R_7760494_SNP [dm6]	A	T	3.443e^-5	0.322	INTRON CG30497 & 1 other
2L	12201550	2L_12201550_SNP [dm3] 2L_12201550_SNP [dm6]	C	A	3.446e^-5	0.322	UTR_5_PRIME aret INTRON aret
2L	3374498	2L_3374498_SNP [dm3] 2L_3374498_SNP [dm6]	C	T	3.457e^-5	0.322	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16061592	2R_16061592_SNP [dm3] 2R_20174087_SNP [dm6]	A	C	3.486e^-5	0.322	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14912738	2L_14912738_DEL [dm3] 2L_14912738_DEL [dm6]	AA	A	3.486e^-5	0.322	INTRON CG42313
3L	14051814	3L_14051814_SNP [dm3] 3L_14058714_SNP [dm6]	A	G	3.514e^-5	0.323	INTRON CG32138
2R	9243510	2R_9243510_SNP [dm3] 2R_13356005_SNP [dm6]	C	T	3.577e^-5	0.326	INTERGENIC
3L	9618688	3L_9618688_SNP [dm3] 3L_9625588_SNP [dm6]	A	C	3.580e^-5	0.326	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19672392	2R_19672392_SNP [dm3] 2R_23784869_SNP [dm6]	C	T	3.600e^-5	0.326	INTRON CG9850
2L	18424923	2L_18424923_SNP [dm3] 2L_18424923_SNP [dm6]	G	A	3.617e^-5	0.326	INTERGENIC
3R	25025473	3R_25025473_SNP [dm3] 3R_29199751_SNP [dm6]	C	T	3.646e^-5	0.326	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13886903	2R_13886903_SNP [dm3] 2R_17999398_SNP [dm6]	A	T	3.649e^-5	0.326	INTRON dpr13
3L	15512416	3L_15512416_SNP [dm3] 3L_15519316_SNP [dm6]	T	A	3.666e^-5	0.326	UPSTREAM mex1 DOWNSTREAM CR43159 INTRON mex1
2R	5305386	2R_5305386_SNP [dm3] 2R_9417881_SNP [dm6]	T	A	3.729e^-5	0.328	DOWNSTREAM wun2 INTERGENIC
X	8884665	X_8884665_SNP [dm3] X_8990632_SNP [dm6]	C	A	3.730e^-5	0.328	INTRON rdgA & 1 other
3L	11193621	3L_11193621_SNP [dm3] 3L_11200521_SNP [dm6]	A	C	3.740e^-5	0.328	UTR_3_PRIME CG7607 UPSTREAM CG14141 INTRON Plod
2L	19333222	2L_19333222_SNP [dm3] 2L_19333222_SNP [dm6]	A	G	3.789e^-5	0.331	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15448961	3R_15448961_SNP [dm3] 3R_19623239_SNP [dm6]	C	T	3.830e^-5	0.333	INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	3645975	X_3645975_SNP [dm3] X_3751942_SNP [dm6]	C	G	3.864e^-5	0.334	INTRON tlk
3L	15622469	3L_15622469_SNP [dm3] 3L_15629369_SNP [dm6]	G	C	3.914e^-5	0.336	INTRON comm3
2R	7473880	2R_7473880_SNP [dm3] 2R_11586375_SNP [dm6]	T	G	3.922e^-5	0.336	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7453432	3L_7453432_SNP [dm3] 3L_7460332_SNP [dm6]	A	G	3.943e^-5	0.336	INTERGENIC
2L	3698933	2L_3698933_SNP [dm3] 2L_3698933_SNP [dm6]	A	G	3.971e^-5	0.337	SYNONYMOUS_CODING CG10031 UPSTREAM CG42464
2L	9731153	2L_9731153_SNP [dm3] 2L_9731153_SNP [dm6]	T	G	3.994e^-5	0.337	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14349948	3L_14349948_SNP [dm3] 3L_14356848_SNP [dm6]	T	C	4.004e^-5	0.337	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12061160	2R_12061160_SNP [dm3] 2R_16173655_SNP [dm6]	C	G	4.055e^-5	0.34	SPLICE_SITE_REGION Ptp52F INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6342745	2L_6342745_SNP [dm3] 2L_6342745_SNP [dm6]	C	A	4.112e^-5	0.34	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	15932419	3L_15932419_DEL [dm3] 3L_15939319_DEL [dm6]	ATATA	A	4.122e^-5	0.34	INTRON Pka-C3
3L	9618667	3L_9618667_SNP [dm3] 3L_9625567_SNP [dm6]	T	A	4.133e^-5	0.34	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	16083152	X_16083152_SNP [dm3] X_16189119_SNP [dm6]	G	A	4.134e^-5	0.34	INTERGENIC
2R	13886902	2R_13886902_SNP [dm3] 2R_17999397_SNP [dm6]	T	G	4.173e^-5	0.342	INTRON dpr13
3R	5154856	3R_5154856_SNP [dm3] 3R_9329134_SNP [dm6]	T	C	4.252e^-5	0.344	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	15266335	3L_15266335_SNP [dm3] 3L_15273235_SNP [dm6]	C	A	4.265e^-5	0.344	INTERGENIC
2L	13688435	2L_13688435_SNP [dm3] 2L_13688435_SNP [dm6]	T	C	4.270e^-5	0.344	INTRON CG31814
3R	25254416	3R_25254416_SNP [dm3] 3R_29428694_SNP [dm6]	A	G	4.318e^-5	0.344	INTRON Ptp99A
3R	24496065	3R_24496065_SNP [dm3] 3R_28670343_SNP [dm6]	G	T	4.319e^-5	0.344	NON_SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
2R	15947509	2R_15947509_SNP [dm3] 2R_20060004_SNP [dm6]	C	A	4.342e^-5	0.344	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9681279	2R_9681279_SNP [dm3] 2R_13793774_SNP [dm6]	G	A	4.385e^-5	0.344	INTERGENIC
2R	10829722	2R_10829722_SNP [dm3] 2R_14942217_SNP [dm6]	A	G	4.396e^-5	0.344	UPSTREAM CG10257 INTERGENIC
3R	25639653	3R_25639653_SNP [dm3] 3R_29813931_SNP [dm6]	C	A	4.396e^-5	0.344	NON_SYNONYMOUS_CODING ca DOWNSTREAM Vps16B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	8812843	X_8812843_SNP [dm3] X_8918810_SNP [dm6]	G	T	4.405e^-5	0.344	DOWNSTREAM CR44111 INTRON rdgA
3R	25595061	3R_25595061_SNP [dm3] 3R_29769339_SNP [dm6]	G	C	4.506e^-5	0.344	INTRON kay
2R	7491896	2R_7491896_SNP [dm3] 2R_11604391_SNP [dm6]	G	A	4.545e^-5	0.344	INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15946801	3R_15946801_SNP [dm3] 3R_20121079_SNP [dm6]	A	G	4.548e^-5	0.344	NON_SYNONYMOUS_CODING Gr92a
3L	15095626	3L_15095626_SNP [dm3] 3L_15102526_SNP [dm6]	C	T	4.553e^-5	0.344	UPSTREAM CR43972 INTRON CTPsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20158867	2R_20158867_SNP [dm3] 2R_24271344_SNP [dm6]	G	C	4.595e^-5	0.344	INTERGENIC
3L	8729191	3L_8729191_SNP [dm3] 3L_8736091_SNP [dm6]	C	T	4.643e^-5	0.344	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	8729201	3L_8729201_SNP [dm3] 3L_8736101_SNP [dm6]	A	T	4.643e^-5	0.344	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
2L	4010943	2L_4010943_SNP [dm3] 2L_4010943_SNP [dm6]	G	A	4.649e^-5	0.344	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3374474	2L_3374474_SNP [dm3] 2L_3374474_SNP [dm6]	A	G	4.650e^-5	0.344	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16547658	3L_16547658_SNP [dm3] 3L_16554558_SNP [dm6]	T	C	4.667e^-5	0.344	INTERGENIC
3R	15137469	3R_15137469_SNP [dm3] 3R_19311747_SNP [dm6]	T	C	4.675e^-5	0.344	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6287392	2L_6287392_SNP [dm3] 2L_6287392_SNP [dm6]	T	G	4.685e^-5	0.344	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
2L	1722348	2L_1722348_SNP [dm3] 2L_1722348_SNP [dm6]	A	G	4.687e^-5	0.344	INTRON Rim2
X	11001219	X_11001219_SNP [dm3] X_11107186_SNP [dm6]	C	T	4.698e^-5	0.344	SPLICE_SITE_REGION CG42249 DOWNSTREAM CG42249 INTRON CG42249
3R	14174901	3R_14174901_SNP [dm3] 3R_18349179_SNP [dm6]	C	T	4.712e^-5	0.344	INTRON CG15803
3R	14174907	3R_14174907_SNP [dm3] 3R_18349185_SNP [dm6]	G	C	4.712e^-5	0.344	INTRON CG15803
X	20849412	X_20849412_SNP [dm3] X_20978385_SNP [dm6]	C	T	4.716e^-5	0.344	NON_SYNONYMOUS_CODING CG44426
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	4.718e^-5	0.344	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19674053	2R_19674053_SNP [dm3] 2R_23786530_SNP [dm6]	C	T	4.770e^-5	0.344	INTRON CG9850
3L	20909299	3L_20909299_SNP [dm3] 3L_20916199_SNP [dm6]	T	A	4.782e^-5	0.344	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13480612	3L_13480612_SNP [dm3] 3L_13487512_SNP [dm6]	C	T	4.785e^-5	0.344	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	9681238	2R_9681238_INS [dm3] 2R_13793733_INS [dm6]	A	AAATAGA	4.826e^-5	0.344	INTERGENIC
3L	16877889	3L_16877889_SNP [dm3] 3L_16884789_SNP [dm6]	G	A	4.838e^-5	0.344	INTRON Lmpt
3L	13453169	3L_13453169_SNP [dm3] 3L_13460069_SNP [dm6]	G	A	4.876e^-5	0.344	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3645832	X_3645832_SNP [dm3] X_3751799_SNP [dm6]	A	T	4.881e^-5	0.344	INTRON tlk
2L	3381635	2L_3381635_SNP [dm3] 2L_3381635_SNP [dm6]	A	T	4.881e^-5	0.344	INTERGENIC
2L	4323153	2L_4323153_SNP [dm3] 2L_4323153_SNP [dm6]	C	T	4.888e^-5	0.344	UTR_3_PRIME tutl
X	12602881	X_12602881_SNP [dm3] X_12708848_SNP [dm6]	G	A	4.901e^-5	0.344	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13468804	3L_13468804_SNP [dm3] 3L_13475704_SNP [dm6]	A	T	4.930e^-5	0.344	UPSTREAM CG10089 INTERGENIC
2R	18156587	2R_18156587_SNP [dm3] 2R_22269082_SNP [dm6]	C	T	4.964e^-5	0.344	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13470036	3L_13470036_SNP [dm3] 3L_13476936_SNP [dm6]	A	G	4.967e^-5	0.344	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	3645830	X_3645830_SNP [dm3] X_3751797_SNP [dm6]	A	G	4.974e^-5	0.344	INTRON tlk
2L	18906773	2L_18906773_SNP [dm3] 2L_18906773_SNP [dm6]	T	A	5.024e^-5	0.346	DOWNSTREAM CR44738 INTERGENIC
2L	6735106	2L_6735106_SNP [dm3] 2L_6735106_SNP [dm6]	T	C	5.042e^-5	0.346	SYNONYMOUS_CODING TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13453182	3L_13453182_SNP [dm3] 3L_13460082_SNP [dm6]	A	G	5.071e^-5	0.347	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15146490	3R_15146490_SNP [dm3] 3R_19320768_SNP [dm6]	G	A	5.096e^-5	0.348	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10323543	2L_10323543_SNP [dm3] 2L_10323543_SNP [dm6]	T	C	5.157e^-5	0.35	UTR_5_PRIME CG4995 UPSTREAM CG5381 INTRON CG4995	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16244296	2R_16244296_SNP [dm3] 2R_20356791_SNP [dm6]	C	G	5.172e^-5	0.35	INTERGENIC
2L	10070174	2L_10070174_SNP [dm3] 2L_10070174_SNP [dm6]	T	A	5.206e^-5	0.351	INTRON CG44153
3R	6322659	3R_6322659_INS [dm3] 3R_10496937_INS [dm6]	T	TGATATTTTAAGTCTGATA...	5.237e^-5	0.352	INTERGENIC
3L	10530245	3L_10530245_SNP [dm3] 3L_10537145_SNP [dm6]	T	A	5.302e^-5	0.354	INTRON A2bp1
3L	13954469	3L_13954469_SNP [dm3] 3L_13961369_SNP [dm6]	G	A	5.319e^-5	0.354	SYNONYMOUS_CODING CG32137	TF binding site BDTNP1_TFBS_hb
3R	24804941	3R_24804941_SNP [dm3] 3R_28979219_SNP [dm6]	A	T	5.323e^-5	0.354	INTERGENIC
3R	10648590	3R_10648590_SNP [dm3] 3R_14822868_SNP [dm6]	G	A	5.430e^-5	0.355	INTRON btsz	TF binding site mE1_TFBS_bab1
2R	9672807	2R_9672807_INS [dm3] 2R_13785302_INS [dm6]	A	AA	5.485e^-5	0.355	DOWNSTREAM CR43810 INTRON Cpr50Ca
3R	14967397	3R_14967397_SNP [dm3] 3R_19141675_SNP [dm6]	G	T	5.491e^-5	0.355	INTRON Ppcs
3R	14967399	3R_14967399_DEL [dm3] 3R_19141677_DEL [dm6]	GAA	T	5.491e^-5	0.355	INTRON Ppcs
3R	26178740	3R_26178740_SNP [dm3] 3R_30353018_SNP [dm6]	G	C	5.507e^-5	0.355	INTRON hdc
2R	5305391	2R_5305391_SNP [dm3] 2R_9417886_SNP [dm6]	A	T	5.525e^-5	0.355	DOWNSTREAM wun2 INTERGENIC
3L	15620653	3L_15620653_SNP [dm3] 3L_15627553_SNP [dm6]	G	T	5.527e^-5	0.355	INTRON comm3
2R	10829726	2R_10829726_SNP [dm3] 2R_14942221_SNP [dm6]	T	A	5.537e^-5	0.355	UPSTREAM CG10257 INTERGENIC
3R	14967440	3R_14967440_SNP [dm3] 3R_19141718_SNP [dm6]	G	T	5.540e^-5	0.355	INTRON Ppcs
2R	4643936	2R_4643936_SNP [dm3] 2R_8756431_SNP [dm6]	T	G	5.544e^-5	0.355	INTRON CG8740	TF binding site mE1_TFBS_chinmo
3L	2331125	3L_2331125_SNP [dm3] 3L_2331125_SNP [dm6]	T	A	5.553e^-5	0.355	INTRON MsR1
3L	8729184	3L_8729184_SNP [dm3] 3L_8736084_SNP [dm6]	T	G	5.571e^-5	0.355	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	15898179	3L_15898179_SNP [dm3] 3L_15905079_SNP [dm6]	A	C	5.633e^-5	0.357	INTRON sff
2L	6288513	2L_6288513_DEL [dm3] 2L_6288513_DEL [dm6]	TA	T	5.662e^-5	0.357	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
3R	26821398	3R_26821398_SNP [dm3] 3R_30995676_SNP [dm6]	A	G	5.674e^-5	0.357	INTRON 5-HT7
3L	9591316	3L_9591316_SNP [dm3] 3L_9598216_SNP [dm6]	T	C	5.678e^-5	0.357	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19504067	2R_19504067_SNP [dm3] 2R_23616544_SNP [dm6]	T	A	5.688e^-5	0.357	NON_SYNONYMOUS_CODING CG17664
3R	16138888	3R_16138888_SNP [dm3] 3R_20313166_SNP [dm6]	A	C	5.706e^-5	0.357	INTRON CG42668
3L	11333866	3L_11333866_SNP [dm3] 3L_11340766_SNP [dm6]	A	G	5.724e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16082974	X_16082974_SNP [dm3] X_16188941_SNP [dm6]	A	T	5.758e^-5	0.358	INTERGENIC
3R	22760101	3R_22760101_SNP [dm3] 3R_26934379_SNP [dm6]	T	A	5.777e^-5	0.358	INTRON sda
2R	10354654	2R_10354654_SNP [dm3] 2R_14467149_SNP [dm6]	A	C	5.826e^-5	0.358	INTERGENIC
2R	11605566	2R_11605566_SNP [dm3] 2R_15718061_SNP [dm6]	C	T	5.827e^-5	0.358	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14967381	3R_14967381_SNP [dm3] 3R_19141659_SNP [dm6]	T	C	5.914e^-5	0.36	INTRON Ppcs
3R	14967389	3R_14967389_DEL [dm3] 3R_19141667_DEL [dm6]	GG	T	5.914e^-5	0.36	INTRON Ppcs
3R	14967396	3R_14967396_SNP [dm3] 3R_19141674_SNP [dm6]	G	A	5.914e^-5	0.36	INTRON Ppcs
3R	26321500	3R_26321500_SNP [dm3] 3R_30495778_SNP [dm6]	A	T	5.986e^-5	0.363	DOWNSTREAM PH4alphaNE1 INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
2R	12013949	2R_12013949_SNP [dm3] 2R_16126444_SNP [dm6]	C	T	6.033e^-5	0.365	INTRON spin	TF binding site BDTNP1_TFBS_dl
3R	26705915	3R_26705915_SNP [dm3] 3R_30880193_SNP [dm6]	A	T	6.095e^-5	0.365	INTRON CG12071
2R	1671346	2R_1671346_SNP [dm3] 2R_5783841_SNP [dm6]	C	G	6.096e^-5	0.365	UPSTREAM ZnT41F INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	14984104	2R_14984104_SNP [dm3] 2R_19096599_SNP [dm6]	C	G	6.098e^-5	0.365	UPSTREAM Ir56a INTRON 5-HT1A
2L	19419349	2L_19419349_SNP [dm3] 2L_19419349_SNP [dm6]	C	T	6.163e^-5	0.367	NON_SYNONYMOUS_CODING lectin-37Db DOWNSTREAM lectin-37Da INTRON Pax
3R	17388111	3R_17388111_SNP [dm3] 3R_21562389_SNP [dm6]	A	G	6.196e^-5	0.367	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	12579985	X_12579985_SNP [dm3] X_12685952_SNP [dm6]	G	A	6.207e^-5	0.367	UTR_3_PRIME Smr DOWNSTREAM Smr
3R	12942468	3R_12942468_SNP [dm3] 3R_17116746_SNP [dm6]	T	A	6.211e^-5	0.367	INTRON cher	TF binding site mE1_TFBS_sens
3L	4387877	3L_4387877_SNP [dm3] 3L_4387877_SNP [dm6]	A	T	6.248e^-5	0.367	INTRON slow
2L	8283458	2L_8283458_SNP [dm3] 2L_8283458_SNP [dm6]	T	G	6.332e^-5	0.367	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3R	25139110	3R_25139110_SNP [dm3] 3R_29313388_SNP [dm6]	A	T	6.335e^-5	0.367	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15613202	3R_15613202_SNP [dm3] 3R_19787480_SNP [dm6]	A	G	6.340e^-5	0.367	INTERGENIC
2R	7503507	2R_7503507_SNP [dm3] 2R_11616002_SNP [dm6]	G	A	6.346e^-5	0.367	UTR_5_PRIME tou UPSTREAM CR43907 DOWNSTREAM Egm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	19377247	2L_19377247_SNP [dm3] 2L_19377247_SNP [dm6]	C	A	6.350e^-5	0.367	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15533435	2L_15533435_SNP [dm3] 2L_15533435_SNP [dm6]	C	A	6.351e^-5	0.367	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16999397	2R_16999397_SNP [dm3] 2R_21111892_SNP [dm6]	A	G	6.353e^-5	0.367	INTRON ktub
3R	15136988	3R_15136988_INS [dm3] 3R_19311266_INS [dm6]	T	TT	6.470e^-5	0.372	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	10596183	2R_10596183_SNP [dm3] 2R_14708678_SNP [dm6]	G	T	6.487e^-5	0.372	INTRON mspo
3R	15068004	3R_15068004_SNP [dm3] 3R_19242282_SNP [dm6]	A	G	6.540e^-5	0.373	UTR_3_PRIME unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18680420	3L_18680420_DEL [dm3] 3L_18687320_DEL [dm6]	AA	A	6.541e^-5	0.373	INTERGENIC
2L	17670250	2L_17670250_SNP [dm3] 2L_17670250_SNP [dm6]	A	C	6.590e^-5	0.374	INTRON CadN
2L	14606774	2L_14606774_SNP [dm3] 2L_14606774_SNP [dm6]	T	G	6.600e^-5	0.374	INTRON osp
2R	10464002	2R_10464002_INS [dm3] 2R_14576497_INS [dm6]	A	AATGAA	6.856e^-5	0.386	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15914176	3L_15914176_SNP [dm3] 3L_15921076_SNP [dm6]	T	C	6.861e^-5	0.386	INTRON sff	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	14931678	3R_14931678_SNP [dm3] 3R_19105956_SNP [dm6]	C	G	6.880e^-5	0.386	INTRON CG6040
2L	14912715	2L_14912715_INS [dm3] 2L_14912715_INS [dm6]	A	ACTTTTGA	6.908e^-5	0.386	INTRON CG42313
2R	11607394	2R_11607394_SNP [dm3] 2R_15719889_SNP [dm6]	G	A	6.912e^-5	0.386	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25595048	3R_25595048_SNP [dm3] 3R_29769326_SNP [dm6]	C	G	6.928e^-5	0.386	INTRON kay
2L	9551789	2L_9551789_SNP [dm3] 2L_9551789_SNP [dm6]	A	T	7.034e^-5	0.39	SYNONYMOUS_CODING jp UPSTREAM jp	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14242399	3L_14242399_SNP [dm3] 3L_14249299_SNP [dm6]	T	C	7.072e^-5	0.391	INTERGENIC
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	7.096e^-5	0.391	SYNONYMOUS_CODING Plod
X	16758847	X_16758847_DEL [dm3] X_16864814_DEL [dm6]	TATATCCATCCAT...	T	7.126e^-5	0.391	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	13171424	2L_13171424_SNP [dm3] 2L_13171424_SNP [dm6]	C	G	7.169e^-5	0.391	SYNONYMOUS_CODING Sfmbt
2R	12393234	2R_12393234_DEL [dm3] 2R_16505729_DEL [dm6]	CAC	C	7.177e^-5	0.391	INTRON Sema-2a
3L	3953888	3L_3953888_SNP [dm3] 3L_3953888_SNP [dm6]	C	G	7.190e^-5	0.391	DOWNSTREAM CG12605 INTERGENIC
2R	4564320	2R_4564320_SNP [dm3] 2R_8676815_SNP [dm6]	C	T	7.199e^-5	0.391	UPSTREAM CG30354 INTRON Acsl
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	7.226e^-5	0.391	INTRON Mhc
2R	7471405	2R_7471405_SNP [dm3] 2R_11583900_SNP [dm6]	C	T	7.235e^-5	0.391	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15248471	3L_15248471_SNP [dm3] 3L_15255371_SNP [dm6]	T	A	7.280e^-5	0.391	INTERGENIC
3L	6754241	3L_6754241_SNP [dm3] 3L_6761141_SNP [dm6]	A	T	7.297e^-5	0.391	UPSTREAM CG32392 INTRON CG32392
2R	18614850	2R_18614850_SNP [dm3] 2R_22727345_SNP [dm6]	G	A	7.311e^-5	0.391	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	3645893	X_3645893_SNP [dm3] X_3751860_SNP [dm6]	C	T	7.319e^-5	0.391	INTRON tlk
3L	13469152	3L_13469152_SNP [dm3] 3L_13476052_SNP [dm6]	A	T	7.360e^-5	0.392	INTERGENIC
X	12602878	X_12602878_SNP [dm3] X_12708845_SNP [dm6]	A	T	7.411e^-5	0.392	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25323368	3R_25323368_SNP [dm3] 3R_29497646_SNP [dm6]	C	T	7.418e^-5	0.392	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23235845	3R_23235845_SNP [dm3] 3R_27410123_SNP [dm6]	A	T	7.418e^-5	0.392	INTRON side
2R	5239568	2R_5239568_SNP [dm3] 2R_9352063_SNP [dm6]	G	A	7.437e^-5	0.392	UPSTREAM CG13739 INTRON CG13954	TF binding site mE1_TFBS_cad
3L	14563623	3L_14563623_SNP [dm3] 3L_14570523_SNP [dm6]	A	T	7.511e^-5	0.394	INTERGENIC
3L	2544628	3L_2544628_SNP [dm3] 3L_2544628_SNP [dm6]	A	T	7.575e^-5	0.394	INTRON Spn
3L	7086920	3L_7086920_SNP [dm3] 3L_7093820_SNP [dm6]	G	T	7.616e^-5	0.394	UTR_3_PRIME Cpr65Ec UPSTREAM form3	TF binding site mE1_TFBS_HSA
2L	8304889	2L_8304889_SNP [dm3] 2L_8304889_SNP [dm6]	T	C	7.618e^-5	0.394	SYNONYMOUS_CODING Scgalpha UPSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	7.633e^-5	0.394	INTRON nwk
2R	4564130	2R_4564130_SNP [dm3] 2R_8676625_SNP [dm6]	A	G	7.673e^-5	0.394	UPSTREAM CG30354 INTRON Acsl
X	21364794	X_21364794_SNP [dm3] X_21493767_SNP [dm6]	T	C	7.698e^-5	0.394	INTERGENIC
3L	20917492	3L_20917492_SNP [dm3] 3L_20924392_SNP [dm6]	C	A	7.700e^-5	0.394	INTERGENIC
3R	14967439	3R_14967439_SNP [dm3] 3R_19141717_SNP [dm6]	A	T	7.712e^-5	0.394	INTRON Ppcs
2R	12924396	2R_12924396_SNP [dm3] 2R_17036891_SNP [dm6]	A	T	7.713e^-5	0.394	SYNONYMOUS_CODING RhoGEF2 EXON CR45144
2R	16192422	2R_16192422_SNP [dm3] 2R_20304917_SNP [dm6]	A	G	7.720e^-5	0.394	SYNONYMOUS_CODING CG11200
3L	9615480	3L_9615480_SNP [dm3] 3L_9622380_SNP [dm6]	C	T	7.740e^-5	0.394	INTRON LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13688466	2L_13688466_SNP [dm3] 2L_13688466_SNP [dm6]	C	T	7.776e^-5	0.395	INTRON CG31814
3R	25023505	3R_25023505_SNP [dm3] 3R_29197783_SNP [dm6]	C	T	7.796e^-5	0.395	SYNONYMOUS_CODING CG14515	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16244298	2R_16244298_DEL [dm3] 2R_20356793_DEL [dm6]	AAGGGCGA	A	7.822e^-5	0.395	INTERGENIC
2L	18424951	2L_18424951_SNP [dm3] 2L_18424951_SNP [dm6]	G	T	7.896e^-5	0.396	INTERGENIC
2L	22179780	2L_22179780_SNP [dm3] 2L_22179780_SNP [dm6]	G	A	7.910e^-5	0.396	INTRON CG3635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15266629	3L_15266629_SNP [dm3] 3L_15273529_SNP [dm6]	A	G	7.923e^-5	0.396	INTERGENIC
2L	11579881	2L_11579881_SNP [dm3] 2L_11579881_SNP [dm6]	A	G	7.963e^-5	0.396	INTERGENIC
3L	9619800	3L_9619800_SNP [dm3] 3L_9626700_SNP [dm6]	G	A	7.971e^-5	0.396	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
2L	173413	2L_173413_SNP [dm3] 2L_173413_SNP [dm6]	T	A	8.033e^-5	0.396	INTRON spen	TF binding site BDTNP1_TFBS_da
3L	1629536	3L_1629536_SNP [dm3] 3L_1629536_SNP [dm6]	A	T	8.044e^-5	0.396	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16333699	3L_16333699_SNP [dm3] 3L_16340599_SNP [dm6]	G	A	8.072e^-5	0.396	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20322647	X_20322647_SNP [dm3] X_20451620_SNP [dm6]	A	G	8.081e^-5	0.396	INTRON CG32506
3R	4274182	3R_4274182_SNP [dm3] 3R_8448460_SNP [dm6]	A	T	8.084e^-5	0.396	INTRON CG45263
3L	9618694	3L_9618694_SNP [dm3] 3L_9625594_SNP [dm6]	A	G	8.095e^-5	0.396	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15968108	2R_15968108_SNP [dm3] 2R_20080603_SNP [dm6]	C	T	8.110e^-5	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	13968375	2L_13968375_SNP [dm3] 2L_13968375_SNP [dm6]	A	G	8.134e^-5	0.396	SYNONYMOUS_CODING NimB4 UPSTREAM NimB3	TF binding site mE1_TFBS_cad
3R	16175101	3R_16175101_SNP [dm3] 3R_20349379_SNP [dm6]	T	C	8.155e^-5	0.396	INTERGENIC
3L	15932485	3L_15932485_SNP [dm3] 3L_15939385_SNP [dm6]	T	C	8.189e^-5	0.396	INTRON Pka-C3
2R	9755575	2R_9755575_SNP [dm3] 2R_13868070_SNP [dm6]	C	G	8.214e^-5	0.396	INTRON shot
X	16083306	X_16083306_SNP [dm3] X_16189273_SNP [dm6]	G	C	8.253e^-5	0.396	INTERGENIC
2R	20168435	2R_20168435_SNP [dm3] 2R_24280912_SNP [dm6]	G	A	8.263e^-5	0.396	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10146938	3L_10146938_SNP [dm3] 3L_10153838_SNP [dm6]	G	A	8.270e^-5	0.396	DOWNSTREAM CG8072 INTRON dpr10
2R	14984026	2R_14984026_INS [dm3] 2R_19096521_INS [dm6]	C	CTGGGAGCTACC...	8.281e^-5	0.396	UPSTREAM Ir56a INTRON 5-HT1A
3R	14931714	3R_14931714_SNP [dm3] 3R_19105992_SNP [dm6]	A	T	8.312e^-5	0.396	INTRON CG6040
2R	15885979	2R_15885979_SNP [dm3] 2R_19998474_SNP [dm6]	T	C	8.342e^-5	0.396	INTERGENIC
3L	9945600	3L_9945600_SNP [dm3] 3L_9952500_SNP [dm6]	T	G	8.356e^-5	0.396	INTRON CG34356
2R	9435719	2R_9435719_SNP [dm3] 2R_13548214_SNP [dm6]	A	G	8.402e^-5	0.396	UPSTREAM CG6145 DOWNSTREAM CG33156 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11165672	3L_11165672_SNP [dm3] 3L_11172572_SNP [dm6]	G	C	8.404e^-5	0.396	UPSTREAM CG14142 DOWNSTREAM CG7616 INTERGENIC
2L	10938544	2L_10938544_SNP [dm3] 2L_10938544_SNP [dm6]	A	C	8.404e^-5	0.396	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA
2L	16387880	2L_16387880_DEL [dm3] 2L_16387880_DEL [dm6]	CTCTCCCTAAAAC...	C	8.480e^-5	0.396	INTERGENIC
2L	13935271	2L_13935271_SNP [dm3] 2L_13935271_SNP [dm6]	A	T	8.536e^-5	0.396	UPSTREAM CG16885 INTRON Ance-3
X	3645829	X_3645829_SNP [dm3] X_3751796_SNP [dm6]	T	A	8.542e^-5	0.396	INTRON tlk
2L	11377676	2L_11377676_SNP [dm3] 2L_11377676_SNP [dm6]	T	G	8.578e^-5	0.396	INTERGENIC	regulatory region REDfly_CRMs
2L	11377681	2L_11377681_INS [dm3] 2L_11377681_INS [dm6]	A	AT	8.578e^-5	0.396	INTERGENIC	regulatory region REDfly_CRMs
2R	7471548	2R_7471548_SNP [dm3] 2R_11584043_SNP [dm6]	G	A	8.579e^-5	0.396	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14900768	2L_14900768_SNP [dm3] 2L_14900768_SNP [dm6]	A	G	8.591e^-5	0.396	INTERGENIC
3R	17388100	3R_17388100_SNP [dm3] 3R_21562378_SNP [dm6]	C	A	8.596e^-5	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6516102	2L_6516102_SNP [dm3] 2L_6516102_SNP [dm6]	A	T	8.604e^-5	0.396	INTRON CG31637
3R	26035592	3R_26035592_SNP [dm3] 3R_30209870_SNP [dm6]	G	A	8.626e^-5	0.396	UPSTREAM RpS7 & 1 other INTERGENIC
3L	5344366	3L_5344366_SNP [dm3] 3L_5351266_SNP [dm6]	G	T	8.635e^-5	0.396	INTRON lama
2L	3295878	2L_3295878_SNP [dm3] 2L_3295878_SNP [dm6]	C	T	8.668e^-5	0.396	SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13670915	3R_13670915_SNP [dm3] 3R_17845193_SNP [dm6]	C	T	8.692e^-5	0.396	INTRON tinc
X	20849408	X_20849408_SNP [dm3] X_20978381_SNP [dm6]	G	A	8.695e^-5	0.396	NON_SYNONYMOUS_CODING CG44426
2R	10659208	2R_10659208_SNP [dm3] 2R_14771703_SNP [dm6]	C	T	8.700e^-5	0.396	UPSTREAM CG42254 DOWNSTREAM kn INTRON BEAF-32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	15533431	2L_15533431_SNP [dm3] 2L_15533431_SNP [dm6]	C	A	8.764e^-5	0.397	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21338536	3L_21338536_SNP [dm3] 3L_21345436_SNP [dm6]	T	C	8.772e^-5	0.397	NON_SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9614565	3L_9614565_SNP [dm3] 3L_9621465_SNP [dm6]	C	G	8.777e^-5	0.397	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19636307	2R_19636307_SNP [dm3] 2R_23748784_SNP [dm6]	T	C	8.835e^-5	0.398	DOWNSTREAM CG13560 & 1 other INTERGENIC
3R	6322658	3R_6322658_SNP [dm3] 3R_10496936_SNP [dm6]	C	A	8.886e^-5	0.4	INTERGENIC
3L	8437848	3L_8437848_SNP [dm3] 3L_8444748_SNP [dm6]	C	T	8.906e^-5	0.4	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17645665	2L_17645665_SNP [dm3] 2L_17645665_SNP [dm6]	C	A	8.963e^-5	0.4	UPSTREAM CR45699 INTERGENIC
2L	7188762	2L_7188762_SNP [dm3] 2L_7188762_SNP [dm6]	A	T	8.982e^-5	0.4	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18490004	2R_18490004_SNP [dm3] 2R_22602499_SNP [dm6]	C	A	8.996e^-5	0.4	NON_SYNONYMOUS_CODING CG4294
3L	4084627	3L_4084627_SNP [dm3] 3L_4084627_SNP [dm6]	A	C	9.027e^-5	0.4	INTRON Gad1
3L	5339691	3L_5339691_DEL [dm3] 3L_5346591_DEL [dm6]	TATACA	T	9.029e^-5	0.4	INTRON lama
2L	19435246	2L_19435246_SNP [dm3] 2L_19435246_SNP [dm6]	G	A	9.074e^-5	0.4	SYNONYMOUS_CODING Rab9 DOWNSTREAM CG10237	TF binding site mE1_TFBS_cad
3R	25641904	3R_25641904_SNP [dm3] 3R_29816182_SNP [dm6]	C	A	9.075e^-5	0.4	NON_SYNONYMOUS_CODING Vps16B DOWNSTREAM CG7829	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15613207	3R_15613207_SNP [dm3] 3R_19787485_SNP [dm6]	C	T	9.092e^-5	0.4	INTERGENIC
