DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.937e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2121 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4888285	2L_4888285_SNP [dm3] 2L_4888285_SNP [dm6]	G	T	6.038e^-9	0.011	INTERGENIC
2L	4888154	2L_4888154_SNP [dm3] 2L_4888154_SNP [dm6]	T	C	5.689e^-8	0.053	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5416145	3R_5416145_SNP [dm3] 3R_9590423_SNP [dm6]	A	C	6.287e^-7	0.28	SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312 DOWNSTREAM P58IPK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	4888035	2L_4888035_SNP [dm3] 2L_4888035_SNP [dm6]	G	T	6.603e^-7	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4888027	2L_4888027_SNP [dm3] 2L_4888027_SNP [dm6]	A	T	7.469e^-7	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4888011	2L_4888011_SNP [dm3] 2L_4888011_SNP [dm6]	C	T	1.469e^-6	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13974639	3R_13974639_SNP [dm3] 3R_18148917_SNP [dm6]	A	G	2.081e^-6	0.471	INTERGENIC
2L	17508283	2L_17508283_SNP [dm3] 2L_17508283_SNP [dm6]	G	A	2.693e^-6	0.471	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2L	4888015	2L_4888015_SNP [dm3] 2L_4888015_SNP [dm6]	G	T	2.979e^-6	0.471	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8722155	2R_8722155_SNP [dm3] 2R_12834650_SNP [dm6]	C	T	3.180e^-6	0.471	INTERGENIC
2L	3300354	2L_3300354_SNP [dm3] 2L_3300354_SNP [dm6]	A	G	3.238e^-6	0.471	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7703743	3R_7703743_SNP [dm3] 3R_11878021_SNP [dm6]	A	G	3.343e^-6	0.471	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4888043	2L_4888043_SNP [dm3] 2L_4888043_SNP [dm6]	A	T	3.382e^-6	0.471	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8165014	2R_8165014_DEL [dm3] 2R_12277509_DEL [dm6]	CT	C	3.516e^-6	0.471	UTR_3_PRIME Cam DOWNSTREAM Cam
2R	8165706	2R_8165706_SNP [dm3] 2R_12278201_SNP [dm6]	C	T	4.461e^-6	0.484	UTR_3_PRIME Cam
2R	8177295	2R_8177295_SNP [dm3] 2R_12289790_SNP [dm6]	T	C	4.798e^-6	0.484	UPSTREAM CG42700 INTRON CG42700
2R	8170186	2R_8170186_SNP [dm3] 2R_12282681_SNP [dm6]	C	T	4.800e^-6	0.484	INTRON CG42700
3R	7703751	3R_7703751_SNP [dm3] 3R_11878029_SNP [dm6]	A	C	5.132e^-6	0.484	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8177294	2R_8177294_SNP [dm3] 2R_12289789_SNP [dm6]	T	C	5.521e^-6	0.484	UPSTREAM CG42700 INTRON CG42700
3R	22705704	3R_22705704_SNP [dm3] 3R_26879982_SNP [dm6]	G	T	5.611e^-6	0.484	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
X	16227074	X_16227074_SNP [dm3] X_16333041_SNP [dm6]	T	C	5.656e^-6	0.484	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11834977	2L_11834977_SNP [dm3] 2L_11834977_SNP [dm6]	G	T	6.030e^-6	0.484	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	6.211e^-6	0.484	INTRON Con
2R	8166123	2R_8166123_DEL [dm3] 2R_12278618_DEL [dm6]	ACTACCCAA	A	6.227e^-6	0.484	UTR_3_PRIME Cam
3R	13958095	3R_13958095_SNP [dm3] 3R_18132373_SNP [dm6]	A	G	6.548e^-6	0.484	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16278213	3L_16278213_SNP [dm3] 3L_16285113_SNP [dm6]	G	A	6.875e^-6	0.484	SYNONYMOUS_CODING CG13047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7950266	3L_7950266_SNP [dm3] 3L_7957166_SNP [dm6]	T	C	6.969e^-6	0.484	INTERGENIC
2R	10420482	2R_10420482_SNP [dm3] 2R_14532977_SNP [dm6]	T	C	7.486e^-6	0.484	INTRON ttv
2R	10420471	2R_10420471_SNP [dm3] 2R_14532966_SNP [dm6]	T	C	7.493e^-6	0.484	INTRON ttv
3L	16257666	3L_16257666_SNP [dm3] 3L_16264566_SNP [dm6]	A	T	8.371e^-6	0.512	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7686942	3R_7686942_SNP [dm3] 3R_11861220_SNP [dm6]	C	T	8.467e^-6	0.512	INTRON CG6959
2R	8166660	2R_8166660_INS [dm3] 2R_12279155_INS [dm6]	T	TGTAT	8.732e^-6	0.512	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3L	4176697	3L_4176697_SNP [dm3] 3L_4176697_SNP [dm6]	C	T	9.915e^-6	0.514	SYNONYMOUS_CODING Teh4 INTRON CG18675
3R	22021441	3R_22021441_SNP [dm3] 3R_26195719_SNP [dm6]	A	T	1.020e^-5	0.514	INTRON CR44320
X	9290902	X_9290902_SNP [dm3] X_9396869_SNP [dm6]	T	A	1.024e^-5	0.514	INTRON mgl
X	9290903	X_9290903_SNP [dm3] X_9396870_SNP [dm6]	A	G	1.024e^-5	0.514	INTRON mgl
2R	19394863	2R_19394863_SNP [dm3] 2R_23507340_SNP [dm6]	C	A	1.065e^-5	0.514	EXON CR43794
2L	11834958	2L_11834958_SNP [dm3] 2L_11834958_SNP [dm6]	T	C	1.075e^-5	0.514	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
3L	9511646	3L_9511646_SNP [dm3] 3L_9518546_SNP [dm6]	A	G	1.088e^-5	0.514	INTRON CG33700
2R	10401612	2R_10401612_SNP [dm3] 2R_14514107_SNP [dm6]	G	A	1.097e^-5	0.514	INTRON Cpr51A & 1 other
2R	8167588	2R_8167588_SNP [dm3] 2R_12280083_SNP [dm6]	C	G	1.163e^-5	0.53	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
X	3848574	X_3848574_INS [dm3] X_3954541_INS [dm6]	A	ATA	1.202e^-5	0.53	UTR_3_PRIME Vap-33A DOWNSTREAM Vap-33A
2R	19674526	2R_19674526_SNP [dm3] 2R_23787003_SNP [dm6]	G	A	1.243e^-5	0.53	INTRON CG9850
3R	27143611	3R_27143611_SNP [dm3] 3R_31317889_SNP [dm6]	G	A	1.274e^-5	0.53	INTRON CG34347
3R	19483956	3R_19483956_SNP [dm3] 3R_23658234_SNP [dm6]	G	A	1.280e^-5	0.53	INTRON CG31145
3R	18753179	3R_18753179_SNP [dm3] 3R_22927457_SNP [dm6]	A	G	1.299e^-5	0.53	INTRON klg
2R	19401265	2R_19401265_SNP [dm3] 2R_23513742_SNP [dm6]	A	C	1.405e^-5	0.552	INTERGENIC
2L	11835010	2L_11835010_SNP [dm3] 2L_11835010_SNP [dm6]	T	G	1.430e^-5	0.552	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
3R	23189005	3R_23189005_SNP [dm3] 3R_27363283_SNP [dm6]	A	G	1.481e^-5	0.552	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3L	9943010	3L_9943010_SNP [dm3] 3L_9949910_SNP [dm6]	A	T	1.486e^-5	0.552	INTRON CG34356
3L	5514491	3L_5514491_SNP [dm3] 3L_5521391_SNP [dm6]	G	T	1.540e^-5	0.552	INTRON Lkr	TF binding site mE1_TFBS_sens
3R	6202329	3R_6202329_INS [dm3] 3R_10376607_INS [dm6]	T	TT	1.556e^-5	0.552	INTRON Rfx	TF binding site BDTNP1_TFBS_twi
3L	8949981	3L_8949981_SNP [dm3] 3L_8956881_SNP [dm6]	T	C	1.559e^-5	0.552	SPLICE_SITE_DONOR mRpL12 DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19401264	2R_19401264_SNP [dm3] 2R_23513741_SNP [dm6]	A	G	1.598e^-5	0.555	INTERGENIC
2L	11835082	2L_11835082_SNP [dm3] 2L_11835082_SNP [dm6]	G	A	1.718e^-5	0.576	SPLICE_SITE_REGION Pde1c UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	19508648	2L_19508648_SNP [dm3] 2L_19508648_SNP [dm6]	A	G	1.738e^-5	0.576	UTR_5_PRIME CG10188 DOWNSTREAM CG10186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11792480	2R_11792480_SNP [dm3] 2R_15904975_SNP [dm6]	T	C	1.751e^-5	0.576	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	21719520	3R_21719520_SNP [dm3] 3R_25893798_SNP [dm6]	C	A	1.845e^-5	0.591	NON_SYNONYMOUS_CODING CG5913 DOWNSTREAM Lnk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22021363	3R_22021363_INS [dm3] 3R_26195641_INS [dm6]	A	ACT	1.864e^-5	0.591	INTRON CR44320	TF binding site mE1_TFBS_inv
2R	8164605	2R_8164605_SNP [dm3] 2R_12277100_SNP [dm6]	A	G	1.890e^-5	0.591	UTR_3_PRIME Cam DOWNSTREAM Cam
3R	10608681	3R_10608681_DEL [dm3] 3R_14782959_DEL [dm6]	TT	T	1.928e^-5	0.593	INTRON jvl
2L	911416	2L_911416_SNP [dm3] 2L_911416_SNP [dm6]	T	C	1.967e^-5	0.593	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11303819	2R_11303819_SNP [dm3] 2R_15416314_SNP [dm6]	G	T	2.024e^-5	0.593	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8171467	2R_8171467_SNP [dm3] 2R_12283962_SNP [dm6]	G	T	2.073e^-5	0.593	INTRON CG42700
3R	7689703	3R_7689703_SNP [dm3] 3R_11863981_SNP [dm6]	G	A	2.073e^-5	0.593	INTRON CG6959
2L	4238637	2L_4238637_SNP [dm3] 2L_4238637_SNP [dm6]	C	A	2.087e^-5	0.593	INTERGENIC
3R	12925512	3R_12925512_SNP [dm3] 3R_17099790_SNP [dm6]	G	A	2.243e^-5	0.628	UPSTREAM cher INTRON cher
2L	18383466	2L_18383466_SNP [dm3] 2L_18383466_SNP [dm6]	C	G	2.478e^-5	0.683	SYNONYMOUS_CODING Fas3	TF binding site mE1_TFBS_cad
2L	2704947	2L_2704947_SNP [dm3] 2L_2704947_SNP [dm6]	C	G	2.545e^-5	0.692	NON_SYNONYMOUS_CODING CG31690	TF binding site BDTNP1_TFBS_twi
3R	7703773	3R_7703773_SNP [dm3] 3R_11878051_SNP [dm6]	T	A	2.681e^-5	0.718	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	19901289	X_19901289_SNP [dm3] X_20007256_SNP [dm6]	A	G	2.746e^-5	0.719	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
3R	22705671	3R_22705671_SNP [dm3] 3R_26879949_SNP [dm6]	T	A	2.763e^-5	0.719	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
2L	4238687	2L_4238687_SNP [dm3] 2L_4238687_SNP [dm6]	G	A	2.857e^-5	0.719	INTERGENIC
3R	7685502	3R_7685502_SNP [dm3] 3R_11859780_SNP [dm6]	G	A	2.864e^-5	0.719	INTRON CG6959
2R	8167586	2R_8167586_SNP [dm3] 2R_12280081_SNP [dm6]	A	G	2.874e^-5	0.719	START_GAINED CG42700 UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3L	10734988	3L_10734988_SNP [dm3] 3L_10741888_SNP [dm6]	G	A	2.963e^-5	0.725	INTERGENIC
2L	17086442	2L_17086442_SNP [dm3] 2L_17086442_SNP [dm6]	C	T	2.976e^-5	0.725	DOWNSTREAM CR43819 INTERGENIC
3L	7950290	3L_7950290_SNP [dm3] 3L_7957190_SNP [dm6]	T	G	3.069e^-5	0.728	INTERGENIC
2R	8722219	2R_8722219_SNP [dm3] 2R_12834714_SNP [dm6]	C	A	3.123e^-5	0.728	INTERGENIC
2R	8162539	2R_8162539_SNP [dm3] 2R_12275034_SNP [dm6]	A	G	3.159e^-5	0.728	UTR_3_PRIME Cam DOWNSTREAM Cam
2L	3557045	2L_3557045_SNP [dm3] 2L_3557045_SNP [dm6]	T	A	3.240e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	21725739	3R_21725739_DEL [dm3] 3R_25900017_DEL [dm6]	TT	T	3.380e^-5	0.728	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
2R	4660364	2R_4660364_SNP [dm3] 2R_8772859_SNP [dm6]	G	C	3.392e^-5	0.728	INTERGENIC
3L	10144937	3L_10144937_INS [dm3] 3L_10151837_INS [dm6]	A	AAGTCATATTTTGCATTTTG...	3.410e^-5	0.728	UTR_5_PRIME CG8072 UPSTREAM snoRNA:MeU2-A31 INTRON dpr10
3R	26588495	3R_26588495_INS [dm3] 3R_30762773_INS [dm6]	ATTA	TCGAC	3.536e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	10417989	2R_10417989_SNP [dm3] 2R_14530484_SNP [dm6]	C	T	3.558e^-5	0.728	INTRON ttv
3R	7703628	3R_7703628_SNP [dm3] 3R_11877906_SNP [dm6]	G	C	3.602e^-5	0.728	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22495173	3R_22495173_SNP [dm3] 3R_26669451_SNP [dm6]	G	A	3.632e^-5	0.728	INTRON beat-VII
2L	11834972	2L_11834972_SNP [dm3] 2L_11834972_SNP [dm6]	T	C	3.654e^-5	0.728	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
X	20484040	X_20484040_SNP [dm3] X_20613013_SNP [dm6]	T	C	3.736e^-5	0.728	INTRON RunxA	TF binding site mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
X	9447572	X_9447572_SNP [dm3] X_9553539_SNP [dm6]	G	T	3.751e^-5	0.728	UTR_5_PRIME l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8164546	2R_8164546_SNP [dm3] 2R_12277041_SNP [dm6]	A	C	3.754e^-5	0.728	UTR_3_PRIME Cam DOWNSTREAM Cam
2R	8177181	2R_8177181_SNP [dm3] 2R_12289676_SNP [dm6]	C	T	3.773e^-5	0.728	INTRON CG42700
3R	22531136	3R_22531136_SNP [dm3] 3R_26705414_SNP [dm6]	C	A	3.776e^-5	0.728	INTRON amon
3R	25301625	3R_25301625_SNP [dm3] 3R_29475903_SNP [dm6]	T	G	3.792e^-5	0.728	INTRON Ptp99A
3R	22021297	3R_22021297_SNP [dm3] 3R_26195575_SNP [dm6]	T	G	3.878e^-5	0.728	EXON CR44320	TF binding site mE1_TFBS_inv
X	2487976	X_2487976_SNP [dm3] X_2593943_SNP [dm6]	T	A	3.922e^-5	0.728	INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10734981	3L_10734981_SNP [dm3] 3L_10741881_SNP [dm6]	T	G	3.927e^-5	0.728	INTERGENIC
X	10088958	X_10088958_SNP [dm3] X_10194925_SNP [dm6]	A	G	3.941e^-5	0.728	UTR_3_PRIME CG43902 INTRON CR44894
3L	4651939	3L_4651939_SNP [dm3] 3L_4651939_SNP [dm6]	G	C	3.981e^-5	0.728	INTRON axo
3L	9224407	3L_9224407_SNP [dm3] 3L_9231307_SNP [dm6]	C	T	4.013e^-5	0.728	INTERGENIC
X	16226965	X_16226965_DEL [dm3] X_16332932_DEL [dm6]	TC	T	4.119e^-5	0.728	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	2487968	X_2487968_SNP [dm3] X_2593935_SNP [dm6]	C	T	4.227e^-5	0.728	INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15016198	3L_15016198_SNP [dm3] 3L_15023098_SNP [dm6]	T	A	4.269e^-5	0.728	UPSTREAM CG32148 INTRON Sytbeta
2L	20438418	2L_20438418_SNP [dm3] 2L_20438418_SNP [dm6]	T	C	4.270e^-5	0.728	UPSTREAM CR43607 INTRON CG31688 EXON CR43607
2L	9685976	2L_9685976_SNP [dm3] 2L_9685976_SNP [dm6]	G	C	4.282e^-5	0.728	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22191194	3R_22191194_SNP [dm3] 3R_26365472_SNP [dm6]	C	T	4.346e^-5	0.728	INTERGENIC
2R	8171415	2R_8171415_SNP [dm3] 2R_12283910_SNP [dm6]	T	C	4.353e^-5	0.728	INTRON CG42700
2R	8163241	2R_8163241_SNP [dm3] 2R_12275736_SNP [dm6]	A	T	4.365e^-5	0.728	UTR_3_PRIME Cam
2R	8171308	2R_8171308_SNP [dm3] 2R_12283803_SNP [dm6]	C	G	4.373e^-5	0.728	INTRON CG42700
2R	8166698	2R_8166698_SNP [dm3] 2R_12279193_SNP [dm6]	T	A	4.376e^-5	0.728	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2L	18515398	2L_18515398_SNP [dm3] 2L_18515398_SNP [dm6]	A	G	4.439e^-5	0.728	INTERGENIC
3R	12607497	3R_12607497_INS [dm3] 3R_16781775_INS [dm6]	C	CTTTTAAAAATATTAATAAG...	4.467e^-5	0.728	INTERGENIC
X	21909025	X_21909025_SNP [dm3] X_22507189_SNP [dm6]	A	T	4.524e^-5	0.728	NON_SYNONYMOUS_CODING l_1_G0196
2R	8166538	2R_8166538_SNP [dm3] 2R_12279033_SNP [dm6]	T	C	4.582e^-5	0.728	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	25562840	3R_25562840_SNP [dm3] 3R_29737118_SNP [dm6]	C	A	4.585e^-5	0.728	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16282206	3L_16282206_SNP [dm3] 3L_16289106_SNP [dm6]	T	A	4.589e^-5	0.728	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10420196	2R_10420196_SNP [dm3] 2R_14532691_SNP [dm6]	T	C	4.598e^-5	0.728	INTRON ttv
2R	10378888	2R_10378888_SNP [dm3] 2R_14491383_SNP [dm6]	C	T	4.654e^-5	0.728	INTRON L
2R	8171471	2R_8171471_SNP [dm3] 2R_12283966_SNP [dm6]	T	C	4.775e^-5	0.728	INTRON CG42700
2L	11835077	2L_11835077_SNP [dm3] 2L_11835077_SNP [dm6]	G	A	4.892e^-5	0.728	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	9140259	2L_9140259_SNP [dm3] 2L_9140259_SNP [dm6]	C	T	4.967e^-5	0.728	INTRON CG32982
2R	8171836	2R_8171836_SNP [dm3] 2R_12284331_SNP [dm6]	C	T	4.981e^-5	0.728	INTRON CG42700
3R	23189029	3R_23189029_SNP [dm3] 3R_27363307_SNP [dm6]	G	T	4.984e^-5	0.728	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
2L	11835043	2L_11835043_SNP [dm3] 2L_11835043_SNP [dm6]	T	A	4.994e^-5	0.728	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	7238025	2L_7238025_SNP [dm3] 2L_7238025_SNP [dm6]	A	G	5.003e^-5	0.728	INTRON Ndae1
3R	13974653	3R_13974653_SNP [dm3] 3R_18148931_SNP [dm6]	C	G	5.012e^-5	0.728	INTERGENIC
3R	22222506	3R_22222506_SNP [dm3] 3R_26396784_SNP [dm6]	A	G	5.033e^-5	0.728	INTERGENIC
3R	13783768	3R_13783768_INS [dm3] 3R_17958046_INS [dm6]	A	AATGTACTTTAACTA...	5.040e^-5	0.728	INTRON cpo
2L	910348	2L_910348_SNP [dm3] 2L_910348_SNP [dm6]	C	A	5.046e^-5	0.728	INTERGENIC
2R	19674518	2R_19674518_SNP [dm3] 2R_23786995_SNP [dm6]	A	G	5.132e^-5	0.729	INTRON CG9850
3R	22705672	3R_22705672_SNP [dm3] 3R_26879950_SNP [dm6]	A	G	5.178e^-5	0.729	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
2L	4888152	2L_4888152_SNP [dm3] 2L_4888152_SNP [dm6]	T	C	5.200e^-5	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20860649	X_20860649_SNP [dm3] X_20989622_SNP [dm6]	T	C	5.215e^-5	0.729	INTERGENIC
3R	16485040	3R_16485040_SNP [dm3] 3R_20659318_SNP [dm6]	A	T	5.270e^-5	0.729	INTRON Nep4
3L	4175202	3L_4175202_SNP [dm3] 3L_4175202_SNP [dm6]	A	G	5.342e^-5	0.729	UTR_3_PRIME Teh4 INTRON CG18675
3R	26198235	3R_26198235_SNP [dm3] 3R_30372513_SNP [dm6]	T	G	5.443e^-5	0.729	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16523252	3R_16523252_SNP [dm3] 3R_20697530_SNP [dm6]	G	T	5.449e^-5	0.729	INTRON Oamb
2R	10419135	2R_10419135_DEL [dm3] 2R_14531630_DEL [dm6]	ACATATGTATGTA...	A	5.505e^-5	0.729	INTRON ttv
3R	7673603	3R_7673603_SNP [dm3] 3R_11847881_SNP [dm6]	C	G	5.522e^-5	0.729	INTRON CG6959	TF binding site mE1_TFBS_cad
2R	10401734	2R_10401734_SNP [dm3] 2R_14514229_SNP [dm6]	T	C	5.558e^-5	0.729	INTRON Cpr51A & 1 other
X	8795945	X_8795945_SNP [dm3] X_8901912_SNP [dm6]	T	C	5.574e^-5	0.729	SYNONYMOUS_CODING Rbm13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1384835	3L_1384835_SNP [dm3] 3L_1384835_SNP [dm6]	C	G	5.601e^-5	0.729	NON_SYNONYMOUS_CODING ru INTRON Ptp61F
2L	10930566	2L_10930566_SNP [dm3] 2L_10930566_SNP [dm6]	G	T	5.625e^-5	0.729	INTRON dpr2
3R	16523248	3R_16523248_SNP [dm3] 3R_20697526_SNP [dm6]	A	C	5.648e^-5	0.729	INTRON Oamb
3R	10785452	3R_10785452_SNP [dm3] 3R_14959730_SNP [dm6]	T	A	5.825e^-5	0.729	INTERGENIC
3L	16283379	3L_16283379_SNP [dm3] 3L_16290279_SNP [dm6]	A	G	5.892e^-5	0.729	SYNONYMOUS_CODING CG13045
2L	1233831	2L_1233831_SNP [dm3] 2L_1233831_SNP [dm6]	C	A	5.897e^-5	0.729	INTERGENIC
3R	9758957	3R_9758957_SNP [dm3] 3R_13933235_SNP [dm6]	G	T	5.950e^-5	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	23781663	3R_23781663_SNP [dm3] 3R_27955941_SNP [dm6]	T	C	5.953e^-5	0.729	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21807559	3R_21807559_SNP [dm3] 3R_25981837_SNP [dm6]	C	A	5.975e^-5	0.729	UTR_3_PRIME CG42261
3R	22758009	3R_22758009_SNP [dm3] 3R_26932287_SNP [dm6]	C	T	5.980e^-5	0.729	INTRON sda
3R	7703761	3R_7703761_SNP [dm3] 3R_11878039_SNP [dm6]	C	A	6.043e^-5	0.729	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26588453	3R_26588453_SNP [dm3] 3R_30762731_SNP [dm6]	C	T	6.044e^-5	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	18334283	X_18334283_SNP [dm3] X_18440250_SNP [dm6]	C	T	6.089e^-5	0.729	SYNONYMOUS_CODING CG32548 DOWNSTREAM CG32551 & 1 other
3R	7703685	3R_7703685_SNP [dm3] 3R_11877963_SNP [dm6]	T	C	6.160e^-5	0.729	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	914796	2L_914796_SNP [dm3] 2L_914796_SNP [dm6]	G	A	6.181e^-5	0.729	SPLICE_SITE_REGION GluRIIC INTRON GluRIIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26588459	3R_26588459_SNP [dm3] 3R_30762737_SNP [dm6]	A	G	6.205e^-5	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	26588463	3R_26588463_SNP [dm3] 3R_30762741_SNP [dm6]	T	A	6.205e^-5	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	14779867	2L_14779867_SNP [dm3] 2L_14779867_SNP [dm6]	T	A	6.246e^-5	0.729	INTERGENIC
2R	10416302	2R_10416302_INS [dm3] 2R_14528797_INS [dm6]	TCCAG	ATACTGGA	6.269e^-5	0.729	INTRON ttv
2L	19506764	2L_19506764_SNP [dm3] 2L_19506764_SNP [dm6]	C	A	6.301e^-5	0.729	INTRON CG10188	transposable element FlyBase
3L	8201579	3L_8201579_SNP [dm3] 3L_8208479_SNP [dm6]	C	T	6.396e^-5	0.735	INTERGENIC
3L	7165828	3L_7165828_SNP [dm3] 3L_7172728_SNP [dm6]	G	A	6.431e^-5	0.735	INTRON Dscam2
2R	10420166	2R_10420166_SNP [dm3] 2R_14532661_SNP [dm6]	C	G	6.515e^-5	0.737	INTRON ttv
3R	18042732	3R_18042732_SNP [dm3] 3R_22217010_SNP [dm6]	G	A	6.528e^-5	0.737	UTR_3_PRIME Gld2 INTRON SKIP
3L	16271748	3L_16271748_SNP [dm3] 3L_16278648_SNP [dm6]	G	T	6.632e^-5	0.745	UTR_3_PRIME CG13050 DOWNSTREAM CG13065
2L	19418157	2L_19418157_SNP [dm3] 2L_19418157_SNP [dm6]	G	T	6.683e^-5	0.746	UTR_3_PRIME Lectin-galC1 UPSTREAM lectin-37Da & 1 other INTRON Pax
2R	8166550	2R_8166550_SNP [dm3] 2R_12279045_SNP [dm6]	G	A	6.827e^-5	0.747	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	13807360	3R_13807360_SNP [dm3] 3R_17981638_SNP [dm6]	A	C	6.904e^-5	0.747	INTRON cpo
2L	19506853	2L_19506853_SNP [dm3] 2L_19506853_SNP [dm6]	C	T	6.905e^-5	0.747	INTRON CG10188	transposable element FlyBase
3R	14686643	3R_14686643_SNP [dm3] 3R_18860921_SNP [dm6]	T	C	6.925e^-5	0.747	INTERGENIC
3R	14744056	3R_14744056_SNP [dm3] 3R_18918334_SNP [dm6]	A	G	6.974e^-5	0.747	UTR_5_PRIME Xrp1 INTRON Xrp1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26588452	3R_26588452_SNP [dm3] 3R_30762730_SNP [dm6]	A	T	6.974e^-5	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	3470830	2L_3470830_SNP [dm3] 2L_3470830_SNP [dm6]	G	T	6.977e^-5	0.747	SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site mE1_TFBS_cad
2R	10416556	2R_10416556_SNP [dm3] 2R_14529051_SNP [dm6]	C	G	7.013e^-5	0.747	INTRON ttv
3L	1242957	3L_1242957_SNP [dm3] 3L_1242957_SNP [dm6]	T	A	7.080e^-5	0.75	NON_SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_sens
2R	8167416	2R_8167416_SNP [dm3] 2R_12279911_SNP [dm6]	G	C	7.176e^-5	0.755	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3R	18641125	3R_18641125_SNP [dm3] 3R_22815403_SNP [dm6]	A	T	7.210e^-5	0.755	NON_SYNONYMOUS_CODING CG13840	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3486285	2L_3486285_SNP [dm3] 2L_3486285_SNP [dm6]	G	A	7.246e^-5	0.755	INTRON CG15414
3R	14686590	3R_14686590_SNP [dm3] 3R_18860868_SNP [dm6]	A	G	7.287e^-5	0.755	INTERGENIC
3R	6204215	3R_6204215_SNP [dm3] 3R_10378493_SNP [dm6]	T	A	7.397e^-5	0.762	UPSTREAM Rfx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13947847	3R_13947847_SNP [dm3] 3R_18122125_SNP [dm6]	G	A	7.438e^-5	0.762	UTR_5_PRIME sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2159371	3L_2159371_SNP [dm3] 3L_2159371_SNP [dm6]	T	C	7.500e^-5	0.764	INTRON CG15822	TF binding site mE1_TFBS_inv
X	8140522	X_8140522_SNP [dm3] X_8246489_SNP [dm6]	T	A	7.667e^-5	0.765	INTRON Trxr-1	TF binding site mE1_TFBS_chinmo
2R	15433939	2R_15433939_SNP [dm3] 2R_19546434_SNP [dm6]	A	G	7.674e^-5	0.765	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	17086481	2L_17086481_SNP [dm3] 2L_17086481_SNP [dm6]	T	A	7.791e^-5	0.765	DOWNSTREAM CR43819 INTERGENIC
2L	11822946	2L_11822946_SNP [dm3] 2L_11822946_SNP [dm6]	G	C	7.796e^-5	0.765	INTRON Pde1c
3L	9943027	3L_9943027_SNP [dm3] 3L_9949927_SNP [dm6]	C	T	7.831e^-5	0.765	INTRON CG34356
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	7.851e^-5	0.765	INTRON rk
3R	22705711	3R_22705711_INS [dm3] 3R_26879989_INS [dm6]	T	TGAGCAGTAGT...	7.855e^-5	0.765	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	18641121	3R_18641121_SNP [dm3] 3R_22815399_SNP [dm6]	A	G	8.016e^-5	0.765	SYNONYMOUS_CODING CG13840	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8170850	2R_8170850_SNP [dm3] 2R_12283345_SNP [dm6]	T	C	8.064e^-5	0.765	INTRON CG42700
2L	17015499	2L_17015499_SNP [dm3] 2L_17015499_SNP [dm6]	G	A	8.099e^-5	0.765	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2R	10401731	2R_10401731_SNP [dm3] 2R_14514226_SNP [dm6]	G	A	8.105e^-5	0.765	INTRON Cpr51A & 1 other
2R	4083177	2R_4083177_SNP [dm3] 2R_8195672_SNP [dm6]	C	T	8.111e^-5	0.765	INTRON LRP1
3L	9945854	3L_9945854_SNP [dm3] 3L_9952754_SNP [dm6]	G	C	8.124e^-5	0.765	SYNONYMOUS_CODING CG34356
3R	19155959	3R_19155959_SNP [dm3] 3R_23330237_SNP [dm6]	A	G	8.151e^-5	0.765	INTRON pnt
2R	8170198	2R_8170198_SNP [dm3] 2R_12282693_SNP [dm6]	T	C	8.179e^-5	0.765	INTRON CG42700
2L	10569573	2L_10569573_SNP [dm3] 2L_10569573_SNP [dm6]	C	T	8.193e^-5	0.765	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7690676	3R_7690676_SNP [dm3] 3R_11864954_SNP [dm6]	A	G	8.214e^-5	0.765	INTRON CG6959
3L	16283382	3L_16283382_SNP [dm3] 3L_16290282_SNP [dm6]	G	A	8.273e^-5	0.765	SYNONYMOUS_CODING CG13045
2L	4753841	2L_4753841_SNP [dm3] 2L_4753841_SNP [dm6]	A	G	8.380e^-5	0.765	INTRON CG15630
X	14613598	X_14613598_SNP [dm3] X_14719565_SNP [dm6]	G	A	8.438e^-5	0.765	UPSTREAM hog INTRON NetB	transposable element FlyBase
3L	2159381	3L_2159381_SNP [dm3] 3L_2159381_SNP [dm6]	T	G	8.494e^-5	0.765	INTRON CG15822	TF binding site mE1_TFBS_inv
2R	10401736	2R_10401736_SNP [dm3] 2R_14514231_SNP [dm6]	C	T	8.555e^-5	0.765	INTRON Cpr51A & 1 other
3R	19147730	3R_19147730_SNP [dm3] 3R_23322008_SNP [dm6]	G	A	8.573e^-5	0.765	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10401738	2R_10401738_SNP [dm3] 2R_14514233_SNP [dm6]	C	T	8.575e^-5	0.765	INTRON Cpr51A & 1 other
2L	19524719	2L_19524719_SNP [dm3] 2L_19524719_SNP [dm6]	T	C	8.588e^-5	0.765	SYNONYMOUS_CODING CG10132 DOWNSTREAM CG10166	TF binding site mE1_TFBS_cad
2R	15728153	2R_15728153_SNP [dm3] 2R_19840648_SNP [dm6]	A	G	8.594e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	19524725	2L_19524725_SNP [dm3] 2L_19524725_SNP [dm6]	A	G	8.611e^-5	0.765	SYNONYMOUS_CODING CG10132 DOWNSTREAM CG10166	TF binding site mE1_TFBS_cad
2R	8167127	2R_8167127_SNP [dm3] 2R_12279622_SNP [dm6]	C	A	8.729e^-5	0.772	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	10422275	2R_10422275_SNP [dm3] 2R_14534770_SNP [dm6]	C	G	8.812e^-5	0.774	INTRON ttv
X	16225467	X_16225467_SNP [dm3] X_16331434_SNP [dm6]	T	C	8.978e^-5	0.774	UTR_3_PRIME CG9921 UPSTREAM CG9919	TF binding site BDTNP1_TFBS_Med
X	3847156	X_3847156_SNP [dm3] X_3953123_SNP [dm6]	A	G	9.055e^-5	0.774	UTR_3_PRIME Vap-33A
3L	7950270	3L_7950270_SNP [dm3] 3L_7957170_SNP [dm6]	T	A	9.103e^-5	0.774	INTERGENIC
2R	957868	2R_957868_SNP [dm3] 2R_5070363_SNP [dm6]	G	C	9.131e^-5	0.774	UPSTREAM TpnC41C INTERGENIC
3L	7837701	3L_7837701_SNP [dm3] 3L_7844601_SNP [dm6]	G	C	9.176e^-5	0.774	INTRON Pdp1	regulatory region REDfly_CRMs
2L	19506075	2L_19506075_SNP [dm3] 2L_19506075_SNP [dm6]	G	C	9.249e^-5	0.774	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15166870	3R_15166870_SNP [dm3] 3R_19341148_SNP [dm6]	T	C	9.296e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8548711	3L_8548711_SNP [dm3] 3L_8555611_SNP [dm6]	G	A	9.306e^-5	0.774	INTRON rhea
3R	7690442	3R_7690442_SNP [dm3] 3R_11864720_SNP [dm6]	T	A	9.421e^-5	0.774	INTRON CG6959
2R	15780283	2R_15780283_SNP [dm3] 2R_19892778_SNP [dm6]	T	A	9.486e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	4753835	2L_4753835_SNP [dm3] 2L_4753835_SNP [dm6]	A	G	9.539e^-5	0.774	INTRON CG15630
2R	10384693	2R_10384693_SNP [dm3] 2R_14497188_SNP [dm6]	T	C	9.550e^-5	0.774	UTR_3_PRIME L DOWNSTREAM Cpsf160
2R	12547135	2R_12547135_SNP [dm3] 2R_16659630_SNP [dm6]	C	T	9.609e^-5	0.774	UPSTREAM Picot INTRON Picot
X	22369815	X_22369815_SNP [dm3] X_22967979_SNP [dm6]	C	A	9.638e^-5	0.774	INTERGENIC
2L	3470270	2L_3470270_SNP [dm3] 2L_3470270_SNP [dm6]	C	T	9.676e^-5	0.774	SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19390322	2R_19390322_SNP [dm3] 2R_23502799_SNP [dm6]	T	G	9.700e^-5	0.774	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2R	10380536	2R_10380536_SNP [dm3] 2R_14493031_SNP [dm6]	T	C	9.716e^-5	0.774	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19484417	2L_19484417_SNP [dm3] 2L_19484417_SNP [dm6]	G	C	9.741e^-5	0.774	SYNONYMOUS_CODING CG10195 UPSTREAM CG13084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11423954	2R_11423954_SNP [dm3] 2R_15536449_SNP [dm6]	A	G	9.742e^-5	0.774	INTRON CG30471
3R	22950266	3R_22950266_SNP [dm3] 3R_27124544_SNP [dm6]	C	T	9.756e^-5	0.774	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad
2L	12842896	2L_12842896_SNP [dm3] 2L_12842896_SNP [dm6]	G	A	9.790e^-5	0.774	INTERGENIC
3L	10759469	3L_10759469_SNP [dm3] 3L_10766369_SNP [dm6]	T	G	9.791e^-5	0.774	INTERGENIC
3R	7690432	3R_7690432_SNP [dm3] 3R_11864710_SNP [dm6]	A	G	9.879e^-5	0.774	INTRON CG6959
3R	19155964	3R_19155964_SNP [dm3] 3R_23330242_SNP [dm6]	C	A	9.880e^-5	0.774	INTRON pnt
3R	21236935	3R_21236935_SNP [dm3] 3R_25411213_SNP [dm6]	T	A	9.882e^-5	0.774	INTRON Fur1
3R	18641117	3R_18641117_SNP [dm3] 3R_22815395_SNP [dm6]	T	C	9.924e^-5	0.774	NON_SYNONYMOUS_CODING CG13840	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12607473	3R_12607473_SNP [dm3] 3R_16781751_SNP [dm6]	G	A	9.945e^-5	0.774	INTERGENIC
3R	8262805	3R_8262805_SNP [dm3] 3R_12437083_SNP [dm6]	T	A	9.976e^-5	0.774	DOWNSTREAM CG17207 INTRON Desat2
3L	3770606	3L_3770606_SNP [dm3] 3L_3770606_SNP [dm6]	C	G	1.012e^-4	0.774	INTRON CG32264
