DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.658e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.08953

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2025 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	16722353	X_16722353_SNP [dm3] X_16828320_SNP [dm6]	T	A	4.159e^-7	0.318	UPSTREAM CG13004 INTRON CG13004
X	16722372	X_16722372_SNP [dm3] X_16828339_SNP [dm6]	T	C	5.571e^-7	0.318	UPSTREAM CG13004 INTRON CG13004
3L	18198297	3L_18198297_SNP [dm3] 3L_18205197_SNP [dm6]	C	G	6.095e^-7	0.318	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15932419	3L_15932419_DEL [dm3] 3L_15939319_DEL [dm6]	ATATA	A	6.774e^-7	0.318	INTRON Pka-C3
3L	2184100	3L_2184100_SNP [dm3] 3L_2184100_SNP [dm6]	T	C	1.393e^-6	0.522	INTERGENIC
X	16722358	X_16722358_SNP [dm3] X_16828325_SNP [dm6]	C	T	2.281e^-6	0.621	UPSTREAM CG13004 INTRON CG13004
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	2.642e^-6	0.621	INTRON bol
3L	9618082	3L_9618082_SNP [dm3] 3L_9624982_SNP [dm6]	A	G	2.827e^-6	0.621	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	16722360	X_16722360_DEL [dm3] X_16828327_DEL [dm6]	CCC	C	2.981e^-6	0.621	UPSTREAM CG13004 INTRON CG13004
3R	2915761	3R_2915761_SNP [dm3] 3R_7090039_SNP [dm6]	G	T	3.854e^-6	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	4.642e^-6	0.733	INTRON bol
3R	8613417	3R_8613417_SNP [dm3] 3R_12787695_SNP [dm6]	C	T	4.862e^-6	0.733	INTERGENIC
3R	5126757	3R_5126757_SNP [dm3] 3R_9301035_SNP [dm6]	G	A	5.083e^-6	0.733	INTRON CG8861
2R	19672392	2R_19672392_SNP [dm3] 2R_23784869_SNP [dm6]	C	T	5.618e^-6	0.753	INTRON CG9850
3L	2183985	3L_2183985_DEL [dm3] 3L_2183985_DEL [dm6]	AAGCTTATGATATTA...	A	6.832e^-6	0.801	INTERGENIC
3L	2184101	3L_2184101_SNP [dm3] 3L_2184101_SNP [dm6]	A	G	6.832e^-6	0.801	INTERGENIC
2L	2229601	2L_2229601_SNP [dm3] 2L_2229601_SNP [dm6]	C	A	8.186e^-6	0.886	INTRON rti	TF binding site mE1_TFBS_HSA
2R	4762657	2R_4762657_SNP [dm3] 2R_8875152_SNP [dm6]	T	A	8.501e^-6	0.886	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19648432	3R_19648432_SNP [dm3] 3R_23822710_SNP [dm6]	C	A	1.149e^-5	0.903	INTRON CG34355
3R	16564015	3R_16564015_SNP [dm3] 3R_20738293_SNP [dm6]	G	T	1.166e^-5	0.903	NON_SYNONYMOUS_CODING CG17267 UTR_3_PRIME cdc2c DOWNSTREAM cdc2c
2L	13153640	2L_13153640_SNP [dm3] 2L_13153640_SNP [dm6]	G	A	1.287e^-5	0.903	INTERGENIC
3R	26478927	3R_26478927_SNP [dm3] 3R_30653205_SNP [dm6]	A	C	1.370e^-5	0.903	INTERGENIC
2R	11837401	2R_11837401_SNP [dm3] 2R_15949896_SNP [dm6]	G	A	1.370e^-5	0.903	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_chinmo
3R	26478931	3R_26478931_SNP [dm3] 3R_30653209_SNP [dm6]	A	G	1.428e^-5	0.903	INTERGENIC
3R	14804675	3R_14804675_SNP [dm3] 3R_18978953_SNP [dm6]	G	C	1.445e^-5	0.903	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2L	8741185	2L_8741185_DEL [dm3] 2L_8741185_DEL [dm6]	CATTTCA	C	1.466e^-5	0.903	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	15932494	3L_15932494_SNP [dm3] 3L_15939394_SNP [dm6]	G	A	1.473e^-5	0.903	INTRON Pka-C3
2L	2245901	2L_2245901_SNP [dm3] 2L_2245901_SNP [dm6]	A	T	1.511e^-5	0.903	DOWNSTREAM CG4267 EXON CR42859
2R	19334422	2R_19334422_SNP [dm3] 2R_23446899_SNP [dm6]	C	A	1.529e^-5	0.903	INTRON CG43795
3L	9945600	3L_9945600_SNP [dm3] 3L_9952500_SNP [dm6]	T	G	1.750e^-5	0.903	INTRON CG34356
3R	26478928	3R_26478928_SNP [dm3] 3R_30653206_SNP [dm6]	G	T	1.801e^-5	0.903	INTERGENIC
2L	17901462	2L_17901462_SNP [dm3] 2L_17901462_SNP [dm6]	C	T	1.873e^-5	0.903	DOWNSTREAM CR45332 INTERGENIC
2L	14549417	2L_14549417_SNP [dm3] 2L_14549417_SNP [dm6]	G	A	1.925e^-5	0.903	UPSTREAM CG4218 DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13926655	3R_13926655_DEL [dm3] 3R_18100933_DEL [dm6]	GCTGTCTAGAGTAATATG...	G	1.968e^-5	0.903	INTRON sr
2R	19673705	2R_19673705_SNP [dm3] 2R_23786182_SNP [dm6]	G	A	1.980e^-5	0.903	SYNONYMOUS_CODING CG9850
2R	9840058	2R_9840058_SNP [dm3] 2R_13952553_SNP [dm6]	G	A	2.014e^-5	0.903	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
3L	13913593	3L_13913593_DEL [dm3] 3L_13920493_DEL [dm6]	ATATAAATAAA...	A	2.047e^-5	0.903	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	15932497	3L_15932497_SNP [dm3] 3L_15939397_SNP [dm6]	A	T	2.049e^-5	0.903	INTRON Pka-C3
2R	8859065	2R_8859065_SNP [dm3] 2R_12971560_SNP [dm6]	G	C	2.069e^-5	0.903	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15071254	3R_15071254_SNP [dm3] 3R_19245532_SNP [dm6]	T	C	2.120e^-5	0.903	INTRON unc79
2L	14544833	2L_14544833_SNP [dm3] 2L_14544833_SNP [dm6]	T	C	2.156e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12617151	3R_12617151_SNP [dm3] 3R_16791429_SNP [dm6]	T	C	2.184e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_cad
X	14796675	X_14796675_SNP [dm3] X_14902642_SNP [dm6]	A	G	2.222e^-5	0.903	SYNONYMOUS_CODING CG9512 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9538817	2R_9538817_SNP [dm3] 2R_13651312_SNP [dm6]	T	C	2.300e^-5	0.903	INTRON fas
2L	14067057	2L_14067057_SNP [dm3] 2L_14067057_SNP [dm6]	T	G	2.454e^-5	0.903	INTRON nAChRalpha5
2L	1712337	2L_1712337_SNP [dm3] 2L_1712337_SNP [dm6]	G	A	2.465e^-5	0.903	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_chinmo
2L	16491275	2L_16491275_SNP [dm3] 2L_16491275_SNP [dm6]	C	T	2.555e^-5	0.903	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	15071168	3R_15071168_SNP [dm3] 3R_19245446_SNP [dm6]	G	A	2.618e^-5	0.903	INTRON unc79
3R	4687502	3R_4687502_SNP [dm3] 3R_8861780_SNP [dm6]	A	G	2.630e^-5	0.903	UPSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8151515	3R_8151515_SNP [dm3] 3R_12325793_SNP [dm6]	T	C	2.645e^-5	0.903	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16722420	X_16722420_SNP [dm3] X_16828387_SNP [dm6]	C	T	2.652e^-5	0.903	UPSTREAM CG13004 INTRON CG13004
3R	2980208	3R_2980208_SNP [dm3] 3R_7154486_SNP [dm6]	A	G	2.701e^-5	0.903	SYNONYMOUS_CODING MAGE DOWNSTREAM Sas-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13327641	2L_13327641_SNP [dm3] 2L_13327641_SNP [dm6]	A	G	2.743e^-5	0.903	INTRON CG43778
3R	24876852	3R_24876852_SNP [dm3] 3R_29051130_SNP [dm6]	T	C	2.768e^-5	0.903	SYNONYMOUS_CODING CG11841 DOWNSTREAM CG11837	TF binding site mE1_TFBS_cad
3R	4022486	3R_4022486_SNP [dm3] 3R_8196764_SNP [dm6]	A	C	2.803e^-5	0.903	DOWNSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_sens
3R	4687685	3R_4687685_SNP [dm3] 3R_8861963_SNP [dm6]	T	G	2.836e^-5	0.903	UPSTREAM tRNA:R:85Cb DOWNSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11618564	2R_11618564_SNP [dm3] 2R_15731059_SNP [dm6]	T	C	2.854e^-5	0.903	INTRON CG30089
3L	9619636	3L_9619636_SNP [dm3] 3L_9626536_SNP [dm6]	C	A	2.894e^-5	0.903	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
2L	16491446	2L_16491446_SNP [dm3] 2L_16491446_SNP [dm6]	C	A	2.947e^-5	0.903	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3L	5781105	3L_5781105_SNP [dm3] 3L_5788005_SNP [dm6]	C	G	2.956e^-5	0.903	INTERGENIC
3L	3983490	3L_3983490_SNP [dm3] 3L_3983490_SNP [dm6]	G	C	3.012e^-5	0.903	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14483860	2L_14483860_SNP [dm3] 2L_14483860_SNP [dm6]	C	A	3.097e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	15932392	3L_15932392_SNP [dm3] 3L_15939292_SNP [dm6]	A	G	3.097e^-5	0.903	INTRON Pka-C3
X	16956668	X_16956668_DEL [dm3] X_17062635_DEL [dm6]	AA	T	3.171e^-5	0.903	INTRON CG45002
3L	15932388	3L_15932388_DEL [dm3] 3L_15939288_DEL [dm6]	AT	A	3.268e^-5	0.903	INTRON Pka-C3
3R	14931218	3R_14931218_SNP [dm3] 3R_19105496_SNP [dm6]	C	G	3.300e^-5	0.903	INTRON CG6040
2L	7488818	2L_7488818_DEL [dm3] 2L_7488818_DEL [dm6]	CC	C	3.407e^-5	0.903	INTRON Ziz
2R	11618430	2R_11618430_SNP [dm3] 2R_15730925_SNP [dm6]	T	G	3.412e^-5	0.903	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11618438	2R_11618438_SNP [dm3] 2R_15730933_SNP [dm6]	T	A	3.412e^-5	0.903	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13153732	2L_13153732_SNP [dm3] 2L_13153732_SNP [dm6]	A	T	3.432e^-5	0.903	INTERGENIC
2R	15133782	2R_15133782_SNP [dm3] 2R_19246277_SNP [dm6]	C	A	3.470e^-5	0.903	INTERGENIC
2L	16491273	2L_16491273_SNP [dm3] 2L_16491273_SNP [dm6]	T	A	3.479e^-5	0.903	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	529575	2L_529575_SNP [dm3] 2L_529575_SNP [dm6]	A	T	3.514e^-5	0.903	INTRON ush	regulatory region REDfly_CRMs
3L	10202917	3L_10202917_SNP [dm3] 3L_10209817_SNP [dm6]	C	T	3.722e^-5	0.915	INTERGENIC
2L	16014807	2L_16014807_SNP [dm3] 2L_16014807_SNP [dm6]	C	G	3.855e^-5	0.915	INTRON beat-Ic
2L	13270305	2L_13270305_SNP [dm3] 2L_13270305_SNP [dm6]	A	T	3.861e^-5	0.915	INTRON CG44085
3R	3022803	3R_3022803_SNP [dm3] 3R_7197081_SNP [dm6]	G	A	3.991e^-5	0.915	INTRON lap	TF binding site BDTNP1_TFBS_dl
3L	13514722	3L_13514722_SNP [dm3] 3L_13521622_SNP [dm6]	A	G	4.270e^-5	0.915	DOWNSTREAM bru-3 INTERGENIC
3R	3992310	3R_3992310_SNP [dm3] 3R_8166588_SNP [dm6]	A	G	4.277e^-5	0.915	INTRON grn	TF binding site mE1_TFBS_chinmo
3R	13670915	3R_13670915_SNP [dm3] 3R_17845193_SNP [dm6]	C	T	4.305e^-5	0.915	INTRON tinc
2L	16415036	2L_16415036_SNP [dm3] 2L_16415036_SNP [dm6]	G	A	4.345e^-5	0.915	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13926725	3R_13926725_SNP [dm3] 3R_18101003_SNP [dm6]	G	T	4.480e^-5	0.915	INTRON sr
2R	16498223	2R_16498223_SNP [dm3] 2R_20610718_SNP [dm6]	T	G	4.757e^-5	0.915	INTRON Hil
2L	3176107	2L_3176107_SNP [dm3] 2L_3176107_SNP [dm6]	G	T	4.761e^-5	0.915	INTRON CG34393
3L	13224979	3L_13224979_SNP [dm3] 3L_13231879_SNP [dm6]	A	G	4.861e^-5	0.915	INTRON caps
2L	16415039	2L_16415039_SNP [dm3] 2L_16415039_SNP [dm6]	A	C	4.925e^-5	0.915	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8839015	2R_8839015_SNP [dm3] 2R_12951510_SNP [dm6]	G	A	4.956e^-5	0.915	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
2R	8839066	2R_8839066_SNP [dm3] 2R_12951561_SNP [dm6]	C	T	4.963e^-5	0.915	INTRON CG44251 & 1 other
X	17230634	X_17230634_SNP [dm3] X_17336601_SNP [dm6]	C	T	4.983e^-5	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9618671	3L_9618671_SNP [dm3] 3L_9625571_SNP [dm6]	T	C	5.031e^-5	0.915	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11214212	3L_11214212_SNP [dm3] 3L_11221112_SNP [dm6]	T	G	5.037e^-5	0.915	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	14067548	2L_14067548_SNP [dm3] 2L_14067548_SNP [dm6]	T	G	5.085e^-5	0.915	INTRON nAChRalpha5
2L	16415042	2L_16415042_SNP [dm3] 2L_16415042_SNP [dm6]	C	T	5.145e^-5	0.915	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4283689	3L_4283689_SNP [dm3] 3L_4283689_SNP [dm6]	A	C	5.160e^-5	0.915	UPSTREAM CG11583 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3465765	3L_3465765_SNP [dm3] 3L_3465765_SNP [dm6]	G	A	5.185e^-5	0.915	SYNONYMOUS_CODING armi UPSTREAM CycJ	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18621928	X_18621928_SNP [dm3] X_18727895_SNP [dm6]	T	A	5.225e^-5	0.915	INTERGENIC
3L	8799493	3L_8799493_SNP [dm3] 3L_8806393_SNP [dm6]	C	G	5.261e^-5	0.915	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	14067146	2L_14067146_SNP [dm3] 2L_14067146_SNP [dm6]	T	C	5.307e^-5	0.915	INTRON nAChRalpha5
3L	9618667	3L_9618667_SNP [dm3] 3L_9625567_SNP [dm6]	T	A	5.338e^-5	0.915	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15932485	3L_15932485_SNP [dm3] 3L_15939385_SNP [dm6]	T	C	5.349e^-5	0.915	INTRON Pka-C3
2R	7127599	2R_7127599_SNP [dm3] 2R_11240094_SNP [dm6]	T	A	5.500e^-5	0.915	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
X	10512188	X_10512188_SNP [dm3] X_10618155_SNP [dm6]	A	G	5.510e^-5	0.915	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11860303	3L_11860303_SNP [dm3] 3L_11867203_SNP [dm6]	T	G	5.575e^-5	0.915	INTRON CG44837
2L	14366958	2L_14366958_SNP [dm3] 2L_14366958_SNP [dm6]	T	G	5.647e^-5	0.915	DOWNSTREAM spel1 INTERGENIC
3L	12373199	3L_12373199_INS [dm3] 3L_12380099_INS [dm6]	A	ATACAGAATACAGAATACAG...	5.709e^-5	0.915	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13670890	3R_13670890_SNP [dm3] 3R_17845168_SNP [dm6]	T	G	5.723e^-5	0.915	INTRON tinc
2R	11680605	2R_11680605_SNP [dm3] 2R_15793100_SNP [dm6]	G	T	5.756e^-5	0.915	UPSTREAM tun INTRON Zasp52
3L	1962914	3L_1962914_SNP [dm3] 3L_1962914_SNP [dm6]	G	T	5.761e^-5	0.915	UTR_5_PRIME mv UPSTREAM SCOT
3L	9618694	3L_9618694_SNP [dm3] 3L_9625594_SNP [dm6]	A	G	5.812e^-5	0.915	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14804899	3R_14804899_SNP [dm3] 3R_18979177_SNP [dm6]	C	T	5.827e^-5	0.915	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
2R	4553550	2R_4553550_SNP [dm3] 2R_8666045_SNP [dm6]	C	A	5.866e^-5	0.915	UPSTREAM Acsl DOWNSTREAM ptc INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15429465	X_15429465_SNP [dm3] X_15535432_SNP [dm6]	A	C	5.904e^-5	0.915	INTRON Ac13E
X	16083112	X_16083112_SNP [dm3] X_16189079_SNP [dm6]	A	T	5.946e^-5	0.915	INTERGENIC
3R	3162934	3R_3162934_SNP [dm3] 3R_7337212_SNP [dm6]	C	T	6.022e^-5	0.915	INTERGENIC
3L	18846913	3L_18846913_SNP [dm3] 3L_18853813_SNP [dm6]	C	A	6.063e^-5	0.915	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8839017	2R_8839017_SNP [dm3] 2R_12951512_SNP [dm6]	C	T	6.065e^-5	0.915	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
X	3421142	X_3421142_SNP [dm3] X_3527109_SNP [dm6]	T	A	6.073e^-5	0.915	INTRON CG32791
2L	11586353	2L_11586353_SNP [dm3] 2L_11586353_SNP [dm6]	T	C	6.082e^-5	0.915	NON_SYNONYMOUS_CODING Mst33A SPLICE_SITE_REGION Mst33A INTRON kek2
3R	16226254	3R_16226254_SNP [dm3] 3R_20400532_SNP [dm6]	T	G	6.251e^-5	0.915	UTR_3_PRIME Gfrl INTRON Gfrl
3L	12749368	3L_12749368_SNP [dm3] 3L_12756268_SNP [dm6]	T	G	6.264e^-5	0.915	INTRON CG32113
3L	12374991	3L_12374991_SNP [dm3] 3L_12381891_SNP [dm6]	C	T	6.287e^-5	0.915	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	18023372	2L_18023372_SNP [dm3] 2L_18023372_SNP [dm6]	G	A	6.305e^-5	0.915	INTRON rdo
3R	12617160	3R_12617160_SNP [dm3] 3R_16791438_SNP [dm6]	C	T	6.387e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
3R	4164389	3R_4164389_SNP [dm3] 3R_8338667_SNP [dm6]	A	G	6.496e^-5	0.915	INTERGENIC
2R	11703045	2R_11703045_SNP [dm3] 2R_15815540_SNP [dm6]	A	T	6.555e^-5	0.915	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16083292	X_16083292_SNP [dm3] X_16189259_SNP [dm6]	G	A	6.573e^-5	0.915	INTERGENIC
3R	21243598	3R_21243598_SNP [dm3] 3R_25417876_SNP [dm6]	C	G	6.588e^-5	0.915	INTRON Fur1
3L	3983540	3L_3983540_SNP [dm3] 3L_3983540_SNP [dm6]	A	T	6.598e^-5	0.915	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9740666	3R_9740666_SNP [dm3] 3R_13914944_SNP [dm6]	T	G	6.625e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11103872	3R_11103872_SNP [dm3] 3R_15278150_SNP [dm6]	T	C	6.650e^-5	0.915	UTR_3_PRIME l_3_neo43 UPSTREAM MRG15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	13830850	X_13830850_SNP [dm3] X_13936817_SNP [dm6]	T	C	6.660e^-5	0.915	INTRON mamo
2R	8430884	2R_8430884_SNP [dm3] 2R_12543379_SNP [dm6]	A	G	6.834e^-5	0.915	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	4559741	X_4559741_SNP [dm3] X_4665708_SNP [dm6]	G	T	6.973e^-5	0.915	INTRON CG3009
X	4330885	X_4330885_SNP [dm3] X_4436852_SNP [dm6]	T	C	6.976e^-5	0.915	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9618688	3L_9618688_SNP [dm3] 3L_9625588_SNP [dm6]	A	C	7.096e^-5	0.915	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8535877	2R_8535877_SNP [dm3] 2R_12648372_SNP [dm6]	T	G	7.132e^-5	0.915	UPSTREAM CG8785 INTERGENIC
X	16083291	X_16083291_SNP [dm3] X_16189258_SNP [dm6]	T	G	7.169e^-5	0.915	INTERGENIC
3R	14884872	3R_14884872_SNP [dm3] 3R_19059150_SNP [dm6]	C	G	7.183e^-5	0.915	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16083306	X_16083306_SNP [dm3] X_16189273_SNP [dm6]	G	C	7.470e^-5	0.915	INTERGENIC
3L	13434682	3L_13434682_SNP [dm3] 3L_13441582_SNP [dm6]	T	G	7.488e^-5	0.915	INTRON CG14109	TF binding site mE1_TFBS_HSA
3L	7453864	3L_7453864_SNP [dm3] 3L_7460764_SNP [dm6]	A	G	7.517e^-5	0.915	INTERGENIC
3R	22355002	3R_22355002_DEL [dm3] 3R_26529280_DEL [dm6]	CGCAACA	C	7.613e^-5	0.915	INTRON plum
2R	6152982	2R_6152982_SNP [dm3] 2R_10265477_SNP [dm6]	C	T	7.666e^-5	0.915	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13846200	X_13846200_SNP [dm3] X_13952167_SNP [dm6]	T	C	7.760e^-5	0.915	INTRON mamo
2L	14067044	2L_14067044_SNP [dm3] 2L_14067044_SNP [dm6]	A	T	7.788e^-5	0.915	INTRON nAChRalpha5
3R	11209570	3R_11209570_SNP [dm3] 3R_15383848_SNP [dm6]	A	G	7.949e^-5	0.915	UPSTREAM h-cup INTRON Rbp
3R	16226604	3R_16226604_SNP [dm3] 3R_20400882_SNP [dm6]	C	T	8.006e^-5	0.915	UTR_3_PRIME Gfrl INTRON Gfrl
2R	15283492	2R_15283492_SNP [dm3] 2R_19395987_SNP [dm6]	C	T	8.009e^-5	0.915	UPSTREAM SdhA DOWNSTREAM cer INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12594035	3L_12594035_SNP [dm3] 3L_12600935_SNP [dm6]	A	G	8.033e^-5	0.915	INTERGENIC
3L	12378124	3L_12378124_SNP [dm3] 3L_12385024_SNP [dm6]	A	G	8.065e^-5	0.915	INTRON Ncc69
2R	11837094	2R_11837094_SNP [dm3] 2R_15949589_SNP [dm6]	T	G	8.072e^-5	0.915	INTRON Strn-Mlck
3L	20929773	3L_20929773_SNP [dm3] 3L_20936673_SNP [dm6]	C	T	8.077e^-5	0.915	SYNONYMOUS_CODING fng
2R	19653030	2R_19653030_SNP [dm3] 2R_23765507_SNP [dm6]	C	A	8.094e^-5	0.915	INTRON CG9850
2L	17539044	2L_17539044_SNP [dm3] 2L_17539044_SNP [dm6]	A	G	8.143e^-5	0.915	INTERGENIC
3R	25228946	3R_25228946_SNP [dm3] 3R_29403224_SNP [dm6]	G	T	8.171e^-5	0.915	INTRON Ptp99A
3L	10004259	3L_10004259_SNP [dm3] 3L_10011159_SNP [dm6]	A	G	8.336e^-5	0.915	INTRON dpr6
X	20038580	X_20038580_SNP [dm3] X_20144547_SNP [dm6]	G	A	8.684e^-5	0.915	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12344856	2L_12344856_SNP [dm3] 2L_12344856_SNP [dm6]	A	T	8.690e^-5	0.915	UPSTREAM CG43813 INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	3176106	2L_3176106_SNP [dm3] 2L_3176106_SNP [dm6]	A	G	8.702e^-5	0.915	INTRON CG34393
X	8813199	X_8813199_INS [dm3] X_8919166_INS [dm6]	G	GAG	8.704e^-5	0.915	DOWNSTREAM CR44111 INTRON rdgA
3R	17159818	3R_17159818_SNP [dm3] 3R_21334096_SNP [dm6]	G	C	8.772e^-5	0.915	INTRON CG16791
3R	8759624	3R_8759624_SNP [dm3] 3R_12933902_SNP [dm6]	C	T	8.925e^-5	0.915	INTRON beat-Vb
3R	14804668	3R_14804668_SNP [dm3] 3R_18978946_SNP [dm6]	G	A	8.935e^-5	0.915	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2L	17500800	2L_17500800_SNP [dm3] 2L_17500800_SNP [dm6]	G	A	9.000e^-5	0.915	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	13327635	2L_13327635_SNP [dm3] 2L_13327635_SNP [dm6]	T	C	9.012e^-5	0.915	INTRON CG43778
3R	11309752	3R_11309752_SNP [dm3] 3R_15484030_SNP [dm6]	G	T	9.169e^-5	0.915	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin	TF binding site mE1_TFBS_chinmo
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	9.173e^-5	0.915	INTRON nwk
2R	17575278	2R_17575278_SNP [dm3] 2R_21687773_SNP [dm6]	G	T	9.215e^-5	0.915	UPSTREAM Tbp & 1 other DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16391981	2L_16391981_SNP [dm3] 2L_16391981_SNP [dm6]	G	A	9.260e^-5	0.915	INTERGENIC
2R	11837097	2R_11837097_INS [dm3] 2R_15949592_INS [dm6]	G	AGA	9.282e^-5	0.915	INTRON Strn-Mlck
2L	1722348	2L_1722348_SNP [dm3] 2L_1722348_SNP [dm6]	A	G	9.296e^-5	0.915	INTRON Rim2
2R	18156587	2R_18156587_SNP [dm3] 2R_22269082_SNP [dm6]	C	T	9.333e^-5	0.915	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14342424	2R_14342424_SNP [dm3] 2R_18454919_SNP [dm6]	T	C	9.436e^-5	0.915	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12007433	3L_12007433_SNP [dm3] 3L_12014333_SNP [dm6]	A	T	9.462e^-5	0.915	INTRON rols
2L	13151164	2L_13151164_SNP [dm3] 2L_13151164_SNP [dm6]	G	T	9.540e^-5	0.915	INTERGENIC
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	9.643e^-5	0.915	INTRON CG31221
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	9.645e^-5	0.915	INTRON Cht7
3R	11309739	3R_11309739_SNP [dm3] 3R_15484017_SNP [dm6]	C	T	9.684e^-5	0.915	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin	TF binding site mE1_TFBS_chinmo
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	9.738e^-5	0.915	INTRON CG7781
2R	14342464	2R_14342464_SNP [dm3] 2R_18454959_SNP [dm6]	A	T	9.742e^-5	0.915	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9617990	3L_9617990_SNP [dm3] 3L_9624890_SNP [dm6]	A	G	9.745e^-5	0.915	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4678668	3R_4678668_SNP [dm3] 3R_8852946_SNP [dm6]	C	T	9.902e^-5	0.915	INTRON pyd
X	11872943	X_11872943_SNP [dm3] X_11978910_SNP [dm6]	G	A	9.957e^-5	0.915	INTRON cac
3L	11196758	3L_11196758_SNP [dm3] 3L_11203658_SNP [dm6]	G	C	9.975e^-5	0.915	SYNONYMOUS_CODING Plod
2L	13931945	2L_13931945_SNP [dm3] 2L_13931945_SNP [dm6]	A	C	1.005e^-4	0.915	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	3011923	3R_3011923_SNP [dm3] 3R_7186201_SNP [dm6]	G	A	1.009e^-4	0.915	SYNONYMOUS_CODING CG10055 UPSTREAM lap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17536244	2L_17536244_SNP [dm3] 2L_17536244_SNP [dm6]	A	C	1.012e^-4	0.915	INTERGENIC
3L	16409546	3L_16409546_SNP [dm3] 3L_16416446_SNP [dm6]	C	A	1.014e^-4	0.915	SYNONYMOUS_CODING CG4573 DOWNSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9772912	2R_9772912_SNP [dm3] 2R_13885407_SNP [dm6]	C	T	1.017e^-4	0.915	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4762621	2R_4762621_SNP [dm3] 2R_8875116_SNP [dm6]	T	A	1.019e^-4	0.915	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19390320	2L_19390320_SNP [dm3] 2L_19390320_SNP [dm6]	G	A	1.029e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
3L	9619800	3L_9619800_SNP [dm3] 3L_9626700_SNP [dm6]	G	A	1.040e^-4	0.915	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
2L	8741093	2L_8741093_SNP [dm3] 2L_8741093_SNP [dm6]	T	G	1.049e^-4	0.915	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	12379802	3L_12379802_SNP [dm3] 3L_12386702_SNP [dm6]	C	A	1.050e^-4	0.915	INTRON Ncc69	TF binding site mE1_TFBS_cnc
3R	17774091	3R_17774091_SNP [dm3] 3R_21948369_SNP [dm6]	G	A	1.054e^-4	0.915	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15063861	2R_15063861_SNP [dm3] 2R_19176356_SNP [dm6]	C	T	1.059e^-4	0.915	INTRON CG10737
2L	14601513	2L_14601513_INS [dm3] 2L_14601513_INS [dm6]	T	TG	1.063e^-4	0.915	INTRON osp	TF binding site mE1_TFBS_HSA
3L	2376490	3L_2376490_SNP [dm3] 3L_2376490_SNP [dm6]	G	A	1.080e^-4	0.915	UTR_3_PRIME CG15877 DOWNSTREAM CG9004
2L	19390239	2L_19390239_SNP [dm3] 2L_19390239_SNP [dm6]	A	G	1.083e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
3L	3022152	3L_3022152_SNP [dm3] 3L_3022152_SNP [dm6]	A	T	1.087e^-4	0.915	INTERGENIC
2L	19390312	2L_19390312_SNP [dm3] 2L_19390312_SNP [dm6]	T	A	1.089e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
3L	14061266	3L_14061266_SNP [dm3] 3L_14068166_SNP [dm6]	G	A	1.091e^-4	0.915	INTRON CG32138
3R	835564	3R_835564_SNP [dm3] 3R_5009842_SNP [dm6]	T	C	1.106e^-4	0.915	INTRON CG2022
2L	13131678	2L_13131678_SNP [dm3] 2L_13131678_SNP [dm6]	G	C	1.108e^-4	0.915	NON_SYNONYMOUS_CODING CG5122
X	16083294	X_16083294_DEL [dm3] X_16189261_DEL [dm6]	CATTTAA	AGG	1.117e^-4	0.915	INTERGENIC
X	9778089	X_9778089_SNP [dm3] X_9884056_SNP [dm6]	T	C	1.119e^-4	0.915	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
3R	8575841	3R_8575841_SNP [dm3] 3R_12750119_SNP [dm6]	T	G	1.119e^-4	0.915	INTRON beat-Vc
3R	12614690	3R_12614690_SNP [dm3] 3R_16788968_SNP [dm6]	T	G	1.120e^-4	0.915	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20978157	3R_20978157_SNP [dm3] 3R_25152435_SNP [dm6]	T	G	1.121e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2173918	3R_2173918_SNP [dm3] 3R_6348196_SNP [dm6]	A	G	1.125e^-4	0.915	DOWNSTREAM CG18048 INTERGENIC
3R	23772117	3R_23772117_SNP [dm3] 3R_27946395_SNP [dm6]	C	A	1.130e^-4	0.915	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18989446	2R_18989446_SNP [dm3] 2R_23101923_SNP [dm6]	A	C	1.130e^-4	0.915	UPSTREAM CG42703 DOWNSTREAM Gr59c INTERGENIC
2R	13904780	2R_13904780_SNP [dm3] 2R_18017275_SNP [dm6]	T	A	1.133e^-4	0.915	INTERGENIC
3R	13669618	3R_13669618_SNP [dm3] 3R_17843896_SNP [dm6]	T	C	1.135e^-4	0.915	INTRON tinc
3L	18307752	3L_18307752_SNP [dm3] 3L_18314652_SNP [dm6]	G	A	1.135e^-4	0.915	INTERGENIC
2L	9980894	2L_9980894_SNP [dm3] 2L_9980894_SNP [dm6]	G	T	1.137e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	1.153e^-4	0.915	INTRON nwk
2L	16491101	2L_16491101_DEL [dm3] 2L_16491101_DEL [dm6]	TT	T	1.157e^-4	0.915	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_Ubx
3L	3983557	3L_3983557_SNP [dm3] 3L_3983557_SNP [dm6]	G	C	1.173e^-4	0.915	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12594041	3L_12594041_SNP [dm3] 3L_12600941_SNP [dm6]	A	C	1.175e^-4	0.915	INTERGENIC
3R	16230634	3R_16230634_SNP [dm3] 3R_20404912_SNP [dm6]	C	G	1.177e^-4	0.915	INTRON Gfrl
2L	14483908	2L_14483908_SNP [dm3] 2L_14483908_SNP [dm6]	T	A	1.177e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	15932387	3L_15932387_SNP [dm3] 3L_15939287_SNP [dm6]	C	T	1.178e^-4	0.915	INTRON Pka-C3
2L	17093226	2L_17093226_SNP [dm3] 2L_17093226_SNP [dm6]	G	C	1.185e^-4	0.915	INTERGENIC
X	8901421	X_8901421_SNP [dm3] X_9007388_SNP [dm6]	G	A	1.186e^-4	0.915	INTRON rdgA & 1 other
2L	18238849	2L_18238849_SNP [dm3] 2L_18238849_SNP [dm6]	A	T	1.190e^-4	0.915	INTRON CG42750
2R	9783526	2R_9783526_SNP [dm3] 2R_13896021_SNP [dm6]	A	G	1.192e^-4	0.915	INTRON shot
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	1.193e^-4	0.915	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14550680	2L_14550680_SNP [dm3] 2L_14550680_SNP [dm6]	T	C	1.193e^-4	0.915	EXON CR44853	TF binding site BDTNP1_TFBS_twi
2R	8430840	2R_8430840_SNP [dm3] 2R_12543335_SNP [dm6]	T	C	1.196e^-4	0.915	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12594045	3L_12594045_SNP [dm3] 3L_12600945_SNP [dm6]	T	A	1.198e^-4	0.915	INTERGENIC
X	16083141	X_16083141_SNP [dm3] X_16189108_SNP [dm6]	A	G	1.198e^-4	0.915	INTERGENIC
2L	4454065	2L_4454065_SNP [dm3] 2L_4454065_SNP [dm6]	A	G	1.200e^-4	0.915	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9618011	3L_9618011_SNP [dm3] 3L_9624911_SNP [dm6]	G	C	1.200e^-4	0.915	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9398385	2L_9398385_SNP [dm3] 2L_9398385_SNP [dm6]	C	A	1.207e^-4	0.915	UPSTREAM CG4438 INTRON Shawl
X	4210127	X_4210127_SNP [dm3] X_4316094_SNP [dm6]	G	C	1.207e^-4	0.915	SYNONYMOUS_CODING mei-9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25221550	3R_25221550_SNP [dm3] 3R_29395828_SNP [dm6]	C	T	1.211e^-4	0.915	INTRON Ptp99A
3L	9321913	3L_9321913_SNP [dm3] 3L_9328813_SNP [dm6]	G	A	1.214e^-4	0.915	INTERGENIC
2L	13171424	2L_13171424_SNP [dm3] 2L_13171424_SNP [dm6]	C	G	1.218e^-4	0.915	SYNONYMOUS_CODING Sfmbt
2L	7278033	2L_7278033_SNP [dm3] 2L_7278033_SNP [dm6]	C	T	1.220e^-4	0.915	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	18737094	2L_18737094_SNP [dm3] 2L_18737094_SNP [dm6]	G	A	1.224e^-4	0.915	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14045671	2L_14045671_SNP [dm3] 2L_14045671_SNP [dm6]	A	G	1.224e^-4	0.915	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	5611511	2L_5611511_SNP [dm3] 2L_5611511_SNP [dm6]	G	T	1.229e^-4	0.915	INTRON CG14010
3R	22354819	3R_22354819_SNP [dm3] 3R_26529097_SNP [dm6]	G	A	1.244e^-4	0.915	INTRON plum
3L	12749342	3L_12749342_SNP [dm3] 3L_12756242_SNP [dm6]	G	T	1.246e^-4	0.915	INTRON CG32113
