DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.328e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.5469	0.0624

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2319 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16571550	2R_16571550_SNP [dm3] 2R_20684045_SNP [dm6]	C	T	8.712e^-8	0.163	INTERGENIC
2R	16571548	2R_16571548_INS [dm3] 2R_20684043_INS [dm6]	C	CCA	3.910e^-7	0.277	INTERGENIC
2L	4888285	2L_4888285_SNP [dm3] 2L_4888285_SNP [dm6]	G	T	5.415e^-7	0.277	INTERGENIC
3R	19483956	3R_19483956_SNP [dm3] 3R_23658234_SNP [dm6]	G	A	6.782e^-7	0.277	INTRON CG31145
2L	9502906	2L_9502906_SNP [dm3] 2L_9502906_SNP [dm6]	G	A	8.526e^-7	0.277	INTRON CG33298
2L	9502864	2L_9502864_SNP [dm3] 2L_9502864_SNP [dm6]	A	G	8.861e^-7	0.277	INTRON CG33298
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	1.293e^-6	0.346	INTRON fru	TF binding site BDTNP1_TFBS_da
3L	8522729	3L_8522729_SNP [dm3] 3L_8529629_SNP [dm6]	T	C	2.117e^-6	0.427	INTRON foi
3L	6998227	3L_6998227_SNP [dm3] 3L_7005127_SNP [dm6]	C	T	2.344e^-6	0.427	INTRON Mp
2L	10044049	2L_10044049_SNP [dm3] 2L_10044049_SNP [dm6]	C	T	2.744e^-6	0.427	INTERGENIC
2R	13849309	2R_13849309_SNP [dm3] 2R_17961804_SNP [dm6]	C	T	3.302e^-6	0.427	INTERGENIC
2L	911416	2L_911416_SNP [dm3] 2L_911416_SNP [dm6]	T	C	3.338e^-6	0.427	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20115879	3R_20115879_SNP [dm3] 3R_24290157_SNP [dm6]	A	C	3.542e^-6	0.427	UPSTREAM CG6364 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19750793	3R_19750793_SNP [dm3] 3R_23925071_SNP [dm6]	T	C	3.567e^-6	0.427	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15670557	2R_15670557_SNP [dm3] 2R_19783052_SNP [dm6]	C	A	3.808e^-6	0.427	DOWNSTREAM Obp56g INTERGENIC
2L	10043973	2L_10043973_SNP [dm3] 2L_10043973_SNP [dm6]	A	T	3.927e^-6	0.427	INTERGENIC
2R	10378888	2R_10378888_SNP [dm3] 2R_14491383_SNP [dm6]	C	T	4.055e^-6	0.427	INTRON L
3L	15696222	3L_15696222_SNP [dm3] 3L_15703122_SNP [dm6]	A	T	4.110e^-6	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	14043617	3R_14043617_SNP [dm3] 3R_18217895_SNP [dm6]	G	C	4.325e^-6	0.427	UTR_3_PRIME CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad
2L	4888154	2L_4888154_SNP [dm3] 2L_4888154_SNP [dm6]	T	C	4.647e^-6	0.436	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19444344	2R_19444344_SNP [dm3] 2R_23556821_SNP [dm6]	G	A	5.133e^-6	0.441	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Rrp4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	16178677	3R_16178677_SNP [dm3] 3R_20352955_SNP [dm6]	T	C	5.173e^-6	0.441	INTERGENIC
3L	15697086	3L_15697086_SNP [dm3] 3L_15703986_SNP [dm6]	T	C	6.062e^-6	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	15697400	3L_15697400_SNP [dm3] 3L_15704300_SNP [dm6]	A	T	6.174e^-6	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15697401	3L_15697401_DEL [dm3] 3L_15704301_DEL [dm6]	AA	A	6.174e^-6	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3916039	3L_3916039_SNP [dm3] 3L_3916039_SNP [dm6]	C	T	6.232e^-6	0.449	INTRON Eip63F-1
3R	12931729	3R_12931729_SNP [dm3] 3R_17106007_SNP [dm6]	A	C	7.196e^-6	0.5	INTRON cher
3R	23301260	3R_23301260_SNP [dm3] 3R_27475538_SNP [dm6]	G	A	7.560e^-6	0.506	INTERGENIC
3L	15696526	3L_15696526_SNP [dm3] 3L_15703426_SNP [dm6]	T	A	8.676e^-6	0.507	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	14711099	X_14711099_SNP [dm3] X_14817066_SNP [dm6]	T	G	8.699e^-6	0.507	INTRON rut
2L	6889081	2L_6889081_SNP [dm3] 2L_6889081_SNP [dm6]	A	T	9.013e^-6	0.507	INTRON Nlg2
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	9.302e^-6	0.507	INTRON Con
3L	12850420	3L_12850420_SNP [dm3] 3L_12857320_SNP [dm6]	T	A	9.334e^-6	0.507	UTR_3_PRIME Ent3 & 1 other DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
2L	910348	2L_910348_SNP [dm3] 2L_910348_SNP [dm6]	C	A	9.439e^-6	0.507	INTERGENIC
2L	7518867	2L_7518867_DEL [dm3] 2L_7518867_DEL [dm6]	TT	A	9.458e^-6	0.507	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	16900300	X_16900300_SNP [dm3] X_17006267_SNP [dm6]	A	T	1.062e^-5	0.514	INTRON CG45002
2L	5732100	2L_5732100_SNP [dm3] 2L_5732100_SNP [dm6]	A	C	1.070e^-5	0.514	INTRON CG11030	TF binding site mE1_TFBS_HSA
2R	6380233	2R_6380233_SNP [dm3] 2R_10492728_SNP [dm6]	A	G	1.072e^-5	0.514	INTRON lola
3L	12903123	3L_12903123_SNP [dm3] 3L_12910023_SNP [dm6]	T	A	1.089e^-5	0.514	INTERGENIC
2R	11303819	2R_11303819_SNP [dm3] 2R_15416314_SNP [dm6]	G	T	1.101e^-5	0.514	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2349519	2L_2349519_SNP [dm3] 2L_2349519_SNP [dm6]	T	A	1.125e^-5	0.514	INTRON CG9967 & 1 other
2R	8164605	2R_8164605_SNP [dm3] 2R_12277100_SNP [dm6]	A	G	1.154e^-5	0.515	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	25893026	3R_25893026_SNP [dm3] 3R_30067304_SNP [dm6]	T	A	1.194e^-5	0.521	INTRON sima
2L	17464659	2L_17464659_SNP [dm3] 2L_17464659_SNP [dm6]	C	A	1.270e^-5	0.541	INTRON BicD
X	20848978	X_20848978_DEL [dm3] X_20977951_DEL [dm6]	CTC	C	1.365e^-5	0.553	UPSTREAM CG44426 INTERGENIC
2R	9403559	2R_9403559_SNP [dm3] 2R_13516054_SNP [dm6]	G	A	1.373e^-5	0.553	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9502756	2L_9502756_INS [dm3] 2L_9502756_INS [dm6]	C	CA	1.387e^-5	0.553	INTRON CG33298
3R	16628115	3R_16628115_SNP [dm3] 3R_20802393_SNP [dm6]	G	C	1.425e^-5	0.557	NON_SYNONYMOUS_CODING Syp SYNONYMOUS_CODING Syp INTRON Syp
2L	6761343	2L_6761343_SNP [dm3] 2L_6761343_SNP [dm6]	T	C	1.474e^-5	0.56	SYNONYMOUS_CODING CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
2R	17862432	2R_17862432_DEL [dm3] 2R_21974927_DEL [dm6]	TT	T	1.494e^-5	0.56	INTRON CG9304
X	12302761	X_12302761_SNP [dm3] X_12408728_SNP [dm6]	T	C	1.543e^-5	0.567	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15698518	3L_15698518_SNP [dm3] 3L_15705418_SNP [dm6]	C	A	1.600e^-5	0.577	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22997769	3R_22997769_SNP [dm3] 3R_27172047_SNP [dm6]	T	C	1.714e^-5	0.577	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
3R	15166857	3R_15166857_SNP [dm3] 3R_19341135_SNP [dm6]	G	A	1.739e^-5	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8722155	2R_8722155_SNP [dm3] 2R_12834650_SNP [dm6]	C	T	1.748e^-5	0.577	INTERGENIC
3R	23189005	3R_23189005_SNP [dm3] 3R_27363283_SNP [dm6]	A	G	1.771e^-5	0.577	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	23373578	3R_23373578_SNP [dm3] 3R_27547856_SNP [dm6]	T	C	1.822e^-5	0.577	UTR_3_PRIME Klp98A DOWNSTREAM Gr98d	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16180060	3R_16180060_SNP [dm3] 3R_20354338_SNP [dm6]	A	T	1.922e^-5	0.577	INTERGENIC
3L	9511706	3L_9511706_SNP [dm3] 3L_9518606_SNP [dm6]	C	G	1.924e^-5	0.577	INTRON CG33700
2R	7977914	2R_7977914_SNP [dm3] 2R_12090409_SNP [dm6]	C	T	1.959e^-5	0.577	UTR_3_PRIME jeb DOWNSTREAM jeb
3R	15166870	3R_15166870_SNP [dm3] 3R_19341148_SNP [dm6]	T	C	1.984e^-5	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8722219	2R_8722219_SNP [dm3] 2R_12834714_SNP [dm6]	C	A	2.027e^-5	0.577	INTERGENIC
2R	8185395	2R_8185395_SNP [dm3] 2R_12297890_SNP [dm6]	A	C	2.033e^-5	0.577	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
2R	15671347	2R_15671347_SNP [dm3] 2R_19783842_SNP [dm6]	C	T	2.077e^-5	0.577	SYNONYMOUS_CODING Obp56g UPSTREAM CR45231
3R	16179247	3R_16179247_SNP [dm3] 3R_20353525_SNP [dm6]	A	G	2.140e^-5	0.577	INTERGENIC
2R	8264558	2R_8264558_SNP [dm3] 2R_12377053_SNP [dm6]	G	A	2.179e^-5	0.577	INTRON Cpr49Aa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17508283	2L_17508283_SNP [dm3] 2L_17508283_SNP [dm6]	G	A	2.214e^-5	0.577	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2R	13382921	2R_13382921_SNP [dm3] 2R_17495416_SNP [dm6]	T	C	2.223e^-5	0.577	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16063953	X_16063953_SNP [dm3] X_16169920_SNP [dm6]	G	A	2.237e^-5	0.577	INTERGENIC
3R	18527555	3R_18527555_SNP [dm3] 3R_22701833_SNP [dm6]	C	A	2.260e^-5	0.577	UTR_5_PRIME CCAP UPSTREAM CG6972 & 1 other	TF binding site mE1_TFBS_HSA
3R	22976301	3R_22976301_DEL [dm3] 3R_27150579_DEL [dm6]	CTCAC	C	2.271e^-5	0.577	UTR_5_PRIME CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12982667	2L_12982667_SNP [dm3] 2L_12982667_SNP [dm6]	G	C	2.282e^-5	0.577	INTERGENIC
2R	17867506	2R_17867506_SNP [dm3] 2R_21980001_SNP [dm6]	G	A	2.292e^-5	0.577	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
2R	10378918	2R_10378918_SNP [dm3] 2R_14491413_SNP [dm6]	G	T	2.295e^-5	0.577	INTRON L
3R	18663601	3R_18663601_SNP [dm3] 3R_22837879_SNP [dm6]	C	T	2.328e^-5	0.577	INTERGENIC
3R	26649682	3R_26649682_SNP [dm3] 3R_30823960_SNP [dm6]	G	T	2.338e^-5	0.577	INTRON cindr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	22997724	3R_22997724_SNP [dm3] 3R_27172002_SNP [dm6]	T	C	2.379e^-5	0.579	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2L	14455923	2L_14455923_SNP [dm3] 2L_14455923_SNP [dm6]	G	A	2.421e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
X	16063952	X_16063952_SNP [dm3] X_16169919_SNP [dm6]	A	G	2.483e^-5	0.585	INTERGENIC
2L	18515398	2L_18515398_SNP [dm3] 2L_18515398_SNP [dm6]	A	G	2.523e^-5	0.585	INTERGENIC
3R	23295244	3R_23295244_SNP [dm3] 3R_27469522_SNP [dm6]	G	A	2.557e^-5	0.585	INTERGENIC
2R	8185317	2R_8185317_SNP [dm3] 2R_12297812_SNP [dm6]	A	G	2.615e^-5	0.585	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
2L	17464648	2L_17464648_SNP [dm3] 2L_17464648_SNP [dm6]	C	G	2.616e^-5	0.585	INTRON BicD
2R	19277481	2R_19277481_SNP [dm3] 2R_23389958_SNP [dm6]	G	A	2.623e^-5	0.585	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16628201	3R_16628201_SNP [dm3] 3R_20802479_SNP [dm6]	T	G	2.705e^-5	0.597	NON_SYNONYMOUS_CODING Syp INTRON Syp
3R	23300301	3R_23300301_SNP [dm3] 3R_27474579_SNP [dm6]	G	C	2.811e^-5	0.597	INTERGENIC
3L	15698458	3L_15698458_SNP [dm3] 3L_15705358_SNP [dm6]	C	A	2.818e^-5	0.597	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11737156	2R_11737156_SNP [dm3] 2R_15849651_SNP [dm6]	T	G	2.868e^-5	0.597	NON_SYNONYMOUS_CODING tun
3R	16628213	3R_16628213_SNP [dm3] 3R_20802491_SNP [dm6]	T	G	2.960e^-5	0.597	NON_SYNONYMOUS_CODING Syp INTRON Syp
2L	4888152	2L_4888152_SNP [dm3] 2L_4888152_SNP [dm6]	T	C	2.975e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14058218	2R_14058218_SNP [dm3] 2R_18170713_SNP [dm6]	A	C	2.985e^-5	0.597	SPLICE_SITE_REGION Dgp-1 INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13659751	3R_13659751_SNP [dm3] 3R_17834029_SNP [dm6]	G	A	2.989e^-5	0.597	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	14549915	X_14549915_SNP [dm3] X_14655882_SNP [dm6]	C	G	3.034e^-5	0.597	INTERGENIC
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	3.035e^-5	0.597	INTERGENIC
3R	16180059	3R_16180059_SNP [dm3] 3R_20354337_SNP [dm6]	G	A	3.069e^-5	0.597	INTERGENIC
3R	25893176	3R_25893176_SNP [dm3] 3R_30067454_SNP [dm6]	C	A	3.107e^-5	0.597	SYNONYMOUS_CODING sima
3R	12931727	3R_12931727_SNP [dm3] 3R_17106005_SNP [dm6]	G	T	3.118e^-5	0.597	INTRON cher
3L	9014596	3L_9014596_SNP [dm3] 3L_9021496_SNP [dm6]	C	T	3.118e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22997785	3R_22997785_SNP [dm3] 3R_27172063_SNP [dm6]	A	C	3.175e^-5	0.597	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2L	4888027	2L_4888027_SNP [dm3] 2L_4888027_SNP [dm6]	A	T	3.184e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14096762	2L_14096762_SNP [dm3] 2L_14096762_SNP [dm6]	T	G	3.286e^-5	0.61	INTERGENIC
3L	6114411	3L_6114411_SNP [dm3] 3L_6121311_SNP [dm6]	G	T	3.321e^-5	0.611	INTRON Ets65A	TF binding site mE1_TFBS_HSA
2R	12157768	2R_12157768_SNP [dm3] 2R_16270263_SNP [dm6]	A	G	3.371e^-5	0.613	INTRON Khc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14586612	X_14586612_SNP [dm3] X_14692579_SNP [dm6]	T	C	3.465e^-5	0.613	INTRON NetB
2R	16190695	2R_16190695_SNP [dm3] 2R_20303190_SNP [dm6]	T	C	3.476e^-5	0.613	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
3R	16128216	3R_16128216_SNP [dm3] 3R_20302494_SNP [dm6]	T	A	3.497e^-5	0.613	UTR_3_PRIME cic
3R	25266674	3R_25266674_MNP [dm3] 3R_29440952_MNP [dm6]	GCT	ATA	3.499e^-5	0.613	INTRON Ptp99A
3R	13974639	3R_13974639_SNP [dm3] 3R_18148917_SNP [dm6]	A	G	3.668e^-5	0.63	INTERGENIC
3R	14145818	3R_14145818_SNP [dm3] 3R_18320096_SNP [dm6]	A	C	3.670e^-5	0.63	INTRON CG31235
2R	9853825	2R_9853825_SNP [dm3] 2R_13966320_SNP [dm6]	G	A	3.695e^-5	0.63	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12302743	X_12302743_SNP [dm3] X_12408710_SNP [dm6]	G	T	3.788e^-5	0.635	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17452409	2R_17452409_SNP [dm3] 2R_21564904_SNP [dm6]	C	A	3.792e^-5	0.635	INTRON CG10440
3R	25167469	3R_25167469_SNP [dm3] 3R_29341747_SNP [dm6]	C	T	4.000e^-5	0.652	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20860649	X_20860649_SNP [dm3] X_20989622_SNP [dm6]	T	C	4.013e^-5	0.652	INTERGENIC
3R	22732730	3R_22732730_DEL [dm3] 3R_26907008_DEL [dm6]	GTACCGCG	G	4.027e^-5	0.652	INTRON T48	regulatory region REDfly_CRMs
3R	8262805	3R_8262805_SNP [dm3] 3R_12437083_SNP [dm6]	T	A	4.032e^-5	0.652	DOWNSTREAM CG17207 INTRON Desat2
X	12302716	X_12302716_SNP [dm3] X_12408683_SNP [dm6]	T	G	4.105e^-5	0.658	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15292288	2R_15292288_SNP [dm3] 2R_19404783_SNP [dm6]	C	T	4.303e^-5	0.684	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15670779	2R_15670779_SNP [dm3] 2R_19783274_SNP [dm6]	A	G	4.352e^-5	0.684	DOWNSTREAM Obp56g INTERGENIC
X	17178902	X_17178902_SNP [dm3] X_17284869_SNP [dm6]	G	A	4.386e^-5	0.684	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
X	2280704	X_2280704_SNP [dm3] X_2386671_SNP [dm6]	C	T	4.471e^-5	0.684	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20116128	3R_20116128_SNP [dm3] 3R_24290406_SNP [dm6]	G	A	4.479e^-5	0.684	SYNONYMOUS_CODING CG6364 UPSTREAM CG34290	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16471700	3L_16471700_SNP [dm3] 3L_16478600_SNP [dm6]	G	A	4.485e^-5	0.684	INTRON CG33158 & 1 other
3R	25299426	3R_25299426_SNP [dm3] 3R_29473704_SNP [dm6]	T	A	4.635e^-5	0.701	INTRON Ptp99A
2R	17868417	2R_17868417_SNP [dm3] 2R_21980912_SNP [dm6]	A	T	4.717e^-5	0.703	INTRON Gr58a
3R	23976648	3R_23976648_DEL [dm3] 3R_28150926_DEL [dm6]	CTTTGCACACCCACAC...	C	4.772e^-5	0.703	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9943133	3L_9943133_SNP [dm3] 3L_9950033_SNP [dm6]	C	A	4.781e^-5	0.703	INTRON CG34356
X	6478907	X_6478907_SNP [dm3] X_6584874_SNP [dm6]	G	T	4.836e^-5	0.703	UTR_3_PRIME CG34417 INTRON CG34417
2R	14019719	2R_14019719_SNP [dm3] 2R_18132214_SNP [dm6]	G	A	4.871e^-5	0.703	SYNONYMOUS_CODING Hsf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3915926	3L_3915926_SNP [dm3] 3L_3915926_SNP [dm6]	C	A	4.888e^-5	0.703	INTRON Eip63F-1
3R	21236413	3R_21236413_SNP [dm3] 3R_25410691_SNP [dm6]	G	A	4.933e^-5	0.703	INTRON Fur1
2L	14779867	2L_14779867_SNP [dm3] 2L_14779867_SNP [dm6]	T	A	5.002e^-5	0.703	INTERGENIC
2R	14074383	2R_14074383_SNP [dm3] 2R_18186878_SNP [dm6]	A	G	5.020e^-5	0.703	UPSTREAM CG14499 INTRON CG33958
2R	8174397	2R_8174397_SNP [dm3] 2R_12286892_SNP [dm6]	T	C	5.024e^-5	0.703	INTRON CG42700
2R	9390383	2R_9390383_SNP [dm3] 2R_13502878_SNP [dm6]	G	A	5.099e^-5	0.708	UTR_5_PRIME mars UPSTREAM mars & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	8173174	2R_8173174_SNP [dm3] 2R_12285669_SNP [dm6]	G	A	5.132e^-5	0.708	UPSTREAM CG42700 INTRON CG42700
2L	13868705	2L_13868705_SNP [dm3] 2L_13868705_SNP [dm6]	G	A	5.250e^-5	0.718	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17014442	2R_17014442_SNP [dm3] 2R_21126937_SNP [dm6]	T	C	5.394e^-5	0.718	NON_SYNONYMOUS_CODING CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	8885658	3L_8885658_SNP [dm3] 3L_8892558_SNP [dm6]	C	T	5.396e^-5	0.718	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3R	13849909	3R_13849909_SNP [dm3] 3R_18024187_SNP [dm6]	C	T	5.431e^-5	0.718	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2R	18329702	2R_18329702_SNP [dm3] 2R_22442197_SNP [dm6]	C	T	5.463e^-5	0.718	INTERGENIC
2R	15592512	2R_15592512_SNP [dm3] 2R_19705007_SNP [dm6]	C	T	5.481e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs
2R	8273967	2R_8273967_SNP [dm3] 2R_12386462_SNP [dm6]	C	T	5.531e^-5	0.718	UPSTREAM Cpr49Ac INTERGENIC
X	19056477	X_19056477_SNP [dm3] X_19162444_SNP [dm6]	G	T	5.563e^-5	0.718	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	10528364	3L_10528364_SNP [dm3] 3L_10535264_SNP [dm6]	C	A	5.608e^-5	0.718	INTRON A2bp1
2R	5017279	2R_5017279_SNP [dm3] 2R_9129774_SNP [dm6]	G	A	5.621e^-5	0.718	INTRON CG18659
2R	15670995	2R_15670995_SNP [dm3] 2R_19783490_SNP [dm6]	C	T	5.629e^-5	0.718	UTR_3_PRIME Obp56g UPSTREAM CR45231
2R	17867631	2R_17867631_SNP [dm3] 2R_21980126_SNP [dm6]	C	T	5.790e^-5	0.733	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	16485040	3R_16485040_SNP [dm3] 3R_20659318_SNP [dm6]	A	T	5.920e^-5	0.738	INTRON Nep4
2R	6384483	2R_6384483_DEL [dm3] 2R_10496978_DEL [dm6]	CCGCGC	C	5.973e^-5	0.738	UTR_3_PRIME lola INTRON lola	TF binding site mE1_TFBS_cad
3R	13962401	3R_13962401_SNP [dm3] 3R_18136679_SNP [dm6]	G	T	5.997e^-5	0.738	INTERGENIC
3L	12286353	3L_12286353_SNP [dm3] 3L_12293253_SNP [dm6]	A	G	6.023e^-5	0.738	INTRON CG4328	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14509457	2R_14509457_SNP [dm3] 2R_18621952_SNP [dm6]	C	A	6.110e^-5	0.738	INTRON Atg7 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22997400	3R_22997400_SNP [dm3] 3R_27171678_SNP [dm6]	G	A	6.168e^-5	0.738	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
3L	606029	3L_606029_SNP [dm3] 3L_606029_SNP [dm6]	T	A	6.184e^-5	0.738	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2R	17862422	2R_17862422_SNP [dm3] 2R_21974917_SNP [dm6]	C	T	6.190e^-5	0.738	INTRON CG9304
2L	6889094	2L_6889094_SNP [dm3] 2L_6889094_SNP [dm6]	C	A	6.273e^-5	0.738	INTRON Nlg2
2R	8190466	2R_8190466_SNP [dm3] 2R_12302961_SNP [dm6]	G	A	6.312e^-5	0.738	SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
2L	4888035	2L_4888035_SNP [dm3] 2L_4888035_SNP [dm6]	G	T	6.328e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11834977	2L_11834977_SNP [dm3] 2L_11834977_SNP [dm6]	G	T	6.361e^-5	0.738	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
3R	25167528	3R_25167528_SNP [dm3] 3R_29341806_SNP [dm6]	C	A	6.370e^-5	0.738	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23293534	3R_23293534_SNP [dm3] 3R_27467812_SNP [dm6]	T	C	6.434e^-5	0.738	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15409554	2R_15409554_SNP [dm3] 2R_19522049_SNP [dm6]	T	G	6.484e^-5	0.738	UTR_3_PRIME sm
2L	16991628	2L_16991628_SNP [dm3] 2L_16991628_SNP [dm6]	A	T	6.490e^-5	0.738	INTRON beat-IIIb
3L	8536491	3L_8536491_SNP [dm3] 3L_8543391_SNP [dm6]	A	G	6.498e^-5	0.738	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22705704	3R_22705704_SNP [dm3] 3R_26879982_SNP [dm6]	G	T	6.715e^-5	0.758	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	25404672	3R_25404672_SNP [dm3] 3R_29578950_SNP [dm6]	A	C	6.756e^-5	0.759	INTERGENIC
3L	6114447	3L_6114447_SNP [dm3] 3L_6121347_SNP [dm6]	C	T	6.812e^-5	0.76	INTRON Ets65A	TF binding site mE1_TFBS_HSA
X	15581655	X_15581655_SNP [dm3] X_15687622_SNP [dm6]	T	A	6.894e^-5	0.761	INTRON CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9702986	2R_9702986_SNP [dm3] 2R_13815481_SNP [dm6]	C	A	6.896e^-5	0.761	INTRON stj
X	5463328	X_5463328_SNP [dm3] X_5569295_SNP [dm6]	C	T	7.004e^-5	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	395367	3L_395367_SNP [dm3] 3L_395367_SNP [dm6]	T	C	7.033e^-5	0.763	INTERGENIC	regulatory region REDfly_CRMs
2L	4238637	2L_4238637_SNP [dm3] 2L_4238637_SNP [dm6]	C	A	7.051e^-5	0.763	INTERGENIC
2R	15671411	2R_15671411_SNP [dm3] 2R_19783906_SNP [dm6]	T	A	7.077e^-5	0.763	UPSTREAM CR45231 INTRON Obp56g
X	17178401	X_17178401_SNP [dm3] X_17284368_SNP [dm6]	A	G	7.160e^-5	0.765	NON_SYNONYMOUS_CODING CG8661 SPLICE_SITE_REGION CG8661 INTRON CG5445
3L	6114418	3L_6114418_SNP [dm3] 3L_6121318_SNP [dm6]	T	A	7.178e^-5	0.765	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	17649515	3L_17649515_SNP [dm3] 3L_17656415_SNP [dm6]	A	C	7.647e^-5	0.778	DOWNSTREAM CG7484 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8272164	2R_8272164_SNP [dm3] 2R_12384659_SNP [dm6]	T	C	7.708e^-5	0.778	DOWNSTREAM CG8501 INTERGENIC
2R	8272878	2R_8272878_SNP [dm3] 2R_12385373_SNP [dm6]	T	C	7.726e^-5	0.778	DOWNSTREAM CG8501 INTERGENIC
2L	11909212	2L_11909212_SNP [dm3] 2L_11909212_SNP [dm6]	T	C	7.736e^-5	0.778	INTRON Pde1c
3L	8542043	3L_8542043_SNP [dm3] 3L_8548943_SNP [dm6]	T	A	7.816e^-5	0.778	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3R	18263457	3R_18263457_SNP [dm3] 3R_22437735_SNP [dm6]	T	C	7.852e^-5	0.778	INTERGENIC
3R	21207861	3R_21207861_SNP [dm3] 3R_25382139_SNP [dm6]	T	A	7.877e^-5	0.778	SYNONYMOUS_CODING alrm INTRON Fur1
X	6478909	X_6478909_MNP [dm3] X_6584876_MNP [dm6]	CTA	GAT	7.913e^-5	0.778	UTR_3_PRIME CG34417 INTRON CG34417
X	6478913	X_6478913_MNP [dm3] X_6584880_MNP [dm6]	ACA	TGC	7.913e^-5	0.778	UTR_3_PRIME CG34417 INTRON CG34417
3L	4809541	3L_4809541_SNP [dm3] 3L_4809541_SNP [dm6]	T	G	7.916e^-5	0.778	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7505187	2L_7505187_DEL [dm3] 2L_7505187_DEL [dm6]	TG	C	7.942e^-5	0.778	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3R	23269211	3R_23269211_SNP [dm3] 3R_27443489_SNP [dm6]	C	A	7.951e^-5	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20343571	X_20343571_SNP [dm3] X_20472544_SNP [dm6]	G	A	8.002e^-5	0.778	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6114407	3L_6114407_SNP [dm3] 3L_6121307_SNP [dm6]	G	A	8.022e^-5	0.778	INTRON Ets65A	TF binding site mE1_TFBS_HSA
X	21230679	X_21230679_SNP [dm3] X_21359652_SNP [dm6]	T	C	8.096e^-5	0.778	SYNONYMOUS_CODING Sep1	TF binding site mE1_TFBS_cad
3L	3484406	3L_3484406_SNP [dm3] 3L_3484406_SNP [dm6]	G	T	8.113e^-5	0.778	INTRON CG42324 & 1 other
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	8.118e^-5	0.778	INTERGENIC
3R	23364227	3R_23364227_SNP [dm3] 3R_27538505_SNP [dm6]	A	C	8.124e^-5	0.778	UPSTREAM CR44289 EXON CR44288
2L	908958	2L_908958_SNP [dm3] 2L_908958_SNP [dm6]	T	G	8.151e^-5	0.778	INTERGENIC
2R	17868791	2R_17868791_INS [dm3] 2R_21981286_INS [dm6]	A	AAGTAGCACCA...	8.250e^-5	0.778	DOWNSTREAM Gr58a INTERGENIC
3R	25266572	3R_25266572_SNP [dm3] 3R_29440850_SNP [dm6]	T	C	8.303e^-5	0.778	INTRON Ptp99A
2L	5732098	2L_5732098_SNP [dm3] 2L_5732098_SNP [dm6]	C	T	8.304e^-5	0.778	INTRON CG11030	TF binding site mE1_TFBS_HSA
3L	13548845	3L_13548845_DEL [dm3] 3L_13555745_DEL [dm6]	ACACA	A	8.537e^-5	0.778	INTRON bru-3
3L	1857085	3L_1857085_SNP [dm3] 3L_1857085_SNP [dm6]	G	T	8.567e^-5	0.778	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25266671	3R_25266671_SNP [dm3] 3R_29440949_SNP [dm6]	A	T	8.627e^-5	0.778	INTRON Ptp99A
3R	18263470	3R_18263470_SNP [dm3] 3R_22437748_SNP [dm6]	A	G	8.709e^-5	0.778	INTERGENIC
3R	18263501	3R_18263501_SNP [dm3] 3R_22437779_SNP [dm6]	G	A	8.713e^-5	0.778	INTERGENIC
2L	1091740	2L_1091740_DEL [dm3] 2L_1091740_DEL [dm6]	GAG	G	8.816e^-5	0.778	INTRON CG4629
3R	13166374	3R_13166374_SNP [dm3] 3R_17340652_SNP [dm6]	T	C	8.843e^-5	0.778	INTRON beat-IIa
2R	14450661	2R_14450661_SNP [dm3] 2R_18563156_SNP [dm6]	C	T	8.943e^-5	0.778	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	606015	3L_606015_SNP [dm3] 3L_606015_SNP [dm6]	A	G	8.961e^-5	0.778	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
3R	25266672	3R_25266672_SNP [dm3] 3R_29440950_SNP [dm6]	T	G	9.022e^-5	0.778	INTRON Ptp99A
2R	15417274	2R_15417274_INS [dm3] 2R_19529769_INS [dm6]	A	AA	9.032e^-5	0.778	UTR_3_PRIME sm DOWNSTREAM sm
2L	13888815	2L_13888815_SNP [dm3] 2L_13888815_SNP [dm6]	A	C	9.067e^-5	0.778	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14038981	3R_14038981_SNP [dm3] 3R_18213259_SNP [dm6]	T	C	9.165e^-5	0.778	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16352076	3L_16352076_DEL [dm3] 3L_16358976_DEL [dm6]	GG	G	9.188e^-5	0.778	INTRON CG45057	TF binding site BDTNP1_TFBS_z
3L	4809565	3L_4809565_SNP [dm3] 3L_4809565_SNP [dm6]	C	A	9.328e^-5	0.778	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8186583	2R_8186583_SNP [dm3] 2R_12299078_SNP [dm6]	G	A	9.392e^-5	0.778	UTR_3_PRIME CG42700 DOWNSTREAM CG42700 INTRON CG8850
3R	10370500	3R_10370500_SNP [dm3] 3R_14544778_SNP [dm6]	G	A	9.495e^-5	0.778	INTRON Pde6
2L	17101851	2L_17101851_SNP [dm3] 2L_17101851_SNP [dm6]	T	C	9.514e^-5	0.778	INTERGENIC
3L	9023736	3L_9023736_SNP [dm3] 3L_9030636_SNP [dm6]	C	G	9.634e^-5	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9380712	2R_9380712_SNP [dm3] 2R_13493207_SNP [dm6]	C	G	9.647e^-5	0.778	INTRON bbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16178457	3R_16178457_DEL [dm3] 3R_20352735_DEL [dm6]	AAGTAAATAA	A	9.741e^-5	0.778	INTERGENIC
2R	17852295	2R_17852295_SNP [dm3] 2R_21964790_SNP [dm6]	G	T	9.811e^-5	0.778	INTRON ppk9
3L	393292	3L_393292_SNP [dm3] 3L_393292_SNP [dm6]	A	G	9.923e^-5	0.778	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
X	15580981	X_15580981_SNP [dm3] X_15686948_SNP [dm6]	C	T	9.964e^-5	0.778	SPLICE_SITE_REGION CG15599 SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	25266663	3R_25266663_SNP [dm3] 3R_29440941_SNP [dm6]	T	A	9.987e^-5	0.778	INTRON Ptp99A
3R	21725739	3R_21725739_DEL [dm3] 3R_25900017_DEL [dm6]	TT	T	1.001e^-4	0.778	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
3L	19381568	3L_19381568_SNP [dm3] 3L_19388468_SNP [dm6]	A	C	1.003e^-4	0.778	SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
3L	4809448	3L_4809448_SNP [dm3] 3L_4809448_SNP [dm6]	T	C	1.006e^-4	0.778	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22191194	3R_22191194_SNP [dm3] 3R_26365472_SNP [dm6]	C	T	1.009e^-4	0.778	INTERGENIC
X	9185382	X_9185382_DEL [dm3] X_9291349_DEL [dm6]	AGCTCG	A	1.015e^-4	0.778	INTRON lz
X	12302723	X_12302723_SNP [dm3] X_12408690_SNP [dm6]	T	G	1.017e^-4	0.778	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12302745	X_12302745_SNP [dm3] X_12408712_SNP [dm6]	G	A	1.017e^-4	0.778	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5912484	3L_5912484_SNP [dm3] 3L_5919384_SNP [dm6]	G	A	1.030e^-4	0.778	INTRON CG10483 & 1 other	TF binding site mE1_TFBS_cad
X	4428944	X_4428944_INS [dm3] X_4534911_INS [dm6]	C	CA	1.040e^-4	0.778	UTR_3_PRIME CG3556 DOWNSTREAM rb INTRON CR32773
2L	8086299	2L_8086299_SNP [dm3] 2L_8086299_SNP [dm6]	C	A	1.040e^-4	0.778	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
2L	8086302	2L_8086302_SNP [dm3] 2L_8086302_SNP [dm6]	G	T	1.040e^-4	0.778	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
2R	14061395	2R_14061395_SNP [dm3] 2R_18173890_SNP [dm6]	A	G	1.043e^-4	0.778	SYNONYMOUS_CODING CG10916 DOWNSTREAM CR45315	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	16233497	3R_16233497_SNP [dm3] 3R_20407775_SNP [dm6]	C	T	1.043e^-4	0.778	NON_SYNONYMOUS_CODING CG4335 UPSTREAM CG10881 INTRON Gfrl
2L	13873062	2L_13873062_SNP [dm3] 2L_13873062_SNP [dm6]	T	C	1.049e^-4	0.778	INTRON CenG1A
3R	16178498	3R_16178498_SNP [dm3] 3R_20352776_SNP [dm6]	G	T	1.050e^-4	0.778	INTERGENIC
3R	13705606	3R_13705606_SNP [dm3] 3R_17879884_SNP [dm6]	C	T	1.051e^-4	0.778	INTRON Rim
3L	3770606	3L_3770606_SNP [dm3] 3L_3770606_SNP [dm6]	C	G	1.056e^-4	0.778	INTRON CG32264
2L	4888011	2L_4888011_SNP [dm3] 2L_4888011_SNP [dm6]	C	T	1.067e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10119862	3R_10119862_SNP [dm3] 3R_14294140_SNP [dm6]	T	C	1.073e^-4	0.778	INTRON CG12207
2L	6644298	2L_6644298_SNP [dm3] 2L_6644298_SNP [dm6]	G	T	1.081e^-4	0.778	INTRON CG31635	TF binding site BDTNP1_TFBS_dl
2R	15671383	2R_15671383_SNP [dm3] 2R_19783878_SNP [dm6]	A	G	1.090e^-4	0.778	SYNONYMOUS_CODING Obp56g UPSTREAM CR45231
3L	15756020	3L_15756020_SNP [dm3] 3L_15762920_SNP [dm6]	G	A	1.097e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17094699	2L_17094699_DEL [dm3] 2L_17094699_DEL [dm6]	AA	T	1.101e^-4	0.778	INTERGENIC
2L	5969945	2L_5969945_SNP [dm3] 2L_5969945_SNP [dm6]	A	T	1.104e^-4	0.778	NON_SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14103428	3L_14103428_SNP [dm3] 3L_14110328_SNP [dm6]	T	G	1.105e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	23904162	3R_23904162_SNP [dm3] 3R_28078440_SNP [dm6]	T	C	1.117e^-4	0.778	INTRON CG34362