2R	13366881	2R_13366881_SNP [dm3] 2R_17479376_SNP [dm6]	G	C	9.103e^-5	0.4	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8812832	X_8812832_SNP [dm3] X_8918799_SNP [dm6]	G	T	9.135e^-5	0.4	DOWNSTREAM CR44111 INTRON rdgA
2L	10306837	2L_10306837_SNP [dm3] 2L_10306837_SNP [dm6]	G	A	9.211e^-5	0.401	UPSTREAM CG4968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20391580	X_20391580_SNP [dm3] X_20520553_SNP [dm6]	A	G	9.223e^-5	0.401	INTRON Tak1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8909559	2R_8909559_INS [dm3] 2R_13022054_INS [dm6]	C	CGA	9.249e^-5	0.401	INTERGENIC
2R	8909561	2R_8909561_SNP [dm3] 2R_13022056_SNP [dm6]	C	T	9.249e^-5	0.401	INTERGENIC
2R	8515013	2R_8515013_INS [dm3] 2R_12627508_INS [dm6]	G	GTG	9.253e^-5	0.401	INTRON CG17760
2L	16873936	2L_16873936_SNP [dm3] 2L_16873936_SNP [dm6]	A	G	9.340e^-5	0.404	INTRON CR31781
3L	9694650	3L_9694650_SNP [dm3] 3L_9701550_SNP [dm6]	G	A	9.415e^-5	0.406	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad
3L	528874	3L_528874_SNP [dm3] 3L_528874_SNP [dm6]	T	C	9.569e^-5	0.409	SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45117 INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13688457	2L_13688457_DEL [dm3] 2L_13688457_DEL [dm6]	TGT	T	9.575e^-5	0.409	INTRON CG31814
3L	14221033	3L_14221033_SNP [dm3] 3L_14227933_SNP [dm6]	C	G	9.589e^-5	0.409	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16391981	2L_16391981_SNP [dm3] 2L_16391981_SNP [dm6]	G	A	9.590e^-5	0.409	INTERGENIC
3L	9821399	3L_9821399_SNP [dm3] 3L_9828299_SNP [dm6]	G	A	9.602e^-5	0.409	INTRON CG43897
2L	19333003	2L_19333003_SNP [dm3] 2L_19333003_SNP [dm6]	T	C	9.679e^-5	0.412	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	5851637	2R_5851637_SNP [dm3] 2R_9964132_SNP [dm6]	C	T	9.707e^-5	0.412	SYNONYMOUS_CODING CG1418 DOWNSTREAM Pal1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16547627	3L_16547627_SNP [dm3] 3L_16554527_SNP [dm6]	C	G	9.770e^-5	0.414	INTERGENIC
3L	528913	3L_528913_SNP [dm3] 3L_528913_SNP [dm6]	C	A	9.821e^-5	0.415	SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45117 INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24573726	3R_24573726_SNP [dm3] 3R_28748004_SNP [dm6]	A	G	9.840e^-5	0.415	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4084128	3L_4084128_SNP [dm3] 3L_4084128_SNP [dm6]	A	G	9.934e^-5	0.416	INTRON Gad1
2R	11703023	2R_11703023_SNP [dm3] 2R_15815518_SNP [dm6]	G	T	9.950e^-5	0.416	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2545888	3L_2545888_SNP [dm3] 3L_2545888_SNP [dm6]	A	G	9.969e^-5	0.416	INTRON Spn
3R	21427687	3R_21427687_SNP [dm3] 3R_25601965_SNP [dm6]	G	A	9.971e^-5	0.416	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
3L	9615482	3L_9615482_SNP [dm3] 3L_9622382_SNP [dm6]	T	A	9.974e^-5	0.416	INTRON LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17388051	3R_17388051_SNP [dm3] 3R_21562329_SNP [dm6]	T	C	1.009e^-4	0.42	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18234801	2L_18234801_DEL [dm3] 2L_18234801_DEL [dm6]	CCAACAACAGCAGTAG...	C	1.014e^-4	0.42	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	11185613	X_11185613_SNP [dm3] X_11291580_SNP [dm6]	G	C	1.015e^-4	0.42	INTRON CG44422
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	1.023e^-4	0.421	INTRON norpA
2L	15775586	2L_15775586_SNP [dm3] 2L_15775586_SNP [dm6]	C	A	1.024e^-4	0.421	DOWNSTREAM CG43760 INTERGENIC
3R	5688359	3R_5688359_SNP [dm3] 3R_9862637_SNP [dm6]	T	A	1.025e^-4	0.421	INTRON Teh1
2L	4019356	2L_4019356_SNP [dm3] 2L_4019356_SNP [dm6]	C	A	1.026e^-4	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14478673	3L_14478673_DEL [dm3] 3L_14485573_DEL [dm6]	AAGCTTCCACAA...	A	1.027e^-4	0.421	INTRON bbg
3R	25365535	3R_25365535_SNP [dm3] 3R_29539813_SNP [dm6]	A	G	1.031e^-4	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7453413	3L_7453413_SNP [dm3] 3L_7460313_SNP [dm6]	T	C	1.031e^-4	0.421	INTERGENIC
2L	4454897	2L_4454897_SNP [dm3] 2L_4454897_SNP [dm6]	G	A	1.052e^-4	0.427	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25225968	3R_25225968_SNP [dm3] 3R_29400246_SNP [dm6]	C	T	1.056e^-4	0.427	INTRON Ptp99A
X	8884620	X_8884620_SNP [dm3] X_8990587_SNP [dm6]	C	A	1.059e^-4	0.427	INTRON rdgA & 1 other
X	9640892	X_9640892_SNP [dm3] X_9746859_SNP [dm6]	A	C	1.062e^-4	0.427	INTRON Sp1	TF binding site BDTNP1_TFBS_dl
2L	14926630	2L_14926630_SNP [dm3] 2L_14926630_SNP [dm6]	A	T	1.063e^-4	0.427	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	25025508	3R_25025508_SNP [dm3] 3R_29199786_SNP [dm6]	G	A	1.068e^-4	0.427	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9740748	2L_9740748_SNP [dm3] 2L_9740748_SNP [dm6]	T	C	1.068e^-4	0.427	INTRON Nckx30C
2L	13171337	2L_13171337_SNP [dm3] 2L_13171337_SNP [dm6]	A	G	1.071e^-4	0.427	SYNONYMOUS_CODING Sfmbt INTRON Sfmbt
2R	18490195	2R_18490195_SNP [dm3] 2R_22602690_SNP [dm6]	A	G	1.080e^-4	0.427	INTRON CG4294
3R	26705672	3R_26705672_SNP [dm3] 3R_30879950_SNP [dm6]	A	T	1.080e^-4	0.427	INTRON CG12071	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7087239	3L_7087239_SNP [dm3] 3L_7094139_SNP [dm6]	C	A	1.083e^-4	0.427	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12260418	3L_12260418_SNP [dm3] 3L_12267318_SNP [dm6]	G	T	1.083e^-4	0.427	UPSTREAM CG32100 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	1172759	3R_1172759_SNP [dm3] 3R_5347037_SNP [dm6]	G	A	1.085e^-4	0.427	INTRON mtd
2R	15133935	2R_15133935_SNP [dm3] 2R_19246430_SNP [dm6]	T	G	1.086e^-4	0.427	INTERGENIC
2L	11579744	2L_11579744_SNP [dm3] 2L_11579744_SNP [dm6]	A	T	1.087e^-4	0.427	INTERGENIC
2R	7471135	2R_7471135_SNP [dm3] 2R_11583630_SNP [dm6]	C	T	1.097e^-4	0.427	SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1071531	3L_1071531_SNP [dm3] 3L_1071531_SNP [dm6]	A	C	1.104e^-4	0.427	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2R	16424601	2R_16424601_SNP [dm3] 2R_20537096_SNP [dm6]	T	G	1.105e^-4	0.427	NON_SYNONYMOUS_CODING CG13423
2R	9529611	2R_9529611_SNP [dm3] 2R_13642106_SNP [dm6]	C	T	1.105e^-4	0.427	INTRON fas
3R	15146540	3R_15146540_SNP [dm3] 3R_19320818_SNP [dm6]	A	T	1.109e^-4	0.427	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	4137507	3L_4137507_SNP [dm3] 3L_4137507_SNP [dm6]	A	G	1.110e^-4	0.427	SYNONYMOUS_CODING Rop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9615500	3L_9615500_SNP [dm3] 3L_9622400_SNP [dm6]	T	G	1.113e^-4	0.427	INTRON LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13241367	3L_13241367_SNP [dm3] 3L_13248267_SNP [dm6]	C	T	1.115e^-4	0.427	SYNONYMOUS_CODING CG32119 INTRON caps
2L	5961899	2L_5961899_DEL [dm3] 2L_5961899_DEL [dm6]	CC	C	1.121e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5885676	3R_5885676_SNP [dm3] 3R_10059954_SNP [dm6]	G	C	1.123e^-4	0.427	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
X	8884623	X_8884623_SNP [dm3] X_8990590_SNP [dm6]	C	A	1.123e^-4	0.427	INTRON rdgA & 1 other
3L	9676340	3L_9676340_SNP [dm3] 3L_9683240_SNP [dm6]	T	C	1.125e^-4	0.427	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad
3R	3552803	3R_3552803_SNP [dm3] 3R_7727081_SNP [dm6]	G	T	1.129e^-4	0.427	INTERGENIC
3L	15901589	3L_15901589_SNP [dm3] 3L_15908489_SNP [dm6]	A	C	1.130e^-4	0.427	INTRON sff
3R	14369173	3R_14369173_SNP [dm3] 3R_18543451_SNP [dm6]	A	G	1.132e^-4	0.427	INTRON fru
2L	4010981	2L_4010981_DEL [dm3] 2L_4010981_DEL [dm6]	CAC	A	1.133e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18835166	3L_18835166_SNP [dm3] 3L_18842066_SNP [dm6]	A	C	1.136e^-4	0.427	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19332986	2L_19332986_SNP [dm3] 2L_19332986_SNP [dm6]	T	C	1.136e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14478222	3L_14478222_SNP [dm3] 3L_14485122_SNP [dm6]	T	C	1.136e^-4	0.427	INTRON bbg
2L	3637887	2L_3637887_SNP [dm3] 2L_3637887_SNP [dm6]	A	G	1.136e^-4	0.427	UPSTREAM mir-4972 INTRON for
3L	3735564	3L_3735564_SNP [dm3] 3L_3735564_SNP [dm6]	G	A	1.137e^-4	0.427	INTRON CG32264
3L	11008881	3L_11008881_SNP [dm3] 3L_11015781_SNP [dm6]	C	G	1.139e^-4	0.427	INTERGENIC
2L	18913241	2L_18913241_SNP [dm3] 2L_18913241_SNP [dm6]	G	A	1.144e^-4	0.427	INTERGENIC
3R	26853389	3R_26853389_DEL [dm3] 3R_31027667_DEL [dm6]	TGATGCCT	T	1.145e^-4	0.427	INTERGENIC
3R	16374084	3R_16374084_SNP [dm3] 3R_20548362_SNP [dm6]	T	C	1.146e^-4	0.427	INTRON Stat92E	TF binding site mE1_TFBS_cad
2R	9629096	2R_9629096_SNP [dm3] 2R_13741591_SNP [dm6]	G	A	1.147e^-4	0.427	INTRON fas
2L	4011004	2L_4011004_DEL [dm3] 2L_4011004_DEL [dm6]	AA	A	1.148e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4122146	2L_4122146_SNP [dm3] 2L_4122146_SNP [dm6]	T	A	1.155e^-4	0.427	SYNONYMOUS_CODING Sr-CI DOWNSTREAM Sr-CIII
2L	15330368	2L_15330368_SNP [dm3] 2L_15330368_SNP [dm6]	C	A	1.160e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10771075	3L_10771075_SNP [dm3] 3L_10777975_SNP [dm6]	G	A	1.161e^-4	0.427	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	6288700	2L_6288700_SNP [dm3] 2L_6288700_SNP [dm6]	C	T	1.163e^-4	0.427	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
3L	19411763	3L_19411763_SNP [dm3] 3L_19418663_SNP [dm6]	T	A	1.166e^-4	0.427	INTERGENIC
3R	14804892	3R_14804892_SNP [dm3] 3R_18979170_SNP [dm6]	T	A	1.168e^-4	0.427	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
3R	14804893	3R_14804893_SNP [dm3] 3R_18979171_SNP [dm6]	A	C	1.168e^-4	0.427	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
2R	18902499	2R_18902499_SNP [dm3] 2R_23014976_SNP [dm6]	C	A	1.171e^-4	0.427	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
3L	9617990	3L_9617990_SNP [dm3] 3L_9624890_SNP [dm6]	A	G	1.176e^-4	0.427	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25317051	3R_25317051_SNP [dm3] 3R_29491329_SNP [dm6]	A	G	1.177e^-4	0.427	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19334422	2R_19334422_SNP [dm3] 2R_23446899_SNP [dm6]	C	A	1.178e^-4	0.427	INTRON CG43795
2L	20553425	2L_20553425_INS [dm3] 2L_20553425_INS [dm6]	A	AA	1.181e^-4	0.427	INTERGENIC
2R	8297645	2R_8297645_SNP [dm3] 2R_12410140_SNP [dm6]	A	T	1.183e^-4	0.427	UPSTREAM CG33627 DOWNSTREAM CG30050 INTRON CG33626
X	8758002	X_8758002_SNP [dm3] X_8863969_SNP [dm6]	T	C	1.183e^-4	0.427	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1071260	3L_1071260_DEL [dm3] 3L_1071260_DEL [dm6]	CTTCGCTCTGC...	C	1.184e^-4	0.427	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2R	8297638	2R_8297638_SNP [dm3] 2R_12410133_SNP [dm6]	C	T	1.184e^-4	0.427	UPSTREAM CG33627 DOWNSTREAM CG30050 INTRON CG33626
X	20848771	X_20848771_SNP [dm3] X_20977744_SNP [dm6]	A	G	1.185e^-4	0.427	UPSTREAM CG44426 INTERGENIC
2L	9731135	2L_9731135_SNP [dm3] 2L_9731135_SNP [dm6]	A	T	1.185e^-4	0.427	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	17936558	3L_17936558_SNP [dm3] 3L_17943458_SNP [dm6]	A	G	1.186e^-4	0.427	INTRON CG43174
3R	8442893	3R_8442893_SNP [dm3] 3R_12617171_SNP [dm6]	T	C	1.202e^-4	0.427	INTERGENIC
3R	1789666	3R_1789666_SNP [dm3] 3R_5963944_SNP [dm6]	G	C	1.203e^-4	0.427	INTERGENIC
3L	4918146	3L_4918146_INS [dm3] 3L_4918146_INS [dm6]	A	ACCGTAC	1.204e^-4	0.427	INTRON Rh50
2L	15775584	2L_15775584_SNP [dm3] 2L_15775584_SNP [dm6]	A	T	1.204e^-4	0.427	DOWNSTREAM CG43760 INTERGENIC
3L	12843041	3L_12843041_SNP [dm3] 3L_12849941_SNP [dm6]	T	A	1.213e^-4	0.427	UPSTREAM Wbp2 & 1 other INTRON CG10948	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15533428	2L_15533428_SNP [dm3] 2L_15533428_SNP [dm6]	T	G	1.218e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5872541	2L_5872541_SNP [dm3] 2L_5872541_SNP [dm6]	C	G	1.218e^-4	0.427	INTRON rau	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24824677	3R_24824677_SNP [dm3] 3R_28998955_SNP [dm6]	C	A	1.220e^-4	0.427	INTRON wat
3L	15452539	3L_15452539_SNP [dm3] 3L_15459439_SNP [dm6]	A	G	1.220e^-4	0.427	INTERGENIC
3L	8437704	3L_8437704_DEL [dm3] 3L_8444604_DEL [dm6]	TATAAAT	T	1.228e^-4	0.427	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8437716	3L_8437716_SNP [dm3] 3L_8444616_SNP [dm6]	A	T	1.228e^-4	0.427	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1632743	3L_1632743_SNP [dm3] 3L_1632743_SNP [dm6]	C	T	1.235e^-4	0.427	INTRON nSyb
3L	4917873	3L_4917873_SNP [dm3] 3L_4917873_SNP [dm6]	G	A	1.235e^-4	0.427	INTRON Rh50	TF binding site mE1_TFBS_chinmo
X	8171253	X_8171253_SNP [dm3] X_8277220_SNP [dm6]	G	T	1.237e^-4	0.427	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636
3R	26808495	3R_26808495_SNP [dm3] 3R_30982773_SNP [dm6]	G	C	1.239e^-4	0.427	INTRON 5-HT7
3L	13141572	3L_13141572_SNP [dm3] 3L_13148472_SNP [dm6]	A	T	1.240e^-4	0.427	INTERGENIC
3R	15148558	3R_15148558_SNP [dm3] 3R_19322836_SNP [dm6]	A	T	1.241e^-4	0.427	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12843021	3L_12843021_SNP [dm3] 3L_12849921_SNP [dm6]	C	T	1.242e^-4	0.427	UPSTREAM Wbp2 & 1 other INTRON CG10948	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15133782	2R_15133782_SNP [dm3] 2R_19246277_SNP [dm6]	C	A	1.242e^-4	0.427	INTERGENIC
2R	14739312	2R_14739312_SNP [dm3] 2R_18851807_SNP [dm6]	C	G	1.245e^-4	0.427	NON_SYNONYMOUS_CODING CG15084 DOWNSTREAM CG18190	TF binding site mE1_TFBS_chinmo
2R	9582958	2R_9582958_SNP [dm3] 2R_13695453_SNP [dm6]	A	T	1.248e^-4	0.427	INTRON fas
3R	26035734	3R_26035734_SNP [dm3] 3R_30210012_SNP [dm6]	C	G	1.250e^-4	0.427	NON_SYNONYMOUS_CODING Anp UPSTREAM RpS7 & 1 other
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	1.251e^-4	0.427	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14575289	2R_14575289_SNP [dm3] 2R_18687784_SNP [dm6]	G	A	1.251e^-4	0.427	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18842475	3L_18842475_SNP [dm3] 3L_18849375_SNP [dm6]	T	A	1.251e^-4	0.427	INTERGENIC
3L	16547640	3L_16547640_SNP [dm3] 3L_16554540_SNP [dm6]	G	C	1.253e^-4	0.427	INTERGENIC
2L	10709094	2L_10709094_SNP [dm3] 2L_10709094_SNP [dm6]	G	C	1.254e^-4	0.427	UTR_5_PRIME Lip2
2L	16435527	2L_16435527_SNP [dm3] 2L_16435527_SNP [dm6]	A	T	1.254e^-4	0.427	INTRON CG5888
3R	25659223	3R_25659223_SNP [dm3] 3R_29833501_SNP [dm6]	C	T	1.254e^-4	0.427	UPSTREAM Atg16 INTRON Atg16
3R	25659302	3R_25659302_SNP [dm3] 3R_29833580_SNP [dm6]	A	T	1.254e^-4	0.427	UPSTREAM Atg16 INTRON Atg16
3L	15088901	3L_15088901_SNP [dm3] 3L_15095801_SNP [dm6]	C	T	1.260e^-4	0.428	SYNONYMOUS_CODING Aats-gly	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14348130	3L_14348130_SNP [dm3] 3L_14355030_SNP [dm6]	C	A	1.263e^-4	0.428	INTRON fz	TF binding site BDTNP1_TFBS_twi
3L	4399794	3L_4399794_SNP [dm3] 3L_4399794_SNP [dm6]	A	G	1.270e^-4	0.429	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	16547621	3L_16547621_INS [dm3] 3L_16554521_INS [dm6]	T	TAAAT	1.270e^-4	0.429	INTERGENIC
2R	7474921	2R_7474921_SNP [dm3] 2R_11587416_SNP [dm6]	T	A	1.271e^-4	0.429	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	16293323	2R_16293323_SNP [dm3] 2R_20405818_SNP [dm6]	A	G	1.274e^-4	0.429	INTERGENIC
X	14660025	X_14660025_SNP [dm3] X_14765992_SNP [dm6]	A	T	1.280e^-4	0.43	UPSTREAM CG15890 INTERGENIC
3L	11214218	3L_11214218_DEL [dm3] 3L_11221118_DEL [dm6]	ATA	A	1.285e^-4	0.431	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	19178550	2R_19178550_SNP [dm3] 2R_23291027_SNP [dm6]	T	C	1.286e^-4	0.431	EXON CR44783
2L	9706530	2L_9706530_SNP [dm3] 2L_9706530_SNP [dm6]	G	A	1.291e^-4	0.432	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3R	26319151	3R_26319151_SNP [dm3] 3R_30493429_SNP [dm6]	A	G	1.294e^-4	0.432	INTRON PH4alphaMP	TF binding site mE1_TFBS_cad
3R	10138040	3R_10138040_SNP [dm3] 3R_14312318_SNP [dm6]	A	G	1.299e^-4	0.433	SYNONYMOUS_CODING CG31321
2R	14685218	2R_14685218_SNP [dm3] 2R_18797713_SNP [dm6]	C	A	1.303e^-4	0.433	SPLICE_SITE_REGION l_2_08717 INTRON l_2_08717	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9980894	2L_9980894_SNP [dm3] 2L_9980894_SNP [dm6]	G	T	1.305e^-4	0.433	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	19374708	2L_19374708_SNP [dm3] 2L_19374708_SNP [dm6]	G	A	1.307e^-4	0.433	INTERGENIC
2R	9545677	2R_9545677_SNP [dm3] 2R_13658172_SNP [dm6]	T	C	1.308e^-4	0.433	INTRON fas
2L	5036203	2L_5036203_SNP [dm3] 2L_5036203_SNP [dm6]	C	G	1.313e^-4	0.434	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7450279	3L_7450279_SNP [dm3] 3L_7457179_SNP [dm6]	G	C	1.321e^-4	0.435	SYNONYMOUS_CODING ppk26
3R	24985599	3R_24985599_SNP [dm3] 3R_29159877_SNP [dm6]	G	C	1.322e^-4	0.435	INTRON CG11897	TF binding site BDTNP1_TFBS_twi
3L	11219580	3L_11219580_SNP [dm3] 3L_11226480_SNP [dm6]	T	C	1.324e^-4	0.435	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
2L	8313400	2L_8313400_SNP [dm3] 2L_8313400_SNP [dm6]	A	G	1.328e^-4	0.435	SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13261667	2L_13261667_SNP [dm3] 2L_13261667_SNP [dm6]	T	G	1.331e^-4	0.436	UTR_5_PRIME CG44085 INTRON CG44085
2R	15282577	2R_15282577_SNP [dm3] 2R_19395072_SNP [dm6]	G	A	1.337e^-4	0.437	INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8109948	X_8109948_SNP [dm3] X_8215915_SNP [dm6]	C	G	1.343e^-4	0.437	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14327299	3R_14327299_SNP [dm3] 3R_18501577_SNP [dm6]	A	T	1.349e^-4	0.437	INTRON fru	TF binding site BDTNP1_TFBS_da
3R	10775844	3R_10775844_SNP [dm3] 3R_14950122_SNP [dm6]	G	A	1.355e^-4	0.437	INTERGENIC
2R	15468272	2R_15468272_SNP [dm3] 2R_19580767_SNP [dm6]	C	A	1.355e^-4	0.437	INTRON sm
3L	4918145	3L_4918145_SNP [dm3] 3L_4918145_SNP [dm6]	A	T	1.357e^-4	0.437	INTRON Rh50
3L	7452716	3L_7452716_SNP [dm3] 3L_7459616_SNP [dm6]	T	A	1.357e^-4	0.437	INTERGENIC
2L	10392867	2L_10392867_SNP [dm3] 2L_10392867_SNP [dm6]	A	G	1.362e^-4	0.437	UTR_3_PRIME da DOWNSTREAM da & 1 other
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	1.366e^-4	0.437	INTRON nwk
3R	9938282	3R_9938282_SNP [dm3] 3R_14112560_SNP [dm6]	G	A	1.370e^-4	0.437	UTR_3_PRIME Kif19A UPSTREAM CG14357	TF binding site mE1_TFBS_cad
3R	13768342	3R_13768342_SNP [dm3] 3R_17942620_SNP [dm6]	C	A	1.371e^-4	0.437	INTRON cpo	TF binding site mE1_TFBS_Trl
3R	24876852	3R_24876852_SNP [dm3] 3R_29051130_SNP [dm6]	T	C	1.372e^-4	0.437	SYNONYMOUS_CODING CG11841 DOWNSTREAM CG11837	TF binding site mE1_TFBS_cad
2R	8297644	2R_8297644_SNP [dm3] 2R_12410139_SNP [dm6]	T	C	1.379e^-4	0.437	UPSTREAM CG33627 DOWNSTREAM CG30050 INTRON CG33626
3R	7939681	3R_7939681_SNP [dm3] 3R_12113959_SNP [dm6]	T	G	1.379e^-4	0.437	INTERGENIC
3R	16195128	3R_16195128_SNP [dm3] 3R_20369406_SNP [dm6]	G	A	1.383e^-4	0.437	INTERGENIC
3L	2183985	3L_2183985_DEL [dm3] 3L_2183985_DEL [dm6]	AAGCTTATGATATTA...	A	1.388e^-4	0.437	INTERGENIC
3L	2184101	3L_2184101_SNP [dm3] 3L_2184101_SNP [dm6]	A	G	1.388e^-4	0.437	INTERGENIC
2L	19377123	2L_19377123_SNP [dm3] 2L_19377123_SNP [dm6]	T	C	1.392e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4388011	3L_4388011_SNP [dm3] 3L_4388011_SNP [dm6]	C	T	1.393e^-4	0.437	INTRON slow
X	8812868	X_8812868_SNP [dm3] X_8918835_SNP [dm6]	C	T	1.397e^-4	0.437	DOWNSTREAM CR44111 INTRON rdgA
3R	25659980	3R_25659980_SNP [dm3] 3R_29834258_SNP [dm6]	A	C	1.400e^-4	0.437	UPSTREAM Atg16 INTRON Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5445766	3L_5445766_SNP [dm3] 3L_5452666_SNP [dm6]	A	G	1.400e^-4	0.437	INTERGENIC
3L	9614793	3L_9614793_SNP [dm3] 3L_9621693_SNP [dm6]	A	G	1.400e^-4	0.437	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1797675	3R_1797675_SNP [dm3] 3R_5971953_SNP [dm6]	G	C	1.401e^-4	0.437	DOWNSTREAM Obp83a INTERGENIC
X	3645835	X_3645835_SNP [dm3] X_3751802_SNP [dm6]	G	A	1.402e^-4	0.437	INTRON tlk
3R	26809308	3R_26809308_SNP [dm3] 3R_30983586_SNP [dm6]	T	C	1.404e^-4	0.437	INTRON 5-HT7
3R	15613453	3R_15613453_SNP [dm3] 3R_19787731_SNP [dm6]	A	G	1.408e^-4	0.437	INTERGENIC
3R	16341581	3R_16341581_SNP [dm3] 3R_20515859_SNP [dm6]	G	A	1.408e^-4	0.437	INTERGENIC
2R	10593338	2R_10593338_SNP [dm3] 2R_14705833_SNP [dm6]	A	T	1.411e^-4	0.437	INTRON mspo
3R	26073788	3R_26073788_SNP [dm3] 3R_30248066_SNP [dm6]	C	T	1.413e^-4	0.437	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	7471777	2R_7471777_SNP [dm3] 2R_11584272_SNP [dm6]	T	C	1.413e^-4	0.437	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5237565	3R_5237565_SNP [dm3] 3R_9411843_SNP [dm6]	A	C	1.415e^-4	0.437	UPSTREAM alpha-Man-II INTRON Task7	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	1.423e^-4	0.437	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3L	15932387	3L_15932387_SNP [dm3] 3L_15939287_SNP [dm6]	C	T	1.424e^-4	0.437	INTRON Pka-C3
2R	17066788	2R_17066788_SNP [dm3] 2R_21179283_SNP [dm6]	C	T	1.427e^-4	0.437	UTR_5_PRIME Pu UPSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25660015	3R_25660015_SNP [dm3] 3R_29834293_SNP [dm6]	C	T	1.431e^-4	0.437	UPSTREAM Atg16 INTRON Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8909552	2R_8909552_SNP [dm3] 2R_13022047_SNP [dm6]	G	A	1.432e^-4	0.437	INTERGENIC
2L	19419021	2L_19419021_SNP [dm3] 2L_19419021_SNP [dm6]	A	G	1.433e^-4	0.437	UTR_3_PRIME lectin-37Da UPSTREAM lectin-37Db DOWNSTREAM Lectin-galC1 & 1 other INTRON Pax
X	8884618	X_8884618_SNP [dm3] X_8990585_SNP [dm6]	C	T	1.437e^-4	0.437	INTRON rdgA & 1 other
3R	23627529	3R_23627529_SNP [dm3] 3R_27801807_SNP [dm6]	A	C	1.438e^-4	0.437	INTRON CG34353
3L	1856053	3L_1856053_INS [dm3] 3L_1856053_INS [dm6]	A	ACTAAATAATGGTTGGGCA...	1.439e^-4	0.437	UPSTREAM CG13936 INTERGENIC
3R	23572869	3R_23572869_SNP [dm3] 3R_27747147_SNP [dm6]	T	C	1.447e^-4	0.437	UTR_3_PRIME Ets98B	TF binding site mE1_TFBS_chinmo
3L	11808190	3L_11808190_SNP [dm3] 3L_11815090_SNP [dm6]	T	C	1.448e^-4	0.437	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5238453	2R_5238453_SNP [dm3] 2R_9350948_SNP [dm6]	G	A	1.448e^-4	0.437	UTR_5_PRIME CG13739 INTRON CG13954
3R	25317057	3R_25317057_SNP [dm3] 3R_29491335_SNP [dm6]	T	C	1.452e^-4	0.437	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8008254	X_8008254_SNP [dm3] X_8114221_SNP [dm6]	A	T	1.459e^-4	0.437	INTRON Gclc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	17388522	3R_17388522_SNP [dm3] 3R_21562800_SNP [dm6]	G	A	1.461e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_inv
3L	13264634	3L_13264634_SNP [dm3] 3L_13271534_SNP [dm6]	A	C	1.462e^-4	0.437	INTRON caps
X	8812844	X_8812844_SNP [dm3] X_8918811_SNP [dm6]	A	T	1.463e^-4	0.437	DOWNSTREAM CR44111 INTRON rdgA
X	20845122	X_20845122_SNP [dm3] X_20974095_SNP [dm6]	T	A	1.465e^-4	0.437	INTERGENIC
X	16083294	X_16083294_DEL [dm3] X_16189261_DEL [dm6]	CATTTAA	AGG	1.471e^-4	0.437	INTERGENIC
2R	19309876	2R_19309876_INS [dm3] 2R_23422353_INS [dm6]	T	TG	1.475e^-4	0.437	INTRON CG9815
3R	13972448	3R_13972448_SNP [dm3] 3R_18146726_SNP [dm6]	C	G	1.475e^-4	0.437	INTERGENIC
3L	9619908	3L_9619908_SNP [dm3] 3L_9626808_SNP [dm6]	C	T	1.477e^-4	0.437	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
3L	12477207	3L_12477207_SNP [dm3] 3L_12484107_SNP [dm6]	C	T	1.478e^-4	0.437	INTRON CG10663 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	26668004	3R_26668004_SNP [dm3] 3R_30842282_SNP [dm6]	C	T	1.479e^-4	0.437	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15914183	3L_15914183_INS [dm3] 3L_15921083_INS [dm6]	G	GATTGCCAATGGACATTTGT...	1.480e^-4	0.437	INTRON sff	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	13528930	X_13528930_SNP [dm3] X_13634897_SNP [dm6]	A	G	1.482e^-4	0.437	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10196179	2L_10196179_SNP [dm3] 2L_10196179_SNP [dm6]	A	C	1.482e^-4	0.437	INTRON Sur
3R	21285892	3R_21285892_SNP [dm3] 3R_25460170_SNP [dm6]	T	C	1.486e^-4	0.437	INTRON Fur1
3L	10449139	3L_10449139_SNP [dm3] 3L_10456039_SNP [dm6]	A	G	1.486e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16564015	3R_16564015_SNP [dm3] 3R_20738293_SNP [dm6]	G	T	1.489e^-4	0.437	NON_SYNONYMOUS_CODING CG17267 UTR_3_PRIME cdc2c DOWNSTREAM cdc2c
2R	18506893	2R_18506893_SNP [dm3] 2R_22619388_SNP [dm6]	C	T	1.491e^-4	0.437	INTRON CG33143
3R	24909369	3R_24909369_SNP [dm3] 3R_29083647_SNP [dm6]	T	G	1.493e^-4	0.437	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20929773	3L_20929773_SNP [dm3] 3L_20936673_SNP [dm6]	C	T	1.495e^-4	0.437	SYNONYMOUS_CODING fng
2R	9477656	2R_9477656_SNP [dm3] 2R_13590151_SNP [dm6]	G	C	1.501e^-4	0.437	INTRON CG6191 & 1 other
2L	13171123	2L_13171123_SNP [dm3] 2L_13171123_SNP [dm6]	T	A	1.506e^-4	0.437	INTRON Sfmbt
2L	22617355	2L_22617355_SNP [dm3] 2L_22724623_SNP [dm6]	C	A	1.514e^-4	0.437	INTRON CG40006
3L	8138295	3L_8138295_SNP [dm3] 3L_8145195_SNP [dm6]	A	T	1.515e^-4	0.437	INTRON CG13676
X	12746663	X_12746663_SNP [dm3] X_12852630_SNP [dm6]	A	T	1.515e^-4	0.437	INTRON Pde9
2L	9653800	2L_9653800_SNP [dm3] 2L_9653800_SNP [dm6]	T	C	1.516e^-4	0.437	INTRON Apoltp
3R	23597671	3R_23597671_SNP [dm3] 3R_27771949_SNP [dm6]	A	C	1.517e^-4	0.437	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15146050	3R_15146050_SNP [dm3] 3R_19320328_SNP [dm6]	G	A	1.518e^-4	0.437	INTRON Dl	TF binding site BDTNP1_TFBS_twi
3L	15088937	3L_15088937_SNP [dm3] 3L_15095837_SNP [dm6]	C	T	1.519e^-4	0.437	SYNONYMOUS_CODING Aats-gly	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7479707	2R_7479707_SNP [dm3] 2R_11592202_SNP [dm6]	C	T	1.522e^-4	0.437	UPSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14369158	3R_14369158_INS [dm3] 3R_18543436_INS [dm6]	C	GCAAGG	1.522e^-4	0.437	INTRON fru
3L	13941037	3L_13941037_SNP [dm3] 3L_13947937_SNP [dm6]	G	T	1.525e^-4	0.437	INTRON CG32137
