DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.806e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.04471

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1938 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10462389	3L_10462389_SNP [dm3] 3L_10469289_SNP [dm6]	G	A	1.152e^-6	0.951	DOWNSTREAM S-Lap3 INTERGENIC
3R	13005783	3R_13005783_SNP [dm3] 3R_17180061_SNP [dm6]	C	T	2.822e^-6	0.951	INTRON Mur89F
2L	2703016	2L_2703016_SNP [dm3] 2L_2703016_SNP [dm6]	T	C	3.279e^-6	0.951	INTRON CG31690
2L	17937738	2L_17937738_SNP [dm3] 2L_17937738_SNP [dm6]	C	T	3.745e^-6	0.951	INTERGENIC
2L	5443208	2L_5443208_SNP [dm3] 2L_5443208_SNP [dm6]	A	C	3.799e^-6	0.951	INTERGENIC
2L	5443152	2L_5443152_SNP [dm3] 2L_5443152_SNP [dm6]	C	T	3.907e^-6	0.951	INTERGENIC
2L	5443170	2L_5443170_SNP [dm3] 2L_5443170_SNP [dm6]	G	C	4.151e^-6	0.951	INTERGENIC
X	2756022	X_2756022_SNP [dm3] X_2861989_SNP [dm6]	T	G	5.098e^-6	0.951	INTRON kirre
3L	7732936	3L_7732936_SNP [dm3] 3L_7739836_SNP [dm6]	C	T	6.019e^-6	0.951	INTRON CG32373 & 1 other
2L	5443150	2L_5443150_SNP [dm3] 2L_5443150_SNP [dm6]	C	G	8.606e^-6	0.951	INTERGENIC
2R	19266285	2R_19266285_SNP [dm3] 2R_23378762_SNP [dm6]	C	G	1.008e^-5	0.951	UTR_5_PRIME yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16641316	2R_16641316_SNP [dm3] 2R_20753811_SNP [dm6]	A	C	1.195e^-5	0.951	DOWNSTREAM CG34202 INTERGENIC	TF binding site mE1_TFBS_cad
3R	22269772	3R_22269772_SNP [dm3] 3R_26444050_SNP [dm6]	C	T	1.295e^-5	0.951	INTRON tx
3L	12556601	3L_12556601_SNP [dm3] 3L_12563501_SNP [dm6]	C	T	1.370e^-5	0.951	INTRON sowah
2L	16918193	2L_16918193_SNP [dm3] 2L_16918193_SNP [dm6]	T	G	1.421e^-5	0.951	INTERGENIC
3L	12556687	3L_12556687_SNP [dm3] 3L_12563587_SNP [dm6]	T	C	1.517e^-5	0.951	INTRON sowah
2L	14475122	2L_14475122_SNP [dm3] 2L_14475122_SNP [dm6]	C	A	1.774e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	27533915	3R_27533915_SNP [dm3] 3R_31708193_SNP [dm6]	A	G	1.808e^-5	0.951	INTRON CG42693
2L	6114848	2L_6114848_DEL [dm3] 2L_6114848_DEL [dm6]	CC	C	1.822e^-5	0.951	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	16934145	2R_16934145_SNP [dm3] 2R_21046640_SNP [dm6]	A	T	1.863e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7010993	2L_7010993_SNP [dm3] 2L_7010993_SNP [dm6]	G	T	1.914e^-5	0.951	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17937737	2L_17937737_SNP [dm3] 2L_17937737_SNP [dm6]	A	T	1.935e^-5	0.951	INTERGENIC
3R	26431528	3R_26431528_DEL [dm3] 3R_30605806_DEL [dm6]	AATCTTAATGGCGACA...	A	2.035e^-5	0.951	UPSTREAM CG31016
2R	1412432	2R_1412432_SNP [dm3] 2R_5524927_SNP [dm6]	A	G	2.074e^-5	0.951	UTR_5_PRIME CG30438 INTRON CG30438
3R	26617078	3R_26617078_SNP [dm3] 3R_30791356_SNP [dm6]	G	C	2.187e^-5	0.951	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
2R	2435852	2R_2435852_SNP [dm3] 2R_6548347_SNP [dm6]	A	C	2.203e^-5	0.951	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	6114863	2L_6114863_SNP [dm3] 2L_6114863_SNP [dm6]	C	T	2.246e^-5	0.951	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	13005781	3R_13005781_SNP [dm3] 3R_17180059_SNP [dm6]	C	T	2.279e^-5	0.951	INTRON Mur89F
