DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.806e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.04471

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1938 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10462389	3L_10462389_SNP [dm3] 3L_10469289_SNP [dm6]	G	A	1.152e^-6	0.951	DOWNSTREAM S-Lap3 INTERGENIC
3R	13005783	3R_13005783_SNP [dm3] 3R_17180061_SNP [dm6]	C	T	2.822e^-6	0.951	INTRON Mur89F
2L	2703016	2L_2703016_SNP [dm3] 2L_2703016_SNP [dm6]	T	C	3.279e^-6	0.951	INTRON CG31690
2L	17937738	2L_17937738_SNP [dm3] 2L_17937738_SNP [dm6]	C	T	3.745e^-6	0.951	INTERGENIC
2L	5443208	2L_5443208_SNP [dm3] 2L_5443208_SNP [dm6]	A	C	3.799e^-6	0.951	INTERGENIC
2L	5443152	2L_5443152_SNP [dm3] 2L_5443152_SNP [dm6]	C	T	3.907e^-6	0.951	INTERGENIC
2L	5443170	2L_5443170_SNP [dm3] 2L_5443170_SNP [dm6]	G	C	4.151e^-6	0.951	INTERGENIC
X	2756022	X_2756022_SNP [dm3] X_2861989_SNP [dm6]	T	G	5.098e^-6	0.951	INTRON kirre
3L	7732936	3L_7732936_SNP [dm3] 3L_7739836_SNP [dm6]	C	T	6.019e^-6	0.951	INTRON CG32373 & 1 other
2L	5443150	2L_5443150_SNP [dm3] 2L_5443150_SNP [dm6]	C	G	8.606e^-6	0.951	INTERGENIC
2R	19266285	2R_19266285_SNP [dm3] 2R_23378762_SNP [dm6]	C	G	1.008e^-5	0.951	UTR_5_PRIME yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16641316	2R_16641316_SNP [dm3] 2R_20753811_SNP [dm6]	A	C	1.195e^-5	0.951	DOWNSTREAM CG34202 INTERGENIC	TF binding site mE1_TFBS_cad
3R	22269772	3R_22269772_SNP [dm3] 3R_26444050_SNP [dm6]	C	T	1.295e^-5	0.951	INTRON tx
3L	12556601	3L_12556601_SNP [dm3] 3L_12563501_SNP [dm6]	C	T	1.370e^-5	0.951	INTRON sowah
2L	16918193	2L_16918193_SNP [dm3] 2L_16918193_SNP [dm6]	T	G	1.421e^-5	0.951	INTERGENIC
3L	12556687	3L_12556687_SNP [dm3] 3L_12563587_SNP [dm6]	T	C	1.517e^-5	0.951	INTRON sowah
2L	14475122	2L_14475122_SNP [dm3] 2L_14475122_SNP [dm6]	C	A	1.774e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	27533915	3R_27533915_SNP [dm3] 3R_31708193_SNP [dm6]	A	G	1.808e^-5	0.951	INTRON CG42693
2L	6114848	2L_6114848_DEL [dm3] 2L_6114848_DEL [dm6]	CC	C	1.822e^-5	0.951	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	16934145	2R_16934145_SNP [dm3] 2R_21046640_SNP [dm6]	A	T	1.863e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7010993	2L_7010993_SNP [dm3] 2L_7010993_SNP [dm6]	G	T	1.914e^-5	0.951	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17937737	2L_17937737_SNP [dm3] 2L_17937737_SNP [dm6]	A	T	1.935e^-5	0.951	INTERGENIC
3R	26431528	3R_26431528_DEL [dm3] 3R_30605806_DEL [dm6]	AATCTTAATGGCGACA...	A	2.035e^-5	0.951	UPSTREAM CG31016
2R	1412432	2R_1412432_SNP [dm3] 2R_5524927_SNP [dm6]	A	G	2.074e^-5	0.951	UTR_5_PRIME CG30438 INTRON CG30438
3R	26617078	3R_26617078_SNP [dm3] 3R_30791356_SNP [dm6]	G	C	2.187e^-5	0.951	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
2R	2435852	2R_2435852_SNP [dm3] 2R_6548347_SNP [dm6]	A	C	2.203e^-5	0.951	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	6114863	2L_6114863_SNP [dm3] 2L_6114863_SNP [dm6]	C	T	2.246e^-5	0.951	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	13005781	3R_13005781_SNP [dm3] 3R_17180059_SNP [dm6]	C	T	2.279e^-5	0.951	INTRON Mur89F
2R	17177217	2R_17177217_SNP [dm3] 2R_21289712_SNP [dm6]	G	A	2.469e^-5	0.951	SYNONYMOUS_CODING CG10505
2L	4891434	2L_4891434_SNP [dm3] 2L_4891434_SNP [dm6]	T	C	2.556e^-5	0.951	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14229560	3L_14229560_SNP [dm3] 3L_14236460_SNP [dm6]	A	G	2.557e^-5	0.951	UPSTREAM CG7906 & 1 other INTERGENIC
3L	11566388	3L_11566388_SNP [dm3] 3L_11573288_SNP [dm6]	G	T	2.610e^-5	0.951	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
2L	14475049	2L_14475049_SNP [dm3] 2L_14475049_SNP [dm6]	A	T	2.640e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16392616	2R_16392616_SNP [dm3] 2R_20505111_SNP [dm6]	G	T	2.679e^-5	0.951	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c & 2 others	regulatory region REDfly_CRMs
2L	5443190	2L_5443190_SNP [dm3] 2L_5443190_SNP [dm6]	A	C	2.713e^-5	0.951	INTERGENIC
3L	9683653	3L_9683653_SNP [dm3] 3L_9690553_SNP [dm6]	G	A	2.752e^-5	0.951	INTRON CG6767
2R	3317562	2R_3317562_SNP [dm3] 2R_7430057_SNP [dm6]	T	C	2.860e^-5	0.951	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2L	5443336	2L_5443336_SNP [dm3] 2L_5443336_SNP [dm6]	A	C	2.935e^-5	0.951	INTERGENIC
X	4479624	X_4479624_SNP [dm3] X_4585591_SNP [dm6]	C	G	2.975e^-5	0.951	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	4006650	3L_4006650_SNP [dm3] 3L_4006650_SNP [dm6]	A	C	2.990e^-5	0.951	DOWNSTREAM CG14985 INTERGENIC
2L	3890853	2L_3890853_SNP [dm3] 2L_3890853_SNP [dm6]	C	A	3.125e^-5	0.951	UPSTREAM capu INTRON capu
2L	5443073	2L_5443073_SNP [dm3] 2L_5443073_SNP [dm6]	G	C	3.266e^-5	0.951	INTERGENIC
3R	10542306	3R_10542306_SNP [dm3] 3R_14716584_SNP [dm6]	T	C	3.396e^-5	0.951	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16928472	2L_16928472_SNP [dm3] 2L_16928472_SNP [dm6]	A	T	3.426e^-5	0.951	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6139911	2L_6139911_SNP [dm3] 2L_6139911_SNP [dm6]	T	C	3.482e^-5	0.951	SYNONYMOUS_CODING CG13991 UPSTREAM CR44824	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9336093	3L_9336093_SNP [dm3] 3L_9342993_SNP [dm6]	T	C	3.543e^-5	0.951	SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad
2L	16864412	2L_16864412_SNP [dm3] 2L_16864412_SNP [dm6]	A	G	3.577e^-5	0.951	INTERGENIC
3R	22271116	3R_22271116_SNP [dm3] 3R_26445394_SNP [dm6]	G	A	3.645e^-5	0.951	INTRON tx
2L	5443207	2L_5443207_SNP [dm3] 2L_5443207_SNP [dm6]	T	C	3.654e^-5	0.951	INTERGENIC
3R	27463716	3R_27463716_SNP [dm3] 3R_31637994_SNP [dm6]	T	C	3.738e^-5	0.951	INTRON kek6
2L	1369278	2L_1369278_SNP [dm3] 2L_1369278_SNP [dm6]	T	C	3.785e^-5	0.951	DOWNSTREAM CG14346 INTERGENIC
3L	15767820	3L_15767820_SNP [dm3] 3L_15774720_SNP [dm6]	G	C	3.794e^-5	0.951	INTERGENIC
2R	16338374	2R_16338374_SNP [dm3] 2R_20450869_SNP [dm6]	T	A	3.822e^-5	0.951	INTRON CG12484
2R	18536634	2R_18536634_SNP [dm3] 2R_22649129_SNP [dm6]	T	C	3.837e^-5	0.951	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11236404	3L_11236404_SNP [dm3] 3L_11243304_SNP [dm6]	T	C	3.877e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19113981	2R_19113981_SNP [dm3] 2R_23226458_SNP [dm6]	A	G	3.881e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17339226	2R_17339226_DEL [dm3] 2R_21451721_DEL [dm6]	AAT	A	3.941e^-5	0.951	INTRON Sdc
3L	10330853	3L_10330853_SNP [dm3] 3L_10337753_SNP [dm6]	A	G	4.094e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1580336	3L_1580336_SNP [dm3] 3L_1580336_SNP [dm6]	G	A	4.204e^-5	0.951	INTRON CG13917
2L	2728417	2L_2728417_SNP [dm3] 2L_2728417_SNP [dm6]	C	T	4.210e^-5	0.951	INTRON CG31689
3R	26617154	3R_26617154_SNP [dm3] 3R_30791432_SNP [dm6]	G	A	4.214e^-5	0.951	SPLICE_SITE_REGION wts DOWNSTREAM mir-1013 INTRON wts
2L	14475046	2L_14475046_SNP [dm3] 2L_14475046_SNP [dm6]	C	G	4.228e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	13350726	X_13350726_SNP [dm3] X_13456693_SNP [dm6]	C	T	4.233e^-5	0.951	UTR_3_PRIME CG34324 INTRON Neto
3L	8268718	3L_8268718_SNP [dm3] 3L_8275618_SNP [dm6]	C	T	4.235e^-5	0.951	SYNONYMOUS_CODING Dscam4
2L	15280740	2L_15280740_SNP [dm3] 2L_15280740_SNP [dm6]	T	C	4.279e^-5	0.951	DOWNSTREAM CR45349 INTERGENIC
2L	14335273	2L_14335273_SNP [dm3] 2L_14335273_SNP [dm6]	T	G	4.301e^-5	0.951	INTRON CG33090
2L	12297003	2L_12297003_INS [dm3] 2L_12297003_INS [dm6]	T	TACCGAGTGGCAAGT...	4.387e^-5	0.951	INTRON aret
3R	18456921	3R_18456921_SNP [dm3] 3R_22631199_SNP [dm6]	A	G	4.406e^-5	0.951	DOWNSTREAM CR43474 INTRON loco	regulatory region REDfly_CRMs
2R	16137693	2R_16137693_SNP [dm3] 2R_20250188_SNP [dm6]	T	A	4.414e^-5	0.951	INTRON CG9864	TF binding site mE1_TFBS_cad
3R	22477451	3R_22477451_SNP [dm3] 3R_26651729_SNP [dm6]	G	A	4.441e^-5	0.951	INTRON beat-VII
3R	4950724	3R_4950724_SNP [dm3] 3R_9125002_SNP [dm6]	A	G	4.453e^-5	0.951	INTRON pum
2L	16855059	2L_16855059_INS [dm3] 2L_16855059_INS [dm6]	A	AAGCCCAAC	4.548e^-5	0.951	INTRON CG31809	transposable element FlyBase
2L	14475124	2L_14475124_SNP [dm3] 2L_14475124_SNP [dm6]	A	T	4.622e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3890893	2L_3890893_SNP [dm3] 2L_3890893_SNP [dm6]	G	T	4.637e^-5	0.951	UPSTREAM capu INTRON capu
2L	14475126	2L_14475126_SNP [dm3] 2L_14475126_SNP [dm6]	A	T	4.640e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8507563	3L_8507563_SNP [dm3] 3L_8514463_SNP [dm6]	C	T	4.656e^-5	0.951	SYNONYMOUS_CODING CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	2797213	2R_2797213_SNP [dm3] 2R_6909708_SNP [dm6]	C	A	4.747e^-5	0.951	INTRON CG30158
2L	18016035	2L_18016035_SNP [dm3] 2L_18016035_SNP [dm6]	A	C	4.750e^-5	0.951	INTRON rdo
3L	3928597	3L_3928597_DEL [dm3] 3L_3928597_DEL [dm6]	AAAGATATAT	A	4.776e^-5	0.951	INTRON Eip63F-1
X	12742472	X_12742472_SNP [dm3] X_12848439_SNP [dm6]	T	C	4.826e^-5	0.951	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13337390	2L_13337390_SNP [dm3] 2L_13337390_SNP [dm6]	C	T	4.836e^-5	0.951	INTERGENIC
2L	14475045	2L_14475045_SNP [dm3] 2L_14475045_SNP [dm6]	G	A	4.839e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	2829535	2L_2829535_SNP [dm3] 2L_2829535_SNP [dm6]	T	A	5.105e^-5	0.951	INTRON Duox	TF binding site BDTNP1_TFBS_dl
3R	12035800	3R_12035800_SNP [dm3] 3R_16210078_SNP [dm6]	T	C	5.237e^-5	0.951	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
3R	6897768	3R_6897768_SNP [dm3] 3R_11072046_SNP [dm6]	A	C	5.414e^-5	0.951	INTERGENIC
X	5516601	X_5516601_SNP [dm3] X_5622568_SNP [dm6]	C	A	5.423e^-5	0.951	UPSTREAM l_1_G0045 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	17345258	2R_17345258_SNP [dm3] 2R_21457753_SNP [dm6]	G	A	5.522e^-5	0.951	INTRON Sdc
3L	7732844	3L_7732844_SNP [dm3] 3L_7739744_SNP [dm6]	C	A	5.547e^-5	0.951	INTRON CG32373 & 1 other
X	12742526	X_12742526_SNP [dm3] X_12848493_SNP [dm6]	A	C	5.624e^-5	0.951	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4006615	3L_4006615_SNP [dm3] 3L_4006615_SNP [dm6]	G	T	5.670e^-5	0.951	UTR_3_PRIME CG14985
2L	15237681	2L_15237681_SNP [dm3] 2L_15237681_SNP [dm6]	A	G	5.683e^-5	0.951	INTRON ZnT35C
2L	14475040	2L_14475040_SNP [dm3] 2L_14475040_SNP [dm6]	A	T	5.709e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	17227969	3R_17227969_SNP [dm3] 3R_21402247_SNP [dm6]	A	G	5.710e^-5	0.951	UTR_3_PRIME CG43311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	5.745e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	5.745e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16137691	2R_16137691_SNP [dm3] 2R_20250186_SNP [dm6]	C	T	5.780e^-5	0.951	INTRON CG9864	TF binding site mE1_TFBS_cad
2L	7301462	2L_7301462_DEL [dm3] 2L_7301462_DEL [dm6]	TGCCACGATAAG...	T	5.798e^-5	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12027705	2R_12027705_SNP [dm3] 2R_16140200_SNP [dm6]	T	C	5.870e^-5	0.951	INTRON Got1
3R	20319245	3R_20319245_DEL [dm3] 3R_24493523_DEL [dm6]	TT	T	5.942e^-5	0.951	INTERGENIC
2R	17203991	2R_17203991_SNP [dm3] 2R_21316486_SNP [dm6]	C	G	6.175e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9350276	2R_9350276_SNP [dm3] 2R_13462771_SNP [dm6]	G	A	6.180e^-5	0.951	INTRON arr
2L	1127898	2L_1127898_SNP [dm3] 2L_1127898_SNP [dm6]	G	A	6.306e^-5	0.951	INTRON Pino	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	3162423	2R_3162423_SNP [dm3] 2R_7274918_SNP [dm6]	T	C	6.355e^-5	0.951	INTRON Br140	TF binding site mE1_TFBS_chinmo
3L	5593404	3L_5593404_DEL [dm3] 3L_5600304_DEL [dm6]	ACGA	A	6.384e^-5	0.951	UPSTREAM CG10591 DOWNSTREAM CG10590 INTERGENIC
3L	8269004	3L_8269004_SNP [dm3] 3L_8275904_SNP [dm6]	A	C	6.397e^-5	0.951	INTRON Dscam4
2L	14475135	2L_14475135_MNP [dm3] 2L_14475135_MNP [dm6]	TACAAA	ATTTGC	6.405e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14475042	2L_14475042_SNP [dm3] 2L_14475042_SNP [dm6]	A	G	6.575e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	16466571	X_16466571_SNP [dm3] X_16572538_SNP [dm6]	A	T	6.580e^-5	0.951	INTRON CanA-14F
3R	21913259	3R_21913259_SNP [dm3] 3R_26087537_SNP [dm6]	G	C	6.623e^-5	0.951	INTRON dys
3L	18488341	3L_18488341_SNP [dm3] 3L_18495241_SNP [dm6]	C	T	6.628e^-5	0.951	INTRON AstC-R2
2L	16092563	2L_16092563_SNP [dm3] 2L_16092563_SNP [dm6]	C	T	6.704e^-5	0.951	INTERGENIC
3L	12164055	3L_12164055_SNP [dm3] 3L_12170955_SNP [dm6]	G	C	6.738e^-5	0.951	INTRON Rh7
2L	4855663	2L_4855663_SNP [dm3] 2L_4855663_SNP [dm6]	G	T	6.739e^-5	0.951	INTRON pog
2L	14475157	2L_14475157_SNP [dm3] 2L_14475157_SNP [dm6]	G	A	6.767e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12556405	3L_12556405_SNP [dm3] 3L_12563305_SNP [dm6]	G	C	6.774e^-5	0.951	INTRON sowah
2R	16641947	2R_16641947_SNP [dm3] 2R_20754442_SNP [dm6]	A	T	6.793e^-5	0.951	DOWNSTREAM CG34202 INTERGENIC
2L	14475149	2L_14475149_SNP [dm3] 2L_14475149_SNP [dm6]	G	T	6.839e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	16756249	3L_16756249_SNP [dm3] 3L_16763149_SNP [dm6]	G	A	6.858e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	7.046e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5572745	X_5572745_SNP [dm3] X_5678712_SNP [dm6]	A	T	7.081e^-5	0.951	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	14475112	2L_14475112_SNP [dm3] 2L_14475112_SNP [dm6]	A	T	7.098e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22064567	3R_22064567_SNP [dm3] 3R_26238845_SNP [dm6]	G	T	7.137e^-5	0.951	INTRON CR42745
2L	17988449	2L_17988449_SNP [dm3] 2L_17988449_SNP [dm6]	T	G	7.174e^-5	0.951	UTR_3_PRIME CG5681
3R	3789415	3R_3789415_SNP [dm3] 3R_7963693_SNP [dm6]	A	G	7.181e^-5	0.951	UPSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	6395383	X_6395383_SNP [dm3] X_6501350_SNP [dm6]	A	C	7.191e^-5	0.951	INTRON CG42340
3R	13089848	3R_13089848_SNP [dm3] 3R_17264126_SNP [dm6]	C	T	7.203e^-5	0.951	INTRON beat-IIb
3L	8268772	3L_8268772_SNP [dm3] 3L_8275672_SNP [dm6]	G	A	7.280e^-5	0.951	SPLICE_SITE_REGION Dscam4 INTRON Dscam4
2L	14475164	2L_14475164_SNP [dm3] 2L_14475164_SNP [dm6]	T	G	7.285e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11566155	3L_11566155_SNP [dm3] 3L_11573055_SNP [dm6]	A	G	7.296e^-5	0.951	SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
3R	10665693	3R_10665693_SNP [dm3] 3R_14839971_SNP [dm6]	A	T	7.333e^-5	0.951	INTRON btsz
2L	14475113	2L_14475113_SNP [dm3] 2L_14475113_SNP [dm6]	A	T	7.372e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14475116	2L_14475116_DEL [dm3] 2L_14475116_DEL [dm6]	CA	T	7.372e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14475128	2L_14475128_INS [dm3] 2L_14475128_INS [dm6]	A	TGAT	7.374e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	9015050	X_9015050_SNP [dm3] X_9121017_SNP [dm6]	G	T	7.400e^-5	0.951	UPSTREAM CR45539 DOWNSTREAM fend INTERGENIC
2L	14475166	2L_14475166_SNP [dm3] 2L_14475166_SNP [dm6]	C	T	7.470e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	20548701	2R_20548701_SNP [dm3] 2R_24661178_SNP [dm6]	C	T	7.501e^-5	0.951	UPSTREAM CG3663 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14475240	2L_14475240_SNP [dm3] 2L_14475240_SNP [dm6]	C	T	7.552e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16814357	2L_16814357_SNP [dm3] 2L_16814357_SNP [dm6]	A	G	7.618e^-5	0.951	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_sens
3L	1918282	3L_1918282_SNP [dm3] 3L_1918282_SNP [dm6]	G	A	7.632e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20883283	3R_20883283_DEL [dm3] 3R_25057561_DEL [dm6]	AGCCAGTGCAGATA...	A	7.674e^-5	0.951	INTRON Unc-13-4B	TF binding site BDTNP1_TFBS_dl
3L	5562699	3L_5562699_SNP [dm3] 3L_5569599_SNP [dm6]	T	C	7.748e^-5	0.951	INTRON Msr-110
3R	13005322	3R_13005322_SNP [dm3] 3R_17179600_SNP [dm6]	C	T	7.752e^-5	0.951	INTRON Mur89F
3R	10665720	3R_10665720_SNP [dm3] 3R_14839998_SNP [dm6]	T	C	7.760e^-5	0.951	INTRON btsz
2L	3962837	2L_3962837_SNP [dm3] 2L_3962837_SNP [dm6]	C	A	7.805e^-5	0.951	INTRON fred	TF binding site mE1_TFBS_bab1
X	11308447	X_11308447_SNP [dm3] X_11414414_SNP [dm6]	C	T	7.936e^-5	0.951	INTRON Gr10a
2L	5536847	2L_5536847_SNP [dm3] 2L_5536847_SNP [dm6]	A	G	7.939e^-5	0.951	UPSTREAM tomb DOWNSTREAM CG14015 & 1 other INTERGENIC
X	7430204	X_7430204_SNP [dm3] X_7536171_SNP [dm6]	T	C	7.942e^-5	0.951	NON_SYNONYMOUS_CODING CG32720 INTRON CG32719	TF binding site mE1_TFBS_sens
X	7430286	X_7430286_SNP [dm3] X_7536253_SNP [dm6]	C	A	8.011e^-5	0.951	NON_SYNONYMOUS_CODING CG32720 INTRON CG32719	TF binding site mE1_TFBS_sens
3R	12035745	3R_12035745_SNP [dm3] 3R_16210023_SNP [dm6]	G	A	8.015e^-5	0.951	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	14475145	2L_14475145_SNP [dm3] 2L_14475145_SNP [dm6]	C	T	8.195e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3964595	2L_3964595_SNP [dm3] 2L_3964595_SNP [dm6]	A	G	8.287e^-5	0.951	INTRON fred
3L	3146842	3L_3146842_SNP [dm3] 3L_3146842_SNP [dm6]	A	G	8.310e^-5	0.951	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17328420	2R_17328420_SNP [dm3] 2R_21440915_SNP [dm6]	A	G	8.316e^-5	0.951	INTRON Sdc
2R	18427191	2R_18427191_SNP [dm3] 2R_22539686_SNP [dm6]	T	C	8.389e^-5	0.951	INTRON px
2L	18353669	2L_18353669_SNP [dm3] 2L_18353669_SNP [dm6]	A	G	8.421e^-5	0.951	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6112808	2L_6112808_SNP [dm3] 2L_6112808_SNP [dm6]	A	C	8.474e^-5	0.951	INTRON stai
2L	14475100	2L_14475100_SNP [dm3] 2L_14475100_SNP [dm6]	G	A	8.555e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	18337382	2R_18337382_SNP [dm3] 2R_22449877_SNP [dm6]	C	G	8.650e^-5	0.951	INTERGENIC	TF binding site mE1_TFBS_inv
2L	22152664	2L_22152664_SNP [dm3] 2L_22152664_SNP [dm6]	T	C	8.834e^-5	0.951	UPSTREAM CG42748 DOWNSTREAM CG34137 INTRON CG42748	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26617141	3R_26617141_SNP [dm3] 3R_30791419_SNP [dm6]	T	A	8.855e^-5	0.951	DOWNSTREAM mir-1013 INTRON wts
2L	14475069	2L_14475069_SNP [dm3] 2L_14475069_SNP [dm6]	T	A	8.869e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9545695	3L_9545695_SNP [dm3] 3L_9552595_SNP [dm6]	A	T	8.910e^-5	0.951	INTRON CG42673
2L	16864593	2L_16864593_SNP [dm3] 2L_16864593_SNP [dm6]	G	A	8.921e^-5	0.951	INTERGENIC
2L	17942449	2L_17942449_SNP [dm3] 2L_17942449_SNP [dm6]	A	C	8.982e^-5	0.951	INTERGENIC
2L	5624984	2L_5624984_SNP [dm3] 2L_5624984_SNP [dm6]	G	T	9.007e^-5	0.951	INTERGENIC
3L	8574881	3L_8574881_SNP [dm3] 3L_8581781_SNP [dm6]	C	T	9.048e^-5	0.951	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078
3R	25862485	3R_25862485_SNP [dm3] 3R_30036763_SNP [dm6]	C	T	9.070e^-5	0.951	SYNONYMOUS_CODING CG7928 DOWNSTREAM ocn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1369201	2L_1369201_SNP [dm3] 2L_1369201_SNP [dm6]	C	G	9.073e^-5	0.951	DOWNSTREAM CG14346 INTERGENIC
2R	6128597	2R_6128597_SNP [dm3] 2R_10241092_SNP [dm6]	G	A	9.077e^-5	0.951	UTR_5_PRIME Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17335924	2R_17335924_SNP [dm3] 2R_21448419_SNP [dm6]	G	C	9.159e^-5	0.951	INTRON Sdc
X	8662538	X_8662538_SNP [dm3] X_8768505_SNP [dm6]	T	C	9.206e^-5	0.951	INTRON Lim1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22621943	3R_22621943_SNP [dm3] 3R_26796221_SNP [dm6]	G	T	9.246e^-5	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4053113	2L_4053113_SNP [dm3] 2L_4053113_SNP [dm6]	A	G	9.289e^-5	0.951	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16466576	X_16466576_SNP [dm3] X_16572543_SNP [dm6]	G	T	9.370e^-5	0.951	INTRON CanA-14F
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	9.436e^-5	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16335922	2L_16335922_SNP [dm3] 2L_16335922_SNP [dm6]	A	T	9.534e^-5	0.951	NON_SYNONYMOUS_CODING CG31817
2L	14762590	2L_14762590_SNP [dm3] 2L_14762590_SNP [dm6]	C	G	9.574e^-5	0.951	UPSTREAM CSN1a DOWNSTREAM CG4691 EXON CR44858
3L	18488333	3L_18488333_SNP [dm3] 3L_18495233_SNP [dm6]	T	A	9.609e^-5	0.951	INTRON AstC-R2
3L	12556686	3L_12556686_SNP [dm3] 3L_12563586_SNP [dm6]	A	G	9.649e^-5	0.951	INTRON sowah
2L	5443185	2L_5443185_SNP [dm3] 2L_5443185_SNP [dm6]	G	A	9.941e^-5	0.951	INTERGENIC
2L	14475161	2L_14475161_SNP [dm3] 2L_14475161_SNP [dm6]	T	A	9.962e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16641951	2R_16641951_SNP [dm3] 2R_20754446_SNP [dm6]	T	A	1.005e^-4	0.951	DOWNSTREAM CG34202 INTERGENIC
2L	14475092	2L_14475092_SNP [dm3] 2L_14475092_SNP [dm6]	T	C	1.005e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14475160	2L_14475160_SNP [dm3] 2L_14475160_SNP [dm6]	A	C	1.006e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1193899	2L_1193899_DEL [dm3] 2L_1193899_DEL [dm6]	TTC	G	1.017e^-4	0.951	INTRON CG5001
3L	8237195	3L_8237195_SNP [dm3] 3L_8244095_SNP [dm6]	G	C	1.023e^-4	0.951	INTRON Dscam4
3L	7580577	3L_7580577_SNP [dm3] 3L_7587477_SNP [dm6]	A	T	1.023e^-4	0.951	DOWNSTREAM CG14838 INTERGENIC
3R	26617149	3R_26617149_SNP [dm3] 3R_30791427_SNP [dm6]	C	T	1.030e^-4	0.951	DOWNSTREAM mir-1013 INTRON wts
2R	2423324	2R_2423324_SNP [dm3] 2R_6535819_SNP [dm6]	C	A	1.036e^-4	0.951	INTRON jing
2R	18385313	2R_18385313_SNP [dm3] 2R_22497808_SNP [dm6]	C	T	1.043e^-4	0.951	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17345039	2R_17345039_SNP [dm3] 2R_21457534_SNP [dm6]	G	A	1.047e^-4	0.951	INTRON Sdc
3R	22374373	3R_22374373_SNP [dm3] 3R_26548651_SNP [dm6]	C	T	1.053e^-4	0.951	INTRON scrib	TF binding site mE1_TFBS_HSA
3L	2201181	3L_2201181_SNP [dm3] 3L_2201181_SNP [dm6]	T	C	1.059e^-4	0.951	INTERGENIC
2L	8712653	2L_8712653_SNP [dm3] 2L_8712653_SNP [dm6]	A	C	1.060e^-4	0.951	INTRON raw
3L	13981095	3L_13981095_SNP [dm3] 3L_13987995_SNP [dm6]	T	C	1.060e^-4	0.951	SYNONYMOUS_CODING CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	1.062e^-4	0.951	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16404216	3L_16404216_SNP [dm3] 3L_16411116_SNP [dm6]	G	A	1.087e^-4	0.951	SYNONYMOUS_CODING fax	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	7303885	2L_7303885_SNP [dm3] 2L_7303885_SNP [dm6]	G	T	1.090e^-4	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6195367	2R_6195367_SNP [dm3] 2R_10307862_SNP [dm6]	G	A	1.094e^-4	0.951	SYNONYMOUS_CODING JhI-1 DOWNSTREAM CAP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14475158	2L_14475158_SNP [dm3] 2L_14475158_SNP [dm6]	T	A	1.094e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	12742832	X_12742832_SNP [dm3] X_12848799_SNP [dm6]	T	G	1.105e^-4	0.951	INTRON Pde9	TF binding site mE1_TFBS_inv
3R	23032374	3R_23032374_SNP [dm3] 3R_27206652_SNP [dm6]	G	T	1.108e^-4	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	23243672	3R_23243672_SNP [dm3] 3R_27417950_SNP [dm6]	G	A	1.113e^-4	0.951	INTRON side
3L	18989097	3L_18989097_SNP [dm3] 3L_18995997_SNP [dm6]	A	G	1.119e^-4	0.951	UPSTREAM CG18135 INTRON CG18135
2L	17337253	2L_17337253_SNP [dm3] 2L_17337253_SNP [dm6]	T	G	1.123e^-4	0.951	INTERGENIC	TF binding site mE1_TFBS_Trl
X	10343911	X_10343911_SNP [dm3] X_10449878_SNP [dm6]	G	A	1.123e^-4	0.951	INTRON CG32683
3L	12556403	3L_12556403_SNP [dm3] 3L_12563303_SNP [dm6]	A	C	1.126e^-4	0.951	INTRON sowah
3R	26617138	3R_26617138_SNP [dm3] 3R_30791416_SNP [dm6]	T	C	1.127e^-4	0.951	DOWNSTREAM mir-1013 INTRON wts
2R	2797236	2R_2797236_SNP [dm3] 2R_6909731_SNP [dm6]	T	A	1.129e^-4	0.951	INTRON CG30158
2R	8485744	2R_8485744_SNP [dm3] 2R_12598239_SNP [dm6]	T	G	1.135e^-4	0.951	INTRON Amph
2L	15280713	2L_15280713_SNP [dm3] 2L_15280713_SNP [dm6]	G	T	1.136e^-4	0.951	DOWNSTREAM CR45349 INTERGENIC
2R	3161210	2R_3161210_SNP [dm3] 2R_7273705_SNP [dm6]	G	A	1.143e^-4	0.951	NON_SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15058549	3L_15058549_SNP [dm3] 3L_15065449_SNP [dm6]	A	C	1.145e^-4	0.951	UPSTREAM Sytbeta DOWNSTREAM cp309 INTERGENIC
2R	17330320	2R_17330320_SNP [dm3] 2R_21442815_SNP [dm6]	A	T	1.149e^-4	0.951	INTRON Sdc
3L	14624809	3L_14624809_SNP [dm3] 3L_14631709_SNP [dm6]	A	G	1.150e^-4	0.951	SYNONYMOUS_CODING RecQ5 UPSTREAM dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	9335230	3L_9335230_SNP [dm3] 3L_9342130_SNP [dm6]	G	T	1.157e^-4	0.951	INTRON PGRP-LC	TF binding site mE1_TFBS_cad
2L	7363468	2L_7363468_INS [dm3] 2L_7363468_INS [dm6]	A	AA	1.159e^-4	0.951	UTR_5_PRIME Wnt10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8268794	3L_8268794_SNP [dm3] 3L_8275694_SNP [dm6]	G	A	1.160e^-4	0.951	INTRON Dscam4
3L	8268806	3L_8268806_SNP [dm3] 3L_8275706_SNP [dm6]	A	T	1.160e^-4	0.951	INTRON Dscam4
3R	23550391	3R_23550391_SNP [dm3] 3R_27724669_SNP [dm6]	C	T	1.163e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6143493	2L_6143493_SNP [dm3] 2L_6143493_SNP [dm6]	C	T	1.166e^-4	0.951	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14084016	2R_14084016_SNP [dm3] 2R_18196511_SNP [dm6]	G	A	1.181e^-4	0.951	INTERGENIC
2L	7560108	2L_7560108_SNP [dm3] 2L_7560108_SNP [dm6]	G	T	1.181e^-4	0.951	INTRON RapGAP1
3L	2201237	3L_2201237_SNP [dm3] 3L_2201237_SNP [dm6]	C	T	1.182e^-4	0.951	INTERGENIC
2R	17188289	2R_17188289_SNP [dm3] 2R_21300784_SNP [dm6]	C	A	1.187e^-4	0.951	INTRON CG42672
X	4656099	X_4656099_SNP [dm3] X_4762066_SNP [dm6]	C	T	1.190e^-4	0.951	INTERGENIC
2L	5443181	2L_5443181_SNP [dm3] 2L_5443181_SNP [dm6]	G	T	1.199e^-4	0.951	INTERGENIC
2L	14475186	2L_14475186_SNP [dm3] 2L_14475186_SNP [dm6]	A	T	1.216e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	10463002	3L_10463002_SNP [dm3] 3L_10469902_SNP [dm6]	A	C	1.217e^-4	0.951	DOWNSTREAM S-Lap3 INTERGENIC
3L	2469175	3L_2469175_SNP [dm3] 3L_2469175_SNP [dm6]	C	G	1.222e^-4	0.951	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7303886	2L_7303886_SNP [dm3] 2L_7303886_SNP [dm6]	A	G	1.223e^-4	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2201217	3L_2201217_SNP [dm3] 3L_2201217_SNP [dm6]	A	G	1.232e^-4	0.951	INTERGENIC
3L	4422458	3L_4422458_SNP [dm3] 3L_4422458_SNP [dm6]	A	G	1.235e^-4	0.951	INTRON CG15020
2R	18796002	2R_18796002_SNP [dm3] 2R_22908479_SNP [dm6]	G	A	1.237e^-4	0.951	INTRON nahoda
3L	18881213	3L_18881213_SNP [dm3] 3L_18888113_SNP [dm6]	A	G	1.244e^-4	0.951	INTRON CG3961
X	20865877	X_20865877_DEL [dm3] X_20994850_DEL [dm6]	TAG	T	1.246e^-4	0.951	INTERGENIC
2L	6143541	2L_6143541_SNP [dm3] 2L_6143541_SNP [dm6]	T	C	1.247e^-4	0.951	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1723409	2L_1723409_SNP [dm3] 2L_1723409_SNP [dm6]	A	C	1.256e^-4	0.951	INTRON Rim2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16512497	2R_16512497_SNP [dm3] 2R_20624992_SNP [dm6]	C	T	1.258e^-4	0.951	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
3R	22484923	3R_22484923_SNP [dm3] 3R_26659201_SNP [dm6]	A	G	1.278e^-4	0.951	INTRON beat-VII
2L	10463287	2L_10463287_SNP [dm3] 2L_10463287_SNP [dm6]	G	T	1.280e^-4	0.951	DOWNSTREAM RluA-1 & 1 other INTERGENIC
2L	3964457	2L_3964457_SNP [dm3] 2L_3964457_SNP [dm6]	C	T	1.285e^-4	0.951	INTRON fred
3R	6897766	3R_6897766_SNP [dm3] 3R_11072044_SNP [dm6]	T	A	1.286e^-4	0.951	INTERGENIC
2L	6979338	2L_6979338_SNP [dm3] 2L_6979338_SNP [dm6]	G	A	1.295e^-4	0.951	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15058546	3L_15058546_SNP [dm3] 3L_15065446_SNP [dm6]	A	T	1.301e^-4	0.951	UPSTREAM Sytbeta DOWNSTREAM cp309 INTERGENIC
3L	15786228	3L_15786228_SNP [dm3] 3L_15793128_SNP [dm6]	T	C	1.319e^-4	0.951	INTERGENIC
X	16466583	X_16466583_SNP [dm3] X_16572550_SNP [dm6]	T	A	1.324e^-4	0.951	INTRON CanA-14F
2L	14096235	2L_14096235_SNP [dm3] 2L_14096235_SNP [dm6]	G	A	1.333e^-4	0.951	INTERGENIC
