DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.341e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.9056	0.0883
In_3R_P	5.6217	0.0602

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2417 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	14156205	2R_14156205_SNP [dm3] 2R_18268700_SNP [dm6]	T	G	6.803e^-7	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156202	2R_14156202_SNP [dm3] 2R_18268697_SNP [dm6]	A	T	6.813e^-7	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156201	2R_14156201_SNP [dm3] 2R_18268696_SNP [dm6]	C	T	8.333e^-7	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19424533	2L_19424533_SNP [dm3] 2L_19424533_SNP [dm6]	G	A	1.032e^-6	0.328	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
2R	14156207	2R_14156207_INS [dm3] 2R_18268702_INS [dm6]	T	GTTCA	1.072e^-6	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1679041	3L_1679041_SNP [dm3] 3L_1679041_SNP [dm6]	C	T	1.202e^-6	0.328	INTRON CG7991
2R	14156204	2R_14156204_SNP [dm3] 2R_18268699_SNP [dm6]	A	T	1.223e^-6	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7205084	3L_7205084_SNP [dm3] 3L_7211984_SNP [dm6]	G	A	2.562e^-6	0.578	INTERGENIC
2R	14156193	2R_14156193_SNP [dm3] 2R_18268688_SNP [dm6]	T	G	3.342e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15757288	3L_15757288_SNP [dm3] 3L_15764188_SNP [dm6]	T	C	3.453e^-6	0.578	INTERGENIC
2R	14156160	2R_14156160_SNP [dm3] 2R_18268655_SNP [dm6]	G	T	3.917e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156280	2R_14156280_SNP [dm3] 2R_18268775_SNP [dm6]	T	C	3.993e^-6	0.578	INTERGENIC
2R	14156245	2R_14156245_SNP [dm3] 2R_18268740_SNP [dm6]	T	A	4.367e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156212	2R_14156212_SNP [dm3] 2R_18268707_SNP [dm6]	G	A	4.452e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15756404	3L_15756404_SNP [dm3] 3L_15763304_SNP [dm6]	T	G	4.626e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19424388	2L_19424388_SNP [dm3] 2L_19424388_SNP [dm6]	G	C	5.309e^-6	0.62	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13456999	X_13456999_SNP [dm3] X_13562966_SNP [dm6]	T	C	6.206e^-6	0.62	UTR_3_PRIME CG32633 UPSTREAM Tango13 DOWNSTREAM CG32633	TF binding site mE1_TFBS_zfh1
2R	14156218	2R_14156218_SNP [dm3] 2R_18268713_SNP [dm6]	A	T	6.866e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156223	2R_14156223_DEL [dm3] 2R_18268718_DEL [dm6]	AT	A	6.866e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17858734	2L_17858734_SNP [dm3] 2L_17858734_SNP [dm6]	T	C	7.146e^-6	0.62	INTRON CadN2
X	9592398	X_9592398_DEL [dm3] X_9698365_DEL [dm6]	GA	G	7.945e^-6	0.62	DOWNSTREAM btd INTERGENIC