2R	14984092	2R_14984092_SNP [dm3] 2R_19096587_SNP [dm6]	G	A	1.527e^-4	0.437	UPSTREAM Ir56a INTRON 5-HT1A
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	1.528e^-4	0.437	INTRON nwk
X	11099814	X_11099814_DEL [dm3] X_11205781_DEL [dm6]	CT	C	1.528e^-4	0.437	INTERGENIC
3L	9615411	3L_9615411_SNP [dm3] 3L_9622311_SNP [dm6]	A	G	1.531e^-4	0.437	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4687685	3R_4687685_SNP [dm3] 3R_8861963_SNP [dm6]	T	G	1.534e^-4	0.437	UPSTREAM tRNA:R:85Cb DOWNSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26757526	3R_26757526_SNP [dm3] 3R_30931804_SNP [dm6]	A	T	1.535e^-4	0.437	INTERGENIC
2L	9354377	2L_9354377_SNP [dm3] 2L_9354377_SNP [dm6]	A	T	1.537e^-4	0.437	INTERGENIC
3R	4756862	3R_4756862_SNP [dm3] 3R_8931140_SNP [dm6]	A	G	1.540e^-4	0.437	SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2L	12919650	2L_12919650_SNP [dm3] 2L_12919650_SNP [dm6]	T	C	1.541e^-4	0.437	SYNONYMOUS_CODING ACXB
3L	1870418	3L_1870418_SNP [dm3] 3L_1870418_SNP [dm6]	A	G	1.542e^-4	0.437	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3645813	X_3645813_DEL [dm3] X_3751780_DEL [dm6]	GTACATACAT	G	1.542e^-4	0.437	INTRON tlk
3R	23235878	3R_23235878_SNP [dm3] 3R_27410156_SNP [dm6]	C	T	1.544e^-4	0.437	INTRON side
3L	5440665	3L_5440665_SNP [dm3] 3L_5447565_SNP [dm6]	G	A	1.548e^-4	0.438	INTERGENIC
X	7088900	X_7088900_DEL [dm3] X_7194867_DEL [dm6]	GG	G	1.552e^-4	0.438	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12866198	3L_12866198_SNP [dm3] 3L_12873098_SNP [dm6]	G	C	1.557e^-4	0.438	INTERGENIC
2R	12014158	2R_12014158_SNP [dm3] 2R_16126653_SNP [dm6]	C	A	1.558e^-4	0.438	INTRON spin
2R	7481319	2R_7481319_SNP [dm3] 2R_11593814_SNP [dm6]	T	G	1.559e^-4	0.438	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	14575306	2R_14575306_SNP [dm3] 2R_18687801_SNP [dm6]	G	T	1.564e^-4	0.438	UPSTREAM Sik3 INTRON CG42855	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8884641	X_8884641_SNP [dm3] X_8990608_SNP [dm6]	G	T	1.564e^-4	0.438	INTRON rdgA & 1 other
2L	21998984	2L_21998984_SNP [dm3] 2L_21998984_SNP [dm6]	A	G	1.565e^-4	0.438	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
3R	16995090	3R_16995090_SNP [dm3] 3R_21169368_SNP [dm6]	G	A	1.569e^-4	0.438	INTRON SNF4Agamma
X	10042112	X_10042112_SNP [dm3] X_10148079_SNP [dm6]	T	G	1.569e^-4	0.438	INTRON CR44894 & 1 other
X	12746677	X_12746677_SNP [dm3] X_12852644_SNP [dm6]	A	G	1.573e^-4	0.438	INTRON Pde9
2R	18894102	2R_18894102_SNP [dm3] 2R_23006579_SNP [dm6]	A	G	1.575e^-4	0.438	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	6209597	2R_6209597_SNP [dm3] 2R_10322092_SNP [dm6]	G	T	1.582e^-4	0.439	UTR_3_PRIME Ndg DOWNSTREAM CG42732 & 1 other
2R	14575305	2R_14575305_SNP [dm3] 2R_18687800_SNP [dm6]	T	C	1.583e^-4	0.439	UPSTREAM Sik3 INTRON CG42855	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6106918	3L_6106918_SNP [dm3] 3L_6113818_SNP [dm6]	A	C	1.584e^-4	0.439	INTRON Ets65A
3L	11557452	3L_11557452_SNP [dm3] 3L_11564352_SNP [dm6]	A	G	1.589e^-4	0.44	UPSTREAM CG33267 DOWNSTREAM CG7394 INTERGENIC
2R	9435715	2R_9435715_SNP [dm3] 2R_13548210_SNP [dm6]	C	T	1.595e^-4	0.44	UPSTREAM CG6145 DOWNSTREAM CG33156 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26167346	3R_26167346_SNP [dm3] 3R_30341624_SNP [dm6]	C	G	1.595e^-4	0.44	INTRON hdc
2R	11048165	2R_11048165_SNP [dm3] 2R_15160660_SNP [dm6]	A	G	1.602e^-4	0.44	INTRON igl
3L	10453066	3L_10453066_SNP [dm3] 3L_10459966_SNP [dm6]	A	G	1.604e^-4	0.44	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
X	4330885	X_4330885_SNP [dm3] X_4436852_SNP [dm6]	T	C	1.604e^-4	0.44	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10185518	2R_10185518_SNP [dm3] 2R_14298013_SNP [dm6]	G	A	1.605e^-4	0.44	SYNONYMOUS_CODING Ih
2L	8683906	2L_8683906_SNP [dm3] 2L_8683906_SNP [dm6]	C	G	1.606e^-4	0.44	UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other INTRON CG9289
3R	22640085	3R_22640085_SNP [dm3] 3R_26814363_SNP [dm6]	T	C	1.610e^-4	0.44	INTRON Tl
2L	7427677	2L_7427677_SNP [dm3] 2L_7427677_SNP [dm6]	C	G	1.619e^-4	0.442	UPSTREAM CG5261 INTRON CG5261	TF binding site BDTNP1_TFBS_dl
X	8812839	X_8812839_SNP [dm3] X_8918806_SNP [dm6]	G	T	1.625e^-4	0.442	DOWNSTREAM CR44111 INTRON rdgA
3L	1630271	3L_1630271_SNP [dm3] 3L_1630271_SNP [dm6]	G	A	1.628e^-4	0.442	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
3L	13453161	3L_13453161_SNP [dm3] 3L_13460061_SNP [dm6]	T	G	1.629e^-4	0.442	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5207654	3L_5207654_SNP [dm3] 3L_5214554_SNP [dm6]	A	C	1.632e^-4	0.442	INTRON shep
3L	1624167	3L_1624167_SNP [dm3] 3L_1624167_SNP [dm6]	T	G	1.638e^-4	0.442	NON_SYNONYMOUS_CODING GC DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16320544	2R_16320544_SNP [dm3] 2R_20433039_SNP [dm6]	A	G	1.639e^-4	0.442	INTRON CG12484
2L	8273767	2L_8273767_SNP [dm3] 2L_8273767_SNP [dm6]	T	C	1.643e^-4	0.442	UTR_5_PRIME Btk29A INTRON Btk29A
3R	25535521	3R_25535521_SNP [dm3] 3R_29709799_SNP [dm6]	C	T	1.644e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6753439	3L_6753439_SNP [dm3] 3L_6760339_SNP [dm6]	C	T	1.647e^-4	0.442	NON_SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9619790	3L_9619790_SNP [dm3] 3L_9626690_SNP [dm6]	T	G	1.650e^-4	0.442	SPLICE_SITE_REGION CG3335 DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
2R	14712670	2R_14712670_DEL [dm3] 2R_18825165_DEL [dm6]	GA	G	1.653e^-4	0.442	INTRON CG15097	TF binding site mE1_TFBS_chinmo
3L	10903863	3L_10903863_SNP [dm3] 3L_10910763_SNP [dm6]	T	A	1.654e^-4	0.442	INTERGENIC
3L	10118322	3L_10118322_SNP [dm3] 3L_10125222_SNP [dm6]	A	T	1.656e^-4	0.442	INTRON dpr6
3R	17996927	3R_17996927_INS [dm3] 3R_22171205_INS [dm6]	A	ACAT	1.656e^-4	0.442	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13193971	3L_13193971_SNP [dm3] 3L_13200871_SNP [dm6]	T	C	1.658e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	14575297	2R_14575297_SNP [dm3] 2R_18687792_SNP [dm6]	C	T	1.662e^-4	0.442	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10316228	3L_10316228_SNP [dm3] 3L_10323128_SNP [dm6]	C	T	1.666e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	21364908	X_21364908_SNP [dm3] X_21493881_SNP [dm6]	G	T	1.667e^-4	0.442	INTERGENIC
X	17015736	X_17015736_SNP [dm3] X_17121703_SNP [dm6]	T	A	1.670e^-4	0.442	INTRON CG5004
2L	12201559	2L_12201559_SNP [dm3] 2L_12201559_SNP [dm6]	A	G	1.673e^-4	0.442	UTR_5_PRIME aret INTRON aret
2L	9386747	2L_9386747_SNP [dm3] 2L_9386747_SNP [dm6]	C	T	1.674e^-4	0.442	UPSTREAM Aldh INTRON Shawl
2L	10460524	2L_10460524_SNP [dm3] 2L_10460524_SNP [dm6]	T	A	1.675e^-4	0.442	SPLICE_SITE_REGION LM408 INTRON LM408
3L	2331124	3L_2331124_SNP [dm3] 3L_2331124_SNP [dm6]	G	A	1.677e^-4	0.442	INTRON MsR1
2R	14718442	2R_14718442_SNP [dm3] 2R_18830937_SNP [dm6]	C	T	1.679e^-4	0.442	START_GAINED CG15082 UTR_5_PRIME CG15082 UPSTREAM CG15082
2R	9582960	2R_9582960_SNP [dm3] 2R_13695455_SNP [dm6]	C	T	1.680e^-4	0.442	INTRON fas
2R	5176460	2R_5176460_SNP [dm3] 2R_9288955_SNP [dm6]	A	C	1.688e^-4	0.442	UTR_3_PRIME CG1968 DOWNSTREAM Mad1
2L	5521641	2L_5521641_SNP [dm3] 2L_5521641_SNP [dm6]	G	A	1.695e^-4	0.442	SYNONYMOUS_CODING CG7371 DOWNSTREAM cl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15449360	3L_15449360_SNP [dm3] 3L_15456260_SNP [dm6]	G	A	1.696e^-4	0.442	INTERGENIC
2R	8297633	2R_8297633_DEL [dm3] 2R_12410128_DEL [dm6]	TAAT	T	1.703e^-4	0.442	UPSTREAM CG33627 DOWNSTREAM CG30050 INTRON CG33626
2R	9454356	2R_9454356_SNP [dm3] 2R_13566851_SNP [dm6]	T	A	1.705e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11067705	2L_11067705_SNP [dm3] 2L_11067705_SNP [dm6]	T	A	1.706e^-4	0.442	UPSTREAM Samuel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	11703015	2R_11703015_SNP [dm3] 2R_15815510_SNP [dm6]	T	A	1.706e^-4	0.442	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8812833	X_8812833_DEL [dm3] X_8918800_DEL [dm6]	CC	C	1.708e^-4	0.442	DOWNSTREAM CR44111 INTRON rdgA
X	8812840	X_8812840_SNP [dm3] X_8918807_SNP [dm6]	A	T	1.708e^-4	0.442	DOWNSTREAM CR44111 INTRON rdgA
2L	18906739	2L_18906739_SNP [dm3] 2L_18906739_SNP [dm6]	G	A	1.710e^-4	0.442	EXON CR44738
2R	7594798	2R_7594798_SNP [dm3] 2R_11707293_SNP [dm6]	G	T	1.715e^-4	0.442	INTERGENIC
3R	11338203	3R_11338203_SNP [dm3] 3R_15512481_SNP [dm6]	C	T	1.720e^-4	0.442	INTERGENIC
3L	19948541	3L_19948541_SNP [dm3] 3L_19955441_SNP [dm6]	T	G	1.720e^-4	0.442	UPSTREAM CG42654 INTRON Ac76E & 1 other
3R	15467999	3R_15467999_SNP [dm3] 3R_19642277_SNP [dm6]	G	A	1.722e^-4	0.442	SYNONYMOUS_CODING subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15793926	3R_15793926_SNP [dm3] 3R_19968204_SNP [dm6]	C	A	1.724e^-4	0.442	INTRON Hs6st
3L	13453151	3L_13453151_SNP [dm3] 3L_13460051_SNP [dm6]	G	A	1.725e^-4	0.442	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15043654	X_15043654_SNP [dm3] X_15149621_SNP [dm6]	G	A	1.728e^-4	0.442	INTRON CG9095
2L	3700584	2L_3700584_SNP [dm3] 2L_3700584_SNP [dm6]	C	A	1.729e^-4	0.442	UTR_3_PRIME CG42465 UPSTREAM Sfp24C1 & 1 other DOWNSTREAM CG42464
2R	4472973	2R_4472973_SNP [dm3] 2R_8585468_SNP [dm6]	A	T	1.734e^-4	0.442	UPSTREAM CG42326 INTERGENIC
X	8884645	X_8884645_SNP [dm3] X_8990612_SNP [dm6]	T	A	1.735e^-4	0.442	INTRON rdgA & 1 other
X	8884646	X_8884646_SNP [dm3] X_8990613_SNP [dm6]	G	A	1.735e^-4	0.442	INTRON rdgA & 1 other
X	2756433	X_2756433_SNP [dm3] X_2862400_SNP [dm6]	T	C	1.736e^-4	0.442	INTRON kirre
3R	15328855	3R_15328855_INS [dm3] 3R_19503133_INS [dm6]	A	AA	1.739e^-4	0.442	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3R	25584845	3R_25584845_SNP [dm3] 3R_29759123_SNP [dm6]	A	G	1.739e^-4	0.442	UPSTREAM CR44953 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15793827	3L_15793827_SNP [dm3] 3L_15800727_SNP [dm6]	T	A	1.740e^-4	0.442	INTERGENIC
2R	7474843	2R_7474843_SNP [dm3] 2R_11587338_SNP [dm6]	C	G	1.740e^-4	0.442	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	15775524	2L_15775524_SNP [dm3] 2L_15775524_SNP [dm6]	T	G	1.769e^-4	0.449	DOWNSTREAM CG43760 INTERGENIC
3R	16138862	3R_16138862_SNP [dm3] 3R_20313140_SNP [dm6]	T	C	1.771e^-4	0.449	INTRON CG42668
3L	3735622	3L_3735622_SNP [dm3] 3L_3735622_SNP [dm6]	C	A	1.778e^-4	0.449	INTRON CG32264
2R	20485562	2R_20485562_SNP [dm3] 2R_24598039_SNP [dm6]	T	C	1.779e^-4	0.449	SYNONYMOUS_CODING CG13587 DOWNSTREAM pio
3L	11196804	3L_11196804_SNP [dm3] 3L_11203704_SNP [dm6]	A	T	1.784e^-4	0.449	INTRON Plod
X	20857912	X_20857912_SNP [dm3] X_20986885_SNP [dm6]	C	G	1.788e^-4	0.449	INTERGENIC
3L	15960646	3L_15960646_SNP [dm3] 3L_15967546_SNP [dm6]	A	T	1.793e^-4	0.449	SYNONYMOUS_CODING l_3_72Ab UPSTREAM CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15096088	3R_15096088_SNP [dm3] 3R_19270366_SNP [dm6]	T	A	1.804e^-4	0.449	INTERGENIC
3L	9623419	3L_9623419_INS [dm3] 3L_9630319_INS [dm6]	C	CGAGATTGAGGCC...	1.804e^-4	0.449	INTRON CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19376999	2L_19376999_SNP [dm3] 2L_19376999_SNP [dm6]	C	G	1.806e^-4	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12652819	3L_12652819_SNP [dm3] 3L_12659719_SNP [dm6]	T	C	1.809e^-4	0.449	EXON CR44553
3L	10770819	3L_10770819_SNP [dm3] 3L_10777719_SNP [dm6]	T	A	1.810e^-4	0.449	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	14660024	X_14660024_SNP [dm3] X_14765991_SNP [dm6]	A	T	1.810e^-4	0.449	UPSTREAM CG15890 INTERGENIC
2L	4454894	2L_4454894_SNP [dm3] 2L_4454894_SNP [dm6]	C	T	1.811e^-4	0.449	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15452537	3L_15452537_SNP [dm3] 3L_15459437_SNP [dm6]	C	A	1.813e^-4	0.449	INTERGENIC
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	1.819e^-4	0.449	INTRON nwk
X	12163604	X_12163604_SNP [dm3] X_12269571_SNP [dm6]	C	T	1.819e^-4	0.449	INTRON Ten-a
3R	19566800	3R_19566800_SNP [dm3] 3R_23741078_SNP [dm6]	T	C	1.822e^-4	0.449	INTRON Hmgcr
3L	18842503	3L_18842503_DEL [dm3] 3L_18849403_DEL [dm6]	AA	A	1.824e^-4	0.449	INTERGENIC
3R	24903754	3R_24903754_SNP [dm3] 3R_29078032_SNP [dm6]	G	C	1.828e^-4	0.449	INTRON CG11873
3L	14430384	3L_14430384_INS [dm3] 3L_14437284_INS [dm6]	A	ATCAGAGCT	1.830e^-4	0.449	INTRON bbg
3R	17610576	3R_17610576_SNP [dm3] 3R_21784854_SNP [dm6]	C	T	1.831e^-4	0.449	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7736232	3R_7736232_SNP [dm3] 3R_11910510_SNP [dm6]	A	T	1.831e^-4	0.449	INTRON Cad87A	TF binding site mE1_TFBS_HSA
3L	7087036	3L_7087036_SNP [dm3] 3L_7093936_SNP [dm6]	T	A	1.834e^-4	0.449	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16511053	3L_16511053_SNP [dm3] 3L_16517953_SNP [dm6]	G	A	1.838e^-4	0.449	INTRON CG43373
3R	25575906	3R_25575906_SNP [dm3] 3R_29750184_SNP [dm6]	C	T	1.838e^-4	0.449	INTRON yata	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	963425	3R_963425_SNP [dm3] 3R_5137703_SNP [dm6]	A	T	1.840e^-4	0.449	UTR_5_PRIME CG12589 UPSTREAM CG12589	TF binding site mE1_TFBS_cad
X	3849140	X_3849140_SNP [dm3] X_3955107_SNP [dm6]	T	C	1.844e^-4	0.449	UTR_3_PRIME Vap-33A DOWNSTREAM lva
2R	11756975	2R_11756975_SNP [dm3] 2R_15869470_SNP [dm6]	A	T	1.844e^-4	0.449	UPSTREAM Rif1 DOWNSTREAM sli INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14335111	3R_14335111_SNP [dm3] 3R_18509389_SNP [dm6]	C	T	1.845e^-4	0.449	INTRON fru
X	3645833	X_3645833_SNP [dm3] X_3751800_SNP [dm6]	A	G	1.846e^-4	0.449	INTRON tlk
3L	5568486	3L_5568486_SNP [dm3] 3L_5575386_SNP [dm6]	A	T	1.850e^-4	0.449	UPSTREAM Msr-110 INTRON Msr-110
3R	16193686	3R_16193686_SNP [dm3] 3R_20367964_SNP [dm6]	C	T	1.852e^-4	0.449	INTERGENIC
X	17680526	X_17680526_SNP [dm3] X_17786493_SNP [dm6]	T	A	1.852e^-4	0.449	INTERGENIC
X	10899873	X_10899873_SNP [dm3] X_11005840_SNP [dm6]	A	T	1.853e^-4	0.449	INTRON CG42339
3R	25350542	3R_25350542_SNP [dm3] 3R_29524820_SNP [dm6]	C	T	1.857e^-4	0.449	INTERGENIC
3L	19418986	3L_19418986_SNP [dm3] 3L_19425886_SNP [dm6]	G	C	1.857e^-4	0.449	DOWNSTREAM CR42838 INTERGENIC
2L	18457686	2L_18457686_INS [dm3] 2L_18457686_INS [dm6]	T	TT	1.863e^-4	0.45	INTRON let-7-C
3R	20918634	3R_20918634_INS [dm3] 3R_25092912_INS [dm6]	G	GG	1.864e^-4	0.45	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1636008	3R_1636008_SNP [dm3] 3R_5810286_SNP [dm6]	C	T	1.876e^-4	0.451	UTR_3_PRIME CG11000
2R	10948694	2R_10948694_SNP [dm3] 2R_15061189_SNP [dm6]	T	C	1.878e^-4	0.451	INTERGENIC
3L	11196214	3L_11196214_SNP [dm3] 3L_11203114_SNP [dm6]	C	G	1.886e^-4	0.451	SYNONYMOUS_CODING Plod DOWNSTREAM CG14141
3L	9694662	3L_9694662_SNP [dm3] 3L_9701562_SNP [dm6]	A	G	1.887e^-4	0.451	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad
X	3066081	X_3066081_SNP [dm3] X_3172048_SNP [dm6]	G	A	1.887e^-4	0.451	UTR_3_PRIME N DOWNSTREAM CG18508 & 1 other
3L	21865641	3L_21865641_SNP [dm3] 3L_21872541_SNP [dm6]	C	T	1.888e^-4	0.451	INTRON mub
2L	19332963	2L_19332963_SNP [dm3] 2L_19332963_SNP [dm6]	T	A	1.888e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	14363871	3L_14363871_SNP [dm3] 3L_14370771_SNP [dm6]	G	A	1.890e^-4	0.451	INTERGENIC
2L	13410932	2L_13410932_SNP [dm3] 2L_13410932_SNP [dm6]	A	G	1.891e^-4	0.451	UTR_3_PRIME CG7110 DOWNSTREAM Vm34Ca
2R	6890468	2R_6890468_SNP [dm3] 2R_11002963_SNP [dm6]	G	T	1.895e^-4	0.451	INTRON luna
3R	26859590	3R_26859590_INS [dm3] 3R_31033868_INS [dm6]	G	GCCAG	1.896e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18204964	3L_18204964_SNP [dm3] 3L_18211864_SNP [dm6]	A	C	1.899e^-4	0.451	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	17936621	3L_17936621_INS [dm3] 3L_17943521_INS [dm6]	A	AAA	1.907e^-4	0.452	INTRON CG43174
3R	4062773	3R_4062773_SNP [dm3] 3R_8237051_SNP [dm6]	G	T	1.908e^-4	0.452	UTR_3_PRIME DNApol-iota & 1 other DOWNSTREAM Ada2b & 1 other
3L	13949520	3L_13949520_SNP [dm3] 3L_13956420_SNP [dm6]	C	G	1.911e^-4	0.452	INTRON CG32137
3R	24824726	3R_24824726_SNP [dm3] 3R_28999004_SNP [dm6]	C	G	1.916e^-4	0.452	INTRON wat
3R	22536361	3R_22536361_SNP [dm3] 3R_26710639_SNP [dm6]	T	C	1.919e^-4	0.452	INTRON amon
2R	17959535	2R_17959535_SNP [dm3] 2R_22072030_SNP [dm6]	G	A	1.920e^-4	0.452	SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25350561	3R_25350561_SNP [dm3] 3R_29524839_SNP [dm6]	C	T	1.921e^-4	0.452	INTERGENIC
X	5722826	X_5722826_SNP [dm3] X_5828793_SNP [dm6]	C	A	1.926e^-4	0.452	INTRON CG15765
3L	15913432	3L_15913432_SNP [dm3] 3L_15920332_SNP [dm6]	G	C	1.931e^-4	0.452	INTRON sff	TF binding site mE1_TFBS_inv
3L	10903836	3L_10903836_DEL [dm3] 3L_10910736_DEL [dm6]	AG	A	1.932e^-4	0.452	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11822194	2L_11822194_SNP [dm3] 2L_11822194_SNP [dm6]	C	T	1.933e^-4	0.452	UPSTREAM Pde1c INTRON Pde1c
3L	7086999	3L_7086999_SNP [dm3] 3L_7093899_SNP [dm6]	T	G	1.937e^-4	0.452	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15543612	X_15543612_SNP [dm3] X_15649579_SNP [dm6]	G	A	1.940e^-4	0.452	INTERGENIC
3L	17933779	3L_17933779_SNP [dm3] 3L_17940679_SNP [dm6]	G	T	1.940e^-4	0.452	INTRON CG43174
3R	18025315	3R_18025315_SNP [dm3] 3R_22199593_SNP [dm6]	C	A	1.942e^-4	0.452	INTRON SKIP & 1 other
2L	3280667	2L_3280667_SNP [dm3] 2L_3280667_SNP [dm6]	C	A	1.944e^-4	0.452	UPSTREAM CG3332 INTERGENIC
2R	8839066	2R_8839066_SNP [dm3] 2R_12951561_SNP [dm6]	C	T	1.950e^-4	0.452	INTRON CG44251 & 1 other
2R	5237292	2R_5237292_SNP [dm3] 2R_9349787_SNP [dm6]	A	G	1.952e^-4	0.452	DOWNSTREAM Or45a INTRON CG13954 & 1 other
3L	12626539	3L_12626539_SNP [dm3] 3L_12633439_SNP [dm6]	G	A	1.953e^-4	0.452	EXON CR32111	TF binding site mE1_TFBS_cad
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	1.953e^-4	0.452	INTERGENIC
2R	8909626	2R_8909626_SNP [dm3] 2R_13022121_SNP [dm6]	G	A	1.956e^-4	0.452	INTERGENIC
3L	16511051	3L_16511051_SNP [dm3] 3L_16517951_SNP [dm6]	T	G	1.959e^-4	0.452	INTRON CG43373
2R	8977604	2R_8977604_SNP [dm3] 2R_13090099_SNP [dm6]	A	G	1.960e^-4	0.452	INTERGENIC	TF binding site mE1_TFBS_inv
X	10812052	X_10812052_SNP [dm3] X_10918019_SNP [dm6]	A	G	1.960e^-4	0.452	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15462327	3R_15462327_SNP [dm3] 3R_19636605_SNP [dm6]	T	G	1.962e^-4	0.452	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	2266067	3L_2266067_SNP [dm3] 3L_2266067_SNP [dm6]	A	T	1.970e^-4	0.452	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	1.970e^-4	0.452	INTRON Mhc
3L	14538712	3L_14538712_SNP [dm3] 3L_14545612_SNP [dm6]	C	T	1.972e^-4	0.452	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9588847	3L_9588847_SNP [dm3] 3L_9595747_SNP [dm6]	G	C	1.973e^-4	0.452	UTR_3_PRIME CG42673
3R	9961597	3R_9961597_SNP [dm3] 3R_14135875_SNP [dm6]	A	G	1.975e^-4	0.452	INTERGENIC
2R	14618778	2R_14618778_SNP [dm3] 2R_18731273_SNP [dm6]	G	A	1.976e^-4	0.452	UPSTREAM List INTRON Hs3st-A
X	8008800	X_8008800_SNP [dm3] X_8114767_SNP [dm6]	G	A	1.979e^-4	0.452	INTRON Gclc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14452634	2L_14452634_SNP [dm3] 2L_14452634_SNP [dm6]	C	G	1.982e^-4	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10435211	2R_10435211_SNP [dm3] 2R_14547706_SNP [dm6]	T	A	1.983e^-4	0.452	INTRON ttv
2R	12351076	2R_12351076_DEL [dm3] 2R_16463571_DEL [dm6]	CCC	C	1.987e^-4	0.452	INTERGENIC
3L	6755954	3L_6755954_SNP [dm3] 3L_6762854_SNP [dm6]	G	T	1.990e^-4	0.452	INTRON CG32392
X	16083190	X_16083190_SNP [dm3] X_16189157_SNP [dm6]	G	A	1.991e^-4	0.452	INTERGENIC
3L	7919564	3L_7919564_SNP [dm3] 3L_7926464_SNP [dm6]	T	A	1.993e^-4	0.452	UTR_3_PRIME syd DOWNSTREAM syd
3R	3148749	3R_3148749_SNP [dm3] 3R_7323027_SNP [dm6]	A	T	2.000e^-4	0.452	INTERGENIC
2R	17638309	2R_17638309_SNP [dm3] 2R_21750804_SNP [dm6]	G	T	2.003e^-4	0.452	INTERGENIC
2R	8839015	2R_8839015_SNP [dm3] 2R_12951510_SNP [dm6]	G	A	2.008e^-4	0.452	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
3R	16175110	3R_16175110_SNP [dm3] 3R_20349388_SNP [dm6]	C	T	2.008e^-4	0.452	INTERGENIC
X	8008242	X_8008242_SNP [dm3] X_8114209_SNP [dm6]	C	A	2.010e^-4	0.452	INTRON Gclc	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	14712877	2R_14712877_SNP [dm3] 2R_18825372_SNP [dm6]	A	C	2.011e^-4	0.452	INTRON CG15097
3R	24498718	3R_24498718_SNP [dm3] 3R_28672996_SNP [dm6]	T	C	2.015e^-4	0.452	DOWNSTREAM CG9989 INTERGENIC
2R	5305577	2R_5305577_SNP [dm3] 2R_9418072_SNP [dm6]	G	A	2.015e^-4	0.452	DOWNSTREAM wun2 INTERGENIC
2L	18423943	2L_18423943_SNP [dm3] 2L_18423943_SNP [dm6]	T	A	2.015e^-4	0.452	INTERGENIC
2R	7480819	2R_7480819_SNP [dm3] 2R_11593314_SNP [dm6]	T	A	2.027e^-4	0.452	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10243027	2L_10243027_SNP [dm3] 2L_10243027_SNP [dm6]	T	C	2.029e^-4	0.452	SYNONYMOUS_CODING chico DOWNSTREAM me31B INTRON CR44995
3L	15453125	3L_15453125_SNP [dm3] 3L_15460025_SNP [dm6]	C	T	2.030e^-4	0.452	INTERGENIC
3L	15453136	3L_15453136_SNP [dm3] 3L_15460036_SNP [dm6]	G	T	2.030e^-4	0.452	INTERGENIC
2L	8260812	2L_8260812_SNP [dm3] 2L_8260812_SNP [dm6]	G	T	2.032e^-4	0.452	SYNONYMOUS_CODING Btk29A
3L	16511067	3L_16511067_INS [dm3] 3L_16517967_INS [dm6]	C	CGATAT	2.033e^-4	0.452	INTRON CG43373
3L	4901159	3L_4901159_SNP [dm3] 3L_4901159_SNP [dm6]	C	G	2.035e^-4	0.452	DOWNSTREAM CG13704 INTERGENIC
3R	24901783	3R_24901783_SNP [dm3] 3R_29076061_SNP [dm6]	T	G	2.037e^-4	0.452	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9938646	2R_9938646_SNP [dm3] 2R_14051141_SNP [dm6]	A	G	2.038e^-4	0.452	INTRON mam
2R	9436939	2R_9436939_SNP [dm3] 2R_13549434_SNP [dm6]	G	A	2.039e^-4	0.452	SYNONYMOUS_CODING CG33156
2L	10105729	2L_10105729_SNP [dm3] 2L_10105729_SNP [dm6]	A	G	2.041e^-4	0.452	INTRON CG44153 & 1 other
X	8884632	X_8884632_SNP [dm3] X_8990599_SNP [dm6]	T	A	2.042e^-4	0.452	INTRON rdgA & 1 other
3L	8052183	3L_8052183_SNP [dm3] 3L_8059083_SNP [dm6]	T	C	2.046e^-4	0.452	UPSTREAM bip1 INTERGENIC
2R	14712643	2R_14712643_SNP [dm3] 2R_18825138_SNP [dm6]	A	G	2.048e^-4	0.452	INTRON CG15097	TF binding site mE1_TFBS_chinmo
3R	21916690	3R_21916690_SNP [dm3] 3R_26090968_SNP [dm6]	C	A	2.053e^-4	0.452	INTRON dys	regulatory region REDfly_CRMs
3R	25584713	3R_25584713_DEL [dm3] 3R_29758991_DEL [dm6]	CGCACTCCCAATGGTTTTCA...	C	2.054e^-4	0.452	EXON CR44953	TF binding site mE1_TFBS_HSA
X	3645633	X_3645633_SNP [dm3] X_3751600_SNP [dm6]	A	G	2.063e^-4	0.454	INTRON tlk
3L	660986	3L_660986_SNP [dm3] 3L_660986_SNP [dm6]	A	G	2.066e^-4	0.454	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8071434	3L_8071434_SNP [dm3] 3L_8078334_SNP [dm6]	G	A	2.071e^-4	0.454	INTRON Ect4	TF binding site mE1_TFBS_Kr
3R	14804899	3R_14804899_SNP [dm3] 3R_18979177_SNP [dm6]	C	T	2.073e^-4	0.454	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
3L	4387996	3L_4387996_SNP [dm3] 3L_4387996_SNP [dm6]	G	C	2.078e^-4	0.455	INTRON slow
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	2.080e^-4	0.455	INTRON CG31221
X	11570221	X_11570221_SNP [dm3] X_11676188_SNP [dm6]	A	T	2.089e^-4	0.455	UTR_3_PRIME Ptp10D	TF binding site mE1_TFBS_kn
2R	14575406	2R_14575406_INS [dm3] 2R_18687901_INS [dm6]	T	TAT	2.092e^-4	0.455	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18872325	3R_18872325_SNP [dm3] 3R_23046603_SNP [dm6]	C	T	2.092e^-4	0.455	INTRON CG17121
2L	4122914	2L_4122914_SNP [dm3] 2L_4122914_SNP [dm6]	A	C	2.096e^-4	0.455	NON_SYNONYMOUS_CODING Sr-CI	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24492022	3R_24492022_SNP [dm3] 3R_28666300_SNP [dm6]	T	G	2.098e^-4	0.455	INTERGENIC
3L	19927484	3L_19927484_SNP [dm3] 3L_19934384_SNP [dm6]	A	G	2.100e^-4	0.455	DOWNSTREAM CR45678 INTERGENIC
3L	15897755	3L_15897755_SNP [dm3] 3L_15904655_SNP [dm6]	G	C	2.101e^-4	0.455	SPLICE_SITE_REGION sff INTRON sff
3L	7768962	3L_7768962_SNP [dm3] 3L_7775862_SNP [dm6]	C	T	2.106e^-4	0.455	UPSTREAM Clk INTERGENIC	regulatory region REDfly_CRMs
3L	15452748	3L_15452748_SNP [dm3] 3L_15459648_SNP [dm6]	T	A	2.106e^-4	0.455	INTERGENIC
X	20877592	X_20877592_SNP [dm3] X_21006565_SNP [dm6]	T	A	2.108e^-4	0.455	INTERGENIC
2R	17868833	2R_17868833_SNP [dm3] 2R_21981328_SNP [dm6]	A	T	2.115e^-4	0.456	DOWNSTREAM Gr58a INTERGENIC
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	2.117e^-4	0.456	INTRON Mhc
3R	22287091	3R_22287091_SNP [dm3] 3R_26461369_SNP [dm6]	G	A	2.122e^-4	0.457	UPSTREAM CG5455 DOWNSTREAM CG14238 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11881419	2L_11881419_SNP [dm3] 2L_11881419_SNP [dm6]	C	G	2.123e^-4	0.457	INTRON Pde1c	TF binding site mE1_TFBS_inv
3R	25657381	3R_25657381_SNP [dm3] 3R_29831659_SNP [dm6]	G	A	2.126e^-4	0.457	INTRON Atg16
2L	15254842	2L_15254842_SNP [dm3] 2L_15254842_SNP [dm6]	T	C	2.144e^-4	0.46	UTR_3_PRIME Pol32 DOWNSTREAM Pol32 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26859844	3R_26859844_SNP [dm3] 3R_31034122_SNP [dm6]	C	G	2.146e^-4	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10582519	2L_10582519_SNP [dm3] 2L_10582519_SNP [dm6]	C	G	2.153e^-4	0.461	UPSTREAM CG34161 INTRON Trim9
3L	10903842	3L_10903842_SNP [dm3] 3L_10910742_SNP [dm6]	T	G	2.166e^-4	0.463	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9964529	3R_9964529_DEL [dm3] 3R_14138807_DEL [dm6]	CATT	C	2.173e^-4	0.464	INTERGENIC
3L	14478851	3L_14478851_SNP [dm3] 3L_14485751_SNP [dm6]	T	C	2.177e^-4	0.464	INTRON bbg
2R	9454355	2R_9454355_SNP [dm3] 2R_13566850_SNP [dm6]	T	C	2.179e^-4	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	968946	X_968946_SNP [dm3] X_1074913_SNP [dm6]	G	T	2.195e^-4	0.467	UTR_3_PRIME CG3655 INTRON CR44779