2L	7278031	2L_7278031_SNP [dm3] 2L_7278031_SNP [dm6]	A	T	1.246e^-4	0.915	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	18204994	3L_18204994_SNP [dm3] 3L_18211894_SNP [dm6]	A	T	1.247e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cnc
X	2598584	X_2598584_SNP [dm3] X_2704551_SNP [dm6]	C	A	1.249e^-4	0.915	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3R	5126714	3R_5126714_SNP [dm3] 3R_9300992_SNP [dm6]	C	T	1.251e^-4	0.915	INTRON CG8861
2L	21854856	2L_21854856_SNP [dm3] 2L_21854856_SNP [dm6]	A	G	1.256e^-4	0.915	UPSTREAM CR44917 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13131407	2L_13131407_SNP [dm3] 2L_13131407_SNP [dm6]	A	C	1.265e^-4	0.915	NON_SYNONYMOUS_CODING CG5122
X	20402636	X_20402636_DEL [dm3] X_20531609_DEL [dm6]	TTTA	C	1.272e^-4	0.915	INTERGENIC
2L	2229426	2L_2229426_SNP [dm3] 2L_2229426_SNP [dm6]	C	T	1.284e^-4	0.915	INTRON rti
3L	19602236	3L_19602236_SNP [dm3] 3L_19609136_SNP [dm6]	G	C	1.291e^-4	0.915	SYNONYMOUS_CODING Lon DOWNSTREAM CG9372	TF binding site mE1_TFBS_cad
2R	8843329	2R_8843329_SNP [dm3] 2R_12955824_SNP [dm6]	A	G	1.292e^-4	0.915	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	12709981	2L_12709981_SNP [dm3] 2L_12709981_SNP [dm6]	C	A	1.315e^-4	0.915	SYNONYMOUS_CODING CG5787	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20904293	3L_20904293_DEL [dm3] 3L_20911193_DEL [dm6]	AACTATTTAAATTTTAAT...	A	1.321e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9895737	3R_9895737_DEL [dm3] 3R_14070015_DEL [dm6]	AA	A	1.328e^-4	0.915	INTRON foxo
3L	3316104	3L_3316104_SNP [dm3] 3L_3316104_SNP [dm6]	A	T	1.330e^-4	0.915	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	2784442	X_2784442_SNP [dm3] X_2890409_SNP [dm6]	G	A	1.336e^-4	0.915	UPSTREAM CG3526 INTRON kirre
X	17949115	X_17949115_SNP [dm3] X_18055082_SNP [dm6]	G	T	1.345e^-4	0.915	INTRON Sh
3R	25039384	3R_25039384_SNP [dm3] 3R_29213662_SNP [dm6]	A	T	1.350e^-4	0.915	UPSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	1673858	2R_1673858_SNP [dm3] 2R_5786353_SNP [dm6]	A	G	1.370e^-4	0.915	INTERGENIC	transposable element FlyBase
2L	10592811	2L_10592811_SNP [dm3] 2L_10592811_SNP [dm6]	G	A	1.372e^-4	0.915	INTRON Trim9
3R	17311899	3R_17311899_SNP [dm3] 3R_21486177_SNP [dm6]	A	G	1.374e^-4	0.915	SYNONYMOUS_CODING CG7922
2L	20550285	2L_20550285_SNP [dm3] 2L_20550285_SNP [dm6]	G	A	1.375e^-4	0.915	INTERGENIC
2L	14483832	2L_14483832_SNP [dm3] 2L_14483832_SNP [dm6]	C	T	1.377e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	14924296	2L_14924296_SNP [dm3] 2L_14924296_SNP [dm6]	G	A	1.378e^-4	0.915	UPSTREAM CG3491 INTRON CG42313
2L	17537815	2L_17537815_SNP [dm3] 2L_17537815_SNP [dm6]	A	G	1.393e^-4	0.915	INTERGENIC
2R	19901627	2R_19901627_SNP [dm3] 2R_24014104_SNP [dm6]	C	T	1.395e^-4	0.915	UTR_5_PRIME Unc-89 DOWNSTREAM CG4324
3R	7989883	3R_7989883_SNP [dm3] 3R_12164161_SNP [dm6]	G	C	1.398e^-4	0.915	NON_SYNONYMOUS_CODING Cpn
3R	24823097	3R_24823097_SNP [dm3] 3R_28997375_SNP [dm6]	T	G	1.405e^-4	0.915	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	941354	2L_941354_SNP [dm3] 2L_941354_SNP [dm6]	T	C	1.405e^-4	0.915	INTRON CG4341
2R	8430672	2R_8430672_SNP [dm3] 2R_12543167_SNP [dm6]	C	T	1.408e^-4	0.915	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17881279	3R_17881279_SNP [dm3] 3R_22055557_SNP [dm6]	G	A	1.413e^-4	0.915	INTRON how
2L	1199438	2L_1199438_SNP [dm3] 2L_1199438_SNP [dm6]	C	T	1.416e^-4	0.915	START_GAINED CG43348 UTR_5_PRIME CG43348 UPSTREAM CG43349 & 1 other
3L	9618364	3L_9618364_SNP [dm3] 3L_9625264_SNP [dm6]	T	C	1.429e^-4	0.915	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6880653	3R_6880653_SNP [dm3] 3R_11054931_SNP [dm6]	C	A	1.448e^-4	0.915	INTERGENIC
3R	12617184	3R_12617184_SNP [dm3] 3R_16791462_SNP [dm6]	C	T	1.452e^-4	0.915	INTERGENIC
3R	17356312	3R_17356312_SNP [dm3] 3R_21530590_SNP [dm6]	T	A	1.462e^-4	0.915	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20884921	2L_20884921_SNP [dm3] 2L_20884921_SNP [dm6]	A	C	1.464e^-4	0.915	INTRON sky & 1 other
2L	18238810	2L_18238810_SNP [dm3] 2L_18238810_SNP [dm6]	G	A	1.466e^-4	0.915	INTRON CG42750
3R	6880347	3R_6880347_DEL [dm3] 3R_11054625_DEL [dm6]	TTTATTTTGTCCATTCACAC...	T	1.469e^-4	0.915	INTERGENIC
3R	2982582	3R_2982582_SNP [dm3] 3R_7156860_SNP [dm6]	A	T	1.469e^-4	0.915	INTERGENIC
2L	6801286	2L_6801286_SNP [dm3] 2L_6801286_SNP [dm6]	C	T	1.484e^-4	0.915	UPSTREAM CG17376 DOWNSTREAM CG17377 INTERGENIC	regulatory region REDfly_CRMs
2L	6772960	2L_6772960_INS [dm3] 2L_6772960_INS [dm6]	T	TT	1.486e^-4	0.915	UPSTREAM CG11321 INTERGENIC
3L	13913757	3L_13913757_INS [dm3] 3L_13920657_INS [dm6]	C	CCAC	1.487e^-4	0.915	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14342417	2R_14342417_SNP [dm3] 2R_18454912_SNP [dm6]	A	T	1.490e^-4	0.915	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
3R	20593915	3R_20593915_SNP [dm3] 3R_24768193_SNP [dm6]	A	G	1.497e^-4	0.915	EXON CR45650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	23147348	3L_23147348_SNP [dm3] 3L_23154248_SNP [dm6]	A	G	1.497e^-4	0.915	INTERGENIC	transposable element FlyBase
2R	14342418	2R_14342418_SNP [dm3] 2R_18454913_SNP [dm6]	C	T	1.499e^-4	0.915	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
X	18437906	X_18437906_SNP [dm3] X_18543873_SNP [dm6]	T	A	1.503e^-4	0.915	INTRON Bx
2L	12334685	2L_12334685_SNP [dm3] 2L_12334685_SNP [dm6]	A	G	1.504e^-4	0.915	INTERGENIC
2R	11836227	2R_11836227_SNP [dm3] 2R_15948722_SNP [dm6]	G	A	1.516e^-4	0.915	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1332778	3L_1332778_SNP [dm3] 3L_1332778_SNP [dm6]	G	A	1.516e^-4	0.915	SYNONYMOUS_CODING msd5 DOWNSTREAM CG2211 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11963977	2R_11963977_MNP [dm3] 2R_16076472_MNP [dm6]	GTA	TAC	1.524e^-4	0.915	INTERGENIC
X	20523456	X_20523456_SNP [dm3] X_20652429_SNP [dm6]	G	T	1.528e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6359640	2R_6359640_SNP [dm3] 2R_10472135_SNP [dm6]	T	C	1.530e^-4	0.915	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_inv
2R	8838415	2R_8838415_SNP [dm3] 2R_12950910_SNP [dm6]	G	A	1.535e^-4	0.915	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1602222	2R_1602222_SNP [dm3] 2R_5714717_SNP [dm6]	C	A	1.535e^-4	0.915	INTRON ap
3R	16195128	3R_16195128_SNP [dm3] 3R_20369406_SNP [dm6]	G	A	1.537e^-4	0.915	INTERGENIC
3R	21395688	3R_21395688_SNP [dm3] 3R_25569966_SNP [dm6]	C	T	1.545e^-4	0.915	INTRON msi
2L	17516348	2L_17516348_SNP [dm3] 2L_17516348_SNP [dm6]	G	A	1.548e^-4	0.915	INTRON Dhc36C
2L	17517949	2L_17517949_SNP [dm3] 2L_17517949_SNP [dm6]	A	G	1.548e^-4	0.915	INTRON Dhc36C	TF binding site mE1_TFBS_cad
3R	8575903	3R_8575903_SNP [dm3] 3R_12750181_SNP [dm6]	A	G	1.548e^-4	0.915	INTRON beat-Vc
3L	13693668	3L_13693668_SNP [dm3] 3L_13700568_SNP [dm6]	C	T	1.555e^-4	0.915	INTRON bru-3
3L	9618020	3L_9618020_SNP [dm3] 3L_9624920_SNP [dm6]	G	A	1.556e^-4	0.915	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6882258	3R_6882258_SNP [dm3] 3R_11056536_SNP [dm6]	G	T	1.556e^-4	0.915	INTERGENIC
2R	18737340	2R_18737340_SNP [dm3] 2R_22849817_SNP [dm6]	C	A	1.561e^-4	0.915	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
3L	5263800	3L_5263800_SNP [dm3] 3L_5270700_SNP [dm6]	A	T	1.568e^-4	0.915	INTRON shep
3L	19411763	3L_19411763_SNP [dm3] 3L_19418663_SNP [dm6]	T	A	1.571e^-4	0.915	INTERGENIC
3R	14804892	3R_14804892_SNP [dm3] 3R_18979170_SNP [dm6]	T	A	1.583e^-4	0.915	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
3R	14804893	3R_14804893_SNP [dm3] 3R_18979171_SNP [dm6]	A	C	1.583e^-4	0.915	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
3L	13693788	3L_13693788_SNP [dm3] 3L_13700688_SNP [dm6]	C	T	1.589e^-4	0.915	INTRON bru-3
3L	12717521	3L_12717521_SNP [dm3] 3L_12724421_SNP [dm6]	T	A	1.604e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18386696	3L_18386696_SNP [dm3] 3L_18393596_SNP [dm6]	T	C	1.609e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16493056	3R_16493056_SNP [dm3] 3R_20667334_SNP [dm6]	T	A	1.613e^-4	0.915	INTERGENIC
3R	6880345	3R_6880345_SNP [dm3] 3R_11054623_SNP [dm6]	A	G	1.619e^-4	0.915	INTERGENIC
2R	4791695	2R_4791695_SNP [dm3] 2R_8904190_SNP [dm6]	G	A	1.629e^-4	0.915	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258
3R	15468330	3R_15468330_SNP [dm3] 3R_19642608_SNP [dm6]	G	A	1.631e^-4	0.915	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22182286	3R_22182286_SNP [dm3] 3R_26356564_SNP [dm6]	G	A	1.645e^-4	0.915	INTRON CG33970
2L	14559499	2L_14559499_SNP [dm3] 2L_14559499_SNP [dm6]	T	A	1.660e^-4	0.915	UPSTREAM CR44854 INTERGENIC
2L	11272319	2L_11272319_SNP [dm3] 2L_11272319_SNP [dm6]	A	G	1.663e^-4	0.915	INTRON cana	TF binding site mE1_TFBS_Trl
3L	3098955	3L_3098955_SNP [dm3] 3L_3098955_SNP [dm6]	G	A	1.667e^-4	0.915	INTRON Cht7
3R	25381175	3R_25381175_SNP [dm3] 3R_29555453_SNP [dm6]	C	T	1.688e^-4	0.915	UPSTREAM Dr INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17335720	3R_17335720_SNP [dm3] 3R_21509998_SNP [dm6]	T	G	1.692e^-4	0.915	INTRON C15	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14487650	2L_14487650_SNP [dm3] 2L_14487650_SNP [dm6]	T	C	1.701e^-4	0.915	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15245823	3R_15245823_SNP [dm3] 3R_19420101_SNP [dm6]	C	T	1.704e^-4	0.915	INTRON CG31221
3R	16486121	3R_16486121_SNP [dm3] 3R_20660399_SNP [dm6]	G	T	1.713e^-4	0.915	UPSTREAM Nep4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	9778104	X_9778104_SNP [dm3] X_9884071_SNP [dm6]	C	G	1.713e^-4	0.915	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
2R	1681113	2R_1681113_SNP [dm3] 2R_5793608_SNP [dm6]	A	C	1.725e^-4	0.915	UPSTREAM Or42a INTERGENIC	transposable element FlyBase
3L	3874255	3L_3874255_SNP [dm3] 3L_3874255_SNP [dm6]	G	A	1.727e^-4	0.915	INTERGENIC
X	8986871	X_8986871_SNP [dm3] X_9092838_SNP [dm6]	C	G	1.733e^-4	0.915	DOWNSTREAM CG7766 & 1 other INTERGENIC
3L	5229848	3L_5229848_SNP [dm3] 3L_5236748_SNP [dm6]	G	C	1.735e^-4	0.915	DOWNSTREAM CG4669 INTRON shep
3R	6683786	3R_6683786_SNP [dm3] 3R_10858064_SNP [dm6]	T	C	1.740e^-4	0.915	UTR_3_PRIME CG4570 DOWNSTREAM CG14694	TF binding site BDTNP1_TFBS_dl
2L	12286722	2L_12286722_SNP [dm3] 2L_12286722_SNP [dm6]	T	A	1.745e^-4	0.915	UPSTREAM aret INTRON aret
X	4634312	X_4634312_SNP [dm3] X_4740279_SNP [dm6]	T	C	1.746e^-4	0.915	INTERGENIC
3L	10215594	3L_10215594_SNP [dm3] 3L_10222494_SNP [dm6]	C	T	1.761e^-4	0.915	INTRON scramb1
3L	10954067	3L_10954067_INS [dm3] 3L_10960967_INS [dm6]	C	CTTTTTGC	1.765e^-4	0.915	UPSTREAM CR45249 DOWNSTREAM CR45248 INTERGENIC
3R	20800563	3R_20800563_SNP [dm3] 3R_24974841_SNP [dm6]	C	T	1.768e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2643260	2L_2643260_SNP [dm3] 2L_2643260_SNP [dm6]	C	A	1.768e^-4	0.915	INTERGENIC
2L	20068433	2L_20068433_DEL [dm3] 2L_20068433_DEL [dm6]	TT	T	1.780e^-4	0.915	DOWNSTREAM CR44907 INTRON bwa
3R	12616968	3R_12616968_SNP [dm3] 3R_16791246_SNP [dm6]	G	A	1.781e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15133624	2R_15133624_SNP [dm3] 2R_19246119_SNP [dm6]	C	A	1.785e^-4	0.915	INTERGENIC
2L	14506636	2L_14506636_SNP [dm3] 2L_14506636_SNP [dm6]	C	A	1.788e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15911409	3L_15911409_SNP [dm3] 3L_15918309_SNP [dm6]	A	G	1.791e^-4	0.915	INTRON sff
3R	15071260	3R_15071260_DEL [dm3] 3R_19245538_DEL [dm6]	CTATAGA	T	1.795e^-4	0.915	SPLICE_SITE_REGION unc79 INTRON unc79
2R	4505066	2R_4505066_SNP [dm3] 2R_8617561_SNP [dm6]	A	T	1.800e^-4	0.915	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10400558	2L_10400558_SNP [dm3] 2L_10400558_SNP [dm6]	G	A	1.803e^-4	0.915	SYNONYMOUS_CODING Cnot4
3R	22881444	3R_22881444_SNP [dm3] 3R_27055722_SNP [dm6]	C	T	1.807e^-4	0.915	INTRON RYa-R
2R	19634104	2R_19634104_SNP [dm3] 2R_23746581_SNP [dm6]	G	A	1.814e^-4	0.915	UTR_5_PRIME egl UPSTREAM CG13560	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	12771383	2R_12771383_SNP [dm3] 2R_16883878_SNP [dm6]	A	C	1.818e^-4	0.915	SPLICE_SITE_REGION CG6472 INTRON CG8910 & 1 other
2L	21878410	2L_21878410_SNP [dm3] 2L_21878410_SNP [dm6]	T	A	1.822e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	3874217	3L_3874217_SNP [dm3] 3L_3874217_SNP [dm6]	A	T	1.823e^-4	0.915	INTERGENIC
X	17949114	X_17949114_SNP [dm3] X_18055081_SNP [dm6]	G	T	1.824e^-4	0.915	INTRON Sh
3L	6757792	3L_6757792_SNP [dm3] 3L_6764692_SNP [dm6]	T	C	1.829e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	14242399	3L_14242399_SNP [dm3] 3L_14249299_SNP [dm6]	T	C	1.832e^-4	0.915	INTERGENIC
X	2750282	X_2750282_SNP [dm3] X_2856249_SNP [dm6]	A	G	1.839e^-4	0.915	INTRON kirre
X	7604917	X_7604917_SNP [dm3] X_7710884_SNP [dm6]	C	A	1.844e^-4	0.915	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13176383	3L_13176383_SNP [dm3] 3L_13183283_SNP [dm6]	A	C	1.846e^-4	0.915	INTERGENIC
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	1.846e^-4	0.915	UPSTREAM CG10597 INTERGENIC
2L	11383389	2L_11383389_SNP [dm3] 2L_11383389_SNP [dm6]	G	T	1.855e^-4	0.915	INTERGENIC	regulatory region REDfly_CRMs
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	1.862e^-4	0.915	UPSTREAM CG10597 INTERGENIC
2R	13865333	2R_13865333_SNP [dm3] 2R_17977828_SNP [dm6]	A	G	1.863e^-4	0.915	INTRON dpr13
3R	10408136	3R_10408136_SNP [dm3] 3R_14582414_SNP [dm6]	C	T	1.869e^-4	0.915	INTRON stumps
2R	19649520	2R_19649520_SNP [dm3] 2R_23761997_SNP [dm6]	A	T	1.871e^-4	0.915	INTRON CG9850
2L	14575744	2L_14575744_SNP [dm3] 2L_14575744_SNP [dm6]	A	C	1.874e^-4	0.915	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10079342	2L_10079342_SNP [dm3] 2L_10079342_SNP [dm6]	A	G	1.875e^-4	0.915	INTRON CG44153
3R	15468443	3R_15468443_SNP [dm3] 3R_19642721_SNP [dm6]	A	G	1.889e^-4	0.915	UTR_5_PRIME subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6880702	3R_6880702_SNP [dm3] 3R_11054980_SNP [dm6]	T	A	1.893e^-4	0.915	INTERGENIC
2L	12206796	2L_12206796_SNP [dm3] 2L_12206796_SNP [dm6]	C	G	1.897e^-4	0.915	UPSTREAM CG31759 INTRON aret
X	8426830	X_8426830_SNP [dm3] X_8532797_SNP [dm6]	G	A	1.900e^-4	0.915	INTRON Nrg
2L	17431606	2L_17431606_SNP [dm3] 2L_17431606_SNP [dm6]	C	A	1.908e^-4	0.915	INTRON Dif
3R	5126804	3R_5126804_DEL [dm3] 3R_9301082_DEL [dm6]	ACATTACATT	A	1.913e^-4	0.915	INTRON CG8861
3R	24137045	3R_24137045_SNP [dm3] 3R_28311323_SNP [dm6]	G	A	1.913e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	6880886	3R_6880886_SNP [dm3] 3R_11055164_SNP [dm6]	G	A	1.926e^-4	0.915	INTERGENIC
3R	4047208	3R_4047208_SNP [dm3] 3R_8221486_SNP [dm6]	C	T	1.929e^-4	0.915	NON_SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_sens
3L	9619790	3L_9619790_SNP [dm3] 3L_9626690_SNP [dm6]	T	G	1.934e^-4	0.915	SPLICE_SITE_REGION CG3335 DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
3L	3990950	3L_3990950_INS [dm3] 3L_3990950_INS [dm6]	T	TT	1.948e^-4	0.915	UTR_3_PRIME scrt
2R	8839613	2R_8839613_SNP [dm3] 2R_12952108_SNP [dm6]	T	G	1.950e^-4	0.915	INTRON CG44251 & 1 other
2L	6051480	2L_6051480_DEL [dm3] 2L_6051480_DEL [dm6]	TTCCT	T	1.955e^-4	0.915	INTRON CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9890355	3L_9890355_DEL [dm3] 3L_9897255_DEL [dm6]	CA	C	1.959e^-4	0.915	UPSTREAM CG6707 INTRON CG6707	TF binding site mE1_TFBS_cad
X	17230586	X_17230586_SNP [dm3] X_17336553_SNP [dm6]	T	A	1.968e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11963975	2R_11963975_SNP [dm3] 2R_16076470_SNP [dm6]	T	C	1.973e^-4	0.915	INTERGENIC
3L	10113208	3L_10113208_SNP [dm3] 3L_10120108_SNP [dm6]	G	A	1.979e^-4	0.915	INTRON dpr6
2L	676582	2L_676582_SNP [dm3] 2L_676582_SNP [dm6]	A	G	1.983e^-4	0.915	INTRON ds
2R	3006347	2R_3006347_SNP [dm3] 2R_7118842_SNP [dm6]	C	T	1.994e^-4	0.915	NON_SYNONYMOUS_CODING esn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8724575	2R_8724575_SNP [dm3] 2R_12837070_SNP [dm6]	G	A	1.994e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4588563	3L_4588563_SNP [dm3] 3L_4588563_SNP [dm6]	C	G	2.000e^-4	0.915	INTRON CG42540
2L	13633495	2L_13633495_SNP [dm3] 2L_13633495_SNP [dm6]	C	T	2.005e^-4	0.915	SYNONYMOUS_CODING kuz UPSTREAM CR43410	TF binding site BDTNP1_TFBS_twi
3L	17582187	3L_17582187_SNP [dm3] 3L_17589087_SNP [dm6]	T	A	2.015e^-4	0.915	INTRON Eip74EF
3R	25179147	3R_25179147_SNP [dm3] 3R_29353425_SNP [dm6]	A	G	2.026e^-4	0.915	INTERGENIC
3R	8575935	3R_8575935_SNP [dm3] 3R_12750213_SNP [dm6]	A	T	2.034e^-4	0.915	INTRON beat-Vc
X	6455046	X_6455046_SNP [dm3] X_6561013_SNP [dm6]	G	A	2.035e^-4	0.915	NON_SYNONYMOUS_CODING CG34417
2R	19386806	2R_19386806_SNP [dm3] 2R_23499283_SNP [dm6]	C	A	2.037e^-4	0.915	UPSTREAM CG13558 INTERGENIC
3R	22312685	3R_22312685_SNP [dm3] 3R_26486963_SNP [dm6]	G	A	2.044e^-4	0.915	INTRON plum
2R	16848102	2R_16848102_SNP [dm3] 2R_20960597_SNP [dm6]	A	G	2.055e^-4	0.915	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	4660364	2R_4660364_SNP [dm3] 2R_8772859_SNP [dm6]	G	C	2.058e^-4	0.915	INTERGENIC
2R	10276390	2R_10276390_SNP [dm3] 2R_14388885_SNP [dm6]	C	A	2.064e^-4	0.915	INTERGENIC
X	15429472	X_15429472_INS [dm3] X_15535439_INS [dm6]	A	AATGCGGAAATTTGGCAAAA...	2.074e^-4	0.915	INTRON Ac13E
2R	19634477	2R_19634477_SNP [dm3] 2R_23746954_SNP [dm6]	T	C	2.077e^-4	0.915	UPSTREAM CG13560 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	16491408	2L_16491408_SNP [dm3] 2L_16491408_SNP [dm6]	C	T	2.082e^-4	0.915	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
X	2750275	X_2750275_INS [dm3] X_2856242_INS [dm6]	C	AT	2.086e^-4	0.915	INTRON kirre
3L	3874228	3L_3874228_SNP [dm3] 3L_3874228_SNP [dm6]	G	A	2.090e^-4	0.915	INTERGENIC
3L	5852053	3L_5852053_SNP [dm3] 3L_5858953_SNP [dm6]	C	T	2.092e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17981617	3R_17981617_SNP [dm3] 3R_22155895_SNP [dm6]	G	C	2.093e^-4	0.915	INTRON SKIP	TF binding site mE1_TFBS_HSA
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	2.094e^-4	0.915	INTRON nwk
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	2.098e^-4	0.915	UPSTREAM Cyp316a1 INTERGENIC
2R	15779211	2R_15779211_SNP [dm3] 2R_19891706_SNP [dm6]	G	A	2.105e^-4	0.915	INTERGENIC
3R	5126803	3R_5126803_INS [dm3] 3R_9301081_INS [dm6]	T	TGTAATGTA	2.110e^-4	0.915	INTRON CG8861
2L	5620681	2L_5620681_SNP [dm3] 2L_5620681_SNP [dm6]	A	T	2.112e^-4	0.915	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
3L	12318058	3L_12318058_SNP [dm3] 3L_12324958_SNP [dm6]	G	T	2.116e^-4	0.915	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2832777	2L_2832777_SNP [dm3] 2L_2832777_SNP [dm6]	A	T	2.117e^-4	0.915	INTERGENIC
3L	3983582	3L_3983582_SNP [dm3] 3L_3983582_SNP [dm6]	G	A	2.121e^-4	0.915	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1362833	2L_1362833_SNP [dm3] 2L_1362833_SNP [dm6]	T	C	2.131e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26490268	3R_26490268_DEL [dm3] 3R_30664546_DEL [dm6]	AA	A	2.143e^-4	0.915	UPSTREAM CR45191 INTERGENIC
2R	15291764	2R_15291764_SNP [dm3] 2R_19404259_SNP [dm6]	A	G	2.147e^-4	0.915	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9273030	2R_9273030_SNP [dm3] 2R_13385525_SNP [dm6]	C	A	2.151e^-4	0.915	INTERGENIC
X	4554142	X_4554142_SNP [dm3] X_4660109_SNP [dm6]	G	C	2.154e^-4	0.915	SYNONYMOUS_CODING CG3009	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18737115	2L_18737115_SNP [dm3] 2L_18737115_SNP [dm6]	G	A	2.165e^-4	0.915	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12615971	3R_12615971_SNP [dm3] 3R_16790249_SNP [dm6]	T	G	2.175e^-4	0.915	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12749460	3L_12749460_SNP [dm3] 3L_12756360_SNP [dm6]	G	T	2.176e^-4	0.915	INTRON CG32113
3L	13914390	3L_13914390_SNP [dm3] 3L_13921290_SNP [dm6]	T	C	2.188e^-4	0.915	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19625461	2L_19625461_SNP [dm3] 2L_19625461_SNP [dm6]	T	C	2.191e^-4	0.915	INTRON Lar
2R	11618538	2R_11618538_SNP [dm3] 2R_15731033_SNP [dm6]	A	T	2.191e^-4	0.915	INTRON CG30089	TF binding site mE1_TFBS_HSA
3R	13425255	3R_13425255_SNP [dm3] 3R_17599533_SNP [dm6]	A	T	2.200e^-4	0.915	INTERGENIC
2L	13088260	2L_13088260_SNP [dm3] 2L_13088260_SNP [dm6]	T	A	2.201e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12461604	3L_12461604_SNP [dm3] 3L_12468504_SNP [dm6]	T	C	2.205e^-4	0.915	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6363666	2R_6363666_DEL [dm3] 2R_10476161_DEL [dm6]	AA	A	2.223e^-4	0.915	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13913579	3L_13913579_SNP [dm3] 3L_13920479_SNP [dm6]	T	C	2.231e^-4	0.915	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20038578	X_20038578_SNP [dm3] X_20144545_SNP [dm6]	G	T	2.232e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9541503	3L_9541503_SNP [dm3] 3L_9548403_SNP [dm6]	A	G	2.235e^-4	0.915	INTRON CG42673
3L	13913954	3L_13913954_SNP [dm3] 3L_13920854_SNP [dm6]	G	A	2.235e^-4	0.915	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16230466	3L_16230466_SNP [dm3] 3L_16237366_SNP [dm6]	C	T	2.248e^-4	0.915	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
3R	4687412	3R_4687412_SNP [dm3] 3R_8861690_SNP [dm6]	A	G	2.250e^-4	0.915	UPSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22353524	3R_22353524_SNP [dm3] 3R_26527802_SNP [dm6]	C	A	2.274e^-4	0.915	INTRON plum
X	17125766	X_17125766_SNP [dm3] X_17231733_SNP [dm6]	G	A	2.278e^-4	0.915	UPSTREAM CG10597 INTERGENIC
2L	11595354	2L_11595354_SNP [dm3] 2L_11595354_SNP [dm6]	C	T	2.287e^-4	0.915	INTRON kek2
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	2.291e^-4	0.915	INTRON nwk
3L	11915706	3L_11915706_SNP [dm3] 3L_11922606_SNP [dm6]	T	A	2.293e^-4	0.915	DOWNSTREAM CG5718 & 1 other INTRON CG44837	TF binding site mE1_TFBS_cad
2R	11963972	2R_11963972_INS [dm3] 2R_16076467_INS [dm6]	A	AT	2.299e^-4	0.915	INTERGENIC
2R	6336323	2R_6336323_DEL [dm3] 2R_10448818_DEL [dm6]	TCTAGCAAAAGTAAATTGTA...	C	2.305e^-4	0.915	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	22968322	3L_22968322_SNP [dm3] 3L_22975222_SNP [dm6]	T	A	2.308e^-4	0.915	INTERGENIC
2L	20028401	2L_20028401_DEL [dm3] 2L_20028401_DEL [dm6]	TAATATAT	T	2.325e^-4	0.915	INTRON sNPF	TF binding site mE1_TFBS_cnc
2R	8840116	2R_8840116_SNP [dm3] 2R_12952611_SNP [dm6]	A	G	2.336e^-4	0.915	UPSTREAM CG13321 & 2 others INTERGENIC
X	12850490	X_12850490_SNP [dm3] X_12956457_SNP [dm6]	A	C	2.350e^-4	0.915	INTRON hec
3L	11952827	3L_11952827_SNP [dm3] 3L_11959727_SNP [dm6]	C	A	2.358e^-4	0.915	NON_SYNONYMOUS_CODING prc DOWNSTREAM CG43294
2L	5620644	2L_5620644_SNP [dm3] 2L_5620644_SNP [dm6]	C	T	2.360e^-4	0.915	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	19434909	2L_19434909_SNP [dm3] 2L_19434909_SNP [dm6]	G	T	2.363e^-4	0.915	DOWNSTREAM CG10237 INTRON Rab9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6882235	3R_6882235_SNP [dm3] 3R_11056513_SNP [dm6]	A	G	2.372e^-4	0.915	INTERGENIC
2L	6986454	2L_6986454_SNP [dm3] 2L_6986454_SNP [dm6]	A	C	2.372e^-4	0.915	INTRON uif EXON CR44326
3R	13936811	3R_13936811_SNP [dm3] 3R_18111089_SNP [dm6]	T	C	2.375e^-4	0.915	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19623532	X_19623532_SNP [dm3] X_19729499_SNP [dm6]	G	A	2.395e^-4	0.915	UTR_3_PRIME CG12531
X	15312292	X_15312292_SNP [dm3] X_15418259_SNP [dm6]	A	C	2.399e^-4	0.915	INTRON Cngl
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	2.399e^-4	0.915	INTRON nwk
3R	2850893	3R_2850893_SNP [dm3] 3R_7025171_SNP [dm6]	T	C	2.400e^-4	0.915	INTERGENIC
3L	10000478	3L_10000478_SNP [dm3] 3L_10007378_SNP [dm6]	T	C	2.401e^-4	0.915	INTRON dpr6
3R	17311872	3R_17311872_SNP [dm3] 3R_21486150_SNP [dm6]	A	G	2.403e^-4	0.915	SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_HSA
2R	3688808	2R_3688808_SNP [dm3] 2R_7801303_SNP [dm6]	T	C	2.409e^-4	0.915	UTR_3_PRIME Nop17l DOWNSTREAM mus205
3R	13590955	3R_13590955_SNP [dm3] 3R_17765233_SNP [dm6]	G	A	2.411e^-4	0.915	INTERGENIC
2L	17937588	2L_17937588_SNP [dm3] 2L_17937588_SNP [dm6]	C	T	2.414e^-4	0.915	INTERGENIC
3L	15905729	3L_15905729_SNP [dm3] 3L_15912629_SNP [dm6]	A	C	2.418e^-4	0.915	INTRON sff
3L	10770819	3L_10770819_SNP [dm3] 3L_10777719_SNP [dm6]	T	A	2.421e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	13913947	3L_13913947_SNP [dm3] 3L_13920847_SNP [dm6]	T	A	2.439e^-4	0.915	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4768980	2R_4768980_SNP [dm3] 2R_8881475_SNP [dm6]	T	C	2.439e^-4	0.915	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11973977	2R_11973977_SNP [dm3] 2R_16086472_SNP [dm6]	T	A	2.441e^-4	0.915	INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19971261	2L_19971261_SNP [dm3] 2L_19971261_SNP [dm6]	G	A	2.444e^-4	0.915	SYNONYMOUS_CODING CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13914415	3L_13914415_SNP [dm3] 3L_13921315_SNP [dm6]	A	G	2.446e^-4	0.915	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21593558	3R_21593558_SNP [dm3] 3R_25767836_SNP [dm6]	A	T	2.446e^-4	0.915	INTERGENIC
3L	9423023	3L_9423023_SNP [dm3] 3L_9429923_SNP [dm6]	A	C	2.448e^-4	0.915	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8430292	2R_8430292_SNP [dm3] 2R_12542787_SNP [dm6]	G	C	2.452e^-4	0.915	INTRON fra
X	16083139	X_16083139_SNP [dm3] X_16189106_SNP [dm6]	G	C	2.458e^-4	0.915	INTERGENIC
2L	1638821	2L_1638821_SNP [dm3] 2L_1638821_SNP [dm6]	G	T	2.459e^-4	0.915	INTERGENIC
2L	13252523	2L_13252523_SNP [dm3] 2L_13252523_SNP [dm6]	T	C	2.467e^-4	0.915	INTRON CG31728
2L	15488448	2L_15488448_SNP [dm3] 2L_15488448_SNP [dm6]	G	A	2.482e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4221977	2R_4221977_SNP [dm3] 2R_8334472_SNP [dm6]	T	C	2.489e^-4	0.915	INTRON pdm3
3L	1581171	3L_1581171_SNP [dm3] 3L_1581171_SNP [dm6]	C	T	2.500e^-4	0.915	INTRON CG13917
X	12220166	X_12220166_SNP [dm3] X_12326133_SNP [dm6]	T	G	2.502e^-4	0.915	INTRON Ten-a
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	2.504e^-4	0.915	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3R	20014008	3R_20014008_SNP [dm3] 3R_24188286_SNP [dm6]	A	G	2.506e^-4	0.915	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
X	10084888	X_10084888_SNP [dm3] X_10190855_SNP [dm6]	A	G	2.510e^-4	0.915	INTRON CR44894 & 1 other
2L	7273772	2L_7273772_SNP [dm3] 2L_7273772_SNP [dm6]	T	A	2.510e^-4	0.915	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	9618119	3L_9618119_SNP [dm3] 3L_9625019_SNP [dm6]	C	T	2.517e^-4	0.915	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6880717	3R_6880717_SNP [dm3] 3R_11054995_SNP [dm6]	A	G	2.518e^-4	0.915	INTERGENIC
3R	22778983	3R_22778983_SNP [dm3] 3R_26953261_SNP [dm6]	C	G	2.518e^-4	0.915	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11196804	3L_11196804_SNP [dm3] 3L_11203704_SNP [dm6]	A	T	2.522e^-4	0.915	INTRON Plod
3R	1765034	3R_1765034_SNP [dm3] 3R_5939312_SNP [dm6]	A	G	2.524e^-4	0.915	INTRON CG34113
3L	9202244	3L_9202244_SNP [dm3] 3L_9209144_SNP [dm6]	A	G	2.526e^-4	0.915	UPSTREAM Slc45-1 INTERGENIC
3R	6689338	3R_6689338_SNP [dm3] 3R_10863616_SNP [dm6]	T	C	2.528e^-4	0.915	UTR_3_PRIME SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
2L	3374678	2L_3374678_SNP [dm3] 2L_3374678_SNP [dm6]	T	C	2.535e^-4	0.915	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22312347	3R_22312347_SNP [dm3] 3R_26486625_SNP [dm6]	T	C	2.535e^-4	0.915	INTRON plum
2L	20025967	2L_20025967_SNP [dm3] 2L_20025967_SNP [dm6]	T	A	2.545e^-4	0.915	UPSTREAM CG10659 INTERGENIC	transposable element FlyBase
2L	19390248	2L_19390248_SNP [dm3] 2L_19390248_SNP [dm6]	C	G	2.548e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