3L	7500741	3L_7500741_SNP [dm3] 3L_7507641_SNP [dm6]	T	C	8.503e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9766823	3R_9766823_SNP [dm3] 3R_13941101_SNP [dm6]	A	C	9.365e^-6	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	14156182	2R_14156182_SNP [dm3] 2R_18268677_SNP [dm6]	T	C	9.445e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9639202	3L_9639202_SNP [dm3] 3L_9646102_SNP [dm6]	T	A	1.000e^-5	0.62	INTRON fry & 1 other
3L	13623864	3L_13623864_SNP [dm3] 3L_13630764_SNP [dm6]	C	T	1.008e^-5	0.62	INTRON bru-3
3R	11030691	3R_11030691_DEL [dm3] 3R_15204969_DEL [dm6]	AGAATTGTTGTAAACAATCA...	T	1.031e^-5	0.62	INTRON Spn88Ea
2L	16740554	2L_16740554_INS [dm3] 2L_16740554_INS [dm6]	T	TT	1.081e^-5	0.62	INTRON ChLD3
3R	24797399	3R_24797399_SNP [dm3] 3R_28971677_SNP [dm6]	A	C	1.088e^-5	0.62	EXON CR45669
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	1.112e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	6579051	3L_6579051_SNP [dm3] 3L_6585951_SNP [dm6]	G	T	1.117e^-5	0.62	INTRON CG18769 & 1 other
2R	14955367	2R_14955367_SNP [dm3] 2R_19067862_SNP [dm6]	A	C	1.166e^-5	0.62	INTRON 5-HT1A
2L	19430366	2L_19430366_SNP [dm3] 2L_19430366_SNP [dm6]	G	A	1.209e^-5	0.62	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14156282	2R_14156282_SNP [dm3] 2R_18268777_SNP [dm6]	A	C	1.245e^-5	0.62	INTERGENIC
3L	14398211	3L_14398211_SNP [dm3] 3L_14405111_SNP [dm6]	C	T	1.325e^-5	0.62	NON_SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11030744	3R_11030744_SNP [dm3] 3R_15205022_SNP [dm6]	G	C	1.328e^-5	0.62	INTRON Spn88Ea
2R	14955652	2R_14955652_SNP [dm3] 2R_19068147_SNP [dm6]	A	T	1.350e^-5	0.62	INTRON 5-HT1A
3L	6918567	3L_6918567_SNP [dm3] 3L_6925467_SNP [dm6]	A	G	1.410e^-5	0.62	INTERGENIC
3R	23884213	3R_23884213_SNP [dm3] 3R_28058491_SNP [dm6]	T	G	1.420e^-5	0.62	INTRON CG34362
3R	17544014	3R_17544014_SNP [dm3] 3R_21718292_SNP [dm6]	T	C	1.446e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	11649652	3R_11649652_SNP [dm3] 3R_15823930_SNP [dm6]	A	C	1.533e^-5	0.62	UTR_3_PRIME alpha-Man-IIb & 1 other DOWNSTREAM rec
2R	14156185	2R_14156185_SNP [dm3] 2R_18268680_SNP [dm6]	A	G	1.614e^-5	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14955642	2R_14955642_SNP [dm3] 2R_19068137_SNP [dm6]	T	A	1.657e^-5	0.62	INTRON 5-HT1A
2R	14955624	2R_14955624_SNP [dm3] 2R_19068119_SNP [dm6]	T	C	1.660e^-5	0.62	INTRON 5-HT1A
2L	4370379	2L_4370379_SNP [dm3] 2L_4370379_SNP [dm6]	G	A	1.693e^-5	0.62	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14955656	2R_14955656_SNP [dm3] 2R_19068151_SNP [dm6]	A	T	1.703e^-5	0.62	INTRON 5-HT1A
2L	5008719	2L_5008719_SNP [dm3] 2L_5008719_SNP [dm6]	A	G	1.713e^-5	0.62	SYNONYMOUS_CODING Rtnl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	15002427	2R_15002427_SNP [dm3] 2R_19114922_SNP [dm6]	T	C	1.794e^-5	0.62	INTRON 5-HT1A
3L	20123085	3L_20123085_SNP [dm3] 3L_20129985_SNP [dm6]	T	C	1.824e^-5	0.62	SYNONYMOUS_CODING gig DOWNSTREAM obst-J	TF binding site BDTNP1_TFBS_twi
X	19299442	X_19299442_SNP [dm3] X_19405409_SNP [dm6]	A	G	1.827e^-5	0.62	INTRON kek5