3R	5416145	3R_5416145_SNP [dm3] 3R_9590423_SNP [dm6]	A	C	1.123e^-4	0.778	SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312 DOWNSTREAM P58IPK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3R	16127662	3R_16127662_INS [dm3] 3R_20301940_INS [dm6]	C	CC	1.124e^-4	0.778	UTR_3_PRIME cic DOWNSTREAM cic
2R	14061116	2R_14061116_SNP [dm3] 2R_18173611_SNP [dm6]	G	A	1.125e^-4	0.778	UPSTREAM CG10916 DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17649856	3L_17649856_SNP [dm3] 3L_17656756_SNP [dm6]	G	C	1.126e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	12478675	2R_12478675_SNP [dm3] 2R_16591170_SNP [dm6]	C	A	1.136e^-4	0.778	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
X	16899715	X_16899715_SNP [dm3] X_17005682_SNP [dm6]	C	T	1.136e^-4	0.778	INTRON CG45002
2R	14019280	2R_14019280_SNP [dm3] 2R_18131775_SNP [dm6]	T	G	1.140e^-4	0.778	INTRON Hsf	TF binding site mE1_TFBS_sens
2L	10654982	2L_10654982_SNP [dm3] 2L_10654982_SNP [dm6]	T	G	1.141e^-4	0.778	DOWNSTREAM CG17098 INTERGENIC
2R	6412310	2R_6412310_SNP [dm3] 2R_10524805_SNP [dm6]	G	A	1.144e^-4	0.778	UTR_3_PRIME lola INTRON lola
3R	16180083	3R_16180083_SNP [dm3] 3R_20354361_SNP [dm6]	T	C	1.145e^-4	0.778	INTERGENIC
2R	14061107	2R_14061107_SNP [dm3] 2R_18173602_SNP [dm6]	A	C	1.153e^-4	0.778	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17962210	2R_17962210_SNP [dm3] 2R_22074705_SNP [dm6]	A	G	1.157e^-4	0.778	SPLICE_SITE_REGION CG2921 INTRON CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22705671	3R_22705671_SNP [dm3] 3R_26879949_SNP [dm6]	T	A	1.158e^-4	0.778	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
X	2710513	X_2710513_INS [dm3] X_2816480_INS [dm6]	G	AA	1.164e^-4	0.778	INTRON kirre
3R	13166376	3R_13166376_SNP [dm3] 3R_17340654_SNP [dm6]	A	G	1.165e^-4	0.778	INTRON beat-IIa
2L	11108215	2L_11108215_SNP [dm3] 2L_11108215_SNP [dm6]	T	C	1.166e^-4	0.778	NON_SYNONYMOUS_CODING l_2_gd1	TF binding site mE1_TFBS_chinmo
2R	6357862	2R_6357862_SNP [dm3] 2R_10470357_SNP [dm6]	T	G	1.168e^-4	0.778	DOWNSTREAM CG11777 INTRON whd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19073694	2R_19073694_SNP [dm3] 2R_23186171_SNP [dm6]	A	C	1.172e^-4	0.778	DOWNSTREAM CG13539 INTRON CG34371
3R	25606150	3R_25606150_SNP [dm3] 3R_29780428_SNP [dm6]	T	G	1.180e^-4	0.778	UTR_5_PRIME fig INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16899734	X_16899734_SNP [dm3] X_17005701_SNP [dm6]	T	A	1.188e^-4	0.778	INTRON CG45002
3R	23487779	3R_23487779_SNP [dm3] 3R_27662057_SNP [dm6]	A	G	1.193e^-4	0.778	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26027924	3R_26027924_SNP [dm3] 3R_30202202_SNP [dm6]	A	G	1.195e^-4	0.778	INTRON CG9743	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7825196	2L_7825196_SNP [dm3] 2L_7825196_SNP [dm6]	T	C	1.199e^-4	0.778	UTR_3_PRIME CG7115 DOWNSTREAM Rack1
3R	23822270	3R_23822270_SNP [dm3] 3R_27996548_SNP [dm6]	C	T	1.200e^-4	0.778	INTERGENIC
3L	17640270	3L_17640270_SNP [dm3] 3L_17647170_SNP [dm6]	A	C	1.201e^-4	0.778	UPSTREAM CG43085 DOWNSTREAM Ndfip INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3R	20112538	3R_20112538_SNP [dm3] 3R_24286816_SNP [dm6]	C	G	1.202e^-4	0.778	SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12261649	3L_12261649_SNP [dm3] 3L_12268549_SNP [dm6]	G	A	1.208e^-4	0.778	SYNONYMOUS_CODING CG32100 DOWNSTREAM Pbgs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13230004	2L_13230004_SNP [dm3] 2L_13230004_SNP [dm6]	A	G	1.210e^-4	0.778	SYNONYMOUS_CODING CG16815	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	606006	3L_606006_SNP [dm3] 3L_606006_SNP [dm6]	C	A	1.237e^-4	0.778	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2L	5784944	2L_5784944_SNP [dm3] 2L_5784944_SNP [dm6]	A	G	1.238e^-4	0.778	DOWNSTREAM CG31913 INTRON CG9171
3R	24679032	3R_24679032_SNP [dm3] 3R_28853310_SNP [dm6]	A	C	1.247e^-4	0.778	SYNONYMOUS_CODING spg DOWNSTREAM Inx3
2R	17867520	2R_17867520_SNP [dm3] 2R_21980015_SNP [dm6]	A	T	1.250e^-4	0.778	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
X	4983665	X_4983665_DEL [dm3] X_5089632_DEL [dm6]	AT	A	1.254e^-4	0.778	UTR_5_PRIME rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6358261	2R_6358261_DEL [dm3] 2R_10470756_DEL [dm6]	GG	G	1.255e^-4	0.778	SPLICE_SITE_REGION whd INTRON whd
3R	22705672	3R_22705672_SNP [dm3] 3R_26879950_SNP [dm6]	A	G	1.261e^-4	0.778	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	23000866	3R_23000866_SNP [dm3] 3R_27175144_SNP [dm6]	C	G	1.262e^-4	0.778	INTRON Ser
X	7875358	X_7875358_SNP [dm3] X_7981325_SNP [dm6]	T	C	1.265e^-4	0.778	INTRON sn
2L	13888784	2L_13888784_INS [dm3] 2L_13888784_INS [dm6]	G	GA	1.276e^-4	0.778	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15409471	2R_15409471_SNP [dm3] 2R_19521966_SNP [dm6]	T	C	1.277e^-4	0.778	UTR_3_PRIME sm
2R	15409728	2R_15409728_SNP [dm3] 2R_19522223_SNP [dm6]	A	C	1.278e^-4	0.778	UTR_3_PRIME sm
2R	8174202	2R_8174202_SNP [dm3] 2R_12286697_SNP [dm6]	A	G	1.288e^-4	0.778	INTRON CG42700
2L	1213704	2L_1213704_SNP [dm3] 2L_1213704_SNP [dm6]	T	A	1.291e^-4	0.778	DOWNSTREAM CR45346 INTERGENIC
2R	17868541	2R_17868541_SNP [dm3] 2R_21981036_SNP [dm6]	G	C	1.296e^-4	0.778	SYNONYMOUS_CODING Gr58a
2L	6713239	2L_6713239_SNP [dm3] 2L_6713239_SNP [dm6]	T	C	1.330e^-4	0.778	INTRON AkhR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13296239	3L_13296239_SNP [dm3] 3L_13303139_SNP [dm6]	C	T	1.340e^-4	0.778	UPSTREAM CR44555 DOWNSTREAM CR43911 EXON CR44557
3L	6114430	3L_6114430_SNP [dm3] 3L_6121330_SNP [dm6]	A	G	1.343e^-4	0.778	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3R	16133876	3R_16133876_SNP [dm3] 3R_20308154_SNP [dm6]	C	T	1.349e^-4	0.778	UPSTREAM CG4362 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13873069	2L_13873069_SNP [dm3] 2L_13873069_SNP [dm6]	A	C	1.352e^-4	0.778	INTRON CenG1A
3L	14054454	3L_14054454_SNP [dm3] 3L_14061354_SNP [dm6]	A	G	1.371e^-4	0.778	INTRON CG32138
3R	13962358	3R_13962358_SNP [dm3] 3R_18136636_SNP [dm6]	G	A	1.382e^-4	0.778	INTERGENIC
X	15104222	X_15104222_SNP [dm3] X_15210189_SNP [dm6]	A	T	1.390e^-4	0.778	UPSTREAM CG5662 INTERGENIC
2L	14779927	2L_14779927_SNP [dm3] 2L_14779927_SNP [dm6]	A	G	1.405e^-4	0.778	INTERGENIC
3L	10274649	3L_10274649_SNP [dm3] 3L_10281549_SNP [dm6]	G	C	1.409e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19381591	3L_19381591_SNP [dm3] 3L_19388491_SNP [dm6]	G	A	1.413e^-4	0.778	SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
2R	12158372	2R_12158372_SNP [dm3] 2R_16270867_SNP [dm6]	A	G	1.421e^-4	0.778	INTRON Khc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17183948	3R_17183948_SNP [dm3] 3R_21358226_SNP [dm6]	T	G	1.426e^-4	0.778	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
2R	17325343	2R_17325343_SNP [dm3] 2R_21437838_SNP [dm6]	C	T	1.426e^-4	0.778	INTRON Sdc
2R	17868422	2R_17868422_SNP [dm3] 2R_21980917_SNP [dm6]	T	A	1.430e^-4	0.778	INTRON Gr58a
3R	24821497	3R_24821497_SNP [dm3] 3R_28995775_SNP [dm6]	C	A	1.431e^-4	0.778	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10636096	2L_10636096_SNP [dm3] 2L_10636096_SNP [dm6]	T	A	1.438e^-4	0.778	INTRON CG7329
3L	8538550	3L_8538550_SNP [dm3] 3L_8545450_SNP [dm6]	C	T	1.439e^-4	0.778	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14011624	2R_14011624_SNP [dm3] 2R_18124119_SNP [dm6]	A	G	1.454e^-4	0.778	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16250131	X_16250131_SNP [dm3] X_16356098_SNP [dm6]	C	A	1.458e^-4	0.778	UTR_3_PRIME sl DOWNSTREAM U2af50	TF binding site BDTNP1_TFBS_dl
3R	14033712	3R_14033712_SNP [dm3] 3R_18207990_SNP [dm6]	G	A	1.461e^-4	0.778	UPSTREAM CG44158 INTRON CG7985
2R	8208771	2R_8208771_SNP [dm3] 2R_12321266_SNP [dm6]	G	A	1.471e^-4	0.778	UTR_5_PRIME CG13163 UPSTREAM CR44316	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20115786	3R_20115786_SNP [dm3] 3R_24290064_SNP [dm6]	A	G	1.472e^-4	0.778	UPSTREAM CG6364 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15309612	2R_15309612_SNP [dm3] 2R_19422107_SNP [dm6]	C	T	1.472e^-4	0.778	INTRON hts	TF binding site BDTNP1_TFBS_dl
3L	6114483	3L_6114483_SNP [dm3] 3L_6121383_SNP [dm6]	G	A	1.472e^-4	0.778	INTRON Ets65A	TF binding site mE1_TFBS_HSA
2L	12381019	2L_12381019_SNP [dm3] 2L_12381019_SNP [dm6]	G	T	1.481e^-4	0.778	INTRON bru-2
3R	9928745	3R_9928745_SNP [dm3] 3R_14103023_SNP [dm6]	G	A	1.483e^-4	0.778	UTR_5_PRIME PK1-R UPSTREAM PK1-R
3R	25279755	3R_25279755_SNP [dm3] 3R_29454033_SNP [dm6]	T	A	1.484e^-4	0.778	INTRON Ptp99A
3R	16012979	3R_16012979_DEL [dm3] 3R_20187257_DEL [dm6]	TACCAGTTATTGGATATAGT...	T	1.488e^-4	0.778	INTERGENIC
3L	6114432	3L_6114432_SNP [dm3] 3L_6121332_SNP [dm6]	T	A	1.489e^-4	0.778	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	393289	3L_393289_SNP [dm3] 3L_393289_SNP [dm6]	G	A	1.491e^-4	0.778	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
2L	22011958	2L_22011958_SNP [dm3] 2L_22011958_SNP [dm6]	G	C	1.503e^-4	0.778	INTERGENIC
3L	9943010	3L_9943010_SNP [dm3] 3L_9949910_SNP [dm6]	A	T	1.506e^-4	0.778	INTRON CG34356
2R	8189781	2R_8189781_DEL [dm3] 2R_12302276_DEL [dm6]	GAATCCACGCAGCGG...	G	1.516e^-4	0.778	UPSTREAM CG8850 DOWNSTREAM SIP2 INTERGENIC
X	17178889	X_17178889_SNP [dm3] X_17284856_SNP [dm6]	C	T	1.517e^-4	0.778	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2R	8272801	2R_8272801_SNP [dm3] 2R_12385296_SNP [dm6]	T	C	1.523e^-4	0.778	DOWNSTREAM CG8501 INTERGENIC
2R	7656128	2R_7656128_SNP [dm3] 2R_11768623_SNP [dm6]	A	G	1.535e^-4	0.778	INTRON ths & 1 other
2L	17249008	2L_17249008_SNP [dm3] 2L_17249008_SNP [dm6]	T	C	1.536e^-4	0.778	INTRON beat-IIIc
2R	18788795	2R_18788795_SNP [dm3] 2R_22901272_SNP [dm6]	T	G	1.536e^-4	0.778	INTRON nahoda
2L	583317	2L_583317_SNP [dm3] 2L_583317_SNP [dm6]	C	A	1.552e^-4	0.778	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	606027	3L_606027_SNP [dm3] 3L_606027_SNP [dm6]	G	A	1.556e^-4	0.778	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2L	19508857	2L_19508857_SNP [dm3] 2L_19508857_SNP [dm6]	C	A	1.556e^-4	0.778	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	11348912	3L_11348912_SNP [dm3] 3L_11355812_SNP [dm6]	C	G	1.561e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6429378	3L_6429378_SNP [dm3] 3L_6436278_SNP [dm6]	G	A	1.563e^-4	0.778	INTRON CG42747	TF binding site mE1_TFBS_cad
2R	11836036	2R_11836036_SNP [dm3] 2R_15948531_SNP [dm6]	T	C	1.564e^-4	0.778	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1438468	2L_1438468_SNP [dm3] 2L_1438468_SNP [dm6]	T	C	1.566e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	2119966	2R_2119966_DEL [dm3] 2R_6232461_DEL [dm6]	TCAATGTTT	T	1.582e^-4	0.778	INTRON bin3
3R	7729280	3R_7729280_SNP [dm3] 3R_11903558_SNP [dm6]	G	C	1.582e^-4	0.778	INTRON Cad87A
2R	14057994	2R_14057994_SNP [dm3] 2R_18170489_SNP [dm6]	A	G	1.587e^-4	0.778	SYNONYMOUS_CODING Dgp-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5024825	2L_5024825_SNP [dm3] 2L_5024825_SNP [dm6]	T	G	1.595e^-4	0.778	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20099919	3R_20099919_SNP [dm3] 3R_24274197_SNP [dm6]	T	C	1.599e^-4	0.778	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8174204	2R_8174204_SNP [dm3] 2R_12286699_SNP [dm6]	C	T	1.603e^-4	0.778	INTRON CG42700
3R	23304237	3R_23304237_SNP [dm3] 3R_27478515_SNP [dm6]	A	G	1.619e^-4	0.778	UPSTREAM Cyp6a18 INTERGENIC
2R	8167588	2R_8167588_SNP [dm3] 2R_12280083_SNP [dm6]	C	G	1.630e^-4	0.778	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
2L	8086249	2L_8086249_SNP [dm3] 2L_8086249_SNP [dm6]	G	A	1.630e^-4	0.778	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10380473	2R_10380473_SNP [dm3] 2R_14492968_SNP [dm6]	G	T	1.632e^-4	0.778	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11125190	3R_11125190_SNP [dm3] 3R_15299468_SNP [dm6]	C	A	1.633e^-4	0.778	INTRON Tm1
2R	11304510	2R_11304510_DEL [dm3] 2R_15417005_DEL [dm6]	CTC	C	1.635e^-4	0.778	INTRON CG43729
2R	10401731	2R_10401731_SNP [dm3] 2R_14514226_SNP [dm6]	G	A	1.636e^-4	0.778	INTRON Cpr51A & 1 other
3L	12468774	3L_12468774_SNP [dm3] 3L_12475674_SNP [dm6]	G	A	1.638e^-4	0.778	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
2R	15670962	2R_15670962_SNP [dm3] 2R_19783457_SNP [dm6]	G	A	1.641e^-4	0.778	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
X	17173391	X_17173391_SNP [dm3] X_17279358_SNP [dm6]	A	C	1.641e^-4	0.778	INTRON f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7040159	2R_7040159_SNP [dm3] 2R_11152654_SNP [dm6]	A	G	1.642e^-4	0.778	INTRON CG13229
3R	23188905	3R_23188905_SNP [dm3] 3R_27363183_SNP [dm6]	A	C	1.644e^-4	0.778	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3L	1491924	3L_1491924_SNP [dm3] 3L_1491924_SNP [dm6]	A	G	1.646e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5970240	2L_5970240_SNP [dm3] 2L_5970240_SNP [dm6]	C	T	1.647e^-4	0.778	SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16013032	3R_16013032_SNP [dm3] 3R_20187310_SNP [dm6]	A	C	1.664e^-4	0.778	INTERGENIC
3R	16013033	3R_16013033_SNP [dm3] 3R_20187311_SNP [dm6]	T	C	1.664e^-4	0.778	INTERGENIC
3L	10664361	3L_10664361_SNP [dm3] 3L_10671261_SNP [dm6]	G	A	1.666e^-4	0.778	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	395363	3L_395363_SNP [dm3] 3L_395363_SNP [dm6]	T	A	1.672e^-4	0.778	INTERGENIC	regulatory region REDfly_CRMs
3R	15473617	3R_15473617_INS [dm3] 3R_19647895_INS [dm6]	T	TTAAACTAAAATGT...	1.675e^-4	0.778	UPSTREAM CG31220 DOWNSTREAM Nup58 INTRON CG6195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6359176	2R_6359176_SNP [dm3] 2R_10471671_SNP [dm6]	G	A	1.678e^-4	0.778	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_inv
2R	4980626	2R_4980626_SNP [dm3] 2R_9093121_SNP [dm6]	G	A	1.693e^-4	0.778	UTR_3_PRIME CG13741 UPSTREAM CG8080	TF binding site BDTNP1_TFBS_dl
3R	16013002	3R_16013002_SNP [dm3] 3R_20187280_SNP [dm6]	A	T	1.702e^-4	0.778	INTERGENIC
2L	18511492	2L_18511492_SNP [dm3] 2L_18511492_SNP [dm6]	T	C	1.707e^-4	0.778	INTRON CG10178
2L	4888043	2L_4888043_SNP [dm3] 2L_4888043_SNP [dm6]	A	T	1.709e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17166097	3R_17166097_INS [dm3] 3R_21340375_INS [dm6]	A	AA	1.709e^-4	0.778	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
3R	16128328	3R_16128328_SNP [dm3] 3R_20302606_SNP [dm6]	T	C	1.709e^-4	0.778	UTR_3_PRIME cic
2R	11775807	2R_11775807_SNP [dm3] 2R_15888302_SNP [dm6]	G	A	1.715e^-4	0.778	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_GATAe
2R	15670751	2R_15670751_SNP [dm3] 2R_19783246_SNP [dm6]	A	T	1.718e^-4	0.778	DOWNSTREAM Obp56g INTERGENIC
2L	14159418	2L_14159418_SNP [dm3] 2L_14159418_SNP [dm6]	G	T	1.732e^-4	0.778	UTR_3_PRIME CG17341
2L	17213431	2L_17213431_SNP [dm3] 2L_17213431_SNP [dm6]	T	C	1.737e^-4	0.778	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14155898	2L_14155898_SNP [dm3] 2L_14155898_SNP [dm6]	G	A	1.737e^-4	0.778	INTRON CG17341
2R	15310575	2R_15310575_SNP [dm3] 2R_19423070_SNP [dm6]	G	A	1.740e^-4	0.778	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	16137327	3R_16137327_SNP [dm3] 3R_20311605_SNP [dm6]	A	G	1.750e^-4	0.778	INTRON CG42668
3R	13947847	3R_13947847_SNP [dm3] 3R_18122125_SNP [dm6]	G	A	1.760e^-4	0.778	UTR_5_PRIME sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6353124	2R_6353124_INS [dm3] 2R_10465619_INS [dm6]	T	TTAAAAAAAAAA...	1.768e^-4	0.778	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6114486	3L_6114486_SNP [dm3] 3L_6121386_SNP [dm6]	T	A	1.770e^-4	0.778	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3R	17183946	3R_17183946_SNP [dm3] 3R_21358224_SNP [dm6]	C	T	1.782e^-4	0.778	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	14447938	3R_14447938_SNP [dm3] 3R_18622216_SNP [dm6]	C	T	1.788e^-4	0.778	UPSTREAM CG14304 INTRON qin
2L	18383466	2L_18383466_SNP [dm3] 2L_18383466_SNP [dm6]	C	G	1.793e^-4	0.778	SYNONYMOUS_CODING Fas3	TF binding site mE1_TFBS_cad
2R	8166123	2R_8166123_DEL [dm3] 2R_12278618_DEL [dm6]	ACTACCCAA	A	1.797e^-4	0.778	UTR_3_PRIME Cam
2L	2292188	2L_2292188_SNP [dm3] 2L_2292188_SNP [dm6]	C	T	1.800e^-4	0.778	INTERGENIC
3L	1491978	3L_1491978_SNP [dm3] 3L_1491978_SNP [dm6]	C	T	1.808e^-4	0.778	SPLICE_SITE_REGION CG12084 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8736690	X_8736690_SNP [dm3] X_8842657_SNP [dm6]	G	A	1.812e^-4	0.778	INTRON CG12075
2R	6539042	2R_6539042_SNP [dm3] 2R_10651537_SNP [dm6]	C	G	1.825e^-4	0.778	INTERGENIC
3L	22119169	3L_22119169_SNP [dm3] 3L_22126069_SNP [dm6]	C	A	1.834e^-4	0.778	INTERGENIC
X	15639878	X_15639878_SNP [dm3] X_15745845_SNP [dm6]	C	T	1.839e^-4	0.778	SYNONYMOUS_CODING CG8944 UPSTREAM Tcp-1zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21470933	3R_21470933_SNP [dm3] 3R_25645211_SNP [dm6]	C	T	1.846e^-4	0.778	INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	14155983	2L_14155983_SNP [dm3] 2L_14155983_SNP [dm6]	A	G	1.848e^-4	0.778	INTRON CG17341
3L	11347682	3L_11347682_SNP [dm3] 3L_11354582_SNP [dm6]	T	C	1.849e^-4	0.778	INTERGENIC
2R	8166660	2R_8166660_INS [dm3] 2R_12279155_INS [dm6]	T	TGTAT	1.852e^-4	0.778	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2L	4888477	2L_4888477_SNP [dm3] 2L_4888477_SNP [dm6]	G	T	1.858e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	1.874e^-4	0.778	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
3L	19772277	3L_19772277_SNP [dm3] 3L_19779177_SNP [dm6]	T	A	1.881e^-4	0.778	INTRON CG42637 & 1 other
3R	22733949	3R_22733949_DEL [dm3] 3R_26908227_DEL [dm6]	AGA	A	1.883e^-4	0.778	INTRON T48
3L	5912625	3L_5912625_SNP [dm3] 3L_5919525_SNP [dm6]	C	T	1.883e^-4	0.778	INTRON CG10483 EXON CR45167	TF binding site mE1_TFBS_cad
3R	22705799	3R_22705799_SNP [dm3] 3R_26880077_SNP [dm6]	G	C	1.883e^-4	0.778	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
2L	15786550	2L_15786550_SNP [dm3] 2L_15786550_SNP [dm6]	C	A	1.885e^-4	0.778	NON_SYNONYMOUS_CODING CG18109
3R	9503994	3R_9503994_SNP [dm3] 3R_13678272_SNP [dm6]	T	C	1.891e^-4	0.778	SPLICE_SITE_REGION lkb1 INTRON lkb1
3L	13609605	3L_13609605_SNP [dm3] 3L_13616505_SNP [dm6]	A	G	1.893e^-4	0.778	INTRON bru-3
2L	12376576	2L_12376576_SNP [dm3] 2L_12376576_SNP [dm6]	T	C	1.893e^-4	0.778	INTRON bru-2
3R	16178561	3R_16178561_SNP [dm3] 3R_20352839_SNP [dm6]	C	T	1.895e^-4	0.778	INTERGENIC
3L	9943109	3L_9943109_SNP [dm3] 3L_9950009_SNP [dm6]	G	T	1.896e^-4	0.778	INTRON CG34356
3L	1491948	3L_1491948_SNP [dm3] 3L_1491948_SNP [dm6]	A	T	1.899e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2121237	2L_2121237_SNP [dm3] 2L_2121237_SNP [dm6]	A	T	1.900e^-4	0.778	INTERGENIC
3R	13659888	3R_13659888_SNP [dm3] 3R_17834166_SNP [dm6]	G	A	1.903e^-4	0.778	INTRON tinc	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	17866560	2R_17866560_SNP [dm3] 2R_21979055_SNP [dm6]	T	C	1.905e^-4	0.778	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
3R	16178534	3R_16178534_SNP [dm3] 3R_20352812_SNP [dm6]	G	A	1.913e^-4	0.778	INTERGENIC
3L	9014600	3L_9014600_SNP [dm3] 3L_9021500_SNP [dm6]	T	G	1.915e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11392862	3L_11392862_SNP [dm3] 3L_11399762_SNP [dm6]	C	G	1.927e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6114468	3L_6114468_MNP [dm3] 3L_6121368_MNP [dm6]	GAA	AGT	1.930e^-4	0.778	INTRON Ets65A	TF binding site mE1_TFBS_HSA
2L	12502056	2L_12502056_SNP [dm3] 2L_12502056_SNP [dm6]	G	C	1.932e^-4	0.778	INTRON bun	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8019423	3L_8019423_SNP [dm3] 3L_8026323_SNP [dm6]	A	T	1.938e^-4	0.778	INTRON nmo
3L	1857382	3L_1857382_SNP [dm3] 3L_1857382_SNP [dm6]	G	A	1.946e^-4	0.778	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12299026	2L_12299026_SNP [dm3] 2L_12299026_SNP [dm6]	T	C	1.948e^-4	0.778	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13759884	3R_13759884_DEL [dm3] 3R_17934162_DEL [dm6]	AT	A	1.964e^-4	0.778	INTRON cpo
2L	13805696	2L_13805696_SNP [dm3] 2L_13805696_SNP [dm6]	C	T	1.965e^-4	0.778	INTRON CAH1
2L	13805701	2L_13805701_SNP [dm3] 2L_13805701_SNP [dm6]	G	T	1.965e^-4	0.778	INTRON CAH1
3R	18102911	3R_18102911_SNP [dm3] 3R_22277189_SNP [dm6]	A	T	1.966e^-4	0.778	INTRON SKIP
3R	16232671	3R_16232671_SNP [dm3] 3R_20406949_SNP [dm6]	A	T	1.974e^-4	0.778	SYNONYMOUS_CODING CG4335 INTRON Gfrl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10401736	2R_10401736_SNP [dm3] 2R_14514231_SNP [dm6]	C	T	1.975e^-4	0.778	INTRON Cpr51A & 1 other
3L	13482133	3L_13482133_SNP [dm3] 3L_13489033_SNP [dm6]	G	A	1.976e^-4	0.778	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	20292562	3R_20292562_SNP [dm3] 3R_24466840_SNP [dm6]	A	C	1.977e^-4	0.778	INTERGENIC
2L	3198471	2L_3198471_SNP [dm3] 2L_3198471_SNP [dm6]	T	A	1.988e^-4	0.778	INTRON CG34393
3R	16178481	3R_16178481_SNP [dm3] 3R_20352759_SNP [dm6]	C	T	1.994e^-4	0.778	INTERGENIC
2L	17508373	2L_17508373_SNP [dm3] 2L_17508373_SNP [dm6]	T	C	1.995e^-4	0.778	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
3L	1491968	3L_1491968_SNP [dm3] 3L_1491968_SNP [dm6]	G	A	1.998e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17612848	3R_17612848_SNP [dm3] 3R_21787126_SNP [dm6]	A	G	2.003e^-4	0.778	UPSTREAM CRG INTRON CASK
2R	10379775	2R_10379775_SNP [dm3] 2R_14492270_SNP [dm6]	T	A	2.005e^-4	0.778	INTRON L	TF binding site mE1_TFBS_cad
2L	3949294	2L_3949294_SNP [dm3] 2L_3949294_SNP [dm6]	C	T	2.010e^-4	0.778	INTRON fred
3L	395360	3L_395360_SNP [dm3] 3L_395360_SNP [dm6]	G	A	2.013e^-4	0.778	INTERGENIC	regulatory region REDfly_CRMs
2L	17308866	2L_17308866_SNP [dm3] 2L_17308866_SNP [dm6]	T	C	2.014e^-4	0.778	INTERGENIC
2R	15671974	2R_15671974_SNP [dm3] 2R_19784469_SNP [dm6]	T	A	2.022e^-4	0.778	UPSTREAM Obp56g EXON CR45231	regulatory region REDfly_CRMs
2L	4578079	2L_4578079_SNP [dm3] 2L_4578079_SNP [dm6]	A	T	2.024e^-4	0.778	NON_SYNONYMOUS_CODING HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6515636	2L_6515636_SNP [dm3] 2L_6515636_SNP [dm6]	C	T	2.035e^-4	0.778	INTRON CG31637
3R	7738282	3R_7738282_MNP [dm3] 3R_11912560_MNP [dm6]	TGG	CCA	2.038e^-4	0.778	INTRON Cad87A
2R	6366396	2R_6366396_DEL [dm3] 2R_10478891_DEL [dm6]	GTGTTCTG	G	2.038e^-4	0.778	UPSTREAM whd DOWNSTREAM trsn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	3879600	X_3879600_DEL [dm3] X_3985567_DEL [dm6]	CT	C	2.040e^-4	0.778	INTERGENIC
2L	5970288	2L_5970288_SNP [dm3] 2L_5970288_SNP [dm6]	C	T	2.042e^-4	0.778	SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18263424	3R_18263424_SNP [dm3] 3R_22437702_SNP [dm6]	A	G	2.045e^-4	0.778	INTERGENIC
2L	20256304	2L_20256304_SNP [dm3] 2L_20256304_SNP [dm6]	C	T	2.045e^-4	0.778	SYNONYMOUS_CODING CG17571	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7690211	3R_7690211_SNP [dm3] 3R_11864489_SNP [dm6]	G	A	2.052e^-4	0.778	INTRON CG6959
3R	13511286	3R_13511286_SNP [dm3] 3R_17685564_SNP [dm6]	A	G	2.057e^-4	0.778	UTR_3_PRIME CG31360 UPSTREAM CG31251 DOWNSTREAM CG31249	TF binding site mE1_TFBS_HSA
3R	9581590	3R_9581590_SNP [dm3] 3R_13755868_SNP [dm6]	A	G	2.070e^-4	0.778	UTR_3_PRIME CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad
X	16900295	X_16900295_SNP [dm3] X_17006262_SNP [dm6]	T	A	2.072e^-4	0.778	INTRON CG45002
3L	15691193	3L_15691193_SNP [dm3] 3L_15698093_SNP [dm6]	T	C	2.076e^-4	0.778	SYNONYMOUS_CODING comm2
3R	13759878	3R_13759878_SNP [dm3] 3R_17934156_SNP [dm6]	T	A	2.084e^-4	0.778	INTRON cpo
3R	21535345	3R_21535345_SNP [dm3] 3R_25709623_SNP [dm6]	A	T	2.084e^-4	0.778	INTRON LpR2
2R	8165706	2R_8165706_SNP [dm3] 2R_12278201_SNP [dm6]	C	T	2.088e^-4	0.778	UTR_3_PRIME Cam
3L	14101663	3L_14101663_SNP [dm3] 3L_14108563_SNP [dm6]	G	A	2.089e^-4	0.778	UPSTREAM Sox21a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14101679	3L_14101679_SNP [dm3] 3L_14108579_SNP [dm6]	T	A	2.089e^-4	0.778	UPSTREAM Sox21a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14102907	3L_14102907_SNP [dm3] 3L_14109807_SNP [dm6]	G	T	2.089e^-4	0.778	INTERGENIC
3L	14103373	3L_14103373_SNP [dm3] 3L_14110273_SNP [dm6]	G	A	2.089e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14104577	3L_14104577_SNP [dm3] 3L_14111477_SNP [dm6]	G	T	2.089e^-4	0.778	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7120189	2L_7120189_SNP [dm3] 2L_7120189_SNP [dm6]	C	T	2.093e^-4	0.778	INTRON Pvf3
2L	9422414	2L_9422414_SNP [dm3] 2L_9422414_SNP [dm6]	A	T	2.102e^-4	0.778	INTRON Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4530158	X_4530158_SNP [dm3] X_4636125_SNP [dm6]	A	C	2.102e^-4	0.778	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15310636	2R_15310636_SNP [dm3] 2R_19423131_SNP [dm6]	T	A	2.117e^-4	0.778	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	4240249	3R_4240249_SNP [dm3] 3R_8414527_SNP [dm6]	T	C	2.122e^-4	0.778	INTRON CG45263
X	18899484	X_18899484_SNP [dm3] X_19005451_SNP [dm6]	A	T	2.133e^-4	0.778	INTRON CG43759
2R	13150935	2R_13150935_SNP [dm3] 2R_17263430_SNP [dm6]	C	T	2.135e^-4	0.778	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9788410	3L_9788410_SNP [dm3] 3L_9795310_SNP [dm6]	G	A	2.138e^-4	0.778	INTRON Zasp67
3R	23042371	3R_23042371_SNP [dm3] 3R_27216649_SNP [dm6]	G	A	2.139e^-4	0.778	EXON CR34006
3R	19674405	3R_19674405_SNP [dm3] 3R_23848683_SNP [dm6]	A	C	2.150e^-4	0.778	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad
3R	26649581	3R_26649581_SNP [dm3] 3R_30823859_SNP [dm6]	A	T	2.156e^-4	0.778	INTRON cindr
3R	24028277	3R_24028277_DEL [dm3] 3R_28202555_DEL [dm6]	AGGGTGCATGTCGAAGGAAA...	A	2.157e^-4	0.778	INTRON CG34354
3R	16179974	3R_16179974_SNP [dm3] 3R_20354252_SNP [dm6]	G	A	2.166e^-4	0.778	INTERGENIC
3L	15697266	3L_15697266_SNP [dm3] 3L_15704166_SNP [dm6]	A	G	2.168e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	8086305	2L_8086305_SNP [dm3] 2L_8086305_SNP [dm6]	G	C	2.168e^-4	0.778	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
2L	3949276	2L_3949276_INS [dm3] 2L_3949276_INS [dm6]	T	TGAAGTT	2.179e^-4	0.778	INTRON fred
3R	25743489	3R_25743489_SNP [dm3] 3R_29917767_SNP [dm6]	C	T	2.181e^-4	0.778	INTRON trp
3L	14101469	3L_14101469_SNP [dm3] 3L_14108369_SNP [dm6]	C	A	2.200e^-4	0.778	UPSTREAM Sox21a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9545525	3L_9545525_SNP [dm3] 3L_9552425_SNP [dm6]	T	A	2.210e^-4	0.778	INTRON CG42673
3R	19433145	3R_19433145_SNP [dm3] 3R_23607423_SNP [dm6]	G	T	2.215e^-4	0.778	UTR_3_PRIME CG31145 INTRON CG31145
2R	11736014	2R_11736014_SNP [dm3] 2R_15848509_SNP [dm6]	G	T	2.215e^-4	0.778	SPLICE_SITE_ACCEPTOR tun UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
3R	16064369	3R_16064369_SNP [dm3] 3R_20238647_SNP [dm6]	T	A	2.224e^-4	0.778	INTRON Nlg4
2L	15787383	2L_15787383_SNP [dm3] 2L_15787383_SNP [dm6]	A	G	2.228e^-4	0.778	SYNONYMOUS_CODING CG18109
2R	15282821	2R_15282821_SNP [dm3] 2R_19395316_SNP [dm6]	G	A	2.234e^-4	0.778	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	13577900	2L_13577900_SNP [dm3] 2L_13577900_SNP [dm6]	C	A	2.234e^-4	0.778	INTRON kuz
3L	3720830	3L_3720830_SNP [dm3] 3L_3720830_SNP [dm6]	T	C	2.237e^-4	0.778	INTRON CG32264
3L	1491945	3L_1491945_SNP [dm3] 3L_1491945_SNP [dm6]	A	T	2.239e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1120252	2L_1120252_SNP [dm3] 2L_1120252_SNP [dm6]	C	T	2.241e^-4	0.778	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10406271	2R_10406271_SNP [dm3] 2R_14518766_SNP [dm6]	C	A	2.242e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11636030	2R_11636030_SNP [dm3] 2R_15748525_SNP [dm6]	G	C	2.244e^-4	0.778	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19453788	2R_19453788_SNP [dm3] 2R_23566265_SNP [dm6]	T	C	2.249e^-4	0.778	INTRON apt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	902724	3L_902724_SNP [dm3] 3L_902724_SNP [dm6]	A	T	2.252e^-4	0.778	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
X	2710502	X_2710502_SNP [dm3] X_2816469_SNP [dm6]	G	A	2.252e^-4	0.778	INTRON kirre
2R	17867505	2R_17867505_SNP [dm3] 2R_21980000_SNP [dm6]	C	G	2.258e^-4	0.778	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3L	889406	3L_889406_SNP [dm3] 3L_889406_SNP [dm6]	G	T	2.263e^-4	0.778	NON_SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9284037	X_9284037_SNP [dm3] X_9390004_SNP [dm6]	G	A	2.267e^-4	0.778	INTRON mgl
2R	9853362	2R_9853362_SNP [dm3] 2R_13965857_SNP [dm6]	T	C	2.268e^-4	0.778	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16133042	3R_16133042_SNP [dm3] 3R_20307320_SNP [dm6]	T	C	2.274e^-4	0.778	INTRON CG4362	TF binding site BDTNP1_TFBS_dl
2R	14637218	2R_14637218_INS [dm3] 2R_18749713_INS [dm6]	A	AA	2.276e^-4	0.778	INTRON Hs3st-A
2R	10401738	2R_10401738_SNP [dm3] 2R_14514233_SNP [dm6]	C	T	2.280e^-4	0.778	INTRON Cpr51A & 1 other