3L	3485406	3L_3485406_SNP [dm3] 3L_3485406_SNP [dm6]	C	T	2.559e^-4	0.915	UPSTREAM CG43074 & 1 other INTRON CG42324
2R	17098462	2R_17098462_SNP [dm3] 2R_21210957_SNP [dm6]	A	C	2.560e^-4	0.915	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	11618546	2R_11618546_SNP [dm3] 2R_15731041_SNP [dm6]	G	A	2.569e^-4	0.915	INTRON CG30089	TF binding site mE1_TFBS_HSA
2R	9767787	2R_9767787_SNP [dm3] 2R_13880282_SNP [dm6]	A	G	2.574e^-4	0.915	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	14924542	2L_14924542_DEL [dm3] 2L_14924542_DEL [dm6]	TGCCCT	T	2.580e^-4	0.915	UPSTREAM CG3491 INTRON CG42313
3L	14242380	3L_14242380_SNP [dm3] 3L_14249280_SNP [dm6]	C	T	2.586e^-4	0.915	INTERGENIC
2L	11323571	2L_11323571_SNP [dm3] 2L_11323571_SNP [dm6]	A	T	2.600e^-4	0.915	INTERGENIC
3R	20845137	3R_20845137_SNP [dm3] 3R_25019415_SNP [dm6]	C	T	2.600e^-4	0.915	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
2L	8741096	2L_8741096_SNP [dm3] 2L_8741096_SNP [dm6]	A	T	2.610e^-4	0.915	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	16851785	X_16851785_SNP [dm3] X_16957752_SNP [dm6]	T	C	2.613e^-4	0.915	SYNONYMOUS_CODING CG9086	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19769343	3L_19769343_SNP [dm3] 3L_19776243_SNP [dm6]	C	G	2.616e^-4	0.915	INTRON CG42637 & 1 other
3L	19770076	3L_19770076_SNP [dm3] 3L_19776976_SNP [dm6]	G	C	2.616e^-4	0.915	INTRON CG42637 & 1 other
X	5727690	X_5727690_SNP [dm3] X_5833657_SNP [dm6]	T	C	2.623e^-4	0.915	INTRON CG15765
2R	17144365	2R_17144365_SNP [dm3] 2R_21256860_SNP [dm6]	A	G	2.628e^-4	0.915	INTRON Rgk3
3R	26542647	3R_26542647_SNP [dm3] 3R_30716925_SNP [dm6]	A	C	2.629e^-4	0.915	INTERGENIC
2L	13154087	2L_13154087_SNP [dm3] 2L_13154087_SNP [dm6]	A	G	2.639e^-4	0.915	INTERGENIC
2L	19215892	2L_19215892_SNP [dm3] 2L_19215892_SNP [dm6]	A	T	2.643e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22330128	X_22330128_DEL [dm3] X_22928292_DEL [dm6]	GAGTAA	G	2.644e^-4	0.915	INTERGENIC
2L	19903718	2L_19903718_SNP [dm3] 2L_19903718_SNP [dm6]	C	T	2.646e^-4	0.915	INTRON sick
3R	8608584	3R_8608584_SNP [dm3] 3R_12782862_SNP [dm6]	G	A	2.652e^-4	0.915	INTRON beat-Vc
3R	8608586	3R_8608586_SNP [dm3] 3R_12782864_SNP [dm6]	G	A	2.652e^-4	0.915	INTRON beat-Vc
3L	7760088	3L_7760088_SNP [dm3] 3L_7766988_SNP [dm6]	T	C	2.652e^-4	0.915	SYNONYMOUS_CODING Clk DOWNSTREAM CG32371
2L	17500995	2L_17500995_SNP [dm3] 2L_17500995_SNP [dm6]	G	A	2.657e^-4	0.915	UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	18737133	2L_18737133_SNP [dm3] 2L_18737133_SNP [dm6]	G	A	2.658e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9018506	3L_9018506_SNP [dm3] 3L_9025406_SNP [dm6]	G	C	2.664e^-4	0.915	INTERGENIC
2R	14342478	2R_14342478_SNP [dm3] 2R_18454973_SNP [dm6]	A	T	2.666e^-4	0.915	UPSTREAM CG17669 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16438912	3R_16438912_SNP [dm3] 3R_20613190_SNP [dm6]	T	A	2.668e^-4	0.915	DOWNSTREAM bon INTRON CG15923	TF binding site mE1_TFBS_cad
3R	17881278	3R_17881278_SNP [dm3] 3R_22055556_SNP [dm6]	T	G	2.670e^-4	0.915	INTRON how
2L	3261346	2L_3261346_SNP [dm3] 2L_3261346_SNP [dm6]	C	T	2.677e^-4	0.915	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
X	11308760	X_11308760_SNP [dm3] X_11414727_SNP [dm6]	G	A	2.684e^-4	0.915	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da
2L	5620734	2L_5620734_SNP [dm3] 2L_5620734_SNP [dm6]	C	T	2.690e^-4	0.915	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	2850269	2L_2850269_SNP [dm3] 2L_2850269_SNP [dm6]	G	A	2.691e^-4	0.915	SYNONYMOUS_CODING CG3104	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17903456	2L_17903456_SNP [dm3] 2L_17903456_SNP [dm6]	A	T	2.698e^-4	0.915	UPSTREAM CR45332 & 1 other INTERGENIC
3R	22310394	3R_22310394_SNP [dm3] 3R_26484672_SNP [dm6]	G	T	2.705e^-4	0.915	INTRON plum
3R	14327299	3R_14327299_SNP [dm3] 3R_18501577_SNP [dm6]	A	T	2.708e^-4	0.915	INTRON fru	TF binding site BDTNP1_TFBS_da
X	9747027	X_9747027_SNP [dm3] X_9852994_SNP [dm6]	C	A	2.725e^-4	0.915	UTR_3_PRIME CG32698
X	16851590	X_16851590_SNP [dm3] X_16957557_SNP [dm6]	G	C	2.728e^-4	0.915	SYNONYMOUS_CODING CG9086	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19390222	2L_19390222_SNP [dm3] 2L_19390222_SNP [dm6]	C	T	2.734e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
2L	1362807	2L_1362807_SNP [dm3] 2L_1362807_SNP [dm6]	A	G	2.735e^-4	0.915	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
3L	11438944	3L_11438944_SNP [dm3] 3L_11445844_SNP [dm6]	G	A	2.738e^-4	0.915	SYNONYMOUS_CODING CG7557 UPSTREAM CR44549	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14483829	2L_14483829_SNP [dm3] 2L_14483829_SNP [dm6]	T	A	2.745e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	11070984	2L_11070984_SNP [dm3] 2L_11070984_SNP [dm6]	A	T	2.746e^-4	0.915	UPSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14662987	2R_14662987_SNP [dm3] 2R_18775482_SNP [dm6]	G	C	2.769e^-4	0.915	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
3R	21590443	3R_21590443_DEL [dm3] 3R_25764721_DEL [dm6]	TT	C	2.770e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25039385	3R_25039385_SNP [dm3] 3R_29213663_SNP [dm6]	T	C	2.771e^-4	0.915	UPSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13154088	2L_13154088_SNP [dm3] 2L_13154088_SNP [dm6]	A	C	2.775e^-4	0.915	INTERGENIC
2L	11553207	2L_11553207_SNP [dm3] 2L_11553207_SNP [dm6]	G	T	2.777e^-4	0.915	INTERGENIC
3L	7002884	3L_7002884_SNP [dm3] 3L_7009784_SNP [dm6]	T	C	2.785e^-4	0.915	INTRON Mp
X	5605890	X_5605890_SNP [dm3] X_5711857_SNP [dm6]	T	C	2.787e^-4	0.915	INTRON CG33080
2L	10621164	2L_10621164_SNP [dm3] 2L_10621164_SNP [dm6]	A	T	2.790e^-4	0.915	INTRON Trim9
3L	7520527	3L_7520527_SNP [dm3] 3L_7527427_SNP [dm6]	C	T	2.795e^-4	0.915	UTR_3_PRIME ltl
3R	13669647	3R_13669647_SNP [dm3] 3R_17843925_SNP [dm6]	A	T	2.798e^-4	0.915	INTRON tinc
2L	7106606	2L_7106606_SNP [dm3] 2L_7106606_SNP [dm6]	A	T	2.801e^-4	0.915	INTRON Pvf3
2L	14590433	2L_14590433_SNP [dm3] 2L_14590433_SNP [dm6]	A	C	2.804e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14515851	3R_14515851_SNP [dm3] 3R_18690129_SNP [dm6]	C	G	2.805e^-4	0.915	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10771075	3L_10771075_SNP [dm3] 3L_10777975_SNP [dm6]	G	A	2.815e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3R	16226630	3R_16226630_SNP [dm3] 3R_20400908_SNP [dm6]	T	G	2.815e^-4	0.915	UTR_3_PRIME Gfrl INTRON Gfrl
2R	11964043	2R_11964043_SNP [dm3] 2R_16076538_SNP [dm6]	G	T	2.816e^-4	0.915	INTERGENIC
3L	9779589	3L_9779589_SNP [dm3] 3L_9786489_SNP [dm6]	G	A	2.818e^-4	0.915	DOWNSTREAM CG8177 INTERGENIC
3L	14868014	3L_14868014_SNP [dm3] 3L_14874914_SNP [dm6]	C	T	2.824e^-4	0.915	INTRON CG17839
2R	17575287	2R_17575287_SNP [dm3] 2R_21687782_SNP [dm6]	T	A	2.842e^-4	0.915	UPSTREAM Tbp & 1 other DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14283117	3R_14283117_SNP [dm3] 3R_18457395_SNP [dm6]	A	G	2.842e^-4	0.915	INTRON fru
2L	10604342	2L_10604342_SNP [dm3] 2L_10604342_SNP [dm6]	A	T	2.843e^-4	0.915	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19401608	2L_19401608_SNP [dm3] 2L_19401608_SNP [dm6]	G	A	2.843e^-4	0.915	INTRON Pax
X	5605864	X_5605864_SNP [dm3] X_5711831_SNP [dm6]	A	G	2.852e^-4	0.915	INTRON CG33080
3R	15468640	3R_15468640_SNP [dm3] 3R_19642918_SNP [dm6]	A	G	2.856e^-4	0.915	UPSTREAM subdued DOWNSTREAM Vha13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14293351	3L_14293351_SNP [dm3] 3L_14300251_SNP [dm6]	C	A	2.874e^-4	0.915	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7520356	3L_7520356_SNP [dm3] 3L_7527256_SNP [dm6]	A	G	2.875e^-4	0.915	UTR_3_PRIME ltl
3R	20844269	3R_20844269_SNP [dm3] 3R_25018547_SNP [dm6]	T	C	2.876e^-4	0.915	SYNONYMOUS_CODING tnc
3L	6807543	3L_6807543_SNP [dm3] 3L_6814443_SNP [dm6]	C	G	2.883e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	1199449	2L_1199449_SNP [dm3] 2L_1199449_SNP [dm6]	C	T	2.884e^-4	0.915	UTR_5_PRIME CG43348 UPSTREAM CG43349 & 1 other
3L	531165	3L_531165_SNP [dm3] 3L_531165_SNP [dm6]	C	T	2.887e^-4	0.915	INTRON klar
2L	5620487	2L_5620487_SNP [dm3] 2L_5620487_SNP [dm6]	T	A	2.892e^-4	0.915	UPSTREAM CR44796 DOWNSTREAM Cyp6a16 INTERGENIC
X	6455039	X_6455039_SNP [dm3] X_6561006_SNP [dm6]	A	G	2.902e^-4	0.915	SYNONYMOUS_CODING CG34417
2R	8446868	2R_8446868_SNP [dm3] 2R_12559363_SNP [dm6]	T	A	2.905e^-4	0.915	INTRON fra
2R	4531876	2R_4531876_SNP [dm3] 2R_8644371_SNP [dm6]	T	A	2.906e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9905963	2R_9905963_SNP [dm3] 2R_14018458_SNP [dm6]	A	C	2.917e^-4	0.915	INTRON mam
2R	15283505	2R_15283505_SNP [dm3] 2R_19396000_SNP [dm6]	T	C	2.919e^-4	0.915	UPSTREAM SdhA DOWNSTREAM cer INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11964040	2R_11964040_SNP [dm3] 2R_16076535_SNP [dm6]	T	A	2.926e^-4	0.915	INTERGENIC
X	10084867	X_10084867_SNP [dm3] X_10190834_SNP [dm6]	G	A	2.926e^-4	0.915	INTRON CR44894 & 1 other
3L	18076512	3L_18076512_SNP [dm3] 3L_18083412_SNP [dm6]	G	T	2.928e^-4	0.915	INTRON CR43253
2L	17996568	2L_17996568_SNP [dm3] 2L_17996568_SNP [dm6]	C	T	2.932e^-4	0.915	INTERGENIC
3L	10000475	3L_10000475_SNP [dm3] 3L_10007375_SNP [dm6]	A	T	2.933e^-4	0.915	INTRON dpr6
3R	18479276	3R_18479276_SNP [dm3] 3R_22653554_SNP [dm6]	T	C	2.934e^-4	0.915	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2L	20525148	2L_20525148_SNP [dm3] 2L_20525148_SNP [dm6]	C	G	2.937e^-4	0.915	INTERGENIC
2R	19329353	2R_19329353_SNP [dm3] 2R_23441830_SNP [dm6]	T	G	2.941e^-4	0.915	UPSTREAM Or59a INTERGENIC
3R	25224658	3R_25224658_SNP [dm3] 3R_29398936_SNP [dm6]	A	C	2.947e^-4	0.915	INTRON Ptp99A
2L	10415758	2L_10415758_SNP [dm3] 2L_10415758_SNP [dm6]	C	G	2.950e^-4	0.915	SYNONYMOUS_CODING Klp31E
3R	22434615	3R_22434615_SNP [dm3] 3R_26608893_SNP [dm6]	A	T	2.953e^-4	0.915	DOWNSTREAM CR44951 INTERGENIC
2R	12304257	2R_12304257_SNP [dm3] 2R_16416752_SNP [dm6]	G	T	2.966e^-4	0.915	SYNONYMOUS_CODING Menl-2 UTR_3_PRIME Menl-1 INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1142686	2L_1142686_SNP [dm3] 2L_1142686_SNP [dm6]	T	C	2.977e^-4	0.915	UPSTREAM CR45717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	18989376	2R_18989376_SNP [dm3] 2R_23101853_SNP [dm6]	T	C	2.983e^-4	0.915	UPSTREAM CG42703 DOWNSTREAM Gr59c INTERGENIC
3R	22753443	3R_22753443_SNP [dm3] 3R_26927721_SNP [dm6]	C	A	2.988e^-4	0.915	INTRON sda
2L	11252179	2L_11252179_SNP [dm3] 2L_11252179_SNP [dm6]	G	T	2.988e^-4	0.915	INTRON ab	TF binding site BDTNP1_TFBS_twi
2L	20248120	2L_20248120_SNP [dm3] 2L_20248120_SNP [dm6]	C	A	2.991e^-4	0.915	DOWNSTREAM CR40172 EXON CR40341
2L	10415425	2L_10415425_SNP [dm3] 2L_10415425_SNP [dm6]	G	A	2.995e^-4	0.915	INTRON Klp31E
3R	22778897	3R_22778897_SNP [dm3] 3R_26953175_SNP [dm6]	A	C	2.996e^-4	0.915	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4505073	2R_4505073_SNP [dm3] 2R_8617568_SNP [dm6]	A	C	2.997e^-4	0.915	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19651488	3R_19651488_SNP [dm3] 3R_23825766_SNP [dm6]	T	C	3.000e^-4	0.915	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19918276	3R_19918276_SNP [dm3] 3R_24092554_SNP [dm6]	A	C	3.004e^-4	0.915	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
2L	13154131	2L_13154131_SNP [dm3] 2L_13154131_SNP [dm6]	C	A	3.009e^-4	0.915	INTERGENIC
2L	11591681	2L_11591681_SNP [dm3] 2L_11591681_SNP [dm6]	A	C	3.014e^-4	0.915	UPSTREAM Acp33A INTRON kek2
3R	26478907	3R_26478907_SNP [dm3] 3R_30653185_SNP [dm6]	A	G	3.019e^-4	0.915	INTERGENIC
2L	14575701	2L_14575701_SNP [dm3] 2L_14575701_SNP [dm6]	G	C	3.038e^-4	0.915	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18118475	3R_18118475_SNP [dm3] 3R_22292753_SNP [dm6]	C	G	3.052e^-4	0.915	SYNONYMOUS_CODING SKIP UPSTREAM mir-1010
3L	9541409	3L_9541409_SNP [dm3] 3L_9548309_SNP [dm6]	C	T	3.052e^-4	0.915	INTRON CG42673
X	18639242	X_18639242_SNP [dm3] X_18745209_SNP [dm6]	G	C	3.061e^-4	0.915	INTERGENIC
2R	11019261	2R_11019261_SNP [dm3] 2R_15131756_SNP [dm6]	G	T	3.062e^-4	0.915	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14967587	3R_14967587_SNP [dm3] 3R_19141865_SNP [dm6]	G	A	3.064e^-4	0.915	INTRON Ppcs
2L	12038772	2L_12038772_SNP [dm3] 2L_12038772_SNP [dm6]	A	G	3.064e^-4	0.915	UTR_3_PRIME CG6766 UPSTREAM Tom70	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13926799	3R_13926799_SNP [dm3] 3R_18101077_SNP [dm6]	G	C	3.065e^-4	0.915	INTRON sr
3L	7344653	3L_7344653_SNP [dm3] 3L_7351553_SNP [dm6]	A	C	3.072e^-4	0.915	SYNONYMOUS_CODING qm
3L	8800080	3L_8800080_SNP [dm3] 3L_8806980_SNP [dm6]	G	C	3.074e^-4	0.915	SYNONYMOUS_CODING CG13312 UPSTREAM CG32024	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	18569293	3R_18569293_SNP [dm3] 3R_22743571_SNP [dm6]	T	G	3.076e^-4	0.915	DOWNSTREAM CG6985 INTRON vret	TF binding site mE1_TFBS_cad
2R	12988448	2R_12988448_SNP [dm3] 2R_17100943_SNP [dm6]	A	G	3.078e^-4	0.915	INTRON CG30456
3L	12379619	3L_12379619_SNP [dm3] 3L_12386519_SNP [dm6]	G	A	3.083e^-4	0.915	INTRON Ncc69	TF binding site mE1_TFBS_cnc
3R	12617182	3R_12617182_SNP [dm3] 3R_16791460_SNP [dm6]	T	C	3.084e^-4	0.915	INTERGENIC
3R	10269250	3R_10269250_SNP [dm3] 3R_14443528_SNP [dm6]	G	A	3.086e^-4	0.915	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19648342	3R_19648342_SNP [dm3] 3R_23822620_SNP [dm6]	A	G	3.091e^-4	0.915	INTRON CG34355
X	12972237	X_12972237_SNP [dm3] X_13078204_SNP [dm6]	C	T	3.097e^-4	0.915	UTR_3_PRIME rad	TF binding site mE1_TFBS_kn
2R	4221993	2R_4221993_SNP [dm3] 2R_8334488_SNP [dm6]	C	T	3.103e^-4	0.915	INTRON pdm3
X	16083342	X_16083342_SNP [dm3] X_16189309_SNP [dm6]	G	A	3.114e^-4	0.915	INTERGENIC
3R	6675364	3R_6675364_SNP [dm3] 3R_10849642_SNP [dm6]	C	G	3.118e^-4	0.915	UPSTREAM CG42394 DOWNSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	26808878	3R_26808878_SNP [dm3] 3R_30983156_SNP [dm6]	G	T	3.122e^-4	0.915	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4632481	3L_4632481_SNP [dm3] 3L_4632481_SNP [dm6]	C	T	3.136e^-4	0.915	INTRON axo
3R	14822636	3R_14822636_INS [dm3] 3R_18996914_INS [dm6]	T	TT	3.138e^-4	0.915	INTRON gukh	TF binding site mE1_TFBS_cad
3L	7453628	3L_7453628_SNP [dm3] 3L_7460528_SNP [dm6]	C	T	3.148e^-4	0.915	INTERGENIC
3R	6229559	3R_6229559_SNP [dm3] 3R_10403837_SNP [dm6]	C	G	3.149e^-4	0.915	SYNONYMOUS_CODING CG6325 DOWNSTREAM mthl11	TF binding site mE1_TFBS_cad
X	12439720	X_12439720_SNP [dm3] X_12545687_SNP [dm6]	G	A	3.149e^-4	0.915	INTRON CG43921	TF binding site mE1_TFBS_HSA
3R	18400492	3R_18400492_SNP [dm3] 3R_22574770_SNP [dm6]	C	T	3.152e^-4	0.915	SYNONYMOUS_CODING CG33110
2L	17577780	2L_17577780_SNP [dm3] 2L_17577780_SNP [dm6]	C	T	3.153e^-4	0.915	INTERGENIC
2L	16223157	2L_16223157_SNP [dm3] 2L_16223157_SNP [dm6]	C	T	3.154e^-4	0.915	INTERGENIC
2L	14483828	2L_14483828_SNP [dm3] 2L_14483828_SNP [dm6]	A	C	3.157e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	15845773	X_15845773_SNP [dm3] X_15951740_SNP [dm6]	A	G	3.162e^-4	0.915	SYNONYMOUS_CODING mmd	TF binding site BDTNP1_TFBS_dl
3L	19774332	3L_19774332_INS [dm3] 3L_19781232_INS [dm6]	A	AA	3.166e^-4	0.915	INTRON CG42637 & 1 other
2L	19390270	2L_19390270_SNP [dm3] 2L_19390270_SNP [dm6]	A	G	3.171e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
2R	17098451	2R_17098451_SNP [dm3] 2R_21210946_SNP [dm6]	T	A	3.175e^-4	0.915	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	3767631	3R_3767631_SNP [dm3] 3R_7941909_SNP [dm6]	G	T	3.179e^-4	0.915	INTRON dsx
2L	8741565	2L_8741565_SNP [dm3] 2L_8741565_SNP [dm6]	C	T	3.187e^-4	0.915	UPSTREAM raw INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13291803	2R_13291803_SNP [dm3] 2R_17404298_SNP [dm6]	C	T	3.187e^-4	0.915	SYNONYMOUS_CODING Sip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4686170	3R_4686170_SNP [dm3] 3R_8860448_SNP [dm6]	A	G	3.188e^-4	0.915	INTRON pyd
3R	24624122	3R_24624122_SNP [dm3] 3R_28798400_SNP [dm6]	A	C	3.200e^-4	0.915	INTERGENIC
2R	18989356	2R_18989356_SNP [dm3] 2R_23101833_SNP [dm6]	G	A	3.215e^-4	0.915	UPSTREAM CG42703 DOWNSTREAM Gr59c INTERGENIC
2L	10415421	2L_10415421_SNP [dm3] 2L_10415421_SNP [dm6]	G	A	3.216e^-4	0.915	INTRON Klp31E
3L	9423011	3L_9423011_SNP [dm3] 3L_9429911_SNP [dm6]	A	G	3.234e^-4	0.915	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18177692	3R_18177692_SNP [dm3] 3R_22351970_SNP [dm6]	A	G	3.238e^-4	0.915	UPSTREAM rdhB INTRON rdhB
2L	17814310	2L_17814310_SNP [dm3] 2L_17814310_SNP [dm6]	G	C	3.252e^-4	0.915	INTRON CadN2
2R	4509193	2R_4509193_SNP [dm3] 2R_8621688_SNP [dm6]	G	A	3.263e^-4	0.915	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17356326	3R_17356326_SNP [dm3] 3R_21530604_SNP [dm6]	C	T	3.268e^-4	0.915	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16731462	3R_16731462_SNP [dm3] 3R_20905740_SNP [dm6]	C	A	3.268e^-4	0.915	UPSTREAM TotX INTRON CG5621
2L	13154027	2L_13154027_SNP [dm3] 2L_13154027_SNP [dm6]	A	T	3.269e^-4	0.915	INTERGENIC
2R	11019374	2R_11019374_SNP [dm3] 2R_15131869_SNP [dm6]	A	C	3.276e^-4	0.915	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18238837	2L_18238837_SNP [dm3] 2L_18238837_SNP [dm6]	C	T	3.285e^-4	0.915	INTRON CG42750
2R	4148596	2R_4148596_SNP [dm3] 2R_8261091_SNP [dm6]	T	C	3.304e^-4	0.915	NON_SYNONYMOUS_CODING CG2291 DOWNSTREAM CG14759
2R	8839047	2R_8839047_INS [dm3] 2R_12951542_INS [dm6]	A	ATATATGATATTCGA...	3.311e^-4	0.915	INTRON CG44251 & 1 other
3L	2873079	3L_2873079_SNP [dm3] 3L_2873079_SNP [dm6]	G	T	3.311e^-4	0.915	INTRON CG43444
2L	3374474	2L_3374474_SNP [dm3] 2L_3374474_SNP [dm6]	A	G	3.311e^-4	0.915	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19648335	3R_19648335_SNP [dm3] 3R_23822613_SNP [dm6]	G	A	3.316e^-4	0.915	INTRON CG34355
2L	12309694	2L_12309694_SNP [dm3] 2L_12309694_SNP [dm6]	T	G	3.336e^-4	0.915	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11467368	2R_11467368_INS [dm3] 2R_15579863_INS [dm6]	T	TTAAGATG	3.340e^-4	0.915	INTERGENIC
3R	6880925	3R_6880925_SNP [dm3] 3R_11055203_SNP [dm6]	C	T	3.345e^-4	0.915	INTERGENIC
2L	11643229	2L_11643229_SNP [dm3] 2L_11643229_SNP [dm6]	G	A	3.347e^-4	0.915	INTERGENIC
2L	9047333	2L_9047333_SNP [dm3] 2L_9047333_SNP [dm6]	G	A	3.348e^-4	0.915	INTERGENIC
X	8426829	X_8426829_SNP [dm3] X_8532796_SNP [dm6]	A	C	3.352e^-4	0.915	INTRON Nrg
3L	478096	3L_478096_SNP [dm3] 3L_478096_SNP [dm6]	G	A	3.366e^-4	0.915	INTRON klar
2L	12631496	2L_12631496_SNP [dm3] 2L_12631496_SNP [dm6]	A	T	3.367e^-4	0.915	INTRON Ref2
X	18996936	X_18996936_SNP [dm3] X_19102903_SNP [dm6]	C	G	3.367e^-4	0.915	INTERGENIC
3L	20917492	3L_20917492_SNP [dm3] 3L_20924392_SNP [dm6]	C	A	3.377e^-4	0.915	INTERGENIC
2R	15251405	2R_15251405_SNP [dm3] 2R_19363900_SNP [dm6]	A	T	3.378e^-4	0.915	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2L	19647562	2L_19647562_SNP [dm3] 2L_19647562_SNP [dm6]	T	C	3.383e^-4	0.915	INTRON Lar
3L	8052183	3L_8052183_SNP [dm3] 3L_8059083_SNP [dm6]	T	C	3.385e^-4	0.915	UPSTREAM bip1 INTERGENIC
3R	8154053	3R_8154053_SNP [dm3] 3R_12328331_SNP [dm6]	C	T	3.393e^-4	0.915	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3R	22310488	3R_22310488_SNP [dm3] 3R_26484766_SNP [dm6]	A	T	3.405e^-4	0.915	INTRON plum
3L	8146739	3L_8146739_DEL [dm3] 3L_8153639_DEL [dm6]	GTG	G	3.406e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5661869	3R_5661869_SNP [dm3] 3R_9836147_SNP [dm6]	A	G	3.406e^-4	0.915	INTRON Teh1
3R	7635139	3R_7635139_SNP [dm3] 3R_11809417_SNP [dm6]	T	A	3.409e^-4	0.915	INTRON ClC-a	TF binding site mE1_TFBS_cad
3R	19088192	3R_19088192_SNP [dm3] 3R_23262470_SNP [dm6]	C	T	3.409e^-4	0.915	UTR_3_PRIME orb
3L	13714037	3L_13714037_SNP [dm3] 3L_13720937_SNP [dm6]	G	C	3.410e^-4	0.915	INTRON bru-3
2R	20436868	2R_20436868_SNP [dm3] 2R_24549345_SNP [dm6]	A	G	3.417e^-4	0.915	INTRON CG4622 & 1 other
2R	12320138	2R_12320138_SNP [dm3] 2R_16432633_SNP [dm6]	G	A	3.418e^-4	0.915	SYNONYMOUS_CODING CG4398 DOWNSTREAM Sema-2b
3R	4118919	3R_4118919_SNP [dm3] 3R_8293197_SNP [dm6]	C	G	3.425e^-4	0.915	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24896291	3R_24896291_SNP [dm3] 3R_29070569_SNP [dm6]	T	C	3.429e^-4	0.915	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	19941440	2L_19941440_SNP [dm3] 2L_19941440_SNP [dm6]	C	T	3.431e^-4	0.915	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	17444625	2L_17444625_SNP [dm3] 2L_17444625_SNP [dm6]	G	T	3.432e^-4	0.915	INTRON dl
X	7733472	X_7733472_SNP [dm3] X_7839439_SNP [dm6]	A	T	3.432e^-4	0.915	INTRON CG1402
3R	22433495	3R_22433495_SNP [dm3] 3R_26607773_SNP [dm6]	A	G	3.438e^-4	0.915	EXON CR44951
2R	12400398	2R_12400398_SNP [dm3] 2R_16512893_SNP [dm6]	T	G	3.442e^-4	0.915	INTRON Sema-2a
3R	817727	3R_817727_SNP [dm3] 3R_4992005_SNP [dm6]	T	G	3.446e^-4	0.915	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12616946	3R_12616946_SNP [dm3] 3R_16791224_SNP [dm6]	G	A	3.446e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12236818	2L_12236818_DEL [dm3] 2L_12236818_DEL [dm6]	CCAGC	C	3.456e^-4	0.915	INTRON aret	TF binding site mE1_TFBS_inv
X	12158909	X_12158909_SNP [dm3] X_12264876_SNP [dm6]	C	G	3.457e^-4	0.915	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3729381	X_3729381_SNP [dm3] X_3835348_SNP [dm6]	T	C	3.460e^-4	0.915	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19704091	3R_19704091_SNP [dm3] 3R_23878369_SNP [dm6]	G	A	3.472e^-4	0.915	INTRON Pli
2R	8909552	2R_8909552_SNP [dm3] 2R_13022047_SNP [dm6]	G	A	3.476e^-4	0.915	INTERGENIC
2R	8724619	2R_8724619_SNP [dm3] 2R_12837114_SNP [dm6]	A	C	3.480e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24900244	3R_24900244_SNP [dm3] 3R_29074522_SNP [dm6]	T	C	3.483e^-4	0.915	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1638819	2L_1638819_SNP [dm3] 2L_1638819_SNP [dm6]	T	A	3.485e^-4	0.915	INTERGENIC
X	4825018	X_4825018_SNP [dm3] X_4930985_SNP [dm6]	C	A	3.485e^-4	0.915	UTR_5_PRIME CG44774 UPSTREAM CG44774 INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9947228	X_9947228_SNP [dm3] X_10053195_SNP [dm6]	G	A	3.486e^-4	0.915	UPSTREAM Yp2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	10827891	3L_10827891_SNP [dm3] 3L_10834791_SNP [dm6]	G	A	3.487e^-4	0.915	INTERGENIC
2R	7032754	2R_7032754_SNP [dm3] 2R_11145249_SNP [dm6]	G	C	3.489e^-4	0.915	INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26179678	3R_26179678_SNP [dm3] 3R_30353956_SNP [dm6]	C	T	3.491e^-4	0.915	INTRON hdc
2L	13150387	2L_13150387_SNP [dm3] 2L_13150387_SNP [dm6]	G	T	3.494e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8905042	2R_8905042_SNP [dm3] 2R_13017537_SNP [dm6]	T	G	3.503e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4559742	X_4559742_SNP [dm3] X_4665709_SNP [dm6]	C	T	3.505e^-4	0.915	INTRON CG3009
2R	19649886	2R_19649886_SNP [dm3] 2R_23762363_SNP [dm6]	C	T	3.505e^-4	0.915	INTRON CG9850
3L	20870207	3L_20870207_SNP [dm3] 3L_20877107_SNP [dm6]	C	T	3.519e^-4	0.915	INTRON CG32432
3L	9579325	3L_9579325_SNP [dm3] 3L_9586225_SNP [dm6]	T	A	3.526e^-4	0.915	INTRON CG42673
2L	18223193	2L_18223193_SNP [dm3] 2L_18223193_SNP [dm6]	C	G	3.542e^-4	0.915	INTRON CG42750
X	16989921	X_16989921_INS [dm3] X_17095888_INS [dm6]	T	TAATTCACGTT...	3.542e^-4	0.915	INTRON CG4991 & 1 other
2L	14065449	2L_14065449_SNP [dm3] 2L_14065449_SNP [dm6]	A	C	3.542e^-4	0.915	INTRON nAChRalpha5
3R	24258630	3R_24258630_SNP [dm3] 3R_28432908_SNP [dm6]	A	C	3.546e^-4	0.915	INTRON beat-VI
3L	7760175	3L_7760175_SNP [dm3] 3L_7767075_SNP [dm6]	G	T	3.547e^-4	0.915	NON_SYNONYMOUS_CODING Clk UTR_5_PRIME Clk DOWNSTREAM CG32371
2R	17575243	2R_17575243_SNP [dm3] 2R_21687738_SNP [dm6]	T	A	3.550e^-4	0.915	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10004531	3L_10004531_SNP [dm3] 3L_10011431_SNP [dm6]	G	C	3.561e^-4	0.915	INTRON dpr6
2L	8876722	2L_8876722_INS [dm3] 2L_8876722_INS [dm6]	C	CT	3.570e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	17903450	2L_17903450_SNP [dm3] 2L_17903450_SNP [dm6]	C	G	3.584e^-4	0.915	UPSTREAM CR45332 & 1 other INTERGENIC
X	5367673	X_5367673_DEL [dm3] X_5473640_DEL [dm6]	AGTACAAATCTAAAGTGCCT...	A	3.585e^-4	0.915	INTRON SPR
2L	3495916	2L_3495916_DEL [dm3] 2L_3495916_DEL [dm6]	AAATGAATTGCTGGACTGT...	A	3.589e^-4	0.915	INTRON tim
3R	17311884	3R_17311884_SNP [dm3] 3R_21486162_SNP [dm6]	G	A	3.599e^-4	0.915	SYNONYMOUS_CODING CG7922
3L	23147351	3L_23147351_SNP [dm3] 3L_23154251_SNP [dm6]	A	G	3.605e^-4	0.915	INTERGENIC	transposable element FlyBase
2L	7088807	2L_7088807_SNP [dm3] 2L_7088807_SNP [dm6]	G	T	3.605e^-4	0.915	INTERGENIC
3R	25227049	3R_25227049_SNP [dm3] 3R_29401327_SNP [dm6]	G	T	3.606e^-4	0.915	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3R	19464513	3R_19464513_SNP [dm3] 3R_23638791_SNP [dm6]	A	G	3.606e^-4	0.915	INTRON CG31145
2R	6336318	2R_6336318_SNP [dm3] 2R_10448813_SNP [dm6]	T	A	3.617e^-4	0.915	DOWNSTREAM Cyp49a1 INTRON Galphao
3R	23729648	3R_23729648_SNP [dm3] 3R_27903926_SNP [dm6]	G	A	3.625e^-4	0.915	INTRON CG34353
3R	3043869	3R_3043869_SNP [dm3] 3R_7218147_SNP [dm6]	C	A	3.627e^-4	0.915	NON_SYNONYMOUS_CODING CG14605 UTR_3_PRIME CG14605
3L	1569963	3L_1569963_SNP [dm3] 3L_1569963_SNP [dm6]	T	G	3.632e^-4	0.915	INTRON CG12004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	10891276	2L_10891276_SNP [dm3] 2L_10891276_SNP [dm6]	G	A	3.649e^-4	0.915	INTERGENIC
2L	11735310	2L_11735310_SNP [dm3] 2L_11735310_SNP [dm6]	T	C	3.649e^-4	0.915	INTERGENIC
3R	5126736	3R_5126736_SNP [dm3] 3R_9301014_SNP [dm6]	T	G	3.651e^-4	0.915	INTRON CG8861
2R	15282577	2R_15282577_SNP [dm3] 2R_19395072_SNP [dm6]	G	A	3.655e^-4	0.915	INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16083331	X_16083331_SNP [dm3] X_16189298_SNP [dm6]	A	T	3.657e^-4	0.915	INTERGENIC
2L	11327051	2L_11327051_SNP [dm3] 2L_11327051_SNP [dm6]	G	A	3.669e^-4	0.915	INTERGENIC
2R	10276383	2R_10276383_SNP [dm3] 2R_14388878_SNP [dm6]	C	A	3.670e^-4	0.915	INTERGENIC
3L	531080	3L_531080_SNP [dm3] 3L_531080_SNP [dm6]	A	G	3.673e^-4	0.915	INTRON klar
2L	21878413	2L_21878413_SNP [dm3] 2L_21878413_SNP [dm6]	G	T	3.674e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	26542615	3R_26542615_DEL [dm3] 3R_30716893_DEL [dm6]	AT	A	3.678e^-4	0.915	INTERGENIC
3R	5196301	3R_5196301_SNP [dm3] 3R_9370579_SNP [dm6]	T	C	3.689e^-4	0.915	INTRON FER
3L	10112759	3L_10112759_INS [dm3] 3L_10119659_INS [dm6]	A	AC	3.693e^-4	0.915	INTRON dpr6
2L	3856510	2L_3856510_SNP [dm3] 2L_3856510_SNP [dm6]	C	T	3.697e^-4	0.915	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	20818928	3R_20818928_SNP [dm3] 3R_24993206_SNP [dm6]	A	G	3.698e^-4	0.915	INTRON tnc
2R	1401880	2R_1401880_SNP [dm3] 2R_5514375_SNP [dm6]	G	A	3.699e^-4	0.915	INTRON CG30438	transposable element FlyBase
3L	9619431	3L_9619431_SNP [dm3] 3L_9626331_SNP [dm6]	T	C	3.705e^-4	0.915	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3464800	2L_3464800_SNP [dm3] 2L_3464800_SNP [dm6]	A	G	3.706e^-4	0.915	SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2379073	3L_2379073_SNP [dm3] 3L_2379073_SNP [dm6]	T	C	3.716e^-4	0.915	UTR_5_PRIME CG45186 INTRON CG45186
2L	3174371	2L_3174371_SNP [dm3] 2L_3174371_SNP [dm6]	T	C	3.723e^-4	0.915	SYNONYMOUS_CODING CG15404 UPSTREAM CG31698 DOWNSTREAM CG34393	TF binding site mE1_TFBS_inv
3L	19421337	3L_19421337_SNP [dm3] 3L_19428237_SNP [dm6]	A	G	3.738e^-4	0.915	INTERGENIC