2R	17177217	2R_17177217_SNP [dm3] 2R_21289712_SNP [dm6]	G	A	2.469e^-5	0.951	SYNONYMOUS_CODING CG10505
2L	4891434	2L_4891434_SNP [dm3] 2L_4891434_SNP [dm6]	T	C	2.556e^-5	0.951	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14229560	3L_14229560_SNP [dm3] 3L_14236460_SNP [dm6]	A	G	2.557e^-5	0.951	UPSTREAM CG7906 & 1 other INTERGENIC
3L	11566388	3L_11566388_SNP [dm3] 3L_11573288_SNP [dm6]	G	T	2.610e^-5	0.951	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
2L	14475049	2L_14475049_SNP [dm3] 2L_14475049_SNP [dm6]	A	T	2.640e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16392616	2R_16392616_SNP [dm3] 2R_20505111_SNP [dm6]	G	T	2.679e^-5	0.951	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c & 2 others	regulatory region REDfly_CRMs
2L	5443190	2L_5443190_SNP [dm3] 2L_5443190_SNP [dm6]	A	C	2.713e^-5	0.951	INTERGENIC
3L	9683653	3L_9683653_SNP [dm3] 3L_9690553_SNP [dm6]	G	A	2.752e^-5	0.951	INTRON CG6767
2R	3317562	2R_3317562_SNP [dm3] 2R_7430057_SNP [dm6]	T	C	2.860e^-5	0.951	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2L	5443336	2L_5443336_SNP [dm3] 2L_5443336_SNP [dm6]	A	C	2.935e^-5	0.951	INTERGENIC
X	4479624	X_4479624_SNP [dm3] X_4585591_SNP [dm6]	C	G	2.975e^-5	0.951	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	4006650	3L_4006650_SNP [dm3] 3L_4006650_SNP [dm6]	A	C	2.990e^-5	0.951	DOWNSTREAM CG14985 INTERGENIC
2L	3890853	2L_3890853_SNP [dm3] 2L_3890853_SNP [dm6]	C	A	3.125e^-5	0.951	UPSTREAM capu INTRON capu
2L	5443073	2L_5443073_SNP [dm3] 2L_5443073_SNP [dm6]	G	C	3.266e^-5	0.951	INTERGENIC
3R	10542306	3R_10542306_SNP [dm3] 3R_14716584_SNP [dm6]	T	C	3.396e^-5	0.951	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16928472	2L_16928472_SNP [dm3] 2L_16928472_SNP [dm6]	A	T	3.426e^-5	0.951	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6139911	2L_6139911_SNP [dm3] 2L_6139911_SNP [dm6]	T	C	3.482e^-5	0.951	SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9336093	3L_9336093_SNP [dm3] 3L_9342993_SNP [dm6]	T	C	3.543e^-5	0.951	SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad
2L	16864412	2L_16864412_SNP [dm3] 2L_16864412_SNP [dm6]	A	G	3.577e^-5	0.951	INTERGENIC
3R	22271116	3R_22271116_SNP [dm3] 3R_26445394_SNP [dm6]	G	A	3.645e^-5	0.951	INTRON tx
2L	5443207	2L_5443207_SNP [dm3] 2L_5443207_SNP [dm6]	T	C	3.654e^-5	0.951	INTERGENIC
3R	27463716	3R_27463716_SNP [dm3] 3R_31637994_SNP [dm6]	T	C	3.738e^-5	0.951	INTRON kek6
2L	1369278	2L_1369278_SNP [dm3] 2L_1369278_SNP [dm6]	T	C	3.785e^-5	0.951	DOWNSTREAM CG14346 INTERGENIC
3L	15767820	3L_15767820_SNP [dm3] 3L_15774720_SNP [dm6]	G	C	3.794e^-5	0.951	INTERGENIC
2R	16338374	2R_16338374_SNP [dm3] 2R_20450869_SNP [dm6]	T	A	3.822e^-5	0.951	INTRON CG12484
2R	18536634	2R_18536634_SNP [dm3] 2R_22649129_SNP [dm6]	T	C	3.837e^-5	0.951	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11236404	3L_11236404_SNP [dm3] 3L_11243304_SNP [dm6]	T	C	3.877e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19113981	2R_19113981_SNP [dm3] 2R_23226458_SNP [dm6]	A	G	3.881e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17339226	2R_17339226_DEL [dm3] 2R_21451721_DEL [dm6]	AAT	A	3.941e^-5	0.951	INTRON Sdc