3R	4477060	3R_4477060_SNP [dm3] 3R_8651338_SNP [dm6]	C	T	1.848e^-5	0.62	SYNONYMOUS_CODING CG8021 UPSTREAM Mkk4 DOWNSTREAM Dhod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	1.849e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	11523381	3L_11523381_DEL [dm3] 3L_11530281_DEL [dm6]	AA	A	1.859e^-5	0.62	INTRON Mob2
2R	14955621	2R_14955621_INS [dm3] 2R_19068116_INS [dm6]	A	AAAACATGCAGAGCTAATCA...	1.865e^-5	0.62	INTRON 5-HT1A
3L	11523433	3L_11523433_SNP [dm3] 3L_11530333_SNP [dm6]	C	T	1.881e^-5	0.62	INTRON Mob2
2L	19430526	2L_19430526_SNP [dm3] 2L_19430526_SNP [dm6]	T	A	1.900e^-5	0.62	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	10556553	3L_10556553_SNP [dm3] 3L_10563453_SNP [dm6]	T	A	1.942e^-5	0.62	INTRON A2bp1
3L	15421165	3L_15421165_SNP [dm3] 3L_15428065_SNP [dm6]	T	C	2.029e^-5	0.62	INTERGENIC
3L	16883811	3L_16883811_DEL [dm3] 3L_16890711_DEL [dm6]	ATGTA	A	2.080e^-5	0.62	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9224913	2L_9224913_SNP [dm3] 2L_9224913_SNP [dm6]	A	G	2.108e^-5	0.62	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	967865	3L_967865_SNP [dm3] 3L_967865_SNP [dm6]	C	T	2.177e^-5	0.62	INTRON Glut1
3R	11647499	3R_11647499_SNP [dm3] 3R_15821777_SNP [dm6]	T	A	2.191e^-5	0.62	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad
3R	26960433	3R_26960433_DEL [dm3] 3R_31134711_DEL [dm6]	TT	T	2.203e^-5	0.62	INTRON Gycbeta100B
2L	14768240	2L_14768240_SNP [dm3] 2L_14768240_SNP [dm6]	A	T	2.226e^-5	0.62	INTERGENIC
X	7244155	X_7244155_SNP [dm3] X_7350122_SNP [dm6]	T	C	2.340e^-5	0.62	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19329678	3R_19329678_SNP [dm3] 3R_23503956_SNP [dm6]	G	A	2.368e^-5	0.62	INTERGENIC
2R	8612806	2R_8612806_SNP [dm3] 2R_12725301_SNP [dm6]	C	T	2.386e^-5	0.62	INTRON CG42663
3R	22615296	3R_22615296_SNP [dm3] 3R_26789574_SNP [dm6]	C	T	2.393e^-5	0.62	INTERGENIC
3L	17297619	3L_17297619_SNP [dm3] 3L_17304519_SNP [dm6]	C	T	2.395e^-5	0.62	INTERGENIC
3R	17543867	3R_17543867_INS [dm3] 3R_21718145_INS [dm6]	C	CCTCCTAAC	2.400e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	4477063	3R_4477063_SNP [dm3] 3R_8651341_SNP [dm6]	C	G	2.403e^-5	0.62	SYNONYMOUS_CODING CG8021 UPSTREAM Mkk4 DOWNSTREAM Dhod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19416744	2L_19416744_SNP [dm3] 2L_19416744_SNP [dm6]	A	G	2.410e^-5	0.62	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	15372476	2L_15372476_SNP [dm3] 2L_15372476_SNP [dm6]	G	A	2.428e^-5	0.62	INTERGENIC
3L	10740572	3L_10740572_SNP [dm3] 3L_10747472_SNP [dm6]	A	G	2.447e^-5	0.62	INTERGENIC
3R	9070158	3R_9070158_SNP [dm3] 3R_13244436_SNP [dm6]	A	G	2.525e^-5	0.63	INTRON Ace
2R	8612813	2R_8612813_SNP [dm3] 2R_12725308_SNP [dm6]	C	T	2.553e^-5	0.63	INTRON CG42663
3L	18010908	3L_18010908_SNP [dm3] 3L_18017808_SNP [dm6]	A	C	2.623e^-5	0.639	INTRON Eip75B