3L	7112063	3L_7112063_SNP [dm3] 3L_7118963_SNP [dm6]	C	T	3.743e^-4	0.915	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	3.767e^-4	0.915	DOWNSTREAM Mks1 INTERGENIC
X	8901827	X_8901827_SNP [dm3] X_9007794_SNP [dm6]	A	T	3.774e^-4	0.915	INTRON rdgA & 1 other
3R	22310523	3R_22310523_SNP [dm3] 3R_26484801_SNP [dm6]	T	A	3.783e^-4	0.915	INTRON plum
2R	15291776	2R_15291776_SNP [dm3] 2R_19404271_SNP [dm6]	T	G	3.788e^-4	0.915	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4832505	X_4832505_SNP [dm3] X_4938472_SNP [dm6]	A	G	3.789e^-4	0.915	UPSTREAM CG44774 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1739031	3R_1739031_SNP [dm3] 3R_5913309_SNP [dm6]	G	A	3.791e^-4	0.915	INTRON CG34113
2L	11246626	2L_11246626_SNP [dm3] 2L_11246626_SNP [dm6]	G	T	3.804e^-4	0.915	INTRON ab	TF binding site mE1_TFBS_chinmo
2L	19390216	2L_19390216_SNP [dm3] 2L_19390216_SNP [dm6]	A	G	3.810e^-4	0.915	UPSTREAM CG17549 DOWNSTREAM CG17544 INTERGENIC
3L	2562673	3L_2562673_SNP [dm3] 3L_2562673_SNP [dm6]	T	A	3.814e^-4	0.915	SYNONYMOUS_CODING msn INTRON msn
3R	14283044	3R_14283044_SNP [dm3] 3R_18457322_SNP [dm6]	G	A	3.820e^-4	0.915	INTRON fru
2R	7442255	2R_7442255_SNP [dm3] 2R_11554750_SNP [dm6]	G	A	3.827e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	5333207	3L_5333207_SNP [dm3] 3L_5340107_SNP [dm6]	A	G	3.829e^-4	0.915	INTERGENIC
3R	4517932	3R_4517932_SNP [dm3] 3R_8692210_SNP [dm6]	C	T	3.831e^-4	0.915	NON_SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	19627537	X_19627537_SNP [dm3] X_19733504_SNP [dm6]	T	C	3.836e^-4	0.915	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2091956	3L_2091956_SNP [dm3] 3L_2091956_SNP [dm6]	A	G	3.845e^-4	0.915	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10827893	3L_10827893_SNP [dm3] 3L_10834793_SNP [dm6]	A	T	3.851e^-4	0.915	INTERGENIC
2L	11966881	2L_11966881_SNP [dm3] 2L_11966881_SNP [dm6]	G	A	3.852e^-4	0.915	INTRON CR43314
3L	10827887	3L_10827887_SNP [dm3] 3L_10834787_SNP [dm6]	T	A	3.864e^-4	0.915	INTERGENIC
X	1617925	X_1617925_SNP [dm3] X_1723892_SNP [dm6]	T	G	3.870e^-4	0.915	INTERGENIC
3R	8608473	3R_8608473_DEL [dm3] 3R_12782751_DEL [dm6]	TTAAA	T	3.874e^-4	0.915	INTRON beat-Vc
3L	18200436	3L_18200436_SNP [dm3] 3L_18207336_SNP [dm6]	C	A	3.878e^-4	0.915	INTERGENIC
3L	9132999	3L_9132999_SNP [dm3] 3L_9139899_SNP [dm6]	T	A	3.895e^-4	0.915	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad
2R	10433970	2R_10433970_SNP [dm3] 2R_14546465_SNP [dm6]	A	C	3.901e^-4	0.915	UPSTREAM CG30076 INTRON ttv
3R	8522728	3R_8522728_SNP [dm3] 3R_12697006_SNP [dm6]	G	T	3.905e^-4	0.915	UTR_3_PRIME NijC UPSTREAM Past1 INTRON NijC
3R	5984982	3R_5984982_SNP [dm3] 3R_10159260_SNP [dm6]	T	A	3.907e^-4	0.915	NON_SYNONYMOUS_CODING CG6254 DOWNSTREAM Invadolysin
3R	18025383	3R_18025383_SNP [dm3] 3R_22199661_SNP [dm6]	G	A	3.908e^-4	0.915	INTRON SKIP & 1 other
2L	14483919	2L_14483919_SNP [dm3] 2L_14483919_SNP [dm6]	T	A	3.908e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	3.919e^-4	0.915	UPSTREAM CG5810 INTRON SNF4Agamma
3R	20845280	3R_20845280_SNP [dm3] 3R_25019558_SNP [dm6]	T	G	3.925e^-4	0.915	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
3R	25299660	3R_25299660_SNP [dm3] 3R_29473938_SNP [dm6]	T	G	3.934e^-4	0.915	INTRON Ptp99A
3R	13912853	3R_13912853_SNP [dm3] 3R_18087131_SNP [dm6]	T	C	3.936e^-4	0.915	INTERGENIC
2R	17945407	2R_17945407_SNP [dm3] 2R_22057902_SNP [dm6]	G	T	3.941e^-4	0.915	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
X	8259939	X_8259939_INS [dm3] X_8365906_INS [dm6]	A	AA	3.952e^-4	0.915	INTRON nAChRalpha3
2L	17577683	2L_17577683_SNP [dm3] 2L_17577683_SNP [dm6]	A	G	3.955e^-4	0.915	INTERGENIC
3L	3983458	3L_3983458_SNP [dm3] 3L_3983458_SNP [dm6]	T	C	3.955e^-4	0.915	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13501729	2L_13501729_SNP [dm3] 2L_13501729_SNP [dm6]	C	T	3.958e^-4	0.915	UTR_3_PRIME B4 DOWNSTREAM B4
3R	11967545	3R_11967545_SNP [dm3] 3R_16141823_SNP [dm6]	C	A	3.962e^-4	0.915	SYNONYMOUS_CODING Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9619908	3L_9619908_SNP [dm3] 3L_9626808_SNP [dm6]	C	T	3.963e^-4	0.915	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
2L	5620649	2L_5620649_SNP [dm3] 2L_5620649_SNP [dm6]	A	G	3.976e^-4	0.915	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	14545844	2L_14545844_SNP [dm3] 2L_14545844_SNP [dm6]	A	T	3.981e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3983565	3L_3983565_SNP [dm3] 3L_3983565_SNP [dm6]	G	C	3.983e^-4	0.915	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20037122	3L_20037122_SNP [dm3] 3L_20044022_SNP [dm6]	C	T	4.007e^-4	0.915	INTERGENIC
2R	14056514	2R_14056514_SNP [dm3] 2R_18169009_SNP [dm6]	A	T	4.007e^-4	0.915	UTR_3_PRIME Dgp-1 DOWNSTREAM CG42518 & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15789212	2R_15789212_SNP [dm3] 2R_19901707_SNP [dm6]	C	T	4.012e^-4	0.915	INTERGENIC
X	2681033	X_2681033_SNP [dm3] X_2787000_SNP [dm6]	A	G	4.017e^-4	0.915	INTRON kirre & 1 other
2R	6201012	2R_6201012_SNP [dm3] 2R_10313507_SNP [dm6]	C	T	4.021e^-4	0.915	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8505464	2R_8505464_SNP [dm3] 2R_12617959_SNP [dm6]	A	T	4.022e^-4	0.915	INTRON Galphaq & 1 other
3R	19648284	3R_19648284_SNP [dm3] 3R_23822562_SNP [dm6]	G	T	4.023e^-4	0.915	INTRON CG34355
X	3444103	X_3444103_SNP [dm3] X_3550070_SNP [dm6]	A	T	4.023e^-4	0.915	INTRON CG32791
2R	17152423	2R_17152423_SNP [dm3] 2R_21264918_SNP [dm6]	T	C	4.027e^-4	0.915	UTR_3_PRIME CG30391 INTRON Rgk3
3L	4435112	3L_4435112_SNP [dm3] 3L_4435112_SNP [dm6]	T	C	4.039e^-4	0.915	INTRON nAChRbeta1	TF binding site mE1_TFBS_cad
3L	16895620	3L_16895620_SNP [dm3] 3L_16902520_SNP [dm6]	C	G	4.042e^-4	0.915	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12587494	2L_12587494_SNP [dm3] 2L_12587494_SNP [dm6]	C	G	4.050e^-4	0.915	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10115713	2L_10115713_DEL [dm3] 2L_10115713_DEL [dm6]	TACAT	T	4.062e^-4	0.915	INTRON CG44153 & 1 other
3L	6280616	3L_6280616_SNP [dm3] 3L_6287516_SNP [dm6]	T	C	4.065e^-4	0.915	INTERGENIC
2R	8182421	2R_8182421_SNP [dm3] 2R_12294916_SNP [dm6]	G	T	4.068e^-4	0.915	INTRON CG42700	TF binding site mE1_TFBS_chinmo
2L	12089620	2L_12089620_SNP [dm3] 2L_12089620_SNP [dm6]	G	A	4.069e^-4	0.915	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9423124	3L_9423124_SNP [dm3] 3L_9430024_SNP [dm6]	G	A	4.074e^-4	0.915	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19622970	3R_19622970_SNP [dm3] 3R_23797248_SNP [dm6]	G	A	4.075e^-4	0.915	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
3R	5028804	3R_5028804_SNP [dm3] 3R_9203082_SNP [dm6]	T	C	4.075e^-4	0.915	INTRON pum
2R	19614706	2R_19614706_SNP [dm3] 2R_23727183_SNP [dm6]	G	T	4.078e^-4	0.915	INTRON Sesn
3R	25302672	3R_25302672_SNP [dm3] 3R_29476950_SNP [dm6]	G	A	4.079e^-4	0.915	INTRON Ptp99A
3R	22438271	3R_22438271_SNP [dm3] 3R_26612549_SNP [dm6]	G	A	4.083e^-4	0.915	INTERGENIC
3R	3369323	3R_3369323_SNP [dm3] 3R_7543601_SNP [dm6]	G	A	4.087e^-4	0.915	INTRON alpha-Est2
2R	9840050	2R_9840050_SNP [dm3] 2R_13952545_SNP [dm6]	A	G	4.106e^-4	0.915	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
2L	14348247	2L_14348247_SNP [dm3] 2L_14348247_SNP [dm6]	C	G	4.106e^-4	0.915	UPSTREAM CR44850 DOWNSTREAM l_2_34Fc INTRON mTTF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
X	20754199	X_20754199_SNP [dm3] X_20883172_SNP [dm6]	G	A	4.108e^-4	0.915	UPSTREAM I-3 INTRON shakB
X	6455264	X_6455264_SNP [dm3] X_6561231_SNP [dm6]	A	T	4.112e^-4	0.915	SYNONYMOUS_CODING CG34417
3R	1739096	3R_1739096_SNP [dm3] 3R_5913374_SNP [dm6]	C	T	4.113e^-4	0.915	INTRON CG34113
3L	3558298	3L_3558298_SNP [dm3] 3L_3558298_SNP [dm6]	G	C	4.116e^-4	0.915	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2918054	X_2918054_SNP [dm3] X_3024021_SNP [dm6]	C	T	4.116e^-4	0.915	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	4.117e^-4	0.915	INTRON nwk
2L	5968558	2L_5968558_SNP [dm3] 2L_5968558_SNP [dm6]	G	A	4.122e^-4	0.915	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1384764	2L_1384764_SNP [dm3] 2L_1384764_SNP [dm6]	A	G	4.132e^-4	0.915	INTRON lea
3R	26542625	3R_26542625_INS [dm3] 3R_30716903_INS [dm6]	A	AGGCTA	4.132e^-4	0.915	INTERGENIC
X	17680526	X_17680526_SNP [dm3] X_17786493_SNP [dm6]	T	A	4.135e^-4	0.915	INTERGENIC
3R	6016298	3R_6016298_SNP [dm3] 3R_10190576_SNP [dm6]	C	G	4.140e^-4	0.915	UPSTREAM CG12814 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13065542	3L_13065542_SNP [dm3] 3L_13072442_SNP [dm6]	C	A	4.159e^-4	0.915	INTERGENIC
3R	810835	3R_810835_SNP [dm3] 3R_4985113_SNP [dm6]	G	A	4.163e^-4	0.915	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16490362	2L_16490362_SNP [dm3] 2L_16490362_SNP [dm6]	C	A	4.163e^-4	0.915	DOWNSTREAM CG4580 INTRON CR44994
2R	6202293	2R_6202293_SNP [dm3] 2R_10314788_SNP [dm6]	C	T	4.176e^-4	0.915	INTRON Ndg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	14099886	X_14099886_SNP [dm3] X_14205853_SNP [dm6]	C	A	4.180e^-4	0.915	UTR_3_PRIME l_1_G0469 DOWNSTREAM l_1_G0469 INTRON l_1_G0007 & 1 other
2R	14078340	2R_14078340_SNP [dm3] 2R_18190835_SNP [dm6]	A	C	4.194e^-4	0.915	INTRON CG33958
2L	8741098	2L_8741098_SNP [dm3] 2L_8741098_SNP [dm6]	C	A	4.198e^-4	0.915	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	10084865	X_10084865_SNP [dm3] X_10190832_SNP [dm6]	G	A	4.199e^-4	0.915	INTRON CR44894 & 1 other
2R	15133623	2R_15133623_SNP [dm3] 2R_19246118_SNP [dm6]	T	C	4.217e^-4	0.915	INTERGENIC
2L	13153604	2L_13153604_SNP [dm3] 2L_13153604_SNP [dm6]	G	A	4.218e^-4	0.915	INTERGENIC
2R	9744407	2R_9744407_SNP [dm3] 2R_13856902_SNP [dm6]	A	T	4.227e^-4	0.915	SYNONYMOUS_CODING tum	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15488510	2L_15488510_SNP [dm3] 2L_15488510_SNP [dm6]	T	C	4.233e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12236804	2L_12236804_INS [dm3] 2L_12236804_INS [dm6]	T	TAAAAT	4.239e^-4	0.915	INTRON aret	TF binding site mE1_TFBS_inv
2L	18424923	2L_18424923_SNP [dm3] 2L_18424923_SNP [dm6]	G	A	4.243e^-4	0.915	INTERGENIC
2L	15770442	2L_15770442_SNP [dm3] 2L_15770442_SNP [dm6]	C	A	4.243e^-4	0.915	NON_SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826
2L	14359664	2L_14359664_SNP [dm3] 2L_14359664_SNP [dm6]	G	C	4.246e^-4	0.915	SYNONYMOUS_CODING Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	14283109	3R_14283109_SNP [dm3] 3R_18457387_SNP [dm6]	C	A	4.253e^-4	0.915	INTRON fru
3R	3832015	3R_3832015_SNP [dm3] 3R_8006293_SNP [dm6]	G	A	4.253e^-4	0.915	SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
2L	5881865	2L_5881865_SNP [dm3] 2L_5881865_SNP [dm6]	A	G	4.256e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4084128	3L_4084128_SNP [dm3] 3L_4084128_SNP [dm6]	A	G	4.261e^-4	0.915	INTRON Gad1
3L	21273144	3L_21273144_SNP [dm3] 3L_21280044_SNP [dm6]	C	G	4.284e^-4	0.915	UTR_5_PRIME AcCoAS UPSTREAM AcCoAS DOWNSTREAM ppl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19196049	3R_19196049_SNP [dm3] 3R_23370327_SNP [dm6]	A	T	4.288e^-4	0.915	INTERGENIC
3R	12617081	3R_12617081_INS [dm3] 3R_16791359_INS [dm6]	T	TTATTTATATTTATT...	4.289e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11618521	2R_11618521_SNP [dm3] 2R_15731016_SNP [dm6]	A	T	4.289e^-4	0.915	INTRON CG30089	TF binding site mE1_TFBS_HSA
2L	13700790	2L_13700790_SNP [dm3] 2L_13700790_SNP [dm6]	G	C	4.295e^-4	0.915	INTRON CG31814
3R	16196075	3R_16196075_SNP [dm3] 3R_20370353_SNP [dm6]	A	G	4.295e^-4	0.915	INTERGENIC
X	18997788	X_18997788_DEL [dm3] X_19103755_DEL [dm6]	ACAAGGACAA	A	4.298e^-4	0.915	INTERGENIC
3R	21416631	3R_21416631_SNP [dm3] 3R_25590909_SNP [dm6]	C	G	4.311e^-4	0.915	DOWNSTREAM ymp INTRON msi	TF binding site mE1_TFBS_HSA
2R	11156960	2R_11156960_SNP [dm3] 2R_15269455_SNP [dm6]	G	T	4.316e^-4	0.915	INTRON Trpm
X	16083283	X_16083283_SNP [dm3] X_16189250_SNP [dm6]	C	T	4.322e^-4	0.915	INTERGENIC
3L	11146692	3L_11146692_SNP [dm3] 3L_11153592_SNP [dm6]	T	A	4.327e^-4	0.915	INTRON CG32082
2R	9419668	2R_9419668_SNP [dm3] 2R_13532163_SNP [dm6]	T	A	4.329e^-4	0.915	INTRON Vmat
X	16016733	X_16016733_SNP [dm3] X_16122700_SNP [dm6]	G	T	4.330e^-4	0.915	SYNONYMOUS_CODING disco-r	TF binding site mE1_TFBS_chinmo
2R	19408291	2R_19408291_SNP [dm3] 2R_23520768_SNP [dm6]	C	T	4.332e^-4	0.915	NON_SYNONYMOUS_CODING RabX1
3R	25111999	3R_25111999_SNP [dm3] 3R_29286277_SNP [dm6]	T	C	4.333e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2586169	2R_2586169_SNP [dm3] 2R_6698664_SNP [dm6]	C	A	4.334e^-4	0.915	UTR_3_PRIME Rab2	TF binding site mE1_TFBS_cad
2R	5558753	2R_5558753_SNP [dm3] 2R_9671248_SNP [dm6]	T	C	4.345e^-4	0.915	INTRON Mmp2
3R	13908829	3R_13908829_SNP [dm3] 3R_18083107_SNP [dm6]	T	A	4.353e^-4	0.915	DOWNSTREAM CG14317 INTERGENIC
2L	20972118	2L_20972118_SNP [dm3] 2L_20972118_SNP [dm6]	G	A	4.372e^-4	0.915	INTRON CG42238
3L	9330688	3L_9330688_SNP [dm3] 3L_9337588_SNP [dm6]	C	T	4.379e^-4	0.915	SYNONYMOUS_CODING PGRP-LA UTR_3_PRIME PGRP-LA
3L	5848816	3L_5848816_SNP [dm3] 3L_5855716_SNP [dm6]	C	T	4.382e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6922823	2R_6922823_SNP [dm3] 2R_11035318_SNP [dm6]	C	T	4.383e^-4	0.915	INTRON luna
2L	17937039	2L_17937039_SNP [dm3] 2L_17937039_SNP [dm6]	A	T	4.383e^-4	0.915	INTERGENIC
3R	14039224	3R_14039224_SNP [dm3] 3R_18213502_SNP [dm6]	G	A	4.388e^-4	0.915	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9103753	3L_9103753_SNP [dm3] 3L_9110653_SNP [dm6]	C	G	4.397e^-4	0.915	INTRON bol
3R	18025499	3R_18025499_SNP [dm3] 3R_22199777_SNP [dm6]	T	G	4.401e^-4	0.915	INTRON SKIP & 1 other
2L	20962594	2L_20962594_SNP [dm3] 2L_20962594_SNP [dm6]	C	T	4.402e^-4	0.915	INTERGENIC
2R	13692103	2R_13692103_SNP [dm3] 2R_17804598_SNP [dm6]	C	A	4.403e^-4	0.915	INTRON grh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3464695	2L_3464695_SNP [dm3] 2L_3464695_SNP [dm6]	G	A	4.408e^-4	0.915	SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9920279	2R_9920279_SNP [dm3] 2R_14032774_SNP [dm6]	T	C	4.409e^-4	0.915	INTRON mam
3R	19041813	3R_19041813_SNP [dm3] 3R_23216091_SNP [dm6]	C	T	4.412e^-4	0.915	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	14559508	2L_14559508_SNP [dm3] 2L_14559508_SNP [dm6]	G	T	4.424e^-4	0.915	UPSTREAM CR44854 INTERGENIC
3R	15468598	3R_15468598_SNP [dm3] 3R_19642876_SNP [dm6]	A	T	4.431e^-4	0.915	UPSTREAM subdued DOWNSTREAM Vha13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25323368	3R_25323368_SNP [dm3] 3R_29497646_SNP [dm6]	C	T	4.432e^-4	0.915	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24822149	3R_24822149_SNP [dm3] 3R_28996427_SNP [dm6]	A	T	4.433e^-4	0.915	INTRON wat	TF binding site BDTNP1_TFBS_twi
2L	15514863	2L_15514863_SNP [dm3] 2L_15514863_SNP [dm6]	C	T	4.438e^-4	0.915	DOWNSTREAM CR44864 INTERGENIC
3R	18025432	3R_18025432_SNP [dm3] 3R_22199710_SNP [dm6]	T	A	4.438e^-4	0.915	INTRON SKIP & 1 other
3R	17356328	3R_17356328_SNP [dm3] 3R_21530606_SNP [dm6]	T	A	4.439e^-4	0.915	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4728058	2R_4728058_DEL [dm3] 2R_8840553_DEL [dm6]	GG	G	4.443e^-4	0.915	INTRON sns
2L	18021443	2L_18021443_SNP [dm3] 2L_18021443_SNP [dm6]	A	C	4.444e^-4	0.915	INTRON rdo
2L	14046925	2L_14046925_SNP [dm3] 2L_14046925_SNP [dm6]	T	G	4.449e^-4	0.915	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4029962	3L_4029962_SNP [dm3] 3L_4029962_SNP [dm6]	A	T	4.451e^-4	0.915	UPSTREAM Gr64c INTRON Gr64b & 1 other
3R	11360804	3R_11360804_SNP [dm3] 3R_15535082_SNP [dm6]	A	T	4.461e^-4	0.915	INTRON CG18522	TF binding site mE1_TFBS_chinmo
2L	19961567	2L_19961567_SNP [dm3] 2L_19961567_SNP [dm6]	A	G	4.492e^-4	0.915	NON_SYNONYMOUS_CODING CG42866 UPSTREAM CG34051 DOWNSTREAM CG13965
2L	4454083	2L_4454083_SNP [dm3] 2L_4454083_SNP [dm6]	A	G	4.499e^-4	0.915	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19984705	3L_19984705_SNP [dm3] 3L_19991605_SNP [dm6]	C	A	4.517e^-4	0.915	UPSTREAM CG7646 & 2 others DOWNSTREAM CR45161 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h
2L	11387807	2L_11387807_SNP [dm3] 2L_11387807_SNP [dm6]	G	C	4.520e^-4	0.915	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25460640	3R_25460640_SNP [dm3] 3R_29634918_SNP [dm6]	C	T	4.538e^-4	0.915	INTRON Dop1R2
2R	12275240	2R_12275240_SNP [dm3] 2R_16387735_SNP [dm6]	C	A	4.539e^-4	0.915	INTRON Sema-2b
2L	1019201	2L_1019201_SNP [dm3] 2L_1019201_SNP [dm6]	G	A	4.547e^-4	0.915	INTRON IA-2
3R	8626925	3R_8626925_SNP [dm3] 3R_12801203_SNP [dm6]	A	G	4.552e^-4	0.915	INTERGENIC
3L	12260596	3L_12260596_SNP [dm3] 3L_12267496_SNP [dm6]	T	A	4.559e^-4	0.915	UPSTREAM CG32100 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	3463007	2L_3463007_SNP [dm3] 2L_3463007_SNP [dm6]	A	G	4.559e^-4	0.915	UTR_3_PRIME msl-2 DOWNSTREAM mir-4971	transposable element FlyBase
3R	5126844	3R_5126844_SNP [dm3] 3R_9301122_SNP [dm6]	T	C	4.565e^-4	0.915	INTRON CG8861
2L	8741204	2L_8741204_SNP [dm3] 2L_8741204_SNP [dm6]	A	G	4.571e^-4	0.915	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	21119601	2L_21119601_SNP [dm3] 2L_21119601_SNP [dm6]	A	T	4.571e^-4	0.915	INTRON Nhe2
X	5605865	X_5605865_SNP [dm3] X_5711832_SNP [dm6]	C	T	4.591e^-4	0.915	INTRON CG33080
2L	13285990	2L_13285990_SNP [dm3] 2L_13285990_SNP [dm6]	A	G	4.591e^-4	0.915	UPSTREAM Uvrag INTRON Drep-4 EXON CR44083	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9947291	X_9947291_SNP [dm3] X_10053258_SNP [dm6]	C	T	4.600e^-4	0.915	UPSTREAM Yp2 & 1 other DOWNSTREAM CR45601 INTERGENIC	regulatory region REDfly_CRMs
3R	26502180	3R_26502180_DEL [dm3] 3R_30676458_DEL [dm6]	GTCCTG	T	4.603e^-4	0.915	INTERGENIC
2R	4149105	2R_4149105_SNP [dm3] 2R_8261600_SNP [dm6]	G	A	4.607e^-4	0.915	UPSTREAM CG2291 INTERGENIC
2R	9767517	2R_9767517_SNP [dm3] 2R_13880012_SNP [dm6]	A	G	4.627e^-4	0.915	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	8905049	2R_8905049_SNP [dm3] 2R_13017544_SNP [dm6]	A	G	4.628e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16190343	3L_16190343_SNP [dm3] 3L_16197243_SNP [dm6]	T	A	4.630e^-4	0.915	UPSTREAM CG33687 & 1 other INTERGENIC
3R	8608590	3R_8608590_SNP [dm3] 3R_12782868_SNP [dm6]	A	T	4.637e^-4	0.915	INTRON beat-Vc
2L	14811615	2L_14811615_SNP [dm3] 2L_14811615_SNP [dm6]	T	C	4.640e^-4	0.915	NON_SYNONYMOUS_CODING CG33309
3L	13225024	3L_13225024_SNP [dm3] 3L_13231924_SNP [dm6]	T	A	4.655e^-4	0.915	INTRON caps
2R	19670855	2R_19670855_SNP [dm3] 2R_23783332_SNP [dm6]	T	C	4.655e^-4	0.915	INTRON CG9850
3L	8051985	3L_8051985_SNP [dm3] 3L_8058885_SNP [dm6]	A	G	4.656e^-4	0.915	UPSTREAM bip1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	16796215	X_16796215_DEL [dm3] X_16902182_DEL [dm6]	ACAGTTCATAA...	A	4.656e^-4	0.915	EXON CR44754
3R	22310519	3R_22310519_SNP [dm3] 3R_26484797_SNP [dm6]	T	A	4.657e^-4	0.915	INTRON plum
3L	14104859	3L_14104859_SNP [dm3] 3L_14111759_SNP [dm6]	T	A	4.663e^-4	0.915	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1237865	2L_1237865_SNP [dm3] 2L_1237865_SNP [dm6]	A	G	4.669e^-4	0.915	INTERGENIC
2L	17500776	2L_17500776_SNP [dm3] 2L_17500776_SNP [dm6]	G	A	4.670e^-4	0.915	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	4.674e^-4	0.915	INTRON nwk
2L	2243128	2L_2243128_SNP [dm3] 2L_2243128_SNP [dm6]	A	G	4.681e^-4	0.915	INTRON CG4267	TF binding site mE1_TFBS_Trl
3L	5425286	3L_5425286_SNP [dm3] 3L_5432186_SNP [dm6]	A	G	4.682e^-4	0.915	INTRON CG34391	TF binding site mE1_TFBS_inv
3L	11620227	3L_11620227_SNP [dm3] 3L_11627127_SNP [dm6]	A	G	4.684e^-4	0.915	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4454023	2L_4454023_SNP [dm3] 2L_4454023_SNP [dm6]	C	A	4.690e^-4	0.915	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21270259	3R_21270259_DEL [dm3] 3R_25444537_DEL [dm6]	CT	C	4.696e^-4	0.915	INTRON Fur1
3L	3577953	3L_3577953_SNP [dm3] 3L_3577953_SNP [dm6]	G	C	4.699e^-4	0.915	INTRON Eip63E
2R	5300052	2R_5300052_SNP [dm3] 2R_9412547_SNP [dm6]	T	C	4.700e^-4	0.915	INTRON wun	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	8788867	2L_8788867_SNP [dm3] 2L_8788867_SNP [dm6]	G	T	4.704e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16748105	2R_16748105_SNP [dm3] 2R_20860600_SNP [dm6]	A	G	4.709e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3462929	2L_3462929_SNP [dm3] 2L_3462929_SNP [dm6]	A	G	4.713e^-4	0.915	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971	transposable element FlyBase
3R	23871662	3R_23871662_SNP [dm3] 3R_28045940_SNP [dm6]	A	T	4.723e^-4	0.915	INTRON CG34362
3L	18307753	3L_18307753_SNP [dm3] 3L_18314653_SNP [dm6]	G	A	4.730e^-4	0.915	INTERGENIC
2L	3462921	2L_3462921_SNP [dm3] 2L_3462921_SNP [dm6]	A	T	4.730e^-4	0.915	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971	transposable element FlyBase
2L	17941498	2L_17941498_SNP [dm3] 2L_17941498_SNP [dm6]	G	A	4.739e^-4	0.915	INTERGENIC
3L	10113215	3L_10113215_SNP [dm3] 3L_10120115_SNP [dm6]	T	C	4.739e^-4	0.915	INTRON dpr6
3R	16196093	3R_16196093_SNP [dm3] 3R_20370371_SNP [dm6]	G	A	4.743e^-4	0.915	INTERGENIC
2L	19975688	2L_19975688_SNP [dm3] 2L_19975688_SNP [dm6]	C	G	4.743e^-4	0.915	INTRON CG43861
X	3774258	X_3774258_SNP [dm3] X_3880225_SNP [dm6]	C	T	4.747e^-4	0.915	SYNONYMOUS_CODING CG2930 UPSTREAM VhaAC39-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8404271	2R_8404271_SNP [dm3] 2R_12516766_SNP [dm6]	C	T	4.747e^-4	0.915	SYNONYMOUS_CODING CG13151 DOWNSTREAM CG8818	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21863574	X_21863574_SNP [dm3] X_22461738_SNP [dm6]	A	G	4.754e^-4	0.915	INTRON CG14619	TF binding site mE1_TFBS_HSA
3L	7002933	3L_7002933_SNP [dm3] 3L_7009833_SNP [dm6]	T	A	4.755e^-4	0.915	INTRON Mp
3L	15917140	3L_15917140_SNP [dm3] 3L_15924040_SNP [dm6]	C	T	4.759e^-4	0.915	INTRON sff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7919564	3L_7919564_SNP [dm3] 3L_7926464_SNP [dm6]	T	A	4.761e^-4	0.915	UTR_3_PRIME syd DOWNSTREAM syd
3L	4316889	3L_4316889_SNP [dm3] 3L_4316889_SNP [dm6]	C	T	4.763e^-4	0.915	SYNONYMOUS_CODING Claspin
2R	585453	2R_585453_SNP [dm3] 2R_4697948_SNP [dm6]	A	T	4.767e^-4	0.915	INTRON Nipped-B
3L	12374395	3L_12374395_SNP [dm3] 3L_12381295_SNP [dm6]	A	C	4.772e^-4	0.915	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	12614693	3R_12614693_SNP [dm3] 3R_16788971_SNP [dm6]	T	C	4.772e^-4	0.915	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15245856	3R_15245856_SNP [dm3] 3R_19420134_SNP [dm6]	A	C	4.775e^-4	0.915	INTRON CG31221
X	12165439	X_12165439_SNP [dm3] X_12271406_SNP [dm6]	T	A	4.776e^-4	0.915	INTRON Ten-a
2R	19295938	2R_19295938_SNP [dm3] 2R_23408415_SNP [dm6]	T	C	4.787e^-4	0.915	INTERGENIC
3R	14369173	3R_14369173_SNP [dm3] 3R_18543451_SNP [dm6]	A	G	4.791e^-4	0.915	INTRON fru
3R	23539357	3R_23539357_SNP [dm3] 3R_27713635_SNP [dm6]	C	A	4.793e^-4	0.915	INTERGENIC
2L	21852321	2L_21852321_SNP [dm3] 2L_21852321_SNP [dm6]	A	G	4.795e^-4	0.915	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17354138	3R_17354138_SNP [dm3] 3R_21528416_SNP [dm6]	T	A	4.796e^-4	0.915	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	3668807	3L_3668807_SNP [dm3] 3L_3668807_SNP [dm6]	C	T	4.800e^-4	0.915	INTERGENIC
X	4975234	X_4975234_SNP [dm3] X_5081201_SNP [dm6]	G	A	4.804e^-4	0.915	UTR_5_PRIME CG32767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17669942	3R_17669942_SNP [dm3] 3R_21844220_SNP [dm6]	A	G	4.811e^-4	0.915	UPSTREAM Gr93b INTRON Gr93c
X	9988122	X_9988122_DEL [dm3] X_10094089_DEL [dm6]	TT	T	4.811e^-4	0.915	INTRON RhoU
3L	16266717	3L_16266717_SNP [dm3] 3L_16273617_SNP [dm6]	G	C	4.819e^-4	0.915	DOWNSTREAM CG13066 INTERGENIC
3R	19648138	3R_19648138_SNP [dm3] 3R_23822416_SNP [dm6]	A	G	4.822e^-4	0.915	INTRON CG34355
2R	14078302	2R_14078302_SNP [dm3] 2R_18190797_SNP [dm6]	G	A	4.842e^-4	0.915	INTRON CG33958
3L	10315038	3L_10315038_SNP [dm3] 3L_10321938_SNP [dm6]	G	A	4.844e^-4	0.915	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	16083025	X_16083025_SNP [dm3] X_16188992_SNP [dm6]	G	A	4.850e^-4	0.915	INTERGENIC
X	17230667	X_17230667_SNP [dm3] X_17336634_SNP [dm6]	G	A	4.855e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17539036	2L_17539036_SNP [dm3] 2L_17539036_SNP [dm6]	G	A	4.859e^-4	0.915	INTERGENIC
3R	24893367	3R_24893367_SNP [dm3] 3R_29067645_SNP [dm6]	T	C	4.862e^-4	0.915	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14115890	2R_14115890_SNP [dm3] 2R_18228385_SNP [dm6]	G	T	4.864e^-4	0.915	EXON CR45310 & 1 other
2R	12275241	2R_12275241_SNP [dm3] 2R_16387736_SNP [dm6]	A	G	4.866e^-4	0.915	INTRON Sema-2b
3L	9423001	3L_9423001_SNP [dm3] 3L_9429901_SNP [dm6]	A	G	4.871e^-4	0.915	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17526516	2L_17526516_SNP [dm3] 2L_17526516_SNP [dm6]	G	T	4.874e^-4	0.915	SYNONYMOUS_CODING CG15144	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9353680	2R_9353680_SNP [dm3] 2R_13466175_SNP [dm6]	G	A	4.875e^-4	0.915	INTRON arr
2R	10047513	2R_10047513_SNP [dm3] 2R_14160008_SNP [dm6]	A	G	4.882e^-4	0.915	SYNONYMOUS_CODING CG8257 DOWNSTREAM CG13016	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20002227	3R_20002227_SNP [dm3] 3R_24176505_SNP [dm6]	G	A	4.890e^-4	0.915	INTRON CG13606
3L	10216451	3L_10216451_SNP [dm3] 3L_10223351_SNP [dm6]	G	A	4.894e^-4	0.915	UPSTREAM scramb1 INTRON scramb1
3R	18025454	3R_18025454_SNP [dm3] 3R_22199732_SNP [dm6]	G	A	4.897e^-4	0.915	INTRON SKIP & 1 other
3R	19918231	3R_19918231_SNP [dm3] 3R_24092509_SNP [dm6]	A	T	4.897e^-4	0.915	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
2R	7127756	2R_7127756_SNP [dm3] 2R_11240251_SNP [dm6]	T	C	4.900e^-4	0.915	UPSTREAM CG13215 INTERGENIC	TF binding site mE1_TFBS_sens
3L	11864544	3L_11864544_SNP [dm3] 3L_11871444_SNP [dm6]	A	T	4.906e^-4	0.915	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24844793	3R_24844793_INS [dm3] 3R_29019071_INS [dm6]	A	AA	4.913e^-4	0.915	INTRON wat
3L	9423032	3L_9423032_SNP [dm3] 3L_9429932_SNP [dm6]	G	T	4.915e^-4	0.915	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14369158	3R_14369158_INS [dm3] 3R_18543436_INS [dm6]	C	GCAAGG	4.923e^-4	0.915	INTRON fru
2R	5558030	2R_5558030_INS [dm3] 2R_9670525_INS [dm6]	C	CC	4.926e^-4	0.915	INTRON Mmp2
2R	19155548	2R_19155548_SNP [dm3] 2R_23268025_SNP [dm6]	T	G	4.930e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20858744	X_20858744_SNP [dm3] X_20987717_SNP [dm6]	G	C	4.933e^-4	0.915	INTERGENIC
2R	6439918	2R_6439918_SNP [dm3] 2R_10552413_SNP [dm6]	A	C	4.949e^-4	0.915	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	15814202	2R_15814202_SNP [dm3] 2R_19926697_SNP [dm6]	C	T	4.960e^-4	0.915	UPSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13154293	2L_13154293_SNP [dm3] 2L_13154293_SNP [dm6]	G	A	4.970e^-4	0.915	INTERGENIC
3L	7344626	3L_7344626_SNP [dm3] 3L_7351526_SNP [dm6]	C	A	4.970e^-4	0.915	SYNONYMOUS_CODING qm
3L	1581109	3L_1581109_SNP [dm3] 3L_1581109_SNP [dm6]	T	A	4.972e^-4	0.915	INTRON CG13917
2L	14684249	2L_14684249_SNP [dm3] 2L_14684249_SNP [dm6]	T	G	4.983e^-4	0.915	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23437547	3R_23437547_SNP [dm3] 3R_27611825_SNP [dm6]	T	C	4.989e^-4	0.915	INTRON Tusp
2R	2585197	2R_2585197_SNP [dm3] 2R_6697692_SNP [dm6]	C	G	4.989e^-4	0.915	INTRON Rab2
3L	22901665	3L_22901665_SNP [dm3] 3L_22908565_SNP [dm6]	G	A	4.989e^-4	0.915	UPSTREAM CR45661 INTERGENIC	transposable element FlyBase
X	4559736	X_4559736_SNP [dm3] X_4665703_SNP [dm6]	G	T	4.997e^-4	0.915	INTRON CG3009