3L	9943000	3L_9943000_SNP [dm3] 3L_9949900_SNP [dm6]	A	G	1.013e^-4	0.774	INTRON CG34356
3R	6307611	3R_6307611_SNP [dm3] 3R_10481889_SNP [dm6]	C	A	1.020e^-4	0.774	INTERGENIC
2R	2674198	2R_2674198_SNP [dm3] 2R_6786693_SNP [dm6]	A	C	1.025e^-4	0.774	INTRON Epac
2R	10380473	2R_10380473_SNP [dm3] 2R_14492968_SNP [dm6]	G	T	1.027e^-4	0.774	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25743489	3R_25743489_SNP [dm3] 3R_29917767_SNP [dm6]	C	T	1.027e^-4	0.774	INTRON trp
X	12333063	X_12333063_SNP [dm3] X_12439030_SNP [dm6]	A	G	1.028e^-4	0.774	INTRON Pkcdelta
2R	2851055	2R_2851055_SNP [dm3] 2R_6963550_SNP [dm6]	G	A	1.035e^-4	0.774	INTRON mim & 1 other
3R	12902811	3R_12902811_SNP [dm3] 3R_17077089_SNP [dm6]	T	A	1.062e^-4	0.774	INTRON Keap1
2L	19514621	2L_19514621_SNP [dm3] 2L_19514621_SNP [dm6]	A	T	1.069e^-4	0.774	UTR_3_PRIME CG10186 INTRON CG10186
3L	4947774	3L_4947774_SNP [dm3] 3L_4947774_SNP [dm6]	T	G	1.072e^-4	0.774	INTRON Con
3R	13965133	3R_13965133_SNP [dm3] 3R_18139411_SNP [dm6]	C	T	1.073e^-4	0.774	INTERGENIC
3L	16281241	3L_16281241_SNP [dm3] 3L_16288141_SNP [dm6]	G	A	1.074e^-4	0.774	SYNONYMOUS_CODING CG13046
3L	12288991	3L_12288991_SNP [dm3] 3L_12295891_SNP [dm6]	G	C	1.080e^-4	0.774	START_GAINED CG4328 UTR_5_PRIME CG4328
2L	19505538	2L_19505538_SNP [dm3] 2L_19505538_SNP [dm6]	G	A	1.083e^-4	0.774	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10057660	3R_10057660_SNP [dm3] 3R_14231938_SNP [dm6]	C	T	1.085e^-4	0.774	INTERGENIC
X	16226699	X_16226699_SNP [dm3] X_16332666_SNP [dm6]	T	C	1.104e^-4	0.774	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	22366604	X_22366604_SNP [dm3] X_22964768_SNP [dm6]	C	T	1.108e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13731846	3R_13731846_SNP [dm3] 3R_17906124_SNP [dm6]	G	T	1.110e^-4	0.774	SYNONYMOUS_CODING Rim UPSTREAM CG12347
3L	7016617	3L_7016617_SNP [dm3] 3L_7023517_SNP [dm6]	G	C	1.120e^-4	0.774	INTRON Mp
3L	5514742	3L_5514742_SNP [dm3] 3L_5521642_SNP [dm6]	G	A	1.121e^-4	0.774	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5514745	3L_5514745_SNP [dm3] 3L_5521645_SNP [dm6]	C	G	1.121e^-4	0.774	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5514749	3L_5514749_SNP [dm3] 3L_5521649_SNP [dm6]	G	T	1.121e^-4	0.774	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10429791	2R_10429791_SNP [dm3] 2R_14542286_SNP [dm6]	T	C	1.122e^-4	0.774	INTRON ttv
2R	10429819	2R_10429819_SNP [dm3] 2R_14542314_SNP [dm6]	A	G	1.122e^-4	0.774	INTRON ttv
3L	13215662	3L_13215662_SNP [dm3] 3L_13222562_SNP [dm6]	T	A	1.123e^-4	0.774	INTERGENIC
3L	17119696	3L_17119696_SNP [dm3] 3L_17126596_SNP [dm6]	G	A	1.127e^-4	0.774	INTRON Rbp6
3R	7690211	3R_7690211_SNP [dm3] 3R_11864489_SNP [dm6]	G	A	1.131e^-4	0.774	INTRON CG6959
3L	10734926	3L_10734926_SNP [dm3] 3L_10741826_SNP [dm6]	A	T	1.132e^-4	0.774	INTERGENIC
2L	1062860	2L_1062860_SNP [dm3] 2L_1062860_SNP [dm6]	C	T	1.132e^-4	0.774	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19660695	3R_19660695_SNP [dm3] 3R_23834973_SNP [dm6]	T	A	1.135e^-4	0.774	INTRON CG34355
3R	26095800	3R_26095800_SNP [dm3] 3R_30270078_SNP [dm6]	C	T	1.143e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17101851	2L_17101851_SNP [dm3] 2L_17101851_SNP [dm6]	T	C	1.145e^-4	0.774	INTERGENIC
2L	19724017	2L_19724017_SNP [dm3] 2L_19724017_SNP [dm6]	A	T	1.145e^-4	0.774	INTRON Lar
3L	5514761	3L_5514761_SNP [dm3] 3L_5521661_SNP [dm6]	T	C	1.154e^-4	0.774	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19546539	2R_19546539_SNP [dm3] 2R_23659016_SNP [dm6]	C	T	1.154e^-4	0.774	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9290885	X_9290885_SNP [dm3] X_9396852_SNP [dm6]	C	A	1.154e^-4	0.774	INTRON mgl
3R	23188905	3R_23188905_SNP [dm3] 3R_27363183_SNP [dm6]	A	C	1.161e^-4	0.774	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
X	12447973	X_12447973_SNP [dm3] X_12553940_SNP [dm6]	T	A	1.164e^-4	0.774	INTRON CG43921 & 1 other
X	16225518	X_16225518_SNP [dm3] X_16331485_SNP [dm6]	A	C	1.167e^-4	0.774	UTR_3_PRIME CG9921 UPSTREAM CG9919	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	18333808	X_18333808_INS [dm3] X_18439775_INS [dm6]	G	GATGTGGAAAGGATCTTAAG...	1.169e^-4	0.774	DOWNSTREAM CG32551 INTRON CG32548 & 1 other
2L	733504	2L_733504_SNP [dm3] 2L_733504_SNP [dm6]	C	T	1.176e^-4	0.774	INTERGENIC
2L	1953783	2L_1953783_SNP [dm3] 2L_1953783_SNP [dm6]	C	A	1.182e^-4	0.774	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3469745	2L_3469745_SNP [dm3] 2L_3469745_SNP [dm6]	C	A	1.190e^-4	0.774	SYNONYMOUS_CODING CG3238 UPSTREAM CG31776	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27236007	3R_27236007_SNP [dm3] 3R_31410285_SNP [dm6]	C	G	1.191e^-4	0.774	INTRON Gprk2
3R	21236936	3R_21236936_SNP [dm3] 3R_25411214_SNP [dm6]	A	G	1.197e^-4	0.774	INTRON Fur1
2R	10425418	2R_10425418_SNP [dm3] 2R_14537913_SNP [dm6]	T	C	1.202e^-4	0.774	INTRON ttv
2L	19506908	2L_19506908_DEL [dm3] 2L_19506908_DEL [dm6]	GCTCACTAGG	G	1.204e^-4	0.774	INTRON CG10188	transposable element FlyBase
3R	7690061	3R_7690061_SNP [dm3] 3R_11864339_SNP [dm6]	G	A	1.219e^-4	0.774	INTRON CG6959
3R	23157827	3R_23157827_SNP [dm3] 3R_27332105_SNP [dm6]	A	G	1.229e^-4	0.774	INTERGENIC
2L	19538984	2L_19538984_SNP [dm3] 2L_19538984_SNP [dm6]	T	C	1.244e^-4	0.774	SYNONYMOUS_CODING CG13082 DOWNSTREAM CR45455	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9291317	X_9291317_INS [dm3] X_9397284_INS [dm6]	A	ATTTGCAA	1.244e^-4	0.774	INTRON mgl
2L	17107530	2L_17107530_SNP [dm3] 2L_17107530_SNP [dm6]	G	A	1.245e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9427304	2L_9427304_SNP [dm3] 2L_9427304_SNP [dm6]	A	G	1.256e^-4	0.774	UPSTREAM CG42847 DOWNSTREAM Mco1 INTRON Fbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5514765	3L_5514765_SNP [dm3] 3L_5521665_SNP [dm6]	G	T	1.261e^-4	0.774	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1233859	2L_1233859_SNP [dm3] 2L_1233859_SNP [dm6]	G	T	1.264e^-4	0.774	INTERGENIC
2R	18235202	2R_18235202_SNP [dm3] 2R_22347697_SNP [dm6]	G	A	1.269e^-4	0.774	UPSTREAM CG11298 INTRON Liprin-gamma
2L	9605311	2L_9605311_SNP [dm3] 2L_9605311_SNP [dm6]	T	C	1.274e^-4	0.774	INTERGENIC	regulatory region REDfly_CRMs
3R	6307562	3R_6307562_SNP [dm3] 3R_10481840_SNP [dm6]	C	T	1.276e^-4	0.774	INTERGENIC
X	4755304	X_4755304_SNP [dm3] X_4861271_SNP [dm6]	G	A	1.277e^-4	0.774	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24709732	3R_24709732_SNP [dm3] 3R_28884010_SNP [dm6]	G	T	1.280e^-4	0.774	SYNONYMOUS_CODING CG14526 INTRON CG33203
3R	13094614	3R_13094614_SNP [dm3] 3R_17268892_SNP [dm6]	G	A	1.288e^-4	0.774	INTERGENIC
3R	21520144	3R_21520144_SNP [dm3] 3R_25694422_SNP [dm6]	C	G	1.305e^-4	0.774	INTERGENIC
2R	8166473	2R_8166473_SNP [dm3] 2R_12278968_SNP [dm6]	T	A	1.314e^-4	0.774	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	16882757	3R_16882757_SNP [dm3] 3R_21057035_SNP [dm6]	A	C	1.315e^-4	0.774	INTRON Mvl
3R	21520093	3R_21520093_SNP [dm3] 3R_25694371_SNP [dm6]	T	C	1.325e^-4	0.774	INTERGENIC
2L	18533997	2L_18533997_SNP [dm3] 2L_18533997_SNP [dm6]	A	G	1.326e^-4	0.774	NON_SYNONYMOUS_CODING Pde11 UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8163745	2R_8163745_SNP [dm3] 2R_12276240_SNP [dm6]	G	A	1.331e^-4	0.774	UTR_3_PRIME Cam
2R	10429583	2R_10429583_SNP [dm3] 2R_14542078_SNP [dm6]	G	A	1.334e^-4	0.774	INTRON ttv
2R	10429826	2R_10429826_SNP [dm3] 2R_14542321_SNP [dm6]	T	A	1.345e^-4	0.774	INTRON ttv
3L	4982809	3L_4982809_SNP [dm3] 3L_4982809_SNP [dm6]	G	A	1.345e^-4	0.774	INTRON Con
2R	8163711	2R_8163711_INS [dm3] 2R_12276206_INS [dm6]	C	CC	1.348e^-4	0.774	UTR_3_PRIME Cam
3L	10274649	3L_10274649_SNP [dm3] 3L_10281549_SNP [dm6]	G	C	1.350e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14666869	3L_14666869_SNP [dm3] 3L_14673769_SNP [dm6]	T	A	1.355e^-4	0.774	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25190396	3R_25190396_SNP [dm3] 3R_29364674_SNP [dm6]	A	G	1.357e^-4	0.774	INTERGENIC
3R	19155962	3R_19155962_SNP [dm3] 3R_23330240_SNP [dm6]	G	A	1.359e^-4	0.774	INTRON pnt
3L	2217944	3L_2217944_SNP [dm3] 3L_2217944_SNP [dm6]	A	G	1.364e^-4	0.774	INTERGENIC
2L	17105629	2L_17105629_SNP [dm3] 2L_17105629_SNP [dm6]	A	C	1.367e^-4	0.774	EXON CR45448
2L	9546121	2L_9546121_SNP [dm3] 2L_9546121_SNP [dm6]	G	A	1.370e^-4	0.774	SYNONYMOUS_CODING CG13114	TF binding site mE1_TFBS_chinmo
3R	22249503	3R_22249503_INS [dm3] 3R_26423781_INS [dm6]	A	ATAAATATCTCTTCCAA...	1.370e^-4	0.774	DOWNSTREAM CG6503 INTERGENIC
3L	14321646	3L_14321646_SNP [dm3] 3L_14328546_SNP [dm6]	G	T	1.370e^-4	0.774	UPSTREAM CG13482 INTRON fz
2R	10419149	2R_10419149_SNP [dm3] 2R_14531644_SNP [dm6]	A	G	1.371e^-4	0.774	INTRON ttv
2R	10401758	2R_10401758_SNP [dm3] 2R_14514253_SNP [dm6]	C	T	1.372e^-4	0.774	INTRON Cpr51A & 1 other
2R	17596631	2R_17596631_SNP [dm3] 2R_21709126_SNP [dm6]	T	C	1.375e^-4	0.774	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	1.381e^-4	0.774	INTRON fru	TF binding site BDTNP1_TFBS_da
2L	4578079	2L_4578079_SNP [dm3] 2L_4578079_SNP [dm6]	A	T	1.382e^-4	0.774	NON_SYNONYMOUS_CODING HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8721087	2R_8721087_SNP [dm3] 2R_12833582_SNP [dm6]	A	G	1.396e^-4	0.774	INTERGENIC
3L	9815253	3L_9815253_DEL [dm3] 3L_9822153_DEL [dm6]	GTTGTTGATAAA...	G	1.398e^-4	0.774	INTRON CG43897
2L	9464741	2L_9464741_SNP [dm3] 2L_9464741_SNP [dm6]	T	C	1.401e^-4	0.774	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8166343	2R_8166343_DEL [dm3] 2R_12278838_DEL [dm6]	TACAG	T	1.401e^-4	0.774	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
X	11952148	X_11952148_SNP [dm3] X_12058115_SNP [dm6]	C	T	1.414e^-4	0.774	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo
2L	5809045	2L_5809045_SNP [dm3] 2L_5809045_SNP [dm6]	T	G	1.415e^-4	0.774	UTR_3_PRIME CG11034 UPSTREAM CR44575 DOWNSTREAM CG11034
3R	6307620	3R_6307620_SNP [dm3] 3R_10481898_SNP [dm6]	G	T	1.417e^-4	0.774	INTERGENIC
X	10428340	X_10428340_SNP [dm3] X_10534307_SNP [dm6]	T	C	1.420e^-4	0.774	INTRON spri
X	10088575	X_10088575_SNP [dm3] X_10194542_SNP [dm6]	C	G	1.420e^-4	0.774	UTR_3_PRIME CG43902 INTRON CR44894
X	9291311	X_9291311_INS [dm3] X_9397278_INS [dm6]	T	TCG	1.427e^-4	0.774	INTRON mgl
3R	13927300	3R_13927300_SNP [dm3] 3R_18101578_SNP [dm6]	C	G	1.431e^-4	0.774	INTRON sr
3L	18298592	3L_18298592_DEL [dm3] 3L_18305492_DEL [dm6]	TCCCGGATAGTT...	T	1.444e^-4	0.774	INTERGENIC
3R	22021745	3R_22021745_SNP [dm3] 3R_26196023_SNP [dm6]	A	T	1.448e^-4	0.774	INTRON CR44320
3L	21072345	3L_21072345_SNP [dm3] 3L_21079245_SNP [dm6]	C	T	1.449e^-4	0.774	SYNONYMOUS_CODING ko	TF binding site mE1_TFBS_cad
X	6262550	X_6262550_SNP [dm3] X_6368517_SNP [dm6]	A	C	1.452e^-4	0.774	INTRON Marf	TF binding site mE1_TFBS_sens
3R	12607231	3R_12607231_DEL [dm3] 3R_16781509_DEL [dm6]	GTT	G	1.453e^-4	0.774	INTERGENIC
3L	8522729	3L_8522729_SNP [dm3] 3L_8529629_SNP [dm6]	T	C	1.458e^-4	0.774	INTRON foi
2R	10429613	2R_10429613_SNP [dm3] 2R_14542108_SNP [dm6]	G	A	1.463e^-4	0.774	INTRON ttv
3R	20115879	3R_20115879_SNP [dm3] 3R_24290157_SNP [dm6]	A	C	1.464e^-4	0.774	UPSTREAM CG6364 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17094699	2L_17094699_DEL [dm3] 2L_17094699_DEL [dm6]	AA	T	1.478e^-4	0.774	INTERGENIC
X	14650815	X_14650815_SNP [dm3] X_14756782_SNP [dm6]	G	T	1.479e^-4	0.774	DOWNSTREAM CG15890 INTERGENIC
2R	5444498	2R_5444498_SNP [dm3] 2R_9556993_SNP [dm6]	C	G	1.485e^-4	0.774	INTERGENIC
X	9291313	X_9291313_SNP [dm3] X_9397280_SNP [dm6]	A	C	1.489e^-4	0.774	INTRON mgl
3R	13094349	3R_13094349_SNP [dm3] 3R_17268627_SNP [dm6]	A	T	1.494e^-4	0.774	INTERGENIC
3L	8536787	3L_8536787_SNP [dm3] 3L_8543687_SNP [dm6]	T	G	1.495e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7080187	3R_7080187_SNP [dm3] 3R_11254465_SNP [dm6]	T	C	1.495e^-4	0.774	INTRON CR43283 EXON CR43283	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7684312	3R_7684312_SNP [dm3] 3R_11858590_SNP [dm6]	G	A	1.497e^-4	0.774	INTRON CG6959
2R	19392441	2R_19392441_SNP [dm3] 2R_23504918_SNP [dm6]	A	G	1.499e^-4	0.774	INTERGENIC
2R	8775715	2R_8775715_SNP [dm3] 2R_12888210_SNP [dm6]	G	C	1.504e^-4	0.774	INTRON vg
2R	15409471	2R_15409471_SNP [dm3] 2R_19521966_SNP [dm6]	T	C	1.505e^-4	0.774	UTR_3_PRIME sm
2R	8166327	2R_8166327_SNP [dm3] 2R_12278822_SNP [dm6]	T	C	1.505e^-4	0.774	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	10380488	2R_10380488_SNP [dm3] 2R_14492983_SNP [dm6]	G	A	1.508e^-4	0.774	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10380818	2R_10380818_SNP [dm3] 2R_14493313_SNP [dm6]	A	T	1.508e^-4	0.774	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10144904	3L_10144904_SNP [dm3] 3L_10151804_SNP [dm6]	T	A	1.513e^-4	0.774	UPSTREAM CG8072 & 1 other INTRON dpr10
3L	5514705	3L_5514705_SNP [dm3] 3L_5521605_SNP [dm6]	C	G	1.515e^-4	0.774	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13241984	3R_13241984_SNP [dm3] 3R_17416262_SNP [dm6]	G	A	1.518e^-4	0.774	NON_SYNONYMOUS_CODING CG5866	TF binding site mE1_TFBS_cad
2R	15391978	2R_15391978_SNP [dm3] 2R_19504473_SNP [dm6]	T	C	1.521e^-4	0.774	UTR_3_PRIME CG11007 UPSTREAM CR44472 DOWNSTREAM CG11007
3R	4054988	3R_4054988_SNP [dm3] 3R_8229266_SNP [dm6]	C	T	1.527e^-4	0.774	EXON CR45551 & 1 other	TF binding site mE1_TFBS_sbb
3L	8950352	3L_8950352_SNP [dm3] 3L_8957252_SNP [dm6]	G	A	1.533e^-4	0.774	SYNONYMOUS_CODING mRpL12 DOWNSTREAM GNBP3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1088524	2L_1088524_SNP [dm3] 2L_1088524_SNP [dm6]	C	G	1.534e^-4	0.774	INTRON CG4629
2R	15791587	2R_15791587_SNP [dm3] 2R_19904082_SNP [dm6]	C	T	1.536e^-4	0.774	INTERGENIC
2L	17640300	2L_17640300_SNP [dm3] 2L_17640300_SNP [dm6]	T	A	1.537e^-4	0.774	INTERGENIC
2R	8169495	2R_8169495_SNP [dm3] 2R_12281990_SNP [dm6]	A	T	1.545e^-4	0.774	INTRON CG42700
X	5830292	X_5830292_SNP [dm3] X_5936259_SNP [dm6]	C	A	1.546e^-4	0.774	INTRON CG3726
2L	17086517	2L_17086517_SNP [dm3] 2L_17086517_SNP [dm6]	A	C	1.559e^-4	0.774	DOWNSTREAM CR43819 INTERGENIC
2L	6499100	2L_6499100_SNP [dm3] 2L_6499100_SNP [dm6]	G	A	1.561e^-4	0.774	SYNONYMOUS_CODING CG31637 DOWNSTREAM CG9550	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9433384	3R_9433384_INS [dm3] 3R_13607662_INS [dm6]	T	TT	1.562e^-4	0.774	UTR_3_PRIME CG9759
2R	10425971	2R_10425971_SNP [dm3] 2R_14538466_SNP [dm6]	A	G	1.563e^-4	0.774	INTRON ttv
2L	1234103	2L_1234103_SNP [dm3] 2L_1234103_SNP [dm6]	A	G	1.567e^-4	0.774	INTERGENIC
3L	16284995	3L_16284995_SNP [dm3] 3L_16291895_SNP [dm6]	C	A	1.570e^-4	0.774	UPSTREAM CG13045 INTERGENIC
3R	15219999	3R_15219999_SNP [dm3] 3R_19394277_SNP [dm6]	T	C	1.576e^-4	0.774	SYNONYMOUS_CODING CG3739 INTRON Ino80	TF binding site mE1_TFBS_HSA
3R	14686647	3R_14686647_SNP [dm3] 3R_18860925_SNP [dm6]	C	A	1.576e^-4	0.774	INTERGENIC
3L	10759472	3L_10759472_SNP [dm3] 3L_10766372_SNP [dm6]	C	T	1.576e^-4	0.774	INTERGENIC
2L	12313715	2L_12313715_SNP [dm3] 2L_12313715_SNP [dm6]	T	C	1.582e^-4	0.774	DOWNSTREAM aret INTERGENIC
3L	1584202	3L_1584202_SNP [dm3] 3L_1584202_SNP [dm6]	G	A	1.585e^-4	0.774	INTRON CG13917	TF binding site mE1_TFBS_HSA
3L	6355533	3L_6355533_SNP [dm3] 3L_6362433_SNP [dm6]	C	T	1.585e^-4	0.774	INTERGENIC
3R	23988596	3R_23988596_SNP [dm3] 3R_28162874_SNP [dm6]	T	C	1.588e^-4	0.774	INTRON CG34354
2R	10427606	2R_10427606_SNP [dm3] 2R_14540101_SNP [dm6]	T	A	1.589e^-4	0.774	INTRON ttv
2R	15470811	2R_15470811_SNP [dm3] 2R_19583306_SNP [dm6]	T	C	1.601e^-4	0.776	INTRON sm
3R	24707880	3R_24707880_SNP [dm3] 3R_28882158_SNP [dm6]	A	G	1.601e^-4	0.776	SYNONYMOUS_CODING CG14527 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7688862	3R_7688862_SNP [dm3] 3R_11863140_SNP [dm6]	C	A	1.616e^-4	0.778	INTRON CG6959	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10423941	2R_10423941_INS [dm3] 2R_14536436_INS [dm6]	C	CT	1.620e^-4	0.778	INTRON ttv
2R	10423949	2R_10423949_SNP [dm3] 2R_14536444_SNP [dm6]	T	C	1.620e^-4	0.778	INTRON ttv
2L	19524218	2L_19524218_SNP [dm3] 2L_19524218_SNP [dm6]	T	G	1.622e^-4	0.778	INTRON CG10132	TF binding site mE1_TFBS_cad
3R	14686655	3R_14686655_SNP [dm3] 3R_18860933_SNP [dm6]	A	T	1.628e^-4	0.779	INTERGENIC
2L	227221	2L_227221_SNP [dm3] 2L_227221_SNP [dm6]	A	C	1.650e^-4	0.781	UPSTREAM CR44221 INTRON kis
2R	8159740	2R_8159740_DEL [dm3] 2R_12272235_DEL [dm6]	TT	T	1.651e^-4	0.781	INTRON Cam
2R	8159743	2R_8159743_SNP [dm3] 2R_12272238_SNP [dm6]	A	T	1.651e^-4	0.781	INTRON Cam
2R	19377197	2R_19377197_SNP [dm3] 2R_23489674_SNP [dm6]	G	C	1.658e^-4	0.781	INTRON CG43795
2R	8156294	2R_8156294_SNP [dm3] 2R_12268789_SNP [dm6]	G	A	1.662e^-4	0.781	INTRON Cam
2R	16307798	2R_16307798_SNP [dm3] 2R_20420293_SNP [dm6]	T	A	1.669e^-4	0.781	INTERGENIC
3L	16273044	3L_16273044_SNP [dm3] 3L_16279944_SNP [dm6]	T	C	1.672e^-4	0.781	UPSTREAM CG13050 & 1 other INTERGENIC
X	6262531	X_6262531_SNP [dm3] X_6368498_SNP [dm6]	C	A	1.673e^-4	0.781	INTRON Marf	TF binding site mE1_TFBS_sens
3L	9504677	3L_9504677_SNP [dm3] 3L_9511577_SNP [dm6]	C	T	1.673e^-4	0.781	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2383496	2L_2383496_SNP [dm3] 2L_2383496_SNP [dm6]	C	T	1.675e^-4	0.781	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt
3L	14665406	3L_14665406_SNP [dm3] 3L_14672306_SNP [dm6]	A	G	1.692e^-4	0.787	NON_SYNONYMOUS_CODING CG43121 UPSTREAM ome DOWNSTREAM dlp	TF binding site mE1_TFBS_bab1
3R	20246946	3R_20246946_SNP [dm3] 3R_24421224_SNP [dm6]	A	G	1.696e^-4	0.787	INTRON nAChRalpha1
3R	17180666	3R_17180666_DEL [dm3] 3R_21354944_DEL [dm6]	TTTTCAGCA	T	1.707e^-4	0.787	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
2L	19541837	2L_19541837_SNP [dm3] 2L_19541837_SNP [dm6]	A	G	1.714e^-4	0.787	UPSTREAM ref_2_P DOWNSTREAM CG13081 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19551123	2R_19551123_SNP [dm3] 2R_23663600_SNP [dm6]	A	G	1.719e^-4	0.787	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8167448	2R_8167448_SNP [dm3] 2R_12279943_SNP [dm6]	C	T	1.725e^-4	0.787	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
2L	17093024	2L_17093024_SNP [dm3] 2L_17093024_SNP [dm6]	T	C	1.726e^-4	0.787	INTERGENIC
3R	10874953	3R_10874953_SNP [dm3] 3R_15049231_SNP [dm6]	G	C	1.728e^-4	0.787	INTERGENIC
3R	6307583	3R_6307583_SNP [dm3] 3R_10481861_SNP [dm6]	C	A	1.740e^-4	0.787	INTERGENIC
2L	11835045	2L_11835045_SNP [dm3] 2L_11835045_SNP [dm6]	C	T	1.743e^-4	0.787	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
3L	722067	3L_722067_DEL [dm3] 3L_722067_DEL [dm6]	TGTGTGGT	T	1.745e^-4	0.787	INTERGENIC
2L	11909212	2L_11909212_SNP [dm3] 2L_11909212_SNP [dm6]	T	C	1.746e^-4	0.787	INTRON Pde1c
2L	17464659	2L_17464659_SNP [dm3] 2L_17464659_SNP [dm6]	C	A	1.751e^-4	0.787	INTRON BicD
3L	12261649	3L_12261649_SNP [dm3] 3L_12268549_SNP [dm6]	G	A	1.754e^-4	0.787	SYNONYMOUS_CODING CG32100 DOWNSTREAM Pbgs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19493123	2R_19493123_INS [dm3] 2R_23605600_INS [dm6]	C	CC	1.754e^-4	0.787	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
2R	10425790	2R_10425790_SNP [dm3] 2R_14538285_SNP [dm6]	T	C	1.755e^-4	0.787	INTRON ttv
3R	21236940	3R_21236940_SNP [dm3] 3R_25411218_SNP [dm6]	C	T	1.768e^-4	0.791	INTRON Fur1
3L	7165797	3L_7165797_SNP [dm3] 3L_7172697_SNP [dm6]	A	G	1.780e^-4	0.792	INTRON Dscam2
2L	19506514	2L_19506514_SNP [dm3] 2L_19506514_SNP [dm6]	C	G	1.781e^-4	0.792	INTRON CG10188
3R	12116000	3R_12116000_SNP [dm3] 3R_16290278_SNP [dm6]	G	A	1.795e^-4	0.792	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19776712	2L_19776712_DEL [dm3] 2L_19776712_DEL [dm6]	AAATGTGTTTGCAATAAACA...	A	1.799e^-4	0.792	UTR_3_PRIME CdGAPr
2R	8172501	2R_8172501_SNP [dm3] 2R_12284996_SNP [dm6]	A	G	1.801e^-4	0.792	INTRON CG42700
3R	12839052	3R_12839052_SNP [dm3] 3R_17013330_SNP [dm6]	A	C	1.803e^-4	0.792	DOWNSTREAM CG8907 INTERGENIC
3L	395367	3L_395367_SNP [dm3] 3L_395367_SNP [dm6]	T	C	1.809e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs
2L	13233770	2L_13233770_SNP [dm3] 2L_13233770_SNP [dm6]	A	T	1.809e^-4	0.792	DOWNSTREAM CG15479 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25924959	3R_25924959_SNP [dm3] 3R_30099237_SNP [dm6]	C	T	1.813e^-4	0.792	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9350466	2R_9350466_SNP [dm3] 2R_13462961_SNP [dm6]	A	G	1.819e^-4	0.792	INTRON arr
3R	12031709	3R_12031709_SNP [dm3] 3R_16205987_SNP [dm6]	T	C	1.820e^-4	0.792	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	10401784	2R_10401784_SNP [dm3] 2R_14514279_SNP [dm6]	C	A	1.822e^-4	0.792	SPLICE_SITE_REGION CG30197 INTRON Cpr51A & 1 other
2L	14155156	2L_14155156_SNP [dm3] 2L_14155156_SNP [dm6]	A	T	1.824e^-4	0.792	INTRON CG17341
2L	19541892	2L_19541892_SNP [dm3] 2L_19541892_SNP [dm6]	T	C	1.834e^-4	0.793	UPSTREAM ref_2_P DOWNSTREAM CG13081 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25688945	3R_25688945_SNP [dm3] 3R_29863223_SNP [dm6]	A	C	1.837e^-4	0.793	UPSTREAM snoRNA:Me28S-A2564 DOWNSTREAM Zip99C & 1 other INTRON RpS8	TF binding site mE1_TFBS_sens
3L	10144758	3L_10144758_SNP [dm3] 3L_10151658_SNP [dm6]	A	T	1.839e^-4	0.793	UPSTREAM CG8072 INTRON dpr10 EXON snoRNA:MeU2-A31
X	10428374	X_10428374_SNP [dm3] X_10534341_SNP [dm6]	A	T	1.846e^-4	0.794	INTRON spri
2L	19520845	2L_19520845_SNP [dm3] 2L_19520845_SNP [dm6]	T	C	1.853e^-4	0.794	SYNONYMOUS_CODING CG10132	TF binding site mE1_TFBS_chinmo
2R	10378918	2R_10378918_SNP [dm3] 2R_14491413_SNP [dm6]	G	T	1.859e^-4	0.794	INTRON L
2R	16304568	2R_16304568_SNP [dm3] 2R_20417063_SNP [dm6]	G	T	1.863e^-4	0.794	INTERGENIC
2L	1233860	2L_1233860_SNP [dm3] 2L_1233860_SNP [dm6]	T	G	1.863e^-4	0.794	INTERGENIC
3L	6583234	3L_6583234_SNP [dm3] 3L_6590134_SNP [dm6]	T	C	1.871e^-4	0.794	UPSTREAM jv INTRON CG18769
3L	4930015	3L_4930015_SNP [dm3] 3L_4930015_SNP [dm6]	C	T	1.872e^-4	0.794	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
X	16900118	X_16900118_SNP [dm3] X_17006085_SNP [dm6]	C	T	1.876e^-4	0.794	INTRON CG45002
3R	8966360	3R_8966360_SNP [dm3] 3R_13140638_SNP [dm6]	A	G	1.883e^-4	0.795	INTRON timeout & 2 others
3R	14938112	3R_14938112_SNP [dm3] 3R_19112390_SNP [dm6]	A	G	1.889e^-4	0.795	INTRON CG6040
2R	15508228	2R_15508228_SNP [dm3] 2R_19620723_SNP [dm6]	T	A	1.891e^-4	0.795	INTRON sm
3R	20750360	3R_20750360_SNP [dm3] 3R_24924638_SNP [dm6]	G	T	1.896e^-4	0.795	NON_SYNONYMOUS_CODING Mink UPSTREAM Trf4-2	TF binding site mE1_TFBS_cad
3L	9751809	3L_9751809_DEL [dm3] 3L_9758709_DEL [dm6]	AACTA	A	1.904e^-4	0.797	INTRON CG42268
3L	1236980	3L_1236980_SNP [dm3] 3L_1236980_SNP [dm6]	G	A	1.917e^-4	0.799	SYNONYMOUS_CODING CG9194 DOWNSTREAM CG9192
3L	16272161	3L_16272161_SNP [dm3] 3L_16279061_SNP [dm6]	G	A	1.917e^-4	0.799	NON_SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
2L	10446437	2L_10446437_SNP [dm3] 2L_10446437_SNP [dm6]	A	C	1.925e^-4	0.8	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10423951	2R_10423951_SNP [dm3] 2R_14536446_SNP [dm6]	C	T	1.933e^-4	0.802	INTRON ttv
3R	7703467	3R_7703467_SNP [dm3] 3R_11877745_SNP [dm6]	T	C	1.947e^-4	0.804	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3470369	2L_3470369_SNP [dm3] 2L_3470369_SNP [dm6]	G	T	1.953e^-4	0.804	NON_SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19523728	2L_19523728_SNP [dm3] 2L_19523728_SNP [dm6]	T	C	1.958e^-4	0.804	SYNONYMOUS_CODING CG10132	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18851748	3R_18851748_SNP [dm3] 3R_23026026_SNP [dm6]	G	A	1.959e^-4	0.804	SYNONYMOUS_CODING lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19340135	3L_19340135_SNP [dm3] 3L_19347035_SNP [dm6]	A	C	1.960e^-4	0.804	INTRON CG32206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17966735	X_17966735_SNP [dm3] X_18072702_SNP [dm6]	T	C	1.964e^-4	0.804	SYNONYMOUS_CODING Dhc16F
2R	8171855	2R_8171855_DEL [dm3] 2R_12284350_DEL [dm6]	TTTGGCCCAAGATATTTTCC...	T	1.982e^-4	0.806	INTRON CG42700
2R	17685083	2R_17685083_DEL [dm3] 2R_21797578_DEL [dm6]	GTC	G	1.982e^-4	0.806	DOWNSTREAM CG34204 & 1 other INTERGENIC
3R	25244403	3R_25244403_SNP [dm3] 3R_29418681_SNP [dm6]	T	C	1.982e^-4	0.806	INTRON Ptp99A
3R	23157917	3R_23157917_SNP [dm3] 3R_27332195_SNP [dm6]	G	A	1.988e^-4	0.807	INTERGENIC
2L	19418121	2L_19418121_SNP [dm3] 2L_19418121_SNP [dm6]	T	A	2.002e^-4	0.81	UTR_3_PRIME Lectin-galC1 UPSTREAM lectin-37Da & 1 other INTRON Pax
2L	11835040	2L_11835040_SNP [dm3] 2L_11835040_SNP [dm6]	T	A	2.015e^-4	0.81	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	1953779	2L_1953779_INS [dm3] 2L_1953779_INS [dm6]	G	GCGG	2.016e^-4	0.81	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20822569	X_20822569_SNP [dm3] X_20951542_SNP [dm6]	A	G	2.021e^-4	0.81	INTERGENIC
3R	13969867	3R_13969867_SNP [dm3] 3R_18144145_SNP [dm6]	T	C	2.022e^-4	0.81	INTERGENIC
2L	19541933	2L_19541933_SNP [dm3] 2L_19541933_SNP [dm6]	A	C	2.023e^-4	0.81	UPSTREAM ref_2_P DOWNSTREAM CG13081 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4207198	X_4207198_DEL [dm3] X_4313165_DEL [dm6]	GGTGGGG	G	2.027e^-4	0.81	INTRON CR44957
3L	395363	3L_395363_SNP [dm3] 3L_395363_SNP [dm6]	T	A	2.030e^-4	0.81	INTERGENIC	regulatory region REDfly_CRMs
3R	22076915	3R_22076915_SNP [dm3] 3R_26251193_SNP [dm6]	T	G	2.038e^-4	0.81	INTRON CR42745
2R	4456938	2R_4456938_SNP [dm3] 2R_8569433_SNP [dm6]	T	G	2.042e^-4	0.81	EXON Cyp6a15Psi
2R	15151548	2R_15151548_SNP [dm3] 2R_19264043_SNP [dm6]	C	A	2.044e^-4	0.81	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	23781651	3R_23781651_SNP [dm3] 3R_27955929_SNP [dm6]	T	G	2.053e^-4	0.812	NON_SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4888091	2L_4888091_SNP [dm3] 2L_4888091_SNP [dm6]	A	G	2.077e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4888093	2L_4888093_DEL [dm3] 2L_4888093_DEL [dm6]	AT	A	2.077e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16512049	3L_16512049_SNP [dm3] 3L_16518949_SNP [dm6]	T	A	2.078e^-4	0.815	INTRON CG43373
X	19906366	X_19906366_SNP [dm3] X_20012333_SNP [dm6]	T	C	2.084e^-4	0.815	INTRON Dop2R
3L	3626919	3L_3626919_SNP [dm3] 3L_3626919_SNP [dm6]	C	T	2.090e^-4	0.815	UTR_5_PRIME dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	493972	2L_493972_SNP [dm3] 2L_493972_SNP [dm6]	T	A	2.092e^-4	0.815	INTRON ush
2L	10338164	2L_10338164_SNP [dm3] 2L_10338164_SNP [dm6]	A	T	2.096e^-4	0.815	INTRON GATAd
2L	14159418	2L_14159418_SNP [dm3] 2L_14159418_SNP [dm6]	G	T	2.096e^-4	0.815	UTR_3_PRIME CG17341
3L	9746566	3L_9746566_SNP [dm3] 3L_9753466_SNP [dm6]	C	A	2.106e^-4	0.816	INTRON CG42268
3R	15166857	3R_15166857_SNP [dm3] 3R_19341135_SNP [dm6]	G	A	2.108e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13971327	3R_13971327_SNP [dm3] 3R_18145605_SNP [dm6]	G	A	2.119e^-4	0.816	INTERGENIC
2R	12177603	2R_12177603_SNP [dm3] 2R_16290098_SNP [dm6]	C	T	2.119e^-4	0.816	SYNONYMOUS_CODING JhI-26 EXON CR43730
2R	2850767	2R_2850767_SNP [dm3] 2R_6963262_SNP [dm6]	G	A	2.122e^-4	0.816	INTRON mim & 1 other
2L	12299026	2L_12299026_SNP [dm3] 2L_12299026_SNP [dm6]	T	C	2.123e^-4	0.816	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8171791	2R_8171791_SNP [dm3] 2R_12284286_SNP [dm6]	T	C	2.129e^-4	0.816	INTRON CG42700
3R	10036195	3R_10036195_SNP [dm3] 3R_14210473_SNP [dm6]	G	A	2.141e^-4	0.817	INTRON Dop1R1