2L	1369511	2L_1369511_SNP [dm3] 2L_1369511_SNP [dm6]	T	C	1.337e^-4	0.951	DOWNSTREAM CG14346 INTERGENIC
2R	4267743	2R_4267743_SNP [dm3] 2R_8380238_SNP [dm6]	T	C	1.342e^-4	0.951	INTRON pdm3	TF binding site BDTNP1_TFBS_dl
3R	26431871	3R_26431871_SNP [dm3] 3R_30606149_SNP [dm6]	C	T	1.348e^-4	0.951	UPSTREAM CG31016 DOWNSTREAM PH4alphaNE3 INTERGENIC
2R	17338123	2R_17338123_SNP [dm3] 2R_21450618_SNP [dm6]	T	C	1.349e^-4	0.951	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13594996	X_13594996_SNP [dm3] X_13700963_SNP [dm6]	G	A	1.370e^-4	0.951	INTRON CG9940 & 1 other
3R	4962576	3R_4962576_SNP [dm3] 3R_9136854_SNP [dm6]	C	G	1.377e^-4	0.951	INTRON pum
2R	17210639	2R_17210639_SNP [dm3] 2R_21323134_SNP [dm6]	G	A	1.383e^-4	0.951	UTR_5_PRIME CG30394 UPSTREAM dom INTRON CG30394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens
3L	10330864	3L_10330864_SNP [dm3] 3L_10337764_SNP [dm6]	A	G	1.385e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14646061	2R_14646061_SNP [dm3] 2R_18758556_SNP [dm6]	C	T	1.386e^-4	0.951	NON_SYNONYMOUS_CODING Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	1.390e^-4	0.951	INTERGENIC
2L	22157981	2L_22157981_DEL [dm3] 2L_22157981_DEL [dm6]	TT	T	1.398e^-4	0.951	INTRON CG42748
3R	6891164	3R_6891164_SNP [dm3] 3R_11065442_SNP [dm6]	T	C	1.402e^-4	0.951	INTERGENIC
2L	14475168	2L_14475168_DEL [dm3] 2L_14475168_DEL [dm6]	AAT	A	1.404e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14475173	2L_14475173_SNP [dm3] 2L_14475173_SNP [dm6]	G	A	1.404e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14475176	2L_14475176_DEL [dm3] 2L_14475176_DEL [dm6]	CTAA	G	1.404e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	17336497	2R_17336497_DEL [dm3] 2R_21448992_DEL [dm6]	TTT	T	1.409e^-4	0.951	INTRON Sdc
2L	4949176	2L_4949176_SNP [dm3] 2L_4949176_SNP [dm6]	T	C	1.412e^-4	0.951	SYNONYMOUS_CODING jet DOWNSTREAM betaggt-I & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14127188	2R_14127188_SNP [dm3] 2R_18239683_SNP [dm6]	G	C	1.423e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16820085	2R_16820085_SNP [dm3] 2R_20932580_SNP [dm6]	T	G	1.425e^-4	0.951	INTRON Rx	TF binding site BDTNP1_TFBS_dl
3L	6366339	3L_6366339_SNP [dm3] 3L_6373239_SNP [dm6]	T	C	1.428e^-4	0.951	INTERGENIC
2R	11048241	2R_11048241_DEL [dm3] 2R_15160736_DEL [dm6]	GTTACTAGATATTCG...	G	1.429e^-4	0.951	INTRON igl
3L	3344746	3L_3344746_DEL [dm3] 3L_3344746_DEL [dm6]	AA	A	1.431e^-4	0.951	INTRON kst
3L	16538561	3L_16538561_SNP [dm3] 3L_16545461_SNP [dm6]	A	T	1.438e^-4	0.951	INTRON CG13033
3L	16538563	3L_16538563_SNP [dm3] 3L_16545463_SNP [dm6]	T	A	1.438e^-4	0.951	INTRON CG13033
3L	16538566	3L_16538566_SNP [dm3] 3L_16545466_SNP [dm6]	A	T	1.438e^-4	0.951	INTRON CG13033
2R	17336078	2R_17336078_SNP [dm3] 2R_21448573_SNP [dm6]	C	G	1.441e^-4	0.951	INTRON Sdc	TF binding site mE1_TFBS_sens
2R	2435801	2R_2435801_SNP [dm3] 2R_6548296_SNP [dm6]	C	G	1.442e^-4	0.951	INTRON jing
3R	14919554	3R_14919554_SNP [dm3] 3R_19093832_SNP [dm6]	A	C	1.462e^-4	0.951	UTR_5_PRIME cdi DOWNSTREAM mRpL55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12568093	3L_12568093_SNP [dm3] 3L_12574993_SNP [dm6]	C	T	1.473e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17343487	2R_17343487_SNP [dm3] 2R_21455982_SNP [dm6]	G	T	1.474e^-4	0.951	INTRON Sdc	TF binding site BDTNP1_TFBS_da
2L	14762902	2L_14762902_SNP [dm3] 2L_14762902_SNP [dm6]	T	C	1.475e^-4	0.951	SYNONYMOUS_CODING CSN1a DOWNSTREAM CG4691 & 1 other
X	4259683	X_4259683_SNP [dm3] X_4365650_SNP [dm6]	T	G	1.476e^-4	0.951	UPSTREAM CG3626 DOWNSTREAM mir-982 & 2 others INTERGENIC
3R	22476644	3R_22476644_SNP [dm3] 3R_26650922_SNP [dm6]	A	T	1.476e^-4	0.951	INTRON beat-VII
X	6108612	X_6108612_SNP [dm3] X_6214579_SNP [dm6]	T	C	1.480e^-4	0.951	INTERGENIC
2R	16290944	2R_16290944_SNP [dm3] 2R_20403439_SNP [dm6]	A	G	1.483e^-4	0.951	INTERGENIC
3R	13189629	3R_13189629_SNP [dm3] 3R_17363907_SNP [dm6]	C	A	1.492e^-4	0.951	INTRON beat-IIa
2L	11016449	2L_11016449_INS [dm3] 2L_11016449_INS [dm6]	A	AAAAA	1.509e^-4	0.951	UPSTREAM CG14913 INTRON Samuel & 1 other	TF binding site mE1_TFBS_cad
2L	17960198	2L_17960198_SNP [dm3] 2L_17960198_SNP [dm6]	A	G	1.515e^-4	0.951	INTERGENIC	insulator Insulator_Class_I.mE01
3L	7580578	3L_7580578_SNP [dm3] 3L_7587478_SNP [dm6]	A	T	1.517e^-4	0.951	DOWNSTREAM CG14838 INTERGENIC
2L	1193809	2L_1193809_SNP [dm3] 2L_1193809_SNP [dm6]	A	G	1.523e^-4	0.951	INTRON CG5001
2L	15306741	2L_15306741_SNP [dm3] 2L_15306741_SNP [dm6]	A	G	1.525e^-4	0.951	INTERGENIC
2R	17340251	2R_17340251_SNP [dm3] 2R_21452746_SNP [dm6]	C	G	1.527e^-4	0.951	INTRON Sdc
3L	12556622	3L_12556622_SNP [dm3] 3L_12563522_SNP [dm6]	C	T	1.530e^-4	0.951	INTRON sowah
2L	14475063	2L_14475063_SNP [dm3] 2L_14475063_SNP [dm6]	T	A	1.533e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	6933386	2L_6933386_SNP [dm3] 2L_6933386_SNP [dm6]	G	A	1.538e^-4	0.951	DOWNSTREAM CG43232 INTRON CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10665088	3R_10665088_SNP [dm3] 3R_14839366_SNP [dm6]	C	T	1.548e^-4	0.951	INTRON btsz
X	6467987	X_6467987_SNP [dm3] X_6573954_SNP [dm6]	A	C	1.552e^-4	0.951	INTRON CG34417
3L	14244221	3L_14244221_DEL [dm3] 3L_14251121_DEL [dm6]	ATGTG	A	1.557e^-4	0.951	INTERGENIC
2L	9874967	2L_9874967_SNP [dm3] 2L_9874967_SNP [dm6]	T	C	1.559e^-4	0.951	INTRON nAChRalpha6
2L	14475109	2L_14475109_SNP [dm3] 2L_14475109_SNP [dm6]	C	G	1.570e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	15272103	2L_15272103_SNP [dm3] 2L_15272103_SNP [dm6]	C	G	1.574e^-4	0.951	UPSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17995461	2R_17995461_SNP [dm3] 2R_22107956_SNP [dm6]	C	T	1.582e^-4	0.951	UTR_3_PRIME Vrp1 INTRON Vrp1
2L	9032413	2L_9032413_DEL [dm3] 2L_9032413_DEL [dm6]	ACCAAGCCAGTTCACGG...	A	1.583e^-4	0.951	UPSTREAM CG9582 & 1 other INTERGENIC
2L	7076496	2L_7076496_DEL [dm3] 2L_7076496_DEL [dm6]	AT	A	1.583e^-4	0.951	INTRON Pvf2
3R	25662004	3R_25662004_SNP [dm3] 3R_29836282_SNP [dm6]	C	A	1.589e^-4	0.951	UTR_5_PRIME CG42592 UPSTREAM CG15510 INTRON CG15510
3L	12556492	3L_12556492_SNP [dm3] 3L_12563392_SNP [dm6]	A	T	1.604e^-4	0.951	INTRON sowah
2R	16934423	2R_16934423_SNP [dm3] 2R_21046918_SNP [dm6]	C	A	1.606e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	14475096	2L_14475096_SNP [dm3] 2L_14475096_SNP [dm6]	C	T	1.614e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	17358346	2R_17358346_SNP [dm3] 2R_21470841_SNP [dm6]	C	T	1.616e^-4	0.951	INTRON Sdc
2R	2989676	2R_2989676_DEL [dm3] 2R_7102171_DEL [dm6]	CTGTTTATTTGAGATCTATA...	T	1.617e^-4	0.951	INTRON esn
3L	6431012	3L_6431012_SNP [dm3] 3L_6437912_SNP [dm6]	C	A	1.619e^-4	0.951	INTRON CG42747
X	8736690	X_8736690_SNP [dm3] X_8842657_SNP [dm6]	G	A	1.627e^-4	0.951	INTRON CG12075
2L	15272718	2L_15272718_SNP [dm3] 2L_15272718_SNP [dm6]	G	T	1.628e^-4	0.951	UPSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18996467	3L_18996467_SNP [dm3] 3L_19003367_SNP [dm6]	C	T	1.628e^-4	0.951	UPSTREAM CG18136 DOWNSTREAM nkd INTERGENIC
X	4259690	X_4259690_DEL [dm3] X_4365657_DEL [dm6]	TT	C	1.629e^-4	0.951	UPSTREAM CG3626 DOWNSTREAM mir-982 & 2 others INTERGENIC
3L	11566386	3L_11566386_SNP [dm3] 3L_11573286_SNP [dm6]	T	G	1.629e^-4	0.951	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
2L	17864788	2L_17864788_DEL [dm3] 2L_17864788_DEL [dm6]	GAG	G	1.634e^-4	0.951	INTRON CadN2
2R	10958737	2R_10958737_SNP [dm3] 2R_15071232_SNP [dm6]	C	T	1.635e^-4	0.951	INTERGENIC
2L	8712651	2L_8712651_SNP [dm3] 2L_8712651_SNP [dm6]	C	T	1.642e^-4	0.951	INTRON raw
2L	16096827	2L_16096827_INS [dm3] 2L_16096827_INS [dm6]	T	TTTAATATTAATTT...	1.645e^-4	0.951	DOWNSTREAM CG4891 INTERGENIC
X	8778493	X_8778493_SNP [dm3] X_8884460_SNP [dm6]	T	A	1.647e^-4	0.951	INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14475172	2L_14475172_SNP [dm3] 2L_14475172_SNP [dm6]	T	C	1.647e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22515912	3R_22515912_SNP [dm3] 3R_26690190_SNP [dm6]	T	G	1.657e^-4	0.951	INTERGENIC
2L	6142260	2L_6142260_SNP [dm3] 2L_6142260_SNP [dm6]	G	A	1.675e^-4	0.951	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10542305	3R_10542305_SNP [dm3] 3R_14716583_SNP [dm6]	A	T	1.679e^-4	0.951	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17339651	2R_17339651_SNP [dm3] 2R_21452146_SNP [dm6]	T	C	1.691e^-4	0.951	INTRON Sdc
2R	2989711	2R_2989711_SNP [dm3] 2R_7102206_SNP [dm6]	C	T	1.693e^-4	0.951	INTRON esn
2R	16392327	2R_16392327_SNP [dm3] 2R_20504822_SNP [dm6]	T	G	1.704e^-4	0.951	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c & 1 other	regulatory region REDfly_CRMs
2L	6728804	2L_6728804_SNP [dm3] 2L_6728804_SNP [dm6]	T	C	1.704e^-4	0.951	INTRON Liprin-alpha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18427205	2R_18427205_SNP [dm3] 2R_22539700_SNP [dm6]	C	T	1.705e^-4	0.951	INTRON px
2L	10083417	2L_10083417_SNP [dm3] 2L_10083417_SNP [dm6]	A	C	1.706e^-4	0.951	INTRON CG44153
3R	27534509	3R_27534509_SNP [dm3] 3R_31708787_SNP [dm6]	C	T	1.709e^-4	0.951	UPSTREAM CR34046 & 1 other INTERGENIC
3L	11137873	3L_11137873_SNP [dm3] 3L_11144773_SNP [dm6]	C	T	1.713e^-4	0.951	INTRON CG32082
2R	3165718	2R_3165718_DEL [dm3] 2R_7278213_DEL [dm6]	AA	T	1.715e^-4	0.951	UPSTREAM Incenp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1631221	2L_1631221_SNP [dm3] 2L_1631221_SNP [dm6]	C	G	1.717e^-4	0.951	INTERGENIC
X	4479817	X_4479817_SNP [dm3] X_4585784_SNP [dm6]	T	G	1.726e^-4	0.951	INTRON CR32773	TF binding site mE1_TFBS_HSA
3R	12035535	3R_12035535_SNP [dm3] 3R_16209813_SNP [dm6]	C	A	1.730e^-4	0.951	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
2R	15262963	2R_15262963_SNP [dm3] 2R_19375458_SNP [dm6]	A	G	1.731e^-4	0.951	UTR_5_PRIME CG10062	TF binding site mE1_TFBS_inv
2R	8774038	2R_8774038_SNP [dm3] 2R_12886533_SNP [dm6]	G	T	1.731e^-4	0.951	START_GAINED vg UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8774125	2R_8774125_SNP [dm3] 2R_12886620_SNP [dm6]	A	G	1.731e^-4	0.951	UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	614332	2R_614332_SNP [dm3] 2R_4726827_SNP [dm6]	A	G	1.744e^-4	0.951	INTRON Nipped-B
3R	21446681	3R_21446681_DEL [dm3] 3R_25620959_DEL [dm6]	TT	T	1.744e^-4	0.951	DOWNSTREAM CG5071 INTRON Npl4
3L	12556619	3L_12556619_SNP [dm3] 3L_12563519_SNP [dm6]	T	G	1.745e^-4	0.951	INTRON sowah
3L	7250994	3L_7250994_SNP [dm3] 3L_7257894_SNP [dm6]	G	A	1.757e^-4	0.951	INTRON CG14830
2L	14475077	2L_14475077_INS [dm3] 2L_14475077_INS [dm6]	A	AATAAAGT	1.762e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	5257545	3L_5257545_SNP [dm3] 3L_5264445_SNP [dm6]	T	C	1.764e^-4	0.951	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22269812	3R_22269812_SNP [dm3] 3R_26444090_SNP [dm6]	G	A	1.765e^-4	0.951	INTRON tx
3L	8068700	3L_8068700_SNP [dm3] 3L_8075600_SNP [dm6]	T	C	1.766e^-4	0.951	INTRON Ect4
3L	8269007	3L_8269007_SNP [dm3] 3L_8275907_SNP [dm6]	T	A	1.771e^-4	0.951	INTRON Dscam4
2R	6254379	2R_6254379_DEL [dm3] 2R_10366874_DEL [dm6]	TGG	T	1.783e^-4	0.951	INTRON CG42732
2R	17339652	2R_17339652_DEL [dm3] 2R_21452147_DEL [dm6]	AT	A	1.787e^-4	0.951	INTRON Sdc
3R	16240671	3R_16240671_SNP [dm3] 3R_20414949_SNP [dm6]	C	T	1.793e^-4	0.951	INTRON Gfrl
2R	8773495	2R_8773495_DEL [dm3] 2R_12885990_DEL [dm6]	AAGCTAAAG	A	1.797e^-4	0.951	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	322853	3L_322853_SNP [dm3] 3L_322853_SNP [dm6]	C	A	1.805e^-4	0.951	INTRON CG32344	TF binding site mE1_TFBS_HSA
2L	1723427	2L_1723427_SNP [dm3] 2L_1723427_SNP [dm6]	T	A	1.808e^-4	0.951	INTRON Rim2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16468554	X_16468554_SNP [dm3] X_16574521_SNP [dm6]	C	T	1.813e^-4	0.951	INTRON CanA-14F	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	2797235	2R_2797235_SNP [dm3] 2R_6909730_SNP [dm6]	T	A	1.814e^-4	0.951	INTRON CG30158
2L	16778342	2L_16778342_SNP [dm3] 2L_16778342_SNP [dm6]	A	C	1.817e^-4	0.951	INTRON Mhc
3R	20575064	3R_20575064_SNP [dm3] 3R_24749342_SNP [dm6]	C	T	1.819e^-4	0.951	UPSTREAM tld DOWNSTREAM tok INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17831780	2R_17831780_SNP [dm3] 2R_21944275_SNP [dm6]	C	A	1.836e^-4	0.951	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4259694	X_4259694_SNP [dm3] X_4365661_SNP [dm6]	T	A	1.840e^-4	0.951	UPSTREAM CG3626 DOWNSTREAM mir-982 & 2 others INTERGENIC
2R	8773470	2R_8773470_SNP [dm3] 2R_12885965_SNP [dm6]	G	T	1.846e^-4	0.951	INTRON vg	TF binding site BDTNP1_TFBS_dl
2R	8773488	2R_8773488_INS [dm3] 2R_12885983_INS [dm6]	T	GA	1.846e^-4	0.951	INTRON vg	TF binding site BDTNP1_TFBS_dl
3R	13745854	3R_13745854_SNP [dm3] 3R_17920132_SNP [dm6]	G	A	1.847e^-4	0.951	UTR_5_PRIME cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27328259	3R_27328259_SNP [dm3] 3R_31502537_SNP [dm6]	C	T	1.854e^-4	0.951	SYNONYMOUS_CODING mey	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7665492	X_7665492_SNP [dm3] X_7771459_SNP [dm6]	A	G	1.859e^-4	0.951	INTERGENIC
2L	14475087	2L_14475087_SNP [dm3] 2L_14475087_SNP [dm6]	A	T	1.859e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	7665491	X_7665491_SNP [dm3] X_7771458_SNP [dm6]	A	G	1.865e^-4	0.951	INTERGENIC
2L	6144393	2L_6144393_SNP [dm3] 2L_6144393_SNP [dm6]	T	C	1.871e^-4	0.951	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_chinmo
2R	19599617	2R_19599617_SNP [dm3] 2R_23712094_SNP [dm6]	C	T	1.874e^-4	0.951	INTERGENIC
3L	14229566	3L_14229566_SNP [dm3] 3L_14236466_SNP [dm6]	T	C	1.881e^-4	0.951	UPSTREAM CG7906 & 1 other INTERGENIC
2R	18796058	2R_18796058_DEL [dm3] 2R_22908535_DEL [dm6]	GAA	T	1.884e^-4	0.951	INTRON nahoda
3R	21943168	3R_21943168_SNP [dm3] 3R_26117446_SNP [dm6]	T	A	1.887e^-4	0.951	SPLICE_SITE_REGION CG31324 INTRON CG31324
2R	17329495	2R_17329495_SNP [dm3] 2R_21441990_SNP [dm6]	T	C	1.887e^-4	0.951	INTRON Sdc
3L	3343473	3L_3343473_SNP [dm3] 3L_3343473_SNP [dm6]	T	C	1.897e^-4	0.952	INTRON kst
X	2254115	X_2254115_SNP [dm3] X_2360082_SNP [dm6]	A	C	1.902e^-4	0.952	INTRON ptr
3R	20733991	3R_20733991_SNP [dm3] 3R_24908269_SNP [dm6]	T	C	1.903e^-4	0.952	INTERGENIC
2L	14475209	2L_14475209_SNP [dm3] 2L_14475209_SNP [dm6]	C	T	1.922e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1631289	2L_1631289_SNP [dm3] 2L_1631289_SNP [dm6]	T	C	1.936e^-4	0.953	INTERGENIC
2R	19124875	2R_19124875_SNP [dm3] 2R_23237352_SNP [dm6]	G	A	1.937e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26490514	3R_26490514_SNP [dm3] 3R_30664792_SNP [dm6]	C	T	1.945e^-4	0.953	EXON CR45191
X	19715900	X_19715900_SNP [dm3] X_19821867_SNP [dm6]	G	A	1.950e^-4	0.953	INTERGENIC
2L	14475097	2L_14475097_SNP [dm3] 2L_14475097_SNP [dm6]	C	G	1.962e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	4394746	2R_4394746_SNP [dm3] 2R_8507241_SNP [dm6]	G	C	1.965e^-4	0.953	INTRON mtt
2R	19113990	2R_19113990_SNP [dm3] 2R_23226467_SNP [dm6]	C	T	1.970e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12035684	3R_12035684_SNP [dm3] 3R_16209962_SNP [dm6]	T	C	1.971e^-4	0.953	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	19631652	2R_19631652_SNP [dm3] 2R_23744129_SNP [dm6]	C	G	1.974e^-4	0.953	INTRON egl	TF binding site BDTNP1_TFBS_dl
2R	19631808	2R_19631808_DEL [dm3] 2R_23744285_DEL [dm6]	GC	G	1.974e^-4	0.953	INTRON egl	TF binding site BDTNP1_TFBS_dl
2L	12242233	2L_12242233_SNP [dm3] 2L_12242233_SNP [dm6]	A	G	1.975e^-4	0.953	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8440230	2R_8440230_SNP [dm3] 2R_12552725_SNP [dm6]	C	T	1.978e^-4	0.953	INTRON fra
2R	17339615	2R_17339615_SNP [dm3] 2R_21452110_SNP [dm6]	G	A	1.988e^-4	0.953	INTRON Sdc
2R	17341569	2R_17341569_SNP [dm3] 2R_21454064_SNP [dm6]	C	T	1.996e^-4	0.953	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	14475070	2L_14475070_INS [dm3] 2L_14475070_INS [dm6]	A	AGTATTAGAAAATGCATGAA...	2.003e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	26962245	3R_26962245_SNP [dm3] 3R_31136523_SNP [dm6]	C	G	2.006e^-4	0.953	INTRON Gycbeta100B
3L	8269046	3L_8269046_SNP [dm3] 3L_8275946_SNP [dm6]	T	G	2.007e^-4	0.953	INTRON Dscam4
3R	6888113	3R_6888113_SNP [dm3] 3R_11062391_SNP [dm6]	A	T	2.014e^-4	0.953	INTERGENIC
3R	26746249	3R_26746249_SNP [dm3] 3R_30920527_SNP [dm6]	T	G	2.020e^-4	0.953	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	17567179	2R_17567179_SNP [dm3] 2R_21679674_SNP [dm6]	T	C	2.032e^-4	0.953	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8773359	2R_8773359_SNP [dm3] 2R_12885854_SNP [dm6]	A	C	2.039e^-4	0.953	INTRON vg	TF binding site BDTNP1_TFBS_dl
2R	8773361	2R_8773361_SNP [dm3] 2R_12885856_SNP [dm6]	T	A	2.039e^-4	0.953	INTRON vg	TF binding site BDTNP1_TFBS_dl
2R	12025567	2R_12025567_INS [dm3] 2R_16138062_INS [dm6]	C	CC	2.040e^-4	0.953	UTR_3_PRIME spin UPSTREAM Got1 DOWNSTREAM spin
3L	7579379	3L_7579379_SNP [dm3] 3L_7586279_SNP [dm6]	G	A	2.041e^-4	0.953	SYNONYMOUS_CODING CG14838
2R	18601898	2R_18601898_SNP [dm3] 2R_22714393_SNP [dm6]	T	A	2.048e^-4	0.953	INTRON CG30268	TF binding site BDTNP1_TFBS_twi
3R	20512569	3R_20512569_SNP [dm3] 3R_24686847_SNP [dm6]	T	A	2.052e^-4	0.953	INTRON slo
2R	8440269	2R_8440269_SNP [dm3] 2R_12552764_SNP [dm6]	C	G	2.052e^-4	0.953	INTRON fra
2L	4429211	2L_4429211_SNP [dm3] 2L_4429211_SNP [dm6]	A	G	2.052e^-4	0.953	INTRON CG15431
2R	12388043	2R_12388043_DEL [dm3] 2R_16500538_DEL [dm6]	CCTAAC	C	2.069e^-4	0.954	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14301026	3R_14301026_SNP [dm3] 3R_18475304_SNP [dm6]	C	G	2.072e^-4	0.954	INTRON fru
3R	23247012	3R_23247012_SNP [dm3] 3R_27421290_SNP [dm6]	G	T	2.075e^-4	0.954	INTRON side
2R	3165892	2R_3165892_SNP [dm3] 2R_7278387_SNP [dm6]	T	C	2.078e^-4	0.954	UPSTREAM Incenp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16333311	2L_16333311_SNP [dm3] 2L_16333311_SNP [dm6]	T	C	2.093e^-4	0.954	SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14475085	2L_14475085_INS [dm3] 2L_14475085_INS [dm6]	A	ATGAA	2.097e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	12569257	2R_12569257_SNP [dm3] 2R_16681752_SNP [dm6]	A	G	2.103e^-4	0.954	INTRON CG30463
3L	12164665	3L_12164665_SNP [dm3] 3L_12171565_SNP [dm6]	G	C	2.105e^-4	0.954	INTRON Rh7
2R	16641950	2R_16641950_SNP [dm3] 2R_20754445_SNP [dm6]	A	T	2.116e^-4	0.954	DOWNSTREAM CG34202 INTERGENIC
2L	6116973	2L_6116973_INS [dm3] 2L_6116973_INS [dm6]	G	GTGTGCG	2.127e^-4	0.954	INTRON stai	TF binding site mE1_TFBS_sbb
X	3429529	X_3429529_SNP [dm3] X_3535496_SNP [dm6]	T	C	2.154e^-4	0.954	INTRON CG32791	TF binding site mE1_TFBS_inv
3L	18887555	3L_18887555_SNP [dm3] 3L_18894455_SNP [dm6]	C	T	2.158e^-4	0.954	SYNONYMOUS_CODING CG3902	TF binding site mE1_TFBS_cad
2L	10098209	2L_10098209_SNP [dm3] 2L_10098209_SNP [dm6]	T	C	2.160e^-4	0.954	INTRON CG34109 & 1 other
3L	10255753	3L_10255753_SNP [dm3] 3L_10262653_SNP [dm6]	A	G	2.165e^-4	0.954	INTERGENIC
2R	2944006	2R_2944006_SNP [dm3] 2R_7056501_SNP [dm6]	C	T	2.169e^-4	0.954	SYNONYMOUS_CODING Tsp42Eo UTR_3_PRIME Tsp42Ep
2R	402364	2R_402364_SNP [dm3] 2R_4514859_SNP [dm6]	C	A	2.171e^-4	0.954	DOWNSTREAM RpL38 INTERGENIC
3L	4803117	3L_4803117_SNP [dm3] 3L_4803117_SNP [dm6]	G	C	2.190e^-4	0.954	UTR_3_PRIME CG7509 DOWNSTREAM CR44528
2L	16778345	2L_16778345_DEL [dm3] 2L_16778345_DEL [dm6]	AA	A	2.191e^-4	0.954	INTRON Mhc
2L	11170008	2L_11170008_SNP [dm3] 2L_11170008_SNP [dm6]	C	T	2.194e^-4	0.954	INTRON Ca-beta
X	6861743	X_6861743_SNP [dm3] X_6967710_SNP [dm6]	C	T	2.196e^-4	0.954	UTR_3_PRIME CG14431 DOWNSTREAM CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5787889	3L_5787889_SNP [dm3] 3L_5794789_SNP [dm6]	C	T	2.207e^-4	0.954	SYNONYMOUS_CODING Tektin-C UPSTREAM Bre1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20878612	3R_20878612_SNP [dm3] 3R_25052890_SNP [dm6]	A	G	2.210e^-4	0.954	UTR_3_PRIME CG11791 DOWNSTREAM CG31109
3R	15001689	3R_15001689_SNP [dm3] 3R_19175967_SNP [dm6]	G	C	2.213e^-4	0.954	INTERGENIC
2L	14475220	2L_14475220_SNP [dm3] 2L_14475220_SNP [dm6]	A	G	2.215e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8268859	3L_8268859_SNP [dm3] 3L_8275759_SNP [dm6]	T	A	2.216e^-4	0.954	INTRON Dscam4
2L	14475155	2L_14475155_SNP [dm3] 2L_14475155_SNP [dm6]	T	C	2.223e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	3166959	2R_3166959_SNP [dm3] 2R_7279454_SNP [dm6]	C	T	2.232e^-4	0.954	SYNONYMOUS_CODING Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8268845	3L_8268845_SNP [dm3] 3L_8275745_SNP [dm6]	T	A	2.238e^-4	0.954	INTRON Dscam4
3R	20733967	3R_20733967_SNP [dm3] 3R_24908245_SNP [dm6]	A	C	2.247e^-4	0.954	INTERGENIC
3R	14304620	3R_14304620_SNP [dm3] 3R_18478898_SNP [dm6]	T	C	2.253e^-4	0.954	INTRON fru
3L	16538569	3L_16538569_DEL [dm3] 3L_16545469_DEL [dm6]	ATGTG	A	2.257e^-4	0.954	INTRON CG13033
3L	2349204	3L_2349204_SNP [dm3] 3L_2349204_SNP [dm6]	T	G	2.262e^-4	0.954	INTERGENIC
2R	17748250	2R_17748250_SNP [dm3] 2R_21860745_SNP [dm6]	G	T	2.265e^-4	0.954	UPSTREAM CG9294 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10229276	2R_10229276_SNP [dm3] 2R_14341771_SNP [dm6]	T	A	2.270e^-4	0.954	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3R	22177353	3R_22177353_SNP [dm3] 3R_26351631_SNP [dm6]	C	T	2.273e^-4	0.954	INTRON CG33970
2R	10931790	2R_10931790_SNP [dm3] 2R_15044285_SNP [dm6]	A	G	2.280e^-4	0.954	INTERGENIC
3L	9510276	3L_9510276_DEL [dm3] 3L_9517176_DEL [dm6]	TT	T	2.283e^-4	0.954	INTRON CG33700
3L	8268873	3L_8268873_SNP [dm3] 3L_8275773_SNP [dm6]	A	C	2.285e^-4	0.954	INTRON Dscam4
3R	22515925	3R_22515925_SNP [dm3] 3R_26690203_SNP [dm6]	C	T	2.285e^-4	0.954	INTERGENIC
2L	17992505	2L_17992505_SNP [dm3] 2L_17992505_SNP [dm6]	T	A	2.287e^-4	0.954	DOWNSTREAM Prosbeta5R2 INTERGENIC
3L	1679722	3L_1679722_SNP [dm3] 3L_1679722_SNP [dm6]	A	T	2.292e^-4	0.954	INTRON CG7991
2R	19266379	2R_19266379_SNP [dm3] 2R_23378856_SNP [dm6]	C	T	2.295e^-4	0.954	START_GAINED yellow-d UTR_5_PRIME yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11666554	2R_11666554_DEL [dm3] 2R_15779049_DEL [dm6]	TT	T	2.305e^-4	0.954	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	2797254	2R_2797254_SNP [dm3] 2R_6909749_SNP [dm6]	G	A	2.307e^-4	0.954	INTRON CG30158
3R	22412353	3R_22412353_SNP [dm3] 3R_26586631_SNP [dm6]	T	A	2.307e^-4	0.954	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad
3L	7248007	3L_7248007_SNP [dm3] 3L_7254907_SNP [dm6]	C	A	2.311e^-4	0.954	INTRON CG14830
3L	17798274	3L_17798274_SNP [dm3] 3L_17805174_SNP [dm6]	C	T	2.314e^-4	0.954	SYNONYMOUS_CODING CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8268852	3L_8268852_SNP [dm3] 3L_8275752_SNP [dm6]	T	C	2.332e^-4	0.954	INTRON Dscam4
2R	17593103	2R_17593103_SNP [dm3] 2R_21705598_SNP [dm6]	C	T	2.337e^-4	0.954	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	10330822	3L_10330822_SNP [dm3] 3L_10337722_SNP [dm6]	G	A	2.349e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6935235	2L_6935235_SNP [dm3] 2L_6935235_SNP [dm6]	C	T	2.350e^-4	0.954	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
2R	402387	2R_402387_SNP [dm3] 2R_4514882_SNP [dm6]	C	A	2.350e^-4	0.954	DOWNSTREAM RpL38 INTERGENIC
2L	14475217	2L_14475217_SNP [dm3] 2L_14475217_SNP [dm6]	G	A	2.354e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8349178	2R_8349178_SNP [dm3] 2R_12461673_SNP [dm6]	G	C	2.355e^-4	0.954	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24007535	3R_24007535_SNP [dm3] 3R_28181813_SNP [dm6]	A	G	2.370e^-4	0.954	INTRON CG34354
X	6108616	X_6108616_SNP [dm3] X_6214583_SNP [dm6]	G	C	2.388e^-4	0.954	INTERGENIC
2R	15237476	2R_15237476_SNP [dm3] 2R_19349971_SNP [dm6]	A	G	2.406e^-4	0.954	INTRON Rgk1
2L	17729919	2L_17729919_SNP [dm3] 2L_17729919_SNP [dm6]	G	T	2.439e^-4	0.954	INTRON CadN
3R	22391665	3R_22391665_SNP [dm3] 3R_26565943_SNP [dm6]	A	G	2.443e^-4	0.954	INTRON scrib	TF binding site mE1_TFBS_bab1
3R	12035728	3R_12035728_SNP [dm3] 3R_16210006_SNP [dm6]	T	A	2.443e^-4	0.954	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	2884929	2L_2884929_INS [dm3] 2L_2884929_INS [dm6]	A	TGT	2.448e^-4	0.954	UPSTREAM lilli INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22150228	3R_22150228_SNP [dm3] 3R_26324506_SNP [dm6]	C	A	2.450e^-4	0.954	INTRON CG33970 EXON CR42765
2R	17339540	2R_17339540_SNP [dm3] 2R_21452035_SNP [dm6]	C	G	2.453e^-4	0.954	INTRON Sdc
2R	17330975	2R_17330975_SNP [dm3] 2R_21443470_SNP [dm6]	A	G	2.456e^-4	0.954	INTRON Sdc
X	9977849	X_9977849_SNP [dm3] X_10083816_SNP [dm6]	A	C	2.475e^-4	0.954	SYNONYMOUS_CODING CG2972	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18369185	X_18369185_DEL [dm3] X_18475152_DEL [dm6]	TCGTTCATTTGCAGAAT...	T	2.475e^-4	0.954	INTRON CG32547
2R	16933436	2R_16933436_SNP [dm3] 2R_21045931_SNP [dm6]	G	T	2.481e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19814805	2R_19814805_SNP [dm3] 2R_23927282_SNP [dm6]	C	T	2.482e^-4	0.954	UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A & 1 other INTRON Ca-P60A	TF binding site mE1_TFBS_cad
2R	17333185	2R_17333185_SNP [dm3] 2R_21445680_SNP [dm6]	A	T	2.517e^-4	0.954	INTRON Sdc
2L	5474577	2L_5474577_SNP [dm3] 2L_5474577_SNP [dm6]	G	A	2.518e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	26962236	3R_26962236_INS [dm3] 3R_31136514_INS [dm6]	T	TT	2.520e^-4	0.954	INTRON Gycbeta100B
3R	6004685	3R_6004685_SNP [dm3] 3R_10178963_SNP [dm6]	G	T	2.536e^-4	0.954	INTRON CG12814
X	12962494	X_12962494_SNP [dm3] X_13068461_SNP [dm6]	T	C	2.545e^-4	0.954	SYNONYMOUS_CODING rad
3R	22525213	3R_22525213_SNP [dm3] 3R_26699491_SNP [dm6]	T	C	2.547e^-4	0.954	INTRON amon
2L	4893067	2L_4893067_SNP [dm3] 2L_4893067_SNP [dm6]	T	G	2.561e^-4	0.954	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	18110895	2R_18110895_SNP [dm3] 2R_22223390_SNP [dm6]	T	C	2.563e^-4	0.954	SYNONYMOUS_CODING Oatp58Db DOWNSTREAM Oatp58Dc	TF binding site mE1_TFBS_sens
3L	15222190	3L_15222190_SNP [dm3] 3L_15229090_SNP [dm6]	C	G	2.572e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7362861	2L_7362861_SNP [dm3] 2L_7362861_SNP [dm6]	A	G	2.575e^-4	0.954	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	21152742	2L_21152742_SNP [dm3] 2L_21152742_SNP [dm6]	G	A	2.581e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_sens
3R	22465119	3R_22465119_SNP [dm3] 3R_26639397_SNP [dm6]	T	C	2.581e^-4	0.954	UPSTREAM TwdlD INTERGENIC
3R	27534806	3R_27534806_SNP [dm3] 3R_31709084_SNP [dm6]	C	A	2.582e^-4	0.954	UPSTREAM CR34046 & 1 other INTERGENIC
2R	18426740	2R_18426740_SNP [dm3] 2R_22539235_SNP [dm6]	T	C	2.597e^-4	0.954	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22470670	3R_22470670_SNP [dm3] 3R_26644948_SNP [dm6]	A	G	2.601e^-4	0.954	DOWNSTREAM beat-VII INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22414256	3R_22414256_SNP [dm3] 3R_26588534_SNP [dm6]	T	C	2.626e^-4	0.954	DOWNSTREAM scrib INTRON scrib
2L	7010930	2L_7010930_SNP [dm3] 2L_7010930_SNP [dm6]	A	T	2.630e^-4	0.954	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11168645	2L_11168645_SNP [dm3] 2L_11168645_SNP [dm6]	G	A	2.647e^-4	0.954	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16538567	3L_16538567_SNP [dm3] 3L_16545467_SNP [dm6]	G	T	2.653e^-4	0.954	INTRON CG13033
X	6467742	X_6467742_SNP [dm3] X_6573709_SNP [dm6]	G	A	2.654e^-4	0.954	INTRON CG34417
