DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.341e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.9056	0.0883
In_3R_P	5.6217	0.0602

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2417 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	14156205	2R_14156205_SNP [dm3] 2R_18268700_SNP [dm6]	T	G	6.803e^-7	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156202	2R_14156202_SNP [dm3] 2R_18268697_SNP [dm6]	A	T	6.813e^-7	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156201	2R_14156201_SNP [dm3] 2R_18268696_SNP [dm6]	C	T	8.333e^-7	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19424533	2L_19424533_SNP [dm3] 2L_19424533_SNP [dm6]	G	A	1.032e^-6	0.328	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
2R	14156207	2R_14156207_INS [dm3] 2R_18268702_INS [dm6]	T	GTTCA	1.072e^-6	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1679041	3L_1679041_SNP [dm3] 3L_1679041_SNP [dm6]	C	T	1.202e^-6	0.328	INTRON CG7991
2R	14156204	2R_14156204_SNP [dm3] 2R_18268699_SNP [dm6]	A	T	1.223e^-6	0.328	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7205084	3L_7205084_SNP [dm3] 3L_7211984_SNP [dm6]	G	A	2.562e^-6	0.578	INTERGENIC
2R	14156193	2R_14156193_SNP [dm3] 2R_18268688_SNP [dm6]	T	G	3.342e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15757288	3L_15757288_SNP [dm3] 3L_15764188_SNP [dm6]	T	C	3.453e^-6	0.578	INTERGENIC
2R	14156160	2R_14156160_SNP [dm3] 2R_18268655_SNP [dm6]	G	T	3.917e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156280	2R_14156280_SNP [dm3] 2R_18268775_SNP [dm6]	T	C	3.993e^-6	0.578	INTERGENIC
2R	14156245	2R_14156245_SNP [dm3] 2R_18268740_SNP [dm6]	T	A	4.367e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156212	2R_14156212_SNP [dm3] 2R_18268707_SNP [dm6]	G	A	4.452e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15756404	3L_15756404_SNP [dm3] 3L_15763304_SNP [dm6]	T	G	4.626e^-6	0.578	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19424388	2L_19424388_SNP [dm3] 2L_19424388_SNP [dm6]	G	C	5.309e^-6	0.62	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13456999	X_13456999_SNP [dm3] X_13562966_SNP [dm6]	T	C	6.206e^-6	0.62	UTR_3_PRIME CG32633 UPSTREAM Tango13 DOWNSTREAM CG32633	TF binding site mE1_TFBS_zfh1
2R	14156218	2R_14156218_SNP [dm3] 2R_18268713_SNP [dm6]	A	T	6.866e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14156223	2R_14156223_DEL [dm3] 2R_18268718_DEL [dm6]	AT	A	6.866e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17858734	2L_17858734_SNP [dm3] 2L_17858734_SNP [dm6]	T	C	7.146e^-6	0.62	INTRON CadN2
X	9592398	X_9592398_DEL [dm3] X_9698365_DEL [dm6]	GA	G	7.945e^-6	0.62	DOWNSTREAM btd INTERGENIC
3L	7500741	3L_7500741_SNP [dm3] 3L_7507641_SNP [dm6]	T	C	8.503e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9766823	3R_9766823_SNP [dm3] 3R_13941101_SNP [dm6]	A	C	9.365e^-6	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	14156182	2R_14156182_SNP [dm3] 2R_18268677_SNP [dm6]	T	C	9.445e^-6	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9639202	3L_9639202_SNP [dm3] 3L_9646102_SNP [dm6]	T	A	1.000e^-5	0.62	INTRON fry & 1 other
3L	13623864	3L_13623864_SNP [dm3] 3L_13630764_SNP [dm6]	C	T	1.008e^-5	0.62	INTRON bru-3
3R	11030691	3R_11030691_DEL [dm3] 3R_15204969_DEL [dm6]	AGAATTGTTGTAAACAATCA...	T	1.031e^-5	0.62	INTRON Spn88Ea
2L	16740554	2L_16740554_INS [dm3] 2L_16740554_INS [dm6]	T	TT	1.081e^-5	0.62	INTRON ChLD3
3R	24797399	3R_24797399_SNP [dm3] 3R_28971677_SNP [dm6]	A	C	1.088e^-5	0.62	EXON CR45669
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	1.112e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	6579051	3L_6579051_SNP [dm3] 3L_6585951_SNP [dm6]	G	T	1.117e^-5	0.62	INTRON CG18769 & 1 other
2R	14955367	2R_14955367_SNP [dm3] 2R_19067862_SNP [dm6]	A	C	1.166e^-5	0.62	INTRON 5-HT1A
2L	19430366	2L_19430366_SNP [dm3] 2L_19430366_SNP [dm6]	G	A	1.209e^-5	0.62	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14156282	2R_14156282_SNP [dm3] 2R_18268777_SNP [dm6]	A	C	1.245e^-5	0.62	INTERGENIC
3L	14398211	3L_14398211_SNP [dm3] 3L_14405111_SNP [dm6]	C	T	1.325e^-5	0.62	NON_SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11030744	3R_11030744_SNP [dm3] 3R_15205022_SNP [dm6]	G	C	1.328e^-5	0.62	INTRON Spn88Ea
2R	14955652	2R_14955652_SNP [dm3] 2R_19068147_SNP [dm6]	A	T	1.350e^-5	0.62	INTRON 5-HT1A
3L	6918567	3L_6918567_SNP [dm3] 3L_6925467_SNP [dm6]	A	G	1.410e^-5	0.62	INTERGENIC
3R	23884213	3R_23884213_SNP [dm3] 3R_28058491_SNP [dm6]	T	G	1.420e^-5	0.62	INTRON CG34362
3R	17544014	3R_17544014_SNP [dm3] 3R_21718292_SNP [dm6]	T	C	1.446e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	11649652	3R_11649652_SNP [dm3] 3R_15823930_SNP [dm6]	A	C	1.533e^-5	0.62	UTR_3_PRIME alpha-Man-IIb & 1 other DOWNSTREAM rec
2R	14156185	2R_14156185_SNP [dm3] 2R_18268680_SNP [dm6]	A	G	1.614e^-5	0.62	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14955642	2R_14955642_SNP [dm3] 2R_19068137_SNP [dm6]	T	A	1.657e^-5	0.62	INTRON 5-HT1A
2R	14955624	2R_14955624_SNP [dm3] 2R_19068119_SNP [dm6]	T	C	1.660e^-5	0.62	INTRON 5-HT1A
2L	4370379	2L_4370379_SNP [dm3] 2L_4370379_SNP [dm6]	G	A	1.693e^-5	0.62	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14955656	2R_14955656_SNP [dm3] 2R_19068151_SNP [dm6]	A	T	1.703e^-5	0.62	INTRON 5-HT1A
2L	5008719	2L_5008719_SNP [dm3] 2L_5008719_SNP [dm6]	A	G	1.713e^-5	0.62	SYNONYMOUS_CODING Rtnl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	15002427	2R_15002427_SNP [dm3] 2R_19114922_SNP [dm6]	T	C	1.794e^-5	0.62	INTRON 5-HT1A
3L	20123085	3L_20123085_SNP [dm3] 3L_20129985_SNP [dm6]	T	C	1.824e^-5	0.62	SYNONYMOUS_CODING gig DOWNSTREAM obst-J	TF binding site BDTNP1_TFBS_twi
X	19299442	X_19299442_SNP [dm3] X_19405409_SNP [dm6]	A	G	1.827e^-5	0.62	INTRON kek5
3R	4477060	3R_4477060_SNP [dm3] 3R_8651338_SNP [dm6]	C	T	1.848e^-5	0.62	SYNONYMOUS_CODING CG8021 UPSTREAM Mkk4 DOWNSTREAM Dhod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	1.849e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	11523381	3L_11523381_DEL [dm3] 3L_11530281_DEL [dm6]	AA	A	1.859e^-5	0.62	INTRON Mob2
2R	14955621	2R_14955621_INS [dm3] 2R_19068116_INS [dm6]	A	AAAACATGCAGAGCTAATCA...	1.865e^-5	0.62	INTRON 5-HT1A
3L	11523433	3L_11523433_SNP [dm3] 3L_11530333_SNP [dm6]	C	T	1.881e^-5	0.62	INTRON Mob2
2L	19430526	2L_19430526_SNP [dm3] 2L_19430526_SNP [dm6]	T	A	1.900e^-5	0.62	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	10556553	3L_10556553_SNP [dm3] 3L_10563453_SNP [dm6]	T	A	1.942e^-5	0.62	INTRON A2bp1
3L	15421165	3L_15421165_SNP [dm3] 3L_15428065_SNP [dm6]	T	C	2.029e^-5	0.62	INTERGENIC
3L	16883811	3L_16883811_DEL [dm3] 3L_16890711_DEL [dm6]	ATGTA	A	2.080e^-5	0.62	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9224913	2L_9224913_SNP [dm3] 2L_9224913_SNP [dm6]	A	G	2.108e^-5	0.62	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	967865	3L_967865_SNP [dm3] 3L_967865_SNP [dm6]	C	T	2.177e^-5	0.62	INTRON Glut1
3R	11647499	3R_11647499_SNP [dm3] 3R_15821777_SNP [dm6]	T	A	2.191e^-5	0.62	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad
3R	26960433	3R_26960433_DEL [dm3] 3R_31134711_DEL [dm6]	TT	T	2.203e^-5	0.62	INTRON Gycbeta100B
2L	14768240	2L_14768240_SNP [dm3] 2L_14768240_SNP [dm6]	A	T	2.226e^-5	0.62	INTERGENIC
X	7244155	X_7244155_SNP [dm3] X_7350122_SNP [dm6]	T	C	2.340e^-5	0.62	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19329678	3R_19329678_SNP [dm3] 3R_23503956_SNP [dm6]	G	A	2.368e^-5	0.62	INTERGENIC
2R	8612806	2R_8612806_SNP [dm3] 2R_12725301_SNP [dm6]	C	T	2.386e^-5	0.62	INTRON CG42663
3R	22615296	3R_22615296_SNP [dm3] 3R_26789574_SNP [dm6]	C	T	2.393e^-5	0.62	INTERGENIC
3L	17297619	3L_17297619_SNP [dm3] 3L_17304519_SNP [dm6]	C	T	2.395e^-5	0.62	INTERGENIC
3R	17543867	3R_17543867_INS [dm3] 3R_21718145_INS [dm6]	C	CCTCCTAAC	2.400e^-5	0.62	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	4477063	3R_4477063_SNP [dm3] 3R_8651341_SNP [dm6]	C	G	2.403e^-5	0.62	SYNONYMOUS_CODING CG8021 UPSTREAM Mkk4 DOWNSTREAM Dhod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19416744	2L_19416744_SNP [dm3] 2L_19416744_SNP [dm6]	A	G	2.410e^-5	0.62	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	15372476	2L_15372476_SNP [dm3] 2L_15372476_SNP [dm6]	G	A	2.428e^-5	0.62	INTERGENIC
3L	10740572	3L_10740572_SNP [dm3] 3L_10747472_SNP [dm6]	A	G	2.447e^-5	0.62	INTERGENIC
3R	9070158	3R_9070158_SNP [dm3] 3R_13244436_SNP [dm6]	A	G	2.525e^-5	0.63	INTRON Ace
2R	8612813	2R_8612813_SNP [dm3] 2R_12725308_SNP [dm6]	C	T	2.553e^-5	0.63	INTRON CG42663
3L	18010908	3L_18010908_SNP [dm3] 3L_18017808_SNP [dm6]	A	C	2.623e^-5	0.639	INTRON Eip75B