3R	7690516	3R_7690516_SNP [dm3] 3R_11864794_SNP [dm6]	C	T	2.141e^-4	0.817	INTRON CG6959
2R	8530037	2R_8530037_SNP [dm3] 2R_12642532_SNP [dm6]	C	A	2.145e^-4	0.817	INTRON CG8785
2R	8166807	2R_8166807_DEL [dm3] 2R_12279302_DEL [dm6]	AA	A	2.159e^-4	0.819	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	15739626	3R_15739626_SNP [dm3] 3R_19913904_SNP [dm6]	C	A	2.183e^-4	0.819	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others
3R	12031802	3R_12031802_SNP [dm3] 3R_16206080_SNP [dm6]	T	A	2.184e^-4	0.819	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	18881939	2R_18881939_SNP [dm3] 2R_22994416_SNP [dm6]	C	G	2.192e^-4	0.819	UTR_3_PRIME CG9896 INTRON twi
2R	10412658	2R_10412658_SNP [dm3] 2R_14525153_SNP [dm6]	G	A	2.196e^-4	0.819	INTERGENIC
3R	26400608	3R_26400608_SNP [dm3] 3R_30574886_SNP [dm6]	A	T	2.197e^-4	0.819	UTR_3_PRIME tmod INTRON tmod
3L	1584219	3L_1584219_SNP [dm3] 3L_1584219_SNP [dm6]	T	C	2.198e^-4	0.819	INTRON CG13917	TF binding site mE1_TFBS_HSA
2L	15199406	2L_15199406_SNP [dm3] 2L_15199406_SNP [dm6]	C	T	2.204e^-4	0.819	INTRON CG4168
2L	10338186	2L_10338186_SNP [dm3] 2L_10338186_SNP [dm6]	T	G	2.210e^-4	0.819	INTRON GATAd
3R	24931560	3R_24931560_SNP [dm3] 3R_29105838_SNP [dm6]	T	A	2.212e^-4	0.819	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22282256	3R_22282256_SNP [dm3] 3R_26456534_SNP [dm6]	T	C	2.218e^-4	0.819	UPSTREAM CG14237 & 1 other INTERGENIC
X	10428392	X_10428392_SNP [dm3] X_10534359_SNP [dm6]	G	C	2.221e^-4	0.819	INTRON spri
3L	7542753	3L_7542753_SNP [dm3] 3L_7549653_SNP [dm6]	G	A	2.231e^-4	0.819	INTERGENIC
3R	22807978	3R_22807978_SNP [dm3] 3R_26982256_SNP [dm6]	G	A	2.232e^-4	0.819	INTRON CG14253
2L	17464648	2L_17464648_SNP [dm3] 2L_17464648_SNP [dm6]	C	G	2.247e^-4	0.819	INTRON BicD
3L	5590881	3L_5590881_SNP [dm3] 3L_5597781_SNP [dm6]	A	G	2.248e^-4	0.819	DOWNSTREAM CG5150 & 1 other INTERGENIC
2R	8171822	2R_8171822_SNP [dm3] 2R_12284317_SNP [dm6]	A	C	2.251e^-4	0.819	INTRON CG42700
2L	7237932	2L_7237932_SNP [dm3] 2L_7237932_SNP [dm6]	T	A	2.252e^-4	0.819	INTRON Ndae1
2L	15193900	2L_15193900_SNP [dm3] 2L_15193900_SNP [dm6]	C	A	2.266e^-4	0.819	INTRON CG4168
2L	15193906	2L_15193906_SNP [dm3] 2L_15193906_SNP [dm6]	C	T	2.270e^-4	0.819	INTRON CG4168
3R	9735938	3R_9735938_SNP [dm3] 3R_13910216_SNP [dm6]	A	C	2.277e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	10073555	2L_10073555_SNP [dm3] 2L_10073555_SNP [dm6]	G	A	2.282e^-4	0.819	INTRON CG44153
3L	14495504	3L_14495504_SNP [dm3] 3L_14502404_SNP [dm6]	C	A	2.298e^-4	0.819	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	18810814	3L_18810814_SNP [dm3] 3L_18817714_SNP [dm6]	T	C	2.302e^-4	0.819	INTRON CG14073
3R	9928745	3R_9928745_SNP [dm3] 3R_14103023_SNP [dm6]	G	A	2.305e^-4	0.819	UTR_5_PRIME PK1-R UPSTREAM PK1-R
2L	19520831	2L_19520831_SNP [dm3] 2L_19520831_SNP [dm6]	C	G	2.307e^-4	0.819	NON_SYNONYMOUS_CODING CG10132	TF binding site mE1_TFBS_chinmo
2L	12600824	2L_12600824_SNP [dm3] 2L_12600824_SNP [dm6]	A	T	2.313e^-4	0.819	INTRON nub
3R	6130454	3R_6130454_SNP [dm3] 3R_10304732_SNP [dm6]	C	A	2.323e^-4	0.819	NON_SYNONYMOUS_CODING CG43143
3L	21048056	3L_21048056_SNP [dm3] 3L_21054956_SNP [dm6]	G	T	2.323e^-4	0.819	INTRON siz	TF binding site BDTNP1_TFBS_dl
X	15585408	X_15585408_DEL [dm3] X_15691375_DEL [dm6]	TTAAC	G	2.330e^-4	0.819	UPSTREAM CR45523 DOWNSTREAM CG43132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	23486479	3R_23486479_SNP [dm3] 3R_27660757_SNP [dm6]	G	T	2.333e^-4	0.819	UPSTREAM Mlc1 INTERGENIC
2R	15434153	2R_15434153_SNP [dm3] 2R_19546648_SNP [dm6]	C	T	2.338e^-4	0.819	SYNONYMOUS_CODING sm INTRON sm	TF binding site mE1_TFBS_cnc
2R	8528217	2R_8528217_DEL [dm3] 2R_12640712_DEL [dm6]	TTA	T	2.340e^-4	0.819	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
2R	8165920	2R_8165920_SNP [dm3] 2R_12278415_SNP [dm6]	C	A	2.348e^-4	0.819	UTR_3_PRIME Cam
2R	10110866	2R_10110866_SNP [dm3] 2R_14223361_SNP [dm6]	T	C	2.350e^-4	0.819	INTRON CG8468
2L	7404094	2L_7404094_SNP [dm3] 2L_7404094_SNP [dm6]	G	A	2.352e^-4	0.819	SYNONYMOUS_CODING CG5171
3R	13905877	3R_13905877_SNP [dm3] 3R_18080155_SNP [dm6]	C	T	2.353e^-4	0.819	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	7686596	3R_7686596_SNP [dm3] 3R_11860874_SNP [dm6]	T	C	2.356e^-4	0.819	INTRON CG6959
3L	6998227	3L_6998227_SNP [dm3] 3L_7005127_SNP [dm6]	C	T	2.356e^-4	0.819	INTRON Mp
2R	8171808	2R_8171808_SNP [dm3] 2R_12284303_SNP [dm6]	A	G	2.357e^-4	0.819	INTRON CG42700
3R	12607290	3R_12607290_SNP [dm3] 3R_16781568_SNP [dm6]	T	C	2.358e^-4	0.819	INTERGENIC
X	16900149	X_16900149_SNP [dm3] X_17006116_SNP [dm6]	A	G	2.362e^-4	0.819	INTRON CG45002
2R	2480936	2R_2480936_SNP [dm3] 2R_6593431_SNP [dm6]	C	T	2.371e^-4	0.819	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	22369809	X_22369809_SNP [dm3] X_22967973_SNP [dm6]	G	A	2.374e^-4	0.819	INTERGENIC
2L	11834933	2L_11834933_DEL [dm3] 2L_11834933_DEL [dm6]	AA	A	2.378e^-4	0.819	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
3R	23300301	3R_23300301_SNP [dm3] 3R_27474579_SNP [dm6]	G	C	2.378e^-4	0.819	INTERGENIC
3R	9873660	3R_9873660_INS [dm3] 3R_14047938_INS [dm6]	A	GC	2.380e^-4	0.819	INTERGENIC
2R	8166341	2R_8166341_INS [dm3] 2R_12278836_INS [dm6]	T	TGTGTTGTG	2.385e^-4	0.819	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2L	1088666	2L_1088666_SNP [dm3] 2L_1088666_SNP [dm6]	T	C	2.386e^-4	0.819	INTRON CG4629
2R	10612245	2R_10612245_SNP [dm3] 2R_14724740_SNP [dm6]	T	A	2.388e^-4	0.819	INTERGENIC
X	19906584	X_19906584_SNP [dm3] X_20012551_SNP [dm6]	G	A	2.393e^-4	0.819	INTRON Dop2R
2R	8171793	2R_8171793_SNP [dm3] 2R_12284288_SNP [dm6]	T	A	2.395e^-4	0.819	INTRON CG42700
2R	10421362	2R_10421362_INS [dm3] 2R_14533857_INS [dm6]	A	AGAG	2.396e^-4	0.819	INTRON ttv
2L	11679606	2L_11679606_SNP [dm3] 2L_11679606_SNP [dm6]	T	G	2.400e^-4	0.819	INTERGENIC
2L	19530959	2L_19530959_SNP [dm3] 2L_19530959_SNP [dm6]	G	A	2.418e^-4	0.819	SYNONYMOUS_CODING CG10137 UPSTREAM CG10165	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7109222	2L_7109222_SNP [dm3] 2L_7109222_SNP [dm6]	C	G	2.420e^-4	0.819	INTRON Pvf3
3L	395360	3L_395360_SNP [dm3] 3L_395360_SNP [dm6]	G	A	2.423e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs
2R	8530578	2R_8530578_SNP [dm3] 2R_12643073_SNP [dm6]	C	T	2.430e^-4	0.819	INTRON CG8785
2L	16205626	2L_16205626_SNP [dm3] 2L_16205626_SNP [dm6]	T	A	2.435e^-4	0.819	INTERGENIC
3R	21668868	3R_21668868_SNP [dm3] 3R_25843146_SNP [dm6]	C	T	2.435e^-4	0.819	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
3L	3976278	3L_3976278_SNP [dm3] 3L_3976278_SNP [dm6]	C	G	2.441e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12005947	3L_12005947_SNP [dm3] 3L_12012847_SNP [dm6]	G	T	2.445e^-4	0.819	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17094705	2L_17094705_SNP [dm3] 2L_17094705_SNP [dm6]	G	A	2.446e^-4	0.819	INTERGENIC
X	21909050	X_21909050_SNP [dm3] X_22507214_SNP [dm6]	A	C	2.449e^-4	0.819	SYNONYMOUS_CODING l_1_G0196
3L	10937123	3L_10937123_SNP [dm3] 3L_10944023_SNP [dm6]	A	C	2.452e^-4	0.819	UPSTREAM CG34050 INTERGENIC
2L	9685574	2L_9685574_SNP [dm3] 2L_9685574_SNP [dm6]	T	A	2.452e^-4	0.819	INTRON Pka-C1
2L	20527170	2L_20527170_SNP [dm3] 2L_20527170_SNP [dm6]	C	G	2.455e^-4	0.819	INTERGENIC
2L	9464744	2L_9464744_MNP [dm3] 2L_9464744_MNP [dm6]	GAAT	ATTG	2.461e^-4	0.819	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22494960	3R_22494960_DEL [dm3] 3R_26669238_DEL [dm6]	TGTGGC	T	2.467e^-4	0.819	INTRON beat-VII
3L	17115076	3L_17115076_SNP [dm3] 3L_17121976_SNP [dm6]	G	T	2.472e^-4	0.819	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	22014813	3R_22014813_SNP [dm3] 3R_26189091_SNP [dm6]	G	A	2.473e^-4	0.819	SYNONYMOUS_CODING CG34130 UPSTREAM CG6073	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15215055	2L_15215055_SNP [dm3] 2L_15215055_SNP [dm6]	G	C	2.478e^-4	0.819	UPSTREAM CG43230 INTERGENIC
3R	22282120	3R_22282120_SNP [dm3] 3R_26456398_SNP [dm6]	A	T	2.478e^-4	0.819	UPSTREAM CG14237 & 1 other INTERGENIC
3L	4951222	3L_4951222_SNP [dm3] 3L_4951222_SNP [dm6]	T	A	2.480e^-4	0.819	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	10085747	2L_10085747_SNP [dm3] 2L_10085747_SNP [dm6]	G	A	2.492e^-4	0.819	INTRON CG44153
2L	3411960	2L_3411960_DEL [dm3] 2L_3411960_DEL [dm6]	AATAA	A	2.494e^-4	0.819	DOWNSTREAM CG8840 INTRON pgant2
2R	8170854	2R_8170854_SNP [dm3] 2R_12283349_SNP [dm6]	C	T	2.503e^-4	0.819	INTRON CG42700
3L	5483538	3L_5483538_DEL [dm3] 3L_5490438_DEL [dm6]	CGTTCTTTCATCCCCGAGAC...	C	2.507e^-4	0.819	INTERGENIC
2L	16991628	2L_16991628_SNP [dm3] 2L_16991628_SNP [dm6]	A	T	2.512e^-4	0.819	INTRON beat-IIIb
3L	6358051	3L_6358051_SNP [dm3] 3L_6364951_SNP [dm6]	G	A	2.517e^-4	0.819	INTERGENIC
2L	7109217	2L_7109217_SNP [dm3] 2L_7109217_SNP [dm6]	C	A	2.517e^-4	0.819	INTRON Pvf3
X	10088551	X_10088551_SNP [dm3] X_10194518_SNP [dm6]	G	A	2.518e^-4	0.819	UTR_3_PRIME CG43902 INTRON CR44894
2R	14074383	2R_14074383_SNP [dm3] 2R_18186878_SNP [dm6]	A	G	2.522e^-4	0.819	UPSTREAM CG14499 INTRON CG33958
3R	12031715	3R_12031715_SNP [dm3] 3R_16205993_SNP [dm6]	G	T	2.524e^-4	0.819	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	5860966	2L_5860966_SNP [dm3] 2L_5860966_SNP [dm6]	A	G	2.526e^-4	0.819	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22408120	3R_22408120_SNP [dm3] 3R_26582398_SNP [dm6]	G	A	2.528e^-4	0.819	DOWNSTREAM scrib INTRON scrib
3L	18811191	3L_18811191_SNP [dm3] 3L_18818091_SNP [dm6]	G	A	2.530e^-4	0.819	INTRON CG14073
3R	7665317	3R_7665317_INS [dm3] 3R_11839595_INS [dm6]	T	TT	2.539e^-4	0.821	INTRON CG6959
3R	21327962	3R_21327962_SNP [dm3] 3R_25502240_SNP [dm6]	C	T	2.544e^-4	0.821	UPSTREAM CR43457 EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8166810	2R_8166810_SNP [dm3] 2R_12279305_SNP [dm6]	A	T	2.548e^-4	0.821	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	13696584	3R_13696584_SNP [dm3] 3R_17870862_SNP [dm6]	G	T	2.562e^-4	0.821	UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
2R	13098918	2R_13098918_SNP [dm3] 2R_17211413_SNP [dm6]	C	A	2.562e^-4	0.821	INTERGENIC
3R	3144244	3R_3144244_DEL [dm3] 3R_7318522_DEL [dm6]	ATAGTAT	A	2.577e^-4	0.821	INTERGENIC
3R	13905974	3R_13905974_SNP [dm3] 3R_18080252_SNP [dm6]	C	A	2.597e^-4	0.821	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8949995	3L_8949995_SNP [dm3] 3L_8956895_SNP [dm6]	T	A	2.599e^-4	0.821	DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2618833	X_2618833_SNP [dm3] X_2724800_SNP [dm6]	A	T	2.599e^-4	0.821	NON_SYNONYMOUS_CODING fs_1_Ya DOWNSTREAM fs_1_Yb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8511259	3R_8511259_SNP [dm3] 3R_12685537_SNP [dm6]	C	G	2.599e^-4	0.821	INTRON kar
3L	10932900	3L_10932900_SNP [dm3] 3L_10939800_SNP [dm6]	C	G	2.604e^-4	0.821	INTERGENIC
2L	17015506	2L_17015506_SNP [dm3] 2L_17015506_SNP [dm6]	G	A	2.604e^-4	0.821	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	19547463	2L_19547463_SNP [dm3] 2L_19547463_SNP [dm6]	A	G	2.607e^-4	0.821	UPSTREAM CG10337 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19660681	3R_19660681_SNP [dm3] 3R_23834959_SNP [dm6]	C	T	2.607e^-4	0.821	INTRON CG34355
2R	8167458	2R_8167458_SNP [dm3] 2R_12279953_SNP [dm6]	C	T	2.616e^-4	0.821	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3L	17508764	3L_17508764_SNP [dm3] 3L_17515664_SNP [dm6]	T	C	2.618e^-4	0.821	SYNONYMOUS_CODING CG7564	TF binding site mE1_TFBS_cad
3R	22495174	3R_22495174_SNP [dm3] 3R_26669452_SNP [dm6]	G	A	2.622e^-4	0.821	INTRON beat-VII
3R	13513799	3R_13513799_SNP [dm3] 3R_17688077_SNP [dm6]	T	G	2.624e^-4	0.821	UTR_3_PRIME osa
X	4959699	X_4959699_SNP [dm3] X_5065666_SNP [dm6]	C	T	2.624e^-4	0.821	SYNONYMOUS_CODING ovo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19453788	2R_19453788_SNP [dm3] 2R_23566265_SNP [dm6]	T	C	2.632e^-4	0.821	INTRON apt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22713668	3R_22713668_SNP [dm3] 3R_26887946_SNP [dm6]	T	G	2.634e^-4	0.821	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	6262561	X_6262561_SNP [dm3] X_6368528_SNP [dm6]	T	C	2.635e^-4	0.821	SPLICE_SITE_REGION Marf SYNONYMOUS_CODING Marf	TF binding site mE1_TFBS_sens
2R	19067671	2R_19067671_SNP [dm3] 2R_23180148_SNP [dm6]	T	C	2.642e^-4	0.821	INTRON CG34371
2R	8768736	2R_8768736_SNP [dm3] 2R_12881231_SNP [dm6]	T	A	2.643e^-4	0.821	SYNONYMOUS_CODING Aats-asp DOWNSTREAM CR45141	TF binding site BDTNP1_TFBS_dl
X	14711720	X_14711720_SNP [dm3] X_14817687_SNP [dm6]	T	A	2.656e^-4	0.821	INTRON rut
3R	16631978	3R_16631978_SNP [dm3] 3R_20806256_SNP [dm6]	A	G	2.656e^-4	0.821	UTR_3_PRIME Syp DOWNSTREAM Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14321676	3L_14321676_INS [dm3] 3L_14328576_INS [dm6]	A	AA	2.668e^-4	0.821	UPSTREAM CG13482 INTRON fz
3R	23800336	3R_23800336_SNP [dm3] 3R_27974614_SNP [dm6]	C	A	2.670e^-4	0.821	INTRON betaTub97EF
3R	17511046	3R_17511046_SNP [dm3] 3R_21685324_SNP [dm6]	A	G	2.671e^-4	0.821	INTRON CG31176
2R	8159296	2R_8159296_SNP [dm3] 2R_12271791_SNP [dm6]	T	A	2.674e^-4	0.821	INTRON Cam
3L	7090253	3L_7090253_SNP [dm3] 3L_7097153_SNP [dm6]	G	A	2.679e^-4	0.821	INTRON form3
X	3247252	X_3247252_SNP [dm3] X_3353219_SNP [dm6]	A	C	2.682e^-4	0.821	INTERGENIC
2R	10419004	2R_10419004_SNP [dm3] 2R_14531499_SNP [dm6]	G	A	2.694e^-4	0.821	INTRON ttv
3R	17863618	3R_17863618_SNP [dm3] 3R_22037896_SNP [dm6]	A	C	2.695e^-4	0.821	INTRON pit
3R	15740058	3R_15740058_DEL [dm3] 3R_19914336_DEL [dm6]	AT	A	2.703e^-4	0.821	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
3L	12005917	3L_12005917_SNP [dm3] 3L_12012817_SNP [dm6]	A	G	2.708e^-4	0.821	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22021849	3R_22021849_SNP [dm3] 3R_26196127_SNP [dm6]	G	C	2.715e^-4	0.821	INTRON CR44320
3L	7950347	3L_7950347_SNP [dm3] 3L_7957247_SNP [dm6]	A	C	2.716e^-4	0.821	INTERGENIC
3L	17129467	3L_17129467_SNP [dm3] 3L_17136367_SNP [dm6]	A	C	2.719e^-4	0.821	INTRON Rbp6
3R	23927785	3R_23927785_SNP [dm3] 3R_28102063_SNP [dm6]	G	A	2.720e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9943133	3L_9943133_SNP [dm3] 3L_9950033_SNP [dm6]	C	A	2.736e^-4	0.821	INTRON CG34356
2R	5819685	2R_5819685_SNP [dm3] 2R_9932180_SNP [dm6]	G	C	2.737e^-4	0.821	INTRON Mef2	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11277663	X_11277663_INS [dm3] X_11383630_INS [dm6]	A	ATGTA	2.740e^-4	0.821	INTRON dlg1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21280220	3R_21280220_SNP [dm3] 3R_25454498_SNP [dm6]	T	G	2.746e^-4	0.821	INTRON Fur1
3L	5590864	3L_5590864_DEL [dm3] 3L_5597764_DEL [dm6]	AA	A	2.751e^-4	0.821	DOWNSTREAM CG5150 & 1 other INTERGENIC
3L	14321690	3L_14321690_SNP [dm3] 3L_14328590_SNP [dm6]	T	A	2.754e^-4	0.821	UPSTREAM CG13482 INTRON fz
3R	17089085	3R_17089085_SNP [dm3] 3R_21263363_SNP [dm6]	G	A	2.754e^-4	0.821	UTR_3_PRIME ETHR INTRON ETHR	TF binding site mE1_TFBS_cad
3R	10694408	3R_10694408_SNP [dm3] 3R_14868686_SNP [dm6]	G	T	2.755e^-4	0.821	INTRON btsz
3R	27285007	3R_27285007_SNP [dm3] 3R_31459285_SNP [dm6]	C	G	2.763e^-4	0.821	NON_SYNONYMOUS_CODING lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14321657	3L_14321657_INS [dm3] 3L_14328557_INS [dm6]	T	GGAACA	2.766e^-4	0.821	UPSTREAM CG13482 INTRON fz
2R	10429772	2R_10429772_SNP [dm3] 2R_14542267_SNP [dm6]	C	T	2.771e^-4	0.821	INTRON ttv
2R	15508134	2R_15508134_SNP [dm3] 2R_19620629_SNP [dm6]	A	G	2.780e^-4	0.821	INTRON sm
3R	20750118	3R_20750118_SNP [dm3] 3R_24924396_SNP [dm6]	A	T	2.790e^-4	0.821	UPSTREAM Trf4-2 INTRON Mink	TF binding site mE1_TFBS_cad
X	20860900	X_20860900_SNP [dm3] X_20989873_SNP [dm6]	C	T	2.792e^-4	0.821	INTERGENIC
3L	21056245	3L_21056245_SNP [dm3] 3L_21063145_SNP [dm6]	T	C	2.795e^-4	0.821	INTRON siz
3R	13906238	3R_13906238_SNP [dm3] 3R_18080516_SNP [dm6]	G	A	2.796e^-4	0.821	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14318892	2L_14318892_SNP [dm3] 2L_14318892_SNP [dm6]	C	T	2.796e^-4	0.821	INTRON wb	TF binding site mE1_TFBS_bab1
3R	27323010	3R_27323010_DEL [dm3] 3R_31497288_DEL [dm6]	AT	A	2.807e^-4	0.821	INTERGENIC
2R	17145539	2R_17145539_SNP [dm3] 2R_21258034_SNP [dm6]	C	G	2.807e^-4	0.821	INTRON Rgk3
3R	22021222	3R_22021222_INS [dm3] 3R_26195500_INS [dm6]	C	CATC	2.811e^-4	0.821	EXON CR44320	TF binding site mE1_TFBS_inv
3R	17022073	3R_17022073_SNP [dm3] 3R_21196351_SNP [dm6]	C	T	2.812e^-4	0.821	INTRON SNF4Agamma
3R	25924900	3R_25924900_SNP [dm3] 3R_30099178_SNP [dm6]	A	G	2.823e^-4	0.821	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14321708	3L_14321708_SNP [dm3] 3L_14328608_SNP [dm6]	A	C	2.823e^-4	0.821	UPSTREAM CG13482 INTRON fz
2R	11423931	2R_11423931_SNP [dm3] 2R_15536426_SNP [dm6]	C	A	2.834e^-4	0.821	SPLICE_SITE_REGION CG30471 SYNONYMOUS_CODING CG30471
3L	7016545	3L_7016545_SNP [dm3] 3L_7023445_SNP [dm6]	G	C	2.835e^-4	0.821	INTRON Mp
2L	19527813	2L_19527813_SNP [dm3] 2L_19527813_SNP [dm6]	C	A	2.837e^-4	0.821	SYNONYMOUS_CODING CG10165 INTRON CG10137
2R	10420474	2R_10420474_SNP [dm3] 2R_14532969_SNP [dm6]	A	C	2.838e^-4	0.821	INTRON ttv
3R	18620906	3R_18620906_MNP [dm3] 3R_22795184_MNP [dm6]	TTT	AAG	2.842e^-4	0.821	INTERGENIC
2L	6974016	2L_6974016_SNP [dm3] 2L_6974016_SNP [dm6]	A	G	2.845e^-4	0.821	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	22021695	3R_22021695_DEL [dm3] 3R_26195973_DEL [dm6]	TT	T	2.852e^-4	0.821	INTRON CR44320
X	2487980	X_2487980_SNP [dm3] X_2593947_SNP [dm6]	C	T	2.862e^-4	0.821	INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13921445	3R_13921445_SNP [dm3] 3R_18095723_SNP [dm6]	C	T	2.875e^-4	0.821	SPLICE_SITE_REGION sr INTRON sr
3L	15697266	3L_15697266_SNP [dm3] 3L_15704166_SNP [dm6]	A	G	2.885e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8181391	2R_8181391_SNP [dm3] 2R_12293886_SNP [dm6]	A	G	2.886e^-4	0.821	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10057639	3R_10057639_SNP [dm3] 3R_14231917_SNP [dm6]	T	A	2.888e^-4	0.821	INTERGENIC
2L	2551149	2L_2551149_SNP [dm3] 2L_2551149_SNP [dm6]	G	A	2.891e^-4	0.821	UTR_3_PRIME CG3515
2R	10421072	2R_10421072_SNP [dm3] 2R_14533567_SNP [dm6]	T	C	2.892e^-4	0.821	INTRON ttv
X	5074169	X_5074169_SNP [dm3] X_5180136_SNP [dm6]	C	T	2.901e^-4	0.821	DOWNSTREAM CG5062 INTRON rg & 1 other
3L	1245212	3L_1245212_SNP [dm3] 3L_1245212_SNP [dm6]	C	G	2.905e^-4	0.821	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG32318	TF binding site mE1_TFBS_sens
2R	9051857	2R_9051857_SNP [dm3] 2R_13164352_SNP [dm6]	C	T	2.905e^-4	0.821	SYNONYMOUS_CODING GLaz UPSTREAM CG15870 DOWNSTREAM Nrk
2R	10379775	2R_10379775_SNP [dm3] 2R_14492270_SNP [dm6]	T	A	2.907e^-4	0.821	INTRON L	TF binding site mE1_TFBS_cad
2L	1291690	2L_1291690_SNP [dm3] 2L_1291690_SNP [dm6]	G	A	2.918e^-4	0.821	INTRON robo3
3R	21064407	3R_21064407_SNP [dm3] 3R_25238685_SNP [dm6]	T	C	2.921e^-4	0.821	SYNONYMOUS_CODING CG11852
2R	10420185	2R_10420185_SNP [dm3] 2R_14532680_SNP [dm6]	A	T	2.922e^-4	0.821	INTRON ttv
2R	8530610	2R_8530610_SNP [dm3] 2R_12643105_SNP [dm6]	G	A	2.924e^-4	0.821	INTRON CG8785
3L	4930009	3L_4930009_SNP [dm3] 3L_4930009_SNP [dm6]	G	T	2.930e^-4	0.821	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
2R	19405756	2R_19405756_SNP [dm3] 2R_23518233_SNP [dm6]	T	C	2.932e^-4	0.821	INTERGENIC
2L	1234176	2L_1234176_SNP [dm3] 2L_1234176_SNP [dm6]	C	A	2.935e^-4	0.821	INTERGENIC
3R	22705771	3R_22705771_SNP [dm3] 3R_26880049_SNP [dm6]	G	T	2.939e^-4	0.821	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	13892300	3R_13892300_DEL [dm3] 3R_18066578_DEL [dm6]	CA	C	2.939e^-4	0.821	INTERGENIC
2R	8170737	2R_8170737_SNP [dm3] 2R_12283232_SNP [dm6]	G	A	2.944e^-4	0.821	INTRON CG42700
3L	9504925	3L_9504925_INS [dm3] 3L_9511825_INS [dm6]	C	CGCC	2.948e^-4	0.821	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	16574599	2L_16574599_SNP [dm3] 2L_16574599_SNP [dm6]	G	A	2.955e^-4	0.821	INTRON CG42389
3R	22087551	3R_22087551_SNP [dm3] 3R_26261829_SNP [dm6]	A	G	2.956e^-4	0.821	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
2R	10423978	2R_10423978_SNP [dm3] 2R_14536473_SNP [dm6]	A	C	2.959e^-4	0.821	INTRON ttv
2L	12056274	2L_12056274_SNP [dm3] 2L_12056274_SNP [dm6]	T	A	2.966e^-4	0.821	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	12056275	2L_12056275_SNP [dm3] 2L_12056275_SNP [dm6]	C	A	2.966e^-4	0.821	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	21837132	3R_21837132_SNP [dm3] 3R_26011410_SNP [dm6]	G	A	2.967e^-4	0.821	UTR_3_PRIME E_spl_malpha-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	6384483	2R_6384483_DEL [dm3] 2R_10496978_DEL [dm6]	CCGCGC	C	2.968e^-4	0.821	UTR_3_PRIME lola INTRON lola	TF binding site mE1_TFBS_cad
2L	9796768	2L_9796768_SNP [dm3] 2L_9796768_SNP [dm6]	T	C	2.974e^-4	0.821	UTR_3_PRIME nAChRalpha6 DOWNSTREAM nAChRalpha6
2L	19528998	2L_19528998_SNP [dm3] 2L_19528998_SNP [dm6]	T	C	2.977e^-4	0.821	SPLICE_SITE_ACCEPTOR CG10165 UPSTREAM CG10165 INTRON CG10165 & 1 other
3R	7672120	3R_7672120_SNP [dm3] 3R_11846398_SNP [dm6]	A	T	2.998e^-4	0.821	INTRON CG6959
2R	7422707	2R_7422707_SNP [dm3] 2R_11535202_SNP [dm6]	T	C	3.000e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7676449	3R_7676449_DEL [dm3] 3R_11850727_DEL [dm6]	CAAGTGGGA	C	3.010e^-4	0.821	INTRON CG6959	TF binding site mE1_TFBS_Trl
3L	4948249	3L_4948249_SNP [dm3] 3L_4948249_SNP [dm6]	T	C	3.016e^-4	0.821	INTRON Con
3R	7702810	3R_7702810_SNP [dm3] 3R_11877088_SNP [dm6]	G	A	3.016e^-4	0.821	UPSTREAM sad INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7960719	X_7960719_DEL [dm3] X_8066686_DEL [dm6]	GATATGTG	G	3.020e^-4	0.821	INTRON mys
2R	16812513	2R_16812513_SNP [dm3] 2R_20925008_SNP [dm6]	G	A	3.022e^-4	0.821	INTRON Rx
3L	17114769	3L_17114769_SNP [dm3] 3L_17121669_SNP [dm6]	A	G	3.024e^-4	0.821	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv
3L	13226276	3L_13226276_SNP [dm3] 3L_13233176_SNP [dm6]	G	A	3.025e^-4	0.821	INTRON caps
2L	3409808	2L_3409808_SNP [dm3] 2L_3409808_SNP [dm6]	A	T	3.027e^-4	0.821	UPSTREAM CG8840 INTRON pgant2
3R	9577542	3R_9577542_DEL [dm3] 3R_13751820_DEL [dm6]	ATA	A	3.036e^-4	0.821	INTRON CG34383
3L	1394253	3L_1394253_SNP [dm3] 3L_1394253_SNP [dm6]	A	G	3.041e^-4	0.821	INTRON Ptp61F
X	19620238	X_19620238_INS [dm3] X_19726205_INS [dm6]	A	AA	3.049e^-4	0.821	INTRON CG12531
3R	21626374	3R_21626374_SNP [dm3] 3R_25800652_SNP [dm6]	T	A	3.051e^-4	0.821	INTERGENIC
2L	2550977	2L_2550977_SNP [dm3] 2L_2550977_SNP [dm6]	G	A	3.054e^-4	0.821	DOWNSTREAM CG3515 INTERGENIC
3L	4948191	3L_4948191_SNP [dm3] 3L_4948191_SNP [dm6]	A	G	3.054e^-4	0.821	INTRON Con
2R	14825275	2R_14825275_SNP [dm3] 2R_18937770_SNP [dm6]	C	T	3.055e^-4	0.821	INTRON sano
2R	10423968	2R_10423968_SNP [dm3] 2R_14536463_SNP [dm6]	G	C	3.063e^-4	0.821	INTRON ttv
2R	10423986	2R_10423986_SNP [dm3] 2R_14536481_SNP [dm6]	C	T	3.063e^-4	0.821	INTRON ttv
2R	11177453	2R_11177453_SNP [dm3] 2R_15289948_SNP [dm6]	T	C	3.083e^-4	0.822	INTRON Trpm
2R	17765086	2R_17765086_SNP [dm3] 2R_21877581_SNP [dm6]	C	T	3.088e^-4	0.822	INTRON Fili	TF binding site mE1_TFBS_cnc
2L	14290504	2L_14290504_SNP [dm3] 2L_14290504_SNP [dm6]	T	G	3.089e^-4	0.822	UPSTREAM CR43639 INTRON wb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14155983	2L_14155983_SNP [dm3] 2L_14155983_SNP [dm6]	A	G	3.092e^-4	0.822	INTRON CG17341
X	7747153	X_7747153_SNP [dm3] X_7853120_SNP [dm6]	G	A	3.098e^-4	0.822	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16625458	3R_16625458_SNP [dm3] 3R_20799736_SNP [dm6]	C	T	3.104e^-4	0.822	INTRON Syp
3L	14321635	3L_14321635_SNP [dm3] 3L_14328535_SNP [dm6]	C	A	3.111e^-4	0.822	UPSTREAM CG13482 INTRON fz
3L	14321640	3L_14321640_SNP [dm3] 3L_14328540_SNP [dm6]	T	C	3.111e^-4	0.822	UPSTREAM CG13482 INTRON fz
3L	14321647	3L_14321647_SNP [dm3] 3L_14328547_SNP [dm6]	T	G	3.111e^-4	0.822	UPSTREAM CG13482 INTRON fz
3R	22707445	3R_22707445_SNP [dm3] 3R_26881723_SNP [dm6]	C	G	3.116e^-4	0.822	UPSTREAM T48 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	3245042	3R_3245042_SNP [dm3] 3R_7419320_SNP [dm6]	T	G	3.117e^-4	0.822	UPSTREAM CG34023 INTRON CG31544
3R	7674064	3R_7674064_SNP [dm3] 3R_11848342_SNP [dm6]	C	T	3.118e^-4	0.822	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14321689	3L_14321689_SNP [dm3] 3L_14328589_SNP [dm6]	T	C	3.133e^-4	0.823	UPSTREAM CG13482 INTRON fz
2R	17685688	2R_17685688_SNP [dm3] 2R_21798183_SNP [dm6]	C	G	3.133e^-4	0.823	SYNONYMOUS_CODING CG18735	TF binding site mE1_TFBS_chinmo
2L	3471028	2L_3471028_SNP [dm3] 2L_3471028_SNP [dm6]	T	C	3.141e^-4	0.823	SYNONYMOUS_CODING CG31776
3R	18536272	3R_18536272_SNP [dm3] 3R_22710550_SNP [dm6]	C	T	3.145e^-4	0.823	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
3L	9743592	3L_9743592_SNP [dm3] 3L_9750492_SNP [dm6]	G	A	3.146e^-4	0.823	INTRON CG42268
2R	10423981	2R_10423981_SNP [dm3] 2R_14536476_SNP [dm6]	G	T	3.153e^-4	0.823	INTRON ttv
3R	25936970	3R_25936970_INS [dm3] 3R_30111248_INS [dm6]	C	CCGTGACACCAGC...	3.153e^-4	0.823	INTRON sima
3R	23435630	3R_23435630_SNP [dm3] 3R_27609908_SNP [dm6]	G	C	3.159e^-4	0.823	INTRON Tusp
2R	2696564	2R_2696564_SNP [dm3] 2R_6809059_SNP [dm6]	C	T	3.164e^-4	0.823	UTR_3_PRIME SdhB & 1 other DOWNSTREAM ubl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8171937	2R_8171937_SNP [dm3] 2R_12284432_SNP [dm6]	T	C	3.167e^-4	0.823	INTRON CG42700
X	3849677	X_3849677_SNP [dm3] X_3955644_SNP [dm6]	G	A	3.168e^-4	0.823	UTR_3_PRIME lva DOWNSTREAM Vap-33A	TF binding site mE1_TFBS_cad
2L	5647050	2L_5647050_SNP [dm3] 2L_5647050_SNP [dm6]	T	C	3.174e^-4	0.823	INTRON CG31646	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	20750744	3R_20750744_SNP [dm3] 3R_24925022_SNP [dm6]	C	G	3.180e^-4	0.824	UTR_3_PRIME Mink UPSTREAM Trf4-2	TF binding site mE1_TFBS_cad
3R	25193158	3R_25193158_SNP [dm3] 3R_29367436_SNP [dm6]	T	C	3.189e^-4	0.824	INTERGENIC
2R	8177215	2R_8177215_SNP [dm3] 2R_12289710_SNP [dm6]	C	T	3.193e^-4	0.824	INTRON CG42700
2L	17628031	2L_17628031_SNP [dm3] 2L_17628031_SNP [dm6]	A	C	3.194e^-4	0.824	NON_SYNONYMOUS_CODING CG43054
3R	21370751	3R_21370751_DEL [dm3] 3R_25545029_DEL [dm6]	TGT	T	3.204e^-4	0.824	INTRON msi
3L	2470261	3L_2470261_SNP [dm3] 3L_2470261_SNP [dm6]	G	A	3.209e^-4	0.824	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	10424474	2R_10424474_SNP [dm3] 2R_14536969_SNP [dm6]	T	G	3.210e^-4	0.824	INTRON ttv
3R	25795370	3R_25795370_SNP [dm3] 3R_29969648_SNP [dm6]	A	T	3.220e^-4	0.826	UPSTREAM TkR99D INTERGENIC
2L	16995839	2L_16995839_SNP [dm3] 2L_16995839_SNP [dm6]	G	C	3.226e^-4	0.826	INTERGENIC
2R	18151048	2R_18151048_SNP [dm3] 2R_22263543_SNP [dm6]	C	G	3.239e^-4	0.828	INTRON dve
2L	6387067	2L_6387067_SNP [dm3] 2L_6387067_SNP [dm6]	T	A	3.260e^-4	0.831	INTRON CG42368
3R	20942860	3R_20942860_SNP [dm3] 3R_25117138_SNP [dm6]	T	C	3.262e^-4	0.831	DOWNSTREAM CG31510 INTRON CG31108
2R	19380563	2R_19380563_SNP [dm3] 2R_23493040_SNP [dm6]	C	G	3.262e^-4	0.831	INTERGENIC
2L	12516049	2L_12516049_SNP [dm3] 2L_12516049_SNP [dm6]	T	C	3.268e^-4	0.831	INTRON bun	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25902741	3R_25902741_SNP [dm3] 3R_30077019_SNP [dm6]	C	A	3.280e^-4	0.831	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16736967	3R_16736967_SNP [dm3] 3R_20911245_SNP [dm6]	A	G	3.283e^-4	0.831	UTR_3_PRIME CG31191 UPSTREAM CR44106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12925508	3R_12925508_SNP [dm3] 3R_17099786_SNP [dm6]	T	A	3.284e^-4	0.831	UPSTREAM cher INTRON cher