X	6207603	X_6207603_SNP [dm3] X_6313570_SNP [dm6]	G	A	2.656e^-4	0.954	INTRON CG15894	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18989181	3L_18989181_SNP [dm3] 3L_18996081_SNP [dm6]	T	G	2.656e^-4	0.954	UPSTREAM CG18135 INTRON CG18135	TF binding site mE1_TFBS_Trl
2R	19541385	2R_19541385_SNP [dm3] 2R_23653862_SNP [dm6]	A	G	2.662e^-4	0.954	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13004961	3R_13004961_SNP [dm3] 3R_17179239_SNP [dm6]	T	C	2.669e^-4	0.954	INTRON Mur89F
3L	4650866	3L_4650866_SNP [dm3] 3L_4650866_SNP [dm6]	A	T	2.680e^-4	0.954	DOWNSTREAM CG32238 INTRON axo
2R	18656623	2R_18656623_SNP [dm3] 2R_22769118_SNP [dm6]	G	C	2.681e^-4	0.954	INTRON CG42260
3L	11667226	3L_11667226_SNP [dm3] 3L_11674126_SNP [dm6]	G	T	2.689e^-4	0.954	INTRON CG32085
3R	25607794	3R_25607794_SNP [dm3] 3R_29782072_SNP [dm6]	G	A	2.692e^-4	0.954	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26020506	3R_26020506_SNP [dm3] 3R_30194784_SNP [dm6]	C	G	2.700e^-4	0.954	DOWNSTREAM CG15531 INTERGENIC
2L	1369220	2L_1369220_SNP [dm3] 2L_1369220_SNP [dm6]	C	T	2.712e^-4	0.954	DOWNSTREAM CG14346 INTERGENIC
3L	3951902	3L_3951902_SNP [dm3] 3L_3951902_SNP [dm6]	T	A	2.728e^-4	0.954	INTRON CG14984	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1366577	2L_1366577_SNP [dm3] 2L_1366577_SNP [dm6]	T	A	2.728e^-4	0.954	INTERGENIC
3R	22889813	3R_22889813_SNP [dm3] 3R_27064091_SNP [dm6]	C	T	2.731e^-4	0.954	UTR_5_PRIME Nep5 UPSTREAM Nep5 DOWNSTREAM spz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1770983	2R_1770983_SNP [dm3] 2R_5883478_SNP [dm6]	C	T	2.732e^-4	0.954	INTERGENIC
3R	26433665	3R_26433665_SNP [dm3] 3R_30607943_SNP [dm6]	C	T	2.735e^-4	0.954	SYNONYMOUS_CODING CG31016
2L	14475207	2L_14475207_SNP [dm3] 2L_14475207_SNP [dm6]	T	G	2.743e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16333028	2L_16333028_SNP [dm3] 2L_16333028_SNP [dm6]	T	G	2.746e^-4	0.954	NON_SYNONYMOUS_CODING CG31817
2R	13205917	2R_13205917_SNP [dm3] 2R_17318412_SNP [dm6]	G	A	2.747e^-4	0.954	INTRON mbl
X	6468048	X_6468048_SNP [dm3] X_6574015_SNP [dm6]	T	A	2.751e^-4	0.954	INTRON CG34417
3R	26279005	3R_26279005_SNP [dm3] 3R_30453283_SNP [dm6]	C	T	2.753e^-4	0.954	INTRON aralar1
2R	11322498	2R_11322498_SNP [dm3] 2R_15434993_SNP [dm6]	A	T	2.754e^-4	0.954	INTRON CG43729	TF binding site mE1_TFBS_chinmo
X	13420186	X_13420186_SNP [dm3] X_13526153_SNP [dm6]	G	A	2.757e^-4	0.954	UTR_3_PRIME Neto
2L	11163395	2L_11163395_SNP [dm3] 2L_11163395_SNP [dm6]	A	G	2.758e^-4	0.954	SPLICE_SITE_REGION Ca-beta INTRON Ca-beta
X	9033927	X_9033927_SNP [dm3] X_9139894_SNP [dm6]	A	T	2.764e^-4	0.954	DOWNSTREAM CR44517 INTERGENIC
3L	18488232	3L_18488232_INS [dm3] 3L_18495132_INS [dm6]	A	ATGGAGAAA	2.770e^-4	0.954	INTRON AstC-R2
2L	4773816	2L_4773816_SNP [dm3] 2L_4773816_SNP [dm6]	A	G	2.782e^-4	0.954	INTRON CG15630	TF binding site mE1_TFBS_hkb
2L	15865289	2L_15865289_SNP [dm3] 2L_15865289_SNP [dm6]	C	T	2.782e^-4	0.954	INTRON CG42792
3R	14525061	3R_14525061_SNP [dm3] 3R_18699339_SNP [dm6]	G	A	2.783e^-4	0.954	INTERGENIC
X	14328972	X_14328972_SNP [dm3] X_14434939_SNP [dm6]	T	C	2.784e^-4	0.954	INTRON dpr8
3R	10900613	3R_10900613_SNP [dm3] 3R_15074891_SNP [dm6]	A	G	2.805e^-4	0.954	INTRON dpr9
2L	14076054	2L_14076054_SNP [dm3] 2L_14076054_SNP [dm6]	A	T	2.805e^-4	0.954	INTRON nAChRalpha5
2R	17330365	2R_17330365_SNP [dm3] 2R_21442860_SNP [dm6]	G	A	2.810e^-4	0.954	INTRON Sdc
3L	18428807	3L_18428807_SNP [dm3] 3L_18435707_SNP [dm6]	C	T	2.811e^-4	0.954	INTERGENIC
3L	14232058	3L_14232058_SNP [dm3] 3L_14238958_SNP [dm6]	A	G	2.813e^-4	0.954	DOWNSTREAM CG7906 EXON CR45399
2R	17187923	2R_17187923_SNP [dm3] 2R_21300418_SNP [dm6]	T	C	2.815e^-4	0.954	INTRON CG42672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5442823	2L_5442823_SNP [dm3] 2L_5442823_SNP [dm6]	A	T	2.817e^-4	0.954	INTERGENIC
2R	17567174	2R_17567174_SNP [dm3] 2R_21679669_SNP [dm6]	G	T	2.821e^-4	0.954	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19113982	2R_19113982_SNP [dm3] 2R_23226459_SNP [dm6]	G	A	2.832e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2601001	X_2601001_SNP [dm3] X_2706968_SNP [dm6]	G	T	2.832e^-4	0.954	SYNONYMOUS_CODING CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad
3R	14300769	3R_14300769_SNP [dm3] 3R_18475047_SNP [dm6]	T	C	2.841e^-4	0.954	INTRON fru
3L	3051031	3L_3051031_SNP [dm3] 3L_3051031_SNP [dm6]	T	C	2.842e^-4	0.954	SYNONYMOUS_CODING CG32485 DOWNSTREAM Sk2	TF binding site BDTNP1_TFBS_hb
2R	4268402	2R_4268402_SNP [dm3] 2R_8380897_SNP [dm6]	C	G	2.844e^-4	0.954	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11168676	2L_11168676_SNP [dm3] 2L_11168676_SNP [dm6]	T	C	2.846e^-4	0.954	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14475058	2L_14475058_SNP [dm3] 2L_14475058_SNP [dm6]	A	C	2.848e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	23281538	3R_23281538_SNP [dm3] 3R_27455816_SNP [dm6]	G	C	2.856e^-4	0.954	INTERGENIC
3R	22515933	3R_22515933_SNP [dm3] 3R_26690211_SNP [dm6]	T	A	2.862e^-4	0.954	INTERGENIC
2L	14475184	2L_14475184_SNP [dm3] 2L_14475184_SNP [dm6]	A	G	2.872e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	25365399	3R_25365399_SNP [dm3] 3R_29539677_SNP [dm6]	A	C	2.874e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5033133	X_5033133_SNP [dm3] X_5139100_SNP [dm6]	T	C	2.877e^-4	0.954	INTRON rg & 1 other
3R	14299628	3R_14299628_SNP [dm3] 3R_18473906_SNP [dm6]	G	A	2.880e^-4	0.954	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14299629	3R_14299629_SNP [dm3] 3R_18473907_SNP [dm6]	G	A	2.880e^-4	0.954	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14300669	3R_14300669_SNP [dm3] 3R_18474947_SNP [dm6]	T	C	2.880e^-4	0.954	INTRON fru
3R	14300745	3R_14300745_SNP [dm3] 3R_18475023_SNP [dm6]	T	A	2.880e^-4	0.954	INTRON fru
3L	6505588	3L_6505588_SNP [dm3] 3L_6512488_SNP [dm6]	G	A	2.880e^-4	0.954	INTRON sfl
3R	10672747	3R_10672747_INS [dm3] 3R_14847025_INS [dm6]	A	AA	2.881e^-4	0.954	DOWNSTREAM CG3610 INTRON btsz
2R	8440187	2R_8440187_SNP [dm3] 2R_12552682_SNP [dm6]	G	C	2.882e^-4	0.954	INTRON fra
3R	18919856	3R_18919856_SNP [dm3] 3R_23094134_SNP [dm6]	C	A	2.896e^-4	0.954	SYNONYMOUS_CODING CG17110 UTR_3_PRIME CG6726 DOWNSTREAM CG6726 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22141783	3R_22141783_SNP [dm3] 3R_26316061_SNP [dm6]	T	A	2.896e^-4	0.954	INTERGENIC
3L	3250311	3L_3250311_SNP [dm3] 3L_3250311_SNP [dm6]	C	T	2.901e^-4	0.954	UPSTREAM mir-282 EXON CR43626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	14744938	3L_14744938_SNP [dm3] 3L_14751838_SNP [dm6]	T	G	2.917e^-4	0.954	INTRON Trl & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11869383	2R_11869383_SNP [dm3] 2R_15981878_SNP [dm6]	C	T	2.917e^-4	0.954	SYNONYMOUS_CODING Strn-Mlck
2L	6143836	2L_6143836_SNP [dm3] 2L_6143836_SNP [dm6]	C	G	2.922e^-4	0.954	NON_SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9015180	X_9015180_SNP [dm3] X_9121147_SNP [dm6]	T	G	2.924e^-4	0.954	UPSTREAM CR45539 DOWNSTREAM fend INTERGENIC
2L	6146028	2L_6146028_SNP [dm3] 2L_6146028_SNP [dm6]	G	T	2.926e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25066047	3R_25066047_SNP [dm3] 3R_29240325_SNP [dm6]	G	A	2.933e^-4	0.954	START_GAINED CG31427 UTR_5_PRIME CG31427 UPSTREAM CG31427 DOWNSTREAM CG31445
3R	22132423	3R_22132423_SNP [dm3] 3R_26306701_SNP [dm6]	T	G	2.933e^-4	0.954	INTERGENIC
2R	16492539	2R_16492539_SNP [dm3] 2R_20605034_SNP [dm6]	C	T	2.949e^-4	0.954	SYNONYMOUS_CODING bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3333526	2R_3333526_SNP [dm3] 2R_7446021_SNP [dm6]	C	T	2.954e^-4	0.954	UPSTREAM kappaB-Ras & 1 other DOWNSTREAM fa2h INTERGENIC	TF binding site mE1_TFBS_ttk
3R	10855435	3R_10855435_SNP [dm3] 3R_15029713_SNP [dm6]	T	A	2.958e^-4	0.954	INTERGENIC
3R	22149773	3R_22149773_SNP [dm3] 3R_26324051_SNP [dm6]	G	T	2.965e^-4	0.954	DOWNSTREAM CR42765 INTRON CG33970
3R	18523916	3R_18523916_SNP [dm3] 3R_22698194_SNP [dm6]	C	T	2.970e^-4	0.954	UPSTREAM Cyp6d4 DOWNSTREAM cd INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17357403	2R_17357403_DEL [dm3] 2R_21469898_DEL [dm6]	AGA	A	2.988e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	16336080	2L_16336080_SNP [dm3] 2L_16336080_SNP [dm6]	T	A	2.988e^-4	0.954	NON_SYNONYMOUS_CODING CG31817
2R	20548498	2R_20548498_SNP [dm3] 2R_24660975_SNP [dm6]	T	A	2.991e^-4	0.954	UPSTREAM CG3663 INTERGENIC
2R	12388018	2R_12388018_SNP [dm3] 2R_16500513_SNP [dm6]	C	A	2.998e^-4	0.954	UTR_5_PRIME Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27384809	3R_27384809_SNP [dm3] 3R_31559087_SNP [dm6]	A	T	3.006e^-4	0.954	INTRON nyo
2L	6142258	2L_6142258_SNP [dm3] 2L_6142258_SNP [dm6]	C	T	3.009e^-4	0.954	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18919934	3R_18919934_SNP [dm3] 3R_23094212_SNP [dm6]	C	T	3.015e^-4	0.954	SYNONYMOUS_CODING CG17110 UTR_3_PRIME CG6726 DOWNSTREAM CG6726 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3169484	2R_3169484_SNP [dm3] 2R_7281979_SNP [dm6]	A	G	3.016e^-4	0.954	UPSTREAM pwn DOWNSTREAM Incenp INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12388012	2R_12388012_SNP [dm3] 2R_16500507_SNP [dm6]	A	G	3.021e^-4	0.954	UTR_5_PRIME Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12388020	2R_12388020_SNP [dm3] 2R_16500515_SNP [dm6]	G	A	3.021e^-4	0.954	UTR_5_PRIME Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12388031	2R_12388031_SNP [dm3] 2R_16500526_SNP [dm6]	T	C	3.021e^-4	0.954	UTR_5_PRIME Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3833569	2L_3833569_SNP [dm3] 2L_3833569_SNP [dm6]	C	A	3.022e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	10513607	3L_10513607_SNP [dm3] 3L_10520507_SNP [dm6]	C	T	3.030e^-4	0.954	INTRON A2bp1
3R	3787448	3R_3787448_SNP [dm3] 3R_7961726_SNP [dm6]	T	C	3.035e^-4	0.954	INTRON dsx
3R	26468873	3R_26468873_SNP [dm3] 3R_30643151_SNP [dm6]	T	C	3.038e^-4	0.954	DOWNSTREAM CG31013 INTERGENIC
3R	10660612	3R_10660612_SNP [dm3] 3R_14834890_SNP [dm6]	A	C	3.039e^-4	0.954	INTRON btsz
2L	21908152	2L_21908152_SNP [dm3] 2L_21908152_SNP [dm6]	G	A	3.041e^-4	0.954	SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2L	2225620	2L_2225620_SNP [dm3] 2L_2225620_SNP [dm6]	A	G	3.045e^-4	0.954	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi
2R	17210577	2R_17210577_SNP [dm3] 2R_21323072_SNP [dm6]	A	C	3.047e^-4	0.954	SPLICE_SITE_REGION CG30394 UTR_5_PRIME CG30394 UPSTREAM dom INTRON CG30394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5602746	3L_5602746_SNP [dm3] 3L_5609646_SNP [dm6]	C	G	3.054e^-4	0.954	INTERGENIC
2R	17329524	2R_17329524_SNP [dm3] 2R_21442019_SNP [dm6]	C	T	3.059e^-4	0.954	INTRON Sdc
3R	26161202	3R_26161202_SNP [dm3] 3R_30335480_SNP [dm6]	G	C	3.064e^-4	0.954	INTRON hdc
3R	6346459	3R_6346459_SNP [dm3] 3R_10520737_SNP [dm6]	G	A	3.064e^-4	0.954	INTRON hth
3L	14563086	3L_14563086_SNP [dm3] 3L_14569986_SNP [dm6]	T	G	3.068e^-4	0.954	INTERGENIC
2R	2425413	2R_2425413_SNP [dm3] 2R_6537908_SNP [dm6]	T	C	3.096e^-4	0.954	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9015092	X_9015092_SNP [dm3] X_9121059_SNP [dm6]	A	T	3.102e^-4	0.954	UPSTREAM CR45539 DOWNSTREAM fend INTERGENIC
3R	15150620	3R_15150620_SNP [dm3] 3R_19324898_SNP [dm6]	A	G	3.102e^-4	0.954	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	6467998	X_6467998_SNP [dm3] X_6573965_SNP [dm6]	T	C	3.105e^-4	0.954	INTRON CG34417
2L	14335250	2L_14335250_SNP [dm3] 2L_14335250_SNP [dm6]	G	A	3.105e^-4	0.954	INTRON CG33090
2R	18228520	2R_18228520_SNP [dm3] 2R_22341015_SNP [dm6]	A	G	3.110e^-4	0.954	SYNONYMOUS_CODING Liprin-gamma	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3166962	2R_3166962_SNP [dm3] 2R_7279457_SNP [dm6]	G	A	3.111e^-4	0.954	NON_SYNONYMOUS_CODING Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15777683	2L_15777683_SNP [dm3] 2L_15777683_SNP [dm6]	C	A	3.112e^-4	0.954	UPSTREAM CG43760 INTERGENIC
2L	16332928	2L_16332928_SNP [dm3] 2L_16332928_SNP [dm6]	C	T	3.115e^-4	0.954	NON_SYNONYMOUS_CODING CG31817
3R	23550257	3R_23550257_SNP [dm3] 3R_27724535_SNP [dm6]	G	T	3.122e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21705337	3R_21705337_SNP [dm3] 3R_25879615_SNP [dm6]	T	C	3.123e^-4	0.954	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2254083	X_2254083_SNP [dm3] X_2360050_SNP [dm6]	A	T	3.124e^-4	0.954	INTRON ptr
3L	558331	3L_558331_SNP [dm3] 3L_558331_SNP [dm6]	G	C	3.131e^-4	0.954	INTRON hipk
3R	22384088	3R_22384088_SNP [dm3] 3R_26558366_SNP [dm6]	C	G	3.136e^-4	0.954	INTRON scrib
3R	22525215	3R_22525215_SNP [dm3] 3R_26699493_SNP [dm6]	T	C	3.137e^-4	0.954	INTRON amon
3R	10665138	3R_10665138_SNP [dm3] 3R_14839416_SNP [dm6]	T	C	3.143e^-4	0.954	INTRON btsz
3L	15796061	3L_15796061_SNP [dm3] 3L_15802961_SNP [dm6]	T	A	3.159e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10890151	2R_10890151_SNP [dm3] 2R_15002646_SNP [dm6]	A	G	3.164e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	7320177	3R_7320177_SNP [dm3] 3R_11494455_SNP [dm6]	C	T	3.169e^-4	0.954	INTERGENIC
2R	13273989	2R_13273989_SNP [dm3] 2R_17386484_SNP [dm6]	G	A	3.193e^-4	0.954	DOWNSTREAM CR44344 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12556363	3L_12556363_SNP [dm3] 3L_12563263_SNP [dm6]	G	C	3.195e^-4	0.954	INTRON sowah
2R	2797170	2R_2797170_MNP [dm3] 2R_6909665_MNP [dm6]	ACA	TGT	3.195e^-4	0.954	INTRON CG30158
3L	6149530	3L_6149530_SNP [dm3] 3L_6156430_SNP [dm6]	A	G	3.216e^-4	0.954	DOWNSTREAM CG13297 INTERGENIC
3L	6438965	3L_6438965_SNP [dm3] 3L_6445865_SNP [dm6]	T	G	3.220e^-4	0.954	INTRON CG42747
3L	6782255	3L_6782255_SNP [dm3] 3L_6789155_SNP [dm6]	G	C	3.227e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17950701	2L_17950701_DEL [dm3] 2L_17950701_DEL [dm6]	ACCACGA	A	3.227e^-4	0.954	INTRON CR44398 EXON CR44397
3R	26432029	3R_26432029_SNP [dm3] 3R_30606307_SNP [dm6]	T	A	3.236e^-4	0.954	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	13226345	3L_13226345_SNP [dm3] 3L_13233245_SNP [dm6]	G	A	3.237e^-4	0.954	INTRON caps
2L	6767952	2L_6767952_SNP [dm3] 2L_6767952_SNP [dm6]	T	C	3.242e^-4	0.954	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3R	1779179	3R_1779179_SNP [dm3] 3R_5953457_SNP [dm6]	T	C	3.250e^-4	0.954	INTRON CG34113
2R	20675880	2R_20675880_SNP [dm3] 2R_24788357_SNP [dm6]	A	G	3.268e^-4	0.954	SYNONYMOUS_CODING Reg-5 UPSTREAM key	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4260238	X_4260238_SNP [dm3] X_4366205_SNP [dm6]	A	T	3.268e^-4	0.954	UPSTREAM CG3626 & 1 other DOWNSTREAM mir-303 & 1 other EXON mir-303	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	6142455	2L_6142455_SNP [dm3] 2L_6142455_SNP [dm6]	G	A	3.270e^-4	0.954	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27233803	3R_27233803_SNP [dm3] 3R_31408081_SNP [dm6]	A	T	3.290e^-4	0.954	INTRON Gprk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17341568	2R_17341568_SNP [dm3] 2R_21454063_SNP [dm6]	A	T	3.297e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	4259515	X_4259515_SNP [dm3] X_4365482_SNP [dm6]	T	G	3.301e^-4	0.954	UPSTREAM CG3626 DOWNSTREAM mir-982 & 2 others INTERGENIC
3L	10456350	3L_10456350_SNP [dm3] 3L_10463250_SNP [dm6]	A	C	3.304e^-4	0.954	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8722460	3L_8722460_SNP [dm3] 3L_8729360_SNP [dm6]	G	T	3.321e^-4	0.954	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
2L	9039275	2L_9039275_SNP [dm3] 2L_9039275_SNP [dm6]	G	T	3.323e^-4	0.954	INTERGENIC
3L	11246204	3L_11246204_SNP [dm3] 3L_11253104_SNP [dm6]	T	A	3.333e^-4	0.954	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14646132	2R_14646132_SNP [dm3] 2R_18758627_SNP [dm6]	A	T	3.334e^-4	0.954	INTRON Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5359752	2R_5359752_SNP [dm3] 2R_9472247_SNP [dm6]	G	A	3.343e^-4	0.954	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad
3R	22954817	3R_22954817_SNP [dm3] 3R_27129095_SNP [dm6]	A	G	3.347e^-4	0.954	INTRON CG6051
2R	5359733	2R_5359733_SNP [dm3] 2R_9472228_SNP [dm6]	G	C	3.348e^-4	0.954	NON_SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15961502	2R_15961502_SNP [dm3] 2R_20073997_SNP [dm6]	C	G	3.354e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16933519	2R_16933519_SNP [dm3] 2R_21046014_SNP [dm6]	T	A	3.354e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17919160	2L_17919160_SNP [dm3] 2L_17919160_SNP [dm6]	A	G	3.359e^-4	0.954	UPSTREAM CR43274 INTERGENIC
3R	19976271	3R_19976271_SNP [dm3] 3R_24150549_SNP [dm6]	C	T	3.362e^-4	0.954	UTR_3_PRIME p38a UPSTREAM p38c	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4053198	2L_4053198_SNP [dm3] 2L_4053198_SNP [dm6]	C	T	3.367e^-4	0.954	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14829502	3L_14829502_SNP [dm3] 3L_14836402_SNP [dm6]	A	T	3.367e^-4	0.954	INTRON CG17839
3L	10648547	3L_10648547_SNP [dm3] 3L_10655447_SNP [dm6]	C	A	3.381e^-4	0.954	INTRON CG32066
3R	18690333	3R_18690333_SNP [dm3] 3R_22864611_SNP [dm6]	T	C	3.385e^-4	0.954	INTERGENIC
X	11661801	X_11661801_SNP [dm3] X_11767768_SNP [dm6]	T	A	3.403e^-4	0.954	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22221341	3R_22221341_SNP [dm3] 3R_26395619_SNP [dm6]	G	A	3.412e^-4	0.954	INTERGENIC
3L	901322	3L_901322_DEL [dm3] 3L_901322_DEL [dm6]	AA	A	3.418e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12388066	2R_12388066_SNP [dm3] 2R_16500561_SNP [dm6]	C	A	3.420e^-4	0.954	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26609651	3R_26609651_SNP [dm3] 3R_30783929_SNP [dm6]	C	A	3.421e^-4	0.954	UPSTREAM CR45189 INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22611854	3R_22611854_SNP [dm3] 3R_26786132_SNP [dm6]	G	A	3.423e^-4	0.954	DOWNSTREAM CG42790 INTERGENIC
2L	16332930	2L_16332930_SNP [dm3] 2L_16332930_SNP [dm6]	C	T	3.431e^-4	0.954	SYNONYMOUS_CODING CG31817
3R	24030984	3R_24030984_SNP [dm3] 3R_28205262_SNP [dm6]	C	T	3.432e^-4	0.954	INTRON CG34354
3R	25658603	3R_25658603_SNP [dm3] 3R_29832881_SNP [dm6]	T	C	3.439e^-4	0.954	INTRON Atg16
3L	8766072	3L_8766072_SNP [dm3] 3L_8772972_SNP [dm6]	C	T	3.453e^-4	0.954	INTRON Fhos
3R	18283147	3R_18283147_SNP [dm3] 3R_22457425_SNP [dm6]	T	C	3.455e^-4	0.954	SYNONYMOUS_CODING CG34376
3R	16631604	3R_16631604_SNP [dm3] 3R_20805882_SNP [dm6]	C	T	3.469e^-4	0.954	DOWNSTREAM Syp INTRON Syp	TF binding site mE1_TFBS_inv
X	3436979	X_3436979_DEL [dm3] X_3542946_DEL [dm6]	AT	A	3.470e^-4	0.954	INTRON CG32791
2R	18285012	2R_18285012_SNP [dm3] 2R_22397507_SNP [dm6]	C	A	3.474e^-4	0.954	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18015485	2L_18015485_SNP [dm3] 2L_18015485_SNP [dm6]	C	T	3.481e^-4	0.954	INTRON rdo	regulatory region REDfly_CRMs
2R	17366252	2R_17366252_SNP [dm3] 2R_21478747_SNP [dm6]	A	G	3.482e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	17976920	2L_17976920_SNP [dm3] 2L_17976920_SNP [dm6]	A	T	3.482e^-4	0.954	SYNONYMOUS_CODING btv
2R	17331884	2R_17331884_SNP [dm3] 2R_21444379_SNP [dm6]	A	T	3.485e^-4	0.954	INTRON Sdc
2R	17176924	2R_17176924_SNP [dm3] 2R_21289419_SNP [dm6]	C	T	3.502e^-4	0.954	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3R	22516162	3R_22516162_SNP [dm3] 3R_26690440_SNP [dm6]	A	T	3.516e^-4	0.954	INTERGENIC
3L	6505648	3L_6505648_SNP [dm3] 3L_6512548_SNP [dm6]	C	T	3.520e^-4	0.954	INTRON sfl
3L	12804870	3L_12804870_SNP [dm3] 3L_12811770_SNP [dm6]	G	T	3.527e^-4	0.954	NON_SYNONYMOUS_CODING Sap130	TF binding site mE1_TFBS_cad
X	16857565	X_16857565_SNP [dm3] X_16963532_SNP [dm6]	T	C	3.533e^-4	0.954	INTRON CG9086
2R	18153815	2R_18153815_SNP [dm3] 2R_22266310_SNP [dm6]	A	T	3.536e^-4	0.954	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14744939	3L_14744939_SNP [dm3] 3L_14751839_SNP [dm6]	T	G	3.538e^-4	0.954	INTRON Trl & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	7428868	X_7428868_SNP [dm3] X_7534835_SNP [dm6]	G	A	3.546e^-4	0.954	DOWNSTREAM CG32720 INTRON CG32719
3R	13430528	3R_13430528_DEL [dm3] 3R_17604806_DEL [dm6]	GT	C	3.551e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	10098144	3L_10098144_SNP [dm3] 3L_10105044_SNP [dm6]	T	C	3.552e^-4	0.954	INTRON dpr6
3R	9425643	3R_9425643_SNP [dm3] 3R_13599921_SNP [dm6]	C	T	3.555e^-4	0.954	INTERGENIC
3R	25661926	3R_25661926_SNP [dm3] 3R_29836204_SNP [dm6]	C	T	3.556e^-4	0.954	SYNONYMOUS_CODING CG42592 UPSTREAM CG15510 INTRON CG15510
2L	20724603	2L_20724603_SNP [dm3] 2L_20724603_SNP [dm6]	A	T	3.559e^-4	0.954	UTR_3_PRIME CG9316
2R	17330474	2R_17330474_SNP [dm3] 2R_21442969_SNP [dm6]	C	A	3.574e^-4	0.954	INTRON Sdc
2L	16335874	2L_16335874_SNP [dm3] 2L_16335874_SNP [dm6]	T	C	3.580e^-4	0.954	NON_SYNONYMOUS_CODING CG31817
3R	20401315	3R_20401315_SNP [dm3] 3R_24575593_SNP [dm6]	A	T	3.582e^-4	0.954	INTRON CG13624
3L	3343725	3L_3343725_SNP [dm3] 3L_3343725_SNP [dm6]	A	G	3.586e^-4	0.954	INTRON kst
2L	4773554	2L_4773554_SNP [dm3] 2L_4773554_SNP [dm6]	T	G	3.590e^-4	0.954	INTRON CG15630
2L	2019193	2L_2019193_SNP [dm3] 2L_2019193_SNP [dm6]	G	A	3.597e^-4	0.954	INTRON CG4238	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	2423256	2R_2423256_SNP [dm3] 2R_6535751_SNP [dm6]	A	C	3.599e^-4	0.954	INTRON jing
X	5571856	X_5571856_SNP [dm3] X_5677823_SNP [dm6]	C	T	3.613e^-4	0.954	UPSTREAM Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20834312	3R_20834312_SNP [dm3] 3R_25008590_SNP [dm6]	G	A	3.622e^-4	0.954	INTRON tnc	TF binding site mE1_TFBS_chinmo
3L	12124030	3L_12124030_SNP [dm3] 3L_12130930_SNP [dm6]	C	T	3.632e^-4	0.954	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17210785	2R_17210785_SNP [dm3] 2R_21323280_SNP [dm6]	T	C	3.645e^-4	0.954	UTR_5_PRIME CG30394 UPSTREAM dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	6468016	X_6468016_SNP [dm3] X_6573983_SNP [dm6]	T	A	3.648e^-4	0.954	INTRON CG34417
X	7856522	X_7856522_SNP [dm3] X_7962489_SNP [dm6]	C	T	3.659e^-4	0.954	INTRON sws	TF binding site mE1_TFBS_chinmo
2R	17584341	2R_17584341_SNP [dm3] 2R_21696836_SNP [dm6]	G	A	3.662e^-4	0.954	UPSTREAM CngB DOWNSTREAM HmgZ INTRON CngB
3R	22256046	3R_22256046_SNP [dm3] 3R_26430324_SNP [dm6]	T	G	3.665e^-4	0.954	INTERGENIC
3R	26734499	3R_26734499_DEL [dm3] 3R_30908777_DEL [dm6]	ATTTTTATTTAA...	A	3.666e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26734559	3R_26734559_SNP [dm3] 3R_30908837_SNP [dm6]	C	T	3.666e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26734834	3R_26734834_SNP [dm3] 3R_30909112_SNP [dm6]	T	C	3.666e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26735065	3R_26735065_SNP [dm3] 3R_30909343_SNP [dm6]	G	C	3.666e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26737375	3R_26737375_SNP [dm3] 3R_30911653_SNP [dm6]	C	G	3.666e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26740816	3R_26740816_SNP [dm3] 3R_30915094_SNP [dm6]	T	C	3.666e^-4	0.954	INTRON Ptx1	TF binding site mE1_TFBS_cad
3R	26740883	3R_26740883_SNP [dm3] 3R_30915161_SNP [dm6]	C	T	3.666e^-4	0.954	INTRON Ptx1	TF binding site mE1_TFBS_cad
2L	15445625	2L_15445625_SNP [dm3] 2L_15445625_SNP [dm6]	G	C	3.668e^-4	0.954	INTERGENIC
3L	11246151	3L_11246151_SNP [dm3] 3L_11253051_SNP [dm6]	T	A	3.671e^-4	0.954	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	16813161	2L_16813161_SNP [dm3] 2L_16813161_SNP [dm6]	T	G	3.671e^-4	0.954	INTRON CG13280 & 1 other
2R	14646088	2R_14646088_SNP [dm3] 2R_18758583_SNP [dm6]	G	C	3.671e^-4	0.954	NON_SYNONYMOUS_CODING Jabba SPLICE_SITE_REGION Jabba INTRON Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22610221	3R_22610221_SNP [dm3] 3R_26784499_SNP [dm6]	A	G	3.677e^-4	0.954	SYNONYMOUS_CODING CG42790 UPSTREAM CG42789
2R	2520252	2R_2520252_SNP [dm3] 2R_6632747_SNP [dm6]	G	A	3.682e^-4	0.954	UPSTREAM Vha16-1 DOWNSTREAM Trap1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	6112781	2L_6112781_SNP [dm3] 2L_6112781_SNP [dm6]	T	A	3.683e^-4	0.954	INTRON stai
2L	14475218	2L_14475218_SNP [dm3] 2L_14475218_SNP [dm6]	G	A	3.698e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16064943	2R_16064943_SNP [dm3] 2R_20177438_SNP [dm6]	T	A	3.700e^-4	0.954	INTERGENIC
3L	10512478	3L_10512478_SNP [dm3] 3L_10519378_SNP [dm6]	C	A	3.703e^-4	0.954	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14646056	2R_14646056_SNP [dm3] 2R_18758551_SNP [dm6]	T	C	3.705e^-4	0.954	SYNONYMOUS_CODING Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6467944	X_6467944_SNP [dm3] X_6573911_SNP [dm6]	G	A	3.722e^-4	0.954	INTRON CG34417
3L	2115931	3L_2115931_SNP [dm3] 3L_2115931_SNP [dm6]	T	A	3.725e^-4	0.954	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
2L	3675997	2L_3675997_SNP [dm3] 2L_3675997_SNP [dm6]	G	T	3.728e^-4	0.954	INTRON CG34340
2R	8725427	2R_8725427_SNP [dm3] 2R_12837922_SNP [dm6]	C	G	3.731e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18304696	3L_18304696_SNP [dm3] 3L_18311596_SNP [dm6]	T	C	3.732e^-4	0.954	INTERGENIC
2R	11179259	2R_11179259_SNP [dm3] 2R_15291754_SNP [dm6]	G	A	3.733e^-4	0.954	UPSTREAM Trpm INTRON Trpm
3L	8268933	3L_8268933_SNP [dm3] 3L_8275833_SNP [dm6]	T	A	3.733e^-4	0.954	INTRON Dscam4
2R	5356904	2R_5356904_INS [dm3] 2R_9469399_INS [dm6]	A	AGGTTA	3.744e^-4	0.954	INTRON Camta	TF binding site mE1_TFBS_inv
2L	4708032	2L_4708032_SNP [dm3] 2L_4708032_SNP [dm6]	T	A	3.749e^-4	0.954	INTRON CG34351
2L	11173821	2L_11173821_INS [dm3] 2L_11173821_INS [dm6]	C	CTCC	3.754e^-4	0.954	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
2L	954386	2L_954386_SNP [dm3] 2L_954386_SNP [dm6]	C	T	3.755e^-4	0.954	INTRON CG4341	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	1069079	3L_1069079_SNP [dm3] 3L_1069079_SNP [dm6]	T	C	3.763e^-4	0.954	INTRON bab1
2L	16829959	2L_16829959_SNP [dm3] 2L_16829959_SNP [dm6]	G	A	3.764e^-4	0.954	SYNONYMOUS_CODING CG31739	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22269858	3R_22269858_SNP [dm3] 3R_26444136_SNP [dm6]	C	G	3.781e^-4	0.954	INTRON tx
2L	6935244	2L_6935244_SNP [dm3] 2L_6935244_SNP [dm6]	A	G	3.786e^-4	0.954	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
2R	15944634	2R_15944634_SNP [dm3] 2R_20057129_SNP [dm6]	G	C	3.788e^-4	0.954	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3162256	2R_3162256_SNP [dm3] 2R_7274751_SNP [dm6]	G	A	3.791e^-4	0.954	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_chinmo
3L	16361976	3L_16361976_SNP [dm3] 3L_16368876_SNP [dm6]	A	T	3.795e^-4	0.954	UPSTREAM CG18814 INTRON CG4842
2R	15830158	2R_15830158_INS [dm3] 2R_19942653_INS [dm6]	T	TTTA	3.800e^-4	0.954	INTERGENIC
2R	5359749	2R_5359749_SNP [dm3] 2R_9472244_SNP [dm6]	T	C	3.803e^-4	0.954	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad
2L	14414124	2L_14414124_SNP [dm3] 2L_14414124_SNP [dm6]	G	A	3.825e^-4	0.954	INTERGENIC
3R	4358353	3R_4358353_SNP [dm3] 3R_8532631_SNP [dm6]	G	A	3.829e^-4	0.954	INTERGENIC
3R	14300774	3R_14300774_SNP [dm3] 3R_18475052_SNP [dm6]	A	G	3.831e^-4	0.954	INTRON fru
2L	6983036	2L_6983036_SNP [dm3] 2L_6983036_SNP [dm6]	T	G	3.832e^-4	0.954	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12565813	3L_12565813_SNP [dm3] 3L_12572713_SNP [dm6]	A	C	3.842e^-4	0.954	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
X	13593469	X_13593469_SNP [dm3] X_13699436_SNP [dm6]	C	T	3.847e^-4	0.954	UPSTREAM NnaD INTRON CG9940 & 1 other
2R	567033	2R_567033_SNP [dm3] 2R_4679528_SNP [dm6]	C	T	3.847e^-4	0.954	INTERGENIC
2R	16137914	2R_16137914_DEL [dm3] 2R_20250409_DEL [dm6]	AATTATTGAGGCTAA...	A	3.851e^-4	0.954	INTRON CG9864