2R	18059171	2R_18059171_SNP [dm3] 2R_22171666_SNP [dm6]	A	G	2.663e^-5	0.64	SYNONYMOUS_CODING a INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15359747	2L_15359747_SNP [dm3] 2L_15359747_SNP [dm6]	A	G	2.760e^-5	0.651	INTERGENIC
2L	18296450	2L_18296450_SNP [dm3] 2L_18296450_SNP [dm6]	C	T	2.795e^-5	0.651	SYNONYMOUS_CODING CG5790	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	14764504	2L_14764504_SNP [dm3] 2L_14764504_SNP [dm6]	C	A	2.832e^-5	0.651	DOWNSTREAM CSN1a INTERGENIC
X	16138957	X_16138957_SNP [dm3] X_16244924_SNP [dm6]	A	G	2.848e^-5	0.651	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	16155189	X_16155189_SNP [dm3] X_16261156_SNP [dm6]	T	C	2.960e^-5	0.661	INTERGENIC
2L	19422638	2L_19422638_SNP [dm3] 2L_19422638_SNP [dm6]	A	G	2.963e^-5	0.661	INTRON Pax
2L	19377269	2L_19377269_SNP [dm3] 2L_19377269_SNP [dm6]	A	C	3.120e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19430339	2L_19430339_SNP [dm3] 2L_19430339_SNP [dm6]	T	C	3.148e^-5	0.671	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17060913	3R_17060913_SNP [dm3] 3R_21235191_SNP [dm6]	G	A	3.324e^-5	0.671	INTRON e	regulatory region REDfly_CRMs
3L	20130041	3L_20130041_SNP [dm3] 3L_20136941_SNP [dm6]	C	A	3.337e^-5	0.671	NON_SYNONYMOUS_CODING gig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17902066	3L_17902066_SNP [dm3] 3L_17908966_SNP [dm6]	A	G	3.379e^-5	0.671	SYNONYMOUS_CODING CG14353 DOWNSTREAM CG5290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19423821	2L_19423821_SNP [dm3] 2L_19423821_SNP [dm6]	A	C	3.387e^-5	0.671	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	14767866	2L_14767866_SNP [dm3] 2L_14767866_SNP [dm6]	C	G	3.437e^-5	0.671	DOWNSTREAM CG4701 INTERGENIC
3L	9750430	3L_9750430_SNP [dm3] 3L_9757330_SNP [dm6]	G	A	3.524e^-5	0.671	INTRON CG42268
3R	23884212	3R_23884212_SNP [dm3] 3R_28058490_SNP [dm6]	G	T	3.524e^-5	0.671	INTRON CG34362
2R	9309568	2R_9309568_SNP [dm3] 2R_13422063_SNP [dm6]	G	A	3.554e^-5	0.671	DOWNSTREAM CG30060 INTRON CG42321
2R	18600649	2R_18600649_SNP [dm3] 2R_22713144_SNP [dm6]	C	G	3.566e^-5	0.671	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3L	11523502	3L_11523502_SNP [dm3] 3L_11530402_SNP [dm6]	C	T	3.596e^-5	0.671	INTRON Mob2
2L	10801399	2L_10801399_SNP [dm3] 2L_10801399_SNP [dm6]	A	T	3.616e^-5	0.671	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2L	4259673	2L_4259673_SNP [dm3] 2L_4259673_SNP [dm6]	G	A	3.731e^-5	0.671	DOWNSTREAM CR44080 INTERGENIC
3L	18011105	3L_18011105_SNP [dm3] 3L_18018005_SNP [dm6]	T	C	3.753e^-5	0.671	INTRON Eip75B
2L	917252	2L_917252_SNP [dm3] 2L_917252_SNP [dm6]	C	A	3.790e^-5	0.671	SYNONYMOUS_CODING GluRIIC
2R	14955648	2R_14955648_INS [dm3] 2R_19068143_INS [dm6]	T	TTTGTAAAAAAGAACT...	3.801e^-5	0.671	INTRON 5-HT1A
2L	18262291	2L_18262291_SNP [dm3] 2L_18262291_SNP [dm6]	C	A	3.883e^-5	0.671	INTRON CG42750 EXON CR44901
3L	13686641	3L_13686641_SNP [dm3] 3L_13693541_SNP [dm6]	T	G	3.957e^-5	0.671	INTRON bru-3
2L	13871532	2L_13871532_INS [dm3] 2L_13871532_INS [dm6]	C	CCTCTCTTC	3.978e^-5	0.671	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
3L	7500556	3L_7500556_SNP [dm3] 3L_7507456_SNP [dm6]	G	A	3.994e^-5	0.671	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3893362	3R_3893362_SNP [dm3] 3R_8067640_SNP [dm6]	T	A	4.014e^-5	0.671	INTRON mAChR-B
3R	18292812	3R_18292812_SNP [dm3] 3R_22467090_SNP [dm6]	C	A	4.032e^-5	0.671	UTR_3_PRIME CG5377 DOWNSTREAM Pebp1	TF binding site mE1_TFBS_cad
3R	9079013	3R_9079013_SNP [dm3] 3R_13253291_SNP [dm6]	G	A	4.065e^-5	0.671	INTRON Ace
3R	9079122	3R_9079122_SNP [dm3] 3R_13253400_SNP [dm6]	C	A	4.078e^-5	0.671	INTRON Ace
2L	4722874	2L_4722874_SNP [dm3] 2L_4722874_SNP [dm6]	C	A	4.153e^-5	0.671	DOWNSTREAM CG34351 INTERGENIC
2L	18265214	2L_18265214_SNP [dm3] 2L_18265214_SNP [dm6]	T	C	4.154e^-5	0.671	INTRON CG42750
X	3055349	X_3055349_SNP [dm3] X_3161316_SNP [dm6]	G	A	4.164e^-5	0.671	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18262430	2L_18262430_SNP [dm3] 2L_18262430_SNP [dm6]	C	T	4.171e^-5	0.671	UPSTREAM CR44901 INTRON CG42750
3R	13043535	3R_13043535_SNP [dm3] 3R_17217813_SNP [dm6]	G	C	4.209e^-5	0.671	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
3R	17542708	3R_17542708_SNP [dm3] 3R_21716986_SNP [dm6]	T	A	4.214e^-5	0.671	INTRON CG31176
3R	26687210	3R_26687210_SNP [dm3] 3R_30861488_SNP [dm6]	A	C	4.258e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19416725	2L_19416725_SNP [dm3] 2L_19416725_SNP [dm6]	C	T	4.313e^-5	0.671	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2R	6292330	2R_6292330_SNP [dm3] 2R_10404825_SNP [dm6]	G	A	4.345e^-5	0.671	INTRON CG42732
2R	14955647	2R_14955647_SNP [dm3] 2R_19068142_SNP [dm6]	A	T	4.374e^-5	0.671	INTRON 5-HT1A
2L	19425189	2L_19425189_SNP [dm3] 2L_19425189_SNP [dm6]	G	A	4.414e^-5	0.671	INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
X	3055358	X_3055358_SNP [dm3] X_3161325_SNP [dm6]	C	G	4.424e^-5	0.671	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6290392	3L_6290392_SNP [dm3] 3L_6297292_SNP [dm6]	G	T	4.527e^-5	0.671	INTERGENIC
X	3055348	X_3055348_SNP [dm3] X_3161315_SNP [dm6]	T	C	4.530e^-5	0.671	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3055357	X_3055357_SNP [dm3] X_3161324_SNP [dm6]	C	A	4.530e^-5	0.671	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18018938	3L_18018938_SNP [dm3] 3L_18025838_SNP [dm6]	A	T	4.534e^-5	0.671	INTRON Eip75B
3R	17957501	3R_17957501_SNP [dm3] 3R_22131779_SNP [dm6]	T	G	4.540e^-5	0.671	INTRON CG42390
2L	2923981	2L_2923981_SNP [dm3] 2L_2923981_SNP [dm6]	G	A	4.575e^-5	0.671	INTRON lilli
2L	17904630	2L_17904630_SNP [dm3] 2L_17904630_SNP [dm6]	C	A	4.580e^-5	0.671	INTERGENIC
2L	16978583	2L_16978583_SNP [dm3] 2L_16978583_SNP [dm6]	T	G	4.618e^-5	0.671	INTRON beat-IIIb
2L	19422615	2L_19422615_SNP [dm3] 2L_19422615_SNP [dm6]	C	G	4.741e^-5	0.674	INTRON Pax
3L	17901602	3L_17901602_SNP [dm3] 3L_17908502_SNP [dm6]	A	G	4.777e^-5	0.674	SYNONYMOUS_CODING CG14353 UPSTREAM Prestin DOWNSTREAM CG5290	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14036743	2L_14036743_SNP [dm3] 2L_14036743_SNP [dm6]	A	G	4.857e^-5	0.674	EXON CR45284
2L	5086558	2L_5086558_SNP [dm3] 2L_5086558_SNP [dm6]	A	C	4.872e^-5	0.674	INTRON pgant5
X	16795164	X_16795164_SNP [dm3] X_16901131_SNP [dm6]	G	A	4.891e^-5	0.674	DOWNSTREAM CR44754 INTERGENIC
3L	15196727	3L_15196727_SNP [dm3] 3L_15203627_SNP [dm6]	G	A	4.945e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12935151	2R_12935151_SNP [dm3] 2R_17047646_SNP [dm6]	A	C	4.964e^-5	0.674	SYNONYMOUS_CODING CG9642 DOWNSTREAM CG9640
3L	13225024	3L_13225024_SNP [dm3] 3L_13231924_SNP [dm6]	T	A	4.984e^-5	0.674	INTRON caps
3R	16271638	3R_16271638_SNP [dm3] 3R_20445916_SNP [dm6]	T	A	5.031e^-5	0.674	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20367013	X_20367013_SNP [dm3] X_20495986_SNP [dm6]	T	A	5.031e^-5	0.674	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20276285	3L_20276285_SNP [dm3] 3L_20283185_SNP [dm6]	A	G	5.085e^-5	0.674	INTRON gogo
2L	11081872	2L_11081872_SNP [dm3] 2L_11081872_SNP [dm6]	C	A	5.150e^-5	0.674	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14156232	2R_14156232_SNP [dm3] 2R_18268727_SNP [dm6]	A	G	5.182e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13206390	3L_13206390_INS [dm3] 3L_13213290_INS [dm6]	T	TTT	5.301e^-5	0.674	UPSTREAM tRNA:CR32127 DOWNSTREAM tRNA:CR32126 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9431224	2L_9431224_SNP [dm3] 2L_9431224_SNP [dm6]	A	C	5.306e^-5	0.674	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5008871	2L_5008871_SNP [dm3] 2L_5008871_SNP [dm6]	G	C	5.349e^-5	0.674	NON_SYNONYMOUS_CODING Rtnl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	17543897	3R_17543897_SNP [dm3] 3R_21718175_SNP [dm6]	A	T	5.367e^-5	0.674	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	17543984	3R_17543984_SNP [dm3] 3R_21718262_SNP [dm6]	A	T	5.401e^-5	0.674	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	19363380	2L_19363380_SNP [dm3] 2L_19363380_SNP [dm6]	A	G	5.439e^-5	0.674	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7145687	2R_7145687_SNP [dm3] 2R_11258182_SNP [dm6]	T	G	5.442e^-5	0.674	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Ec
3R	17543959	3R_17543959_SNP [dm3] 3R_21718237_SNP [dm6]	T	A	5.447e^-5	0.674	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	5838927	3L_5838927_SNP [dm3] 3L_5845827_SNP [dm6]	A	T	5.550e^-5	0.674	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10571315	X_10571315_SNP [dm3] X_10677282_SNP [dm6]	C	T	5.585e^-5	0.674	INTRON X11Lbeta