2R	18059171	2R_18059171_SNP [dm3] 2R_22171666_SNP [dm6]	A	G	2.663e^-5	0.64	SYNONYMOUS_CODING a INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15359747	2L_15359747_SNP [dm3] 2L_15359747_SNP [dm6]	A	G	2.760e^-5	0.651	INTERGENIC
2L	18296450	2L_18296450_SNP [dm3] 2L_18296450_SNP [dm6]	C	T	2.795e^-5	0.651	SYNONYMOUS_CODING CG5790	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	14764504	2L_14764504_SNP [dm3] 2L_14764504_SNP [dm6]	C	A	2.832e^-5	0.651	DOWNSTREAM CSN1a INTERGENIC
X	16138957	X_16138957_SNP [dm3] X_16244924_SNP [dm6]	A	G	2.848e^-5	0.651	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	16155189	X_16155189_SNP [dm3] X_16261156_SNP [dm6]	T	C	2.960e^-5	0.661	INTERGENIC
2L	19422638	2L_19422638_SNP [dm3] 2L_19422638_SNP [dm6]	A	G	2.963e^-5	0.661	INTRON Pax
2L	19377269	2L_19377269_SNP [dm3] 2L_19377269_SNP [dm6]	A	C	3.120e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19430339	2L_19430339_SNP [dm3] 2L_19430339_SNP [dm6]	T	C	3.148e^-5	0.671	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17060913	3R_17060913_SNP [dm3] 3R_21235191_SNP [dm6]	G	A	3.324e^-5	0.671	INTRON e	regulatory region REDfly_CRMs
3L	20130041	3L_20130041_SNP [dm3] 3L_20136941_SNP [dm6]	C	A	3.337e^-5	0.671	NON_SYNONYMOUS_CODING gig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17902066	3L_17902066_SNP [dm3] 3L_17908966_SNP [dm6]	A	G	3.379e^-5	0.671	SYNONYMOUS_CODING CG14353 DOWNSTREAM CG5290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19423821	2L_19423821_SNP [dm3] 2L_19423821_SNP [dm6]	A	C	3.387e^-5	0.671	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	14767866	2L_14767866_SNP [dm3] 2L_14767866_SNP [dm6]	C	G	3.437e^-5	0.671	DOWNSTREAM CG4701 INTERGENIC
3L	9750430	3L_9750430_SNP [dm3] 3L_9757330_SNP [dm6]	G	A	3.524e^-5	0.671	INTRON CG42268
3R	23884212	3R_23884212_SNP [dm3] 3R_28058490_SNP [dm6]	G	T	3.524e^-5	0.671	INTRON CG34362
2R	9309568	2R_9309568_SNP [dm3] 2R_13422063_SNP [dm6]	G	A	3.554e^-5	0.671	DOWNSTREAM CG30060 INTRON CG42321
2R	18600649	2R_18600649_SNP [dm3] 2R_22713144_SNP [dm6]	C	G	3.566e^-5	0.671	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3L	11523502	3L_11523502_SNP [dm3] 3L_11530402_SNP [dm6]	C	T	3.596e^-5	0.671	INTRON Mob2
2L	10801399	2L_10801399_SNP [dm3] 2L_10801399_SNP [dm6]	A	T	3.616e^-5	0.671	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2L	4259673	2L_4259673_SNP [dm3] 2L_4259673_SNP [dm6]	G	A	3.731e^-5	0.671	DOWNSTREAM CR44080 INTERGENIC
3L	18011105	3L_18011105_SNP [dm3] 3L_18018005_SNP [dm6]	T	C	3.753e^-5	0.671	INTRON Eip75B
2L	917252	2L_917252_SNP [dm3] 2L_917252_SNP [dm6]	C	A	3.790e^-5	0.671	SYNONYMOUS_CODING GluRIIC

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.636e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01335
In_3R_Mo	0.03560

Kruskal-Wallis test

Covariate	χ²	p-value