3R	10436203	3R_10436203_SNP [dm3] 3R_14610481_SNP [dm6]	T	C	2.205e^-4	0.469	INTRON CG14853
3L	14710182	3L_14710182_SNP [dm3] 3L_14717082_SNP [dm6]	C	G	2.206e^-4	0.469	INTRON ome	regulatory region REDfly_CRMs
3R	19208031	3R_19208031_SNP [dm3] 3R_23382309_SNP [dm6]	T	G	2.210e^-4	0.469	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2538529	2L_2538529_SNP [dm3] 2L_2538529_SNP [dm6]	C	T	2.211e^-4	0.469	INTERGENIC
3L	10526815	3L_10526815_SNP [dm3] 3L_10533715_SNP [dm6]	T	A	2.216e^-4	0.469	INTRON A2bp1
X	8884630	X_8884630_SNP [dm3] X_8990597_SNP [dm6]	G	T	2.225e^-4	0.471	INTRON rdgA & 1 other
X	10865365	X_10865365_SNP [dm3] X_10971332_SNP [dm6]	C	T	2.235e^-4	0.471	INTRON CG42339
3L	7087263	3L_7087263_SNP [dm3] 3L_7094163_SNP [dm6]	A	G	2.239e^-4	0.471	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_sbb
2L	15170653	2L_15170653_SNP [dm3] 2L_15170653_SNP [dm6]	C	T	2.240e^-4	0.471	INTRON CG4168
3L	1626990	3L_1626990_SNP [dm3] 3L_1626990_SNP [dm6]	G	A	2.240e^-4	0.471	UTR_3_PRIME CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2741831	3R_2741831_SNP [dm3] 3R_6916109_SNP [dm6]	A	T	2.241e^-4	0.471	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad
3R	23118530	3R_23118530_SNP [dm3] 3R_27292808_SNP [dm6]	C	T	2.244e^-4	0.471	UPSTREAM CG3348 INTERGENIC
2L	16366056	2L_16366056_SNP [dm3] 2L_16366056_SNP [dm6]	C	T	2.245e^-4	0.471	SYNONYMOUS_CODING jhamt
2R	13746388	2R_13746388_SNP [dm3] 2R_17858883_SNP [dm6]	C	T	2.252e^-4	0.471	INTRON olf186-F
3R	26983956	3R_26983956_INS [dm3] 3R_31158234_INS [dm6]	T	TT	2.255e^-4	0.471	SPLICE_SITE_REGION Gycbeta100B UTR_3_PRIME stops INTRON Gycbeta100B	TF binding site mE1_TFBS_chinmo
3R	24572715	3R_24572715_SNP [dm3] 3R_28746993_SNP [dm6]	A	G	2.256e^-4	0.471	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13377120	3L_13377120_DEL [dm3] 3L_13384020_DEL [dm6]	TT	T	2.257e^-4	0.471	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	7450003	3L_7450003_SNP [dm3] 3L_7456903_SNP [dm6]	G	A	2.259e^-4	0.471	SYNONYMOUS_CODING ppk26
2R	14556293	2R_14556293_SNP [dm3] 2R_18668788_SNP [dm6]	G	A	2.262e^-4	0.471	INTRON edl
3R	6689338	3R_6689338_SNP [dm3] 3R_10863616_SNP [dm6]	T	C	2.267e^-4	0.471	UTR_3_PRIME SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
X	15043321	X_15043321_DEL [dm3] X_15149288_DEL [dm6]	CCATAGATGATC...	C	2.268e^-4	0.471	INTRON CG9095
2R	7482863	2R_7482863_SNP [dm3] 2R_11595358_SNP [dm6]	G	C	2.273e^-4	0.471	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15080908	2L_15080908_SNP [dm3] 2L_15080908_SNP [dm6]	C	T	2.276e^-4	0.471	INTRON CG15270
3L	9617485	3L_9617485_SNP [dm3] 3L_9624385_SNP [dm6]	A	T	2.283e^-4	0.471	DOWNSTREAM LanB2 INTRON CG3335
3L	11480162	3L_11480162_SNP [dm3] 3L_11487062_SNP [dm6]	T	C	2.289e^-4	0.471	UPSTREAM chrb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
3L	14475219	3L_14475219_SNP [dm3] 3L_14482119_SNP [dm6]	G	A	2.291e^-4	0.471	INTRON bbg
2R	7561484	2R_7561484_SNP [dm3] 2R_11673979_SNP [dm6]	G	T	2.293e^-4	0.471	SYNONYMOUS_CODING Tret1-1 INTRON Roc2
3L	4289334	3L_4289334_SNP [dm3] 3L_4289334_SNP [dm6]	C	T	2.293e^-4	0.471	NON_SYNONYMOUS_CODING Hexo1 DOWNSTREAM TfIIEbeta	TF binding site mE1_TFBS_chinmo
2R	19075123	2R_19075123_SNP [dm3] 2R_23187600_SNP [dm6]	T	G	2.293e^-4	0.471	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13915065	3R_13915065_SNP [dm3] 3R_18089343_SNP [dm6]	T	A	2.296e^-4	0.471	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9819866	3L_9819866_SNP [dm3] 3L_9826766_SNP [dm6]	A	G	2.297e^-4	0.471	SYNONYMOUS_CODING CG43897 INTRON CG43897
3L	3327286	3L_3327286_SNP [dm3] 3L_3327286_SNP [dm6]	C	A	2.299e^-4	0.471	INTRON CG11526 & 1 other
2R	9960537	2R_9960537_SNP [dm3] 2R_14073032_SNP [dm6]	A	T	2.301e^-4	0.471	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4167186	X_4167186_SNP [dm3] X_4273153_SNP [dm6]	A	C	2.301e^-4	0.471	INTERGENIC
3L	4078877	3L_4078877_SNP [dm3] 3L_4078877_SNP [dm6]	T	C	2.302e^-4	0.471	INTRON Gad1
3R	15467503	3R_15467503_SNP [dm3] 3R_19641781_SNP [dm6]	A	G	2.302e^-4	0.471	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12095829	2R_12095829_INS [dm3] 2R_16208324_INS [dm6]	T	TGGCTAGCT	2.305e^-4	0.471	UPSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	9583513	3L_9583513_SNP [dm3] 3L_9590413_SNP [dm6]	C	T	2.308e^-4	0.471	INTRON CG42673
3R	25575947	3R_25575947_SNP [dm3] 3R_29750225_SNP [dm6]	C	T	2.324e^-4	0.472	SPLICE_SITE_REGION yata INTRON yata	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10727458	2R_10727458_SNP [dm3] 2R_14839953_SNP [dm6]	T	C	2.327e^-4	0.472	INTERGENIC
3R	10436408	3R_10436408_SNP [dm3] 3R_14610686_SNP [dm6]	C	T	2.331e^-4	0.472	INTRON CG14853
3R	10436392	3R_10436392_SNP [dm3] 3R_14610670_SNP [dm6]	C	A	2.335e^-4	0.472	INTRON CG14853
3L	4717606	3L_4717606_SNP [dm3] 3L_4717606_SNP [dm6]	C	G	2.337e^-4	0.472	INTRON RhoGEF64C
X	9630097	X_9630097_SNP [dm3] X_9736064_SNP [dm6]	C	T	2.338e^-4	0.472	INTRON Sp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11048163	2R_11048163_SNP [dm3] 2R_15160658_SNP [dm6]	G	T	2.338e^-4	0.472	INTRON igl
3R	18025307	3R_18025307_SNP [dm3] 3R_22199585_SNP [dm6]	C	T	2.340e^-4	0.472	INTRON SKIP & 1 other
3R	15462387	3R_15462387_SNP [dm3] 3R_19636665_SNP [dm6]	G	A	2.343e^-4	0.472	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	3926744	X_3926744_SNP [dm3] X_4032711_SNP [dm6]	A	C	2.343e^-4	0.472	INTERGENIC
3R	15161604	3R_15161604_DEL [dm3] 3R_19335882_DEL [dm6]	GCTTGTCAAAGGTG...	G	2.354e^-4	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24535850	3R_24535850_SNP [dm3] 3R_28710128_SNP [dm6]	G	A	2.356e^-4	0.472	INTRON htt
3R	18025314	3R_18025314_SNP [dm3] 3R_22199592_SNP [dm6]	G	A	2.361e^-4	0.472	INTRON SKIP & 1 other
2R	15423117	2R_15423117_SNP [dm3] 2R_19535612_SNP [dm6]	G	C	2.363e^-4	0.472	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4082346	3L_4082346_DEL [dm3] 3L_4082346_DEL [dm6]	GGGATTCAATAG...	G	2.364e^-4	0.472	INTRON Gad1
3R	24899774	3R_24899774_SNP [dm3] 3R_29074052_SNP [dm6]	G	A	2.364e^-4	0.472	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23235783	3R_23235783_SNP [dm3] 3R_27410061_SNP [dm6]	G	A	2.366e^-4	0.472	INTRON side
3R	13970198	3R_13970198_SNP [dm3] 3R_18144476_SNP [dm6]	A	T	2.366e^-4	0.472	INTERGENIC
3L	8512368	3L_8512368_SNP [dm3] 3L_8519268_SNP [dm6]	C	A	2.369e^-4	0.472	DOWNSTREAM CG6765 INTRON GstO3
3L	2717613	3L_2717613_SNP [dm3] 3L_2717613_SNP [dm6]	T	C	2.369e^-4	0.472	DOWNSTREAM Mrtf INTERGENIC
3R	24624122	3R_24624122_SNP [dm3] 3R_28798400_SNP [dm6]	A	C	2.370e^-4	0.472	INTERGENIC
2R	9538817	2R_9538817_SNP [dm3] 2R_13651312_SNP [dm6]	T	C	2.370e^-4	0.472	INTRON fas
2L	14599328	2L_14599328_SNP [dm3] 2L_14599328_SNP [dm6]	T	C	2.373e^-4	0.472	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	2.379e^-4	0.472	INTRON nwk
2L	10255018	2L_10255018_SNP [dm3] 2L_10255018_SNP [dm6]	C	A	2.384e^-4	0.472	DOWNSTREAM Ror INTRON CG5676
3L	16266201	3L_16266201_SNP [dm3] 3L_16273101_SNP [dm6]	A	G	2.391e^-4	0.472	INTRON CG13066
3R	15050786	3R_15050786_DEL [dm3] 3R_19225064_DEL [dm6]	TTCCATTATAAGATTGAT...	T	2.391e^-4	0.472	INTRON vib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	13768080	3R_13768080_SNP [dm3] 3R_17942358_SNP [dm6]	G	A	2.391e^-4	0.472	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	2.392e^-4	0.472	INTRON nwk
3R	26687183	3R_26687183_SNP [dm3] 3R_30861461_SNP [dm6]	G	A	2.396e^-4	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	26318664	3R_26318664_SNP [dm3] 3R_30492942_SNP [dm6]	A	C	2.396e^-4	0.472	NON_SYNONYMOUS_CODING PH4alphaMP DOWNSTREAM PH4alphaSG2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3829782	X_3829782_SNP [dm3] X_3935749_SNP [dm6]	G	A	2.400e^-4	0.472	SYNONYMOUS_CODING CG2938 UPSTREAM CG2941	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12924399	2R_12924399_SNP [dm3] 2R_17036894_SNP [dm6]	T	A	2.400e^-4	0.472	SYNONYMOUS_CODING RhoGEF2 EXON CR45144
3L	1630015	3L_1630015_DEL [dm3] 3L_1630015_DEL [dm6]	TAAGCGTAGGCTCCC...	A	2.400e^-4	0.472	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9623487	3L_9623487_SNP [dm3] 3L_9630387_SNP [dm6]	A	C	2.402e^-4	0.472	SYNONYMOUS_CODING CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2784912	3L_2784912_SNP [dm3] 3L_2784912_SNP [dm6]	A	G	2.407e^-4	0.472	INTRON pgant6
3L	4398427	3L_4398427_SNP [dm3] 3L_4398427_SNP [dm6]	C	T	2.412e^-4	0.472	INTRON slow
3R	25025520	3R_25025520_SNP [dm3] 3R_29199798_SNP [dm6]	T	G	2.413e^-4	0.472	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15463352	3R_15463352_SNP [dm3] 3R_19637630_SNP [dm6]	A	G	2.414e^-4	0.472	INTRON subdued
3R	25667014	3R_25667014_SNP [dm3] 3R_29841292_SNP [dm6]	A	G	2.419e^-4	0.472	UPSTREAM Cad99C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	16507019	X_16507019_SNP [dm3] X_16612986_SNP [dm6]	C	T	2.420e^-4	0.472	INTRON mbt
X	8884607	X_8884607_SNP [dm3] X_8990574_SNP [dm6]	A	G	2.423e^-4	0.472	INTRON rdgA & 1 other
3L	3793787	3L_3793787_SNP [dm3] 3L_3793787_SNP [dm6]	T	G	2.429e^-4	0.472	INTRON CG32264
3R	15103184	3R_15103184_SNP [dm3] 3R_19277462_SNP [dm6]	G	A	2.432e^-4	0.472	INTERGENIC
3L	680550	3L_680550_DEL [dm3] 3L_680550_DEL [dm6]	TAT	T	2.434e^-4	0.472	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	24899203	3R_24899203_SNP [dm3] 3R_29073481_SNP [dm6]	A	G	2.434e^-4	0.472	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24901503	3R_24901503_SNP [dm3] 3R_29075781_SNP [dm6]	G	T	2.434e^-4	0.472	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7561490	2R_7561490_SNP [dm3] 2R_11673985_SNP [dm6]	T	C	2.436e^-4	0.472	SYNONYMOUS_CODING Tret1-1 INTRON Roc2
3L	9618364	3L_9618364_SNP [dm3] 3L_9625264_SNP [dm6]	T	C	2.442e^-4	0.473	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11326454	3L_11326454_DEL [dm3] 3L_11333354_DEL [dm6]	GGTTTA	G	2.448e^-4	0.473	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	2.450e^-4	0.473	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	17500800	2L_17500800_SNP [dm3] 2L_17500800_SNP [dm6]	G	A	2.452e^-4	0.473	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	14599105	2L_14599105_SNP [dm3] 2L_14599105_SNP [dm6]	A	G	2.458e^-4	0.473	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14563609	3L_14563609_SNP [dm3] 3L_14570509_SNP [dm6]	C	A	2.461e^-4	0.473	INTERGENIC
3L	2376769	3L_2376769_SNP [dm3] 3L_2376769_SNP [dm6]	G	C	2.464e^-4	0.473	SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004
2R	10829658	2R_10829658_SNP [dm3] 2R_14942153_SNP [dm6]	G	T	2.464e^-4	0.473	UPSTREAM CG10257 INTERGENIC
2L	15083018	2L_15083018_SNP [dm3] 2L_15083018_SNP [dm6]	T	C	2.465e^-4	0.473	INTRON CG15270
2L	3678948	2L_3678948_SNP [dm3] 2L_3678948_SNP [dm6]	C	T	2.467e^-4	0.473	INTRON CG34340
2L	10711731	2L_10711731_SNP [dm3] 2L_10711731_SNP [dm6]	T	G	2.467e^-4	0.473	DOWNSTREAM CR44407 INTERGENIC
2L	21998986	2L_21998986_SNP [dm3] 2L_21998986_SNP [dm6]	G	A	2.471e^-4	0.473	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2R	12014023	2R_12014023_SNP [dm3] 2R_16126518_SNP [dm6]	G	A	2.472e^-4	0.473	INTRON spin	TF binding site BDTNP1_TFBS_dl
2L	14452683	2L_14452683_SNP [dm3] 2L_14452683_SNP [dm6]	G	A	2.480e^-4	0.473	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	18025308	3R_18025308_SNP [dm3] 3R_22199586_SNP [dm6]	C	T	2.485e^-4	0.473	INTRON SKIP & 1 other
2R	14527981	2R_14527981_SNP [dm3] 2R_18640476_SNP [dm6]	C	A	2.490e^-4	0.473	NON_SYNONYMOUS_CODING CheA56a UPSTREAM tRNA:G3:55E DOWNSTREAM tRNA:CR30227 & 1 other
3L	7452691	3L_7452691_SNP [dm3] 3L_7459591_SNP [dm6]	C	G	2.493e^-4	0.473	DOWNSTREAM ppk26 INTERGENIC
3R	17216331	3R_17216331_SNP [dm3] 3R_21390609_SNP [dm6]	T	C	2.493e^-4	0.473	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17618118	2R_17618118_SNP [dm3] 2R_21730613_SNP [dm6]	C	T	2.494e^-4	0.473	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10229212	2R_10229212_SNP [dm3] 2R_14341707_SNP [dm6]	C	A	2.495e^-4	0.473	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3L	19948540	3L_19948540_SNP [dm3] 3L_19955440_SNP [dm6]	G	A	2.500e^-4	0.473	UPSTREAM CG42654 INTRON Ac76E & 1 other
X	15543623	X_15543623_SNP [dm3] X_15649590_SNP [dm6]	T	A	2.501e^-4	0.473	INTERGENIC
X	8813007	X_8813007_SNP [dm3] X_8918974_SNP [dm6]	T	C	2.508e^-4	0.473	DOWNSTREAM CR44111 INTRON rdgA
3L	7087325	3L_7087325_SNP [dm3] 3L_7094225_SNP [dm6]	C	A	2.509e^-4	0.473	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	3367518	2L_3367518_SNP [dm3] 2L_3367518_SNP [dm6]	G	A	2.510e^-4	0.473	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
3R	19792941	3R_19792941_SNP [dm3] 3R_23967219_SNP [dm6]	T	G	2.517e^-4	0.473	INTRON CG31140
3R	10784214	3R_10784214_SNP [dm3] 3R_14958492_SNP [dm6]	G	T	2.520e^-4	0.473	INTERGENIC
3R	8440381	3R_8440381_SNP [dm3] 3R_12614659_SNP [dm6]	T	C	2.526e^-4	0.473	INTERGENIC
2R	18029702	2R_18029702_SNP [dm3] 2R_22142197_SNP [dm6]	G	A	2.528e^-4	0.473	DOWNSTREAM gom INTRON a
3R	24899458	3R_24899458_SNP [dm3] 3R_29073736_SNP [dm6]	G	T	2.532e^-4	0.473	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9618011	3L_9618011_SNP [dm3] 3L_9624911_SNP [dm6]	G	C	2.537e^-4	0.473	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6946078	3R_6946078_SNP [dm3] 3R_11120356_SNP [dm6]	T	C	2.542e^-4	0.473	INTERGENIC
2R	10803034	2R_10803034_SNP [dm3] 2R_14915529_SNP [dm6]	A	T	2.542e^-4	0.473	INTRON CG10249

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.182e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.0627

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.8496	0.0537

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2180 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16848102	2R_16848102_SNP [dm3] 2R_20960597_SNP [dm6]	A	G	4.529e^-7	0.537	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	15750840	3R_15750840_SNP [dm3] 3R_19925118_SNP [dm6]	T	C	7.275e^-7	0.537	UTR_5_PRIME CG4462
2L	9155549	2L_9155549_SNP [dm3] 2L_9155549_SNP [dm6]	G	A	1.050e^-6	0.537	INTRON CG32982
3L	4917873	3L_4917873_SNP [dm3] 3L_4917873_SNP [dm6]	G	A	1.495e^-6	0.537	INTRON Rh50	TF binding site mE1_TFBS_chinmo
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	1.667e^-6	0.537	INTRON CG42671	TF binding site mE1_TFBS_cad
3R	15750761	3R_15750761_SNP [dm3] 3R_19925039_SNP [dm6]	T	G	1.975e^-6	0.537	INTRON CG4462
3R	15750846	3R_15750846_SNP [dm3] 3R_19925124_SNP [dm6]	T	C	2.422e^-6	0.537	UTR_5_PRIME CG4462
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	2.486e^-6	0.537	SYNONYMOUS_CODING Plod
2L	4454897	2L_4454897_SNP [dm3] 2L_4454897_SNP [dm6]	G	A	2.580e^-6	0.537	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4917874	3L_4917874_SNP [dm3] 3L_4917874_SNP [dm6]	G	A	2.863e^-6	0.537	INTRON Rh50	TF binding site mE1_TFBS_chinmo
2L	4454918	2L_4454918_SNP [dm3] 2L_4454918_SNP [dm6]	G	C	3.776e^-6	0.547	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11344251	3L_11344251_SNP [dm3] 3L_11351151_SNP [dm6]	T	C	3.894e^-6	0.547	INTERGENIC
3L	4918184	3L_4918184_SNP [dm3] 3L_4918184_SNP [dm6]	T	A	4.051e^-6	0.547	INTRON Rh50
2L	4454894	2L_4454894_SNP [dm3] 2L_4454894_SNP [dm6]	C	T	4.124e^-6	0.547	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4454771	2L_4454771_SNP [dm3] 2L_4454771_SNP [dm6]	C	T	4.862e^-6	0.547	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	15620653	3L_15620653_SNP [dm3] 3L_15627553_SNP [dm6]	G	T	5.329e^-6	0.547	INTRON comm3
3L	11196804	3L_11196804_SNP [dm3] 3L_11203704_SNP [dm6]	A	T	5.538e^-6	0.547	INTRON Plod
3L	11343270	3L_11343270_SNP [dm3] 3L_11350170_SNP [dm6]	T	C	5.747e^-6	0.547	UPSTREAM CR45251 INTERGENIC
2L	4454764	2L_4454764_SNP [dm3] 2L_4454764_SNP [dm6]	T	A	6.290e^-6	0.547	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	6.304e^-6	0.547	INTERGENIC
2L	12038772	2L_12038772_SNP [dm3] 2L_12038772_SNP [dm6]	A	G	6.507e^-6	0.547	UTR_3_PRIME CG6766 UPSTREAM Tom70	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9155550	2L_9155550_SNP [dm3] 2L_9155550_SNP [dm6]	T	A	6.668e^-6	0.547	INTRON CG32982
3L	4918278	3L_4918278_SNP [dm3] 3L_4918278_SNP [dm6]	C	T	6.771e^-6	0.547	INTRON Rh50
2L	3488455	2L_3488455_SNP [dm3] 2L_3488455_SNP [dm6]	T	A	6.998e^-6	0.547	INTRON CG15414
3L	4918298	3L_4918298_SNP [dm3] 3L_4918298_SNP [dm6]	C	T	8.070e^-6	0.589	INTRON Rh50
2L	5871678	2L_5871678_SNP [dm3] 2L_5871678_SNP [dm6]	G	A	8.464e^-6	0.589	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25664186	3R_25664186_SNP [dm3] 3R_29838464_SNP [dm6]	A	G	8.853e^-6	0.589	INTERGENIC
3L	7185008	3L_7185008_SNP [dm3] 3L_7191908_SNP [dm6]	C	G	9.084e^-6	0.589	INTERGENIC
2R	16848134	2R_16848134_SNP [dm3] 2R_20960629_SNP [dm6]	A	G	9.730e^-6	0.589	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	15750841	3R_15750841_SNP [dm3] 3R_19925119_SNP [dm6]	T	C	9.780e^-6	0.589	UTR_5_PRIME CG4462
2R	14454996	2R_14454996_SNP [dm3] 2R_18567491_SNP [dm6]	G	A	9.945e^-6	0.589	INTRON GEFmeso	TF binding site mE1_TFBS_cad
3L	1801338	3L_1801338_SNP [dm3] 3L_1801338_SNP [dm6]	G	A	1.006e^-5	0.589	SYNONYMOUS_CODING Patj DOWNSTREAM JTBR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15750740	3R_15750740_SNP [dm3] 3R_19925018_SNP [dm6]	A	G	1.036e^-5	0.589	INTRON CG4462
2R	9582958	2R_9582958_SNP [dm3] 2R_13695453_SNP [dm6]	A	T	1.108e^-5	0.611	INTRON fas
2L	9155604	2L_9155604_SNP [dm3] 2L_9155604_SNP [dm6]	T	A	1.193e^-5	0.626	INTRON CG32982
3L	11212464	3L_11212464_SNP [dm3] 3L_11219364_SNP [dm6]	T	G	1.202e^-5	0.626	INTRON CG42671
3L	11196972	3L_11196972_SNP [dm3] 3L_11203872_SNP [dm6]	G	A	1.241e^-5	0.629	INTRON Plod
2R	18153166	2R_18153166_SNP [dm3] 2R_22265661_SNP [dm6]	G	A	1.460e^-5	0.721	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10235588	3L_10235588_SNP [dm3] 3L_10242488_SNP [dm6]	G	A	1.575e^-5	0.736	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	13970249	3R_13970249_SNP [dm3] 3R_18144527_SNP [dm6]	C	G	1.604e^-5	0.736	INTERGENIC
3L	10921613	3L_10921613_SNP [dm3] 3L_10928513_SNP [dm6]	G	C	1.647e^-5	0.736	INTERGENIC
X	18223168	X_18223168_SNP [dm3] X_18329135_SNP [dm6]	C	A	1.718e^-5	0.736	SYNONYMOUS_CODING CG6123
2L	10633964	2L_10633964_SNP [dm3] 2L_10633964_SNP [dm6]	G	A	1.763e^-5	0.736	INTRON CG7329
3L	5786619	3L_5786619_SNP [dm3] 3L_5793519_SNP [dm6]	G	A	1.773e^-5	0.736	SYNONYMOUS_CODING Bre1 DOWNSTREAM Tektin-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	4755041	3R_4755041_SNP [dm3] 3R_8929319_SNP [dm6]	C	G	1.794e^-5	0.736	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3L	8216663	3L_8216663_SNP [dm3] 3L_8223563_SNP [dm6]	G	C	1.804e^-5	0.736	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3R	24900244	3R_24900244_SNP [dm3] 3R_29074522_SNP [dm6]	T	C	1.979e^-5	0.748	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17841499	3R_17841499_SNP [dm3] 3R_22015777_SNP [dm6]	C	T	2.052e^-5	0.748	DOWNSTREAM CG6439 INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	22548822	3L_22548822_SNP [dm3] 3L_22555722_SNP [dm6]	G	A	2.070e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2243767	2L_2243767_SNP [dm3] 2L_2243767_SNP [dm6]	G	T	2.130e^-5	0.748	SYNONYMOUS_CODING CG4267
2R	15055083	2R_15055083_SNP [dm3] 2R_19167578_SNP [dm6]	C	T	2.145e^-5	0.748	INTRON CG10737
3R	25664389	3R_25664389_SNP [dm3] 3R_29838667_SNP [dm6]	T	A	2.177e^-5	0.748	INTERGENIC
3R	15068004	3R_15068004_SNP [dm3] 3R_19242282_SNP [dm6]	A	G	2.268e^-5	0.748	UTR_3_PRIME unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9582960	2R_9582960_SNP [dm3] 2R_13695455_SNP [dm6]	C	T	2.333e^-5	0.748	INTRON fas
3R	15762952	3R_15762952_SNP [dm3] 3R_19937230_SNP [dm6]	G	C	2.414e^-5	0.748	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2243785	2L_2243785_SNP [dm3] 2L_2243785_SNP [dm6]	C	A	2.474e^-5	0.748	SYNONYMOUS_CODING CG4267
2L	3637531	2L_3637531_SNP [dm3] 2L_3637531_SNP [dm6]	A	C	2.509e^-5	0.748	UPSTREAM mir-4972 INTRON for
3L	9593719	3L_9593719_SNP [dm3] 3L_9600619_SNP [dm6]	T	A	2.545e^-5	0.748	SYNONYMOUS_CODING CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
2L	14599303	2L_14599303_INS [dm3] 2L_14599303_INS [dm6]	A	AC	2.556e^-5	0.748	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14599305	2L_14599305_SNP [dm3] 2L_14599305_SNP [dm6]	C	T	2.568e^-5	0.748	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11196965	3L_11196965_SNP [dm3] 3L_11203865_SNP [dm6]	A	G	2.573e^-5	0.748	INTRON Plod
2L	14599306	2L_14599306_SNP [dm3] 2L_14599306_SNP [dm6]	G	T	2.752e^-5	0.748	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13624818	3L_13624818_SNP [dm3] 3L_13631718_SNP [dm6]	G	A	2.809e^-5	0.748	INTRON bru-3
2R	1936467	2R_1936467_SNP [dm3] 2R_6048962_SNP [dm6]	T	C	2.817e^-5	0.748	DOWNSTREAM CG34212 INTERGENIC
3R	25299660	3R_25299660_SNP [dm3] 3R_29473938_SNP [dm6]	T	G	2.877e^-5	0.748	INTRON Ptp99A
3R	4687685	3R_4687685_SNP [dm3] 3R_8861963_SNP [dm6]	T	G	2.934e^-5	0.748	UPSTREAM tRNA:R:85Cb DOWNSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9821904	3L_9821904_SNP [dm3] 3L_9828804_SNP [dm6]	G	A	2.960e^-5	0.748	UPSTREAM CG43897 INTRON CG43897
3R	24985599	3R_24985599_SNP [dm3] 3R_29159877_SNP [dm6]	G	C	2.970e^-5	0.748	INTRON CG11897	TF binding site BDTNP1_TFBS_twi
3R	4755645	3R_4755645_SNP [dm3] 3R_8929923_SNP [dm6]	T	A	2.995e^-5	0.748	INTRON pyd	TF binding site mE1_TFBS_D
2L	14598153	2L_14598153_SNP [dm3] 2L_14598153_SNP [dm6]	A	G	3.022e^-5	0.748	UPSTREAM tRNA:P:35Ba INTERGENIC
2L	1257991	2L_1257991_SNP [dm3] 2L_1257991_SNP [dm6]	C	T	3.067e^-5	0.748	INTRON robo3
2R	14495219	2R_14495219_SNP [dm3] 2R_18607714_SNP [dm6]	T	C	3.199e^-5	0.748	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	25228555	3R_25228555_SNP [dm3] 3R_29402833_SNP [dm6]	T	C	3.272e^-5	0.748	INTRON Ptp99A
2L	19395176	2L_19395176_SNP [dm3] 2L_19395176_SNP [dm6]	T	G	3.307e^-5	0.748	SYNONYMOUS_CODING CG31798 INTRON CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25517196	3R_25517196_SNP [dm3] 3R_29691474_SNP [dm6]	G	A	3.340e^-5	0.748	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25664015	3R_25664015_SNP [dm3] 3R_29838293_SNP [dm6]	T	A	3.408e^-5	0.748	DOWNSTREAM CG15510 INTERGENIC
3R	22536361	3R_22536361_SNP [dm3] 3R_26710639_SNP [dm6]	T	C	3.412e^-5	0.748	INTRON amon
3R	15399385	3R_15399385_SNP [dm3] 3R_19573663_SNP [dm6]	A	C	3.461e^-5	0.748	INTRON Dys
3L	15622469	3L_15622469_SNP [dm3] 3L_15629369_SNP [dm6]	G	C	3.491e^-5	0.748	INTRON comm3
3L	8216698	3L_8216698_SNP [dm3] 3L_8223598_SNP [dm6]	C	A	3.598e^-5	0.748	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9539948	3R_9539948_SNP [dm3] 3R_13714226_SNP [dm6]	C	A	3.956e^-5	0.748	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	4684122	3R_4684122_DEL [dm3] 3R_8858400_DEL [dm6]	TT	T	4.029e^-5	0.748	UPSTREAM pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3L	10235620	3L_10235620_SNP [dm3] 3L_10242520_SNP [dm6]	C	T	4.045e^-5	0.748	DOWNSTREAM CR44541 & 1 other INTERGENIC
X	17125766	X_17125766_SNP [dm3] X_17231733_SNP [dm6]	G	A	4.072e^-5	0.748	UPSTREAM CG10597 INTERGENIC
3L	11343120	3L_11343120_SNP [dm3] 3L_11350020_SNP [dm6]	A	C	4.166e^-5	0.748	UPSTREAM CR45251 INTERGENIC
2L	9155999	2L_9155999_DEL [dm3] 2L_9155999_DEL [dm6]	AA	G	4.178e^-5	0.748	INTRON CG32982
3L	10051374	3L_10051374_SNP [dm3] 3L_10058274_SNP [dm6]	C	T	4.206e^-5	0.748	INTRON dpr6
3L	3969925	3L_3969925_SNP [dm3] 3L_3969925_SNP [dm6]	G	A	4.231e^-5	0.748	INTERGENIC
3R	25664352	3R_25664352_SNP [dm3] 3R_29838630_SNP [dm6]	T	C	4.253e^-5	0.748	INTERGENIC
3L	11146692	3L_11146692_SNP [dm3] 3L_11153592_SNP [dm6]	T	A	4.268e^-5	0.748	INTRON CG32082
3R	10436392	3R_10436392_SNP [dm3] 3R_14610670_SNP [dm6]	C	A	4.275e^-5	0.748	INTRON CG14853
2L	5871883	2L_5871883_SNP [dm3] 2L_5871883_SNP [dm6]	G	C	4.284e^-5	0.748	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	15971780	3L_15971780_SNP [dm3] 3L_15978680_SNP [dm6]	T	C	4.326e^-5	0.748	SYNONYMOUS_CODING CG17028 DOWNSTREAM CG17029 INTRON brm
3L	9499551	3L_9499551_DEL [dm3] 3L_9506451_DEL [dm6]	AATA	A	4.340e^-5	0.748	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14599615	2L_14599615_SNP [dm3] 2L_14599615_SNP [dm6]	G	C	4.393e^-5	0.748	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc & 1 other DOWNSTREAM osp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12286722	2L_12286722_SNP [dm3] 2L_12286722_SNP [dm6]	T	A	4.394e^-5	0.748	UPSTREAM aret INTRON aret
2L	9335096	2L_9335096_SNP [dm3] 2L_9335096_SNP [dm6]	T	G	4.433e^-5	0.748	INTRON Eaat1
2R	14271815	2R_14271815_SNP [dm3] 2R_18384310_SNP [dm6]	A	T	4.434e^-5	0.748	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
2L	14599530	2L_14599530_SNP [dm3] 2L_14599530_SNP [dm6]	C	T	4.501e^-5	0.748	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc & 1 other DOWNSTREAM osp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10214696	3L_10214696_SNP [dm3] 3L_10221596_SNP [dm6]	A	G	4.534e^-5	0.748	INTRON scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9586558	3L_9586558_SNP [dm3] 3L_9593458_SNP [dm6]	C	T	4.602e^-5	0.748	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	8013656	2L_8013656_SNP [dm3] 2L_8013656_SNP [dm6]	A	G	4.637e^-5	0.748	INTRON Tg
2R	16192431	2R_16192431_SNP [dm3] 2R_20304926_SNP [dm6]	C	T	4.674e^-5	0.748	SYNONYMOUS_CODING CG11200
2L	8013666	2L_8013666_SNP [dm3] 2L_8013666_SNP [dm6]	T	A	4.677e^-5	0.748	INTRON Tg