3L	10330853	3L_10330853_SNP [dm3] 3L_10337753_SNP [dm6]	A	G	4.094e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1580336	3L_1580336_SNP [dm3] 3L_1580336_SNP [dm6]	G	A	4.204e^-5	0.951	INTRON CG13917
2L	2728417	2L_2728417_SNP [dm3] 2L_2728417_SNP [dm6]	C	T	4.210e^-5	0.951	INTRON CG31689
3R	26617154	3R_26617154_SNP [dm3] 3R_30791432_SNP [dm6]	G	A	4.214e^-5	0.951	SPLICE_SITE_REGION wts DOWNSTREAM mir-1013 INTRON wts
2L	14475046	2L_14475046_SNP [dm3] 2L_14475046_SNP [dm6]	C	G	4.228e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	13350726	X_13350726_SNP [dm3] X_13456693_SNP [dm6]	C	T	4.233e^-5	0.951	UTR_3_PRIME CG34324 INTRON Neto
3L	8268718	3L_8268718_SNP [dm3] 3L_8275618_SNP [dm6]	C	T	4.235e^-5	0.951	SYNONYMOUS_CODING Dscam4
2L	15280740	2L_15280740_SNP [dm3] 2L_15280740_SNP [dm6]	T	C	4.279e^-5	0.951	DOWNSTREAM CR45349 INTERGENIC
2L	14335273	2L_14335273_SNP [dm3] 2L_14335273_SNP [dm6]	T	G	4.301e^-5	0.951	INTRON CG33090
2L	12297003	2L_12297003_INS [dm3] 2L_12297003_INS [dm6]	T	TACCGAGTGGCAAGT...	4.387e^-5	0.951	INTRON aret
3R	18456921	3R_18456921_SNP [dm3] 3R_22631199_SNP [dm6]	A	G	4.406e^-5	0.951	DOWNSTREAM CR43474 INTRON loco	regulatory region REDfly_CRMs
2R	16137693	2R_16137693_SNP [dm3] 2R_20250188_SNP [dm6]	T	A	4.414e^-5	0.951	INTRON CG9864	TF binding site mE1_TFBS_cad
3R	22477451	3R_22477451_SNP [dm3] 3R_26651729_SNP [dm6]	G	A	4.441e^-5	0.951	INTRON beat-VII
3R	4950724	3R_4950724_SNP [dm3] 3R_9125002_SNP [dm6]	A	G	4.453e^-5	0.951	INTRON pum
2L	16855059	2L_16855059_INS [dm3] 2L_16855059_INS [dm6]	A	AAGCCCAAC	4.548e^-5	0.951	INTRON CG31809	transposable element FlyBase
2L	14475124	2L_14475124_SNP [dm3] 2L_14475124_SNP [dm6]	A	T	4.622e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3890893	2L_3890893_SNP [dm3] 2L_3890893_SNP [dm6]	G	T	4.637e^-5	0.951	UPSTREAM capu INTRON capu
2L	14475126	2L_14475126_SNP [dm3] 2L_14475126_SNP [dm6]	A	T	4.640e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8507563	3L_8507563_SNP [dm3] 3L_8514463_SNP [dm6]	C	T	4.656e^-5	0.951	SYNONYMOUS_CODING CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	2797213	2R_2797213_SNP [dm3] 2R_6909708_SNP [dm6]	C	A	4.747e^-5	0.951	INTRON CG30158
2L	18016035	2L_18016035_SNP [dm3] 2L_18016035_SNP [dm6]	A	C	4.750e^-5	0.951	INTRON rdo
3L	3928597	3L_3928597_DEL [dm3] 3L_3928597_DEL [dm6]	AAAGATATAT	A	4.776e^-5	0.951	INTRON Eip63F-1
X	12742472	X_12742472_SNP [dm3] X_12848439_SNP [dm6]	T	C	4.826e^-5	0.951	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13337390	2L_13337390_SNP [dm3] 2L_13337390_SNP [dm6]	C	T	4.836e^-5	0.951	INTERGENIC
2L	14475045	2L_14475045_SNP [dm3] 2L_14475045_SNP [dm6]	G	A	4.839e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	2829535	2L_2829535_SNP [dm3] 2L_2829535_SNP [dm6]	T	A	5.105e^-5	0.951	INTRON Duox	TF binding site BDTNP1_TFBS_dl
3R	12035800	3R_12035800_SNP [dm3] 3R_16210078_SNP [dm6]	T	C	5.237e^-5	0.951	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
3R	6897768	3R_6897768_SNP [dm3] 3R_11072046_SNP [dm6]	A	C	5.414e^-5	0.951	INTERGENIC