3L	14103002	3L_14103002_SNP [dm3] 3L_14109902_SNP [dm6]	C	T	2.283e^-4	0.778	INTERGENIC
2R	12168207	2R_12168207_DEL [dm3] 2R_16280702_DEL [dm6]	GG	G	2.295e^-4	0.778	UPSTREAM CG15705 DOWNSTREAM CG15704 & 1 other INTERGENIC
2L	14770740	2L_14770740_SNP [dm3] 2L_14770740_SNP [dm6]	C	G	2.307e^-4	0.778	INTERGENIC
2L	5292484	2L_5292484_SNP [dm3] 2L_5292484_SNP [dm6]	T	C	2.308e^-4	0.778	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18658348	3L_18658348_SNP [dm3] 3L_18665248_SNP [dm6]	A	G	2.319e^-4	0.778	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
2R	12543166	2R_12543166_SNP [dm3] 2R_16655661_SNP [dm6]	A	C	2.328e^-4	0.778	UTR_3_PRIME Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
3R	25167717	3R_25167717_SNP [dm3] 3R_29341995_SNP [dm6]	T	A	2.332e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15034540	2L_15034540_SNP [dm3] 2L_15034540_SNP [dm6]	A	G	2.339e^-4	0.778	UTR_3_PRIME GABA-B-R1 UPSTREAM yellow-c DOWNSTREAM GABA-B-R1
3R	19674675	3R_19674675_SNP [dm3] 3R_23848953_SNP [dm6]	C	T	2.348e^-4	0.778	INTRON CG34355
3L	17129467	3L_17129467_SNP [dm3] 3L_17136367_SNP [dm6]	A	C	2.349e^-4	0.778	INTRON Rbp6
3L	8914468	3L_8914468_SNP [dm3] 3L_8921368_SNP [dm6]	T	C	2.353e^-4	0.778	INTRON Tsp66E
3L	9231451	3L_9231451_SNP [dm3] 3L_9238351_SNP [dm6]	C	A	2.353e^-4	0.778	INTERGENIC
2L	18513010	2L_18513010_SNP [dm3] 2L_18513010_SNP [dm6]	G	C	2.355e^-4	0.778	SYNONYMOUS_CODING CG10178	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25266664	3R_25266664_SNP [dm3] 3R_29440942_SNP [dm6]	A	G	2.368e^-4	0.778	INTRON Ptp99A
2R	8189704	2R_8189704_SNP [dm3] 2R_12302199_SNP [dm6]	A	G	2.369e^-4	0.778	UTR_5_PRIME CG8850 DOWNSTREAM SIP2
3L	5590968	3L_5590968_DEL [dm3] 3L_5597868_DEL [dm6]	TGCAGAGC	T	2.373e^-4	0.778	DOWNSTREAM CG5150 & 1 other INTERGENIC
3L	5590977	3L_5590977_DEL [dm3] 3L_5597877_DEL [dm6]	GA	G	2.373e^-4	0.778	DOWNSTREAM CG5150 & 1 other INTERGENIC
2R	17865373	2R_17865373_SNP [dm3] 2R_21977868_SNP [dm6]	T	C	2.374e^-4	0.778	SYNONYMOUS_CODING Gr58c DOWNSTREAM Gr58b
3R	20885427	3R_20885427_SNP [dm3] 3R_25059705_SNP [dm6]	A	T	2.375e^-4	0.778	INTRON Unc-13-4B
3R	21236936	3R_21236936_SNP [dm3] 3R_25411214_SNP [dm6]	A	G	2.381e^-4	0.778	INTRON Fur1
3L	9736602	3L_9736602_SNP [dm3] 3L_9743502_SNP [dm6]	C	T	2.385e^-4	0.778	INTRON CG42268 & 1 other
2R	10380536	2R_10380536_SNP [dm3] 2R_14493031_SNP [dm6]	T	C	2.389e^-4	0.778	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5514705	3L_5514705_SNP [dm3] 3L_5521605_SNP [dm6]	C	G	2.392e^-4	0.778	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16900256	X_16900256_INS [dm3] X_17006223_INS [dm6]	A	AT	2.396e^-4	0.778	INTRON CG45002
3R	16013093	3R_16013093_SNP [dm3] 3R_20187371_SNP [dm6]	A	G	2.398e^-4	0.778	INTERGENIC
3R	25301625	3R_25301625_SNP [dm3] 3R_29475903_SNP [dm6]	T	G	2.404e^-4	0.778	INTRON Ptp99A
3R	13715822	3R_13715822_SNP [dm3] 3R_17890100_SNP [dm6]	T	A	2.408e^-4	0.778	INTRON Rim
2L	4046350	2L_4046350_SNP [dm3] 2L_4046350_SNP [dm6]	A	T	2.417e^-4	0.778	INTRON ed	TF binding site mE1_TFBS_HSA
2R	12116330	2R_12116330_SNP [dm3] 2R_16228825_SNP [dm6]	G	A	2.421e^-4	0.778	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21023786	3R_21023786_SNP [dm3] 3R_25198064_SNP [dm6]	T	A	2.422e^-4	0.778	NON_SYNONYMOUS_CODING Cad96Ca
2L	13437146	2L_13437146_SNP [dm3] 2L_13437146_SNP [dm6]	G	T	2.422e^-4	0.778	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3L	16257732	3L_16257732_SNP [dm3] 3L_16264632_SNP [dm6]	A	T	2.424e^-4	0.778	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19505538	2L_19505538_SNP [dm3] 2L_19505538_SNP [dm6]	G	A	2.426e^-4	0.778	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18903893	3R_18903893_SNP [dm3] 3R_23078171_SNP [dm6]	T	C	2.431e^-4	0.778	INTRON CG13830
2L	6713296	2L_6713296_SNP [dm3] 2L_6713296_SNP [dm6]	C	A	2.434e^-4	0.778	INTRON AkhR	TF binding site mE1_TFBS_chinmo
3R	23299220	3R_23299220_SNP [dm3] 3R_27473498_SNP [dm6]	T	C	2.436e^-4	0.778	INTERGENIC
2L	17094705	2L_17094705_SNP [dm3] 2L_17094705_SNP [dm6]	G	A	2.439e^-4	0.778	INTERGENIC
2L	1619091	2L_1619091_SNP [dm3] 2L_1619091_SNP [dm6]	C	T	2.444e^-4	0.778	DOWNSTREAM CR44603 EXON CR44603
2R	8167586	2R_8167586_SNP [dm3] 2R_12280081_SNP [dm6]	A	G	2.449e^-4	0.778	START_GAINED CG42700 UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
2R	17029273	2R_17029273_SNP [dm3] 2R_21141768_SNP [dm6]	T	A	2.451e^-4	0.778	START_GAINED Magi UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	10401734	2R_10401734_SNP [dm3] 2R_14514229_SNP [dm6]	T	C	2.453e^-4	0.778	INTRON Cpr51A & 1 other
3R	20942860	3R_20942860_SNP [dm3] 3R_25117138_SNP [dm6]	T	C	2.454e^-4	0.778	DOWNSTREAM CG31510 INTRON CG31108
3R	25266612	3R_25266612_SNP [dm3] 3R_29440890_SNP [dm6]	G	T	2.455e^-4	0.778	INTRON Ptp99A
2L	2292196	2L_2292196_SNP [dm3] 2L_2292196_SNP [dm6]	C	T	2.465e^-4	0.778	INTERGENIC
3R	13761517	3R_13761517_SNP [dm3] 3R_17935795_SNP [dm6]	G	A	2.469e^-4	0.778	INTRON cpo
2L	17608395	2L_17608395_SNP [dm3] 2L_17608395_SNP [dm6]	G	T	2.476e^-4	0.778	INTERGENIC
3L	17222118	3L_17222118_SNP [dm3] 3L_17229018_SNP [dm6]	A	T	2.476e^-4	0.778	INTRON Rbp6
2R	8174278	2R_8174278_SNP [dm3] 2R_12286773_SNP [dm6]	A	G	2.479e^-4	0.778	INTRON CG42700
2R	14507638	2R_14507638_SNP [dm3] 2R_18620133_SNP [dm6]	T	C	2.489e^-4	0.778	UPSTREAM CG5493 DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14010822	3R_14010822_SNP [dm3] 3R_18185100_SNP [dm6]	A	G	2.503e^-4	0.778	SYNONYMOUS_CODING CG7208 UPSTREAM Arp5
3L	7068544	3L_7068544_SNP [dm3] 3L_7075444_SNP [dm6]	C	T	2.504e^-4	0.778	UPSTREAM CG34030 INTRON CG8641
2L	16332653	2L_16332653_SNP [dm3] 2L_16332653_SNP [dm6]	C	T	2.506e^-4	0.778	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
2L	7016849	2L_7016849_SNP [dm3] 2L_7016849_SNP [dm6]	C	A	2.507e^-4	0.778	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3R	16013084	3R_16013084_DEL [dm3] 3R_20187362_DEL [dm6]	AAA	G	2.509e^-4	0.778	INTERGENIC
2R	8181355	2R_8181355_DEL [dm3] 2R_12293850_DEL [dm6]	AG	A	2.509e^-4	0.778	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16013091	3R_16013091_SNP [dm3] 3R_20187369_SNP [dm6]	T	A	2.516e^-4	0.778	INTERGENIC
2R	8722699	2R_8722699_DEL [dm3] 2R_12835194_DEL [dm6]	AA	A	2.520e^-4	0.778	INTERGENIC
2R	18938650	2R_18938650_SNP [dm3] 2R_23051127_SNP [dm6]	T	C	2.520e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15670929	2R_15670929_SNP [dm3] 2R_19783424_SNP [dm6]	A	T	2.522e^-4	0.778	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
X	15572931	X_15572931_SNP [dm3] X_15678898_SNP [dm6]	C	T	2.526e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14049684	3R_14049684_SNP [dm3] 3R_18223962_SNP [dm6]	C	A	2.529e^-4	0.778	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14459316	2R_14459316_SNP [dm3] 2R_18571811_SNP [dm6]	T	C	2.532e^-4	0.778	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8172994	2R_8172994_DEL [dm3] 2R_12285489_DEL [dm6]	AG	A	2.542e^-4	0.778	UPSTREAM CG42700 INTRON CG42700
2R	14917580	2R_14917580_SNP [dm3] 2R_19030075_SNP [dm6]	G	A	2.542e^-4	0.778	SYNONYMOUS_CODING CG43351 INTRON 5-HT1B
3R	21535361	3R_21535361_SNP [dm3] 3R_25709639_SNP [dm6]	T	A	2.556e^-4	0.778	INTRON LpR2
3L	15288818	3L_15288818_SNP [dm3] 3L_15295718_SNP [dm6]	T	C	2.557e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1491971	3L_1491971_SNP [dm3] 3L_1491971_SNP [dm6]	A	C	2.558e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17861669	2R_17861669_SNP [dm3] 2R_21974164_SNP [dm6]	T	C	2.562e^-4	0.778	INTRON CG9304	TF binding site mE1_TFBS_HSA
3L	12636915	3L_12636915_SNP [dm3] 3L_12643815_SNP [dm6]	C	A	2.568e^-4	0.778	INTRON CR32111	regulatory region REDfly_CRMs
2R	11636346	2R_11636346_DEL [dm3] 2R_15748841_DEL [dm6]	GA	G	2.569e^-4	0.778	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15279042	3R_15279042_SNP [dm3] 3R_19453320_SNP [dm6]	T	A	2.573e^-4	0.778	INTRON CG31221
2R	11736013	2R_11736013_SNP [dm3] 2R_15848508_SNP [dm6]	A	G	2.574e^-4	0.778	SPLICE_SITE_ACCEPTOR tun UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
3R	21004441	3R_21004441_SNP [dm3] 3R_25178719_SNP [dm6]	T	G	2.575e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_twi
3R	21004442	3R_21004442_SNP [dm3] 3R_25178720_SNP [dm6]	G	C	2.575e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_twi
3R	21004449	3R_21004449_INS [dm3] 3R_25178727_INS [dm6]	A	AT	2.575e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_twi
3R	21004450	3R_21004450_INS [dm3] 3R_25178728_INS [dm6]	G	GC	2.575e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_twi
3R	21004452	3R_21004452_DEL [dm3] 3R_25178730_DEL [dm6]	TGA	T	2.575e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_twi
X	7114293	X_7114293_SNP [dm3] X_7220260_SNP [dm6]	G	C	2.583e^-4	0.778	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10602700	2L_10602700_INS [dm3] 2L_10602700_INS [dm6]	T	TT	2.589e^-4	0.778	INTRON Trim9
3L	6630407	3L_6630407_SNP [dm3] 3L_6637307_SNP [dm6]	C	A	2.593e^-4	0.778	INTERGENIC
3L	13598771	3L_13598771_SNP [dm3] 3L_13605671_SNP [dm6]	G	A	2.594e^-4	0.778	INTRON bru-3
3R	20115752	3R_20115752_SNP [dm3] 3R_24290030_SNP [dm6]	T	G	2.594e^-4	0.778	UPSTREAM CG6364 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8182156	2R_8182156_DEL [dm3] 2R_12294651_DEL [dm6]	CCGTGGGC	C	2.603e^-4	0.778	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27677070	3R_27677070_INS [dm3] 3R_31851348_INS [dm6]	T	TT	2.603e^-4	0.778	UTR_3_PRIME heph DOWNSTREAM heph
3R	23938466	3R_23938466_INS [dm3] 3R_28112744_INS [dm6]	G	TTTGC	2.610e^-4	0.778	INTERGENIC
3R	16127502	3R_16127502_SNP [dm3] 3R_20301780_SNP [dm6]	G	A	2.612e^-4	0.778	UTR_3_PRIME cic DOWNSTREAM cic
3R	16066567	3R_16066567_SNP [dm3] 3R_20240845_SNP [dm6]	A	T	2.614e^-4	0.778	INTRON Nlg4
3R	16013099	3R_16013099_SNP [dm3] 3R_20187377_SNP [dm6]	T	A	2.618e^-4	0.778	INTERGENIC
3R	16013100	3R_16013100_SNP [dm3] 3R_20187378_SNP [dm6]	A	T	2.618e^-4	0.778	INTERGENIC
3R	16066570	3R_16066570_SNP [dm3] 3R_20240848_SNP [dm6]	G	T	2.619e^-4	0.778	INTRON Nlg4
3L	22085128	3L_22085128_SNP [dm3] 3L_22092028_SNP [dm6]	A	T	2.623e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16379671	2L_16379671_INS [dm3] 2L_16379671_INS [dm6]	C	CC	2.623e^-4	0.778	INTERGENIC
2L	17015515	2L_17015515_SNP [dm3] 2L_17015515_SNP [dm6]	T	G	2.626e^-4	0.778	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8536361	3L_8536361_SNP [dm3] 3L_8543261_SNP [dm6]	G	C	2.627e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21236935	3R_21236935_SNP [dm3] 3R_25411213_SNP [dm6]	T	A	2.628e^-4	0.778	INTRON Fur1
3R	16013088	3R_16013088_SNP [dm3] 3R_20187366_SNP [dm6]	A	C	2.629e^-4	0.778	INTERGENIC
2R	15507971	2R_15507971_SNP [dm3] 2R_19620466_SNP [dm6]	G	A	2.632e^-4	0.778	INTRON sm
2R	7972353	2R_7972353_DEL [dm3] 2R_12084848_DEL [dm6]	TAAATTGAATT...	T	2.633e^-4	0.778	DOWNSTREAM jeb INTERGENIC
3L	21056245	3L_21056245_SNP [dm3] 3L_21063145_SNP [dm6]	T	C	2.635e^-4	0.778	INTRON siz
3L	4809574	3L_4809574_SNP [dm3] 3L_4809574_SNP [dm6]	A	T	2.638e^-4	0.778	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16900118	X_16900118_SNP [dm3] X_17006085_SNP [dm6]	C	T	2.645e^-4	0.778	INTRON CG45002
3R	23489263	3R_23489263_SNP [dm3] 3R_27663541_SNP [dm6]	C	T	2.646e^-4	0.778	INTRON unc80	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	495599	2L_495599_SNP [dm3] 2L_495599_SNP [dm6]	C	T	2.654e^-4	0.778	INTRON ush
3R	24175221	3R_24175221_SNP [dm3] 3R_28349499_SNP [dm6]	G	T	2.660e^-4	0.778	INTERGENIC
X	21230869	X_21230869_SNP [dm3] X_21359842_SNP [dm6]	T	C	2.662e^-4	0.778	SYNONYMOUS_CODING Sep1	TF binding site mE1_TFBS_cad
X	5333027	X_5333027_SNP [dm3] X_5438994_SNP [dm6]	T	A	2.668e^-4	0.778	INTERGENIC
3L	13307905	3L_13307905_SNP [dm3] 3L_13314805_SNP [dm6]	A	T	2.672e^-4	0.778	INTERGENIC
2R	11722931	2R_11722931_SNP [dm3] 2R_15835426_SNP [dm6]	T	C	2.677e^-4	0.778	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	21236940	3R_21236940_SNP [dm3] 3R_25411218_SNP [dm6]	C	T	2.694e^-4	0.778	INTRON Fur1
3L	13598946	3L_13598946_SNP [dm3] 3L_13605846_SNP [dm6]	C	T	2.702e^-4	0.778	INTRON bru-3
3L	4809610	3L_4809610_SNP [dm3] 3L_4809610_SNP [dm6]	A	G	2.703e^-4	0.778	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8084579	3L_8084579_SNP [dm3] 3L_8091479_SNP [dm6]	G	T	2.705e^-4	0.778	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7623827	2R_7623827_SNP [dm3] 2R_11736322_SNP [dm6]	C	A	2.709e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2L	13972614	2L_13972614_SNP [dm3] 2L_13972614_SNP [dm6]	G	A	2.716e^-4	0.778	DOWNSTREAM NimB5 & 1 other INTRON He
3L	1235182	3L_1235182_SNP [dm3] 3L_1235182_SNP [dm6]	C	T	2.718e^-4	0.778	SYNONYMOUS_CODING CG33966 UPSTREAM CR45747 & 1 other
2L	6819990	2L_6819990_SNP [dm3] 2L_6819990_SNP [dm6]	G	A	2.721e^-4	0.778	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	22901998	3R_22901998_SNP [dm3] 3R_27076276_SNP [dm6]	C	A	2.725e^-4	0.778	INTRON CG14257	TF binding site mE1_TFBS_Trl
X	2710482	X_2710482_SNP [dm3] X_2816449_SNP [dm6]	G	T	2.738e^-4	0.778	INTRON kirre
3R	17582848	3R_17582848_SNP [dm3] 3R_21757126_SNP [dm6]	C	T	2.739e^-4	0.778	SYNONYMOUS_CODING CG31198	TF binding site mE1_TFBS_cad
3L	5590980	3L_5590980_SNP [dm3] 3L_5597880_SNP [dm6]	C	T	2.747e^-4	0.778	DOWNSTREAM CG5150 & 1 other INTERGENIC
3R	15166567	3R_15166567_SNP [dm3] 3R_19340845_SNP [dm6]	C	A	2.749e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	15288821	3L_15288821_SNP [dm3] 3L_15295721_SNP [dm6]	A	G	2.750e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19906209	X_19906209_SNP [dm3] X_20012176_SNP [dm6]	T	A	2.753e^-4	0.778	INTRON Dop2R
3R	17172569	3R_17172569_SNP [dm3] 3R_21346847_SNP [dm6]	C	T	2.759e^-4	0.778	INTRON CG16791
3L	13277558	3L_13277558_SNP [dm3] 3L_13284458_SNP [dm6]	A	T	2.763e^-4	0.778	DOWNSTREAM CR45752 EXON CR43913
3R	12345205	3R_12345205_SNP [dm3] 3R_16519483_SNP [dm6]	A	G	2.768e^-4	0.778	INTRON CG42342
3R	7690061	3R_7690061_SNP [dm3] 3R_11864339_SNP [dm6]	G	A	2.774e^-4	0.778	INTRON CG6959
3R	23938457	3R_23938457_INS [dm3] 3R_28112735_INS [dm6]	A	CAACC	2.774e^-4	0.778	INTERGENIC
2R	6353072	2R_6353072_SNP [dm3] 2R_10465567_SNP [dm6]	A	C	2.779e^-4	0.778	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17101607	2L_17101607_SNP [dm3] 2L_17101607_SNP [dm6]	T	C	2.785e^-4	0.778	INTERGENIC
3R	21004481	3R_21004481_SNP [dm3] 3R_25178759_SNP [dm6]	T	G	2.790e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_twi
3L	3278923	3L_3278923_SNP [dm3] 3L_3278923_SNP [dm6]	A	G	2.790e^-4	0.778	INTERGENIC
X	15107330	X_15107330_SNP [dm3] X_15213297_SNP [dm6]	C	T	2.792e^-4	0.778	INTERGENIC
2L	13873074	2L_13873074_SNP [dm3] 2L_13873074_SNP [dm6]	G	A	2.793e^-4	0.778	INTRON CenG1A
X	12302608	X_12302608_SNP [dm3] X_12408575_SNP [dm6]	T	A	2.794e^-4	0.778	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21236781	3R_21236781_SNP [dm3] 3R_25411059_SNP [dm6]	T	G	2.796e^-4	0.778	INTRON Fur1
2R	14835666	2R_14835666_SNP [dm3] 2R_18948161_SNP [dm6]	T	A	2.798e^-4	0.778	INTRON sano
3R	10638589	3R_10638589_SNP [dm3] 3R_14812867_SNP [dm6]	A	G	2.798e^-4	0.778	INTRON btsz
2R	14085662	2R_14085662_SNP [dm3] 2R_18198157_SNP [dm6]	C	T	2.799e^-4	0.778	INTERGENIC
X	8569839	X_8569839_SNP [dm3] X_8675806_SNP [dm6]	A	T	2.799e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13872611	2L_13872611_SNP [dm3] 2L_13872611_SNP [dm6]	C	A	2.800e^-4	0.778	INTRON CenG1A
3R	21535362	3R_21535362_SNP [dm3] 3R_25709640_SNP [dm6]	T	G	2.801e^-4	0.778	INTRON LpR2
3R	13906238	3R_13906238_SNP [dm3] 3R_18080516_SNP [dm6]	G	A	2.808e^-4	0.778	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6542746	2R_6542746_SNP [dm3] 2R_10655241_SNP [dm6]	C	T	2.819e^-4	0.778	INTERGENIC
3R	13509619	3R_13509619_SNP [dm3] 3R_17683897_SNP [dm6]	T	G	2.823e^-4	0.778	NON_SYNONYMOUS_CODING CG31251 DOWNSTREAM CG7655	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22491186	3R_22491186_SNP [dm3] 3R_26665464_SNP [dm6]	T	A	2.828e^-4	0.778	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
X	16900149	X_16900149_SNP [dm3] X_17006116_SNP [dm6]	A	G	2.838e^-4	0.778	INTRON CG45002
X	14641465	X_14641465_SNP [dm3] X_14747432_SNP [dm6]	A	G	2.847e^-4	0.778	SYNONYMOUS_CODING NetB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7689729	3R_7689729_SNP [dm3] 3R_11864007_SNP [dm6]	G	A	2.848e^-4	0.778	INTRON CG6959
3R	13659717	3R_13659717_SNP [dm3] 3R_17833995_SNP [dm6]	C	T	2.849e^-4	0.778	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	1092192	3L_1092192_SNP [dm3] 3L_1092192_SNP [dm6]	A	C	2.856e^-4	0.778	INTRON bab1	regulatory region REDfly_CRMs
2L	5974598	2L_5974598_SNP [dm3] 2L_5974598_SNP [dm6]	T	C	2.865e^-4	0.778	INTRON chic
3L	1264632	3L_1264632_SNP [dm3] 3L_1264632_SNP [dm6]	T	A	2.866e^-4	0.778	INTRON CG9134
3L	22117297	3L_22117297_DEL [dm3] 3L_22124197_DEL [dm6]	AAA	A	2.867e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6311826	2L_6311826_SNP [dm3] 2L_6311826_SNP [dm6]	G	A	2.869e^-4	0.778	INTRON Ddr
X	17178652	X_17178652_SNP [dm3] X_17284619_SNP [dm6]	G	A	2.873e^-4	0.778	UPSTREAM CG8661 INTRON CG5445
2L	5974609	2L_5974609_SNP [dm3] 2L_5974609_SNP [dm6]	T	C	2.879e^-4	0.778	INTRON chic
3L	3353803	3L_3353803_SNP [dm3] 3L_3353803_SNP [dm6]	T	G	2.881e^-4	0.778	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	15976785	3R_15976785_SNP [dm3] 3R_20151063_SNP [dm6]	A	C	2.893e^-4	0.778	INTERGENIC
X	13272811	X_13272811_SNP [dm3] X_13378778_SNP [dm6]	A	G	2.895e^-4	0.778	SYNONYMOUS_CODING CG1640
3R	13849867	3R_13849867_SNP [dm3] 3R_18024145_SNP [dm6]	C	T	2.896e^-4	0.778	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2L	10960062	2L_10960062_SNP [dm3] 2L_10960062_SNP [dm6]	A	T	2.897e^-4	0.778	INTRON dpr2
3R	9503989	3R_9503989_SNP [dm3] 3R_13678267_SNP [dm6]	A	C	2.912e^-4	0.778	INTRON lkb1
2R	17868413	2R_17868413_SNP [dm3] 2R_21980908_SNP [dm6]	A	T	2.913e^-4	0.778	INTRON Gr58a
2R	17853702	2R_17853702_INS [dm3] 2R_21966197_INS [dm6]	A	AGTG	2.933e^-4	0.778	INTRON ppk9
2L	13973145	2L_13973145_SNP [dm3] 2L_13973145_SNP [dm6]	T	A	2.935e^-4	0.778	UPSTREAM He DOWNSTREAM NimC1 & 1 other INTERGENIC
3R	22998407	3R_22998407_SNP [dm3] 3R_27172685_SNP [dm6]	G	A	2.943e^-4	0.778	UTR_3_PRIME Ser	regulatory region REDfly_CRMs
3R	21004749	3R_21004749_SNP [dm3] 3R_25179027_SNP [dm6]	T	A	2.947e^-4	0.778	INTRON lobo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10831213	3R_10831213_SNP [dm3] 3R_15005491_SNP [dm6]	G	T	2.948e^-4	0.778	UPSTREAM CR45599 INTERGENIC
3R	19920875	3R_19920875_SNP [dm3] 3R_24095153_SNP [dm6]	G	A	2.952e^-4	0.778	INTRON 4EHP
2R	16190867	2R_16190867_SNP [dm3] 2R_20303362_SNP [dm6]	C	G	2.956e^-4	0.778	DOWNSTREAM CR44640 EXON CR44641
2R	8173184	2R_8173184_SNP [dm3] 2R_12285679_SNP [dm6]	T	C	2.957e^-4	0.778	UPSTREAM CG42700 INTRON CG42700
3R	4966712	3R_4966712_SNP [dm3] 3R_9140990_SNP [dm6]	A	G	2.957e^-4	0.778	INTRON pum	TF binding site BDTNP1_TFBS_twi
3R	13411493	3R_13411493_SNP [dm3] 3R_17585771_SNP [dm6]	A	T	2.960e^-4	0.778	INTERGENIC
2R	19360142	2R_19360142_SNP [dm3] 2R_23472619_SNP [dm6]	G	A	2.962e^-4	0.778	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	901593	3L_901593_SNP [dm3] 3L_901593_SNP [dm6]	G	A	2.974e^-4	0.778	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8086246	2L_8086246_SNP [dm3] 2L_8086246_SNP [dm6]	A	T	2.978e^-4	0.778	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1857128	3L_1857128_SNP [dm3] 3L_1857128_SNP [dm6]	A	G	2.978e^-4	0.778	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11301938	2R_11301938_SNP [dm3] 2R_15414433_SNP [dm6]	T	C	2.982e^-4	0.778	INTRON CG43729
3L	9511789	3L_9511789_SNP [dm3] 3L_9518689_SNP [dm6]	T	C	2.984e^-4	0.778	INTRON CG33700
3R	7686942	3R_7686942_SNP [dm3] 3R_11861220_SNP [dm6]	C	T	2.993e^-4	0.778	INTRON CG6959
2R	9853361	2R_9853361_SNP [dm3] 2R_13965856_SNP [dm6]	G	A	2.993e^-4	0.778	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16631781	3L_16631781_SNP [dm3] 3L_16638681_SNP [dm6]	A	G	3.001e^-4	0.778	INTRON Abl
3R	9920806	3R_9920806_SNP [dm3] 3R_14095084_SNP [dm6]	T	C	3.001e^-4	0.778	INTRON CCHa1
3L	8912753	3L_8912753_SNP [dm3] 3L_8919653_SNP [dm6]	T	G	3.003e^-4	0.778	INTRON Tsp66E
3L	7837701	3L_7837701_SNP [dm3] 3L_7844601_SNP [dm6]	G	C	3.008e^-4	0.778	INTRON Pdp1	regulatory region REDfly_CRMs
2R	6538304	2R_6538304_SNP [dm3] 2R_10650799_SNP [dm6]	T	A	3.009e^-4	0.778	DOWNSTREAM CG12934 INTERGENIC
2L	14783149	2L_14783149_SNP [dm3] 2L_14783149_SNP [dm6]	A	C	3.009e^-4	0.778	UPSTREAM CR15280 DOWNSTREAM CG18636 INTERGENIC
2L	12641173	2L_12641173_SNP [dm3] 2L_12641173_SNP [dm6]	T	G	3.009e^-4	0.778	UTR_5_PRIME Ref2
2R	15728153	2R_15728153_SNP [dm3] 2R_19840648_SNP [dm6]	A	G	3.022e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	4115528	2L_4115528_SNP [dm3] 2L_4115528_SNP [dm6]	A	C	3.027e^-4	0.778	UTR_3_PRIME ed	TF binding site BDTNP1_TFBS_da
2L	11390346	2L_11390346_INS [dm3] 2L_11390346_INS [dm6]	C	CATC	3.029e^-4	0.778	EXON CR43681	regulatory region REDfly_CRMs
3R	17871386	3R_17871386_SNP [dm3] 3R_22045664_SNP [dm6]	C	A	3.033e^-4	0.778	INTRON how	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14917589	2R_14917589_SNP [dm3] 2R_19030084_SNP [dm6]	A	G	3.037e^-4	0.778	SYNONYMOUS_CODING CG43351 INTRON 5-HT1B
2R	6204879	2R_6204879_SNP [dm3] 2R_10317374_SNP [dm6]	G	T	3.044e^-4	0.778	SYNONYMOUS_CODING Ndg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18046784	3R_18046784_SNP [dm3] 3R_22221062_SNP [dm6]	C	G	3.045e^-4	0.778	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8771735	3L_8771735_SNP [dm3] 3L_8778635_SNP [dm6]	T	C	3.046e^-4	0.778	INTRON Fhos	TF binding site mE1_TFBS_cad
2L	16868549	2L_16868549_SNP [dm3] 2L_16868549_SNP [dm6]	A	C	3.049e^-4	0.778	UPSTREAM CR31781 INTERGENIC
2R	15978938	2R_15978938_SNP [dm3] 2R_20091433_SNP [dm6]	G	A	3.056e^-4	0.778	DOWNSTREAM CR44633 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16379210	2L_16379210_SNP [dm3] 2L_16379210_SNP [dm6]	A	C	3.066e^-4	0.778	INTERGENIC
3R	25894059	3R_25894059_SNP [dm3] 3R_30068337_SNP [dm6]	C	T	3.075e^-4	0.778	NON_SYNONYMOUS_CODING sima
2L	7822263	2L_7822263_SNP [dm3] 2L_7822263_SNP [dm6]	T	C	3.077e^-4	0.778	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19761106	3R_19761106_SNP [dm3] 3R_23935384_SNP [dm6]	C	G	3.081e^-4	0.778	SYNONYMOUS_CODING CG5854 DOWNSTREAM Gdh	TF binding site mE1_TFBS_sens
3L	5590962	3L_5590962_SNP [dm3] 3L_5597862_SNP [dm6]	T	A	3.096e^-4	0.778	DOWNSTREAM CG5150 & 1 other INTERGENIC
2L	904868	2L_904868_SNP [dm3] 2L_904868_SNP [dm6]	C	T	3.096e^-4	0.778	DOWNSTREAM CR45261 INTERGENIC
X	16900143	X_16900143_SNP [dm3] X_17006110_SNP [dm6]	C	G	3.105e^-4	0.778	INTRON CG45002
3R	23779203	3R_23779203_SNP [dm3] 3R_27953481_SNP [dm6]	T	C	3.105e^-4	0.778	INTRON CG4951	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13973174	2L_13973174_SNP [dm3] 2L_13973174_SNP [dm6]	G	A	3.106e^-4	0.778	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
3L	9788347	3L_9788347_SNP [dm3] 3L_9795247_SNP [dm6]	T	C	3.107e^-4	0.778	INTRON Zasp67
3R	23938472	3R_23938472_SNP [dm3] 3R_28112750_SNP [dm6]	C	A	3.110e^-4	0.778	INTERGENIC
2R	10380488	2R_10380488_SNP [dm3] 2R_14492983_SNP [dm6]	G	A	3.110e^-4	0.778	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10380818	2R_10380818_SNP [dm3] 2R_14493313_SNP [dm6]	A	T	3.110e^-4	0.778	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20860176	X_20860176_SNP [dm3] X_20989149_SNP [dm6]	G	T	3.113e^-4	0.778	INTERGENIC
2L	12519743	2L_12519743_INS [dm3] 2L_12519743_INS [dm6]	A	ATGTAA	3.115e^-4	0.778	INTRON bun	TF binding site mE1_TFBS_bab1
3L	9590012	3L_9590012_SNP [dm3] 3L_9596912_SNP [dm6]	T	C	3.115e^-4	0.778	UPSTREAM CG14177 DOWNSTREAM CG42673 INTERGENIC
2R	14019538	2R_14019538_SNP [dm3] 2R_18132033_SNP [dm6]	G	T	3.116e^-4	0.778	NON_SYNONYMOUS_CODING Hsf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2377752	X_2377752_SNP [dm3] X_2483719_SNP [dm6]	A	G	3.121e^-4	0.778	SYNONYMOUS_CODING trol
3L	5606611	3L_5606611_SNP [dm3] 3L_5613511_SNP [dm6]	C	A	3.122e^-4	0.778	INTERGENIC
3R	7738278	3R_7738278_INS [dm3] 3R_11912556_INS [dm6]	C	CTG	3.129e^-4	0.778	INTRON Cad87A
2R	10615845	2R_10615845_SNP [dm3] 2R_14728340_SNP [dm6]	T	A	3.131e^-4	0.778	INTERGENIC
3L	16352423	3L_16352423_DEL [dm3] 3L_16359323_DEL [dm6]	AA	A	3.136e^-4	0.778	UTR_5_PRIME CG45057 INTRON CG45057	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
X	2161724	X_2161724_SNP [dm3] X_2267691_SNP [dm6]	G	A	3.137e^-4	0.778	INTRON CG2924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8273504	2R_8273504_SNP [dm3] 2R_12385999_SNP [dm6]	A	T	3.137e^-4	0.778	UPSTREAM Cpr49Ac INTERGENIC
2L	16374119	2L_16374119_SNP [dm3] 2L_16374119_SNP [dm6]	A	G	3.138e^-4	0.778	INTERGENIC
2R	17452408	2R_17452408_SNP [dm3] 2R_21564903_SNP [dm6]	C	A	3.139e^-4	0.778	INTRON CG10440
3R	13715819	3R_13715819_SNP [dm3] 3R_17890097_SNP [dm6]	C	G	3.141e^-4	0.778	INTRON Rim
X	20848642	X_20848642_SNP [dm3] X_20977615_SNP [dm6]	T	C	3.142e^-4	0.778	UPSTREAM CG44426 INTERGENIC
3L	9788348	3L_9788348_SNP [dm3] 3L_9795248_SNP [dm6]	G	A	3.147e^-4	0.778	INTRON Zasp67
3L	9788372	3L_9788372_SNP [dm3] 3L_9795272_SNP [dm6]	G	A	3.147e^-4	0.778	INTRON Zasp67
3L	13017908	3L_13017908_SNP [dm3] 3L_13024808_SNP [dm6]	C	G	3.160e^-4	0.778	UTR_3_PRIME Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad
3L	12286337	3L_12286337_SNP [dm3] 3L_12293237_SNP [dm6]	G	A	3.165e^-4	0.778	INTRON CG4328	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22705711	3R_22705711_INS [dm3] 3R_26879989_INS [dm6]	T	TGAGCAGTAGT...	3.168e^-4	0.778	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
X	12006388	X_12006388_SNP [dm3] X_12112355_SNP [dm6]	T	C	3.168e^-4	0.778	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12373994	2L_12373994_SNP [dm3] 2L_12373994_SNP [dm6]	C	G	3.172e^-4	0.778	NON_SYNONYMOUS_CODING bru-2 INTRON bru-2
X	20860295	X_20860295_DEL [dm3] X_20989268_DEL [dm6]	ACAAGCG	T	3.176e^-4	0.778	INTERGENIC
3R	12975091	3R_12975091_SNP [dm3] 3R_17149369_SNP [dm6]	T	C	3.180e^-4	0.778	UTR_5_PRIME m-cup UPSTREAM Det	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14680461	3R_14680461_SNP [dm3] 3R_18854739_SNP [dm6]	T	A	3.181e^-4	0.778	INTERGENIC
3R	25727467	3R_25727467_SNP [dm3] 3R_29901745_SNP [dm6]	A	T	3.182e^-4	0.778	INTRON CG31038
2L	13841632	2L_13841632_SNP [dm3] 2L_13841632_SNP [dm6]	A	G	3.185e^-4	0.778	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	9722223	3R_9722223_SNP [dm3] 3R_13896501_SNP [dm6]	G	A	3.187e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	8252819	2R_8252819_SNP [dm3] 2R_12365314_SNP [dm6]	T	C	3.196e^-4	0.778	EXON CR33013	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10946021	2L_10946021_SNP [dm3] 2L_10946021_SNP [dm6]	A	G	3.202e^-4	0.778	INTRON dpr2
3R	23042384	3R_23042384_SNP [dm3] 3R_27216662_SNP [dm6]	G	C	3.206e^-4	0.778	EXON CR34006
2L	17015499	2L_17015499_SNP [dm3] 2L_17015499_SNP [dm6]	G	A	3.213e^-4	0.778	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
3L	9788433	3L_9788433_SNP [dm3] 3L_9795333_SNP [dm6]	C	T	3.218e^-4	0.778	INTRON Zasp67
3L	11669887	3L_11669887_SNP [dm3] 3L_11676787_SNP [dm6]	A	G	3.221e^-4	0.778	INTRON CG32085
X	21232198	X_21232198_SNP [dm3] X_21361171_SNP [dm6]	C	T	3.223e^-4	0.778	UTR_3_PRIME Sep1
2R	17596631	2R_17596631_SNP [dm3] 2R_21709126_SNP [dm6]	T	C	3.227e^-4	0.778	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	9943365	3L_9943365_SNP [dm3] 3L_9950265_SNP [dm6]	C	A	3.234e^-4	0.778	INTRON CG34356
3R	15162777	3R_15162777_SNP [dm3] 3R_19337055_SNP [dm6]	G	A	3.235e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_cad
X	11952148	X_11952148_SNP [dm3] X_12058115_SNP [dm6]	C	T	3.235e^-4	0.778	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo
2L	7822326	2L_7822326_SNP [dm3] 2L_7822326_SNP [dm6]	G	A	3.241e^-4	0.778	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl
2R	16950682	2R_16950682_SNP [dm3] 2R_21063177_SNP [dm6]	T	A	3.241e^-4	0.778	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
3R	16178615	3R_16178615_SNP [dm3] 3R_20352893_SNP [dm6]	C	T	3.242e^-4	0.778	INTERGENIC
3L	10935975	3L_10935975_SNP [dm3] 3L_10942875_SNP [dm6]	A	G	3.250e^-4	0.778	INTERGENIC
2R	17453444	2R_17453444_SNP [dm3] 2R_21565939_SNP [dm6]	G	A	3.251e^-4	0.778	INTRON CG10440