In_2R_NS	8.3575	0.0153
In_3R_K	4.9563	0.0839
In_3R_Mo	4.9394	0.0846

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2101 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12982667	2L_12982667_SNP [dm3] 2L_12982667_SNP [dm6]	G	C	1.027e^-7	0.193	INTERGENIC
3L	6998227	3L_6998227_SNP [dm3] 3L_7005127_SNP [dm6]	C	T	3.664e^-7	0.343	INTRON Mp
2R	15292288	2R_15292288_SNP [dm3] 2R_19404783_SNP [dm6]	C	T	6.347e^-7	0.345	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10663956	3L_10663956_SNP [dm3] 3L_10670856_SNP [dm6]	A	G	7.367e^-7	0.345	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	1069101	2L_1069101_SNP [dm3] 2L_1069101_SNP [dm6]	T	A	1.050e^-6	0.389	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	12468774	3L_12468774_SNP [dm3] 3L_12475674_SNP [dm6]	G	A	1.779e^-6	0.389	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
3L	3639524	3L_3639524_SNP [dm3] 3L_3639524_SNP [dm6]	T	A	2.037e^-6	0.389	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12468660	3L_12468660_SNP [dm3] 3L_12475560_SNP [dm6]	G	A	2.122e^-6	0.389	INTRON CG10663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23301260	3R_23301260_SNP [dm3] 3R_27475538_SNP [dm6]	G	A	2.184e^-6	0.389	INTERGENIC
3L	3639532	3L_3639532_SNP [dm3] 3L_3639532_SNP [dm6]	G	T	2.221e^-6	0.389	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1235182	3L_1235182_SNP [dm3] 3L_1235182_SNP [dm6]	C	T	2.279e^-6	0.389	SYNONYMOUS_CODING CG33966 UPSTREAM CR45747 & 1 other
X	16047946	X_16047946_SNP [dm3] X_16153913_SNP [dm6]	T	A	2.578e^-6	0.403	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11178795	3L_11178795_SNP [dm3] 3L_11185695_SNP [dm6]	T	C	2.806e^-6	0.405	INTRON GlcAT-P
X	16063953	X_16063953_SNP [dm3] X_16169920_SNP [dm6]	G	A	4.019e^-6	0.444	INTERGENIC
X	16063952	X_16063952_SNP [dm3] X_16169919_SNP [dm6]	A	G	4.186e^-6	0.444	INTERGENIC
3L	3639513	3L_3639513_SNP [dm3] 3L_3639513_SNP [dm6]	T	G	4.222e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639469	3L_3639469_SNP [dm3] 3L_3639469_SNP [dm6]	A	T	4.295e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5732100	2L_5732100_SNP [dm3] 2L_5732100_SNP [dm6]	A	C	4.472e^-6	0.444	INTRON CG11030	TF binding site mE1_TFBS_HSA
3L	3639464	3L_3639464_SNP [dm3] 3L_3639464_SNP [dm6]	G	A	4.729e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639444	3L_3639444_DEL [dm3] 3L_3639444_DEL [dm6]	CTTAAGACAAA...	C	4.737e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639465	3L_3639465_SNP [dm3] 3L_3639465_SNP [dm6]	A	T	5.513e^-6	0.481	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16535990	3L_16535990_SNP [dm3] 3L_16542890_SNP [dm6]	C	T	5.645e^-6	0.481	INTRON CG43373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3916039	3L_3916039_SNP [dm3] 3L_3916039_SNP [dm6]	C	T	6.059e^-6	0.494	INTRON Eip63F-1