2L	17988388	2L_17988388_SNP [dm3] 2L_17988388_SNP [dm6]	T	C	3.855e^-4	0.954	UTR_3_PRIME CG5681
X	5033111	X_5033111_MNP [dm3] X_5139078_MNP [dm6]	GCA	ATT	3.858e^-4	0.954	INTRON rg & 1 other
3L	4006596	3L_4006596_SNP [dm3] 3L_4006596_SNP [dm6]	T	C	3.864e^-4	0.954	UTR_3_PRIME CG14985
2R	18178127	2R_18178127_SNP [dm3] 2R_22290622_SNP [dm6]	C	A	3.867e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1366563	2L_1366563_SNP [dm3] 2L_1366563_SNP [dm6]	T	A	3.905e^-4	0.954	INTERGENIC
3L	4860551	3L_4860551_SNP [dm3] 3L_4860551_SNP [dm6]	T	C	3.916e^-4	0.954	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	11815317	3L_11815317_SNP [dm3] 3L_11822217_SNP [dm6]	T	A	3.916e^-4	0.954	UPSTREAM RpL10Ab & 3 others INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	21188715	X_21188715_SNP [dm3] X_21317688_SNP [dm6]	T	A	3.932e^-4	0.954	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
2R	12027699	2R_12027699_SNP [dm3] 2R_16140194_SNP [dm6]	A	G	3.932e^-4	0.954	INTRON Got1
3R	25887381	3R_25887381_SNP [dm3] 3R_30061659_SNP [dm6]	C	A	3.933e^-4	0.954	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17499471	2L_17499471_SNP [dm3] 2L_17499471_SNP [dm6]	G	A	3.938e^-4	0.954	SYNONYMOUS_CODING CG6412 UPSTREAM CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16857708	X_16857708_SNP [dm3] X_16963675_SNP [dm6]	T	G	3.939e^-4	0.954	INTRON CG9086
2R	7816406	2R_7816406_SNP [dm3] 2R_11928901_SNP [dm6]	T	C	3.942e^-4	0.954	DOWNSTREAM CR44312 INTERGENIC
2R	19262589	2R_19262589_SNP [dm3] 2R_23375066_SNP [dm6]	C	T	3.948e^-4	0.954	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
2L	1366580	2L_1366580_SNP [dm3] 2L_1366580_SNP [dm6]	A	T	3.956e^-4	0.954	INTERGENIC
3R	26527128	3R_26527128_SNP [dm3] 3R_30701406_SNP [dm6]	G	A	3.957e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22134769	3R_22134769_DEL [dm3] 3R_26309047_DEL [dm6]	AA	A	3.958e^-4	0.954	INTERGENIC
2L	7287572	2L_7287572_INS [dm3] 2L_7287572_INS [dm6]	T	TTAACTTCCTAA...	3.965e^-4	0.954	INTERGENIC
X	9015182	X_9015182_DEL [dm3] X_9121149_DEL [dm6]	TTTTT	T	3.969e^-4	0.954	UPSTREAM CR45539 DOWNSTREAM fend INTERGENIC
3R	21045185	3R_21045185_SNP [dm3] 3R_25219463_SNP [dm6]	T	C	3.974e^-4	0.954	DOWNSTREAM CG31106 INTRON CG31103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17345329	2R_17345329_SNP [dm3] 2R_21457824_SNP [dm6]	G	C	3.974e^-4	0.954	INTRON Sdc
2L	16333021	2L_16333021_SNP [dm3] 2L_16333021_SNP [dm6]	G	A	3.983e^-4	0.954	NON_SYNONYMOUS_CODING CG31817
3R	20921927	3R_20921927_SNP [dm3] 3R_25096205_SNP [dm6]	A	T	4.005e^-4	0.954	DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14475265	2L_14475265_SNP [dm3] 2L_14475265_SNP [dm6]	T	G	4.005e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	7748745	X_7748745_SNP [dm3] X_7854712_SNP [dm6]	C	A	4.007e^-4	0.954	UPSTREAM CG10920 INTERGENIC
3R	25013482	3R_25013482_SNP [dm3] 3R_29187760_SNP [dm6]	T	G	4.007e^-4	0.954	INTRON CG14509
2R	17331880	2R_17331880_SNP [dm3] 2R_21444375_SNP [dm6]	T	A	4.013e^-4	0.954	INTRON Sdc
3R	22916149	3R_22916149_SNP [dm3] 3R_27090427_SNP [dm6]	T	C	4.020e^-4	0.954	SYNONYMOUS_CODING Cpr97Eb
2L	16235091	2L_16235091_SNP [dm3] 2L_16235091_SNP [dm6]	G	A	4.024e^-4	0.954	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16921428	2R_16921428_SNP [dm3] 2R_21033923_SNP [dm6]	T	C	4.024e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	402374	2R_402374_SNP [dm3] 2R_4514869_SNP [dm6]	T	C	4.027e^-4	0.954	DOWNSTREAM RpL38 INTERGENIC
3R	13548985	3R_13548985_SNP [dm3] 3R_17723263_SNP [dm6]	T	A	4.029e^-4	0.954	DOWNSTREAM Pxt INTERGENIC
3L	5424382	3L_5424382_SNP [dm3] 3L_5431282_SNP [dm6]	T	G	4.030e^-4	0.954	INTRON CG34391
2R	17357351	2R_17357351_SNP [dm3] 2R_21469846_SNP [dm6]	C	T	4.034e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	10083410	2L_10083410_SNP [dm3] 2L_10083410_SNP [dm6]	G	T	4.039e^-4	0.954	INTRON CG44153
X	3429564	X_3429564_SNP [dm3] X_3535531_SNP [dm6]	A	T	4.047e^-4	0.954	INTRON CG32791	TF binding site mE1_TFBS_inv
X	5552072	X_5552072_SNP [dm3] X_5658039_SNP [dm6]	A	G	4.080e^-4	0.954	INTRON CG42265
3R	25887398	3R_25887398_SNP [dm3] 3R_30061676_SNP [dm6]	C	A	4.086e^-4	0.954	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1726714	2L_1726714_SNP [dm3] 2L_1726714_SNP [dm6]	A	G	4.087e^-4	0.954	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4358152	3R_4358152_INS [dm3] 3R_8532430_INS [dm6]	T	TTTTT	4.089e^-4	0.954	INTERGENIC
2R	3163335	2R_3163335_SNP [dm3] 2R_7275830_SNP [dm6]	C	A	4.090e^-4	0.954	NON_SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2948278	2R_2948278_SNP [dm3] 2R_7060773_SNP [dm6]	C	A	4.096e^-4	0.954	INTRON pgant3
2R	567032	2R_567032_SNP [dm3] 2R_4679527_SNP [dm6]	C	T	4.098e^-4	0.954	INTERGENIC
2R	17361530	2R_17361530_SNP [dm3] 2R_21474025_SNP [dm6]	T	A	4.098e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	3787464	3R_3787464_SNP [dm3] 3R_7961742_SNP [dm6]	G	A	4.104e^-4	0.954	INTRON dsx
3L	7976841	3L_7976841_SNP [dm3] 3L_7983741_SNP [dm6]	G	C	4.109e^-4	0.954	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17738655	2R_17738655_INS [dm3] 2R_21851150_INS [dm6]	A	AAG	4.117e^-4	0.954	INTERGENIC
X	18916350	X_18916350_SNP [dm3] X_19022317_SNP [dm6]	G	T	4.118e^-4	0.954	INTRON CG43759	TF binding site mE1_TFBS_chinmo
2L	9582114	2L_9582114_SNP [dm3] 2L_9582114_SNP [dm6]	C	T	4.121e^-4	0.954	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	2541496	3L_2541496_SNP [dm3] 3L_2541496_SNP [dm6]	G	T	4.123e^-4	0.954	INTRON Spn
2R	16386644	2R_16386644_SNP [dm3] 2R_20499139_SNP [dm6]	A	T	4.126e^-4	0.954	INTERGENIC
3R	26607456	3R_26607456_SNP [dm3] 3R_30781734_SNP [dm6]	A	T	4.148e^-4	0.954	INTRON zfh1 EXON CR45189	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17361575	2R_17361575_SNP [dm3] 2R_21474070_SNP [dm6]	T	C	4.148e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	8421504	2R_8421504_SNP [dm3] 2R_12533999_SNP [dm6]	C	A	4.155e^-4	0.954	INTRON fra	TF binding site BDTNP1_TFBS_dl
3R	16242330	3R_16242330_SNP [dm3] 3R_20416608_SNP [dm6]	A	G	4.161e^-4	0.954	INTRON Gfrl
3L	10341590	3L_10341590_SNP [dm3] 3L_10348490_SNP [dm6]	A	T	4.162e^-4	0.954	INTRON CR44327
3L	15771208	3L_15771208_SNP [dm3] 3L_15778108_SNP [dm6]	C	G	4.164e^-4	0.954	INTERGENIC
2L	17988094	2L_17988094_SNP [dm3] 2L_17988094_SNP [dm6]	G	C	4.183e^-4	0.954	NON_SYNONYMOUS_CODING CG5681
2R	2797266	2R_2797266_SNP [dm3] 2R_6909761_SNP [dm6]	C	A	4.184e^-4	0.954	INTRON CG30158
X	6983655	X_6983655_DEL [dm3] X_7089622_DEL [dm6]	TT	T	4.185e^-4	0.954	INTRON Sxl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	22504927	3R_22504927_SNP [dm3] 3R_26679205_SNP [dm6]	A	C	4.187e^-4	0.954	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
3L	2178156	3L_2178156_SNP [dm3] 3L_2178156_SNP [dm6]	T	G	4.192e^-4	0.954	INTERGENIC
3L	14273433	3L_14273433_SNP [dm3] 3L_14280333_SNP [dm6]	T	A	4.195e^-4	0.954	INTRON fz
2R	19498782	2R_19498782_SNP [dm3] 2R_23611259_SNP [dm6]	A	G	4.197e^-4	0.954	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6045829	2R_6045829_INS [dm3] 2R_10158324_INS [dm6]	T	TT	4.204e^-4	0.954	UTR_5_PRIME mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5602826	3L_5602826_SNP [dm3] 3L_5609726_SNP [dm6]	T	A	4.210e^-4	0.954	INTERGENIC
2R	9332652	2R_9332652_SNP [dm3] 2R_13445147_SNP [dm6]	G	A	4.213e^-4	0.954	DOWNSTREAM CG30062 INTRON cnn
2R	9315743	2R_9315743_SNP [dm3] 2R_13428238_SNP [dm6]	G	A	4.218e^-4	0.954	INTRON CG42321
3R	22141443	3R_22141443_SNP [dm3] 3R_26315721_SNP [dm6]	C	T	4.225e^-4	0.954	INTERGENIC
3R	26816283	3R_26816283_SNP [dm3] 3R_30990561_SNP [dm6]	G	T	4.231e^-4	0.954	UPSTREAM CG31008 INTRON 5-HT7
3R	18403675	3R_18403675_SNP [dm3] 3R_22577953_SNP [dm6]	A	C	4.233e^-4	0.954	INTRON CG33110
2R	2933689	2R_2933689_SNP [dm3] 2R_7046184_SNP [dm6]	C	T	4.234e^-4	0.954	INTRON Tsp42El	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13192156	3L_13192156_SNP [dm3] 3L_13199056_SNP [dm6]	C	G	4.243e^-4	0.954	INTERGENIC
2L	16327990	2L_16327990_SNP [dm3] 2L_16327990_SNP [dm6]	A	G	4.245e^-4	0.954	SYNONYMOUS_CODING CG4278 DOWNSTREAM mRpL4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15851550	2R_15851550_SNP [dm3] 2R_19964045_SNP [dm6]	C	T	4.249e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3163933	2R_3163933_SNP [dm3] 2R_7276428_SNP [dm6]	G	A	4.254e^-4	0.954	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18353707	2L_18353707_SNP [dm3] 2L_18353707_SNP [dm6]	C	T	4.255e^-4	0.954	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25887693	3R_25887693_SNP [dm3] 3R_30061971_SNP [dm6]	G	A	4.256e^-4	0.954	UPSTREAM sima INTRON sima	TF binding site mE1_TFBS_HSA
3R	25887708	3R_25887708_SNP [dm3] 3R_30061986_SNP [dm6]	T	A	4.256e^-4	0.954	UPSTREAM sima INTRON sima	TF binding site mE1_TFBS_HSA
3R	25888027	3R_25888027_SNP [dm3] 3R_30062305_SNP [dm6]	C	T	4.257e^-4	0.954	UPSTREAM sima INTRON sima
2L	9032431	2L_9032431_SNP [dm3] 2L_9032431_SNP [dm6]	C	T	4.258e^-4	0.954	UPSTREAM CG9582 & 1 other INTERGENIC
X	6275818	X_6275818_SNP [dm3] X_6381785_SNP [dm6]	T	C	4.269e^-4	0.954	INTERGENIC
3L	961363	3L_961363_SNP [dm3] 3L_961363_SNP [dm6]	A	C	4.270e^-4	0.954	INTRON Glut1
X	7657812	X_7657812_SNP [dm3] X_7763779_SNP [dm6]	A	C	4.272e^-4	0.954	INTERGENIC
2L	6766973	2L_6766973_SNP [dm3] 2L_6766973_SNP [dm6]	T	A	4.282e^-4	0.954	SYNONYMOUS_CODING CG11321 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad
2R	6508079	2R_6508079_INS [dm3] 2R_10620574_INS [dm6]	G	GGCGGAATTCTGCTCACTTC...	4.287e^-4	0.954	INTRON CG11883
X	8548346	X_8548346_SNP [dm3] X_8654313_SNP [dm6]	A	C	4.289e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	16901163	2L_16901163_SNP [dm3] 2L_16901163_SNP [dm6]	A	T	4.294e^-4	0.954	SYNONYMOUS_CODING CG12288 UPSTREAM CG31805 INTRON tweek
2R	16431842	2R_16431842_SNP [dm3] 2R_20544337_SNP [dm6]	A	C	4.294e^-4	0.954	INTERGENIC
2R	3109106	2R_3109106_SNP [dm3] 2R_7221601_SNP [dm6]	C	G	4.297e^-4	0.954	SYNONYMOUS_CODING pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21913345	3R_21913345_SNP [dm3] 3R_26087623_SNP [dm6]	G	A	4.298e^-4	0.954	INTRON dys
3R	20921871	3R_20921871_SNP [dm3] 3R_25096149_SNP [dm6]	G	A	4.302e^-4	0.954	DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12107854	3L_12107854_SNP [dm3] 3L_12114754_SNP [dm6]	G	A	4.313e^-4	0.954	INTERGENIC
2L	174200	2L_174200_SNP [dm3] 2L_174200_SNP [dm6]	G	A	4.318e^-4	0.954	INTRON spen
2R	6254378	2R_6254378_SNP [dm3] 2R_10366873_SNP [dm6]	A	T	4.319e^-4	0.954	INTRON CG42732
2R	17332991	2R_17332991_SNP [dm3] 2R_21445486_SNP [dm6]	C	G	4.320e^-4	0.954	INTRON Sdc
3L	13200693	3L_13200693_SNP [dm3] 3L_13207593_SNP [dm6]	C	T	4.323e^-4	0.954	DOWNSTREAM CR45096 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14642375	X_14642375_SNP [dm3] X_14748342_SNP [dm6]	C	T	4.335e^-4	0.954	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13670006	2L_13670006_SNP [dm3] 2L_13670006_SNP [dm6]	A	T	4.338e^-4	0.954	DOWNSTREAM CG18507 INTRON CG18507
2R	1355026	2R_1355026_SNP [dm3] 2R_5467521_SNP [dm6]	A	C	4.340e^-4	0.954	DOWNSTREAM CG30440 INTERGENIC
X	14328936	X_14328936_SNP [dm3] X_14434903_SNP [dm6]	G	A	4.341e^-4	0.954	INTRON dpr8
3L	8563840	3L_8563840_SNP [dm3] 3L_8570740_SNP [dm6]	T	A	4.348e^-4	0.954	DOWNSTREAM CR43910 & 1 other INTRON rhea
X	4521557	X_4521557_SNP [dm3] X_4627524_SNP [dm6]	A	G	4.357e^-4	0.954	UTR_3_PRIME CG12184 DOWNSTREAM peb
X	7656873	X_7656873_SNP [dm3] X_7762840_SNP [dm6]	A	G	4.357e^-4	0.954	INTERGENIC
3R	26433459	3R_26433459_SNP [dm3] 3R_30607737_SNP [dm6]	G	T	4.362e^-4	0.954	SYNONYMOUS_CODING CG31016
3L	528497	3L_528497_SNP [dm3] 3L_528497_SNP [dm6]	C	T	4.363e^-4	0.954	NON_SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45118 & 1 other INTRON klar	TF binding site BDTNP1_TFBS_twi
2L	14475072	2L_14475072_SNP [dm3] 2L_14475072_SNP [dm6]	G	T	4.364e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	17905773	2L_17905773_SNP [dm3] 2L_17905773_SNP [dm6]	G	C	4.368e^-4	0.954	INTERGENIC
X	8548433	X_8548433_SNP [dm3] X_8654400_SNP [dm6]	A	T	4.380e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2R	17995482	2R_17995482_SNP [dm3] 2R_22107977_SNP [dm6]	T	A	4.394e^-4	0.954	UTR_3_PRIME Vrp1 INTRON Vrp1
X	8967847	X_8967847_SNP [dm3] X_9073814_SNP [dm6]	A	C	4.400e^-4	0.954	INTRON CG44325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	6116107	2L_6116107_SNP [dm3] 2L_6116107_SNP [dm6]	G	T	4.405e^-4	0.954	INTRON stai
4	110152	4_110152_DEL [dm3] 4_89526_DEL [dm6]	GATTAG	G	4.405e^-4	0.954	UPSTREAM pan INTRON pan	TF binding site mE1_TFBS_bab1
2R	8766325	2R_8766325_SNP [dm3] 2R_12878820_SNP [dm6]	G	T	4.411e^-4	0.954	UTR_5_PRIME Nmda1 UPSTREAM Nmda1 INTRON Aats-asp & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	7114307	X_7114307_SNP [dm3] X_7220274_SNP [dm6]	C	T	4.413e^-4	0.954	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9041014	2L_9041014_SNP [dm3] 2L_9041014_SNP [dm6]	T	G	4.420e^-4	0.954	INTERGENIC
2R	18264553	2R_18264553_SNP [dm3] 2R_22377048_SNP [dm6]	C	T	4.422e^-4	0.954	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	4.430e^-4	0.954	INTERGENIC
X	9988122	X_9988122_DEL [dm3] X_10094089_DEL [dm6]	TT	T	4.435e^-4	0.954	INTRON RhoU
2L	14475190	2L_14475190_SNP [dm3] 2L_14475190_SNP [dm6]	A	G	4.439e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	10665137	3R_10665137_SNP [dm3] 3R_14839415_SNP [dm6]	A	G	4.445e^-4	0.954	INTRON btsz
3L	2034750	3L_2034750_INS [dm3] 3L_2034750_INS [dm6]	T	TT	4.453e^-4	0.954	INTERGENIC
2L	7020509	2L_7020509_SNP [dm3] 2L_7020509_SNP [dm6]	G	A	4.454e^-4	0.954	INTRON ade3
2L	4893069	2L_4893069_SNP [dm3] 2L_4893069_SNP [dm6]	A	G	4.454e^-4	0.954	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	19954309	3R_19954309_SNP [dm3] 3R_24128587_SNP [dm6]	A	T	4.456e^-4	0.954	NON_SYNONYMOUS_CODING CG5463 DOWNSTREAM Rootletin
3R	26494479	3R_26494479_SNP [dm3] 3R_30668757_SNP [dm6]	A	G	4.456e^-4	0.954	INTERGENIC
2R	17344397	2R_17344397_SNP [dm3] 2R_21456892_SNP [dm6]	C	G	4.459e^-4	0.954	INTRON Sdc
X	4574134	X_4574134_SNP [dm3] X_4680101_SNP [dm6]	A	G	4.460e^-4	0.954	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	9322052	2R_9322052_SNP [dm3] 2R_13434547_SNP [dm6]	A	G	4.479e^-4	0.954	SYNONYMOUS_CODING Ser8 DOWNSTREAM CG30065 INTRON CG42321
2R	18205492	2R_18205492_INS [dm3] 2R_22317987_INS [dm6]	G	GGCATCGG	4.485e^-4	0.954	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10721237	2R_10721237_SNP [dm3] 2R_14833732_SNP [dm6]	G	A	4.490e^-4	0.954	SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2R	12033328	2R_12033328_SNP [dm3] 2R_16145823_SNP [dm6]	T	C	4.498e^-4	0.954	UTR_3_PRIME Aats-cys DOWNSTREAM Ext2
X	19170493	X_19170493_SNP [dm3] X_19276460_SNP [dm6]	C	T	4.509e^-4	0.954	UTR_5_PRIME CG32537 DOWNSTREAM CG8028 INTRON CG32536
3R	22469164	3R_22469164_INS [dm3] 3R_26643442_INS [dm6]	A	ACA	4.510e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cnc
X	6395403	X_6395403_SNP [dm3] X_6501370_SNP [dm6]	A	C	4.515e^-4	0.954	INTRON CG42340
3R	26527139	3R_26527139_SNP [dm3] 3R_30701417_SNP [dm6]	A	T	4.522e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	3164101	2R_3164101_SNP [dm3] 2R_7276596_SNP [dm6]	G	A	4.529e^-4	0.954	SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	4.532e^-4	0.954	INTERGENIC
X	4583699	X_4583699_DEL [dm3] X_4689666_DEL [dm6]	TC	T	4.535e^-4	0.954	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9977882	X_9977882_SNP [dm3] X_10083849_SNP [dm6]	C	T	4.547e^-4	0.954	SYNONYMOUS_CODING CG2972	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10928767	X_10928767_SNP [dm3] X_11034734_SNP [dm6]	C	T	4.552e^-4	0.954	INTRON CG42339
2L	20508455	2L_20508455_DEL [dm3] 2L_20508455_DEL [dm6]	AA	A	4.561e^-4	0.954	INTERGENIC
2R	5383562	2R_5383562_SNP [dm3] 2R_9496057_SNP [dm6]	T	A	4.564e^-4	0.954	INTRON Wnt2
3R	21913162	3R_21913162_SNP [dm3] 3R_26087440_SNP [dm6]	C	T	4.567e^-4	0.954	INTRON dys
3R	22072364	3R_22072364_SNP [dm3] 3R_26246642_SNP [dm6]	G	T	4.569e^-4	0.954	INTRON CR42745
3L	13373165	3L_13373165_SNP [dm3] 3L_13380065_SNP [dm6]	C	T	4.571e^-4	0.954	SYNONYMOUS_CODING CG14111 DOWNSTREAM SNCF & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16641863	2R_16641863_SNP [dm3] 2R_20754358_SNP [dm6]	G	A	4.587e^-4	0.954	DOWNSTREAM CG34202 INTERGENIC
2R	6061049	2R_6061049_SNP [dm3] 2R_10173544_SNP [dm6]	T	G	4.594e^-4	0.954	INTRON KCNQ
2R	17188297	2R_17188297_SNP [dm3] 2R_21300792_SNP [dm6]	T	A	4.595e^-4	0.954	INTRON CG42672
2R	15834034	2R_15834034_SNP [dm3] 2R_19946529_SNP [dm6]	G	A	4.603e^-4	0.954	SPLICE_SITE_REGION CG42691 UPSTREAM CG42690 & 1 other INTRON CG42691	TF binding site BDTNP1_TFBS_dl
3R	25887699	3R_25887699_SNP [dm3] 3R_30061977_SNP [dm6]	A	G	4.611e^-4	0.954	UPSTREAM sima INTRON sima	TF binding site mE1_TFBS_HSA
3L	3810995	3L_3810995_SNP [dm3] 3L_3810995_SNP [dm6]	G	T	4.613e^-4	0.954	UTR_5_PRIME CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	17722022	2R_17722022_SNP [dm3] 2R_21834517_SNP [dm6]	G	T	4.618e^-4	0.954	NON_SYNONYMOUS_CODING CG4363 UPSTREAM CG34040 DOWNSTREAM CG4377
3L	13226332	3L_13226332_SNP [dm3] 3L_13233232_SNP [dm6]	C	A	4.621e^-4	0.954	INTRON caps
X	7004781	X_7004781_SNP [dm3] X_7110748_SNP [dm6]	C	A	4.628e^-4	0.954	UPSTREAM fz4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8548416	X_8548416_SNP [dm3] X_8654383_SNP [dm6]	C	T	4.629e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	7362869	2L_7362869_SNP [dm3] 2L_7362869_SNP [dm6]	C	A	4.637e^-4	0.954	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8005173	3L_8005173_SNP [dm3] 3L_8012073_SNP [dm6]	C	A	4.638e^-4	0.954	INTRON nmo
2L	16965953	2L_16965953_SNP [dm3] 2L_16965953_SNP [dm6]	T	A	4.639e^-4	0.954	DOWNSTREAM CR45285 INTERGENIC
3L	12557138	3L_12557138_DEL [dm3] 3L_12564038_DEL [dm6]	AATAATATGATAATTGAAAA...	A	4.640e^-4	0.954	INTRON sowah
X	11308503	X_11308503_SNP [dm3] X_11414470_SNP [dm6]	G	A	4.643e^-4	0.954	INTRON Gr10a	TF binding site BDTNP1_TFBS_da
2R	15237478	2R_15237478_SNP [dm3] 2R_19349973_SNP [dm6]	G	A	4.648e^-4	0.954	INTRON Rgk1
3L	15208031	3L_15208031_SNP [dm3] 3L_15214931_SNP [dm6]	T	C	4.658e^-4	0.954	INTERGENIC
3R	22439207	3R_22439207_SNP [dm3] 3R_26613485_SNP [dm6]	T	C	4.662e^-4	0.954	INTERGENIC
X	8548393	X_8548393_SNP [dm3] X_8654360_SNP [dm6]	T	C	4.662e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2R	3093581	2R_3093581_SNP [dm3] 2R_7206076_SNP [dm6]	G	A	4.677e^-4	0.954	INTRON pk
2L	17933005	2L_17933005_SNP [dm3] 2L_17933005_SNP [dm6]	A	G	4.684e^-4	0.954	INTERGENIC
3R	22979522	3R_22979522_SNP [dm3] 3R_27153800_SNP [dm6]	C	T	4.691e^-4	0.954	INTRON Men-b
3R	21230222	3R_21230222_SNP [dm3] 3R_25404500_SNP [dm6]	T	G	4.693e^-4	0.954	INTRON Fur1
3R	10661754	3R_10661754_SNP [dm3] 3R_14836032_SNP [dm6]	C	A	4.697e^-4	0.954	INTRON btsz
2L	13984837	2L_13984837_SNP [dm3] 2L_13984837_SNP [dm6]	A	G	4.700e^-4	0.954	SYNONYMOUS_CODING rk
3L	9535281	3L_9535281_SNP [dm3] 3L_9542181_SNP [dm6]	A	T	4.705e^-4	0.954	DOWNSTREAM Ir67a INTERGENIC
2L	6122558	2L_6122558_DEL [dm3] 2L_6122558_DEL [dm6]	AAATTGA	A	4.706e^-4	0.954	INTRON stai
X	3436844	X_3436844_SNP [dm3] X_3542811_SNP [dm6]	G	T	4.706e^-4	0.954	INTRON CG32791
3R	10210516	3R_10210516_INS [dm3] 3R_14384794_INS [dm6]	G	GG	4.711e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_inv
X	6467909	X_6467909_SNP [dm3] X_6573876_SNP [dm6]	T	C	4.721e^-4	0.954	INTRON CG34417
2R	16910394	2R_16910394_SNP [dm3] 2R_21022889_SNP [dm6]	T	C	4.722e^-4	0.954	INTRON RIC-3
2L	11169471	2L_11169471_INS [dm3] 2L_11169471_INS [dm6]	GAACG	ATTATATA	4.724e^-4	0.954	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
3R	23214981	3R_23214981_SNP [dm3] 3R_27389259_SNP [dm6]	G	C	4.726e^-4	0.954	INTRON side	TF binding site mE1_TFBS_chinmo
X	8548252	X_8548252_SNP [dm3] X_8654219_SNP [dm6]	C	A	4.726e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
3L	18887495	3L_18887495_SNP [dm3] 3L_18894395_SNP [dm6]	C	G	4.738e^-4	0.954	SYNONYMOUS_CODING CG3902	TF binding site mE1_TFBS_cad
2L	17976956	2L_17976956_SNP [dm3] 2L_17976956_SNP [dm6]	A	T	4.744e^-4	0.954	SYNONYMOUS_CODING btv
2R	988428	2R_988428_SNP [dm3] 2R_5100923_SNP [dm6]	G	A	4.746e^-4	0.954	INTERGENIC	transposable element FlyBase
3R	22587673	3R_22587673_DEL [dm3] 3R_26761951_DEL [dm6]	GGGCGTGGCAG...	G	4.748e^-4	0.954	INTERGENIC
3R	16240759	3R_16240759_SNP [dm3] 3R_20415037_SNP [dm6]	G	T	4.749e^-4	0.954	INTRON Gfrl
2R	2797265	2R_2797265_SNP [dm3] 2R_6909760_SNP [dm6]	A	T	4.755e^-4	0.954	INTRON CG30158
3R	4358141	3R_4358141_INS [dm3] 3R_8532419_INS [dm6]	A	ATGCATA	4.756e^-4	0.954	INTERGENIC
2L	14541278	2L_14541278_SNP [dm3] 2L_14541278_SNP [dm6]	T	A	4.759e^-4	0.954	INTERGENIC
3R	20331244	3R_20331244_SNP [dm3] 3R_24505522_SNP [dm6]	G	C	4.771e^-4	0.954	INTERGENIC
2L	6935241	2L_6935241_SNP [dm3] 2L_6935241_SNP [dm6]	G	A	4.775e^-4	0.954	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
3L	10453495	3L_10453495_SNP [dm3] 3L_10460395_SNP [dm6]	C	T	4.777e^-4	0.954	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22617459	3R_22617459_SNP [dm3] 3R_26791737_SNP [dm6]	A	C	4.793e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20762861	2L_20762861_DEL [dm3] 2L_20762861_DEL [dm6]	AA	A	4.795e^-4	0.954	DOWNSTREAM dia INTRON dia	TF binding site mE1_TFBS_HSA
2L	8533538	2L_8533538_SNP [dm3] 2L_8533538_SNP [dm6]	A	C	4.798e^-4	0.954	INTRON CG17834	TF binding site mE1_TFBS_cad
3L	3491918	3L_3491918_SNP [dm3] 3L_3491918_SNP [dm6]	G	A	4.800e^-4	0.954	INTRON CG42324
2R	9321482	2R_9321482_SNP [dm3] 2R_13433977_SNP [dm6]	C	A	4.801e^-4	0.954	UPSTREAM Ser8 DOWNSTREAM CG30065 INTRON CG42321
2R	15237494	2R_15237494_SNP [dm3] 2R_19349989_SNP [dm6]	G	A	4.801e^-4	0.954	INTRON Rgk1
2L	11195281	2L_11195281_SNP [dm3] 2L_11195281_SNP [dm6]	T	G	4.802e^-4	0.954	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
2L	11168466	2L_11168466_SNP [dm3] 2L_11168466_SNP [dm6]	C	T	4.805e^-4	0.954	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23005088	3R_23005088_SNP [dm3] 3R_27179366_SNP [dm6]	G	A	4.806e^-4	0.954	SPLICE_SITE_REGION Ser INTRON Ser
X	22067064	X_22067064_SNP [dm3] X_22665228_SNP [dm6]	T	A	4.824e^-4	0.954	INTRON CR44997
3R	23998266	3R_23998266_SNP [dm3] 3R_28172544_SNP [dm6]	A	C	4.825e^-4	0.954	INTRON CG34354
2L	4855701	2L_4855701_SNP [dm3] 2L_4855701_SNP [dm6]	T	C	4.825e^-4	0.954	INTRON pog
2R	16910396	2R_16910396_SNP [dm3] 2R_21022891_SNP [dm6]	C	T	4.828e^-4	0.954	INTRON RIC-3
X	14328955	X_14328955_SNP [dm3] X_14434922_SNP [dm6]	C	T	4.833e^-4	0.954	INTRON dpr8
2L	16340047	2L_16340047_SNP [dm3] 2L_16340047_SNP [dm6]	G	A	4.833e^-4	0.954	SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
2L	9382881	2L_9382881_INS [dm3] 2L_9382881_INS [dm6]	C	CGC	4.836e^-4	0.954	INTRON Shawl
3R	13089862	3R_13089862_SNP [dm3] 3R_17264140_SNP [dm6]	G	A	4.838e^-4	0.954	INTRON beat-IIb
2R	602464	2R_602464_DEL [dm3] 2R_4714959_DEL [dm6]	TA	T	4.843e^-4	0.954	INTRON Nipped-B	transposable element FlyBase
2R	17175181	2R_17175181_SNP [dm3] 2R_21287676_SNP [dm6]	C	T	4.844e^-4	0.954	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17341562	2R_17341562_SNP [dm3] 2R_21454057_SNP [dm6]	G	T	4.860e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	5127622	3L_5127622_SNP [dm3] 3L_5134522_SNP [dm6]	A	G	4.865e^-4	0.954	SYNONYMOUS_CODING CG4603	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7816407	2R_7816407_SNP [dm3] 2R_11928902_SNP [dm6]	C	A	4.868e^-4	0.954	DOWNSTREAM CR44312 INTERGENIC
3L	8565630	3L_8565630_SNP [dm3] 3L_8572530_SNP [dm6]	A	G	4.872e^-4	0.954	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea DOWNSTREAM mir-190	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9232822	X_9232822_SNP [dm3] X_9338789_SNP [dm6]	A	T	4.873e^-4	0.954	INTRON CG34449	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	9205262	2L_9205262_INS [dm3] 2L_9205262_INS [dm6]	A	AA	4.873e^-4	0.954	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5888148	3R_5888148_SNP [dm3] 3R_10062426_SNP [dm6]	C	T	4.877e^-4	0.954	UPSTREAM CG33630 & 1 other DOWNSTREAM CR33629 INTERGENIC
3R	9863633	3R_9863633_SNP [dm3] 3R_14037911_SNP [dm6]	A	T	4.878e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13747843	3R_13747843_SNP [dm3] 3R_17922121_SNP [dm6]	T	G	4.882e^-4	0.954	INTRON cpo
3R	22163368	3R_22163368_SNP [dm3] 3R_26337646_SNP [dm6]	C	A	4.886e^-4	0.954	INTRON CG33970
3R	26022565	3R_26022565_SNP [dm3] 3R_30196843_SNP [dm6]	T	G	4.886e^-4	0.954	UPSTREAM CG15531 INTRON CG9743	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7359870	2L_7359870_SNP [dm3] 2L_7359870_SNP [dm6]	T	C	4.887e^-4	0.954	INTERGENIC
3L	3558516	3L_3558516_INS [dm3] 3L_3558516_INS [dm6]	C	CTTC	4.887e^-4	0.954	INTRON Eip63E
2L	7363447	2L_7363447_SNP [dm3] 2L_7363447_SNP [dm6]	G	A	4.893e^-4	0.954	UTR_5_PRIME Wnt10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12164338	3L_12164338_SNP [dm3] 3L_12171238_SNP [dm6]	G	T	4.903e^-4	0.954	INTRON Rh7
3L	8555115	3L_8555115_SNP [dm3] 3L_8562015_SNP [dm6]	T	C	4.905e^-4	0.954	SYNONYMOUS_CODING rhea	TF binding site mE1_TFBS_HSA
X	7114211	X_7114211_SNP [dm3] X_7220178_SNP [dm6]	C	T	4.929e^-4	0.954	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
X	7114214	X_7114214_SNP [dm3] X_7220181_SNP [dm6]	C	T	4.929e^-4	0.954	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
X	4095521	X_4095521_SNP [dm3] X_4201488_SNP [dm6]	T	A	4.936e^-4	0.954	INTRON Fas2	TF binding site mE1_TFBS_sens
3R	19907089	3R_19907089_SNP [dm3] 3R_24081367_SNP [dm6]	C	T	4.940e^-4	0.954	INTRON 4EHP
3L	15762907	3L_15762907_SNP [dm3] 3L_15769807_SNP [dm6]	C	T	4.943e^-4	0.954	INTERGENIC
X	8548394	X_8548394_SNP [dm3] X_8654361_SNP [dm6]	A	T	4.949e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
3L	10456208	3L_10456208_SNP [dm3] 3L_10463108_SNP [dm6]	C	T	4.953e^-4	0.954	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	17870755	2R_17870755_SNP [dm3] 2R_21983250_SNP [dm6]	A	T	4.956e^-4	0.954	INTERGENIC
2R	16416373	2R_16416373_SNP [dm3] 2R_20528868_SNP [dm6]	T	C	4.957e^-4	0.954	SYNONYMOUS_CODING CG30151
3L	15632141	3L_15632141_SNP [dm3] 3L_15639041_SNP [dm6]	A	T	4.960e^-4	0.954	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10504618	2R_10504618_SNP [dm3] 2R_14617113_SNP [dm6]	A	G	4.966e^-4	0.954	SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_sens
2L	7362933	2L_7362933_SNP [dm3] 2L_7362933_SNP [dm6]	T	C	4.969e^-4	0.954	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26431452	3R_26431452_SNP [dm3] 3R_30605730_SNP [dm6]	T	G	4.980e^-4	0.954	SYNONYMOUS_CODING PH4alphaNE3 UPSTREAM CG31016
X	13086590	X_13086590_SNP [dm3] X_13192557_SNP [dm6]	T	G	4.981e^-4	0.954	UPSTREAM CG12723 DOWNSTREAM CG2453 INTERGENIC
2R	18404889	2R_18404889_SNP [dm3] 2R_22517384_SNP [dm6]	C	T	4.987e^-4	0.954	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6883343	3R_6883343_SNP [dm3] 3R_11057621_SNP [dm6]	A	G	4.990e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14256211	X_14256211_DEL [dm3] X_14362178_DEL [dm6]	ATCTATATA	A	4.996e^-4	0.954	INTRON dpr8
3R	22439206	3R_22439206_SNP [dm3] 3R_26613484_SNP [dm6]	A	T	4.998e^-4	0.954	INTERGENIC
3R	19876941	3R_19876941_SNP [dm3] 3R_24051219_SNP [dm6]	A	G	5.000e^-4	0.954	UPSTREAM CG5991 & 1 other INTRON CG5991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7336136	3R_7336136_SNP [dm3] 3R_11510414_SNP [dm6]	G	C	5.001e^-4	0.954	INTERGENIC