2L	12374319	2L_12374319_SNP [dm3] 2L_12374319_SNP [dm6]	T	A	3.269e^-4	0.778	INTRON bru-2
X	6479151	X_6479151_SNP [dm3] X_6585118_SNP [dm6]	T	C	3.270e^-4	0.778	UTR_3_PRIME CG34417 INTRON CG34417
3R	1255446	3R_1255446_SNP [dm3] 3R_5429724_SNP [dm6]	A	C	3.270e^-4	0.778	INTRON CG14669
2R	10406280	2R_10406280_SNP [dm3] 2R_14518775_SNP [dm6]	A	T	3.272e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13948355	2L_13948355_SNP [dm3] 2L_13948355_SNP [dm6]	A	T	3.274e^-4	0.778	UPSTREAM CG16884 INTRON Ance-3
2L	11464338	2L_11464338_SNP [dm3] 2L_11464338_SNP [dm6]	A	G	3.275e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8186571	2R_8186571_SNP [dm3] 2R_12299066_SNP [dm6]	G	T	3.278e^-4	0.778	NON_SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3R	16692613	3R_16692613_DEL [dm3] 3R_20866891_DEL [dm6]	CTT	C	3.283e^-4	0.778	UPSTREAM CG3822 INTERGENIC
X	16900231	X_16900231_SNP [dm3] X_17006198_SNP [dm6]	A	T	3.283e^-4	0.778	INTRON CG45002
2R	12625894	2R_12625894_SNP [dm3] 2R_16738389_SNP [dm6]	C	A	3.286e^-4	0.778	UPSTREAM CG43104 DOWNSTREAM CR44464 INTERGENIC
X	11172466	X_11172466_SNP [dm3] X_11278433_SNP [dm6]	C	T	3.288e^-4	0.778	INTRON CG44422
3L	3526102	3L_3526102_SNP [dm3] 3L_3526102_SNP [dm6]	C	T	3.288e^-4	0.778	INTRON Eip63E
X	17178626	X_17178626_SNP [dm3] X_17284593_SNP [dm6]	T	C	3.294e^-4	0.778	UPSTREAM CG8661 INTRON CG5445
3R	20865557	3R_20865557_SNP [dm3] 3R_25039835_SNP [dm6]	T	C	3.295e^-4	0.778	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	3710938	2L_3710938_SNP [dm3] 2L_3710938_SNP [dm6]	G	A	3.296e^-4	0.778	SYNONYMOUS_CODING cutlet DOWNSTREAM CG31955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15806186	2L_15806186_SNP [dm3] 2L_15806186_SNP [dm6]	G	A	3.296e^-4	0.778	DOWNSTREAM CR44602 INTERGENIC
3R	22705800	3R_22705800_SNP [dm3] 3R_26880078_SNP [dm6]	T	C	3.300e^-4	0.778	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3L	1491932	3L_1491932_SNP [dm3] 3L_1491932_SNP [dm6]	C	T	3.302e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21027171	X_21027171_SNP [dm3] X_21156144_SNP [dm6]	G	A	3.302e^-4	0.778	DOWNSTREAM CR32511 EXON CR45499
3L	9944262	3L_9944262_SNP [dm3] 3L_9951162_SNP [dm6]	T	G	3.307e^-4	0.778	INTRON CG34356
2L	5968269	2L_5968269_SNP [dm3] 2L_5968269_SNP [dm6]	C	T	3.310e^-4	0.778	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5968503	2L_5968503_SNP [dm3] 2L_5968503_SNP [dm6]	A	T	3.310e^-4	0.778	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9900668	3R_9900668_SNP [dm3] 3R_14074946_SNP [dm6]	G	C	3.315e^-4	0.778	INTRON foxo
3L	1491941	3L_1491941_SNP [dm3] 3L_1491941_SNP [dm6]	G	A	3.317e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	17178420	X_17178420_SNP [dm3] X_17284387_SNP [dm6]	G	A	3.324e^-4	0.778	INTRON CG5445 & 1 other
2R	17867364	2R_17867364_SNP [dm3] 2R_21979859_SNP [dm6]	A	T	3.332e^-4	0.778	UPSTREAM Gr58a & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	9861597	2L_9861597_SNP [dm3] 2L_9861597_SNP [dm6]	C	G	3.333e^-4	0.778	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA
3R	14573498	3R_14573498_SNP [dm3] 3R_18747776_SNP [dm6]	G	A	3.343e^-4	0.778	SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16185252	3R_16185252_SNP [dm3] 3R_20359530_SNP [dm6]	G	A	3.343e^-4	0.778	UPSTREAM MtnC EXON CR45023
2L	20404781	2L_20404781_SNP [dm3] 2L_20404781_SNP [dm6]	T	A	3.348e^-4	0.778	INTRON CG10947
2L	495614	2L_495614_SNP [dm3] 2L_495614_SNP [dm6]	C	T	3.349e^-4	0.778	INTRON ush
2L	7023977	2L_7023977_SNP [dm3] 2L_7023977_SNP [dm6]	C	A	3.350e^-4	0.778	UPSTREAM ade3 DOWNSTREAM CG31908 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15670814	2R_15670814_DEL [dm3] 2R_19783309_DEL [dm6]	TAGAATGG	T	3.356e^-4	0.778	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
3R	19674466	3R_19674466_SNP [dm3] 3R_23848744_SNP [dm6]	G	A	3.356e^-4	0.778	INTRON CG34355	TF binding site mE1_TFBS_cad
2R	16896270	2R_16896270_SNP [dm3] 2R_21008765_SNP [dm6]	C	G	3.358e^-4	0.778	SYNONYMOUS_CODING CG30291 DOWNSTREAM grau	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10905611	2L_10905611_SNP [dm3] 2L_10905611_SNP [dm6]	G	A	3.376e^-4	0.778	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	17635247	3L_17635247_DEL [dm3] 3L_17642147_DEL [dm6]	GAG	G	3.379e^-4	0.778	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2654033	2L_2654033_SNP [dm3] 2L_2654033_SNP [dm6]	C	T	3.379e^-4	0.778	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2L	17263310	2L_17263310_DEL [dm3] 2L_17263310_DEL [dm6]	TT	T	3.383e^-4	0.778	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3R	25727498	3R_25727498_SNP [dm3] 3R_29901776_SNP [dm6]	A	G	3.384e^-4	0.778	INTRON CG31038
2L	4888091	2L_4888091_SNP [dm3] 2L_4888091_SNP [dm6]	A	G	3.387e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4888093	2L_4888093_DEL [dm3] 2L_4888093_DEL [dm6]	AT	A	3.387e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20102075	3R_20102075_SNP [dm3] 3R_24276353_SNP [dm6]	A	G	3.388e^-4	0.778	UTR_5_PRIME Orct UPSTREAM Orct DOWNSTREAM Orct2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10145256	3R_10145256_SNP [dm3] 3R_14319534_SNP [dm6]	T	C	3.392e^-4	0.778	UTR_3_PRIME pr-set7 DOWNSTREAM Afti
X	6262624	X_6262624_SNP [dm3] X_6368591_SNP [dm6]	G	A	3.396e^-4	0.778	SYNONYMOUS_CODING Marf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12873309	2R_12873309_SNP [dm3] 2R_16985804_SNP [dm6]	A	G	3.401e^-4	0.778	INTRON Cbp53E
2R	16597279	2R_16597279_SNP [dm3] 2R_20709774_SNP [dm6]	G	C	3.405e^-4	0.778	INTRON dpr
2R	14061629	2R_14061629_SNP [dm3] 2R_18174124_SNP [dm6]	G	C	3.406e^-4	0.778	NON_SYNONYMOUS_CODING CG10916 DOWNSTREAM CR45315	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26649571	3R_26649571_SNP [dm3] 3R_30823849_SNP [dm6]	T	C	3.406e^-4	0.778	INTRON cindr
2L	10659215	2L_10659215_SNP [dm3] 2L_10659215_SNP [dm6]	T	C	3.409e^-4	0.778	DOWNSTREAM CG45690 INTERGENIC
2L	12374318	2L_12374318_SNP [dm3] 2L_12374318_SNP [dm6]	C	T	3.412e^-4	0.778	INTRON bru-2
2L	5545551	2L_5545551_SNP [dm3] 2L_5545551_SNP [dm6]	A	C	3.414e^-4	0.778	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	13049310	3L_13049310_SNP [dm3] 3L_13056210_SNP [dm6]	T	G	3.419e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	5025923	2L_5025923_SNP [dm3] 2L_5025923_SNP [dm6]	G	A	3.420e^-4	0.778	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2217944	3L_2217944_SNP [dm3] 3L_2217944_SNP [dm6]	A	G	3.423e^-4	0.778	INTERGENIC
3L	12052540	3L_12052540_SNP [dm3] 3L_12059440_SNP [dm6]	G	T	3.425e^-4	0.778	INTRON rols
3R	23340472	3R_23340472_SNP [dm3] 3R_27514750_SNP [dm6]	T	C	3.429e^-4	0.778	INTERGENIC
3R	25706927	3R_25706927_SNP [dm3] 3R_29881205_SNP [dm6]	A	C	3.435e^-4	0.778	INTRON CG31038
3R	16105734	3R_16105734_SNP [dm3] 3R_20280012_SNP [dm6]	T	A	3.435e^-4	0.778	INTRON cic
2L	12640103	2L_12640103_SNP [dm3] 2L_12640103_SNP [dm6]	T	A	3.435e^-4	0.778	INTRON Ref2
2L	15914696	2L_15914696_SNP [dm3] 2L_15914696_SNP [dm6]	C	T	3.436e^-4	0.778	INTRON beat-Ib
3R	19674638	3R_19674638_SNP [dm3] 3R_23848916_SNP [dm6]	T	C	3.440e^-4	0.778	SPLICE_SITE_REGION CG34355 INTRON CG34355
3R	12925512	3R_12925512_SNP [dm3] 3R_17099790_SNP [dm6]	G	A	3.442e^-4	0.778	UPSTREAM cher INTRON cher
2R	8272079	2R_8272079_INS [dm3] 2R_12384574_INS [dm6]	C	CCG	3.446e^-4	0.778	DOWNSTREAM CG8501 INTERGENIC
2L	17308877	2L_17308877_SNP [dm3] 2L_17308877_SNP [dm6]	C	G	3.450e^-4	0.778	INTERGENIC
2R	11835322	2R_11835322_SNP [dm3] 2R_15947817_SNP [dm6]	T	A	3.453e^-4	0.778	DOWNSTREAM Cyp4aa1 INTRON Strn-Mlck
2L	15787090	2L_15787090_SNP [dm3] 2L_15787090_SNP [dm6]	G	T	3.457e^-4	0.778	NON_SYNONYMOUS_CODING CG18109
2R	13419768	2R_13419768_SNP [dm3] 2R_17532263_SNP [dm6]	G	T	3.465e^-4	0.778	INTRON Patronin	TF binding site mE1_TFBS_sens
2R	8171902	2R_8171902_SNP [dm3] 2R_12284397_SNP [dm6]	T	G	3.467e^-4	0.778	INTRON CG42700
X	18566682	X_18566682_SNP [dm3] X_18672649_SNP [dm6]	T	C	3.471e^-4	0.778	INTERGENIC
3L	9788434	3L_9788434_SNP [dm3] 3L_9795334_SNP [dm6]	C	T	3.485e^-4	0.778	INTRON Zasp67
2R	8182054	2R_8182054_SNP [dm3] 2R_12294549_SNP [dm6]	A	C	3.487e^-4	0.778	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16939959	3R_16939959_SNP [dm3] 3R_21114237_SNP [dm6]	T	G	3.491e^-4	0.778	INTRON Rab11
3R	18373289	3R_18373289_SNP [dm3] 3R_22547567_SNP [dm6]	C	A	3.496e^-4	0.778	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12169499	3R_12169499_SNP [dm3] 3R_16343777_SNP [dm6]	T	C	3.502e^-4	0.778	SYNONYMOUS_CODING pad	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5462616	X_5462616_SNP [dm3] X_5568583_SNP [dm6]	G	T	3.510e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	9581583	3R_9581583_DEL [dm3] 3R_13755861_DEL [dm6]	TGCT	T	3.517e^-4	0.778	UTR_3_PRIME CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad
2L	3236853	2L_3236853_SNP [dm3] 2L_3236853_SNP [dm6]	G	A	3.520e^-4	0.778	INTERGENIC
2R	19618202	2R_19618202_SNP [dm3] 2R_23730679_SNP [dm6]	C	T	3.522e^-4	0.778	INTRON Sesn
2L	17089941	2L_17089941_SNP [dm3] 2L_17089941_SNP [dm6]	A	T	3.524e^-4	0.778	DOWNSTREAM CG12620 INTERGENIC
2L	5732069	2L_5732069_SNP [dm3] 2L_5732069_SNP [dm6]	T	A	3.528e^-4	0.778	INTRON CG11030	TF binding site mE1_TFBS_HSA
2R	19961337	2R_19961337_SNP [dm3] 2R_24073814_SNP [dm6]	A	C	3.531e^-4	0.778	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
2R	14450646	2R_14450646_SNP [dm3] 2R_18563141_SNP [dm6]	A	G	3.532e^-4	0.778	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25256205	3R_25256205_SNP [dm3] 3R_29430483_SNP [dm6]	G	A	3.532e^-4	0.778	INTRON Ptp99A
2L	17015518	2L_17015518_SNP [dm3] 2L_17015518_SNP [dm6]	C	A	3.533e^-4	0.778	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
X	20848088	X_20848088_SNP [dm3] X_20977061_SNP [dm6]	G	A	3.541e^-4	0.778	INTERGENIC
2R	17453445	2R_17453445_SNP [dm3] 2R_21565940_SNP [dm6]	T	G	3.543e^-4	0.778	INTRON CG10440
2R	6360726	2R_6360726_SNP [dm3] 2R_10473221_SNP [dm6]	A	C	3.548e^-4	0.778	INTRON whd
2L	12761999	2L_12761999_SNP [dm3] 2L_12761999_SNP [dm6]	A	T	3.555e^-4	0.778	UPSTREAM CG15483 INTERGENIC
2R	18301380	2R_18301380_SNP [dm3] 2R_22413875_SNP [dm6]	T	C	3.557e^-4	0.778	UTR_3_PRIME qkr58E-1 INTRON qkr58E-1	TF binding site BDTNP1_TFBS_z
2R	10401125	2R_10401125_SNP [dm3] 2R_14513620_SNP [dm6]	A	C	3.558e^-4	0.778	UPSTREAM CG30197 INTRON Cpr51A
2R	19395283	2R_19395283_SNP [dm3] 2R_23507760_SNP [dm6]	G	C	3.558e^-4	0.778	EXON CR43794
3R	23774365	3R_23774365_SNP [dm3] 3R_27948643_SNP [dm6]	C	T	3.558e^-4	0.778	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	1114929	2L_1114929_SNP [dm3] 2L_1114929_SNP [dm6]	G	A	3.562e^-4	0.778	UTR_3_PRIME Pino DOWNSTREAM CG14340
2R	8186574	2R_8186574_SNP [dm3] 2R_12299069_SNP [dm6]	C	G	3.563e^-4	0.778	NON_SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3R	16301485	3R_16301485_SNP [dm3] 3R_20475763_SNP [dm6]	T	A	3.567e^-4	0.778	INTRON Gfrl
2L	4888015	2L_4888015_SNP [dm3] 2L_4888015_SNP [dm6]	G	T	3.571e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10401758	2R_10401758_SNP [dm3] 2R_14514253_SNP [dm6]	C	T	3.577e^-4	0.778	INTRON Cpr51A & 1 other
2L	10659248	2L_10659248_SNP [dm3] 2L_10659248_SNP [dm6]	T	C	3.583e^-4	0.778	DOWNSTREAM CG45690 INTERGENIC
2L	8086173	2L_8086173_SNP [dm3] 2L_8086173_SNP [dm6]	T	C	3.584e^-4	0.778	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10043922	2L_10043922_INS [dm3] 2L_10043922_INS [dm6]	C	CTACCATTC	3.586e^-4	0.778	INTERGENIC
X	16715572	X_16715572_SNP [dm3] X_16821539_SNP [dm6]	T	C	3.593e^-4	0.778	INTRON CG4829
3L	9023741	3L_9023741_SNP [dm3] 3L_9030641_SNP [dm6]	A	G	3.607e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16950492	2R_16950492_SNP [dm3] 2R_21062987_SNP [dm6]	T	A	3.608e^-4	0.778	SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
X	10548444	X_10548444_SNP [dm3] X_10654411_SNP [dm6]	C	T	3.608e^-4	0.778	INTRON X11Lbeta
3R	12209459	3R_12209459_SNP [dm3] 3R_16383737_SNP [dm6]	G	A	3.616e^-4	0.778	INTRON ss	regulatory region REDfly_CRMs
3L	13546100	3L_13546100_SNP [dm3] 3L_13553000_SNP [dm6]	T	C	3.628e^-4	0.778	INTRON bru-3
3R	21719520	3R_21719520_SNP [dm3] 3R_25893798_SNP [dm6]	C	A	3.631e^-4	0.778	NON_SYNONYMOUS_CODING CG5913 DOWNSTREAM Lnk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18587275	2L_18587275_SNP [dm3] 2L_18587275_SNP [dm6]	T	G	3.631e^-4	0.778	INTRON Pde11
X	17178722	X_17178722_SNP [dm3] X_17284689_SNP [dm6]	T	A	3.632e^-4	0.778	UPSTREAM CG8661 INTRON CG5445
3R	16013117	3R_16013117_SNP [dm3] 3R_20187395_SNP [dm6]	G	T	3.632e^-4	0.778	INTERGENIC
X	10088575	X_10088575_SNP [dm3] X_10194542_SNP [dm6]	C	G	3.634e^-4	0.778	UTR_3_PRIME CG43902 INTRON CR44894
2R	9827900	2R_9827900_SNP [dm3] 2R_13940395_SNP [dm6]	A	G	3.638e^-4	0.778	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17917170	2R_17917170_SNP [dm3] 2R_22029665_SNP [dm6]	T	G	3.640e^-4	0.778	INTRON CG34370
3R	14680471	3R_14680471_SNP [dm3] 3R_18854749_SNP [dm6]	G	C	3.643e^-4	0.778	INTERGENIC
3L	6239814	3L_6239814_SNP [dm3] 3L_6246714_SNP [dm6]	T	C	3.644e^-4	0.778	NON_SYNONYMOUS_CODING Best2 UPSTREAM Mdr65
2L	9742136	2L_9742136_SNP [dm3] 2L_9742136_SNP [dm6]	C	T	3.646e^-4	0.778	INTRON Nckx30C
3L	12933381	3L_12933381_SNP [dm3] 3L_12940281_SNP [dm6]	A	G	3.646e^-4	0.778	INTERGENIC
3R	16013108	3R_16013108_MNP [dm3] 3R_20187386_MNP [dm6]	TGTC	AAAG	3.651e^-4	0.778	INTERGENIC
3L	15537436	3L_15537436_SNP [dm3] 3L_15544336_SNP [dm6]	T	C	3.652e^-4	0.778	INTRON CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12155789	X_12155789_SNP [dm3] X_12261756_SNP [dm6]	G	A	3.655e^-4	0.778	INTRON Ten-a
2L	17249002	2L_17249002_SNP [dm3] 2L_17249002_SNP [dm6]	T	C	3.657e^-4	0.778	INTRON beat-IIIc
2R	8270043	2R_8270043_SNP [dm3] 2R_12382538_SNP [dm6]	A	C	3.661e^-4	0.778	UPSTREAM CG8501 INTERGENIC
2R	16597500	2R_16597500_SNP [dm3] 2R_20709995_SNP [dm6]	G	C	3.662e^-4	0.778	INTRON dpr
3L	12468660	3L_12468660_SNP [dm3] 3L_12475560_SNP [dm6]	G	A	3.669e^-4	0.778	INTRON CG10663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12664342	3R_12664342_SNP [dm3] 3R_16838620_SNP [dm6]	A	T	3.671e^-4	0.778	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8171836	2R_8171836_SNP [dm3] 2R_12284331_SNP [dm6]	C	T	3.675e^-4	0.778	INTRON CG42700
2L	14203753	2L_14203753_SNP [dm3] 2L_14203753_SNP [dm6]	C	T	3.679e^-4	0.778	INTRON Dyrk2
2L	4238687	2L_4238687_SNP [dm3] 2L_4238687_SNP [dm6]	G	A	3.680e^-4	0.778	INTERGENIC
2R	6981915	2R_6981915_SNP [dm3] 2R_11094410_SNP [dm6]	G	C	3.686e^-4	0.778	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1721961	3L_1721961_SNP [dm3] 3L_1721961_SNP [dm6]	T	C	3.688e^-4	0.778	SYNONYMOUS_CODING CG18171 INTRON drpr
2L	12374310	2L_12374310_INS [dm3] 2L_12374310_INS [dm6]	T	TTTCATTAA	3.690e^-4	0.778	INTRON bru-2
2L	12374314	2L_12374314_SNP [dm3] 2L_12374314_SNP [dm6]	T	A	3.690e^-4	0.778	INTRON bru-2
2L	12374315	2L_12374315_SNP [dm3] 2L_12374315_SNP [dm6]	A	G	3.690e^-4	0.778	INTRON bru-2
2L	1146597	2L_1146597_SNP [dm3] 2L_1146597_SNP [dm6]	T	G	3.692e^-4	0.778	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1491933	3L_1491933_SNP [dm3] 3L_1491933_SNP [dm6]	A	G	3.692e^-4	0.778	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19508858	2L_19508858_SNP [dm3] 2L_19508858_SNP [dm6]	C	T	3.692e^-4	0.778	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	7822300	2L_7822300_SNP [dm3] 2L_7822300_SNP [dm6]	C	G	3.705e^-4	0.778	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl
2R	15731403	2R_15731403_SNP [dm3] 2R_19843898_SNP [dm6]	T	A	3.707e^-4	0.778	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	17868437	2R_17868437_SNP [dm3] 2R_21980932_SNP [dm6]	C	T	3.709e^-4	0.778	SPLICE_SITE_REGION Gr58a SYNONYMOUS_CODING Gr58a
3R	9503978	3R_9503978_SNP [dm3] 3R_13678256_SNP [dm6]	G	T	3.710e^-4	0.778	INTRON lkb1
2R	17865573	2R_17865573_SNP [dm3] 2R_21978068_SNP [dm6]	A	G	3.721e^-4	0.78	DOWNSTREAM Gr58b & 1 other INTERGENIC
X	4959699	X_4959699_SNP [dm3] X_5065666_SNP [dm6]	C	T	3.727e^-4	0.78	SYNONYMOUS_CODING ovo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18510008	2L_18510008_SNP [dm3] 2L_18510008_SNP [dm6]	T	G	3.736e^-4	0.78	INTRON CG10178
2R	15656531	2R_15656531_SNP [dm3] 2R_19769026_SNP [dm6]	T	C	3.737e^-4	0.78	DOWNSTREAM Or56a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15475588	3R_15475588_SNP [dm3] 3R_19649866_SNP [dm6]	C	A	3.751e^-4	0.781	SYNONYMOUS_CODING CG31220	TF binding site mE1_TFBS_sens
2R	14653822	2R_14653822_SNP [dm3] 2R_18766317_SNP [dm6]	T	C	3.754e^-4	0.781	UPSTREAM Mctp INTRON Mctp
2L	12759179	2L_12759179_SNP [dm3] 2L_12759179_SNP [dm6]	C	T	3.758e^-4	0.781	INTERGENIC
3R	24186791	3R_24186791_SNP [dm3] 3R_28361069_SNP [dm6]	A	G	3.766e^-4	0.781	INTERGENIC
X	8569849	X_8569849_SNP [dm3] X_8675816_SNP [dm6]	C	G	3.769e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4046384	2L_4046384_SNP [dm3] 2L_4046384_SNP [dm6]	G	A	3.778e^-4	0.781	INTRON ed	TF binding site mE1_TFBS_HSA
3R	19760836	3R_19760836_SNP [dm3] 3R_23935114_SNP [dm6]	T	G	3.778e^-4	0.781	SYNONYMOUS_CODING CG5854 DOWNSTREAM Gdh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3861396	X_3861396_SNP [dm3] X_3967363_SNP [dm6]	A	T	3.786e^-4	0.781	INTRON CG6428
3L	393293	3L_393293_SNP [dm3] 3L_393293_SNP [dm6]	A	T	3.788e^-4	0.781	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
3R	21535358	3R_21535358_SNP [dm3] 3R_25709636_SNP [dm6]	C	T	3.796e^-4	0.781	INTRON LpR2
3R	16898463	3R_16898463_SNP [dm3] 3R_21072741_SNP [dm6]	G	A	3.801e^-4	0.781	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1688301	2L_1688301_SNP [dm3] 2L_1688301_SNP [dm6]	C	T	3.806e^-4	0.781	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6761523	2L_6761523_SNP [dm3] 2L_6761523_SNP [dm6]	G	A	3.812e^-4	0.781	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24305696	3R_24305696_SNP [dm3] 3R_28479974_SNP [dm6]	T	C	3.813e^-4	0.781	INTERGENIC
X	20859266	X_20859266_SNP [dm3] X_20988239_SNP [dm6]	A	T	3.814e^-4	0.781	INTERGENIC
2R	8181391	2R_8181391_SNP [dm3] 2R_12293886_SNP [dm6]	A	G	3.816e^-4	0.781	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23388566	3R_23388566_SNP [dm3] 3R_27562844_SNP [dm6]	C	T	3.820e^-4	0.781	UTR_3_PRIME wdb
2R	8190945	2R_8190945_SNP [dm3] 2R_12303440_SNP [dm6]	C	T	3.820e^-4	0.781	UTR_3_PRIME SIP2 INTRON SIP2
3R	22735969	3R_22735969_SNP [dm3] 3R_26910247_SNP [dm6]	G	A	3.821e^-4	0.781	NON_SYNONYMOUS_CODING T48 DOWNSTREAM Ets97D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16523248	3R_16523248_SNP [dm3] 3R_20697526_SNP [dm6]	A	C	3.835e^-4	0.782	INTRON Oamb
3R	15166705	3R_15166705_SNP [dm3] 3R_19340983_SNP [dm6]	C	T	3.843e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	19221238	3L_19221238_SNP [dm3] 3L_19228138_SNP [dm6]	C	G	3.843e^-4	0.782	UPSTREAM CR43893 INTRON fz2
2R	6356822	2R_6356822_SNP [dm3] 2R_10469317_SNP [dm6]	C	T	3.844e^-4	0.782	SYNONYMOUS_CODING CG11777 UPSTREAM Caf1-105 DOWNSTREAM whd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8165014	2R_8165014_DEL [dm3] 2R_12277509_DEL [dm6]	CT	C	3.855e^-4	0.782	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	16523252	3R_16523252_SNP [dm3] 3R_20697530_SNP [dm6]	G	T	3.856e^-4	0.782	INTRON Oamb
3R	20131995	3R_20131995_SNP [dm3] 3R_24306273_SNP [dm6]	T	C	3.858e^-4	0.782	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13735045	X_13735045_SNP [dm3] X_13841012_SNP [dm6]	G	A	3.858e^-4	0.782	INTRON AMPdeam
3R	23822240	3R_23822240_SNP [dm3] 3R_27996518_SNP [dm6]	T	A	3.885e^-4	0.787	INTERGENIC
2R	14015164	2R_14015164_SNP [dm3] 2R_18127659_SNP [dm6]	G	C	3.900e^-4	0.787	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	11291658	2R_11291658_SNP [dm3] 2R_15404153_SNP [dm6]	A	C	3.903e^-4	0.787	UPSTREAM CR45020 INTRON CG43729
2R	18287487	2R_18287487_SNP [dm3] 2R_22399982_SNP [dm6]	T	C	3.908e^-4	0.787	INTRON babos	TF binding site BDTNP1_TFBS_dl
2R	8214115	2R_8214115_SNP [dm3] 2R_12326610_SNP [dm6]	C	T	3.912e^-4	0.787	UTR_5_PRIME garz UPSTREAM CG8841	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1831524	2L_1831524_SNP [dm3] 2L_1831524_SNP [dm6]	T	C	3.916e^-4	0.787	DOWNSTREAM c-cup & 1 other INTERGENIC
2L	17015521	2L_17015521_SNP [dm3] 2L_17015521_SNP [dm6]	T	A	3.916e^-4	0.787	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	17491299	2L_17491299_SNP [dm3] 2L_17491299_SNP [dm6]	G	A	3.919e^-4	0.787	INTRON qua
2R	5654709	2R_5654709_SNP [dm3] 2R_9767204_SNP [dm6]	C	A	3.924e^-4	0.787	SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15438833	2R_15438833_INS [dm3] 2R_19551328_INS [dm6]	T	TT	3.929e^-4	0.787	UPSTREAM CG43111 INTRON sm
3L	12585892	3L_12585892_SNP [dm3] 3L_12592792_SNP [dm6]	G	A	3.943e^-4	0.787	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14769431	2L_14769431_SNP [dm3] 2L_14769431_SNP [dm6]	A	C	3.946e^-4	0.787	INTERGENIC
3R	19433148	3R_19433148_SNP [dm3] 3R_23607426_SNP [dm6]	T	G	3.947e^-4	0.787	UTR_3_PRIME CG31145 INTRON CG31145
3R	23970876	3R_23970876_SNP [dm3] 3R_28145154_SNP [dm6]	T	C	3.973e^-4	0.787	INTERGENIC
3R	16013121	3R_16013121_SNP [dm3] 3R_20187399_SNP [dm6]	A	T	3.976e^-4	0.787	INTERGENIC
2L	15460805	2L_15460805_SNP [dm3] 2L_15460805_SNP [dm6]	A	G	3.976e^-4	0.787	INTERGENIC
2R	10401612	2R_10401612_SNP [dm3] 2R_14514107_SNP [dm6]	G	A	3.976e^-4	0.787	INTRON Cpr51A & 1 other
3R	9503987	3R_9503987_SNP [dm3] 3R_13678265_SNP [dm6]	T	A	3.976e^-4	0.787	INTRON lkb1
3L	7328597	3L_7328597_DEL [dm3] 3L_7335497_DEL [dm6]	CGTG	A	3.983e^-4	0.787	UTR_3_PRIME eco UPSTREAM CG43780 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13150907	2R_13150907_SNP [dm3] 2R_17263402_SNP [dm6]	T	A	3.983e^-4	0.787	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10401784	2R_10401784_SNP [dm3] 2R_14514279_SNP [dm6]	C	A	3.985e^-4	0.787	SPLICE_SITE_REGION CG30197 INTRON Cpr51A & 1 other
2R	9401983	2R_9401983_SNP [dm3] 2R_13514478_SNP [dm6]	T	A	3.986e^-4	0.787	UTR_3_PRIME Vmat UPSTREAM CG13330	TF binding site mE1_TFBS_zfh1
X	16064013	X_16064013_SNP [dm3] X_16169980_SNP [dm6]	A	T	3.988e^-4	0.787	INTERGENIC
3R	21564816	3R_21564816_SNP [dm3] 3R_25739094_SNP [dm6]	A	G	3.994e^-4	0.787	SYNONYMOUS_CODING LpR2
2L	17015506	2L_17015506_SNP [dm3] 2L_17015506_SNP [dm6]	G	A	4.003e^-4	0.787	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16066604	3R_16066604_SNP [dm3] 3R_20240882_SNP [dm6]	G	A	4.006e^-4	0.787	INTRON Nlg4
3R	16066605	3R_16066605_SNP [dm3] 3R_20240883_SNP [dm6]	A	T	4.006e^-4	0.787	INTRON Nlg4
2R	8186621	2R_8186621_SNP [dm3] 2R_12299116_SNP [dm6]	A	G	4.009e^-4	0.787	UTR_3_PRIME CG42700 DOWNSTREAM CG42700 INTRON CG8850
2L	17105583	2L_17105583_SNP [dm3] 2L_17105583_SNP [dm6]	T	C	4.019e^-4	0.787	EXON CR45448
2L	15021615	2L_15021615_SNP [dm3] 2L_15021615_SNP [dm6]	G	T	4.024e^-4	0.787	INTRON GABA-B-R1
3L	4809522	3L_4809522_SNP [dm3] 3L_4809522_SNP [dm6]	A	G	4.028e^-4	0.787	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15032873	2R_15032873_SNP [dm3] 2R_19145368_SNP [dm6]	T	G	4.037e^-4	0.787	DOWNSTREAM CR43399 INTRON ena
2R	5305384	2R_5305384_SNP [dm3] 2R_9417879_SNP [dm6]	T	A	4.041e^-4	0.787	DOWNSTREAM wun2 INTERGENIC
2L	9503630	2L_9503630_SNP [dm3] 2L_9503630_SNP [dm6]	A	C	4.043e^-4	0.787	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad
3L	16822317	3L_16822317_SNP [dm3] 3L_16829217_SNP [dm6]	C	A	4.048e^-4	0.787	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2968604	3R_2968604_DEL [dm3] 3R_7142882_DEL [dm6]	TATCAAAATCTGATAAGTT...	T	4.050e^-4	0.787	UPSTREAM CR42738 DOWNSTREAM Fer1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15676140	2R_15676140_SNP [dm3] 2R_19788635_SNP [dm6]	T	C	4.062e^-4	0.787	EXON CR45231
2R	8164603	2R_8164603_SNP [dm3] 2R_12277098_SNP [dm6]	A	T	4.068e^-4	0.787	UTR_3_PRIME Cam DOWNSTREAM Cam
2L	13868274	2L_13868274_SNP [dm3] 2L_13868274_SNP [dm6]	C	T	4.071e^-4	0.787	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4755304	X_4755304_SNP [dm3] X_4861271_SNP [dm6]	G	A	4.077e^-4	0.787	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4499623	2L_4499623_SNP [dm3] 2L_4499623_SNP [dm6]	C	T	4.078e^-4	0.787	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4499629	2L_4499629_SNP [dm3] 2L_4499629_SNP [dm6]	A	G	4.078e^-4	0.787	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13150010	2L_13150010_SNP [dm3] 2L_13150010_SNP [dm6]	C	A	4.080e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18741692	2R_18741692_SNP [dm3] 2R_22854169_SNP [dm6]	A	G	4.081e^-4	0.787	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17752632	3R_17752632_DEL [dm3] 3R_21926910_DEL [dm6]	AA	A	4.083e^-4	0.787	INTERGENIC
3R	13094614	3R_13094614_SNP [dm3] 3R_17268892_SNP [dm6]	G	A	4.090e^-4	0.787	INTERGENIC
3R	25913024	3R_25913024_SNP [dm3] 3R_30087302_SNP [dm6]	A	C	4.099e^-4	0.787	INTRON sima
3L	15696630	3L_15696630_SNP [dm3] 3L_15703530_SNP [dm6]	A	G	4.103e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	2263936	X_2263936_SNP [dm3] X_2369903_SNP [dm6]	G	T	4.106e^-4	0.787	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4218967	2L_4218967_SNP [dm3] 2L_4218967_SNP [dm6]	C	T	4.108e^-4	0.787	INTRON ft	TF binding site mE1_TFBS_HSA
3R	25893664	3R_25893664_SNP [dm3] 3R_30067942_SNP [dm6]	A	G	4.110e^-4	0.787	SYNONYMOUS_CODING sima
2R	16502797	2R_16502797_SNP [dm3] 2R_20615292_SNP [dm6]	T	C	4.120e^-4	0.787	INTRON Hil
X	4529975	X_4529975_SNP [dm3] X_4635942_SNP [dm6]	C	A	4.124e^-4	0.787	START_GAINED CG12179 UTR_5_PRIME CG12179 UPSTREAM pon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15184100	2R_15184100_SNP [dm3] 2R_19296595_SNP [dm6]	G	A	4.125e^-4	0.787	INTRON Tab2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4118577	2L_4118577_SNP [dm3] 2L_4118577_SNP [dm6]	C	G	4.135e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16630285	3R_16630285_SNP [dm3] 3R_20804563_SNP [dm6]	C	G	4.138e^-4	0.787	INTRON Syp
2R	14632146	2R_14632146_SNP [dm3] 2R_18744641_SNP [dm6]	G	T	4.146e^-4	0.787	INTRON Hs3st-A & 1 other
3L	18848688	3L_18848688_SNP [dm3] 3L_18855588_SNP [dm6]	T	C	4.147e^-4	0.787	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17695230	3R_17695230_SNP [dm3] 3R_21869508_SNP [dm6]	C	T	4.152e^-4	0.787	NON_SYNONYMOUS_CODING CG31174 DOWNSTREAM Cby	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10845599	3R_10845599_SNP [dm3] 3R_15019877_SNP [dm6]	A	G	4.152e^-4	0.787	INTERGENIC
2L	10854216	2L_10854216_SNP [dm3] 2L_10854216_SNP [dm6]	G	T	4.153e^-4	0.787	SYNONYMOUS_CODING CG43129 DOWNSTREAM Dnz1	TF binding site mE1_TFBS_chinmo
3R	22705771	3R_22705771_SNP [dm3] 3R_26880049_SNP [dm6]	G	T	4.161e^-4	0.787	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	21348170	3R_21348170_SNP [dm3] 3R_25522448_SNP [dm6]	A	T	4.163e^-4	0.787	INTRON msi
2L	10944956	2L_10944956_SNP [dm3] 2L_10944956_SNP [dm6]	G	C	4.166e^-4	0.787	INTRON dpr2
3R	17329191	3R_17329191_SNP [dm3] 3R_21503469_SNP [dm6]	T	C	4.167e^-4	0.787	INTRON C15	TF binding site mE1_TFBS_chinmo
2R	4981828	2R_4981828_SNP [dm3] 2R_9094323_SNP [dm6]	T	A	4.167e^-4	0.787	NON_SYNONYMOUS_CODING CG13741 UPSTREAM Uhg4	TF binding site mE1_TFBS_sens
X	16576897	X_16576897_SNP [dm3] X_16682864_SNP [dm6]	A	T	4.172e^-4	0.787	INTRON Axs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12933272	3L_12933272_DEL [dm3] 3L_12940172_DEL [dm6]	TTCAATTTCTGGGTT...	T	4.174e^-4	0.787	INTERGENIC
3R	23220590	3R_23220590_SNP [dm3] 3R_27394868_SNP [dm6]	C	T	4.175e^-4	0.787	INTRON side
3R	14049660	3R_14049660_SNP [dm3] 3R_18223938_SNP [dm6]	C	T	4.199e^-4	0.789	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12031715	3R_12031715_SNP [dm3] 3R_16205993_SNP [dm6]	G	T	4.200e^-4	0.789	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	16133324	3R_16133324_SNP [dm3] 3R_20307602_SNP [dm6]	C	A	4.201e^-4	0.789	UPSTREAM CG4362 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2222950	3L_2222950_SNP [dm3] 3L_2222950_SNP [dm6]	T	A	4.202e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12475383	2R_12475383_SNP [dm3] 2R_16587878_SNP [dm6]	G	A	4.208e^-4	0.789	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16178514	3R_16178514_SNP [dm3] 3R_20352792_SNP [dm6]	C	G	4.209e^-4	0.789	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.819e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1906 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	24797399	3R_24797399_SNP [dm3] 3R_28971677_SNP [dm6]	A	C	7.142e^-7	0.958	EXON CR45669