3L	14077758	3L_14077758_SNP [dm3] 3L_14084658_SNP [dm6]	A	T	3.287e^-4	0.831	NON_SYNONYMOUS_CODING CG8100
X	15270746	X_15270746_SNP [dm3] X_15376713_SNP [dm6]	T	C	3.295e^-4	0.831	INTRON acj6
3L	11347671	3L_11347671_SNP [dm3] 3L_11354571_SNP [dm6]	G	A	3.296e^-4	0.831	INTERGENIC
2R	15508132	2R_15508132_SNP [dm3] 2R_19620627_SNP [dm6]	A	T	3.296e^-4	0.831	INTRON sm
3L	14321684	3L_14321684_DEL [dm3] 3L_14328584_DEL [dm6]	CCT	AA	3.307e^-4	0.831	UPSTREAM CG13482 INTRON fz
2L	914246	2L_914246_SNP [dm3] 2L_914246_SNP [dm6]	A	G	3.312e^-4	0.831	NON_SYNONYMOUS_CODING GluRIIC UPSTREAM CR44061	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16272406	3L_16272406_SNP [dm3] 3L_16279306_SNP [dm6]	T	A	3.316e^-4	0.831	UPSTREAM CG13050 INTERGENIC
2R	10447015	2R_10447015_INS [dm3] 2R_14559510_INS [dm6]	T	TAT	3.316e^-4	0.831	INTRON ttv
2L	3321123	2L_3321123_DEL [dm3] 2L_3321123_DEL [dm6]	CAC	C	3.321e^-4	0.831	INTRON CG8837
2R	8182325	2R_8182325_SNP [dm3] 2R_12294820_SNP [dm6]	A	G	3.324e^-4	0.831	INTRON CG42700
2L	3710938	2L_3710938_SNP [dm3] 2L_3710938_SNP [dm6]	G	A	3.340e^-4	0.833	SYNONYMOUS_CODING cutlet DOWNSTREAM CG31955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15166172	3R_15166172_DEL [dm3] 3R_19340450_DEL [dm6]	AGAATAGATATTAAATGTTA...	A	3.342e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	11728411	2R_11728411_SNP [dm3] 2R_15840906_SNP [dm6]	G	C	3.354e^-4	0.834	INTRON tun	regulatory region REDfly_CRMs
2R	6213587	2R_6213587_SNP [dm3] 2R_10326082_SNP [dm6]	A	T	3.360e^-4	0.834	INTRON CG42732
X	12437185	X_12437185_SNP [dm3] X_12543152_SNP [dm6]	G	T	3.364e^-4	0.834	INTRON CG43921
2R	10421404	2R_10421404_SNP [dm3] 2R_14533899_SNP [dm6]	A	C	3.367e^-4	0.834	INTRON ttv
3L	1570769	3L_1570769_SNP [dm3] 3L_1570769_SNP [dm6]	C	T	3.369e^-4	0.834	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19417041	2L_19417041_SNP [dm3] 2L_19417041_SNP [dm6]	T	C	3.379e^-4	0.834	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
3R	7686614	3R_7686614_SNP [dm3] 3R_11860892_SNP [dm6]	C	G	3.386e^-4	0.834	INTRON CG6959
3R	19177173	3R_19177173_SNP [dm3] 3R_23351451_SNP [dm6]	G	T	3.386e^-4	0.834	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14713830	3L_14713830_DEL [dm3] 3L_14720730_DEL [dm6]	TCGAT	A	3.388e^-4	0.834	INTRON ome
2R	14287043	2R_14287043_SNP [dm3] 2R_18399538_SNP [dm6]	G	A	3.388e^-4	0.834	SYNONYMOUS_CODING GstE2 DOWNSTREAM GstE1
2R	8174202	2R_8174202_SNP [dm3] 2R_12286697_SNP [dm6]	A	G	3.408e^-4	0.838	INTRON CG42700
3R	8608972	3R_8608972_SNP [dm3] 3R_12783250_SNP [dm6]	G	T	3.445e^-4	0.84	UPSTREAM beat-Vc INTERGENIC
X	11235189	X_11235189_INS [dm3] X_11341156_INS [dm6]	T	TATTCACATGTATTTCAACT...	3.449e^-4	0.84	INTRON CG34348	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16996221	2R_16996221_SNP [dm3] 2R_21108716_SNP [dm6]	C	T	3.460e^-4	0.84	INTRON ktub
3L	14078104	3L_14078104_SNP [dm3] 3L_14085004_SNP [dm6]	T	A	3.461e^-4	0.84	SYNONYMOUS_CODING CG8100
2R	10736594	2R_10736594_SNP [dm3] 2R_14849089_SNP [dm6]	C	G	3.462e^-4	0.84	SYNONYMOUS_CODING SMC2 UPSTREAM CG10209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23822240	3R_23822240_SNP [dm3] 3R_27996518_SNP [dm6]	T	A	3.465e^-4	0.84	INTERGENIC
3R	25299614	3R_25299614_SNP [dm3] 3R_29473892_SNP [dm6]	C	A	3.472e^-4	0.84	INTRON Ptp99A
3R	23800335	3R_23800335_SNP [dm3] 3R_27974613_SNP [dm6]	G	T	3.475e^-4	0.84	INTRON betaTub97EF
3R	22268931	3R_22268931_SNP [dm3] 3R_26443209_SNP [dm6]	G	A	3.481e^-4	0.84	INTRON tx
3L	13979164	3L_13979164_SNP [dm3] 3L_13986064_SNP [dm6]	G	T	3.485e^-4	0.84	UTR_5_PRIME CG17364 UPSTREAM CG17362	TF binding site mE1_TFBS_cad
2L	7509842	2L_7509842_SNP [dm3] 2L_7509842_SNP [dm6]	T	A	3.491e^-4	0.84	INTRON RapGAP1
3R	13892838	3R_13892838_SNP [dm3] 3R_18067116_SNP [dm6]	G	A	3.500e^-4	0.84	INTERGENIC
3R	23833773	3R_23833773_DEL [dm3] 3R_28008051_DEL [dm6]	ACATAGACACA...	A	3.503e^-4	0.84	INTERGENIC
2R	8170200	2R_8170200_SNP [dm3] 2R_12282695_SNP [dm6]	T	C	3.510e^-4	0.84	INTRON CG42700
3R	13905811	3R_13905811_SNP [dm3] 3R_18080089_SNP [dm6]	T	A	3.511e^-4	0.84	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13905814	3R_13905814_DEL [dm3] 3R_18080092_DEL [dm6]	AC	A	3.511e^-4	0.84	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13905819	3R_13905819_INS [dm3] 3R_18080097_INS [dm6]	A	ATCTT	3.511e^-4	0.84	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	15220338	3R_15220338_SNP [dm3] 3R_19394616_SNP [dm6]	C	G	3.517e^-4	0.84	SPLICE_SITE_REGION CG3739 INTRON Ino80 & 1 other
2L	1653778	2L_1653778_SNP [dm3] 2L_1653778_SNP [dm6]	G	T	3.519e^-4	0.84	UTR_5_PRIME chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	2649640	2R_2649640_SNP [dm3] 2R_6762135_SNP [dm6]	C	T	3.519e^-4	0.84	UTR_3_PRIME Epac	TF binding site mE1_TFBS_cad
2R	2671990	2R_2671990_SNP [dm3] 2R_6784485_SNP [dm6]	T	G	3.520e^-4	0.84	INTRON Epac	TF binding site mE1_TFBS_chinmo
3R	19611446	3R_19611446_SNP [dm3] 3R_23785724_SNP [dm6]	C	T	3.524e^-4	0.84	INTRON mbc
2R	15392321	2R_15392321_SNP [dm3] 2R_19504816_SNP [dm6]	G	A	3.536e^-4	0.84	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl
2L	19823976	2L_19823976_SNP [dm3] 2L_19823976_SNP [dm6]	T	G	3.539e^-4	0.84	INTRON sick
3L	14077709	3L_14077709_SNP [dm3] 3L_14084609_SNP [dm6]	A	C	3.547e^-4	0.84	NON_SYNONYMOUS_CODING CG8100
2L	18532020	2L_18532020_INS [dm3] 2L_18532020_INS [dm6]	T	TG	3.562e^-4	0.84	DOWNSTREAM Pde11 & 1 other INTERGENIC
3L	14321693	3L_14321693_DEL [dm3] 3L_14328593_DEL [dm6]	AGAGA	A	3.564e^-4	0.84	UPSTREAM CG13482 INTRON fz
2R	8168304	2R_8168304_SNP [dm3] 2R_12280799_SNP [dm6]	A	G	3.565e^-4	0.84	INTRON CG42700	TF binding site mE1_TFBS_chinmo
2R	12665551	2R_12665551_SNP [dm3] 2R_16778046_SNP [dm6]	T	C	3.568e^-4	0.84	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21800823	3R_21800823_SNP [dm3] 3R_25975101_SNP [dm6]	C	A	3.568e^-4	0.84	INTRON CG42261
2L	12665656	2L_12665656_SNP [dm3] 2L_12665656_SNP [dm6]	C	T	3.571e^-4	0.84	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10423045	2R_10423045_SNP [dm3] 2R_14535540_SNP [dm6]	C	T	3.579e^-4	0.84	INTRON ttv
3L	4930011	3L_4930011_SNP [dm3] 3L_4930011_SNP [dm6]	T	C	3.582e^-4	0.84	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
2L	12986878	2L_12986878_SNP [dm3] 2L_12986878_SNP [dm6]	T	A	3.586e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2615401	X_2615401_SNP [dm3] X_2721368_SNP [dm6]	G	A	3.587e^-4	0.84	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	1090528	2L_1090528_SNP [dm3] 2L_1090528_SNP [dm6]	A	C	3.592e^-4	0.84	INTRON CG4629
2R	10378811	2R_10378811_SNP [dm3] 2R_14491306_SNP [dm6]	C	A	3.600e^-4	0.84	INTRON L
3R	26588444	3R_26588444_SNP [dm3] 3R_30762722_SNP [dm6]	T	G	3.602e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	1584218	3L_1584218_SNP [dm3] 3L_1584218_SNP [dm6]	T	A	3.603e^-4	0.84	INTRON CG13917	TF binding site mE1_TFBS_HSA
2R	8779983	2R_8779983_SNP [dm3] 2R_12892478_SNP [dm6]	G	A	3.605e^-4	0.84	INTRON vg
3R	7677183	3R_7677183_SNP [dm3] 3R_11851461_SNP [dm6]	G	A	3.606e^-4	0.84	INTRON CG6959	TF binding site mE1_TFBS_Trl
3R	7680456	3R_7680456_SNP [dm3] 3R_11854734_SNP [dm6]	C	G	3.609e^-4	0.84	INTRON CG6959
3R	22620613	3R_22620613_SNP [dm3] 3R_26794891_SNP [dm6]	C	T	3.622e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7698099	3R_7698099_SNP [dm3] 3R_11872377_SNP [dm6]	T	G	3.627e^-4	0.843	INTERGENIC
2R	8185395	2R_8185395_SNP [dm3] 2R_12297890_SNP [dm6]	A	C	3.631e^-4	0.843	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	13918974	3R_13918974_SNP [dm3] 3R_18093252_SNP [dm6]	A	G	3.661e^-4	0.843	INTRON sr
2L	7650534	2L_7650534_SNP [dm3] 2L_7650534_SNP [dm6]	T	C	3.665e^-4	0.843	INTRON Slob
2L	3472928	2L_3472928_SNP [dm3] 2L_3472928_SNP [dm6]	G	C	3.678e^-4	0.843	NON_SYNONYMOUS_CODING pgant4 DOWNSTREAM CG31776	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12066559	3L_12066559_SNP [dm3] 3L_12073459_SNP [dm6]	A	T	3.681e^-4	0.843	INTRON Sema-5c
2R	12547208	2R_12547208_SNP [dm3] 2R_16659703_SNP [dm6]	T	A	3.683e^-4	0.843	UPSTREAM Picot INTRON Picot
X	14613580	X_14613580_SNP [dm3] X_14719547_SNP [dm6]	C	G	3.689e^-4	0.843	UPSTREAM hog INTRON NetB	transposable element FlyBase
3L	5591021	3L_5591021_SNP [dm3] 3L_5597921_SNP [dm6]	A	G	3.692e^-4	0.843	DOWNSTREAM CG5150 & 1 other INTERGENIC
3R	8966273	3R_8966273_SNP [dm3] 3R_13140551_SNP [dm6]	A	T	3.692e^-4	0.843	INTRON timeout & 2 others
3R	17949245	3R_17949245_INS [dm3] 3R_22123523_INS [dm6]	T	TTCT	3.693e^-4	0.843	INTRON CG42390
2R	6380233	2R_6380233_SNP [dm3] 2R_10492728_SNP [dm6]	A	G	3.693e^-4	0.843	INTRON lola
2L	20527110	2L_20527110_SNP [dm3] 2L_20527110_SNP [dm6]	G	A	3.704e^-4	0.843	INTERGENIC
2L	4006724	2L_4006724_SNP [dm3] 2L_4006724_SNP [dm6]	C	A	3.705e^-4	0.843	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
X	2948992	X_2948992_SNP [dm3] X_3054959_SNP [dm6]	A	T	3.707e^-4	0.843	INTRON kirre
2R	10396199	2R_10396199_SNP [dm3] 2R_14508694_SNP [dm6]	G	C	3.708e^-4	0.843	SYNONYMOUS_CODING Asx	TF binding site BDTNP1_TFBS_dl
3R	13948010	3R_13948010_SNP [dm3] 3R_18122288_SNP [dm6]	G	C	3.711e^-4	0.843	UTR_5_PRIME sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10393728	2R_10393728_SNP [dm3] 2R_14506223_SNP [dm6]	A	T	3.713e^-4	0.843	SYNONYMOUS_CODING Asx
2R	19377170	2R_19377170_SNP [dm3] 2R_23489647_SNP [dm6]	A	G	3.713e^-4	0.843	INTRON CG43795
2R	8195329	2R_8195329_SNP [dm3] 2R_12307824_SNP [dm6]	A	G	3.713e^-4	0.843	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_cad
X	5217790	X_5217790_SNP [dm3] X_5323757_SNP [dm6]	T	A	3.719e^-4	0.843	UPSTREAM Mcm3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	6974055	2L_6974055_SNP [dm3] 2L_6974055_SNP [dm6]	G	T	3.723e^-4	0.843	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	9505042	3L_9505042_SNP [dm3] 3L_9511942_SNP [dm6]	C	T	3.731e^-4	0.843	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2R	10423946	2R_10423946_SNP [dm3] 2R_14536441_SNP [dm6]	T	C	3.732e^-4	0.843	INTRON ttv
2L	16203092	2L_16203092_SNP [dm3] 2L_16203092_SNP [dm6]	G	A	3.750e^-4	0.844	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24763762	3R_24763762_SNP [dm3] 3R_28938040_SNP [dm6]	G	T	3.750e^-4	0.844	INTRON CG14521
3L	11410867	3L_11410867_SNP [dm3] 3L_11417767_SNP [dm6]	T	A	3.750e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21807895	3R_21807895_SNP [dm3] 3R_25982173_SNP [dm6]	C	A	3.755e^-4	0.844	UTR_3_PRIME CG42261 UPSTREAM Nf1
2L	19920514	2L_19920514_SNP [dm3] 2L_19920514_SNP [dm6]	A	G	3.759e^-4	0.844	INTRON sick EXON CR43828
X	5074080	X_5074080_SNP [dm3] X_5180047_SNP [dm6]	T	G	3.766e^-4	0.845	DOWNSTREAM CG5062 INTRON rg & 1 other
3L	9504815	3L_9504815_DEL [dm3] 3L_9511715_DEL [dm6]	AC	T	3.801e^-4	0.851	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8677336	3L_8677336_SNP [dm3] 3L_8684236_SNP [dm6]	G	A	3.807e^-4	0.851	INTERGENIC
3R	18833804	3R_18833804_SNP [dm3] 3R_23008082_SNP [dm6]	C	T	3.812e^-4	0.851	NON_SYNONYMOUS_CODING CG34375	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2669195	2R_2669195_SNP [dm3] 2R_6781690_SNP [dm6]	G	C	3.813e^-4	0.851	UPSTREAM Cyp6a2 INTRON Epac
2L	1953771	2L_1953771_SNP [dm3] 2L_1953771_SNP [dm6]	C	A	3.817e^-4	0.851	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	827690	2R_827690_SNP [dm3] 2R_4940185_SNP [dm6]	T	A	3.844e^-4	0.856	INTRON Ir41a	TF binding site mE1_TFBS_sens
3R	18263424	3R_18263424_SNP [dm3] 3R_22437702_SNP [dm6]	A	G	3.850e^-4	0.856	INTERGENIC
3R	19153253	3R_19153253_SNP [dm3] 3R_23327531_SNP [dm6]	T	G	3.854e^-4	0.856	INTRON pnt
2R	16304585	2R_16304585_SNP [dm3] 2R_20417080_SNP [dm6]	G	T	3.857e^-4	0.856	INTERGENIC
X	14650817	X_14650817_SNP [dm3] X_14756784_SNP [dm6]	T	A	3.864e^-4	0.856	DOWNSTREAM CG15890 INTERGENIC
2L	908958	2L_908958_SNP [dm3] 2L_908958_SNP [dm6]	T	G	3.867e^-4	0.856	INTERGENIC
2R	19550802	2R_19550802_SNP [dm3] 2R_23663279_SNP [dm6]	G	A	3.871e^-4	0.856	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8140431	X_8140431_SNP [dm3] X_8246398_SNP [dm6]	C	T	3.885e^-4	0.856	SYNONYMOUS_CODING Trxr-1	TF binding site mE1_TFBS_chinmo
2R	10379784	2R_10379784_SNP [dm3] 2R_14492279_SNP [dm6]	G	A	3.889e^-4	0.856	INTRON L	TF binding site mE1_TFBS_cad
3R	15391834	3R_15391834_SNP [dm3] 3R_19566112_SNP [dm6]	T	A	3.889e^-4	0.856	INTRON Dys
3R	6302781	3R_6302781_SNP [dm3] 3R_10477059_SNP [dm6]	C	T	3.890e^-4	0.856	INTERGENIC
3R	19155971	3R_19155971_DEL [dm3] 3R_23330249_DEL [dm6]	AC	A	3.895e^-4	0.856	INTRON pnt
X	9105422	X_9105422_SNP [dm3] X_9211389_SNP [dm6]	T	C	3.901e^-4	0.856	UPSTREAM CG12119 INTERGENIC
X	11235325	X_11235325_SNP [dm3] X_11341292_SNP [dm6]	A	C	3.909e^-4	0.857	INTRON CG34348	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	13548845	3L_13548845_DEL [dm3] 3L_13555745_DEL [dm6]	ACACA	A	3.931e^-4	0.859	INTRON bru-3
2R	16571550	2R_16571550_SNP [dm3] 2R_20684045_SNP [dm6]	C	T	3.941e^-4	0.859	INTERGENIC
3R	10622706	3R_10622706_SNP [dm3] 3R_14796984_SNP [dm6]	A	C	3.949e^-4	0.859	SYNONYMOUS_CODING CG14855
2R	16597279	2R_16597279_SNP [dm3] 2R_20709774_SNP [dm6]	G	C	3.967e^-4	0.859	INTRON dpr
2L	7679607	2L_7679607_SNP [dm3] 2L_7679607_SNP [dm6]	A	G	3.974e^-4	0.859	INTRON Myo28B1
2R	1006558	2R_1006558_SNP [dm3] 2R_5119053_SNP [dm6]	T	A	3.979e^-4	0.859	INTRON gus
X	22366420	X_22366420_SNP [dm3] X_22964584_SNP [dm6]	C	T	3.984e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8181355	2R_8181355_DEL [dm3] 2R_12293850_DEL [dm6]	AG	A	3.995e^-4	0.859	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12986816	2L_12986816_SNP [dm3] 2L_12986816_SNP [dm6]	C	T	3.997e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14611927	3R_14611927_SNP [dm3] 3R_18786205_SNP [dm6]	G	A	3.998e^-4	0.859	INTRON CG7720
2R	10415629	2R_10415629_SNP [dm3] 2R_14528124_SNP [dm6]	C	T	4.001e^-4	0.859	INTRON ttv
2R	8721270	2R_8721270_SNP [dm3] 2R_12833765_SNP [dm6]	T	G	4.005e^-4	0.859	INTERGENIC
2L	13687670	2L_13687670_SNP [dm3] 2L_13687670_SNP [dm6]	G	T	4.005e^-4	0.859	INTRON CG31814
3R	16569275	3R_16569275_SNP [dm3] 3R_20743553_SNP [dm6]	T	G	4.009e^-4	0.859	DOWNSTREAM CG31200 INTRON CG42322 & 1 other	TF binding site mE1_TFBS_cad
X	21892523	X_21892523_SNP [dm3] X_22490687_SNP [dm6]	G	T	4.012e^-4	0.859	UPSTREAM l_1_G0196 INTRON l_1_G0196 & 1 other
X	19755994	X_19755994_SNP [dm3] X_19861961_SNP [dm6]	C	G	4.018e^-4	0.859	NON_SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14077438	2R_14077438_SNP [dm3] 2R_18189933_SNP [dm6]	C	T	4.023e^-4	0.859	DOWNSTREAM CG14500 INTRON CG33958
3R	7690645	3R_7690645_SNP [dm3] 3R_11864923_SNP [dm6]	T	G	4.029e^-4	0.859	INTRON CG6959
2R	2657528	2R_2657528_SNP [dm3] 2R_6770023_SNP [dm6]	A	T	4.029e^-4	0.859	UPSTREAM Epac INTRON Epac
3R	18965165	3R_18965165_SNP [dm3] 3R_23139443_SNP [dm6]	T	C	4.038e^-4	0.859	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1239300	2L_1239300_DEL [dm3] 2L_1239300_DEL [dm6]	TGCT	T	4.046e^-4	0.859	UPSTREAM CG5397 INTERGENIC
2L	12294504	2L_12294504_SNP [dm3] 2L_12294504_SNP [dm6]	A	T	4.047e^-4	0.859	INTRON aret
3L	1394254	3L_1394254_SNP [dm3] 3L_1394254_SNP [dm6]	C	A	4.053e^-4	0.859	INTRON Ptp61F
X	16899182	X_16899182_SNP [dm3] X_17005149_SNP [dm6]	C	A	4.055e^-4	0.859	INTRON CG45002
2R	14981687	2R_14981687_SNP [dm3] 2R_19094182_SNP [dm6]	A	G	4.056e^-4	0.859	DOWNSTREAM Ir56a INTRON 5-HT1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17015518	2L_17015518_SNP [dm3] 2L_17015518_SNP [dm6]	C	A	4.058e^-4	0.859	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2R	8155744	2R_8155744_SNP [dm3] 2R_12268239_SNP [dm6]	G	A	4.064e^-4	0.859	INTRON Cam
2R	15791532	2R_15791532_SNP [dm3] 2R_19904027_SNP [dm6]	G	A	4.076e^-4	0.859	INTERGENIC
2L	15029338	2L_15029338_SNP [dm3] 2L_15029338_SNP [dm6]	T	C	4.089e^-4	0.859	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2R	10629515	2R_10629515_SNP [dm3] 2R_14742010_SNP [dm6]	G	A	4.093e^-4	0.859	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad
3R	24815066	3R_24815066_SNP [dm3] 3R_28989344_SNP [dm6]	A	T	4.094e^-4	0.859	INTERGENIC
3L	4652013	3L_4652013_DEL [dm3] 3L_4652013_DEL [dm6]	CA	C	4.102e^-4	0.859	INTRON axo
3L	6355535	3L_6355535_SNP [dm3] 3L_6362435_SNP [dm6]	G	T	4.108e^-4	0.859	INTERGENIC
X	14022761	X_14022761_SNP [dm3] X_14128728_SNP [dm6]	C	A	4.111e^-4	0.859	INTERGENIC
X	18238224	X_18238224_INS [dm3] X_18344191_INS [dm6]	A	AGA	4.124e^-4	0.859	INTRON CG6123
2L	10341499	2L_10341499_SNP [dm3] 2L_10341499_SNP [dm6]	C	T	4.129e^-4	0.859	UTR_3_PRIME SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	10106879	2L_10106879_DEL [dm3] 2L_10106879_DEL [dm6]	AC	A	4.130e^-4	0.859	INTRON CG44153 & 1 other
2L	17629072	2L_17629072_SNP [dm3] 2L_17629072_SNP [dm6]	C	A	4.130e^-4	0.859	DOWNSTREAM CG43054 INTERGENIC
3R	20942903	3R_20942903_SNP [dm3] 3R_25117181_SNP [dm6]	A	T	4.130e^-4	0.859	DOWNSTREAM CG31510 INTRON CG31108
3L	4050337	3L_4050337_SNP [dm3] 3L_4050337_SNP [dm6]	T	C	4.131e^-4	0.859	INTRON CG1136	TF binding site mE1_TFBS_inv
3R	13094426	3R_13094426_SNP [dm3] 3R_17268704_SNP [dm6]	C	A	4.132e^-4	0.859	INTERGENIC
3R	17901666	3R_17901666_SNP [dm3] 3R_22075944_SNP [dm6]	A	C	4.135e^-4	0.859	INTRON how
2L	19528328	2L_19528328_SNP [dm3] 2L_19528328_SNP [dm6]	A	G	4.137e^-4	0.859	UTR_5_PRIME CG10165 UPSTREAM CG10165 INTRON CG10137
2R	8530548	2R_8530548_SNP [dm3] 2R_12643043_SNP [dm6]	C	A	4.138e^-4	0.859	INTRON CG8785
2R	15706611	2R_15706611_SNP [dm3] 2R_19819106_SNP [dm6]	G	A	4.140e^-4	0.859	INTERGENIC
2L	11077245	2L_11077245_SNP [dm3] 2L_11077245_SNP [dm6]	G	A	4.144e^-4	0.859	SPLICE_SITE_REGION AstC INTRON AstC	TF binding site BDTNP1_TFBS_hb
X	16569585	X_16569585_SNP [dm3] X_16675552_SNP [dm6]	T	C	4.145e^-4	0.859	INTRON CG13012
2R	7800509	2R_7800509_SNP [dm3] 2R_11913004_SNP [dm6]	A	G	4.151e^-4	0.859	UPSTREAM CG13183 INTERGENIC
X	9083658	X_9083658_SNP [dm3] X_9189625_SNP [dm6]	T	C	4.158e^-4	0.859	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
3R	25204892	3R_25204892_SNP [dm3] 3R_29379170_SNP [dm6]	G	A	4.161e^-4	0.859	INTRON Ptp99A
3R	22078642	3R_22078642_SNP [dm3] 3R_26252920_SNP [dm6]	T	A	4.167e^-4	0.859	EXON CR42745
2L	19676543	2L_19676543_SNP [dm3] 2L_19676543_SNP [dm6]	C	T	4.167e^-4	0.859	INTRON Lar
3L	5591016	3L_5591016_SNP [dm3] 3L_5597916_SNP [dm6]	A	T	4.176e^-4	0.859	DOWNSTREAM CG5150 & 1 other INTERGENIC
3L	5591017	3L_5591017_SNP [dm3] 3L_5597917_SNP [dm6]	T	G	4.176e^-4	0.859	DOWNSTREAM CG5150 & 1 other INTERGENIC
3L	9746573	3L_9746573_SNP [dm3] 3L_9753473_SNP [dm6]	C	T	4.180e^-4	0.859	INTRON CG42268
3L	2386725	3L_2386725_SNP [dm3] 3L_2386725_SNP [dm6]	C	T	4.183e^-4	0.859	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9102309	3L_9102309_SNP [dm3] 3L_9109209_SNP [dm6]	A	C	4.184e^-4	0.859	INTRON bol
3R	20749953	3R_20749953_SNP [dm3] 3R_24924231_SNP [dm6]	C	A	4.191e^-4	0.859	SPLICE_SITE_REGION Mink UPSTREAM Trf4-2 INTRON Mink	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14321706	3L_14321706_SNP [dm3] 3L_14328606_SNP [dm6]	T	C	4.194e^-4	0.859	UPSTREAM CG13482 INTRON fz
2R	10736435	2R_10736435_SNP [dm3] 2R_14848930_SNP [dm6]	G	A	4.204e^-4	0.859	SYNONYMOUS_CODING SMC2 UPSTREAM CG10209	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16397123	2L_16397123_SNP [dm3] 2L_16397123_SNP [dm6]	A	G	4.205e^-4	0.859	INTERGENIC
2L	2920814	2L_2920814_SNP [dm3] 2L_2920814_SNP [dm6]	A	G	4.208e^-4	0.859	INTRON lilli
X	6837661	X_6837661_SNP [dm3] X_6943628_SNP [dm6]	G	A	4.211e^-4	0.859	INTRON CG14431
3R	13342592	3R_13342592_SNP [dm3] 3R_17516870_SNP [dm6]	T	C	4.215e^-4	0.859	INTERGENIC
2R	8171764	2R_8171764_SNP [dm3] 2R_12284259_SNP [dm6]	T	C	4.217e^-4	0.859	INTRON CG42700
2L	12379846	2L_12379846_SNP [dm3] 2L_12379846_SNP [dm6]	G	T	4.218e^-4	0.859	INTRON bru-2
3L	4938688	3L_4938688_SNP [dm3] 3L_4938688_SNP [dm6]	T	A	4.234e^-4	0.861	UTR_3_PRIME Con
2R	19674636	2R_19674636_SNP [dm3] 2R_23787113_SNP [dm6]	A	C	4.238e^-4	0.861	INTRON CG9850
2L	16992919	2L_16992919_SNP [dm3] 2L_16992919_SNP [dm6]	T	G	4.253e^-4	0.861	NON_SYNONYMOUS_CODING beat-IIIb UTR_3_PRIME beat-IIIb
X	16226823	X_16226823_SNP [dm3] X_16332790_SNP [dm6]	A	C	4.258e^-4	0.861	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	914299	2L_914299_SNP [dm3] 2L_914299_SNP [dm6]	G	A	4.259e^-4	0.861	UPSTREAM CR44061 INTRON GluRIIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5128002	X_5128002_SNP [dm3] X_5233969_SNP [dm6]	C	A	4.261e^-4	0.861	INTRON CG15465 & 1 other
3R	18965168	3R_18965168_SNP [dm3] 3R_23139446_SNP [dm6]	A	C	4.266e^-4	0.861	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	12139938	X_12139938_DEL [dm3] X_12245905_DEL [dm6]	AG	C	4.267e^-4	0.861	INTRON Ten-a
2L	18915068	2L_18915068_SNP [dm3] 2L_18915068_SNP [dm6]	T	C	4.270e^-4	0.861	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19653582	3R_19653582_SNP [dm3] 3R_23827860_SNP [dm6]	A	G	4.283e^-4	0.863	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23833627	3R_23833627_SNP [dm3] 3R_28007905_SNP [dm6]	C	T	4.289e^-4	0.863	INTERGENIC
2R	12475383	2R_12475383_SNP [dm3] 2R_16587878_SNP [dm6]	G	A	4.292e^-4	0.863	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2819729	2L_2819729_SNP [dm3] 2L_2819729_SNP [dm6]	T	C	4.328e^-4	0.866	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad
2L	4753705	2L_4753705_MNP [dm3] 2L_4753705_MNP [dm6]	TAT	CTA	4.332e^-4	0.866	INTRON CG15630
3L	8452596	3L_8452596_SNP [dm3] 3L_8459496_SNP [dm6]	A	T	4.342e^-4	0.866	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12288511	3L_12288511_SNP [dm3] 3L_12295411_SNP [dm6]	A	T	4.345e^-4	0.866	INTRON CG4328
3R	26820449	3R_26820449_SNP [dm3] 3R_30994727_SNP [dm6]	T	A	4.350e^-4	0.866	INTRON 5-HT7	TF binding site mE1_TFBS_HSA
3R	24878265	3R_24878265_SNP [dm3] 3R_29052543_SNP [dm6]	C	T	4.351e^-4	0.866	UPSTREAM CG11842 DOWNSTREAM CG11841 INTERGENIC
3L	10144778	3L_10144778_SNP [dm3] 3L_10151678_SNP [dm6]	A	G	4.353e^-4	0.866	UPSTREAM CG8072 INTRON dpr10 EXON snoRNA:MeU2-A31
2R	6976287	2R_6976287_INS [dm3] 2R_11088782_INS [dm6]	A	ATACACA	4.354e^-4	0.866	DOWNSTREAM CG43188 INTRON luna
2L	2383391	2L_2383391_SNP [dm3] 2L_2383391_SNP [dm6]	T	C	4.367e^-4	0.866	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt
2L	15427701	2L_15427701_SNP [dm3] 2L_15427701_SNP [dm6]	T	C	4.367e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8166375	2R_8166375_SNP [dm3] 2R_12278870_SNP [dm6]	T	C	4.368e^-4	0.866	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	23837676	3R_23837676_SNP [dm3] 3R_28011954_SNP [dm6]	C	T	4.375e^-4	0.866	INTERGENIC
3R	13971766	3R_13971766_SNP [dm3] 3R_18146044_SNP [dm6]	A	T	4.381e^-4	0.866	INTERGENIC
3L	3270385	3L_3270385_SNP [dm3] 3L_3270385_SNP [dm6]	C	T	4.385e^-4	0.866	UPSTREAM CG14960 INTERGENIC
2R	11352520	2R_11352520_SNP [dm3] 2R_15465015_SNP [dm6]	G	A	4.388e^-4	0.866	INTRON CG43729
3R	22315759	3R_22315759_INS [dm3] 3R_26490037_INS [dm6]	T	TC	4.399e^-4	0.866	INTRON plum
2R	8721177	2R_8721177_SNP [dm3] 2R_12833672_SNP [dm6]	A	C	4.406e^-4	0.866	INTERGENIC
3L	16325690	3L_16325690_SNP [dm3] 3L_16332590_SNP [dm6]	C	T	4.417e^-4	0.866	SYNONYMOUS_CODING retinin UPSTREAM CG13056 DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad
2L	1090525	2L_1090525_SNP [dm3] 2L_1090525_SNP [dm6]	A	G	4.425e^-4	0.866	INTRON CG4629
3R	25922016	3R_25922016_SNP [dm3] 3R_30096294_SNP [dm6]	G	A	4.425e^-4	0.866	INTRON sima
2L	19527945	2L_19527945_SNP [dm3] 2L_19527945_SNP [dm6]	G	A	4.426e^-4	0.866	SYNONYMOUS_CODING CG10165 INTRON CG10137
3R	7686584	3R_7686584_SNP [dm3] 3R_11860862_SNP [dm6]	T	G	4.433e^-4	0.866	INTRON CG6959
3R	25689080	3R_25689080_INS [dm3] 3R_29863358_INS [dm6]	T	TTT	4.448e^-4	0.866	DOWNSTREAM Zip99C & 2 others INTRON RpS8
3R	19853925	3R_19853925_SNP [dm3] 3R_24028203_SNP [dm6]	A	G	4.449e^-4	0.866	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4809541	3L_4809541_SNP [dm3] 3L_4809541_SNP [dm6]	T	G	4.458e^-4	0.866	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12494504	2L_12494504_SNP [dm3] 2L_12494504_SNP [dm6]	T	C	4.469e^-4	0.866	INTRON bun
X	3854540	X_3854540_SNP [dm3] X_3960507_SNP [dm6]	T	C	4.471e^-4	0.866	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo
3R	10509848	3R_10509848_SNP [dm3] 3R_14684126_SNP [dm6]	A	C	4.476e^-4	0.866	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	18534116	2L_18534116_SNP [dm3] 2L_18534116_SNP [dm6]	A	G	4.479e^-4	0.866	NON_SYNONYMOUS_CODING Pde11 UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25795734	3R_25795734_SNP [dm3] 3R_29970012_SNP [dm6]	C	A	4.484e^-4	0.866	UPSTREAM TkR99D INTERGENIC
2R	10421380	2R_10421380_SNP [dm3] 2R_14533875_SNP [dm6]	G	A	4.487e^-4	0.866	INTRON ttv
3R	22422408	3R_22422408_SNP [dm3] 3R_26596686_SNP [dm6]	T	C	4.488e^-4	0.866	DOWNSTREAM scrib INTRON scrib
3L	16283715	3L_16283715_SNP [dm3] 3L_16290615_SNP [dm6]	G	T	4.490e^-4	0.866	SYNONYMOUS_CODING CG13045
3L	4809565	3L_4809565_SNP [dm3] 3L_4809565_SNP [dm6]	C	A	4.490e^-4	0.866	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1604145	2L_1604145_SNP [dm3] 2L_1604145_SNP [dm6]	C	T	4.500e^-4	0.866	INTRON CG31935 & 1 other
3L	9808079	3L_9808079_SNP [dm3] 3L_9814979_SNP [dm6]	G	C	4.502e^-4	0.866	INTRON CG43897
X	2694201	X_2694201_SNP [dm3] X_2800168_SNP [dm6]	T	C	4.505e^-4	0.866	INTRON kirre
2R	2793575	2R_2793575_SNP [dm3] 2R_6906070_SNP [dm6]	A	G	4.532e^-4	0.866	UTR_5_PRIME CG30158	TF binding site mE1_TFBS_chinmo
3L	9742926	3L_9742926_SNP [dm3] 3L_9749826_SNP [dm6]	T	C	4.536e^-4	0.866	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	23434199	3R_23434199_SNP [dm3] 3R_27608477_SNP [dm6]	G	A	4.538e^-4	0.866	UTR_5_PRIME Tusp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12164435	2L_12164435_SNP [dm3] 2L_12164435_SNP [dm6]	T	A	4.538e^-4	0.866	SYNONYMOUS_CODING ZnT33D INTRON CG31760
3R	7686856	3R_7686856_SNP [dm3] 3R_11861134_SNP [dm6]	G	C	4.543e^-4	0.866	INTRON CG6959
3L	15694489	3L_15694489_SNP [dm3] 3L_15701389_SNP [dm6]	G	C	4.544e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8300946	2R_8300946_SNP [dm3] 2R_12413441_SNP [dm6]	T	A	4.547e^-4	0.866	UPSTREAM Cpr49Ah INTERGENIC
3L	5872635	3L_5872635_INS [dm3] 3L_5879535_INS [dm6]	T	TAGACGTAATTTGCTAAACA...	4.553e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1953784	2L_1953784_SNP [dm3] 2L_1953784_SNP [dm6]	A	G	4.557e^-4	0.866	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7673357	3R_7673357_SNP [dm3] 3R_11847635_SNP [dm6]	A	G	4.557e^-4	0.866	INTRON CG6959	TF binding site mE1_TFBS_cad
2R	8775292	2R_8775292_SNP [dm3] 2R_12887787_SNP [dm6]	T	A	4.570e^-4	0.866	INTRON vg
3R	13976372	3R_13976372_SNP [dm3] 3R_18150650_SNP [dm6]	C	T	4.574e^-4	0.866	INTERGENIC
3L	16267559	3L_16267559_SNP [dm3] 3L_16274459_SNP [dm6]	T	C	4.579e^-4	0.866	DOWNSTREAM CG13066 INTERGENIC
2R	14949608	2R_14949608_SNP [dm3] 2R_19062103_SNP [dm6]	C	T	4.579e^-4	0.866	INTERGENIC
2L	7505846	2L_7505846_SNP [dm3] 2L_7505846_SNP [dm6]	T	G	4.580e^-4	0.866	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	19157811	X_19157811_SNP [dm3] X_19263778_SNP [dm6]	T	C	4.583e^-4	0.866	INTRON Vav	TF binding site BDTNP1_TFBS_dl