X	5516601	X_5516601_SNP [dm3] X_5622568_SNP [dm6]	C	A	5.423e^-5	0.951	UPSTREAM l_1_G0045 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	17345258	2R_17345258_SNP [dm3] 2R_21457753_SNP [dm6]	G	A	5.522e^-5	0.951	INTRON Sdc
3L	7732844	3L_7732844_SNP [dm3] 3L_7739744_SNP [dm6]	C	A	5.547e^-5	0.951	INTRON CG32373 & 1 other
X	12742526	X_12742526_SNP [dm3] X_12848493_SNP [dm6]	A	C	5.624e^-5	0.951	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4006615	3L_4006615_SNP [dm3] 3L_4006615_SNP [dm6]	G	T	5.670e^-5	0.951	UTR_3_PRIME CG14985
2L	15237681	2L_15237681_SNP [dm3] 2L_15237681_SNP [dm6]	A	G	5.683e^-5	0.951	INTRON ZnT35C
2L	14475040	2L_14475040_SNP [dm3] 2L_14475040_SNP [dm6]	A	T	5.709e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	17227969	3R_17227969_SNP [dm3] 3R_21402247_SNP [dm6]	A	G	5.710e^-5	0.951	UTR_3_PRIME CG43311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	5.745e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	5.745e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16137691	2R_16137691_SNP [dm3] 2R_20250186_SNP [dm6]	C	T	5.780e^-5	0.951	INTRON CG9864	TF binding site mE1_TFBS_cad
2L	7301462	2L_7301462_DEL [dm3] 2L_7301462_DEL [dm6]	TGCCACGATAAG...	T	5.798e^-5	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12027705	2R_12027705_SNP [dm3] 2R_16140200_SNP [dm6]	T	C	5.870e^-5	0.951	INTRON Got1
3R	20319245	3R_20319245_DEL [dm3] 3R_24493523_DEL [dm6]	TT	T	5.942e^-5	0.951	INTERGENIC
2R	17203991	2R_17203991_SNP [dm3] 2R_21316486_SNP [dm6]	C	G	6.175e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.682e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0165

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.5453	0.0597

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1723 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	17572489	3L_17572489_SNP [dm3] 3L_17579389_SNP [dm6]	G	A	5.589e^-7	1	INTRON Eip74EF
3L	2587721	3L_2587721_SNP [dm3] 3L_2587721_SNP [dm6]	G	T	2.333e^-6	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	2587731	3L_2587731_SNP [dm3] 3L_2587731_SNP [dm6]	C	A	2.828e^-6	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	18230498	X_18230498_SNP [dm3] X_18336465_SNP [dm6]	G	A	4.432e^-6	1	INTRON CG6123
3L	17572491	3L_17572491_SNP [dm3] 3L_17579391_SNP [dm6]	A	G	5.267e^-6	1	INTRON Eip74EF
2R	20210093	2R_20210093_SNP [dm3] 2R_24322570_SNP [dm6]	A	T	5.322e^-6	1	INTERGENIC
3L	12858005	3L_12858005_SNP [dm3] 3L_12864905_SNP [dm6]	A	G	5.897e^-6	1	INTERGENIC
2R	20210067	2R_20210067_INS [dm3] 2R_24322544_INS [dm6]	T	TGAGT	6.138e^-6	1	INTERGENIC
X	5033505	X_5033505_SNP [dm3] X_5139472_SNP [dm6]	A	G	7.411e^-6	1	INTRON rg & 1 other
2L	4370469	2L_4370469_SNP [dm3] 2L_4370469_SNP [dm6]	T	A	8.238e^-6	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4370480	2L_4370480_SNP [dm3] 2L_4370480_SNP [dm6]	A	T	8.894e^-6	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15932954	3L_15932954_DEL [dm3] 3L_15939854_DEL [dm6]	AA	A	9.707e^-6	1	INTRON Pka-C3
3L	17565674	3L_17565674_SNP [dm3] 3L_17572574_SNP [dm6]	A	G	1.001e^-5	1	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8718951	3R_8718951_SNP [dm3] 3R_12893229_SNP [dm6]	A	T	1.126e^-5	1	UPSTREAM CR44235 DOWNSTREAM CR33929 & 1 other INTERGENIC