2L	19416739	2L_19416739_SNP [dm3] 2L_19416739_SNP [dm6]	A	T	5.642e^-5	0.674	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
3L	19650133	3L_19650133_SNP [dm3] 3L_19657033_SNP [dm6]	T	C	5.642e^-5	0.674	INTRON tey	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14955609	2R_14955609_SNP [dm3] 2R_19068104_SNP [dm6]	T	C	5.671e^-5	0.674	INTRON 5-HT1A
2R	6264951	2R_6264951_SNP [dm3] 2R_10377446_SNP [dm6]	C	A	5.705e^-5	0.674	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
3L	11525242	3L_11525242_SNP [dm3] 3L_11532142_SNP [dm6]	T	C	5.747e^-5	0.674	INTRON Mob2
2L	5419302	2L_5419302_SNP [dm3] 2L_5419302_SNP [dm6]	G	T	5.751e^-5	0.674	INTERGENIC
3L	2665776	3L_2665776_SNP [dm3] 3L_2665776_SNP [dm6]	T	C	5.759e^-5	0.674	INTRON Fife
3L	13182325	3L_13182325_SNP [dm3] 3L_13189225_SNP [dm6]	T	C	5.802e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3080452	2R_3080452_SNP [dm3] 2R_7192947_SNP [dm6]	G	A	5.811e^-5	0.674	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14117695	3R_14117695_SNP [dm3] 3R_18291973_SNP [dm6]	A	C	5.894e^-5	0.674	UPSTREAM l_3_05822 INTRON l_3_05822
X	13068767	X_13068767_SNP [dm3] X_13174734_SNP [dm6]	A	T	5.904e^-5	0.674	INTRON CG34411	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16703580	2L_16703580_SNP [dm3] 2L_16703580_SNP [dm6]	A	T	5.976e^-5	0.674	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25598141	3R_25598141_SNP [dm3] 3R_29772419_SNP [dm6]	T	A	5.998e^-5	0.674	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6576485	3L_6576485_SNP [dm3] 3L_6583385_SNP [dm6]	T	C	6.051e^-5	0.674	INTRON CG18769 & 1 other
3L	10721247	3L_10721247_SNP [dm3] 3L_10728147_SNP [dm6]	T	A	6.081e^-5	0.674	INTERGENIC
3R	17542701	3R_17542701_SNP [dm3] 3R_21716979_SNP [dm6]	A	G	6.093e^-5	0.674	INTRON CG31176
3R	25144414	3R_25144414_DEL [dm3] 3R_29318692_DEL [dm6]	GAGAG	G	6.153e^-5	0.674	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19469493	2L_19469493_SNP [dm3] 2L_19469493_SNP [dm6]	G	A	6.321e^-5	0.674	DOWNSTREAM CR45723 EXON CR45722
2R	15002421	2R_15002421_SNP [dm3] 2R_19114916_SNP [dm6]	T	C	6.357e^-5	0.674	INTRON 5-HT1A
2L	19433475	2L_19433475_SNP [dm3] 2L_19433475_SNP [dm6]	C	A	6.428e^-5	0.674	INTRON Rab9
3L	9583079	3L_9583079_SNP [dm3] 3L_9589979_SNP [dm6]	C	T	6.470e^-5	0.674	INTRON CG42673
2L	19416761	2L_19416761_SNP [dm3] 2L_19416761_SNP [dm6]	A	C	6.481e^-5	0.674	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	19360746	2L_19360746_SNP [dm3] 2L_19360746_SNP [dm6]	A	C	6.505e^-5	0.674	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9810209	3L_9810209_SNP [dm3] 3L_9817109_SNP [dm6]	T	C	6.656e^-5	0.674	INTRON CG43897
X	12942811	X_12942811_SNP [dm3] X_13048778_SNP [dm6]	T	C	6.661e^-5	0.674	INTRON rad
X	5603459	X_5603459_SNP [dm3] X_5709426_SNP [dm6]	A	G	6.670e^-5	0.674	SYNONYMOUS_CODING CG33080 DOWNSTREAM CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	14955375	2R_14955375_SNP [dm3] 2R_19067870_SNP [dm6]	A	G	6.818e^-5	0.674	INTRON 5-HT1A
2L	9671702	2L_9671702_SNP [dm3] 2L_9671702_SNP [dm6]	T	A	6.824e^-5	0.674	UPSTREAM CR44150 INTERGENIC
3L	18011104	3L_18011104_SNP [dm3] 3L_18018004_SNP [dm6]	T	G	6.861e^-5	0.674	INTRON Eip75B
3R	25534465	3R_25534465_INS [dm3] 3R_29708743_INS [dm6]	T	TT	6.875e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19317636	2L_19317636_SNP [dm3] 2L_19317636_SNP [dm6]	A	T	6.926e^-5	0.674	INTERGENIC
2L	15388425	2L_15388425_SNP [dm3] 2L_15388425_SNP [dm6]	T	G	6.927e^-5	0.674	INTERGENIC
3R	16588401	3R_16588401_SNP [dm3] 3R_20762679_SNP [dm6]	G	C	6.934e^-5	0.674	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	18011183	3L_18011183_SNP [dm3] 3L_18018083_SNP [dm6]	G	C	6.943e^-5	0.674	INTRON Eip75B
2R	9309565	2R_9309565_SNP [dm3] 2R_13422060_SNP [dm6]	A	T	6.949e^-5	0.674	DOWNSTREAM CG30060 INTRON CG42321
3L	18254925	3L_18254925_SNP [dm3] 3L_18261825_SNP [dm6]	T	A	6.968e^-5	0.674	INTERGENIC
3R	9107758	3R_9107758_SNP [dm3] 3R_13282036_SNP [dm6]	A	T	7.002e^-5	0.674	INTRON CG8630	TF binding site mE1_TFBS_chinmo
2L	19440132	2L_19440132_SNP [dm3] 2L_19440132_SNP [dm6]	C	T	7.053e^-5	0.674	INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18167568	3L_18167568_SNP [dm3] 3L_18174468_SNP [dm6]	C	T	7.060e^-5	0.674	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5089234	2L_5089234_SNP [dm3] 2L_5089234_SNP [dm6]	C	G	7.066e^-5	0.674	INTRON pgant5
2R	9309621	2R_9309621_SNP [dm3] 2R_13422116_SNP [dm6]	C	A	7.084e^-5	0.674	SYNONYMOUS_CODING CG42321 DOWNSTREAM CG30060
3L	20119874	3L_20119874_SNP [dm3] 3L_20126774_SNP [dm6]	C	T	7.087e^-5	0.674	UPSTREAM CG7365 INTRON CG7365
3L	10444479	3L_10444479_SNP [dm3] 3L_10451379_SNP [dm6]	A	T	7.093e^-5	0.674	INTERGENIC
3R	16947264	3R_16947264_SNP [dm3] 3R_21121542_SNP [dm6]	A	C	7.225e^-5	0.674	INTRON slmb
2L	19416747	2L_19416747_SNP [dm3] 2L_19416747_SNP [dm6]	C	A	7.237e^-5	0.674	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	19416779	2L_19416779_SNP [dm3] 2L_19416779_SNP [dm6]	G	C	7.237e^-5	0.674	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	14768528	2L_14768528_SNP [dm3] 2L_14768528_SNP [dm6]	T	A	7.272e^-5	0.674	INTERGENIC
3R	9691721	3R_9691721_SNP [dm3] 3R_13865999_SNP [dm6]	T	A	7.326e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11629372	3L_11629372_SNP [dm3] 3L_11636272_SNP [dm6]	A	G	7.336e^-5	0.674	INTRON CG32091
2L	8705306	2L_8705306_SNP [dm3] 2L_8705306_SNP [dm6]	C	T	7.343e^-5	0.674	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	7122334	2R_7122334_SNP [dm3] 2R_11234829_SNP [dm6]	T	C	7.378e^-5	0.674	UPSTREAM CG13227 DOWNSTREAM CG13228 INTERGENIC
3L	15896774	3L_15896774_SNP [dm3] 3L_15903674_SNP [dm6]	T	A	7.381e^-5	0.674	INTRON sff
3R	16589282	3R_16589282_SNP [dm3] 3R_20763560_SNP [dm6]	T	G	7.417e^-5	0.674	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16703967	2L_16703967_SNP [dm3] 2L_16703967_SNP [dm6]	A	G	7.435e^-5	0.674	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19371187	2L_19371187_SNP [dm3] 2L_19371187_SNP [dm6]	C	T	7.492e^-5	0.674	SYNONYMOUS_CODING CG17349
2R	14955400	2R_14955400_SNP [dm3] 2R_19067895_SNP [dm6]	A	C	7.571e^-5	0.674	INTRON 5-HT1A
3R	5844255	3R_5844255_SNP [dm3] 3R_10018533_SNP [dm6]	G	T	7.609e^-5	0.674	SYNONYMOUS_CODING Mical DOWNSTREAM Mical
3L	10467345	3L_10467345_DEL [dm3] 3L_10474245_DEL [dm6]	CA	C	7.610e^-5	0.674	INTERGENIC
3L	11629668	3L_11629668_SNP [dm3] 3L_11636568_SNP [dm6]	G	A	7.617e^-5	0.674	INTRON CG32091
3R	11943234	3R_11943234_SNP [dm3] 3R_16117512_SNP [dm6]	T	C	7.637e^-5	0.674	INTRON Sb
3R	23884216	3R_23884216_SNP [dm3] 3R_28058494_SNP [dm6]	T	C	7.676e^-5	0.674	INTRON CG34362
3L	8996316	3L_8996316_SNP [dm3] 3L_9003216_SNP [dm6]	T	G	7.731e^-5	0.674	DOWNSTREAM CG5087 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15372362	2L_15372362_SNP [dm3] 2L_15372362_SNP [dm6]	C	T	7.736e^-5	0.674	INTERGENIC
2R	9309562	2R_9309562_SNP [dm3] 2R_13422057_SNP [dm6]	T	A	7.825e^-5	0.674	DOWNSTREAM CG30060 INTRON CG42321
3R	11030824	3R_11030824_DEL [dm3] 3R_15205102_DEL [dm6]	TT	T	7.831e^-5	0.674	INTRON Spn88Ea
3L	15658609	3L_15658609_SNP [dm3] 3L_15665509_SNP [dm6]	G	C	7.846e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6783458	3L_6783458_SNP [dm3] 3L_6790358_SNP [dm6]	C	T	7.926e^-5	0.674	UTR_5_PRIME vvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16703578	2L_16703578_SNP [dm3] 2L_16703578_SNP [dm6]	T	G	8.048e^-5	0.674	UPSTREAM CR43670 DOWNSTREAM CG31808 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20211788	X_20211788_SNP [dm3] X_20340761_SNP [dm6]	G	C	8.081e^-5	0.674	INTERGENIC
2L	7136916	2L_7136916_SNP [dm3] 2L_7136916_SNP [dm6]	C	A	8.197e^-5	0.674	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7135810	2L_7135810_SNP [dm3] 2L_7135810_SNP [dm6]	G	A	8.229e^-5	0.674	INTRON Pvf3	TF binding site BDTNP1_TFBS_da
3L	8453256	3L_8453256_SNP [dm3] 3L_8460156_SNP [dm6]	T	C	8.233e^-5	0.674	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	19430540	2L_19430540_SNP [dm3] 2L_19430540_SNP [dm6]	C	T	8.298e^-5	0.674	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	21591753	3R_21591753_SNP [dm3] 3R_25766031_SNP [dm6]	T	C	8.358e^-5	0.674	INTERGENIC
2R	18005338	2R_18005338_SNP [dm3] 2R_22117833_SNP [dm6]	G	C	8.360e^-5	0.674	INTRON Vrp1
3R	10201033	3R_10201033_SNP [dm3] 3R_14375311_SNP [dm6]	A	T	8.442e^-5	0.674	DOWNSTREAM CR44943 INTERGENIC
2L	15372478	2L_15372478_SNP [dm3] 2L_15372478_SNP [dm6]	T	G	8.488e^-5	0.674	INTERGENIC
2L	8471813	2L_8471813_SNP [dm3] 2L_8471813_SNP [dm6]	G	T	8.541e^-5	0.674	INTRON d
3L	13216359	3L_13216359_DEL [dm3] 3L_13223259_DEL [dm6]	AAGCTGTTCAA...	A	8.587e^-5	0.674	INTERGENIC