2L	1934544	2L_1934544_SNP [dm3] 2L_1934544_SNP [dm6]	T	C	4.584e^-4	0.866	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14271916	X_14271916_SNP [dm3] X_14377883_SNP [dm6]	G	T	4.587e^-4	0.866	UPSTREAM betaNACtes3 INTRON dpr8
2R	13533641	2R_13533641_SNP [dm3] 2R_17646136_SNP [dm6]	C	T	4.588e^-4	0.866	DOWNSTREAM CCHa1-R INTERGENIC
3R	18263501	3R_18263501_SNP [dm3] 3R_22437779_SNP [dm6]	G	A	4.589e^-4	0.866	INTERGENIC
3R	13808416	3R_13808416_SNP [dm3] 3R_17982694_SNP [dm6]	A	G	4.591e^-4	0.866	INTRON cpo
2R	10404603	2R_10404603_SNP [dm3] 2R_14517098_SNP [dm6]	C	G	4.598e^-4	0.866	INTERGENIC
2L	17637558	2L_17637558_SNP [dm3] 2L_17637558_SNP [dm6]	G	A	4.602e^-4	0.866	INTERGENIC
3L	9944059	3L_9944059_SNP [dm3] 3L_9950959_SNP [dm6]	C	T	4.612e^-4	0.866	INTRON CG34356
2R	19789106	2R_19789106_SNP [dm3] 2R_23901583_SNP [dm6]	A	T	4.622e^-4	0.866	NON_SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_sens
3L	1438507	3L_1438507_SNP [dm3] 3L_1438507_SNP [dm6]	C	T	4.625e^-4	0.866	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	12625943	2R_12625943_SNP [dm3] 2R_16738438_SNP [dm6]	T	A	4.632e^-4	0.866	UPSTREAM CG43104 DOWNSTREAM CR44464 INTERGENIC
3R	3321515	3R_3321515_SNP [dm3] 3R_7495793_SNP [dm6]	C	G	4.634e^-4	0.866	INTRON alpha-Est9
3L	14713846	3L_14713846_SNP [dm3] 3L_14720746_SNP [dm6]	C	T	4.641e^-4	0.866	INTRON ome
2R	19674764	2R_19674764_SNP [dm3] 2R_23787241_SNP [dm6]	C	A	4.642e^-4	0.866	INTRON CG9850

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.113e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1666 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	17517910	2L_17517910_SNP [dm3] 2L_17517910_SNP [dm6]	A	T	8.891e^-7	1	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2L	17517912	2L_17517912_DEL [dm3] 2L_17517912_DEL [dm6]	AAATTAACATATATTTATGA...	A	2.497e^-6	1	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2R	11248676	2R_11248676_SNP [dm3] 2R_15361171_SNP [dm6]	C	T	3.152e^-6	1	INTRON unc-5
2R	16616582	2R_16616582_SNP [dm3] 2R_20729077_SNP [dm6]	T	A	3.891e^-6	1	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16616584	2R_16616584_SNP [dm3] 2R_20729079_SNP [dm6]	T	G	3.985e^-6	1	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13114187	2R_13114187_SNP [dm3] 2R_17226682_SNP [dm6]	T	C	6.509e^-6	1	INTRON mbl
2L	17517901	2L_17517901_DEL [dm3] 2L_17517901_DEL [dm6]	AA	A	7.512e^-6	1	INTRON Dhc36C	TF binding site mE1_TFBS_cad
3L	15179013	3L_15179013_SNP [dm3] 3L_15185913_SNP [dm6]	G	T	8.189e^-6	1	INTERGENIC
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	9.930e^-6	1	INTERGENIC	TF binding site mE1_TFBS_Kr
X	14407086	X_14407086_SNP [dm3] X_14513053_SNP [dm6]	A	T	1.136e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13114220	2R_13114220_SNP [dm3] 2R_17226715_SNP [dm6]	C	T	1.144e^-5	1	INTRON mbl
3L	6601053	3L_6601053_SNP [dm3] 3L_6607953_SNP [dm6]	A	G	1.295e^-5	1	SYNONYMOUS_CODING CG8368 DOWNSTREAM CR45418	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15162552	3L_15162552_SNP [dm3] 3L_15169452_SNP [dm6]	C	T	1.303e^-5	1	INTERGENIC
2L	2863155	2L_2863155_SNP [dm3] 2L_2863155_SNP [dm6]	T	A	1.372e^-5	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13114218	2R_13114218_SNP [dm3] 2R_17226713_SNP [dm6]	T	A	1.387e^-5	1	INTRON mbl
3R	4220244	3R_4220244_DEL [dm3] 3R_8394522_DEL [dm6]	TT	T	1.432e^-5	1	INTRON CG45263
2R	15917014	2R_15917014_SNP [dm3] 2R_20029509_SNP [dm6]	T	A	1.707e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	10500604	X_10500604_SNP [dm3] X_10606571_SNP [dm6]	C	T	1.878e^-5	1	SYNONYMOUS_CODING CG43347
2L	6743632	2L_6743632_SNP [dm3] 2L_6743632_SNP [dm6]	A	T	1.879e^-5	1	INTRON CG11221
2R	13114153	2R_13114153_SNP [dm3] 2R_17226648_SNP [dm6]	G	T	1.941e^-5	1	INTRON mbl
2R	20697826	2R_20697826_SNP [dm3] 2R_24810303_SNP [dm6]	C	A	2.214e^-5	1	DOWNSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	15319267	3L_15319267_SNP [dm3] 3L_15326167_SNP [dm6]	G	C	2.458e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5363853	3L_5363853_SNP [dm3] 3L_5370753_SNP [dm6]	C	T	2.470e^-5	1	DOWNSTREAM CR44515 & 1 other INTERGENIC
3L	1430221	3L_1430221_SNP [dm3] 3L_1430221_SNP [dm6]	C	G	2.544e^-5	1	INTRON Ptp61F
2L	17702825	2L_17702825_SNP [dm3] 2L_17702825_SNP [dm6]	G	A	2.616e^-5	1	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6636236	2L_6636236_SNP [dm3] 2L_6636236_SNP [dm6]	C	A	2.636e^-5	1	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6540246	X_6540246_SNP [dm3] X_6646213_SNP [dm6]	A	G	2.650e^-5	1	INTRON pigs	TF binding site mE1_TFBS_chinmo
2R	13856966	2R_13856966_SNP [dm3] 2R_17969461_SNP [dm6]	G	A	2.797e^-5	1	INTERGENIC
3L	8523073	3L_8523073_SNP [dm3] 3L_8529973_SNP [dm6]	A	C	2.827e^-5	1	INTRON foi
2L	8491660	2L_8491660_SNP [dm3] 2L_8491660_SNP [dm6]	C	T	3.044e^-5	1	DOWNSTREAM Dh31 & 1 other INTERGENIC
2L	17520839	2L_17520839_SNP [dm3] 2L_17520839_SNP [dm6]	A	T	3.264e^-5	1	DOWNSTREAM CG15143 INTRON Dhc36C
2L	17606502	2L_17606502_SNP [dm3] 2L_17606502_SNP [dm6]	T	A	3.273e^-5	1	EXON CR44412
3R	19549975	3R_19549975_SNP [dm3] 3R_23724253_SNP [dm6]	T	A	3.362e^-5	1	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6636242	2L_6636242_SNP [dm3] 2L_6636242_SNP [dm6]	T	C	3.366e^-5	1	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2220335	3L_2220335_SNP [dm3] 3L_2220335_SNP [dm6]	T	C	3.452e^-5	1	INTERGENIC
2R	18455333	2R_18455333_SNP [dm3] 2R_22567828_SNP [dm6]	G	A	3.527e^-5	1	INTRON dnr1
3L	13024184	3L_13024184_SNP [dm3] 3L_13031084_SNP [dm6]	A	G	3.579e^-5	1	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	15162531	3L_15162531_SNP [dm3] 3L_15169431_SNP [dm6]	T	A	3.654e^-5	1	INTERGENIC
3R	7702763	3R_7702763_SNP [dm3] 3R_11877041_SNP [dm6]	C	A	3.791e^-5	1	UPSTREAM sad INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10307587	2R_10307587_SNP [dm3] 2R_14420082_SNP [dm6]	A	G	4.025e^-5	1	UPSTREAM CG17386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9573111	2R_9573111_SNP [dm3] 2R_13685606_SNP [dm6]	G	A	4.065e^-5	1	INTRON fas
3L	15415329	3L_15415329_SNP [dm3] 3L_15422229_SNP [dm6]	C	T	4.089e^-5	1	INTERGENIC
2L	17544658	2L_17544658_SNP [dm3] 2L_17544658_SNP [dm6]	A	G	4.213e^-5	1	INTERGENIC
3L	15162491	3L_15162491_SNP [dm3] 3L_15169391_SNP [dm6]	A	G	4.282e^-5	1	INTERGENIC
X	10500601	X_10500601_SNP [dm3] X_10606568_SNP [dm6]	G	A	4.294e^-5	1	SYNONYMOUS_CODING CG43347
3L	7196267	3L_7196267_SNP [dm3] 3L_7203167_SNP [dm6]	A	T	4.384e^-5	1	INTERGENIC
3R	23545179	3R_23545179_SNP [dm3] 3R_27719457_SNP [dm6]	C	G	4.472e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16383804	2L_16383804_SNP [dm3] 2L_16383804_SNP [dm6]	T	C	4.537e^-5	1	INTERGENIC
3L	14469406	3L_14469406_SNP [dm3] 3L_14476306_SNP [dm6]	A	T	4.642e^-5	1	INTRON bbg
3L	15917203	3L_15917203_SNP [dm3] 3L_15924103_SNP [dm6]	C	A	4.688e^-5	1	INTRON sff	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26165505	3R_26165505_SNP [dm3] 3R_30339783_SNP [dm6]	C	T	4.860e^-5	1	INTRON hdc
2L	17517853	2L_17517853_SNP [dm3] 2L_17517853_SNP [dm6]	A	C	4.963e^-5	1	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2R	14442117	2R_14442117_SNP [dm3] 2R_18554612_SNP [dm6]	A	G	5.020e^-5	1	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	496314	3R_496314_SNP [dm3] 3R_4670592_SNP [dm6]	T	G	5.025e^-5	1	INTRON CG43427
3R	14652937	3R_14652937_SNP [dm3] 3R_18827215_SNP [dm6]	G	A	5.107e^-5	1	INTRON CG18208
2L	18008229	2L_18008229_SNP [dm3] 2L_18008229_SNP [dm6]	A	C	5.203e^-5	1	NON_SYNONYMOUS_CODING CG42634 UTR_5_PRIME CG42635 UPSTREAM CG42635 & 1 other DOWNSTREAM CG42659
2R	13114157	2R_13114157_SNP [dm3] 2R_17226652_SNP [dm6]	G	A	5.417e^-5	1	INTRON mbl
2R	12127442	2R_12127442_SNP [dm3] 2R_16239937_SNP [dm6]	G	C	5.727e^-5	1	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11038264	3L_11038264_SNP [dm3] 3L_11045164_SNP [dm6]	G	A	5.802e^-5	1	INTRON CG43693	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	19510212	2R_19510212_SNP [dm3] 2R_23622689_SNP [dm6]	T	C	5.831e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16771766	2R_16771766_SNP [dm3] 2R_20884261_SNP [dm6]	G	T	5.860e^-5	1	UTR_3_PRIME otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	11870882	3L_11870882_SNP [dm3] 3L_11877782_SNP [dm6]	C	A	5.863e^-5	1	INTRON CG44837
2R	13856922	2R_13856922_SNP [dm3] 2R_17969417_SNP [dm6]	T	G	5.914e^-5	1	INTERGENIC
2R	15065619	2R_15065619_SNP [dm3] 2R_19178114_SNP [dm6]	T	A	5.930e^-5	1	UTR_3_PRIME CG10737 UPSTREAM hppy DOWNSTREAM CG10737	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
X	15958329	X_15958329_SNP [dm3] X_16064296_SNP [dm6]	C	A	5.957e^-5	1	INTRON dpr18	TF binding site BDTNP1_TFBS_z
2R	13147238	2R_13147238_INS [dm3] 2R_17259733_INS [dm6]	A	AA	6.036e^-5	1	INTRON mbl	TF binding site mE1_TFBS_inv
3R	19549958	3R_19549958_SNP [dm3] 3R_23724236_SNP [dm6]	T	C	6.072e^-5	1	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9543788	3L_9543788_SNP [dm3] 3L_9550688_SNP [dm6]	A	T	6.181e^-5	1	INTRON CG42673
3R	3790462	3R_3790462_SNP [dm3] 3R_7964740_SNP [dm6]	T	C	6.259e^-5	1	INTRON dsx
3R	6193774	3R_6193774_SNP [dm3] 3R_10368052_SNP [dm6]	G	T	6.267e^-5	1	UPSTREAM Rfx INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15151952	3L_15151952_DEL [dm3] 3L_15158852_DEL [dm6]	TT	T	6.599e^-5	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	15711580	3R_15711580_SNP [dm3] 3R_19885858_SNP [dm6]	C	T	6.623e^-5	1	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
3R	19549996	3R_19549996_SNP [dm3] 3R_23724274_SNP [dm6]	A	G	6.630e^-5	1	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15667402	3R_15667402_SNP [dm3] 3R_19841680_SNP [dm6]	T	C	6.654e^-5	1	INTRON CG31459
3L	11850150	3L_11850150_SNP [dm3] 3L_11857050_SNP [dm6]	A	G	6.735e^-5	1	INTRON CG44837
3L	11055212	3L_11055212_SNP [dm3] 3L_11062112_SNP [dm6]	G	A	7.073e^-5	1	SYNONYMOUS_CODING Blos2 UPSTREAM CG6321 DOWNSTREAM CG32069 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	15162633	3L_15162633_INS [dm3] 3L_15169533_INS [dm6]	C	CAAATTAC	7.157e^-5	1	INTERGENIC
3L	5329629	3L_5329629_SNP [dm3] 3L_5336529_SNP [dm6]	C	G	7.179e^-5	1	INTERGENIC
X	18822497	X_18822497_SNP [dm3] X_18928464_SNP [dm6]	A	T	7.187e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12330189	2L_12330189_SNP [dm3] 2L_12330189_SNP [dm6]	A	T	7.380e^-5	1	INTERGENIC
2L	17501270	2L_17501270_SNP [dm3] 2L_17501270_SNP [dm6]	G	T	7.554e^-5	1	UPSTREAM Dhc36C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11108599	3R_11108599_SNP [dm3] 3R_15282877_SNP [dm6]	C	T	7.599e^-5	1	INTRON Tm1
2L	17563622	2L_17563622_SNP [dm3] 2L_17563622_SNP [dm6]	G	T	7.719e^-5	1	INTERGENIC
2L	5361244	2L_5361244_SNP [dm3] 2L_5361244_SNP [dm6]	C	T	7.721e^-5	1	INTRON nompC	TF binding site BDTNP1_TFBS_dl
2L	6696809	2L_6696809_SNP [dm3] 2L_6696809_SNP [dm6]	C	A	7.745e^-5	1	INTRON Tsp
3R	6199987	3R_6199987_SNP [dm3] 3R_10374265_SNP [dm6]	T	G	7.801e^-5	1	INTRON Rfx
X	15072792	X_15072792_SNP [dm3] X_15178759_SNP [dm6]	C	A	8.028e^-5	1	NON_SYNONYMOUS_CODING CG43737	TF binding site mE1_TFBS_chinmo
3L	15178906	3L_15178906_SNP [dm3] 3L_15185806_SNP [dm6]	C	G	8.159e^-5	1	INTERGENIC
2R	20681405	2R_20681405_SNP [dm3] 2R_24793882_SNP [dm6]	C	T	8.180e^-5	1	UPSTREAM Reg-5 DOWNSTREAM ETH EXON CR43257	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13134402	2L_13134402_SNP [dm3] 2L_13134402_SNP [dm6]	A	C	8.184e^-5	1	SYNONYMOUS_CODING CG5122
3L	5329631	3L_5329631_SNP [dm3] 3L_5336531_SNP [dm6]	T	A	8.301e^-5	1	INTERGENIC
2R	3263528	2R_3263528_SNP [dm3] 2R_7376023_SNP [dm6]	A	T	8.469e^-5	1	INTRON Dscam1
3L	7195981	3L_7195981_DEL [dm3] 3L_7202881_DEL [dm6]	TG	A	8.528e^-5	1	INTERGENIC
X	6665972	X_6665972_SNP [dm3] X_6771939_SNP [dm6]	G	A	8.587e^-5	1	SPLICE_SITE_REGION shf INTRON COQ7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	2863144	2L_2863144_SNP [dm3] 2L_2863144_SNP [dm6]	C	G	8.588e^-5	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	7703467	3R_7703467_SNP [dm3] 3R_11877745_SNP [dm6]	T	C	8.704e^-5	1	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1180147	X_1180147_SNP [dm3] X_1286114_SNP [dm6]	C	T	8.738e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	9685580	2L_9685580_SNP [dm3] 2L_9685580_SNP [dm6]	A	G	8.758e^-5	1	INTRON Pka-C1
3R	15934974	3R_15934974_SNP [dm3] 3R_20109252_SNP [dm6]	G	C	8.821e^-5	1	INTERGENIC
3R	19549967	3R_19549967_SNP [dm3] 3R_23724245_SNP [dm6]	A	T	8.846e^-5	1	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2802077	2L_2802077_SNP [dm3] 2L_2802077_SNP [dm6]	A	G	8.849e^-5	1	INTERGENIC
3L	7405936	3L_7405936_SNP [dm3] 3L_7412836_SNP [dm6]	C	T	8.950e^-5	1	INTERGENIC
X	15968792	X_15968792_SNP [dm3] X_16074759_SNP [dm6]	C	T	9.035e^-5	1	UTR_3_PRIME Tob
2L	2482557	2L_2482557_SNP [dm3] 2L_2482557_SNP [dm6]	T	C	9.275e^-5	1	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	828670	2L_828670_SNP [dm3] 2L_828670_SNP [dm6]	A	T	9.282e^-5	1	INTRON dock	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18174204	3L_18174204_SNP [dm3] 3L_18181104_SNP [dm6]	C	T	9.335e^-5	1	INTRON W
2L	16149214	2L_16149214_SNP [dm3] 2L_16149214_SNP [dm6]	T	G	9.391e^-5	1	INTERGENIC
2R	13942607	2R_13942607_SNP [dm3] 2R_18055102_SNP [dm6]	C	A	9.606e^-5	1	DOWNSTREAM CG10912 EXON CR45313	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6712670	2L_6712670_SNP [dm3] 2L_6712670_SNP [dm6]	C	G	9.632e^-5	1	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
2L	16508947	2L_16508947_SNP [dm3] 2L_16508947_SNP [dm6]	A	G	9.692e^-5	1	UTR_3_PRIME CG5953 DOWNSTREAM CG5953
3L	7406876	3L_7406876_SNP [dm3] 3L_7413776_SNP [dm6]	C	A	9.725e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13892549	3R_13892549_DEL [dm3] 3R_18066827_DEL [dm6]	TT	T	9.807e^-5	1	INTERGENIC
3L	5564722	3L_5564722_SNP [dm3] 3L_5571622_SNP [dm6]	G	A	9.884e^-5	1	INTRON Msr-110
2R	9573094	2R_9573094_SNP [dm3] 2R_13685589_SNP [dm6]	T	A	9.977e^-5	1	INTRON fas
2L	5637143	2L_5637143_SNP [dm3] 2L_5637143_SNP [dm6]	C	T	9.997e^-5	1	INTRON CG31646
3R	13973039	3R_13973039_SNP [dm3] 3R_18147317_SNP [dm6]	G	A	1.004e^-4	1	INTERGENIC
3R	11108606	3R_11108606_SNP [dm3] 3R_15282884_SNP [dm6]	G	A	1.005e^-4	1	INTRON Tm1
2L	14674204	2L_14674204_SNP [dm3] 2L_14674204_SNP [dm6]	G	A	1.007e^-4	1	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7703545	3R_7703545_SNP [dm3] 3R_11877823_SNP [dm6]	T	G	1.015e^-4	1	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12329980	2L_12329980_SNP [dm3] 2L_12329980_SNP [dm6]	C	A	1.023e^-4	1	INTERGENIC
2L	906475	2L_906475_SNP [dm3] 2L_906475_SNP [dm6]	G	A	1.045e^-4	1	INTERGENIC
2L	6489041	2L_6489041_SNP [dm3] 2L_6489041_SNP [dm6]	A	T	1.058e^-4	1	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9304358	3L_9304358_SNP [dm3] 3L_9311258_SNP [dm6]	T	A	1.061e^-4	1	INTERGENIC
2R	12329857	2R_12329857_SNP [dm3] 2R_16442352_SNP [dm6]	G	A	1.061e^-4	1	UPSTREAM CG4409 INTERGENIC
2L	5865017	2L_5865017_SNP [dm3] 2L_5865017_SNP [dm6]	A	C	1.072e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15152075	3L_15152075_DEL [dm3] 3L_15158975_DEL [dm6]	AAATTGATCAATTAAAATCC...	A	1.076e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	6199975	3R_6199975_SNP [dm3] 3R_10374253_SNP [dm6]	C	T	1.087e^-4	1	INTRON Rfx
3R	16612165	3R_16612165_SNP [dm3] 3R_20786443_SNP [dm6]	G	A	1.099e^-4	1	INTRON Syp
2L	17563640	2L_17563640_SNP [dm3] 2L_17563640_SNP [dm6]	G	T	1.099e^-4	1	INTERGENIC
X	6631686	X_6631686_SNP [dm3] X_6737653_SNP [dm6]	T	C	1.100e^-4	1	INTRON CG3168
3L	6978916	3L_6978916_SNP [dm3] 3L_6985816_SNP [dm6]	T	C	1.113e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16169667	3L_16169667_SNP [dm3] 3L_16176567_SNP [dm6]	A	C	1.116e^-4	1	UPSTREAM CR45754 DOWNSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18164918	2R_18164918_SNP [dm3] 2R_22277413_SNP [dm6]	C	T	1.116e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17563611	2L_17563611_SNP [dm3] 2L_17563611_SNP [dm6]	A	G	1.119e^-4	1	INTERGENIC
3L	17521398	3L_17521398_SNP [dm3] 3L_17528298_SNP [dm6]	C	T	1.128e^-4	1	NON_SYNONYMOUS_CODING Edc3 DOWNSTREAM snoRNA:Edc3-a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18524677	2L_18524677_SNP [dm3] 2L_18524677_SNP [dm6]	G	T	1.136e^-4	1	UPSTREAM CR44903 INTRON CG10211	TF binding site mE1_TFBS_inv
2L	19321037	2L_19321037_SNP [dm3] 2L_19321037_SNP [dm6]	G	C	1.140e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6637630	2R_6637630_SNP [dm3] 2R_10750125_SNP [dm6]	A	G	1.140e^-4	1	INTRON CG33144
2R	16570011	2R_16570011_SNP [dm3] 2R_20682506_SNP [dm6]	C	T	1.148e^-4	1	INTERGENIC
3R	19550002	3R_19550002_SNP [dm3] 3R_23724280_SNP [dm6]	A	G	1.151e^-4	1	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7196282	3L_7196282_SNP [dm3] 3L_7203182_SNP [dm6]	T	G	1.154e^-4	1	INTERGENIC
2R	7857994	2R_7857994_SNP [dm3] 2R_11970489_SNP [dm6]	A	T	1.167e^-4	1	UPSTREAM CG8290 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	18158063	3L_18158063_SNP [dm3] 3L_18164963_SNP [dm6]	T	G	1.167e^-4	1	INTERGENIC
2L	7806460	2L_7806460_SNP [dm3] 2L_7806460_SNP [dm6]	C	A	1.175e^-4	1	NON_SYNONYMOUS_CODING cdc14
3L	5329627	3L_5329627_SNP [dm3] 3L_5336527_SNP [dm6]	C	T	1.186e^-4	1	INTERGENIC
X	2871194	X_2871194_SNP [dm3] X_2977161_SNP [dm6]	T	C	1.186e^-4	1	INTRON kirre
3L	15917202	3L_15917202_SNP [dm3] 3L_15924102_SNP [dm6]	T	A	1.189e^-4	1	INTRON sff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15178721	3L_15178721_SNP [dm3] 3L_15185621_SNP [dm6]	A	C	1.207e^-4	1	INTERGENIC
3L	11850242	3L_11850242_SNP [dm3] 3L_11857142_SNP [dm6]	A	C	1.212e^-4	1	INTRON CG44837
2L	16150156	2L_16150156_SNP [dm3] 2L_16150156_SNP [dm6]	C	G	1.213e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18524672	2L_18524672_INS [dm3] 2L_18524672_INS [dm6]	A	TG	1.218e^-4	1	UPSTREAM CR44903 INTRON CG10211	TF binding site mE1_TFBS_inv
2L	18524682	2L_18524682_INS [dm3] 2L_18524682_INS [dm6]	G	GC	1.218e^-4	1	UPSTREAM CR44903 INTRON CG10211	TF binding site mE1_TFBS_inv
3R	14340736	3R_14340736_SNP [dm3] 3R_18515014_SNP [dm6]	T	A	1.218e^-4	1	UTR_5_PRIME fru INTRON fru
2R	16410274	2R_16410274_SNP [dm3] 2R_20522769_SNP [dm6]	G	T	1.227e^-4	1	INTERGENIC
2R	9663422	2R_9663422_SNP [dm3] 2R_13775917_SNP [dm6]	G	A	1.236e^-4	1	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11690315	3R_11690315_SNP [dm3] 3R_15864593_SNP [dm6]	A	G	1.237e^-4	1	INTRON CG31183
3R	20352113	3R_20352113_SNP [dm3] 3R_24526391_SNP [dm6]	T	C	1.255e^-4	1	INTRON CG13618
2R	10333471	2R_10333471_SNP [dm3] 2R_14445966_SNP [dm6]	C	A	1.259e^-4	1	INTRON Oaz
3R	25282080	3R_25282080_SNP [dm3] 3R_29456358_SNP [dm6]	T	C	1.265e^-4	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19862744	2L_19862744_SNP [dm3] 2L_19862744_SNP [dm6]	C	A	1.267e^-4	1	INTRON sick
2R	16324819	2R_16324819_SNP [dm3] 2R_20437314_SNP [dm6]	A	T	1.269e^-4	1	INTRON CG12484
3L	10627138	3L_10627138_SNP [dm3] 3L_10634038_SNP [dm6]	A	C	1.275e^-4	1	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	10627139	3L_10627139_SNP [dm3] 3L_10634039_SNP [dm6]	C	A	1.275e^-4	1	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	15917223	3L_15917223_SNP [dm3] 3L_15924123_SNP [dm6]	A	G	1.284e^-4	1	INTRON sff	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16508944	2L_16508944_SNP [dm3] 2L_16508944_SNP [dm6]	T	C	1.285e^-4	1	UTR_3_PRIME CG5953 DOWNSTREAM CG5953
2L	17155446	2L_17155446_INS [dm3] 2L_17155446_INS [dm6]	A	AA	1.287e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20697989	2R_20697989_DEL [dm3] 2R_24810466_DEL [dm6]	ACATA	A	1.290e^-4	1	DOWNSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	4338572	2L_4338572_SNP [dm3] 2L_4338572_SNP [dm6]	T	G	1.305e^-4	1	UPSTREAM Atet INTRON Atet
3R	9690506	3R_9690506_SNP [dm3] 3R_13864784_SNP [dm6]	G	A	1.315e^-4	1	INTERGENIC
2L	1996142	2L_1996142_SNP [dm3] 2L_1996142_SNP [dm6]	C	T	1.317e^-4	1	DOWNSTREAM CG33543 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	10815350	2L_10815350_SNP [dm3] 2L_10815350_SNP [dm6]	A	C	1.327e^-4	1	INTRON Nos
2R	15554760	2R_15554760_SNP [dm3] 2R_19667255_SNP [dm6]	T	A	1.340e^-4	1	INTRON hrg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	3820296	3L_3820296_SNP [dm3] 3L_3820296_SNP [dm6]	C	T	1.352e^-4	1	INTRON enc
2R	7800808	2R_7800808_SNP [dm3] 2R_11913303_SNP [dm6]	C	A	1.353e^-4	1	UPSTREAM CG13183 INTERGENIC
2L	6090501	2L_6090501_SNP [dm3] 2L_6090501_SNP [dm6]	C	T	1.357e^-4	1	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11249654	2R_11249654_SNP [dm3] 2R_15362149_SNP [dm6]	C	T	1.359e^-4	1	SYNONYMOUS_CODING unc-5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12000585	2R_12000585_SNP [dm3] 2R_16113080_SNP [dm6]	G	C	1.360e^-4	1	INTRON Asph
2L	9339396	2L_9339396_SNP [dm3] 2L_9339396_SNP [dm6]	C	A	1.366e^-4	1	INTRON Eaat1	TF binding site mE1_TFBS_inv
3R	5932155	3R_5932155_SNP [dm3] 3R_10106433_SNP [dm6]	T	C	1.366e^-4	1	INTRON Fmr1
X	12822542	X_12822542_SNP [dm3] X_12928509_SNP [dm6]	G	T	1.369e^-4	1	INTRON fne
3L	15151985	3L_15151985_SNP [dm3] 3L_15158885_SNP [dm6]	A	T	1.381e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	15554986	2R_15554986_SNP [dm3] 2R_19667481_SNP [dm6]	G	A	1.397e^-4	1	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	18524675	2L_18524675_SNP [dm3] 2L_18524675_SNP [dm6]	C	T	1.397e^-4	1	UPSTREAM CR44903 INTRON CG10211	TF binding site mE1_TFBS_inv
2R	7857998	2R_7857998_INS [dm3] 2R_11970493_INS [dm6]	T	TTTTTCATTTTTTAACTTAT...	1.403e^-4	1	UPSTREAM CG8290 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	18544824	3L_18544824_SNP [dm3] 3L_18551724_SNP [dm6]	T	C	1.411e^-4	1	INTERGENIC
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	1.414e^-4	1	DOWNSTREAM CG31910 INTRON CG11221
2L	2489775	2L_2489775_SNP [dm3] 2L_2489775_SNP [dm6]	T	C	1.417e^-4	1	UTR_3_PRIME Slh DOWNSTREAM Slh	enhancer FlyBase TF binding site mE1_TFBS_chinmo
3R	4941921	3R_4941921_SNP [dm3] 3R_9116199_SNP [dm6]	T	C	1.422e^-4	1	INTRON pum
3R	11108638	3R_11108638_INS [dm3] 3R_15282916_INS [dm6]	C	ATTTA	1.425e^-4	1	INTRON Tm1
3L	10398261	3L_10398261_SNP [dm3] 3L_10405161_SNP [dm6]	G	A	1.425e^-4	1	INTERGENIC
3L	9263705	3L_9263705_SNP [dm3] 3L_9270605_SNP [dm6]	C	T	1.431e^-4	1	INTRON GluRIB
2L	2631463	2L_2631463_SNP [dm3] 2L_2631463_SNP [dm6]	T	G	1.434e^-4	1	INTERGENIC
3R	9685422	3R_9685422_SNP [dm3] 3R_13859700_SNP [dm6]	C	T	1.438e^-4	1	INTERGENIC
3L	18086649	3L_18086649_SNP [dm3] 3L_18093549_SNP [dm6]	G	C	1.446e^-4	1	INTRON CG13698
3R	9689636	3R_9689636_SNP [dm3] 3R_13863914_SNP [dm6]	C	T	1.448e^-4	1	INTERGENIC
2R	20698085	2R_20698085_SNP [dm3] 2R_24810562_SNP [dm6]	G	T	1.457e^-4	1	DOWNSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	14767600	X_14767600_SNP [dm3] X_14873567_SNP [dm6]	A	T	1.460e^-4	1	INTRON Flo2
2L	9512683	2L_9512683_SNP [dm3] 2L_9512683_SNP [dm6]	G	A	1.461e^-4	1	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	12245949	3L_12245949_SNP [dm3] 3L_12252849_SNP [dm6]	A	C	1.464e^-4	1	INTRON app
X	16168116	X_16168116_SNP [dm3] X_16274083_SNP [dm6]	G	A	1.469e^-4	1	DOWNSTREAM Mfe2 INTRON kat80
2L	6489197	2L_6489197_SNP [dm3] 2L_6489197_SNP [dm6]	C	A	1.494e^-4	1	SYNONYMOUS_CODING epsilonCOP UPSTREAM KFase DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11132823	3L_11132823_DEL [dm3] 3L_11139723_DEL [dm6]	AA	A	1.506e^-4	1	INTRON CG32082
3L	15178853	3L_15178853_SNP [dm3] 3L_15185753_SNP [dm6]	C	T	1.514e^-4	1	INTERGENIC
3R	25282077	3R_25282077_SNP [dm3] 3R_29456355_SNP [dm6]	C	T	1.517e^-4	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25282081	3R_25282081_SNP [dm3] 3R_29456359_SNP [dm6]	G	A	1.517e^-4	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7087671	3L_7087671_SNP [dm3] 3L_7094571_SNP [dm6]	G	C	1.525e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	15158891	3L_15158891_SNP [dm3] 3L_15165791_SNP [dm6]	G	A	1.538e^-4	1	INTERGENIC
3L	11515996	3L_11515996_SNP [dm3] 3L_11522896_SNP [dm6]	A	G	1.538e^-4	1	UTR_3_PRIME Mob2 UPSTREAM CG11714
3L	11516006	3L_11516006_SNP [dm3] 3L_11522906_SNP [dm6]	A	G	1.538e^-4	1	UTR_3_PRIME Mob2 UPSTREAM CG11714
2R	7693521	2R_7693521_DEL [dm3] 2R_11806016_DEL [dm6]	CA	C	1.544e^-4	1	INTRON ths
3R	25282061	3R_25282061_SNP [dm3] 3R_29456339_SNP [dm6]	G	A	1.558e^-4	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9690278	3R_9690278_SNP [dm3] 3R_13864556_SNP [dm6]	A	T	1.559e^-4	1	INTERGENIC
2L	1247108	2L_1247108_SNP [dm3] 2L_1247108_SNP [dm6]	T	G	1.578e^-4	1	INTERGENIC
3L	15152046	3L_15152046_SNP [dm3] 3L_15158946_SNP [dm6]	T	G	1.580e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	18434839	3L_18434839_SNP [dm3] 3L_18441739_SNP [dm6]	T	C	1.598e^-4	1	EXON CR43280
3R	12900741	3R_12900741_SNP [dm3] 3R_17075019_SNP [dm6]	G	A	1.605e^-4	1	SYNONYMOUS_CODING Keap1
3L	15151987	3L_15151987_SNP [dm3] 3L_15158887_SNP [dm6]	T	A	1.608e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	4028989	2L_4028989_SNP [dm3] 2L_4028989_SNP [dm6]	T	G	1.624e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	6207144	X_6207144_SNP [dm3] X_6313111_SNP [dm6]	C	A	1.635e^-4	1	INTRON CG15894
2R	18164908	2R_18164908_SNP [dm3] 2R_22277403_SNP [dm6]	C	T	1.641e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18843736	2R_18843736_SNP [dm3] 2R_22956213_SNP [dm6]	G	A	1.647e^-4	1	DOWNSTREAM CR44780 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22018915	3R_22018915_SNP [dm3] 3R_26193193_SNP [dm6]	A	T	1.648e^-4	1	INTERGENIC
2L	19702888	2L_19702888_SNP [dm3] 2L_19702888_SNP [dm6]	C	G	1.649e^-4	1	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5338794	2L_5338794_SNP [dm3] 2L_5338794_SNP [dm6]	T	A	1.664e^-4	1	UPSTREAM fusl DOWNSTREAM CG12512 INTERGENIC
3L	3242362	3L_3242362_SNP [dm3] 3L_3242362_SNP [dm6]	G	T	1.669e^-4	1	DOWNSTREAM CG12078 INTERGENIC
3R	11108626	3R_11108626_SNP [dm3] 3R_15282904_SNP [dm6]	T	C	1.676e^-4	1	INTRON Tm1
3L	7583971	3L_7583971_SNP [dm3] 3L_7590871_SNP [dm6]	A	G	1.677e^-4	1	SYNONYMOUS_CODING CG7716
3L	3026672	3L_3026672_SNP [dm3] 3L_3026672_SNP [dm6]	C	T	1.677e^-4	1	UPSTREAM aly INTERGENIC
2R	7693310	2R_7693310_SNP [dm3] 2R_11805805_SNP [dm6]	G	T	1.684e^-4	1	INTRON ths
3R	12185929	3R_12185929_SNP [dm3] 3R_16360207_SNP [dm6]	G	T	1.685e^-4	1	UPSTREAM CG17931 & 1 other DOWNSTREAM CG14880 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15152445	3L_15152445_SNP [dm3] 3L_15159345_SNP [dm6]	T	C	1.687e^-4	1	SYNONYMOUS_CODING Prp31 UPSTREAM Msh6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2290615	X_2290615_SNP [dm3] X_2396582_SNP [dm6]	G	A	1.696e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
2R	18164845	2R_18164845_INS [dm3] 2R_22277340_INS [dm6]	C	ATCGCTTT	1.705e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15151969	3L_15151969_SNP [dm3] 3L_15158869_SNP [dm6]	T	C	1.714e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	1969139	3L_1969139_SNP [dm3] 3L_1969139_SNP [dm6]	T	A	1.716e^-4	1	INTRON CG1927
2R	7856210	2R_7856210_SNP [dm3] 2R_11968705_SNP [dm6]	A	G	1.728e^-4	1	UPSTREAM PI31 INTRON PI31
X	6207113	X_6207113_SNP [dm3] X_6313080_SNP [dm6]	T	G	1.735e^-4	1	INTRON CG15894