3L	16535074	3L_16535074_SNP [dm3] 3L_16541974_SNP [dm6]	T	C	6.613e^-6	0.502	INTRON CG43373
3L	3639494	3L_3639494_SNP [dm3] 3L_3639494_SNP [dm6]	T	G	6.927e^-6	0.502	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23542161	3R_23542161_SNP [dm3] 3R_27716439_SNP [dm6]	C	G	7.251e^-6	0.502	INTERGENIC
3R	23332511	3R_23332511_SNP [dm3] 3R_27506789_SNP [dm6]	T	C	7.395e^-6	0.502	INTERGENIC
2L	17884138	2L_17884138_SNP [dm3] 2L_17884138_SNP [dm6]	C	T	7.877e^-6	0.502	INTERGENIC
3L	5687833	3L_5687833_SNP [dm3] 3L_5694733_SNP [dm6]	T	A	7.954e^-6	0.502	INTRON sif
3L	3639478	3L_3639478_SNP [dm3] 3L_3639478_SNP [dm6]	T	G	8.200e^-6	0.502	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15581655	X_15581655_SNP [dm3] X_15687622_SNP [dm6]	T	A	8.410e^-6	0.502	INTRON CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17884110	2L_17884110_SNP [dm3] 2L_17884110_SNP [dm6]	G	A	8.791e^-6	0.502	INTERGENIC
2L	1069078	2L_1069078_DEL [dm3] 2L_1069078_DEL [dm6]	TGAAAACAGCACACTAT...	T	8.829e^-6	0.502	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	3639497	3L_3639497_SNP [dm3] 3L_3639497_SNP [dm6]	T	A	9.272e^-6	0.502	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16536053	3L_16536053_SNP [dm3] 3L_16542953_SNP [dm6]	T	A	9.609e^-6	0.502	INTRON CG43373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7344137	3L_7344137_SNP [dm3] 3L_7351037_SNP [dm6]	A	C	9.646e^-6	0.502	INTRON qm
3L	6717938	3L_6717938_SNP [dm3] 3L_6724838_SNP [dm6]	C	A	1.007e^-5	0.503	DOWNSTREAM CR44523 INTERGENIC	regulatory region REDfly_CRMs
X	3861980	X_3861980_SNP [dm3] X_3967947_SNP [dm6]	A	C	1.019e^-5	0.503	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	1.111e^-5	0.509	INTERGENIC
2L	16369224	2L_16369224_SNP [dm3] 2L_16369224_SNP [dm6]	G	C	1.144e^-5	0.509	INTERGENIC
2L	5732098	2L_5732098_SNP [dm3] 2L_5732098_SNP [dm6]	C	T	1.233e^-5	0.509	INTRON CG11030	TF binding site mE1_TFBS_HSA
2L	14141750	2L_14141750_SNP [dm3] 2L_14141750_SNP [dm6]	C	A	1.244e^-5	0.509	INTRON CG17341
X	3862021	X_3862021_SNP [dm3] X_3967988_SNP [dm6]	T	A	1.253e^-5	0.509	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
X	20406045	X_20406045_DEL [dm3] X_20535018_DEL [dm6]	AA	A	1.259e^-5	0.509	INTERGENIC
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	1.285e^-5	0.509	INTERGENIC
2R	4377596	2R_4377596_SNP [dm3] 2R_8490091_SNP [dm6]	T	A	1.286e^-5	0.509	INTRON mtt
3R	11742996	3R_11742996_SNP [dm3] 3R_15917274_SNP [dm6]	C	A	1.320e^-5	0.509	UPSTREAM CG45105 INTRON CG45105
2L	14143252	2L_14143252_SNP [dm3] 2L_14143252_SNP [dm6]	T	C	1.324e^-5	0.509	INTRON CG17341
3L	3639496	3L_3639496_SNP [dm3] 3L_3639496_SNP [dm6]	G	A	1.330e^-5	0.509	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3674083	2L_3674083_SNP [dm3] 2L_3674083_SNP [dm6]	T	C	1.393e^-5	0.522	INTRON CG34340