3R	16589284	3R_16589284_SNP [dm3] 3R_20763562_SNP [dm6]	C	T	8.596e^-5	0.674	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16624625	2L_16624625_SNP [dm3] 2L_16624625_SNP [dm6]	G	A	8.646e^-5	0.674	INTRON CG42389
3R	26758687	3R_26758687_SNP [dm3] 3R_30932965_SNP [dm6]	G	T	8.685e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9979768	3R_9979768_SNP [dm3] 3R_14154046_SNP [dm6]	C	A	8.707e^-5	0.674	UPSTREAM CG9722 DOWNSTREAM CG31533 EXON CR44215
2L	19324713	2L_19324713_SNP [dm3] 2L_19324713_SNP [dm6]	A	G	8.779e^-5	0.674	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2516649	2L_2516649_SNP [dm3] 2L_2516649_SNP [dm6]	T	G	8.792e^-5	0.674	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9070344	3R_9070344_SNP [dm3] 3R_13244622_SNP [dm6]	A	G	8.858e^-5	0.674	INTRON Ace
2L	19359382	2L_19359382_SNP [dm3] 2L_19359382_SNP [dm6]	T	A	8.860e^-5	0.674	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6724640	3R_6724640_SNP [dm3] 3R_10898918_SNP [dm6]	G	C	8.884e^-5	0.674	UPSTREAM CR45578 INTERGENIC
2R	3185394	2R_3185394_SNP [dm3] 2R_7297889_SNP [dm6]	T	G	8.933e^-5	0.674	SYNONYMOUS_CODING pwn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11523496	3L_11523496_SNP [dm3] 3L_11530396_SNP [dm6]	A	C	8.937e^-5	0.674	INTRON Mob2
3L	9603666	3L_9603666_SNP [dm3] 3L_9610566_SNP [dm6]	G	A	8.953e^-5	0.674	INTRON CG3280
3L	20149764	3L_20149764_SNP [dm3] 3L_20156664_SNP [dm6]	T	C	9.041e^-5	0.674	INTRON CG42674	TF binding site mE1_TFBS_cad
3R	1787986	3R_1787986_SNP [dm3] 3R_5962264_SNP [dm6]	C	T	9.088e^-5	0.674	INTERGENIC
2L	6313964	2L_6313964_INS [dm3] 2L_6313964_INS [dm6]	A	AG	9.120e^-5	0.674	INTRON Ddr
X	5925061	X_5925061_SNP [dm3] X_6031028_SNP [dm6]	T	G	9.126e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19359327	2L_19359327_SNP [dm3] 2L_19359327_SNP [dm6]	A	G	9.146e^-5	0.674	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9631339	3R_9631339_SNP [dm3] 3R_13805617_SNP [dm6]	A	G	9.151e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	9.158e^-5	0.674	UPSTREAM FucTB & 1 other INTRON FucTB
3L	6977525	3L_6977525_SNP [dm3] 3L_6984425_SNP [dm6]	C	A	9.193e^-5	0.674	SYNONYMOUS_CODING CG32388 UTR_5_PRIME CG43439
2R	18942207	2R_18942207_SNP [dm3] 2R_23054684_SNP [dm6]	G	A	9.257e^-5	0.674	UPSTREAM CG44252 INTERGENIC
3L	2292874	3L_2292874_SNP [dm3] 3L_2292874_SNP [dm6]	A	G	9.377e^-5	0.674	INTRON MsR2
3R	17543949	3R_17543949_SNP [dm3] 3R_21718227_SNP [dm6]	T	A	9.466e^-5	0.674	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	19421717	2L_19421717_SNP [dm3] 2L_19421717_SNP [dm6]	C	T	9.488e^-5	0.674	INTRON Pax
2R	11771743	2R_11771743_SNP [dm3] 2R_15884238_SNP [dm6]	T	G	9.507e^-5	0.674	INTRON sli
2L	19416768	2L_19416768_SNP [dm3] 2L_19416768_SNP [dm6]	T	C	9.519e^-5	0.674	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
3L	20095816	3L_20095816_SNP [dm3] 3L_20102716_SNP [dm6]	G	C	9.531e^-5	0.674	SYNONYMOUS_CODING CG14186	TF binding site mE1_TFBS_chinmo
3R	14082283	3R_14082283_SNP [dm3] 3R_18256561_SNP [dm6]	T	C	9.559e^-5	0.674	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
3R	10201032	3R_10201032_SNP [dm3] 3R_14375310_SNP [dm6]	A	T	9.576e^-5	0.674	DOWNSTREAM CR44943 INTERGENIC
2L	4370397	2L_4370397_SNP [dm3] 2L_4370397_SNP [dm6]	C	T	9.620e^-5	0.674	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13146415	2L_13146415_SNP [dm3] 2L_13146415_SNP [dm6]	A	T	9.637e^-5	0.674	UPSTREAM CR44199 INTERGENIC
2L	14767837	2L_14767837_SNP [dm3] 2L_14767837_SNP [dm6]	T	A	9.650e^-5	0.674	DOWNSTREAM CG4701 INTERGENIC
2R	6623270	2R_6623270_SNP [dm3] 2R_10735765_SNP [dm6]	A	G	9.651e^-5	0.674	START_GAINED CG7220 UTR_5_PRIME CG7220 INTRON CG7220
3R	26758686	3R_26758686_SNP [dm3] 3R_30932964_SNP [dm6]	G	A	9.735e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16074611	2L_16074611_SNP [dm3] 2L_16074611_SNP [dm6]	G	T	9.741e^-5	0.674	INTRON beat-Ia
3L	2149376	3L_2149376_SNP [dm3] 3L_2149376_SNP [dm6]	G	C	9.752e^-5	0.674	INTRON zormin
2L	14765842	2L_14765842_SNP [dm3] 2L_14765842_SNP [dm6]	G	A	9.891e^-5	0.674	UPSTREAM CG4701 INTERGENIC
3R	22322893	3R_22322893_INS [dm3] 3R_26497171_INS [dm6]	G	GG	9.915e^-5	0.674	INTRON plum
3L	6997586	3L_6997586_SNP [dm3] 3L_7004486_SNP [dm6]	C	T	9.921e^-5	0.674	INTRON Mp
3L	10818705	3L_10818705_SNP [dm3] 3L_10825605_SNP [dm6]	C	G	1.002e^-4	0.674	DOWNSTREAM CR45246 INTERGENIC
2L	7136302	2L_7136302_SNP [dm3] 2L_7136302_SNP [dm6]	G	A	1.003e^-4	0.674	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2924001	2L_2924001_DEL [dm3] 2L_2924001_DEL [dm6]	TGTAT	T	1.004e^-4	0.674	INTRON lilli
3L	18017362	3L_18017362_SNP [dm3] 3L_18024262_SNP [dm6]	G	A	1.010e^-4	0.674	INTRON Eip75B
2R	13391822	2R_13391822_INS [dm3] 2R_17504317_INS [dm6]	T	TA	1.017e^-4	0.674	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
2R	18942404	2R_18942404_SNP [dm3] 2R_23054881_SNP [dm6]	C	T	1.020e^-4	0.674	UPSTREAM CG44252 INTERGENIC
3R	11644156	3R_11644156_DEL [dm3] 3R_15818434_DEL [dm6]	AG	A	1.022e^-4	0.674	INTRON alpha-Man-IIb
2L	6828810	2L_6828810_SNP [dm3] 2L_6828810_SNP [dm6]	A	G	1.037e^-4	0.674	INTRON sens-2	TF binding site mE1_TFBS_cad
3R	15864188	3R_15864188_SNP [dm3] 3R_20038466_SNP [dm6]	A	T	1.038e^-4	0.674	UTR_3_PRIME CG17193
2L	19422568	2L_19422568_SNP [dm3] 2L_19422568_SNP [dm6]	C	T	1.042e^-4	0.674	INTRON Pax
3R	17552545	3R_17552545_SNP [dm3] 3R_21726823_SNP [dm6]	G	A	1.047e^-4	0.674	INTERGENIC
3L	18110445	3L_18110445_SNP [dm3] 3L_18117345_SNP [dm6]	A	T	1.049e^-4	0.674	UTR_3_PRIME CG32195 INTRON CG7341
2R	14955563	2R_14955563_SNP [dm3] 2R_19068058_SNP [dm6]	G	A	1.058e^-4	0.674	INTRON 5-HT1A
3R	26762268	3R_26762268_SNP [dm3] 3R_30936546_SNP [dm6]	T	A	1.061e^-4	0.674	UPSTREAM CG15549 DOWNSTREAM CG15550 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19363364	2L_19363364_SNP [dm3] 2L_19363364_SNP [dm6]	C	A	1.062e^-4	0.674	UPSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9063438	X_9063438_SNP [dm3] X_9169405_SNP [dm6]	C	A	1.069e^-4	0.674	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17542269	3R_17542269_SNP [dm3] 3R_21716547_SNP [dm6]	C	T	1.073e^-4	0.674	INTRON CG31176
3L	3344311	3L_3344311_SNP [dm3] 3L_3344311_SNP [dm6]	T	C	1.078e^-4	0.674	INTRON kst
2R	19120909	2R_19120909_SNP [dm3] 2R_23233386_SNP [dm6]	T	C	1.081e^-4	0.674	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2544392	2L_2544392_SNP [dm3] 2L_2544392_SNP [dm6]	C	T	1.089e^-4	0.674	INTERGENIC
3L	18017376	3L_18017376_DEL [dm3] 3L_18024276_DEL [dm6]	AA	A	1.096e^-4	0.674	INTRON Eip75B
2L	622028	2L_622028_SNP [dm3] 2L_622028_SNP [dm6]	A	G	1.103e^-4	0.674	UPSTREAM lectin-21Cb INTERGENIC
X	7244039	X_7244039_SNP [dm3] X_7350006_SNP [dm6]	T	G	1.108e^-4	0.674	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11030770	3R_11030770_SNP [dm3] 3R_15205048_SNP [dm6]	G	A	1.110e^-4	0.674	INTRON Spn88Ea
3R	21590385	3R_21590385_SNP [dm3] 3R_25764663_SNP [dm6]	T	A	1.114e^-4	0.674	INTERGENIC
2L	16737399	2L_16737399_SNP [dm3] 2L_16737399_SNP [dm6]	G	A	1.115e^-4	0.674	SYNONYMOUS_CODING glu	TF binding site mE1_TFBS_sens
2L	3894593	2L_3894593_SNP [dm3] 2L_3894593_SNP [dm6]	G	A	1.116e^-4	0.674	INTRON capu
3L	1539843	3L_1539843_SNP [dm3] 3L_1539843_SNP [dm6]	T	C	1.120e^-4	0.674	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17961669	2L_17961669_SNP [dm3] 2L_17961669_SNP [dm6]	G	A	1.124e^-4	0.674	DOWNSTREAM btv INTERGENIC
2L	9500685	2L_9500685_SNP [dm3] 2L_9500685_SNP [dm6]	T	A	1.138e^-4	0.674	INTRON CG33298
3L	15442942	3L_15442942_SNP [dm3] 3L_15449842_SNP [dm6]	A	G	1.139e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22487219	3R_22487219_SNP [dm3] 3R_26661497_SNP [dm6]	A	G	1.140e^-4	0.674	INTRON beat-VII
3R	16595602	3R_16595602_SNP [dm3] 3R_20769880_SNP [dm6]	A	G	1.141e^-4	0.674	DOWNSTREAM Takl1 INTRON Syp
3R	9095198	3R_9095198_SNP [dm3] 3R_13269476_SNP [dm6]	G	A	1.143e^-4	0.674	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
3L	4650823	3L_4650823_SNP [dm3] 3L_4650823_SNP [dm6]	C	T	1.144e^-4	0.674	DOWNSTREAM CG32238 INTRON axo
2R	6292317	2R_6292317_SNP [dm3] 2R_10404812_SNP [dm6]	A	T	1.145e^-4	0.674	INTRON CG42732
3R	7604740	3R_7604740_SNP [dm3] 3R_11779018_SNP [dm6]	T	C	1.146e^-4	0.674	UTR_5_PRIME l_3_neo38 UPSTREAM l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	7135916	2L_7135916_SNP [dm3] 2L_7135916_SNP [dm6]	T	C	1.146e^-4	0.674	INTRON Pvf3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	18251976	2L_18251976_SNP [dm3] 2L_18251976_SNP [dm6]	A	G	1.148e^-4	0.674	DOWNSTREAM CG43406 INTRON CG42750 & 1 other
3R	9060960	3R_9060960_SNP [dm3] 3R_13235238_SNP [dm6]	C	A	1.149e^-4	0.674	INTRON Ace