3R	3260702	3R_3260702_SNP [dm3] 3R_7434980_SNP [dm6]	T	G	1.226e^-5	1	INTERGENIC
2R	20210916	2R_20210916_SNP [dm3] 2R_24323393_SNP [dm6]	G	T	1.276e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20211883	2R_20211883_SNP [dm3] 2R_24324360_SNP [dm6]	A	G	1.276e^-5	1	UPSTREAM CR44810 INTERGENIC
2R	20210915	2R_20210915_SNP [dm3] 2R_24323392_SNP [dm6]	G	T	1.357e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5929862	3L_5929862_SNP [dm3] 3L_5936762_SNP [dm6]	A	T	1.442e^-5	1	INTRON CG33993
2R	12350872	2R_12350872_INS [dm3] 2R_16463367_INS [dm6]	A	ACA	1.464e^-5	1	INTERGENIC
3L	16949758	3L_16949758_SNP [dm3] 3L_16956658_SNP [dm6]	A	T	1.490e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15075317	2L_15075317_SNP [dm3] 2L_15075317_SNP [dm6]	A	G	1.525e^-5	1	UTR_5_PRIME CG15270 DOWNSTREAM vas INTRON CG15270
2L	4790845	2L_4790845_SNP [dm3] 2L_4790845_SNP [dm6]	C	A	1.563e^-5	1	INTRON CG15630
2L	4014567	2L_4014567_SNP [dm3] 2L_4014567_SNP [dm6]	G	T	1.814e^-5	1	INTERGENIC
2L	4370397	2L_4370397_SNP [dm3] 2L_4370397_SNP [dm6]	C	T	1.836e^-5	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14253153	X_14253153_SNP [dm3] X_14359120_SNP [dm6]	C	T	1.869e^-5	1	INTRON dpr8
2L	12288791	2L_12288791_SNP [dm3] 2L_12288791_SNP [dm6]	C	T	1.870e^-5	1	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4787929	3L_4787929_SNP [dm3] 3L_4787929_SNP [dm6]	G	A	1.915e^-5	1	INTRON RhoGEF64C
3L	17560865	3L_17560865_SNP [dm3] 3L_17567765_SNP [dm6]	T	G	1.931e^-5	1	INTRON Eip74EF
3L	17561048	3L_17561048_SNP [dm3] 3L_17567948_SNP [dm6]	A	G	1.931e^-5	1	INTRON Eip74EF
3R	25918529	3R_25918529_SNP [dm3] 3R_30092807_SNP [dm6]	T	A	2.058e^-5	1	INTRON sima
X	9384325	X_9384325_SNP [dm3] X_9490292_SNP [dm6]	G	A	2.080e^-5	1	INTRON mgl
3R	10264592	3R_10264592_SNP [dm3] 3R_14438870_SNP [dm6]	G	C	2.102e^-5	1	INTRON cv-c
3L	3042258	3L_3042258_SNP [dm3] 3L_3042258_SNP [dm6]	C	T	2.173e^-5	1	UPSTREAM Jafrac2 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	10136834	2L_10136834_SNP [dm3] 2L_10136834_SNP [dm6]	A	G	2.189e^-5	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad
3L	15932981	3L_15932981_SNP [dm3] 3L_15939881_SNP [dm6]	C	T	2.339e^-5	1	INTRON Pka-C3
2R	16119990	2R_16119990_SNP [dm3] 2R_20232485_SNP [dm6]	C	A	2.344e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
2L	15071588	2L_15071588_SNP [dm3] 2L_15071588_SNP [dm6]	G	A	2.417e^-5	1	NON_SYNONYMOUS_CODING vas INTRON vas
2L	3286071	2L_3286071_SNP [dm3] 2L_3286071_SNP [dm6]	G	T	2.445e^-5	1	INTERGENIC
2L	15078649	2L_15078649_SNP [dm3] 2L_15078649_SNP [dm6]	C	T	2.528e^-5	1	INTRON CG15270	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17194837	3L_17194837_SNP [dm3] 3L_17201737_SNP [dm6]	T	C	2.529e^-5	1	INTRON Rbp6
3R	25135918	3R_25135918_SNP [dm3] 3R_29310196_SNP [dm6]	T	C	2.532e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	3042624	3L_3042624_SNP [dm3] 3L_3042624_SNP [dm6]	C	T	2.576e^-5	1	UTR_5_PRIME Jafrac2 UPSTREAM Jafrac2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4387017	3L_4387017_SNP [dm3] 3L_4387017_SNP [dm6]	G	A	2.625e^-5	1	INTRON slow