2R	15547184	2R_15547184_SNP [dm3] 2R_19659679_SNP [dm6]	G	C	1.736e^-4	1	DOWNSTREAM CG15125 EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19944472	2R_19944472_SNP [dm3] 2R_24056949_SNP [dm6]	C	T	1.740e^-4	1	SYNONYMOUS_CODING CG13563 UPSTREAM eIF-5A INTRON ppk29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	7693620	2R_7693620_SNP [dm3] 2R_11806115_SNP [dm6]	G	T	1.756e^-4	1	INTRON ths
3R	23521117	3R_23521117_SNP [dm3] 3R_27695395_SNP [dm6]	T	C	1.758e^-4	1	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 1 other
2L	3151560	2L_3151560_SNP [dm3] 2L_3151560_SNP [dm6]	C	T	1.770e^-4	1	INTRON Mad
3L	18802087	3L_18802087_SNP [dm3] 3L_18808987_SNP [dm6]	C	T	1.774e^-4	1	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5890909	3L_5890909_SNP [dm3] 3L_5897809_SNP [dm6]	C	T	1.777e^-4	1	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15161712	3L_15161712_SNP [dm3] 3L_15168612_SNP [dm6]	C	A	1.778e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15917084	3L_15917084_SNP [dm3] 3L_15923984_SNP [dm6]	G	T	1.780e^-4	1	INTRON sff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12926512	3R_12926512_SNP [dm3] 3R_17100790_SNP [dm6]	G	A	1.783e^-4	1	INTRON cher
3L	11850254	3L_11850254_SNP [dm3] 3L_11857154_SNP [dm6]	A	G	1.787e^-4	1	INTRON CG44837
X	7225658	X_7225658_SNP [dm3] X_7331625_SNP [dm6]	A	G	1.792e^-4	1	SYNONYMOUS_CODING CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3R	19500198	3R_19500198_SNP [dm3] 3R_23674476_SNP [dm6]	A	C	1.793e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2120028	2L_2120028_SNP [dm3] 2L_2120028_SNP [dm6]	C	T	1.795e^-4	1	INTERGENIC
2L	4729086	2L_4729086_DEL [dm3] 2L_4729086_DEL [dm6]	CA	C	1.797e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12330179	2L_12330179_SNP [dm3] 2L_12330179_SNP [dm6]	A	G	1.802e^-4	1	INTERGENIC
3R	26038406	3R_26038406_SNP [dm3] 3R_30212684_SNP [dm6]	A	C	1.802e^-4	1	UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 2 others INTERGENIC
2R	19097551	2R_19097551_SNP [dm3] 2R_23210028_SNP [dm6]	T	C	1.815e^-4	1	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	3590848	3L_3590848_SNP [dm3] 3L_3590848_SNP [dm6]	G	A	1.822e^-4	1	INTRON Eip63E
3L	12675639	3L_12675639_SNP [dm3] 3L_12682539_SNP [dm6]	A	C	1.838e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15076114	X_15076114_SNP [dm3] X_15182081_SNP [dm6]	A	C	1.840e^-4	1	INTRON CG43737
3L	7449630	3L_7449630_SNP [dm3] 3L_7456530_SNP [dm6]	C	A	1.843e^-4	1	SYNONYMOUS_CODING ppk26	TF binding site mE1_TFBS_cad
3L	11339393	3L_11339393_SNP [dm3] 3L_11346293_SNP [dm6]	T	G	1.845e^-4	1	INTERGENIC
3R	21349020	3R_21349020_SNP [dm3] 3R_25523298_SNP [dm6]	G	A	1.857e^-4	1	INTRON msi
3L	15161714	3L_15161714_SNP [dm3] 3L_15168614_SNP [dm6]	A	G	1.857e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22162820	3R_22162820_SNP [dm3] 3R_26337098_SNP [dm6]	A	T	1.858e^-4	1	INTRON CG33970
3L	10627144	3L_10627144_SNP [dm3] 3L_10634044_SNP [dm6]	G	T	1.861e^-4	1	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2R	20562060	2R_20562060_SNP [dm3] 2R_24674537_SNP [dm6]	A	G	1.863e^-4	1	DOWNSTREAM Mmp1 INTRON Mmp1
3L	10657546	3L_10657546_SNP [dm3] 3L_10664446_SNP [dm6]	G	T	1.865e^-4	1	UPSTREAM simj DOWNSTREAM CG32068 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	7477376	3L_7477376_SNP [dm3] 3L_7484276_SNP [dm6]	A	T	1.865e^-4	1	INTERGENIC
3L	3961737	3L_3961737_SNP [dm3] 3L_3961737_SNP [dm6]	G	A	1.872e^-4	1	SYNONYMOUS_CODING CG12605
3R	9696067	3R_9696067_DEL [dm3] 3R_13870345_DEL [dm6]	GGAATGGGAATGG...	G	1.886e^-4	1	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2207926	3L_2207926_SNP [dm3] 3L_2207926_SNP [dm6]	C	G	1.890e^-4	1	INTERGENIC
3R	22162799	3R_22162799_SNP [dm3] 3R_26337077_SNP [dm6]	T	C	1.891e^-4	1	INTRON CG33970
3L	18176848	3L_18176848_SNP [dm3] 3L_18183748_SNP [dm6]	C	T	1.893e^-4	1	INTRON W
2L	5765946	2L_5765946_SNP [dm3] 2L_5765946_SNP [dm6]	C	T	1.894e^-4	1	INTRON obst-E
2R	18934756	2R_18934756_DEL [dm3] 2R_23047233_DEL [dm6]	CTGC	C	1.902e^-4	1		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15151971	3L_15151971_SNP [dm3] 3L_15158871_SNP [dm6]	G	A	1.907e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	15218379	3L_15218379_SNP [dm3] 3L_15225279_SNP [dm6]	T	C	1.909e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2718723	2L_2718723_SNP [dm3] 2L_2718723_SNP [dm6]	G	A	1.912e^-4	1	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
2R	20703436	2R_20703436_SNP [dm3] 2R_24815913_SNP [dm6]	C	A	1.916e^-4	1	INTRON Dll
3R	13969867	3R_13969867_SNP [dm3] 3R_18144145_SNP [dm6]	T	C	1.923e^-4	1	INTERGENIC
2L	17144126	2L_17144126_SNP [dm3] 2L_17144126_SNP [dm6]	A	T	1.926e^-4	1	INTRON beat-IIIa & 1 other
2L	3322271	2L_3322271_SNP [dm3] 2L_3322271_SNP [dm6]	A	T	1.931e^-4	1	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13921445	3R_13921445_SNP [dm3] 3R_18095723_SNP [dm6]	C	T	1.932e^-4	1	SPLICE_SITE_REGION sr INTRON sr
2L	4338569	2L_4338569_SNP [dm3] 2L_4338569_SNP [dm6]	C	T	1.941e^-4	1	UPSTREAM Atet INTRON Atet
3L	14447542	3L_14447542_SNP [dm3] 3L_14454442_SNP [dm6]	T	G	1.942e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11259105	2R_11259105_SNP [dm3] 2R_15371600_SNP [dm6]	A	G	1.944e^-4	1	UPSTREAM CR44458 & 1 other DOWNSTREAM CR44459 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
X	3817424	X_3817424_SNP [dm3] X_3923391_SNP [dm6]	T	C	1.948e^-4	1	INTRON CG42541
X	18361381	X_18361381_SNP [dm3] X_18467348_SNP [dm6]	C	T	1.963e^-4	1	INTRON CG32547
X	18361384	X_18361384_SNP [dm3] X_18467351_SNP [dm6]	T	C	1.963e^-4	1	INTRON CG32547
3L	5357992	3L_5357992_SNP [dm3] 3L_5364892_SNP [dm6]	G	C	1.972e^-4	1	INTRON Uev1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	7693525	2R_7693525_SNP [dm3] 2R_11806020_SNP [dm6]	A	G	1.974e^-4	1	INTRON ths
3L	1257622	3L_1257622_SNP [dm3] 3L_1257622_SNP [dm6]	G	T	1.978e^-4	1	INTRON CG9134
2L	6757677	2L_6757677_INS [dm3] 2L_6757677_INS [dm6]	T	TT	1.980e^-4	1	DOWNSTREAM CG11322 INTERGENIC
2L	9685556	2L_9685556_SNP [dm3] 2L_9685556_SNP [dm6]	T	G	1.988e^-4	1	INTRON Pka-C1
3L	12245984	3L_12245984_DEL [dm3] 3L_12252884_DEL [dm6]	TCACATTTCTTGGACCCAT...	T	1.989e^-4	1	INTRON app
3L	1278762	3L_1278762_SNP [dm3] 3L_1278762_SNP [dm6]	G	A	1.997e^-4	1	INTRON CG32333
3L	10657545	3L_10657545_SNP [dm3] 3L_10664445_SNP [dm6]	A	T	1.998e^-4	1	UPSTREAM simj DOWNSTREAM CG32068 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	4287032	X_4287032_SNP [dm3] X_4392999_SNP [dm6]	G	T	2.009e^-4	1	INTRON CR32773
3R	22018935	3R_22018935_SNP [dm3] 3R_26193213_SNP [dm6]	T	C	2.019e^-4	1	INTERGENIC
2R	2725169	2R_2725169_SNP [dm3] 2R_6837664_SNP [dm6]	A	T	2.025e^-4	1	UTR_3_PRIME CG15236 DOWNSTREAM CG9445
X	8035978	X_8035978_SNP [dm3] X_8141945_SNP [dm6]	C	T	2.027e^-4	1	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	16168562	X_16168562_SNP [dm3] X_16274529_SNP [dm6]	C	A	2.036e^-4	1	DOWNSTREAM Mfe2 INTRON kat80
3R	22162940	3R_22162940_SNP [dm3] 3R_26337218_SNP [dm6]	T	G	2.047e^-4	1	INTRON CG33970
3L	649315	3L_649315_SNP [dm3] 3L_649315_SNP [dm6]	C	T	2.051e^-4	1	SYNONYMOUS_CODING Gale	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3322277	2L_3322277_SNP [dm3] 2L_3322277_SNP [dm6]	G	A	2.058e^-4	1	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27478951	3R_27478951_SNP [dm3] 3R_31653229_SNP [dm6]	A	G	2.072e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
X	3516697	X_3516697_DEL [dm3] X_3622664_DEL [dm6]	GTCGGGATGGATGATGATG...	G	2.098e^-4	1	INTRON AstA-R1
3L	16061857	3L_16061857_SNP [dm3] 3L_16068757_SNP [dm6]	C	T	2.101e^-4	1	SYNONYMOUS_CODING Mbs INTRON Mbs	TF binding site mE1_TFBS_cad
3R	22587614	3R_22587614_SNP [dm3] 3R_26761892_SNP [dm6]	G	T	2.101e^-4	1	INTERGENIC
3R	12032504	3R_12032504_SNP [dm3] 3R_16206782_SNP [dm6]	A	T	2.104e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11845217	3L_11845217_SNP [dm3] 3L_11852117_SNP [dm6]	C	A	2.109e^-4	1	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16681785	X_16681785_SNP [dm3] X_16787752_SNP [dm6]	T	G	2.123e^-4	1	START_GAINED Sap30 UTR_5_PRIME Sap30 UPSTREAM CG9609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11843919	3L_11843919_INS [dm3] 3L_11850819_INS [dm6]	T	TTTGGGAAATCT...	2.126e^-4	1	UTR_3_PRIME CG44837
2L	6781148	2L_6781148_SNP [dm3] 2L_6781148_SNP [dm6]	G	A	2.127e^-4	1	INTRON nrv1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	26117669	3R_26117669_SNP [dm3] 3R_30291947_SNP [dm6]	A	G	2.151e^-4	1	INTRON hdc
2L	6186461	2L_6186461_SNP [dm3] 2L_6186461_SNP [dm6]	T	A	2.151e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19098179	2R_19098179_SNP [dm3] 2R_23210656_SNP [dm6]	C	A	2.154e^-4	1	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6358668	3L_6358668_SNP [dm3] 3L_6365568_SNP [dm6]	C	T	2.156e^-4	1	INTERGENIC
3R	22018916	3R_22018916_SNP [dm3] 3R_26193194_SNP [dm6]	C	T	2.161e^-4	1	INTERGENIC
3L	11336928	3L_11336928_SNP [dm3] 3L_11343828_SNP [dm6]	T	C	2.166e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	12245981	3L_12245981_SNP [dm3] 3L_12252881_SNP [dm6]	T	A	2.173e^-4	1	INTRON app
2L	17155422	2L_17155422_SNP [dm3] 2L_17155422_SNP [dm6]	T	C	2.174e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12245919	3L_12245919_SNP [dm3] 3L_12252819_SNP [dm6]	T	G	2.192e^-4	1	INTRON app
3L	12245922	3L_12245922_SNP [dm3] 3L_12252822_SNP [dm6]	T	A	2.192e^-4	1	INTRON app
3L	283605	3L_283605_SNP [dm3] 3L_283605_SNP [dm6]	C	A	2.207e^-4	1	INTRON RhoGEF3
3R	22211469	3R_22211469_SNP [dm3] 3R_26385747_SNP [dm6]	A	G	2.215e^-4	1	INTERGENIC
3L	11843958	3L_11843958_SNP [dm3] 3L_11850858_SNP [dm6]	C	T	2.221e^-4	1	UTR_3_PRIME CG44837
3L	12245973	3L_12245973_SNP [dm3] 3L_12252873_SNP [dm6]	T	C	2.236e^-4	1	INTRON app
3L	15162454	3L_15162454_DEL [dm3] 3L_15169354_DEL [dm6]	GG	G	2.241e^-4	1	INTERGENIC
X	17007097	X_17007097_SNP [dm3] X_17113064_SNP [dm6]	C	G	2.263e^-4	1	INTRON CG5004
3L	6588569	3L_6588569_SNP [dm3] 3L_6595469_SNP [dm6]	C	G	2.265e^-4	1	SYNONYMOUS_CODING ndl
2L	5332568	2L_5332568_SNP [dm3] 2L_5332568_SNP [dm6]	C	T	2.266e^-4	1	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5567369	3L_5567369_SNP [dm3] 3L_5574269_SNP [dm6]	A	T	2.267e^-4	1	INTRON Msr-110
3L	5567370	3L_5567370_SNP [dm3] 3L_5574270_SNP [dm6]	G	A	2.267e^-4	1	INTRON Msr-110
2R	14898129	2R_14898129_SNP [dm3] 2R_19010624_SNP [dm6]	G	A	2.269e^-4	1	INTERGENIC
X	20532881	X_20532881_SNP [dm3] X_20661854_SNP [dm6]	G	A	2.276e^-4	1	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
3L	8201579	3L_8201579_SNP [dm3] 3L_8208479_SNP [dm6]	C	T	2.276e^-4	1	INTERGENIC
2R	2719183	2R_2719183_SNP [dm3] 2R_6831678_SNP [dm6]	C	T	2.277e^-4	1	NON_SYNONYMOUS_CODING CG34215 INTRON CG15236
3L	15151854	3L_15151854_SNP [dm3] 3L_15158754_SNP [dm6]	G	A	2.287e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	10867401	3L_10867401_DEL [dm3] 3L_10874301_DEL [dm6]	AA	A	2.295e^-4	1	INTRON tna	TF binding site mE1_TFBS_cad
3R	14642269	3R_14642269_SNP [dm3] 3R_18816547_SNP [dm6]	C	T	2.296e^-4	1	INTRON CG18208
X	16514267	X_16514267_SNP [dm3] X_16620234_SNP [dm6]	T	C	2.305e^-4	1	INTRON CG9782	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16802677	2L_16802677_SNP [dm3] 2L_16802677_SNP [dm6]	A	G	2.306e^-4	1	SYNONYMOUS_CODING CG13280
2L	17501204	2L_17501204_SNP [dm3] 2L_17501204_SNP [dm6]	A	G	2.314e^-4	1	UPSTREAM Dhc36C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	7101991	2R_7101991_SNP [dm3] 2R_11214486_SNP [dm6]	A	G	2.318e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17686908	3R_17686908_SNP [dm3] 3R_21861186_SNP [dm6]	T	C	2.320e^-4	1	UPSTREAM CR45644 DOWNSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3241735	3L_3241735_SNP [dm3] 3L_3241735_SNP [dm6]	C	T	2.321e^-4	1	INTERGENIC
2L	5637204	2L_5637204_SNP [dm3] 2L_5637204_SNP [dm6]	C	T	2.323e^-4	1	INTRON CG31646
3L	14468811	3L_14468811_SNP [dm3] 3L_14475711_SNP [dm6]	A	T	2.328e^-4	1	INTRON bbg
3R	25931149	3R_25931149_SNP [dm3] 3R_30105427_SNP [dm6]	T	C	2.331e^-4	1	INTRON sima
2L	5910819	2L_5910819_SNP [dm3] 2L_5910819_SNP [dm6]	T	A	2.342e^-4	1	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da
3R	14191566	3R_14191566_SNP [dm3] 3R_18365844_SNP [dm6]	C	G	2.344e^-4	1	UPSTREAM Nup43 INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
3L	11455544	3L_11455544_SNP [dm3] 3L_11462444_SNP [dm6]	G	C	2.348e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	12904112	X_12904112_SNP [dm3] X_13010079_SNP [dm6]	C	A	2.353e^-4	1	INTRON rad
X	4287398	X_4287398_SNP [dm3] X_4393365_SNP [dm6]	A	G	2.354e^-4	1	EXON CR32773
3L	4171565	3L_4171565_SNP [dm3] 3L_4171565_SNP [dm6]	A	G	2.356e^-4	1	INTRON Ero1L
2L	6636177	2L_6636177_SNP [dm3] 2L_6636177_SNP [dm6]	T	G	2.357e^-4	1	NON_SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9519098	3L_9519098_SNP [dm3] 3L_9525998_SNP [dm6]	T	A	2.357e^-4	1	UPSTREAM CG33700 INTERGENIC
2R	16915602	2R_16915602_SNP [dm3] 2R_21028097_SNP [dm6]	C	T	2.358e^-4	1	INTERGENIC
3L	7131836	3L_7131836_SNP [dm3] 3L_7138736_SNP [dm6]	A	T	2.359e^-4	1	INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11108557	3R_11108557_SNP [dm3] 3R_15282835_SNP [dm6]	G	T	2.364e^-4	1	INTRON Tm1	TF binding site mE1_TFBS_Trl
2L	9315991	2L_9315991_SNP [dm3] 2L_9315991_SNP [dm6]	T	C	2.367e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15075025	3R_15075025_SNP [dm3] 3R_19249303_SNP [dm6]	C	T	2.376e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	15178927	3L_15178927_SNP [dm3] 3L_15185827_SNP [dm6]	T	G	2.377e^-4	1	INTERGENIC
2L	5637203	2L_5637203_SNP [dm3] 2L_5637203_SNP [dm6]	G	C	2.383e^-4	1	INTRON CG31646
3R	26402755	3R_26402755_SNP [dm3] 3R_30577033_SNP [dm6]	A	C	2.384e^-4	1	DOWNSTREAM tmod INTRON tmod
2L	14674218	2L_14674218_SNP [dm3] 2L_14674218_SNP [dm6]	C	T	2.389e^-4	1	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18824235	X_18824235_SNP [dm3] X_18930202_SNP [dm6]	G	T	2.402e^-4	1	UPSTREAM CG43759 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6492811	2L_6492811_SNP [dm3] 2L_6492811_SNP [dm6]	A	C	2.403e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
3R	13907022	3R_13907022_SNP [dm3] 3R_18081300_SNP [dm6]	C	G	2.418e^-4	1	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10627130	3L_10627130_SNP [dm3] 3L_10634030_SNP [dm6]	G	A	2.428e^-4	1	DOWNSTREAM E_z_ & 1 other INTRON CG34001
X	16051122	X_16051122_SNP [dm3] X_16157089_SNP [dm6]	T	G	2.430e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1258475	3L_1258475_SNP [dm3] 3L_1258475_SNP [dm6]	A	T	2.435e^-4	1	INTRON CG9134
2L	6381600	2L_6381600_SNP [dm3] 2L_6381600_SNP [dm6]	G	T	2.437e^-4	1	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
3R	18533222	3R_18533222_SNP [dm3] 3R_22707500_SNP [dm6]	T	C	2.440e^-4	1	UPSTREAM CG13842 DOWNSTREAM CG4907 INTERGENIC
3R	19500163	3R_19500163_SNP [dm3] 3R_23674441_SNP [dm6]	T	C	2.441e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15152050	3L_15152050_SNP [dm3] 3L_15158950_SNP [dm6]	C	T	2.462e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	6666564	X_6666564_SNP [dm3] X_6772531_SNP [dm6]	C	T	2.467e^-4	1	SYNONYMOUS_CODING COQ7 INTRON shf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4098598	2L_4098598_SNP [dm3] 2L_4098598_SNP [dm6]	T	C	2.472e^-4	1	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9517654	3L_9517654_SNP [dm3] 3L_9524554_SNP [dm6]	A	T	2.473e^-4	1	INTRON CG33700
2R	19143020	2R_19143020_SNP [dm3] 2R_23255497_SNP [dm6]	T	A	2.482e^-4	1	INTERGENIC
2L	19215588	2L_19215588_SNP [dm3] 2L_19215588_SNP [dm6]	C	A	2.483e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16443493	X_16443493_SNP [dm3] X_16549460_SNP [dm6]	C	A	2.483e^-4	1	INTRON Arp2
3R	13814681	3R_13814681_SNP [dm3] 3R_17988959_SNP [dm6]	G	A	2.485e^-4	1	INTRON cpo
3R	3962432	3R_3962432_SNP [dm3] 3R_8136710_SNP [dm6]	A	G	2.486e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
X	9914162	X_9914162_SNP [dm3] X_10020129_SNP [dm6]	G	A	2.491e^-4	1	INTRON Cht6
3L	21053329	3L_21053329_SNP [dm3] 3L_21060229_SNP [dm6]	G	A	2.492e^-4	1	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6588533	3L_6588533_SNP [dm3] 3L_6595433_SNP [dm6]	C	T	2.497e^-4	1	SYNONYMOUS_CODING ndl
3R	15367011	3R_15367011_DEL [dm3] 3R_19541289_DEL [dm6]	CAGC	G	2.499e^-4	1	INTRON Dys
3L	11843949	3L_11843949_SNP [dm3] 3L_11850849_SNP [dm6]	A	G	2.499e^-4	1	UTR_3_PRIME CG44837
X	15538071	X_15538071_SNP [dm3] X_15644038_SNP [dm6]	C	T	2.500e^-4	1	UPSTREAM CG8117 INTERGENIC
3L	7196786	3L_7196786_SNP [dm3] 3L_7203686_SNP [dm6]	G	A	2.505e^-4	1	INTERGENIC
3L	11843960	3L_11843960_SNP [dm3] 3L_11850860_SNP [dm6]	T	G	2.506e^-4	1	UTR_3_PRIME CG44837
2L	19332704	2L_19332704_SNP [dm3] 2L_19332704_SNP [dm6]	G	A	2.519e^-4	1	INTERGENIC
2R	12850737	2R_12850737_SNP [dm3] 2R_16963232_SNP [dm6]	G	T	2.526e^-4	1	INTERGENIC
2R	9573129	2R_9573129_SNP [dm3] 2R_13685624_SNP [dm6]	C	A	2.532e^-4	1	INTRON fas
3R	25343941	3R_25343941_SNP [dm3] 3R_29518219_SNP [dm6]	G	T	2.548e^-4	1	INTERGENIC
2R	11139276	2R_11139276_SNP [dm3] 2R_15251771_SNP [dm6]	T	A	2.550e^-4	1	UPSTREAM scb INTRON scb	TF binding site mE1_TFBS_Trl
2L	5061156	2L_5061156_DEL [dm3] 2L_5061156_DEL [dm6]	TAGAGAGCTTT...	T	2.551e^-4	1	UPSTREAM CR45291 INTRON qtc
2L	4189531	2L_4189531_SNP [dm3] 2L_4189531_SNP [dm6]	C	T	2.556e^-4	1	UTR_3_PRIME CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_inv
3R	14007488	3R_14007488_SNP [dm3] 3R_18181766_SNP [dm6]	T	A	2.557e^-4	1	INTRON cdm	TF binding site mE1_TFBS_cad
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	2.588e^-4	1	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11336708	3L_11336708_DEL [dm3] 3L_11343608_DEL [dm6]	AA	G	2.593e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	1457060	3L_1457060_DEL [dm3] 3L_1457060_DEL [dm6]	TACCGCCGAGTACATGCGGT...	T	2.596e^-4	1	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15293354	3L_15293354_SNP [dm3] 3L_15300254_SNP [dm6]	T	A	2.602e^-4	1	SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
3L	18544739	3L_18544739_SNP [dm3] 3L_18551639_SNP [dm6]	C	T	2.604e^-4	1	INTERGENIC
3R	9580766	3R_9580766_SNP [dm3] 3R_13755044_SNP [dm6]	C	G	2.605e^-4	1	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15868358	3L_15868358_SNP [dm3] 3L_15875258_SNP [dm6]	A	C	2.606e^-4	1	DOWNSTREAM CR44051 INTRON pHCl
3L	6264335	3L_6264335_SNP [dm3] 3L_6271235_SNP [dm6]	G	A	2.611e^-4	1	INTERGENIC
3R	27478901	3R_27478901_SNP [dm3] 3R_31653179_SNP [dm6]	C	T	2.620e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
3L	3027602	3L_3027602_SNP [dm3] 3L_3027602_SNP [dm6]	G	A	2.641e^-4	1	INTERGENIC
3L	423194	3L_423194_SNP [dm3] 3L_423194_SNP [dm6]	C	T	2.642e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11336244	3L_11336244_SNP [dm3] 3L_11343144_SNP [dm6]	C	G	2.670e^-4	1	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	12952896	X_12952896_SNP [dm3] X_13058863_SNP [dm6]	G	C	2.673e^-4	1	INTRON rad
3L	3822899	3L_3822899_SNP [dm3] 3L_3822899_SNP [dm6]	G	C	2.678e^-4	1	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2111844	2L_2111844_SNP [dm3] 2L_2111844_SNP [dm6]	T	A	2.681e^-4	1	INTERGENIC
2R	20716996	2R_20716996_SNP [dm3] 2R_24829473_SNP [dm6]	A	G	2.684e^-4	1	INTRON Dll	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12000602	2R_12000602_SNP [dm3] 2R_16113097_SNP [dm6]	C	A	2.684e^-4	1	INTRON Asph
3L	11132894	3L_11132894_SNP [dm3] 3L_11139794_SNP [dm6]	A	G	2.689e^-4	1	INTRON CG32082
3L	5331534	3L_5331534_SNP [dm3] 3L_5338434_SNP [dm6]	G	A	2.689e^-4	1	INTERGENIC
3L	15152071	3L_15152071_SNP [dm3] 3L_15158971_SNP [dm6]	G	T	2.700e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	6519878	X_6519878_SNP [dm3] X_6625845_SNP [dm6]	T	C	2.721e^-4	1	INTRON pigs
3L	3756865	3L_3756865_SNP [dm3] 3L_3756865_SNP [dm6]	C	T	2.727e^-4	1	INTRON CG32264	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2L	4338281	2L_4338281_SNP [dm3] 2L_4338281_SNP [dm6]	G	A	2.734e^-4	1	UPSTREAM Atet INTRON Atet	TF binding site mE1_TFBS_HSA
2L	2110735	2L_2110735_SNP [dm3] 2L_2110735_SNP [dm6]	G	C	2.736e^-4	1	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	15080287	2L_15080287_SNP [dm3] 2L_15080287_SNP [dm6]	C	T	2.736e^-4	1	INTRON CG15270
3R	12445387	3R_12445387_SNP [dm3] 3R_16619665_SNP [dm6]	A	G	2.750e^-4	1	NON_SYNONYMOUS_CODING CG17560 DOWNSTREAM mir-2494	TF binding site mE1_TFBS_bab1
3R	17995966	3R_17995966_SNP [dm3] 3R_22170244_SNP [dm6]	T	A	2.754e^-4	1	INTRON SKIP
3L	13026632	3L_13026632_SNP [dm3] 3L_13033532_SNP [dm6]	T	C	2.762e^-4	1	UPSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl
2L	6953739	2L_6953739_SNP [dm3] 2L_6953739_SNP [dm6]	G	A	2.773e^-4	1	DOWNSTREAM CG13775 INTRON SA
3R	12926544	3R_12926544_SNP [dm3] 3R_17100822_SNP [dm6]	C	T	2.781e^-4	1	INTRON cher
2L	6983600	2L_6983600_SNP [dm3] 2L_6983600_SNP [dm6]	T	A	2.790e^-4	1	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16669195	X_16669195_SNP [dm3] X_16775162_SNP [dm6]	T	G	2.795e^-4	1	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15671955	2R_15671955_SNP [dm3] 2R_19784450_SNP [dm6]	G	A	2.799e^-4	1	UPSTREAM Obp56g EXON CR45231	regulatory region REDfly_CRMs
2R	2669195	2R_2669195_SNP [dm3] 2R_6781690_SNP [dm6]	G	C	2.807e^-4	1	UPSTREAM Cyp6a2 INTRON Epac
2L	17578887	2L_17578887_SNP [dm3] 2L_17578887_SNP [dm6]	T	A	2.815e^-4	1	UPSTREAM CR45698 INTERGENIC
3L	22412235	3L_22412235_SNP [dm3] 3L_22419135_SNP [dm6]	A	C	2.829e^-4	1	INTERGENIC
X	20231903	X_20231903_SNP [dm3] X_20360876_SNP [dm6]	A	C	2.831e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15916885	2R_15916885_SNP [dm3] 2R_20029380_SNP [dm6]	G	A	2.839e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	2.841e^-4	1	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2R	7563504	2R_7563504_SNP [dm3] 2R_11675999_SNP [dm6]	C	A	2.849e^-4	1	UTR_5_PRIME Tret1-2 INTRON Roc2
3L	15990850	3L_15990850_SNP [dm3] 3L_15997750_SNP [dm6]	A	T	2.865e^-4	1	INTRON CG5830
X	14407106	X_14407106_SNP [dm3] X_14513073_SNP [dm6]	G	A	2.867e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14674194	2L_14674194_SNP [dm3] 2L_14674194_SNP [dm6]	A	G	2.888e^-4	1	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10540814	2R_10540814_SNP [dm3] 2R_14653309_SNP [dm6]	G	A	2.894e^-4	1	INTERGENIC
2R	19896143	2R_19896143_SNP [dm3] 2R_24008620_SNP [dm6]	C	A	2.903e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad
3R	22162944	3R_22162944_SNP [dm3] 3R_26337222_SNP [dm6]	T	C	2.911e^-4	1	INTRON CG33970
2L	8349290	2L_8349290_SNP [dm3] 2L_8349290_SNP [dm6]	T	C	2.932e^-4	1	NON_SYNONYMOUS_CODING CG7778
2R	7826049	2R_7826049_SNP [dm3] 2R_11938544_SNP [dm6]	T	G	2.938e^-4	1	INTERGENIC
2R	7315603	2R_7315603_SNP [dm3] 2R_11428098_SNP [dm6]	A	G	2.938e^-4	1	UPSTREAM Drip INTRON Drip
2R	20699976	2R_20699976_SNP [dm3] 2R_24812453_SNP [dm6]	T	G	2.941e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17152675	2L_17152675_SNP [dm3] 2L_17152675_SNP [dm6]	T	C	2.944e^-4	1	INTRON beat-IIIa & 1 other
X	12904142	X_12904142_SNP [dm3] X_13010109_SNP [dm6]	G	C	2.948e^-4	1	INTRON rad
X	8036008	X_8036008_SNP [dm3] X_8141975_SNP [dm6]	A	C	2.965e^-4	1	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15180743	3L_15180743_SNP [dm3] 3L_15187643_SNP [dm6]	G	A	2.970e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9664899	2R_9664899_DEL [dm3] 2R_13777394_DEL [dm6]	GT	G	2.973e^-4	1	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
2R	14926497	2R_14926497_SNP [dm3] 2R_19038992_SNP [dm6]	A	G	2.973e^-4	1	INTERGENIC
X	19736208	X_19736208_SNP [dm3] X_19842175_SNP [dm6]	C	A	2.977e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	15919538	3L_15919538_SNP [dm3] 3L_15926438_SNP [dm6]	T	C	2.988e^-4	1	INTRON Pka-C3
2L	16956287	2L_16956287_SNP [dm3] 2L_16956287_SNP [dm6]	A	C	2.989e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8584217	3L_8584217_SNP [dm3] 3L_8591117_SNP [dm6]	T	C	2.997e^-4	1	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4287669	X_4287669_SNP [dm3] X_4393636_SNP [dm6]	T	A	3.014e^-4	1	INTRON CR32773
3R	12379069	3R_12379069_SNP [dm3] 3R_16553347_SNP [dm6]	A	G	3.030e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	20550184	2L_20550184_SNP [dm3] 2L_20550184_SNP [dm6]	G	T	3.030e^-4	1	INTERGENIC
2L	16150155	2L_16150155_SNP [dm3] 2L_16150155_SNP [dm6]	C	G	3.031e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2486271	2L_2486271_SNP [dm3] 2L_2486271_SNP [dm6]	G	C	3.042e^-4	1	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	6833349	X_6833349_SNP [dm3] X_6939316_SNP [dm6]	A	G	3.044e^-4	1	INTRON CG14431
3R	9532942	3R_9532942_SNP [dm3] 3R_13707220_SNP [dm6]	C	A	3.047e^-4	1	INTRON Adgf-C
3R	26402872	3R_26402872_SNP [dm3] 3R_30577150_SNP [dm6]	C	A	3.050e^-4	1	DOWNSTREAM tmod INTRON tmod
X	18822015	X_18822015_SNP [dm3] X_18927982_SNP [dm6]	G	T	3.055e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1985519	2L_1985519_SNP [dm3] 2L_1985519_SNP [dm6]	G	A	3.055e^-4	1	SYNONYMOUS_CODING Got2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4511550	3L_4511550_SNP [dm3] 3L_4511550_SNP [dm6]	A	C	3.056e^-4	1	INTRON Tie
3L	5186860	3L_5186860_SNP [dm3] 3L_5193760_SNP [dm6]	A	T	3.060e^-4	1	INTRON shep
2R	20561834	2R_20561834_INS [dm3] 2R_24674311_INS [dm6]	T	TGAGTT	3.060e^-4	1	DOWNSTREAM Mmp1 INTRON Mmp1
2R	8221542	2R_8221542_SNP [dm3] 2R_12334037_SNP [dm6]	C	G	3.065e^-4	1	UPSTREAM tRNA:CR30249 DOWNSTREAM tRNA:CR30250 & 2 others INTERGENIC
X	16168592	X_16168592_SNP [dm3] X_16274559_SNP [dm6]	T	C	3.074e^-4	1	SPLICE_SITE_REGION kat80 DOWNSTREAM Mfe2 INTRON kat80
2L	6488945	2L_6488945_SNP [dm3] 2L_6488945_SNP [dm6]	A	C	3.097e^-4	1	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8585745	3L_8585745_SNP [dm3] 3L_8592645_SNP [dm6]	G	A	3.099e^-4	1	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7435661	X_7435661_SNP [dm3] X_7541628_SNP [dm6]	T	A	3.115e^-4	1	INTRON CG32719
3L	7406833	3L_7406833_SNP [dm3] 3L_7413733_SNP [dm6]	A	T	3.119e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7506887	3L_7506887_SNP [dm3] 3L_7513787_SNP [dm6]	G	A	3.121e^-4	1	INTRON CG7546	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20517090	2L_20517090_SNP [dm3] 2L_20517090_SNP [dm6]	C	T	3.129e^-4	1	INTERGENIC
3L	11869522	3L_11869522_SNP [dm3] 3L_11876422_SNP [dm6]	A	C	3.132e^-4	1	INTRON CG44837
2R	9662885	2R_9662885_SNP [dm3] 2R_13775380_SNP [dm6]	C	T	3.132e^-4	1	SYNONYMOUS_CODING Cpr50Ca
3R	21497933	3R_21497933_SNP [dm3] 3R_25672211_SNP [dm6]	G	A	3.138e^-4	1	INTRON Lgr3
2L	6743202	2L_6743202_SNP [dm3] 2L_6743202_SNP [dm6]	C	T	3.138e^-4	1	INTRON CG11221
3R	22162930	3R_22162930_SNP [dm3] 3R_26337208_SNP [dm6]	G	T	3.161e^-4	1	INTRON CG33970
3L	18782400	3L_18782400_SNP [dm3] 3L_18789300_SNP [dm6]	C	G	3.163e^-4	1	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
X	17286532	X_17286532_SNP [dm3] X_17392499_SNP [dm6]	C	G	3.166e^-4	1	INTERGENIC
2R	16936964	2R_16936964_DEL [dm3] 2R_21049459_DEL [dm6]	TT	T	3.179e^-4	1	DOWNSTREAM shg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14447921	3L_14447921_SNP [dm3] 3L_14454821_SNP [dm6]	G	A	3.191e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10089217	3L_10089217_SNP [dm3] 3L_10096117_SNP [dm6]	G	C	3.199e^-4	1	SYNONYMOUS_CODING CG42825 INTRON dpr6
X	4288292	X_4288292_SNP [dm3] X_4394259_SNP [dm6]	G	A	3.208e^-4	1	UPSTREAM CR32773 INTRON CR32773