3L	4316885	3L_4316885_SNP [dm3] 3L_4316885_SNP [dm6]	A	C	5.000e^-4	0.915	NON_SYNONYMOUS_CODING Claspin
X	12849002	X_12849002_SNP [dm3] X_12954969_SNP [dm6]	T	A	5.002e^-4	0.915	INTRON hec
2R	15133611	2R_15133611_SNP [dm3] 2R_19246106_SNP [dm6]	A	T	5.013e^-4	0.915	INTERGENIC
3L	2545888	3L_2545888_SNP [dm3] 3L_2545888_SNP [dm6]	A	G	5.020e^-4	0.915	INTRON Spn
3L	16448551	3L_16448551_SNP [dm3] 3L_16455451_SNP [dm6]	G	T	5.021e^-4	0.915	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19042622	3R_19042622_SNP [dm3] 3R_23216900_SNP [dm6]	T	C	5.023e^-4	0.915	INTRON cnc
X	16852948	X_16852948_SNP [dm3] X_16958915_SNP [dm6]	C	T	5.025e^-4	0.915	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad
2L	6355844	2L_6355844_SNP [dm3] 2L_6355844_SNP [dm6]	G	T	5.026e^-4	0.915	INTRON ppk14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15250162	3L_15250162_SNP [dm3] 3L_15257062_SNP [dm6]	G	T	5.030e^-4	0.915	INTERGENIC
X	16883390	X_16883390_SNP [dm3] X_16989357_SNP [dm6]	T	C	5.031e^-4	0.915	INTRON CG45002
3R	20340004	3R_20340004_SNP [dm3] 3R_24514282_SNP [dm6]	A	G	5.033e^-4	0.915	UPSTREAM CG13617 INTRON nAChRbeta2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	19937044	3L_19937044_SNP [dm3] 3L_19943944_SNP [dm6]	G	A	5.041e^-4	0.915	INTRON Ac76E

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.073e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1616 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	20978157	3R_20978157_SNP [dm3] 3R_25152435_SNP [dm6]	T	G	7.928e^-7	0.925	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3465765	3L_3465765_SNP [dm3] 3L_3465765_SNP [dm6]	G	A	9.861e^-7	0.925	SYNONYMOUS_CODING armi UPSTREAM CycJ	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25533814	3R_25533814_SNP [dm3] 3R_29708092_SNP [dm6]	A	G	3.624e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13670890	3R_13670890_SNP [dm3] 3R_17845168_SNP [dm6]	T	G	4.162e^-6	1	INTRON tinc
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	4.458e^-6	1	INTRON bol
2R	6359640	2R_6359640_SNP [dm3] 2R_10472135_SNP [dm6]	T	C	7.946e^-6	1	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_inv
3R	4687685	3R_4687685_SNP [dm3] 3R_8861963_SNP [dm6]	T	G	8.107e^-6	1	UPSTREAM tRNA:R:85Cb DOWNSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17098462	2R_17098462_SNP [dm3] 2R_21210957_SNP [dm6]	A	C	8.701e^-6	1	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	15071254	3R_15071254_SNP [dm3] 3R_19245532_SNP [dm6]	T	C	8.909e^-6	1	INTRON unc79
3R	4687502	3R_4687502_SNP [dm3] 3R_8861780_SNP [dm6]	A	G	1.057e^-5	1	UPSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12617151	3R_12617151_SNP [dm3] 3R_16791429_SNP [dm6]	T	C	1.066e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	18999422	X_18999422_SNP [dm3] X_19105389_SNP [dm6]	A	G	1.173e^-5	1	INTERGENIC
X	16722372	X_16722372_SNP [dm3] X_16828339_SNP [dm6]	T	C	1.307e^-5	1	UPSTREAM CG13004 INTRON CG13004
2R	17098465	2R_17098465_SNP [dm3] 2R_21210960_SNP [dm6]	C	T	1.444e^-5	1	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	17582187	3L_17582187_SNP [dm3] 3L_17589087_SNP [dm6]	T	A	1.489e^-5	1	INTRON Eip74EF
2R	17098451	2R_17098451_SNP [dm3] 2R_21210946_SNP [dm6]	T	A	1.544e^-5	1	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	9990775	3L_9990775_SNP [dm3] 3L_9997675_SNP [dm6]	A	T	1.593e^-5	1	INTRON dpr6
X	16722353	X_16722353_SNP [dm3] X_16828320_SNP [dm6]	T	A	1.598e^-5	1	UPSTREAM CG13004 INTRON CG13004
3R	23269721	3R_23269721_SNP [dm3] 3R_27443999_SNP [dm6]	A	T	1.645e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5745417	2L_5745417_SNP [dm3] 2L_5745417_SNP [dm6]	C	T	1.651e^-5	1	UPSTREAM CG11029 INTRON CG11030
3R	3835219	3R_3835219_SNP [dm3] 3R_8009497_SNP [dm6]	G	T	1.669e^-5	1	NON_SYNONYMOUS_CODING CG3223 UPSTREAM CG11052	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13958095	3R_13958095_SNP [dm3] 3R_18132373_SNP [dm6]	A	G	1.753e^-5	1	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9994667	3L_9994667_SNP [dm3] 3L_10001567_SNP [dm6]	G	A	1.781e^-5	1	INTRON dpr6
3R	25111999	3R_25111999_SNP [dm3] 3R_29286277_SNP [dm6]	T	C	1.800e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8741185	2L_8741185_DEL [dm3] 2L_8741185_DEL [dm6]	CATTTCA	C	1.805e^-5	1	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	10143780	3L_10143780_SNP [dm3] 3L_10150680_SNP [dm6]	A	G	1.812e^-5	1	DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
X	19351955	X_19351955_SNP [dm3] X_19457922_SNP [dm6]	A	C	1.836e^-5	1	INTRON kek5	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	1.851e^-5	1	INTRON bol
3R	15071168	3R_15071168_SNP [dm3] 3R_19245446_SNP [dm6]	G	A	2.021e^-5	1	INTRON unc79
2L	10964612	2L_10964612_SNP [dm3] 2L_10964612_SNP [dm6]	G	A	2.027e^-5	1	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	13913593	3L_13913593_DEL [dm3] 3L_13920493_DEL [dm6]	ATATAAATAAA...	A	2.049e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26532222	3R_26532222_SNP [dm3] 3R_30706500_SNP [dm6]	T	A	2.093e^-5	1	UPSTREAM CG31010 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	2.251e^-5	1	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	10512188	X_10512188_SNP [dm3] X_10618155_SNP [dm6]	A	G	2.281e^-5	1	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9194231	2L_9194231_SNP [dm3] 2L_9194231_SNP [dm6]	C	G	2.393e^-5	1	INTRON tai	transposable element FlyBase
2R	10264599	2R_10264599_SNP [dm3] 2R_14377094_SNP [dm6]	G	T	2.465e^-5	1	DOWNSTREAM CG30075 INTERGENIC
3R	8151515	3R_8151515_SNP [dm3] 3R_12325793_SNP [dm6]	T	C	2.623e^-5	1	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11617500	2R_11617500_SNP [dm3] 2R_15729995_SNP [dm6]	T	C	2.675e^-5	1	INTRON CG30089
2R	15892112	2R_15892112_SNP [dm3] 2R_20004607_SNP [dm6]	C	T	2.693e^-5	1	NON_SYNONYMOUS_CODING CG16898
2R	15892147	2R_15892147_SNP [dm3] 2R_20004642_SNP [dm6]	C	T	2.693e^-5	1	NON_SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
2R	15892322	2R_15892322_SNP [dm3] 2R_20004817_SNP [dm6]	G	A	2.693e^-5	1	STOP_GAINED CG16898	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13913579	3L_13913579_SNP [dm3] 3L_13920479_SNP [dm6]	T	C	2.698e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	17949115	X_17949115_SNP [dm3] X_18055082_SNP [dm6]	G	T	2.714e^-5	1	INTRON Sh
3R	2531309	3R_2531309_INS [dm3] 3R_6705587_INS [dm6]	T	TCT	2.876e^-5	1	DOWNSTREAM Ccp84Aa INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6599251	3L_6599251_SNP [dm3] 3L_6606151_SNP [dm6]	G	C	2.941e^-5	1	UPSTREAM CG8368 & 1 other INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15063861	2R_15063861_SNP [dm3] 2R_19176356_SNP [dm6]	C	T	2.967e^-5	1	INTRON CG10737
X	17949114	X_17949114_SNP [dm3] X_18055081_SNP [dm6]	G	T	3.011e^-5	1	INTRON Sh
2R	9905963	2R_9905963_SNP [dm3] 2R_14018458_SNP [dm6]	A	C	3.078e^-5	1	INTRON mam
3R	26941878	3R_26941878_SNP [dm3] 3R_31116156_SNP [dm6]	C	G	3.309e^-5	1	INTERGENIC
3R	23269735	3R_23269735_SNP [dm3] 3R_27444013_SNP [dm6]	G	A	3.317e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16722358	X_16722358_SNP [dm3] X_16828325_SNP [dm6]	C	T	3.454e^-5	1	UPSTREAM CG13004 INTRON CG13004
2R	6359100	2R_6359100_SNP [dm3] 2R_10471595_SNP [dm6]	T	C	3.510e^-5	1	INTRON whd	TF binding site mE1_TFBS_inv
3L	9018506	3L_9018506_SNP [dm3] 3L_9025406_SNP [dm6]	G	C	3.528e^-5	1	INTERGENIC
2R	10178211	2R_10178211_SNP [dm3] 2R_14290706_SNP [dm6]	C	T	3.580e^-5	1	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med
3L	23147348	3L_23147348_SNP [dm3] 3L_23154248_SNP [dm6]	A	G	3.615e^-5	1	INTERGENIC	transposable element FlyBase
2R	14595918	2R_14595918_SNP [dm3] 2R_18708413_SNP [dm6]	C	T	3.660e^-5	1	DOWNSTREAM CG15073 INTRON CG15087
3R	19901315	3R_19901315_SNP [dm3] 3R_24075593_SNP [dm6]	G	C	3.672e^-5	1	INTRON 4EHP
X	16849728	X_16849728_SNP [dm3] X_16955695_SNP [dm6]	T	C	3.759e^-5	1	UTR_3_PRIME RhoGAP15B DOWNSTREAM CG9086	TF binding site mE1_TFBS_inv
2R	6201012	2R_6201012_SNP [dm3] 2R_10313507_SNP [dm6]	C	T	3.813e^-5	1	UPSTREAM Ndg INTERGENIC	TF binding site mE1_TFBS_Trl
X	15845773	X_15845773_SNP [dm3] X_15951740_SNP [dm6]	A	G	3.818e^-5	1	SYNONYMOUS_CODING mmd	TF binding site BDTNP1_TFBS_dl
2L	7368608	2L_7368608_SNP [dm3] 2L_7368608_SNP [dm6]	G	A	3.930e^-5	1	INTRON Wnt10
3L	13913954	3L_13913954_SNP [dm3] 3L_13920854_SNP [dm6]	G	A	3.984e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13913947	3L_13913947_SNP [dm3] 3L_13920847_SNP [dm6]	T	A	4.055e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	9540832	3R_9540832_SNP [dm3] 3R_13715110_SNP [dm6]	T	C	4.122e^-5	1	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25532794	3R_25532794_DEL [dm3] 3R_29707072_DEL [dm6]	AC	A	4.287e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13692867	2L_13692867_SNP [dm3] 2L_13692867_SNP [dm6]	C	T	4.306e^-5	1	INTRON CG31814
2R	14596188	2R_14596188_SNP [dm3] 2R_18708683_SNP [dm6]	G	A	4.414e^-5	1	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
3R	12614690	3R_12614690_SNP [dm3] 3R_16788968_SNP [dm6]	T	G	4.503e^-5	1	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13154293	2L_13154293_SNP [dm3] 2L_13154293_SNP [dm6]	G	A	4.503e^-5	1	INTERGENIC
2R	4152500	2R_4152500_SNP [dm3] 2R_8264995_SNP [dm6]	T	C	4.543e^-5	1	UPSTREAM CG30376 DOWNSTREAM CG30375 INTERGENIC
2R	6202293	2R_6202293_SNP [dm3] 2R_10314788_SNP [dm6]	C	T	4.561e^-5	1	INTRON Ndg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	12007433	3L_12007433_SNP [dm3] 3L_12014333_SNP [dm6]	A	T	4.744e^-5	1	INTRON rols
3R	16406530	3R_16406530_SNP [dm3] 3R_20580808_SNP [dm6]	G	A	4.755e^-5	1	SYNONYMOUS_CODING CG34008 UPSTREAM EloB DOWNSTREAM Srp14 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9783526	2R_9783526_SNP [dm3] 2R_13896021_SNP [dm6]	A	G	4.801e^-5	1	INTRON shot
3L	12373199	3L_12373199_INS [dm3] 3L_12380099_INS [dm6]	A	ATACAGAATACAGAATACAG...	4.882e^-5	1	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12617160	3R_12617160_SNP [dm3] 3R_16791438_SNP [dm6]	C	T	5.020e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13692743	2L_13692743_SNP [dm3] 2L_13692743_SNP [dm6]	T	C	5.056e^-5	1	INTRON CG31814
2L	14366958	2L_14366958_SNP [dm3] 2L_14366958_SNP [dm6]	T	G	5.074e^-5	1	DOWNSTREAM spel1 INTERGENIC
2R	4762657	2R_4762657_SNP [dm3] 2R_8875152_SNP [dm6]	T	A	5.152e^-5	1	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	5.214e^-5	1	INTERGENIC
3R	25532828	3R_25532828_SNP [dm3] 3R_29707106_SNP [dm6]	C	A	5.261e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7550795	2R_7550795_SNP [dm3] 2R_11663290_SNP [dm6]	C	G	5.275e^-5	1	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18999372	X_18999372_SNP [dm3] X_19105339_SNP [dm6]	G	A	5.294e^-5	1	INTERGENIC
X	16263132	X_16263132_SNP [dm3] X_16369099_SNP [dm6]	A	G	5.473e^-5	1	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
2R	10292473	2R_10292473_SNP [dm3] 2R_14404968_SNP [dm6]	A	G	5.504e^-5	1	INTERGENIC
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	5.512e^-5	1	INTERGENIC
3R	2509460	3R_2509460_DEL [dm3] 3R_6683738_DEL [dm6]	TAATATACA	T	5.553e^-5	1	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13154027	2L_13154027_SNP [dm3] 2L_13154027_SNP [dm6]	A	T	5.556e^-5	1	INTERGENIC
2L	8745029	2L_8745029_SNP [dm3] 2L_8745029_SNP [dm6]	G	A	5.558e^-5	1	INTERGENIC
3R	25532797	3R_25532797_SNP [dm3] 3R_29707075_SNP [dm6]	C	A	5.718e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12374991	3L_12374991_SNP [dm3] 3L_12381891_SNP [dm6]	C	T	5.762e^-5	1	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	18198297	3L_18198297_SNP [dm3] 3L_18205197_SNP [dm6]	C	G	5.775e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15932419	3L_15932419_DEL [dm3] 3L_15939319_DEL [dm6]	ATATA	A	5.787e^-5	1	INTRON Pka-C3
3R	4687412	3R_4687412_SNP [dm3] 3R_8861690_SNP [dm6]	A	G	5.805e^-5	1	UPSTREAM tRNA:R:85Ca INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8146739	3L_8146739_DEL [dm3] 3L_8153639_DEL [dm6]	GTG	G	5.839e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16406780	3R_16406780_SNP [dm3] 3R_20581058_SNP [dm6]	A	C	5.927e^-5	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22434615	3R_22434615_SNP [dm3] 3R_26608893_SNP [dm6]	A	T	6.085e^-5	1	DOWNSTREAM CR44951 INTERGENIC
2L	13153640	2L_13153640_SNP [dm3] 2L_13153640_SNP [dm6]	G	A	6.232e^-5	1	INTERGENIC
2R	1345770	2R_1345770_SNP [dm3] 2R_5458265_SNP [dm6]	G	T	6.496e^-5	1	INTERGENIC
3L	2376490	3L_2376490_SNP [dm3] 3L_2376490_SNP [dm6]	G	A	6.531e^-5	1	UTR_3_PRIME CG15877 DOWNSTREAM CG9004
2L	14550680	2L_14550680_SNP [dm3] 2L_14550680_SNP [dm6]	T	C	6.609e^-5	1	EXON CR44853	TF binding site BDTNP1_TFBS_twi
3L	2376769	3L_2376769_SNP [dm3] 3L_2376769_SNP [dm6]	G	C	6.620e^-5	1	SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004
2L	17367055	2L_17367055_SNP [dm3] 2L_17367055_SNP [dm6]	A	G	6.639e^-5	1	DOWNSTREAM Lrch INTERGENIC
3L	10420961	3L_10420961_SNP [dm3] 3L_10427861_SNP [dm6]	G	A	6.722e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	24184051	3R_24184051_SNP [dm3] 3R_28358329_SNP [dm6]	C	T	6.760e^-5	1	INTERGENIC
2L	13154087	2L_13154087_SNP [dm3] 2L_13154087_SNP [dm6]	A	G	6.783e^-5	1	INTERGENIC
2L	11553207	2L_11553207_SNP [dm3] 2L_11553207_SNP [dm6]	G	T	6.847e^-5	1	INTERGENIC
3R	23729648	3R_23729648_SNP [dm3] 3R_27903926_SNP [dm6]	G	A	6.891e^-5	1	INTRON CG34353
2L	13154078	2L_13154078_DEL [dm3] 2L_13154078_DEL [dm6]	ATATAATA	T	6.922e^-5	1	INTERGENIC
2L	13154088	2L_13154088_SNP [dm3] 2L_13154088_SNP [dm6]	A	C	6.957e^-5	1	INTERGENIC
2R	17152445	2R_17152445_SNP [dm3] 2R_21264940_SNP [dm6]	A	G	6.971e^-5	1	UTR_3_PRIME CG30391 INTRON Rgk3
2R	16379721	2R_16379721_SNP [dm3] 2R_20492216_SNP [dm6]	C	G	7.106e^-5	1	EXON CR44643
3R	23261135	3R_23261135_SNP [dm3] 3R_27435413_SNP [dm6]	T	C	7.195e^-5	1	INTRON side
3L	12491551	3L_12491551_SNP [dm3] 3L_12498451_SNP [dm6]	C	T	7.459e^-5	1	UTR_3_PRIME CG10638 UPSTREAM CR43868
3R	17142955	3R_17142955_SNP [dm3] 3R_21317233_SNP [dm6]	C	T	7.473e^-5	1	DOWNSTREAM mir-4951 EXON Hsromega
2R	7125139	2R_7125139_SNP [dm3] 2R_11237634_SNP [dm6]	A	G	7.494e^-5	1	UTR_5_PRIME CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13154064	2L_13154064_DEL [dm3] 2L_13154064_DEL [dm6]	ATTCGTTT	A	7.519e^-5	1	INTERGENIC
2L	7094513	2L_7094513_DEL [dm3] 2L_7094513_DEL [dm6]	TT	A	7.525e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10902388	X_10902388_SNP [dm3] X_11008355_SNP [dm6]	C	G	7.608e^-5	1	INTRON CG42339
3R	14931218	3R_14931218_SNP [dm3] 3R_19105496_SNP [dm6]	C	G	7.620e^-5	1	INTRON CG6040
3R	7632707	3R_7632707_SNP [dm3] 3R_11806985_SNP [dm6]	T	A	7.689e^-5	1	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19653030	2R_19653030_SNP [dm3] 2R_23765507_SNP [dm6]	C	A	7.713e^-5	1	INTRON CG9850
2R	14595683	2R_14595683_SNP [dm3] 2R_18708178_SNP [dm6]	A	T	7.714e^-5	1	UTR_3_PRIME CG15073 & 1 other
X	15429465	X_15429465_SNP [dm3] X_15535432_SNP [dm6]	A	C	7.753e^-5	1	INTRON Ac13E
2L	11553617	2L_11553617_SNP [dm3] 2L_11553617_SNP [dm6]	A	T	7.873e^-5	1	INTERGENIC
3R	8523278	3R_8523278_SNP [dm3] 3R_12697556_SNP [dm6]	T	A	7.947e^-5	1	UPSTREAM Past1 DOWNSTREAM NijC INTRON Past1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	9988163	X_9988163_SNP [dm3] X_10094130_SNP [dm6]	T	C	7.948e^-5	1	INTRON RhoU
3L	9618082	3L_9618082_SNP [dm3] 3L_9624982_SNP [dm6]	A	G	8.000e^-5	1	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6848432	2L_6848432_SNP [dm3] 2L_6848432_SNP [dm6]	G	T	8.086e^-5	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1371665	2L_1371665_SNP [dm3] 2L_1371665_SNP [dm6]	G	T	8.121e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25532705	3R_25532705_SNP [dm3] 3R_29706983_SNP [dm6]	G	A	8.123e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15071260	3R_15071260_DEL [dm3] 3R_19245538_DEL [dm6]	CTATAGA	T	8.181e^-5	1	SPLICE_SITE_REGION unc79 INTRON unc79
2L	529575	2L_529575_SNP [dm3] 2L_529575_SNP [dm6]	A	T	8.257e^-5	1	INTRON ush	regulatory region REDfly_CRMs
3L	12343484	3L_12343484_SNP [dm3] 3L_12350384_SNP [dm6]	T	A	8.469e^-5	1	INTRON CrzR
X	12749430	X_12749430_SNP [dm3] X_12855397_SNP [dm6]	G	T	8.534e^-5	1	DOWNSTREAM CG4661 INTRON Pde9
3R	8522728	3R_8522728_SNP [dm3] 3R_12697006_SNP [dm6]	G	T	8.558e^-5	1	UTR_3_PRIME NijC UPSTREAM Past1 INTRON NijC
3R	19651488	3R_19651488_SNP [dm3] 3R_23825766_SNP [dm6]	T	C	8.563e^-5	1	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13913558	3L_13913558_DEL [dm3] 3L_13920458_DEL [dm6]	TTAAAACTTCTTCCTAGT...	T	8.575e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14931317	3R_14931317_SNP [dm3] 3R_19105595_SNP [dm6]	G	T	8.640e^-5	1	INTRON CG6040
2R	19634477	2R_19634477_SNP [dm3] 2R_23746954_SNP [dm6]	T	C	8.722e^-5	1	UPSTREAM CG13560 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	18386696	3L_18386696_SNP [dm3] 3L_18393596_SNP [dm6]	T	C	8.754e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19648138	3R_19648138_SNP [dm3] 3R_23822416_SNP [dm6]	A	G	8.774e^-5	1	INTRON CG34355
3R	18871461	3R_18871461_SNP [dm3] 3R_23045739_SNP [dm6]	A	G	8.836e^-5	1	INTRON CG17121
2L	3856510	2L_3856510_SNP [dm3] 2L_3856510_SNP [dm6]	C	T	8.882e^-5	1	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	16847806	2R_16847806_SNP [dm3] 2R_20960301_SNP [dm6]	T	C	8.945e^-5	1	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1146483	X_1146483_SNP [dm3] X_1252450_SNP [dm6]	T	G	8.993e^-5	1	INTRON Atf3
3R	19901295	3R_19901295_SNP [dm3] 3R_24075573_SNP [dm6]	C	T	9.023e^-5	1	INTRON 4EHP
2R	11467331	2R_11467331_SNP [dm3] 2R_15579826_SNP [dm6]	G	T	9.069e^-5	1	INTERGENIC
3L	6599057	3L_6599057_SNP [dm3] 3L_6605957_SNP [dm6]	G	T	9.073e^-5	1	UTR_5_PRIME zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_sens
2L	6801286	2L_6801286_SNP [dm3] 2L_6801286_SNP [dm6]	C	T	9.144e^-5	1	UPSTREAM CG17376 DOWNSTREAM CG17377 INTERGENIC	regulatory region REDfly_CRMs
2L	13151164	2L_13151164_SNP [dm3] 2L_13151164_SNP [dm6]	G	T	9.330e^-5	1	INTERGENIC
3R	2675208	3R_2675208_SNP [dm3] 3R_6849486_SNP [dm6]	T	G	9.359e^-5	1	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	15789105	3L_15789105_INS [dm3] 3L_15796005_INS [dm6]	T	TCTGT	9.360e^-5	1	INTERGENIC
2L	2903316	2L_2903316_SNP [dm3] 2L_2903316_SNP [dm6]	A	G	9.415e^-5	1	INTRON lilli	TF binding site mE1_TFBS_chinmo
3R	6151397	3R_6151397_INS [dm3] 3R_10325675_INS [dm6]	A	AGAATAAA	9.429e^-5	1	INTRON Bruce
3R	4022486	3R_4022486_SNP [dm3] 3R_8196764_SNP [dm6]	A	C	9.476e^-5	1	DOWNSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_sens
2L	16126971	2L_16126971_SNP [dm3] 2L_16126971_SNP [dm6]	C	T	9.485e^-5	1	INTERGENIC
3L	6598992	3L_6598992_SNP [dm3] 3L_6605892_SNP [dm6]	T	C	9.700e^-5	1	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	11553613	2L_11553613_SNP [dm3] 2L_11553613_SNP [dm6]	A	C	9.730e^-5	1	INTERGENIC
3L	2802252	3L_2802252_SNP [dm3] 3L_2802252_SNP [dm6]	G	C	9.753e^-5	1	INTRON CG43444
2L	13944264	2L_13944264_SNP [dm3] 2L_13944264_SNP [dm6]	T	C	9.767e^-5	1	DOWNSTREAM CG16884 INTRON Ance-3
2L	13692696	2L_13692696_SNP [dm3] 2L_13692696_SNP [dm6]	A	G	9.806e^-5	1	INTRON CG31814
3L	13914390	3L_13914390_SNP [dm3] 3L_13921290_SNP [dm6]	T	C	9.831e^-5	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	6752383	2L_6752383_SNP [dm3] 2L_6752383_SNP [dm6]	A	T	9.890e^-5	1	INTRON CG11221
3R	25533743	3R_25533743_SNP [dm3] 3R_29708021_SNP [dm6]	C	T	9.891e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2634877	3L_2634877_SNP [dm3] 3L_2634877_SNP [dm6]	A	T	9.907e^-5	1	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16849739	X_16849739_SNP [dm3] X_16955706_SNP [dm6]	C	A	9.931e^-5	1	UTR_3_PRIME RhoGAP15B DOWNSTREAM CG9086	TF binding site mE1_TFBS_inv
3L	3022152	3L_3022152_SNP [dm3] 3L_3022152_SNP [dm6]	A	T	1.005e^-4	1	INTERGENIC
3R	9540238	3R_9540238_SNP [dm3] 3R_13714516_SNP [dm6]	G	C	1.010e^-4	1	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8613417	3R_8613417_SNP [dm3] 3R_12787695_SNP [dm6]	C	T	1.018e^-4	1	INTERGENIC
2L	10946685	2L_10946685_SNP [dm3] 2L_10946685_SNP [dm6]	G	C	1.018e^-4	1	INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9018904	3L_9018904_SNP [dm3] 3L_9025804_SNP [dm6]	G	A	1.020e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11553622	2L_11553622_SNP [dm3] 2L_11553622_SNP [dm6]	A	C	1.029e^-4	1	INTERGENIC
3L	13423522	3L_13423522_SNP [dm3] 3L_13430422_SNP [dm6]	G	A	1.037e^-4	1	SYNONYMOUS_CODING CG10713	TF binding site mE1_TFBS_chinmo
2R	17152423	2R_17152423_SNP [dm3] 2R_21264918_SNP [dm6]	T	C	1.039e^-4	1	UTR_3_PRIME CG30391 INTRON Rgk3
2R	11680605	2R_11680605_SNP [dm3] 2R_15793100_SNP [dm6]	G	T	1.039e^-4	1	UPSTREAM tun INTRON Zasp52
3L	2376621	3L_2376621_SNP [dm3] 3L_2376621_SNP [dm6]	C	T	1.043e^-4	1	NON_SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
2R	7385416	2R_7385416_SNP [dm3] 2R_11497911_SNP [dm6]	A	G	1.059e^-4	1	INTRON inv
3R	18200977	3R_18200977_SNP [dm3] 3R_22375255_SNP [dm6]	A	G	1.068e^-4	1	SYNONYMOUS_CODING CG7069 UPSTREAM CG18596	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	11711382	2R_11711382_DEL [dm3] 2R_15823877_DEL [dm6]	AT	A	1.071e^-4	1	INTRON tun	TF binding site mE1_TFBS_cad
3L	10827893	3L_10827893_SNP [dm3] 3L_10834793_SNP [dm6]	A	T	1.090e^-4	1	INTERGENIC
3R	9540284	3R_9540284_SNP [dm3] 3R_13714562_SNP [dm6]	C	G	1.103e^-4	1	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	12614693	3R_12614693_SNP [dm3] 3R_16788971_SNP [dm6]	T	C	1.106e^-4	1	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14635901	2R_14635901_SNP [dm3] 2R_18748396_SNP [dm6]	C	T	1.107e^-4	1	SYNONYMOUS_CODING Hs3st-A
2R	13843067	2R_13843067_SNP [dm3] 2R_17955562_SNP [dm6]	C	G	1.118e^-4	1	SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
3L	6599049	3L_6599049_SNP [dm3] 3L_6605949_SNP [dm6]	A	T	1.118e^-4	1	START_GAINED zpg UTR_5_PRIME zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_sens
3L	6599050	3L_6599050_SNP [dm3] 3L_6605950_SNP [dm6]	A	T	1.118e^-4	1	UTR_5_PRIME zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_sens
2L	13129848	2L_13129848_SNP [dm3] 2L_13129848_SNP [dm6]	C	T	1.124e^-4	1	UPSTREAM CG5122 INTERGENIC
2L	14843809	2L_14843809_SNP [dm3] 2L_14843809_SNP [dm6]	G	T	1.136e^-4	1	DOWNSTREAM CG42682 INTERGENIC
2L	13154131	2L_13154131_SNP [dm3] 2L_13154131_SNP [dm6]	C	A	1.138e^-4	1	INTERGENIC
3R	3769204	3R_3769204_SNP [dm3] 3R_7943482_SNP [dm6]	A	T	1.140e^-4	1	INTRON dsx
3L	2376457	3L_2376457_SNP [dm3] 3L_2376457_SNP [dm6]	T	A	1.146e^-4	1	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3R	21947481	3R_21947481_SNP [dm3] 3R_26121759_SNP [dm6]	C	T	1.156e^-4	1	INTRON CG31324
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	1.168e^-4	1	INTERGENIC
2L	3438275	2L_3438275_SNP [dm3] 2L_3438275_SNP [dm6]	C	A	1.173e^-4	1	INTERGENIC
X	14793308	X_14793308_SNP [dm3] X_14899275_SNP [dm6]	G	T	1.180e^-4	1	INTRON Flo2
X	18990386	X_18990386_SNP [dm3] X_19096353_SNP [dm6]	G	A	1.184e^-4	1	INTERGENIC
2L	13154123	2L_13154123_SNP [dm3] 2L_13154123_SNP [dm6]	A	T	1.189e^-4	1	INTERGENIC
3R	18569293	3R_18569293_SNP [dm3] 3R_22743571_SNP [dm6]	T	G	1.194e^-4	1	DOWNSTREAM CG6985 INTRON vret	TF binding site mE1_TFBS_cad
X	9431855	X_9431855_SNP [dm3] X_9537822_SNP [dm6]	C	T	1.195e^-4	1	INTRON CG32700
3R	2509451	3R_2509451_SNP [dm3] 3R_6683729_SNP [dm6]	A	C	1.195e^-4	1	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17267767	3R_17267767_SNP [dm3] 3R_21442045_SNP [dm6]	C	G	1.200e^-4	1	SYNONYMOUS_CODING lbe
2L	14506636	2L_14506636_SNP [dm3] 2L_14506636_SNP [dm6]	C	A	1.206e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	1.214e^-4	1	INTERGENIC
3L	2376431	3L_2376431_SNP [dm3] 3L_2376431_SNP [dm6]	G	A	1.218e^-4	1	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
2R	7125197	2R_7125197_SNP [dm3] 2R_11237692_SNP [dm6]	A	G	1.223e^-4	1	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3046249	3L_3046249_SNP [dm3] 3L_3046249_SNP [dm6]	T	C	1.227e^-4	1	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	7656074	3R_7656074_SNP [dm3] 3R_11830352_SNP [dm6]	T	A	1.232e^-4	1	INTRON CG6959
3L	2378408	3L_2378408_SNP [dm3] 3L_2378408_SNP [dm6]	C	T	1.235e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25224658	3R_25224658_SNP [dm3] 3R_29398936_SNP [dm6]	A	C	1.256e^-4	1	INTRON Ptp99A
3R	26478927	3R_26478927_SNP [dm3] 3R_30653205_SNP [dm6]	A	C	1.258e^-4	1	INTERGENIC
2L	8741093	2L_8741093_SNP [dm3] 2L_8741093_SNP [dm6]	T	G	1.268e^-4	1	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	3547493	3R_3547493_SNP [dm3] 3R_7721771_SNP [dm6]	A	G	1.274e^-4	1	UPSTREAM CG2616 DOWNSTREAM CR44260 INTERGENIC
3L	5668658	3L_5668658_SNP [dm3] 3L_5675558_SNP [dm6]	T	A	1.275e^-4	1	INTRON sif
3L	9619431	3L_9619431_SNP [dm3] 3L_9626331_SNP [dm6]	T	C	1.276e^-4	1	NON_SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16230634	3R_16230634_SNP [dm3] 3R_20404912_SNP [dm6]	C	G	1.278e^-4	1	INTRON Gfrl
X	9431881	X_9431881_DEL [dm3] X_9537848_DEL [dm6]	ATTTTGGTTGGTA...	C	1.287e^-4	1	INTRON CG32700
3L	15789071	3L_15789071_SNP [dm3] 3L_15795971_SNP [dm6]	C	G	1.305e^-4	1	INTERGENIC
3R	17266006	3R_17266006_SNP [dm3] 3R_21440284_SNP [dm6]	G	T	1.310e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9901239	2R_9901239_DEL [dm3] 2R_14013734_DEL [dm6]	TT	T	1.315e^-4	1	INTRON mam
2R	11618564	2R_11618564_SNP [dm3] 2R_15731059_SNP [dm6]	T	C	1.326e^-4	1	INTRON CG30089
2L	13696684	2L_13696684_SNP [dm3] 2L_13696684_SNP [dm6]	G	T	1.327e^-4	1	INTRON CG31814
2L	17535104	2L_17535104_SNP [dm3] 2L_17535104_SNP [dm6]	T	C	1.336e^-4	1	INTERGENIC
3R	2915761	3R_2915761_SNP [dm3] 3R_7090039_SNP [dm6]	G	T	1.353e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	10808095	2R_10808095_INS [dm3] 2R_14920590_INS [dm6]	T	TGTT	1.354e^-4	1	INTRON CG10249	TF binding site mE1_TFBS_cnc
3R	15448936	3R_15448936_SNP [dm3] 3R_19623214_SNP [dm6]	C	G	1.358e^-4	1	INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2L	13154000	2L_13154000_DEL [dm3] 2L_13154000_DEL [dm6]	TGAGCA	T	1.368e^-4	1	INTERGENIC
3R	22439123	3R_22439123_SNP [dm3] 3R_26613401_SNP [dm6]	A	G	1.369e^-4	1	INTERGENIC
2L	13154047	2L_13154047_DEL [dm3] 2L_13154047_DEL [dm6]	TTATCGAAAAAATCA...	T	1.373e^-4	1	INTERGENIC
3L	18307752	3L_18307752_SNP [dm3] 3L_18314652_SNP [dm6]	G	A	1.378e^-4	1	INTERGENIC
2L	17444982	2L_17444982_SNP [dm3] 2L_17444982_SNP [dm6]	C	G	1.384e^-4	1	INTRON dl
2L	3462921	2L_3462921_SNP [dm3] 2L_3462921_SNP [dm6]	A	T	1.389e^-4	1	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971	transposable element FlyBase
2R	11618430	2R_11618430_SNP [dm3] 2R_15730925_SNP [dm6]	T	G	1.410e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11618438	2R_11618438_SNP [dm3] 2R_15730933_SNP [dm6]	T	A	1.410e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5425286	3L_5425286_SNP [dm3] 3L_5432186_SNP [dm6]	A	G	1.415e^-4	1	INTRON CG34391	TF binding site mE1_TFBS_inv
X	14607525	X_14607525_SNP [dm3] X_14713492_SNP [dm6]	A	C	1.415e^-4	1	INTRON NetB
3R	26728181	3R_26728181_SNP [dm3] 3R_30902459_SNP [dm6]	G	A	1.417e^-4	1	UPSTREAM CG33483 INTERGENIC
3R	25532965	3R_25532965_SNP [dm3] 3R_29707243_SNP [dm6]	G	A	1.420e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12354660	2R_12354660_SNP [dm3] 2R_16467155_SNP [dm6]	G	A	1.421e^-4	1	NON_SYNONYMOUS_CODING CheB53a