3L	15705539	3L_15705539_SNP [dm3] 3L_15712439_SNP [dm6]	T	G	1.154e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	10201044	3R_10201044_DEL [dm3] 3R_14375322_DEL [dm6]	AATTG	A	1.156e^-4	0.674	DOWNSTREAM CR44943 INTERGENIC
2L	19378759	2L_19378759_SNP [dm3] 2L_19378759_SNP [dm6]	G	A	1.158e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	18251820	2L_18251820_SNP [dm3] 2L_18251820_SNP [dm6]	C	G	1.160e^-4	0.674	UTR_3_PRIME CG43406 INTRON CG42750 & 1 other
2L	18262410	2L_18262410_SNP [dm3] 2L_18262410_SNP [dm6]	C	T	1.163e^-4	0.674	UPSTREAM CR44901 INTRON CG42750
2L	11078055	2L_11078055_SNP [dm3] 2L_11078055_SNP [dm6]	G	A	1.163e^-4	0.674	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	1777389	3R_1777389_SNP [dm3] 3R_5951667_SNP [dm6]	C	A	1.165e^-4	0.674	INTRON CG34113
3R	9079064	3R_9079064_SNP [dm3] 3R_13253342_SNP [dm6]	T	A	1.168e^-4	0.674	INTRON Ace
3L	11193068	3L_11193068_SNP [dm3] 3L_11199968_SNP [dm6]	G	A	1.170e^-4	0.674	INTRON Plod & 1 other
3L	13221229	3L_13221229_SNP [dm3] 3L_13228129_SNP [dm6]	G	A	1.177e^-4	0.674	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	3118171	2L_3118171_SNP [dm3] 2L_3118171_SNP [dm6]	T	C	1.178e^-4	0.674	INTRON toc
X	9063427	X_9063427_INS [dm3] X_9169394_INS [dm6]	C	CCAAATGC	1.182e^-4	0.674	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4930090	2L_4930090_SNP [dm3] 2L_4930090_SNP [dm6]	G	C	1.183e^-4	0.674	INTRON hoe1
3R	9095204	3R_9095204_SNP [dm3] 3R_13269482_SNP [dm6]	A	G	1.184e^-4	0.674	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
2L	14768883	2L_14768883_INS [dm3] 2L_14768883_INS [dm6]	A	GGAACTTTGATCTCCCACAG...	1.192e^-4	0.674	INTERGENIC
2L	19424420	2L_19424420_SNP [dm3] 2L_19424420_SNP [dm6]	T	G	1.194e^-4	0.674	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10201043	3R_10201043_SNP [dm3] 3R_14375321_SNP [dm6]	C	T	1.195e^-4	0.674	DOWNSTREAM CR44943 INTERGENIC
2L	18262383	2L_18262383_SNP [dm3] 2L_18262383_SNP [dm6]	T	C	1.201e^-4	0.674	UPSTREAM CR44901 INTRON CG42750
2R	13203027	2R_13203027_SNP [dm3] 2R_17315522_SNP [dm6]	A	T	1.208e^-4	0.674	INTRON mbl
2R	17443774	2R_17443774_SNP [dm3] 2R_21556269_SNP [dm6]	C	T	1.211e^-4	0.674	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5603066	2L_5603066_SNP [dm3] 2L_5603066_SNP [dm6]	C	G	1.212e^-4	0.674	NON_SYNONYMOUS_CODING CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16090945	X_16090945_SNP [dm3] X_16196912_SNP [dm6]	T	C	1.214e^-4	0.674	INTERGENIC
3L	5758619	3L_5758619_SNP [dm3] 3L_5765519_SNP [dm6]	A	C	1.218e^-4	0.674	UTR_5_PRIME CG10576 UPSTREAM Txl & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5620681	2L_5620681_SNP [dm3] 2L_5620681_SNP [dm6]	A	T	1.221e^-4	0.674	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2R	5977274	2R_5977274_SNP [dm3] 2R_10089769_SNP [dm6]	C	G	1.223e^-4	0.674	INTRON CG2269
X	3055355	X_3055355_SNP [dm3] X_3161322_SNP [dm6]	A	G	1.226e^-4	0.674	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19711418	3R_19711418_SNP [dm3] 3R_23885696_SNP [dm6]	T	A	1.229e^-4	0.674	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6377488	3L_6377488_SNP [dm3] 3L_6384388_SNP [dm6]	T	C	1.233e^-4	0.674	INTERGENIC
3L	9750409	3L_9750409_SNP [dm3] 3L_9757309_SNP [dm6]	G	C	1.236e^-4	0.674	INTRON CG42268
2L	14766546	2L_14766546_SNP [dm3] 2L_14766546_SNP [dm6]	C	A	1.238e^-4	0.674	SYNONYMOUS_CODING CG4701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14818166	2L_14818166_SNP [dm3] 2L_14818166_SNP [dm6]	C	A	1.240e^-4	0.674	INTERGENIC
3R	21584825	3R_21584825_SNP [dm3] 3R_25759103_SNP [dm6]	G	A	1.240e^-4	0.674	NON_SYNONYMOUS_CODING LpR1 INTRON LpR1
3L	4655276	3L_4655276_SNP [dm3] 3L_4655276_SNP [dm6]	C	T	1.244e^-4	0.674	INTRON axo
3L	9750414	3L_9750414_SNP [dm3] 3L_9757314_SNP [dm6]	C	T	1.245e^-4	0.674	INTRON CG42268
2L	19423889	2L_19423889_SNP [dm3] 2L_19423889_SNP [dm6]	G	C	1.250e^-4	0.674	UPSTREAM CG16771 & 2 others INTRON Pax	TF binding site mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	19416766	2L_19416766_SNP [dm3] 2L_19416766_SNP [dm6]	C	T	1.253e^-4	0.674	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
2L	8336060	2L_8336060_SNP [dm3] 2L_8336060_SNP [dm6]	C	A	1.257e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16901371	3R_16901371_SNP [dm3] 3R_21075649_SNP [dm6]	C	G	1.262e^-4	0.674	INTRON dmrt93B
3R	22292360	3R_22292360_SNP [dm3] 3R_26466638_SNP [dm6]	A	T	1.263e^-4	0.674	UTR_5_PRIME CG5455
3L	20120237	3L_20120237_SNP [dm3] 3L_20127137_SNP [dm6]	C	T	1.264e^-4	0.674	UPSTREAM CG7365 INTRON CG7365
X	13456941	X_13456941_SNP [dm3] X_13562908_SNP [dm6]	G	A	1.264e^-4	0.674	UTR_3_PRIME CG32633 UPSTREAM Tango13 DOWNSTREAM CG32633
3L	13674890	3L_13674890_SNP [dm3] 3L_13681790_SNP [dm6]	A	G	1.273e^-4	0.674	INTRON bru-3
3R	24661240	3R_24661240_SNP [dm3] 3R_28835518_SNP [dm6]	C	G	1.278e^-4	0.674	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17899317	3L_17899317_SNP [dm3] 3L_17906217_SNP [dm6]	T	C	1.279e^-4	0.674	INTRON Prestin
2R	14955549	2R_14955549_SNP [dm3] 2R_19068044_SNP [dm6]	C	A	1.285e^-4	0.674	INTRON 5-HT1A
X	13456675	X_13456675_SNP [dm3] X_13562642_SNP [dm6]	C	G	1.286e^-4	0.674	SYNONYMOUS_CODING CG32633	TF binding site mE1_TFBS_chinmo
2L	3938459	2L_3938459_SNP [dm3] 2L_3938459_SNP [dm6]	T	G	1.286e^-4	0.674	INTRON fred
3L	6579098	3L_6579098_SNP [dm3] 3L_6585998_SNP [dm6]	G	A	1.288e^-4	0.674	INTRON CG18769 & 1 other
3L	1253135	3L_1253135_SNP [dm3] 3L_1253135_SNP [dm6]	C	A	1.291e^-4	0.674	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15915786	3L_15915786_SNP [dm3] 3L_15922686_SNP [dm6]	G	T	1.303e^-4	0.678	INTRON sff
3R	16589149	3R_16589149_SNP [dm3] 3R_20763427_SNP [dm6]	C	A	1.306e^-4	0.678	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4858605	X_4858605_SNP [dm3] X_4964572_SNP [dm6]	T	A	1.318e^-4	0.678	INTRON CR44833
X	13456920	X_13456920_SNP [dm3] X_13562887_SNP [dm6]	C	T	1.319e^-4	0.678	UTR_3_PRIME CG32633 UPSTREAM Tango13 DOWNSTREAM CG32633
2L	15867656	2L_15867656_SNP [dm3] 2L_15867656_SNP [dm6]	C	T	1.322e^-4	0.678	INTERGENIC
3R	14690732	3R_14690732_SNP [dm3] 3R_18865010_SNP [dm6]	T	C	1.326e^-4	0.678	INTERGENIC
2R	16553814	2R_16553814_SNP [dm3] 2R_20666309_SNP [dm6]	T	G	1.326e^-4	0.678	UPSTREAM Fem-1 INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7134969	2L_7134969_SNP [dm3] 2L_7134969_SNP [dm6]	C	A	1.336e^-4	0.678	UPSTREAM Pvf3 INTRON Pvf3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10740570	3L_10740570_SNP [dm3] 3L_10747470_SNP [dm6]	C	G	1.339e^-4	0.678	INTERGENIC
2L	19378740	2L_19378740_SNP [dm3] 2L_19378740_SNP [dm6]	G	A	1.341e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14036715	2L_14036715_INS [dm3] 2L_14036715_INS [dm6]	C	CC	1.342e^-4	0.678	EXON CR45284
3R	22607800	3R_22607800_SNP [dm3] 3R_26782078_SNP [dm6]	T	C	1.344e^-4	0.678	INTERGENIC
2L	2500983	2L_2500983_SNP [dm3] 2L_2500983_SNP [dm6]	T	G	1.348e^-4	0.678	INTERGENIC
3R	19760671	3R_19760671_SNP [dm3] 3R_23934949_SNP [dm6]	G	A	1.349e^-4	0.678	INTRON CG5854	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23632847	3R_23632847_SNP [dm3] 3R_27807125_SNP [dm6]	T	C	1.358e^-4	0.68	INTRON CG34353
3L	17328787	3L_17328787_SNP [dm3] 3L_17335687_SNP [dm6]	G	C	1.360e^-4	0.68	DOWNSTREAM CR44564 INTERGENIC
3R	9631347	3R_9631347_SNP [dm3] 3R_13805625_SNP [dm6]	G	T	1.367e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19404850	3L_19404850_SNP [dm3] 3L_19411750_SNP [dm6]	T	A	1.371e^-4	0.68	INTRON CG32206
2L	6472713	2L_6472713_SNP [dm3] 2L_6472713_SNP [dm6]	T	G	1.376e^-4	0.68	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl
2L	16627727	2L_16627727_SNP [dm3] 2L_16627727_SNP [dm6]	G	A	1.377e^-4	0.68	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7135890	2L_7135890_SNP [dm3] 2L_7135890_SNP [dm6]	T	G	1.380e^-4	0.68	INTRON Pvf3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9583290	3L_9583290_SNP [dm3] 3L_9590190_SNP [dm6]	A	T	1.382e^-4	0.68	INTRON CG42673
3L	14150724	3L_14150724_SNP [dm3] 3L_14157624_SNP [dm6]	A	G	1.395e^-4	0.682	INTERGENIC	regulatory region REDfly_CRMs
2L	14769145	2L_14769145_SNP [dm3] 2L_14769145_SNP [dm6]	T	C	1.397e^-4	0.682	INTERGENIC
3R	13874873	3R_13874873_SNP [dm3] 3R_18049151_SNP [dm6]	T	G	1.405e^-4	0.682	UTR_5_PRIME htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17539581	3R_17539581_SNP [dm3] 3R_21713859_SNP [dm6]	T	C	1.412e^-4	0.682	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	19313513	2L_19313513_SNP [dm3] 2L_19313513_SNP [dm6]	G	T	1.414e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14022372	3R_14022372_SNP [dm3] 3R_18196650_SNP [dm6]	C	T	1.420e^-4	0.682	UTR_5_PRIME Ssdp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	2942526	2R_2942526_SNP [dm3] 2R_7055021_SNP [dm6]	G	A	1.426e^-4	0.682	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42En INTRON Tsp42Eo