2L	1257976	2L_1257976_SNP [dm3] 2L_1257976_SNP [dm6]	G	A	4.684e^-5	0.748	INTRON robo3
2R	9979880	2R_9979880_SNP [dm3] 2R_14092375_SNP [dm6]	T	C	4.721e^-5	0.748	START_GAINED Prosap UTR_5_PRIME Prosap DOWNSTREAM CG42288
3L	9499545	3L_9499545_SNP [dm3] 3L_9506445_SNP [dm6]	C	A	4.751e^-5	0.748	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9156011	2L_9156011_SNP [dm3] 2L_9156011_SNP [dm6]	T	C	4.770e^-5	0.748	INTRON CG32982
3L	10214694	3L_10214694_SNP [dm3] 3L_10221594_SNP [dm6]	G	C	4.802e^-5	0.748	INTRON scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10235609	3L_10235609_SNP [dm3] 3L_10242509_SNP [dm6]	C	T	4.868e^-5	0.748	DOWNSTREAM CR44541 & 1 other INTERGENIC
2L	9155537	2L_9155537_SNP [dm3] 2L_9155537_SNP [dm6]	C	G	4.874e^-5	0.748	INTRON CG32982
2R	2056925	2R_2056925_SNP [dm3] 2R_6169420_SNP [dm6]	T	A	4.909e^-5	0.748	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	84988	2L_84988_SNP [dm3] 2L_84988_SNP [dm6]	A	T	4.923e^-5	0.748	INTRON net
2R	18490345	2R_18490345_SNP [dm3] 2R_22602840_SNP [dm6]	C	A	4.980e^-5	0.748	NON_SYNONYMOUS_CODING CG4294
3R	21015908	3R_21015908_SNP [dm3] 3R_25190186_SNP [dm6]	G	C	5.038e^-5	0.748	NON_SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4755110	3R_4755110_SNP [dm3] 3R_8929388_SNP [dm6]	C	T	5.069e^-5	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	4755199	3R_4755199_SNP [dm3] 3R_8929477_SNP [dm6]	C	G	5.099e^-5	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	10405567	3R_10405567_SNP [dm3] 3R_14579845_SNP [dm6]	A	T	5.103e^-5	0.748	INTRON stumps	TF binding site mE1_TFBS_Trl
2L	12199815	2L_12199815_SNP [dm3] 2L_12199815_SNP [dm6]	T	C	5.158e^-5	0.748	INTRON aret
3R	25532787	3R_25532787_INS [dm3] 3R_29707065_INS [dm6]	T	TAGCCAAGCTAAACAT...	5.233e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16365987	2L_16365987_SNP [dm3] 2L_16365987_SNP [dm6]	C	T	5.329e^-5	0.748	SYNONYMOUS_CODING jhamt
X	6952517	X_6952517_SNP [dm3] X_7058484_SNP [dm6]	C	G	5.409e^-5	0.748	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4754954	3R_4754954_SNP [dm3] 3R_8929232_SNP [dm6]	G	A	5.488e^-5	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	18025307	3R_18025307_SNP [dm3] 3R_22199585_SNP [dm6]	C	T	5.576e^-5	0.748	INTRON SKIP & 1 other
2R	8430840	2R_8430840_SNP [dm3] 2R_12543335_SNP [dm6]	T	C	5.595e^-5	0.748	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	84971	2L_84971_SNP [dm3] 2L_84971_SNP [dm6]	C	T	5.612e^-5	0.748	INTRON net
3R	15399578	3R_15399578_SNP [dm3] 3R_19573856_SNP [dm6]	A	G	5.695e^-5	0.748	INTRON Dys
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	5.819e^-5	0.748	UPSTREAM CG10597 INTERGENIC
2R	13492236	2R_13492236_SNP [dm3] 2R_17604731_SNP [dm6]	A	G	5.837e^-5	0.748	UPSTREAM tRNA:CR30231 & 1 other DOWNSTREAM CG10936 & 1 other INTERGENIC
2L	3896945	2L_3896945_SNP [dm3] 2L_3896945_SNP [dm6]	G	A	5.884e^-5	0.748	UPSTREAM capu INTRON capu
X	20851446	X_20851446_SNP [dm3] X_20980419_SNP [dm6]	T	C	5.894e^-5	0.748	INTERGENIC
3R	18025308	3R_18025308_SNP [dm3] 3R_22199586_SNP [dm6]	C	T	5.909e^-5	0.748	INTRON SKIP & 1 other
2L	11579811	2L_11579811_SNP [dm3] 2L_11579811_SNP [dm6]	C	T	5.936e^-5	0.748	INTERGENIC
3R	24900210	3R_24900210_SNP [dm3] 3R_29074488_SNP [dm6]	G	A	5.960e^-5	0.748	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13954469	3L_13954469_SNP [dm3] 3L_13961369_SNP [dm6]	G	A	5.982e^-5	0.748	SYNONYMOUS_CODING CG32137	TF binding site BDTNP1_TFBS_hb
3R	16193090	3R_16193090_SNP [dm3] 3R_20367368_SNP [dm6]	A	C	5.982e^-5	0.748	INTERGENIC
2L	15254842	2L_15254842_SNP [dm3] 2L_15254842_SNP [dm6]	T	C	6.028e^-5	0.748	UTR_3_PRIME Pol32 DOWNSTREAM Pol32 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4918183	3L_4918183_SNP [dm3] 3L_4918183_SNP [dm6]	G	T	6.106e^-5	0.748	INTRON Rh50
2L	13805706	2L_13805706_SNP [dm3] 2L_13805706_SNP [dm6]	A	C	6.109e^-5	0.748	INTRON CAH1
3R	13184600	3R_13184600_SNP [dm3] 3R_17358878_SNP [dm6]	A	G	6.120e^-5	0.748	INTRON beat-IIa
2L	12136333	2L_12136333_INS [dm3] 2L_12136333_INS [dm6]	T	TTTGTAAGT	6.165e^-5	0.748	INTERGENIC
3R	13970246	3R_13970246_SNP [dm3] 3R_18144524_SNP [dm6]	G	T	6.214e^-5	0.748	INTERGENIC
2R	14495188	2R_14495188_SNP [dm3] 2R_18607683_SNP [dm6]	C	T	6.228e^-5	0.748	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	10405512	3R_10405512_SNP [dm3] 3R_14579790_SNP [dm6]	A	T	6.235e^-5	0.748	INTRON stumps
3R	19572491	3R_19572491_SNP [dm3] 3R_23746769_SNP [dm6]	A	G	6.265e^-5	0.748	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5875053	2L_5875053_SNP [dm3] 2L_5875053_SNP [dm6]	A	G	6.304e^-5	0.748	INTRON rau
3L	9396972	3L_9396972_SNP [dm3] 3L_9403872_SNP [dm6]	G	A	6.357e^-5	0.748	UPSTREAM Cpr67B INTERGENIC
3L	11344044	3L_11344044_SNP [dm3] 3L_11350944_SNP [dm6]	T	C	6.361e^-5	0.748	INTERGENIC
2R	2057100	2R_2057100_SNP [dm3] 2R_6169595_SNP [dm6]	T	C	6.363e^-5	0.748	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3539007	2L_3539007_SNP [dm3] 2L_3539007_SNP [dm6]	C	T	6.366e^-5	0.748	UPSTREAM drm DOWNSTREAM CR44308 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	25664191	3R_25664191_DEL [dm3] 3R_29838469_DEL [dm6]	TACACATATT	T	6.393e^-5	0.748	INTERGENIC
3R	10436397	3R_10436397_SNP [dm3] 3R_14610675_SNP [dm6]	A	T	6.463e^-5	0.748	INTRON CG14853
2R	11545644	2R_11545644_INS [dm3] 2R_15658139_INS [dm6]	G	GGAG	6.473e^-5	0.748	CODON_INSERTION fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6937366	2L_6937366_SNP [dm3] 2L_6937366_SNP [dm6]	G	A	6.485e^-5	0.748	INTRON CG18304
3R	13970250	3R_13970250_SNP [dm3] 3R_18144528_SNP [dm6]	A	G	6.524e^-5	0.748	INTERGENIC
3R	19572363	3R_19572363_SNP [dm3] 3R_23746641_SNP [dm6]	G	A	6.539e^-5	0.748	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4918145	3L_4918145_SNP [dm3] 3L_4918145_SNP [dm6]	A	T	6.578e^-5	0.748	INTRON Rh50
3L	11344211	3L_11344211_SNP [dm3] 3L_11351111_SNP [dm6]	T	C	6.605e^-5	0.748	INTERGENIC
3R	4755164	3R_4755164_DEL [dm3] 3R_8929442_DEL [dm6]	TT	T	6.618e^-5	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	21668053	3R_21668053_SNP [dm3] 3R_25842331_SNP [dm6]	C	T	6.619e^-5	0.748	SYNONYMOUS_CODING alpha4GT2
X	6269905	X_6269905_SNP [dm3] X_6375872_SNP [dm6]	T	A	6.656e^-5	0.748	INTERGENIC
3R	25575906	3R_25575906_SNP [dm3] 3R_29750184_SNP [dm6]	C	T	6.731e^-5	0.748	INTRON yata	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13833358	2R_13833358_SNP [dm3] 2R_17945853_SNP [dm6]	C	T	6.743e^-5	0.748	INTERGENIC
3L	4918146	3L_4918146_INS [dm3] 3L_4918146_INS [dm6]	A	ACCGTAC	6.814e^-5	0.748	INTRON Rh50
3L	21865641	3L_21865641_SNP [dm3] 3L_21872541_SNP [dm6]	C	T	6.838e^-5	0.748	INTRON mub
2L	7278033	2L_7278033_SNP [dm3] 2L_7278033_SNP [dm6]	C	T	6.943e^-5	0.748	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	3866897	3R_3866897_SNP [dm3] 3R_8041175_SNP [dm6]	C	T	6.947e^-5	0.748	UPSTREAM CG43060 INTERGENIC
3R	18728785	3R_18728785_SNP [dm3] 3R_22903063_SNP [dm6]	G	T	6.960e^-5	0.748	INTRON klg
3L	10219457	3L_10219457_SNP [dm3] 3L_10226357_SNP [dm6]	G	A	7.133e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19032439	2R_19032439_SNP [dm3] 2R_23144916_SNP [dm6]	C	T	7.147e^-5	0.748	DOWNSTREAM Klp59D INTERGENIC
3R	25890524	3R_25890524_DEL [dm3] 3R_30064802_DEL [dm6]	GTGCTT	A	7.155e^-5	0.748	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12163604	X_12163604_SNP [dm3] X_12269571_SNP [dm6]	C	T	7.190e^-5	0.748	INTRON Ten-a
2R	19042244	2R_19042244_INS [dm3] 2R_23154721_INS [dm6]	C	CTATCGC	7.208e^-5	0.748	INTRON CG9899
2L	5875102	2L_5875102_SNP [dm3] 2L_5875102_SNP [dm6]	A	C	7.220e^-5	0.748	INTRON rau
2L	10352448	2L_10352448_SNP [dm3] 2L_10352448_SNP [dm6]	G	A	7.241e^-5	0.748	UPSTREAM CG34367 INTRON CG34367
2L	527058	2L_527058_SNP [dm3] 2L_527058_SNP [dm6]	G	C	7.260e^-5	0.748	INTRON ush	regulatory region REDfly_CRMs
3L	4394730	3L_4394730_SNP [dm3] 3L_4394730_SNP [dm6]	A	G	7.306e^-5	0.748	INTRON slow	TF binding site BDTNP1_TFBS_prd
3R	18025314	3R_18025314_SNP [dm3] 3R_22199592_SNP [dm6]	G	A	7.319e^-5	0.748	INTRON SKIP & 1 other
3L	10214698	3L_10214698_SNP [dm3] 3L_10221598_SNP [dm6]	T	A	7.382e^-5	0.748	INTRON scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10214707	3L_10214707_SNP [dm3] 3L_10221607_SNP [dm6]	A	G	7.382e^-5	0.748	SPLICE_SITE_REGION scramb1 INTRON scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19566811	3R_19566811_SNP [dm3] 3R_23741089_SNP [dm6]	C	A	7.388e^-5	0.748	INTRON Hmgcr
3R	4755179	3R_4755179_SNP [dm3] 3R_8929457_SNP [dm6]	T	G	7.557e^-5	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	21725536	3R_21725536_SNP [dm3] 3R_25899814_SNP [dm6]	G	A	7.587e^-5	0.748	UPSTREAM CG31091 DOWNSTREAM MCO3 INTERGENIC
3R	4755017	3R_4755017_SNP [dm3] 3R_8929295_SNP [dm6]	C	A	7.618e^-5	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_dl
2R	16192422	2R_16192422_SNP [dm3] 2R_20304917_SNP [dm6]	A	G	7.635e^-5	0.748	SYNONYMOUS_CODING CG11200
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	7.699e^-5	0.748	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25664384	3R_25664384_SNP [dm3] 3R_29838662_SNP [dm6]	G	A	7.710e^-5	0.748	INTERGENIC
3R	10436431	3R_10436431_SNP [dm3] 3R_14610709_SNP [dm6]	A	G	7.776e^-5	0.748	INTRON CG14853
2L	19395146	2L_19395146_SNP [dm3] 2L_19395146_SNP [dm6]	T	C	7.779e^-5	0.748	SYNONYMOUS_CODING CG31798 INTRON CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11222194	3L_11222194_SNP [dm3] 3L_11229094_SNP [dm6]	A	G	7.788e^-5	0.748	DOWNSTREAM CG42671 INTRON CG42671
3R	23132424	3R_23132424_SNP [dm3] 3R_27306702_SNP [dm6]	C	G	7.807e^-5	0.748	INTRON CG3339
3L	11196992	3L_11196992_SNP [dm3] 3L_11203892_SNP [dm6]	A	T	7.932e^-5	0.748	INTRON Plod
3L	8205329	3L_8205329_SNP [dm3] 3L_8212229_SNP [dm6]	T	C	7.949e^-5	0.748	SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
2L	4455058	2L_4455058_SNP [dm3] 2L_4455058_SNP [dm6]	A	G	7.988e^-5	0.748	NON_SYNONYMOUS_CODING CG15434 SPLICE_SITE_REGION CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25418562	3R_25418562_SNP [dm3] 3R_29592840_SNP [dm6]	A	C	8.046e^-5	0.748	UPSTREAM alph INTRON alph	TF binding site BDTNP1_TFBS_dl
2L	19395155	2L_19395155_SNP [dm3] 2L_19395155_SNP [dm6]	T	C	8.064e^-5	0.748	SYNONYMOUS_CODING CG31798 INTRON CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7278031	2L_7278031_SNP [dm3] 2L_7278031_SNP [dm6]	A	T	8.117e^-5	0.748	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	8835178	2R_8835178_SNP [dm3] 2R_12947673_SNP [dm6]	A	T	8.241e^-5	0.748	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16460470	3L_16460470_INS [dm3] 3L_16467370_INS [dm6]	A	AA	8.290e^-5	0.748	INTRON CG33158
3L	4918131	3L_4918131_SNP [dm3] 3L_4918131_SNP [dm6]	G	A	8.345e^-5	0.748	INTRON Rh50
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	8.368e^-5	0.748	INTRON nwk
X	12966164	X_12966164_DEL [dm3] X_13072131_DEL [dm6]	TT	T	8.374e^-5	0.748	INTRON rad
2L	12201547	2L_12201547_SNP [dm3] 2L_12201547_SNP [dm6]	G	A	8.376e^-5	0.748	UTR_5_PRIME aret INTRON aret
3L	11343019	3L_11343019_SNP [dm3] 3L_11349919_SNP [dm6]	T	C	8.376e^-5	0.748	UPSTREAM CR45251 INTERGENIC
2L	22076849	2L_22076849_INS [dm3] 2L_22076849_INS [dm6]	A	ACATAGCATATATAGTA...	8.382e^-5	0.748	INTERGENIC	transposable element FlyBase
2L	527054	2L_527054_SNP [dm3] 2L_527054_SNP [dm6]	G	T	8.389e^-5	0.748	INTRON ush	regulatory region REDfly_CRMs
3R	21442930	3R_21442930_SNP [dm3] 3R_25617208_SNP [dm6]	G	A	8.426e^-5	0.748	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	11344312	3L_11344312_SNP [dm3] 3L_11351212_SNP [dm6]	G	A	8.438e^-5	0.748	INTERGENIC
3L	22556655	3L_22556655_SNP [dm3] 3L_22563555_SNP [dm6]	C	T	8.532e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11808117	3L_11808117_SNP [dm3] 3L_11815017_SNP [dm6]	G	T	8.575e^-5	0.748	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10049826	3L_10049826_SNP [dm3] 3L_10056726_SNP [dm6]	A	G	8.663e^-5	0.748	INTRON dpr6
2L	10639541	2L_10639541_SNP [dm3] 2L_10639541_SNP [dm6]	C	T	8.666e^-5	0.748	UPSTREAM CG31872 EXON CR45351
2L	14599514	2L_14599514_SNP [dm3] 2L_14599514_SNP [dm6]	T	C	8.669e^-5	0.748	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc & 1 other DOWNSTREAM osp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5334800	3L_5334800_SNP [dm3] 3L_5341700_SNP [dm6]	C	T	8.677e^-5	0.748	UPSTREAM tRNA:S7:64D INTERGENIC
3R	22558397	3R_22558397_SNP [dm3] 3R_26732675_SNP [dm6]	C	T	8.688e^-5	0.748	INTERGENIC
2R	1936695	2R_1936695_SNP [dm3] 2R_6049190_SNP [dm6]	A	T	8.700e^-5	0.748	DOWNSTREAM CG34212 INTERGENIC
2L	19395134	2L_19395134_SNP [dm3] 2L_19395134_SNP [dm6]	T	C	8.761e^-5	0.748	SYNONYMOUS_CODING CG31798 INTRON CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16722420	X_16722420_SNP [dm3] X_16828387_SNP [dm6]	C	T	8.776e^-5	0.748	UPSTREAM CG13004 INTRON CG13004
2R	8176319	2R_8176319_INS [dm3] 2R_12288814_INS [dm6]	A	ATA	8.842e^-5	0.748	INTRON CG42700
3L	7316418	3L_7316418_SNP [dm3] 3L_7323318_SNP [dm6]	T	C	8.850e^-5	0.748	UTR_5_PRIME RhoGEF4 UPSTREAM Rint1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	14712877	2R_14712877_SNP [dm3] 2R_18825372_SNP [dm6]	A	C	8.899e^-5	0.748	INTRON CG15097
3L	2184100	3L_2184100_SNP [dm3] 3L_2184100_SNP [dm6]	T	C	8.975e^-5	0.748	INTERGENIC
2L	3669147	2L_3669147_SNP [dm3] 2L_3669147_SNP [dm6]	C	A	8.978e^-5	0.748	UPSTREAM Sfp24Ba & 1 other DOWNSTREAM Sfp24Bb & 1 other INTRON CG34340
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	8.979e^-5	0.748	INTRON nwk
2L	4454932	2L_4454932_SNP [dm3] 2L_4454932_SNP [dm6]	C	A	8.993e^-5	0.748	NON_SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5529933	2L_5529933_SNP [dm3] 2L_5529933_SNP [dm6]	T	C	9.022e^-5	0.748	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG7277 INTRON Cap-D3
2L	14692111	2L_14692111_SNP [dm3] 2L_14692111_SNP [dm6]	A	G	9.089e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11212469	3L_11212469_SNP [dm3] 3L_11219369_SNP [dm6]	T	G	9.151e^-5	0.748	INTRON CG42671
3R	4759122	3R_4759122_SNP [dm3] 3R_8933400_SNP [dm6]	A	C	9.171e^-5	0.748	DOWNSTREAM CR44020 INTERGENIC
3R	23857495	3R_23857495_SNP [dm3] 3R_28031773_SNP [dm6]	T	G	9.232e^-5	0.748	INTRON CG34362
2L	6313396	2L_6313396_SNP [dm3] 2L_6313396_SNP [dm6]	G	T	9.251e^-5	0.748	INTRON Ddr
3R	15750729	3R_15750729_SNP [dm3] 3R_19925007_SNP [dm6]	G	T	9.283e^-5	0.748	INTRON CG4462
2L	2245901	2L_2245901_SNP [dm3] 2L_2245901_SNP [dm6]	A	T	9.296e^-5	0.748	DOWNSTREAM CG4267 EXON CR42859
3R	21668059	3R_21668059_SNP [dm3] 3R_25842337_SNP [dm6]	C	T	9.462e^-5	0.75	SYNONYMOUS_CODING alpha4GT2
X	8057641	X_8057641_SNP [dm3] X_8163608_SNP [dm6]	A	G	9.474e^-5	0.75	UPSTREAM CG10761 DOWNSTREAM Or7a & 1 other INTERGENIC
3R	14029203	3R_14029203_SNP [dm3] 3R_18203481_SNP [dm6]	C	G	9.501e^-5	0.75	INTRON CG7985
2R	12313553	2R_12313553_SNP [dm3] 2R_16426048_SNP [dm6]	C	T	9.515e^-5	0.75	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14683331	2L_14683331_SNP [dm3] 2L_14683331_SNP [dm6]	C	G	9.518e^-5	0.75	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18025315	3R_18025315_SNP [dm3] 3R_22199593_SNP [dm6]	C	A	9.559e^-5	0.75	INTRON SKIP & 1 other
2L	92093	2L_92093_SNP [dm3] 2L_92093_SNP [dm6]	T	A	9.659e^-5	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	14598674	2L_14598674_SNP [dm3] 2L_14598674_SNP [dm6]	G	A	9.730e^-5	0.754	UPSTREAM tRNA:P:35Ba & 1 other DOWNSTREAM osp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18198297	3L_18198297_SNP [dm3] 3L_18205197_SNP [dm6]	C	G	9.836e^-5	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23132414	3R_23132414_SNP [dm3] 3R_27306692_SNP [dm6]	T	C	9.876e^-5	0.754	INTRON CG3339
2L	14598990	2L_14598990_SNP [dm3] 2L_14598990_SNP [dm6]	A	G	9.885e^-5	0.754	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12526773	2L_12526773_INS [dm3] 2L_12526773_INS [dm6]	T	TAATACATTAGGGATATGTA...	9.995e^-5	0.754	INTRON bun
2L	14714307	2L_14714307_SNP [dm3] 2L_14714307_SNP [dm6]	G	A	1.002e^-4	0.754	UTR_3_PRIME CG34165
2L	2229596	2L_2229596_SNP [dm3] 2L_2229596_SNP [dm6]	C	T	1.006e^-4	0.754	INTRON rti	TF binding site mE1_TFBS_HSA
3L	12470083	3L_12470083_SNP [dm3] 3L_12476983_SNP [dm6]	C	T	1.007e^-4	0.754	SYNONYMOUS_CODING CG10663
3R	4755002	3R_4755002_SNP [dm3] 3R_8929280_SNP [dm6]	C	T	1.007e^-4	0.754	INTRON pyd	TF binding site BDTNP1_TFBS_dl
2R	5564153	2R_5564153_DEL [dm3] 2R_9676648_DEL [dm6]	CAGCGCTGGA	C	1.010e^-4	0.754	INTRON Mmp2	TF binding site BDTNP1_TFBS_dl
3R	10226008	3R_10226008_SNP [dm3] 3R_14400286_SNP [dm6]	A	G	1.013e^-4	0.754	INTRON cv-c	TF binding site mE1_TFBS_Trl
2R	16847806	2R_16847806_SNP [dm3] 2R_20960301_SNP [dm6]	T	C	1.018e^-4	0.754	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19305446	2R_19305446_SNP [dm3] 2R_23417923_SNP [dm6]	A	T	1.026e^-4	0.754	DOWNSTREAM CG30411 INTRON CG9812
2R	18151215	2R_18151215_SNP [dm3] 2R_22263710_SNP [dm6]	A	T	1.026e^-4	0.754	INTRON dve
3L	16744302	3L_16744302_SNP [dm3] 3L_16751202_SNP [dm6]	A	T	1.031e^-4	0.754	INTERGENIC
X	11570221	X_11570221_SNP [dm3] X_11676188_SNP [dm6]	A	T	1.037e^-4	0.754	UTR_3_PRIME Ptp10D	TF binding site mE1_TFBS_kn
3R	14419786	3R_14419786_SNP [dm3] 3R_18594064_SNP [dm6]	A	G	1.038e^-4	0.754	INTRON qin & 1 other
3R	21027333	3R_21027333_SNP [dm3] 3R_25201611_SNP [dm6]	G	A	1.044e^-4	0.754	SYNONYMOUS_CODING Cad96Ca INTRON CG13654
2L	9155630	2L_9155630_SNP [dm3] 2L_9155630_SNP [dm6]	G	T	1.047e^-4	0.754	INTRON CG32982
2R	11703023	2R_11703023_SNP [dm3] 2R_15815518_SNP [dm6]	G	T	1.049e^-4	0.754	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4755617	3R_4755617_SNP [dm3] 3R_8929895_SNP [dm6]	C	A	1.049e^-4	0.754	INTRON pyd
2L	6313397	2L_6313397_SNP [dm3] 2L_6313397_SNP [dm6]	C	A	1.063e^-4	0.757	INTRON Ddr
3L	14350320	3L_14350320_SNP [dm3] 3L_14357220_SNP [dm6]	A	G	1.065e^-4	0.757	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	2790444	3R_2790444_SNP [dm3] 3R_6964722_SNP [dm6]	T	A	1.068e^-4	0.757	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12897882	2R_12897882_SNP [dm3] 2R_17010377_SNP [dm6]	C	T	1.069e^-4	0.757	SYNONYMOUS_CODING Ehbp1	TF binding site mE1_TFBS_cad
3R	10436408	3R_10436408_SNP [dm3] 3R_14610686_SNP [dm6]	C	T	1.077e^-4	0.757	INTRON CG14853
X	4665323	X_4665323_SNP [dm3] X_4771290_SNP [dm6]	C	T	1.078e^-4	0.757	SYNONYMOUS_CODING Bteb2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11618564	2R_11618564_SNP [dm3] 2R_15731059_SNP [dm6]	T	C	1.082e^-4	0.757	INTRON CG30089
3R	25775719	3R_25775719_SNP [dm3] 3R_29949997_SNP [dm6]	A	G	1.092e^-4	0.759	DOWNSTREAM TkR99D INTERGENIC
2L	6313401	2L_6313401_SNP [dm3] 2L_6313401_SNP [dm6]	G	T	1.098e^-4	0.759	INTRON Ddr
3L	5250952	3L_5250952_SNP [dm3] 3L_5257852_SNP [dm6]	T	C	1.106e^-4	0.759	INTRON shep
2R	2057051	2R_2057051_SNP [dm3] 2R_6169546_SNP [dm6]	C	T	1.110e^-4	0.759	UPSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11211403	3L_11211403_SNP [dm3] 3L_11218303_SNP [dm6]	C	A	1.110e^-4	0.759	INTRON CG42671
3R	10920068	3R_10920068_DEL [dm3] 3R_15094346_DEL [dm6]	ACTCCTC	A	1.113e^-4	0.759	INTRON CG6966	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4455085	2L_4455085_SNP [dm3] 2L_4455085_SNP [dm6]	G	A	1.114e^-4	0.759	NON_SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16941434	2R_16941434_SNP [dm3] 2R_21053929_SNP [dm6]	T	A	1.122e^-4	0.759	SYNONYMOUS_CODING shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25235116	3R_25235116_SNP [dm3] 3R_29409394_SNP [dm6]	G	A	1.132e^-4	0.759	INTRON Ptp99A
2R	7473880	2R_7473880_SNP [dm3] 2R_11586375_SNP [dm6]	T	G	1.133e^-4	0.759	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12148924	2L_12148924_SNP [dm3] 2L_12148924_SNP [dm6]	C	T	1.135e^-4	0.759	INTRON CG31760
3L	22548787	3L_22548787_SNP [dm3] 3L_22555687_SNP [dm6]	G	A	1.138e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12148885	2L_12148885_SNP [dm3] 2L_12148885_SNP [dm6]	G	A	1.149e^-4	0.759	INTRON CG31760
3R	22142683	3R_22142683_SNP [dm3] 3R_26316961_SNP [dm6]	G	C	1.150e^-4	0.759	INTERGENIC
3R	24492691	3R_24492691_INS [dm3] 3R_28666969_INS [dm6]	C	CAACTGTACC	1.151e^-4	0.759	INTERGENIC
3L	3499711	3L_3499711_DEL [dm3] 3L_3499711_DEL [dm6]	TAT	T	1.153e^-4	0.759	INTRON CG42324
X	2630293	X_2630293_SNP [dm3] X_2736260_SNP [dm6]	A	G	1.154e^-4	0.759	SYNONYMOUS_CODING crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10436402	3R_10436402_SNP [dm3] 3R_14610680_SNP [dm6]	G	A	1.165e^-4	0.759	INTRON CG14853
2R	1936694	2R_1936694_SNP [dm3] 2R_6049189_SNP [dm6]	C	G	1.167e^-4	0.759	DOWNSTREAM CG34212 INTERGENIC
3L	11214111	3L_11214111_SNP [dm3] 3L_11221011_SNP [dm6]	A	T	1.172e^-4	0.759	INTRON CG42671	TF binding site mE1_TFBS_cad
3R	13631117	3R_13631117_SNP [dm3] 3R_17805395_SNP [dm6]	T	A	1.173e^-4	0.759	UPSTREAM CG17802 DOWNSTREAM CG17801 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4755252	3R_4755252_SNP [dm3] 3R_8929530_SNP [dm6]	A	G	1.173e^-4	0.759	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3L	11341705	3L_11341705_SNP [dm3] 3L_11348605_SNP [dm6]	A	T	1.185e^-4	0.759	DOWNSTREAM CR45251 INTERGENIC
3L	11342938	3L_11342938_SNP [dm3] 3L_11349838_SNP [dm6]	T	C	1.191e^-4	0.759	UPSTREAM CR45251 INTERGENIC
X	6952504	X_6952504_SNP [dm3] X_7058471_SNP [dm6]	T	C	1.191e^-4	0.759	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5250953	3L_5250953_SNP [dm3] 3L_5257853_SNP [dm6]	T	G	1.196e^-4	0.759	INTRON shep
3L	13941037	3L_13941037_SNP [dm3] 3L_13947937_SNP [dm6]	G	T	1.197e^-4	0.759	INTRON CG32137
3R	4755380	3R_4755380_SNP [dm3] 3R_8929658_SNP [dm6]	T	G	1.200e^-4	0.759	INTRON pyd
2L	8012329	2L_8012329_SNP [dm3] 2L_8012329_SNP [dm6]	C	G	1.202e^-4	0.759	UPSTREAM Tg INTRON Tg
2R	13833391	2R_13833391_SNP [dm3] 2R_17945886_SNP [dm6]	G	T	1.213e^-4	0.759	INTERGENIC
3L	23900701	3L_23900701_SNP [dm3] 3L_23907601_SNP [dm6]	G	T	1.221e^-4	0.759	INTRON CG40470
3R	25290291	3R_25290291_SNP [dm3] 3R_29464569_SNP [dm6]	A	T	1.224e^-4	0.759	INTRON Ptp99A
3L	10235528	3L_10235528_SNP [dm3] 3L_10242428_SNP [dm6]	T	A	1.224e^-4	0.759	DOWNSTREAM CR44541 & 1 other INTERGENIC
2R	14495255	2R_14495255_SNP [dm3] 2R_18607750_SNP [dm6]	A	G	1.232e^-4	0.759	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2229601	2L_2229601_SNP [dm3] 2L_2229601_SNP [dm6]	C	A	1.234e^-4	0.759	INTRON rti	TF binding site mE1_TFBS_HSA
3L	10235566	3L_10235566_SNP [dm3] 3L_10242466_SNP [dm6]	A	C	1.236e^-4	0.759	DOWNSTREAM CR44541 & 1 other INTERGENIC
2R	15686491	2R_15686491_SNP [dm3] 2R_19798986_SNP [dm6]	A	T	1.239e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15763029	3R_15763029_SNP [dm3] 3R_19937307_SNP [dm6]	T	G	1.242e^-4	0.759	SYNONYMOUS_CODING Hs6st
3L	13946645	3L_13946645_SNP [dm3] 3L_13953545_SNP [dm6]	G	A	1.242e^-4	0.759	INTRON CG32137
3R	10206259	3R_10206259_SNP [dm3] 3R_14380537_SNP [dm6]	G	C	1.262e^-4	0.76	DOWNSTREAM soti INTERGENIC
3L	10235560	3L_10235560_SNP [dm3] 3L_10242460_SNP [dm6]	A	G	1.270e^-4	0.76	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	8216719	3L_8216719_SNP [dm3] 3L_8223619_SNP [dm6]	C	A	1.271e^-4	0.76	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9586588	3L_9586588_SNP [dm3] 3L_9593488_SNP [dm6]	C	G	1.272e^-4	0.76	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	6819546	3R_6819546_SNP [dm3] 3R_10993824_SNP [dm6]	G	A	1.274e^-4	0.76	INTRON CG34114
2L	801810	2L_801810_SNP [dm3] 2L_801810_SNP [dm6]	A	G	1.279e^-4	0.76	INTERGENIC
2R	13833371	2R_13833371_SNP [dm3] 2R_17945866_SNP [dm6]	T	C	1.289e^-4	0.76	INTERGENIC
3R	20796225	3R_20796225_SNP [dm3] 3R_24970503_SNP [dm6]	T	C	1.297e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10235553	3L_10235553_SNP [dm3] 3L_10242453_SNP [dm6]	T	A	1.300e^-4	0.76	DOWNSTREAM CR44541 & 1 other INTERGENIC
2L	3637887	2L_3637887_SNP [dm3] 2L_3637887_SNP [dm6]	A	G	1.301e^-4	0.76	UPSTREAM mir-4972 INTRON for
3R	15762984	3R_15762984_SNP [dm3] 3R_19937262_SNP [dm6]	G	A	1.307e^-4	0.76	SYNONYMOUS_CODING Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15762853	3R_15762853_SNP [dm3] 3R_19937131_SNP [dm6]	T	C	1.308e^-4	0.76	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8835215	2R_8835215_SNP [dm3] 2R_12947710_SNP [dm6]	C	T	1.308e^-4	0.76	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3165975	3R_3165975_SNP [dm3] 3R_7340253_SNP [dm6]	A	G	1.309e^-4	0.76	INTERGENIC
3L	1628027	3L_1628027_SNP [dm3] 3L_1628027_SNP [dm6]	G	A	1.311e^-4	0.76	START_GAINED CG13928 UTR_5_PRIME CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10400558	2L_10400558_SNP [dm3] 2L_10400558_SNP [dm6]	G	A	1.312e^-4	0.76	SYNONYMOUS_CODING Cnot4
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	1.312e^-4	0.76	UPSTREAM CG10597 INTERGENIC
3R	15061573	3R_15061573_SNP [dm3] 3R_19235851_SNP [dm6]	A	T	1.317e^-4	0.76	INTRON unc79
2R	12313526	2R_12313526_SNP [dm3] 2R_16426021_SNP [dm6]	T	A	1.331e^-4	0.763	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14684252	2L_14684252_SNP [dm3] 2L_14684252_SNP [dm6]	C	T	1.331e^-4	0.763	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	21030829	3R_21030829_SNP [dm3] 3R_25205107_SNP [dm6]	T	A	1.338e^-4	0.764	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	4755291	3R_4755291_SNP [dm3] 3R_8929569_SNP [dm6]	T	C	1.351e^-4	0.764	INTRON pyd
3R	25323368	3R_25323368_SNP [dm3] 3R_29497646_SNP [dm6]	C	T	1.353e^-4	0.764	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14401999	2L_14401999_SNP [dm3] 2L_14401999_SNP [dm6]	G	A	1.355e^-4	0.764	INTRON elB