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	1.432e^-4	1	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3L	3036305	3L_3036305_SNP [dm3] 3L_3036305_SNP [dm6]	C	A	1.433e^-4	1	INTRON CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22312347	3R_22312347_SNP [dm3] 3R_26486625_SNP [dm6]	T	C	1.436e^-4	1	INTRON plum
2L	13171424	2L_13171424_SNP [dm3] 2L_13171424_SNP [dm6]	C	G	1.438e^-4	1	SYNONYMOUS_CODING Sfmbt
3R	17528556	3R_17528556_SNP [dm3] 3R_21702834_SNP [dm6]	G	C	1.447e^-4	1	INTRON CG31176
3L	3046973	3L_3046973_SNP [dm3] 3L_3046973_SNP [dm6]	T	G	1.456e^-4	1	UPSTREAM Sk2 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	19602292	3R_19602292_SNP [dm3] 3R_23776570_SNP [dm6]	C	G	1.462e^-4	1	DOWNSTREAM Nup98-96 INTRON Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19602295	3R_19602295_SNP [dm3] 3R_23776573_SNP [dm6]	C	T	1.462e^-4	1	DOWNSTREAM Nup98-96 INTRON Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11618521	2R_11618521_SNP [dm3] 2R_15731016_SNP [dm6]	A	T	1.465e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_HSA
2R	9905560	2R_9905560_SNP [dm3] 2R_14018055_SNP [dm6]	A	G	1.472e^-4	1	INTRON mam
2R	6203153	2R_6203153_SNP [dm3] 2R_10315648_SNP [dm6]	T	C	1.477e^-4	1	INTRON Ndg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13526849	2R_13526849_INS [dm3] 2R_17639344_INS [dm6]	A	AA	1.479e^-4	1	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	4164389	3R_4164389_SNP [dm3] 3R_8338667_SNP [dm6]	A	G	1.483e^-4	1	INTERGENIC
2R	10257033	2R_10257033_SNP [dm3] 2R_14369528_SNP [dm6]	T	C	1.496e^-4	1	SPLICE_SITE_REGION CG34444 DOWNSTREAM CG34443 & 1 other INTRON CG34444
2R	14556293	2R_14556293_SNP [dm3] 2R_18668788_SNP [dm6]	G	A	1.497e^-4	1	INTRON edl
2R	6723615	2R_6723615_SNP [dm3] 2R_10836110_SNP [dm6]	C	G	1.505e^-4	1	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
3L	23147647	3L_23147647_SNP [dm3] 3L_23154547_SNP [dm6]	C	T	1.511e^-4	1	INTERGENIC	transposable element FlyBase
3L	3465720	3L_3465720_SNP [dm3] 3L_3465720_SNP [dm6]	T	C	1.518e^-4	1	SYNONYMOUS_CODING armi UPSTREAM CycJ	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19901238	3R_19901238_SNP [dm3] 3R_24075516_SNP [dm6]	C	A	1.518e^-4	1	INTRON 4EHP
3L	12381283	3L_12381283_SNP [dm3] 3L_12388183_SNP [dm6]	C	A	1.521e^-4	1	UPSTREAM Ncc69 INTRON Ncc69
X	18999392	X_18999392_SNP [dm3] X_19105359_SNP [dm6]	T	G	1.522e^-4	1	INTERGENIC
3R	26478928	3R_26478928_SNP [dm3] 3R_30653206_SNP [dm6]	G	T	1.531e^-4	1	INTERGENIC
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	1.539e^-4	1	INTRON nwk
2R	14115890	2R_14115890_SNP [dm3] 2R_18228385_SNP [dm6]	G	T	1.559e^-4	1	EXON CR45310 & 1 other
3R	7632702	3R_7632702_SNP [dm3] 3R_11806980_SNP [dm6]	A	G	1.561e^-4	1	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11268702	3L_11268702_DEL [dm3] 3L_11275602_DEL [dm6]	AA	A	1.563e^-4	1	INTERGENIC
X	16883390	X_16883390_SNP [dm3] X_16989357_SNP [dm6]	T	C	1.567e^-4	1	INTRON CG45002
3R	2522696	3R_2522696_SNP [dm3] 3R_6696974_SNP [dm6]	A	G	1.573e^-4	1	UPSTREAM Ccp84Ac INTERGENIC	TF binding site mE1_TFBS_cad
3R	27431292	3R_27431292_SNP [dm3] 3R_31605570_SNP [dm6]	G	T	1.578e^-4	1	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	3046955	3L_3046955_SNP [dm3] 3L_3046955_SNP [dm6]	T	A	1.596e^-4	1	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	23642762	3R_23642762_SNP [dm3] 3R_27817040_SNP [dm6]	A	G	1.600e^-4	1	INTRON CG34353
3R	10116976	3R_10116976_SNP [dm3] 3R_14291254_SNP [dm6]	A	G	1.627e^-4	1	INTRON CG12207
3R	13958062	3R_13958062_SNP [dm3] 3R_18132340_SNP [dm6]	A	G	1.629e^-4	1	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14601513	2L_14601513_INS [dm3] 2L_14601513_INS [dm6]	T	TG	1.631e^-4	1	INTRON osp	TF binding site mE1_TFBS_HSA
3R	8923237	3R_8923237_SNP [dm3] 3R_13097515_SNP [dm6]	A	C	1.635e^-4	1	INTRON timeout
3R	12496017	3R_12496017_SNP [dm3] 3R_16670295_SNP [dm6]	C	T	1.635e^-4	1	INTRON Ubx
3R	2509443	3R_2509443_SNP [dm3] 3R_6683721_SNP [dm6]	T	C	1.644e^-4	1	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13914415	3L_13914415_SNP [dm3] 3L_13921315_SNP [dm6]	A	G	1.644e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13842651	2R_13842651_SNP [dm3] 2R_17955146_SNP [dm6]	C	T	1.645e^-4	1	DOWNSTREAM PpY-55A EXON CR44418
3R	3830408	3R_3830408_SNP [dm3] 3R_8004686_SNP [dm6]	A	C	1.650e^-4	1	INTRON CG2698
3L	2377706	3L_2377706_SNP [dm3] 3L_2377706_SNP [dm6]	G	A	1.651e^-4	1	UTR_5_PRIME CG45186 UPSTREAM CG15877	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2378077	3L_2378077_SNP [dm3] 3L_2378077_SNP [dm6]	A	T	1.651e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2378268	3L_2378268_SNP [dm3] 3L_2378268_SNP [dm6]	G	A	1.651e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2378329	3L_2378329_SNP [dm3] 3L_2378329_SNP [dm6]	T	A	1.651e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2378390	3L_2378390_SNP [dm3] 3L_2378390_SNP [dm6]	T	C	1.651e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2378418	3L_2378418_MNP [dm3] 3L_2378418_MNP [dm6]	CTTT	AAAA	1.651e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2378428	3L_2378428_DEL [dm3] 3L_2378428_DEL [dm6]	GCAG	G	1.651e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2378805	3L_2378805_SNP [dm3] 3L_2378805_SNP [dm6]	T	C	1.651e^-4	1	UPSTREAM CG45186 INTRON CG45186
3L	2378806	3L_2378806_SNP [dm3] 3L_2378806_SNP [dm6]	C	A	1.651e^-4	1	UPSTREAM CG45186 INTRON CG45186
3L	13913757	3L_13913757_INS [dm3] 3L_13920657_INS [dm6]	C	CCAC	1.651e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14804675	3R_14804675_SNP [dm3] 3R_18978953_SNP [dm6]	G	C	1.657e^-4	1	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
3R	7656680	3R_7656680_SNP [dm3] 3R_11830958_SNP [dm6]	A	C	1.659e^-4	1	INTRON CG6959
3L	9945600	3L_9945600_SNP [dm3] 3L_9952500_SNP [dm6]	T	G	1.664e^-4	1	INTRON CG34356
3R	7686856	3R_7686856_SNP [dm3] 3R_11861134_SNP [dm6]	G	C	1.675e^-4	1	INTRON CG6959
2L	13160374	2L_13160374_SNP [dm3] 2L_13160374_SNP [dm6]	C	T	1.682e^-4	1	UPSTREAM CG5204 DOWNSTREAM Pk34A INTERGENIC
3L	11182405	3L_11182405_SNP [dm3] 3L_11189305_SNP [dm6]	C	A	1.688e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	3562317	3L_3562317_SNP [dm3] 3L_3562317_SNP [dm6]	T	A	1.688e^-4	1	INTRON Eip63E
2R	7551120	2R_7551120_SNP [dm3] 2R_11663615_SNP [dm6]	C	T	1.704e^-4	1	INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19901289	3R_19901289_SNP [dm3] 3R_24075567_SNP [dm6]	A	T	1.705e^-4	1	INTRON 4EHP
2R	4762621	2R_4762621_SNP [dm3] 2R_8875116_SNP [dm6]	T	A	1.727e^-4	1	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16454170	2R_16454170_SNP [dm3] 2R_20566665_SNP [dm6]	C	T	1.728e^-4	1	INTRON qsm
2L	3240390	2L_3240390_DEL [dm3] 2L_3240390_DEL [dm6]	TGA	T	1.733e^-4	1	INTERGENIC
X	14708443	X_14708443_INS [dm3] X_14814410_INS [dm6]	A	AAAGACT	1.734e^-4	1	INTRON rut
3L	3668807	3L_3668807_SNP [dm3] 3L_3668807_SNP [dm6]	C	T	1.747e^-4	1	INTERGENIC
X	16083112	X_16083112_SNP [dm3] X_16189079_SNP [dm6]	A	T	1.750e^-4	1	INTERGENIC
2L	9194264	2L_9194264_SNP [dm3] 2L_9194264_SNP [dm6]	C	G	1.753e^-4	1	INTRON tai
X	22053198	X_22053198_DEL [dm3] X_22651362_DEL [dm6]	ACATAAATGAAATGAAA...	GT	1.755e^-4	1	INTERGENIC
3R	22439147	3R_22439147_SNP [dm3] 3R_26613425_SNP [dm6]	G	A	1.765e^-4	1	INTERGENIC
3L	2377380	3L_2377380_SNP [dm3] 3L_2377380_SNP [dm6]	T	G	1.768e^-4	1	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18023372	2L_18023372_SNP [dm3] 2L_18023372_SNP [dm6]	G	A	1.772e^-4	1	INTRON rdo
X	18996936	X_18996936_SNP [dm3] X_19102903_SNP [dm6]	C	G	1.777e^-4	1	INTERGENIC
2L	892376	2L_892376_DEL [dm3] 2L_892376_DEL [dm6]	TCGTTA	T	1.794e^-4	1	INTERGENIC
2L	11231810	2L_11231810_SNP [dm3] 2L_11231810_SNP [dm6]	G	A	1.797e^-4	1	INTRON ab
2L	8151213	2L_8151213_SNP [dm3] 2L_8151213_SNP [dm6]	T	C	1.805e^-4	1	INTRON CG8552 & 1 other
3R	18172939	3R_18172939_SNP [dm3] 3R_22347217_SNP [dm6]	T	A	1.834e^-4	1	INTERGENIC
3L	3668796	3L_3668796_SNP [dm3] 3L_3668796_SNP [dm6]	T	G	1.839e^-4	1	INTERGENIC
X	9944472	X_9944472_INS [dm3] X_10050439_INS [dm6]	A	ACA	1.841e^-4	1	UTR_3_PRIME Cht6 DOWNSTREAM Yp2
2L	3176107	2L_3176107_SNP [dm3] 2L_3176107_SNP [dm6]	G	T	1.844e^-4	1	INTRON CG34393
3L	14138108	3L_14138108_SNP [dm3] 3L_14145008_SNP [dm6]	A	C	1.848e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9528251	2R_9528251_SNP [dm3] 2R_13640746_SNP [dm6]	A	C	1.865e^-4	1	INTRON fas
2R	8724575	2R_8724575_SNP [dm3] 2R_12837070_SNP [dm6]	G	A	1.878e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13843166	2L_13843166_SNP [dm3] 2L_13843166_SNP [dm6]	A	C	1.879e^-4	1	SYNONYMOUS_CODING CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12702007	2L_12702007_SNP [dm3] 2L_12702007_SNP [dm6]	T	C	1.905e^-4	1	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	7622684	2R_7622684_INS [dm3] 2R_11735179_INS [dm6]	C	CACAAC	1.910e^-4	1	INTERGENIC
2R	19223979	2R_19223979_SNP [dm3] 2R_23336456_SNP [dm6]	C	T	1.911e^-4	1	INTERGENIC
2L	3508820	2L_3508820_SNP [dm3] 2L_3508820_SNP [dm6]	C	G	1.927e^-4	1	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
X	15811132	X_15811132_SNP [dm3] X_15917099_SNP [dm6]	C	T	1.939e^-4	1	SYNONYMOUS_CODING CG8909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8741096	2L_8741096_SNP [dm3] 2L_8741096_SNP [dm6]	A	T	1.941e^-4	1	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	8430884	2R_8430884_SNP [dm3] 2R_12543379_SNP [dm6]	A	G	1.948e^-4	1	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6670092	2L_6670092_SNP [dm3] 2L_6670092_SNP [dm6]	T	G	1.955e^-4	1	NON_SYNONYMOUS_CODING cup START_GAINED CG34310 UTR_5_PRIME CG34310 DOWNSTREAM Spn27A
X	18880807	X_18880807_SNP [dm3] X_18986774_SNP [dm6]	T	C	1.959e^-4	1	INTRON CG43759
2R	5604157	2R_5604157_SNP [dm3] 2R_9716652_SNP [dm6]	C	T	1.960e^-4	1	NON_SYNONYMOUS_CODING sqa DOWNSTREAM dap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14667020	2R_14667020_SNP [dm3] 2R_18779515_SNP [dm6]	G	A	1.962e^-4	1	INTERGENIC
3L	7344626	3L_7344626_SNP [dm3] 3L_7351526_SNP [dm6]	C	A	1.969e^-4	1	SYNONYMOUS_CODING qm
3L	3036361	3L_3036361_SNP [dm3] 3L_3036361_SNP [dm6]	A	G	1.971e^-4	1	INTRON CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	19175896	X_19175896_SNP [dm3] X_19281863_SNP [dm6]	A	G	1.972e^-4	1	UTR_3_PRIME CG8034 DOWNSTREAM CG8034
X	4330885	X_4330885_SNP [dm3] X_4436852_SNP [dm6]	T	C	1.976e^-4	1	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11618538	2R_11618538_SNP [dm3] 2R_15731033_SNP [dm6]	A	T	1.995e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_HSA
3R	14952922	3R_14952922_SNP [dm3] 3R_19127200_SNP [dm6]	T	C	2.001e^-4	1	SYNONYMOUS_CODING CG6040
2L	8741098	2L_8741098_SNP [dm3] 2L_8741098_SNP [dm6]	C	A	2.013e^-4	1	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	2378436	3L_2378436_SNP [dm3] 3L_2378436_SNP [dm6]	G	A	2.019e^-4	1	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4807806	2L_4807806_SNP [dm3] 2L_4807806_SNP [dm6]	T	A	2.021e^-4	1	INTERGENIC
2R	14595914	2R_14595914_SNP [dm3] 2R_18708409_SNP [dm6]	G	A	2.021e^-4	1	DOWNSTREAM CG15073 INTRON CG15087
2R	16818328	2R_16818328_SNP [dm3] 2R_20930823_SNP [dm6]	A	G	2.026e^-4	1	INTRON Rx
X	8706996	X_8706996_SNP [dm3] X_8812963_SNP [dm6]	T	C	2.032e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9621258	3R_9621258_SNP [dm3] 3R_13795536_SNP [dm6]	G	C	2.048e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	19697115	2L_19697115_SNP [dm3] 2L_19697115_SNP [dm6]	A	G	2.049e^-4	1	INTRON Lar	TF binding site mE1_TFBS_HSA
3R	25534544	3R_25534544_SNP [dm3] 3R_29708822_SNP [dm6]	G	C	2.057e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15312785	X_15312785_DEL [dm3] X_15418752_DEL [dm6]	TT	T	2.061e^-4	1	INTRON Cngl
3L	13913830	3L_13913830_SNP [dm3] 3L_13920730_SNP [dm6]	A	C	2.062e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17535129	2L_17535129_SNP [dm3] 2L_17535129_SNP [dm6]	T	A	2.069e^-4	1	INTERGENIC
2L	11272319	2L_11272319_SNP [dm3] 2L_11272319_SNP [dm6]	A	G	2.077e^-4	1	INTRON cana	TF binding site mE1_TFBS_Trl
2L	3462929	2L_3462929_SNP [dm3] 2L_3462929_SNP [dm6]	A	G	2.081e^-4	1	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971	transposable element FlyBase
X	3481263	X_3481263_SNP [dm3] X_3587230_SNP [dm6]	T	G	2.091e^-4	1	INTRON AstA-R1
2L	6848368	2L_6848368_SNP [dm3] 2L_6848368_SNP [dm6]	A	C	2.093e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	25667905	3R_25667905_SNP [dm3] 3R_29842183_SNP [dm6]	C	G	2.093e^-4	1	INTRON Cad99C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9192943	2L_9192943_SNP [dm3] 2L_9192943_SNP [dm6]	C	A	2.096e^-4	1	INTRON tai
2R	9528247	2R_9528247_DEL [dm3] 2R_13640742_DEL [dm6]	GTA	G	2.100e^-4	1	INTRON fas
2L	11272334	2L_11272334_SNP [dm3] 2L_11272334_SNP [dm6]	A	G	2.100e^-4	1	INTRON cana	TF binding site mE1_TFBS_Trl
2R	18308424	2R_18308424_SNP [dm3] 2R_22420919_SNP [dm6]	T	A	2.101e^-4	1	UPSTREAM rad50 & 1 other INTERGENIC
3L	3562344	3L_3562344_SNP [dm3] 3L_3562344_SNP [dm6]	A	T	2.105e^-4	1	INTRON Eip63E
3L	10421005	3L_10421005_SNP [dm3] 3L_10427905_SNP [dm6]	T	C	2.107e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8535877	2R_8535877_SNP [dm3] 2R_12648372_SNP [dm6]	T	G	2.111e^-4	1	UPSTREAM CG8785 INTERGENIC
2L	13154118	2L_13154118_SNP [dm3] 2L_13154118_SNP [dm6]	A	T	2.117e^-4	1	INTERGENIC
3R	18569038	3R_18569038_SNP [dm3] 3R_22743316_SNP [dm6]	T	G	2.132e^-4	1	DOWNSTREAM CG6985 INTRON vret
3R	12672776	3R_12672776_SNP [dm3] 3R_16847054_SNP [dm6]	C	G	2.134e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19178550	2R_19178550_SNP [dm3] 2R_23291027_SNP [dm6]	T	C	2.140e^-4	1	EXON CR44783
3R	5126757	3R_5126757_SNP [dm3] 3R_9301035_SNP [dm6]	G	A	2.141e^-4	1	INTRON CG8861
2R	4791695	2R_4791695_SNP [dm3] 2R_8904190_SNP [dm6]	G	A	2.141e^-4	1	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	2.156e^-4	1	INTRON Cht7
3R	26068776	3R_26068776_SNP [dm3] 3R_30243054_SNP [dm6]	T	A	2.168e^-4	1	SYNONYMOUS_CODING CG9737 DOWNSTREAM CG9733
2R	18308285	2R_18308285_SNP [dm3] 2R_22420780_SNP [dm6]	G	A	2.172e^-4	1	UPSTREAM rad50 & 1 other INTERGENIC
3R	25140970	3R_25140970_INS [dm3] 3R_29315248_INS [dm6]	T	TCT	2.180e^-4	1	DOWNSTREAM Cnx99A INTERGENIC
3L	2550872	3L_2550872_SNP [dm3] 3L_2550872_SNP [dm6]	G	C	2.188e^-4	1	INTRON Spn
3L	7344653	3L_7344653_SNP [dm3] 3L_7351553_SNP [dm6]	A	C	2.196e^-4	1	SYNONYMOUS_CODING qm
3R	13564815	3R_13564815_SNP [dm3] 3R_17739093_SNP [dm6]	C	A	2.211e^-4	1	UPSTREAM TyrRII INTRON TyrRII
X	10511506	X_10511506_SNP [dm3] X_10617473_SNP [dm6]	G	A	2.231e^-4	1	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2818539	2L_2818539_SNP [dm3] 2L_2818539_SNP [dm6]	C	T	2.238e^-4	1	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18533174	3L_18533174_SNP [dm3] 3L_18540074_SNP [dm6]	T	C	2.249e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12765681	2L_12765681_SNP [dm3] 2L_12765681_SNP [dm6]	G	T	2.254e^-4	1	INTERGENIC
X	18997788	X_18997788_DEL [dm3] X_19103755_DEL [dm6]	ACAAGGACAA	A	2.257e^-4	1	INTERGENIC
2L	13151789	2L_13151789_DEL [dm3] 2L_13151789_DEL [dm6]	CTTTCC	C	2.260e^-4	1	INTERGENIC
2R	20352447	2R_20352447_SNP [dm3] 2R_24464924_SNP [dm6]	A	G	2.261e^-4	1	INTRON CG13579	regulatory region REDfly_CRMs
3R	21055829	3R_21055829_SNP [dm3] 3R_25230107_SNP [dm6]	T	G	2.265e^-4	1	INTRON Cad96Cb
X	16404438	X_16404438_SNP [dm3] X_16510405_SNP [dm6]	G	A	2.282e^-4	1	INTRON para
3R	23801572	3R_23801572_SNP [dm3] 3R_27975850_SNP [dm6]	C	G	2.287e^-4	1	INTRON betaTub97EF
2L	5525633	2L_5525633_SNP [dm3] 2L_5525633_SNP [dm6]	C	G	2.289e^-4	1	SYNONYMOUS_CODING CG6907 UPSTREAM Cap-D3 DOWNSTREAM CR44793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10421009	3L_10421009_SNP [dm3] 3L_10427909_SNP [dm6]	G	C	2.296e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14906623	3R_14906623_SNP [dm3] 3R_19080901_SNP [dm6]	C	T	2.300e^-4	1	INTRON cdi
2L	13154106	2L_13154106_SNP [dm3] 2L_13154106_SNP [dm6]	C	T	2.309e^-4	1	INTERGENIC
2R	10264534	2R_10264534_SNP [dm3] 2R_14377029_SNP [dm6]	C	A	2.314e^-4	1	DOWNSTREAM CG30075 INTERGENIC
2L	6672405	2L_6672405_SNP [dm3] 2L_6672405_SNP [dm6]	G	A	2.321e^-4	1	SYNONYMOUS_CODING Spn27A INTRON cup & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	817727	3R_817727_SNP [dm3] 3R_4992005_SNP [dm6]	T	G	2.325e^-4	1	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15462327	3R_15462327_SNP [dm3] 3R_19636605_SNP [dm6]	T	G	2.328e^-4	1	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3R	2241436	3R_2241436_SNP [dm3] 3R_6415714_SNP [dm6]	A	G	2.331e^-4	1	INTRON gpp
2R	10256001	2R_10256001_INS [dm3] 2R_14368496_INS [dm6]	T	TGCGGAGTCTTCT...	2.332e^-4	1	CODON_INSERTION CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
3R	25140968	3R_25140968_SNP [dm3] 3R_29315246_SNP [dm6]	C	G	2.333e^-4	1	DOWNSTREAM Cnx99A INTERGENIC
3R	21202629	3R_21202629_INS [dm3] 3R_25376907_INS [dm6]	G	GAAT	2.342e^-4	1	INTRON Fur1
2R	20348437	2R_20348437_SNP [dm3] 2R_24460914_SNP [dm6]	T	C	2.347e^-4	1	INTRON CG13579
2L	17001187	2L_17001187_SNP [dm3] 2L_17001187_SNP [dm6]	T	G	2.347e^-4	1	INTERGENIC
3R	15519571	3R_15519571_SNP [dm3] 3R_19693849_SNP [dm6]	C	G	2.354e^-4	1	INTRON Naam
2R	20042313	2R_20042313_SNP [dm3] 2R_24154790_SNP [dm6]	C	T	2.356e^-4	1	START_GAINED Dat UTR_5_PRIME Dat INTRON Dat
3L	23147351	3L_23147351_SNP [dm3] 3L_23154251_SNP [dm6]	A	G	2.365e^-4	1	INTERGENIC	transposable element FlyBase
2L	8100948	2L_8100948_SNP [dm3] 2L_8100948_SNP [dm6]	G	A	2.377e^-4	1	INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16266717	3L_16266717_SNP [dm3] 3L_16273617_SNP [dm6]	G	C	2.383e^-4	1	DOWNSTREAM CG13066 INTERGENIC
2R	9723527	2R_9723527_SNP [dm3] 2R_13836022_SNP [dm6]	G	A	2.386e^-4	1	UPSTREAM CG6337 & 1 other INTERGENIC
2R	7564945	2R_7564945_SNP [dm3] 2R_11677440_SNP [dm6]	G	A	2.391e^-4	1	NON_SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
X	14607538	X_14607538_SNP [dm3] X_14713505_SNP [dm6]	A	G	2.393e^-4	1	INTRON NetB
3L	9990642	3L_9990642_SNP [dm3] 3L_9997542_SNP [dm6]	C	G	2.397e^-4	1	INTRON dpr6
3R	20325604	3R_20325604_SNP [dm3] 3R_24499882_SNP [dm6]	G	A	2.398e^-4	1	INTERGENIC
3L	2557318	3L_2557318_SNP [dm3] 3L_2557318_SNP [dm6]	C	G	2.399e^-4	1	INTRON msn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14849385	2R_14849385_SNP [dm3] 2R_18961880_SNP [dm6]	G	A	2.402e^-4	1	INTERGENIC
3L	23147349	3L_23147349_INS [dm3] 3L_23154249_INS [dm6]	G	GTGT	2.417e^-4	1	INTERGENIC	transposable element FlyBase
2L	1712337	2L_1712337_SNP [dm3] 2L_1712337_SNP [dm6]	G	A	2.423e^-4	1	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_chinmo
2R	10009851	2R_10009851_SNP [dm3] 2R_14122346_SNP [dm6]	C	T	2.438e^-4	1	INTRON Prosap
2L	2630591	2L_2630591_SNP [dm3] 2L_2630591_SNP [dm6]	T	G	2.445e^-4	1	INTERGENIC
2R	11618546	2R_11618546_SNP [dm3] 2R_15731041_SNP [dm6]	G	A	2.456e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	17591605	3L_17591605_SNP [dm3] 3L_17598505_SNP [dm6]	T	C	2.458e^-4	1	INTRON Eip74EF	TF binding site mE1_TFBS_cad
3L	1374631	3L_1374631_SNP [dm3] 3L_1374631_SNP [dm6]	A	T	2.472e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19717205	2R_19717205_SNP [dm3] 2R_23829682_SNP [dm6]	T	A	2.477e^-4	1	INTRON CG5549
3R	3553495	3R_3553495_SNP [dm3] 3R_7727773_SNP [dm6]	C	T	2.480e^-4	1	INTERGENIC
2R	6751515	2R_6751515_SNP [dm3] 2R_10864010_SNP [dm6]	C	G	2.483e^-4	1	INTRON CG30015
2L	20527813	2L_20527813_SNP [dm3] 2L_20527813_SNP [dm6]	G	A	2.485e^-4	1	INTERGENIC
3R	26532153	3R_26532153_SNP [dm3] 3R_30706431_SNP [dm6]	G	A	2.494e^-4	1	UPSTREAM CG31010 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18780080	2R_18780080_SNP [dm3] 2R_22892557_SNP [dm6]	A	G	2.494e^-4	1	INTRON MED23
2R	16244463	2R_16244463_SNP [dm3] 2R_20356958_SNP [dm6]	A	C	2.501e^-4	1	INTERGENIC
3L	4283689	3L_4283689_SNP [dm3] 3L_4283689_SNP [dm6]	A	C	2.512e^-4	1	UPSTREAM CG11583 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25090086	3R_25090086_SNP [dm3] 3R_29264364_SNP [dm6]	C	T	2.514e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2078085	2R_2078085_SNP [dm3] 2R_6190580_SNP [dm6]	G	A	2.516e^-4	1	UPSTREAM tRNA:N5:42Ae DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	20739296	2L_20739296_SNP [dm3] 2L_20739296_SNP [dm6]	C	T	2.519e^-4	1	UTR_3_PRIME Fs_2_Ket INTRON Fs_2_Ket
2R	18307923	2R_18307923_SNP [dm3] 2R_22420418_SNP [dm6]	A	G	2.523e^-4	1	UPSTREAM rad50 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	4148596	2R_4148596_SNP [dm3] 2R_8261091_SNP [dm6]	T	C	2.529e^-4	1	NON_SYNONYMOUS_CODING CG2291 DOWNSTREAM CG14759
3R	25664015	3R_25664015_SNP [dm3] 3R_29838293_SNP [dm6]	T	A	2.529e^-4	1	DOWNSTREAM CG15510 INTERGENIC
X	3476140	X_3476140_SNP [dm3] X_3582107_SNP [dm6]	G	A	2.536e^-4	1	INTRON AstA-R1
2L	3462698	2L_3462698_SNP [dm3] 2L_3462698_SNP [dm6]	A	G	2.547e^-4	1	UTR_3_PRIME msl-2 UPSTREAM CG3246 DOWNSTREAM mir-4971
2L	17445031	2L_17445031_SNP [dm3] 2L_17445031_SNP [dm6]	C	G	2.552e^-4	1	INTRON dl
3R	25664327	3R_25664327_SNP [dm3] 3R_29838605_SNP [dm6]	A	G	2.553e^-4	1	INTERGENIC
2L	18726090	2L_18726090_SNP [dm3] 2L_18726090_SNP [dm6]	A	C	2.555e^-4	1	INTRON CG10348
2R	7550071	2R_7550071_SNP [dm3] 2R_11662566_SNP [dm6]	G	A	2.560e^-4	1	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9990662	3L_9990662_INS [dm3] 3L_9997562_INS [dm6]	A	AA	2.569e^-4	1	INTRON dpr6
3R	17774091	3R_17774091_SNP [dm3] 3R_21948369_SNP [dm6]	G	A	2.589e^-4	1	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6683786	3R_6683786_SNP [dm3] 3R_10858064_SNP [dm6]	T	C	2.592e^-4	1	UTR_3_PRIME CG4570 DOWNSTREAM CG14694	TF binding site BDTNP1_TFBS_dl
2L	14483860	2L_14483860_SNP [dm3] 2L_14483860_SNP [dm6]	C	A	2.595e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	25111666	3R_25111666_SNP [dm3] 3R_29285944_SNP [dm6]	G	T	2.602e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	17102989	2R_17102989_SNP [dm3] 2R_21215484_SNP [dm6]	T	G	2.603e^-4	1	UTR_3_PRIME CG15661 UPSTREAM CG4302
3R	9540239	3R_9540239_SNP [dm3] 3R_13714517_SNP [dm6]	A	C	2.621e^-4	1	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	19889760	3R_19889760_SNP [dm3] 3R_24064038_SNP [dm6]	G	A	2.633e^-4	1	SYNONYMOUS_CODING 4EHP DOWNSTREAM 4EHP INTRON 4EHP
X	17230634	X_17230634_SNP [dm3] X_17336601_SNP [dm6]	C	T	2.636e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26478931	3R_26478931_SNP [dm3] 3R_30653209_SNP [dm6]	A	G	2.648e^-4	1	INTERGENIC
3R	12360144	3R_12360144_SNP [dm3] 3R_16534422_SNP [dm6]	T	C	2.656e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18880801	X_18880801_SNP [dm3] X_18986768_SNP [dm6]	A	T	2.671e^-4	1	INTRON CG43759
3R	10052747	3R_10052747_SNP [dm3] 3R_14227025_SNP [dm6]	C	A	2.673e^-4	1	UPSTREAM CG9631 INTERGENIC
3R	20714230	3R_20714230_SNP [dm3] 3R_24888508_SNP [dm6]	C	G	2.682e^-4	1	INTRON CG31121	TF binding site mE1_TFBS_cad
2R	16192422	2R_16192422_SNP [dm3] 2R_20304917_SNP [dm6]	A	G	2.702e^-4	1	SYNONYMOUS_CODING CG11200
3L	9499551	3L_9499551_DEL [dm3] 3L_9506451_DEL [dm6]	AATA	A	2.713e^-4	1	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6833871	2R_6833871_SNP [dm3] 2R_10946366_SNP [dm6]	G	A	2.721e^-4	1	EXON CR45228	TF binding site mE1_TFBS_cad
3L	5852053	3L_5852053_SNP [dm3] 3L_5858953_SNP [dm6]	C	T	2.723e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14012496	3R_14012496_SNP [dm3] 3R_18186774_SNP [dm6]	G	C	2.735e^-4	1	SYNONYMOUS_CODING Arp5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	11735310	2L_11735310_SNP [dm3] 2L_11735310_SNP [dm6]	T	C	2.736e^-4	1	INTERGENIC
3L	12381212	3L_12381212_DEL [dm3] 3L_12388112_DEL [dm6]	TAAGAAAGTAT...	T	2.736e^-4	1	UPSTREAM Ncc69 INTRON Ncc69
3R	9539501	3R_9539501_SNP [dm3] 3R_13713779_SNP [dm6]	A	T	2.748e^-4	1	INTRON CR34044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14708445	X_14708445_DEL [dm3] X_14814412_DEL [dm6]	AT	A	2.764e^-4	1	INTRON rut
3R	19648432	3R_19648432_SNP [dm3] 3R_23822710_SNP [dm6]	C	A	2.766e^-4	1	INTRON CG34355
3R	22353524	3R_22353524_SNP [dm3] 3R_26527802_SNP [dm6]	C	A	2.770e^-4	1	INTRON plum
2L	9194141	2L_9194141_SNP [dm3] 2L_9194141_SNP [dm6]	T	A	2.772e^-4	1	INTRON tai
3L	19354200	3L_19354200_SNP [dm3] 3L_19361100_SNP [dm6]	G	T	2.776e^-4	1	INTRON CG32206
3R	1765034	3R_1765034_SNP [dm3] 3R_5939312_SNP [dm6]	A	G	2.778e^-4	1	INTRON CG34113
3L	10827891	3L_10827891_SNP [dm3] 3L_10834791_SNP [dm6]	G	A	2.781e^-4	1	INTERGENIC
3R	9540394	3R_9540394_SNP [dm3] 3R_13714672_SNP [dm6]	T	A	2.781e^-4	1	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9420244	2R_9420244_SNP [dm3] 2R_13532739_SNP [dm6]	T	C	2.784e^-4	1	UTR_5_PRIME Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	23147311	3L_23147311_SNP [dm3] 3L_23154211_SNP [dm6]	C	T	2.793e^-4	1	INTERGENIC	transposable element FlyBase
3L	23147313	3L_23147313_MNP [dm3] 3L_23154213_MNP [dm6]	GAGC	ACTT	2.793e^-4	1	INTERGENIC	transposable element FlyBase
3L	23147319	3L_23147319_MNP [dm3] 3L_23154219_MNP [dm6]	ACGGC	TTTAT	2.793e^-4	1	INTERGENIC	transposable element FlyBase
3L	16225997	3L_16225997_SNP [dm3] 3L_16232897_SNP [dm6]	C	T	2.795e^-4	1	UPSTREAM PDCD-5 & 1 other DOWNSTREAM MED10 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14340897	2R_14340897_SNP [dm3] 2R_18453392_SNP [dm6]	A	G	2.809e^-4	1	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3R	25534396	3R_25534396_SNP [dm3] 3R_29708674_SNP [dm6]	T	C	2.823e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	2.826e^-4	1	INTRON nwk
3R	13912853	3R_13912853_SNP [dm3] 3R_18087131_SNP [dm6]	T	C	2.829e^-4	1	INTERGENIC
3R	26478872	3R_26478872_SNP [dm3] 3R_30653150_SNP [dm6]	A	G	2.843e^-4	1	INTERGENIC
2R	9905552	2R_9905552_SNP [dm3] 2R_14018047_SNP [dm6]	G	T	2.849e^-4	1	INTRON mam
2R	10185518	2R_10185518_SNP [dm3] 2R_14298013_SNP [dm6]	G	A	2.861e^-4	1	SYNONYMOUS_CODING Ih
2L	9192844	2L_9192844_SNP [dm3] 2L_9192844_SNP [dm6]	G	A	2.865e^-4	1	INTRON tai
2R	10257326	2R_10257326_SNP [dm3] 2R_14369821_SNP [dm6]	C	T	2.873e^-4	1	SYNONYMOUS_CODING CG34444 DOWNSTREAM CG34443 & 1 other
2R	19634486	2R_19634486_SNP [dm3] 2R_23746963_SNP [dm6]	G	A	2.883e^-4	1	UPSTREAM CG13560 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_zfh1
3L	11331657	3L_11331657_SNP [dm3] 3L_11338557_SNP [dm6]	A	C	2.893e^-4	1	INTERGENIC
3L	10363811	3L_10363811_DEL [dm3] 3L_10370711_DEL [dm6]	TT	G	2.903e^-4	1	INTERGENIC
2R	9723533	2R_9723533_SNP [dm3] 2R_13836028_SNP [dm6]	T	C	2.903e^-4	1	UPSTREAM CG6337 & 1 other INTERGENIC
3R	20938571	3R_20938571_SNP [dm3] 3R_25112849_SNP [dm6]	A	C	2.904e^-4	1	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
2L	3306561	2L_3306561_SNP [dm3] 2L_3306561_SNP [dm6]	T	C	2.904e^-4	1	INTRON CG3277
3L	1962914	3L_1962914_SNP [dm3] 3L_1962914_SNP [dm6]	G	T	2.906e^-4	1	UTR_5_PRIME mv UPSTREAM SCOT
2R	5964983	2R_5964983_SNP [dm3] 2R_10077478_SNP [dm6]	G	A	2.908e^-4	1	UPSTREAM egr INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	13558736	3R_13558736_SNP [dm3] 3R_17733014_SNP [dm6]	G	C	2.912e^-4	1	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	18288229	3L_18288229_DEL [dm3] 3L_18295129_DEL [dm6]	AAG	A	2.937e^-4	1	UPSTREAM CG5103 INTRON CR43306	TF binding site mE1_TFBS_Kr
2R	7549932	2R_7549932_SNP [dm3] 2R_11662427_SNP [dm6]	G	A	2.937e^-4	1	INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16192431	2R_16192431_SNP [dm3] 2R_20304926_SNP [dm6]	C	T	2.941e^-4	1	SYNONYMOUS_CODING CG11200