3R	15179279	3R_15179279_SNP [dm3] 3R_19353557_SNP [dm6]	C	T	2.652e^-5	1	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	1225312	X_1225312_SNP [dm3] X_1331279_SNP [dm6]	T	C	2.677e^-5	1	SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
X	6355190	X_6355190_SNP [dm3] X_6461157_SNP [dm6]	A	T	2.679e^-5	1	INTRON CG42340
X	18231327	X_18231327_SNP [dm3] X_18337294_SNP [dm6]	G	A	2.713e^-5	1	INTRON CG6123
3L	1071517	3L_1071517_SNP [dm3] 3L_1071517_SNP [dm6]	A	T	2.721e^-5	1	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	14768754	X_14768754_SNP [dm3] X_14874721_SNP [dm6]	C	T	2.967e^-5	1	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	12317100	2L_12317100_DEL [dm3] 2L_12317100_DEL [dm6]	GGGATACT	A	3.001e^-5	1	UPSTREAM CR45282 & 1 other EXON CR45283
2L	15066697	2L_15066697_SNP [dm3] 2L_15066697_SNP [dm6]	T	C	3.098e^-5	1	INTRON vas & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18880859	3R_18880859_SNP [dm3] 3R_23055137_SNP [dm6]	A	G	3.262e^-5	1	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_twi
3L	11047405	3L_11047405_SNP [dm3] 3L_11054305_SNP [dm6]	C	A	3.300e^-5	1	UTR_5_PRIME CG7888
2L	3286187	2L_3286187_DEL [dm3] 2L_3286187_DEL [dm6]	GGC	G	3.364e^-5	1	INTERGENIC
2L	3286622	2L_3286622_SNP [dm3] 2L_3286622_SNP [dm6]	C	T	3.367e^-5	1	INTERGENIC
2L	3286098	2L_3286098_SNP [dm3] 2L_3286098_SNP [dm6]	A	T	3.375e^-5	1	INTERGENIC
3L	17499101	3L_17499101_SNP [dm3] 3L_17506001_SNP [dm6]	C	A	3.470e^-5	1	INTRON Oatp74D
3L	9421972	3L_9421972_SNP [dm3] 3L_9428872_SNP [dm6]	T	A	3.541e^-5	1	UTR_3_PRIME RpS17 DOWNSTREAM snoRNA:Psi28S-612 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	9976654	2R_9976654_SNP [dm3] 2R_14089149_SNP [dm6]	A	G	3.551e^-5	1	INTRON Prosap
2R	18331619	2R_18331619_SNP [dm3] 2R_22444114_SNP [dm6]	A	G	3.565e^-5	1	INTERGENIC
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	3.582e^-5	1	INTRON CG33970
3L	2587646	3L_2587646_SNP [dm3] 3L_2587646_SNP [dm6]	C	A	3.616e^-5	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	25271787	3R_25271787_SNP [dm3] 3R_29446065_SNP [dm6]	C	T	3.645e^-5	1	INTRON Ptp99A
X	18136349	X_18136349_INS [dm3] X_18242316_INS [dm6]	G	GG	3.775e^-5	1	INTRON upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14768755	X_14768755_SNP [dm3] X_14874722_SNP [dm6]	G	A	3.903e^-5	1	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	2819880	2R_2819880_SNP [dm3] 2R_6932375_SNP [dm6]	C	T	3.918e^-5	1	SYNONYMOUS_CODING mim INTRON mim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13678723	3R_13678723_INS [dm3] 3R_17853001_INS [dm6]	A	AATATATA	4.028e^-5	1	INTRON tinc
3R	25246383	3R_25246383_SNP [dm3] 3R_29420661_SNP [dm6]	T	A	4.049e^-5	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25135923	3R_25135923_SNP [dm3] 3R_29310201_SNP [dm6]	G	T	4.105e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	2587645	3L_2587645_SNP [dm3] 3L_2587645_SNP [dm6]	T	C	4.141e^-5	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
X	18136382	X_18136382_SNP [dm3] X_18242349_SNP [dm6]	C	G	4.153e^-5	1	INTRON upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	1217514	X_1217514_SNP [dm3] X_1323481_SNP [dm6]	A	T	4.218e^-5	1	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