2R	11400756	2R_11400756_SNP [dm3] 2R_15513251_SNP [dm6]	A	T	1.365e^-4	0.764	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
3R	25664327	3R_25664327_SNP [dm3] 3R_29838605_SNP [dm6]	A	G	1.366e^-4	0.764	INTERGENIC
3L	11407807	3L_11407807_SNP [dm3] 3L_11414707_SNP [dm6]	T	A	1.368e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8283458	2L_8283458_SNP [dm3] 2L_8283458_SNP [dm6]	T	G	1.382e^-4	0.764	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3R	4755391	3R_4755391_SNP [dm3] 3R_8929669_SNP [dm6]	A	G	1.382e^-4	0.764	INTRON pyd
2R	14662987	2R_14662987_SNP [dm3] 2R_18775482_SNP [dm6]	G	C	1.383e^-4	0.764	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
3L	7602854	3L_7602854_SNP [dm3] 3L_7609754_SNP [dm6]	C	T	1.385e^-4	0.764	INTRON CG33275
2L	14684249	2L_14684249_SNP [dm3] 2L_14684249_SNP [dm6]	T	G	1.390e^-4	0.764	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8498024	2R_8498024_SNP [dm3] 2R_12610519_SNP [dm6]	T	G	1.392e^-4	0.764	INTRON Amph	TF binding site mE1_TFBS_HSA
2L	12201550	2L_12201550_SNP [dm3] 2L_12201550_SNP [dm6]	C	A	1.408e^-4	0.764	UTR_5_PRIME aret INTRON aret
3R	14419696	3R_14419696_SNP [dm3] 3R_18593974_SNP [dm6]	A	G	1.412e^-4	0.764	SYNONYMOUS_CODING CG14304 INTRON qin
3R	26319060	3R_26319060_SNP [dm3] 3R_30493338_SNP [dm6]	G	A	1.412e^-4	0.764	INTRON PH4alphaMP	TF binding site mE1_TFBS_cad
2L	12136400	2L_12136400_SNP [dm3] 2L_12136400_SNP [dm6]	C	A	1.414e^-4	0.764	INTERGENIC
2L	1606423	2L_1606423_SNP [dm3] 2L_1606423_SNP [dm6]	C	T	1.417e^-4	0.764	SYNONYMOUS_CODING haf INTRON CG31935
3L	12839968	3L_12839968_SNP [dm3] 3L_12846868_SNP [dm6]	A	C	1.420e^-4	0.764	INTRON CG10948	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	25466475	3R_25466475_SNP [dm3] 3R_29640753_SNP [dm6]	G	A	1.422e^-4	0.764	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
3L	10235628	3L_10235628_SNP [dm3] 3L_10242528_SNP [dm6]	T	G	1.428e^-4	0.764	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	4751784	3R_4751784_SNP [dm3] 3R_8926062_SNP [dm6]	A	C	1.435e^-4	0.764	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9883998	2L_9883998_SNP [dm3] 2L_9883998_SNP [dm6]	T	A	1.441e^-4	0.764	INTRON nAChRalpha6
2L	2243722	2L_2243722_SNP [dm3] 2L_2243722_SNP [dm6]	A	G	1.442e^-4	0.764	SYNONYMOUS_CODING CG4267
3L	24067654	3L_24067654_SNP [dm3] 3L_24074554_SNP [dm6]	C	T	1.452e^-4	0.764	INTRON Snap25	TF binding site mE1_TFBS_zfh1
2L	10750298	2L_10750298_SNP [dm3] 2L_10750298_SNP [dm6]	C	G	1.452e^-4	0.764	INTRON CG17124
2L	5882326	2L_5882326_SNP [dm3] 2L_5882326_SNP [dm6]	G	T	1.453e^-4	0.764	INTERGENIC	regulatory region REDfly_CRMs
2L	15900233	2L_15900233_SNP [dm3] 2L_15900233_SNP [dm6]	G	A	1.463e^-4	0.764	DOWNSTREAM CG31821 INTRON CG31823
2L	9155628	2L_9155628_SNP [dm3] 2L_9155628_SNP [dm6]	T	A	1.467e^-4	0.764	INTRON CG32982
2R	8835221	2R_8835221_SNP [dm3] 2R_12947716_SNP [dm6]	G	T	1.474e^-4	0.764	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11407813	3L_11407813_SNP [dm3] 3L_11414713_SNP [dm6]	A	T	1.482e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12136429	2L_12136429_SNP [dm3] 2L_12136429_SNP [dm6]	C	T	1.483e^-4	0.764	INTERGENIC
3L	1818872	3L_1818872_SNP [dm3] 3L_1818872_SNP [dm6]	T	G	1.484e^-4	0.764	INTRON GV1
2R	11339866	2R_11339866_SNP [dm3] 2R_15452361_SNP [dm6]	C	A	1.487e^-4	0.764	INTRON CG43729
3L	1172678	3L_1172678_SNP [dm3] 3L_1172678_SNP [dm6]	C	G	1.489e^-4	0.764	INTRON bab2	regulatory region REDfly_CRMs
2L	14684319	2L_14684319_SNP [dm3] 2L_14684319_SNP [dm6]	T	C	1.492e^-4	0.764	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23612173	3R_23612173_SNP [dm3] 3R_27786451_SNP [dm6]	G	T	1.498e^-4	0.764	INTRON CG34353
2L	8283425	2L_8283425_SNP [dm3] 2L_8283425_SNP [dm6]	C	T	1.499e^-4	0.764	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
X	5500935	X_5500935_SNP [dm3] X_5606902_SNP [dm6]	G	C	1.503e^-4	0.764	INTRON Vsx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6952534	X_6952534_DEL [dm3] X_7058501_DEL [dm6]	AAA	T	1.505e^-4	0.764	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6952545	X_6952545_SNP [dm3] X_7058512_SNP [dm6]	T	G	1.505e^-4	0.764	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9883993	2L_9883993_SNP [dm3] 2L_9883993_SNP [dm6]	T	G	1.507e^-4	0.764	INTRON nAChRalpha6
X	20359014	X_20359014_DEL [dm3] X_20487987_DEL [dm6]	AG	A	1.509e^-4	0.764	INTRON RhoGAP19D
3L	12842741	3L_12842741_SNP [dm3] 3L_12849641_SNP [dm6]	T	C	1.514e^-4	0.764	NON_SYNONYMOUS_CODING CG10948 UPSTREAM Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19566800	3R_19566800_SNP [dm3] 3R_23741078_SNP [dm6]	T	C	1.517e^-4	0.764	INTRON Hmgcr
2L	14684221	2L_14684221_SNP [dm3] 2L_14684221_SNP [dm6]	A	T	1.524e^-4	0.764	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11213216	3L_11213216_SNP [dm3] 3L_11220116_SNP [dm6]	A	T	1.529e^-4	0.764	INTRON CG42671
2R	16847877	2R_16847877_SNP [dm3] 2R_20960372_SNP [dm6]	C	T	1.531e^-4	0.764	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12026440	2L_12026440_SNP [dm3] 2L_12026440_SNP [dm6]	G	C	1.532e^-4	0.764	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12163719	X_12163719_SNP [dm3] X_12269686_SNP [dm6]	C	T	1.548e^-4	0.765	INTRON Ten-a
2L	4454065	2L_4454065_SNP [dm3] 2L_4454065_SNP [dm6]	A	G	1.549e^-4	0.765	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10000478	3L_10000478_SNP [dm3] 3L_10007378_SNP [dm6]	T	C	1.556e^-4	0.765	INTRON dpr6
2L	12201559	2L_12201559_SNP [dm3] 2L_12201559_SNP [dm6]	A	G	1.559e^-4	0.765	UTR_5_PRIME aret INTRON aret
2R	18158897	2R_18158897_INS [dm3] 2R_22271392_INS [dm6]	C	CG	1.561e^-4	0.765	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10000475	3L_10000475_SNP [dm3] 3L_10007375_SNP [dm6]	A	T	1.565e^-4	0.765	INTRON dpr6
3R	25575947	3R_25575947_SNP [dm3] 3R_29750225_SNP [dm6]	C	T	1.570e^-4	0.765	SPLICE_SITE_REGION yata INTRON yata	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3711173	3L_3711173_MNP [dm3] 3L_3711173_MNP [dm6]	GCAG	TTGC	1.574e^-4	0.765	INTERGENIC
3L	3711178	3L_3711178_SNP [dm3] 3L_3711178_SNP [dm6]	G	C	1.574e^-4	0.765	INTERGENIC
3L	3711180	3L_3711180_MNP [dm3] 3L_3711180_MNP [dm6]	CACAAAAA	TTTTTGTG	1.574e^-4	0.765	INTERGENIC
2L	7661378	2L_7661378_SNP [dm3] 2L_7661378_SNP [dm6]	G	T	1.579e^-4	0.765	INTRON Slob
3R	18728752	3R_18728752_SNP [dm3] 3R_22903030_SNP [dm6]	G	A	1.588e^-4	0.768	INTRON klg
X	5513391	X_5513391_DEL [dm3] X_5619358_DEL [dm6]	CTTCC	C	1.594e^-4	0.768	UTR_3_PRIME Mlc-c UPSTREAM RhoGAP5A
3L	10235535	3L_10235535_SNP [dm3] 3L_10242435_SNP [dm6]	G	C	1.597e^-4	0.768	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	7316297	3L_7316297_SNP [dm3] 3L_7323197_SNP [dm6]	A	G	1.600e^-4	0.768	SYNONYMOUS_CODING RhoGEF4 UPSTREAM Rint1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	14684240	2L_14684240_SNP [dm3] 2L_14684240_SNP [dm6]	A	G	1.609e^-4	0.77	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26484162	3R_26484162_SNP [dm3] 3R_30658440_SNP [dm6]	A	C	1.618e^-4	0.771	INTERGENIC
3L	1256636	3L_1256636_SNP [dm3] 3L_1256636_SNP [dm6]	G	A	1.620e^-4	0.771	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3R	13672874	3R_13672874_SNP [dm3] 3R_17847152_SNP [dm6]	G	C	1.631e^-4	0.772	INTRON tinc
3L	15918281	3L_15918281_SNP [dm3] 3L_15925181_SNP [dm6]	A	C	1.631e^-4	0.772	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18840776	3R_18840776_SNP [dm3] 3R_23015054_SNP [dm6]	T	C	1.640e^-4	0.774	NON_SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
2R	18693157	2R_18693157_SNP [dm3] 2R_22805652_SNP [dm6]	T	C	1.641e^-4	0.774	INTRON CycB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4455027	2L_4455027_SNP [dm3] 2L_4455027_SNP [dm6]	T	A	1.652e^-4	0.775	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1039999	2L_1039999_SNP [dm3] 2L_1039999_SNP [dm6]	A	G	1.653e^-4	0.775	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	9155986	2L_9155986_SNP [dm3] 2L_9155986_SNP [dm6]	C	T	1.663e^-4	0.776	INTRON CG32982
3R	25228969	3R_25228969_SNP [dm3] 3R_29403247_SNP [dm6]	A	G	1.665e^-4	0.776	INTRON Ptp99A
2R	13833357	2R_13833357_SNP [dm3] 2R_17945852_SNP [dm6]	A	G	1.671e^-4	0.776	INTERGENIC
2L	12136407	2L_12136407_SNP [dm3] 2L_12136407_SNP [dm6]	C	A	1.683e^-4	0.776	INTERGENIC
X	8171253	X_8171253_SNP [dm3] X_8277220_SNP [dm6]	G	T	1.689e^-4	0.776	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636
2L	10618348	2L_10618348_SNP [dm3] 2L_10618348_SNP [dm6]	G	A	1.695e^-4	0.776	INTRON Trim9
2L	13462510	2L_13462510_SNP [dm3] 2L_13462510_SNP [dm6]	T	A	1.699e^-4	0.776	INTRON CG42784	TF binding site mE1_TFBS_inv
3R	16226254	3R_16226254_SNP [dm3] 3R_20400532_SNP [dm6]	T	G	1.700e^-4	0.776	UTR_3_PRIME Gfrl INTRON Gfrl
3L	10215594	3L_10215594_SNP [dm3] 3L_10222494_SNP [dm6]	C	T	1.700e^-4	0.776	INTRON scramb1
2L	14684219	2L_14684219_SNP [dm3] 2L_14684219_SNP [dm6]	A	C	1.703e^-4	0.776	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12766779	2R_12766779_DEL [dm3] 2R_16879274_DEL [dm6]	CATGGCT	G	1.706e^-4	0.776	INTRON CG8910
3R	4755198	3R_4755198_SNP [dm3] 3R_8929476_SNP [dm6]	T	G	1.710e^-4	0.776	INTRON pyd	TF binding site BDTNP1_TFBS_dl
2L	801809	2L_801809_SNP [dm3] 2L_801809_SNP [dm6]	C	T	1.712e^-4	0.776	INTERGENIC
3L	10235540	3L_10235540_SNP [dm3] 3L_10242440_SNP [dm6]	C	A	1.718e^-4	0.776	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	17591404	3L_17591404_SNP [dm3] 3L_17598304_SNP [dm6]	C	A	1.718e^-4	0.776	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad
3L	2614760	3L_2614760_SNP [dm3] 3L_2614760_SNP [dm6]	T	C	1.724e^-4	0.777	INTRON Pxn
2L	14684332	2L_14684332_SNP [dm3] 2L_14684332_SNP [dm6]	C	T	1.729e^-4	0.777	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16847784	2R_16847784_SNP [dm3] 2R_20960279_SNP [dm6]	A	G	1.732e^-4	0.777	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1753394	3L_1753394_DEL [dm3] 3L_1753394_DEL [dm6]	GTATCGGG	G	1.741e^-4	0.778	INTRON Cht2	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14242149	3L_14242149_SNP [dm3] 3L_14249049_SNP [dm6]	T	G	1.752e^-4	0.778	INTERGENIC
2L	14599393	2L_14599393_SNP [dm3] 2L_14599393_SNP [dm6]	C	T	1.753e^-4	0.778	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23007522	3R_23007522_SNP [dm3] 3R_27181800_SNP [dm6]	T	G	1.759e^-4	0.778	INTRON Ser
2R	10343032	2R_10343032_SNP [dm3] 2R_14455527_SNP [dm6]	G	T	1.770e^-4	0.778	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12475683	3L_12475683_SNP [dm3] 3L_12482583_SNP [dm6]	C	T	1.788e^-4	0.778	UPSTREAM CG33725 INTRON CG10663
2R	6723623	2R_6723623_SNP [dm3] 2R_10836118_SNP [dm6]	T	G	1.790e^-4	0.778	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
3R	9539950	3R_9539950_SNP [dm3] 3R_13714228_SNP [dm6]	A	G	1.809e^-4	0.778	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	14706910	2R_14706910_SNP [dm3] 2R_18819405_SNP [dm6]	A	G	1.809e^-4	0.778	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5207428	3R_5207428_SNP [dm3] 3R_9381706_SNP [dm6]	T	C	1.810e^-4	0.778	INTRON FER
3R	15402566	3R_15402566_SNP [dm3] 3R_19576844_SNP [dm6]	T	C	1.814e^-4	0.778	INTRON Dys
3R	25238138	3R_25238138_SNP [dm3] 3R_29412416_SNP [dm6]	T	C	1.822e^-4	0.778	INTRON Ptp99A
3R	17335720	3R_17335720_SNP [dm3] 3R_21509998_SNP [dm6]	T	G	1.823e^-4	0.778	INTRON C15	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11214218	3L_11214218_DEL [dm3] 3L_11221118_DEL [dm6]	ATA	A	1.824e^-4	0.778	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	19672392	2R_19672392_SNP [dm3] 2R_23784869_SNP [dm6]	C	T	1.825e^-4	0.778	INTRON CG9850
2L	14684335	2L_14684335_SNP [dm3] 2L_14684335_SNP [dm6]	G	A	1.825e^-4	0.778	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684329	2L_14684329_SNP [dm3] 2L_14684329_SNP [dm6]	T	A	1.825e^-4	0.778	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15399395	3R_15399395_SNP [dm3] 3R_19573673_SNP [dm6]	C	T	1.829e^-4	0.778	INTRON Dys
3R	25158670	3R_25158670_SNP [dm3] 3R_29332948_SNP [dm6]	A	G	1.831e^-4	0.778	INTERGENIC
2L	15900325	2L_15900325_INS [dm3] 2L_15900325_INS [dm6]	C	CC	1.833e^-4	0.778	DOWNSTREAM CG31821 INTRON CG31823
3L	9113407	3L_9113407_SNP [dm3] 3L_9120307_SNP [dm6]	A	T	1.834e^-4	0.778	INTRON bol
2R	15346889	2R_15346889_SNP [dm3] 2R_19459384_SNP [dm6]	A	G	1.839e^-4	0.778	UTR_3_PRIME mei-W68 INTRON par-1
3L	5091719	3L_5091719_SNP [dm3] 3L_5091719_SNP [dm6]	G	C	1.848e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25520554	3R_25520554_DEL [dm3] 3R_29694832_DEL [dm6]	TAAGGTAACCCCAT...	T	1.852e^-4	0.778	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	17339970	3R_17339970_SNP [dm3] 3R_21514248_SNP [dm6]	C	T	1.855e^-4	0.778	INTERGENIC
3L	528874	3L_528874_SNP [dm3] 3L_528874_SNP [dm6]	T	C	1.856e^-4	0.778	SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45117 INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14546977	3R_14546977_DEL [dm3] 3R_18721255_DEL [dm6]	AAG	T	1.859e^-4	0.778	DOWNSTREAM CG34283 INTRON Cha
3R	18589869	3R_18589869_SNP [dm3] 3R_22764147_SNP [dm6]	C	T	1.860e^-4	0.778	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
2R	14663051	2R_14663051_SNP [dm3] 2R_18775546_SNP [dm6]	T	A	1.868e^-4	0.778	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
3L	10214667	3L_10214667_SNP [dm3] 3L_10221567_SNP [dm6]	A	G	1.869e^-4	0.778	INTRON scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16195128	3R_16195128_SNP [dm3] 3R_20369406_SNP [dm6]	G	A	1.876e^-4	0.778	INTERGENIC
2R	6723615	2R_6723615_SNP [dm3] 2R_10836110_SNP [dm6]	C	G	1.877e^-4	0.778	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
3R	26484134	3R_26484134_SNP [dm3] 3R_30658412_SNP [dm6]	G	A	1.880e^-4	0.778	INTERGENIC
3L	3711170	3L_3711170_SNP [dm3] 3L_3711170_SNP [dm6]	G	C	1.884e^-4	0.778	INTERGENIC
3R	18840701	3R_18840701_SNP [dm3] 3R_23014979_SNP [dm6]	T	C	1.886e^-4	0.778	SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
2L	12136405	2L_12136405_SNP [dm3] 2L_12136405_SNP [dm6]	G	T	1.894e^-4	0.778	INTERGENIC
2L	17670250	2L_17670250_SNP [dm3] 2L_17670250_SNP [dm6]	A	C	1.895e^-4	0.778	INTRON CadN
3L	10214426	3L_10214426_SNP [dm3] 3L_10221326_SNP [dm6]	T	A	1.896e^-4	0.778	INTRON scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17340454	3R_17340454_SNP [dm3] 3R_21514732_SNP [dm6]	A	G	1.905e^-4	0.778	INTERGENIC
2L	12236001	2L_12236001_SNP [dm3] 2L_12236001_SNP [dm6]	G	T	1.909e^-4	0.778	INTRON aret
3L	10235492	3L_10235492_SNP [dm3] 3L_10242392_SNP [dm6]	A	T	1.916e^-4	0.778	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	19208031	3R_19208031_SNP [dm3] 3R_23382309_SNP [dm6]	T	G	1.918e^-4	0.778	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15278014	3R_15278014_SNP [dm3] 3R_19452292_SNP [dm6]	G	T	1.926e^-4	0.778	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	25847004	3R_25847004_SNP [dm3] 3R_30021282_SNP [dm6]	T	G	1.927e^-4	0.778	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
X	19050399	X_19050399_SNP [dm3] X_19156366_SNP [dm6]	T	A	1.931e^-4	0.778	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19667373	X_19667373_SNP [dm3] X_19773340_SNP [dm6]	A	G	1.935e^-4	0.778	INTRON vfl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11618538	2R_11618538_SNP [dm3] 2R_15731033_SNP [dm6]	A	T	1.936e^-4	0.778	INTRON CG30089	TF binding site mE1_TFBS_HSA
3R	5427933	3R_5427933_SNP [dm3] 3R_9602211_SNP [dm6]	G	C	1.941e^-4	0.778	INTRON CG8312	TF binding site BDTNP1_TFBS_twi
2R	6751647	2R_6751647_SNP [dm3] 2R_10864142_SNP [dm6]	G	C	1.943e^-4	0.778	INTRON CG30015
3R	13197468	3R_13197468_SNP [dm3] 3R_17371746_SNP [dm6]	T	C	1.946e^-4	0.778	EXON CR44256
2R	11618546	2R_11618546_SNP [dm3] 2R_15731041_SNP [dm6]	G	A	1.947e^-4	0.778	INTRON CG30089	TF binding site mE1_TFBS_HSA
2L	10703440	2L_10703440_DEL [dm3] 2L_10703440_DEL [dm6]	ACTCA	A	1.961e^-4	0.781	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	24073106	3L_24073106_SNP [dm3] 3L_24080006_SNP [dm6]	C	G	1.961e^-4	0.781	INTRON Snap25
2L	16577412	2L_16577412_SNP [dm3] 2L_16577412_SNP [dm6]	C	T	1.973e^-4	0.784	INTRON CG42389
3R	26484129	3R_26484129_SNP [dm3] 3R_30658407_SNP [dm6]	A	G	1.987e^-4	0.787	INTERGENIC
2L	171376	2L_171376_SNP [dm3] 2L_171376_SNP [dm6]	A	G	1.989e^-4	0.787	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11703015	2R_11703015_SNP [dm3] 2R_15815510_SNP [dm6]	T	A	1.993e^-4	0.787	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11223114	3L_11223114_SNP [dm3] 3L_11230014_SNP [dm6]	T	C	2.005e^-4	0.79	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
3R	24703089	3R_24703089_SNP [dm3] 3R_28877367_SNP [dm6]	A	G	2.012e^-4	0.791	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14523 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3711191	3L_3711191_MNP [dm3] 3L_3711191_MNP [dm6]	GCAA	CTGC	2.028e^-4	0.796	INTERGENIC
3L	1753419	3L_1753419_SNP [dm3] 3L_1753419_SNP [dm6]	G	C	2.035e^-4	0.797	INTRON Cht2	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18191715	3L_18191715_SNP [dm3] 3L_18198615_SNP [dm6]	G	T	2.040e^-4	0.797	INTERGENIC
3L	10215329	3L_10215329_SNP [dm3] 3L_10222229_SNP [dm6]	A	G	2.061e^-4	0.803	INTRON scramb1
2L	9155257	2L_9155257_SNP [dm3] 2L_9155257_SNP [dm6]	T	A	2.067e^-4	0.803	INTRON CG32982
2L	9540281	2L_9540281_SNP [dm3] 2L_9540281_SNP [dm6]	C	T	2.068e^-4	0.803	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	6952496	X_6952496_SNP [dm3] X_7058463_SNP [dm6]	T	A	2.074e^-4	0.803	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15278013	3R_15278013_SNP [dm3] 3R_19452291_SNP [dm6]	G	A	2.082e^-4	0.803	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	25025508	3R_25025508_SNP [dm3] 3R_29199786_SNP [dm6]	G	A	2.087e^-4	0.803	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13798202	3R_13798202_SNP [dm3] 3R_17972480_SNP [dm6]	A	G	2.097e^-4	0.803	INTRON cpo
X	5815512	X_5815512_SNP [dm3] X_5921479_SNP [dm6]	T	A	2.098e^-4	0.803	INTRON CG3726
2L	10709094	2L_10709094_SNP [dm3] 2L_10709094_SNP [dm6]	G	C	2.098e^-4	0.803	UTR_5_PRIME Lip2
3R	17340460	3R_17340460_INS [dm3] 3R_21514738_INS [dm6]	G	GG	2.104e^-4	0.803	INTERGENIC
X	12579839	X_12579839_SNP [dm3] X_12685806_SNP [dm6]	T	A	2.110e^-4	0.803	UTR_3_PRIME Smr DOWNSTREAM Smr
3L	12522437	3L_12522437_SNP [dm3] 3L_12529337_SNP [dm6]	T	G	2.110e^-4	0.803	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14458805	2R_14458805_SNP [dm3] 2R_18571300_SNP [dm6]	G	T	2.112e^-4	0.803	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12526762	2L_12526762_SNP [dm3] 2L_12526762_SNP [dm6]	A	T	2.126e^-4	0.806	INTRON bun
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	2.128e^-4	0.806	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	15462384	3R_15462384_SNP [dm3] 3R_19636662_SNP [dm6]	A	T	2.135e^-4	0.807	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3R	26319096	3R_26319096_SNP [dm3] 3R_30493374_SNP [dm6]	G	A	2.147e^-4	0.81	INTRON PH4alphaMP	TF binding site mE1_TFBS_cad
2L	17495085	2L_17495085_SNP [dm3] 2L_17495085_SNP [dm6]	A	G	2.158e^-4	0.813	INTRON qua
2R	19616449	2R_19616449_SNP [dm3] 2R_23728926_SNP [dm6]	G	T	2.171e^-4	0.814	INTRON Sesn
2R	15074769	2R_15074769_SNP [dm3] 2R_19187264_SNP [dm6]	T	C	2.175e^-4	0.814	INTRON hppy
2L	15900223	2L_15900223_SNP [dm3] 2L_15900223_SNP [dm6]	G	C	2.187e^-4	0.814	DOWNSTREAM CG31821 INTRON CG31823
2R	11618521	2R_11618521_SNP [dm3] 2R_15731016_SNP [dm6]	A	T	2.188e^-4	0.814	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	2.205e^-4	0.814	INTRON nwk
3R	4742266	3R_4742266_SNP [dm3] 3R_8916544_SNP [dm6]	A	T	2.210e^-4	0.814	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	173413	2L_173413_SNP [dm3] 2L_173413_SNP [dm6]	T	A	2.212e^-4	0.814	INTRON spen	TF binding site BDTNP1_TFBS_da
2R	15060067	2R_15060067_SNP [dm3] 2R_19172562_SNP [dm6]	A	G	2.222e^-4	0.814	INTRON CG10737
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	2.226e^-4	0.814	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14241536	3L_14241536_SNP [dm3] 3L_14248436_SNP [dm6]	A	G	2.229e^-4	0.814	INTERGENIC
2R	18490195	2R_18490195_SNP [dm3] 2R_22602690_SNP [dm6]	A	G	2.252e^-4	0.814	INTRON CG4294
2L	7717558	2L_7717558_SNP [dm3] 2L_7717558_SNP [dm6]	C	T	2.254e^-4	0.814	NON_SYNONYMOUS_CODING CG13793 UPSTREAM CG33296
2L	18538126	2L_18538126_SNP [dm3] 2L_18538126_SNP [dm6]	A	G	2.255e^-4	0.814	SYNONYMOUS_CODING Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11214268	3L_11214268_SNP [dm3] 3L_11221168_SNP [dm6]	T	A	2.258e^-4	0.814	INTRON CG42671	TF binding site mE1_TFBS_cad
3R	13183427	3R_13183427_DEL [dm3] 3R_17357705_DEL [dm6]	GT	G	2.258e^-4	0.814	INTRON beat-IIa
3R	25023577	3R_25023577_SNP [dm3] 3R_29197855_SNP [dm6]	C	T	2.263e^-4	0.814	SYNONYMOUS_CODING CG14515	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16366622	2L_16366622_SNP [dm3] 2L_16366622_SNP [dm6]	T	C	2.270e^-4	0.814	INTRON jhamt
X	5500968	X_5500968_SNP [dm3] X_5606935_SNP [dm6]	C	A	2.271e^-4	0.814	INTRON Vsx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15946801	3R_15946801_SNP [dm3] 3R_20121079_SNP [dm6]	A	G	2.284e^-4	0.814	NON_SYNONYMOUS_CODING Gr92a
2L	6313389	2L_6313389_SNP [dm3] 2L_6313389_SNP [dm6]	C	G	2.284e^-4	0.814	INTRON Ddr
3R	24685439	3R_24685439_SNP [dm3] 3R_28859717_SNP [dm6]	G	A	2.294e^-4	0.814	UPSTREAM Inx3 INTRON spg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18134111	2R_18134111_DEL [dm3] 2R_22246606_DEL [dm6]	GGATGGGCGGGG...	G	2.295e^-4	0.814	INTRON dve
2L	14684307	2L_14684307_SNP [dm3] 2L_14684307_SNP [dm6]	A	T	2.296e^-4	0.814	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	6952444	X_6952444_SNP [dm3] X_7058411_SNP [dm6]	T	A	2.297e^-4	0.814	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6952448	X_6952448_SNP [dm3] X_7058415_SNP [dm6]	T	A	2.297e^-4	0.814	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	5815513	X_5815513_SNP [dm3] X_5921480_SNP [dm6]	A	T	2.304e^-4	0.814	INTRON CG3726
2L	14684262	2L_14684262_SNP [dm3] 2L_14684262_SNP [dm6]	T	C	2.307e^-4	0.814	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14684264	2L_14684264_SNP [dm3] 2L_14684264_SNP [dm6]	G	T	2.307e^-4	0.814	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12150531	2L_12150531_SNP [dm3] 2L_12150531_SNP [dm6]	C	A	2.307e^-4	0.814	INTRON CG31760
2L	2595247	2L_2595247_SNP [dm3] 2L_2595247_SNP [dm6]	G	C	2.311e^-4	0.814	INTERGENIC
3R	15710930	3R_15710930_SNP [dm3] 3R_19885208_SNP [dm6]	G	A	2.323e^-4	0.814	NON_SYNONYMOUS_CODING Pk92B
2R	9582965	2R_9582965_SNP [dm3] 2R_13695460_SNP [dm6]	T	A	2.331e^-4	0.814	INTRON fas
2L	5876378	2L_5876378_SNP [dm3] 2L_5876378_SNP [dm6]	A	G	2.333e^-4	0.814	INTRON rau
2R	14706744	2R_14706744_SNP [dm3] 2R_18819239_SNP [dm6]	C	A	2.336e^-4	0.814	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	1244056	X_1244056_SNP [dm3] X_1350023_SNP [dm6]	A	G	2.337e^-4	0.814	UTR_3_PRIME CG12773 UPSTREAM CG11418	TF binding site mE1_TFBS_HSA
3R	15136988	3R_15136988_INS [dm3] 3R_19311266_INS [dm6]	T	TT	2.344e^-4	0.814	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	5678520	3R_5678520_INS [dm3] 3R_9852798_INS [dm6]	C	ATAAG	2.350e^-4	0.814	INTRON Teh1
2L	3538514	2L_3538514_SNP [dm3] 2L_3538514_SNP [dm6]	A	G	2.352e^-4	0.814	UPSTREAM drm DOWNSTREAM CR44308 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_Trl
2L	5871915	2L_5871915_SNP [dm3] 2L_5871915_SNP [dm6]	G	A	2.358e^-4	0.814	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	17856002	3R_17856002_SNP [dm3] 3R_22030280_SNP [dm6]	C	T	2.359e^-4	0.814	DOWNSTREAM ND42 INTRON CG13409	TF binding site mE1_TFBS_cad
2L	12297009	2L_12297009_SNP [dm3] 2L_12297009_SNP [dm6]	A	C	2.369e^-4	0.814	INTRON aret
2R	7471135	2R_7471135_SNP [dm3] 2R_11583630_SNP [dm6]	C	T	2.370e^-4	0.814	SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14663913	2R_14663913_SNP [dm3] 2R_18776408_SNP [dm6]	A	G	2.373e^-4	0.814	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10235549	3L_10235549_SNP [dm3] 3L_10242449_SNP [dm6]	A	G	2.377e^-4	0.814	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	2.379e^-4	0.814	INTRON nwk
X	16430576	X_16430576_INS [dm3] X_16536543_INS [dm6]	A	ACAATA	2.380e^-4	0.814	INTERGENIC
2L	5872903	2L_5872903_SNP [dm3] 2L_5872903_SNP [dm6]	T	G	2.383e^-4	0.814	INTRON rau	TF binding site mE1_TFBS_sens
3L	9777742	3L_9777742_SNP [dm3] 3L_9784642_SNP [dm6]	T	G	2.392e^-4	0.814	INTRON CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23422856	3L_23422856_SNP [dm3] 3L_23429756_SNP [dm6]	G	C	2.398e^-4	0.814	INTERGENIC	transposable element FlyBase
2R	8870973	2R_8870973_SNP [dm3] 2R_12983468_SNP [dm6]	T	C	2.398e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11145084	2L_11145084_SNP [dm3] 2L_11145084_SNP [dm6]	A	C	2.405e^-4	0.814	NON_SYNONYMOUS_CODING CG31867 INTRON Gyc32E
3R	10920076	3R_10920076_INS [dm3] 3R_15094354_INS [dm6]	T	TAGTCACA	2.407e^-4	0.814	INTRON CG6966	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14598532	2L_14598532_SNP [dm3] 2L_14598532_SNP [dm6]	C	T	2.413e^-4	0.814	UPSTREAM tRNA:P:35Ba DOWNSTREAM osp & 1 other INTERGENIC
2R	11702850	2R_11702850_SNP [dm3] 2R_15815345_SNP [dm6]	A	G	2.414e^-4	0.814	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23250992	3L_23250992_SNP [dm3] 3L_23257892_SNP [dm6]	G	A	2.416e^-4	0.814	INTRON nAChRalpha4