2L	17535142	2L_17535142_SNP [dm3] 2L_17535142_SNP [dm6]	G	C	2.947e^-4	1	INTERGENIC
3R	21441012	3R_21441012_SNP [dm3] 3R_25615290_SNP [dm6]	A	G	2.951e^-4	1	DOWNSTREAM CG5079 INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14470625	2L_14470625_SNP [dm3] 2L_14470625_SNP [dm6]	T	C	2.953e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5431146	2R_5431146_DEL [dm3] 2R_9543641_DEL [dm6]	AG	T	2.972e^-4	1	UTR_3_PRIME CG1888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14981624	2R_14981624_SNP [dm3] 2R_19094119_SNP [dm6]	A	C	2.975e^-4	1	SYNONYMOUS_CODING 5-HT1A DOWNSTREAM Ir56a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7125071	2R_7125071_SNP [dm3] 2R_11237566_SNP [dm6]	G	T	2.986e^-4	1	SYNONYMOUS_CODING CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23261134	3R_23261134_SNP [dm3] 3R_27435412_SNP [dm6]	C	G	2.992e^-4	1	INTRON side
3L	10827887	3L_10827887_SNP [dm3] 3L_10834787_SNP [dm6]	T	A	2.992e^-4	1	INTERGENIC
3R	9895737	3R_9895737_DEL [dm3] 3R_14070015_DEL [dm6]	AA	A	2.993e^-4	1	INTRON foxo
2L	17444937	2L_17444937_SNP [dm3] 2L_17444937_SNP [dm6]	A	T	2.993e^-4	1	INTRON dl
2R	11802568	2R_11802568_SNP [dm3] 2R_15915063_SNP [dm6]	A	T	2.998e^-4	1	UPSTREAM CR44373 INTRON sli
2L	14407694	2L_14407694_INS [dm3] 2L_14407694_INS [dm6]	T	TT	3.025e^-4	1	INTRON elB
X	3716487	X_3716487_SNP [dm3] X_3822454_SNP [dm6]	T	A	3.029e^-4	1	INTRON ec	TF binding site mE1_TFBS_HSA
3R	13908819	3R_13908819_SNP [dm3] 3R_18083097_SNP [dm6]	C	T	3.031e^-4	1	DOWNSTREAM CG14317 INTERGENIC
2R	8839015	2R_8839015_SNP [dm3] 2R_12951510_SNP [dm6]	G	A	3.038e^-4	1	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
3R	2509633	3R_2509633_SNP [dm3] 3R_6683911_SNP [dm6]	C	T	3.039e^-4	1	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7514524	3L_7514524_SNP [dm3] 3L_7521424_SNP [dm6]	G	T	3.063e^-4	1	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	18625825	3R_18625825_SNP [dm3] 3R_22800103_SNP [dm6]	C	T	3.066e^-4	1	INTERGENIC
3R	16406523	3R_16406523_SNP [dm3] 3R_20580801_SNP [dm6]	T	C	3.067e^-4	1	NON_SYNONYMOUS_CODING CG34008 UPSTREAM EloB DOWNSTREAM Srp14 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3962380	2L_3962380_SNP [dm3] 2L_3962380_SNP [dm6]	A	T	3.070e^-4	1	INTRON fred
3L	3558298	3L_3558298_SNP [dm3] 3L_3558298_SNP [dm6]	G	C	3.076e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1342713	2R_1342713_INS [dm3] 2R_5455208_INS [dm6]	T	TAAGATTAAATTGTAGTTTG...	3.077e^-4	1	UTR_3_PRIME laccase2 DOWNSTREAM laccase2
2L	10959645	2L_10959645_SNP [dm3] 2L_10959645_SNP [dm6]	T	C	3.078e^-4	1	INTRON dpr2
2R	10662899	2R_10662899_SNP [dm3] 2R_14775394_SNP [dm6]	G	A	3.081e^-4	1	SYNONYMOUS_CODING kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9539948	3R_9539948_SNP [dm3] 3R_13714226_SNP [dm6]	C	A	3.084e^-4	1	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22753364	3R_22753364_SNP [dm3] 3R_26927642_SNP [dm6]	A	C	3.088e^-4	1	INTRON sda
2R	15902509	2R_15902509_SNP [dm3] 2R_20015004_SNP [dm6]	T	C	3.089e^-4	1	DOWNSTREAM CR44629 INTERGENIC
3L	3047597	3L_3047597_SNP [dm3] 3L_3047597_SNP [dm6]	T	G	3.089e^-4	1	SYNONYMOUS_CODING Sk2 UPSTREAM scramb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12354711	2R_12354711_SNP [dm3] 2R_16467206_SNP [dm6]	G	A	3.093e^-4	1	SPLICE_SITE_REGION CheB53a INTRON CheB53a
3R	23539357	3R_23539357_SNP [dm3] 3R_27713635_SNP [dm6]	C	A	3.113e^-4	1	INTERGENIC
3L	17575750	3L_17575750_SNP [dm3] 3L_17582650_SNP [dm6]	T	C	3.113e^-4	1	INTRON Eip74EF
X	12158909	X_12158909_SNP [dm3] X_12264876_SNP [dm6]	C	G	3.123e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16848102	2R_16848102_SNP [dm3] 2R_20960597_SNP [dm6]	A	G	3.132e^-4	1	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	12717521	3L_12717521_SNP [dm3] 3L_12724421_SNP [dm6]	T	A	3.137e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6986454	2L_6986454_SNP [dm3] 2L_6986454_SNP [dm6]	A	C	3.151e^-4	1	INTRON uif EXON CR44326
3L	10146877	3L_10146877_SNP [dm3] 3L_10153777_SNP [dm6]	T	C	3.172e^-4	1	DOWNSTREAM CG8072 INTRON dpr10
3R	14952890	3R_14952890_SNP [dm3] 3R_19127168_SNP [dm6]	A	G	3.189e^-4	1	NON_SYNONYMOUS_CODING CG6040
X	16083291	X_16083291_SNP [dm3] X_16189258_SNP [dm6]	T	G	3.190e^-4	1	INTERGENIC
3R	12614981	3R_12614981_SNP [dm3] 3R_16789259_SNP [dm6]	T	C	3.192e^-4	1	SYNONYMOUS_CODING Glut3	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	16727023	2R_16727023_SNP [dm3] 2R_20839518_SNP [dm6]	A	T	3.201e^-4	1	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	16083292	X_16083292_SNP [dm3] X_16189259_SNP [dm6]	G	A	3.202e^-4	1	INTERGENIC
X	1146199	X_1146199_SNP [dm3] X_1252166_SNP [dm6]	G	A	3.205e^-4	1	INTRON Atf3
3R	19901105	3R_19901105_SNP [dm3] 3R_24075383_SNP [dm6]	C	T	3.242e^-4	1	INTRON 4EHP
3L	3864977	3L_3864977_SNP [dm3] 3L_3864977_SNP [dm6]	G	T	3.242e^-4	1	UPSTREAM CR45379 INTERGENIC
3R	18460325	3R_18460325_SNP [dm3] 3R_22634603_SNP [dm6]	C	A	3.243e^-4	1	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13700790	2L_13700790_SNP [dm3] 2L_13700790_SNP [dm6]	G	C	3.246e^-4	1	INTRON CG31814
3L	3348952	3L_3348952_SNP [dm3] 3L_3348952_SNP [dm6]	C	T	3.251e^-4	1	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5196301	3R_5196301_SNP [dm3] 3R_9370579_SNP [dm6]	T	C	3.255e^-4	1	INTRON FER
X	10041900	X_10041900_SNP [dm3] X_10147867_SNP [dm6]	G	A	3.264e^-4	1	INTRON CR44894 & 1 other
3R	14979690	3R_14979690_SNP [dm3] 3R_19153968_SNP [dm6]	T	C	3.268e^-4	1	UPSTREAM CG5835 DOWNSTREAM CG11779 INTERGENIC
3L	12345302	3L_12345302_SNP [dm3] 3L_12352202_SNP [dm6]	C	T	3.268e^-4	1	UPSTREAM CrzR INTERGENIC
2R	14471611	2R_14471611_SNP [dm3] 2R_18584106_SNP [dm6]	C	A	3.281e^-4	1	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25090175	3R_25090175_SNP [dm3] 3R_29264453_SNP [dm6]	T	C	3.287e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13914669	3L_13914669_SNP [dm3] 3L_13921569_SNP [dm6]	A	C	3.292e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
2L	14067146	2L_14067146_SNP [dm3] 2L_14067146_SNP [dm6]	T	C	3.302e^-4	1	INTRON nAChRalpha5
3R	9621223	3R_9621223_SNP [dm3] 3R_13795501_SNP [dm6]	T	C	3.302e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8069391	X_8069391_SNP [dm3] X_8175358_SNP [dm6]	C	T	3.308e^-4	1	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_sens
3R	7879528	3R_7879528_SNP [dm3] 3R_12053806_SNP [dm6]	C	T	3.316e^-4	1	INTERGENIC
2R	7956104	2R_7956104_SNP [dm3] 2R_12068599_SNP [dm6]	C	T	3.318e^-4	1	INTRON CG8888
3L	2377239	3L_2377239_SNP [dm3] 3L_2377239_SNP [dm6]	T	A	3.321e^-4	1	UPSTREAM CG45186 DOWNSTREAM CG9004 INTRON CG15877	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8839066	2R_8839066_SNP [dm3] 2R_12951561_SNP [dm6]	C	T	3.333e^-4	1	INTRON CG44251 & 1 other
3L	10231264	3L_10231264_SNP [dm3] 3L_10238164_SNP [dm6]	C	G	3.336e^-4	1	INTERGENIC
X	15429472	X_15429472_INS [dm3] X_15535439_INS [dm6]	A	AATGCGGAAATTTGGCAAAA...	3.344e^-4	1	INTRON Ac13E
3R	4118919	3R_4118919_SNP [dm3] 3R_8293197_SNP [dm6]	C	G	3.351e^-4	1	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9194348	2L_9194348_SNP [dm3] 2L_9194348_SNP [dm6]	C	T	3.359e^-4	1	INTRON tai
3L	5263800	3L_5263800_SNP [dm3] 3L_5270700_SNP [dm6]	A	T	3.374e^-4	1	INTRON shep
2L	16841946	2L_16841946_DEL [dm3] 2L_16841946_DEL [dm6]	AA	A	3.377e^-4	1	DOWNSTREAM CG13284 & 2 others INTERGENIC
3L	9990682	3L_9990682_SNP [dm3] 3L_9997582_SNP [dm6]	A	C	3.381e^-4	1	INTRON dpr6
2L	14407696	2L_14407696_SNP [dm3] 2L_14407696_SNP [dm6]	G	A	3.390e^-4	1	INTRON elB
X	5518762	X_5518762_SNP [dm3] X_5624729_SNP [dm6]	C	T	3.391e^-4	1	SYNONYMOUS_CODING l_1_G0045 DOWNSTREAM CG42492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12691658	2L_12691658_SNP [dm3] 2L_12691658_SNP [dm6]	G	A	3.394e^-4	1	SYNONYMOUS_CODING CG5525	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	5761157	2L_5761157_SNP [dm3] 2L_5761157_SNP [dm6]	A	T	3.406e^-4	1	UTR_3_PRIME CG11030
3R	18075433	3R_18075433_SNP [dm3] 3R_22249711_SNP [dm6]	A	G	3.406e^-4	1	INTRON SKIP
X	16722360	X_16722360_DEL [dm3] X_16828327_DEL [dm6]	CCC	C	3.409e^-4	1	UPSTREAM CG13004 INTRON CG13004
3L	7903046	3L_7903046_SNP [dm3] 3L_7909946_SNP [dm6]	G	C	3.416e^-4	1	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2241555	3R_2241555_SNP [dm3] 3R_6415833_SNP [dm6]	T	C	3.425e^-4	1	INTRON gpp
2L	10852724	2L_10852724_SNP [dm3] 2L_10852724_SNP [dm6]	T	C	3.428e^-4	1	SYNONYMOUS_CODING CG43129 INTRON CG43129	TF binding site mE1_TFBS_chinmo
3L	23147337	3L_23147337_INS [dm3] 3L_23154237_INS [dm6]	T	TGT	3.431e^-4	1	INTERGENIC	transposable element FlyBase
3L	16409546	3L_16409546_SNP [dm3] 3L_16416446_SNP [dm6]	C	A	3.431e^-4	1	SYNONYMOUS_CODING CG4573 DOWNSTREAM Aats-tyr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14401385	2L_14401385_SNP [dm3] 2L_14401385_SNP [dm6]	A	G	3.447e^-4	1	INTRON elB
2L	17001082	2L_17001082_SNP [dm3] 2L_17001082_SNP [dm6]	T	C	3.452e^-4	1	INTERGENIC
2L	11303048	2L_11303048_SNP [dm3] 2L_11303048_SNP [dm6]	T	A	3.472e^-4	1	INTERGENIC
3R	22659933	3R_22659933_SNP [dm3] 3R_26834211_SNP [dm6]	T	A	3.478e^-4	1	INTRON Tl	TF binding site mE1_TFBS_HSA
3R	26478907	3R_26478907_SNP [dm3] 3R_30653185_SNP [dm6]	A	G	3.494e^-4	1	INTERGENIC
2R	1345372	2R_1345372_SNP [dm3] 2R_5457867_SNP [dm6]	T	C	3.494e^-4	1	INTERGENIC	transposable element FlyBase
3R	17265668	3R_17265668_SNP [dm3] 3R_21439946_SNP [dm6]	G	C	3.504e^-4	1	INTERGENIC
2R	8344682	2R_8344682_SNP [dm3] 2R_12457177_SNP [dm6]	A	C	3.516e^-4	1	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12940208	3R_12940208_SNP [dm3] 3R_17114486_SNP [dm6]	T	G	3.525e^-4	1	INTRON cher
X	7750457	X_7750457_INS [dm3] X_7856424_INS [dm6]	C	CAGTCGC	3.525e^-4	1	INTERGENIC
2R	14595897	2R_14595897_SNP [dm3] 2R_18708392_SNP [dm6]	C	T	3.532e^-4	1	DOWNSTREAM CG15073 INTRON CG15087
3L	23147641	3L_23147641_SNP [dm3] 3L_23154541_SNP [dm6]	C	G	3.543e^-4	1	INTERGENIC	transposable element FlyBase
2L	2483514	2L_2483514_SNP [dm3] 2L_2483514_SNP [dm6]	C	T	3.544e^-4	1	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	23183105	3R_23183105_DEL [dm3] 3R_27357383_DEL [dm6]	TT	T	3.556e^-4	1	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9723532	2R_9723532_SNP [dm3] 2R_13836027_SNP [dm6]	A	G	3.567e^-4	1	UPSTREAM CG6337 & 1 other INTERGENIC
2L	12668847	2L_12668847_SNP [dm3] 2L_12668847_SNP [dm6]	T	G	3.573e^-4	1	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14625344	X_14625344_SNP [dm3] X_14731311_SNP [dm6]	A	G	3.576e^-4	1	INTRON NetB
2L	17296254	2L_17296254_SNP [dm3] 2L_17296254_SNP [dm6]	G	C	3.577e^-4	1	INTERGENIC
2L	17901462	2L_17901462_SNP [dm3] 2L_17901462_SNP [dm6]	C	T	3.581e^-4	1	DOWNSTREAM CR45332 INTERGENIC
3L	5874729	3L_5874729_SNP [dm3] 3L_5881629_SNP [dm6]	T	C	3.587e^-4	1	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16240014	2R_16240014_SNP [dm3] 2R_20352509_SNP [dm6]	T	C	3.595e^-4	1	INTERGENIC
2L	13133406	2L_13133406_SNP [dm3] 2L_13133406_SNP [dm6]	G	A	3.612e^-4	1	NON_SYNONYMOUS_CODING CG5122
3R	13908814	3R_13908814_SNP [dm3] 3R_18083092_SNP [dm6]	T	C	3.618e^-4	1	DOWNSTREAM CG14317 INTERGENIC
2R	10231740	2R_10231740_SNP [dm3] 2R_14344235_SNP [dm6]	C	T	3.624e^-4	1	INTRON Shroom
3L	13434682	3L_13434682_SNP [dm3] 3L_13441582_SNP [dm6]	T	G	3.624e^-4	1	INTRON CG14109	TF binding site mE1_TFBS_HSA
2R	11019374	2R_11019374_SNP [dm3] 2R_15131869_SNP [dm6]	A	C	3.632e^-4	1	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23147638	3L_23147638_INS [dm3] 3L_23154538_INS [dm6]	G	GCTGC	3.632e^-4	1	INTERGENIC	transposable element FlyBase
X	15116690	X_15116690_SNP [dm3] X_15222657_SNP [dm6]	A	G	3.634e^-4	1	UTR_3_PRIME CG43076
2L	1354895	2L_1354895_SNP [dm3] 2L_1354895_SNP [dm6]	G	A	3.642e^-4	1	UTR_5_PRIME CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
X	15645582	X_15645582_SNP [dm3] X_15751549_SNP [dm6]	G	T	3.657e^-4	1	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2L	3384615	2L_3384615_SNP [dm3] 2L_3384615_SNP [dm6]	C	T	3.658e^-4	1	INTERGENIC
2R	1366440	2R_1366440_SNP [dm3] 2R_5478935_SNP [dm6]	A	C	3.659e^-4	1	INTRON CG30440	transposable element FlyBase
3R	7665500	3R_7665500_SNP [dm3] 3R_11839778_SNP [dm6]	T	C	3.663e^-4	1	INTRON CG6959
3R	13558743	3R_13558743_SNP [dm3] 3R_17733021_SNP [dm6]	C	T	3.665e^-4	1	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	16225998	3L_16225998_SNP [dm3] 3L_16232898_SNP [dm6]	C	T	3.683e^-4	1	UPSTREAM PDCD-5 & 1 other DOWNSTREAM MED10 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12771383	2R_12771383_SNP [dm3] 2R_16883878_SNP [dm6]	A	C	3.686e^-4	1	SPLICE_SITE_REGION CG6472 INTRON CG8910 & 1 other
3L	6598788	3L_6598788_SNP [dm3] 3L_6605688_SNP [dm6]	C	T	3.691e^-4	1	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	3316104	3L_3316104_SNP [dm3] 3L_3316104_SNP [dm6]	A	T	3.693e^-4	1	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12702049	2L_12702049_SNP [dm3] 2L_12702049_SNP [dm6]	T	A	3.697e^-4	1	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	16507054	3R_16507054_SNP [dm3] 3R_20681332_SNP [dm6]	A	T	3.723e^-4	1	INTERGENIC
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	3.728e^-4	1	INTRON nwk
2R	7385390	2R_7385390_SNP [dm3] 2R_11497885_SNP [dm6]	G	A	3.730e^-4	1	INTRON inv
2L	3441619	2L_3441619_SNP [dm3] 2L_3441619_SNP [dm6]	C	T	3.737e^-4	1	INTERGENIC
3L	23147330	3L_23147330_SNP [dm3] 3L_23154230_SNP [dm6]	T	G	3.744e^-4	1	INTERGENIC	transposable element FlyBase
3L	23147332	3L_23147332_INS [dm3] 3L_23154232_INS [dm6]	C	CACT	3.744e^-4	1	INTERGENIC	transposable element FlyBase
3L	23147334	3L_23147334_SNP [dm3] 3L_23154234_SNP [dm6]	G	C	3.744e^-4	1	INTERGENIC	transposable element FlyBase
2R	5453091	2R_5453091_SNP [dm3] 2R_9565586_SNP [dm6]	T	G	3.744e^-4	1	UPSTREAM CR45281 DOWNSTREAM Not1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3047308	3R_3047308_SNP [dm3] 3R_7221586_SNP [dm6]	C	G	3.750e^-4	1	INTERGENIC
2R	7552762	2R_7552762_SNP [dm3] 2R_11665257_SNP [dm6]	T	C	3.756e^-4	1	UPSTREAM Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14463163	2L_14463163_SNP [dm3] 2L_14463163_SNP [dm6]	C	T	3.757e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3R	25039384	3R_25039384_SNP [dm3] 3R_29213662_SNP [dm6]	A	T	3.768e^-4	1	UPSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16508130	2R_16508130_SNP [dm3] 2R_20620625_SNP [dm6]	C	T	3.777e^-4	1	SYNONYMOUS_CODING CG9945 DOWNSTREAM CG11180
2R	6685082	2R_6685082_SNP [dm3] 2R_10797577_SNP [dm6]	T	A	3.788e^-4	1	INTRON CG33144
3R	14707327	3R_14707327_SNP [dm3] 3R_18881605_SNP [dm6]	C	G	3.795e^-4	1	INTERGENIC
3R	16731290	3R_16731290_SNP [dm3] 3R_20905568_SNP [dm6]	C	A	3.799e^-4	1	UPSTREAM TotX INTRON CG5621
X	4862763	X_4862763_SNP [dm3] X_4968730_SNP [dm6]	A	G	3.803e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2550923	3L_2550923_SNP [dm3] 3L_2550923_SNP [dm6]	C	T	3.805e^-4	1	INTRON Spn
3L	13914628	3L_13914628_SNP [dm3] 3L_13921528_SNP [dm6]	A	G	3.809e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
3R	7635139	3R_7635139_SNP [dm3] 3R_11809417_SNP [dm6]	T	A	3.811e^-4	1	INTRON ClC-a	TF binding site mE1_TFBS_cad
3L	9618667	3L_9618667_SNP [dm3] 3L_9625567_SNP [dm6]	T	A	3.813e^-4	1	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8166540	3R_8166540_INS [dm3] 3R_12340818_INS [dm6]	G	GAATAACTGAAAAAAGGCCT...	3.814e^-4	1	UPSTREAM CG44956 INTERGENIC
2L	16059237	2L_16059237_SNP [dm3] 2L_16059237_SNP [dm6]	T	C	3.829e^-4	1	INTRON beat-Ia
3R	18569291	3R_18569291_SNP [dm3] 3R_22743569_SNP [dm6]	G	A	3.839e^-4	1	DOWNSTREAM CG6985 INTRON vret	TF binding site mE1_TFBS_cad
2R	8430840	2R_8430840_SNP [dm3] 2R_12543335_SNP [dm6]	T	C	3.839e^-4	1	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25666216	3R_25666216_SNP [dm3] 3R_29840494_SNP [dm6]	A	C	3.852e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3431321	2L_3431321_SNP [dm3] 2L_3431321_SNP [dm6]	A	C	3.857e^-4	1	INTERGENIC
3R	20846465	3R_20846465_SNP [dm3] 3R_25020743_SNP [dm6]	T	G	3.872e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10851698	2L_10851698_SNP [dm3] 2L_10851698_SNP [dm6]	G	T	3.873e^-4	1	UPSTREAM porin & 1 other INTRON CG43129	TF binding site BDTNP1_TFBS_dl
2R	16818320	2R_16818320_SNP [dm3] 2R_20930815_SNP [dm6]	A	T	3.876e^-4	1	INTRON Rx
3R	21888822	3R_21888822_SNP [dm3] 3R_26063100_SNP [dm6]	T	A	3.900e^-4	1	UPSTREAM CG14551 INTERGENIC
2R	19960093	2R_19960093_SNP [dm3] 2R_24072570_SNP [dm6]	A	G	3.903e^-4	1	INTRON CG3209
3R	19002136	3R_19002136_SNP [dm3] 3R_23176414_SNP [dm6]	G	T	3.908e^-4	1	INTRON Irk1
3L	7452678	3L_7452678_SNP [dm3] 3L_7459578_SNP [dm6]	C	A	3.929e^-4	1	DOWNSTREAM ppk26 INTERGENIC
3L	3983490	3L_3983490_SNP [dm3] 3L_3983490_SNP [dm6]	G	C	3.931e^-4	1	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1147501	X_1147501_SNP [dm3] X_1253468_SNP [dm6]	G	T	3.946e^-4	1	INTRON Atf3
2R	16034812	2R_16034812_SNP [dm3] 2R_20147307_SNP [dm6]	C	T	3.951e^-4	1	DOWNSTREAM CG11041 INTERGENIC
X	9929644	X_9929644_DEL [dm3] X_10035611_DEL [dm6]	ATTAGCAGCACAA...	A	3.953e^-4	1	INTRON Cht6	TF binding site mE1_TFBS_HSA
2R	14595874	2R_14595874_SNP [dm3] 2R_18708369_SNP [dm6]	C	T	3.958e^-4	1	DOWNSTREAM CG15073 INTRON CG15087
2R	18780078	2R_18780078_SNP [dm3] 2R_22892555_SNP [dm6]	T	C	3.962e^-4	1	INTRON MED23
3R	13908862	3R_13908862_SNP [dm3] 3R_18083140_SNP [dm6]	G	A	3.964e^-4	1	DOWNSTREAM CG14317 INTERGENIC
3R	26437680	3R_26437680_SNP [dm3] 3R_30611958_SNP [dm6]	A	T	3.965e^-4	1	UPSTREAM CR45571 INTERGENIC
2R	8443407	2R_8443407_SNP [dm3] 2R_12555902_SNP [dm6]	T	A	3.984e^-4	1	INTRON fra
2R	8345054	2R_8345054_SNP [dm3] 2R_12457549_SNP [dm6]	T	C	3.985e^-4	1	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9911793	3L_9911793_SNP [dm3] 3L_9918693_SNP [dm6]	A	C	4.000e^-4	1	INTRON CG34356
2L	1354898	2L_1354898_SNP [dm3] 2L_1354898_SNP [dm6]	T	A	4.001e^-4	1	UTR_5_PRIME CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
3L	12374395	3L_12374395_SNP [dm3] 3L_12381295_SNP [dm6]	A	C	4.005e^-4	1	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	19651191	2R_19651191_SNP [dm3] 2R_23763668_SNP [dm6]	T	A	4.013e^-4	1	INTRON CG9850
2L	7105793	2L_7105793_SNP [dm3] 2L_7105793_SNP [dm6]	C	T	4.013e^-4	1	INTRON Pvf3
3L	2612678	3L_2612678_SNP [dm3] 3L_2612678_SNP [dm6]	C	T	4.016e^-4	1	INTRON Pxn
2R	6206984	2R_6206984_SNP [dm3] 2R_10319479_SNP [dm6]	G	A	4.022e^-4	1	NON_SYNONYMOUS_CODING Ndg DOWNSTREAM CG34222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9306313	3L_9306313_SNP [dm3] 3L_9313213_SNP [dm6]	A	T	4.022e^-4	1	INTERGENIC
2L	4807824	2L_4807824_SNP [dm3] 2L_4807824_SNP [dm6]	A	T	4.023e^-4	1	INTERGENIC
2R	4520795	2R_4520795_SNP [dm3] 2R_8633290_SNP [dm6]	G	C	4.028e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9618694	3L_9618694_SNP [dm3] 3L_9625594_SNP [dm6]	A	G	4.031e^-4	1	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9910513	2R_9910513_SNP [dm3] 2R_14023008_SNP [dm6]	A	T	4.032e^-4	1	INTRON mam
2R	11837401	2R_11837401_SNP [dm3] 2R_15949896_SNP [dm6]	G	A	4.037e^-4	1	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_chinmo
3R	12640370	3R_12640370_SNP [dm3] 3R_16814648_SNP [dm6]	C	G	4.039e^-4	1	INTRON abd-A	regulatory region REDfly_CRMs
3R	7878869	3R_7878869_SNP [dm3] 3R_12053147_SNP [dm6]	A	G	4.045e^-4	1	INTERGENIC
3R	14012473	3R_14012473_SNP [dm3] 3R_18186751_SNP [dm6]	C	T	4.055e^-4	1	SYNONYMOUS_CODING Arp5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	11209795	3R_11209795_SNP [dm3] 3R_15384073_SNP [dm6]	A	G	4.059e^-4	1	INTRON Rbp
2R	5529137	2R_5529137_SNP [dm3] 2R_9641632_SNP [dm6]	A	T	4.063e^-4	1	INTRON Mmp2
3L	9428545	3L_9428545_SNP [dm3] 3L_9435445_SNP [dm6]	C	T	4.089e^-4	1	UPSTREAM MTF-1 & 1 other INTRON MTF-1
2R	15212155	2R_15212155_SNP [dm3] 2R_19324650_SNP [dm6]	C	T	4.089e^-4	1	INTRON Rgk1
2R	17098402	2R_17098402_SNP [dm3] 2R_21210897_SNP [dm6]	A	T	4.091e^-4	1	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	10239199	2R_10239199_SNP [dm3] 2R_14351694_SNP [dm6]	C	T	4.091e^-4	1	UTR_3_PRIME Shroom UPSTREAM CG8613	TF binding site mE1_TFBS_cad mE1_TFBS_kn
2R	1369649	2R_1369649_SNP [dm3] 2R_5482144_SNP [dm6]	A	C	4.108e^-4	1	INTRON CG30440	transposable element FlyBase
3L	23147346	3L_23147346_SNP [dm3] 3L_23154246_SNP [dm6]	A	G	4.109e^-4	1	INTERGENIC	transposable element FlyBase
2R	9900203	2R_9900203_SNP [dm3] 2R_14012698_SNP [dm6]	C	T	4.109e^-4	1	INTRON mam
X	7733472	X_7733472_SNP [dm3] X_7839439_SNP [dm6]	A	T	4.111e^-4	1	INTRON CG1402
3L	3562312	3L_3562312_SNP [dm3] 3L_3562312_SNP [dm6]	T	G	4.114e^-4	1	INTRON Eip63E
3R	19648342	3R_19648342_SNP [dm3] 3R_23822620_SNP [dm6]	A	G	4.120e^-4	1	INTRON CG34355
2L	20675248	2L_20675248_SNP [dm3] 2L_20675248_SNP [dm6]	T	C	4.133e^-4	1	NON_SYNONYMOUS_CODING CG31678 UPSTREAM ik2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12616946	3R_12616946_SNP [dm3] 3R_16791224_SNP [dm6]	G	A	4.138e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6684961	2R_6684961_SNP [dm3] 2R_10797456_SNP [dm6]	G	A	4.143e^-4	1	INTRON CG33144
X	22053349	X_22053349_SNP [dm3] X_22651513_SNP [dm6]	G	A	4.151e^-4	1	INTERGENIC	transposable element FlyBase
2L	9194430	2L_9194430_SNP [dm3] 2L_9194430_SNP [dm6]	C	T	4.162e^-4	1	INTRON tai
2R	16715183	2R_16715183_SNP [dm3] 2R_20827678_SNP [dm6]	A	C	4.171e^-4	1	UTR_3_PRIME sktl DOWNSTREAM sktl INTRON insc	TF binding site mE1_TFBS_cad
3R	20659581	3R_20659581_SNP [dm3] 3R_24833859_SNP [dm6]	A	G	4.175e^-4	1	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21947219	3R_21947219_SNP [dm3] 3R_26121497_SNP [dm6]	C	G	4.177e^-4	1	INTRON CG31324
3R	2531384	3R_2531384_SNP [dm3] 3R_6705662_SNP [dm6]	T	G	4.184e^-4	1	DOWNSTREAM Ccp84Aa INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16192419	2R_16192419_SNP [dm3] 2R_20304914_SNP [dm6]	C	G	4.191e^-4	1	SYNONYMOUS_CODING CG11200
3L	2375867	3L_2375867_SNP [dm3] 3L_2375867_SNP [dm6]	G	T	4.193e^-4	1	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3R	14952995	3R_14952995_SNP [dm3] 3R_19127273_SNP [dm6]	T	A	4.195e^-4	1	INTRON CG6040
2R	10259634	2R_10259634_SNP [dm3] 2R_14372129_SNP [dm6]	T	G	4.197e^-4	1	UTR_5_PRIME Obp50c UTR_3_PRIME Obp50b UPSTREAM Obp50d	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10146938	3L_10146938_SNP [dm3] 3L_10153838_SNP [dm6]	G	A	4.197e^-4	1	DOWNSTREAM CG8072 INTRON dpr10
2R	19607937	2R_19607937_SNP [dm3] 2R_23720414_SNP [dm6]	T	A	4.200e^-4	1	UPSTREAM CG18128 INTRON Sesn EXON CR45325
X	3481248	X_3481248_SNP [dm3] X_3587215_SNP [dm6]	A	C	4.212e^-4	1	INTRON AstA-R1
2L	16415042	2L_16415042_SNP [dm3] 2L_16415042_SNP [dm6]	C	T	4.212e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3749968	3R_3749968_SNP [dm3] 3R_7924246_SNP [dm6]	G	T	4.217e^-4	1	UTR_3_PRIME lds DOWNSTREAM dsx
3L	13914698	3L_13914698_SNP [dm3] 3L_13921598_SNP [dm6]	T	C	4.218e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14988895	2R_14988895_SNP [dm3] 2R_19101390_SNP [dm6]	G	T	4.222e^-4	1	INTRON 5-HT1A
3L	12318058	3L_12318058_SNP [dm3] 3L_12324958_SNP [dm6]	G	T	4.223e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9911902	3L_9911902_SNP [dm3] 3L_9918802_SNP [dm6]	C	T	4.230e^-4	1	INTRON CG34356
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	4.239e^-4	1	DOWNSTREAM CG3982 INTRON CG3967
3R	19648284	3R_19648284_SNP [dm3] 3R_23822562_SNP [dm6]	G	T	4.246e^-4	1	INTRON CG34355
3L	9557518	3L_9557518_SNP [dm3] 3L_9564418_SNP [dm6]	A	T	4.258e^-4	1	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18737340	2R_18737340_SNP [dm3] 2R_22849817_SNP [dm6]	C	A	4.264e^-4	1	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
2R	16362521	2R_16362521_SNP [dm3] 2R_20475016_SNP [dm6]	A	T	4.265e^-4	1	INTRON CG12484
2L	8945604	2L_8945604_SNP [dm3] 2L_8945604_SNP [dm6]	G	C	4.266e^-4	1	INTRON C1GalTA
2R	15989257	2R_15989257_SNP [dm3] 2R_20101752_SNP [dm6]	T	A	4.273e^-4	1	INTERGENIC
2R	14595750	2R_14595750_SNP [dm3] 2R_18708245_SNP [dm6]	T	A	4.279e^-4	1	UTR_3_PRIME CG15087 DOWNSTREAM CG15073
2R	5453085	2R_5453085_SNP [dm3] 2R_9565580_SNP [dm6]	T	A	4.279e^-4	1	UPSTREAM CR45281 DOWNSTREAM Not1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2659934	3L_2659934_SNP [dm3] 3L_2659934_SNP [dm6]	G	A	4.293e^-4	1	SYNONYMOUS_CODING CG33233 INTRON Fife
3R	14212650	3R_14212650_SNP [dm3] 3R_18386928_SNP [dm6]	G	T	4.311e^-4	1	UTR_3_PRIME Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3L	559124	3L_559124_SNP [dm3] 3L_559124_SNP [dm6]	T	A	4.335e^-4	1	INTRON hipk
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	4.336e^-4	1	UPSTREAM CG5810 INTRON SNF4Agamma
2R	16818331	2R_16818331_DEL [dm3] 2R_20930826_DEL [dm6]	AATGG	A	4.339e^-4	1	INTRON Rx
2R	9680382	2R_9680382_SNP [dm3] 2R_13792877_SNP [dm6]	G	A	4.352e^-4	1	DOWNSTREAM CR43811 INTERGENIC
2R	4436839	2R_4436839_SNP [dm3] 2R_8549334_SNP [dm6]	A	G	4.362e^-4	1	INTERGENIC
3R	25221550	3R_25221550_SNP [dm3] 3R_29395828_SNP [dm6]	C	T	4.366e^-4	1	INTRON Ptp99A
3L	1260266	3L_1260266_SNP [dm3] 3L_1260266_SNP [dm6]	T	A	4.382e^-4	1	INTRON CG9134
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	4.383e^-4	1	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
2R	14573885	2R_14573885_SNP [dm3] 2R_18686380_SNP [dm6]	C	G	4.393e^-4	1	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG42855	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19627302	X_19627302_SNP [dm3] X_19733269_SNP [dm6]	C	G	4.395e^-4	1	NON_SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11438944	3L_11438944_SNP [dm3] 3L_11445844_SNP [dm6]	G	A	4.403e^-4	1	SYNONYMOUS_CODING CG7557 UPSTREAM CR44549	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11618402	2R_11618402_SNP [dm3] 2R_15730897_SNP [dm6]	T	C	4.405e^-4	1	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10827875	3L_10827875_INS [dm3] 3L_10834775_INS [dm6]	G	AT	4.408e^-4	1	INTERGENIC
3L	8763651	3L_8763651_SNP [dm3] 3L_8770551_SNP [dm6]	A	T	4.408e^-4	1	INTRON Fhos
3L	14061266	3L_14061266_SNP [dm3] 3L_14068166_SNP [dm6]	G	A	4.411e^-4	1	INTRON CG32138
2R	12342391	2R_12342391_SNP [dm3] 2R_16454886_SNP [dm6]	G	A	4.422e^-4	1	INTERGENIC
3R	11020044	3R_11020044_SNP [dm3] 3R_15194322_SNP [dm6]	C	T	4.422e^-4	1	SYNONYMOUS_CODING CG6752	TF binding site mE1_TFBS_sens
3L	9911808	3L_9911808_SNP [dm3] 3L_9918708_SNP [dm6]	G	C	4.428e^-4	1	INTRON CG34356
X	9988154	X_9988154_SNP [dm3] X_10094121_SNP [dm6]	C	A	4.432e^-4	1	INTRON RhoU
3L	9619636	3L_9619636_SNP [dm3] 3L_9626536_SNP [dm6]	C	A	4.438e^-4	1	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
3L	3098955	3L_3098955_SNP [dm3] 3L_3098955_SNP [dm6]	G	A	4.448e^-4	1	INTRON Cht7
X	19568959	X_19568959_SNP [dm3] X_19674926_SNP [dm6]	T	C	4.457e^-4	1	NON_SYNONYMOUS_CODING et	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2313160	3L_2313160_SNP [dm3] 3L_2313160_SNP [dm6]	G	T	4.460e^-4	1	INTERGENIC
3L	5898792	3L_5898792_INS [dm3] 3L_5905692_INS [dm6]	A	AA	4.462e^-4	1	FRAME_SHIFT CG10486 INTRON CG10486
3L	2352876	3L_2352876_SNP [dm3] 3L_2352876_SNP [dm6]	C	A	4.472e^-4	1	INTERGENIC
X	4132391	X_4132391_SNP [dm3] X_4238358_SNP [dm6]	G	C	4.480e^-4	1	INTERGENIC
3L	9018971	3L_9018971_SNP [dm3] 3L_9025871_SNP [dm6]	A	T	4.496e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11219580	3L_11219580_SNP [dm3] 3L_11226480_SNP [dm6]	T	C	4.500e^-4	1	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