2R	19120906	2R_19120906_SNP [dm3] 2R_23233383_SNP [dm6]	A	G	1.430e^-4	0.682	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12935099	2R_12935099_SNP [dm3] 2R_17047594_SNP [dm6]	C	T	1.430e^-4	0.682	NON_SYNONYMOUS_CODING CG9642 DOWNSTREAM CG9640
3R	11030804	3R_11030804_SNP [dm3] 3R_15205082_SNP [dm6]	C	T	1.431e^-4	0.682	INTRON Spn88Ea
2L	13117322	2L_13117322_INS [dm3] 2L_13117322_INS [dm6]	A	ATT	1.433e^-4	0.682	INTERGENIC
3R	23019428	3R_23019428_SNP [dm3] 3R_27193706_SNP [dm6]	A	G	1.435e^-4	0.682	INTRON Ser	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	19414283	2L_19414283_SNP [dm3] 2L_19414283_SNP [dm6]	G	A	1.439e^-4	0.682	INTRON Pax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	727605	3L_727605_SNP [dm3] 3L_727605_SNP [dm6]	C	T	1.446e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10721276	3L_10721276_SNP [dm3] 3L_10728176_SNP [dm6]	G	A	1.451e^-4	0.682	INTERGENIC
2L	5090857	2L_5090857_SNP [dm3] 2L_5090857_SNP [dm6]	G	T	1.454e^-4	0.682	INTRON pgant5
3L	3368510	3L_3368510_SNP [dm3] 3L_3368510_SNP [dm6]	C	T	1.456e^-4	0.682	DOWNSTREAM kst INTERGENIC
3L	15142771	3L_15142771_SNP [dm3] 3L_15149671_SNP [dm6]	T	A	1.456e^-4	0.682	UPSTREAM FucTA INTRON FucTA
3R	2660119	3R_2660119_SNP [dm3] 3R_6834397_SNP [dm6]	G	A	1.457e^-4	0.682	INTRON Scr	regulatory region REDfly_CRMs
3L	9583264	3L_9583264_DEL [dm3] 3L_9590164_DEL [dm6]	GTTCCGAAAAACTTTAAACA...	G	1.460e^-4	0.682	INTRON CG42673
2L	14766626	2L_14766626_SNP [dm3] 2L_14766626_SNP [dm6]	G	C	1.463e^-4	0.682	NON_SYNONYMOUS_CODING CG4701	TF binding site mE1_TFBS_cad
2R	11850870	2R_11850870_SNP [dm3] 2R_15963365_SNP [dm6]	T	C	1.469e^-4	0.683	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22292368	3R_22292368_SNP [dm3] 3R_26466646_SNP [dm6]	T	C	1.473e^-4	0.683	UTR_5_PRIME CG5455
2L	12736846	2L_12736846_SNP [dm3] 2L_12736846_SNP [dm6]	C	T	1.477e^-4	0.683	INTRON MRP
2L	9619984	2L_9619984_SNP [dm3] 2L_9619984_SNP [dm6]	G	A	1.488e^-4	0.683	INTRON GlcAT-S
3R	23383833	3R_23383833_SNP [dm3] 3R_27558111_SNP [dm6]	T	C	1.494e^-4	0.683	INTRON Klp98A
2L	11046490	2L_11046490_DEL [dm3] 2L_11046490_DEL [dm6]	AGCATATA	A	1.494e^-4	0.683	INTRON Samuel
3L	10328913	3L_10328913_SNP [dm3] 3L_10335813_SNP [dm6]	A	G	1.495e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	10201029	3R_10201029_SNP [dm3] 3R_14375307_SNP [dm6]	T	A	1.504e^-4	0.683	DOWNSTREAM CR44943 INTERGENIC
2L	10796739	2L_10796739_SNP [dm3] 2L_10796739_SNP [dm6]	G	C	1.505e^-4	0.683	INTRON CG31869
3L	11025844	3L_11025844_SNP [dm3] 3L_11032744_SNP [dm6]	A	G	1.513e^-4	0.683	INTERGENIC
3L	10766157	3L_10766157_SNP [dm3] 3L_10773057_SNP [dm6]	T	C	1.514e^-4	0.683	UTR_3_PRIME CG43245
2L	6356815	2L_6356815_SNP [dm3] 2L_6356815_SNP [dm6]	C	T	1.516e^-4	0.683	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19427575	2L_19427575_SNP [dm3] 2L_19427575_SNP [dm6]	A	C	1.518e^-4	0.683	NON_SYNONYMOUS_CODING CG16771 UPSTREAM Pax INTRON CG13085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14008918	X_14008918_SNP [dm3] X_14114885_SNP [dm6]	T	G	1.527e^-4	0.683	INTRON CR44657	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9309576	2R_9309576_SNP [dm3] 2R_13422071_SNP [dm6]	A	C	1.533e^-4	0.683	DOWNSTREAM CG30060 INTRON CG42321
2L	14923388	2L_14923388_SNP [dm3] 2L_14923388_SNP [dm6]	C	T	1.533e^-4	0.683	INTRON CG42313
3L	9637974	3L_9637974_SNP [dm3] 3L_9644874_SNP [dm6]	A	T	1.539e^-4	0.683	SYNONYMOUS_CODING CG33696 INTRON fry	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17542691	3R_17542691_SNP [dm3] 3R_21716969_SNP [dm6]	T	G	1.539e^-4	0.683	INTRON CG31176
2R	19381919	2R_19381919_SNP [dm3] 2R_23494396_SNP [dm6]	G	A	1.541e^-4	0.683	INTERGENIC
3R	16589121	3R_16589121_SNP [dm3] 3R_20763399_SNP [dm6]	A	G	1.547e^-4	0.683	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14855811	X_14855811_DEL [dm3] X_14961778_DEL [dm6]	AA	A	1.547e^-4	0.683	INTRON eag	TF binding site mE1_TFBS_chinmo
2L	19863819	2L_19863819_SNP [dm3] 2L_19863819_SNP [dm6]	T	C	1.548e^-4	0.683	INTRON sick	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	18355585	2L_18355585_SNP [dm3] 2L_18355585_SNP [dm6]	C	G	1.550e^-4	0.683	DOWNSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11636504	3L_11636504_SNP [dm3] 3L_11643404_SNP [dm6]	C	A	1.561e^-4	0.683	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
2R	6292467	2R_6292467_SNP [dm3] 2R_10404962_SNP [dm6]	C	T	1.564e^-4	0.683	INTRON CG42732
2L	16715980	2L_16715980_SNP [dm3] 2L_16715980_SNP [dm6]	A	G	1.573e^-4	0.683	UTR_5_PRIME CG31808 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	13184324	3R_13184324_DEL [dm3] 3R_17358602_DEL [dm6]	CCAC	C	1.574e^-4	0.683	INTRON beat-IIa
3R	10091320	3R_10091320_SNP [dm3] 3R_14265598_SNP [dm6]	T	C	1.575e^-4	0.683	INTRON trx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6647112	3L_6647112_SNP [dm3] 3L_6654012_SNP [dm6]	C	G	1.577e^-4	0.683	INTERGENIC
3R	11647270	3R_11647270_SNP [dm3] 3R_15821548_SNP [dm6]	A	C	1.578e^-4	0.683	INTRON alpha-Man-IIb	TF binding site mE1_TFBS_cad
2L	17988998	2L_17988998_SNP [dm3] 2L_17988998_SNP [dm6]	G	A	1.583e^-4	0.683	DOWNSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_cad
X	16137812	X_16137812_SNP [dm3] X_16243779_SNP [dm6]	A	T	1.589e^-4	0.683	INTERGENIC
2L	14036713	2L_14036713_SNP [dm3] 2L_14036713_SNP [dm6]	C	T	1.589e^-4	0.683	EXON CR45284
3L	16883785	3L_16883785_SNP [dm3] 3L_16890685_SNP [dm6]	T	C	1.593e^-4	0.683	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13117321	2L_13117321_SNP [dm3] 2L_13117321_SNP [dm6]	T	A	1.595e^-4	0.683	INTERGENIC
X	13141992	X_13141992_SNP [dm3] X_13247959_SNP [dm6]	A	G	1.596e^-4	0.683	INTRON mew
2R	14955775	2R_14955775_SNP [dm3] 2R_19068270_SNP [dm6]	C	T	1.613e^-4	0.689	INTRON 5-HT1A
3R	25535580	3R_25535580_SNP [dm3] 3R_29709858_SNP [dm6]	G	T	1.621e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14397929	3L_14397929_SNP [dm3] 3L_14404829_SNP [dm6]	G	A	1.651e^-4	0.693	SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14687115	3R_14687115_SNP [dm3] 3R_18861393_SNP [dm6]	A	T	1.654e^-4	0.693	INTERGENIC
2L	11046470	2L_11046470_SNP [dm3] 2L_11046470_SNP [dm6]	C	A	1.657e^-4	0.693	INTRON Samuel
X	8824213	X_8824213_SNP [dm3] X_8930180_SNP [dm6]	C	T	1.659e^-4	0.693	INTRON rdgA
2L	5723591	2L_5723591_SNP [dm3] 2L_5723591_SNP [dm6]	T	G	1.662e^-4	0.693	INTRON sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
2L	17878156	2L_17878156_SNP [dm3] 2L_17878156_SNP [dm6]	T	G	1.666e^-4	0.693	INTERGENIC
2R	19121095	2R_19121095_SNP [dm3] 2R_23233572_SNP [dm6]	C	T	1.667e^-4	0.693	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad
3L	6288882	3L_6288882_SNP [dm3] 3L_6295782_SNP [dm6]	C	G	1.669e^-4	0.693	INTERGENIC
2R	19055383	2R_19055383_SNP [dm3] 2R_23167860_SNP [dm6]	T	G	1.678e^-4	0.693	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11247823	2R_11247823_SNP [dm3] 2R_15360318_SNP [dm6]	C	T	1.679e^-4	0.693	INTRON unc-5
2L	11245210	2L_11245210_SNP [dm3] 2L_11245210_SNP [dm6]	G	A	1.681e^-4	0.693	INTRON ab
3L	4650826	3L_4650826_SNP [dm3] 3L_4650826_SNP [dm6]	A	T	1.683e^-4	0.693	DOWNSTREAM CG32238 INTRON axo
3R	9104769	3R_9104769_SNP [dm3] 3R_13279047_SNP [dm6]	A	G	1.684e^-4	0.693	UPSTREAM CG8630 INTERGENIC
3R	9079042	3R_9079042_SNP [dm3] 3R_13253320_SNP [dm6]	A	G	1.691e^-4	0.693	INTRON Ace
2L	964682	2L_964682_SNP [dm3] 2L_964682_SNP [dm6]	T	A	1.692e^-4	0.693	INTERGENIC
2L	10895521	2L_10895521_DEL [dm3] 2L_10895521_DEL [dm6]	TA	T	1.697e^-4	0.693	UPSTREAM CR44491 INTERGENIC
3L	18139340	3L_18139340_SNP [dm3] 3L_18146240_SNP [dm6]	T	G	1.699e^-4	0.693	DOWNSTREAM gk INTERGENIC
3L	10444512	3L_10444512_SNP [dm3] 3L_10451412_SNP [dm6]	A	G	1.702e^-4	0.693	INTERGENIC
3R	9840665	3R_9840665_SNP [dm3] 3R_14014943_SNP [dm6]	G	C	1.714e^-4	0.693	INTRON rdx
3R	20902681	3R_20902681_SNP [dm3] 3R_25076959_SNP [dm6]	T	G	1.718e^-4	0.693	DOWNSTREAM CG11920 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13229474	3L_13229474_SNP [dm3] 3L_13236374_SNP [dm6]	T	G	1.720e^-4	0.693	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26781627	3R_26781627_SNP [dm3] 3R_30955905_SNP [dm6]	C	T	1.723e^-4	0.693	INTERGENIC
3L	5460205	3L_5460205_SNP [dm3] 3L_5467105_SNP [dm6]	T	C	1.725e^-4	0.693	INTERGENIC