3L	11343008	3L_11343008_SNP [dm3] 3L_11349908_SNP [dm6]	A	G	2.418e^-4	0.814	UPSTREAM CR45251 INTERGENIC
2R	17382956	2R_17382956_SNP [dm3] 2R_21495451_SNP [dm6]	A	T	2.419e^-4	0.814	UTR_5_PRIME Fkbp14 INTRON Fkbp14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14931678	3R_14931678_SNP [dm3] 3R_19105956_SNP [dm6]	C	G	2.437e^-4	0.814	INTRON CG6040
2R	15346914	2R_15346914_SNP [dm3] 2R_19459409_SNP [dm6]	A	G	2.439e^-4	0.814	UTR_3_PRIME mei-W68 INTRON par-1
3R	16720657	3R_16720657_SNP [dm3] 3R_20894935_SNP [dm6]	A	C	2.447e^-4	0.814	UTR_3_PRIME CG10830
3L	1040729	3L_1040729_SNP [dm3] 3L_1040729_SNP [dm6]	C	T	2.458e^-4	0.814	INTRON bab1
2R	8003640	2R_8003640_SNP [dm3] 2R_12116135_SNP [dm6]	A	T	2.466e^-4	0.814	INTRON jeb
2L	10713181	2L_10713181_INS [dm3] 2L_10713181_INS [dm6]	T	TG	2.468e^-4	0.814	INTERGENIC
X	6952470	X_6952470_SNP [dm3] X_7058437_SNP [dm6]	A	T	2.469e^-4	0.814	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13861610	2R_13861610_SNP [dm3] 2R_17974105_SNP [dm6]	T	A	2.471e^-4	0.814	INTERGENIC
2R	4374847	2R_4374847_SNP [dm3] 2R_8487342_SNP [dm6]	G	T	2.477e^-4	0.814	INTRON mtt
3R	14468698	3R_14468698_SNP [dm3] 3R_18642976_SNP [dm6]	C	T	2.484e^-4	0.814	INTRON qin
3L	11343729	3L_11343729_SNP [dm3] 3L_11350629_SNP [dm6]	A	T	2.484e^-4	0.814	UPSTREAM CR45251 INTERGENIC
X	3978439	X_3978439_SNP [dm3] X_4084406_SNP [dm6]	G	A	2.486e^-4	0.814	INTRON CG43689	TF binding site mE1_TFBS_chinmo
2L	6937352	2L_6937352_SNP [dm3] 2L_6937352_SNP [dm6]	T	C	2.490e^-4	0.814	INTRON CG18304
2L	17996771	2L_17996771_SNP [dm3] 2L_17996771_SNP [dm6]	T	C	2.492e^-4	0.814	INTERGENIC
3R	13183397	3R_13183397_SNP [dm3] 3R_17357675_SNP [dm6]	T	A	2.495e^-4	0.814	INTRON beat-IIa
2R	4356859	2R_4356859_SNP [dm3] 2R_8469354_SNP [dm6]	G	C	2.500e^-4	0.814	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
2L	15900311	2L_15900311_SNP [dm3] 2L_15900311_SNP [dm6]	T	C	2.506e^-4	0.814	DOWNSTREAM CG31821 INTRON CG31823
2R	18155865	2R_18155865_SNP [dm3] 2R_22268360_SNP [dm6]	C	G	2.508e^-4	0.814	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12168845	3L_12168845_SNP [dm3] 3L_12175745_SNP [dm6]	G	T	2.509e^-4	0.814	UPSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11703045	2R_11703045_SNP [dm3] 2R_15815540_SNP [dm6]	A	T	2.510e^-4	0.814	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7904454	X_7904454_DEL [dm3] X_8010421_DEL [dm6]	GTG	G	2.512e^-4	0.814	INTRON Tbh
3L	19413144	3L_19413144_SNP [dm3] 3L_19420044_SNP [dm6]	A	C	2.513e^-4	0.814	INTERGENIC
2R	10175819	2R_10175819_SNP [dm3] 2R_14288314_SNP [dm6]	G	T	2.518e^-4	0.814	UPSTREAM Ih INTRON Ih
X	14361515	X_14361515_DEL [dm3] X_14467482_DEL [dm6]	AAGCCAAACCA...	A	2.526e^-4	0.814	INTERGENIC
3R	18103727	3R_18103727_SNP [dm3] 3R_22278005_SNP [dm6]	C	A	2.527e^-4	0.814	INTRON SKIP
2L	9667544	2L_9667544_SNP [dm3] 2L_9667544_SNP [dm6]	A	G	2.532e^-4	0.814	INTERGENIC
2L	2236670	2L_2236670_SNP [dm3] 2L_2236670_SNP [dm6]	T	A	2.534e^-4	0.814	UTR_5_PRIME Sec24CD DOWNSTREAM Tengl3 EXON CR44115	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	9586792	3L_9586792_SNP [dm3] 3L_9593692_SNP [dm6]	A	G	2.534e^-4	0.814	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site mE1_TFBS_chinmo
3L	15266225	3L_15266225_SNP [dm3] 3L_15273125_SNP [dm6]	G	T	2.534e^-4	0.814	INTERGENIC
2R	11618559	2R_11618559_SNP [dm3] 2R_15731054_SNP [dm6]	C	G	2.542e^-4	0.815	INTRON CG30089
3R	15462950	3R_15462950_SNP [dm3] 3R_19637228_SNP [dm6]	G	A	2.557e^-4	0.818	SYNONYMOUS_CODING subdued
3L	12839957	3L_12839957_SNP [dm3] 3L_12846857_SNP [dm6]	A	T	2.567e^-4	0.818	INTRON CG10948	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	20126117	3R_20126117_INS [dm3] 3R_24300395_INS [dm6]	T	TCG	2.569e^-4	0.818	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	26484136	3R_26484136_DEL [dm3] 3R_30658414_DEL [dm6]	GG	G	2.570e^-4	0.818	INTERGENIC
3L	7316366	3L_7316366_SNP [dm3] 3L_7323266_SNP [dm6]	G	A	2.578e^-4	0.819	SYNONYMOUS_CODING RhoGEF4 UPSTREAM Rint1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	15995290	3R_15995290_SNP [dm3] 3R_20169568_SNP [dm6]	T	A	2.592e^-4	0.822	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5111868	2L_5111868_SNP [dm3] 2L_5111868_SNP [dm6]	G	T	2.596e^-4	0.822	INTRON Msp300
2R	14137960	2R_14137960_SNP [dm3] 2R_18250455_SNP [dm6]	C	T	2.601e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18150407	2R_18150407_SNP [dm3] 2R_22262902_SNP [dm6]	G	C	2.602e^-4	0.822	SYNONYMOUS_CODING dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14138775	2R_14138775_SNP [dm3] 2R_18251270_SNP [dm6]	G	A	2.608e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2229426	2L_2229426_SNP [dm3] 2L_2229426_SNP [dm6]	C	T	2.615e^-4	0.822	INTRON rti
3L	23425849	3L_23425849_SNP [dm3] 3L_23432749_SNP [dm6]	C	T	2.616e^-4	0.822	INTERGENIC	transposable element FlyBase
2R	18490004	2R_18490004_SNP [dm3] 2R_22602499_SNP [dm6]	C	A	2.625e^-4	0.822	NON_SYNONYMOUS_CODING CG4294
3R	4756119	3R_4756119_SNP [dm3] 3R_8930397_SNP [dm6]	C	T	2.629e^-4	0.822	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12492280	3L_12492280_SNP [dm3] 3L_12499180_SNP [dm6]	G	A	2.636e^-4	0.822	SYNONYMOUS_CODING CG10638 DOWNSTREAM CG10638 INTRON CR43868
3L	9095725	3L_9095725_SNP [dm3] 3L_9102625_SNP [dm6]	A	G	2.641e^-4	0.822	UTR_3_PRIME bol
3L	9578845	3L_9578845_SNP [dm3] 3L_9585745_SNP [dm6]	A	G	2.644e^-4	0.822	INTRON CG42673
3R	22778342	3R_22778342_SNP [dm3] 3R_26952620_SNP [dm6]	A	C	2.644e^-4	0.822	INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13970198	3R_13970198_SNP [dm3] 3R_18144476_SNP [dm6]	A	T	2.651e^-4	0.823	INTERGENIC
3L	14326749	3L_14326749_SNP [dm3] 3L_14333649_SNP [dm6]	C	A	2.669e^-4	0.827	INTRON fz
3L	22548856	3L_22548856_SNP [dm3] 3L_22555756_SNP [dm6]	G	A	2.674e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	15884735	2L_15884735_SNP [dm3] 2L_15884735_SNP [dm6]	G	C	2.678e^-4	0.827	INTERGENIC
3L	1355949	3L_1355949_SNP [dm3] 3L_1355949_SNP [dm6]	A	T	2.682e^-4	0.827	INTRON Ptp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6106431	2L_6106431_SNP [dm3] 2L_6106431_SNP [dm6]	T	A	2.684e^-4	0.827	INTRON stai
3R	6648222	3R_6648222_SNP [dm3] 3R_10822500_SNP [dm6]	T	A	2.692e^-4	0.827	INTERGENIC
2L	17539044	2L_17539044_SNP [dm3] 2L_17539044_SNP [dm6]	A	G	2.697e^-4	0.827	INTERGENIC
2L	9755324	2L_9755324_SNP [dm3] 2L_9755324_SNP [dm6]	A	G	2.699e^-4	0.827	INTERGENIC
3R	16990897	3R_16990897_SNP [dm3] 3R_21165175_SNP [dm6]	T	C	2.713e^-4	0.827	UTR_3_PRIME Snmp1 DOWNSTREAM Snmp1 & 1 other INTRON SNF4Agamma
3R	20126110	3R_20126110_DEL [dm3] 3R_24300388_DEL [dm6]	CCTTAGA	C	2.714e^-4	0.827	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	9196625	3R_9196625_SNP [dm3] 3R_13370903_SNP [dm6]	A	G	2.716e^-4	0.827	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
3L	19411763	3L_19411763_SNP [dm3] 3L_19418663_SNP [dm6]	T	A	2.722e^-4	0.827	INTERGENIC
2R	15729984	2R_15729984_SNP [dm3] 2R_19842479_SNP [dm6]	T	G	2.734e^-4	0.827	DOWNSTREAM CG44569 INTERGENIC
3L	5334849	3L_5334849_SNP [dm3] 3L_5341749_SNP [dm6]	T	C	2.738e^-4	0.827	UPSTREAM tRNA:S7:64D INTERGENIC
3L	10235532	3L_10235532_SNP [dm3] 3L_10242432_SNP [dm6]	C	T	2.741e^-4	0.827	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	10215988	3L_10215988_SNP [dm3] 3L_10222888_SNP [dm6]	A	T	2.743e^-4	0.827	INTRON scramb1
2L	9801443	2L_9801443_SNP [dm3] 2L_9801443_SNP [dm6]	G	A	2.749e^-4	0.827	INTRON nAChRalpha6
X	9105089	X_9105089_SNP [dm3] X_9211056_SNP [dm6]	C	T	2.751e^-4	0.827	UPSTREAM CG12119 INTERGENIC
3L	16267955	3L_16267955_SNP [dm3] 3L_16274855_SNP [dm6]	C	T	2.756e^-4	0.827	INTERGENIC
3R	23163351	3R_23163351_SNP [dm3] 3R_27337629_SNP [dm6]	T	G	2.759e^-4	0.827	INTERGENIC
2L	12136392	2L_12136392_SNP [dm3] 2L_12136392_SNP [dm6]	G	T	2.759e^-4	0.827	INTERGENIC
2R	9724831	2R_9724831_DEL [dm3] 2R_13837326_DEL [dm6]	TGAAGACA	ATTT	2.762e^-4	0.827	INTRON CG6347
2L	15393752	2L_15393752_SNP [dm3] 2L_15393752_SNP [dm6]	A	G	2.765e^-4	0.827	INTERGENIC
3R	15672655	3R_15672655_SNP [dm3] 3R_19846933_SNP [dm6]	C	T	2.781e^-4	0.829	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25023505	3R_25023505_SNP [dm3] 3R_29197783_SNP [dm6]	C	T	2.784e^-4	0.829	SYNONYMOUS_CODING CG14515	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11338350	3L_11338350_SNP [dm3] 3L_11345250_SNP [dm6]	T	C	2.786e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	15761887	3R_15761887_SNP [dm3] 3R_19936165_SNP [dm6]	T	G	2.790e^-4	0.829	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9586549	3L_9586549_SNP [dm3] 3L_9593449_SNP [dm6]	A	T	2.808e^-4	0.833	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	17590374	3L_17590374_SNP [dm3] 3L_17597274_SNP [dm6]	T	G	2.812e^-4	0.833	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	3637815	2L_3637815_SNP [dm3] 2L_3637815_SNP [dm6]	C	T	2.818e^-4	0.833	UPSTREAM mir-4972 INTRON for
3R	16606068	3R_16606068_SNP [dm3] 3R_20780346_SNP [dm6]	G	C	2.827e^-4	0.833	UTR_5_PRIME Syp INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19011154	2L_19011154_SNP [dm3] 2L_19011154_SNP [dm6]	T	C	2.832e^-4	0.833	SYNONYMOUS_CODING robl37BC UPSTREAM CR45292	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11165672	3L_11165672_SNP [dm3] 3L_11172572_SNP [dm6]	G	C	2.837e^-4	0.833	UPSTREAM CG14142 DOWNSTREAM CG7616 INTERGENIC
2L	6313229	2L_6313229_SNP [dm3] 2L_6313229_SNP [dm6]	A	G	2.852e^-4	0.833	INTRON Ddr
2L	6313348	2L_6313348_SNP [dm3] 2L_6313348_SNP [dm6]	C	A	2.853e^-4	0.833	INTRON Ddr
3L	11043452	3L_11043452_DEL [dm3] 3L_11050352_DEL [dm6]	CGGA	AT	2.859e^-4	0.833	UTR_5_PRIME CG43693 UPSTREAM CR45119 INTRON CG43693
2L	504276	2L_504276_SNP [dm3] 2L_504276_SNP [dm6]	T	A	2.867e^-4	0.833	INTRON ush
2R	18117018	2R_18117018_SNP [dm3] 2R_22229513_SNP [dm6]	G	C	2.868e^-4	0.833	UPSTREAM Oatp58Dc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8935603	2L_8935603_SNP [dm3] 2L_8935603_SNP [dm6]	A	C	2.871e^-4	0.833	NON_SYNONYMOUS_CODING Tsp29Fa
3L	1034183	3L_1034183_SNP [dm3] 3L_1034183_SNP [dm6]	T	G	2.872e^-4	0.833	UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17768554	2L_17768554_SNP [dm3] 2L_17768554_SNP [dm6]	A	G	2.873e^-4	0.833	INTRON CadN
3R	25775690	3R_25775690_SNP [dm3] 3R_29949968_SNP [dm6]	T	A	2.874e^-4	0.833	DOWNSTREAM TkR99D INTERGENIC
2L	21901015	2L_21901015_SNP [dm3] 2L_21901015_SNP [dm6]	C	G	2.875e^-4	0.833	INTERGENIC
3R	21853020	3R_21853020_SNP [dm3] 3R_26027298_SNP [dm6]	C	T	2.902e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10967572	2R_10967572_SNP [dm3] 2R_15080067_SNP [dm6]	T	G	2.902e^-4	0.834	INTERGENIC
3L	13469152	3L_13469152_SNP [dm3] 3L_13476052_SNP [dm6]	A	T	2.905e^-4	0.834	INTERGENIC
3R	10526417	3R_10526417_SNP [dm3] 3R_14700695_SNP [dm6]	C	T	2.905e^-4	0.834	INTRON kibra	TF binding site mE1_TFBS_cad
3R	25847019	3R_25847019_SNP [dm3] 3R_30021297_SNP [dm6]	T	C	2.906e^-4	0.834	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2R	8515007	2R_8515007_SNP [dm3] 2R_12627502_SNP [dm6]	G	A	2.912e^-4	0.834	INTRON CG17760
3R	27473029	3R_27473029_SNP [dm3] 3R_31647307_SNP [dm6]	A	G	2.914e^-4	0.834	INTRON kek6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8758002	X_8758002_SNP [dm3] X_8863969_SNP [dm6]	T	C	2.925e^-4	0.834	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11703771	2R_11703771_SNP [dm3] 2R_15816266_SNP [dm6]	G	A	2.928e^-4	0.834	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z
2L	18586090	2L_18586090_SNP [dm3] 2L_18586090_SNP [dm6]	G	T	2.933e^-4	0.834	INTRON Pde11
3R	19572399	3R_19572399_SNP [dm3] 3R_23746677_SNP [dm6]	T	G	2.945e^-4	0.834	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	246853	2L_246853_SNP [dm3] 2L_246853_SNP [dm6]	A	G	2.949e^-4	0.834	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14131007	2L_14131007_SNP [dm3] 2L_14131007_SNP [dm6]	T	C	2.950e^-4	0.834	INTERGENIC
2L	16372818	2L_16372818_SNP [dm3] 2L_16372818_SNP [dm6]	A	T	2.952e^-4	0.834	INTERGENIC
3R	15399437	3R_15399437_SNP [dm3] 3R_19573715_SNP [dm6]	A	G	2.953e^-4	0.834	INTRON Dys
X	5740956	X_5740956_SNP [dm3] X_5846923_SNP [dm6]	C	T	2.959e^-4	0.834	DOWNSTREAM CG12729 INTERGENIC
3L	3107681	3L_3107681_SNP [dm3] 3L_3107681_SNP [dm6]	C	A	2.962e^-4	0.834	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	2.968e^-4	0.834	INTRON nwk
2R	7611672	2R_7611672_SNP [dm3] 2R_11724167_SNP [dm6]	T	G	2.973e^-4	0.834	INTRON pyr
3R	13631409	3R_13631409_SNP [dm3] 3R_17805687_SNP [dm6]	C	T	2.974e^-4	0.834	UTR_3_PRIME CG17801 UPSTREAM CG17802	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11196867	3L_11196867_SNP [dm3] 3L_11203767_SNP [dm6]	T	A	2.974e^-4	0.834	INTRON Plod
2L	10712908	2L_10712908_SNP [dm3] 2L_10712908_SNP [dm6]	G	T	2.975e^-4	0.834	INTERGENIC
2L	5525633	2L_5525633_SNP [dm3] 2L_5525633_SNP [dm6]	C	G	2.985e^-4	0.834	SYNONYMOUS_CODING CG6907 UPSTREAM Cap-D3 DOWNSTREAM CR44793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6106918	3L_6106918_SNP [dm3] 3L_6113818_SNP [dm6]	A	C	2.987e^-4	0.834	INTRON Ets65A
3L	11226768	3L_11226768_SNP [dm3] 3L_11233668_SNP [dm6]	C	A	2.993e^-4	0.834	INTRON Ir68a
3R	18871330	3R_18871330_SNP [dm3] 3R_23045608_SNP [dm6]	G	A	3.003e^-4	0.834	SYNONYMOUS_CODING CG17121 DOWNSTREAM CG13837	TF binding site BDTNP1_TFBS_twi
3R	13631274	3R_13631274_SNP [dm3] 3R_17805552_SNP [dm6]	A	T	3.006e^-4	0.834	UPSTREAM CG17802 DOWNSTREAM CG17801 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4687502	3R_4687502_SNP [dm3] 3R_8861780_SNP [dm6]	A	G	3.010e^-4	0.834	UPSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13410932	2L_13410932_SNP [dm3] 2L_13410932_SNP [dm6]	A	G	3.013e^-4	0.834	UTR_3_PRIME CG7110 DOWNSTREAM Vm34Ca
2L	9155589	2L_9155589_SNP [dm3] 2L_9155589_SNP [dm6]	T	G	3.016e^-4	0.834	INTRON CG32982
3R	20844011	3R_20844011_SNP [dm3] 3R_25018289_SNP [dm6]	A	T	3.023e^-4	0.834	NON_SYNONYMOUS_CODING tnc
3R	3148749	3R_3148749_SNP [dm3] 3R_7323027_SNP [dm6]	A	T	3.023e^-4	0.834	INTERGENIC
2L	8215605	2L_8215605_SNP [dm3] 2L_8215605_SNP [dm6]	A	C	3.024e^-4	0.834	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17468174	2L_17468174_DEL [dm3] 2L_17468174_DEL [dm6]	TAGTA	T	3.030e^-4	0.834	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11343667	3L_11343667_SNP [dm3] 3L_11350567_SNP [dm6]	A	G	3.045e^-4	0.834	UPSTREAM CR45251 INTERGENIC
X	12653645	X_12653645_SNP [dm3] X_12759612_SNP [dm6]	C	G	3.045e^-4	0.834	SPLICE_SITE_REGION ade5 INTRON ade5
3R	24598911	3R_24598911_SNP [dm3] 3R_28773189_SNP [dm6]	A	G	3.046e^-4	0.834	INTERGENIC
3R	10226018	3R_10226018_SNP [dm3] 3R_14400296_SNP [dm6]	T	C	3.047e^-4	0.834	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	27545021	3R_27545021_SNP [dm3] 3R_31719299_SNP [dm6]	G	C	3.067e^-4	0.835	INTRON ttk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10910585	2L_10910585_SNP [dm3] 2L_10910585_SNP [dm6]	G	C	3.071e^-4	0.835	UTR_5_PRIME CG14069 UPSTREAM CG14069
2L	9155576	2L_9155576_SNP [dm3] 2L_9155576_SNP [dm6]	G	T	3.073e^-4	0.835	INTRON CG32982
3L	5879367	3L_5879367_DEL [dm3] 3L_5886267_DEL [dm6]	CA	C	3.073e^-4	0.835	INTERGENIC	insulator Insulator_Class_II.mE01
X	6952458	X_6952458_SNP [dm3] X_7058425_SNP [dm6]	C	T	3.078e^-4	0.835	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11333866	3L_11333866_SNP [dm3] 3L_11340766_SNP [dm6]	A	G	3.086e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	85608	2L_85608_SNP [dm3] 2L_85608_SNP [dm6]	A	G	3.087e^-4	0.835	INTRON net	TF binding site mE1_TFBS_cad
2L	10303364	2L_10303364_SNP [dm3] 2L_10303364_SNP [dm6]	T	C	3.089e^-4	0.835	SYNONYMOUS_CODING nmd DOWNSTREAM CG5390	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9724881	2R_9724881_SNP [dm3] 2R_13837376_SNP [dm6]	C	T	3.090e^-4	0.835	INTRON CG6347
3L	11215254	3L_11215254_SNP [dm3] 3L_11222154_SNP [dm6]	A	G	3.103e^-4	0.836	INTRON CG42671
3L	14045803	3L_14045803_SNP [dm3] 3L_14052703_SNP [dm6]	C	A	3.103e^-4	0.836	NON_SYNONYMOUS_CODING CG13484 UPSTREAM CG43986 & 1 other DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11480281	2R_11480281_SNP [dm3] 2R_15592776_SNP [dm6]	G	T	3.116e^-4	0.836	INTERGENIC
X	4559742	X_4559742_SNP [dm3] X_4665709_SNP [dm6]	C	T	3.118e^-4	0.836	INTRON CG3009
3L	9113345	3L_9113345_SNP [dm3] 3L_9120245_SNP [dm6]	T	C	3.119e^-4	0.836	INTRON bol
3R	15671273	3R_15671273_SNP [dm3] 3R_19845551_SNP [dm6]	G	A	3.120e^-4	0.836	INTERGENIC
3R	25228946	3R_25228946_SNP [dm3] 3R_29403224_SNP [dm6]	G	T	3.124e^-4	0.836	INTRON Ptp99A
3R	18895169	3R_18895169_SNP [dm3] 3R_23069447_SNP [dm6]	G	A	3.138e^-4	0.836	INTERGENIC
3L	10235450	3L_10235450_SNP [dm3] 3L_10242350_SNP [dm6]	T	C	3.139e^-4	0.836	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	18210308	3L_18210308_DEL [dm3] 3L_18217208_DEL [dm6]	TCCATTTCAGAT...	T	3.144e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10436417	3R_10436417_SNP [dm3] 3R_14610695_SNP [dm6]	T	C	3.156e^-4	0.836	INTRON CG14853
2L	14131017	2L_14131017_SNP [dm3] 2L_14131017_SNP [dm6]	G	C	3.158e^-4	0.836	INTERGENIC
2L	10685153	2L_10685153_SNP [dm3] 2L_10685153_SNP [dm6]	T	C	3.172e^-4	0.836	UPSTREAM CG7299 DOWNSTREAM CG7296 INTERGENIC
3L	14059252	3L_14059252_SNP [dm3] 3L_14066152_SNP [dm6]	T	C	3.172e^-4	0.836	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	519936	2L_519936_SNP [dm3] 2L_519936_SNP [dm6]	T	A	3.179e^-4	0.836	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
X	9929573	X_9929573_SNP [dm3] X_10035540_SNP [dm6]	C	A	3.180e^-4	0.836	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA
3L	1358030	3L_1358030_SNP [dm3] 3L_1358030_SNP [dm6]	T	G	3.192e^-4	0.836	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	20903901	3L_20903901_SNP [dm3] 3L_20910801_SNP [dm6]	G	A	3.194e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15900287	2L_15900287_SNP [dm3] 2L_15900287_SNP [dm6]	T	A	3.203e^-4	0.836	DOWNSTREAM CG31821 INTRON CG31823
3R	9201919	3R_9201919_SNP [dm3] 3R_13376197_SNP [dm6]	A	C	3.214e^-4	0.836	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15900587	2L_15900587_SNP [dm3] 2L_15900587_SNP [dm6]	A	G	3.215e^-4	0.836	UPSTREAM CG31823 DOWNSTREAM CG31821 INTERGENIC
3L	7620278	3L_7620278_SNP [dm3] 3L_7627178_SNP [dm6]	A	T	3.217e^-4	0.836	INTRON CG33275
3R	22784974	3R_22784974_SNP [dm3] 3R_26959252_SNP [dm6]	T	A	3.218e^-4	0.836	UPSTREAM CG6330 INTERGENIC
2L	14599225	2L_14599225_SNP [dm3] 2L_14599225_SNP [dm6]	C	G	3.221e^-4	0.836	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11196945	3L_11196945_SNP [dm3] 3L_11203845_SNP [dm6]	A	G	3.224e^-4	0.836	INTRON Plod
3L	12589592	3L_12589592_SNP [dm3] 3L_12596492_SNP [dm6]	T	G	3.227e^-4	0.836	DOWNSTREAM ara INTERGENIC
3L	10235644	3L_10235644_DEL [dm3] 3L_10242544_DEL [dm6]	TT	T	3.228e^-4	0.836	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	13631118	3R_13631118_SNP [dm3] 3R_17805396_SNP [dm6]	C	T	3.232e^-4	0.836	UPSTREAM CG17802 DOWNSTREAM CG17801 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7950799	2L_7950799_DEL [dm3] 2L_7950799_DEL [dm6]	GGAAATAG	G	3.233e^-4	0.836	INTRON Snoo
2L	5882281	2L_5882281_SNP [dm3] 2L_5882281_SNP [dm6]	C	T	3.240e^-4	0.836	INTERGENIC	regulatory region REDfly_CRMs
3L	14105304	3L_14105304_SNP [dm3] 3L_14112204_SNP [dm6]	C	T	3.242e^-4	0.836	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25663729	3R_25663729_SNP [dm3] 3R_29838007_SNP [dm6]	C	T	3.245e^-4	0.836	DOWNSTREAM CG15510 INTERGENIC
2R	10670503	2R_10670503_SNP [dm3] 2R_14782998_SNP [dm6]	T	C	3.247e^-4	0.836	INTRON kn
2L	17644102	2L_17644102_SNP [dm3] 2L_17644102_SNP [dm6]	G	C	3.248e^-4	0.836	DOWNSTREAM CR45699 INTERGENIC
3R	15665862	3R_15665862_SNP [dm3] 3R_19840140_SNP [dm6]	C	T	3.273e^-4	0.836	UPSTREAM CG31459 INTERGENIC
3R	10526414	3R_10526414_SNP [dm3] 3R_14700692_SNP [dm6]	G	T	3.274e^-4	0.836	INTRON kibra	TF binding site mE1_TFBS_cad
3L	12394023	3L_12394023_SNP [dm3] 3L_12400923_SNP [dm6]	C	G	3.276e^-4	0.836	SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13508054	2R_13508054_SNP [dm3] 2R_17620549_SNP [dm6]	T	A	3.287e^-4	0.836	INTRON CG10936
3R	4755241	3R_4755241_SNP [dm3] 3R_8929519_SNP [dm6]	G	A	3.298e^-4	0.836	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	18529038	3R_18529038_SNP [dm3] 3R_22703316_SNP [dm6]	A	G	3.302e^-4	0.836	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12637729	2R_12637729_SNP [dm3] 2R_16750224_SNP [dm6]	T	A	3.304e^-4	0.836	UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c INTRON Acp53Ea
3L	10235545	3L_10235545_SNP [dm3] 3L_10242445_SNP [dm6]	T	A	3.309e^-4	0.836	DOWNSTREAM CR44541 & 1 other INTERGENIC
2L	758812	2L_758812_SNP [dm3] 2L_758812_SNP [dm6]	G	C	3.310e^-4	0.836	INTRON GABA-B-R3
2L	20440094	2L_20440094_SNP [dm3] 2L_20440094_SNP [dm6]	A	C	3.315e^-4	0.836	INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9155864	2L_9155864_SNP [dm3] 2L_9155864_SNP [dm6]	A	G	3.317e^-4	0.836	INTRON CG32982
3L	10235476	3L_10235476_SNP [dm3] 3L_10242376_SNP [dm6]	A	T	3.319e^-4	0.836	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	6692166	3R_6692166_SNP [dm3] 3R_10866444_SNP [dm6]	T	G	3.319e^-4	0.836	INTRON SelR
X	12580521	X_12580521_SNP [dm3] X_12686488_SNP [dm6]	A	T	3.320e^-4	0.836	UTR_3_PRIME Smr	TF binding site mE1_TFBS_HSA
3L	13790841	3L_13790841_SNP [dm3] 3L_13797741_SNP [dm6]	G	T	3.322e^-4	0.836	INTRON bru-3
2L	19376999	2L_19376999_SNP [dm3] 2L_19376999_SNP [dm6]	C	G	3.327e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	15823561	2L_15823561_SNP [dm3] 2L_15823561_SNP [dm6]	C	T	3.328e^-4	0.836	UPSTREAM CR44601 INTERGENIC
3R	22772394	3R_22772394_SNP [dm3] 3R_26946672_SNP [dm6]	C	A	3.339e^-4	0.836	DOWNSTREAM tRNA:CR31071 & 1 other INTRON CG14252	TF binding site mE1_TFBS_sens
3R	13525892	3R_13525892_SNP [dm3] 3R_17700170_SNP [dm6]	C	T	3.343e^-4	0.836	INTRON osa	TF binding site BDTNP1_TFBS_dl
2L	12136622	2L_12136622_DEL [dm3] 2L_12136622_DEL [dm6]	ACGAA	T	3.346e^-4	0.836	INTERGENIC
2L	7004873	2L_7004873_INS [dm3] 2L_7004873_INS [dm6]	T	TTTGTATTTATCTTTTTCGG...	3.352e^-4	0.836	INTRON uif
3L	12394029	3L_12394029_SNP [dm3] 3L_12400929_SNP [dm6]	G	A	3.358e^-4	0.836	SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21901011	2L_21901011_SNP [dm3] 2L_21901011_SNP [dm6]	A	T	3.359e^-4	0.836	INTERGENIC
3R	10436351	3R_10436351_SNP [dm3] 3R_14610629_SNP [dm6]	G	T	3.362e^-4	0.836	INTRON CG14853
3R	3165959	3R_3165959_SNP [dm3] 3R_7340237_SNP [dm6]	C	A	3.376e^-4	0.836	INTERGENIC
2R	19042221	2R_19042221_INS [dm3] 2R_23154698_INS [dm6]	A	ATTTTTA	3.392e^-4	0.836	INTRON CG9899
2R	4354833	2R_4354833_SNP [dm3] 2R_8467328_SNP [dm6]	G	A	3.398e^-4	0.836	UTR_3_PRIME Mal-A6 DOWNSTREAM Mal-A6	TF binding site mE1_TFBS_chinmo
3L	2588069	3L_2588069_SNP [dm3] 3L_2588069_SNP [dm6]	T	C	3.406e^-4	0.836	INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16843949	2R_16843949_SNP [dm3] 2R_20956444_SNP [dm6]	C	T	3.407e^-4	0.836	INTRON hbn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3026878	3L_3026878_SNP [dm3] 3L_3026878_SNP [dm6]	C	A	3.421e^-4	0.836	UPSTREAM aly INTERGENIC
3R	21030991	3R_21030991_SNP [dm3] 3R_25205269_SNP [dm6]	G	C	3.421e^-4	0.836	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	9929560	X_9929560_SNP [dm3] X_10035527_SNP [dm6]	C	T	3.428e^-4	0.836	SYNONYMOUS_CODING Cht6 INTRON Cht6
3L	10997396	3L_10997396_SNP [dm3] 3L_11004296_SNP [dm6]	T	C	3.437e^-4	0.836	INTRON klu
3L	10997397	3L_10997397_SNP [dm3] 3L_11004297_SNP [dm6]	G	A	3.437e^-4	0.836	INTRON klu
2R	11735862	2R_11735862_SNP [dm3] 2R_15848357_SNP [dm6]	A	G	3.440e^-4	0.836	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3R	20845421	3R_20845421_SNP [dm3] 3R_25019699_SNP [dm6]	A	C	3.441e^-4	0.836	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	3.443e^-4	0.836	INTERGENIC
3R	25664645	3R_25664645_INS [dm3] 3R_29838923_INS [dm6]	A	GTCATCGTTAATCGT...	3.443e^-4	0.836	INTERGENIC
3L	11805216	3L_11805216_SNP [dm3] 3L_11812116_SNP [dm6]	T	C	3.446e^-4	0.836	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20872248	3L_20872248_SNP [dm3] 3L_20879148_SNP [dm6]	A	C	3.448e^-4	0.836	INTRON CG32432
2R	17066788	2R_17066788_SNP [dm3] 2R_21179283_SNP [dm6]	C	T	3.454e^-4	0.836	UTR_5_PRIME Pu UPSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12820845	X_12820845_SNP [dm3] X_12926812_SNP [dm6]	C	T	3.454e^-4	0.836	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	23184893	3L_23184893_SNP [dm3] 3L_23191793_SNP [dm6]	C	T	3.456e^-4	0.836	INTERGENIC	transposable element FlyBase
2L	10046812	2L_10046812_SNP [dm3] 2L_10046812_SNP [dm6]	C	T	3.460e^-4	0.836	INTERGENIC
3L	7514524	3L_7514524_SNP [dm3] 3L_7521424_SNP [dm6]	G	T	3.461e^-4	0.836	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	18383278	X_18383278_SNP [dm3] X_18489245_SNP [dm6]	C	T	3.467e^-4	0.836	INTRON CG15046	TF binding site mE1_TFBS_chinmo
3L	12100621	3L_12100621_SNP [dm3] 3L_12107521_SNP [dm6]	G	C	3.470e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11199015	3L_11199015_SNP [dm3] 3L_11205915_SNP [dm6]	G	A	3.472e^-4	0.836	UTR_5_PRIME Plod DOWNSTREAM Ube3a INTRON Plod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	10436203	3R_10436203_SNP [dm3] 3R_14610481_SNP [dm6]	T	C	3.475e^-4	0.836	INTRON CG14853
2R	4369971	2R_4369971_SNP [dm3] 2R_8482466_SNP [dm6]	A	G	3.477e^-4	0.836	INTRON mtt	TF binding site mE1_TFBS_chinmo