2R	13391822	2R_13391822_INS [dm3] 2R_17504317_INS [dm6]	T	TA	1.990e^-6	0.958	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
2L	9274751	2L_9274751_SNP [dm3] 2L_9274751_SNP [dm6]	C	T	3.647e^-6	0.958	INTRON Ggamma30A
3L	3241867	3L_3241867_SNP [dm3] 3L_3241867_SNP [dm6]	A	G	4.131e^-6	0.958	INTERGENIC
2L	9274746	2L_9274746_SNP [dm3] 2L_9274746_SNP [dm6]	T	A	4.714e^-6	0.958	INTRON Ggamma30A
2L	14036743	2L_14036743_SNP [dm3] 2L_14036743_SNP [dm6]	A	G	4.746e^-6	0.958	EXON CR45284
2R	11248676	2R_11248676_SNP [dm3] 2R_15361171_SNP [dm6]	C	T	4.850e^-6	0.958	INTRON unc-5
2L	19433475	2L_19433475_SNP [dm3] 2L_19433475_SNP [dm6]	C	A	7.751e^-6	0.958	INTRON Rab9
2L	14036715	2L_14036715_INS [dm3] 2L_14036715_INS [dm6]	C	CC	7.926e^-6	0.958	EXON CR45284
2L	6636236	2L_6636236_SNP [dm3] 2L_6636236_SNP [dm6]	C	A	8.074e^-6	0.958	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14036713	2L_14036713_SNP [dm3] 2L_14036713_SNP [dm6]	C	T	8.606e^-6	0.958	EXON CR45284
2L	3072111	2L_3072111_SNP [dm3] 2L_3072111_SNP [dm6]	A	G	8.725e^-6	0.958	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3241840	3L_3241840_SNP [dm3] 3L_3241840_SNP [dm6]	A	T	8.831e^-6	0.958	INTERGENIC
2L	19378740	2L_19378740_SNP [dm3] 2L_19378740_SNP [dm6]	G	A	9.394e^-6	0.958	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18110445	3L_18110445_SNP [dm3] 3L_18117345_SNP [dm6]	A	T	9.610e^-6	0.958	UTR_3_PRIME CG32195 INTRON CG7341
X	20202612	X_20202612_SNP [dm3] X_20331585_SNP [dm6]	C	T	9.782e^-6	0.958	INTERGENIC
2L	19561888	2L_19561888_SNP [dm3] 2L_19561888_SNP [dm6]	C	A	1.005e^-5	0.958	SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	7500556	3L_7500556_SNP [dm3] 3L_7507456_SNP [dm6]	G	A	1.033e^-5	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19378759	2L_19378759_SNP [dm3] 2L_19378759_SNP [dm6]	G	A	1.086e^-5	0.958	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17893459	3L_17893459_SNP [dm3] 3L_17900359_SNP [dm6]	T	C	1.120e^-5	0.958	SYNONYMOUS_CODING Prestin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2669591	2L_2669591_SNP [dm3] 2L_2669591_SNP [dm6]	A	G	1.247e^-5	0.958	UPSTREAM Gr23a INTERGENIC
2R	19120909	2R_19120909_SNP [dm3] 2R_23233386_SNP [dm6]	T	C	1.407e^-5	0.958	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18011183	3L_18011183_SNP [dm3] 3L_18018083_SNP [dm6]	G	C	1.425e^-5	0.958	INTRON Eip75B
2R	19120906	2R_19120906_SNP [dm3] 2R_23233383_SNP [dm6]	A	G	1.531e^-5	0.958	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20374416	2L_20374416_SNP [dm3] 2L_20374416_SNP [dm6]	G	T	1.594e^-5	0.958	UPSTREAM Ugt37a1 INTERGENIC
3R	16586215	3R_16586215_SNP [dm3] 3R_20760493_SNP [dm6]	G	T	1.711e^-5	0.958	SYNONYMOUS_CODING CG31195 INTRON Syp	TF binding site mE1_TFBS_sens
2L	9274706	2L_9274706_SNP [dm3] 2L_9274706_SNP [dm6]	C	T	1.843e^-5	0.958	INTRON Ggamma30A
2L	19423889	2L_19423889_SNP [dm3] 2L_19423889_SNP [dm6]	G	C	1.866e^-5	0.958	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	19427013	2L_19427013_SNP [dm3] 2L_19427013_SNP [dm6]	C	T	1.870e^-5	0.958	UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	20202592	X_20202592_INS [dm3] X_20331565_INS [dm6]	G	CA	1.966e^-5	0.958	INTERGENIC
3L	15069586	3L_15069586_SNP [dm3] 3L_15076486_SNP [dm6]	T	A	2.016e^-5	0.958	DOWNSTREAM Or71a INTRON cp309
3L	14963327	3L_14963327_SNP [dm3] 3L_14970227_SNP [dm6]	A	G	2.020e^-5	0.958	UTR_3_PRIME Tom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11046470	2L_11046470_SNP [dm3] 2L_11046470_SNP [dm6]	C	A	2.037e^-5	0.958	INTRON Samuel
3R	23884213	3R_23884213_SNP [dm3] 3R_28058491_SNP [dm6]	T	G	2.083e^-5	0.958	INTRON CG34362
2L	6636242	2L_6636242_SNP [dm3] 2L_6636242_SNP [dm6]	T	C	2.198e^-5	0.958	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25530959	3R_25530959_SNP [dm3] 3R_29705237_SNP [dm6]	G	C	2.238e^-5	0.958	INTERGENIC
X	6797819	X_6797819_SNP [dm3] X_6903786_SNP [dm6]	T	A	2.245e^-5	0.958	INTERGENIC
2L	19425045	2L_19425045_SNP [dm3] 2L_19425045_SNP [dm6]	G	T	2.372e^-5	0.958	INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
X	8229817	X_8229817_SNP [dm3] X_8335784_SNP [dm6]	T	A	2.388e^-5	0.958	INTRON nAChRalpha3
3R	15879585	3R_15879585_SNP [dm3] 3R_20053863_SNP [dm6]	G	C	2.551e^-5	0.958	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20123085	3L_20123085_SNP [dm3] 3L_20129985_SNP [dm6]	T	C	2.610e^-5	0.958	SYNONYMOUS_CODING gig DOWNSTREAM obst-J	TF binding site BDTNP1_TFBS_twi
2L	13639862	2L_13639862_SNP [dm3] 2L_13639862_SNP [dm6]	C	T	2.613e^-5	0.958	SPLICE_SITE_REGION ics SYNONYMOUS_CODING ics DOWNSTREAM kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	15764289	3L_15764289_SNP [dm3] 3L_15771189_SNP [dm6]	T	G	2.626e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9388736	2L_9388736_SNP [dm3] 2L_9388736_SNP [dm6]	T	A	2.635e^-5	0.958	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13221229	3L_13221229_SNP [dm3] 3L_13228129_SNP [dm6]	G	A	2.758e^-5	0.958	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	3241888	3L_3241888_DEL [dm3] 3L_3241888_DEL [dm6]	GTTTGAGAACTGC...	G	2.941e^-5	0.958	INTERGENIC
3L	20074541	3L_20074541_SNP [dm3] 3L_20081441_SNP [dm6]	G	A	3.077e^-5	0.958	INTRON sNPF-R
3L	11526187	3L_11526187_INS [dm3] 3L_11533087_INS [dm6]	A	ACATA	3.145e^-5	0.958	INTRON Mob2
3R	7679124	3R_7679124_SNP [dm3] 3R_11853402_SNP [dm6]	G	T	3.227e^-5	0.958	INTRON CG6959
2L	5603066	2L_5603066_SNP [dm3] 2L_5603066_SNP [dm6]	C	G	3.291e^-5	0.958	NON_SYNONYMOUS_CODING CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19561886	2L_19561886_SNP [dm3] 2L_19561886_SNP [dm6]	A	G	3.513e^-5	0.958	NON_SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	12736846	2L_12736846_SNP [dm3] 2L_12736846_SNP [dm6]	C	T	3.611e^-5	0.958	INTRON MRP
2L	11022963	2L_11022963_SNP [dm3] 2L_11022963_SNP [dm6]	C	A	3.617e^-5	0.958	INTRON Samuel
X	12791195	X_12791195_SNP [dm3] X_12897162_SNP [dm6]	T	G	3.658e^-5	0.958	UTR_5_PRIME Pde9 DOWNSTREAM CG32650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18011105	3L_18011105_SNP [dm3] 3L_18018005_SNP [dm6]	T	C	3.663e^-5	0.958	INTRON Eip75B
3L	11629372	3L_11629372_SNP [dm3] 3L_11636272_SNP [dm6]	A	G	3.743e^-5	0.958	INTRON CG32091
3R	16595602	3R_16595602_SNP [dm3] 3R_20769880_SNP [dm6]	A	G	3.748e^-5	0.958	DOWNSTREAM Takl1 INTRON Syp
2L	4025079	2L_4025079_SNP [dm3] 2L_4025079_SNP [dm6]	A	G	3.754e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4595283	3R_4595283_SNP [dm3] 3R_8769561_SNP [dm6]	G	T	3.755e^-5	0.958	SYNONYMOUS_CODING CG8236
X	15269192	X_15269192_SNP [dm3] X_15375159_SNP [dm6]	T	C	3.773e^-5	0.958	INTRON acj6
2R	19255988	2R_19255988_SNP [dm3] 2R_23368465_SNP [dm6]	G	A	3.779e^-5	0.958	INTRON Ice1	TF binding site mE1_TFBS_cad
3R	23884212	3R_23884212_SNP [dm3] 3R_28058490_SNP [dm6]	G	T	3.812e^-5	0.958	INTRON CG34362
3R	23884216	3R_23884216_SNP [dm3] 3R_28058494_SNP [dm6]	T	C	3.845e^-5	0.958	INTRON CG34362
2L	20388954	2L_20388954_SNP [dm3] 2L_20388954_SNP [dm6]	T	C	3.909e^-5	0.958	INTRON CG10947
3R	19442433	3R_19442433_SNP [dm3] 3R_23616711_SNP [dm6]	T	C	3.928e^-5	0.958	INTRON CG31145
2L	19804464	2L_19804464_SNP [dm3] 2L_19804464_SNP [dm6]	A	T	3.954e^-5	0.958	INTRON sick
2L	11022973	2L_11022973_SNP [dm3] 2L_11022973_SNP [dm6]	A	T	3.990e^-5	0.958	INTRON Samuel
2R	13944784	2R_13944784_SNP [dm3] 2R_18057279_SNP [dm6]	T	G	4.157e^-5	0.958	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18942207	2R_18942207_SNP [dm3] 2R_23054684_SNP [dm6]	G	A	4.238e^-5	0.958	UPSTREAM CG44252 INTERGENIC
3L	3242362	3L_3242362_SNP [dm3] 3L_3242362_SNP [dm6]	G	T	4.253e^-5	0.958	DOWNSTREAM CG12078 INTERGENIC
3L	14372474	3L_14372474_DEL [dm3] 3L_14379374_DEL [dm6]	CC	C	4.315e^-5	0.958	INTERGENIC
2R	16328556	2R_16328556_SNP [dm3] 2R_20441051_SNP [dm6]	G	A	4.430e^-5	0.958	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	16328557	2R_16328557_SNP [dm3] 2R_20441052_SNP [dm6]	A	G	4.530e^-5	0.958	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	9671702	2L_9671702_SNP [dm3] 2L_9671702_SNP [dm6]	T	A	4.609e^-5	0.958	UPSTREAM CR44150 INTERGENIC
3L	18167568	3L_18167568_SNP [dm3] 3L_18174468_SNP [dm6]	C	T	4.667e^-5	0.958	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6998261	3L_6998261_SNP [dm3] 3L_7005161_SNP [dm6]	G	A	4.676e^-5	0.958	INTRON Mp
X	19299442	X_19299442_SNP [dm3] X_19405409_SNP [dm6]	A	G	4.769e^-5	0.958	INTRON kek5
2L	6635831	2L_6635831_SNP [dm3] 2L_6635831_SNP [dm6]	T	C	4.771e^-5	0.958	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11193068	3L_11193068_SNP [dm3] 3L_11199968_SNP [dm6]	G	A	4.779e^-5	0.958	INTRON Plod & 1 other
2L	4930090	2L_4930090_SNP [dm3] 2L_4930090_SNP [dm6]	G	C	4.790e^-5	0.958	INTRON hoe1
3L	11041674	3L_11041674_SNP [dm3] 3L_11048574_SNP [dm6]	T	C	4.880e^-5	0.958	INTRON CG43693	TF binding site mE1_TFBS_sens mE1_TFBS_zfh1
2L	20374457	2L_20374457_SNP [dm3] 2L_20374457_SNP [dm6]	G	A	4.973e^-5	0.958	UPSTREAM Ugt37a1 INTERGENIC
2L	16812198	2L_16812198_SNP [dm3] 2L_16812198_SNP [dm6]	C	T	5.038e^-5	0.958	INTRON CG13280 & 1 other
3L	18011104	3L_18011104_SNP [dm3] 3L_18018004_SNP [dm6]	T	G	5.050e^-5	0.958	INTRON Eip75B
3R	18292812	3R_18292812_SNP [dm3] 3R_22467090_SNP [dm6]	C	A	5.078e^-5	0.958	UTR_3_PRIME CG5377 DOWNSTREAM Pebp1	TF binding site mE1_TFBS_cad
2R	12016560	2R_12016560_SNP [dm3] 2R_16129055_SNP [dm6]	A	T	5.111e^-5	0.958	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4938165	2L_4938165_SNP [dm3] 2L_4938165_SNP [dm6]	G	C	5.168e^-5	0.958	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15269166	X_15269166_SNP [dm3] X_15375133_SNP [dm6]	A	C	5.176e^-5	0.958	INTRON acj6
3L	11573321	3L_11573321_SNP [dm3] 3L_11580221_SNP [dm6]	A	T	5.258e^-5	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2L	14036752	2L_14036752_INS [dm3] 2L_14036752_INS [dm6]	A	AATTGCCCAA	5.301e^-5	0.958	EXON CR45284
2R	7547398	2R_7547398_SNP [dm3] 2R_11659893_SNP [dm6]	T	C	5.413e^-5	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15757288	3L_15757288_SNP [dm3] 3L_15764188_SNP [dm6]	T	C	5.606e^-5	0.958	INTERGENIC
2R	14955652	2R_14955652_SNP [dm3] 2R_19068147_SNP [dm6]	A	T	5.680e^-5	0.958	INTRON 5-HT1A
3L	7205084	3L_7205084_SNP [dm3] 3L_7211984_SNP [dm6]	G	A	5.739e^-5	0.958	INTERGENIC
2L	6636177	2L_6636177_SNP [dm3] 2L_6636177_SNP [dm6]	T	G	5.797e^-5	0.958	NON_SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9908950	3L_9908950_SNP [dm3] 3L_9915850_SNP [dm6]	T	C	5.798e^-5	0.958	INTRON CG34356	TF binding site mE1_TFBS_inv
3L	20081289	3L_20081289_SNP [dm3] 3L_20088189_SNP [dm6]	C	G	5.834e^-5	0.958	INTRON sNPF-R
2L	2500983	2L_2500983_SNP [dm3] 2L_2500983_SNP [dm6]	T	G	5.838e^-5	0.958	INTERGENIC
3R	21479384	3R_21479384_SNP [dm3] 3R_25653662_SNP [dm6]	C	A	5.946e^-5	0.958	SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
3L	17902066	3L_17902066_SNP [dm3] 3L_17908966_SNP [dm6]	A	G	5.949e^-5	0.958	SYNONYMOUS_CODING CG14353 DOWNSTREAM CG5290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18027209	3L_18027209_SNP [dm3] 3L_18034109_SNP [dm6]	A	T	5.994e^-5	0.958	INTRON Eip75B	TF binding site BDTNP1_TFBS_sna
3L	18108133	3L_18108133_SNP [dm3] 3L_18115033_SNP [dm6]	T	C	6.083e^-5	0.958	SYNONYMOUS_CODING CG32195 INTRON CG7341	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	20074890	3L_20074890_DEL [dm3] 3L_20081790_DEL [dm6]	AGAGGCTCGGAAAATATAT...	A	6.088e^-5	0.958	INTRON sNPF-R
2L	5910626	2L_5910626_SNP [dm3] 2L_5910626_SNP [dm6]	T	C	6.108e^-5	0.958	SYNONYMOUS_CODING bchs UPSTREAM CG14000	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14955647	2R_14955647_SNP [dm3] 2R_19068142_SNP [dm6]	A	T	6.112e^-5	0.958	INTRON 5-HT1A
3R	16577204	3R_16577204_SNP [dm3] 3R_20751482_SNP [dm6]	C	T	6.119e^-5	0.958	INTRON CG42322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9519912	2L_9519912_SNP [dm3] 2L_9519912_SNP [dm6]	T	C	6.173e^-5	0.958	UTR_3_PRIME CG33298
X	16681730	X_16681730_SNP [dm3] X_16787697_SNP [dm6]	C	A	6.221e^-5	0.958	START_GAINED Sap30 UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4711528	2L_4711528_SNP [dm3] 2L_4711528_SNP [dm6]	T	C	6.240e^-5	0.958	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14955624	2R_14955624_SNP [dm3] 2R_19068119_SNP [dm6]	T	C	6.250e^-5	0.958	INTRON 5-HT1A
2L	19424533	2L_19424533_SNP [dm3] 2L_19424533_SNP [dm6]	G	A	6.256e^-5	0.958	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
2R	14955775	2R_14955775_SNP [dm3] 2R_19068270_SNP [dm6]	C	T	6.308e^-5	0.958	INTRON 5-HT1A
2R	3600669	2R_3600669_SNP [dm3] 2R_7713164_SNP [dm6]	G	A	6.366e^-5	0.958	SYNONYMOUS_CODING CG1942	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11046490	2L_11046490_DEL [dm3] 2L_11046490_DEL [dm6]	AGCATATA	A	6.402e^-5	0.958	INTRON Samuel
3L	14316478	3L_14316478_SNP [dm3] 3L_14323378_SNP [dm6]	T	A	6.425e^-5	0.958	INTRON fz & 1 other
3L	11637454	3L_11637454_SNP [dm3] 3L_11644354_SNP [dm6]	T	C	6.464e^-5	0.958	NON_SYNONYMOUS_CODING CG6071
3L	10996361	3L_10996361_SNP [dm3] 3L_11003261_SNP [dm6]	G	T	6.499e^-5	0.958	INTRON klu
2R	7547487	2R_7547487_SNP [dm3] 2R_11659982_SNP [dm6]	T	C	6.593e^-5	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site mE1_TFBS_HSA
X	7225658	X_7225658_SNP [dm3] X_7331625_SNP [dm6]	A	G	6.595e^-5	0.958	SYNONYMOUS_CODING CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3R	10201041	3R_10201041_SNP [dm3] 3R_14375319_SNP [dm6]	T	A	6.659e^-5	0.958	DOWNSTREAM CR44943 INTERGENIC
2R	13589113	2R_13589113_SNP [dm3] 2R_17701608_SNP [dm6]	T	A	6.662e^-5	0.958	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
3L	20095816	3L_20095816_SNP [dm3] 3L_20102716_SNP [dm6]	G	C	6.667e^-5	0.958	SYNONYMOUS_CODING CG14186	TF binding site mE1_TFBS_chinmo
3L	1898203	3L_1898203_SNP [dm3] 3L_1898203_SNP [dm6]	G	A	6.681e^-5	0.958	UPSTREAM CG1887 INTRON CG1887
2L	9276646	2L_9276646_SNP [dm3] 2L_9276646_SNP [dm6]	C	T	6.686e^-5	0.958	INTRON Ggamma30A
2R	4199104	2R_4199104_SNP [dm3] 2R_8311599_SNP [dm6]	T	A	6.724e^-5	0.958	UPSTREAM CR44450 & 1 other INTERGENIC
3R	25530963	3R_25530963_SNP [dm3] 3R_29705241_SNP [dm6]	G	A	6.837e^-5	0.958	INTERGENIC
2L	19416744	2L_19416744_SNP [dm3] 2L_19416744_SNP [dm6]	A	G	7.107e^-5	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
3L	11572330	3L_11572330_SNP [dm3] 3L_11579230_SNP [dm6]	T	C	7.129e^-5	0.958	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
3R	10201043	3R_10201043_SNP [dm3] 3R_14375321_SNP [dm6]	C	T	7.220e^-5	0.958	DOWNSTREAM CR44943 INTERGENIC
2R	14955648	2R_14955648_INS [dm3] 2R_19068143_INS [dm6]	T	TTTGTAAAAAAGAACT...	7.271e^-5	0.958	INTRON 5-HT1A
2L	19415946	2L_19415946_SNP [dm3] 2L_19415946_SNP [dm6]	A	G	7.341e^-5	0.958	INTRON Pax	TF binding site mE1_TFBS_HSA
3L	18185418	3L_18185418_SNP [dm3] 3L_18192318_SNP [dm6]	G	C	7.405e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	19436042	2L_19436042_SNP [dm3] 2L_19436042_SNP [dm6]	A	T	7.513e^-5	0.958	UTR_3_PRIME CG10237 DOWNSTREAM Rab9
2L	7808105	2L_7808105_DEL [dm3] 2L_7808105_DEL [dm6]	CACC	C	7.531e^-5	0.958	INTRON cdc14	TF binding site mE1_TFBS_HSA
3R	18718088	3R_18718088_SNP [dm3] 3R_22892366_SNP [dm6]	A	T	7.589e^-5	0.958	INTERGENIC
2L	3118092	2L_3118092_DEL [dm3] 2L_3118092_DEL [dm6]	TT	A	7.598e^-5	0.958	INTRON toc
X	12354736	X_12354736_SNP [dm3] X_12460703_SNP [dm6]	T	A	7.836e^-5	0.958	INTRON Rab40
3L	14372491	3L_14372491_SNP [dm3] 3L_14379391_SNP [dm6]	T	A	7.852e^-5	0.958	INTERGENIC
3R	10201044	3R_10201044_DEL [dm3] 3R_14375322_DEL [dm6]	AATTG	A	7.874e^-5	0.958	DOWNSTREAM CR44943 INTERGENIC
3R	10201029	3R_10201029_SNP [dm3] 3R_14375307_SNP [dm6]	T	A	7.980e^-5	0.958	DOWNSTREAM CR44943 INTERGENIC
3L	1305061	3L_1305061_SNP [dm3] 3L_1305061_SNP [dm6]	C	T	8.057e^-5	0.958	UTR_3_PRIME CG2277 DOWNSTREAM CG2277 & 1 other
2L	17224215	2L_17224215_SNP [dm3] 2L_17224215_SNP [dm6]	G	A	8.079e^-5	0.958	INTRON beat-IIIc
3L	11636945	3L_11636945_SNP [dm3] 3L_11643845_SNP [dm6]	C	G	8.134e^-5	0.958	SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
3L	11632506	3L_11632506_SNP [dm3] 3L_11639406_SNP [dm6]	C	A	8.276e^-5	0.958	INTRON CG32091
X	8772442	X_8772442_INS [dm3] X_8878409_INS [dm6]	G	GG	8.303e^-5	0.958	INTRON Moe
3L	967865	3L_967865_SNP [dm3] 3L_967865_SNP [dm6]	C	T	8.314e^-5	0.958	INTRON Glut1
X	7038159	X_7038159_SNP [dm3] X_7144126_SNP [dm6]	T	G	8.373e^-5	0.958	INTRON CG9650	TF binding site mE1_TFBS_inv
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	8.436e^-5	0.958	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	15919463	3R_15919463_SNP [dm3] 3R_20093741_SNP [dm6]	C	G	8.495e^-5	0.958	INTERGENIC
X	6797828	X_6797828_SNP [dm3] X_6903795_SNP [dm6]	T	A	8.505e^-5	0.958	INTERGENIC
3L	15218433	3L_15218433_SNP [dm3] 3L_15225333_SNP [dm6]	G	A	8.552e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2544392	2L_2544392_SNP [dm3] 2L_2544392_SNP [dm6]	C	T	8.650e^-5	0.958	INTERGENIC
3R	7681939	3R_7681939_SNP [dm3] 3R_11856217_SNP [dm6]	A	T	8.899e^-5	0.958	INTRON CG6959	TF binding site mE1_TFBS_cad
3L	15162552	3L_15162552_SNP [dm3] 3L_15169452_SNP [dm6]	C	T	8.930e^-5	0.958	INTERGENIC
3L	18027426	3L_18027426_SNP [dm3] 3L_18034326_SNP [dm6]	C	T	8.946e^-5	0.958	INTRON Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19426694	2L_19426694_SNP [dm3] 2L_19426694_SNP [dm6]	A	G	8.969e^-5	0.958	UTR_5_PRIME CG16771 & 1 other UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14955656	2R_14955656_SNP [dm3] 2R_19068151_SNP [dm6]	A	T	8.993e^-5	0.958	INTRON 5-HT1A
3R	10561574	3R_10561574_SNP [dm3] 3R_14735852_SNP [dm6]	A	C	9.061e^-5	0.958	INTRON eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19426783	2L_19426783_SNP [dm3] 2L_19426783_SNP [dm6]	G	T	9.176e^-5	0.958	START_GAINED CG16771 UTR_5_PRIME CG16771 UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19426839	2L_19426839_SNP [dm3] 2L_19426839_SNP [dm6]	A	G	9.176e^-5	0.958	START_GAINED CG16771 UTR_5_PRIME CG16771 UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21668868	3R_21668868_SNP [dm3] 3R_25843146_SNP [dm6]	C	T	9.218e^-5	0.958	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
2L	16078839	2L_16078839_SNP [dm3] 2L_16078839_SNP [dm6]	T	C	9.285e^-5	0.958	INTRON beat-Ia
2R	12344195	2R_12344195_SNP [dm3] 2R_16456690_SNP [dm6]	A	C	9.291e^-5	0.958	INTERGENIC
3R	9095204	3R_9095204_SNP [dm3] 3R_13269482_SNP [dm6]	A	G	9.298e^-5	0.958	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
X	6797607	X_6797607_SNP [dm3] X_6903574_SNP [dm6]	C	T	9.336e^-5	0.958	INTERGENIC
2R	14955642	2R_14955642_SNP [dm3] 2R_19068137_SNP [dm6]	T	A	9.337e^-5	0.958	INTRON 5-HT1A
2R	6237951	2R_6237951_SNP [dm3] 2R_10350446_SNP [dm6]	A	T	9.364e^-5	0.958	INTRON CG42732
3L	17328787	3L_17328787_SNP [dm3] 3L_17335687_SNP [dm6]	G	C	9.389e^-5	0.958	DOWNSTREAM CR44564 INTERGENIC
2L	17576547	2L_17576547_SNP [dm3] 2L_17576547_SNP [dm6]	C	T	9.402e^-5	0.958	INTERGENIC
3L	15866502	3L_15866502_SNP [dm3] 3L_15873402_SNP [dm6]	T	C	9.433e^-5	0.958	INTRON pHCl
2L	17272827	2L_17272827_SNP [dm3] 2L_17272827_SNP [dm6]	G	T	9.684e^-5	0.958	INTERGENIC
2L	19890961	2L_19890961_SNP [dm3] 2L_19890961_SNP [dm6]	A	C	9.762e^-5	0.958	SYNONYMOUS_CODING CG10481 INTRON sick
2L	4711522	2L_4711522_SNP [dm3] 2L_4711522_SNP [dm6]	T	G	9.819e^-5	0.958	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8354098	X_8354098_SNP [dm3] X_8460065_SNP [dm6]	G	A	9.852e^-5	0.958	INTRON CG15347	transposable element FlyBase
2L	16779271	2L_16779271_SNP [dm3] 2L_16779271_SNP [dm6]	T	G	9.883e^-5	0.958	INTRON Mhc
2R	8517338	2R_8517338_SNP [dm3] 2R_12629833_SNP [dm6]	G	C	9.917e^-5	0.958	SYNONYMOUS_CODING muskelin
3R	24630145	3R_24630145_SNP [dm3] 3R_28804423_SNP [dm6]	T	A	1.000e^-4	0.958	INTERGENIC
X	6665727	X_6665727_DEL [dm3] X_6771694_DEL [dm6]	CCATCCTGATCACC...	C	1.009e^-4	0.958	DOWNSTREAM CG14438 INTRON COQ7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6797818	X_6797818_SNP [dm3] X_6903785_SNP [dm6]	A	T	1.016e^-4	0.958	INTERGENIC
X	12791258	X_12791258_SNP [dm3] X_12897225_SNP [dm6]	T	G	1.026e^-4	0.958	UTR_5_PRIME Pde9 DOWNSTREAM CG32650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	10887813	2R_10887813_SNP [dm3] 2R_15000308_SNP [dm6]	G	T	1.028e^-4	0.958	INTERGENIC
3R	4220244	3R_4220244_DEL [dm3] 3R_8394522_DEL [dm6]	TT	T	1.029e^-4	0.958	INTRON CG45263
3L	12332047	3L_12332047_SNP [dm3] 3L_12338947_SNP [dm6]	G	T	1.032e^-4	0.958	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18027347	3L_18027347_DEL [dm3] 3L_18034247_DEL [dm6]	AA	A	1.038e^-4	0.958	INTRON Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15152445	3L_15152445_SNP [dm3] 3L_15159345_SNP [dm6]	T	C	1.039e^-4	0.958	SYNONYMOUS_CODING Prp31 UPSTREAM Msh6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7277829	3L_7277829_SNP [dm3] 3L_7284729_SNP [dm6]	G	A	1.049e^-4	0.958	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2L	14325594	2L_14325594_SNP [dm3] 2L_14325594_SNP [dm6]	C	T	1.050e^-4	0.958	INTRON wb	TF binding site mE1_TFBS_cad
X	16681700	X_16681700_INS [dm3] X_16787667_INS [dm6]	A	AA	1.065e^-4	0.958	UPSTREAM Sap30 & 1 other INTRON Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	25266613	3R_25266613_SNP [dm3] 3R_29440891_SNP [dm6]	G	T	1.071e^-4	0.958	INTRON Ptp99A
3L	15158891	3L_15158891_SNP [dm3] 3L_15165791_SNP [dm6]	G	A	1.075e^-4	0.958	INTERGENIC
2L	19424388	2L_19424388_SNP [dm3] 2L_19424388_SNP [dm6]	G	C	1.085e^-4	0.958	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6519878	X_6519878_SNP [dm3] X_6625845_SNP [dm6]	T	C	1.089e^-4	0.958	INTRON pigs
2L	19416725	2L_19416725_SNP [dm3] 2L_19416725_SNP [dm6]	C	T	1.090e^-4	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2R	13944868	2R_13944868_SNP [dm3] 2R_18057363_SNP [dm6]	G	T	1.094e^-4	0.958	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
3L	6129928	3L_6129928_SNP [dm3] 3L_6136828_SNP [dm6]	T	G	1.104e^-4	0.958	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
3L	18063020	3L_18063020_SNP [dm3] 3L_18069920_SNP [dm6]	C	A	1.108e^-4	0.958	NON_SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
2L	19415947	2L_19415947_SNP [dm3] 2L_19415947_SNP [dm6]	G	T	1.112e^-4	0.958	INTRON Pax	TF binding site mE1_TFBS_HSA
3R	19442442	3R_19442442_SNP [dm3] 3R_23616720_SNP [dm6]	T	C	1.114e^-4	0.958	INTRON CG31145
X	12991838	X_12991838_SNP [dm3] X_13097805_SNP [dm6]	A	G	1.117e^-4	0.958	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10035995	3L_10035995_SNP [dm3] 3L_10042895_SNP [dm6]	T	C	1.119e^-4	0.958	INTRON dpr6
3R	22631216	3R_22631216_SNP [dm3] 3R_26805494_SNP [dm6]	G	A	1.126e^-4	0.958	DOWNSTREAM snoRNA:Me28S-U1554 INTRON Tl
3R	21339298	3R_21339298_SNP [dm3] 3R_25513576_SNP [dm6]	G	C	1.138e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12991805	X_12991805_SNP [dm3] X_13097772_SNP [dm6]	C	T	1.143e^-4	0.958	INTRON CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18011157	3L_18011157_SNP [dm3] 3L_18018057_SNP [dm6]	G	A	1.144e^-4	0.958	INTRON Eip75B
2R	14955621	2R_14955621_INS [dm3] 2R_19068116_INS [dm6]	A	AAAACATGCAGAGCTAATCA...	1.145e^-4	0.958	INTRON 5-HT1A
X	6797793	X_6797793_SNP [dm3] X_6903760_SNP [dm6]	G	T	1.146e^-4	0.958	INTERGENIC
3L	7332617	3L_7332617_SNP [dm3] 3L_7339517_SNP [dm6]	G	A	1.149e^-4	0.958	UTR_5_PRIME lark UPSTREAM eco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15053083	3R_15053083_SNP [dm3] 3R_19227361_SNP [dm6]	G	A	1.151e^-4	0.958	SYNONYMOUS_CODING CG11703 UPSTREAM vib DOWNSTREAM CG5250	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18066180	3L_18066180_SNP [dm3] 3L_18073080_SNP [dm6]	C	T	1.153e^-4	0.958	NON_SYNONYMOUS_CODING CG44004 UPSTREAM CG44005
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	1.161e^-4	0.958	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15002427	2R_15002427_SNP [dm3] 2R_19114922_SNP [dm6]	T	C	1.163e^-4	0.958	INTRON 5-HT1A
2L	20389309	2L_20389309_SNP [dm3] 2L_20389309_SNP [dm6]	T	C	1.176e^-4	0.958	INTRON CG10947
3L	13686641	3L_13686641_SNP [dm3] 3L_13693541_SNP [dm6]	T	G	1.179e^-4	0.958	INTRON bru-3
X	13711003	X_13711003_DEL [dm3] X_13816970_DEL [dm6]	GCGCAATCGGTTTTCG...	G	1.179e^-4	0.958	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12032504	3R_12032504_SNP [dm3] 3R_16206782_SNP [dm6]	A	T	1.185e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11573197	3L_11573197_SNP [dm3] 3L_11580097_SNP [dm6]	T	C	1.193e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
X	16795164	X_16795164_SNP [dm3] X_16901131_SNP [dm6]	G	A	1.196e^-4	0.958	DOWNSTREAM CR44754 INTERGENIC
X	17451485	X_17451485_SNP [dm3] X_17557452_SNP [dm6]	C	A	1.197e^-4	0.958	INTRON CG43658
2L	19440132	2L_19440132_SNP [dm3] 2L_19440132_SNP [dm6]	C	T	1.200e^-4	0.958	INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9276617	2L_9276617_DEL [dm3] 2L_9276617_DEL [dm6]	TT	T	1.202e^-4	0.958	INTRON Ggamma30A
3L	15537008	3L_15537008_SNP [dm3] 3L_15543908_SNP [dm6]	C	T	1.203e^-4	0.958	INTRON CrebA
3L	18010908	3L_18010908_SNP [dm3] 3L_18017808_SNP [dm6]	A	C	1.205e^-4	0.958	INTRON Eip75B
3R	21186746	3R_21186746_SNP [dm3] 3R_25361024_SNP [dm6]	T	C	1.207e^-4	0.958	DOWNSTREAM CG11913 INTRON Fur1	TF binding site mE1_TFBS_inv
3R	26054512	3R_26054512_SNP [dm3] 3R_30228790_SNP [dm6]	G	A	1.214e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	19893456	2L_19893456_INS [dm3] 2L_19893456_INS [dm6]	T	TGT	1.216e^-4	0.958	UPSTREAM CG10481 INTRON sick
2L	3659608	2L_3659608_SNP [dm3] 2L_3659608_SNP [dm6]	C	G	1.218e^-4	0.958	INTERGENIC
X	15269167	X_15269167_SNP [dm3] X_15375134_SNP [dm6]	A	C	1.223e^-4	0.958	INTRON acj6
3L	12279853	3L_12279853_SNP [dm3] 3L_12286753_SNP [dm6]	A	G	1.228e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19423809	2L_19423809_SNP [dm3] 2L_19423809_SNP [dm6]	G	A	1.231e^-4	0.958	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	11283295	2R_11283295_SNP [dm3] 2R_15395790_SNP [dm6]	C	G	1.232e^-4	0.958	INTERGENIC
2R	6237950	2R_6237950_SNP [dm3] 2R_10350445_SNP [dm6]	C	A	1.236e^-4	0.958	INTRON CG42732
3L	7258036	3L_7258036_DEL [dm3] 3L_7264936_DEL [dm6]	GTTTGCGCAGTTAGCATTAG...	G	1.236e^-4	0.958	INTERGENIC
2L	9389047	2L_9389047_SNP [dm3] 2L_9389047_SNP [dm6]	T	A	1.236e^-4	0.958	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi
3L	18110720	3L_18110720_DEL [dm3] 3L_18117620_DEL [dm6]	AA	A	1.259e^-4	0.958	UTR_3_PRIME CG32195 INTRON CG7341
X	6725641	X_6725641_SNP [dm3] X_6831608_SNP [dm6]	A	G	1.259e^-4	0.958	SYNONYMOUS_CODING CG12796 INTRON nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2885409	3L_2885409_SNP [dm3] 3L_2885409_SNP [dm6]	G	C	1.264e^-4	0.958	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	20073193	3L_20073193_SNP [dm3] 3L_20080093_SNP [dm6]	G	A	1.277e^-4	0.958	INTRON sNPF-R
2R	8517712	2R_8517712_SNP [dm3] 2R_12630207_SNP [dm6]	C	G	1.280e^-4	0.958	SYNONYMOUS_CODING muskelin
2L	17521446	2L_17521446_SNP [dm3] 2L_17521446_SNP [dm6]	T	G	1.281e^-4	0.958	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2L	9619984	2L_9619984_SNP [dm3] 2L_9619984_SNP [dm6]	G	A	1.287e^-4	0.958	INTRON GlcAT-S
X	10975420	X_10975420_SNP [dm3] X_11081387_SNP [dm6]	A	G	1.293e^-4	0.958	INTRON sev
3L	18248331	3L_18248331_INS [dm3] 3L_18255231_INS [dm6]	T	AA	1.297e^-4	0.958	INTERGENIC
2R	14955367	2R_14955367_SNP [dm3] 2R_19067862_SNP [dm6]	A	C	1.298e^-4	0.958	INTRON 5-HT1A
3L	20074913	3L_20074913_DEL [dm3] 3L_20081813_DEL [dm6]	AAAAATTTAATCC...	A	1.303e^-4	0.958	INTRON sNPF-R
2R	12481621	2R_12481621_SNP [dm3] 2R_16594116_SNP [dm6]	T	C	1.308e^-4	0.958	UTR_5_PRIME CG8306 DOWNSTREAM CG8303	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26114512	3R_26114512_SNP [dm3] 3R_30288790_SNP [dm6]	C	A	1.308e^-4	0.958	INTRON hdc
3L	19679554	3L_19679554_SNP [dm3] 3L_19686454_SNP [dm6]	A	G	1.310e^-4	0.958	SYNONYMOUS_CODING CG8765	TF binding site mE1_TFBS_sens
2L	19433221	2L_19433221_SNP [dm3] 2L_19433221_SNP [dm6]	T	C	1.317e^-4	0.958	DOWNSTREAM CG9987 INTRON Rab9	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20995234	3R_20995234_SNP [dm3] 3R_25169512_SNP [dm6]	G	T	1.318e^-4	0.958	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3241902	3L_3241902_SNP [dm3] 3L_3241902_SNP [dm6]	A	T	1.320e^-4	0.958	INTERGENIC
2L	16820052	2L_16820052_SNP [dm3] 2L_16820052_SNP [dm6]	C	T	1.323e^-4	0.958	INTRON CG13280 & 1 other
3L	6998227	3L_6998227_SNP [dm3] 3L_7005127_SNP [dm6]	C	T	1.332e^-4	0.958	INTRON Mp
2L	14004898	2L_14004898_SNP [dm3] 2L_14004898_SNP [dm6]	G	A	1.335e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7818591	3L_7818591_SNP [dm3] 3L_7825491_SNP [dm6]	C	T	1.336e^-4	0.958	INTRON Pdp1