3L	11151265	3L_11151265_SNP [dm3] 3L_11158165_SNP [dm6]	T	C	5.003e^-4	0.954	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6467833	X_6467833_SNP [dm3] X_6573800_SNP [dm6]	A	G	5.006e^-4	0.954	INTRON CG34417
2L	1029649	2L_1029649_SNP [dm3] 2L_1029649_SNP [dm6]	T	A	5.012e^-4	0.954	INTRON IA-2
3R	20534128	3R_20534128_SNP [dm3] 3R_24708406_SNP [dm6]	C	T	5.012e^-4	0.954	UTR_3_PRIME slo DOWNSTREAM slo
2R	16416334	2R_16416334_SNP [dm3] 2R_20528829_SNP [dm6]	T	A	5.016e^-4	0.954	SYNONYMOUS_CODING CG30151
2L	14678168	2L_14678168_SNP [dm3] 2L_14678168_SNP [dm6]	A	G	5.030e^-4	0.954	INTRON osp
X	8778387	X_8778387_SNP [dm3] X_8884354_SNP [dm6]	T	C	5.030e^-4	0.954	INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11452571	3L_11452571_SNP [dm3] 3L_11459471_SNP [dm6]	G	A	5.036e^-4	0.954	SYNONYMOUS_CODING CG7551	TF binding site mE1_TFBS_inv
3R	26278946	3R_26278946_SNP [dm3] 3R_30453224_SNP [dm6]	C	G	5.042e^-4	0.954	INTRON aralar1
X	11308495	X_11308495_SNP [dm3] X_11414462_SNP [dm6]	T	A	5.054e^-4	0.954	INTRON Gr10a	TF binding site BDTNP1_TFBS_da
3L	4861847	3L_4861847_SNP [dm3] 3L_4861847_SNP [dm6]	T	C	5.062e^-4	0.954	SYNONYMOUS_CODING CG17150
2R	14720973	2R_14720973_SNP [dm3] 2R_18833468_SNP [dm6]	A	T	5.068e^-4	0.954	UTR_3_PRIME CG15098 DOWNSTREAM CG15082
2R	2962438	2R_2962438_SNP [dm3] 2R_7074933_SNP [dm6]	C	A	5.070e^-4	0.954	UPSTREAM CG12831 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17346210	2R_17346210_SNP [dm3] 2R_21458705_SNP [dm6]	A	G	5.073e^-4	0.954	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13373213	3L_13373213_SNP [dm3] 3L_13380113_SNP [dm6]	G	A	5.081e^-4	0.954	SYNONYMOUS_CODING CG14111 DOWNSTREAM SNCF & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11246149	3L_11246149_SNP [dm3] 3L_11253049_SNP [dm6]	C	A	5.104e^-4	0.954	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	9988114	X_9988114_SNP [dm3] X_10094081_SNP [dm6]	C	A	5.106e^-4	0.954	INTRON RhoU
3L	987657	3L_987657_SNP [dm3] 3L_987657_SNP [dm6]	C	T	5.108e^-4	0.954	INTRON Glut1
2L	10061983	2L_10061983_SNP [dm3] 2L_10061983_SNP [dm6]	T	C	5.121e^-4	0.954	INTRON Spn31A
3L	8765991	3L_8765991_SNP [dm3] 3L_8772891_SNP [dm6]	C	T	5.122e^-4	0.954	INTRON Fhos
X	3205237	X_3205237_SNP [dm3] X_3311204_SNP [dm6]	A	G	5.126e^-4	0.954	INTRON dnc
3R	12035865	3R_12035865_SNP [dm3] 3R_16210143_SNP [dm6]	T	A	5.130e^-4	0.954	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
2R	17932911	2R_17932911_SNP [dm3] 2R_22045406_SNP [dm6]	A	G	5.136e^-4	0.954	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.682e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0165

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.5453	0.0597

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1723 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	17572489	3L_17572489_SNP [dm3] 3L_17579389_SNP [dm6]	G	A	5.589e^-7	1	INTRON Eip74EF
3L	2587721	3L_2587721_SNP [dm3] 3L_2587721_SNP [dm6]	G	T	2.333e^-6	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	2587731	3L_2587731_SNP [dm3] 3L_2587731_SNP [dm6]	C	A	2.828e^-6	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	18230498	X_18230498_SNP [dm3] X_18336465_SNP [dm6]	G	A	4.432e^-6	1	INTRON CG6123
3L	17572491	3L_17572491_SNP [dm3] 3L_17579391_SNP [dm6]	A	G	5.267e^-6	1	INTRON Eip74EF
2R	20210093	2R_20210093_SNP [dm3] 2R_24322570_SNP [dm6]	A	T	5.322e^-6	1	INTERGENIC
3L	12858005	3L_12858005_SNP [dm3] 3L_12864905_SNP [dm6]	A	G	5.897e^-6	1	INTERGENIC
2R	20210067	2R_20210067_INS [dm3] 2R_24322544_INS [dm6]	T	TGAGT	6.138e^-6	1	INTERGENIC
X	5033505	X_5033505_SNP [dm3] X_5139472_SNP [dm6]	A	G	7.411e^-6	1	INTRON rg & 1 other
2L	4370469	2L_4370469_SNP [dm3] 2L_4370469_SNP [dm6]	T	A	8.238e^-6	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4370480	2L_4370480_SNP [dm3] 2L_4370480_SNP [dm6]	A	T	8.894e^-6	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15932954	3L_15932954_DEL [dm3] 3L_15939854_DEL [dm6]	AA	A	9.707e^-6	1	INTRON Pka-C3
3L	17565674	3L_17565674_SNP [dm3] 3L_17572574_SNP [dm6]	A	G	1.001e^-5	1	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8718951	3R_8718951_SNP [dm3] 3R_12893229_SNP [dm6]	A	T	1.126e^-5	1	UPSTREAM CR44235 DOWNSTREAM CR33929 & 1 other INTERGENIC
3R	3260702	3R_3260702_SNP [dm3] 3R_7434980_SNP [dm6]	T	G	1.226e^-5	1	INTERGENIC
2R	20210916	2R_20210916_SNP [dm3] 2R_24323393_SNP [dm6]	G	T	1.276e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20211883	2R_20211883_SNP [dm3] 2R_24324360_SNP [dm6]	A	G	1.276e^-5	1	UPSTREAM CR44810 INTERGENIC
2R	20210915	2R_20210915_SNP [dm3] 2R_24323392_SNP [dm6]	G	T	1.357e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5929862	3L_5929862_SNP [dm3] 3L_5936762_SNP [dm6]	A	T	1.442e^-5	1	INTRON CG33993
2R	12350872	2R_12350872_INS [dm3] 2R_16463367_INS [dm6]	A	ACA	1.464e^-5	1	INTERGENIC
3L	16949758	3L_16949758_SNP [dm3] 3L_16956658_SNP [dm6]	A	T	1.490e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15075317	2L_15075317_SNP [dm3] 2L_15075317_SNP [dm6]	A	G	1.525e^-5	1	UTR_5_PRIME CG15270 DOWNSTREAM vas INTRON CG15270
2L	4790845	2L_4790845_SNP [dm3] 2L_4790845_SNP [dm6]	C	A	1.563e^-5	1	INTRON CG15630
2L	4014567	2L_4014567_SNP [dm3] 2L_4014567_SNP [dm6]	G	T	1.814e^-5	1	INTERGENIC
2L	4370397	2L_4370397_SNP [dm3] 2L_4370397_SNP [dm6]	C	T	1.836e^-5	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14253153	X_14253153_SNP [dm3] X_14359120_SNP [dm6]	C	T	1.869e^-5	1	INTRON dpr8
2L	12288791	2L_12288791_SNP [dm3] 2L_12288791_SNP [dm6]	C	T	1.870e^-5	1	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4787929	3L_4787929_SNP [dm3] 3L_4787929_SNP [dm6]	G	A	1.915e^-5	1	INTRON RhoGEF64C
3L	17560865	3L_17560865_SNP [dm3] 3L_17567765_SNP [dm6]	T	G	1.931e^-5	1	INTRON Eip74EF
3L	17561048	3L_17561048_SNP [dm3] 3L_17567948_SNP [dm6]	A	G	1.931e^-5	1	INTRON Eip74EF
3R	25918529	3R_25918529_SNP [dm3] 3R_30092807_SNP [dm6]	T	A	2.058e^-5	1	INTRON sima
X	9384325	X_9384325_SNP [dm3] X_9490292_SNP [dm6]	G	A	2.080e^-5	1	INTRON mgl
3R	10264592	3R_10264592_SNP [dm3] 3R_14438870_SNP [dm6]	G	C	2.102e^-5	1	INTRON cv-c
3L	3042258	3L_3042258_SNP [dm3] 3L_3042258_SNP [dm6]	C	T	2.173e^-5	1	UPSTREAM Jafrac2 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	10136834	2L_10136834_SNP [dm3] 2L_10136834_SNP [dm6]	A	G	2.189e^-5	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad
3L	15932981	3L_15932981_SNP [dm3] 3L_15939881_SNP [dm6]	C	T	2.339e^-5	1	INTRON Pka-C3
2R	16119990	2R_16119990_SNP [dm3] 2R_20232485_SNP [dm6]	C	A	2.344e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
2L	15071588	2L_15071588_SNP [dm3] 2L_15071588_SNP [dm6]	G	A	2.417e^-5	1	NON_SYNONYMOUS_CODING vas INTRON vas
2L	3286071	2L_3286071_SNP [dm3] 2L_3286071_SNP [dm6]	G	T	2.445e^-5	1	INTERGENIC
2L	15078649	2L_15078649_SNP [dm3] 2L_15078649_SNP [dm6]	C	T	2.528e^-5	1	INTRON CG15270	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17194837	3L_17194837_SNP [dm3] 3L_17201737_SNP [dm6]	T	C	2.529e^-5	1	INTRON Rbp6
3R	25135918	3R_25135918_SNP [dm3] 3R_29310196_SNP [dm6]	T	C	2.532e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	3042624	3L_3042624_SNP [dm3] 3L_3042624_SNP [dm6]	C	T	2.576e^-5	1	UTR_5_PRIME Jafrac2 UPSTREAM Jafrac2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4387017	3L_4387017_SNP [dm3] 3L_4387017_SNP [dm6]	G	A	2.625e^-5	1	INTRON slow
3R	15179279	3R_15179279_SNP [dm3] 3R_19353557_SNP [dm6]	C	T	2.652e^-5	1	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	1225312	X_1225312_SNP [dm3] X_1331279_SNP [dm6]	T	C	2.677e^-5	1	SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
X	6355190	X_6355190_SNP [dm3] X_6461157_SNP [dm6]	A	T	2.679e^-5	1	INTRON CG42340
X	18231327	X_18231327_SNP [dm3] X_18337294_SNP [dm6]	G	A	2.713e^-5	1	INTRON CG6123
3L	1071517	3L_1071517_SNP [dm3] 3L_1071517_SNP [dm6]	A	T	2.721e^-5	1	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	14768754	X_14768754_SNP [dm3] X_14874721_SNP [dm6]	C	T	2.967e^-5	1	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	12317100	2L_12317100_DEL [dm3] 2L_12317100_DEL [dm6]	GGGATACT	A	3.001e^-5	1	UPSTREAM CR45282 & 1 other EXON CR45283
2L	15066697	2L_15066697_SNP [dm3] 2L_15066697_SNP [dm6]	T	C	3.098e^-5	1	INTRON vas & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18880859	3R_18880859_SNP [dm3] 3R_23055137_SNP [dm6]	A	G	3.262e^-5	1	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_twi
3L	11047405	3L_11047405_SNP [dm3] 3L_11054305_SNP [dm6]	C	A	3.300e^-5	1	UTR_5_PRIME CG7888
2L	3286187	2L_3286187_DEL [dm3] 2L_3286187_DEL [dm6]	GGC	G	3.364e^-5	1	INTERGENIC
2L	3286622	2L_3286622_SNP [dm3] 2L_3286622_SNP [dm6]	C	T	3.367e^-5	1	INTERGENIC
2L	3286098	2L_3286098_SNP [dm3] 2L_3286098_SNP [dm6]	A	T	3.375e^-5	1	INTERGENIC
3L	17499101	3L_17499101_SNP [dm3] 3L_17506001_SNP [dm6]	C	A	3.470e^-5	1	INTRON Oatp74D
3L	9421972	3L_9421972_SNP [dm3] 3L_9428872_SNP [dm6]	T	A	3.541e^-5	1	UTR_3_PRIME RpS17 DOWNSTREAM snoRNA:Psi28S-612 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	9976654	2R_9976654_SNP [dm3] 2R_14089149_SNP [dm6]	A	G	3.551e^-5	1	INTRON Prosap
2R	18331619	2R_18331619_SNP [dm3] 2R_22444114_SNP [dm6]	A	G	3.565e^-5	1	INTERGENIC
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	3.582e^-5	1	INTRON CG33970
3L	2587646	3L_2587646_SNP [dm3] 3L_2587646_SNP [dm6]	C	A	3.616e^-5	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	25271787	3R_25271787_SNP [dm3] 3R_29446065_SNP [dm6]	C	T	3.645e^-5	1	INTRON Ptp99A
X	18136349	X_18136349_INS [dm3] X_18242316_INS [dm6]	G	GG	3.775e^-5	1	INTRON upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14768755	X_14768755_SNP [dm3] X_14874722_SNP [dm6]	G	A	3.903e^-5	1	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	2819880	2R_2819880_SNP [dm3] 2R_6932375_SNP [dm6]	C	T	3.918e^-5	1	SYNONYMOUS_CODING mim INTRON mim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13678723	3R_13678723_INS [dm3] 3R_17853001_INS [dm6]	A	AATATATA	4.028e^-5	1	INTRON tinc
3R	25246383	3R_25246383_SNP [dm3] 3R_29420661_SNP [dm6]	T	A	4.049e^-5	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25135923	3R_25135923_SNP [dm3] 3R_29310201_SNP [dm6]	G	T	4.105e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	2587645	3L_2587645_SNP [dm3] 3L_2587645_SNP [dm6]	T	C	4.141e^-5	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
X	18136382	X_18136382_SNP [dm3] X_18242349_SNP [dm6]	C	G	4.153e^-5	1	INTRON upd2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	1217514	X_1217514_SNP [dm3] X_1323481_SNP [dm6]	A	T	4.218e^-5	1	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
2R	16119987	2R_16119987_SNP [dm3] 2R_20232482_SNP [dm6]	A	C	4.230e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
2R	12350796	2R_12350796_SNP [dm3] 2R_16463291_SNP [dm6]	T	A	4.243e^-5	1	INTERGENIC
2R	12350792	2R_12350792_SNP [dm3] 2R_16463287_SNP [dm6]	G	C	4.312e^-5	1	INTERGENIC
X	1228561	X_1228561_SNP [dm3] X_1334528_SNP [dm6]	T	G	4.471e^-5	1	INTRON CG11409
2L	4790881	2L_4790881_SNP [dm3] 2L_4790881_SNP [dm6]	A	T	4.493e^-5	1	INTRON CG15630
X	9651693	X_9651693_INS [dm3] X_9757660_INS [dm6]	A	AAA	4.569e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7027993	2R_7027993_SNP [dm3] 2R_11140488_SNP [dm6]	G	A	4.601e^-5	1	INTRON CG13229
3R	25919178	3R_25919178_SNP [dm3] 3R_30093456_SNP [dm6]	A	G	4.707e^-5	1	INTRON sima
3R	14720143	3R_14720143_SNP [dm3] 3R_18894421_SNP [dm6]	T	A	4.715e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	951353	3L_951353_SNP [dm3] 3L_951353_SNP [dm6]	G	A	4.790e^-5	1	INTRON Glut1
3L	16949712	3L_16949712_SNP [dm3] 3L_16956612_SNP [dm6]	C	A	4.968e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16119785	2R_16119785_SNP [dm3] 2R_20232280_SNP [dm6]	C	G	4.978e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
3L	16949701	3L_16949701_SNP [dm3] 3L_16956601_SNP [dm6]	T	C	5.125e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1797568	3L_1797568_SNP [dm3] 3L_1797568_SNP [dm6]	C	T	5.273e^-5	1	SYNONYMOUS_CODING CG12020 DOWNSTREAM Cdc37	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25918087	3R_25918087_SNP [dm3] 3R_30092365_SNP [dm6]	A	G	5.274e^-5	1	INTRON sima
3L	13292549	3L_13292549_SNP [dm3] 3L_13299449_SNP [dm6]	A	G	5.275e^-5	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	14128129	2R_14128129_SNP [dm3] 2R_18240624_SNP [dm6]	T	G	5.363e^-5	1	INTERGENIC
3R	12969360	3R_12969360_SNP [dm3] 3R_17143638_SNP [dm6]	C	A	5.444e^-5	1	DOWNSTREAM m-cup INTERGENIC
X	18126948	X_18126948_SNP [dm3] X_18232915_SNP [dm6]	G	A	5.460e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25917303	3R_25917303_SNP [dm3] 3R_30091581_SNP [dm6]	G	C	5.469e^-5	1	INTRON sima
2R	16119667	2R_16119667_SNP [dm3] 2R_20232162_SNP [dm6]	G	C	5.677e^-5	1	UTR_5_PRIME CG11044 UPSTREAM tRNA:G3:56EFb
2R	5696482	2R_5696482_SNP [dm3] 2R_9808977_SNP [dm6]	C	G	5.680e^-5	1	INTERGENIC
3L	16949643	3L_16949643_SNP [dm3] 3L_16956543_SNP [dm6]	G	T	5.783e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16431300	3R_16431300_SNP [dm3] 3R_20605578_SNP [dm6]	G	A	5.793e^-5	1	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
2R	13902565	2R_13902565_SNP [dm3] 2R_18015060_SNP [dm6]	G	A	5.830e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16119993	2R_16119993_SNP [dm3] 2R_20232488_SNP [dm6]	A	G	5.945e^-5	1	SYNONYMOUS_CODING CG11044 UPSTREAM tRNA:G3:56EFb
3L	2670670	3L_2670670_SNP [dm3] 3L_2670670_SNP [dm6]	G	C	5.990e^-5	1	UTR_3_PRIME Fife INTRON Fife
3R	25923390	3R_25923390_SNP [dm3] 3R_30097668_SNP [dm6]	A	T	5.993e^-5	1	INTRON sima
X	1235692	X_1235692_SNP [dm3] X_1341659_SNP [dm6]	G	A	6.087e^-5	1	UPSTREAM CG11412 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10725722	2R_10725722_SNP [dm3] 2R_14838217_SNP [dm6]	T	C	6.088e^-5	1	INTERGENIC
3R	25135947	3R_25135947_SNP [dm3] 3R_29310225_SNP [dm6]	G	A	6.105e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
X	1234959	X_1234959_SNP [dm3] X_1340926_SNP [dm6]	A	G	6.196e^-5	1	INTRON CG11409
3R	8639593	3R_8639593_SNP [dm3] 3R_12813871_SNP [dm6]	G	T	6.225e^-5	1	SYNONYMOUS_CODING CG31345
2R	3123189	2R_3123189_SNP [dm3] 2R_7235684_SNP [dm6]	C	A	6.257e^-5	1	UPSTREAM Or43a INTERGENIC
3L	15906900	3L_15906900_SNP [dm3] 3L_15913800_SNP [dm6]	T	A	6.324e^-5	1	INTRON sff
2R	14125516	2R_14125516_SNP [dm3] 2R_18238011_SNP [dm6]	T	A	6.393e^-5	1	INTERGENIC
2R	9715810	2R_9715810_SNP [dm3] 2R_13828305_SNP [dm6]	A	G	6.410e^-5	1	INTRON CG6329	TF binding site BDTNP1_TFBS_dl
3R	25915456	3R_25915456_SNP [dm3] 3R_30089734_SNP [dm6]	T	G	6.413e^-5	1	INTRON sima	TF binding site mE1_TFBS_Trl
2R	14140518	2R_14140518_SNP [dm3] 2R_18253013_SNP [dm6]	T	G	6.519e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	837226	3L_837226_SNP [dm3] 3L_837226_SNP [dm6]	A	G	6.523e^-5	1	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	12001493	X_12001493_SNP [dm3] X_12107460_SNP [dm6]	A	G	6.546e^-5	1	INTRON CR43960 & 2 others
2L	16473477	2L_16473477_SNP [dm3] 2L_16473477_SNP [dm6]	C	T	6.549e^-5	1	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	6.560e^-5	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18880848	3R_18880848_SNP [dm3] 3R_23055126_SNP [dm6]	G	A	6.565e^-5	1	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_twi
3L	16949698	3L_16949698_SNP [dm3] 3L_16956598_SNP [dm6]	C	T	6.619e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17383670	3L_17383670_DEL [dm3] 3L_17390570_DEL [dm6]	TAATT	A	6.624e^-5	1	INTERGENIC
3R	25271786	3R_25271786_SNP [dm3] 3R_29446064_SNP [dm6]	A	G	6.657e^-5	1	INTRON Ptp99A
3R	7341419	3R_7341419_SNP [dm3] 3R_11515697_SNP [dm6]	T	C	6.708e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16668429	2L_16668429_SNP [dm3] 2L_16668429_SNP [dm6]	C	T	6.862e^-5	1	SPLICE_SITE_REGION Trpgamma INTRON Trpgamma
3L	417426	3L_417426_SNP [dm3] 3L_417426_SNP [dm6]	G	A	6.898e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	14128231	2R_14128231_SNP [dm3] 2R_18240726_SNP [dm6]	T	G	6.925e^-5	1	INTERGENIC
2R	12350813	2R_12350813_SNP [dm3] 2R_16463308_SNP [dm6]	A	T	7.018e^-5	1	INTERGENIC
3L	4408777	3L_4408777_SNP [dm3] 3L_4408777_SNP [dm6]	A	G	7.021e^-5	1	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	3123205	2R_3123205_SNP [dm3] 2R_7235700_SNP [dm6]	G	T	7.048e^-5	1	UPSTREAM Or43a INTERGENIC
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	7.071e^-5	1	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	11436022	3L_11436022_SNP [dm3] 3L_11442922_SNP [dm6]	T	C	7.076e^-5	1	INTERGENIC
2R	14128116	2R_14128116_SNP [dm3] 2R_18240611_SNP [dm6]	C	T	7.087e^-5	1	INTERGENIC
2R	7610994	2R_7610994_SNP [dm3] 2R_11723489_SNP [dm6]	A	T	7.187e^-5	1	INTRON pyr
2R	5590239	2R_5590239_SNP [dm3] 2R_9702734_SNP [dm6]	G	T	7.229e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3277202	3L_3277202_SNP [dm3] 3L_3277202_SNP [dm6]	T	C	7.263e^-5	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	16949691	3L_16949691_DEL [dm3] 3L_16956591_DEL [dm6]	TA	T	7.337e^-5	1	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12969353	3R_12969353_SNP [dm3] 3R_17143631_SNP [dm6]	T	C	7.508e^-5	1	DOWNSTREAM m-cup INTERGENIC
2L	1259531	2L_1259531_DEL [dm3] 2L_1259531_DEL [dm6]	TTCCCTC	T	7.520e^-5	1	INTRON robo3	TF binding site mE1_TFBS_Kr
3R	25271828	3R_25271828_SNP [dm3] 3R_29446106_SNP [dm6]	T	C	7.556e^-5	1	INTRON Ptp99A
2R	12255113	2R_12255113_SNP [dm3] 2R_16367608_SNP [dm6]	C	T	7.579e^-5	1	INTERGENIC
X	8742608	X_8742608_SNP [dm3] X_8848575_SNP [dm6]	C	G	7.619e^-5	1	INTRON CG12075
X	1215498	X_1215498_SNP [dm3] X_1321465_SNP [dm6]	T	A	7.683e^-5	1	INTRON DAAM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25929190	3R_25929190_SNP [dm3] 3R_30103468_SNP [dm6]	A	C	7.760e^-5	1	INTRON sima
3R	25135931	3R_25135931_SNP [dm3] 3R_29310209_SNP [dm6]	T	A	7.776e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
X	1229099	X_1229099_SNP [dm3] X_1335066_SNP [dm6]	A	T	7.786e^-5	1	INTRON CG11409
3R	17091617	3R_17091617_SNP [dm3] 3R_21265895_SNP [dm6]	A	G	7.925e^-5	1	DOWNSTREAM Rab1 & 1 other INTERGENIC
3L	8857709	3L_8857709_SNP [dm3] 3L_8864609_SNP [dm6]	T	C	8.006e^-5	1	INTRON dally
2R	14135755	2R_14135755_SNP [dm3] 2R_18248250_SNP [dm6]	C	G	8.047e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14135754	2R_14135754_SNP [dm3] 2R_18248249_SNP [dm6]	A	T	8.097e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25271825	3R_25271825_SNP [dm3] 3R_29446103_SNP [dm6]	T	G	8.102e^-5	1	INTRON Ptp99A
2R	8926781	2R_8926781_SNP [dm3] 2R_13039276_SNP [dm6]	A	G	8.116e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25246380	3R_25246380_SNP [dm3] 3R_29420658_SNP [dm6]	T	A	8.328e^-5	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13879213	X_13879213_SNP [dm3] X_13985180_SNP [dm6]	T	C	8.492e^-5	1	INTRON mamo
X	14431851	X_14431851_SNP [dm3] X_14537818_SNP [dm6]	G	T	8.512e^-5	1	INTERGENIC
3R	23984175	3R_23984175_SNP [dm3] 3R_28158453_SNP [dm6]	A	G	8.591e^-5	1	INTRON CG34354
3L	8574361	3L_8574361_SNP [dm3] 3L_8581261_SNP [dm6]	C	T	8.609e^-5	1	INTRON CG43078
3L	3020527	3L_3020527_SNP [dm3] 3L_3020527_SNP [dm6]	C	T	8.776e^-5	1	INTERGENIC
3R	25271821	3R_25271821_SNP [dm3] 3R_29446099_SNP [dm6]	C	A	8.794e^-5	1	INTRON Ptp99A
2L	4104062	2L_4104062_SNP [dm3] 2L_4104062_SNP [dm6]	T	A	8.858e^-5	1	INTRON ed
2R	9290014	2R_9290014_SNP [dm3] 2R_13402509_SNP [dm6]	G	A	8.975e^-5	1	INTERGENIC
2R	5696477	2R_5696477_SNP [dm3] 2R_9808972_SNP [dm6]	A	G	9.079e^-5	1	INTERGENIC
2L	16443458	2L_16443458_SNP [dm3] 2L_16443458_SNP [dm6]	G	A	9.374e^-5	1	INTRON CG5888
X	18137655	X_18137655_SNP [dm3] X_18243622_SNP [dm6]	T	G	9.430e^-5	1	UPSTREAM upd2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9794960	3L_9794960_SNP [dm3] 3L_9801860_SNP [dm6]	A	G	9.432e^-5	1	INTRON CG32052 & 1 other	TF binding site mE1_TFBS_cad
X	18845983	X_18845983_SNP [dm3] X_18951950_SNP [dm6]	T	A	9.440e^-5	1	INTRON CG43759
3L	16965936	3L_16965936_SNP [dm3] 3L_16972836_SNP [dm6]	T	C	9.441e^-5	1	INTRON Exn
3L	16966228	3L_16966228_SNP [dm3] 3L_16973128_SNP [dm6]	G	A	9.441e^-5	1	INTRON Exn
3L	21278876	3L_21278876_SNP [dm3] 3L_21285776_SNP [dm6]	T	G	9.464e^-5	1	UPSTREAM pzg & 1 other INTRON CG12974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11137623	3L_11137623_SNP [dm3] 3L_11144523_SNP [dm6]	C	A	9.483e^-5	1	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	8574359	3L_8574359_SNP [dm3] 3L_8581259_SNP [dm6]	C	T	9.585e^-5	1	INTRON CG43078
2L	2729329	2L_2729329_SNP [dm3] 2L_2729329_SNP [dm6]	T	A	9.616e^-5	1	UPSTREAM CG31689 INTRON CG31689
3R	24217548	3R_24217548_SNP [dm3] 3R_28391826_SNP [dm6]	T	A	9.639e^-5	1	INTERGENIC
2L	2712722	2L_2712722_SNP [dm3] 2L_2712722_SNP [dm6]	C	T	9.680e^-5	1	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2R	12350821	2R_12350821_SNP [dm3] 2R_16463316_SNP [dm6]	G	A	9.703e^-5	1	INTERGENIC
X	21908682	X_21908682_SNP [dm3] X_22506846_SNP [dm6]	A	T	9.780e^-5	1	INTRON l_1_G0196	transposable element FlyBase
3L	2587601	3L_2587601_SNP [dm3] 3L_2587601_SNP [dm6]	T	A	9.822e^-5	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5065436	2L_5065436_SNP [dm3] 2L_5065436_SNP [dm6]	G	C	9.863e^-5	1	UPSTREAM qtc INTRON qtc
3L	17194823	3L_17194823_SNP [dm3] 3L_17201723_SNP [dm6]	T	A	9.885e^-5	1	INTRON Rbp6
2R	12044169	2R_12044169_SNP [dm3] 2R_16156664_SNP [dm6]	C	T	9.934e^-5	1	DOWNSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	8574310	3L_8574310_SNP [dm3] 3L_8581210_SNP [dm6]	C	G	9.941e^-5	1	INTRON CG43078
X	1213593	X_1213593_SNP [dm3] X_1319560_SNP [dm6]	T	C	1.038e^-4	1	INTRON DAAM
X	5033133	X_5033133_SNP [dm3] X_5139100_SNP [dm6]	T	C	1.054e^-4	1	INTRON rg & 1 other
3R	10180244	3R_10180244_SNP [dm3] 3R_14354522_SNP [dm6]	G	A	1.066e^-4	1	INTRON NK7.1
X	4270644	X_4270644_SNP [dm3] X_4376611_SNP [dm6]	C	T	1.086e^-4	1	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12959160	3L_12959160_SNP [dm3] 3L_12966060_SNP [dm6]	T	C	1.087e^-4	1	UPSTREAM Or69a INTRON Or69a
2R	12350761	2R_12350761_SNP [dm3] 2R_16463256_SNP [dm6]	C	A	1.098e^-4	1	INTERGENIC
X	9384310	X_9384310_SNP [dm3] X_9490277_SNP [dm6]	G	A	1.101e^-4	1	INTRON mgl
3L	7479823	3L_7479823_SNP [dm3] 3L_7486723_SNP [dm6]	A	G	1.104e^-4	1	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2114532	3L_2114532_SNP [dm3] 3L_2114532_SNP [dm6]	T	G	1.110e^-4	1	INTRON sls
X	1213768	X_1213768_SNP [dm3] X_1319735_SNP [dm6]	A	G	1.112e^-4	1	INTRON DAAM
3L	3264788	3L_3264788_SNP [dm3] 3L_3264788_SNP [dm6]	G	C	1.114e^-4	1	INTRON ckd
3R	11718697	3R_11718697_SNP [dm3] 3R_15892975_SNP [dm6]	A	T	1.127e^-4	1	INTRON CG14877
2R	15247729	2R_15247729_SNP [dm3] 2R_19360224_SNP [dm6]	T	C	1.132e^-4	1	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_sens
X	1227743	X_1227743_SNP [dm3] X_1333710_SNP [dm6]	G	A	1.134e^-4	1	UTR_5_PRIME CG11409	TF binding site mE1_TFBS_chinmo
2L	9679361	2L_9679361_SNP [dm3] 2L_9679361_SNP [dm6]	A	G	1.139e^-4	1	INTERGENIC
3L	3867758	3L_3867758_SNP [dm3] 3L_3867758_SNP [dm6]	T	G	1.139e^-4	1	INTERGENIC
2R	14135298	2R_14135298_SNP [dm3] 2R_18247793_SNP [dm6]	A	G	1.146e^-4	1	INTERGENIC
X	18226109	X_18226109_SNP [dm3] X_18332076_SNP [dm6]	G	T	1.160e^-4	1	INTRON CG6123	TF binding site mE1_TFBS_inv
2R	5696479	2R_5696479_INS [dm3] 2R_9808974_INS [dm6]	T	TAT	1.163e^-4	1	INTERGENIC
X	18134538	X_18134538_SNP [dm3] X_18240505_SNP [dm6]	T	A	1.190e^-4	1	DOWNSTREAM upd2 INTERGENIC
3R	25918857	3R_25918857_SNP [dm3] 3R_30093135_SNP [dm6]	G	A	1.194e^-4	1	INTRON sima
3R	25268964	3R_25268964_SNP [dm3] 3R_29443242_SNP [dm6]	A	G	1.210e^-4	1	INTRON Ptp99A
3L	2571564	3L_2571564_SNP [dm3] 3L_2571564_SNP [dm6]	C	T	1.232e^-4	1	INTRON msn
2L	3982486	2L_3982486_SNP [dm3] 2L_3982486_SNP [dm6]	G	A	1.242e^-4	1	INTRON fred
X	20483059	X_20483059_INS [dm3] X_20612032_INS [dm6]	T	TA	1.243e^-4	1	INTRON RunxA
3L	2054075	3L_2054075_SNP [dm3] 3L_2054075_SNP [dm6]	A	G	1.248e^-4	1	SYNONYMOUS_CODING sls INTRON sls
2R	15780240	2R_15780240_SNP [dm3] 2R_19892735_SNP [dm6]	C	T	1.248e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	18331331	2R_18331331_SNP [dm3] 2R_22443826_SNP [dm6]	G	A	1.250e^-4	1	INTERGENIC
2R	10548522	2R_10548522_SNP [dm3] 2R_14661017_SNP [dm6]	A	T	1.253e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9172267	X_9172267_DEL [dm3] X_9278234_DEL [dm6]	GACCG	G	1.253e^-4	1	INTRON c11.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19179249	3L_19179249_SNP [dm3] 3L_19186149_SNP [dm6]	A	G	1.259e^-4	1	INTRON fz2
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	1.269e^-4	1	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12571249	2L_12571249_SNP [dm3] 2L_12571249_SNP [dm6]	C	T	1.286e^-4	1	UPSTREAM CR44598 EXON CR44597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10869125	2R_10869125_DEL [dm3] 2R_14981620_DEL [dm6]	ACA	A	1.300e^-4	1	UTR_5_PRIME pcs DOWNSTREAM ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8289716	2L_8289716_SNP [dm3] 2L_8289716_SNP [dm6]	G	C	1.303e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14987097	2R_14987097_SNP [dm3] 2R_19099592_SNP [dm6]	C	T	1.304e^-4	1	INTRON 5-HT1A
2L	907410	2L_907410_SNP [dm3] 2L_907410_SNP [dm6]	T	C	1.331e^-4	1	INTERGENIC
2R	19372326	2R_19372326_SNP [dm3] 2R_23484803_SNP [dm6]	A	T	1.334e^-4	1	INTRON CG43795
3R	25135736	3R_25135736_SNP [dm3] 3R_29310014_SNP [dm6]	G	T	1.342e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	8214447	3L_8214447_SNP [dm3] 3L_8221347_SNP [dm6]	C	G	1.345e^-4	1	UPSTREAM CG13678 INTERGENIC
2R	14090710	2R_14090710_SNP [dm3] 2R_18203205_SNP [dm6]	T	C	1.345e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3040312	3L_3040312_SNP [dm3] 3L_3040312_SNP [dm6]	T	C	1.345e^-4	1	UTR_3_PRIME CG2162	TF binding site BDTNP1_TFBS_dl
X	15178261	X_15178261_SNP [dm3] X_15284228_SNP [dm6]	A	G	1.358e^-4	1	INTERGENIC
2R	18068629	2R_18068629_SNP [dm3] 2R_22181124_SNP [dm6]	T	A	1.360e^-4	1	INTRON CG11170 & 1 other
2R	16200210	2R_16200210_SNP [dm3] 2R_20312705_SNP [dm6]	T	C	1.380e^-4	1	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8155933	X_8155933_INS [dm3] X_8261900_INS [dm6]	T	TAAT	1.390e^-4	1	INTRON CG1632
3L	14807767	3L_14807767_SNP [dm3] 3L_14814667_SNP [dm6]	G	C	1.390e^-4	1	INTRON CG17839
X	9455328	X_9455328_SNP [dm3] X_9561295_SNP [dm6]	G	A	1.437e^-4	1	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5033588	3R_5033588_SNP [dm3] 3R_9207866_SNP [dm6]	C	G	1.438e^-4	1	INTRON pum	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8778409	X_8778409_SNP [dm3] X_8884376_SNP [dm6]	G	A	1.440e^-4	1	INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17226287	3L_17226287_DEL [dm3] 3L_17233187_DEL [dm6]	TTCTCAAAAT	T	1.457e^-4	1	INTRON Rbp6
2L	4104053	2L_4104053_SNP [dm3] 2L_4104053_SNP [dm6]	A	T	1.462e^-4	1	INTRON ed
2L	12305015	2L_12305015_SNP [dm3] 2L_12305015_SNP [dm6]	T	C	1.465e^-4	1	INTRON aret
2L	6500917	2L_6500917_SNP [dm3] 2L_6500917_SNP [dm6]	C	T	1.468e^-4	1	INTRON CG31637
3R	15496908	3R_15496908_SNP [dm3] 3R_19671186_SNP [dm6]	A	T	1.472e^-4	1	UPSTREAM Naam DOWNSTREAM CG7432 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18332702	2R_18332702_SNP [dm3] 2R_22445197_SNP [dm6]	T	C	1.473e^-4	1	INTERGENIC
2L	3263487	2L_3263487_SNP [dm3] 2L_3263487_SNP [dm6]	A	T	1.480e^-4	1	DOWNSTREAM CR45706 INTERGENIC