3L	5241717	3L_5241717_SNP [dm3] 3L_5248617_SNP [dm6]	A	T	3.213e^-4	1	UPSTREAM shep INTRON shep
X	6650855	X_6650855_SNP [dm3] X_6756822_SNP [dm6]	T	C	3.214e^-4	1	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20150894	3L_20150894_SNP [dm3] 3L_20157794_SNP [dm6]	A	G	3.230e^-4	1	INTRON CG42674
3R	19500196	3R_19500196_SNP [dm3] 3R_23674474_SNP [dm6]	T	C	3.240e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	832416	2L_832416_DEL [dm3] 2L_832416_DEL [dm6]	ACA	G	3.242e^-4	1	UTR_3_PRIME dock DOWNSTREAM dock
X	1173033	X_1173033_SNP [dm3] X_1279000_SNP [dm6]	G	A	3.254e^-4	1	INTERGENIC
3L	10733530	3L_10733530_SNP [dm3] 3L_10740430_SNP [dm6]	T	C	3.260e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16514610	X_16514610_SNP [dm3] X_16620577_SNP [dm6]	C	G	3.262e^-4	1	INTRON CG9782	TF binding site BDTNP1_TFBS_twi
X	12779050	X_12779050_INS [dm3] X_12885017_INS [dm6]	T	TT	3.277e^-4	1	INTRON Pde9
3R	505933	3R_505933_SNP [dm3] 3R_4680211_SNP [dm6]	G	A	3.283e^-4	1	INTRON CG43427	TF binding site mE1_TFBS_kn
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	3.285e^-4	1	INTRON CG8563
3R	4798426	3R_4798426_SNP [dm3] 3R_8972704_SNP [dm6]	G	T	3.288e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11337152	3L_11337152_SNP [dm3] 3L_11344052_SNP [dm6]	C	A	3.295e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	4287252	X_4287252_SNP [dm3] X_4393219_SNP [dm6]	G	T	3.305e^-4	1	INTRON CR32773
2R	20556250	2R_20556250_SNP [dm3] 2R_24668727_SNP [dm6]	A	G	3.312e^-4	1	UPSTREAM CG4806 & 1 other INTRON CG33228	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11108569	3R_11108569_SNP [dm3] 3R_15282847_SNP [dm6]	T	C	3.327e^-4	1	INTRON Tm1	TF binding site mE1_TFBS_Trl
3L	19425642	3L_19425642_SNP [dm3] 3L_19432542_SNP [dm6]	G	A	3.337e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6492386	2L_6492386_SNP [dm3] 2L_6492386_SNP [dm6]	A	G	3.340e^-4	1	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
3L	22412236	3L_22412236_SNP [dm3] 3L_22419136_SNP [dm6]	G	A	3.349e^-4	1	INTERGENIC
2L	6867380	2L_6867380_DEL [dm3] 2L_6867380_DEL [dm6]	TT	T	3.350e^-4	1	INTRON Nha1
3L	6263967	3L_6263967_SNP [dm3] 3L_6270867_SNP [dm6]	T	C	3.352e^-4	1	INTERGENIC
3R	11535105	3R_11535105_SNP [dm3] 3R_15709383_SNP [dm6]	T	C	3.358e^-4	1	DOWNSTREAM CG5404 INTERGENIC
X	20442070	X_20442070_SNP [dm3] X_20571043_SNP [dm6]	C	T	3.370e^-4	1	INTERGENIC
X	6664503	X_6664503_SNP [dm3] X_6770470_SNP [dm6]	C	T	3.371e^-4	1	UTR_3_PRIME CG14438 UPSTREAM COQ7 DOWNSTREAM shf	TF binding site BDTNP1_TFBS_dl
3L	6594665	3L_6594665_SNP [dm3] 3L_6601565_SNP [dm6]	C	G	3.372e^-4	1	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2141038	2L_2141038_SNP [dm3] 2L_2141038_SNP [dm6]	C	T	3.374e^-4	1	SYNONYMOUS_CODING tho2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16814411	2L_16814411_SNP [dm3] 2L_16814411_SNP [dm6]	T	C	3.375e^-4	1	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_sens
3L	22408399	3L_22408399_SNP [dm3] 3L_22415299_SNP [dm6]	C	T	3.376e^-4	1	INTERGENIC
3R	23521103	3R_23521103_SNP [dm3] 3R_27695381_SNP [dm6]	A	C	3.381e^-4	1	NON_SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 1 other
2R	18322984	2R_18322984_SNP [dm3] 2R_22435479_SNP [dm6]	T	C	3.383e^-4	1	INTERGENIC
2R	6428046	2R_6428046_SNP [dm3] 2R_10540541_SNP [dm6]	A	G	3.387e^-4	1	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22393962	3L_22393962_SNP [dm3] 3L_22400862_SNP [dm6]	T	A	3.401e^-4	1	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	18553424	3L_18553424_SNP [dm3] 3L_18560324_SNP [dm6]	A	G	3.403e^-4	1	UTR_5_PRIME AstC-R1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16533830	X_16533830_SNP [dm3] X_16639797_SNP [dm6]	T	G	3.413e^-4	1	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7488629	3L_7488629_SNP [dm3] 3L_7495529_SNP [dm6]	T	G	3.423e^-4	1	INTRON Cyp4d8
3R	14642267	3R_14642267_SNP [dm3] 3R_18816545_SNP [dm6]	C	T	3.423e^-4	1	INTRON CG18208
3R	25931148	3R_25931148_SNP [dm3] 3R_30105426_SNP [dm6]	C	A	3.429e^-4	1	INTRON sima
X	14767636	X_14767636_SNP [dm3] X_14873603_SNP [dm6]	T	A	3.466e^-4	1	INTRON Flo2
2R	9662732	2R_9662732_SNP [dm3] 2R_13775227_SNP [dm6]	G	T	3.468e^-4	1	SYNONYMOUS_CODING Cpr50Ca
X	4286648	X_4286648_SNP [dm3] X_4392615_SNP [dm6]	C	G	3.469e^-4	1	INTRON CR32773
2R	7563390	2R_7563390_SNP [dm3] 2R_11675885_SNP [dm6]	C	T	3.476e^-4	1	UPSTREAM Tret1-2 INTRON Roc2
3R	1642203	3R_1642203_SNP [dm3] 3R_5816481_SNP [dm6]	A	G	3.486e^-4	1	UPSTREAM CG42675 INTRON CG42675	TF binding site mE1_TFBS_cad
3R	23287353	3R_23287353_SNP [dm3] 3R_27461631_SNP [dm6]	T	C	3.486e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10625700	2R_10625700_SNP [dm3] 2R_14738195_SNP [dm6]	A	T	3.488e^-4	1	EXON CR43428
2R	15065771	2R_15065771_SNP [dm3] 2R_19178266_SNP [dm6]	G	T	3.490e^-4	1	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6263960	3L_6263960_SNP [dm3] 3L_6270860_SNP [dm6]	C	G	3.496e^-4	1	INTERGENIC
2L	1043768	2L_1043768_SNP [dm3] 2L_1043768_SNP [dm6]	A	T	3.505e^-4	1	UPSTREAM IA-2 INTRON IA-2
2R	11259080	2R_11259080_SNP [dm3] 2R_15371575_SNP [dm6]	C	T	3.505e^-4	1	UPSTREAM CR44458 & 1 other DOWNSTREAM CR44459 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
2R	15107003	2R_15107003_SNP [dm3] 2R_19219498_SNP [dm6]	G	A	3.514e^-4	1	INTRON hppy
3L	15159893	3L_15159893_SNP [dm3] 3L_15166793_SNP [dm6]	A	G	3.520e^-4	1	INTERGENIC
2R	18854086	2R_18854086_SNP [dm3] 2R_22966563_SNP [dm6]	C	T	3.532e^-4	1	INTERGENIC
3L	10627152	3L_10627152_SNP [dm3] 3L_10634052_SNP [dm6]	C	T	3.539e^-4	1	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	5539949	3L_5539949_SNP [dm3] 3L_5546849_SNP [dm6]	C	T	3.556e^-4	1	INTRON CG10625
3R	14642343	3R_14642343_SNP [dm3] 3R_18816621_SNP [dm6]	C	T	3.578e^-4	1	INTRON CG18208
3R	25250082	3R_25250082_SNP [dm3] 3R_29424360_SNP [dm6]	A	T	3.612e^-4	1	INTRON Ptp99A
2R	15671970	2R_15671970_SNP [dm3] 2R_19784465_SNP [dm6]	T	A	3.616e^-4	1	UPSTREAM Obp56g EXON CR45231	regulatory region REDfly_CRMs
3R	14191589	3R_14191589_DEL [dm3] 3R_18365867_DEL [dm6]	CA	C	3.633e^-4	1	UPSTREAM Nup43 INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
2L	3407190	2L_3407190_SNP [dm3] 2L_3407190_SNP [dm6]	T	A	3.636e^-4	1	INTRON pgant2
2R	14926496	2R_14926496_SNP [dm3] 2R_19038991_SNP [dm6]	G	A	3.636e^-4	1	INTERGENIC
3L	14965043	3L_14965043_SNP [dm3] 3L_14971943_SNP [dm6]	T	C	3.645e^-4	1	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	7963447	2R_7963447_SNP [dm3] 2R_12075942_SNP [dm6]	G	A	3.653e^-4	1	INTRON CG8888
2L	16378287	2L_16378287_SNP [dm3] 2L_16378287_SNP [dm6]	A	T	3.662e^-4	1	INTERGENIC
2L	2878640	2L_2878640_SNP [dm3] 2L_2878640_SNP [dm6]	A	T	3.668e^-4	1	SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	6664651	X_6664651_SNP [dm3] X_6770618_SNP [dm6]	G	T	3.673e^-4	1	UTR_3_PRIME CG14438 UPSTREAM COQ7 DOWNSTREAM shf & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	13114197	2R_13114197_SNP [dm3] 2R_17226692_SNP [dm6]	C	T	3.679e^-4	1	INTRON mbl
3R	15036615	3R_15036615_SNP [dm3] 3R_19210893_SNP [dm6]	T	C	3.681e^-4	1	INTERGENIC
3L	1291026	3L_1291026_SNP [dm3] 3L_1291026_SNP [dm6]	C	T	3.682e^-4	1	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4157085	2L_4157085_SNP [dm3] 2L_4157085_SNP [dm6]	C	G	3.683e^-4	1	INTERGENIC
X	18401990	X_18401990_SNP [dm3] X_18507957_SNP [dm6]	T	G	3.684e^-4	1	NON_SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7954428	2L_7954428_SNP [dm3] 2L_7954428_SNP [dm6]	T	G	3.688e^-4	1	INTRON Snoo
3L	15745374	3L_15745374_SNP [dm3] 3L_15752274_SNP [dm6]	C	T	3.689e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12970290	2R_12970290_SNP [dm3] 2R_17082785_SNP [dm6]	A	G	3.692e^-4	1	INTRON CG30460
X	6665391	X_6665391_SNP [dm3] X_6771358_SNP [dm6]	T	A	3.696e^-4	1	UTR_5_PRIME COQ7 DOWNSTREAM shf & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	12930982	3R_12930982_SNP [dm3] 3R_17105260_SNP [dm6]	C	A	3.699e^-4	1	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7818526	3L_7818526_SNP [dm3] 3L_7825426_SNP [dm6]	A	T	3.701e^-4	1	INTRON Pdp1
3R	2855547	3R_2855547_SNP [dm3] 3R_7029825_SNP [dm6]	T	G	3.703e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15917931	3L_15917931_DEL [dm3] 3L_15924831_DEL [dm6]	GG	G	3.708e^-4	1	UTR_5_PRIME sff DOWNSTREAM Pka-C3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7426897	2R_7426897_SNP [dm3] 2R_11539392_SNP [dm6]	A	G	3.717e^-4	1	INTERGENIC
3R	14641404	3R_14641404_SNP [dm3] 3R_18815682_SNP [dm6]	A	T	3.722e^-4	1	INTRON CG18208
3L	790451	3L_790451_SNP [dm3] 3L_790451_SNP [dm6]	T	C	3.724e^-4	1	INTERGENIC
2R	6714999	2R_6714999_SNP [dm3] 2R_10827494_SNP [dm6]	G	T	3.727e^-4	1	UTR_3_PRIME CG12325 & 1 other
3L	9543654	3L_9543654_SNP [dm3] 3L_9550554_SNP [dm6]	A	G	3.727e^-4	1	INTRON CG42673
X	16168590	X_16168590_INS [dm3] X_16274557_INS [dm6]	T	TTAGTATTAA	3.736e^-4	1	SPLICE_SITE_REGION kat80 DOWNSTREAM Mfe2 INTRON kat80
2L	6489319	2L_6489319_SNP [dm3] 2L_6489319_SNP [dm6]	G	A	3.743e^-4	1	SYNONYMOUS_CODING epsilonCOP UPSTREAM KFase DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9580907	3R_9580907_SNP [dm3] 3R_13755185_SNP [dm6]	T	A	3.752e^-4	1	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18176834	3L_18176834_SNP [dm3] 3L_18183734_SNP [dm6]	C	T	3.752e^-4	1	INTRON W
3L	18193476	3L_18193476_SNP [dm3] 3L_18200376_SNP [dm6]	G	A	3.759e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11339302	3L_11339302_SNP [dm3] 3L_11346202_SNP [dm6]	A	T	3.768e^-4	1	INTERGENIC
3L	3241867	3L_3241867_SNP [dm3] 3L_3241867_SNP [dm6]	A	G	3.770e^-4	1	INTERGENIC
X	2870976	X_2870976_SNP [dm3] X_2976943_SNP [dm6]	C	A	3.777e^-4	1	INTRON kirre
3L	1290595	3L_1290595_SNP [dm3] 3L_1290595_SNP [dm6]	T	G	3.780e^-4	1	NON_SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18782395	3L_18782395_SNP [dm3] 3L_18789295_SNP [dm6]	A	T	3.785e^-4	1	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	19421717	2L_19421717_SNP [dm3] 2L_19421717_SNP [dm6]	C	T	3.788e^-4	1	INTRON Pax
2R	15954070	2R_15954070_SNP [dm3] 2R_20066565_SNP [dm6]	A	T	3.801e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	8911481	2R_8911481_SNP [dm3] 2R_13023976_SNP [dm6]	C	G	3.802e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10017266	2R_10017266_SNP [dm3] 2R_14129761_SNP [dm6]	C	A	3.813e^-4	1	INTRON Prosap
3L	6458456	3L_6458456_SNP [dm3] 3L_6465356_SNP [dm6]	G	A	3.825e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17164336	2L_17164336_SNP [dm3] 2L_17164336_SNP [dm6]	G	A	3.834e^-4	1	INTRON beat-IIIa & 1 other
X	4288433	X_4288433_SNP [dm3] X_4394400_SNP [dm6]	G	A	3.838e^-4	1	UPSTREAM CR32773 INTRON CR32773
2L	4157086	2L_4157086_SNP [dm3] 2L_4157086_SNP [dm6]	A	T	3.851e^-4	1	INTERGENIC
2L	4733899	2L_4733899_SNP [dm3] 2L_4733899_SNP [dm6]	C	G	3.865e^-4	1	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2L	1977118	2L_1977118_SNP [dm3] 2L_1977118_SNP [dm6]	C	T	3.897e^-4	1	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6696213	2L_6696213_SNP [dm3] 2L_6696213_SNP [dm6]	T	G	3.900e^-4	1	INTRON Tsp
3R	1776038	3R_1776038_SNP [dm3] 3R_5950316_SNP [dm6]	C	T	3.900e^-4	1	INTRON CG34113
3L	6594653	3L_6594653_SNP [dm3] 3L_6601553_SNP [dm6]	C	A	3.906e^-4	1	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18163959	3L_18163959_SNP [dm3] 3L_18170859_SNP [dm6]	C	T	3.910e^-4	1	INTRON W
X	1327633	X_1327633_SNP [dm3] X_1433600_SNP [dm6]	G	C	3.912e^-4	1	SYNONYMOUS_CODING futsch	TF binding site mE1_TFBS_chinmo
3L	2726322	3L_2726322_SNP [dm3] 3L_2726322_SNP [dm6]	A	G	3.920e^-4	1	INTRON Mrtf
2R	1865038	2R_1865038_SNP [dm3] 2R_5977533_SNP [dm6]	C	A	3.921e^-4	1	INTRON mle
2L	16149937	2L_16149937_SNP [dm3] 2L_16149937_SNP [dm6]	G	A	3.929e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20681411	2R_20681411_SNP [dm3] 2R_24793888_SNP [dm6]	G	T	3.933e^-4	1	UPSTREAM Reg-5 DOWNSTREAM ETH EXON CR43257	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11283357	2R_11283357_SNP [dm3] 2R_15395852_SNP [dm6]	C	T	3.939e^-4	1	INTERGENIC
X	16681730	X_16681730_SNP [dm3] X_16787697_SNP [dm6]	C	A	3.940e^-4	1	START_GAINED Sap30 UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19896168	2R_19896168_INS [dm3] 2R_24008645_INS [dm6]	A	ACATA	3.941e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad
3L	8583491	3L_8583491_SNP [dm3] 3L_8590391_SNP [dm6]	G	A	3.942e^-4	1	UTR_5_PRIME CG43078 INTRON CG43078
3R	23285079	3R_23285079_SNP [dm3] 3R_27459357_SNP [dm6]	A	T	3.943e^-4	1	INTERGENIC
3R	14651251	3R_14651251_SNP [dm3] 3R_18825529_SNP [dm6]	T	A	3.966e^-4	1	INTRON CG18208
3L	5572772	3L_5572772_SNP [dm3] 3L_5579672_SNP [dm6]	G	T	3.966e^-4	1	INTERGENIC
2R	7881276	2R_7881276_SNP [dm3] 2R_11993771_SNP [dm6]	C	T	3.973e^-4	1	EXON CR45319
2L	17582486	2L_17582486_DEL [dm3] 2L_17582486_DEL [dm6]	ATGGCAT	G	3.992e^-4	1	INTERGENIC
2L	17583093	2L_17583093_SNP [dm3] 2L_17583093_SNP [dm6]	G	A	3.992e^-4	1	UPSTREAM CR45111 INTERGENIC
3R	18170933	3R_18170933_SNP [dm3] 3R_22345211_SNP [dm6]	T	C	3.992e^-4	1	INTERGENIC
3R	22162848	3R_22162848_SNP [dm3] 3R_26337126_SNP [dm6]	A	T	3.993e^-4	1	INTRON CG33970
3L	7197142	3L_7197142_SNP [dm3] 3L_7204042_SNP [dm6]	C	A	3.995e^-4	1	INTERGENIC
3R	26126911	3R_26126911_SNP [dm3] 3R_30301189_SNP [dm6]	A	G	4.000e^-4	1	INTRON hdc
3L	8039358	3L_8039358_SNP [dm3] 3L_8046258_SNP [dm6]	T	C	4.001e^-4	1	INTRON nmo
3L	9552906	3L_9552906_SNP [dm3] 3L_9559806_SNP [dm6]	G	A	4.001e^-4	1	INTRON CG42673
3L	18782385	3L_18782385_MNP [dm3] 3L_18789285_MNP [dm6]	TTCA	ACAC	4.008e^-4	1	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2R	7563440	2R_7563440_SNP [dm3] 2R_11675935_SNP [dm6]	C	T	4.010e^-4	1	UTR_5_PRIME Tret1-2 INTRON Roc2
3R	13893851	3R_13893851_INS [dm3] 3R_18068129_INS [dm6]	A	AA	4.020e^-4	1	INTERGENIC
X	14262921	X_14262921_SNP [dm3] X_14368888_SNP [dm6]	A	C	4.026e^-4	1	INTRON dpr8
2R	15917101	2R_15917101_SNP [dm3] 2R_20029596_SNP [dm6]	T	C	4.044e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	14571771	2R_14571771_SNP [dm3] 2R_18684266_SNP [dm6]	A	G	4.056e^-4	1	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
2R	8515645	2R_8515645_SNP [dm3] 2R_12628140_SNP [dm6]	T	G	4.057e^-4	1	DOWNSTREAM muskelin INTRON CG17760
3R	4665226	3R_4665226_SNP [dm3] 3R_8839504_SNP [dm6]	G	T	4.059e^-4	1	SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2L	18719968	2L_18719968_SNP [dm3] 2L_18719968_SNP [dm6]	G	C	4.062e^-4	1	INTRON CG10348
2L	13863885	2L_13863885_SNP [dm3] 2L_13863885_SNP [dm6]	A	G	4.071e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9196687	3L_9196687_DEL [dm3] 3L_9203587_DEL [dm6]	AGT	A	4.071e^-4	1	INTRON Slc45-1
3L	15178860	3L_15178860_SNP [dm3] 3L_15185760_SNP [dm6]	A	C	4.076e^-4	1	INTERGENIC
2R	6342117	2R_6342117_SNP [dm3] 2R_10454612_SNP [dm6]	A	G	4.084e^-4	1	INTRON Galphao & 1 other
3L	6600209	3L_6600209_SNP [dm3] 3L_6607109_SNP [dm6]	T	C	4.087e^-4	1	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14645815	3L_14645815_SNP [dm3] 3L_14652715_SNP [dm6]	A	G	4.088e^-4	1	INTRON dlp
3L	8585759	3L_8585759_SNP [dm3] 3L_8592659_SNP [dm6]	G	A	4.089e^-4	1	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8585765	3L_8585765_SNP [dm3] 3L_8592665_SNP [dm6]	G	T	4.095e^-4	1	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6590942	3L_6590942_SNP [dm3] 3L_6597842_SNP [dm6]	G	T	4.104e^-4	1	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
2R	9211907	2R_9211907_SNP [dm3] 2R_13324402_SNP [dm6]	C	T	4.105e^-4	1	INTERGENIC
2R	18362969	2R_18362969_SNP [dm3] 2R_22475464_SNP [dm6]	G	T	4.107e^-4	1	NON_SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063	TF binding site mE1_TFBS_chinmo
2R	14393126	2R_14393126_SNP [dm3] 2R_18505621_SNP [dm6]	A	C	4.118e^-4	1	DOWNSTREAM GstE11 INTERGENIC
X	20563554	X_20563554_SNP [dm3] X_20692527_SNP [dm6]	T	C	4.124e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6519671	X_6519671_SNP [dm3] X_6625638_SNP [dm6]	G	A	4.126e^-4	1	INTRON pigs	TF binding site BDTNP1_TFBS_dl
3R	26987971	3R_26987971_DEL [dm3] 3R_31162249_DEL [dm6]	AGTGAAACAGAAACAGAAA...	A	4.135e^-4	1	INTRON Gycbeta100B & 1 other
3L	15159079	3L_15159079_INS [dm3] 3L_15165979_INS [dm6]	A	CT	4.148e^-4	1	INTERGENIC
2L	17155434	2L_17155434_SNP [dm3] 2L_17155434_SNP [dm6]	A	C	4.150e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7267406	2L_7267406_SNP [dm3] 2L_7267406_SNP [dm6]	T	C	4.150e^-4	1	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14450593	3L_14450593_SNP [dm3] 3L_14457493_SNP [dm6]	G	C	4.153e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cad
X	21526697	X_21526697_DEL [dm3] X_21655670_DEL [dm6]	CTCTTTTGCACCTCATTCAA...	C	4.153e^-4	1	INTERGENIC	transposable element FlyBase
2L	6695911	2L_6695911_SNP [dm3] 2L_6695911_SNP [dm6]	G	A	4.159e^-4	1	INTRON Tsp
3R	9698043	3R_9698043_SNP [dm3] 3R_13872321_SNP [dm6]	A	C	4.161e^-4	1	INTRON E5
2R	17282931	2R_17282931_SNP [dm3] 2R_21395426_SNP [dm6]	C	A	4.165e^-4	1	INTRON Sdc
3R	6721502	3R_6721502_SNP [dm3] 3R_10895780_SNP [dm6]	A	T	4.170e^-4	1	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	13814748	3R_13814748_SNP [dm3] 3R_17989026_SNP [dm6]	C	T	4.171e^-4	1	INTRON cpo
3L	17916461	3L_17916461_SNP [dm3] 3L_17923361_SNP [dm6]	A	G	4.174e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1475333	2L_1475333_SNP [dm3] 2L_1475333_SNP [dm6]	G	A	4.179e^-4	1	INTERGENIC
3R	25257640	3R_25257640_SNP [dm3] 3R_29431918_SNP [dm6]	G	C	4.183e^-4	1	INTRON Ptp99A
3L	5913006	3L_5913006_SNP [dm3] 3L_5919906_SNP [dm6]	T	C	4.184e^-4	1	SYNONYMOUS_CODING CG10483 DOWNSTREAM CR45167	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4051214	X_4051214_SNP [dm3] X_4157181_SNP [dm6]	T	G	4.188e^-4	1	INTRON Fas2
3L	6314485	3L_6314485_SNP [dm3] 3L_6321385_SNP [dm6]	T	C	4.205e^-4	1	SYNONYMOUS_CODING Or65a
2L	2878631	2L_2878631_SNP [dm3] 2L_2878631_SNP [dm6]	C	T	4.209e^-4	1	SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	6664500	X_6664500_SNP [dm3] X_6770467_SNP [dm6]	C	T	4.212e^-4	1	UTR_3_PRIME CG14438 UPSTREAM COQ7 DOWNSTREAM shf	TF binding site BDTNP1_TFBS_dl
2L	1475349	2L_1475349_SNP [dm3] 2L_1475349_SNP [dm6]	T	A	4.213e^-4	1	INTERGENIC
X	8476577	X_8476577_SNP [dm3] X_8582544_SNP [dm6]	T	C	4.214e^-4	1	INTRON CG12065
3R	26088765	3R_26088765_DEL [dm3] 3R_30263043_DEL [dm6]	TT	T	4.226e^-4	1	INTERGENIC
2L	6696296	2L_6696296_SNP [dm3] 2L_6696296_SNP [dm6]	C	T	4.227e^-4	1	INTRON Tsp
3L	11850183	3L_11850183_SNP [dm3] 3L_11857083_SNP [dm6]	C	G	4.231e^-4	1	INTRON CG44837
3R	10661158	3R_10661158_SNP [dm3] 3R_14835436_SNP [dm6]	T	G	4.241e^-4	1	INTRON btsz
3L	6358572	3L_6358572_SNP [dm3] 3L_6365472_SNP [dm6]	C	A	4.242e^-4	1	INTERGENIC
3L	10289928	3L_10289928_SNP [dm3] 3L_10296828_SNP [dm6]	A	T	4.259e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15334466	3R_15334466_SNP [dm3] 3R_19508744_SNP [dm6]	G	T	4.262e^-4	1	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14926514	2R_14926514_SNP [dm3] 2R_19039009_SNP [dm6]	G	A	4.271e^-4	1	INTERGENIC
2R	17214307	2R_17214307_SNP [dm3] 2R_21326802_SNP [dm6]	A	T	4.287e^-4	1	UPSTREAM snoRNA:Psi28S-3316b & 1 other INTRON dom EXON snoRNA:Psi28S-3316a
2L	10796283	2L_10796283_SNP [dm3] 2L_10796283_SNP [dm6]	G	C	4.296e^-4	1	INTRON CG31869
3L	11024051	3L_11024051_SNP [dm3] 3L_11030951_SNP [dm6]	T	G	4.299e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1734185	3R_1734185_SNP [dm3] 3R_5908463_SNP [dm6]	T	G	4.300e^-4	1	INTRON CG34113
2L	19329573	2L_19329573_SNP [dm3] 2L_19329573_SNP [dm6]	A	C	4.319e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15218399	3L_15218399_SNP [dm3] 3L_15225299_SNP [dm6]	A	G	4.325e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	7808881	2L_7808881_SNP [dm3] 2L_7808881_SNP [dm6]	C	T	4.329e^-4	1	INTRON cdc14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13509984	2R_13509984_SNP [dm3] 2R_17622479_SNP [dm6]	G	A	4.332e^-4	1	INTRON CG10936
2R	14962721	2R_14962721_SNP [dm3] 2R_19075216_SNP [dm6]	C	T	4.349e^-4	1	INTRON 5-HT1A
2L	1751039	2L_1751039_SNP [dm3] 2L_1751039_SNP [dm6]	A	G	4.350e^-4	1	SYNONYMOUS_CODING CG17712 DOWNSTREAM CG17646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	5356479	2L_5356479_SNP [dm3] 2L_5356479_SNP [dm6]	T	A	4.350e^-4	1	INTRON nompC	TF binding site mE1_TFBS_cad
3L	18176853	3L_18176853_SNP [dm3] 3L_18183753_SNP [dm6]	T	A	4.351e^-4	1	INTRON W
3R	10171130	3R_10171130_INS [dm3] 3R_14345408_INS [dm6]	C	CC	4.354e^-4	1	INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5356549	2L_5356549_SNP [dm3] 2L_5356549_SNP [dm6]	T	G	4.355e^-4	1	INTRON nompC	TF binding site mE1_TFBS_cad
2R	7800860	2R_7800860_SNP [dm3] 2R_11913355_SNP [dm6]	T	A	4.361e^-4	1	UPSTREAM CG13183 INTERGENIC
2R	18596057	2R_18596057_SNP [dm3] 2R_22708552_SNP [dm6]	A	T	4.369e^-4	1	UPSTREAM CR43735 DOWNSTREAM Obp58d INTRON CG30275
2R	11259298	2R_11259298_SNP [dm3] 2R_15371793_SNP [dm6]	G	A	4.369e^-4	1	UPSTREAM Pms2 DOWNSTREAM CR44459 EXON CR44458	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	4.373e^-4	1	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13908070	3L_13908070_SNP [dm3] 3L_13914970_SNP [dm6]	A	G	4.385e^-4	1	INTRON Rgl
2R	7529524	2R_7529524_DEL [dm3] 2R_11642019_DEL [dm6]	AGGG	A	4.389e^-4	1	UTR_3_PRIME CG9003 DOWNSTREAM CG9003
3R	26805769	3R_26805769_SNP [dm3] 3R_30980047_SNP [dm6]	A	G	4.397e^-4	1	INTRON 5-HT7
2L	17501305	2L_17501305_SNP [dm3] 2L_17501305_SNP [dm6]	C	G	4.406e^-4	1	UPSTREAM Dhc36C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20702693	2R_20702693_SNP [dm3] 2R_24815170_SNP [dm6]	A	G	4.407e^-4	1	UTR_5_PRIME Dll	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7563488	2R_7563488_SNP [dm3] 2R_11675983_SNP [dm6]	A	G	4.430e^-4	1	UTR_5_PRIME Tret1-2 INTRON Roc2
2L	7235280	2L_7235280_SNP [dm3] 2L_7235280_SNP [dm6]	G	T	4.435e^-4	1	INTRON Ndae1
3R	13973034	3R_13973034_SNP [dm3] 3R_18147312_SNP [dm6]	C	T	4.441e^-4	1	INTERGENIC
X	12822647	X_12822647_SNP [dm3] X_12928614_SNP [dm6]	T	G	4.447e^-4	1	INTRON fne
2R	7563377	2R_7563377_SNP [dm3] 2R_11675872_SNP [dm6]	T	A	4.447e^-4	1	UPSTREAM Tret1-2 INTRON Roc2
X	6665055	X_6665055_SNP [dm3] X_6771022_SNP [dm6]	C	T	4.451e^-4	1	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2L	17501235	2L_17501235_SNP [dm3] 2L_17501235_SNP [dm6]	G	T	4.452e^-4	1	UPSTREAM Dhc36C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14191602	3R_14191602_SNP [dm3] 3R_18365880_SNP [dm6]	A	T	4.452e^-4	1	UPSTREAM Nup43 INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
X	8476571	X_8476571_SNP [dm3] X_8582538_SNP [dm6]	A	G	4.452e^-4	1	INTRON CG12065
3R	6721525	3R_6721525_SNP [dm3] 3R_10895803_SNP [dm6]	A	G	4.456e^-4	1	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	5186875	3L_5186875_SNP [dm3] 3L_5193775_SNP [dm6]	T	A	4.461e^-4	1	INTRON shep
2R	13114196	2R_13114196_SNP [dm3] 2R_17226691_SNP [dm6]	A	C	4.463e^-4	1	INTRON mbl
3L	15151868	3L_15151868_SNP [dm3] 3L_15158768_SNP [dm6]	A	T	4.464e^-4	1	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	12675636	3L_12675636_SNP [dm3] 3L_12682536_SNP [dm6]	C	G	4.470e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5310745	2L_5310745_SNP [dm3] 2L_5310745_SNP [dm6]	A	T	4.473e^-4	1	UTR_3_PRIME vri DOWNSTREAM CG14024 & 1 other
3L	18786311	3L_18786311_SNP [dm3] 3L_18793211_SNP [dm6]	G	A	4.474e^-4	1	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18084292	3L_18084292_SNP [dm3] 3L_18091192_SNP [dm6]	A	C	4.480e^-4	1	INTRON CG13698
3L	17523186	3L_17523186_SNP [dm3] 3L_17530086_SNP [dm6]	G	A	4.481e^-4	1	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18323015	2R_18323015_SNP [dm3] 2R_22435510_SNP [dm6]	C	A	4.494e^-4	1	INTERGENIC
3R	25452749	3R_25452749_SNP [dm3] 3R_29627027_SNP [dm6]	A	C	4.495e^-4	1	INTERGENIC
2L	17521446	2L_17521446_SNP [dm3] 2L_17521446_SNP [dm6]	T	G	4.500e^-4	1	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2L	7681964	2L_7681964_SNP [dm3] 2L_7681964_SNP [dm6]	G	A	4.504e^-4	1	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9336936	2L_9336936_INS [dm3] 2L_9336936_INS [dm6]	A	AT	4.504e^-4	1	UPSTREAM Eaat1 INTRON Eaat1
2R	7626540	2R_7626540_SNP [dm3] 2R_11739035_SNP [dm6]	T	G	4.506e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4660364	2R_4660364_SNP [dm3] 2R_8772859_SNP [dm6]	G	C	4.509e^-4	1	INTERGENIC
3L	7612094	3L_7612094_SNP [dm3] 3L_7618994_SNP [dm6]	C	T	4.513e^-4	1	INTRON CG33275
3L	3393606	3L_3393606_SNP [dm3] 3L_3393606_SNP [dm6]	G	A	4.522e^-4	1	UPSTREAM CR45737 INTERGENIC
3L	9806613	3L_9806613_SNP [dm3] 3L_9813513_SNP [dm6]	G	T	4.527e^-4	1	UPSTREAM CG43897 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	14183407	3R_14183407_SNP [dm3] 3R_18357685_SNP [dm6]	C	T	4.531e^-4	1	INTRON CG15803
2R	2764832	2R_2764832_SNP [dm3] 2R_6877327_SNP [dm6]	T	C	4.538e^-4	1	SYNONYMOUS_CODING Spn42Da INTRON CR44169
X	6520152	X_6520152_SNP [dm3] X_6626119_SNP [dm6]	T	C	4.543e^-4	1	INTRON pigs
2L	17155370	2L_17155370_SNP [dm3] 2L_17155370_SNP [dm6]	T	G	4.545e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
2R	20555600	2R_20555600_SNP [dm3] 2R_24668077_SNP [dm6]	C	T	4.560e^-4	1	SYNONYMOUS_CODING CG4806 DOWNSTREAM CG33228	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	18434876	3L_18434876_SNP [dm3] 3L_18441776_SNP [dm6]	T	A	4.572e^-4	1	EXON CR43280
3L	6515111	3L_6515111_SNP [dm3] 3L_6522011_SNP [dm6]	G	A	4.577e^-4	1	INTRON sfl
2L	19469264	2L_19469264_INS [dm3] 2L_19469264_INS [dm6]	C	TTCAT	4.591e^-4	1	DOWNSTREAM CR45723 EXON CR45722
3L	11115451	3L_11115451_SNP [dm3] 3L_11122351_SNP [dm6]	A	G	4.601e^-4	1	NON_SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	15077246	X_15077246_SNP [dm3] X_15183213_SNP [dm6]	G	A	4.606e^-4	1	INTRON CG43737
2L	4871725	2L_4871725_SNP [dm3] 2L_4871725_SNP [dm6]	T	C	4.613e^-4	1	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	15979506	2R_15979506_DEL [dm3] 2R_20092001_DEL [dm6]	TACAT	T	4.622e^-4	1	DOWNSTREAM CR44633 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12822464	X_12822464_SNP [dm3] X_12928431_SNP [dm6]	G	A	4.624e^-4	1	INTRON fne
X	9855466	X_9855466_SNP [dm3] X_9961433_SNP [dm6]	C	A	4.625e^-4	1	INTERGENIC
3L	18153071	3L_18153071_SNP [dm3] 3L_18159971_SNP [dm6]	C	T	4.636e^-4	1	UTR_5_PRIME CG13699
3R	12366529	3R_12366529_SNP [dm3] 3R_16540807_SNP [dm6]	C	T	4.671e^-4	1	INTRON CG42342
3R	19500249	3R_19500249_SNP [dm3] 3R_23674527_SNP [dm6]	T	C	4.674e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	18489131	X_18489131_SNP [dm3] X_18595098_SNP [dm6]	C	T	4.676e^-4	1	INTERGENIC
X	12209102	X_12209102_DEL [dm3] X_12315069_DEL [dm6]	CTCAC	G	4.678e^-4	1	INTRON Ten-a
3R	24929129	3R_24929129_SNP [dm3] 3R_29103407_SNP [dm6]	G	A	4.681e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17155442	2L_17155442_SNP [dm3] 2L_17155442_SNP [dm6]	C	T	4.691e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10162455	3R_10162455_SNP [dm3] 3R_14336733_SNP [dm6]	T	C	4.703e^-4	1	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	25742689	3R_25742689_SNP [dm3] 3R_29916967_SNP [dm6]	G	A	4.713e^-4	1	SYNONYMOUS_CODING trp UTR_3_PRIME trp
3L	18378586	3L_18378586_SNP [dm3] 3L_18385486_SNP [dm6]	T	C	4.713e^-4	1	INTERGENIC
3R	4168820	3R_4168820_SNP [dm3] 3R_8343098_SNP [dm6]	G	C	4.716e^-4	1	SYNONYMOUS_CODING CG9601 UPSTREAM CG18193	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17563609	2L_17563609_SNP [dm3] 2L_17563609_SNP [dm6]	T	C	4.721e^-4	1	INTERGENIC