2L	10375919	2L_10375919_SNP [dm3] 2L_10375919_SNP [dm6]	A	T	3.478e^-4	0.836	UPSTREAM dpr19 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	5152238	3R_5152238_SNP [dm3] 3R_9326516_SNP [dm6]	A	G	3.499e^-4	0.836	INTRON CG8861
3L	14250174	3L_14250174_SNP [dm3] 3L_14257074_SNP [dm6]	G	A	3.502e^-4	0.836	INTERGENIC
X	8884665	X_8884665_SNP [dm3] X_8990632_SNP [dm6]	C	A	3.502e^-4	0.836	INTRON rdgA & 1 other
2R	16847912	2R_16847912_SNP [dm3] 2R_20960407_SNP [dm6]	T	C	3.507e^-4	0.836	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18852981	3R_18852981_SNP [dm3] 3R_23027259_SNP [dm6]	T	A	3.508e^-4	0.836	UPSTREAM lmd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15278004	3R_15278004_SNP [dm3] 3R_19452282_SNP [dm6]	G	T	3.510e^-4	0.836	INTRON CG31221	TF binding site mE1_TFBS_Kr
2R	9797497	2R_9797497_SNP [dm3] 2R_13909992_SNP [dm6]	G	A	3.520e^-4	0.836	INTRON shot
2R	18156277	2R_18156277_SNP [dm3] 2R_22268772_SNP [dm6]	G	T	3.527e^-4	0.836	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16226630	3R_16226630_SNP [dm3] 3R_20400908_SNP [dm6]	T	G	3.538e^-4	0.836	UTR_3_PRIME Gfrl INTRON Gfrl
3R	6689338	3R_6689338_SNP [dm3] 3R_10863616_SNP [dm6]	T	C	3.542e^-4	0.836	UTR_3_PRIME SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
3R	22786588	3R_22786588_SNP [dm3] 3R_26960866_SNP [dm6]	A	G	3.549e^-4	0.836	DOWNSTREAM Tsp97E INTERGENIC
3L	7316267	3L_7316267_SNP [dm3] 3L_7323167_SNP [dm6]	G	A	3.552e^-4	0.836	UPSTREAM Rint1 & 1 other INTRON RhoGEF4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	17466523	2L_17466523_SNP [dm3] 2L_17466523_SNP [dm6]	A	C	3.555e^-4	0.836	INTRON BicD
2R	8493016	2R_8493016_SNP [dm3] 2R_12605511_SNP [dm6]	T	C	3.555e^-4	0.836	INTRON Amph
X	19088722	X_19088722_SNP [dm3] X_19194689_SNP [dm6]	T	G	3.571e^-4	0.836	SYNONYMOUS_CODING CG14194
3L	18956606	3L_18956606_INS [dm3] 3L_18963506_INS [dm6]	C	CCCCC	3.572e^-4	0.836	INTERGENIC
2L	10096045	2L_10096045_SNP [dm3] 2L_10096045_SNP [dm6]	T	C	3.574e^-4	0.836	INTRON CG44153 & 1 other
3R	17340449	3R_17340449_DEL [dm3] 3R_21514727_DEL [dm6]	TGAA	T	3.575e^-4	0.836	INTERGENIC
2R	9168092	2R_9168092_SNP [dm3] 2R_13280587_SNP [dm6]	T	G	3.575e^-4	0.836	INTRON Dh31-R
3L	9945600	3L_9945600_SNP [dm3] 3L_9952500_SNP [dm6]	T	G	3.576e^-4	0.836	INTRON CG34356
2L	12892589	2L_12892589_SNP [dm3] 2L_12892589_SNP [dm6]	G	C	3.584e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25158671	3R_25158671_SNP [dm3] 3R_29332949_SNP [dm6]	G	A	3.585e^-4	0.836	INTERGENIC
3R	18728728	3R_18728728_SNP [dm3] 3R_22903006_SNP [dm6]	C	A	3.595e^-4	0.836	INTRON klg
2L	3769968	2L_3769968_SNP [dm3] 2L_3769968_SNP [dm6]	A	T	3.605e^-4	0.836	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	24073157	3L_24073157_SNP [dm3] 3L_24080057_SNP [dm6]	C	T	3.606e^-4	0.836	INTRON Snap25
3R	15462387	3R_15462387_SNP [dm3] 3R_19636665_SNP [dm6]	G	A	3.607e^-4	0.836	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3R	15278006	3R_15278006_SNP [dm3] 3R_19452284_SNP [dm6]	C	T	3.611e^-4	0.836	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	10822534	3R_10822534_SNP [dm3] 3R_14996812_SNP [dm6]	A	T	3.611e^-4	0.836	INTERGENIC
X	16722372	X_16722372_SNP [dm3] X_16828339_SNP [dm6]	T	C	3.613e^-4	0.836	UPSTREAM CG13004 INTRON CG13004
3L	11224081	3L_11224081_DEL [dm3] 3L_11230981_DEL [dm6]	AATCTTAAA	A	3.615e^-4	0.836	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	14598521	2L_14598521_SNP [dm3] 2L_14598521_SNP [dm6]	T	G	3.621e^-4	0.836	UPSTREAM tRNA:P:35Ba DOWNSTREAM osp & 1 other INTERGENIC
3R	25532705	3R_25532705_SNP [dm3] 3R_29706983_SNP [dm6]	G	A	3.622e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6848432	2L_6848432_SNP [dm3] 2L_6848432_SNP [dm6]	G	T	3.624e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	24246611	3L_24246611_SNP [dm3] 3L_24253511_SNP [dm6]	T	A	3.625e^-4	0.836	INTRON Snap25
2L	4047586	2L_4047586_SNP [dm3] 2L_4047586_SNP [dm6]	C	T	3.643e^-4	0.837	INTRON ed
2L	14049809	2L_14049809_SNP [dm3] 2L_14049809_SNP [dm6]	T	C	3.645e^-4	0.837	DOWNSTREAM NimC4 INTRON nAChRalpha5	TF binding site mE1_TFBS_inv
3R	18626314	3R_18626314_SNP [dm3] 3R_22800592_SNP [dm6]	A	T	3.647e^-4	0.837	INTERGENIC
3L	15088526	3L_15088526_SNP [dm3] 3L_15095426_SNP [dm6]	A	C	3.656e^-4	0.837	SYNONYMOUS_CODING Aats-gly UTR_5_PRIME Aats-gly UPSTREAM CG6945 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10215359	3L_10215359_SNP [dm3] 3L_10222259_SNP [dm6]	G	A	3.662e^-4	0.837	INTRON scramb1
3L	7315263	3L_7315263_SNP [dm3] 3L_7322163_SNP [dm6]	G	A	3.664e^-4	0.837	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607	TF binding site mE1_TFBS_sens
3L	9822260	3L_9822260_SNP [dm3] 3L_9829160_SNP [dm6]	T	A	3.670e^-4	0.837	UPSTREAM CG43897 INTRON CG43897
3L	10880451	3L_10880451_SNP [dm3] 3L_10887351_SNP [dm6]	C	T	3.670e^-4	0.837	UPSTREAM CG6404 INTERGENIC
2L	1094177	2L_1094177_SNP [dm3] 2L_1094177_SNP [dm6]	T	C	3.672e^-4	0.837	INTRON CG4629
3L	1264657	3L_1264657_SNP [dm3] 3L_1264657_SNP [dm6]	A	T	3.673e^-4	0.837	INTRON CG9134
2R	18490088	2R_18490088_SNP [dm3] 2R_22602583_SNP [dm6]	C	T	3.678e^-4	0.837	NON_SYNONYMOUS_CODING CG4294
3L	5339691	3L_5339691_DEL [dm3] 3L_5346591_DEL [dm6]	TATACA	T	3.696e^-4	0.839	INTRON lama
2R	14662956	2R_14662956_SNP [dm3] 2R_18775451_SNP [dm6]	A	G	3.700e^-4	0.839	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
3R	4686170	3R_4686170_SNP [dm3] 3R_8860448_SNP [dm6]	A	G	3.702e^-4	0.839	INTRON pyd
2L	2229720	2L_2229720_SNP [dm3] 2L_2229720_SNP [dm6]	T	C	3.705e^-4	0.839	SYNONYMOUS_CODING rti	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11001219	X_11001219_SNP [dm3] X_11107186_SNP [dm6]	C	T	3.724e^-4	0.842	SPLICE_SITE_REGION CG42249 DOWNSTREAM CG42249 INTRON CG42249
3L	14155654	3L_14155654_SNP [dm3] 3L_14162554_SNP [dm6]	A	C	3.730e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9666759	3L_9666759_SNP [dm3] 3L_9673659_SNP [dm6]	T	C	3.741e^-4	0.843	INTRON fry
2L	13518404	2L_13518404_SNP [dm3] 2L_13518404_SNP [dm6]	T	C	3.743e^-4	0.843	INTRON B4
3R	21030323	3R_21030323_SNP [dm3] 3R_25204601_SNP [dm6]	A	G	3.744e^-4	0.843	SYNONYMOUS_CODING Cad96Ca INTRON CG13654	TF binding site mE1_TFBS_cad
3L	10235522	3L_10235522_SNP [dm3] 3L_10242422_SNP [dm6]	G	T	3.756e^-4	0.844	DOWNSTREAM CR44541 & 1 other INTERGENIC
X	8601446	X_8601446_SNP [dm3] X_8707413_SNP [dm6]	A	G	3.763e^-4	0.844	UPSTREAM CR44508 EXON CR44507
2R	8835220	2R_8835220_SNP [dm3] 2R_12947715_SNP [dm6]	A	C	3.779e^-4	0.844	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10873623	3L_10873623_SNP [dm3] 3L_10880523_SNP [dm6]	C	T	3.785e^-4	0.844	DOWNSTREAM CG6409 & 1 other INTERGENIC
3R	10225964	3R_10225964_SNP [dm3] 3R_14400242_SNP [dm6]	G	A	3.789e^-4	0.844	INTRON cv-c	TF binding site mE1_TFBS_Trl
2R	17749525	2R_17749525_INS [dm3] 2R_21862020_INS [dm6]	A	AA	3.792e^-4	0.844	DOWNSTREAM CG9294 INTERGENIC
2R	17648180	2R_17648180_SNP [dm3] 2R_21760675_SNP [dm6]	A	T	3.793e^-4	0.844	INTERGENIC
3L	10215086	3L_10215086_SNP [dm3] 3L_10221986_SNP [dm6]	A	T	3.798e^-4	0.844	SYNONYMOUS_CODING scramb1	TF binding site mE1_TFBS_cad
3R	24702064	3R_24702064_SNP [dm3] 3R_28876342_SNP [dm6]	G	A	3.799e^-4	0.844	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7492442	X_7492442_INS [dm3] X_7598409_INS [dm6]	A	AA	3.801e^-4	0.844	INTERGENIC
2L	1715536	2L_1715536_SNP [dm3] 2L_1715536_SNP [dm6]	A	G	3.802e^-4	0.844	SYNONYMOUS_CODING frtz DOWNSTREAM Rim2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	9361807	2L_9361807_SNP [dm3] 2L_9361807_SNP [dm6]	T	C	3.802e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15551887	3R_15551887_SNP [dm3] 3R_19726165_SNP [dm6]	T	C	3.809e^-4	0.844	INTERGENIC
2L	847470	2L_847470_SNP [dm3] 2L_847470_SNP [dm6]	A	T	3.832e^-4	0.845	INTRON drongo
3R	15061217	3R_15061217_SNP [dm3] 3R_19235495_SNP [dm6]	C	T	3.833e^-4	0.845	SYNONYMOUS_CODING unc79
3R	17841788	3R_17841788_SNP [dm3] 3R_22016066_SNP [dm6]	T	C	3.835e^-4	0.845	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
3L	10146938	3L_10146938_SNP [dm3] 3L_10153838_SNP [dm6]	G	A	3.851e^-4	0.845	DOWNSTREAM CG8072 INTRON dpr10
3R	22927948	3R_22927948_INS [dm3] 3R_27102226_INS [dm6]	T	TGGGTTTTGCATCACTGAAT...	3.853e^-4	0.845	DOWNSTREAM CG6074 INTRON CG17189
3R	5427931	3R_5427931_SNP [dm3] 3R_9602209_SNP [dm6]	C	T	3.860e^-4	0.845	INTRON CG8312	TF binding site BDTNP1_TFBS_twi
2L	10375018	2L_10375018_SNP [dm3] 2L_10375018_SNP [dm6]	G	A	3.862e^-4	0.845	SYNONYMOUS_CODING CG33303	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21284138	3L_21284138_DEL [dm3] 3L_21291038_DEL [dm6]	GGG	CC	3.862e^-4	0.845	DOWNSTREAM pzg & 1 other INTERGENIC
3R	15763014	3R_15763014_SNP [dm3] 3R_19937292_SNP [dm6]	A	G	3.862e^-4	0.845	SYNONYMOUS_CODING Hs6st
3R	13670915	3R_13670915_SNP [dm3] 3R_17845193_SNP [dm6]	C	T	3.867e^-4	0.845	INTRON tinc
3L	12394018	3L_12394018_SNP [dm3] 3L_12400918_SNP [dm6]	A	C	3.881e^-4	0.845	NON_SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4452636	2L_4452636_SNP [dm3] 2L_4452636_SNP [dm6]	G	A	3.885e^-4	0.845	NON_SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25791712	3R_25791712_SNP [dm3] 3R_29965990_SNP [dm6]	G	T	3.887e^-4	0.845	INTRON TkR99D
2L	8012821	2L_8012821_SNP [dm3] 2L_8012821_SNP [dm6]	T	C	3.889e^-4	0.845	UTR_5_PRIME Tg INTRON Tg	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	17064834	3R_17064834_INS [dm3] 3R_21239112_INS [dm6]	C	GATCA	3.891e^-4	0.845	INTERGENIC	regulatory region REDfly_CRMs
3R	14546811	3R_14546811_DEL [dm3] 3R_18721089_DEL [dm6]	TATGATTTTTGCATCTAGTT...	CAAAGTTTATGATTATTATA...	3.894e^-4	0.845	DOWNSTREAM CG34283 INTRON Cha
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	3.903e^-4	0.845	INTRON nwk
3R	21030252	3R_21030252_SNP [dm3] 3R_25204530_SNP [dm6]	A	C	3.910e^-4	0.845	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3L	15777542	3L_15777542_SNP [dm3] 3L_15784442_SNP [dm6]	G	T	3.915e^-4	0.845	INTERGENIC
X	3978462	X_3978462_SNP [dm3] X_4084429_SNP [dm6]	A	T	3.922e^-4	0.845	INTRON CG43689	TF binding site mE1_TFBS_chinmo
3L	10235525	3L_10235525_SNP [dm3] 3L_10242425_SNP [dm6]	T	C	3.925e^-4	0.845	DOWNSTREAM CR44541 & 1 other INTERGENIC
X	8057629	X_8057629_SNP [dm3] X_8163596_SNP [dm6]	T	G	3.929e^-4	0.845	UPSTREAM CG10761 DOWNSTREAM Or7a & 1 other INTERGENIC
3R	18840719	3R_18840719_SNP [dm3] 3R_23014997_SNP [dm6]	A	G	3.932e^-4	0.845	NON_SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
3L	9813526	3L_9813526_DEL [dm3] 3L_9820426_DEL [dm6]	AAACAACCATA...	A	3.935e^-4	0.845	UTR_5_PRIME CG43897
3R	26302229	3R_26302229_DEL [dm3] 3R_30476507_DEL [dm6]	CCAA	C	3.938e^-4	0.845	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11870280	3L_11870280_SNP [dm3] 3L_11877180_SNP [dm6]	A	T	3.947e^-4	0.845	INTRON CG44837
3L	11870283	3L_11870283_SNP [dm3] 3L_11877183_SNP [dm6]	A	T	3.947e^-4	0.845	INTRON CG44837
2L	15900224	2L_15900224_SNP [dm3] 2L_15900224_SNP [dm6]	A	T	3.953e^-4	0.845	DOWNSTREAM CG31821 INTRON CG31823
2L	10818637	2L_10818637_SNP [dm3] 2L_10818637_SNP [dm6]	G	A	3.959e^-4	0.845	UPSTREAM CG6508 INTRON Nos
2L	9666640	2L_9666640_SNP [dm3] 2L_9666640_SNP [dm6]	T	G	3.968e^-4	0.845	INTERGENIC
3R	15550838	3R_15550838_SNP [dm3] 3R_19725116_SNP [dm6]	C	A	3.970e^-4	0.845	INTERGENIC
2L	10884544	2L_10884544_SNP [dm3] 2L_10884544_SNP [dm6]	G	T	3.974e^-4	0.845	INTERGENIC
3L	9872957	3L_9872957_SNP [dm3] 3L_9879857_SNP [dm6]	C	G	3.975e^-4	0.845	INTRON CG34382
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	3.984e^-4	0.845	INTRON Mhc
2R	16847780	2R_16847780_SNP [dm3] 2R_20960275_SNP [dm6]	C	G	3.987e^-4	0.845	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10206420	3R_10206420_SNP [dm3] 3R_14380698_SNP [dm6]	G	T	3.995e^-4	0.845	UTR_3_PRIME soti
3L	13252220	3L_13252220_SNP [dm3] 3L_13259120_SNP [dm6]	A	G	3.999e^-4	0.845	INTRON caps
3R	24824770	3R_24824770_SNP [dm3] 3R_28999048_SNP [dm6]	G	A	4.001e^-4	0.845	INTRON wat
2R	19918904	2R_19918904_SNP [dm3] 2R_24031381_SNP [dm6]	T	G	4.006e^-4	0.845	UTR_5_PRIME CG30172 UPSTREAM CG30172 DOWNSTREAM Chi & 1 other
3R	10436407	3R_10436407_SNP [dm3] 3R_14610685_SNP [dm6]	A	T	4.023e^-4	0.845	INTRON CG14853
2R	7557614	2R_7557614_SNP [dm3] 2R_11670109_SNP [dm6]	T	C	4.024e^-4	0.845	SYNONYMOUS_CODING Tret1-1 INTRON Roc2
2L	17766961	2L_17766961_SNP [dm3] 2L_17766961_SNP [dm6]	T	G	4.027e^-4	0.845	INTRON CadN
3L	18291658	3L_18291658_SNP [dm3] 3L_18298558_SNP [dm6]	A	G	4.027e^-4	0.845	DOWNSTREAM CG13700 INTERGENIC
X	8057661	X_8057661_SNP [dm3] X_8163628_SNP [dm6]	A	C	4.028e^-4	0.845	UPSTREAM CG10761 DOWNSTREAM Or7a & 1 other INTERGENIC
2L	15900299	2L_15900299_SNP [dm3] 2L_15900299_SNP [dm6]	G	T	4.028e^-4	0.845	DOWNSTREAM CG31821 INTRON CG31823
2L	4965786	2L_4965786_SNP [dm3] 2L_4965786_SNP [dm6]	T	C	4.036e^-4	0.845	SYNONYMOUS_CODING CG34125 UPSTREAM CR43824 DOWNSTREAM Trip1 & 1 other	TF binding site mE1_TFBS_cad
2L	14045671	2L_14045671_SNP [dm3] 2L_14045671_SNP [dm6]	A	G	4.038e^-4	0.845	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22657826	3R_22657826_SNP [dm3] 3R_26832104_SNP [dm6]	A	C	4.043e^-4	0.845	INTRON Tl
2R	4472973	2R_4472973_SNP [dm3] 2R_8585468_SNP [dm6]	A	T	4.048e^-4	0.845	UPSTREAM CG42326 INTERGENIC
3L	1624510	3L_1624510_SNP [dm3] 3L_1624510_SNP [dm6]	T	C	4.050e^-4	0.845	NON_SYNONYMOUS_CODING GC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2823209	2L_2823209_SNP [dm3] 2L_2823209_SNP [dm6]	A	G	4.065e^-4	0.845	DOWNSTREAM CG3123 INTRON Duox
2L	8190731	2L_8190731_SNP [dm3] 2L_8190731_SNP [dm6]	G	T	4.066e^-4	0.845	NON_SYNONYMOUS_CODING CG34134 DOWNSTREAM CG8475 & 1 other	TF binding site mE1_TFBS_cad
3L	2629666	3L_2629666_SNP [dm3] 3L_2629666_SNP [dm6]	A	C	4.075e^-4	0.845	UPSTREAM Pxn DOWNSTREAM CR45660 INTRON Pxn
3L	9581486	3L_9581486_SNP [dm3] 3L_9588386_SNP [dm6]	G	A	4.079e^-4	0.845	SYNONYMOUS_CODING CG42673	TF binding site mE1_TFBS_chinmo
2R	13704120	2R_13704120_SNP [dm3] 2R_17816615_SNP [dm6]	A	T	4.080e^-4	0.845	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8057644	X_8057644_SNP [dm3] X_8163611_SNP [dm6]	A	T	4.083e^-4	0.845	UPSTREAM CG10761 DOWNSTREAM Or7a & 1 other INTERGENIC
3R	6692491	3R_6692491_SNP [dm3] 3R_10866769_SNP [dm6]	T	G	4.086e^-4	0.845	INTRON SelR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11806436	3L_11806436_SNP [dm3] 3L_11813336_SNP [dm6]	C	A	4.087e^-4	0.845	NON_SYNONYMOUS_CODING CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	6594775	3R_6594775_SNP [dm3] 3R_10769053_SNP [dm6]	A	G	4.093e^-4	0.845	DOWNSTREAM CG45076 INTRON CG45076	TF binding site mE1_TFBS_chinmo
2L	18229543	2L_18229543_SNP [dm3] 2L_18229543_SNP [dm6]	C	T	4.094e^-4	0.845	INTRON CG42750
2R	9585435	2R_9585435_SNP [dm3] 2R_13697930_SNP [dm6]	C	T	4.097e^-4	0.845	INTRON fas
2R	18120675	2R_18120675_SNP [dm3] 2R_22233170_SNP [dm6]	G	T	4.101e^-4	0.845	INTERGENIC
2L	8048761	2L_8048761_SNP [dm3] 2L_8048761_SNP [dm6]	C	T	4.101e^-4	0.845	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2R	14221057	2R_14221057_SNP [dm3] 2R_18333552_SNP [dm6]	C	G	4.108e^-4	0.845	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1252442	3L_1252442_SNP [dm3] 3L_1252442_SNP [dm6]	T	G	4.112e^-4	0.845	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	25506690	3R_25506690_SNP [dm3] 3R_29680968_SNP [dm6]	G	C	4.119e^-4	0.845	SYNONYMOUS_CODING CG7582 DOWNSTREAM Cap-D2	TF binding site mE1_TFBS_cad
3R	14419326	3R_14419326_SNP [dm3] 3R_18593604_SNP [dm6]	A	T	4.120e^-4	0.845	INTRON qin & 1 other
2R	18150920	2R_18150920_SNP [dm3] 2R_22263415_SNP [dm6]	A	G	4.122e^-4	0.845	SYNONYMOUS_CODING dve
3R	5931968	3R_5931968_DEL [dm3] 3R_10106246_DEL [dm6]	AACA	A	4.128e^-4	0.845	INTRON Fmr1	TF binding site mE1_TFBS_cad
2L	1139513	2L_1139513_SNP [dm3] 2L_1139513_SNP [dm6]	C	T	4.128e^-4	0.845	SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18424800	2L_18424800_SNP [dm3] 2L_18424800_SNP [dm6]	G	T	4.134e^-4	0.845	INTERGENIC
3R	18302889	3R_18302889_SNP [dm3] 3R_22477167_SNP [dm6]	G	A	4.147e^-4	0.845	INTRON Nrx-1
2L	16332240	2L_16332240_SNP [dm3] 2L_16332240_SNP [dm6]	A	T	4.150e^-4	0.845	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3R	9880523	3R_9880523_SNP [dm3] 3R_14054801_SNP [dm6]	A	T	4.155e^-4	0.845	INTERGENIC
X	12653644	X_12653644_SNP [dm3] X_12759611_SNP [dm6]	T	C	4.164e^-4	0.845	SPLICE_SITE_REGION ade5 INTRON ade5
3L	16873365	3L_16873365_SNP [dm3] 3L_16880265_SNP [dm6]	C	G	4.167e^-4	0.845	DOWNSTREAM CG32170 INTRON Lmpt
3R	24247650	3R_24247650_SNP [dm3] 3R_28421928_SNP [dm6]	A	G	4.168e^-4	0.845	INTRON beat-VI
X	20751410	X_20751410_SNP [dm3] X_20880383_SNP [dm6]	A	C	4.193e^-4	0.845	INTRON shakB	transposable element FlyBase
2L	2240515	2L_2240515_SNP [dm3] 2L_2240515_SNP [dm6]	T	C	4.197e^-4	0.845	UTR_5_PRIME Tengl1
2L	10639634	2L_10639634_SNP [dm3] 2L_10639634_SNP [dm6]	T	C	4.198e^-4	0.845	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
3L	6807543	3L_6807543_SNP [dm3] 3L_6814443_SNP [dm6]	C	G	4.199e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	13870023	3L_13870023_SNP [dm3] 3L_13876923_SNP [dm6]	T	A	4.211e^-4	0.845	INTRON dysc
X	2366936	X_2366936_SNP [dm3] X_2472903_SNP [dm6]	G	A	4.220e^-4	0.845	INTRON trol	TF binding site mE1_TFBS_HSA
3R	18725265	3R_18725265_SNP [dm3] 3R_22899543_SNP [dm6]	A	C	4.227e^-4	0.845	UTR_5_PRIME klg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12131584	2R_12131584_SNP [dm3] 2R_16244079_SNP [dm6]	A	G	4.228e^-4	0.845	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_inv
3L	11354952	3L_11354952_SNP [dm3] 3L_11361852_SNP [dm6]	C	T	4.230e^-4	0.845	DOWNSTREAM CG6163 INTERGENIC
2L	6515797	2L_6515797_DEL [dm3] 2L_6515797_DEL [dm6]	AA	G	4.231e^-4	0.845	INTRON CG31637
3L	1630271	3L_1630271_SNP [dm3] 3L_1630271_SNP [dm6]	G	A	4.231e^-4	0.845	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
3R	18023114	3R_18023114_SNP [dm3] 3R_22197392_SNP [dm6]	G	A	4.234e^-4	0.845	INTRON SKIP & 1 other	TF binding site mE1_TFBS_cad
2L	11447052	2L_11447052_SNP [dm3] 2L_11447052_SNP [dm6]	T	C	4.237e^-4	0.845	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7316285	3L_7316285_SNP [dm3] 3L_7323185_SNP [dm6]	A	G	4.246e^-4	0.845	SYNONYMOUS_CODING RhoGEF4 UPSTREAM Rint1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	8137252	3L_8137252_SNP [dm3] 3L_8144152_SNP [dm6]	G	A	4.247e^-4	0.845	SYNONYMOUS_CODING CG13676	TF binding site mE1_TFBS_cad
2L	4455051	2L_4455051_SNP [dm3] 2L_4455051_SNP [dm6]	C	T	4.249e^-4	0.845	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16797926	2L_16797926_DEL [dm3] 2L_16797926_DEL [dm6]	GAGC	G	4.281e^-4	0.845
3R	13415021	3R_13415021_SNP [dm3] 3R_17589299_SNP [dm6]	A	C	4.282e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	8929521	2R_8929521_SNP [dm3] 2R_13042016_SNP [dm6]	C	T	4.292e^-4	0.845	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	19123750	3R_19123750_SNP [dm3] 3R_23298028_SNP [dm6]	G	T	4.293e^-4	0.845	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	15182873	X_15182873_SNP [dm3] X_15288840_SNP [dm6]	T	C	4.294e^-4	0.845	UPSTREAM CR44663 INTERGENIC
3R	16720638	3R_16720638_INS [dm3] 3R_20894916_INS [dm6]	T	TCT	4.297e^-4	0.845	UTR_3_PRIME CG10830
3L	15472436	3L_15472436_SNP [dm3] 3L_15479336_SNP [dm6]	C	G	4.307e^-4	0.845	INTERGENIC
3L	13468804	3L_13468804_SNP [dm3] 3L_13475704_SNP [dm6]	A	T	4.309e^-4	0.845	UPSTREAM CG10089 INTERGENIC
2R	12125136	2R_12125136_SNP [dm3] 2R_16237631_SNP [dm6]	C	A	4.314e^-4	0.845	DOWNSTREAM krimp & 1 other INTERGENIC
2L	13747396	2L_13747396_SNP [dm3] 2L_13747396_SNP [dm6]	G	A	4.318e^-4	0.845	DOWNSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other	TF binding site mE1_TFBS_inv
3L	11161190	3L_11161190_SNP [dm3] 3L_11168090_SNP [dm6]	A	G	4.318e^-4	0.845	INTRON wls	TF binding site BDTNP1_TFBS_twi
2R	14664003	2R_14664003_SNP [dm3] 2R_18776498_SNP [dm6]	G	T	4.331e^-4	0.845	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12715000	3R_12715000_SNP [dm3] 3R_16889278_SNP [dm6]	G	A	4.339e^-4	0.845	INTRON iab-8
2R	12637720	2R_12637720_SNP [dm3] 2R_16750215_SNP [dm6]	A	G	4.340e^-4	0.845	UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c INTRON Acp53Ea
3L	8672398	3L_8672398_SNP [dm3] 3L_8679298_SNP [dm6]	C	T	4.341e^-4	0.845	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
3R	26302225	3R_26302225_DEL [dm3] 3R_30476503_DEL [dm6]	GGT	G	4.348e^-4	0.845	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	4.348e^-4	0.845	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	4.353e^-4	0.845	INTRON aret
3L	12838825	3L_12838825_SNP [dm3] 3L_12845725_SNP [dm6]	T	G	4.353e^-4	0.845	INTRON CG10948
2L	10374114	2L_10374114_SNP [dm3] 2L_10374114_SNP [dm6]	C	A	4.356e^-4	0.845	UTR_3_PRIME CG33303 UPSTREAM rho-5 DOWNSTREAM CG33303
2L	20472282	2L_20472282_SNP [dm3] 2L_20472282_SNP [dm6]	G	A	4.360e^-4	0.845	DOWNSTREAM CG43233 INTRON CR44980
3R	23635652	3R_23635652_SNP [dm3] 3R_27809930_SNP [dm6]	C	T	4.361e^-4	0.845	INTRON CG34353
2L	14899646	2L_14899646_SNP [dm3] 2L_14899646_SNP [dm6]	A	G	4.363e^-4	0.845	INTERGENIC
2R	18827281	2R_18827281_SNP [dm3] 2R_22939758_SNP [dm6]	G	T	4.372e^-4	0.845	SYNONYMOUS_CODING CG3831 DOWNSTREAM CG9849
2L	9155587	2L_9155587_SNP [dm3] 2L_9155587_SNP [dm6]	G	A	4.374e^-4	0.845	INTRON CG32982
X	20477829	X_20477829_SNP [dm3] X_20606802_SNP [dm6]	T	C	4.375e^-4	0.845	INTRON RunxA
2R	9487565	2R_9487565_SNP [dm3] 2R_13600060_SNP [dm6]	A	G	4.392e^-4	0.845	DOWNSTREAM CG43058 INTERGENIC
2R	8341093	2R_8341093_SNP [dm3] 2R_12453588_SNP [dm6]	A	G	4.401e^-4	0.845	SYNONYMOUS_CODING Lac DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11341746	3L_11341746_SNP [dm3] 3L_11348646_SNP [dm6]	A	T	4.402e^-4	0.845	DOWNSTREAM CR45251 INTERGENIC
3R	3984806	3R_3984806_SNP [dm3] 3R_8159084_SNP [dm6]	T	C	4.403e^-4	0.845	INTRON grn
3L	23888853	3L_23888853_SNP [dm3] 3L_23895753_SNP [dm6]	T	C	4.404e^-4	0.845	INTRON CG40470
3R	10775844	3R_10775844_SNP [dm3] 3R_14950122_SNP [dm6]	G	A	4.406e^-4	0.845	INTERGENIC
2R	6890468	2R_6890468_SNP [dm3] 2R_11002963_SNP [dm6]	G	T	4.410e^-4	0.845	INTRON luna
2L	1039879	2L_1039879_SNP [dm3] 2L_1039879_SNP [dm6]	G	T	4.415e^-4	0.845	INTRON IA-2	TF binding site mE1_TFBS_chinmo
3L	3717941	3L_3717941_SNP [dm3] 3L_3717941_SNP [dm6]	A	T	4.423e^-4	0.845	INTRON CG32264
X	11099798	X_11099798_SNP [dm3] X_11205765_SNP [dm6]	C	T	4.423e^-4	0.845	INTERGENIC
3L	1856053	3L_1856053_INS [dm3] 3L_1856053_INS [dm6]	A	ACTAAATAATGGTTGGGCA...	4.448e^-4	0.845	UPSTREAM CG13936 INTERGENIC
2R	18503171	2R_18503171_INS [dm3] 2R_22615666_INS [dm6]	T	TGC	4.449e^-4	0.845	INTRON CG33143
3L	5338050	3L_5338050_SNP [dm3] 3L_5344950_SNP [dm6]	C	T	4.449e^-4	0.845	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10741957	X_10741957_SNP [dm3] X_10847924_SNP [dm6]	G	A	4.458e^-4	0.845	SYNONYMOUS_CODING CG17333 UPSTREAM sbr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	6646661	X_6646661_SNP [dm3] X_6752628_SNP [dm6]	C	G	4.463e^-4	0.845	INTRON CG14439
3L	16483145	3L_16483145_SNP [dm3] 3L_16490045_SNP [dm6]	C	T	4.466e^-4	0.845	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	2309065	X_2309065_SNP [dm3] X_2415032_SNP [dm6]	A	T	4.470e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24907298	3R_24907298_SNP [dm3] 3R_29081576_SNP [dm6]	A	T	4.481e^-4	0.845	INTRON CG11873
2L	1113119	2L_1113119_SNP [dm3] 2L_1113119_SNP [dm6]	G	C	4.487e^-4	0.845	SYNONYMOUS_CODING CG14340 DOWNSTREAM CG14339
3R	18701583	3R_18701583_SNP [dm3] 3R_22875861_SNP [dm6]	G	C	4.492e^-4	0.845	INTERGENIC
2R	7471171	2R_7471171_SNP [dm3] 2R_11583666_SNP [dm6]	C	T	4.494e^-4	0.845	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14841173	X_14841173_SNP [dm3] X_14947140_SNP [dm6]	G	A	4.501e^-4	0.845	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
X	12163597	X_12163597_DEL [dm3] X_12269564_DEL [dm6]	TCC	T	4.503e^-4	0.845	INTRON Ten-a
X	13960185	X_13960185_SNP [dm3] X_14066152_SNP [dm6]	T	A	4.504e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	4.508e^-4	0.845	INTRON Mhc
3R	17841947	3R_17841947_SNP [dm3] 3R_22016225_SNP [dm6]	G	T	4.530e^-4	0.845	DOWNSTREAM CG6439 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	15346749	2R_15346749_SNP [dm3] 2R_19459244_SNP [dm6]	A	T	4.543e^-4	0.845	UTR_3_PRIME mei-W68 INTRON par-1
3L	15918257	3L_15918257_INS [dm3] 3L_15925157_INS [dm6]	A	AATTTGTATCGAG...	4.545e^-4	0.845	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4830221	2R_4830221_SNP [dm3] 2R_8942716_SNP [dm6]	G	A	4.549e^-4	0.845	UPSTREAM CR44274 DOWNSTREAM CR44273 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25562625	3R_25562625_SNP [dm3] 3R_29736903_SNP [dm6]	G	T	4.550e^-4	0.845	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3381635	2L_3381635_SNP [dm3] 2L_3381635_SNP [dm6]	A	T	4.552e^-4	0.845	INTERGENIC
3R	24464441	3R_24464441_SNP [dm3] 3R_28638719_SNP [dm6]	A	T	4.558e^-4	0.845	UTR_3_PRIME CG9988
2R	18155869	2R_18155869_SNP [dm3] 2R_22268364_SNP [dm6]	G	A	4.560e^-4	0.845	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11619123	2R_11619123_SNP [dm3] 2R_15731618_SNP [dm6]	G	A	4.562e^-4	0.845	INTRON CG30089
3L	11344796	3L_11344796_SNP [dm3] 3L_11351696_SNP [dm6]	T	A	4.562e^-4	0.845	INTERGENIC

By genomic position
Variant impact
Gene name

mn_PhototaxisScor_2w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results