3L	8574346	3L_8574346_SNP [dm3] 3L_8581246_SNP [dm6]	A	G	1.487e^-4	1	INTRON CG43078
3R	11718698	3R_11718698_SNP [dm3] 3R_15892976_SNP [dm6]	T	G	1.496e^-4	1	INTRON CG14877
2R	10864066	2R_10864066_SNP [dm3] 2R_14976561_SNP [dm6]	T	A	1.497e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25915258	3R_25915258_SNP [dm3] 3R_30089536_SNP [dm6]	C	A	1.504e^-4	1	INTRON sima
3R	8741177	3R_8741177_SNP [dm3] 3R_12915455_SNP [dm6]	T	C	1.514e^-4	1	UPSTREAM beat-Vb INTERGENIC
3R	7522002	3R_7522002_SNP [dm3] 3R_11696280_SNP [dm6]	T	C	1.517e^-4	1	UPSTREAM CG14717 INTERGENIC
2R	10195292	2R_10195292_SNP [dm3] 2R_14307787_SNP [dm6]	C	A	1.522e^-4	1	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22599563	3R_22599563_SNP [dm3] 3R_26773841_SNP [dm6]	T	G	1.532e^-4	1	INTERGENIC
2L	9017254	2L_9017254_SNP [dm3] 2L_9017254_SNP [dm6]	A	G	1.546e^-4	1	INTERGENIC
3L	11341755	3L_11341755_DEL [dm3] 3L_11348655_DEL [dm6]	GGTTTGT	G	1.551e^-4	1	DOWNSTREAM CR45251 INTERGENIC
3R	12648331	3R_12648331_SNP [dm3] 3R_16822609_SNP [dm6]	C	A	1.555e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2731986	2L_2731986_SNP [dm3] 2L_2731986_SNP [dm6]	C	A	1.570e^-4	1	INTRON CG31689
X	1215278	X_1215278_SNP [dm3] X_1321245_SNP [dm6]	A	G	1.597e^-4	1	INTRON DAAM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	1797532	3L_1797532_SNP [dm3] 3L_1797532_SNP [dm6]	G	T	1.605e^-4	1	SYNONYMOUS_CODING CG12020 DOWNSTREAM Cdc37	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	8630707	3R_8630707_SNP [dm3] 3R_12804985_SNP [dm6]	C	A	1.612e^-4	1	INTERGENIC
2R	12787021	2R_12787021_SNP [dm3] 2R_16899516_SNP [dm6]	A	C	1.616e^-4	1	SYNONYMOUS_CODING inaC
X	6131110	X_6131110_SNP [dm3] X_6237077_SNP [dm6]	A	C	1.628e^-4	1	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC
2R	6449198	2R_6449198_SNP [dm3] 2R_10561693_SNP [dm6]	G	C	1.632e^-4	1	UTR_5_PRIME psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2949642	3L_2949642_SNP [dm3] 3L_2949642_SNP [dm6]	G	A	1.639e^-4	1	DOWNSTREAM CG32846 INTRON Shab
2R	9923958	2R_9923958_SNP [dm3] 2R_14036453_SNP [dm6]	A	C	1.645e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	837206	3L_837206_SNP [dm3] 3L_837206_SNP [dm6]	C	T	1.651e^-4	1	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	1215896	X_1215896_SNP [dm3] X_1321863_SNP [dm6]	A	C	1.657e^-4	1	UPSTREAM fs_1_N INTRON DAAM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12718677	3R_12718677_SNP [dm3] 3R_16892955_SNP [dm6]	A	G	1.661e^-4	1	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	837236	3L_837236_SNP [dm3] 3L_837236_SNP [dm6]	C	T	1.674e^-4	1	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2054063	3L_2054063_SNP [dm3] 3L_2054063_SNP [dm6]	G	A	1.678e^-4	1	SYNONYMOUS_CODING sls INTRON sls
2L	1259540	2L_1259540_INS [dm3] 2L_1259540_INS [dm6]	A	GTGTGGGAATG...	1.683e^-4	1	INTRON robo3	TF binding site mE1_TFBS_Kr
3R	25918225	3R_25918225_SNP [dm3] 3R_30092503_SNP [dm6]	G	T	1.687e^-4	1	INTRON sima
3L	10525077	3L_10525077_SNP [dm3] 3L_10531977_SNP [dm6]	G	A	1.692e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25271832	3R_25271832_INS [dm3] 3R_29446110_INS [dm6]	C	TCAATTAAAACAAAAAT...	1.697e^-4	1	INTRON Ptp99A
2L	5362840	2L_5362840_SNP [dm3] 2L_5362840_SNP [dm6]	A	C	1.699e^-4	1	NON_SYNONYMOUS_CODING nompC INTRON nompC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
3R	12894148	3R_12894148_DEL [dm3] 3R_17068426_DEL [dm6]	AATAGATACCTGCAT...	A	1.701e^-4	1	INTRON Dad
X	1227571	X_1227571_SNP [dm3] X_1333538_SNP [dm6]	T	G	1.702e^-4	1	SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
X	12622961	X_12622961_INS [dm3] X_12728928_INS [dm6]	A	AGA	1.704e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3L	15001398	3L_15001398_SNP [dm3] 3L_15008298_SNP [dm6]	G	C	1.704e^-4	1	INTRON Reck	TF binding site BDTNP1_TFBS_twi
3L	15715227	3L_15715227_SNP [dm3] 3L_15722127_SNP [dm6]	G	A	1.714e^-4	1	UTR_3_PRIME comm DOWNSTREAM comm
3L	13116862	3L_13116862_SNP [dm3] 3L_13123762_SNP [dm6]	C	T	1.748e^-4	1	INTERGENIC
2R	12677724	2R_12677724_SNP [dm3] 2R_16790219_SNP [dm6]	T	A	1.756e^-4	1	SYNONYMOUS_CODING CG5522 INTRON CG5522
3L	24297439	3L_24297439_SNP [dm3] 3L_24304339_SNP [dm6]	A	T	1.763e^-4	1	INTERGENIC
3R	25271820	3R_25271820_SNP [dm3] 3R_29446098_SNP [dm6]	C	T	1.764e^-4	1	INTRON Ptp99A
2L	12999472	2L_12999472_SNP [dm3] 2L_12999472_SNP [dm6]	A	G	1.779e^-4	1	INTRON CG12404	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	9907871	2R_9907871_SNP [dm3] 2R_14020366_SNP [dm6]	A	C	1.786e^-4	1	INTRON mam
3L	837110	3L_837110_SNP [dm3] 3L_837110_SNP [dm6]	G	A	1.788e^-4	1	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	20398527	X_20398527_SNP [dm3] X_20527500_SNP [dm6]	G	A	1.803e^-4	1	UPSTREAM CG42579 INTERGENIC
3R	16509560	3R_16509560_SNP [dm3] 3R_20683838_SNP [dm6]	C	T	1.806e^-4	1	INTERGENIC
2L	15397006	2L_15397006_SNP [dm3] 2L_15397006_SNP [dm6]	G	A	1.806e^-4	1	DOWNSTREAM CR44859 INTERGENIC
3R	3260715	3R_3260715_SNP [dm3] 3R_7434993_SNP [dm6]	C	A	1.829e^-4	1	INTERGENIC
2L	3435208	2L_3435208_SNP [dm3] 2L_3435208_SNP [dm6]	C	G	1.854e^-4	1	INTERGENIC
3L	8574315	3L_8574315_MNP [dm3] 3L_8581215_MNP [dm6]	TTT	AAG	1.868e^-4	1	INTRON CG43078
2R	6642382	2R_6642382_SNP [dm3] 2R_10754877_SNP [dm6]	A	C	1.869e^-4	1	INTRON CG33144	TF binding site mE1_TFBS_chinmo
2L	12486674	2L_12486674_SNP [dm3] 2L_12486674_SNP [dm6]	G	A	1.872e^-4	1	INTRON bun
3L	4405526	3L_4405526_SNP [dm3] 3L_4405526_SNP [dm6]	G	A	1.877e^-4	1	SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13676940	3R_13676940_SNP [dm3] 3R_17851218_SNP [dm6]	T	C	1.882e^-4	1	INTRON tinc
X	7358489	X_7358489_DEL [dm3] X_7464456_DEL [dm6]	GAGCA	TTTG	1.888e^-4	1	INTERGENIC
X	18112717	X_18112717_SNP [dm3] X_18218684_SNP [dm6]	G	A	1.891e^-4	1	INTRON CG33639
2R	8674641	2R_8674641_SNP [dm3] 2R_12787136_SNP [dm6]	G	A	1.893e^-4	1	INTRON sca EXON CR45137
3L	17562649	3L_17562649_SNP [dm3] 3L_17569549_SNP [dm6]	A	T	1.893e^-4	1	INTRON Eip74EF
2L	4104069	2L_4104069_MNP [dm3] 2L_4104069_MNP [dm6]	AGA	TTG	1.895e^-4	1	INTRON ed
2R	14510645	2R_14510645_SNP [dm3] 2R_18623140_SNP [dm6]	G	A	1.897e^-4	1	SYNONYMOUS_CODING Atg7 DOWNSTREAM CG5335
2L	11822907	2L_11822907_SNP [dm3] 2L_11822907_SNP [dm6]	T	C	1.900e^-4	1	INTRON Pde1c
X	13462313	X_13462313_SNP [dm3] X_13568280_SNP [dm6]	C	A	1.906e^-4	1	INTRON Tango13
2L	20810679	2L_20810679_DEL [dm3] 2L_20810679_DEL [dm6]	AAA	A	1.924e^-4	1	INTRON CG9328
X	18230608	X_18230608_SNP [dm3] X_18336575_SNP [dm6]	G	T	1.949e^-4	1	INTRON CG6123
2L	4104064	2L_4104064_SNP [dm3] 2L_4104064_SNP [dm6]	A	C	1.952e^-4	1	INTRON ed
2R	20211885	2R_20211885_SNP [dm3] 2R_24324362_SNP [dm6]	A	T	1.965e^-4	1	UPSTREAM CR44810 INTERGENIC
3L	17555227	3L_17555227_SNP [dm3] 3L_17562127_SNP [dm6]	C	T	1.966e^-4	1	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24068063	3R_24068063_SNP [dm3] 3R_28242341_SNP [dm6]	C	A	1.968e^-4	1	INTERGENIC
3L	951327	3L_951327_SNP [dm3] 3L_951327_SNP [dm6]	A	G	1.975e^-4	1	INTRON Glut1
X	1235722	X_1235722_SNP [dm3] X_1341689_SNP [dm6]	A	C	1.976e^-4	1	UPSTREAM CG11412 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9077295	3R_9077295_SNP [dm3] 3R_13251573_SNP [dm6]	C	A	1.977e^-4	1	INTRON Ace
3R	3260686	3R_3260686_SNP [dm3] 3R_7434964_SNP [dm6]	G	A	1.987e^-4	1	INTERGENIC
3L	15910866	3L_15910866_SNP [dm3] 3L_15917766_SNP [dm6]	A	C	1.988e^-4	1	INTRON sff
3L	13208639	3L_13208639_SNP [dm3] 3L_13215539_SNP [dm6]	G	T	1.989e^-4	1	UPSTREAM CR43914 EXON CR45097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10683112	3R_10683112_SNP [dm3] 3R_14857390_SNP [dm6]	C	T	1.989e^-4	1	INTRON btsz
X	6355234	X_6355234_SNP [dm3] X_6461201_SNP [dm6]	G	A	1.990e^-4	1	INTRON CG42340
X	10431632	X_10431632_SNP [dm3] X_10537599_SNP [dm6]	A	G	1.995e^-4	1	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10018583	2L_10018583_INS [dm3] 2L_10018583_INS [dm6]	T	TT	2.006e^-4	1	INTERGENIC
2L	10492250	2L_10492250_SNP [dm3] 2L_10492250_SNP [dm6]	C	G	2.009e^-4	1	UTR_3_PRIME Myo31DF UPSTREAM CG13144	TF binding site mE1_TFBS_cad
3L	1071531	3L_1071531_SNP [dm3] 3L_1071531_SNP [dm6]	A	C	2.014e^-4	1	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	1025032	2L_1025032_SNP [dm3] 2L_1025032_SNP [dm6]	G	A	2.019e^-4	1	INTRON IA-2
3R	13620026	3R_13620026_SNP [dm3] 3R_17794304_SNP [dm6]	T	C	2.021e^-4	1	START_GAINED CG43102 UTR_5_PRIME CG43102 UPSTREAM CG7713	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3123191	2R_3123191_SNP [dm3] 2R_7235686_SNP [dm6]	G	T	2.026e^-4	1	UPSTREAM Or43a INTERGENIC
X	14718027	X_14718027_SNP [dm3] X_14823994_SNP [dm6]	A	T	2.029e^-4	1	INTRON rut
3L	19166080	3L_19166080_SNP [dm3] 3L_19172980_SNP [dm6]	C	T	2.031e^-4	1	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	13812771	2L_13812771_SNP [dm3] 2L_13812771_SNP [dm6]	A	T	2.034e^-4	1	NON_SYNONYMOUS_CODING CG16888 UTR_3_PRIME CG16865 DOWNSTREAM CG16865	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12445649	3R_12445649_SNP [dm3] 3R_16619927_SNP [dm6]	C	T	2.039e^-4	1	UPSTREAM CG14893 DOWNSTREAM CG17560 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	25914969	3R_25914969_SNP [dm3] 3R_30089247_SNP [dm6]	A	G	2.040e^-4	1	INTRON sima
2L	4214078	2L_4214078_SNP [dm3] 2L_4214078_SNP [dm6]	T	C	2.050e^-4	1	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8071076	2L_8071076_SNP [dm3] 2L_8071076_SNP [dm6]	G	C	2.052e^-4	1	DOWNSTREAM MED20 INTRON poe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4857123	X_4857123_SNP [dm3] X_4963090_SNP [dm6]	G	C	2.055e^-4	1	INTRON CR44833
2R	12350866	2R_12350866_SNP [dm3] 2R_16463361_SNP [dm6]	T	C	2.058e^-4	1	INTERGENIC
3L	10199126	3L_10199126_SNP [dm3] 3L_10206026_SNP [dm6]	T	C	2.060e^-4	1	EXON CR44538
2R	16939619	2R_16939619_SNP [dm3] 2R_21052114_SNP [dm6]	G	A	2.077e^-4	1	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8939639	X_8939639_SNP [dm3] X_9045606_SNP [dm6]	C	T	2.079e^-4	1	INTRON CR43836 & 1 other
2R	20213835	2R_20213835_SNP [dm3] 2R_24326312_SNP [dm6]	A	G	2.079e^-4	1	INTRON CR44810
2R	17947012	2R_17947012_SNP [dm3] 2R_22059507_SNP [dm6]	C	T	2.082e^-4	1	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11767875	3R_11767875_SNP [dm3] 3R_15942153_SNP [dm6]	C	T	2.085e^-4	1	INTRON Sap47
3L	7479887	3L_7479887_SNP [dm3] 3L_7486787_SNP [dm6]	T	A	2.092e^-4	1	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5302355	X_5302355_SNP [dm3] X_5408322_SNP [dm6]	A	T	2.098e^-4	1	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2054071	3L_2054071_SNP [dm3] 3L_2054071_SNP [dm6]	T	C	2.124e^-4	1	NON_SYNONYMOUS_CODING sls INTRON sls
3L	9699088	3L_9699088_SNP [dm3] 3L_9705988_SNP [dm6]	T	G	2.133e^-4	1	SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9706370	2R_9706370_SNP [dm3] 2R_13818865_SNP [dm6]	A	T	2.136e^-4	1	UTR_3_PRIME stj DOWNSTREAM stj & 1 other
3L	2995370	3L_2995370_SNP [dm3] 3L_2995370_SNP [dm6]	C	T	2.138e^-4	1	SYNONYMOUS_CODING CG2113
2R	10575491	2R_10575491_SNP [dm3] 2R_14687986_SNP [dm6]	C	G	2.140e^-4	1	INTRON mspo
2R	8616786	2R_8616786_SNP [dm3] 2R_12729281_SNP [dm6]	G	T	2.144e^-4	1	INTRON CG42663
2L	11328997	2L_11328997_SNP [dm3] 2L_11328997_SNP [dm6]	C	A	2.146e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	21276942	2L_21276942_SNP [dm3] 2L_21276942_SNP [dm6]	C	T	2.154e^-4	1	INTRON CG8671
3R	14564966	3R_14564966_SNP [dm3] 3R_18739244_SNP [dm6]	G	T	2.156e^-4	1	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9929783	2R_9929783_SNP [dm3] 2R_14042278_SNP [dm6]	C	A	2.165e^-4	1	INTRON mam
3R	13103772	3R_13103772_SNP [dm3] 3R_17278050_SNP [dm6]	G	T	2.166e^-4	1	INTERGENIC
3L	11342496	3L_11342496_DEL [dm3] 3L_11349396_DEL [dm6]	TGTAT	T	2.167e^-4	1	EXON CR45251
2R	10876484	2R_10876484_SNP [dm3] 2R_14988979_SNP [dm6]	G	A	2.182e^-4	1	SYNONYMOUS_CODING CG7639 INTRON pcs	TF binding site mE1_TFBS_sens
3L	13099954	3L_13099954_SNP [dm3] 3L_13106854_SNP [dm6]	A	G	2.185e^-4	1	INTERGENIC
3L	8574313	3L_8574313_SNP [dm3] 3L_8581213_SNP [dm6]	A	C	2.198e^-4	1	INTRON CG43078
2L	15411806	2L_15411806_SNP [dm3] 2L_15411806_SNP [dm6]	T	C	2.198e^-4	1	INTERGENIC
3L	15908941	3L_15908941_SNP [dm3] 3L_15915841_SNP [dm6]	A	G	2.204e^-4	1	INTRON sff
3L	3264787	3L_3264787_SNP [dm3] 3L_3264787_SNP [dm6]	A	G	2.208e^-4	1	INTRON ckd
2R	14987293	2R_14987293_SNP [dm3] 2R_19099788_SNP [dm6]	C	A	2.214e^-4	1	INTRON 5-HT1A
2L	1722715	2L_1722715_SNP [dm3] 2L_1722715_SNP [dm6]	C	T	2.232e^-4	1	INTRON Rim2
2L	15051513	2L_15051513_SNP [dm3] 2L_15051513_SNP [dm6]	A	T	2.233e^-4	1	INTRON ck	regulatory region REDfly_CRMs
2R	14125093	2R_14125093_SNP [dm3] 2R_18237588_SNP [dm6]	T	G	2.244e^-4	1	INTERGENIC
3L	5929937	3L_5929937_SNP [dm3] 3L_5936837_SNP [dm6]	G	A	2.255e^-4	1	INTRON CG33993
2R	10874173	2R_10874173_DEL [dm3] 2R_14986668_DEL [dm6]	TT	T	2.258e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	4618585	X_4618585_SNP [dm3] X_4724552_SNP [dm6]	A	T	2.263e^-4	1	INTRON Proc-R
3L	17405953	3L_17405953_SNP [dm3] 3L_17412853_SNP [dm6]	C	G	2.265e^-4	1	INTRON blot	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20435089	3R_20435089_DEL [dm3] 3R_24609367_DEL [dm6]	ATGTA	A	2.270e^-4	1	INTRON mld
2R	10874235	2R_10874235_SNP [dm3] 2R_14986730_SNP [dm6]	C	T	2.277e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10874243	2R_10874243_SNP [dm3] 2R_14986738_SNP [dm6]	A	G	2.277e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	14378658	X_14378658_SNP [dm3] X_14484625_SNP [dm6]	C	T	2.279e^-4	1	INTERGENIC
X	19737738	X_19737738_SNP [dm3] X_19843705_SNP [dm6]	G	T	2.282e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da
3L	11295532	3L_11295532_SNP [dm3] 3L_11302432_SNP [dm6]	T	C	2.298e^-4	1	INTERGENIC
3R	8184383	3R_8184383_SNP [dm3] 3R_12358661_SNP [dm6]	A	G	2.312e^-4	1	INTERGENIC
2L	15079201	2L_15079201_SNP [dm3] 2L_15079201_SNP [dm6]	A	T	2.316e^-4	1	INTRON CG15270	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17942833	2R_17942833_SNP [dm3] 2R_22055328_SNP [dm6]	T	G	2.327e^-4	1	INTERGENIC
3L	5930900	3L_5930900_SNP [dm3] 3L_5937800_SNP [dm6]	A	T	2.330e^-4	1	INTRON CG33993
3L	10094548	3L_10094548_SNP [dm3] 3L_10101448_SNP [dm6]	T	G	2.344e^-4	1	UPSTREAM CG42826 INTRON dpr6
X	12002657	X_12002657_SNP [dm3] X_12108624_SNP [dm6]	G	A	2.345e^-4	1	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
3R	25914532	3R_25914532_SNP [dm3] 3R_30088810_SNP [dm6]	G	A	2.353e^-4	1	INTRON sima
3R	21651066	3R_21651066_SNP [dm3] 3R_25825344_SNP [dm6]	T	C	2.363e^-4	1	UPSTREAM CR44949 INTERGENIC
2R	19000973	2R_19000973_SNP [dm3] 2R_23113450_SNP [dm6]	T	A	2.363e^-4	1	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3480932	X_3480932_SNP [dm3] X_3586899_SNP [dm6]	A	G	2.363e^-4	1	INTRON AstA-R1
3R	24067968	3R_24067968_SNP [dm3] 3R_28242246_SNP [dm6]	A	C	2.372e^-4	1	INTERGENIC
3L	6072114	3L_6072114_SNP [dm3] 3L_6079014_SNP [dm6]	T	C	2.375e^-4	1	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
X	18231396	X_18231396_SNP [dm3] X_18337363_SNP [dm6]	T	C	2.376e^-4	1	INTRON CG6123
3L	12269420	3L_12269420_SNP [dm3] 3L_12276320_SNP [dm6]	T	G	2.390e^-4	1	INTRON CG4300	TF binding site BDTNP1_TFBS_dl
3L	19185369	3L_19185369_SNP [dm3] 3L_19192269_SNP [dm6]	T	C	2.405e^-4	1	INTRON fz2
3R	23188465	3R_23188465_SNP [dm3] 3R_27362743_SNP [dm6]	T	C	2.409e^-4	1	SYNONYMOUS_CODING CG42534
3R	18477065	3R_18477065_SNP [dm3] 3R_22651343_SNP [dm6]	A	T	2.410e^-4	1	INTRON CG45058
2L	2313488	2L_2313488_SNP [dm3] 2L_2313488_SNP [dm6]	A	T	2.411e^-4	1	INTRON CG9967 & 1 other
X	12331603	X_12331603_SNP [dm3] X_12437570_SNP [dm6]	T	C	2.413e^-4	1	INTRON Pkcdelta
3L	12858335	3L_12858335_SNP [dm3] 3L_12865235_SNP [dm6]	G	A	2.417e^-4	1	INTERGENIC
3L	13293007	3L_13293007_SNP [dm3] 3L_13299907_SNP [dm6]	A	T	2.421e^-4	1	UTR_3_PRIME CG43147 UPSTREAM CG42481
2R	8926787	2R_8926787_DEL [dm3] 2R_13039282_DEL [dm6]	CG	C	2.422e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13221033	2R_13221033_SNP [dm3] 2R_17333528_SNP [dm6]	A	C	2.431e^-4	1	INTRON mbl
3R	12038830	3R_12038830_SNP [dm3] 3R_16213108_SNP [dm6]	T	C	2.432e^-4	1	UPSTREAM CR45642 INTERGENIC
2L	4215269	2L_4215269_SNP [dm3] 2L_4215269_SNP [dm6]	T	C	2.441e^-4	1	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17779848	3R_17779848_SNP [dm3] 3R_21954126_SNP [dm6]	A	G	2.444e^-4	1	INTRON Eip93F
2R	17994767	2R_17994767_SNP [dm3] 2R_22107262_SNP [dm6]	G	A	2.446e^-4	1	DOWNSTREAM Vrp1 INTRON Vrp1
2L	4053578	2L_4053578_SNP [dm3] 2L_4053578_SNP [dm6]	T	G	2.449e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8574349	3L_8574349_MNP [dm3] 3L_8581249_MNP [dm6]	TTCC	CCAT	2.451e^-4	1	INTRON CG43078
2L	13833883	2L_13833883_SNP [dm3] 2L_13833883_SNP [dm6]	C	T	2.465e^-4	1	SYNONYMOUS_CODING RpII33 UPSTREAM CG33649 & 1 other DOWNSTREAM mRpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25164706	3R_25164706_DEL [dm3] 3R_29338984_DEL [dm6]	GG	G	2.465e^-4	1	INTERGENIC
2R	12251188	2R_12251188_SNP [dm3] 2R_16363683_SNP [dm6]	A	G	2.466e^-4	1	SYNONYMOUS_CODING CG15711 DOWNSTREAM CG6262
2R	20214260	2R_20214260_INS [dm3] 2R_24326737_INS [dm6]	A	TTTTTTCTTTATCTTTATTT...	2.469e^-4	1	INTRON CR44810
3L	13081948	3L_13081948_SNP [dm3] 3L_13088848_SNP [dm6]	G	T	2.478e^-4	1	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8355367	2L_8355367_SNP [dm3] 2L_8355367_SNP [dm6]	C	T	2.496e^-4	1	DOWNSTREAM CG7627 & 1 other INTERGENIC
3L	11342187	3L_11342187_SNP [dm3] 3L_11349087_SNP [dm6]	A	T	2.499e^-4	1	DOWNSTREAM CR45251 INTERGENIC
2R	11368081	2R_11368081_SNP [dm3] 2R_15480576_SNP [dm6]	A	T	2.504e^-4	1	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11368108	2R_11368108_DEL [dm3] 2R_15480603_DEL [dm6]	AAACAC	A	2.511e^-4	1	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2844909	2L_2844909_SNP [dm3] 2L_2844909_SNP [dm6]	A	C	2.513e^-4	1	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558	TF binding site mE1_TFBS_cad
3R	19321586	3R_19321586_SNP [dm3] 3R_23495864_SNP [dm6]	C	A	2.527e^-4	1	INTERGENIC
2R	14124629	2R_14124629_SNP [dm3] 2R_18237124_SNP [dm6]	T	C	2.528e^-4	1	DOWNSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13676631	3R_13676631_DEL [dm3] 3R_17850909_DEL [dm6]	TT	T	2.529e^-4	1	INTRON tinc
3R	4226391	3R_4226391_DEL [dm3] 3R_8400669_DEL [dm6]	ATATGA	A	2.533e^-4	1	INTRON CG45263
2R	17297296	2R_17297296_SNP [dm3] 2R_21409791_SNP [dm6]	C	A	2.537e^-4	1	INTRON Sdc
X	12017407	X_12017407_SNP [dm3] X_12123374_SNP [dm6]	A	T	2.539e^-4	1	INTRON Ten-a
3R	7867979	3R_7867979_SNP [dm3] 3R_12042257_SNP [dm6]	G	T	2.540e^-4	1	INTRON CG14736
3R	23188468	3R_23188468_SNP [dm3] 3R_27362746_SNP [dm6]	C	T	2.541e^-4	1	SYNONYMOUS_CODING CG42534
3L	5185385	3L_5185385_SNP [dm3] 3L_5192285_SNP [dm6]	A	T	2.541e^-4	1	INTRON shep
3L	9699082	3L_9699082_SNP [dm3] 3L_9705982_SNP [dm6]	G	C	2.544e^-4	1	SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15465622	2L_15465622_SNP [dm3] 2L_15465622_SNP [dm6]	C	T	2.549e^-4	1	INTERGENIC
2L	3160915	2L_3160915_SNP [dm3] 2L_3160915_SNP [dm6]	G	T	2.557e^-4	1	SYNONYMOUS_CODING gkt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7283415	2R_7283415_SNP [dm3] 2R_11395910_SNP [dm6]	A	G	2.572e^-4	1	INTRON sprt	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	13292303	3L_13292303_SNP [dm3] 3L_13299203_SNP [dm6]	T	A	2.574e^-4	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7834563	2R_7834563_SNP [dm3] 2R_11947058_SNP [dm6]	A	G	2.577e^-4	1	INTRON CG13188
3L	5135366	3L_5135366_SNP [dm3] 3L_5142266_SNP [dm6]	T	G	2.582e^-4	1	UTR_5_PRIME CG4623 UPSTREAM CG10672
2R	12903689	2R_12903689_SNP [dm3] 2R_17016184_SNP [dm6]	G	A	2.586e^-4	1	UPSTREAM Ehbp1 DOWNSTREAM CG8963 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	15731615	2L_15731615_SNP [dm3] 2L_15731615_SNP [dm6]	G	A	2.593e^-4	1	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11134974	3L_11134974_INS [dm3] 3L_11141874_INS [dm6]	T	TAT	2.596e^-4	1	INTRON CG32082
3R	23834871	3R_23834871_SNP [dm3] 3R_28009149_SNP [dm6]	T	C	2.596e^-4	1	INTERGENIC
2L	11845065	2L_11845065_SNP [dm3] 2L_11845065_SNP [dm6]	C	G	2.611e^-4	1	INTRON Pde1c
2R	17838931	2R_17838931_SNP [dm3] 2R_21951426_SNP [dm6]	C	T	2.617e^-4	1	UPSTREAM CG13488 INTERGENIC
X	18237190	X_18237190_SNP [dm3] X_18343157_SNP [dm6]	C	T	2.620e^-4	1	INTRON CG6123	TF binding site mE1_TFBS_chinmo
2R	10943729	2R_10943729_SNP [dm3] 2R_15056224_SNP [dm6]	C	A	2.627e^-4	1	SYNONYMOUS_CODING CG33467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1234218	X_1234218_SNP [dm3] X_1340185_SNP [dm6]	T	A	2.629e^-4	1	INTRON CG11409
3L	16934542	3L_16934542_SNP [dm3] 3L_16941442_SNP [dm6]	A	C	2.653e^-4	1	INTRON Cpr73D
X	6314087	X_6314087_SNP [dm3] X_6420054_SNP [dm6]	C	T	2.653e^-4	1	UPSTREAM CG33668 INTERGENIC
2R	14891152	2R_14891152_SNP [dm3] 2R_19003647_SNP [dm6]	A	C	2.653e^-4	1	DOWNSTREAM tn INTRON tn
3L	16938433	3L_16938433_SNP [dm3] 3L_16945333_SNP [dm6]	C	T	2.653e^-4	1	INTRON Obp73a
2R	8631386	2R_8631386_SNP [dm3] 2R_12743881_SNP [dm6]	T	G	2.654e^-4	1	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3277244	3L_3277244_SNP [dm3] 3L_3277244_SNP [dm6]	A	G	2.662e^-4	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	25918230	3R_25918230_SNP [dm3] 3R_30092508_SNP [dm6]	C	T	2.677e^-4	1	INTRON sima
3L	13082275	3L_13082275_SNP [dm3] 3L_13089175_SNP [dm6]	C	T	2.683e^-4	1	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7060915	2R_7060915_SNP [dm3] 2R_11173410_SNP [dm6]	T	A	2.685e^-4	1	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	14774137	2L_14774137_SNP [dm3] 2L_14774137_SNP [dm6]	A	T	2.698e^-4	1	SYNONYMOUS_CODING CG4650 UTR_3_PRIME CG4650
X	1229636	X_1229636_SNP [dm3] X_1335603_SNP [dm6]	T	A	2.704e^-4	1	INTRON CG11409
X	19513630	X_19513630_SNP [dm3] X_19619597_SNP [dm6]	A	G	2.710e^-4	1	SYNONYMOUS_CODING CG14221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11709455	2L_11709455_SNP [dm3] 2L_11709455_SNP [dm6]	T	G	2.719e^-4	1	INTERGENIC
3R	12951491	3R_12951491_DEL [dm3] 3R_17125769_DEL [dm6]	AATTCACCA	A	2.729e^-4	1	UPSTREAM cher DOWNSTREAM CG45079 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	13871808	X_13871808_SNP [dm3] X_13977775_SNP [dm6]	A	T	2.737e^-4	1	INTRON mamo
3L	24288083	3L_24288083_DEL [dm3] 3L_24294983_DEL [dm6]	TG	T	2.743e^-4	1	INTRON Snap25
X	1221320	X_1221320_SNP [dm3] X_1327287_SNP [dm6]	G	A	2.746e^-4	1	INTRON fs_1_N
3R	27431292	3R_27431292_SNP [dm3] 3R_31605570_SNP [dm6]	G	T	2.755e^-4	1	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	13676941	3R_13676941_SNP [dm3] 3R_17851219_SNP [dm6]	G	A	2.765e^-4	1	INTRON tinc
2L	12309916	2L_12309916_SNP [dm3] 2L_12309916_SNP [dm6]	A	C	2.769e^-4	1	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3775329	2L_3775329_SNP [dm3] 2L_3775329_SNP [dm6]	C	A	2.800e^-4	1	INTRON bowl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	9703666	3R_9703666_SNP [dm3] 3R_13877944_SNP [dm6]	C	T	2.801e^-4	1	UPSTREAM E5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22003939	3R_22003939_SNP [dm3] 3R_26178217_SNP [dm6]	G	T	2.814e^-4	1	INTRON CG31323
3R	16432725	3R_16432725_SNP [dm3] 3R_20607003_SNP [dm6]	T	C	2.824e^-4	1	SYNONYMOUS_CODING bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12894078	3R_12894078_SNP [dm3] 3R_17068356_SNP [dm6]	A	T	2.835e^-4	1	INTRON Dad
2R	20207685	2R_20207685_SNP [dm3] 2R_24320162_SNP [dm6]	T	C	2.836e^-4	1	INTERGENIC
2L	12489309	2L_12489309_SNP [dm3] 2L_12489309_SNP [dm6]	T	A	2.844e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12305017	2L_12305017_SNP [dm3] 2L_12305017_SNP [dm6]	G	A	2.846e^-4	1	INTRON aret
3L	10547701	3L_10547701_SNP [dm3] 3L_10554601_SNP [dm6]	G	T	2.852e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16220081	2L_16220081_SNP [dm3] 2L_16220081_SNP [dm6]	G	A	2.857e^-4	1	INTERGENIC
X	19651737	X_19651737_SNP [dm3] X_19757704_SNP [dm6]	G	A	2.870e^-4	1	SYNONYMOUS_CODING Pmp70	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11156057	3L_11156057_SNP [dm3] 3L_11162957_SNP [dm6]	G	T	2.871e^-4	1	UTR_3_PRIME CG32082 DOWNSTREAM CR43989 INTRON CG32082	TF binding site mE1_TFBS_cad
3L	14180203	3L_14180203_SNP [dm3] 3L_14187103_SNP [dm6]	G	C	2.873e^-4	1	SYNONYMOUS_CODING nan	TF binding site mE1_TFBS_cad
3L	8574354	3L_8574354_SNP [dm3] 3L_8581254_SNP [dm6]	T	A	2.875e^-4	1	INTRON CG43078
3L	15002882	3L_15002882_SNP [dm3] 3L_15009782_SNP [dm6]	G	T	2.887e^-4	1	INTRON Reck
3R	8725791	3R_8725791_SNP [dm3] 3R_12900069_SNP [dm6]	A	G	2.901e^-4	1	INTERGENIC
2L	10699099	2L_10699099_SNP [dm3] 2L_10699099_SNP [dm6]	A	G	2.901e^-4	1	DOWNSTREAM CR44181 & 1 other INTERGENIC
2R	582433	2R_582433_SNP [dm3] 2R_4694928_SNP [dm6]	T	A	2.907e^-4	1	INTRON Nipped-B
2L	8268065	2L_8268065_SNP [dm3] 2L_8268065_SNP [dm6]	G	T	2.908e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_D
3L	13632461	3L_13632461_SNP [dm3] 3L_13639361_SNP [dm6]	T	A	2.909e^-4	1	INTRON bru-3
3L	8574339	3L_8574339_DEL [dm3] 3L_8581239_DEL [dm6]	TTAG	T	2.918e^-4	1	INTRON CG43078
2R	19916071	2R_19916071_SNP [dm3] 2R_24028548_SNP [dm6]	A	T	2.933e^-4	1	UPSTREAM CG3163 INTRON HSPC300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19180493	3L_19180493_SNP [dm3] 3L_19187393_SNP [dm6]	A	C	2.937e^-4	1	INTRON fz2
3L	19506943	3L_19506943_SNP [dm3] 3L_19513843_SNP [dm6]	C	T	2.939e^-4	1	INTERGENIC
3L	908421	3L_908421_SNP [dm3] 3L_908421_SNP [dm6]	A	C	2.941e^-4	1	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	13103928	3R_13103928_SNP [dm3] 3R_17278206_SNP [dm6]	A	C	2.946e^-4	1	INTERGENIC
3L	18195691	3L_18195691_SNP [dm3] 3L_18202591_SNP [dm6]	A	T	2.955e^-4	1	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	14772334	2L_14772334_DEL [dm3] 2L_14772334_DEL [dm6]	TA	T	2.961e^-4	1	INTERGENIC
3L	5930027	3L_5930027_SNP [dm3] 3L_5936927_SNP [dm6]	G	A	2.964e^-4	1	INTRON CG33993
3L	12959181	3L_12959181_SNP [dm3] 3L_12966081_SNP [dm6]	C	A	2.969e^-4	1	UPSTREAM Or69a INTRON Or69a
X	7874115	X_7874115_SNP [dm3] X_7980082_SNP [dm6]	C	A	2.978e^-4	1	INTRON sn
2R	11651100	2R_11651100_SNP [dm3] 2R_15763595_SNP [dm6]	T	C	2.986e^-4	1	SPLICE_SITE_REGION Zasp52 INTRON Zasp52
2L	1882229	2L_1882229_SNP [dm3] 2L_1882229_SNP [dm6]	C	A	3.002e^-4	1	UTR_3_PRIME CG15358 UPSTREAM CG31663
X	5033111	X_5033111_MNP [dm3] X_5139078_MNP [dm6]	GCA	ATT	3.011e^-4	1	INTRON rg & 1 other
3L	5928754	3L_5928754_SNP [dm3] 3L_5935654_SNP [dm6]	C	T	3.017e^-4	1	UPSTREAM CG33993 INTRON CG33993
3R	25928934	3R_25928934_SNP [dm3] 3R_30103212_SNP [dm6]	T	A	3.026e^-4	1	INTRON sima	TF binding site mE1_TFBS_cad
2R	12787080	2R_12787080_SNP [dm3] 2R_16899575_SNP [dm6]	A	T	3.028e^-4	1	INTRON inaC
2L	4146289	2L_4146289_SNP [dm3] 2L_4146289_SNP [dm6]	C	T	3.047e^-4	1	INTERGENIC
2R	10943728	2R_10943728_SNP [dm3] 2R_15056223_SNP [dm6]	C	A	3.048e^-4	1	NON_SYNONYMOUS_CODING CG33467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10531586	2L_10531586_SNP [dm3] 2L_10531586_SNP [dm6]	T	C	3.053e^-4	1	UTR_3_PRIME Lip4 UPSTREAM CG18301 DOWNSTREAM Lip4
3L	2155319	3L_2155319_SNP [dm3] 3L_2155319_SNP [dm6]	C	T	3.073e^-4	1	SYNONYMOUS_CODING CG15822 INTRON CG15822
2R	16686688	2R_16686688_SNP [dm3] 2R_20799183_SNP [dm6]	C	T	3.092e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7855189	3R_7855189_SNP [dm3] 3R_12029467_SNP [dm6]	A	C	3.098e^-4	1	SYNONYMOUS_CODING CG42504 UTR_5_PRIME CG42505 UTR_3_PRIME CG31358 INTRON CG31358