X	2161724	X_2161724_SNP [dm3] X_2267691_SNP [dm6]	G	A	1.451e^-5	0.534	INTRON CG2924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6709317	2R_6709317_SNP [dm3] 2R_10821812_SNP [dm6]	T	C	1.822e^-5	0.632	UTR_5_PRIME RpS15Ab UPSTREAM Lsm10 DOWNSTREAM Prosbeta5 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1251710	3L_1251710_SNP [dm3] 3L_1251710_SNP [dm6]	T	C	1.931e^-5	0.632	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
3L	17223080	3L_17223080_SNP [dm3] 3L_17229980_SNP [dm6]	C	A	1.946e^-5	0.632	INTRON Rbp6
3R	22380944	3R_22380944_SNP [dm3] 3R_26555222_SNP [dm6]	C	T	1.952e^-5	0.632	INTRON scrib
2R	2038754	2R_2038754_INS [dm3] 2R_6151249_INS [dm6]	T	TTT	1.976e^-5	0.632	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	20064228	3L_20064228_SNP [dm3] 3L_20071128_SNP [dm6]	T	A	2.015e^-5	0.632	INTRON sNPF-R
3L	20064231	3L_20064231_SNP [dm3] 3L_20071131_SNP [dm6]	G	C	2.015e^-5	0.632	INTRON sNPF-R
3L	20064313	3L_20064313_SNP [dm3] 3L_20071213_SNP [dm6]	C	T	2.015e^-5	0.632	INTRON sNPF-R
3L	20064176	3L_20064176_DEL [dm3] 3L_20071076_DEL [dm6]	AATATCCCAAA...	A	2.140e^-5	0.632	INTRON sNPF-R
3L	1260886	3L_1260886_SNP [dm3] 3L_1260886_SNP [dm6]	T	A	2.160e^-5	0.632	INTRON CG9134
3R	16628213	3R_16628213_SNP [dm3] 3R_20802491_SNP [dm6]	T	G	2.174e^-5	0.632	NON_SYNONYMOUS_CODING Syp INTRON Syp
3L	15251925	3L_15251925_SNP [dm3] 3L_15258825_SNP [dm6]	A	G	2.177e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14154733	X_14154733_INS [dm3] X_14260700_INS [dm6]	T	TG	2.190e^-5	0.632	UPSTREAM CG1461 INTERGENIC
X	14154735	X_14154735_SNP [dm3] X_14260702_SNP [dm6]	A	G	2.190e^-5	0.632	UPSTREAM CG1461 INTERGENIC
3R	18527555	3R_18527555_SNP [dm3] 3R_22701833_SNP [dm6]	C	A	2.278e^-5	0.647	UTR_5_PRIME CCAP UPSTREAM CG6972 & 1 other	TF binding site mE1_TFBS_HSA
2L	18629399	2L_18629399_SNP [dm3] 2L_18629399_SNP [dm6]	T	C	2.433e^-5	0.659	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12468633	3L_12468633_SNP [dm3] 3L_12475533_SNP [dm6]	G	T	2.465e^-5	0.659	INTRON CG10663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17274077	X_17274077_SNP [dm3] X_17380044_SNP [dm6]	T	G	2.471e^-5	0.659	INTERGENIC
2L	1069047	2L_1069047_SNP [dm3] 2L_1069047_SNP [dm6]	A	G	2.480e^-5	0.659	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1213136	2L_1213136_SNP [dm3] 2L_1213136_SNP [dm6]	A	G	2.495e^-5	0.659	INTERGENIC
2L	3673391	2L_3673391_SNP [dm3] 2L_3673391_SNP [dm6]	A	T	2.547e^-5	0.663	INTRON CG34340
3L	1266870	3L_1266870_SNP [dm3] 3L_1266870_SNP [dm6]	C	A	2.678e^-5	0.669	INTRON CG9134
3R	16628201	3R_16628201_SNP [dm3] 3R_20802479_SNP [dm6]	T	G	2.695e^-5	0.669	NON_SYNONYMOUS_CODING Syp INTRON Syp
3R	16628115	3R_16628115_SNP [dm3] 3R_20802393_SNP [dm6]	G	C	2.701e^-5	0.669	NON_SYNONYMOUS_CODING Syp SYNONYMOUS_CODING Syp INTRON Syp
3R	16521700	3R_16521700_SNP [dm3] 3R_20695978_SNP [dm6]	A	T	2.710e^-5	0.669	INTRON Oamb