2R	7703252	2R_7703252_SNP [dm3] 2R_11815747_SNP [dm6]	G	A	1.337e^-4	0.958	INTERGENIC
3R	17616265	3R_17616265_SNP [dm3] 3R_21790543_SNP [dm6]	T	C	1.338e^-4	0.958	INTRON CASK	TF binding site BDTNP1_TFBS_twi
2R	12231140	2R_12231140_SNP [dm3] 2R_16343635_SNP [dm6]	A	G	1.345e^-4	0.958	UPSTREAM Nup62 & 1 other INTRON CG7997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3241735	3L_3241735_SNP [dm3] 3L_3241735_SNP [dm6]	C	T	1.346e^-4	0.958	INTERGENIC
X	12791218	X_12791218_SNP [dm3] X_12897185_SNP [dm6]	G	A	1.358e^-4	0.958	UTR_5_PRIME Pde9 DOWNSTREAM CG32650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	15533739	3L_15533739_SNP [dm3] 3L_15540639_SNP [dm6]	C	G	1.369e^-4	0.958	INTRON CrebA	TF binding site BDTNP1_TFBS_dl
3L	17901602	3L_17901602_SNP [dm3] 3L_17908502_SNP [dm6]	A	G	1.374e^-4	0.958	SYNONYMOUS_CODING CG14353 UPSTREAM Prestin DOWNSTREAM CG5290	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13806484	2L_13806484_SNP [dm3] 2L_13806484_SNP [dm6]	C	T	1.375e^-4	0.958	INTRON CAH1
2L	5910782	2L_5910782_SNP [dm3] 2L_5910782_SNP [dm6]	T	C	1.380e^-4	0.958	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da
2L	17653224	2L_17653224_SNP [dm3] 2L_17653224_SNP [dm6]	G	A	1.384e^-4	0.958	INTRON CadN
3L	15866517	3L_15866517_SNP [dm3] 3L_15873417_SNP [dm6]	T	A	1.400e^-4	0.958	INTRON pHCl
3R	7681304	3R_7681304_SNP [dm3] 3R_11855582_SNP [dm6]	A	G	1.402e^-4	0.958	INTRON CG6959
3L	7818588	3L_7818588_SNP [dm3] 3L_7825488_SNP [dm6]	T	C	1.415e^-4	0.958	INTRON Pdp1
3L	14316466	3L_14316466_SNP [dm3] 3L_14323366_SNP [dm6]	C	T	1.424e^-4	0.958	INTRON fz & 1 other
2L	11340349	2L_11340349_SNP [dm3] 2L_11340349_SNP [dm6]	T	A	1.432e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10201033	3R_10201033_SNP [dm3] 3R_14375311_SNP [dm6]	A	T	1.445e^-4	0.958	DOWNSTREAM CR44943 INTERGENIC
2L	11046453	2L_11046453_SNP [dm3] 2L_11046453_SNP [dm6]	G	T	1.454e^-4	0.958	INTRON Samuel
2L	19324713	2L_19324713_SNP [dm3] 2L_19324713_SNP [dm6]	A	G	1.457e^-4	0.958	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8702953	2L_8702953_SNP [dm3] 2L_8702953_SNP [dm6]	T	C	1.474e^-4	0.958	UPSTREAM CR44992 INTRON Hnf4
2L	20567278	2L_20567278_SNP [dm3] 2L_20567278_SNP [dm6]	G	A	1.477e^-4	0.958	INTRON CR45347
2L	19757479	2L_19757479_SNP [dm3] 2L_19757479_SNP [dm6]	A	C	1.478e^-4	0.958	NON_SYNONYMOUS_CODING CG10628 UPSTREAM CG10631
3L	15162531	3L_15162531_SNP [dm3] 3L_15169431_SNP [dm6]	T	A	1.482e^-4	0.958	INTERGENIC
2L	11046457	2L_11046457_SNP [dm3] 2L_11046457_SNP [dm6]	C	G	1.483e^-4	0.958	INTRON Samuel
2R	13952133	2R_13952133_SNP [dm3] 2R_18064628_SNP [dm6]	C	A	1.510e^-4	0.958	INTRON CG34386
3L	15162633	3L_15162633_INS [dm3] 3L_15169533_INS [dm6]	C	CAAATTAC	1.513e^-4	0.958	INTERGENIC
2R	15942434	2R_15942434_SNP [dm3] 2R_20054929_SNP [dm6]	T	G	1.515e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	20074124	3L_20074124_SNP [dm3] 3L_20081024_SNP [dm6]	A	G	1.516e^-4	0.958	INTRON sNPF-R
X	5204342	X_5204342_SNP [dm3] X_5310309_SNP [dm6]	T	C	1.518e^-4	0.958	SYNONYMOUS_CODING snf DOWNSTREAM TrxT
3L	3612833	3L_3612833_SNP [dm3] 3L_3612833_SNP [dm6]	A	G	1.526e^-4	0.958	INTRON CG10359
3R	11831739	3R_11831739_SNP [dm3] 3R_16006017_SNP [dm6]	A	C	1.530e^-4	0.958	INTRON CR42839
3R	11831741	3R_11831741_SNP [dm3] 3R_16006019_SNP [dm6]	C	G	1.530e^-4	0.958	INTRON CR42839
2R	5984137	2R_5984137_SNP [dm3] 2R_10096632_SNP [dm6]	T	C	1.537e^-4	0.958	UPSTREAM Jra DOWNSTREAM CG2269 INTRON Jra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	11572886	3L_11572886_SNP [dm3] 3L_11579786_SNP [dm6]	G	T	1.539e^-4	0.958	SYNONYMOUS_CODING CG43390
3L	17899317	3L_17899317_SNP [dm3] 3L_17906217_SNP [dm6]	T	C	1.541e^-4	0.958	INTRON Prestin
3R	7681945	3R_7681945_SNP [dm3] 3R_11856223_SNP [dm6]	C	T	1.543e^-4	0.958	INTRON CG6959	TF binding site mE1_TFBS_cad
2L	13577986	2L_13577986_SNP [dm3] 2L_13577986_SNP [dm6]	T	C	1.544e^-4	0.958	INTRON kuz
3L	13623864	3L_13623864_SNP [dm3] 3L_13630764_SNP [dm6]	C	T	1.550e^-4	0.958	INTRON bru-3
2L	7073391	2L_7073391_SNP [dm3] 2L_7073391_SNP [dm6]	A	C	1.552e^-4	0.958	INTRON Pvf2
2L	4258215	2L_4258215_SNP [dm3] 2L_4258215_SNP [dm6]	C	A	1.554e^-4	0.958	UPSTREAM CR45296 INTRON CG15425
3R	7674064	3R_7674064_SNP [dm3] 3R_11848342_SNP [dm6]	C	T	1.555e^-4	0.958	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16675000	3L_16675000_INS [dm3] 3L_16681900_INS [dm6]	A	AAA	1.565e^-4	0.958	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
2L	7225923	2L_7225923_SNP [dm3] 2L_7225923_SNP [dm6]	A	C	1.574e^-4	0.958	DOWNSTREAM Ndae1 INTRON Ndae1
3R	9095198	3R_9095198_SNP [dm3] 3R_13269476_SNP [dm6]	G	A	1.578e^-4	0.958	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
2L	6651748	2L_6651748_SNP [dm3] 2L_6651748_SNP [dm6]	T	G	1.584e^-4	0.958	NON_SYNONYMOUS_CODING Tango1	TF binding site mE1_TFBS_cad
2L	6886957	2L_6886957_SNP [dm3] 2L_6886957_SNP [dm6]	A	G	1.593e^-4	0.958	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
X	10975685	X_10975685_SNP [dm3] X_11081652_SNP [dm6]	C	A	1.616e^-4	0.958	INTRON sev	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	1.628e^-4	0.958	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	13497483	2L_13497483_SNP [dm3] 2L_13497483_SNP [dm6]	A	C	1.629e^-4	0.958	INTRON CG42784
3L	7131836	3L_7131836_SNP [dm3] 3L_7138736_SNP [dm6]	A	T	1.635e^-4	0.958	INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16665711	2R_16665711_SNP [dm3] 2R_20778206_SNP [dm6]	C	T	1.641e^-4	0.958	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	25155147	3R_25155147_SNP [dm3] 3R_29329425_SNP [dm6]	G	A	1.642e^-4	0.958	INTERGENIC
3R	12034890	3R_12034890_SNP [dm3] 3R_16209168_SNP [dm6]	G	A	1.645e^-4	0.958	UPSTREAM CR45637 & 1 other DOWNSTREAM CR45638 & 1 other INTERGENIC
X	20406957	X_20406957_SNP [dm3] X_20535930_SNP [dm6]	T	G	1.645e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8515645	2R_8515645_SNP [dm3] 2R_12628140_SNP [dm6]	T	G	1.647e^-4	0.958	DOWNSTREAM muskelin INTRON CG17760
X	7160588	X_7160588_DEL [dm3] X_7266555_DEL [dm6]	GC	G	1.648e^-4	0.958	UPSTREAM CG1958 INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	23585988	3R_23585988_SNP [dm3] 3R_27760266_SNP [dm6]	A	T	1.662e^-4	0.958	INTERGENIC
2L	16776718	2L_16776718_SNP [dm3] 2L_16776718_SNP [dm6]	C	T	1.675e^-4	0.958	INTRON Mhc
2L	18000833	2L_18000833_SNP [dm3] 2L_18000833_SNP [dm6]	C	T	1.687e^-4	0.958	INTERGENIC
3R	6724640	3R_6724640_SNP [dm3] 3R_10898918_SNP [dm6]	G	C	1.693e^-4	0.958	UPSTREAM CR45578 INTERGENIC
X	10909007	X_10909007_SNP [dm3] X_11014974_SNP [dm6]	C	T	1.695e^-4	0.958	INTRON CG42339
3L	11629668	3L_11629668_SNP [dm3] 3L_11636568_SNP [dm6]	G	A	1.710e^-4	0.958	INTRON CG32091
3L	18995371	3L_18995371_SNP [dm3] 3L_19002271_SNP [dm6]	G	A	1.723e^-4	0.958	SYNONYMOUS_CODING CG18136
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	1.732e^-4	0.958	INTRON Mhc
3L	9304358	3L_9304358_SNP [dm3] 3L_9311258_SNP [dm6]	T	A	1.734e^-4	0.958	INTERGENIC
2L	6916430	2L_6916430_SNP [dm3] 2L_6916430_SNP [dm6]	A	T	1.743e^-4	0.958	UTR_5_PRIME CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2L	18657457	2L_18657457_SNP [dm3] 2L_18657457_SNP [dm6]	T	A	1.749e^-4	0.958	INTRON MESR3
2L	5910692	2L_5910692_SNP [dm3] 2L_5910692_SNP [dm6]	A	G	1.755e^-4	0.958	SYNONYMOUS_CODING bchs UPSTREAM CG14000	TF binding site BDTNP1_TFBS_da
2R	18781562	2R_18781562_SNP [dm3] 2R_22894039_SNP [dm6]	T	C	1.756e^-4	0.958	SYNONYMOUS_CODING MED23 UPSTREAM CG3700	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15922260	3L_15922260_SNP [dm3] 3L_15929160_SNP [dm6]	T	A	1.764e^-4	0.958	INTRON Pka-C3
2L	19889027	2L_19889027_SNP [dm3] 2L_19889027_SNP [dm6]	C	T	1.773e^-4	0.958	INTRON sick
2R	6336531	2R_6336531_SNP [dm3] 2R_10449026_SNP [dm6]	C	T	1.816e^-4	0.958	DOWNSTREAM Cyp49a1 INTRON Galphao
2L	14409275	2L_14409275_SNP [dm3] 2L_14409275_SNP [dm6]	C	A	1.821e^-4	0.958	UTR_5_PRIME elB UPSTREAM CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7822610	2L_7822610_SNP [dm3] 2L_7822610_SNP [dm6]	C	A	1.821e^-4	0.958	INTRON CG7115
3L	11523502	3L_11523502_SNP [dm3] 3L_11530402_SNP [dm6]	C	T	1.854e^-4	0.958	INTRON Mob2
3L	11573336	3L_11573336_SNP [dm3] 3L_11580236_SNP [dm6]	C	T	1.856e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2L	19790635	2L_19790635_SNP [dm3] 2L_19790635_SNP [dm6]	T	A	1.861e^-4	0.958	INTRON CdGAPr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19757323	2L_19757323_SNP [dm3] 2L_19757323_SNP [dm6]	C	A	1.864e^-4	0.958	SYNONYMOUS_CODING CG10628 UPSTREAM CG10631
2L	19561910	2L_19561910_SNP [dm3] 2L_19561910_SNP [dm6]	T	C	1.882e^-4	0.958	NON_SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	8730413	X_8730413_SNP [dm3] X_8836380_SNP [dm6]	C	A	1.902e^-4	0.958	EXON CR45537
2L	9612342	2L_9612342_SNP [dm3] 2L_9612342_SNP [dm6]	G	A	1.909e^-4	0.958	NON_SYNONYMOUS_CODING gcm2 UPSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
X	16681661	X_16681661_SNP [dm3] X_16787628_SNP [dm6]	A	G	1.912e^-4	0.958	UPSTREAM Sap30 & 1 other INTRON Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	6727511	2L_6727511_SNP [dm3] 2L_6727511_SNP [dm6]	C	A	1.922e^-4	0.958	INTRON Liprin-alpha
2L	9276660	2L_9276660_SNP [dm3] 2L_9276660_SNP [dm6]	C	G	1.926e^-4	0.958	INTRON Ggamma30A
2R	6340056	2R_6340056_SNP [dm3] 2R_10452551_SNP [dm6]	A	G	1.932e^-4	0.958	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2R	14926512	2R_14926512_SNP [dm3] 2R_19039007_SNP [dm6]	T	C	1.934e^-4	0.958	INTERGENIC
2L	3659370	2L_3659370_SNP [dm3] 2L_3659370_SNP [dm6]	A	T	1.946e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19378636	2L_19378636_SNP [dm3] 2L_19378636_SNP [dm6]	T	A	1.947e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14926497	2R_14926497_SNP [dm3] 2R_19038992_SNP [dm6]	A	G	1.950e^-4	0.958	INTERGENIC
X	14547460	X_14547460_SNP [dm3] X_14653427_SNP [dm6]	A	T	1.954e^-4	0.958	UTR_5_PRIME NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	15239447	2L_15239447_DEL [dm3] 2L_15239447_DEL [dm6]	AA	C	1.956e^-4	0.958	INTRON ZnT35C
X	5360529	X_5360529_SNP [dm3] X_5466496_SNP [dm6]	C	T	1.957e^-4	0.958	INTRON SPR
3L	10361777	3L_10361777_SNP [dm3] 3L_10368677_SNP [dm6]	C	A	1.962e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5086558	2L_5086558_SNP [dm3] 2L_5086558_SNP [dm6]	A	C	1.975e^-4	0.958	INTRON pgant5
3L	11636305	3L_11636305_SNP [dm3] 3L_11643205_SNP [dm6]	G	A	1.976e^-4	0.958	DOWNSTREAM CG32091 INTRON CG6071
2R	10036591	2R_10036591_SNP [dm3] 2R_14149086_SNP [dm6]	C	T	1.983e^-4	0.958	NON_SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11573337	3L_11573337_SNP [dm3] 3L_11580237_SNP [dm6]	A	G	1.986e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2R	11247823	2R_11247823_SNP [dm3] 2R_15360318_SNP [dm6]	C	T	1.992e^-4	0.958	INTRON unc-5
3L	15439108	3L_15439108_SNP [dm3] 3L_15446008_SNP [dm6]	A	C	1.997e^-4	0.958	INTERGENIC
3L	11573344	3L_11573344_INS [dm3] 3L_11580244_INS [dm6]	AA	TTG	1.998e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2L	18909862	2L_18909862_SNP [dm3] 2L_18909862_SNP [dm6]	G	T	2.000e^-4	0.958	INTERGENIC
2L	7068889	2L_7068889_SNP [dm3] 2L_7068889_SNP [dm6]	A	T	2.001e^-4	0.958	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
3L	7500741	3L_7500741_SNP [dm3] 3L_7507641_SNP [dm6]	T	C	2.003e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18149448	3L_18149448_SNP [dm3] 3L_18156348_SNP [dm6]	G	A	2.005e^-4	0.958	SYNONYMOUS_CODING CG13699
3L	15162491	3L_15162491_SNP [dm3] 3L_15169391_SNP [dm6]	A	G	2.006e^-4	0.958	INTERGENIC
2L	5560606	2L_5560606_INS [dm3] 2L_5560606_INS [dm6]	T	TTTCTAA	2.010e^-4	0.958	INTRON GluRIIB
2L	7068813	2L_7068813_SNP [dm3] 2L_7068813_SNP [dm6]	G	C	2.018e^-4	0.958	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
2L	9391557	2L_9391557_SNP [dm3] 2L_9391557_SNP [dm6]	T	C	2.019e^-4	0.958	UTR_3_PRIME Aldh INTRON Shawl
3R	7682071	3R_7682071_SNP [dm3] 3R_11856349_SNP [dm6]	G	A	2.024e^-4	0.958	INTRON CG6959	TF binding site mE1_TFBS_cad
2L	19414283	2L_19414283_SNP [dm3] 2L_19414283_SNP [dm6]	G	A	2.025e^-4	0.958	INTRON Pax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	19790562	2L_19790562_SNP [dm3] 2L_19790562_SNP [dm6]	T	G	2.027e^-4	0.958	INTRON CdGAPr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	14926514	2R_14926514_SNP [dm3] 2R_19039009_SNP [dm6]	G	A	2.028e^-4	0.958	INTERGENIC
3L	11573340	3L_11573340_SNP [dm3] 3L_11580240_SNP [dm6]	T	A	2.031e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2L	4938179	2L_4938179_SNP [dm3] 2L_4938179_SNP [dm6]	G	A	2.051e^-4	0.958	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4712272	2L_4712272_SNP [dm3] 2L_4712272_SNP [dm6]	A	G	2.054e^-4	0.958	INTRON CG34351
3L	7013184	3L_7013184_SNP [dm3] 3L_7020084_SNP [dm6]	G	A	2.060e^-4	0.958	INTRON Mp
2L	11172294	2L_11172294_SNP [dm3] 2L_11172294_SNP [dm6]	T	A	2.063e^-4	0.958	UPSTREAM Vm32E INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	18012454	2L_18012454_SNP [dm3] 2L_18012454_SNP [dm6]	T	G	2.064e^-4	0.958	UTR_5_PRIME rdo UPSTREAM elfless
2L	9097410	2L_9097410_SNP [dm3] 2L_9097410_SNP [dm6]	T	C	2.071e^-4	0.958	UPSTREAM CG31609 INTERGENIC
2L	12279940	2L_12279940_SNP [dm3] 2L_12279940_SNP [dm6]	T	A	2.074e^-4	0.958	INTRON aret
2R	18711687	2R_18711687_SNP [dm3] 2R_22824164_SNP [dm6]	C	T	2.075e^-4	0.958	UPSTREAM CG30274 & 1 other INTRON CG42284
2R	1236098	2R_1236098_SNP [dm3] 2R_5348593_SNP [dm6]	C	T	2.076e^-4	0.958	INTERGENIC	transposable element FlyBase
3L	15561551	3L_15561551_SNP [dm3] 3L_15568451_SNP [dm6]	G	A	2.076e^-4	0.958	NON_SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12354637	X_12354637_SNP [dm3] X_12460604_SNP [dm6]	G	T	2.084e^-4	0.958	INTRON Rab40
X	15269170	X_15269170_SNP [dm3] X_15375137_SNP [dm6]	A	G	2.092e^-4	0.958	INTRON acj6
3L	5912154	3L_5912154_SNP [dm3] 3L_5919054_SNP [dm6]	G	T	2.095e^-4	0.958	INTRON CG10483 EXON CR45167
3L	4961239	3L_4961239_SNP [dm3] 3L_4961239_SNP [dm6]	T	C	2.098e^-4	0.958	INTRON Con
2R	11139276	2R_11139276_SNP [dm3] 2R_15251771_SNP [dm6]	T	A	2.100e^-4	0.958	UPSTREAM scb INTRON scb	TF binding site mE1_TFBS_Trl
3R	21479896	3R_21479896_SNP [dm3] 3R_25654174_SNP [dm6]	C	T	2.110e^-4	0.958	NON_SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
3L	15932699	3L_15932699_SNP [dm3] 3L_15939599_SNP [dm6]	C	G	2.116e^-4	0.958	INTRON Pka-C3
2L	3118171	2L_3118171_SNP [dm3] 2L_3118171_SNP [dm6]	T	C	2.117e^-4	0.958	INTRON toc
X	9642869	X_9642869_SNP [dm3] X_9748836_SNP [dm6]	C	G	2.125e^-4	0.958	INTRON Sp1
2L	6652895	2L_6652895_SNP [dm3] 2L_6652895_SNP [dm6]	G	A	2.143e^-4	0.958	SYNONYMOUS_CODING Tango1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9275081	2L_9275081_SNP [dm3] 2L_9275081_SNP [dm6]	G	A	2.143e^-4	0.958	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_dl
X	6798306	X_6798306_SNP [dm3] X_6904273_SNP [dm6]	C	T	2.143e^-4	0.958	INTERGENIC
X	8355953	X_8355953_SNP [dm3] X_8461920_SNP [dm6]	A	C	2.148e^-4	0.958	NON_SYNONYMOUS_CODING Es2 SPLICE_SITE_REGION Es2	TF binding site mE1_TFBS_sens
2L	16149214	2L_16149214_SNP [dm3] 2L_16149214_SNP [dm6]	T	G	2.153e^-4	0.958	INTERGENIC
3R	26693433	3R_26693433_SNP [dm3] 3R_30867711_SNP [dm6]	C	T	2.154e^-4	0.958	INTRON Cpr100A
X	20211788	X_20211788_SNP [dm3] X_20340761_SNP [dm6]	G	C	2.157e^-4	0.958	INTERGENIC
3R	11827859	3R_11827859_SNP [dm3] 3R_16002137_SNP [dm6]	G	A	2.158e^-4	0.958	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	4108068	3L_4108068_SNP [dm3] 3L_4108068_SNP [dm6]	A	C	2.160e^-4	0.958	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1679041	3L_1679041_SNP [dm3] 3L_1679041_SNP [dm6]	C	T	2.163e^-4	0.958	INTRON CG7991
2R	12016564	2R_12016564_INS [dm3] 2R_16129059_INS [dm6]	C	CATCT	2.163e^-4	0.958	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1236069	2R_1236069_SNP [dm3] 2R_5348564_SNP [dm6]	A	G	2.167e^-4	0.958	INTERGENIC	transposable element FlyBase
X	16533830	X_16533830_SNP [dm3] X_16639797_SNP [dm6]	T	G	2.169e^-4	0.958	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26694018	3R_26694018_SNP [dm3] 3R_30868296_SNP [dm6]	A	G	2.174e^-4	0.958	SYNONYMOUS_CODING Cpr100A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2809323	3L_2809323_INS [dm3] 3L_2809323_INS [dm6]	A	AA	2.184e^-4	0.958	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12882228	3L_12882228_SNP [dm3] 3L_12889128_SNP [dm6]	T	A	2.185e^-4	0.958	SYNONYMOUS_CODING CG14120 UPSTREAM CG43894 DOWNSTREAM CR45748
3L	16968891	3L_16968891_SNP [dm3] 3L_16975791_SNP [dm6]	G	A	2.193e^-4	0.958	UPSTREAM Exn INTRON Exn
2R	19256994	2R_19256994_SNP [dm3] 2R_23369471_SNP [dm6]	G	A	2.199e^-4	0.958	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	1315484	2R_1315484_SNP [dm3] 2R_5427979_SNP [dm6]	C	A	2.206e^-4	0.958	INTRON laccase2	transposable element FlyBase
2R	7556766	2R_7556766_SNP [dm3] 2R_11669261_SNP [dm6]	C	T	2.211e^-4	0.958	SPLICE_SITE_REGION Tret1-1 INTRON Roc2 & 1 other
2R	20315220	2R_20315220_SNP [dm3] 2R_24427697_SNP [dm6]	G	T	2.214e^-4	0.958	INTRON prom	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	15561240	3L_15561240_SNP [dm3] 3L_15568140_SNP [dm6]	G	A	2.217e^-4	0.958	INTRON CG6498	TF binding site mE1_TFBS_chinmo
3L	2885548	3L_2885548_SNP [dm3] 3L_2885548_SNP [dm6]	C	A	2.218e^-4	0.958	INTRON spz5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7294253	2L_7294253_SNP [dm3] 2L_7294253_SNP [dm6]	C	G	2.219e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	17501487	2L_17501487_SNP [dm3] 2L_17501487_SNP [dm6]	G	A	2.223e^-4	0.958	SYNONYMOUS_CODING Dhc36C UPSTREAM CG6412	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17547248	3L_17547248_SNP [dm3] 3L_17554148_SNP [dm6]	G	T	2.226e^-4	0.958	SYNONYMOUS_CODING CycT	TF binding site BDTNP1_TFBS_dl
3L	20276285	3L_20276285_SNP [dm3] 3L_20283185_SNP [dm6]	A	G	2.237e^-4	0.958	INTRON gogo
X	10975398	X_10975398_SNP [dm3] X_11081365_SNP [dm6]	C	T	2.239e^-4	0.958	INTRON sev
X	11359451	X_11359451_SNP [dm3] X_11465418_SNP [dm6]	C	T	2.239e^-4	0.958	INTRON CG43155
3R	25231513	3R_25231513_SNP [dm3] 3R_29405791_SNP [dm6]	A	C	2.240e^-4	0.958	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3L	8453256	3L_8453256_SNP [dm3] 3L_8460156_SNP [dm6]	T	C	2.246e^-4	0.958	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	11573341	3L_11573341_SNP [dm3] 3L_11580241_SNP [dm6]	G	A	2.247e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2R	13589102	2R_13589102_SNP [dm3] 2R_17701597_SNP [dm6]	T	C	2.265e^-4	0.958	SPLICE_SITE_REGION Uhg1 UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
3R	18274446	3R_18274446_SNP [dm3] 3R_22448724_SNP [dm6]	T	C	2.266e^-4	0.958	INTRON CG34376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16997546	3R_16997546_SNP [dm3] 3R_21171824_SNP [dm6]	A	G	2.286e^-4	0.958	INTRON SNF4Agamma
X	1327633	X_1327633_SNP [dm3] X_1433600_SNP [dm6]	G	C	2.296e^-4	0.958	SYNONYMOUS_CODING futsch	TF binding site mE1_TFBS_chinmo
2L	6636230	2L_6636230_SNP [dm3] 2L_6636230_SNP [dm6]	C	T	2.304e^-4	0.958	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13545348	2L_13545348_SNP [dm3] 2L_13545348_SNP [dm6]	A	G	2.307e^-4	0.958	INTRON B4
2R	9270808	2R_9270808_SNP [dm3] 2R_13383303_SNP [dm6]	C	A	2.310e^-4	0.958	INTERGENIC
2R	9270806	2R_9270806_SNP [dm3] 2R_13383301_SNP [dm6]	C	T	2.319e^-4	0.958	INTERGENIC
2L	19379890	2L_19379890_SNP [dm3] 2L_19379890_SNP [dm6]	C	T	2.323e^-4	0.958	INTERGENIC
2L	19379903	2L_19379903_SNP [dm3] 2L_19379903_SNP [dm6]	G	C	2.323e^-4	0.958	INTERGENIC
2R	13123900	2R_13123900_SNP [dm3] 2R_17236395_SNP [dm6]	G	A	2.333e^-4	0.958	INTRON mbl
2L	12470653	2L_12470653_SNP [dm3] 2L_12470653_SNP [dm6]	G	T	2.334e^-4	0.958	INTRON bun
3R	17544014	3R_17544014_SNP [dm3] 3R_21718292_SNP [dm6]	T	C	2.336e^-4	0.958	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	11572895	3L_11572895_SNP [dm3] 3L_11579795_SNP [dm6]	G	T	2.345e^-4	0.958	SYNONYMOUS_CODING CG43390
2L	19893777	2L_19893777_SNP [dm3] 2L_19893777_SNP [dm6]	A	T	2.350e^-4	0.958	INTRON sick
3L	5343515	3L_5343515_SNP [dm3] 3L_5350415_SNP [dm6]	A	C	2.359e^-4	0.958	INTRON lama
2R	11143735	2R_11143735_SNP [dm3] 2R_15256230_SNP [dm6]	C	T	2.377e^-4	0.958	SPLICE_SITE_REGION scb INTRON scb	TF binding site mE1_TFBS_cad
X	13674597	X_13674597_SNP [dm3] X_13780564_SNP [dm6]	C	T	2.379e^-4	0.958	SYNONYMOUS_CODING CtsB1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	15151854	3L_15151854_SNP [dm3] 3L_15158754_SNP [dm6]	G	A	2.379e^-4	0.958	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	14687115	3R_14687115_SNP [dm3] 3R_18861393_SNP [dm6]	A	T	2.387e^-4	0.958	INTERGENIC
3R	3235830	3R_3235830_SNP [dm3] 3R_7410108_SNP [dm6]	C	G	2.394e^-4	0.958	DOWNSTREAM Ir84a INTERGENIC
3L	15561640	3L_15561640_SNP [dm3] 3L_15568540_SNP [dm6]	T	C	2.400e^-4	0.958	SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6797525	X_6797525_SNP [dm3] X_6903492_SNP [dm6]	C	A	2.407e^-4	0.958	INTERGENIC
2L	19867232	2L_19867232_SNP [dm3] 2L_19867232_SNP [dm6]	A	T	2.411e^-4	0.958	INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	18711688	2R_18711688_SNP [dm3] 2R_22824165_SNP [dm6]	T	A	2.429e^-4	0.958	UPSTREAM CG30274 & 1 other INTRON CG42284
X	9063438	X_9063438_SNP [dm3] X_9169405_SNP [dm6]	C	A	2.436e^-4	0.958	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7681941	3R_7681941_SNP [dm3] 3R_11856219_SNP [dm6]	A	T	2.440e^-4	0.958	INTRON CG6959	TF binding site mE1_TFBS_cad
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	2.449e^-4	0.958	INTRON Mhc
X	20835006	X_20835006_SNP [dm3] X_20963979_SNP [dm6]	G	C	2.453e^-4	0.958	UPSTREAM Ser6 DOWNSTREAM CG1304 INTERGENIC
2R	3589481	2R_3589481_SNP [dm3] 2R_7701976_SNP [dm6]	C	T	2.463e^-4	0.958	NON_SYNONYMOUS_CODING CG30493 DOWNSTREAM CG30496
2L	11100132	2L_11100132_SNP [dm3] 2L_11100132_SNP [dm6]	G	C	2.464e^-4	0.958	SYNONYMOUS_CODING Ge-1 DOWNSTREAM Reps	TF binding site BDTNP1_TFBS_dl
3L	10721151	3L_10721151_SNP [dm3] 3L_10728051_SNP [dm6]	T	G	2.465e^-4	0.958	INTERGENIC
2L	15093971	2L_15093971_SNP [dm3] 2L_15093971_SNP [dm6]	G	A	2.474e^-4	0.958	INTRON CG15270
2L	9274631	2L_9274631_SNP [dm3] 2L_9274631_SNP [dm6]	A	T	2.475e^-4	0.958	INTRON Ggamma30A
3L	10361712	3L_10361712_SNP [dm3] 3L_10368612_SNP [dm6]	T	A	2.477e^-4	0.958	INTERGENIC
3L	16170495	3L_16170495_SNP [dm3] 3L_16177395_SNP [dm6]	A	G	2.483e^-4	0.958	DOWNSTREAM CR45754 EXON CR45755	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16170499	3L_16170499_SNP [dm3] 3L_16177399_SNP [dm6]	G	A	2.483e^-4	0.958	DOWNSTREAM CR45754 EXON CR45755	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20501644	X_20501644_SNP [dm3] X_20630617_SNP [dm6]	T	G	2.487e^-4	0.958	INTERGENIC
2L	19416761	2L_19416761_SNP [dm3] 2L_19416761_SNP [dm6]	A	C	2.489e^-4	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2R	19255766	2R_19255766_SNP [dm3] 2R_23368243_SNP [dm6]	C	T	2.496e^-4	0.958	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14081941	3R_14081941_SNP [dm3] 3R_18256219_SNP [dm6]	C	T	2.499e^-4	0.958	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi UPSTREAM Rpb4 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12484964	X_12484964_SNP [dm3] X_12590931_SNP [dm6]	G	A	2.506e^-4	0.958	INTRON LIMK1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	2557748	3L_2557748_SNP [dm3] 3L_2557748_SNP [dm6]	G	T	2.515e^-4	0.958	INTRON msn
2L	19796124	2L_19796124_SNP [dm3] 2L_19796124_SNP [dm6]	A	G	2.515e^-4	0.958	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	11829226	3R_11829226_SNP [dm3] 3R_16003504_SNP [dm6]	G	T	2.518e^-4	0.958	UTR_3_PRIME srp DOWNSTREAM CR42839	TF binding site mE1_TFBS_cad
2L	19893617	2L_19893617_SNP [dm3] 2L_19893617_SNP [dm6]	A	T	2.520e^-4	0.958	INTRON sick
2L	11340334	2L_11340334_SNP [dm3] 2L_11340334_SNP [dm6]	T	A	2.525e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19422638	2L_19422638_SNP [dm3] 2L_19422638_SNP [dm6]	A	G	2.527e^-4	0.958	INTRON Pax
3R	4595553	3R_4595553_SNP [dm3] 3R_8769831_SNP [dm6]	T	C	2.532e^-4	0.958	SYNONYMOUS_CODING CG8236
2R	10886888	2R_10886888_SNP [dm3] 2R_14999383_SNP [dm6]	C	T	2.533e^-4	0.958	INTERGENIC
X	18953558	X_18953558_DEL [dm3] X_19059525_DEL [dm6]	CTAC	C	2.546e^-4	0.958	INTRON CG14190
2L	19890400	2L_19890400_SNP [dm3] 2L_19890400_SNP [dm6]	C	T	2.546e^-4	0.958	SYNONYMOUS_CODING CG10481 INTRON sick
X	16681549	X_16681549_SNP [dm3] X_16787516_SNP [dm6]	G	C	2.546e^-4	0.958	UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14379409	3L_14379409_SNP [dm3] 3L_14386309_SNP [dm6]	C	G	2.553e^-4	0.958	INTERGENIC
3L	20058234	3L_20058234_SNP [dm3] 3L_20065134_SNP [dm6]	T	C	2.557e^-4	0.958	INTRON sNPF-R
3L	15032432	3L_15032432_SNP [dm3] 3L_15039332_SNP [dm6]	C	T	2.558e^-4	0.958	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14697580	2L_14697580_SNP [dm3] 2L_14697580_SNP [dm6]	A	T	2.561e^-4	0.958	INTERGENIC
2R	19253856	2R_19253856_SNP [dm3] 2R_23366333_SNP [dm6]	G	A	2.566e^-4	0.958	UTR_5_PRIME vir UPSTREAM Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8566905	3L_8566905_SNP [dm3] 3L_8573805_SNP [dm6]	C	T	2.569e^-4	0.958	UTR_3_PRIME rhea DOWNSTREAM CG6638	TF binding site mE1_TFBS_cad
3L	3075084	3L_3075084_SNP [dm3] 3L_3075084_SNP [dm6]	C	T	2.575e^-4	0.958	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3118210	2L_3118210_SNP [dm3] 2L_3118210_SNP [dm6]	T	G	2.586e^-4	0.958	INTRON toc
2R	7547313	2R_7547313_SNP [dm3] 2R_11659808_SNP [dm6]	T	C	2.589e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6552220	X_6552220_DEL [dm3] X_6658187_DEL [dm6]	CTGCAGCCGCAAC...	C	2.599e^-4	0.958		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	5838927	3L_5838927_SNP [dm3] 3L_5845827_SNP [dm6]	A	T	2.601e^-4	0.958	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9829648	2L_9829648_SNP [dm3] 2L_9829648_SNP [dm6]	C	T	2.601e^-4	0.958	INTRON nAChRalpha6
2R	6149748	2R_6149748_SNP [dm3] 2R_10262243_SNP [dm6]	T	C	2.607e^-4	0.958	DOWNSTREAM CG12911 & 1 other EXON CR30009
2L	19371187	2L_19371187_SNP [dm3] 2L_19371187_SNP [dm6]	C	T	2.609e^-4	0.958	SYNONYMOUS_CODING CG17349
3R	25951086	3R_25951086_SNP [dm3] 3R_30125364_SNP [dm6]	G	A	2.612e^-4	0.958	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3R	21670835	3R_21670835_SNP [dm3] 3R_25845113_SNP [dm6]	C	G	2.614e^-4	0.958	UPSTREAM CR45654 DOWNSTREAM CR45653 INTERGENIC
2L	18795424	2L_18795424_SNP [dm3] 2L_18795424_SNP [dm6]	G	A	2.617e^-4	0.958	DOWNSTREAM CR44904 INTERGENIC
3L	2885521	3L_2885521_SNP [dm3] 3L_2885521_SNP [dm6]	A	G	2.617e^-4	0.958	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10532232	2R_10532232_SNP [dm3] 2R_14644727_SNP [dm6]	G	A	2.625e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19416747	2L_19416747_SNP [dm3] 2L_19416747_SNP [dm6]	C	A	2.627e^-4	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	19416779	2L_19416779_SNP [dm3] 2L_19416779_SNP [dm6]	G	C	2.627e^-4	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	4944228	2L_4944228_SNP [dm3] 2L_4944228_SNP [dm6]	C	G	2.636e^-4	0.958	SYNONYMOUS_CODING CG14044 DOWNSTREAM mRpL24
2L	11139909	2L_11139909_SNP [dm3] 2L_11139909_SNP [dm6]	G	C	2.636e^-4	0.958	SYNONYMOUS_CODING Gyc32E
2L	19629721	2L_19629721_SNP [dm3] 2L_19629721_SNP [dm6]	G	A	2.637e^-4	0.958	INTRON Lar
3R	16586592	3R_16586592_SNP [dm3] 3R_20760870_SNP [dm6]	T	A	2.644e^-4	0.958	INTRON Syp & 1 other	TF binding site mE1_TFBS_sens
3L	6264335	3L_6264335_SNP [dm3] 3L_6271235_SNP [dm6]	G	A	2.645e^-4	0.958	INTERGENIC
2L	19890958	2L_19890958_SNP [dm3] 2L_19890958_SNP [dm6]	T	C	2.652e^-4	0.958	SYNONYMOUS_CODING CG10481 INTRON sick
3L	7818526	3L_7818526_SNP [dm3] 3L_7825426_SNP [dm6]	A	T	2.662e^-4	0.958	INTRON Pdp1
2L	15093969	2L_15093969_SNP [dm3] 2L_15093969_SNP [dm6]	G	T	2.664e^-4	0.958	INTRON CG15270
2L	19757563	2L_19757563_SNP [dm3] 2L_19757563_SNP [dm6]	A	G	2.665e^-4	0.958	SYNONYMOUS_CODING CG10628 UPSTREAM CG10631	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	19890907	2L_19890907_SNP [dm3] 2L_19890907_SNP [dm6]	T	C	2.669e^-4	0.958	SYNONYMOUS_CODING CG10481 INTRON sick
3L	13997608	3L_13997608_SNP [dm3] 3L_14004508_SNP [dm6]	A	T	2.675e^-4	0.958	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	9941626	3L_9941626_SNP [dm3] 3L_9948526_SNP [dm6]	C	T	2.678e^-4	0.958	SYNONYMOUS_CODING CG34356
3L	21859851	3L_21859851_SNP [dm3] 3L_21866751_SNP [dm6]	A	C	2.691e^-4	0.958	INTRON mub	TF binding site BDTNP1_TFBS_twi