3R	24289966	3R_24289966_SNP [dm3] 3R_28464244_SNP [dm6]	C	A	3.104e^-4	1	INTRON beat-VI
2R	19896591	2R_19896591_SNP [dm3] 2R_24009068_SNP [dm6]	A	G	3.109e^-4	1	SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad
2R	12350864	2R_12350864_SNP [dm3] 2R_16463359_SNP [dm6]	T	A	3.113e^-4	1	INTERGENIC
X	18231121	X_18231121_SNP [dm3] X_18337088_SNP [dm6]	T	G	3.135e^-4	1	INTRON CG6123
X	4985324	X_4985324_SNP [dm3] X_5091291_SNP [dm6]	C	T	3.136e^-4	1	INTRON rg & 1 other
3R	17212883	3R_17212883_SNP [dm3] 3R_21387161_SNP [dm6]	A	T	3.136e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13617019	3R_13617019_SNP [dm3] 3R_17791297_SNP [dm6]	C	A	3.143e^-4	1	INTRON CG43102	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	16817118	3L_16817118_SNP [dm3] 3L_16824018_SNP [dm6]	G	C	3.151e^-4	1	INTRON CG13024
3L	18625831	3L_18625831_SNP [dm3] 3L_18632731_SNP [dm6]	T	A	3.155e^-4	1	INTRON MYPT-75D
3R	8763715	3R_8763715_SNP [dm3] 3R_12937993_SNP [dm6]	T	A	3.165e^-4	1	INTERGENIC
X	1232785	X_1232785_SNP [dm3] X_1338752_SNP [dm6]	A	T	3.166e^-4	1	UPSTREAM CG11409 INTRON CG11409	TF binding site mE1_TFBS_HSA
3R	24290014	3R_24290014_SNP [dm3] 3R_28464292_SNP [dm6]	A	C	3.169e^-4	1	INTRON beat-VI
2L	3264726	2L_3264726_SNP [dm3] 2L_3264726_SNP [dm6]	T	C	3.193e^-4	1	EXON CR45706
3R	13839428	3R_13839428_SNP [dm3] 3R_18013706_SNP [dm6]	C	A	3.197e^-4	1	UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad
2L	17062786	2L_17062786_SNP [dm3] 2L_17062786_SNP [dm6]	G	A	3.201e^-4	1	INTERGENIC
2L	5796025	2L_5796025_SNP [dm3] 2L_5796025_SNP [dm6]	A	C	3.202e^-4	1	INTRON CG9171
X	4554386	X_4554386_SNP [dm3] X_4660353_SNP [dm6]	G	C	3.212e^-4	1	SYNONYMOUS_CODING CG3009	TF binding site mE1_TFBS_chinmo
3L	17529817	3L_17529817_SNP [dm3] 3L_17536717_SNP [dm6]	C	T	3.230e^-4	1	INTRON Nedd4
3R	7665102	3R_7665102_SNP [dm3] 3R_11839380_SNP [dm6]	C	T	3.230e^-4	1	INTRON CG6959
3L	17172340	3L_17172340_SNP [dm3] 3L_17179240_SNP [dm6]	G	A	3.230e^-4	1	INTRON Rbp6
3R	25920552	3R_25920552_SNP [dm3] 3R_30094830_SNP [dm6]	C	T	3.236e^-4	1	INTRON sima	TF binding site mE1_TFBS_inv
3L	7863864	3L_7863864_SNP [dm3] 3L_7870764_SNP [dm6]	G	A	3.237e^-4	1	INTRON CG32365
3R	19097335	3R_19097335_SNP [dm3] 3R_23271613_SNP [dm6]	T	A	3.239e^-4	1	INTRON orb
2R	1635505	2R_1635505_SNP [dm3] 2R_5748000_SNP [dm6]	T	A	3.258e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8709041	3L_8709041_SNP [dm3] 3L_8715941_SNP [dm6]	A	C	3.262e^-4	1	INTERGENIC
2L	18919602	2L_18919602_DEL [dm3] 2L_18919602_DEL [dm6]	TT	T	3.267e^-4	1	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16493065	3R_16493065_SNP [dm3] 3R_20667343_SNP [dm6]	C	G	3.269e^-4	1	INTERGENIC
3L	10524672	3L_10524672_SNP [dm3] 3L_10531572_SNP [dm6]	T	A	3.272e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3R	16253504	3R_16253504_SNP [dm3] 3R_20427782_SNP [dm6]	A	G	3.296e^-4	1	INTRON Gfrl
3L	14549176	3L_14549176_SNP [dm3] 3L_14556076_SNP [dm6]	A	G	3.313e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11640789	3R_11640789_SNP [dm3] 3R_15815067_SNP [dm6]	G	T	3.321e^-4	1	INTRON alpha-Man-IIb
3R	8850389	3R_8850389_SNP [dm3] 3R_13024667_SNP [dm6]	A	T	3.322e^-4	1	DOWNSTREAM CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4370379	2L_4370379_SNP [dm3] 2L_4370379_SNP [dm6]	G	A	3.336e^-4	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13305598	3R_13305598_SNP [dm3] 3R_17479876_SNP [dm6]	G	T	3.337e^-4	1	SYNONYMOUS_CODING Dscam3
X	15561931	X_15561931_INS [dm3] X_15667898_INS [dm6]	T	TT	3.342e^-4	1	UTR_3_PRIME CG15646	TF binding site mE1_TFBS_cnc
3R	25271838	3R_25271838_SNP [dm3] 3R_29446116_SNP [dm6]	A	T	3.347e^-4	1	INTRON Ptp99A
2R	12761338	2R_12761338_SNP [dm3] 2R_16873833_SNP [dm6]	A	T	3.347e^-4	1	SYNONYMOUS_CODING CG6435 DOWNSTREAM CG6421 & 2 others
X	12622989	X_12622989_SNP [dm3] X_12728956_SNP [dm6]	T	A	3.348e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9840474	2L_9840474_SNP [dm3] 2L_9840474_SNP [dm6]	C	T	3.350e^-4	1	INTRON nAChRalpha6
3L	7686078	3L_7686078_SNP [dm3] 3L_7692978_SNP [dm6]	T	G	3.350e^-4	1	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15428763	2L_15428763_SNP [dm3] 2L_15428763_SNP [dm6]	G	A	3.354e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13521495	3R_13521495_SNP [dm3] 3R_17695773_SNP [dm6]	G	T	3.367e^-4	1	INTRON osa
2L	15344722	2L_15344722_SNP [dm3] 2L_15344722_SNP [dm6]	A	T	3.374e^-4	1	INTERGENIC
2L	2925497	2L_2925497_SNP [dm3] 2L_2925497_SNP [dm6]	G	A	3.397e^-4	1	INTRON lilli
2L	1672911	2L_1672911_SNP [dm3] 2L_1672911_SNP [dm6]	C	A	3.399e^-4	1	INTRON chinmo
X	3481063	X_3481063_SNP [dm3] X_3587030_SNP [dm6]	A	T	3.401e^-4	1	INTRON AstA-R1
2L	6115235	2L_6115235_SNP [dm3] 2L_6115235_SNP [dm6]	A	T	3.425e^-4	1	INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	503351	2R_503351_SNP [dm3] 2R_4615846_SNP [dm6]	C	G	3.428e^-4	1	INTERGENIC	transposable element FlyBase
3L	3664333	3L_3664333_SNP [dm3] 3L_3664333_SNP [dm6]	G	T	3.430e^-4	1	INTERGENIC
3R	21511115	3R_21511115_SNP [dm3] 3R_25685393_SNP [dm6]	T	A	3.441e^-4	1	STOP_GAINED CLS UPSTREAM RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16049620	2L_16049620_SNP [dm3] 2L_16049620_SNP [dm6]	A	T	3.442e^-4	1	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18198495	3L_18198495_SNP [dm3] 3L_18205395_SNP [dm6]	T	C	3.445e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7331047	2L_7331047_SNP [dm3] 2L_7331047_SNP [dm6]	G	T	3.452e^-4	1	INTERGENIC
2L	1124668	2L_1124668_SNP [dm3] 2L_1124668_SNP [dm6]	C	T	3.454e^-4	1	INTRON Pino	TF binding site mE1_TFBS_HSA
3R	16962910	3R_16962910_SNP [dm3] 3R_21137188_SNP [dm6]	G	A	3.461e^-4	1	SYNONYMOUS_CODING Ubpy	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14128239	2R_14128239_SNP [dm3] 2R_18240734_SNP [dm6]	C	T	3.464e^-4	1	INTERGENIC
2L	7780423	2L_7780423_SNP [dm3] 2L_7780423_SNP [dm6]	T	C	3.464e^-4	1	SYNONYMOUS_CODING Uro
X	4929297	X_4929297_SNP [dm3] X_5035264_SNP [dm6]	A	G	3.465e^-4	1	INTRON CR44833
3L	8900766	3L_8900766_SNP [dm3] 3L_8907666_SNP [dm6]	T	A	3.468e^-4	1	SPLICE_SITE_REGION mfr INTRON mfr
2R	6457314	2R_6457314_SNP [dm3] 2R_10569809_SNP [dm6]	T	C	3.468e^-4	1	SPLICE_SITE_REGION psq UTR_5_PRIME psq UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16665799	3L_16665799_SNP [dm3] 3L_16672699_SNP [dm6]	T	C	3.476e^-4	1	INTRON zetaCOP
3R	25014563	3R_25014563_INS [dm3] 3R_29188841_INS [dm6]	G	GG	3.477e^-4	1	INTRON CG14509
2L	10491787	2L_10491787_SNP [dm3] 2L_10491787_SNP [dm6]	C	G	3.478e^-4	1	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
3L	2587599	3L_2587599_SNP [dm3] 3L_2587599_SNP [dm6]	T	G	3.480e^-4	1	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	2587565	3L_2587565_SNP [dm3] 3L_2587565_SNP [dm6]	A	G	3.493e^-4	1	INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	10586747	X_10586747_SNP [dm3] X_10692714_SNP [dm6]	A	G	3.494e^-4	1	INTRON X11Lbeta
2R	16121877	2R_16121877_SNP [dm3] 2R_20234372_SNP [dm6]	T	C	3.501e^-4	1	SPLICE_SITE_REGION CG11044 SYNONYMOUS_CODING CG11044 UPSTREAM CG44624
3R	8202734	3R_8202734_SNP [dm3] 3R_12377012_SNP [dm6]	G	T	3.515e^-4	1	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
2R	9971635	2R_9971635_DEL [dm3] 2R_14084130_DEL [dm6]	ACTGCAA	A	3.525e^-4	1	INTRON Prosap
3L	5929292	3L_5929292_SNP [dm3] 3L_5936192_SNP [dm6]	T	C	3.533e^-4	1	UPSTREAM CG33993 INTRON CG33993	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	5273885	3L_5273885_SNP [dm3] 3L_5280785_SNP [dm6]	C	G	3.535e^-4	1	INTERGENIC
3L	17578789	3L_17578789_DEL [dm3] 3L_17585689_DEL [dm6]	TT	T	3.536e^-4	1	INTRON Eip74EF	TF binding site mE1_TFBS_inv
X	20208170	X_20208170_SNP [dm3] X_20337143_SNP [dm6]	G	A	3.547e^-4	1	INTERGENIC
2L	16099717	2L_16099717_SNP [dm3] 2L_16099717_SNP [dm6]	A	G	3.554e^-4	1	INTERGENIC
3R	14184358	3R_14184358_SNP [dm3] 3R_18358636_SNP [dm6]	A	G	3.567e^-4	1	INTRON CG15803
2R	10993333	2R_10993333_SNP [dm3] 2R_15105828_SNP [dm6]	C	T	3.574e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16084477	2R_16084477_SNP [dm3] 2R_20196972_SNP [dm6]	A	G	3.582e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8574333	3L_8574333_INS [dm3] 3L_8581233_INS [dm6]	A	TT	3.584e^-4	1	INTRON CG43078
3L	9550550	3L_9550550_SNP [dm3] 3L_9557450_SNP [dm6]	C	T	3.601e^-4	1	INTRON CG42673
2R	12350826	2R_12350826_SNP [dm3] 2R_16463321_SNP [dm6]	C	A	3.601e^-4	1	INTERGENIC
2L	12302093	2L_12302093_SNP [dm3] 2L_12302093_SNP [dm6]	G	A	3.607e^-4	1	INTRON aret
2L	3156657	2L_3156657_SNP [dm3] 2L_3156657_SNP [dm6]	G	T	3.608e^-4	1	INTRON Mad
3L	2943152	3L_2943152_SNP [dm3] 3L_2943152_SNP [dm6]	A	T	3.610e^-4	1	INTRON Shab
2R	18334128	2R_18334128_SNP [dm3] 2R_22446623_SNP [dm6]	G	A	3.611e^-4	1	INTERGENIC
2R	16347030	2R_16347030_SNP [dm3] 2R_20459525_SNP [dm6]	C	T	3.613e^-4	1	SYNONYMOUS_CODING CG12484
X	8130741	X_8130741_SNP [dm3] X_8236708_SNP [dm6]	A	G	3.616e^-4	1	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21263824	2L_21263824_DEL [dm3] 2L_21263824_DEL [dm6]	CCAAA	C	3.616e^-4	1	UPSTREAM mir-4974 INTRON CG8671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	2828448	2R_2828448_SNP [dm3] 2R_6940943_SNP [dm6]	G	A	3.620e^-4	1	INTRON mim
3R	19253295	3R_19253295_SNP [dm3] 3R_23427573_SNP [dm6]	T	C	3.622e^-4	1	INTRON CG4374
2L	16049634	2L_16049634_SNP [dm3] 2L_16049634_SNP [dm6]	T	A	3.629e^-4	1	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9550554	3L_9550554_SNP [dm3] 3L_9557454_SNP [dm6]	A	G	3.635e^-4	1	INTRON CG42673
3R	13322747	3R_13322747_SNP [dm3] 3R_17497025_SNP [dm6]	A	G	3.650e^-4	1	INTRON Dscam3
2L	12288693	2L_12288693_SNP [dm3] 2L_12288693_SNP [dm6]	C	A	3.657e^-4	1	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	14774140	2L_14774140_SNP [dm3] 2L_14774140_SNP [dm6]	A	G	3.664e^-4	1	SYNONYMOUS_CODING CG4650 UTR_3_PRIME CG4650
3R	10899429	3R_10899429_SNP [dm3] 3R_15073707_SNP [dm6]	G	C	3.668e^-4	1	INTRON dpr9
3L	8574335	3L_8574335_SNP [dm3] 3L_8581235_SNP [dm6]	A	C	3.676e^-4	1	INTRON CG43078
3L	3277091	3L_3277091_SNP [dm3] 3L_3277091_SNP [dm6]	C	T	3.677e^-4	1	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10656426	3L_10656426_SNP [dm3] 3L_10663326_SNP [dm6]	C	A	3.693e^-4	1	UPSTREAM CG32068 DOWNSTREAM CG8003 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
X	14768860	X_14768860_SNP [dm3] X_14874827_SNP [dm6]	G	T	3.706e^-4	1	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	14135297	2R_14135297_SNP [dm3] 2R_18247792_SNP [dm6]	T	A	3.719e^-4	1	INTERGENIC
3L	16665517	3L_16665517_SNP [dm3] 3L_16672417_SNP [dm6]	T	G	3.720e^-4	1	UTR_3_PRIME zetaCOP INTRON zetaCOP
2R	10994806	2R_10994806_SNP [dm3] 2R_15107301_SNP [dm6]	T	C	3.724e^-4	1	INTERGENIC
3L	830406	3L_830406_SNP [dm3] 3L_830406_SNP [dm6]	A	G	3.724e^-4	1	UPSTREAM CR45184 & 1 other DOWNSTREAM snoRNA:Me28S-A771 INTRON CG13900	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	830414	3L_830414_SNP [dm3] 3L_830414_SNP [dm6]	C	T	3.724e^-4	1	UPSTREAM CR45184 & 1 other DOWNSTREAM snoRNA:Me28S-A771 INTRON CG13900	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20814192	3R_20814192_DEL [dm3] 3R_24988470_DEL [dm6]	AA	A	3.729e^-4	1	INTRON tnc
2R	19527597	2R_19527597_SNP [dm3] 2R_23640074_SNP [dm6]	A	G	3.756e^-4	1	UPSTREAM CR45153 INTRON retn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7107336	2L_7107336_SNP [dm3] 2L_7107336_SNP [dm6]	A	G	3.756e^-4	1	SYNONYMOUS_CODING Pvf3
3L	908490	3L_908490_SNP [dm3] 3L_908490_SNP [dm6]	T	C	3.757e^-4	1	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	16433016	3R_16433016_SNP [dm3] 3R_20607294_SNP [dm6]	G	A	3.773e^-4	1	SYNONYMOUS_CODING bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7015096	2L_7015096_SNP [dm3] 2L_7015096_SNP [dm6]	C	T	3.776e^-4	1	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13683704	2L_13683704_SNP [dm3] 2L_13683704_SNP [dm6]	A	G	3.776e^-4	1	INTRON CG31814
2R	13531569	2R_13531569_SNP [dm3] 2R_17644064_SNP [dm6]	C	T	3.783e^-4	1	INTERGENIC
3L	8574357	3L_8574357_SNP [dm3] 3L_8581257_SNP [dm6]	G	T	3.796e^-4	1	INTRON CG43078
3L	17575865	3L_17575865_SNP [dm3] 3L_17582765_SNP [dm6]	T	C	3.802e^-4	1	INTRON Eip74EF
2L	10939599	2L_10939599_SNP [dm3] 2L_10939599_SNP [dm6]	G	T	3.804e^-4	1	INTRON dpr2
2L	18824766	2L_18824766_SNP [dm3] 2L_18824766_SNP [dm6]	C	T	3.804e^-4	1	INTRON CG17323	TF binding site mE1_TFBS_cad
2R	16242535	2R_16242535_MNP [dm3] 2R_20355030_MNP [dm6]	CCA	ATT	3.805e^-4	1	NON_SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad
3R	25914919	3R_25914919_DEL [dm3] 3R_30089197_DEL [dm6]	AA	A	3.810e^-4	1	INTRON sima
3R	9077339	3R_9077339_SNP [dm3] 3R_13251617_SNP [dm6]	C	G	3.821e^-4	1	INTRON Ace
3L	16919107	3L_16919107_SNP [dm3] 3L_16926007_SNP [dm6]	G	A	3.823e^-4	1	INTRON CG13023
X	15311660	X_15311660_SNP [dm3] X_15417627_SNP [dm6]	G	A	3.829e^-4	1	INTRON Cngl
3R	18477080	3R_18477080_SNP [dm3] 3R_22651358_SNP [dm6]	A	G	3.830e^-4	1	INTRON CG45058
3L	8574347	3L_8574347_SNP [dm3] 3L_8581247_SNP [dm6]	T	C	3.831e^-4	1	INTRON CG43078
2R	19905814	2R_19905814_SNP [dm3] 2R_24018291_SNP [dm6]	G	A	3.836e^-4	1	SYNONYMOUS_CODING CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19905823	2R_19905823_SNP [dm3] 2R_24018300_SNP [dm6]	T	C	3.836e^-4	1	SYNONYMOUS_CODING CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15930247	2R_15930247_SNP [dm3] 2R_20042742_SNP [dm6]	C	G	3.840e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	18231413	X_18231413_SNP [dm3] X_18337380_SNP [dm6]	T	C	3.840e^-4	1	INTRON CG6123
X	22038660	X_22038660_SNP [dm3] X_22636824_SNP [dm6]	T	A	3.843e^-4	1	INTERGENIC
X	18231237	X_18231237_SNP [dm3] X_18337204_SNP [dm6]	C	T	3.846e^-4	1	INTRON CG6123
3L	17550293	3L_17550293_DEL [dm3] 3L_17557193_DEL [dm6]	CC	T	3.848e^-4	1	UTR_5_PRIME CycT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24068034	3R_24068034_SNP [dm3] 3R_28242312_SNP [dm6]	A	G	3.851e^-4	1	INTERGENIC
3R	13314434	3R_13314434_SNP [dm3] 3R_17488712_SNP [dm6]	A	G	3.852e^-4	1	INTRON Dscam3
2L	16473680	2L_16473680_SNP [dm3] 2L_16473680_SNP [dm6]	C	A	3.853e^-4	1	INTRON dac
2R	17969323	2R_17969323_SNP [dm3] 2R_22081818_SNP [dm6]	T	C	3.865e^-4	1	SYNONYMOUS_CODING Synj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16153103	2L_16153103_SNP [dm3] 2L_16153103_SNP [dm6]	G	T	3.872e^-4	1	INTERGENIC	TF binding site mE1_TFBS_run
X	15327653	X_15327653_SNP [dm3] X_15433620_SNP [dm6]	C	A	3.877e^-4	1	INTRON Cngl	transposable element FlyBase
X	1238172	X_1238172_SNP [dm3] X_1344139_SNP [dm6]	A	C	3.882e^-4	1	UTR_3_PRIME CG11412 DOWNSTREAM CG11418
2R	18969347	2R_18969347_SNP [dm3] 2R_23081824_SNP [dm6]	G	T	3.886e^-4	1	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	16242837	2R_16242837_SNP [dm3] 2R_20355332_SNP [dm6]	G	T	3.886e^-4	1	UPSTREAM CG11192 INTERGENIC
X	4929126	X_4929126_SNP [dm3] X_5035093_SNP [dm6]	C	T	3.887e^-4	1	INTRON CR44833
X	1228778	X_1228778_SNP [dm3] X_1334745_SNP [dm6]	C	T	3.891e^-4	1	INTRON CG11409
2L	18919607	2L_18919607_SNP [dm3] 2L_18919607_SNP [dm6]	A	T	3.907e^-4	1	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919608	2L_18919608_SNP [dm3] 2L_18919608_SNP [dm6]	C	G	3.907e^-4	1	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18919610	2L_18919610_SNP [dm3] 2L_18919610_SNP [dm6]	G	A	3.907e^-4	1	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10466724	X_10466724_SNP [dm3] X_10572691_SNP [dm6]	T	A	3.919e^-4	1	INTRON spri
3L	7480005	3L_7480005_SNP [dm3] 3L_7486905_SNP [dm6]	T	C	3.922e^-4	1	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15616322	3L_15616322_SNP [dm3] 3L_15623222_SNP [dm6]	A	G	3.924e^-4	1	UTR_3_PRIME CG7372 INTRON comm3
2L	8999210	2L_8999210_SNP [dm3] 2L_8999210_SNP [dm6]	C	T	3.925e^-4	1	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad
2R	5588934	2R_5588934_SNP [dm3] 2R_9701429_SNP [dm6]	G	A	3.928e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8472818	3R_8472818_SNP [dm3] 3R_12647096_SNP [dm6]	A	C	3.939e^-4	1	UPSTREAM Dtg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7512930	2R_7512930_SNP [dm3] 2R_11625425_SNP [dm6]	G	T	3.941e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14307370	3R_14307370_SNP [dm3] 3R_18481648_SNP [dm6]	T	A	3.945e^-4	1	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl
3R	27771007	3R_27771007_INS [dm3] 3R_31945285_INS [dm6]	T	TTATCAAGT	3.950e^-4	1	INTRON heph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1225525	X_1225525_SNP [dm3] X_1331492_SNP [dm6]	T	G	3.952e^-4	1	NON_SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
2L	1724171	2L_1724171_SNP [dm3] 2L_1724171_SNP [dm6]	C	T	3.955e^-4	1	UTR_5_PRIME Rim2 DOWNSTREAM Eno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	5589597	2R_5589597_SNP [dm3] 2R_9702092_SNP [dm6]	A	T	3.957e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4031122	2R_4031122_SNP [dm3] 2R_8143617_SNP [dm6]	T	C	3.958e^-4	1	INTRON Lpin	TF binding site mE1_TFBS_HSA
X	1213308	X_1213308_SNP [dm3] X_1319275_SNP [dm6]	T	A	3.968e^-4	1	INTRON DAAM
3L	5179667	3L_5179667_DEL [dm3] 3L_5186567_DEL [dm6]	AG	A	3.968e^-4	1	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7382453	2R_7382453_SNP [dm3] 2R_11494948_SNP [dm6]	C	T	3.984e^-4	1	INTRON inv
2L	15091274	2L_15091274_DEL [dm3] 2L_15091274_DEL [dm6]	TAGCTCTT	T	3.985e^-4	1	INTRON CG15270
2L	15946844	2L_15946844_SNP [dm3] 2L_15946844_SNP [dm6]	T	A	3.989e^-4	1	INTRON beat-Ib
2L	22035825	2L_22035825_SNP [dm3] 2L_22035825_SNP [dm6]	C	A	3.990e^-4	1	INTERGENIC
X	18231511	X_18231511_DEL [dm3] X_18337478_DEL [dm6]	TCAAACTAAGAAGCAGTCAT...	T	4.035e^-4	1	INTRON CG6123
3R	13314423	3R_13314423_SNP [dm3] 3R_17488701_SNP [dm6]	C	T	4.046e^-4	1	INTRON Dscam3
3L	6920219	3L_6920219_SNP [dm3] 3L_6927119_SNP [dm6]	G	A	4.047e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	4155431	3L_4155431_SNP [dm3] 3L_4155431_SNP [dm6]	G	A	4.067e^-4	1	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14304016	2R_14304016_SNP [dm3] 2R_18416511_SNP [dm6]	C	A	4.069e^-4	1	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	740590	2R_740590_SNP [dm3] 2R_4853085_SNP [dm6]	C	T	4.072e^-4	1	INTERGENIC
3L	18789584	3L_18789584_SNP [dm3] 3L_18796484_SNP [dm6]	A	C	4.073e^-4	1	INTRON ftz-f1
X	18755227	X_18755227_SNP [dm3] X_18861194_SNP [dm6]	T	C	4.077e^-4	1	UTR_3_PRIME CG32544 DOWNSTREAM CG7326
3R	23026160	3R_23026160_SNP [dm3] 3R_27200438_SNP [dm6]	G	T	4.083e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	7382464	2R_7382464_SNP [dm3] 2R_11494959_SNP [dm6]	G	T	4.089e^-4	1	INTRON inv
3R	18880842	3R_18880842_SNP [dm3] 3R_23055120_SNP [dm6]	C	A	4.100e^-4	1	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_twi
3R	25932755	3R_25932755_SNP [dm3] 3R_30107033_SNP [dm6]	A	T	4.101e^-4	1	INTRON sima
3R	19098687	3R_19098687_SNP [dm3] 3R_23272965_SNP [dm6]	G	A	4.118e^-4	1	INTRON orb
2R	3123179	2R_3123179_SNP [dm3] 2R_7235674_SNP [dm6]	T	C	4.129e^-4	1	UPSTREAM Or43a INTERGENIC
2R	10869319	2R_10869319_SNP [dm3] 2R_14981814_SNP [dm6]	C	T	4.137e^-4	1	SYNONYMOUS_CODING pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2851182	3L_2851182_SNP [dm3] 3L_2851182_SNP [dm6]	C	G	4.147e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	16938491	3L_16938491_SNP [dm3] 3L_16945391_SNP [dm6]	T	G	4.154e^-4	1	INTRON Obp73a
3L	3020046	3L_3020046_SNP [dm3] 3L_3020046_SNP [dm6]	G	A	4.157e^-4	1	INTERGENIC
3L	19587083	3L_19587083_SNP [dm3] 3L_19593983_SNP [dm6]	C	T	4.159e^-4	1	NON_SYNONYMOUS_CODING ash1
3R	26556982	3R_26556982_SNP [dm3] 3R_30731260_SNP [dm6]	T	A	4.161e^-4	1	UPSTREAM CG11313 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13809498	2L_13809498_SNP [dm3] 2L_13809498_SNP [dm6]	A	G	4.167e^-4	1	SYNONYMOUS_CODING CAH1 UTR_3_PRIME adat DOWNSTREAM adat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	16938493	3L_16938493_SNP [dm3] 3L_16945393_SNP [dm6]	T	G	4.168e^-4	1	INTRON Obp73a
X	4694549	X_4694549_SNP [dm3] X_4800516_SNP [dm6]	C	G	4.171e^-4	1	SYNONYMOUS_CODING CG2861 DOWNSTREAM CG2861
3L	16665789	3L_16665789_SNP [dm3] 3L_16672689_SNP [dm6]	A	T	4.173e^-4	1	INTRON zetaCOP
X	1223515	X_1223515_SNP [dm3] X_1329482_SNP [dm6]	T	C	4.191e^-4	1	DOWNSTREAM CG11409 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16370549	2R_16370549_SNP [dm3] 2R_20483044_SNP [dm6]	T	A	4.204e^-4	1	INTERGENIC
X	2245984	X_2245984_SNP [dm3] X_2351951_SNP [dm6]	A	T	4.210e^-4	1	INTRON ptr
2L	4103995	2L_4103995_SNP [dm3] 2L_4103995_SNP [dm6]	A	G	4.213e^-4	1	INTRON ed
3L	10811633	3L_10811633_DEL [dm3] 3L_10818533_DEL [dm6]	AA	A	4.213e^-4	1	INTERGENIC
3L	17367282	3L_17367282_SNP [dm3] 3L_17374182_SNP [dm6]	T	A	4.218e^-4	1	INTRON Cad74A	TF binding site mE1_TFBS_cad
3R	27439947	3R_27439947_SNP [dm3] 3R_31614225_SNP [dm6]	C	G	4.221e^-4	1	SPLICE_SITE_REGION Med INTRON Med	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18156868	3R_18156868_DEL [dm3] 3R_22331146_DEL [dm6]	TT	T	4.235e^-4	1	UPSTREAM CG13862 DOWNSTREAM CG7080 INTRON CG33721
3L	20523947	3L_20523947_SNP [dm3] 3L_20530847_SNP [dm6]	C	T	4.238e^-4	1	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2735462	3L_2735462_SNP [dm3] 3L_2735462_SNP [dm6]	A	G	4.253e^-4	1	UPSTREAM Mrtf INTRON Mrtf
X	12824355	X_12824355_SNP [dm3] X_12930322_SNP [dm6]	T	C	4.264e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8939641	X_8939641_SNP [dm3] X_9045608_SNP [dm6]	T	A	4.272e^-4	1	INTRON CR43836 & 1 other
2R	13105834	2R_13105834_INS [dm3] 2R_17218329_INS [dm6]	T	TCGCCT	4.284e^-4	1	INTRON mbl
3L	10526815	3L_10526815_SNP [dm3] 3L_10533715_SNP [dm6]	T	A	4.294e^-4	1	INTRON A2bp1
3R	25915467	3R_25915467_SNP [dm3] 3R_30089745_SNP [dm6]	A	G	4.297e^-4	1	INTRON sima	TF binding site mE1_TFBS_Trl
3R	19538897	3R_19538897_DEL [dm3] 3R_23713175_DEL [dm6]	CT	C	4.299e^-4	1	UTR_3_PRIME CG10300 INTRON nau
X	1147344	X_1147344_SNP [dm3] X_1253311_SNP [dm6]	C	T	4.301e^-4	1	INTRON Atf3
2L	15946848	2L_15946848_SNP [dm3] 2L_15946848_SNP [dm6]	T	A	4.308e^-4	1	INTRON beat-Ib
3L	3043249	3L_3043249_SNP [dm3] 3L_3043249_SNP [dm6]	T	C	4.309e^-4	1	DOWNSTREAM scramb2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	21651074	3R_21651074_SNP [dm3] 3R_25825352_SNP [dm6]	A	G	4.312e^-4	1	UPSTREAM CR44949 INTERGENIC
2R	16109920	2R_16109920_SNP [dm3] 2R_20222415_SNP [dm6]	C	A	4.316e^-4	1	UPSTREAM CR45423 INTERGENIC
3L	13208657	3L_13208657_SNP [dm3] 3L_13215557_SNP [dm6]	C	T	4.320e^-4	1	UPSTREAM CR43914 EXON CR45097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4270684	X_4270684_SNP [dm3] X_4376651_SNP [dm6]	A	G	4.321e^-4	1	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6190946	2R_6190946_SNP [dm3] 2R_10303441_SNP [dm6]	G	T	4.339e^-4	1	UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_Trl
3L	15715296	3L_15715296_SNP [dm3] 3L_15722196_SNP [dm6]	A	G	4.346e^-4	1	UTR_3_PRIME comm DOWNSTREAM comm
2L	9679097	2L_9679097_SNP [dm3] 2L_9679097_SNP [dm6]	T	C	4.352e^-4	1	INTERGENIC
2R	16646049	2R_16646049_SNP [dm3] 2R_20758544_SNP [dm6]	C	T	4.360e^-4	1	INTERGENIC
X	12824427	X_12824427_SNP [dm3] X_12930394_SNP [dm6]	A	C	4.366e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3481681	X_3481681_SNP [dm3] X_3587648_SNP [dm6]	C	G	4.366e^-4	1	INTRON AstA-R1
3R	11301554	3R_11301554_SNP [dm3] 3R_15475832_SNP [dm6]	C	T	4.368e^-4	1	UTR_5_PRIME AdamTS-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26823592	3R_26823592_SNP [dm3] 3R_30997870_SNP [dm6]	G	A	4.373e^-4	1	INTRON 5-HT7
3L	821277	3L_821277_SNP [dm3] 3L_821277_SNP [dm6]	T	C	4.378e^-4	1	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1279343	X_1279343_SNP [dm3] X_1385310_SNP [dm6]	A	T	4.378e^-4	1	UPSTREAM CG32813 INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10873784	2R_10873784_SNP [dm3] 2R_14986279_SNP [dm6]	G	A	4.382e^-4	1	INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4328104	3R_4328104_SNP [dm3] 3R_8502382_SNP [dm6]	C	T	4.401e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1279297	X_1279297_SNP [dm3] X_1385264_SNP [dm6]	T	C	4.403e^-4	1	UPSTREAM CG32813 INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	6354908	X_6354908_SNP [dm3] X_6460875_SNP [dm6]	T	C	4.413e^-4	1	INTRON CG42340
2L	21279116	2L_21279116_SNP [dm3] 2L_21279116_SNP [dm6]	G	A	4.418e^-4	1	INTRON CG8671
X	1266463	X_1266463_SNP [dm3] X_1372430_SNP [dm6]	C	T	4.422e^-4	1	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7480514	3L_7480514_SNP [dm3] 3L_7487414_SNP [dm6]	G	C	4.430e^-4	1	SYNONYMOUS_CODING mthl6
3L	3022275	3L_3022275_SNP [dm3] 3L_3022275_SNP [dm6]	T	A	4.444e^-4	1	INTERGENIC
2R	14134827	2R_14134827_SNP [dm3] 2R_18247322_SNP [dm6]	A	T	4.458e^-4	1	UPSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15071656	2L_15071656_SNP [dm3] 2L_15071656_SNP [dm6]	A	G	4.459e^-4	1	SYNONYMOUS_CODING vas INTRON vas
3L	17528529	3L_17528529_DEL [dm3] 3L_17535429_DEL [dm6]	TT	T	4.461e^-4	1	INTRON Nedd4	TF binding site mE1_TFBS_HSA
2L	8544453	2L_8544453_SNP [dm3] 2L_8544453_SNP [dm6]	T	A	4.465e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	21242124	2L_21242124_SNP [dm3] 2L_21242124_SNP [dm6]	G	A	4.474e^-4	1	INTRON Hr39	transposable element FlyBase
2R	12903692	2R_12903692_SNP [dm3] 2R_17016187_SNP [dm6]	C	A	4.476e^-4	1	UPSTREAM Ehbp1 DOWNSTREAM CG8963 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	7876064	2L_7876064_SNP [dm3] 2L_7876064_SNP [dm6]	C	T	4.486e^-4	1	SYNONYMOUS_CODING spz3
2L	18784335	2L_18784335_SNP [dm3] 2L_18784335_SNP [dm6]	G	T	4.487e^-4	1	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	9467275	3L_9467275_SNP [dm3] 3L_9474175_SNP [dm6]	T	G	4.490e^-4	1	INTRON CG44838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12903696	2R_12903696_SNP [dm3] 2R_17016191_SNP [dm6]	C	G	4.494e^-4	1	UPSTREAM Ehbp1 DOWNSTREAM CG8963 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	20845540	2L_20845540_SNP [dm3] 2L_20845540_SNP [dm6]	C	A	4.514e^-4	1	INTRON CG31676
2L	4656764	2L_4656764_SNP [dm3] 2L_4656764_SNP [dm6]	C	T	4.521e^-4	1	INTERGENIC
3L	15912055	3L_15912055_SNP [dm3] 3L_15918955_SNP [dm6]	G	T	4.535e^-4	1	INTRON sff
3R	24224491	3R_24224491_SNP [dm3] 3R_28398769_SNP [dm6]	T	C	4.538e^-4	1	INTERGENIC
2L	18906766	2L_18906766_SNP [dm3] 2L_18906766_SNP [dm6]	T	G	4.538e^-4	1	DOWNSTREAM CR44738 INTERGENIC
2R	16121904	2R_16121904_SNP [dm3] 2R_20234399_SNP [dm6]	C	A	4.540e^-4	1	UPSTREAM CG44624 INTRON CG11044
2R	18049302	2R_18049302_SNP [dm3] 2R_22161797_SNP [dm6]	T	A	4.540e^-4	1	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9048740	2R_9048740_SNP [dm3] 2R_13161235_SNP [dm6]	T	C	4.542e^-4	1	SYNONYMOUS_CODING Nrk	TF binding site mE1_TFBS_HSA
2R	2818413	2R_2818413_SNP [dm3] 2R_6930908_SNP [dm6]	G	T	4.548e^-4	1	INTRON mim
3L	16981398	3L_16981398_SNP [dm3] 3L_16988298_SNP [dm6]	G	A	4.550e^-4	1	INTRON Exn
3L	6748350	3L_6748350_SNP [dm3] 3L_6755250_SNP [dm6]	T	A	4.552e^-4	1	INTRON CG10103
3R	21395688	3R_21395688_SNP [dm3] 3R_25569966_SNP [dm6]	C	T	4.559e^-4	1	INTRON msi
3L	4444709	3L_4444709_SNP [dm3] 3L_4444709_SNP [dm6]	A	C	4.569e^-4	1	INTERGENIC
2L	21003390	2L_21003390_SNP [dm3] 2L_21003390_SNP [dm6]	G	C	4.569e^-4	1	INTRON CG42238
3L	2566981	3L_2566981_SNP [dm3] 3L_2566981_SNP [dm6]	A	G	4.577e^-4	1	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	25918808	3R_25918808_SNP [dm3] 3R_30093086_SNP [dm6]	T	C	4.602e^-4	1	INTRON sima