3L	16225254	3L_16225254_SNP [dm3] 3L_16232154_SNP [dm6]	T	C	1.735e^-4	0.693	UTR_5_PRIME MED10 UPSTREAM PDCD-5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17988880	2L_17988880_SNP [dm3] 2L_17988880_SNP [dm6]	C	G	1.737e^-4	0.693	DOWNSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2488087	2L_2488087_SNP [dm3] 2L_2488087_SNP [dm6]	T	A	1.740e^-4	0.693	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3R	9104766	3R_9104766_SNP [dm3] 3R_13279044_SNP [dm6]	G	A	1.742e^-4	0.693	UPSTREAM CG8630 INTERGENIC
2R	2431346	2R_2431346_SNP [dm3] 2R_6543841_SNP [dm6]	G	C	1.744e^-4	0.693	INTRON jing	TF binding site BDTNP1_TFBS_dl
X	21295547	X_21295547_SNP [dm3] X_21424520_SNP [dm6]	C	T	1.746e^-4	0.693	UTR_3_PRIME CG42343	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10467335	3L_10467335_SNP [dm3] 3L_10474235_SNP [dm6]	G	C	1.746e^-4	0.693	INTERGENIC
3L	13225035	3L_13225035_SNP [dm3] 3L_13231935_SNP [dm6]	C	T	1.747e^-4	0.693	INTRON caps
3R	11601442	3R_11601442_SNP [dm3] 3R_15775720_SNP [dm6]	C	T	1.749e^-4	0.693	UPSTREAM CR45207 INTRON CG4525
2L	19379890	2L_19379890_SNP [dm3] 2L_19379890_SNP [dm6]	C	T	1.755e^-4	0.693	INTERGENIC
2L	19379903	2L_19379903_SNP [dm3] 2L_19379903_SNP [dm6]	G	C	1.755e^-4	0.693	INTERGENIC
2R	2942547	2R_2942547_SNP [dm3] 2R_7055042_SNP [dm6]	T	C	1.755e^-4	0.693	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42En INTRON Tsp42Eo
3L	6004962	3L_6004962_SNP [dm3] 3L_6011862_SNP [dm6]	A	G	1.780e^-4	0.697	UPSTREAM alphaKap4 INTRON PVRAP
2L	20301105	2L_20301105_SNP [dm3] 2L_20301105_SNP [dm6]	A	G	1.786e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1951846	X_1951846_SNP [dm3] X_2057813_SNP [dm6]	T	A	1.786e^-4	0.697	INTRON Sik2	TF binding site mE1_TFBS_chinmo
2L	14748920	2L_14748920_SNP [dm3] 2L_14748920_SNP [dm6]	T	A	1.788e^-4	0.697	INTERGENIC
3R	7604546	3R_7604546_SNP [dm3] 3R_11778824_SNP [dm6]	C	A	1.788e^-4	0.697	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	13772190	2R_13772190_SNP [dm3] 2R_17884685_SNP [dm6]	A	C	1.796e^-4	0.697	INTRON Elk
2L	3118092	2L_3118092_DEL [dm3] 2L_3118092_DEL [dm6]	TT	A	1.797e^-4	0.697	INTRON toc
2L	19430220	2L_19430220_SNP [dm3] 2L_19430220_SNP [dm6]	T	A	1.799e^-4	0.697	UTR_3_PRIME CG13085 UPSTREAM CG9987 DOWNSTREAM CG16771	TF binding site mE1_TFBS_bab1
3R	9104834	3R_9104834_SNP [dm3] 3R_13279112_SNP [dm6]	C	T	1.803e^-4	0.697	UPSTREAM CG8630 INTERGENIC
3L	10721256	3L_10721256_SNP [dm3] 3L_10728156_SNP [dm6]	G	T	1.815e^-4	0.697	INTERGENIC
3L	10861207	3L_10861207_SNP [dm3] 3L_10868107_SNP [dm6]	T	G	1.819e^-4	0.697	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19378636	2L_19378636_SNP [dm3] 2L_19378636_SNP [dm6]	T	A	1.826e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	13624788	X_13624788_SNP [dm3] X_13730755_SNP [dm6]	G	A	1.827e^-4	0.697	INTRON g	TF binding site BDTNP1_TFBS_dl
2L	11078009	2L_11078009_SNP [dm3] 2L_11078009_SNP [dm6]	C	G	1.833e^-4	0.697	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
2L	2681036	2L_2681036_SNP [dm3] 2L_2681036_SNP [dm6]	T	C	1.837e^-4	0.697	INTRON CG31690
2L	964121	2L_964121_SNP [dm3] 2L_964121_SNP [dm6]	G	T	1.838e^-4	0.697	INTERGENIC
3R	6242887	3R_6242887_SNP [dm3] 3R_10417165_SNP [dm6]	A	T	1.839e^-4	0.697	INTERGENIC
3L	6983996	3L_6983996_SNP [dm3] 3L_6990896_SNP [dm6]	C	T	1.841e^-4	0.697	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	9102454	3R_9102454_SNP [dm3] 3R_13276732_SNP [dm6]	A	C	1.841e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	5765937	3R_5765937_SNP [dm3] 3R_9940215_SNP [dm6]	C	A	1.843e^-4	0.697	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19380943	2L_19380943_SNP [dm3] 2L_19380943_SNP [dm6]	A	G	1.850e^-4	0.697	UTR_5_PRIME CG17350
2L	2505572	2L_2505572_SNP [dm3] 2L_2505572_SNP [dm6]	A	G	1.853e^-4	0.697	INTERGENIC
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	1.855e^-4	0.697	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4651459	3L_4651459_SNP [dm3] 3L_4651459_SNP [dm6]	C	T	1.855e^-4	0.697	INTRON axo
2L	10895516	2L_10895516_SNP [dm3] 2L_10895516_SNP [dm6]	A	T	1.859e^-4	0.697	UPSTREAM CR44491 INTERGENIC
2L	11191308	2L_11191308_SNP [dm3] 2L_11191308_SNP [dm6]	G	A	1.865e^-4	0.697	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14008860	X_14008860_SNP [dm3] X_14114827_SNP [dm6]	C	G	1.870e^-4	0.697	INTRON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16588409	3R_16588409_SNP [dm3] 3R_20762687_SNP [dm6]	C	T	1.871e^-4	0.697	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	2149399	3L_2149399_SNP [dm3] 3L_2149399_SNP [dm6]	C	G	1.877e^-4	0.697	INTRON zormin
2R	17185357	2R_17185357_DEL [dm3] 2R_21297852_DEL [dm6]	GAA	G	1.881e^-4	0.697	UPSTREAM CG42672 INTRON CG42672 EXON CR44724
X	13456825	X_13456825_SNP [dm3] X_13562792_SNP [dm6]	T	C	1.882e^-4	0.697	SYNONYMOUS_CODING CG32633
3L	16225213	3L_16225213_SNP [dm3] 3L_16232113_SNP [dm6]	G	T	1.898e^-4	0.699	UTR_5_PRIME MED10 UPSTREAM PDCD-5 DOWNSTREAM CG5027	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9721601	3L_9721601_SNP [dm3] 3L_9728501_SNP [dm6]	T	C	1.898e^-4	0.699	SPLICE_SITE_REGION Naa60 INTRON Naa60	TF binding site mE1_TFBS_HSA
3R	1777068	3R_1777068_SNP [dm3] 3R_5951346_SNP [dm6]	T	A	1.905e^-4	0.699	INTRON CG34113
3R	1777096	3R_1777096_SNP [dm3] 3R_5951374_SNP [dm6]	T	A	1.905e^-4	0.699	INTRON CG34113
2L	18374737	2L_18374737_SNP [dm3] 2L_18374737_SNP [dm6]	A	G	1.906e^-4	0.699	INTRON Fas3
3L	16218817	3L_16218817_SNP [dm3] 3L_16225717_SNP [dm6]	G	A	1.915e^-4	0.7	DOWNSTREAM l_3_72Dn INTERGENIC
2L	19427013	2L_19427013_SNP [dm3] 2L_19427013_SNP [dm6]	C	T	1.918e^-4	0.7	UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26762587	3R_26762587_SNP [dm3] 3R_30936865_SNP [dm6]	T	C	1.922e^-4	0.7	SYNONYMOUS_CODING CG15550 UPSTREAM CG15549	TF binding site mE1_TFBS_chinmo
3L	18011157	3L_18011157_SNP [dm3] 3L_18018057_SNP [dm6]	G	A	1.924e^-4	0.7	INTRON Eip75B
2L	19433221	2L_19433221_SNP [dm3] 2L_19433221_SNP [dm6]	T	C	1.930e^-4	0.701	DOWNSTREAM CG9987 INTRON Rab9	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8347434	2L_8347434_SNP [dm3] 2L_8347434_SNP [dm6]	G	A	1.937e^-4	0.703	INTRON CG7778
X	16137793	X_16137793_DEL [dm3] X_16243760_DEL [dm6]	ACACTCCGGGCTAAAATG...	T	1.943e^-4	0.703	INTERGENIC
2R	6292254	2R_6292254_SNP [dm3] 2R_10404749_SNP [dm6]	C	G	1.952e^-4	0.703	INTRON CG42732
3L	4650827	3L_4650827_SNP [dm3] 3L_4650827_SNP [dm6]	A	T	1.955e^-4	0.703	DOWNSTREAM CG32238 INTRON axo
2L	8705500	2L_8705500_SNP [dm3] 2L_8705500_SNP [dm6]	A	C	1.956e^-4	0.703	UPSTREAM CG9314 DOWNSTREAM CR44992 INTRON Hnf4
2L	1134332	2L_1134332_SNP [dm3] 2L_1134332_SNP [dm6]	A	T	1.956e^-4	0.703	UPSTREAM CG4577 & 1 other INTERGENIC
3R	15152314	3R_15152314_SNP [dm3] 3R_19326592_SNP [dm6]	C	A	1.967e^-4	0.704	UPSTREAM Dl DOWNSTREAM CR44175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	9609534	2L_9609534_DEL [dm3] 2L_9609534_DEL [dm6]	GAAAG	G	1.969e^-4	0.704	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	15187042	3R_15187042_SNP [dm3] 3R_19361320_SNP [dm6]	G	T	1.972e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	9067174	3R_9067174_SNP [dm3] 3R_13241452_SNP [dm6]	T	A	1.975e^-4	0.704	INTRON Ace
2R	7145669	2R_7145669_SNP [dm3] 2R_11258164_SNP [dm6]	A	G	1.984e^-4	0.706	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Ec
3L	10739914	3L_10739914_SNP [dm3] 3L_10746814_SNP [dm6]	A	G	2.001e^-4	0.711	INTERGENIC
2L	19359361	2L_19359361_SNP [dm3] 2L_19359361_SNP [dm6]	T	A	2.018e^-4	0.713	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6472671	2L_6472671_SNP [dm3] 2L_6472671_SNP [dm6]	G	A	2.029e^-4	0.713	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl
3R	21579876	3R_21579876_SNP [dm3] 3R_25754154_SNP [dm6]	T	G	2.031e^-4	0.713	INTRON LpR1
2L	14768282	2L_14768282_SNP [dm3] 2L_14768282_SNP [dm6]	C	T	2.038e^-4	0.713	INTERGENIC
2R	17443878	2R_17443878_SNP [dm3] 2R_21556373_SNP [dm6]	T	C	2.054e^-4	0.713	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9840309	3R_9840309_SNP [dm3] 3R_14014587_SNP [dm6]	T	C	2.059e^-4	0.713	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16774089	3R_16774089_SNP [dm3] 3R_20948367_SNP [dm6]	G	T	2.063e^-4	0.713	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	11636305	3L_11636305_SNP [dm3] 3L_11643205_SNP [dm6]	G	A	2.071e^-4	0.713	DOWNSTREAM CG32091 INTRON CG6071
2R	17261925	2R_17261925_SNP [dm3] 2R_21374420_SNP [dm6]	A	G	2.073e^-4	0.713	INTRON cv-2
3L	18843132	3L_18843132_SNP [dm3] 3L_18850032_SNP [dm6]	T	C	2.074e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	19415947	2L_19415947_SNP [dm3] 2L_19415947_SNP [dm6]	G	T	2.074e^-4	0.713	INTRON Pax	TF binding site mE1_TFBS_HSA
3L	20117284	3L_20117284_SNP [dm3] 3L_20124184_SNP [dm6]	G	A	2.077e^-4	0.713	DOWNSTREAM CG7365 INTERGENIC
2L	964108	2L_964108_SNP [dm3] 2L_964108_SNP [dm6]	T	C	2.081e^-4	0.713	INTERGENIC