3L	18066342	3L_18066342_SNP [dm3] 3L_18073242_SNP [dm6]	A	C	2.693e^-4	0.958	INTRON CG44004
2L	17653225	2L_17653225_SNP [dm3] 2L_17653225_SNP [dm6]	G	T	2.694e^-4	0.958	INTRON CadN
2L	2839281	2L_2839281_SNP [dm3] 2L_2839281_SNP [dm6]	T	C	2.702e^-4	0.958	NON_SYNONYMOUS_CODING Cpr23B UPSTREAM CG2975 DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19014088	3R_19014088_SNP [dm3] 3R_23188366_SNP [dm6]	G	T	2.702e^-4	0.958	SYNONYMOUS_CODING cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6207608	2L_6207608_SNP [dm3] 2L_6207608_SNP [dm6]	C	T	2.711e^-4	0.958	SYNONYMOUS_CODING CG34380	TF binding site mE1_TFBS_chinmo
2L	2110535	2L_2110535_SNP [dm3] 2L_2110535_SNP [dm6]	C	T	2.715e^-4	0.958	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24928889	3R_24928889_SNP [dm3] 3R_29103167_SNP [dm6]	C	T	2.716e^-4	0.958	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16681785	X_16681785_SNP [dm3] X_16787752_SNP [dm6]	T	G	2.717e^-4	0.958	START_GAINED Sap30 UTR_5_PRIME Sap30 UPSTREAM CG9609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9881569	2R_9881569_SNP [dm3] 2R_13994064_SNP [dm6]	A	G	2.717e^-4	0.958	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	7225630	X_7225630_SNP [dm3] X_7331597_SNP [dm6]	T	G	2.718e^-4	0.958	NON_SYNONYMOUS_CODING CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
2L	12992797	2L_12992797_SNP [dm3] 2L_12992797_SNP [dm6]	A	T	2.718e^-4	0.958	DOWNSTREAM CG12404 INTERGENIC
X	10975478	X_10975478_SNP [dm3] X_11081445_SNP [dm6]	C	T	2.727e^-4	0.958	INTRON sev
3L	9811252	3L_9811252_SNP [dm3] 3L_9818152_SNP [dm6]	G	A	2.735e^-4	0.958	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
3R	6721464	3R_6721464_SNP [dm3] 3R_10895742_SNP [dm6]	A	G	2.748e^-4	0.958	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	7648104	2R_7648104_SNP [dm3] 2R_11760599_SNP [dm6]	G	A	2.751e^-4	0.958	INTRON ths
2L	6650907	2L_6650907_SNP [dm3] 2L_6650907_SNP [dm6]	G	A	2.753e^-4	0.958	SYNONYMOUS_CODING Tango1	TF binding site BDTNP1_TFBS_dl
X	12354941	X_12354941_SNP [dm3] X_12460908_SNP [dm6]	C	G	2.755e^-4	0.958	INTRON Rab40
2R	11261442	2R_11261442_SNP [dm3] 2R_15373937_SNP [dm6]	A	T	2.765e^-4	0.958	UPSTREAM CR43276 DOWNSTREAM CR43105 EXON CR43275	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	5226821	2L_5226821_SNP [dm3] 2L_5226821_SNP [dm6]	C	T	2.773e^-4	0.958	INTRON tkv
3R	7680456	3R_7680456_SNP [dm3] 3R_11854734_SNP [dm6]	C	G	2.779e^-4	0.958	INTRON CG6959
2L	906475	2L_906475_SNP [dm3] 2L_906475_SNP [dm6]	G	A	2.780e^-4	0.958	INTERGENIC
3R	19391668	3R_19391668_SNP [dm3] 3R_23565946_SNP [dm6]	A	G	2.781e^-4	0.958	INTRON beat-IV
3L	10742523	3L_10742523_SNP [dm3] 3L_10749423_SNP [dm6]	T	G	2.783e^-4	0.958	INTERGENIC
3R	14284734	3R_14284734_SNP [dm3] 3R_18459012_SNP [dm6]	A	T	2.788e^-4	0.958	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16589282	3R_16589282_SNP [dm3] 3R_20763560_SNP [dm6]	T	G	2.792e^-4	0.958	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4571214	3R_4571214_SNP [dm3] 3R_8745492_SNP [dm6]	A	C	2.800e^-4	0.958	START_GAINED CG9801 UTR_5_PRIME CG9801 INTRON CG9801
2L	19422568	2L_19422568_SNP [dm3] 2L_19422568_SNP [dm6]	C	T	2.805e^-4	0.958	INTRON Pax
2R	8515640	2R_8515640_SNP [dm3] 2R_12628135_SNP [dm6]	A	C	2.810e^-4	0.958	DOWNSTREAM muskelin INTRON CG17760
3R	14083357	3R_14083357_SNP [dm3] 3R_18257635_SNP [dm6]	C	G	2.812e^-4	0.958	UTR_3_PRIME moi & 1 other
3L	18149571	3L_18149571_SNP [dm3] 3L_18156471_SNP [dm6]	G	A	2.813e^-4	0.958	SYNONYMOUS_CODING CG13699
3L	18248294	3L_18248294_SNP [dm3] 3L_18255194_SNP [dm6]	T	C	2.814e^-4	0.958	INTERGENIC
2L	19890408	2L_19890408_SNP [dm3] 2L_19890408_SNP [dm6]	G	A	2.815e^-4	0.958	SYNONYMOUS_CODING CG10481 INTRON sick
3L	2885483	3L_2885483_SNP [dm3] 3L_2885483_SNP [dm6]	A	G	2.827e^-4	0.958	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2786796	3L_2786796_SNP [dm3] 3L_2786796_SNP [dm6]	T	A	2.829e^-4	0.958	UTR_3_PRIME CG43444 DOWNSTREAM pgant6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26125305	3R_26125305_SNP [dm3] 3R_30299583_SNP [dm6]	C	T	2.836e^-4	0.958	INTRON hdc
3R	7674958	3R_7674958_SNP [dm3] 3R_11849236_SNP [dm6]	C	T	2.840e^-4	0.958	INTRON CG6959
3L	11637434	3L_11637434_SNP [dm3] 3L_11644334_SNP [dm6]	G	A	2.848e^-4	0.958	SYNONYMOUS_CODING CG6071
3L	11573198	3L_11573198_INS [dm3] 3L_11580098_INS [dm6]	A	AAC	2.849e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
3L	11573203	3L_11573203_INS [dm3] 3L_11580103_INS [dm6]	T	TATAG	2.849e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
X	8125873	X_8125873_SNP [dm3] X_8231840_SNP [dm6]	A	T	2.853e^-4	0.958	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19377269	2L_19377269_SNP [dm3] 2L_19377269_SNP [dm6]	A	C	2.856e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	16524233	X_16524233_SNP [dm3] X_16630200_SNP [dm6]	G	A	2.870e^-4	0.958	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2141795	3L_2141795_SNP [dm3] 3L_2141795_SNP [dm6]	A	T	2.871e^-4	0.958	INTRON zormin	TF binding site mE1_TFBS_inv
3R	10201032	3R_10201032_SNP [dm3] 3R_14375310_SNP [dm6]	A	T	2.873e^-4	0.958	DOWNSTREAM CR44943 INTERGENIC
3L	5817898	3L_5817898_SNP [dm3] 3L_5824798_SNP [dm6]	T	C	2.898e^-4	0.958	INTRON vn	TF binding site mE1_TFBS_HSA
3L	5817904	3L_5817904_SNP [dm3] 3L_5824804_SNP [dm6]	A	T	2.898e^-4	0.958	INTRON vn	TF binding site mE1_TFBS_HSA
2L	16737399	2L_16737399_SNP [dm3] 2L_16737399_SNP [dm6]	G	A	2.900e^-4	0.958	SYNONYMOUS_CODING glu	TF binding site mE1_TFBS_sens
X	10500604	X_10500604_SNP [dm3] X_10606571_SNP [dm6]	C	T	2.904e^-4	0.958	SYNONYMOUS_CODING CG43347
2R	18588614	2R_18588614_SNP [dm3] 2R_22701109_SNP [dm6]	T	A	2.905e^-4	0.958	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	13623108	2L_13623108_SNP [dm3] 2L_13623108_SNP [dm6]	C	T	2.908e^-4	0.958	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3243175	3R_3243175_SNP [dm3] 3R_7417453_SNP [dm6]	T	A	2.910e^-4	0.958	INTERGENIC
3L	9945600	3L_9945600_SNP [dm3] 3L_9952500_SNP [dm6]	T	G	2.913e^-4	0.958	INTRON CG34356
3L	14316467	3L_14316467_DEL [dm3] 3L_14323367_DEL [dm6]	AATAAG	A	2.918e^-4	0.958	INTRON fz & 1 other
3L	3344311	3L_3344311_SNP [dm3] 3L_3344311_SNP [dm6]	T	C	2.931e^-4	0.958	INTRON kst
2R	7547319	2R_7547319_SNP [dm3] 2R_11659814_SNP [dm6]	C	G	2.934e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12664294	2R_12664294_SNP [dm3] 2R_16776789_SNP [dm6]	C	T	2.944e^-4	0.958	INTERGENIC
3L	7895491	3L_7895491_INS [dm3] 3L_7902391_INS [dm6]	C	CATTGGCAGTTGC...	2.950e^-4	0.958	INTRON pbl
2L	20387692	2L_20387692_SNP [dm3] 2L_20387692_SNP [dm6]	C	T	2.951e^-4	0.958	INTRON CG10947	TF binding site mE1_TFBS_cad
3R	11827672	3R_11827672_SNP [dm3] 3R_16001950_SNP [dm6]	G	A	2.955e^-4	0.958	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4025085	2L_4025085_SNP [dm3] 2L_4025085_SNP [dm6]	G	A	2.957e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19224465	X_19224465_SNP [dm3] X_19330432_SNP [dm6]	C	A	2.960e^-4	0.958	INTRON nAChRalpha7
3L	7018019	3L_7018019_SNP [dm3] 3L_7024919_SNP [dm6]	G	A	2.963e^-4	0.958	DOWNSTREAM CG17744 INTRON Mp
2L	16770218	2L_16770218_SNP [dm3] 2L_16770218_SNP [dm6]	T	A	2.966e^-4	0.958	INTRON Mhc
2L	9613850	2L_9613850_SNP [dm3] 2L_9613850_SNP [dm6]	G	A	2.966e^-4	0.958	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
X	11172363	X_11172363_SNP [dm3] X_11278330_SNP [dm6]	A	G	2.977e^-4	0.958	INTRON CG44422
2L	9276629	2L_9276629_DEL [dm3] 2L_9276629_DEL [dm6]	CTTGC	C	2.978e^-4	0.958	INTRON Ggamma30A
2R	1227192	2R_1227192_SNP [dm3] 2R_5339687_SNP [dm6]	A	C	2.984e^-4	0.958	DOWNSTREAM CG10465 INTERGENIC	TF binding site mE1_TFBS_sbb
2R	19254055	2R_19254055_SNP [dm3] 2R_23366532_SNP [dm6]	G	A	2.985e^-4	0.958	UPSTREAM Ice1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	5603459	X_5603459_SNP [dm3] X_5709426_SNP [dm6]	A	G	2.987e^-4	0.958	SYNONYMOUS_CODING CG33080 DOWNSTREAM CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	9305071	3L_9305071_SNP [dm3] 3L_9311971_SNP [dm6]	T	C	2.989e^-4	0.958	INTERGENIC
X	9063427	X_9063427_INS [dm3] X_9169394_INS [dm6]	C	CCAAATGC	2.990e^-4	0.958	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3659367	2L_3659367_SNP [dm3] 2L_3659367_SNP [dm6]	A	T	2.990e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18964531	2R_18964531_SNP [dm3] 2R_23077008_SNP [dm6]	T	C	2.992e^-4	0.958	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	14571755	3L_14571755_SNP [dm3] 3L_14578655_SNP [dm6]	C	T	2.992e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	13141992	X_13141992_SNP [dm3] X_13247959_SNP [dm6]	A	G	2.996e^-4	0.958	INTRON mew
3L	13209070	3L_13209070_SNP [dm3] 3L_13215970_SNP [dm6]	G	A	3.005e^-4	0.958	UPSTREAM CR43914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5374018	2L_5374018_INS [dm3] 2L_5374018_INS [dm6]	C	CTCT	3.006e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_inv
X	6529113	X_6529113_SNP [dm3] X_6635080_SNP [dm6]	T	C	3.011e^-4	0.958	SYNONYMOUS_CODING CG14443 INTRON pigs
X	13141649	X_13141649_SNP [dm3] X_13247616_SNP [dm6]	G	A	3.015e^-4	0.958	INTRON mew
2L	3103702	2L_3103702_SNP [dm3] 2L_3103702_SNP [dm6]	T	C	3.020e^-4	0.958	INTRON toc
2R	14926496	2R_14926496_SNP [dm3] 2R_19038991_SNP [dm6]	G	A	3.024e^-4	0.958	INTERGENIC
2R	13367189	2R_13367189_SNP [dm3] 2R_17479684_SNP [dm6]	A	T	3.039e^-4	0.958	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12280085	3L_12280085_SNP [dm3] 3L_12286985_SNP [dm6]	G	A	3.077e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14927050	3L_14927050_SNP [dm3] 3L_14933950_SNP [dm6]	C	G	3.086e^-4	0.958	INTRON DCX-EMAP
2R	17984534	2R_17984534_SNP [dm3] 2R_22097029_SNP [dm6]	G	A	3.087e^-4	0.958	INTRON CG11073
2R	12571798	2R_12571798_SNP [dm3] 2R_16684293_SNP [dm6]	T	A	3.088e^-4	0.958	UPSTREAM CG30463 INTRON CG30463
3R	17489600	3R_17489600_SNP [dm3] 3R_21663878_SNP [dm6]	A	G	3.090e^-4	0.958	UPSTREAM CG6353 & 1 other INTERGENIC
2L	1554178	2L_1554178_SNP [dm3] 2L_1554178_SNP [dm6]	C	G	3.091e^-4	0.958	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8013144	2L_8013144_SNP [dm3] 2L_8013144_SNP [dm6]	T	G	3.094e^-4	0.958	INTRON Tg
2R	6568115	2R_6568115_SNP [dm3] 2R_10680610_SNP [dm6]	A	C	3.095e^-4	0.958	INTRON stan	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	623374	2L_623374_SNP [dm3] 2L_623374_SNP [dm6]	A	G	3.103e^-4	0.958	DOWNSTREAM CR44798 EXON CR44797
3R	19126665	3R_19126665_SNP [dm3] 3R_23300943_SNP [dm6]	A	C	3.117e^-4	0.958	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8519153	2R_8519153_SNP [dm3] 2R_12631648_SNP [dm6]	A	G	3.137e^-4	0.958	INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9613697	2L_9613697_SNP [dm3] 2L_9613697_SNP [dm6]	A	T	3.142e^-4	0.958	DOWNSTREAM gcm2 INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14553631	2R_14553631_SNP [dm3] 2R_18666126_SNP [dm6]	T	C	3.152e^-4	0.958	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7547295	2R_7547295_SNP [dm3] 2R_11659790_SNP [dm6]	A	G	3.154e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19416768	2L_19416768_SNP [dm3] 2L_19416768_SNP [dm6]	T	C	3.155e^-4	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2R	12113823	2R_12113823_SNP [dm3] 2R_16226318_SNP [dm6]	C	A	3.157e^-4	0.958	UPSTREAM CG15706 & 1 other INTRON CG15706
X	12797315	X_12797315_SNP [dm3] X_12903282_SNP [dm6]	G	A	3.167e^-4	0.958	UPSTREAM CG4407 DOWNSTREAM CG4404 INTRON CG4407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15287177	3L_15287177_SNP [dm3] 3L_15294077_SNP [dm6]	C	T	3.170e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_jumu
3R	21183936	3R_21183936_SNP [dm3] 3R_25358214_SNP [dm6]	C	T	3.179e^-4	0.958	UPSTREAM CG11913 INTRON Fur1
2R	10890973	2R_10890973_SNP [dm3] 2R_15003468_SNP [dm6]	G	A	3.180e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16241491	2R_16241491_SNP [dm3] 2R_20353986_SNP [dm6]	A	T	3.185e^-4	0.958	DOWNSTREAM CG11192 INTERGENIC
2R	14955400	2R_14955400_SNP [dm3] 2R_19067895_SNP [dm6]	A	C	3.188e^-4	0.958	INTRON 5-HT1A
X	7244155	X_7244155_SNP [dm3] X_7350122_SNP [dm6]	T	C	3.190e^-4	0.958	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9416545	2R_9416545_SNP [dm3] 2R_13529040_SNP [dm6]	A	G	3.192e^-4	0.958	INTRON Vmat
X	11623655	X_11623655_SNP [dm3] X_11729622_SNP [dm6]	T	A	3.216e^-4	0.958	UPSTREAM inaF-D INTRON CG15221 & 3 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16968896	3L_16968896_SNP [dm3] 3L_16975796_SNP [dm6]	G	A	3.223e^-4	0.958	UPSTREAM Exn INTRON Exn
3L	11573201	3L_11573201_SNP [dm3] 3L_11580101_SNP [dm6]	A	G	3.235e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2L	20087134	2L_20087134_SNP [dm3] 2L_20087134_SNP [dm6]	T	C	3.239e^-4	0.958	INTRON neb
2L	13622680	2L_13622680_INS [dm3] 2L_13622680_INS [dm6]	T	TG	3.240e^-4	0.958	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16801695	2L_16801695_SNP [dm3] 2L_16801695_SNP [dm6]	C	A	3.245e^-4	0.958	DOWNSTREAM CG13280 & 1 other INTERGENIC
2R	1231482	2R_1231482_INS [dm3] 2R_5343977_INS [dm6]	C	CCCACGAATGTCTTTGT...	3.246e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	7674894	3R_7674894_SNP [dm3] 3R_11849172_SNP [dm6]	G	A	3.251e^-4	0.958	INTRON CG6959
3R	8274757	3R_8274757_SNP [dm3] 3R_12449035_SNP [dm6]	G	A	3.254e^-4	0.958	UTR_3_PRIME CG5538 UPSTREAM CG18549	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	7680537	3R_7680537_SNP [dm3] 3R_11854815_SNP [dm6]	A	C	3.263e^-4	0.958	INTRON CG6959
2L	19332704	2L_19332704_SNP [dm3] 2L_19332704_SNP [dm6]	G	A	3.263e^-4	0.958	INTERGENIC
3R	12361322	3R_12361322_SNP [dm3] 3R_16535600_SNP [dm6]	G	T	3.264e^-4	0.958	INTRON CG42342
X	19179557	X_19179557_SNP [dm3] X_19285524_SNP [dm6]	A	G	3.268e^-4	0.958	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_HSA
2R	18712375	2R_18712375_SNP [dm3] 2R_22824852_SNP [dm6]	A	C	3.269e^-4	0.958	UPSTREAM CG30274 & 1 other INTRON CG42284
2L	4098598	2L_4098598_SNP [dm3] 2L_4098598_SNP [dm6]	T	C	3.290e^-4	0.958	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	20080050	3L_20080050_SNP [dm3] 3L_20086950_SNP [dm6]	G	C	3.297e^-4	0.958	INTRON sNPF-R
3L	15159079	3L_15159079_INS [dm3] 3L_15165979_INS [dm6]	A	CT	3.299e^-4	0.958	INTERGENIC
2L	14934813	2L_14934813_SNP [dm3] 2L_14934813_SNP [dm6]	T	C	3.309e^-4	0.958	INTRON CG42313
3L	10958037	3L_10958037_SNP [dm3] 3L_10964937_SNP [dm6]	C	A	3.310e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3988213	2L_3988213_SNP [dm3] 2L_3988213_SNP [dm6]	T	A	3.312e^-4	0.958	INTRON fred
X	7244039	X_7244039_SNP [dm3] X_7350006_SNP [dm6]	T	G	3.313e^-4	0.958	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16795385	2L_16795385_SNP [dm3] 2L_16795385_SNP [dm6]	C	T	3.318e^-4	0.958	SYNONYMOUS_CODING Ugt36Ba
3R	14450948	3R_14450948_SNP [dm3] 3R_18625226_SNP [dm6]	A	T	3.325e^-4	0.958	INTRON qin
3R	7296224	3R_7296224_SNP [dm3] 3R_11470502_SNP [dm6]	G	A	3.328e^-4	0.958	INTERGENIC
2L	18657455	2L_18657455_SNP [dm3] 2L_18657455_SNP [dm6]	A	T	3.337e^-4	0.958	INTRON MESR3
3L	15069514	3L_15069514_SNP [dm3] 3L_15076414_SNP [dm6]	G	A	3.338e^-4	0.958	DOWNSTREAM Or71a INTRON cp309
3R	20352941	3R_20352941_SNP [dm3] 3R_24527219_SNP [dm6]	A	T	3.342e^-4	0.958	SYNONYMOUS_CODING CG13618 UPSTREAM CG6607
3R	20352944	3R_20352944_SNP [dm3] 3R_24527222_SNP [dm6]	A	G	3.348e^-4	0.958	SYNONYMOUS_CODING CG13618 UPSTREAM CG6607
2R	7547296	2R_7547296_SNP [dm3] 2R_11659791_SNP [dm6]	A	T	3.350e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19359382	2L_19359382_SNP [dm3] 2L_19359382_SNP [dm6]	T	A	3.352e^-4	0.958	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19416739	2L_19416739_SNP [dm3] 2L_19416739_SNP [dm6]	A	T	3.353e^-4	0.958	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	8664729	2L_8664729_SNP [dm3] 2L_8664729_SNP [dm6]	C	A	3.355e^-4	0.958	INTRON Sema-1a
3L	12331959	3L_12331959_SNP [dm3] 3L_12338859_SNP [dm6]	G	A	3.359e^-4	0.958	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19893584	2L_19893584_SNP [dm3] 2L_19893584_SNP [dm6]	G	A	3.365e^-4	0.958	INTRON sick
2L	6651189	2L_6651189_SNP [dm3] 2L_6651189_SNP [dm6]	A	T	3.366e^-4	0.958	NON_SYNONYMOUS_CODING Tango1	TF binding site mE1_TFBS_cad
2L	14330304	2L_14330304_SNP [dm3] 2L_14330304_SNP [dm6]	C	T	3.368e^-4	0.958	INTRON ms_2_34Fe	TF binding site mE1_TFBS_cad
3L	15922271	3L_15922271_SNP [dm3] 3L_15929171_SNP [dm6]	A	T	3.373e^-4	0.958	INTRON Pka-C3
3L	13292316	3L_13292316_SNP [dm3] 3L_13299216_SNP [dm6]	T	A	3.380e^-4	0.958	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3909705	2L_3909705_SNP [dm3] 2L_3909705_SNP [dm6]	T	C	3.381e^-4	0.958	INTRON fred
3L	14618873	3L_14618873_SNP [dm3] 3L_14625773_SNP [dm6]	G	A	3.383e^-4	0.958	INTRON CG9628	TF binding site BDTNP1_TFBS_z
2L	18018719	2L_18018719_SNP [dm3] 2L_18018719_SNP [dm6]	A	G	3.383e^-4	0.958	INTRON rdo
X	3229669	X_3229669_SNP [dm3] X_3335636_SNP [dm6]	G	A	3.386e^-4	0.958	INTRON CR44886 & 1 other
2L	13622359	2L_13622359_SNP [dm3] 2L_13622359_SNP [dm6]	A	G	3.393e^-4	0.958	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8069799	X_8069799_SNP [dm3] X_8175766_SNP [dm6]	C	T	3.402e^-4	0.958	SYNONYMOUS_CODING slpr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25266612	3R_25266612_SNP [dm3] 3R_29440890_SNP [dm6]	G	T	3.424e^-4	0.958	INTRON Ptp99A
3L	5820808	3L_5820808_SNP [dm3] 3L_5827708_SNP [dm6]	G	A	3.433e^-4	0.958	INTRON vn
2R	19621379	2R_19621379_SNP [dm3] 2R_23733856_SNP [dm6]	A	T	3.443e^-4	0.958	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other
3L	10958137	3L_10958137_SNP [dm3] 3L_10965037_SNP [dm6]	C	T	3.444e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7225915	2L_7225915_SNP [dm3] 2L_7225915_SNP [dm6]	G	A	3.452e^-4	0.958	DOWNSTREAM Ndae1 INTRON Ndae1
3L	3818451	3L_3818451_SNP [dm3] 3L_3818451_SNP [dm6]	C	T	3.457e^-4	0.958	UPSTREAM enc DOWNSTREAM Scsalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9423915	2L_9423915_SNP [dm3] 2L_9423915_SNP [dm6]	A	C	3.475e^-4	0.958	NON_SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
3R	16578863	3R_16578863_SNP [dm3] 3R_20753141_SNP [dm6]	T	A	3.486e^-4	0.958	INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7547257	2R_7547257_SNP [dm3] 2R_11659752_SNP [dm6]	A	T	3.488e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20073349	3L_20073349_SNP [dm3] 3L_20080249_SNP [dm6]	A	T	3.505e^-4	0.958	INTRON sNPF-R
3L	20134815	3L_20134815_SNP [dm3] 3L_20141715_SNP [dm6]	C	A	3.507e^-4	0.958	INTERGENIC
3L	10036113	3L_10036113_SNP [dm3] 3L_10043013_SNP [dm6]	T	A	3.510e^-4	0.958	INTRON dpr6
2R	800295	2R_800295_SNP [dm3] 2R_4912790_SNP [dm6]	G	A	3.530e^-4	0.958	INTERGENIC	transposable element FlyBase
2L	14697578	2L_14697578_SNP [dm3] 2L_14697578_SNP [dm6]	C	T	3.535e^-4	0.958	INTERGENIC
2L	13730781	2L_13730781_SNP [dm3] 2L_13730781_SNP [dm6]	A	C	3.549e^-4	0.958	INTERGENIC
X	1444060	X_1444060_SNP [dm3] X_1550027_SNP [dm6]	A	G	3.556e^-4	0.958	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14363749	2L_14363749_SNP [dm3] 2L_14363749_SNP [dm6]	A	C	3.566e^-4	0.958	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1295150	2L_1295150_SNP [dm3] 2L_1295150_SNP [dm6]	T	C	3.570e^-4	0.958	UTR_3_PRIME robo3 DOWNSTREAM robo3
2L	16776799	2L_16776799_SNP [dm3] 2L_16776799_SNP [dm6]	T	A	3.573e^-4	0.958	INTRON Mhc
3R	26872108	3R_26872108_SNP [dm3] 3R_31046386_SNP [dm6]	C	T	3.581e^-4	0.958	NON_SYNONYMOUS_CODING CanA1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9389029	2L_9389029_SNP [dm3] 2L_9389029_SNP [dm6]	T	G	3.588e^-4	0.958	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1776038	3R_1776038_SNP [dm3] 3R_5950316_SNP [dm6]	C	T	3.591e^-4	0.958	INTRON CG34113
2R	10532234	2R_10532234_INS [dm3] 2R_14644729_INS [dm6]	T	TA	3.591e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12425006	2R_12425006_SNP [dm3] 2R_16537501_SNP [dm6]	C	T	3.593e^-4	0.958	DOWNSTREAM loopin-1 INTERGENIC
2L	5911035	2L_5911035_SNP [dm3] 2L_5911035_SNP [dm6]	T	C	3.605e^-4	0.958	UPSTREAM CG14000 INTRON bchs
X	16681780	X_16681780_SNP [dm3] X_16787747_SNP [dm6]	C	T	3.606e^-4	0.958	UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11842345	3L_11842345_SNP [dm3] 3L_11849245_SNP [dm6]	G	A	3.607e^-4	0.958	INTERGENIC
3R	17490403	3R_17490403_SNP [dm3] 3R_21664681_SNP [dm6]	C	T	3.611e^-4	0.958	INTRON CG15497	TF binding site mE1_TFBS_bab1
2R	5972469	2R_5972469_SNP [dm3] 2R_10084964_SNP [dm6]	G	A	3.615e^-4	0.958	UPSTREAM CG2269 DOWNSTREAM egr & 1 other INTERGENIC
3L	15152105	3L_15152105_SNP [dm3] 3L_15159005_SNP [dm6]	C	T	3.631e^-4	0.958	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	10503429	X_10503429_SNP [dm3] X_10609396_SNP [dm6]	C	T	3.635e^-4	0.958	INTRON CG43347
2L	2838289	2L_2838289_SNP [dm3] 2L_2838289_SNP [dm6]	G	T	3.635e^-4	0.958	UPSTREAM Cpr23B & 1 other INTERGENIC
3R	16585668	3R_16585668_DEL [dm3] 3R_20759946_DEL [dm6]	AGTTTGG	A	3.637e^-4	0.958	INTRON Syp & 1 other
2L	10063480	2L_10063480_SNP [dm3] 2L_10063480_SNP [dm6]	C	T	3.640e^-4	0.958	DOWNSTREAM CG44153 INTRON Spn31A	TF binding site mE1_TFBS_chinmo
3L	15152490	3L_15152490_SNP [dm3] 3L_15159390_SNP [dm6]	G	A	3.640e^-4	0.958	SYNONYMOUS_CODING Prp31 UPSTREAM Msh6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8935167	3R_8935167_SNP [dm3] 3R_13109445_SNP [dm6]	G	C	3.650e^-4	0.958	INTRON timeout
3L	12086681	3L_12086681_SNP [dm3] 3L_12093581_SNP [dm6]	T	A	3.656e^-4	0.958	INTERGENIC
3L	5820311	3L_5820311_SNP [dm3] 3L_5827211_SNP [dm6]	G	C	3.659e^-4	0.958	INTRON vn	TF binding site mE1_TFBS_chinmo
2L	4025075	2L_4025075_SNP [dm3] 2L_4025075_SNP [dm6]	T	C	3.669e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4616297	3R_4616297_DEL [dm3] 3R_8790575_DEL [dm6]	GATGT	G	3.671e^-4	0.958	UTR_5_PRIME Pif1B & 1 other INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15713742	3L_15713742_SNP [dm3] 3L_15720642_SNP [dm6]	T	C	3.681e^-4	0.958	DOWNSTREAM CG42570 & 1 other INTERGENIC
3R	26278208	3R_26278208_SNP [dm3] 3R_30452486_SNP [dm6]	A	C	3.682e^-4	0.958	INTRON aralar1
3L	2205119	3L_2205119_SNP [dm3] 3L_2205119_SNP [dm6]	C	A	3.686e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	6623270	2R_6623270_SNP [dm3] 2R_10735765_SNP [dm6]	A	G	3.687e^-4	0.958	START_GAINED CG7220 UTR_5_PRIME CG7220 INTRON CG7220
3R	21050025	3R_21050025_SNP [dm3] 3R_25224303_SNP [dm6]	G	T	3.688e^-4	0.958	UTR_3_PRIME Cad96Cb DOWNSTREAM CG11851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9941928	3L_9941928_SNP [dm3] 3L_9948828_SNP [dm6]	G	T	3.693e^-4	0.958	INTRON CG34356
3R	18565847	3R_18565847_SNP [dm3] 3R_22740125_SNP [dm6]	T	G	3.693e^-4	0.958	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9274503	2L_9274503_SNP [dm3] 2L_9274503_SNP [dm6]	C	T	3.705e^-4	0.958	INTRON Ggamma30A
3L	10955990	3L_10955990_INS [dm3] 3L_10962890_INS [dm6]	A	AG	3.705e^-4	0.958	DOWNSTREAM CR45249 INTERGENIC
X	20834995	X_20834995_SNP [dm3] X_20963968_SNP [dm6]	G	T	3.708e^-4	0.958	UPSTREAM Ser6 DOWNSTREAM CG1304 INTERGENIC
3R	9104581	3R_9104581_SNP [dm3] 3R_13278859_SNP [dm6]	G	C	3.712e^-4	0.958	UPSTREAM CG8630 INTERGENIC
3R	21479852	3R_21479852_SNP [dm3] 3R_25654130_SNP [dm6]	G	A	3.715e^-4	0.958	SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
2L	19424420	2L_19424420_SNP [dm3] 2L_19424420_SNP [dm6]	T	G	3.726e^-4	0.958	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	21048326	X_21048326_SNP [dm3] X_21177299_SNP [dm6]	G	A	3.743e^-4	0.958	INTERGENIC
3L	11523496	3L_11523496_SNP [dm3] 3L_11530396_SNP [dm6]	A	C	3.754e^-4	0.958	INTRON Mob2
3R	7677183	3R_7677183_SNP [dm3] 3R_11851461_SNP [dm6]	G	A	3.763e^-4	0.958	INTRON CG6959	TF binding site mE1_TFBS_Trl
X	7036200	X_7036200_SNP [dm3] X_7142167_SNP [dm6]	C	T	3.767e^-4	0.958	INTRON CG9650
2L	20514627	2L_20514627_SNP [dm3] 2L_20514627_SNP [dm6]	C	T	3.772e^-4	0.958	DOWNSTREAM CR45702 INTERGENIC
3L	11155957	3L_11155957_SNP [dm3] 3L_11162857_SNP [dm6]	A	T	3.777e^-4	0.958	UTR_3_PRIME CG32082 DOWNSTREAM CR43989 INTRON CG32082	TF binding site mE1_TFBS_cad
3L	14441441	3L_14441441_SNP [dm3] 3L_14448341_SNP [dm6]	A	T	3.778e^-4	0.958	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	16609943	2R_16609943_SNP [dm3] 2R_20722438_SNP [dm6]	T	C	3.784e^-4	0.958	UPSTREAM CR44660 INTRON dpr
3L	15069883	3L_15069883_SNP [dm3] 3L_15076783_SNP [dm6]	G	C	3.786e^-4	0.958	DOWNSTREAM Or71a INTRON cp309
2R	19510212	2R_19510212_SNP [dm3] 2R_23622689_SNP [dm6]	T	C	3.787e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13367344	2R_13367344_SNP [dm3] 2R_17479839_SNP [dm6]	G	A	3.787e^-4	0.958	NON_SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20119874	3L_20119874_SNP [dm3] 3L_20126774_SNP [dm6]	C	T	3.787e^-4	0.958	UPSTREAM CG7365 INTRON CG7365
X	6664651	X_6664651_SNP [dm3] X_6770618_SNP [dm6]	G	T	3.808e^-4	0.958	UTR_3_PRIME CG14438 UPSTREAM COQ7 DOWNSTREAM shf & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	2482557	2L_2482557_SNP [dm3] 2L_2482557_SNP [dm6]	T	C	3.815e^-4	0.958	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	13378219	2R_13378219_SNP [dm3] 2R_17490714_SNP [dm6]	T	C	3.816e^-4	0.958	INTRON NT5E-2
2L	11092529	2L_11092529_SNP [dm3] 2L_11092529_SNP [dm6]	C	T	3.820e^-4	0.958	INTRON CG4705
2R	17723663	2R_17723663_SNP [dm3] 2R_21836158_SNP [dm6]	G	A	3.832e^-4	0.958	SYNONYMOUS_CODING CG4377
X	12215661	X_12215661_SNP [dm3] X_12321628_SNP [dm6]	C	T	3.835e^-4	0.958	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11015610	2L_11015610_SNP [dm3] 2L_11015610_SNP [dm6]	C	G	3.836e^-4	0.958	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15986029	3L_15986029_SNP [dm3] 3L_15992929_SNP [dm6]	A	G	3.838e^-4	0.958	UTR_3_PRIME CG5830 DOWNSTREAM Hip14	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16585649	3R_16585649_DEL [dm3] 3R_20759927_DEL [dm6]	ATAGTTTG	A	3.848e^-4	0.958	INTRON Syp & 1 other
3R	16585660	3R_16585660_DEL [dm3] 3R_20759938_DEL [dm6]	ACTCTG	A	3.848e^-4	0.958	INTRON Syp & 1 other
X	14901091	X_14901091_SNP [dm3] X_15007058_SNP [dm6]	A	G	3.866e^-4	0.958	UTR_3_PRIME eag
3R	11170094	3R_11170094_SNP [dm3] 3R_15344372_SNP [dm6]	A	T	3.882e^-4	0.958	INTRON Surf4	TF binding site mE1_TFBS_sens
3R	11170351	3R_11170351_SNP [dm3] 3R_15344629_SNP [dm6]	G	A	3.882e^-4	0.958	SYNONYMOUS_CODING Surf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	4972393	2L_4972393_SNP [dm3] 2L_4972393_SNP [dm6]	A	C	3.884e^-4	0.958	SYNONYMOUS_CODING CG14043 UPSTREAM l_2_05714 INTRON l_2_05714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	9592398	X_9592398_DEL [dm3] X_9698365_DEL [dm6]	GA	G	3.906e^-4	0.958	DOWNSTREAM btd INTERGENIC
X	5933434	X_5933434_SNP [dm3] X_6039401_SNP [dm6]	A	G	3.928e^-4	0.958	UTR_3_PRIME CG5941 UPSTREAM CG5937 DOWNSTREAM CG5941	TF binding site BDTNP1_TFBS_dl
X	12791403	X_12791403_SNP [dm3] X_12897370_SNP [dm6]	A	G	3.931e^-4	0.958	UPSTREAM Pde9 DOWNSTREAM CG32650 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	20835041	X_20835041_SNP [dm3] X_20964014_SNP [dm6]	C	A	3.933e^-4	0.958	UPSTREAM Ser6 DOWNSTREAM CG1304 INTERGENIC
2R	18588170	2R_18588170_SNP [dm3] 2R_22700665_SNP [dm6]	G	C	3.940e^-4	0.958	UPSTREAM robo DOWNSTREAM CG30259 INTRON robo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	20375821	2L_20375821_SNP [dm3] 2L_20375821_SNP [dm6]	G	T	3.943e^-4	0.958	INTERGENIC
3L	16784278	3L_16784278_SNP [dm3] 3L_16791178_SNP [dm6]	G	A	3.944e^-4	0.958	SYNONYMOUS_CODING CG9674 UTR_3_PRIME CG9674	TF binding site mE1_TFBS_cad
2L	3480509	2L_3480509_DEL [dm3] 2L_3480509_DEL [dm6]	AAT	A	3.945e^-4	0.958	DOWNSTREAM Thor & 1 other INTERGENIC
3R	19126666	3R_19126666_SNP [dm3] 3R_23300944_SNP [dm6]	C	G	3.950e^-4	0.958	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7674667	3R_7674667_SNP [dm3] 3R_11848945_SNP [dm6]	A	G	3.952e^-4	0.958	INTRON CG6959
3R	26337537	3R_26337537_SNP [dm3] 3R_30511815_SNP [dm6]	G	A	3.953e^-4	0.958	NON_SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG31524
3R	11169775	3R_11169775_SNP [dm3] 3R_15344053_SNP [dm6]	A	T	3.956e^-4	0.958	UTR_3_PRIME Surf4 UPSTREAM CG6218 DOWNSTREAM Aats-ser
2R	8515298	2R_8515298_SNP [dm3] 2R_12627793_SNP [dm6]	G	C	3.956e^-4	0.958	SYNONYMOUS_CODING CG17760 DOWNSTREAM muskelin
2L	6134532	2L_6134532_SNP [dm3] 2L_6134532_SNP [dm6]	A	C	3.958e^-4	0.958	UPSTREAM CR45719 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8996432	3L_8996432_SNP [dm3] 3L_9003332_SNP [dm6]	C	T	3.959e^-4	0.958	DOWNSTREAM CG5087 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5910819	2L_5910819_SNP [dm3] 2L_5910819_SNP [dm6]	T	A	3.968e^-4	0.958	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da