3R	15976785	3R_15976785_SNP [dm3] 3R_20151063_SNP [dm6]	A	C	2.890e^-5	0.695	INTERGENIC
2L	1093738	2L_1093738_SNP [dm3] 2L_1093738_SNP [dm6]	C	A	2.892e^-5	0.695	INTRON CG4629
2L	18625359	2L_18625359_SNP [dm3] 2L_18625359_SNP [dm6]	G	C	2.939e^-5	0.695	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6503843	2R_6503843_SNP [dm3] 2R_10616338_SNP [dm6]	A	C	2.995e^-5	0.695	UTR_3_PRIME psq DOWNSTREAM psq
2L	2121237	2L_2121237_SNP [dm3] 2L_2121237_SNP [dm6]	A	T	3.022e^-5	0.695	INTERGENIC
2L	14143140	2L_14143140_SNP [dm3] 2L_14143140_SNP [dm6]	T	C	3.038e^-5	0.695	INTRON CG17341
3L	2311391	3L_2311391_SNP [dm3] 3L_2311391_SNP [dm6]	A	C	3.168e^-5	0.703	INTERGENIC
3R	15976933	3R_15976933_SNP [dm3] 3R_20151211_SNP [dm6]	A	G	3.178e^-5	0.703	INTERGENIC
2L	1213704	2L_1213704_SNP [dm3] 2L_1213704_SNP [dm6]	T	A	3.318e^-5	0.703	DOWNSTREAM CR45346 INTERGENIC
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	3.397e^-5	0.703	INTRON Con
3L	3639540	3L_3639540_SNP [dm3] 3L_3639540_SNP [dm6]	T	C	3.451e^-5	0.703	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1068606	2L_1068606_SNP [dm3] 2L_1068606_SNP [dm6]	C	T	3.472e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068607	2L_1068607_SNP [dm3] 2L_1068607_SNP [dm6]	C	T	3.472e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068609	2L_1068609_SNP [dm3] 2L_1068609_SNP [dm6]	A	G	3.472e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18796633	3R_18796633_SNP [dm3] 3R_22970911_SNP [dm6]	T	C	3.473e^-5	0.703	INTERGENIC
2L	1069128	2L_1069128_SNP [dm3] 2L_1069128_SNP [dm6]	T	C	3.485e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	1263692	3L_1263692_SNP [dm3] 3L_1263692_SNP [dm6]	C	A	3.512e^-5	0.703	INTRON CG9134
2L	1069104	2L_1069104_SNP [dm3] 2L_1069104_SNP [dm6]	A	C	3.526e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1068402	2L_1068402_SNP [dm3] 2L_1068402_SNP [dm6]	A	G	3.592e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19599284	X_19599284_SNP [dm3] X_19705251_SNP [dm6]	G	C	3.611e^-5	0.703	SYNONYMOUS_CODING CG14230 UPSTREAM CG14232	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25279755	3R_25279755_SNP [dm3] 3R_29454033_SNP [dm6]	T	A	3.636e^-5	0.703	INTRON Ptp99A
3L	10663935	3L_10663935_INS [dm3] 3L_10670835_INS [dm6]	G	GTGAACTCTATCTCGGAAGC...	3.717e^-5	0.706	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	2525966	2L_2525966_SNP [dm3] 2L_2525966_SNP [dm6]	G	T	3.759e^-5	0.706	INTERGENIC
2R	17867506	2R_17867506_SNP [dm3] 2R_21980001_SNP [dm6]	G	A	3.765e^-5	0.706	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad

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By genomic position
Variant impact
Gene name

FarPoint_Butanedione phenotype

Phenotype distribution and association to known covariates

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Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results