3R	25286581	3R_25286581_SNP [dm3] 3R_29460859_SNP [dm6]	T	A	4.732e^-4	1	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	9706112	2L_9706112_SNP [dm3] 2L_9706112_SNP [dm6]	G	T	4.742e^-4	1	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	12127387	2R_12127387_SNP [dm3] 2R_16239882_SNP [dm6]	A	G	4.746e^-4	1	NON_SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5519142	2L_5519142_SNP [dm3] 2L_5519142_SNP [dm6]	T	C	4.748e^-4	1	SYNONYMOUS_CODING CG7382 UPSTREAM cl DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11041805	3L_11041805_SNP [dm3] 3L_11048705_SNP [dm6]	T	C	4.750e^-4	1	INTRON CG43693
2L	4168569	2L_4168569_SNP [dm3] 2L_4168569_SNP [dm6]	G	A	4.764e^-4	1	INTERGENIC
3R	13560350	3R_13560350_SNP [dm3] 3R_17734628_SNP [dm6]	T	C	4.773e^-4	1	DOWNSTREAM CG14321 INTERGENIC
3R	18903496	3R_18903496_SNP [dm3] 3R_23077774_SNP [dm6]	G	A	4.780e^-4	1	INTRON CG13830
2L	18478123	2L_18478123_SNP [dm3] 2L_18478123_SNP [dm6]	A	G	4.782e^-4	1	INTRON CG10283
X	18824077	X_18824077_SNP [dm3] X_18930044_SNP [dm6]	T	A	4.783e^-4	1	UPSTREAM CG43759 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16013445	3L_16013445_DEL [dm3] 3L_16020345_DEL [dm6]	TT	T	4.787e^-4	1	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21946604	3R_21946604_SNP [dm3] 3R_26120882_SNP [dm6]	A	C	4.791e^-4	1	INTRON CG31324
2L	1996122	2L_1996122_SNP [dm3] 2L_1996122_SNP [dm6]	G	A	4.803e^-4	1	DOWNSTREAM CG33543 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9086276	2R_9086276_SNP [dm3] 2R_13198771_SNP [dm6]	A	T	4.811e^-4	1	UPSTREAM Aats-val & 1 other INTERGENIC
2L	18524725	2L_18524725_SNP [dm3] 2L_18524725_SNP [dm6]	T	C	4.812e^-4	1	UPSTREAM CR44903 INTRON CG10211	TF binding site mE1_TFBS_inv
3L	10972556	3L_10972556_SNP [dm3] 3L_10979456_SNP [dm6]	A	C	4.813e^-4	1	INTERGENIC
3R	20802663	3R_20802663_SNP [dm3] 3R_24976941_SNP [dm6]	G	C	4.817e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2718763	2L_2718763_SNP [dm3] 2L_2718763_SNP [dm6]	C	T	4.820e^-4	1	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3R	18909413	3R_18909413_SNP [dm3] 3R_23083691_SNP [dm6]	T	C	4.825e^-4	1	INTRON CG13830	TF binding site mE1_TFBS_chinmo
X	5482252	X_5482252_SNP [dm3] X_5588219_SNP [dm6]	T	C	4.845e^-4	1	INTERGENIC
X	19206708	X_19206708_SNP [dm3] X_19312675_SNP [dm6]	C	A	4.849e^-4	1	NON_SYNONYMOUS_CODING out	TF binding site mE1_TFBS_cad
2L	1867049	2L_1867049_SNP [dm3] 2L_1867049_SNP [dm6]	T	A	4.851e^-4	1	SYNONYMOUS_CODING CG31663	TF binding site mE1_TFBS_HSA
3L	9247662	3L_9247662_SNP [dm3] 3L_9254562_SNP [dm6]	C	G	4.854e^-4	1	INTRON GluRIB
3L	12443112	3L_12443112_SNP [dm3] 3L_12450012_SNP [dm6]	T	G	4.855e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3812629	X_3812629_SNP [dm3] X_3918596_SNP [dm6]	T	C	4.866e^-4	1	INTRON CG42541
3R	19738173	3R_19738173_SNP [dm3] 3R_23912451_SNP [dm6]	T	G	4.872e^-4	1	INTRON sba
3L	6264230	3L_6264230_DEL [dm3] 3L_6271130_DEL [dm6]	GG	G	4.883e^-4	1	INTERGENIC
X	2626383	X_2626383_SNP [dm3] X_2732350_SNP [dm6]	A	T	4.893e^-4	1	UPSTREAM CG2712 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1268809	3L_1268809_SNP [dm3] 3L_1268809_SNP [dm6]	A	G	4.896e^-4	1	INTRON CG9134
X	4287655	X_4287655_INS [dm3] X_4393622_INS [dm6]	A	AT	4.901e^-4	1	INTRON CR32773
2L	17563623	2L_17563623_SNP [dm3] 2L_17563623_SNP [dm6]	A	T	4.908e^-4	1	INTERGENIC
2R	15460931	2R_15460931_DEL [dm3] 2R_19573426_DEL [dm6]	GTGTGTGG	G	4.913e^-4	1	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5830063	X_5830063_SNP [dm3] X_5936030_SNP [dm6]	C	T	4.941e^-4	1	INTRON CG3726
3R	10169984	3R_10169984_SNP [dm3] 3R_14344262_SNP [dm6]	T	C	4.945e^-4	1	SYNONYMOUS_CODING NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8476584	X_8476584_SNP [dm3] X_8582551_SNP [dm6]	G	A	4.946e^-4	1	INTRON CG12065
2L	17519114	2L_17519114_SNP [dm3] 2L_17519114_SNP [dm6]	G	A	4.950e^-4	1	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_sens
2R	11058632	2R_11058632_SNP [dm3] 2R_15171127_SNP [dm6]	C	T	4.959e^-4	1	INTRON igl
2R	9214355	2R_9214355_SNP [dm3] 2R_13326850_SNP [dm6]	G	A	4.963e^-4	1	INTERGENIC
3L	6264367	3L_6264367_SNP [dm3] 3L_6271267_SNP [dm6]	T	C	4.981e^-4	1	INTERGENIC
3L	4410601	3L_4410601_SNP [dm3] 3L_4410601_SNP [dm6]	T	C	4.987e^-4	1	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	15278137	X_15278137_SNP [dm3] X_15384104_SNP [dm6]	G	A	4.993e^-4	1	UTR_5_PRIME CG9164 UPSTREAM CG9164 INTRON CG9164
3L	5890807	3L_5890807_SNP [dm3] 3L_5897707_SNP [dm6]	C	A	4.996e^-4	1	SYNONYMOUS_CODING CG5592 UPSTREAM Pole2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22327492	3L_22327492_SNP [dm3] 3L_22334392_SNP [dm6]	T	A	4.999e^-4	1	INTRON Ten-m
3L	4049741	3L_4049741_SNP [dm3] 3L_4049741_SNP [dm6]	G	C	5.002e^-4	1	INTRON CG1136	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	17984534	2R_17984534_SNP [dm3] 2R_22097029_SNP [dm6]	G	A	5.025e^-4	1	INTRON CG11073
2R	11300834	2R_11300834_SNP [dm3] 2R_15413329_SNP [dm6]	A	G	5.028e^-4	1	INTRON CG43729
3R	23453489	3R_23453489_SNP [dm3] 3R_27627767_SNP [dm6]	C	A	5.031e^-4	1	INTRON Tusp
2R	20573392	2R_20573392_SNP [dm3] 2R_24685869_SNP [dm6]	G	A	5.034e^-4	1	UPSTREAM Mmp1 INTRON Mmp1	TF binding site mE1_TFBS_cad
3R	8610071	3R_8610071_SNP [dm3] 3R_12784349_SNP [dm6]	G	A	5.042e^-4	1	INTERGENIC
2L	19378759	2L_19378759_SNP [dm3] 2L_19378759_SNP [dm6]	G	A	5.046e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13967219	3R_13967219_SNP [dm3] 3R_18141497_SNP [dm6]	A	T	5.050e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12980522	2L_12980522_SNP [dm3] 2L_12980522_SNP [dm6]	A	C	5.052e^-4	1	SYNONYMOUS_CODING Vha68-3	TF binding site mE1_TFBS_chinmo
X	13063957	X_13063957_SNP [dm3] X_13169924_SNP [dm6]	T	A	5.057e^-4	1	INTRON CG34411
3R	9684685	3R_9684685_SNP [dm3] 3R_13858963_SNP [dm6]	G	C	5.062e^-4	1	INTERGENIC
2R	14205753	2R_14205753_SNP [dm3] 2R_18318248_SNP [dm6]	G	A	5.063e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	27479066	3R_27479066_SNP [dm3] 3R_31653344_SNP [dm6]	T	C	5.066e^-4	1	INTRON kek6	TF binding site mE1_TFBS_cad
2L	17521499	2L_17521499_SNP [dm3] 2L_17521499_SNP [dm6]	T	G	5.067e^-4	1	NON_SYNONYMOUS_CODING CG15143 INTRON Dhc36C
3R	14449333	3R_14449333_SNP [dm3] 3R_18623611_SNP [dm6]	C	A	5.071e^-4	1	INTRON qin
X	20534392	X_20534392_SNP [dm3] X_20663365_SNP [dm6]	C	A	5.072e^-4	1	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17520653	3L_17520653_SNP [dm3] 3L_17527553_SNP [dm6]	C	T	5.075e^-4	1	SYNONYMOUS_CODING Edc3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	2107325	2R_2107325_INS [dm3] 2R_6219820_INS [dm6]	C	CCGACC	5.090e^-4	1	INTRON bin3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18823775	X_18823775_INS [dm3] X_18929742_INS [dm6]	G	TTACA	5.093e^-4	1	UPSTREAM CG43759 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16549941	2R_16549941_SNP [dm3] 2R_20662436_SNP [dm6]	G	A	5.095e^-4	1	UTR_3_PRIME CG13437 DOWNSTREAM Fem-1	TF binding site mE1_TFBS_cad
2L	5371191	2L_5371191_SNP [dm3] 2L_5371191_SNP [dm6]	T	A	5.095e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5371222	2L_5371222_SNP [dm3] 2L_5371222_SNP [dm6]	G	A	5.095e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11259094	2R_11259094_SNP [dm3] 2R_15371589_SNP [dm6]	C	T	5.101e^-4	1	UPSTREAM CR44458 & 1 other DOWNSTREAM CR44459 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
3L	3591699	3L_3591699_SNP [dm3] 3L_3591699_SNP [dm6]	A	G	5.112e^-4	1	INTRON Eip63E
3L	18176845	3L_18176845_SNP [dm3] 3L_18183745_SNP [dm6]	T	C	5.117e^-4	1	INTRON W
2L	17521500	2L_17521500_SNP [dm3] 2L_17521500_SNP [dm6]	C	G	5.119e^-4	1	NON_SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2R	5255470	2R_5255470_SNP [dm3] 2R_9367965_SNP [dm6]	T	A	5.120e^-4	1	INTRON CG13954	TF binding site BDTNP1_TFBS_da
X	12164923	X_12164923_SNP [dm3] X_12270890_SNP [dm6]	G	T	5.121e^-4	1	INTRON Ten-a
2L	18684791	2L_18684791_SNP [dm3] 2L_18684791_SNP [dm6]	C	A	5.122e^-4	1	UTR_3_PRIME msl-1 DOWNSTREAM msl-1
2L	9703501	2L_9703501_SNP [dm3] 2L_9703501_SNP [dm6]	C	A	5.125e^-4	1	SYNONYMOUS_CODING CG31710 INTRON pelo
2L	16149931	2L_16149931_SNP [dm3] 2L_16149931_SNP [dm6]	G	A	5.129e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19536067	2R_19536067_SNP [dm3] 2R_23648544_SNP [dm6]	G	T	5.129e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl
2R	19469680	2R_19469680_SNP [dm3] 2R_23582157_SNP [dm6]	C	T	5.132e^-4	1	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	22159875	2L_22159875_SNP [dm3] 2L_22159875_SNP [dm6]	G	C	5.132e^-4	1	UTR_3_PRIME CG42748 DOWNSTREAM CG42748 INTRON CG42748
2L	6697641	2L_6697641_SNP [dm3] 2L_6697641_SNP [dm6]	C	T	5.137e^-4	1	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14192641	2R_14192641_SNP [dm3] 2R_18305136_SNP [dm6]	C	T	5.140e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	20602548	3L_20602548_DEL [dm3] 3L_20609448_DEL [dm6]	AA	A	5.147e^-4	1	INTRON knrl
3R	14641320	3R_14641320_SNP [dm3] 3R_18815598_SNP [dm6]	A	T	5.155e^-4	1	INTRON CG18208
2R	7027986	2R_7027986_SNP [dm3] 2R_11140481_SNP [dm6]	T	A	5.156e^-4	1	INTRON CG13229
2L	10815371	2L_10815371_SNP [dm3] 2L_10815371_SNP [dm6]	G	A	5.157e^-4	1	INTRON Nos
3L	4410596	3L_4410596_SNP [dm3] 3L_4410596_SNP [dm6]	T	A	5.160e^-4	1	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	11232111	3L_11232111_INS [dm3] 3L_11239011_INS [dm6]	T	TC	5.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6264301	3L_6264301_SNP [dm3] 3L_6271201_SNP [dm6]	T	G	5.162e^-4	1	INTERGENIC
3L	6264330	3L_6264330_INS [dm3] 3L_6271230_INS [dm6]	T	TTT	5.162e^-4	1	INTERGENIC
3L	6264346	3L_6264346_SNP [dm3] 3L_6271246_SNP [dm6]	T	G	5.162e^-4	1	INTERGENIC
3L	6264378	3L_6264378_SNP [dm3] 3L_6271278_SNP [dm6]	A	T	5.162e^-4	1	INTERGENIC
3L	6264519	3L_6264519_SNP [dm3] 3L_6271419_SNP [dm6]	T	C	5.162e^-4	1	INTERGENIC
3L	3741042	3L_3741042_SNP [dm3] 3L_3741042_SNP [dm6]	A	G	5.182e^-4	1	INTRON CG32264
3L	15705670	3L_15705670_SNP [dm3] 3L_15712570_SNP [dm6]	A	C	5.185e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	22185778	3R_22185778_SNP [dm3] 3R_26360056_SNP [dm6]	C	T	5.202e^-4	1	INTRON CG33970
X	3817448	X_3817448_SNP [dm3] X_3923415_SNP [dm6]	A	T	5.258e^-4	1	INTRON CG42541
3L	4410589	3L_4410589_SNP [dm3] 3L_4410589_SNP [dm6]	T	G	5.259e^-4	1	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	7087716	3L_7087716_SNP [dm3] 3L_7094616_SNP [dm6]	T	G	5.275e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	18836793	3L_18836793_SNP [dm3] 3L_18843693_SNP [dm6]	A	C	5.276e^-4	1	DOWNSTREAM CR32027 INTRON Indy
3R	18620906	3R_18620906_MNP [dm3] 3R_22795184_MNP [dm6]	TTT	AAG	5.277e^-4	1	INTERGENIC
3L	7087640	3L_7087640_SNP [dm3] 3L_7094540_SNP [dm6]	A	T	5.281e^-4	1	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	15152490	3L_15152490_SNP [dm3] 3L_15159390_SNP [dm6]	G	A	5.293e^-4	1	SYNONYMOUS_CODING Prp31 UPSTREAM Msh6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5371213	2L_5371213_SNP [dm3] 2L_5371213_SNP [dm6]	T	G	5.298e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17678496	3R_17678496_SNP [dm3] 3R_21852774_SNP [dm6]	G	T	5.301e^-4	1	INTRON glec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	15179398	3L_15179398_SNP [dm3] 3L_15186298_SNP [dm6]	T	C	5.307e^-4	1	INTERGENIC
2L	17606500	2L_17606500_SNP [dm3] 2L_17606500_SNP [dm6]	C	A	5.321e^-4	1	EXON CR44412
X	8513316	X_8513316_SNP [dm3] X_8619283_SNP [dm6]	T	A	5.321e^-4	1	INTERGENIC
2R	12127393	2R_12127393_SNP [dm3] 2R_16239888_SNP [dm6]	C	T	5.324e^-4	1	NON_SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8528217	2R_8528217_DEL [dm3] 2R_12640712_DEL [dm6]	TTA	T	5.327e^-4	1	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
2R	7857991	2R_7857991_INS [dm3] 2R_11970486_INS [dm6]	G	AGAAATGCTTTGGTAACA...	5.330e^-4	1	UPSTREAM CG8290 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	7235188	3L_7235188_SNP [dm3] 3L_7242088_SNP [dm6]	C	T	5.346e^-4	1	SYNONYMOUS_CODING Neos UPSTREAM RpL18 DOWNSTREAM mRpL50	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12482312	3L_12482312_SNP [dm3] 3L_12489212_SNP [dm6]	T	C	5.349e^-4	1	INTRON CG10660
2R	2764654	2R_2764654_SNP [dm3] 2R_6877149_SNP [dm6]	G	C	5.350e^-4	1	INTRON Spn42Da & 1 other
3L	20226666	3L_20226666_DEL [dm3] 3L_20233566_DEL [dm6]	ATATATA	A	5.362e^-4	1	UTR_3_PRIME CG17233 DOWNSTREAM CG13813
2L	5502182	2L_5502182_SNP [dm3] 2L_5502182_SNP [dm6]	G	A	5.365e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15031775	3R_15031775_SNP [dm3] 3R_19206053_SNP [dm6]	G	C	5.374e^-4	1	INTERGENIC
3L	7303862	3L_7303862_SNP [dm3] 3L_7310762_SNP [dm6]	G	T	5.377e^-4	1	INTRON unc-13-4A
3L	16013444	3L_16013444_SNP [dm3] 3L_16020344_SNP [dm6]	A	G	5.379e^-4	1	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9690261	3R_9690261_SNP [dm3] 3R_13864539_SNP [dm6]	A	T	5.388e^-4	1	INTERGENIC
2R	16020949	2R_16020949_SNP [dm3] 2R_20133444_SNP [dm6]	G	A	5.394e^-4	1	INTERGENIC
2L	7270403	2L_7270403_DEL [dm3] 2L_7270403_DEL [dm6]	AA	A	5.396e^-4	1	INTRON Wnt4
3L	18378605	3L_18378605_SNP [dm3] 3L_18385505_SNP [dm6]	G	A	5.399e^-4	1	INTERGENIC
3L	1448732	3L_1448732_SNP [dm3] 3L_1448732_SNP [dm6]	T	A	5.401e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
X	8119222	X_8119222_SNP [dm3] X_8225189_SNP [dm6]	T	C	5.406e^-4	1	SYNONYMOUS_CODING sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7222156	2L_7222156_SNP [dm3] 2L_7222156_SNP [dm6]	C	T	5.409e^-4	1	SYNONYMOUS_CODING ico	TF binding site mE1_TFBS_sens
2L	7222195	2L_7222195_SNP [dm3] 2L_7222195_SNP [dm6]	C	G	5.409e^-4	1	SYNONYMOUS_CODING ico	TF binding site mE1_TFBS_sens
3R	12573695	3R_12573695_DEL [dm3] 3R_16747973_DEL [dm6]	CTTTGATTGC	C	5.411e^-4	1	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8354098	X_8354098_SNP [dm3] X_8460065_SNP [dm6]	G	A	5.420e^-4	1	INTRON CG15347	transposable element FlyBase
2R	16021015	2R_16021015_SNP [dm3] 2R_20133510_SNP [dm6]	C	T	5.432e^-4	1	INTERGENIC
2L	6681620	2L_6681620_SNP [dm3] 2L_6681620_SNP [dm6]	C	T	5.439e^-4	1	SYNONYMOUS_CODING Nhe3	TF binding site mE1_TFBS_inv
2L	16078839	2L_16078839_SNP [dm3] 2L_16078839_SNP [dm6]	T	C	5.452e^-4	1	INTRON beat-Ia
2L	19694354	2L_19694354_SNP [dm3] 2L_19694354_SNP [dm6]	A	C	5.453e^-4	1	INTRON Lar
3R	18170754	3R_18170754_SNP [dm3] 3R_22345032_SNP [dm6]	C	T	5.466e^-4	1	INTERGENIC
X	12822417	X_12822417_SNP [dm3] X_12928384_SNP [dm6]	C	A	5.466e^-4	1	INTRON fne
2R	18861473	2R_18861473_SNP [dm3] 2R_22973950_SNP [dm6]	G	A	5.467e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7808865	2L_7808865_SNP [dm3] 2L_7808865_SNP [dm6]	G	A	5.490e^-4	1	INTRON cdc14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10765227	2R_10765227_SNP [dm3] 2R_14877722_SNP [dm6]	G	A	5.491e^-4	1	UPSTREAM Cyp6a19 DOWNSTREAM Cyp6a23 INTERGENIC
2L	6488397	2L_6488397_SNP [dm3] 2L_6488397_SNP [dm6]	C	T	5.492e^-4	1	UPSTREAM epsilonCOP DOWNSTREAM DLP INTRON KFase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	19378740	2L_19378740_SNP [dm3] 2L_19378740_SNP [dm6]	G	A	5.501e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7856085	2R_7856085_SNP [dm3] 2R_11968580_SNP [dm6]	A	C	5.507e^-4	1	UTR_5_PRIME PI31 INTRON PI31
3L	693062	3L_693062_SNP [dm3] 3L_693062_SNP [dm6]	T	A	5.514e^-4	1	UPSTREAM Vti1 DOWNSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15348143	2R_15348143_SNP [dm3] 2R_19460638_SNP [dm6]	G	C	5.519e^-4	1	INTRON par-1
2L	3408503	2L_3408503_SNP [dm3] 2L_3408503_SNP [dm6]	G	C	5.535e^-4	1	INTRON pgant2
2R	8528799	2R_8528799_SNP [dm3] 2R_12641294_SNP [dm6]	C	A	5.555e^-4	1	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3945500	2L_3945500_SNP [dm3] 2L_3945500_SNP [dm6]	G	C	5.556e^-4	1	INTRON fred
3L	2613444	3L_2613444_SNP [dm3] 3L_2613444_SNP [dm6]	T	C	5.568e^-4	1	INTRON Pxn
X	12354736	X_12354736_SNP [dm3] X_12460703_SNP [dm6]	T	A	5.568e^-4	1	INTRON Rab40
X	5830085	X_5830085_SNP [dm3] X_5936052_SNP [dm6]	C	T	5.569e^-4	1	INTRON CG3726
X	12776395	X_12776395_SNP [dm3] X_12882362_SNP [dm6]	C	T	5.580e^-4	1	INTRON Pde9
3R	26402758	3R_26402758_SNP [dm3] 3R_30577036_SNP [dm6]	A	T	5.581e^-4	1	DOWNSTREAM tmod INTRON tmod
2R	15328784	2R_15328784_SNP [dm3] 2R_19441279_SNP [dm6]	C	T	5.584e^-4	1	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
3R	14642266	3R_14642266_SNP [dm3] 3R_18816544_SNP [dm6]	T	C	5.585e^-4	1	INTRON CG18208
3L	14316478	3L_14316478_SNP [dm3] 3L_14323378_SNP [dm6]	T	A	5.590e^-4	1	INTRON fz & 1 other
3R	23656456	3R_23656456_SNP [dm3] 3R_27830734_SNP [dm6]	A	G	5.593e^-4	1	INTRON CG34353
2R	20553891	2R_20553891_SNP [dm3] 2R_24666368_SNP [dm6]	T	A	5.621e^-4	1	SYNONYMOUS_CODING CG4806 UPSTREAM CG34214 DOWNSTREAM NDUFA8	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5557452	3L_5557452_SNP [dm3] 3L_5564352_SNP [dm6]	G	A	5.635e^-4	1	NON_SYNONYMOUS_CODING Sras UPSTREAM Sucb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12238962	2L_12238962_SNP [dm3] 2L_12238962_SNP [dm6]	C	A	5.643e^-4	1	INTRON aret
3R	6725111	3R_6725111_SNP [dm3] 3R_10899389_SNP [dm6]	C	T	5.644e^-4	1	UPSTREAM CR45578 INTERGENIC
3L	12448612	3L_12448612_SNP [dm3] 3L_12455512_SNP [dm6]	T	A	5.646e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6264332	3L_6264332_SNP [dm3] 3L_6271232_SNP [dm6]	C	T	5.646e^-4	1	INTERGENIC
2R	7117254	2R_7117254_SNP [dm3] 2R_11229749_SNP [dm6]	C	T	5.670e^-4	1	SYNONYMOUS_CODING metro	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12631300	3L_12631300_SNP [dm3] 3L_12638200_SNP [dm6]	G	A	5.680e^-4	1	INTRON CR32111
3L	1278467	3L_1278467_SNP [dm3] 3L_1278467_SNP [dm6]	T	C	5.682e^-4	1	INTRON CG32333
3L	16013432	3L_16013432_SNP [dm3] 3L_16020332_SNP [dm6]	G	C	5.682e^-4	1	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13915143	2R_13915143_SNP [dm3] 2R_18027638_SNP [dm6]	A	G	5.682e^-4	1	INTERGENIC
3R	26993037	3R_26993037_SNP [dm3] 3R_31167315_SNP [dm6]	A	G	5.688e^-4	1	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_inv
2L	12330237	2L_12330237_SNP [dm3] 2L_12330237_SNP [dm6]	G	T	5.694e^-4	1	INTERGENIC
X	18224083	X_18224083_SNP [dm3] X_18330050_SNP [dm6]	T	A	5.697e^-4	1	INTRON CG6123
3R	25158885	3R_25158885_SNP [dm3] 3R_29333163_SNP [dm6]	C	A	5.704e^-4	1	INTERGENIC
3R	3743720	3R_3743720_SNP [dm3] 3R_7917998_SNP [dm6]	G	A	5.711e^-4	1	NON_SYNONYMOUS_CODING CG10445
2L	7761314	2L_7761314_SNP [dm3] 2L_7761314_SNP [dm6]	A	T	5.712e^-4	1	INTRON CG7196
3L	16876369	3L_16876369_SNP [dm3] 3L_16883269_SNP [dm6]	C	T	5.713e^-4	1	INTRON Lmpt
2L	5317930	2L_5317930_SNP [dm3] 2L_5317930_SNP [dm6]	A	C	5.717e^-4	1	SPLICE_SITE_REGION Ncoa6 INTRON Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3243175	3R_3243175_SNP [dm3] 3R_7417453_SNP [dm6]	T	A	5.730e^-4	1	INTERGENIC
3L	10960220	3L_10960220_SNP [dm3] 3L_10967120_SNP [dm6]	A	T	5.752e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA
2L	17610004	2L_17610004_SNP [dm3] 2L_17610004_SNP [dm6]	C	T	5.755e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17419790	2L_17419790_SNP [dm3] 2L_17419790_SNP [dm6]	C	T	5.760e^-4	1	INTRON Dif
3L	16712513	3L_16712513_SNP [dm3] 3L_16719413_SNP [dm6]	C	T	5.761e^-4	1	NON_SYNONYMOUS_CODING Dab
2R	14642660	2R_14642660_SNP [dm3] 2R_18755155_SNP [dm6]	G	C	5.762e^-4	1	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Hs3st-A
X	12822421	X_12822421_SNP [dm3] X_12928388_SNP [dm6]	T	A	5.762e^-4	1	INTRON fne
3R	3770614	3R_3770614_SNP [dm3] 3R_7944892_SNP [dm6]	T	A	5.765e^-4	1	INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11041674	3L_11041674_SNP [dm3] 3L_11048574_SNP [dm6]	T	C	5.766e^-4	1	INTRON CG43693	TF binding site mE1_TFBS_sens mE1_TFBS_zfh1
3L	3822924	3L_3822924_SNP [dm3] 3L_3822924_SNP [dm6]	T	C	5.772e^-4	1	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15466714	2R_15466714_SNP [dm3] 2R_19579209_SNP [dm6]	T	A	5.781e^-4	1	INTRON sm
3R	8609509	3R_8609509_SNP [dm3] 3R_12783787_SNP [dm6]	C	A	5.781e^-4	1	UPSTREAM beat-Vc INTERGENIC
3L	11336322	3L_11336322_SNP [dm3] 3L_11343222_SNP [dm6]	T	A	5.795e^-4	1	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	18544780	3L_18544780_SNP [dm3] 3L_18551680_SNP [dm6]	T	G	5.796e^-4	1	INTERGENIC
3L	12482224	3L_12482224_SNP [dm3] 3L_12489124_SNP [dm6]	A	G	5.810e^-4	1	INTRON CG10660
2L	3812493	2L_3812493_SNP [dm3] 2L_3812493_SNP [dm6]	G	A	5.842e^-4	1	SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15269166	X_15269166_SNP [dm3] X_15375133_SNP [dm6]	A	C	5.855e^-4	1	INTRON acj6
3R	9903673	3R_9903673_SNP [dm3] 3R_14077951_SNP [dm6]	A	T	5.855e^-4	1	INTRON foxo
3L	9943027	3L_9943027_SNP [dm3] 3L_9949927_SNP [dm6]	C	T	5.866e^-4	1	INTRON CG34356
X	4745609	X_4745609_SNP [dm3] X_4851576_SNP [dm6]	C	A	5.877e^-4	1	INTRON CG42594
3R	6380614	3R_6380614_SNP [dm3] 3R_10554892_SNP [dm6]	C	G	5.886e^-4	1	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	15269192	X_15269192_SNP [dm3] X_15375159_SNP [dm6]	T	C	5.893e^-4	1	INTRON acj6
3R	6199966	3R_6199966_SNP [dm3] 3R_10374244_SNP [dm6]	T	A	5.896e^-4	1	INTRON Rfx
3L	7197096	3L_7197096_SNP [dm3] 3L_7203996_SNP [dm6]	A	G	5.899e^-4	1	INTERGENIC
2L	18094243	2L_18094243_SNP [dm3] 2L_18094243_SNP [dm6]	A	G	5.905e^-4	1	INTERGENIC
3L	11847833	3L_11847833_SNP [dm3] 3L_11854733_SNP [dm6]	G	T	5.914e^-4	1	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15862462	3L_15862462_SNP [dm3] 3L_15869362_SNP [dm6]	A	G	5.919e^-4	1	INTRON pHCl
X	16443494	X_16443494_SNP [dm3] X_16549461_SNP [dm6]	T	A	5.931e^-4	1	INTRON Arp2
X	4286368	X_4286368_SNP [dm3] X_4392335_SNP [dm6]	G	T	5.934e^-4	1	INTRON CR32773
2R	11058699	2R_11058699_SNP [dm3] 2R_15171194_SNP [dm6]	C	G	5.938e^-4	1	INTRON igl
X	19361533	X_19361533_SNP [dm3] X_19467500_SNP [dm6]	G	T	5.942e^-4	1	INTRON kek5
2L	6489087	2L_6489087_SNP [dm3] 2L_6489087_SNP [dm6]	T	C	5.949e^-4	1	UPSTREAM epsilonCOP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6704025	2L_6704025_SNP [dm3] 2L_6704025_SNP [dm6]	C	A	5.954e^-4	1	INTRON Tsp
X	4740549	X_4740549_SNP [dm3] X_4846516_SNP [dm6]	G	A	5.955e^-4	1	INTRON CG42594
3R	16294506	3R_16294506_SNP [dm3] 3R_20468784_SNP [dm6]	T	A	5.957e^-4	1	INTRON Gfrl
3L	3241840	3L_3241840_SNP [dm3] 3L_3241840_SNP [dm6]	A	T	5.958e^-4	1	INTERGENIC
2L	6697513	2L_6697513_SNP [dm3] 2L_6697513_SNP [dm6]	G	A	5.958e^-4	1	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16234733	X_16234733_SNP [dm3] X_16340700_SNP [dm6]	C	G	5.961e^-4	1	DOWNSTREAM Dsp1 INTERGENIC
3L	2209207	3L_2209207_SNP [dm3] 3L_2209207_SNP [dm6]	A	T	5.972e^-4	1	INTERGENIC
3R	17006236	3R_17006236_SNP [dm3] 3R_21180514_SNP [dm6]	T	A	5.987e^-4	1	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17155376	2L_17155376_SNP [dm3] 2L_17155376_SNP [dm6]	T	A	5.995e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
2R	11999689	2R_11999689_SNP [dm3] 2R_16112184_SNP [dm6]	A	G	5.998e^-4	1	INTRON Asph
3L	11221111	3L_11221111_DEL [dm3] 3L_11228011_DEL [dm6]	AA	A	6.006e^-4	1	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6665727	X_6665727_DEL [dm3] X_6771694_DEL [dm6]	CCATCCTGATCACC...	C	6.028e^-4	1	DOWNSTREAM CG14438 INTRON COQ7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14938989	3R_14938989_SNP [dm3] 3R_19113267_SNP [dm6]	C	A	6.037e^-4	1	INTRON CG6040
3L	7925042	3L_7925042_SNP [dm3] 3L_7931942_SNP [dm6]	C	A	6.038e^-4	1	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21102077	3R_21102077_SNP [dm3] 3R_25276355_SNP [dm6]	C	T	6.046e^-4	1	SYNONYMOUS_CODING CG10513	TF binding site mE1_TFBS_cad
X	6664983	X_6664983_DEL [dm3] X_6770950_DEL [dm6]	TC	T	6.048e^-4	1	UPSTREAM COQ7 DOWNSTREAM shf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	3710152	X_3710152_SNP [dm3] X_3816119_SNP [dm6]	C	G	6.049e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_twi
2L	5637059	2L_5637059_SNP [dm3] 2L_5637059_SNP [dm6]	A	G	6.050e^-4	1	INTRON CG31646
3L	14445221	3L_14445221_SNP [dm3] 3L_14452121_SNP [dm6]	A	T	6.054e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24930187	3R_24930187_SNP [dm3] 3R_29104465_SNP [dm6]	T	A	6.060e^-4	1	INTRON CG11873	TF binding site mE1_TFBS_cad
X	4286992	X_4286992_SNP [dm3] X_4392959_SNP [dm6]	C	G	6.063e^-4	1	INTRON CR32773
3L	12245941	3L_12245941_SNP [dm3] 3L_12252841_SNP [dm6]	A	T	6.064e^-4	1	INTRON app
2L	3487601	2L_3487601_SNP [dm3] 2L_3487601_SNP [dm6]	A	T	6.084e^-4	1	INTRON CG15414
3R	27076524	3R_27076524_SNP [dm3] 3R_31250802_SNP [dm6]	G	A	6.086e^-4	1	INTRON qless	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12180762	2L_12180762_SNP [dm3] 2L_12180762_SNP [dm6]	C	A	6.090e^-4	1	INTRON aret
3L	11220916	3L_11220916_SNP [dm3] 3L_11227816_SNP [dm6]	A	T	6.090e^-4	1	UTR_3_PRIME CG42671 INTRON CG42671
3L	16989879	3L_16989879_SNP [dm3] 3L_16996779_SNP [dm6]	T	G	6.105e^-4	1	NON_SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8745953	3L_8745953_SNP [dm3] 3L_8752853_SNP [dm6]	C	T	6.110e^-4	1	UPSTREAM Fhos INTERGENIC
2L	6742403	2L_6742403_SNP [dm3] 2L_6742403_SNP [dm6]	C	A	6.122e^-4	1	UPSTREAM CG11221 INTERGENIC
2L	16149233	2L_16149233_SNP [dm3] 2L_16149233_SNP [dm6]	G	C	6.129e^-4	1	INTERGENIC
3R	19050265	3R_19050265_SNP [dm3] 3R_23224543_SNP [dm6]	A	C	6.160e^-4	1	INTRON cnc
3L	7896453	3L_7896453_SNP [dm3] 3L_7903353_SNP [dm6]	C	T	6.172e^-4	1	UTR_5_PRIME pbl INTRON pbl
2L	17576549	2L_17576549_SNP [dm3] 2L_17576549_SNP [dm6]	A	G	6.176e^-4	1	INTERGENIC
3L	3364113	3L_3364113_SNP [dm3] 3L_3364113_SNP [dm6]	C	T	6.196e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	1018331	3L_1018331_SNP [dm3] 3L_1018331_SNP [dm6]	G	A	6.198e^-4	1	INTRON trio
X	3466042	X_3466042_SNP [dm3] X_3572009_SNP [dm6]	T	C	6.205e^-4	1	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8
3R	12734663	3R_12734663_SNP [dm3] 3R_16908941_SNP [dm6]	C	G	6.206e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2L	6090275	2L_6090275_SNP [dm3] 2L_6090275_SNP [dm6]	C	A	6.221e^-4	1	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	11170738	2R_11170738_SNP [dm3] 2R_15283233_SNP [dm6]	T	A	6.223e^-4	1	INTRON Trpm
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	6.227e^-4	1	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10815402	2L_10815402_SNP [dm3] 2L_10815402_SNP [dm6]	T	C	6.249e^-4	1	INTRON Nos
3R	6662430	3R_6662430_SNP [dm3] 3R_10836708_SNP [dm6]	G	C	6.271e^-4	1	INTRON Cad86C
3L	7488900	3L_7488900_SNP [dm3] 3L_7495800_SNP [dm6]	T	A	6.278e^-4	1	INTRON Cyp4d8
X	15077327	X_15077327_SNP [dm3] X_15183294_SNP [dm6]	C	G	6.279e^-4	1	INTRON CG43737
3L	12184141	3L_12184141_SNP [dm3] 3L_12191041_SNP [dm6]	T	C	6.296e^-4	1	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_sens
3L	4200471	3L_4200471_SNP [dm3] 3L_4200471_SNP [dm6]	G	A	6.298e^-4	1	SYNONYMOUS_CODING CG43367 DOWNSTREAM CG15005
3L	15917112	3L_15917112_SNP [dm3] 3L_15924012_SNP [dm6]	T	G	6.303e^-4	1	INTRON sff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2805332	X_2805332_SNP [dm3] X_2911299_SNP [dm6]	T	C	6.305e^-4	1	INTRON kirre
X	8355978	X_8355978_SNP [dm3] X_8461945_SNP [dm6]	T	A	6.307e^-4	1	INTRON Es2	TF binding site mE1_TFBS_cad mE1_TFBS_sens

By genomic position
Variant impact
Gene name

LocRatio_Butanedione phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results