3L	4230717	3L_4230717_SNP [dm3] 3L_4230717_SNP [dm6]	C	A	4.604e^-4	1	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16341345	2R_16341345_SNP [dm3] 2R_20453840_SNP [dm6]	T	A	4.604e^-4	1	INTRON CG12484
3L	15002874	3L_15002874_SNP [dm3] 3L_15009774_SNP [dm6]	A	G	4.609e^-4	1	INTRON Reck
3L	11374179	3L_11374179_INS [dm3] 3L_11381079_INS [dm6]	T	TTTTCACTTGCCGAGATCAG...	4.611e^-4	1	INTERGENIC
2R	5828078	2R_5828078_SNP [dm3] 2R_9940573_SNP [dm6]	T	C	4.612e^-4	1	INTRON Mef2	regulatory region REDfly_CRMs
3L	18202997	3L_18202997_SNP [dm3] 3L_18209897_SNP [dm6]	A	T	4.624e^-4	1	INTERGENIC
3R	4937580	3R_4937580_SNP [dm3] 3R_9111858_SNP [dm6]	C	T	4.627e^-4	1	INTRON pum
3L	19194617	3L_19194617_SNP [dm3] 3L_19201517_SNP [dm6]	C	T	4.629e^-4	1	INTRON fz2
X	5130166	X_5130166_SNP [dm3] X_5236133_SNP [dm6]	T	A	4.638e^-4	1	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
2R	16774155	2R_16774155_SNP [dm3] 2R_20886650_SNP [dm6]	C	A	4.644e^-4	1	SYNONYMOUS_CODING otp
2L	16049525	2L_16049525_SNP [dm3] 2L_16049525_SNP [dm6]	A	C	4.651e^-4	1	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17172325	3L_17172325_SNP [dm3] 3L_17179225_SNP [dm6]	A	T	4.653e^-4	1	INTRON Rbp6
2L	22111148	2L_22111148_INS [dm3] 2L_22111148_INS [dm6]	T	TAGAGGGTTGT...	4.659e^-4	1	DOWNSTREAM CG6675 INTERGENIC	transposable element FlyBase
2R	10864069	2R_10864069_SNP [dm3] 2R_14976564_SNP [dm6]	C	G	4.677e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21109868	2L_21109868_SNP [dm3] 2L_21109868_SNP [dm6]	C	T	4.678e^-4	1	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16513751	3R_16513751_SNP [dm3] 3R_20688029_SNP [dm6]	T	C	4.689e^-4	1	DOWNSTREAM Oamb INTERGENIC
X	8327913	X_8327913_SNP [dm3] X_8433880_SNP [dm6]	T	C	4.693e^-4	1	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
3L	18198334	3L_18198334_SNP [dm3] 3L_18205234_SNP [dm6]	A	C	4.709e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15085122	2L_15085122_SNP [dm3] 2L_15085122_SNP [dm6]	T	C	4.711e^-4	1	INTRON CG15270
3R	25918288	3R_25918288_SNP [dm3] 3R_30092566_SNP [dm6]	G	C	4.715e^-4	1	INTRON sima
3L	908497	3L_908497_SNP [dm3] 3L_908497_SNP [dm6]	A	T	4.715e^-4	1	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	19531039	2R_19531039_SNP [dm3] 2R_23643516_SNP [dm6]	C	A	4.716e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11651098	2R_11651098_SNP [dm3] 2R_15763593_SNP [dm6]	C	T	4.717e^-4	1	SPLICE_SITE_REGION Zasp52 INTRON Zasp52
3L	18195723	3L_18195723_SNP [dm3] 3L_18202623_SNP [dm6]	G	A	4.726e^-4	1	NON_SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_sens
2L	11067331	2L_11067331_SNP [dm3] 2L_11067331_SNP [dm6]	C	G	4.733e^-4	1	UPSTREAM Samuel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10811645	3L_10811645_SNP [dm3] 3L_10818545_SNP [dm6]	G	T	4.735e^-4	1	INTERGENIC
2R	9048826	2R_9048826_SNP [dm3] 2R_13161321_SNP [dm6]	A	C	4.736e^-4	1	INTRON Nrk	TF binding site BDTNP1_TFBS_twi
2R	18941907	2R_18941907_SNP [dm3] 2R_23054384_SNP [dm6]	T	A	4.736e^-4	1	INTERGENIC
3L	3031327	3L_3031327_SNP [dm3] 3L_3031327_SNP [dm6]	C	T	4.747e^-4	1	INTERGENIC
2R	10470394	2R_10470394_SNP [dm3] 2R_14582889_SNP [dm6]	T	G	4.748e^-4	1	INTRON ttv	TF binding site mE1_TFBS_cad
3L	21028618	3L_21028618_SNP [dm3] 3L_21035518_SNP [dm6]	T	C	4.751e^-4	1	INTRON siz	TF binding site BDTNP1_TFBS_dl
2R	11999664	2R_11999664_SNP [dm3] 2R_16112159_SNP [dm6]	T	A	4.761e^-4	1	INTRON Asph
3L	17172324	3L_17172324_SNP [dm3] 3L_17179224_SNP [dm6]	C	A	4.765e^-4	1	INTRON Rbp6
3L	10400708	3L_10400708_SNP [dm3] 3L_10407608_SNP [dm6]	A	G	4.765e^-4	1	INTERGENIC
X	9548860	X_9548860_SNP [dm3] X_9654827_SNP [dm6]	G	T	4.767e^-4	1	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2R	14125367	2R_14125367_SNP [dm3] 2R_18237862_SNP [dm6]	G	A	4.774e^-4	1	INTERGENIC
3R	16385606	3R_16385606_SNP [dm3] 3R_20559884_SNP [dm6]	T	G	4.780e^-4	1	UPSTREAM CG5191 DOWNSTREAM CG5180 INTRON CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8922212	2R_8922212_SNP [dm3] 2R_13034707_SNP [dm6]	C	T	4.786e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14455842	3R_14455842_SNP [dm3] 3R_18630120_SNP [dm6]	T	A	4.789e^-4	1	INTRON qin & 1 other
3R	25918036	3R_25918036_SNP [dm3] 3R_30092314_SNP [dm6]	C	T	4.792e^-4	1	INTRON sima
3R	23998629	3R_23998629_SNP [dm3] 3R_28172907_SNP [dm6]	A	T	4.802e^-4	1	INTRON CG34354
X	1225378	X_1225378_SNP [dm3] X_1331345_SNP [dm6]	G	T	4.807e^-4	1	SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
X	1225480	X_1225480_SNP [dm3] X_1331447_SNP [dm6]	C	T	4.807e^-4	1	SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
X	19646492	X_19646492_SNP [dm3] X_19752459_SNP [dm6]	T	C	4.810e^-4	1	INTRON Pmp70	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10077370	2L_10077370_SNP [dm3] 2L_10077370_SNP [dm6]	T	C	4.824e^-4	1	INTRON CG44153	TF binding site mE1_TFBS_cad
3R	13312958	3R_13312958_SNP [dm3] 3R_17487236_SNP [dm6]	T	C	4.828e^-4	1	INTRON Dscam3
2R	6143354	2R_6143354_SNP [dm3] 2R_10255849_SNP [dm6]	G	T	4.828e^-4	1	UPSTREAM CG12911 DOWNSTREAM CG12913 INTERGENIC
3L	21028613	3L_21028613_SNP [dm3] 3L_21035513_SNP [dm6]	C	T	4.848e^-4	1	INTRON siz	TF binding site BDTNP1_TFBS_dl
X	12001541	X_12001541_SNP [dm3] X_12107508_SNP [dm6]	A	T	4.848e^-4	1	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3R	23594050	3R_23594050_SNP [dm3] 3R_27768328_SNP [dm6]	G	A	4.851e^-4	1	UTR_3_PRIME CG34353
2L	11845067	2L_11845067_SNP [dm3] 2L_11845067_SNP [dm6]	A	G	4.854e^-4	1	INTRON Pde1c
X	1147340	X_1147340_SNP [dm3] X_1253307_SNP [dm6]	A	C	4.855e^-4	1	INTRON Atf3
X	15254521	X_15254521_SNP [dm3] X_15360488_SNP [dm6]	G	T	4.860e^-4	1	UTR_5_PRIME Pp1-13C INTRON acj6
2L	20818416	2L_20818416_SNP [dm3] 2L_20818416_SNP [dm6]	T	G	4.862e^-4	1	SYNONYMOUS_CODING CheB38a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7287372	2R_7287372_SNP [dm3] 2R_11399867_SNP [dm6]	C	T	4.889e^-4	1	UPSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18334091	2R_18334091_SNP [dm3] 2R_22446586_SNP [dm6]	T	C	4.890e^-4	1	INTERGENIC
3L	15912729	3L_15912729_SNP [dm3] 3L_15919629_SNP [dm6]	G	T	4.894e^-4	1	INTRON sff
3R	12701969	3R_12701969_SNP [dm3] 3R_16876247_SNP [dm6]	G	A	4.900e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	9022858	2L_9022858_SNP [dm3] 2L_9022858_SNP [dm6]	A	G	4.908e^-4	1	INTERGENIC
3R	8718953	3R_8718953_SNP [dm3] 3R_12893231_SNP [dm6]	T	A	4.930e^-4	1	UPSTREAM CR44235 DOWNSTREAM CR33929 & 1 other INTERGENIC
3L	18388579	3L_18388579_SNP [dm3] 3L_18395479_SNP [dm6]	A	G	4.931e^-4	1	INTERGENIC
3R	21477357	3R_21477357_SNP [dm3] 3R_25651635_SNP [dm6]	A	C	4.944e^-4	1	DOWNSTREAM mir-92b INTERGENIC
X	14771184	X_14771184_SNP [dm3] X_14877151_SNP [dm6]	A	C	4.959e^-4	1	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
X	5910552	X_5910552_SNP [dm3] X_6016519_SNP [dm6]	T	C	4.968e^-4	1	INTERGENIC
2L	9674463	2L_9674463_SNP [dm3] 2L_9674463_SNP [dm6]	C	T	4.969e^-4	1	INTERGENIC
2L	13804749	2L_13804749_DEL [dm3] 2L_13804749_DEL [dm6]	TAATGTGTATGGTGCTTCCC...	T	4.970e^-4	1	INTRON CAH1
2L	3267655	2L_3267655_SNP [dm3] 2L_3267655_SNP [dm6]	T	C	4.974e^-4	1	UPSTREAM CR44484 INTERGENIC
2R	9859787	2R_9859787_SNP [dm3] 2R_13972282_SNP [dm6]	C	G	4.986e^-4	1	SYNONYMOUS_CODING CG18568 DOWNSTREAM CG6701
3R	10387766	3R_10387766_SNP [dm3] 3R_14562044_SNP [dm6]	A	T	4.986e^-4	1	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
2L	3963330	2L_3963330_SNP [dm3] 2L_3963330_SNP [dm6]	A	T	4.989e^-4	1	INTRON fred	TF binding site mE1_TFBS_bab1
3L	4388149	3L_4388149_SNP [dm3] 3L_4388149_SNP [dm6]	A	C	5.001e^-4	1	INTRON slow
X	15561985	X_15561985_SNP [dm3] X_15667952_SNP [dm6]	T	A	5.002e^-4	1	UTR_3_PRIME CG15646	TF binding site mE1_TFBS_cnc
3R	7816336	3R_7816336_SNP [dm3] 3R_11990614_SNP [dm6]	C	T	5.003e^-4	1	UPSTREAM mfas INTRON mfas
3L	3021363	3L_3021363_SNP [dm3] 3L_3021363_SNP [dm6]	A	C	5.009e^-4	1	INTERGENIC
X	1229704	X_1229704_SNP [dm3] X_1335671_SNP [dm6]	T	G	5.011e^-4	1	INTRON CG11409
3R	16385603	3R_16385603_SNP [dm3] 3R_20559881_SNP [dm6]	A	G	5.020e^-4	1	UPSTREAM CG5191 DOWNSTREAM CG5180 INTRON CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25931173	3R_25931173_SNP [dm3] 3R_30105451_SNP [dm6]	T	A	5.027e^-4	1	INTRON sima
2R	14134844	2R_14134844_SNP [dm3] 2R_18247339_SNP [dm6]	G	C	5.027e^-4	1	UPSTREAM CR44420 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	1234319	X_1234319_SNP [dm3] X_1340286_SNP [dm6]	A	G	5.047e^-4	1	INTRON CG11409
X	19485201	X_19485201_SNP [dm3] X_19591168_SNP [dm6]	G	C	5.053e^-4	1	UPSTREAM CG14219 INTERGENIC
2L	10025839	2L_10025839_SNP [dm3] 2L_10025839_SNP [dm6]	G	T	5.069e^-4	1	UPSTREAM CG13127 INTERGENIC
2R	18871388	2R_18871388_SNP [dm3] 2R_22983865_SNP [dm6]	T	C	5.073e^-4	1	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12350855	2R_12350855_SNP [dm3] 2R_16463350_SNP [dm6]	T	A	5.074e^-4	1	INTERGENIC
3L	11338583	3L_11338583_INS [dm3] 3L_11345483_INS [dm6]	A	AC	5.085e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	1237117	X_1237117_SNP [dm3] X_1343084_SNP [dm6]	G	A	5.090e^-4	1	NON_SYNONYMOUS_CODING CG11412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3451354	3L_3451354_SNP [dm3] 3L_3451354_SNP [dm6]	G	T	5.093e^-4	1	INTRON eIF5B
3L	17536622	3L_17536622_SNP [dm3] 3L_17543522_SNP [dm6]	C	T	5.096e^-4	1	SYNONYMOUS_CODING Nedd4
3L	17367302	3L_17367302_SNP [dm3] 3L_17374202_SNP [dm6]	G	C	5.099e^-4	1	INTRON Cad74A	TF binding site mE1_TFBS_cad
3R	25922642	3R_25922642_SNP [dm3] 3R_30096920_SNP [dm6]	C	T	5.104e^-4	1	INTRON sima	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	7313310	2R_7313310_SNP [dm3] 2R_11425805_SNP [dm6]	T	C	5.112e^-4	1	INTRON Drip	TF binding site mE1_TFBS_inv
3L	24360155	3L_24360155_SNP [dm3] 3L_24367055_SNP [dm6]	A	C	5.116e^-4	1	INTRON nvd
2R	3250007	2R_3250007_SNP [dm3] 2R_7362502_SNP [dm6]	A	G	5.129e^-4	1	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19179367	3L_19179367_SNP [dm3] 3L_19186267_SNP [dm6]	T	A	5.129e^-4	1	INTRON fz2
2L	2097169	2L_2097169_SNP [dm3] 2L_2097169_SNP [dm6]	G	T	5.157e^-4	1	INTRON dpr3
2L	8590823	2L_8590823_SNP [dm3] 2L_8590823_SNP [dm6]	G	A	5.165e^-4	1	INTRON Sema-1a & 1 other EXON CR43855
X	10819901	X_10819901_SNP [dm3] X_10925868_SNP [dm6]	T	A	5.168e^-4	1	DOWNSTREAM v INTERGENIC
3R	25918021	3R_25918021_SNP [dm3] 3R_30092299_SNP [dm6]	C	T	5.169e^-4	1	INTRON sima
X	11407740	X_11407740_SNP [dm3] X_11513707_SNP [dm6]	T	G	5.178e^-4	1	INTRON Drak
2L	4214016	2L_4214016_SNP [dm3] 2L_4214016_SNP [dm6]	T	C	5.181e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13676306	3R_13676306_SNP [dm3] 3R_17850584_SNP [dm6]	A	C	5.181e^-4	1	INTRON tinc
3L	6659194	3L_6659194_SNP [dm3] 3L_6666094_SNP [dm6]	G	A	5.181e^-4	1	UPSTREAM eIF4E-4 DOWNSTREAM CG32395 EXON CR45173
2R	17946268	2R_17946268_SNP [dm3] 2R_22058763_SNP [dm6]	G	A	5.182e^-4	1	DOWNSTREAM CG13501 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11104252	3L_11104252_SNP [dm3] 3L_11111152_SNP [dm6]	T	A	5.184e^-4	1	INTRON CG7638	TF binding site mE1_TFBS_HSA
3L	6817394	3L_6817394_INS [dm3] 3L_6824294_INS [dm6]	G	GCTGGATCG	5.191e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	613117	3L_613117_INS [dm3] 3L_613117_INS [dm6]	A	AAA	5.197e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	6299795	2L_6299795_SNP [dm3] 2L_6299795_SNP [dm6]	G	T	5.200e^-4	1	INTRON Ddr
X	1231946	X_1231946_SNP [dm3] X_1337913_SNP [dm6]	T	G	5.201e^-4	1	UTR_5_PRIME CG11409 INTRON CG11409	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18235206	X_18235206_INS [dm3] X_18341173_INS [dm6]	A	AA	5.209e^-4	1	INTRON CG6123
3L	12858003	3L_12858003_SNP [dm3] 3L_12864903_SNP [dm6]	A	C	5.211e^-4	1	INTERGENIC
2R	3111479	2R_3111479_SNP [dm3] 2R_7223974_SNP [dm6]	G	A	5.220e^-4	1	DOWNSTREAM pk INTERGENIC
2R	14128947	2R_14128947_SNP [dm3] 2R_18241442_SNP [dm6]	G	T	5.220e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7298847	2R_7298847_SNP [dm3] 2R_11411342_SNP [dm6]	A	T	5.220e^-4	1	UPSTREAM CG34054 DOWNSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_bab1
3R	17744037	3R_17744037_SNP [dm3] 3R_21918315_SNP [dm6]	T	C	5.221e^-4	1	INTERGENIC
2L	16100010	2L_16100010_SNP [dm3] 2L_16100010_SNP [dm6]	T	C	5.222e^-4	1	INTERGENIC
3R	16267456	3R_16267456_SNP [dm3] 3R_20441734_SNP [dm6]	A	T	5.230e^-4	1	INTRON Gfrl
2L	3982383	2L_3982383_SNP [dm3] 2L_3982383_SNP [dm6]	C	T	5.233e^-4	1	INTRON fred
X	3372892	X_3372892_SNP [dm3] X_3478859_SNP [dm6]	A	G	5.234e^-4	1	SYNONYMOUS_CODING CG10804 INTRON CR44999
3R	27771358	3R_27771358_INS [dm3] 3R_31945636_INS [dm6]	A	AT	5.238e^-4	1	UTR_5_PRIME heph INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17561537	3L_17561537_INS [dm3] 3L_17568437_INS [dm6]	A	AA	5.246e^-4	1	INTRON Eip74EF
2R	14131627	2R_14131627_SNP [dm3] 2R_18244122_SNP [dm6]	T	C	5.250e^-4	1	INTERGENIC
2L	10939598	2L_10939598_SNP [dm3] 2L_10939598_SNP [dm6]	C	T	5.256e^-4	1	INTRON dpr2
3L	14076479	3L_14076479_SNP [dm3] 3L_14083379_SNP [dm6]	C	A	5.261e^-4	1	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
2R	12592831	2R_12592831_SNP [dm3] 2R_16705326_SNP [dm6]	C	G	5.262e^-4	1	INTRON CG30463	TF binding site mE1_TFBS_chinmo
3R	17723005	3R_17723005_SNP [dm3] 3R_21897283_SNP [dm6]	G	A	5.265e^-4	1	INTRON CG6678
3R	18880540	3R_18880540_SNP [dm3] 3R_23054818_SNP [dm6]	C	G	5.273e^-4	1	SYNONYMOUS_CODING CG17119 UPSTREAM p53	TF binding site BDTNP1_TFBS_prd
2R	16647392	2R_16647392_SNP [dm3] 2R_20759887_SNP [dm6]	G	T	5.274e^-4	1	INTERGENIC
3R	9177432	3R_9177432_SNP [dm3] 3R_13351710_SNP [dm6]	A	T	5.286e^-4	1	INTERGENIC
3L	15921673	3L_15921673_SNP [dm3] 3L_15928573_SNP [dm6]	G	T	5.292e^-4	1	INTRON Pka-C3
3R	13951978	3R_13951978_SNP [dm3] 3R_18126256_SNP [dm6]	A	C	5.298e^-4	1	INTRON sr	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14125122	2R_14125122_SNP [dm3] 2R_18237617_SNP [dm6]	C	A	5.303e^-4	1	INTERGENIC
2L	907413	2L_907413_SNP [dm3] 2L_907413_SNP [dm6]	A	C	5.306e^-4	1	INTERGENIC
3L	13292802	3L_13292802_SNP [dm3] 3L_13299702_SNP [dm6]	T	A	5.307e^-4	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3R	25918051	3R_25918051_SNP [dm3] 3R_30092329_SNP [dm6]	C	T	5.312e^-4	1	INTRON sima
3L	17538005	3L_17538005_SNP [dm3] 3L_17544905_SNP [dm6]	G	A	5.324e^-4	1	SYNONYMOUS_CODING Nedd4
2R	500970	2R_500970_INS [dm3] 2R_4613465_INS [dm6]	G	GTTGG	5.341e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	4187122	3L_4187122_SNP [dm3] 3L_4187122_SNP [dm6]	C	A	5.343e^-4	1	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	5827969	2R_5827969_SNP [dm3] 2R_9940464_SNP [dm6]	G	T	5.347e^-4	1	INTRON Mef2	regulatory region REDfly_CRMs
2R	11368061	2R_11368061_SNP [dm3] 2R_15480556_SNP [dm6]	G	T	5.348e^-4	1	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24039792	3R_24039792_SNP [dm3] 3R_28214070_SNP [dm6]	A	G	5.349e^-4	1	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7512935	2R_7512935_SNP [dm3] 2R_11625430_SNP [dm6]	T	A	5.349e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	24291803	3L_24291803_SNP [dm3] 3L_24298703_SNP [dm6]	T	C	5.353e^-4	1	UTR_3_PRIME Snap25
3R	25932756	3R_25932756_SNP [dm3] 3R_30107034_SNP [dm6]	A	T	5.355e^-4	1	INTRON sima
2R	7199869	2R_7199869_SNP [dm3] 2R_11312364_SNP [dm6]	C	T	5.359e^-4	1	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
2L	16500171	2L_16500171_DEL [dm3] 2L_16500171_DEL [dm6]	GAG	G	5.359e^-4	1	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17836922	2R_17836922_SNP [dm3] 2R_21949417_SNP [dm6]	T	A	5.364e^-4	1	INTERGENIC
X	19513576	X_19513576_SNP [dm3] X_19619543_SNP [dm6]	A	G	5.367e^-4	1	SYNONYMOUS_CODING CG14221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21479492	3R_21479492_SNP [dm3] 3R_25653770_SNP [dm6]	A	G	5.371e^-4	1	SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
2R	20407643	2R_20407643_INS [dm3] 2R_24520120_INS [dm6]	A	AT	5.374e^-4	1	FRAME_SHIFT Ir60d DOWNSTREAM Ir60c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12787271	2R_12787271_SNP [dm3] 2R_16899766_SNP [dm6]	T	C	5.389e^-4	1	SYNONYMOUS_CODING inaC
3L	12184378	3L_12184378_SNP [dm3] 3L_12191278_SNP [dm6]	C	T	5.394e^-4	1	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1234348	X_1234348_SNP [dm3] X_1340315_SNP [dm6]	C	T	5.399e^-4	1	INTRON CG11409
2R	9907887	2R_9907887_SNP [dm3] 2R_14020382_SNP [dm6]	T	G	5.403e^-4	1	INTRON mam
3R	16267261	3R_16267261_SNP [dm3] 3R_20441539_SNP [dm6]	A	C	5.413e^-4	1	INTRON Gfrl
X	6360732	X_6360732_SNP [dm3] X_6466699_SNP [dm6]	A	G	5.415e^-4	1	UTR_3_PRIME CG42340 INTRON CG42340	TF binding site BDTNP1_TFBS_sna
3R	13316330	3R_13316330_SNP [dm3] 3R_17490608_SNP [dm6]	C	T	5.422e^-4	1	INTRON Dscam3
3R	21979301	3R_21979301_SNP [dm3] 3R_26153579_SNP [dm6]	A	C	5.423e^-4	1	INTERGENIC
2L	2729550	2L_2729550_SNP [dm3] 2L_2729550_SNP [dm6]	C	T	5.424e^-4	1	UPSTREAM CG31689 INTRON CG31689
3L	18200945	3L_18200945_SNP [dm3] 3L_18207845_SNP [dm6]	C	T	5.436e^-4	1	INTERGENIC
2L	9996851	2L_9996851_SNP [dm3] 2L_9996851_SNP [dm6]	G	A	5.440e^-4	1	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9996857	2L_9996857_INS [dm3] 2L_9996857_INS [dm6]	T	AAA	5.440e^-4	1	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	19485740	X_19485740_SNP [dm3] X_19591707_SNP [dm6]	T	G	5.441e^-4	1	UPSTREAM CG14205 INTERGENIC
3R	19837423	3R_19837423_DEL [dm3] 3R_24011701_DEL [dm6]	TT	T	5.442e^-4	1	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
3L	824209	3L_824209_SNP [dm3] 3L_824209_SNP [dm6]	G	A	5.445e^-4	1	INTERGENIC
2R	10466385	2R_10466385_SNP [dm3] 2R_14578880_SNP [dm6]	T	G	5.452e^-4	1	INTRON ttv
2L	16473666	2L_16473666_SNP [dm3] 2L_16473666_SNP [dm6]	T	C	5.458e^-4	1	INTRON dac
2R	6642300	2R_6642300_SNP [dm3] 2R_10754795_SNP [dm6]	A	C	5.458e^-4	1	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3L	10656475	3L_10656475_SNP [dm3] 3L_10663375_SNP [dm6]	C	G	5.466e^-4	1	UPSTREAM CG32068 DOWNSTREAM CG8003 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5184923	X_5184923_INS [dm3] X_5290890_INS [dm6]	A	ATCA	5.470e^-4	1	INTERGENIC
2L	13812577	2L_13812577_SNP [dm3] 2L_13812577_SNP [dm6]	G	A	5.479e^-4	1	SYNONYMOUS_CODING CG16865 DOWNSTREAM CG16888	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	9009818	2L_9009818_SNP [dm3] 2L_9009818_SNP [dm6]	C	A	5.485e^-4	1	UPSTREAM CG9568 INTERGENIC
X	18231381	X_18231381_SNP [dm3] X_18337348_SNP [dm6]	C	A	5.485e^-4	1	INTRON CG6123
2R	9928330	2R_9928330_SNP [dm3] 2R_14040825_SNP [dm6]	C	T	5.504e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18851064	3L_18851064_SNP [dm3] 3L_18857964_SNP [dm6]	G	A	5.528e^-4	1	DOWNSTREAM CR45388 INTERGENIC
X	12622990	X_12622990_SNP [dm3] X_12728957_SNP [dm6]	G	T	5.531e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2R	7512917	2R_7512917_DEL [dm3] 2R_11625412_DEL [dm6]	CT	A	5.537e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512921	2R_7512921_SNP [dm3] 2R_11625416_SNP [dm6]	T	A	5.537e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7512923	2R_7512923_MNP [dm3] 2R_11625418_MNP [dm6]	CCA	AAG	5.537e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3903575	X_3903575_INS [dm3] X_4009542_INS [dm6]	C	CG	5.537e^-4	1	INTERGENIC
3L	3042270	3L_3042270_SNP [dm3] 3L_3042270_SNP [dm6]	C	T	5.550e^-4	1	UPSTREAM Jafrac2 INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	5405646	X_5405646_SNP [dm3] X_5511613_SNP [dm6]	G	A	5.556e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
X	12606742	X_12606742_SNP [dm3] X_12712709_SNP [dm6]	T	A	5.562e^-4	1	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18730031	3L_18730031_SNP [dm3] 3L_18736931_SNP [dm6]	A	T	5.564e^-4	1	INTERGENIC
3R	13838782	3R_13838782_SNP [dm3] 3R_18013060_SNP [dm6]	T	C	5.580e^-4	1	INTRON cpo	TF binding site mE1_TFBS_cad
X	18231376	X_18231376_SNP [dm3] X_18337343_SNP [dm6]	A	G	5.582e^-4	1	INTRON CG6123
2R	14208982	2R_14208982_SNP [dm3] 2R_18321477_SNP [dm6]	T	C	5.586e^-4	1	INTRON sbb
2L	11500118	2L_11500118_SNP [dm3] 2L_11500118_SNP [dm6]	T	A	5.609e^-4	1	INTERGENIC
2L	15057686	2L_15057686_SNP [dm3] 2L_15057686_SNP [dm6]	A	C	5.613e^-4	1	UTR_5_PRIME ck UPSTREAM CG33679	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19185491	3L_19185491_SNP [dm3] 3L_19192391_SNP [dm6]	T	C	5.622e^-4	1	INTRON fz2
3R	17063180	3R_17063180_SNP [dm3] 3R_21237458_SNP [dm6]	A	T	5.623e^-4	1	UPSTREAM e INTERGENIC	regulatory region REDfly_CRMs
3L	15954086	3L_15954086_SNP [dm3] 3L_15960986_SNP [dm6]	A	T	5.628e^-4	1	UTR_3_PRIME l_3_72Ab DOWNSTREAM CG17032	TF binding site mE1_TFBS_cad
X	12396871	X_12396871_SNP [dm3] X_12502838_SNP [dm6]	T	C	5.630e^-4	1	INTRON CG2556
2R	16084501	2R_16084501_SNP [dm3] 2R_20196996_SNP [dm6]	A	C	5.633e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17381769	2R_17381769_DEL [dm3] 2R_21494264_DEL [dm6]	GGTTACACA	G	5.636e^-4	1	INTRON Fkbp14
3R	9896260	3R_9896260_SNP [dm3] 3R_14070538_SNP [dm6]	T	C	5.636e^-4	1	INTRON foxo
2R	14133952	2R_14133952_SNP [dm3] 2R_18246447_SNP [dm6]	G	T	5.654e^-4	1	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	25285704	3R_25285704_DEL [dm3] 3R_29459982_DEL [dm6]	CGAGCTGTAGAATC...	C	5.656e^-4	1	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18200975	3L_18200975_SNP [dm3] 3L_18207875_SNP [dm6]	C	T	5.659e^-4	1	INTERGENIC
X	15415650	X_15415650_SNP [dm3] X_15521617_SNP [dm6]	G	T	5.664e^-4	1	INTRON Ac13E
2L	8241797	2L_8241797_SNP [dm3] 2L_8241797_SNP [dm6]	A	G	5.668e^-4	1	UTR_5_PRIME Spn28F UPSTREAM CR43262 & 1 other
3R	15190701	3R_15190701_SNP [dm3] 3R_19364979_SNP [dm6]	G	C	5.670e^-4	1	INTERGENIC
2R	8853457	2R_8853457_SNP [dm3] 2R_12965952_SNP [dm6]	G	T	5.681e^-4	1	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9693063	3R_9693063_SNP [dm3] 3R_13867341_SNP [dm6]	C	T	5.683e^-4	1	DOWNSTREAM E5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16084502	2R_16084502_SNP [dm3] 2R_20196997_SNP [dm6]	C	T	5.691e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20304841	3R_20304841_SNP [dm3] 3R_24479119_SNP [dm6]	C	T	5.697e^-4	1	INTERGENIC
3R	25648000	3R_25648000_SNP [dm3] 3R_29822278_SNP [dm6]	T	G	5.707e^-4	1	INTRON neo
2R	7203076	2R_7203076_SNP [dm3] 2R_11315571_SNP [dm6]	T	C	5.714e^-4	1	INTRON nompA	TF binding site mE1_TFBS_cad
3L	6282767	3L_6282767_SNP [dm3] 3L_6289667_SNP [dm6]	G	A	5.715e^-4	1	INTERGENIC
2R	16774080	2R_16774080_SNP [dm3] 2R_20886575_SNP [dm6]	C	T	5.719e^-4	1	SYNONYMOUS_CODING otp
2R	6253546	2R_6253546_SNP [dm3] 2R_10366041_SNP [dm6]	G	T	5.725e^-4	1	UPSTREAM CG42732 INTRON CG42732
2L	17062810	2L_17062810_DEL [dm3] 2L_17062810_DEL [dm6]	CACTGCGTTACTTCTGGTTA...	C	5.730e^-4	1	INTERGENIC
3L	15900468	3L_15900468_SNP [dm3] 3L_15907368_SNP [dm6]	C	A	5.731e^-4	1	INTRON sff
3L	6126266	3L_6126266_SNP [dm3] 3L_6133166_SNP [dm6]	G	A	5.732e^-4	1	SYNONYMOUS_CODING Lcp65Ag2
2R	16121882	2R_16121882_SNP [dm3] 2R_20234377_SNP [dm6]	G	C	5.744e^-4	1	SPLICE_SITE_REGION CG11044 UPSTREAM CG44624 INTRON CG11044
2L	20772044	2L_20772044_SNP [dm3] 2L_20772044_SNP [dm6]	C	A	5.748e^-4	1	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9491185	2L_9491185_INS [dm3] 2L_9491185_INS [dm6]	T	TT	5.751e^-4	1	UTR_3_PRIME Gdi DOWNSTREAM Gdi
3L	18388585	3L_18388585_SNP [dm3] 3L_18395485_SNP [dm6]	G	A	5.757e^-4	1	INTERGENIC
X	19737547	X_19737547_SNP [dm3] X_19843514_SNP [dm6]	C	G	5.759e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17814668	3L_17814668_SNP [dm3] 3L_17821568_SNP [dm6]	G	T	5.761e^-4	1	SYNONYMOUS_CODING Ir75c
2L	3071552	2L_3071552_SNP [dm3] 2L_3071552_SNP [dm6]	A	G	5.765e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3260758	3R_3260758_SNP [dm3] 3R_7435036_SNP [dm6]	A	T	5.773e^-4	1	INTERGENIC
2R	13356414	2R_13356414_SNP [dm3] 2R_17468909_SNP [dm6]	C	G	5.779e^-4	1	SYNONYMOUS_CODING Tes UPSTREAM qkr54B
3L	15520307	3L_15520307_SNP [dm3] 3L_15527207_SNP [dm6]	G	T	5.782e^-4	1	NON_SYNONYMOUS_CODING CG42729 UPSTREAM CG33985 DOWNSTREAM CG42728	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	16473668	2L_16473668_DEL [dm3] 2L_16473668_DEL [dm6]	TCT	T	5.785e^-4	1	INTRON dac
2L	8177280	2L_8177280_SNP [dm3] 2L_8177280_SNP [dm6]	C	A	5.790e^-4	1	SYNONYMOUS_CODING Piezo
X	6102941	X_6102941_SNP [dm3] X_6208908_SNP [dm6]	A	G	5.793e^-4	1	INTERGENIC
3R	25918215	3R_25918215_SNP [dm3] 3R_30092493_SNP [dm6]	C	G	5.800e^-4	1	INTRON sima
2L	1719867	2L_1719867_SNP [dm3] 2L_1719867_SNP [dm6]	C	T	5.831e^-4	1	INTRON Rim2
3R	5726066	3R_5726066_SNP [dm3] 3R_9900344_SNP [dm6]	A	G	5.838e^-4	1	INTRON Glut4EF
2R	8362809	2R_8362809_DEL [dm3] 2R_12475304_DEL [dm6]	CCAATATAATGAGCTA...	C	5.841e^-4	1	INTRON Dh44-R2
3L	16981362	3L_16981362_SNP [dm3] 3L_16988262_SNP [dm6]	C	A	5.842e^-4	1	INTRON Exn
3L	1590020	3L_1590020_SNP [dm3] 3L_1590020_SNP [dm6]	C	A	5.842e^-4	1	INTRON CG13917
3L	5190453	3L_5190453_SNP [dm3] 3L_5197353_SNP [dm6]	C	A	5.844e^-4	1	INTRON shep
3R	16386410	3R_16386410_SNP [dm3] 3R_20560688_SNP [dm6]	A	G	5.848e^-4	1	UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17646304	3L_17646304_SNP [dm3] 3L_17653204_SNP [dm6]	G	C	5.853e^-4	1	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18229666	X_18229666_SNP [dm3] X_18335633_SNP [dm6]	C	T	5.863e^-4	1	INTRON CG6123
2L	11822996	2L_11822996_SNP [dm3] 2L_11822996_SNP [dm6]	C	A	5.867e^-4	1	INTRON Pde1c
2L	20899068	2L_20899068_SNP [dm3] 2L_20899068_SNP [dm6]	T	C	5.868e^-4	1	INTRON sky & 1 other
2R	3700007	2R_3700007_SNP [dm3] 2R_7812502_SNP [dm6]	C	T	5.871e^-4	1	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14124910	3L_14124910_SNP [dm3] 3L_14131810_SNP [dm6]	G	A	5.872e^-4	1	UPSTREAM Sox21b INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14201263	3L_14201263_SNP [dm3] 3L_14208163_SNP [dm6]	T	G	5.877e^-4	1	INTRON nuf
X	5804644	X_5804644_SNP [dm3] X_5910611_SNP [dm6]	A	G	5.883e^-4	1	SYNONYMOUS_CODING CG12236 INTRON CG12236
2L	9799671	2L_9799671_INS [dm3] 2L_9799671_INS [dm6]	G	GGTTGTTGTT	5.885e^-4	1	INTRON nAChRalpha6
2R	18337054	2R_18337054_SNP [dm3] 2R_22449549_SNP [dm6]	G	T	5.897e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7998613	X_7998613_SNP [dm3] X_8104580_SNP [dm6]	G	C	5.908e^-4	1	SYNONYMOUS_CODING Gclc
2R	7512878	2R_7512878_SNP [dm3] 2R_11625373_SNP [dm6]	A	T	5.913e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9710947	2L_9710947_SNP [dm3] 2L_9710947_SNP [dm6]	C	T	5.924e^-4	1	SYNONYMOUS_CODING CG4364 DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11065656	2L_11065656_SNP [dm3] 2L_11065656_SNP [dm6]	A	T	5.937e^-4	1	INTRON Samuel	TF binding site BDTNP1_TFBS_Med
2R	7512869	2R_7512869_DEL [dm3] 2R_11625364_DEL [dm6]	AAG	C	5.938e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6917326	X_6917326_SNP [dm3] X_7023293_SNP [dm6]	T	C	5.942e^-4	1	INTRON CG12541
X	1133822	X_1133822_SNP [dm3] X_1239789_SNP [dm6]	G	A	5.943e^-4	1	UTR_5_PRIME CG11403	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	24291222	3R_24291222_SNP [dm3] 3R_28465500_SNP [dm6]	T	A	5.947e^-4	1	INTRON beat-VI
2R	7313248	2R_7313248_MNP [dm3] 2R_11425743_MNP [dm6]	TTG	CGT	5.956e^-4	1	INTRON Drip	TF binding site mE1_TFBS_inv
2L	4016609	2L_4016609_SNP [dm3] 2L_4016609_SNP [dm6]	A	G	5.959e^-4	1	INTERGENIC
3L	17172339	3L_17172339_SNP [dm3] 3L_17179239_SNP [dm6]	A	G	5.960e^-4	1	INTRON Rbp6

By genomic position
Variant impact
Gene name

se_PhototaxisScor_1w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results