2L	13411176	2L_13411176_SNP [dm3] 2L_13411176_SNP [dm6]	C	A	4.500e^-4	1	UTR_3_PRIME Vm34Ca DOWNSTREAM CG7110
2L	13501729	2L_13501729_SNP [dm3] 2L_13501729_SNP [dm6]	C	T	4.516e^-4	1	UTR_3_PRIME B4 DOWNSTREAM B4
3R	14283044	3R_14283044_SNP [dm3] 3R_18457322_SNP [dm6]	G	A	4.520e^-4	1	INTRON fru
2R	14595911	2R_14595911_SNP [dm3] 2R_18708406_SNP [dm6]	T	A	4.527e^-4	1	DOWNSTREAM CG15073 INTRON CG15087
3R	20336238	3R_20336238_SNP [dm3] 3R_24510516_SNP [dm6]	A	G	4.534e^-4	1	INTRON nAChRbeta2
3L	23147358	3L_23147358_INS [dm3] 3L_23154258_INS [dm6]	T	TTTTG	4.538e^-4	1	INTERGENIC	transposable element FlyBase
X	16083342	X_16083342_SNP [dm3] X_16189309_SNP [dm6]	G	A	4.542e^-4	1	INTERGENIC
3R	25535452	3R_25535452_DEL [dm3] 3R_29709730_DEL [dm6]	AAA	A	4.543e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16998614	3R_16998614_SNP [dm3] 3R_21172892_SNP [dm6]	T	C	4.553e^-4	1	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9929369	2R_9929369_SNP [dm3] 2R_14041864_SNP [dm6]	G	T	4.554e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13333699	3L_13333699_SNP [dm3] 3L_13340599_SNP [dm6]	T	A	4.562e^-4	1	INTERGENIC
3L	17272507	3L_17272507_SNP [dm3] 3L_17279407_SNP [dm6]	C	T	4.572e^-4	1	INTERGENIC
3L	18828962	3L_18828962_SNP [dm3] 3L_18835862_SNP [dm6]	C	A	4.578e^-4	1	INTRON Indy
3R	23011239	3R_23011239_SNP [dm3] 3R_27185517_SNP [dm6]	C	G	4.594e^-4	1	INTRON Ser	TF binding site mE1_TFBS_HSA
X	1617925	X_1617925_SNP [dm3] X_1723892_SNP [dm6]	T	G	4.598e^-4	1	INTERGENIC
3R	19145491	3R_19145491_SNP [dm3] 3R_23319769_SNP [dm6]	T	C	4.606e^-4	1	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	12082411	2L_12082411_SNP [dm3] 2L_12082411_SNP [dm6]	A	T	4.614e^-4	1	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2379073	3L_2379073_SNP [dm3] 3L_2379073_SNP [dm6]	T	C	4.615e^-4	1	UTR_5_PRIME CG45186 INTRON CG45186
2R	15116174	2R_15116174_SNP [dm3] 2R_19228669_SNP [dm6]	C	A	4.618e^-4	1	UPSTREAM cora DOWNSTREAM CG7137 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8838418	2R_8838418_SNP [dm3] 2R_12950913_SNP [dm6]	G	A	4.620e^-4	1	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16433129	2L_16433129_SNP [dm3] 2L_16433129_SNP [dm6]	G	A	4.622e^-4	1	INTRON CG5888
3R	2509533	3R_2509533_SNP [dm3] 3R_6683811_SNP [dm6]	C	A	4.626e^-4	1	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12381236	3L_12381236_SNP [dm3] 3L_12388136_SNP [dm6]	T	A	4.630e^-4	1	UPSTREAM Ncc69 INTRON Ncc69
3R	2491433	3R_2491433_SNP [dm3] 3R_6665711_SNP [dm6]	T	A	4.631e^-4	1	INTRON lab
2R	6718570	2R_6718570_SNP [dm3] 2R_10831065_SNP [dm6]	G	T	4.637e^-4	1	INTRON CG12344	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7552420	2R_7552420_SNP [dm3] 2R_11664915_SNP [dm6]	G	A	4.651e^-4	1	UPSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_Trl
3R	7878898	3R_7878898_SNP [dm3] 3R_12053176_SNP [dm6]	A	G	4.668e^-4	1	INTERGENIC
3R	9189946	3R_9189946_SNP [dm3] 3R_13364224_SNP [dm6]	A	T	4.687e^-4	1	UPSTREAM Dic1 INTRON poly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6151363	X_6151363_SNP [dm3] X_6257330_SNP [dm6]	C	T	4.693e^-4	1	UTR_3_PRIME Spx DOWNSTREAM schlank
3R	18569027	3R_18569027_SNP [dm3] 3R_22743305_SNP [dm6]	T	A	4.700e^-4	1	SPLICE_SITE_REGION vret SYNONYMOUS_CODING vret DOWNSTREAM CG6985
3R	8522391	3R_8522391_SNP [dm3] 3R_12696669_SNP [dm6]	G	T	4.710e^-4	1	UPSTREAM Past1 INTRON NijC	TF binding site mE1_TFBS_sens
3R	7560790	3R_7560790_SNP [dm3] 3R_11735068_SNP [dm6]	C	T	4.717e^-4	1	UPSTREAM CG14721 INTERGENIC
3L	9018278	3L_9018278_SNP [dm3] 3L_9025178_SNP [dm6]	A	C	4.719e^-4	1	INTERGENIC
3R	25664352	3R_25664352_SNP [dm3] 3R_29838630_SNP [dm6]	T	C	4.738e^-4	1	INTERGENIC
3R	23748049	3R_23748049_SNP [dm3] 3R_27922327_SNP [dm6]	T	A	4.750e^-4	1	UTR_5_PRIME BCAS2 UPSTREAM RpL4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	13331932	2L_13331932_SNP [dm3] 2L_13331932_SNP [dm6]	A	T	4.759e^-4	1	UPSTREAM CG43778 INTERGENIC
3L	3592085	3L_3592085_INS [dm3] 3L_3592085_INS [dm6]	G	GTCTCTGGCAAAAGTTG...	4.771e^-4	1	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12344856	2L_12344856_SNP [dm3] 2L_12344856_SNP [dm6]	A	T	4.775e^-4	1	UPSTREAM CG43813 INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3L	13471635	3L_13471635_SNP [dm3] 3L_13478535_SNP [dm6]	A	C	4.777e^-4	1	INTRON stv	TF binding site mE1_TFBS_chinmo
3L	5549429	3L_5549429_SNP [dm3] 3L_5556329_SNP [dm6]	G	T	4.782e^-4	1	INTERGENIC
2L	13259567	2L_13259567_SNP [dm3] 2L_13259567_SNP [dm6]	G	T	4.784e^-4	1	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
3R	7555259	3R_7555259_SNP [dm3] 3R_11729537_SNP [dm6]	G	A	4.794e^-4	1	NON_SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad
3L	12809684	3L_12809684_SNP [dm3] 3L_12816584_SNP [dm6]	C	G	4.797e^-4	1	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
X	6402343	X_6402343_SNP [dm3] X_6508310_SNP [dm6]	G	A	4.804e^-4	1	INTRON CG42340
2L	9654985	2L_9654985_SNP [dm3] 2L_9654985_SNP [dm6]	G	C	4.817e^-4	1	SYNONYMOUS_CODING Apoltp
2L	9491152	2L_9491152_SNP [dm3] 2L_9491152_SNP [dm6]	T	A	4.824e^-4	1	DOWNSTREAM Gdi INTERGENIC
3R	25664384	3R_25664384_SNP [dm3] 3R_29838662_SNP [dm6]	G	A	4.824e^-4	1	INTERGENIC
3L	9618671	3L_9618671_SNP [dm3] 3L_9625571_SNP [dm6]	T	C	4.829e^-4	1	SYNONYMOUS_CODING CG3335	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5697322	3R_5697322_SNP [dm3] 3R_9871600_SNP [dm6]	A	G	4.831e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8741087	2L_8741087_SNP [dm3] 2L_8741087_SNP [dm6]	C	A	4.835e^-4	1	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	14804668	3R_14804668_SNP [dm3] 3R_18978946_SNP [dm6]	G	A	4.847e^-4	1	UPSTREAM CG12269 DOWNSTREAM Smu1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2L	3318409	2L_3318409_SNP [dm3] 2L_3318409_SNP [dm6]	T	A	4.847e^-4	1	DOWNSTREAM CG3277 INTRON CG3326
3R	10713369	3R_10713369_SNP [dm3] 3R_14887647_SNP [dm6]	T	A	4.849e^-4	1	UTR_3_PRIME CG33331 INTRON CG33332	TF binding site mE1_TFBS_inv
3L	23147650	3L_23147650_SNP [dm3] 3L_23154550_SNP [dm6]	C	A	4.856e^-4	1	INTERGENIC	transposable element FlyBase
2L	12996859	2L_12996859_SNP [dm3] 2L_12996859_SNP [dm6]	A	G	4.859e^-4	1	INTRON CG12404
3R	19648335	3R_19648335_SNP [dm3] 3R_23822613_SNP [dm6]	G	A	4.860e^-4	1	INTRON CG34355
3L	13914496	3L_13914496_SNP [dm3] 3L_13921396_SNP [dm6]	C	A	4.867e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
X	17220294	X_17220294_SNP [dm3] X_17326261_SNP [dm6]	T	C	4.878e^-4	1	INTERGENIC
2R	15779211	2R_15779211_SNP [dm3] 2R_19891706_SNP [dm6]	G	A	4.899e^-4	1	INTERGENIC
X	10755639	X_10755639_SNP [dm3] X_10861606_SNP [dm6]	T	G	4.906e^-4	1	INTRON CG2186
3L	12436577	3L_12436577_SNP [dm3] 3L_12443477_SNP [dm6]	C	A	4.906e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20938559	3R_20938559_SNP [dm3] 3R_25112837_SNP [dm6]	A	T	4.907e^-4	1	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
3R	3011923	3R_3011923_SNP [dm3] 3R_7186201_SNP [dm6]	G	A	4.914e^-4	1	SYNONYMOUS_CODING CG10055 UPSTREAM lap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3092803	X_3092803_SNP [dm3] X_3198770_SNP [dm6]	C	A	4.929e^-4	1	INTRON dnc
2L	17507513	2L_17507513_SNP [dm3] 2L_17507513_SNP [dm6]	C	A	4.930e^-4	1	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14979940	3R_14979940_SNP [dm3] 3R_19154218_SNP [dm6]	C	T	4.935e^-4	1	UTR_3_PRIME CG11779 UPSTREAM CG5835 DOWNSTREAM CG11779
3R	16486121	3R_16486121_SNP [dm3] 3R_20660399_SNP [dm6]	G	T	4.939e^-4	1	UPSTREAM Nep4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	10138001	3R_10138001_SNP [dm3] 3R_14312279_SNP [dm6]	G	A	4.944e^-4	1	SYNONYMOUS_CODING CG31321
2L	13697581	2L_13697581_SNP [dm3] 2L_13697581_SNP [dm6]	G	A	4.952e^-4	1	INTRON CG31814
2R	10114986	2R_10114986_SNP [dm3] 2R_14227481_SNP [dm6]	A	T	4.959e^-4	1	NON_SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8575841	3R_8575841_SNP [dm3] 3R_12750119_SNP [dm6]	T	G	4.961e^-4	1	INTRON beat-Vc
2R	8345589	2R_8345589_SNP [dm3] 2R_12458084_SNP [dm6]	C	T	4.963e^-4	1	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20938558	3R_20938558_SNP [dm3] 3R_25112836_SNP [dm6]	A	T	4.966e^-4	1	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
2L	6772960	2L_6772960_INS [dm3] 2L_6772960_INS [dm6]	T	TT	4.967e^-4	1	UPSTREAM CG11321 INTERGENIC
3L	10771075	3L_10771075_SNP [dm3] 3L_10777975_SNP [dm6]	G	A	4.967e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	3435303	2L_3435303_DEL [dm3] 2L_3435303_DEL [dm6]	CC	A	4.970e^-4	1	INTERGENIC
3L	9805366	3L_9805366_SNP [dm3] 3L_9812266_SNP [dm6]	G	A	4.971e^-4	1	INTERGENIC
2R	4293700	2R_4293700_SNP [dm3] 2R_8406195_SNP [dm6]	T	A	4.972e^-4	1	INTRON CG2121
2R	14271850	2R_14271850_SNP [dm3] 2R_18384345_SNP [dm6]	C	T	4.973e^-4	1	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
X	15543686	X_15543686_SNP [dm3] X_15649653_SNP [dm6]	A	T	4.978e^-4	1	INTERGENIC
2R	10239105	2R_10239105_SNP [dm3] 2R_14351600_SNP [dm6]	T	C	4.979e^-4	1	UTR_3_PRIME Shroom UPSTREAM CG8613	TF binding site mE1_TFBS_cad mE1_TFBS_kn
3L	13258078	3L_13258078_SNP [dm3] 3L_13264978_SNP [dm6]	T	A	4.989e^-4	1	INTRON caps
3R	6991037	3R_6991037_SNP [dm3] 3R_11165315_SNP [dm6]	G	T	4.997e^-4	1	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
3L	2737313	3L_2737313_SNP [dm3] 3L_2737313_SNP [dm6]	G	T	4.998e^-4	1	INTRON Mrtf
3R	16507059	3R_16507059_SNP [dm3] 3R_20681337_SNP [dm6]	G	C	4.998e^-4	1	INTERGENIC
2L	16436087	2L_16436087_SNP [dm3] 2L_16436087_SNP [dm6]	A	G	5.002e^-4	1	INTRON CG5888
2L	8744361	2L_8744361_DEL [dm3] 2L_8744361_DEL [dm6]	AA	A	5.006e^-4	1	INTERGENIC
2R	12290303	2R_12290303_SNP [dm3] 2R_16402798_SNP [dm6]	A	C	5.018e^-4	1	INTRON Sema-2b
3L	8735535	3L_8735535_SNP [dm3] 3L_8742435_SNP [dm6]	A	T	5.021e^-4	1	INTRON Prm	TF binding site BDTNP1_TFBS_twi
3L	1260218	3L_1260218_SNP [dm3] 3L_1260218_SNP [dm6]	C	T	5.031e^-4	1	INTRON CG9134
3R	9621450	3R_9621450_SNP [dm3] 3R_13795728_SNP [dm6]	T	G	5.037e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17575746	3L_17575746_SNP [dm3] 3L_17582646_SNP [dm6]	C	A	5.045e^-4	1	INTRON Eip74EF
2L	14366912	2L_14366912_SNP [dm3] 2L_14366912_SNP [dm6]	A	T	5.049e^-4	1	DOWNSTREAM spel1 INTERGENIC
3R	14979648	3R_14979648_SNP [dm3] 3R_19153926_SNP [dm6]	G	A	5.051e^-4	1	UPSTREAM CG5835 DOWNSTREAM CG11779 INTERGENIC
X	6017676	X_6017676_SNP [dm3] X_6123643_SNP [dm6]	T	G	5.091e^-4	1	INTRON Ca-alpha1T	TF binding site mE1_TFBS_HSA
2R	16847961	2R_16847961_SNP [dm3] 2R_20960456_SNP [dm6]	G	A	5.096e^-4	1	SYNONYMOUS_CODING hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3767631	3R_3767631_SNP [dm3] 3R_7941909_SNP [dm6]	G	T	5.100e^-4	1	INTRON dsx
2L	1418321	2L_1418321_SNP [dm3] 2L_1418321_SNP [dm6]	T	A	5.104e^-4	1	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2626478	3L_2626478_SNP [dm3] 3L_2626478_SNP [dm6]	T	A	5.109e^-4	1	INTRON Pxn
2R	6723623	2R_6723623_SNP [dm3] 2R_10836118_SNP [dm6]	T	G	5.111e^-4	1	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC
3R	27430242	3R_27430242_SNP [dm3] 3R_31604520_SNP [dm6]	G	A	5.112e^-4	1	INTRON CycG	TF binding site mE1_TFBS_sens
2L	9490997	2L_9490997_SNP [dm3] 2L_9490997_SNP [dm6]	T	G	5.115e^-4	1	DOWNSTREAM Gdi INTERGENIC
2R	10180827	2R_10180827_SNP [dm3] 2R_14293322_SNP [dm6]	T	A	5.121e^-4	1	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
X	19479373	X_19479373_DEL [dm3] X_19585340_DEL [dm6]	GC	G	5.123e^-4	1	INTRON CG14204
2R	18308134	2R_18308134_SNP [dm3] 2R_22420629_SNP [dm6]	T	G	5.123e^-4	1	UPSTREAM rad50 & 1 other INTERGENIC
2R	14667014	2R_14667014_SNP [dm3] 2R_18779509_SNP [dm6]	A	G	5.128e^-4	1	INTERGENIC
3L	2803087	3L_2803087_SNP [dm3] 3L_2803087_SNP [dm6]	A	G	5.136e^-4	1	INTRON CG43444
3L	2737287	3L_2737287_SNP [dm3] 3L_2737287_SNP [dm6]	A	C	5.151e^-4	1	INTRON Mrtf
2L	10580937	2L_10580937_SNP [dm3] 2L_10580937_SNP [dm6]	C	A	5.156e^-4	1	DOWNSTREAM CG34161 & 1 other INTRON Trim9
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	5.171e^-4	1	INTRON nwk
2L	13327611	2L_13327611_SNP [dm3] 2L_13327611_SNP [dm6]	A	G	5.174e^-4	1	INTRON CG43778
2R	16715569	2R_16715569_SNP [dm3] 2R_20828064_SNP [dm6]	C	T	5.180e^-4	1	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad
3R	3855909	3R_3855909_SNP [dm3] 3R_8030187_SNP [dm6]	C	A	5.190e^-4	1	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20387660	2R_20387660_SNP [dm3] 2R_24500137_SNP [dm6]	G	A	5.193e^-4	1	DOWNSTREAM Prosalpha4T2 INTRON Ssl
3R	26653896	3R_26653896_SNP [dm3] 3R_30828174_SNP [dm6]	T	A	5.213e^-4	1	UTR_5_PRIME CG15544
3R	25666205	3R_25666205_SNP [dm3] 3R_29840483_SNP [dm6]	G	A	5.230e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16415036	2L_16415036_SNP [dm3] 2L_16415036_SNP [dm6]	G	A	5.231e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13851355	2L_13851355_SNP [dm3] 2L_13851355_SNP [dm6]	A	G	5.234e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2801614	3L_2801614_SNP [dm3] 3L_2801614_SNP [dm6]	G	A	5.238e^-4	1	INTRON CG43444
2L	12693944	2L_12693944_SNP [dm3] 2L_12693944_SNP [dm6]	T	C	5.256e^-4	1	UTR_3_PRIME CG5780 DOWNSTREAM CG6153
2L	3240429	2L_3240429_SNP [dm3] 2L_3240429_SNP [dm6]	T	C	5.257e^-4	1	INTERGENIC
3L	1271427	3L_1271427_SNP [dm3] 3L_1271427_SNP [dm6]	A	C	5.257e^-4	1	INTRON CG9134
2L	6582908	2L_6582908_SNP [dm3] 2L_6582908_SNP [dm6]	G	T	5.270e^-4	1	INTRON CG11319
3R	25119173	3R_25119173_SNP [dm3] 3R_29293451_SNP [dm6]	G	T	5.279e^-4	1	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26529497	3R_26529497_SNP [dm3] 3R_30703775_SNP [dm6]	T	C	5.282e^-4	1	DOWNSTREAM CG31010 INTERGENIC
X	16308663	X_16308663_SNP [dm3] X_16414630_SNP [dm6]	A	T	5.283e^-4	1	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
3R	18183640	3R_18183640_SNP [dm3] 3R_22357918_SNP [dm6]	A	T	5.292e^-4	1	INTRON Sar1	TF binding site mE1_TFBS_sens
X	12218851	X_12218851_SNP [dm3] X_12324818_SNP [dm6]	A	T	5.299e^-4	1	INTRON Ten-a
2L	3176106	2L_3176106_SNP [dm3] 2L_3176106_SNP [dm6]	A	G	5.303e^-4	1	INTRON CG34393
3L	8799493	3L_8799493_SNP [dm3] 3L_8806393_SNP [dm6]	C	G	5.303e^-4	1	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	10155961	3L_10155961_SNP [dm3] 3L_10162861_SNP [dm6]	G	T	5.306e^-4	1	INTRON dpr10
2R	11467368	2R_11467368_INS [dm3] 2R_15579863_INS [dm6]	T	TTAAGATG	5.310e^-4	1	INTERGENIC
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	5.312e^-4	1	INTRON CG7781
2L	14401372	2L_14401372_SNP [dm3] 2L_14401372_SNP [dm6]	C	A	5.318e^-4	1	INTRON elB
3L	1233020	3L_1233020_SNP [dm3] 3L_1233020_SNP [dm6]	A	G	5.319e^-4	1	SYNONYMOUS_CODING CG33965 DOWNSTREAM mwh
3L	3042568	3L_3042568_SNP [dm3] 3L_3042568_SNP [dm6]	T	C	5.337e^-4	1	START_GAINED Jafrac2 UTR_5_PRIME Jafrac2 UPSTREAM Jafrac2 INTRON Jafrac2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14595892	2R_14595892_SNP [dm3] 2R_18708387_SNP [dm6]	T	C	5.351e^-4	1	DOWNSTREAM CG15073 INTRON CG15087
3R	4295762	3R_4295762_SNP [dm3] 3R_8470040_SNP [dm6]	G	T	5.355e^-4	1	INTRON CG45263	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20364205	2R_20364205_SNP [dm3] 2R_24476682_SNP [dm6]	C	T	5.379e^-4	1	DOWNSTREAM CG16837 INTRON CG13579
X	6017807	X_6017807_SNP [dm3] X_6123774_SNP [dm6]	T	C	5.379e^-4	1	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18307753	3L_18307753_SNP [dm3] 3L_18314653_SNP [dm6]	G	A	5.382e^-4	1	INTERGENIC
2R	14667152	2R_14667152_SNP [dm3] 2R_18779647_SNP [dm6]	C	G	5.386e^-4	1	INTERGENIC
3L	12378124	3L_12378124_SNP [dm3] 3L_12385024_SNP [dm6]	A	G	5.387e^-4	1	INTRON Ncc69
3R	9909301	3R_9909301_INS [dm3] 3R_14083579_INS [dm6]	A	AGAAA	5.391e^-4	1	INTRON foxo
2R	1670338	2R_1670338_SNP [dm3] 2R_5782833_SNP [dm6]	C	A	5.403e^-4	1	UTR_5_PRIME ZnT41F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26653910	3R_26653910_SNP [dm3] 3R_30828188_SNP [dm6]	A	G	5.408e^-4	1	UTR_5_PRIME CG15544
3R	18628065	3R_18628065_SNP [dm3] 3R_22802343_SNP [dm6]	T	G	5.416e^-4	1	INTERGENIC
2L	11300423	2L_11300423_SNP [dm3] 2L_11300423_SNP [dm6]	A	T	5.418e^-4	1	INTERGENIC	transposable element FlyBase
2R	13813985	2R_13813985_SNP [dm3] 2R_17926480_SNP [dm6]	C	T	5.418e^-4	1	UTR_3_PRIME Elk
2R	9551005	2R_9551005_SNP [dm3] 2R_13663500_SNP [dm6]	A	T	5.424e^-4	1	UTR_5_PRIME CG6209 INTRON fas
2L	9194448	2L_9194448_SNP [dm3] 2L_9194448_SNP [dm6]	C	T	5.425e^-4	1	INTRON tai
3L	1564572	3L_1564572_SNP [dm3] 3L_1564572_SNP [dm6]	T	A	5.440e^-4	1	UPSTREAM CG12003 INTRON CG7879
3R	25179147	3R_25179147_SNP [dm3] 3R_29353425_SNP [dm6]	A	G	5.443e^-4	1	INTERGENIC
3L	15777544	3L_15777544_SNP [dm3] 3L_15784444_SNP [dm6]	T	C	5.444e^-4	1	INTERGENIC
2L	3495916	2L_3495916_DEL [dm3] 2L_3495916_DEL [dm6]	AAATGAATTGCTGGACTGT...	A	5.446e^-4	1	INTRON tim
3L	19643131	3L_19643131_SNP [dm3] 3L_19650031_SNP [dm6]	C	A	5.472e^-4	1	UPSTREAM Oat DOWNSTREAM tey INTERGENIC
2R	12275240	2R_12275240_SNP [dm3] 2R_16387735_SNP [dm6]	C	A	5.481e^-4	1	INTRON Sema-2b
X	19627537	X_19627537_SNP [dm3] X_19733504_SNP [dm6]	T	C	5.482e^-4	1	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17161020	3R_17161020_SNP [dm3] 3R_21335298_SNP [dm6]	G	C	5.484e^-4	1	INTRON CG16791	TF binding site mE1_TFBS_inv
3L	14457924	3L_14457924_INS [dm3] 3L_14464824_INS [dm6]	A	ATGTA	5.485e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16848872	X_16848872_SNP [dm3] X_16954839_SNP [dm6]	T	C	5.498e^-4	1	SYNONYMOUS_CODING RhoGAP15B
2R	10423571	2R_10423571_SNP [dm3] 2R_14536066_SNP [dm6]	T	A	5.501e^-4	1	INTRON ttv
3R	21947526	3R_21947526_SNP [dm3] 3R_26121804_SNP [dm6]	A	G	5.501e^-4	1	INTRON CG31324
2R	10256012	2R_10256012_SNP [dm3] 2R_14368507_SNP [dm6]	C	G	5.512e^-4	1	NON_SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	5.537e^-4	1	UPSTREAM CG5810 INTRON SNF4Agamma
X	13472369	X_13472369_SNP [dm3] X_13578336_SNP [dm6]	C	T	5.540e^-4	1	INTRON Tango13
2L	14067548	2L_14067548_SNP [dm3] 2L_14067548_SNP [dm6]	T	G	5.541e^-4	1	INTRON nAChRalpha5
3R	9621269	3R_9621269_SNP [dm3] 3R_13795547_SNP [dm6]	T	A	5.552e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17335720	3R_17335720_SNP [dm3] 3R_21509998_SNP [dm6]	T	G	5.555e^-4	1	INTRON C15	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2735038	3L_2735038_DEL [dm3] 3L_2735038_DEL [dm6]	GATTTTTAGCCGCCTG...	G	5.561e^-4	1	UPSTREAM Mrtf INTRON Mrtf
2R	10232215	2R_10232215_SNP [dm3] 2R_14344710_SNP [dm6]	T	C	5.568e^-4	1	INTRON Shroom
3R	12730142	3R_12730142_SNP [dm3] 3R_16904420_SNP [dm6]	G	A	5.573e^-4	1	INTRON iab-8
3R	26478877	3R_26478877_SNP [dm3] 3R_30653155_SNP [dm6]	C	T	5.577e^-4	1	INTERGENIC
3L	2376652	3L_2376652_SNP [dm3] 3L_2376652_SNP [dm6]	C	T	5.581e^-4	1	SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
X	16722420	X_16722420_SNP [dm3] X_16828387_SNP [dm6]	C	T	5.586e^-4	1	UPSTREAM CG13004 INTRON CG13004
2L	7165913	2L_7165913_SNP [dm3] 2L_7165913_SNP [dm6]	G	A	5.587e^-4	1	INTERGENIC
2R	16498223	2R_16498223_SNP [dm3] 2R_20610718_SNP [dm6]	T	G	5.593e^-4	1	INTRON Hil
3R	9621216	3R_9621216_SNP [dm3] 3R_13795494_SNP [dm6]	A	T	5.609e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25212884	3R_25212884_SNP [dm3] 3R_29387162_SNP [dm6]	G	A	5.612e^-4	1	INTRON Ptp99A
X	15673263	X_15673263_INS [dm3] X_15779230_INS [dm6]	G	GAAAGAAGATCATTGGATTA...	5.614e^-4	1	DOWNSTREAM CG43672 INTRON CG43673
3R	14544177	3R_14544177_SNP [dm3] 3R_18718455_SNP [dm6]	A	C	5.617e^-4	1	UTR_3_PRIME VAChT INTRON Cha
3R	22444580	3R_22444580_SNP [dm3] 3R_26618858_SNP [dm6]	A	T	5.618e^-4	1	UPSTREAM TwdlM INTERGENIC
2R	15873478	2R_15873478_SNP [dm3] 2R_19985973_SNP [dm6]	T	C	5.623e^-4	1	INTERGENIC
3L	8079163	3L_8079163_SNP [dm3] 3L_8086063_SNP [dm6]	A	T	5.625e^-4	1	INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	7186192	2L_7186192_SNP [dm3] 2L_7186192_SNP [dm6]	G	A	5.626e^-4	1	SYNONYMOUS_CODING CG4496 DOWNSTREAM CG4495	TF binding site mE1_TFBS_HSA
2L	2706821	2L_2706821_INS [dm3] 2L_2706821_INS [dm6]	T	TGT	5.627e^-4	1	INTRON CG31690
2R	8838436	2R_8838436_SNP [dm3] 2R_12950931_SNP [dm6]	G	A	5.633e^-4	1	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12616710	3R_12616710_SNP [dm3] 3R_16790988_SNP [dm6]	T	A	5.635e^-4	1	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12940096	3R_12940096_SNP [dm3] 3R_17114374_SNP [dm6]	T	G	5.636e^-4	1	INTRON cher
3L	15932497	3L_15932497_SNP [dm3] 3L_15939397_SNP [dm6]	A	T	5.648e^-4	1	INTRON Pka-C3
2R	10183304	2R_10183304_SNP [dm3] 2R_14295799_SNP [dm6]	A	T	5.653e^-4	1	DOWNSTREAM Ih INTRON Ih
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	5.653e^-4	1	UPSTREAM CG10597 INTERGENIC
3L	5319548	3L_5319548_SNP [dm3] 3L_5326448_SNP [dm6]	C	T	5.654e^-4	1	INTERGENIC
2L	3979929	2L_3979929_SNP [dm3] 2L_3979929_SNP [dm6]	A	C	5.654e^-4	1	INTRON fred
3L	2584105	3L_2584105_SNP [dm3] 3L_2584105_SNP [dm6]	C	A	5.659e^-4	1	INTRON msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13910976	3R_13910976_SNP [dm3] 3R_18085254_SNP [dm6]	C	A	5.662e^-4	1	INTERGENIC
3R	16731462	3R_16731462_SNP [dm3] 3R_20905740_SNP [dm6]	C	A	5.664e^-4	1	UPSTREAM TotX INTRON CG5621
X	10981098	X_10981098_SNP [dm3] X_11087065_SNP [dm6]	T	A	5.671e^-4	1	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs
X	16083294	X_16083294_DEL [dm3] X_16189261_DEL [dm6]	CATTTAA	AGG	5.672e^-4	1	INTERGENIC
2L	2630631	2L_2630631_SNP [dm3] 2L_2630631_SNP [dm6]	C	G	5.689e^-4	1	INTERGENIC
X	6402357	X_6402357_SNP [dm3] X_6508324_SNP [dm6]	C	A	5.698e^-4	1	INTRON CG42340
2R	12242849	2R_12242849_SNP [dm3] 2R_16355344_SNP [dm6]	C	G	5.704e^-4	1	UPSTREAM CG30098 INTERGENIC
3R	25212886	3R_25212886_SNP [dm3] 3R_29387164_SNP [dm6]	G	A	5.706e^-4	1	INTRON Ptp99A
X	16308634	X_16308634_SNP [dm3] X_16414601_SNP [dm6]	A	T	5.710e^-4	1	UTR_3_PRIME CG4301 UPSTREAM Traf-like DOWNSTREAM CG4301
3R	7878900	3R_7878900_SNP [dm3] 3R_12053178_SNP [dm6]	A	T	5.738e^-4	1	INTERGENIC
2R	20703079	2R_20703079_SNP [dm3] 2R_24815556_SNP [dm6]	C	T	5.763e^-4	1	SYNONYMOUS_CODING Dll	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2682970	3L_2682970_DEL [dm3] 3L_2682970_DEL [dm6]	ACTAAA	A	5.767e^-4	1	INTRON Fife
3L	2682982	3L_2682982_SNP [dm3] 3L_2682982_SNP [dm6]	C	G	5.767e^-4	1	INTRON Fife
3R	14953009	3R_14953009_SNP [dm3] 3R_19127287_SNP [dm6]	T	C	5.773e^-4	1	INTRON CG6040
3L	12492280	3L_12492280_SNP [dm3] 3L_12499180_SNP [dm6]	G	A	5.788e^-4	1	SYNONYMOUS_CODING CG10638 DOWNSTREAM CG10638 INTRON CR43868
3L	16225991	3L_16225991_SNP [dm3] 3L_16232891_SNP [dm6]	C	T	5.792e^-4	1	UPSTREAM PDCD-5 & 1 other DOWNSTREAM MED10 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9499545	3L_9499545_SNP [dm3] 3L_9506445_SNP [dm6]	C	A	5.795e^-4	1	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9516154	2L_9516154_SNP [dm3] 2L_9516154_SNP [dm6]	G	T	5.796e^-4	1	SYNONYMOUS_CODING CG33298
2L	17456270	2L_17456270_SNP [dm3] 2L_17456270_SNP [dm6]	C	A	5.798e^-4	1	UPSTREAM CG6639 DOWNSTREAM CG18563 INTRON CG5050
X	7884519	X_7884519_SNP [dm3] X_7990486_SNP [dm6]	G	A	5.816e^-4	1	INTERGENIC
3R	25158670	3R_25158670_SNP [dm3] 3R_29332948_SNP [dm6]	A	G	5.825e^-4	1	INTERGENIC
2L	12508522	2L_12508522_SNP [dm3] 2L_12508522_SNP [dm6]	G	A	5.838e^-4	1	DOWNSTREAM snoRNA:CG43051-a & 1 other INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13523688	3R_13523688_SNP [dm3] 3R_17697966_SNP [dm6]	A	G	5.841e^-4	1	INTRON osa	TF binding site mE1_TFBS_chinmo
3L	23147642	3L_23147642_SNP [dm3] 3L_23154542_SNP [dm6]	G	A	5.842e^-4	1	INTERGENIC	transposable element FlyBase
2L	12693965	2L_12693965_SNP [dm3] 2L_12693965_SNP [dm6]	A	T	5.845e^-4	1	UTR_3_PRIME CG5780 DOWNSTREAM CG6153
3R	23643170	3R_23643170_SNP [dm3] 3R_27817448_SNP [dm6]	C	T	5.845e^-4	1	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19787222	2R_19787222_SNP [dm3] 2R_23899699_SNP [dm6]	A	G	5.867e^-4	1	INTRON Lpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13944636	2L_13944636_SNP [dm3] 2L_13944636_SNP [dm6]	C	T	5.878e^-4	1	DOWNSTREAM CG16884 INTRON Ance-3
3L	17908822	3L_17908822_SNP [dm3] 3L_17915722_SNP [dm6]	G	A	5.886e^-4	1	INTERGENIC
2R	11368467	2R_11368467_SNP [dm3] 2R_15480962_SNP [dm6]	T	C	5.897e^-4	1	INTRON CG8180	TF binding site mE1_TFBS_HSA
2R	11024532	2R_11024532_SNP [dm3] 2R_15137027_SNP [dm6]	C	G	5.910e^-4	1	INTRON chn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17367056	2L_17367056_SNP [dm3] 2L_17367056_SNP [dm6]	C	T	5.916e^-4	1	DOWNSTREAM Lrch INTERGENIC
3L	8052183	3L_8052183_SNP [dm3] 3L_8059083_SNP [dm6]	T	C	5.917e^-4	1	UPSTREAM bip1 INTERGENIC
3L	2373539	3L_2373539_SNP [dm3] 3L_2373539_SNP [dm6]	G	T	5.920e^-4	1	UPSTREAM CG9004 & 1 other DOWNSTREAM CG8993 INTRON mRpL23	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26369343	3R_26369343_SNP [dm3] 3R_30543621_SNP [dm6]	G	T	5.921e^-4	1	INTRON tmod
3R	18172864	3R_18172864_SNP [dm3] 3R_22347142_SNP [dm6]	C	G	5.930e^-4	1	INTERGENIC
3R	15467300	3R_15467300_SNP [dm3] 3R_19641578_SNP [dm6]	A	C	5.945e^-4	1	UPSTREAM subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25532787	3R_25532787_INS [dm3] 3R_29707065_INS [dm6]	T	TAGCCAAGCTAAACAT...	5.954e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12318030	3L_12318030_SNP [dm3] 3L_12324930_SNP [dm6]	A	G	5.956e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14397754	2L_14397754_SNP [dm3] 2L_14397754_SNP [dm6]	C	A	5.969e^-4	1	INTRON elB
3R	2501558	3R_2501558_SNP [dm3] 3R_6675836_SNP [dm6]	A	G	5.972e^-4	1	INTRON lab
3R	25936493	3R_25936493_SNP [dm3] 3R_30110771_SNP [dm6]	T	A	5.973e^-4	1	INTRON sima
3R	13908829	3R_13908829_SNP [dm3] 3R_18083107_SNP [dm6]	T	A	5.981e^-4	1	DOWNSTREAM CG14317 INTERGENIC
3R	3553502	3R_3553502_SNP [dm3] 3R_7727780_SNP [dm6]	T	C	5.992e^-4	1	INTERGENIC
3R	2252376	3R_2252376_SNP [dm3] 3R_6426654_SNP [dm6]	A	C	5.995e^-4	1	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6336318	2R_6336318_SNP [dm3] 2R_10448813_SNP [dm6]	T	A	6.004e^-4	1	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	1107473	3L_1107473_SNP [dm3] 3L_1107473_SNP [dm6]	G	A	6.006e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	6.006e^-4	1	INTRON cpo
2L	11591681	2L_11591681_SNP [dm3] 2L_11591681_SNP [dm6]	A	C	6.007e^-4	1	UPSTREAM Acp33A INTRON kek2
3L	9308408	3L_9308408_INS [dm3] 3L_9315308_INS [dm6]	A	AA	6.013e^-4	1	INTERGENIC
2R	12304257	2R_12304257_SNP [dm3] 2R_16416752_SNP [dm6]	G	T	6.033e^-4	1	SYNONYMOUS_CODING Menl-2 UTR_3_PRIME Menl-1 INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8835658	2R_8835658_SNP [dm3] 2R_12948153_SNP [dm6]	C	G	6.040e^-4	1	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23011234	3R_23011234_SNP [dm3] 3R_27185512_SNP [dm6]	A	G	6.053e^-4	1	INTRON Ser	TF binding site mE1_TFBS_HSA
3L	18307755	3L_18307755_SNP [dm3] 3L_18314655_SNP [dm6]	T	G	6.061e^-4	1	INTERGENIC
2R	15109855	2R_15109855_SNP [dm3] 2R_19222350_SNP [dm6]	T	C	6.062e^-4	1	INTRON hppy
2R	9353680	2R_9353680_SNP [dm3] 2R_13466175_SNP [dm6]	G	A	6.074e^-4	1	INTRON arr
2L	8654632	2L_8654632_SNP [dm3] 2L_8654632_SNP [dm6]	G	A	6.075e^-4	1	INTRON Sema-1a
3L	559106	3L_559106_SNP [dm3] 3L_559106_SNP [dm6]	G	A	6.076e^-4	1	INTRON hipk
2R	8838442	2R_8838442_SNP [dm3] 2R_12950937_SNP [dm6]	C	T	6.082e^-4	1	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16225987	3L_16225987_SNP [dm3] 3L_16232887_SNP [dm6]	G	A	6.090e^-4	1	UPSTREAM PDCD-5 & 1 other DOWNSTREAM MED10 INTERGENIC	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

mn_PhototaxisScor_1w phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results