3R	9086796	3R_9086796_SNP [dm3] 3R_13261074_SNP [dm6]	A	T	3.970e^-4	0.958	INTRON CG11686
2R	16454537	2R_16454537_SNP [dm3] 2R_20567032_SNP [dm6]	T	C	3.981e^-4	0.958	INTRON qsm
3R	26082771	3R_26082771_SNP [dm3] 3R_30257049_SNP [dm6]	C	A	3.982e^-4	0.958	INTERGENIC
2L	6727627	2L_6727627_SNP [dm3] 2L_6727627_SNP [dm6]	T	G	3.986e^-4	0.958	INTRON Liprin-alpha
2L	3659368	2L_3659368_SNP [dm3] 2L_3659368_SNP [dm6]	A	C	4.003e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6626263	3R_6626263_SNP [dm3] 3R_10800541_SNP [dm6]	A	G	4.006e^-4	0.958	SPLICE_SITE_REGION CG14692 INTRON CG14692
2R	10532230	2R_10532230_SNP [dm3] 2R_14644725_SNP [dm6]	T	A	4.007e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11573594	3L_11573594_SNP [dm3] 3L_11580494_SNP [dm6]	G	A	4.007e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 & 1 other INTERGENIC
3L	13206390	3L_13206390_INS [dm3] 3L_13213290_INS [dm6]	T	TTT	4.009e^-4	0.958	UPSTREAM tRNA:CR32127 DOWNSTREAM tRNA:CR32126 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15633063	3R_15633063_SNP [dm3] 3R_19807341_SNP [dm6]	A	C	4.025e^-4	0.958	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19787590	2L_19787590_SNP [dm3] 2L_19787590_SNP [dm6]	G	C	4.036e^-4	0.958	INTRON CdGAPr
3R	3457968	3R_3457968_SNP [dm3] 3R_7632246_SNP [dm6]	T	C	4.038e^-4	0.958	INTRON CG34127
2L	8989407	2L_8989407_SNP [dm3] 2L_8989407_SNP [dm6]	C	G	4.039e^-4	0.958	UTR_5_PRIME rost UPSTREAM rost
3R	7656393	3R_7656393_SNP [dm3] 3R_11830671_SNP [dm6]	G	A	4.040e^-4	0.958	INTRON CG6959
X	16533639	X_16533639_SNP [dm3] X_16639606_SNP [dm6]	A	G	4.042e^-4	0.958	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14571752	3L_14571752_SNP [dm3] 3L_14578652_SNP [dm6]	C	T	4.048e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	15111873	2L_15111873_SNP [dm3] 2L_15111873_SNP [dm6]	G	A	4.049e^-4	0.958	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	21479861	3R_21479861_SNP [dm3] 3R_25654139_SNP [dm6]	G	T	4.052e^-4	0.958	SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
2R	14394685	2R_14394685_SNP [dm3] 2R_18507180_SNP [dm6]	C	G	4.056e^-4	0.958	INTERGENIC
2R	8825002	2R_8825002_SNP [dm3] 2R_12937497_SNP [dm6]	G	A	4.060e^-4	0.958	UPSTREAM CG13322 DOWNSTREAM CG30487 INTRON Sans	TF binding site BDTNP1_TFBS_dl
2R	8825006	2R_8825006_SNP [dm3] 2R_12937501_SNP [dm6]	C	T	4.060e^-4	0.958	UPSTREAM CG13322 DOWNSTREAM CG30487 INTRON Sans	TF binding site BDTNP1_TFBS_dl
2L	13386866	2L_13386866_SNP [dm3] 2L_13386866_SNP [dm6]	T	C	4.070e^-4	0.958	SYNONYMOUS_CODING CG9293 UPSTREAM CG7099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	4.074e^-4	0.958	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	15151939	3L_15151939_SNP [dm3] 3L_15158839_SNP [dm6]	T	A	4.089e^-4	0.958	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	20503340	2L_20503340_SNP [dm3] 2L_20503340_SNP [dm6]	C	T	4.094e^-4	0.958	INTERGENIC
3R	7653032	3R_7653032_SNP [dm3] 3R_11827310_SNP [dm6]	T	C	4.103e^-4	0.958	INTRON CG6959
3L	13182325	3L_13182325_SNP [dm3] 3L_13189225_SNP [dm6]	T	C	4.105e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6797700	X_6797700_SNP [dm3] X_6903667_SNP [dm6]	G	A	4.110e^-4	0.958	INTERGENIC
X	19354166	X_19354166_SNP [dm3] X_19460133_SNP [dm6]	C	A	4.119e^-4	0.958	INTRON kek5
2L	5008719	2L_5008719_SNP [dm3] 2L_5008719_SNP [dm6]	A	G	4.120e^-4	0.958	SYNONYMOUS_CODING Rtnl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3R	21186760	3R_21186760_INS [dm3] 3R_25361038_INS [dm6]	A	AGTTTCCCA	4.128e^-4	0.958	INTRON Fur1	TF binding site mE1_TFBS_inv
3L	15933679	3L_15933679_SNP [dm3] 3L_15940579_SNP [dm6]	C	G	4.129e^-4	0.958	INTRON Pka-C3
2L	17376418	2L_17376418_SNP [dm3] 2L_17376418_SNP [dm6]	T	C	4.134e^-4	0.958	INTRON Lrch	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10742534	3L_10742534_SNP [dm3] 3L_10749434_SNP [dm6]	T	A	4.135e^-4	0.958	INTERGENIC
3L	20134933	3L_20134933_SNP [dm3] 3L_20141833_SNP [dm6]	A	G	4.141e^-4	0.958	INTERGENIC
2R	16582655	2R_16582655_SNP [dm3] 2R_20695150_SNP [dm6]	A	G	4.144e^-4	0.958	INTERGENIC
2R	16633843	2R_16633843_SNP [dm3] 2R_20746338_SNP [dm6]	G	A	4.144e^-4	0.958	INTRON dpr
3L	18180624	3L_18180624_SNP [dm3] 3L_18187524_SNP [dm6]	G	A	4.147e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	20071482	3L_20071482_SNP [dm3] 3L_20078382_SNP [dm6]	C	T	4.151e^-4	0.958	INTRON sNPF-R
3L	2149399	3L_2149399_SNP [dm3] 3L_2149399_SNP [dm6]	C	G	4.157e^-4	0.958	INTRON zormin
2L	6887137	2L_6887137_SNP [dm3] 2L_6887137_SNP [dm6]	A	T	4.168e^-4	0.958	INTRON Nlg2
X	11975677	X_11975677_SNP [dm3] X_12081644_SNP [dm6]	T	G	4.169e^-4	0.958	INTRON CR43960 & 1 other
2L	18006723	2L_18006723_SNP [dm3] 2L_18006723_SNP [dm6]	G	A	4.172e^-4	0.958	UTR_5_PRIME CG5693 UPSTREAM CG42659	TF binding site mE1_TFBS_inv
X	16681736	X_16681736_SNP [dm3] X_16787703_SNP [dm6]	A	C	4.176e^-4	0.958	UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	16586327	3R_16586327_SNP [dm3] 3R_20760605_SNP [dm6]	G	A	4.181e^-4	0.958	INTRON Syp & 1 other	TF binding site mE1_TFBS_sens
3L	10173620	3L_10173620_SNP [dm3] 3L_10180520_SNP [dm6]	C	T	4.185e^-4	0.958	INTRON dpr10
2R	15972866	2R_15972866_SNP [dm3] 2R_20085361_SNP [dm6]	T	C	4.198e^-4	0.958	EXON CR44632
3L	13674890	3L_13674890_SNP [dm3] 3L_13681790_SNP [dm6]	A	G	4.205e^-4	0.958	INTRON bru-3
2L	19889007	2L_19889007_SNP [dm3] 2L_19889007_SNP [dm6]	A	G	4.213e^-4	0.958	INTRON sick
2L	18018246	2L_18018246_SNP [dm3] 2L_18018246_SNP [dm6]	T	A	4.225e^-4	0.958	INTRON rdo
X	14760104	X_14760104_SNP [dm3] X_14866071_SNP [dm6]	A	T	4.244e^-4	0.958	UTR_5_PRIME CG9518 INTRON Flo2
2L	19422615	2L_19422615_SNP [dm3] 2L_19422615_SNP [dm6]	C	G	4.257e^-4	0.958	INTRON Pax
3R	5858078	3R_5858078_SNP [dm3] 3R_10032356_SNP [dm6]	G	T	4.268e^-4	0.958	INTRON Mical
3L	13789600	3L_13789600_SNP [dm3] 3L_13796500_SNP [dm6]	T	C	4.286e^-4	0.958	INTRON bru-3
2L	20301855	2L_20301855_SNP [dm3] 2L_20301855_SNP [dm6]	C	T	4.299e^-4	0.958	INTERGENIC
3L	8571796	3L_8571796_SNP [dm3] 3L_8578696_SNP [dm6]	C	T	4.310e^-4	0.958	UTR_5_PRIME CG43078 UPSTREAM CG43078
2L	18259988	2L_18259988_SNP [dm3] 2L_18259988_SNP [dm6]	T	C	4.324e^-4	0.958	INTRON CG42750
2L	4961144	2L_4961144_SNP [dm3] 2L_4961144_SNP [dm6]	C	T	4.334e^-4	0.958	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17431587	3L_17431587_SNP [dm3] 3L_17438487_SNP [dm6]	G	A	4.340e^-4	0.958	UPSTREAM CG18265 DOWNSTREAM CG32176 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17092896	2R_17092896_SNP [dm3] 2R_21205391_SNP [dm6]	T	C	4.343e^-4	0.958	SYNONYMOUS_CODING Glycogenin INTRON CG44245
3L	3241481	3L_3241481_SNP [dm3] 3L_3241481_SNP [dm6]	G	A	4.346e^-4	0.958	INTERGENIC
3L	9817427	3L_9817427_SNP [dm3] 3L_9824327_SNP [dm6]	T	G	4.350e^-4	0.958	UPSTREAM Ilp5 INTRON CG43897
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	4.351e^-4	0.958	INTRON Mhc
2L	16740554	2L_16740554_INS [dm3] 2L_16740554_INS [dm6]	T	TT	4.362e^-4	0.958	INTRON ChLD3
3R	13050558	3R_13050558_SNP [dm3] 3R_17224836_SNP [dm6]	T	C	4.370e^-4	0.958	INTERGENIC
2L	3909673	2L_3909673_SNP [dm3] 2L_3909673_SNP [dm6]	A	G	4.371e^-4	0.958	INTRON fred
3R	24661240	3R_24661240_SNP [dm3] 3R_28835518_SNP [dm6]	C	G	4.376e^-4	0.958	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	972225	2L_972225_SNP [dm3] 2L_972225_SNP [dm6]	G	T	4.378e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6293820	2R_6293820_SNP [dm3] 2R_10406315_SNP [dm6]	C	T	4.391e^-4	0.958	DOWNSTREAM CG12898 INTRON CG42732
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	4.404e^-4	0.958	INTRON CG8563
3R	16585762	3R_16585762_SNP [dm3] 3R_20760040_SNP [dm6]	G	A	4.406e^-4	0.958	INTRON Syp & 1 other
3R	12034920	3R_12034920_SNP [dm3] 3R_16209198_SNP [dm6]	T	A	4.417e^-4	0.958	UPSTREAM CR45637 & 1 other DOWNSTREAM CR45638 & 1 other INTERGENIC
3L	11024051	3L_11024051_SNP [dm3] 3L_11030951_SNP [dm6]	T	G	4.422e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7547372	2R_7547372_DEL [dm3] 2R_11659867_DEL [dm6]	CAAGTGCAACAGAGTTCA...	C	4.427e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9811468	3L_9811468_SNP [dm3] 3L_9818368_SNP [dm6]	G	T	4.427e^-4	0.958	UPSTREAM CG43897 INTRON CG43897	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7588946	2R_7588946_SNP [dm3] 2R_11701441_SNP [dm6]	A	G	4.428e^-4	0.958	NON_SYNONYMOUS_CODING Ir48b	TF binding site mE1_TFBS_sens
2L	19756985	2L_19756985_SNP [dm3] 2L_19756985_SNP [dm6]	A	G	4.446e^-4	0.958	UPSTREAM CG10631 DOWNSTREAM CG10628 INTERGENIC
2L	17653220	2L_17653220_SNP [dm3] 2L_17653220_SNP [dm6]	T	A	4.452e^-4	0.958	INTRON CadN
3L	5985001	3L_5985001_SNP [dm3] 3L_5991901_SNP [dm6]	C	G	4.458e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19444935	2L_19444935_SNP [dm3] 2L_19444935_SNP [dm6]	C	T	4.477e^-4	0.958	UPSTREAM RanGAP & 1 other INTRON RanGAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
X	8552644	X_8552644_SNP [dm3] X_8658611_SNP [dm6]	A	G	4.485e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20460529	2R_20460529_SNP [dm3] 2R_24573006_SNP [dm6]	T	C	4.493e^-4	0.958	SYNONYMOUS_CODING CG3511	TF binding site mE1_TFBS_cad
2L	9199572	2L_9199572_SNP [dm3] 2L_9199572_SNP [dm6]	G	C	4.505e^-4	0.958	INTRON tai
3L	10361716	3L_10361716_SNP [dm3] 3L_10368616_SNP [dm6]	A	T	4.512e^-4	0.958	INTERGENIC
3L	11453008	3L_11453008_DEL [dm3] 3L_11459908_DEL [dm6]	TT	T	4.520e^-4	0.958	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14377121	3L_14377121_SNP [dm3] 3L_14384021_SNP [dm6]	T	C	4.524e^-4	0.958	DOWNSTREAM CG43120 INTERGENIC
3L	7818560	3L_7818560_SNP [dm3] 3L_7825460_SNP [dm6]	C	A	4.525e^-4	0.958	INTRON Pdp1
3L	15151985	3L_15151985_SNP [dm3] 3L_15158885_SNP [dm6]	A	T	4.526e^-4	0.958	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	13114187	2R_13114187_SNP [dm3] 2R_17226682_SNP [dm6]	T	C	4.528e^-4	0.958	INTRON mbl
X	13067840	X_13067840_SNP [dm3] X_13173807_SNP [dm6]	T	G	4.532e^-4	0.958	INTRON CG34411	TF binding site BDTNP1_TFBS_dl
2L	17562653	2L_17562653_SNP [dm3] 2L_17562653_SNP [dm6]	T	A	4.532e^-4	0.958	INTERGENIC
X	6215095	X_6215095_SNP [dm3] X_6321062_SNP [dm6]	A	C	4.538e^-4	0.958	INTRON CG15894
3L	11573305	3L_11573305_SNP [dm3] 3L_11580205_SNP [dm6]	T	A	4.539e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 INTERGENIC
2L	19363380	2L_19363380_SNP [dm3] 2L_19363380_SNP [dm6]	A	G	4.539e^-4	0.958	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15151987	3L_15151987_SNP [dm3] 3L_15158887_SNP [dm6]	T	A	4.543e^-4	0.958	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	5373020	2L_5373020_SNP [dm3] 2L_5373020_SNP [dm6]	A	G	4.549e^-4	0.958	INTERGENIC
3R	7141239	3R_7141239_SNP [dm3] 3R_11315517_SNP [dm6]	G	T	4.551e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6933301	3R_6933301_SNP [dm3] 3R_11107579_SNP [dm6]	G	T	4.566e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16136010	2L_16136010_SNP [dm3] 2L_16136010_SNP [dm6]	A	G	4.568e^-4	0.958	UPSTREAM CG34168 EXON CR44871
3R	24900533	3R_24900533_SNP [dm3] 3R_29074811_SNP [dm6]	C	T	4.568e^-4	0.958	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18107677	3L_18107677_SNP [dm3] 3L_18114577_SNP [dm6]	T	A	4.569e^-4	0.958	NON_SYNONYMOUS_CODING CG32195 INTRON CG7341
2R	7561409	2R_7561409_SNP [dm3] 2R_11673904_SNP [dm6]	C	A	4.571e^-4	0.958	SYNONYMOUS_CODING Tret1-1 INTRON Roc2
2L	18000829	2L_18000829_SNP [dm3] 2L_18000829_SNP [dm6]	A	G	4.573e^-4	0.958	INTERGENIC
2R	2016200	2R_2016200_SNP [dm3] 2R_6128695_SNP [dm6]	G	T	4.574e^-4	0.958	INTRON EcR
2L	18885333	2L_18885333_SNP [dm3] 2L_18885333_SNP [dm6]	C	G	4.581e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10773031	3L_10773031_SNP [dm3] 3L_10779931_SNP [dm6]	A	T	4.583e^-4	0.958	INTERGENIC
3R	10533641	3R_10533641_SNP [dm3] 3R_14707919_SNP [dm6]	T	C	4.602e^-4	0.958	INTRON kibra
2L	18784758	2L_18784758_SNP [dm3] 2L_18784758_SNP [dm6]	A	T	4.604e^-4	0.958	INTRON ham	TF binding site BDTNP1_TFBS_dl
3R	13973905	3R_13973905_DEL [dm3] 3R_18148183_DEL [dm6]	TGCCGTTGATTT...	T	4.606e^-4	0.958	INTERGENIC
X	8355978	X_8355978_SNP [dm3] X_8461945_SNP [dm6]	T	A	4.610e^-4	0.958	INTRON Es2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	20070766	3L_20070766_SNP [dm3] 3L_20077666_SNP [dm6]	G	C	4.621e^-4	0.958	INTRON sNPF-R
3R	20552035	3R_20552035_SNP [dm3] 3R_24726313_SNP [dm6]	G	A	4.623e^-4	0.958	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18015971	3L_18015971_SNP [dm3] 3L_18022871_SNP [dm6]	A	G	4.623e^-4	0.958	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	7276979	3L_7276979_SNP [dm3] 3L_7283879_SNP [dm6]	G	A	4.625e^-4	0.958	INTRON unc-13-4A
3L	8571220	3L_8571220_SNP [dm3] 3L_8578120_SNP [dm6]	T	C	4.632e^-4	0.958	UTR_5_PRIME CG43078 UPSTREAM CG43078
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	4.635e^-4	0.958	UPSTREAM FucTB & 1 other INTRON FucTB
2L	19892967	2L_19892967_SNP [dm3] 2L_19892967_SNP [dm6]	T	C	4.636e^-4	0.958	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi
2L	19892978	2L_19892978_SNP [dm3] 2L_19892978_SNP [dm6]	T	C	4.636e^-4	0.958	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi
2R	1226288	2R_1226288_SNP [dm3] 2R_5338783_SNP [dm6]	T	C	4.637e^-4	0.958	DOWNSTREAM CG10465 INTERGENIC
2R	6256535	2R_6256535_DEL [dm3] 2R_10369030_DEL [dm6]	CGCTGTGTTGTCGGTACGTG...	C	4.665e^-4	0.958	INTRON CG42732	TF binding site BDTNP1_TFBS_sna
2L	19889002	2L_19889002_SNP [dm3] 2L_19889002_SNP [dm6]	G	A	4.665e^-4	0.958	INTRON sick
2R	10532245	2R_10532245_INS [dm3] 2R_14644740_INS [dm6]	T	TATTTTT	4.672e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21670801	3R_21670801_SNP [dm3] 3R_25845079_SNP [dm6]	A	G	4.675e^-4	0.958	UPSTREAM CR45654 DOWNSTREAM CR45653 INTERGENIC
2L	4346139	2L_4346139_SNP [dm3] 2L_4346139_SNP [dm6]	T	C	4.676e^-4	0.958	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	13589054	2R_13589054_SNP [dm3] 2R_17701549_SNP [dm6]	A	G	4.679e^-4	0.958	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
3L	693062	3L_693062_SNP [dm3] 3L_693062_SNP [dm6]	T	A	4.680e^-4	0.958	UPSTREAM Vti1 DOWNSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10349737	3L_10349737_SNP [dm3] 3L_10356637_SNP [dm6]	T	G	4.687e^-4	0.958	INTRON CR44327
2L	16615850	2L_16615850_SNP [dm3] 2L_16615850_SNP [dm6]	A	G	4.696e^-4	0.958	INTRON CG42389
3L	1471028	3L_1471028_SNP [dm3] 3L_1471028_SNP [dm6]	G	T	4.700e^-4	0.958	UTR_3_PRIME CG32319 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10118106	3R_10118106_SNP [dm3] 3R_14292384_SNP [dm6]	G	A	4.700e^-4	0.958	INTRON CG12207
3L	20132136	3L_20132136_SNP [dm3] 3L_20139036_SNP [dm6]	C	A	4.701e^-4	0.958	DOWNSTREAM CG7328 & 1 other INTERGENIC
3R	17066704	3R_17066704_SNP [dm3] 3R_21240982_SNP [dm6]	G	T	4.716e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs
3R	21077378	3R_21077378_SNP [dm3] 3R_25251656_SNP [dm6]	T	G	4.729e^-4	0.958	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7721291	2R_7721291_SNP [dm3] 2R_11833786_SNP [dm6]	A	T	4.733e^-4	0.958	INTRON Sobp
3L	9247245	3L_9247245_SNP [dm3] 3L_9254145_SNP [dm6]	G	A	4.737e^-4	0.958	INTRON GluRIB
2L	14572093	2L_14572093_DEL [dm3] 2L_14572093_DEL [dm6]	CCATAACATAAGC...	C	4.738e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15152071	3L_15152071_SNP [dm3] 3L_15158971_SNP [dm6]	G	T	4.738e^-4	0.958	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	26334276	3R_26334276_SNP [dm3] 3R_30508554_SNP [dm6]	G	A	4.744e^-4	0.958	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
X	8069805	X_8069805_SNP [dm3] X_8175772_SNP [dm6]	A	G	4.751e^-4	0.958	SYNONYMOUS_CODING slpr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19464991	2R_19464991_SNP [dm3] 2R_23577468_SNP [dm6]	C	T	4.755e^-4	0.958	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3972448	3L_3972448_SNP [dm3] 3L_3972448_SNP [dm6]	G	T	4.764e^-4	0.958	UPSTREAM CG43915 INTERGENIC
2R	19915655	2R_19915655_SNP [dm3] 2R_24028132_SNP [dm6]	G	A	4.776e^-4	0.958	DOWNSTREAM PebIII INTRON HSPC300	TF binding site BDTNP1_TFBS_dl
3L	2680626	3L_2680626_SNP [dm3] 3L_2680626_SNP [dm6]	T	A	4.795e^-4	0.958	INTRON Fife
3R	24022202	3R_24022202_SNP [dm3] 3R_28196480_SNP [dm6]	T	A	4.804e^-4	0.958	INTRON CG34354
2R	14156245	2R_14156245_SNP [dm3] 2R_18268740_SNP [dm6]	T	A	4.805e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17670437	2R_17670437_SNP [dm3] 2R_21782932_SNP [dm6]	C	T	4.808e^-4	0.958	INTERGENIC
2R	18713348	2R_18713348_SNP [dm3] 2R_22825825_SNP [dm6]	C	T	4.822e^-4	0.958	SYNONYMOUS_CODING CG30274 INTRON CG42284
2L	19469264	2L_19469264_INS [dm3] 2L_19469264_INS [dm6]	C	TTCAT	4.822e^-4	0.958	DOWNSTREAM CR45723 EXON CR45722
3R	7681850	3R_7681850_INS [dm3] 3R_11856128_INS [dm6]	A	AGTATAGCA	4.824e^-4	0.958	INTRON CG6959
2R	8517811	2R_8517811_SNP [dm3] 2R_12630306_SNP [dm6]	A	G	4.834e^-4	0.958	SYNONYMOUS_CODING muskelin
3R	16589284	3R_16589284_SNP [dm3] 3R_20763562_SNP [dm6]	C	T	4.843e^-4	0.958	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3106144	2L_3106144_SNP [dm3] 2L_3106144_SNP [dm6]	A	T	4.853e^-4	0.958	INTRON toc	TF binding site mE1_TFBS_Trl
3L	7960068	3L_7960068_SNP [dm3] 3L_7966968_SNP [dm6]	C	T	4.860e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18174446	3L_18174446_SNP [dm3] 3L_18181346_SNP [dm6]	G	C	4.872e^-4	0.958	INTRON W
2L	19424357	2L_19424357_DEL [dm3] 2L_19424357_DEL [dm6]	ATCACTTA	A	4.880e^-4	0.958	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10975531	X_10975531_SNP [dm3] X_11081498_SNP [dm6]	C	G	4.882e^-4	0.958	INTRON sev
3L	11192686	3L_11192686_SNP [dm3] 3L_11199586_SNP [dm6]	T	A	4.890e^-4	0.958	UPSTREAM CG7607 INTRON Plod
3R	17919902	3R_17919902_SNP [dm3] 3R_22094180_SNP [dm6]	C	A	4.890e^-4	0.958	INTRON CG5778	TF binding site mE1_TFBS_run
2L	19890779	2L_19890779_SNP [dm3] 2L_19890779_SNP [dm6]	G	A	4.891e^-4	0.958	NON_SYNONYMOUS_CODING CG10481 INTRON sick
2L	3673503	2L_3673503_SNP [dm3] 2L_3673503_SNP [dm6]	C	A	4.892e^-4	0.958	INTRON CG34340
3L	14872763	3L_14872763_SNP [dm3] 3L_14879663_SNP [dm6]	T	C	4.905e^-4	0.958	INTRON CG17839
3L	9815365	3L_9815365_INS [dm3] 3L_9822265_INS [dm6]	A	AGCTATTCGAAAA...	4.910e^-4	0.958	INTRON CG43897
3R	15739626	3R_15739626_SNP [dm3] 3R_19913904_SNP [dm6]	C	A	4.912e^-4	0.958	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others
X	12953456	X_12953456_SNP [dm3] X_13059423_SNP [dm6]	A	T	4.914e^-4	0.958	INTRON rad
2R	6256670	2R_6256670_SNP [dm3] 2R_10369165_SNP [dm6]	T	C	4.927e^-4	0.958	INTRON CG42732	TF binding site BDTNP1_TFBS_sna
2R	7547309	2R_7547309_SNP [dm3] 2R_11659804_SNP [dm6]	T	C	4.929e^-4	0.958	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6256160	2R_6256160_SNP [dm3] 2R_10368655_SNP [dm6]	C	A	4.940e^-4	0.958	INTRON CG42732
2L	9097413	2L_9097413_SNP [dm3] 2L_9097413_SNP [dm6]	C	A	4.943e^-4	0.958	UPSTREAM CG31609 INTERGENIC
3R	14899277	3R_14899277_SNP [dm3] 3R_19073555_SNP [dm6]	T	A	4.952e^-4	0.958	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	15445162	3L_15445162_SNP [dm3] 3L_15452062_SNP [dm6]	T	A	4.962e^-4	0.958	INTERGENIC
3R	9104834	3R_9104834_SNP [dm3] 3R_13279112_SNP [dm6]	C	T	4.968e^-4	0.958	UPSTREAM CG8630 INTERGENIC
3L	20076031	3L_20076031_SNP [dm3] 3L_20082931_SNP [dm6]	G	A	4.971e^-4	0.958	INTRON sNPF-R
3L	7960070	3L_7960070_SNP [dm3] 3L_7966970_SNP [dm6]	T	G	4.975e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6721525	3R_6721525_SNP [dm3] 3R_10895803_SNP [dm6]	A	G	4.977e^-4	0.958	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	21067440	3L_21067440_SNP [dm3] 3L_21074340_SNP [dm6]	A	T	4.979e^-4	0.958	SYNONYMOUS_CODING siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15609740	3L_15609740_DEL [dm3] 3L_15616640_DEL [dm6]	TA	T	4.988e^-4	0.958	INTRON comm3
2L	3471121	2L_3471121_SNP [dm3] 2L_3471121_SNP [dm6]	A	G	4.992e^-4	0.958	INTRON CG31776
3L	11573614	3L_11573614_INS [dm3] 3L_11580514_INS [dm6]	T	TATTCTTTAT	4.998e^-4	0.958	UPSTREAM CG43390 DOWNSTREAM CG43391 & 1 other INTERGENIC
2L	19777072	2L_19777072_SNP [dm3] 2L_19777072_SNP [dm6]	A	C	4.998e^-4	0.958	INTRON CdGAPr	TF binding site mE1_TFBS_cad
3L	9199822	3L_9199822_SNP [dm3] 3L_9206722_SNP [dm6]	T	C	5.006e^-4	0.958	UPSTREAM Slc45-1 INTRON Slc45-1
3R	11828991	3R_11828991_SNP [dm3] 3R_16003269_SNP [dm6]	A	T	5.008e^-4	0.958	NON_SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
2R	12267682	2R_12267682_DEL [dm3] 2R_16380177_DEL [dm6]	ATAGAAGCACTAGTGTTCTA...	A	5.009e^-4	0.958	UPSTREAM CG43187 & 1 other DOWNSTREAM CR45316 INTERGENIC EXON CR45317
X	16991859	X_16991859_SNP [dm3] X_17097826_SNP [dm6]	A	G	5.013e^-4	0.958	UTR_3_PRIME CG16700 INTRON CG4991
3R	23884181	3R_23884181_INS [dm3] 3R_28058459_INS [dm6]	T	TT	5.016e^-4	0.958	INTRON CG34362
2L	13075266	2L_13075266_SNP [dm3] 2L_13075266_SNP [dm6]	A	T	5.017e^-4	0.958	INTERGENIC
3R	7310526	3R_7310526_SNP [dm3] 3R_11484804_SNP [dm6]	G	A	5.045e^-4	0.958	INTERGENIC
2L	19892980	2L_19892980_SNP [dm3] 2L_19892980_SNP [dm6]	C	T	5.046e^-4	0.958	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi
3R	18377764	3R_18377764_SNP [dm3] 3R_22552042_SNP [dm6]	G	T	5.046e^-4	0.958	INTRON bond & 1 other
2L	20034213	2L_20034213_SNP [dm3] 2L_20034213_SNP [dm6]	T	C	5.054e^-4	0.958	INTRON sNPF
X	14896855	X_14896855_DEL [dm3] X_15002822_DEL [dm6]	TT	T	5.061e^-4	0.958	INTRON eag
X	6742393	X_6742393_SNP [dm3] X_6848360_SNP [dm6]	C	A	5.067e^-4	0.958	NON_SYNONYMOUS_CODING Cht11 DOWNSTREAM CG4557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18004347	2L_18004347_SNP [dm3] 2L_18004347_SNP [dm6]	C	A	5.067e^-4	0.958	DOWNSTREAM CR44605 INTERGENIC
2R	9661825	2R_9661825_DEL [dm3] 2R_13774320_DEL [dm6]	CCTTAAAA	C	5.070e^-4	0.958	INTRON Cpr50Ca
2L	7135890	2L_7135890_SNP [dm3] 2L_7135890_SNP [dm6]	T	G	5.097e^-4	0.958	INTRON Pvf3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	9637658	X_9637658_SNP [dm3] X_9743625_SNP [dm6]	A	G	5.109e^-4	0.958	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	8008391	2R_8008391_SNP [dm3] 2R_12120886_SNP [dm6]	C	G	5.114e^-4	0.958	INTERGENIC
2L	9318333	2L_9318333_SNP [dm3] 2L_9318333_SNP [dm6]	C	G	5.114e^-4	0.958	INTERGENIC
3R	18475559	3R_18475559_SNP [dm3] 3R_22649837_SNP [dm6]	C	T	5.116e^-4	0.958	INTRON CG45058
2L	20248543	2L_20248543_SNP [dm3] 2L_20248543_SNP [dm6]	C	G	5.116e^-4	0.958	DOWNSTREAM CR40172 EXON CR40341
2R	10532218	2R_10532218_INS [dm3] 2R_14644713_INS [dm6]	T	TTTT	5.121e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10532224	2R_10532224_INS [dm3] 2R_14644719_INS [dm6]	G	GGGTTTAACA	5.121e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15104530	3L_15104530_SNP [dm3] 3L_15111430_SNP [dm6]	G	A	5.123e^-4	0.958	SYNONYMOUS_CODING CTPsyn DOWNSTREAM CG45071	TF binding site mE1_TFBS_cad
2R	15942488	2R_15942488_SNP [dm3] 2R_20054983_SNP [dm6]	A	C	5.130e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1553935	2L_1553935_SNP [dm3] 2L_1553935_SNP [dm6]	A	G	5.131e^-4	0.958	INTERGENIC
2L	9165208	2L_9165208_SNP [dm3] 2L_9165208_SNP [dm6]	T	A	5.145e^-4	0.958	NON_SYNONYMOUS_CODING CG13108 DOWNSTREAM CG9586
3L	9750430	3L_9750430_SNP [dm3] 3L_9757330_SNP [dm6]	G	A	5.148e^-4	0.958	INTRON CG42268
2R	20437877	2R_20437877_SNP [dm3] 2R_24550354_SNP [dm6]	G	A	5.148e^-4	0.958	INTRON CG4622 & 1 other
3L	10964746	3L_10964746_SNP [dm3] 3L_10971646_SNP [dm6]	G	A	5.149e^-4	0.958	INTERGENIC
2R	19322515	2R_19322515_SNP [dm3] 2R_23434992_SNP [dm6]	G	A	5.154e^-4	0.958	INTERGENIC
2L	19366546	2L_19366546_SNP [dm3] 2L_19366546_SNP [dm6]	G	A	5.161e^-4	0.958	INTERGENIC
2L	19366547	2L_19366547_INS [dm3] 2L_19366547_INS [dm6]	A	AAGCACGCTGT...	5.161e^-4	0.958	INTERGENIC
X	14295108	X_14295108_SNP [dm3] X_14401075_SNP [dm6]	T	C	5.161e^-4	0.958	INTRON dpr8
2R	9661567	2R_9661567_SNP [dm3] 2R_13774062_SNP [dm6]	T	G	5.163e^-4	0.958	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2R	9400929	2R_9400929_SNP [dm3] 2R_13513424_SNP [dm6]	A	G	5.168e^-4	0.958	UTR_3_PRIME Vmat DOWNSTREAM mip120
2R	19246742	2R_19246742_SNP [dm3] 2R_23359219_SNP [dm6]	A	G	5.173e^-4	0.958	UTR_5_PRIME CG34424 UPSTREAM CG34424 & 1 other DOWNSTREAM CG9875 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19249096	2R_19249096_SNP [dm3] 2R_23361573_SNP [dm6]	C	G	5.173e^-4	0.958	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13911367	3R_13911367_SNP [dm3] 3R_18085645_SNP [dm6]	T	A	5.177e^-4	0.958	INTERGENIC
2L	1996122	2L_1996122_SNP [dm3] 2L_1996122_SNP [dm6]	G	A	5.179e^-4	0.958	DOWNSTREAM CG33543 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19432632	2L_19432632_SNP [dm3] 2L_19432632_SNP [dm6]	T	A	5.179e^-4	0.958	UTR_5_PRIME Rab9 DOWNSTREAM CG9987	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15108777	2L_15108777_DEL [dm3] 2L_15108777_DEL [dm6]	TTT	T	5.189e^-4	0.958	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15108781	2L_15108781_SNP [dm3] 2L_15108781_SNP [dm6]	A	G	5.189e^-4	0.958	UPSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9750409	3L_9750409_SNP [dm3] 3L_9757309_SNP [dm6]	G	C	5.189e^-4	0.958	INTRON CG42268
X	5928201	X_5928201_SNP [dm3] X_6034168_SNP [dm6]	A	T	5.195e^-4	0.958	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	14371856	3L_14371856_SNP [dm3] 3L_14378756_SNP [dm6]	C	A	5.198e^-4	0.958	INTERGENIC
3L	3241585	3L_3241585_SNP [dm3] 3L_3241585_SNP [dm6]	C	A	5.216e^-4	0.958	INTERGENIC
3R	18545537	3R_18545537_SNP [dm3] 3R_22719815_SNP [dm6]	A	G	5.218e^-4	0.958	INTRON wge	TF binding site mE1_TFBS_sens
3R	18545545	3R_18545545_SNP [dm3] 3R_22719823_SNP [dm6]	T	C	5.218e^-4	0.958	INTRON wge	TF binding site mE1_TFBS_sens
3L	15931482	3L_15931482_SNP [dm3] 3L_15938382_SNP [dm6]	A	G	5.233e^-4	0.958	INTRON Pka-C3
3L	7259568	3L_7259568_SNP [dm3] 3L_7266468_SNP [dm6]	A	G	5.235e^-4	0.958	UTR_3_PRIME unc-13-4A
2L	9097412	2L_9097412_SNP [dm3] 2L_9097412_SNP [dm6]	T	A	5.241e^-4	0.958	UPSTREAM CG31609 INTERGENIC
2L	16703967	2L_16703967_SNP [dm3] 2L_16703967_SNP [dm6]	A	G	5.263e^-4	0.958	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11771743	2R_11771743_SNP [dm3] 2R_15884238_SNP [dm6]	T	G	5.264e^-4	0.958	INTRON sli
2L	5742520	2L_5742520_SNP [dm3] 2L_5742520_SNP [dm6]	T	C	5.264e^-4	0.958	INTRON CG11030
2L	18784749	2L_18784749_SNP [dm3] 2L_18784749_SNP [dm6]	C	G	5.265e^-4	0.958	INTRON ham	TF binding site BDTNP1_TFBS_dl
3L	15705539	3L_15705539_SNP [dm3] 3L_15712439_SNP [dm6]	T	G	5.266e^-4	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	15607241	3L_15607241_SNP [dm3] 3L_15614141_SNP [dm6]	G	C	5.268e^-4	0.958	INTRON comm3
2R	10532240	2R_10532240_SNP [dm3] 2R_14644735_SNP [dm6]	T	C	5.268e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10678225	3L_10678225_SNP [dm3] 3L_10685125_SNP [dm6]	C	G	5.271e^-4	0.958	NON_SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22763507	3R_22763507_SNP [dm3] 3R_26937785_SNP [dm6]	A	C	5.273e^-4	0.958	INTRON sda
2R	9661838	2R_9661838_SNP [dm3] 2R_13774333_SNP [dm6]	T	A	5.289e^-4	0.958	SPLICE_SITE_REGION Cpr50Ca INTRON Cpr50Ca
3L	17328800	3L_17328800_SNP [dm3] 3L_17335700_SNP [dm6]	A	G	5.292e^-4	0.958	DOWNSTREAM CR44564 INTERGENIC
X	6798329	X_6798329_SNP [dm3] X_6904296_SNP [dm6]	A	G	5.299e^-4	0.958	INTERGENIC
2R	10532223	2R_10532223_SNP [dm3] 2R_14644718_SNP [dm6]	A	C	5.300e^-4	0.958	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14412513	2R_14412513_SNP [dm3] 2R_18525008_SNP [dm6]	A	C	5.314e^-4	0.958	UTR_3_PRIME CG43066
2L	18008229	2L_18008229_SNP [dm3] 2L_18008229_SNP [dm6]	A	C	5.318e^-4	0.958	NON_SYNONYMOUS_CODING CG42634 UTR_5_PRIME CG42635 UPSTREAM CG42635 & 1 other DOWNSTREAM CG42659
3L	12331940	3L_12331940_DEL [dm3] 3L_12338840_DEL [dm6]	CATCC	C	5.319e^-4	0.958	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6722241	3R_6722241_SNP [dm3] 3R_10896519_SNP [dm6]	C	T	5.330e^-4	0.958	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3R	6721502	3R_6721502_SNP [dm3] 3R_10895780_SNP [dm6]	A	T	5.331e^-4	0.958	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	17919042	3R_17919042_SNP [dm3] 3R_22093320_SNP [dm6]	C	T	5.331e^-4	0.958	INTRON CG5778
3R	9104766	3R_9104766_SNP [dm3] 3R_13279044_SNP [dm6]	G	A	5.333e^-4	0.958	UPSTREAM CG8630 INTERGENIC
2L	19225371	2L_19225371_SNP [dm3] 2L_19225371_SNP [dm6]	G	A	5.338e^-4	0.958	INTERGENIC

By genomic position
Variant impact
Gene name

TotArea_Butanedione phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results