2R	16119987	2R_16119987_SNP [dm3] 2R_20232482_SNP [dm6]	A	C	4.230e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
2R	12350796	2R_12350796_SNP [dm3] 2R_16463291_SNP [dm6]	T	A	4.243e^-5	1	INTERGENIC
2R	12350792	2R_12350792_SNP [dm3] 2R_16463287_SNP [dm6]	G	C	4.312e^-5	1	INTERGENIC
X	1228561	X_1228561_SNP [dm3] X_1334528_SNP [dm6]	T	G	4.471e^-5	1	INTRON CG11409
2L	4790881	2L_4790881_SNP [dm3] 2L_4790881_SNP [dm6]	A	T	4.493e^-5	1	INTRON CG15630
X	9651693	X_9651693_INS [dm3] X_9757660_INS [dm6]	A	AAA	4.569e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7027993	2R_7027993_SNP [dm3] 2R_11140488_SNP [dm6]	G	A	4.601e^-5	1	INTRON CG13229
3R	25919178	3R_25919178_SNP [dm3] 3R_30093456_SNP [dm6]	A	G	4.707e^-5	1	INTRON sima
3R	14720143	3R_14720143_SNP [dm3] 3R_18894421_SNP [dm6]	T	A	4.715e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	951353	3L_951353_SNP [dm3] 3L_951353_SNP [dm6]	G	A	4.790e^-5	1	INTRON Glut1
3L	16949712	3L_16949712_SNP [dm3] 3L_16956612_SNP [dm6]	C	A	4.968e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16119785	2R_16119785_SNP [dm3] 2R_20232280_SNP [dm6]	C	G	4.978e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
3L	16949701	3L_16949701_SNP [dm3] 3L_16956601_SNP [dm6]	T	C	5.125e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1797568	3L_1797568_SNP [dm3] 3L_1797568_SNP [dm6]	C	T	5.273e^-5	1	SYNONYMOUS_CODING CG12020 DOWNSTREAM Cdc37	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25918087	3R_25918087_SNP [dm3] 3R_30092365_SNP [dm6]	A	G	5.274e^-5	1	INTRON sima
3L	13292549	3L_13292549_SNP [dm3] 3L_13299449_SNP [dm6]	A	G	5.275e^-5	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	14128129	2R_14128129_SNP [dm3] 2R_18240624_SNP [dm6]	T	G	5.363e^-5	1	INTERGENIC
3R	12969360	3R_12969360_SNP [dm3] 3R_17143638_SNP [dm6]	C	A	5.444e^-5	1	DOWNSTREAM m-cup INTERGENIC
X	18126948	X_18126948_SNP [dm3] X_18232915_SNP [dm6]	G	A	5.460e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25917303	3R_25917303_SNP [dm3] 3R_30091581_SNP [dm6]	G	C	5.469e^-5	1	INTRON sima
2R	16119667	2R_16119667_SNP [dm3] 2R_20232162_SNP [dm6]	G	C	5.677e^-5	1	UTR_5_PRIME CG11044 UPSTREAM tRNA:G3:56EFb
2R	5696482	2R_5696482_SNP [dm3] 2R_9808977_SNP [dm6]	C	G	5.680e^-5	1	INTERGENIC
3L	16949643	3L_16949643_SNP [dm3] 3L_16956543_SNP [dm6]	G	T	5.783e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16431300	3R_16431300_SNP [dm3] 3R_20605578_SNP [dm6]	G	A	5.793e^-5	1	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
2R	13902565	2R_13902565_SNP [dm3] 2R_18015060_SNP [dm6]	G	A	5.830e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16119993	2R_16119993_SNP [dm3] 2R_20232488_SNP [dm6]	A	G	5.945e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
3L	2670670	3L_2670670_SNP [dm3] 3L_2670670_SNP [dm6]	G	C	5.990e^-5	1	UTR_3_PRIME Fife INTRON Fife

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By genomic position
Variant impact
Gene name

se_PhototaxisScor_1w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results