2L	964137	2L_964137_SNP [dm3] 2L_964137_SNP [dm6]	A	G	2.081e^-4	0.713	INTERGENIC
3R	9157441	3R_9157441_SNP [dm3] 3R_13331719_SNP [dm6]	A	G	2.085e^-4	0.713	INTRON PK2-R2
3L	9750418	3L_9750418_SNP [dm3] 3L_9757318_SNP [dm6]	C	A	2.085e^-4	0.713	INTRON CG42268
2L	10397672	2L_10397672_SNP [dm3] 2L_10397672_SNP [dm6]	C	A	2.087e^-4	0.713	UPSTREAM Cnot4 INTRON Cnot4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
3R	16858938	3R_16858938_SNP [dm3] 3R_21033216_SNP [dm6]	T	C	2.094e^-4	0.713	SYNONYMOUS_CODING Dhc93AB
2R	6615654	2R_6615654_SNP [dm3] 2R_10728149_SNP [dm6]	A	G	2.104e^-4	0.713	DOWNSTREAM CG12309 INTRON Rab3
3L	6919209	3L_6919209_SNP [dm3] 3L_6926109_SNP [dm6]	C	T	2.105e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7002786	3R_7002786_SNP [dm3] 3R_11177064_SNP [dm6]	C	G	2.112e^-4	0.713	SYNONYMOUS_CODING Ugt86Dh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10081604	3L_10081604_DEL [dm3] 3L_10088504_DEL [dm6]	TT	T	2.116e^-4	0.713	INTRON dpr6 & 1 other
3L	11154248	3L_11154248_SNP [dm3] 3L_11161148_SNP [dm6]	T	A	2.120e^-4	0.713	INTRON CG32082
2R	6621527	2R_6621527_SNP [dm3] 2R_10734022_SNP [dm6]	T	C	2.122e^-4	0.713	INTRON CG7220
3R	11645071	3R_11645071_SNP [dm3] 3R_15819349_SNP [dm6]	C	T	2.125e^-4	0.713	SYNONYMOUS_CODING alpha-Man-IIb	TF binding site mE1_TFBS_cad
3L	16884396	3L_16884396_SNP [dm3] 3L_16891296_SNP [dm6]	A	T	2.127e^-4	0.713	UTR_5_PRIME Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3522511	3L_3522511_SNP [dm3] 3L_3522511_SNP [dm6]	G	A	2.129e^-4	0.713	DOWNSTREAM CR45043 INTRON Eip63E
2L	19439624	2L_19439624_SNP [dm3] 2L_19439624_SNP [dm6]	A	T	2.129e^-4	0.713	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12664690	2L_12664690_SNP [dm3] 2L_12664690_SNP [dm6]	T	C	2.130e^-4	0.713	INTRON pdm2
2L	14768888	2L_14768888_SNP [dm3] 2L_14768888_SNP [dm6]	A	T	2.138e^-4	0.713	INTERGENIC
2L	917276	2L_917276_SNP [dm3] 2L_917276_SNP [dm6]	C	T	2.139e^-4	0.713	SYNONYMOUS_CODING GluRIIC
2L	917285	2L_917285_SNP [dm3] 2L_917285_SNP [dm6]	G	A	2.139e^-4	0.713	SYNONYMOUS_CODING GluRIIC
2R	19055411	2R_19055411_SNP [dm3] 2R_23167888_SNP [dm6]	C	T	2.140e^-4	0.713	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13672674	3L_13672674_SNP [dm3] 3L_13679574_SNP [dm6]	C	A	2.146e^-4	0.713	INTRON bru-3
3L	15258096	3L_15258096_SNP [dm3] 3L_15264996_SNP [dm6]	G	A	2.147e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14767929	2L_14767929_INS [dm3] 2L_14767929_INS [dm6]	T	TTTAT	2.150e^-4	0.713	DOWNSTREAM CG4701 INTERGENIC
2L	19884952	2L_19884952_SNP [dm3] 2L_19884952_SNP [dm6]	A	G	2.160e^-4	0.713	INTRON sick
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	2.166e^-4	0.713	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2488085	2L_2488085_SNP [dm3] 2L_2488085_SNP [dm6]	C	G	2.168e^-4	0.713	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	12935343	2R_12935343_SNP [dm3] 2R_17047838_SNP [dm6]	C	G	2.178e^-4	0.713	SYNONYMOUS_CODING CG9642	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8370159	X_8370159_SNP [dm3] X_8476126_SNP [dm6]	A	G	2.180e^-4	0.713	UPSTREAM Cp7Fc DOWNSTREAM Cp7Fb INTRON CG33223
2L	14409275	2L_14409275_SNP [dm3] 2L_14409275_SNP [dm6]	C	A	2.183e^-4	0.713	UTR_5_PRIME elB UPSTREAM CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6129928	3L_6129928_SNP [dm3] 3L_6136828_SNP [dm6]	T	G	2.186e^-4	0.713	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
2L	10801420	2L_10801420_SNP [dm3] 2L_10801420_SNP [dm6]	T	A	2.189e^-4	0.713	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
X	13700262	X_13700262_SNP [dm3] X_13806229_SNP [dm6]	A	G	2.189e^-4	0.713	INTRON inaE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2423069	3R_2423069_SNP [dm3] 3R_6597347_SNP [dm6]	A	C	2.198e^-4	0.713	NON_SYNONYMOUS_CODING CG1138
X	16165177	X_16165177_SNP [dm3] X_16271144_SNP [dm6]	G	T	2.200e^-4	0.713	UPSTREAM Mfe2 INTRON kat80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	13672759	3L_13672759_SNP [dm3] 3L_13679659_SNP [dm6]	T	C	2.201e^-4	0.713	INTRON bru-3
2L	19426694	2L_19426694_SNP [dm3] 2L_19426694_SNP [dm6]	A	G	2.201e^-4	0.713	UTR_5_PRIME CG16771 & 1 other UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	4229923	2R_4229923_SNP [dm3] 2R_8342418_SNP [dm6]	G	A	2.205e^-4	0.713	INTRON pdm3	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16201618	3L_16201618_SNP [dm3] 3L_16208518_SNP [dm6]	C	A	2.207e^-4	0.713	INTERGENIC
2L	10616071	2L_10616071_SNP [dm3] 2L_10616071_SNP [dm6]	A	G	2.209e^-4	0.713	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2R	20460529	2R_20460529_SNP [dm3] 2R_24573006_SNP [dm6]	T	C	2.213e^-4	0.713	SYNONYMOUS_CODING CG3511	TF binding site mE1_TFBS_cad
X	3197369	X_3197369_DEL [dm3] X_3303336_DEL [dm6]	TTTTGTG	AGCCA	2.215e^-4	0.713	INTRON dnc
X	21337366	X_21337366_SNP [dm3] X_21466339_SNP [dm6]	T	C	2.231e^-4	0.716	DOWNSTREAM CR45507 INTERGENIC
2L	2528219	2L_2528219_SNP [dm3] 2L_2528219_SNP [dm6]	G	A	2.232e^-4	0.716	INTERGENIC
3L	10464952	3L_10464952_SNP [dm3] 3L_10471852_SNP [dm6]	T	A	2.245e^-4	0.718	INTERGENIC
3R	2660110	3R_2660110_SNP [dm3] 3R_6834388_SNP [dm6]	G	T	2.247e^-4	0.718	INTRON Scr	regulatory region REDfly_CRMs
2L	19434379	2L_19434379_SNP [dm3] 2L_19434379_SNP [dm6]	A	C	2.248e^-4	0.718	INTRON Rab9
2R	1693830	2R_1693830_SNP [dm3] 2R_5806325_SNP [dm6]	T	G	2.253e^-4	0.718	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2528241	2L_2528241_SNP [dm3] 2L_2528241_SNP [dm6]	A	T	2.265e^-4	0.721	INTERGENIC
2R	6636602	2R_6636602_SNP [dm3] 2R_10749097_SNP [dm6]	C	A	2.273e^-4	0.722	INTRON CG33144
2L	5006883	2L_5006883_SNP [dm3] 2L_5006883_SNP [dm6]	C	A	2.289e^-4	0.724	UPSTREAM Rtnl1 INTRON Rtnl1
3L	15609765	3L_15609765_SNP [dm3] 3L_15616665_SNP [dm6]	C	G	2.292e^-4	0.724	INTRON comm3
3R	7604889	3R_7604889_SNP [dm3] 3R_11779167_SNP [dm6]	T	C	2.303e^-4	0.724	UPSTREAM l_3_neo38 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
X	18989756	X_18989756_SNP [dm3] X_19095723_SNP [dm6]	G	A	2.304e^-4	0.724	INTERGENIC
3L	20122496	3L_20122496_SNP [dm3] 3L_20129396_SNP [dm6]	G	T	2.306e^-4	0.724	INTRON gig	TF binding site BDTNP1_TFBS_twi
3R	22745432	3R_22745432_SNP [dm3] 3R_26919710_SNP [dm6]	A	T	2.312e^-4	0.724	INTRON sda	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16586592	3R_16586592_SNP [dm3] 3R_20760870_SNP [dm6]	T	A	2.312e^-4	0.724	INTRON Syp & 1 other	TF binding site mE1_TFBS_sens
3L	13023475	3L_13023475_SNP [dm3] 3L_13030375_SNP [dm6]	A	C	2.316e^-4	0.724	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	4643936	2R_4643936_SNP [dm3] 2R_8756431_SNP [dm6]	T	G	2.319e^-4	0.724	INTRON CG8740	TF binding site mE1_TFBS_chinmo
3L	15787509	3L_15787509_SNP [dm3] 3L_15794409_SNP [dm6]	A	G	2.320e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	4927979	2L_4927979_SNP [dm3] 2L_4927979_SNP [dm6]	A	T	2.321e^-4	0.724	INTRON hoe1
3R	8136115	3R_8136115_SNP [dm3] 3R_12310393_SNP [dm6]	A	G	2.330e^-4	0.724	UPSTREAM CG4066 INTERGENIC
2L	14036752	2L_14036752_INS [dm3] 2L_14036752_INS [dm6]	A	AATTGCCCAA	2.332e^-4	0.724	EXON CR45284
2R	16389238	2R_16389238_SNP [dm3] 2R_20501733_SNP [dm6]	A	T	2.336e^-4	0.724	INTERGENIC	regulatory region REDfly_CRMs
3R	18857077	3R_18857077_SNP [dm3] 3R_23031355_SNP [dm6]	A	G	2.339e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7145777	2R_7145777_SNP [dm3] 2R_11258272_SNP [dm6]	G	A	2.345e^-4	0.724	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Ec
2R	16367884	2R_16367884_SNP [dm3] 2R_20480379_SNP [dm6]	G	T	2.345e^-4	0.724	INTERGENIC
2R	7122276	2R_7122276_SNP [dm3] 2R_11234771_SNP [dm6]	T	C	2.349e^-4	0.724	UPSTREAM CG13227 DOWNSTREAM CG13228 INTERGENIC
3L	17903053	3L_17903053_SNP [dm3] 3L_17909953_SNP [dm6]	C	A	2.357e^-4	0.724	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
2L	3072111	2L_3072111_SNP [dm3] 2L_3072111_SNP [dm6]	A	G	2.358e^-4	0.724	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8776356	X_8776356_SNP [dm3] X_8882323_SNP [dm6]	T	C	2.363e^-4	0.724	UPSTREAM Moe INTRON Moe
3R	16805725	3R_16805725_SNP [dm3] 3R_20980003_SNP [dm6]	T	G	2.363e^-4	0.724	INTRON Calx
3L	16224762	3L_16224762_SNP [dm3] 3L_16231662_SNP [dm6]	G	A	2.375e^-4	0.724	UPSTREAM MED10 DOWNSTREAM CG5027 INTRON PDCD-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	19613437	2L_19613437_SNP [dm3] 2L_19613437_SNP [dm6]	A	T	2.385e^-4	0.724	INTRON Lar
2L	3863568	2L_3863568_SNP [dm3] 2L_3863568_SNP [dm6]	T	C	2.389e^-4	0.724	START_GAINED CG3964 UTR_5_PRIME CG3964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	5154764	2R_5154764_SNP [dm3] 2R_9267259_SNP [dm6]	G	A	2.392e^-4	0.724	INTRON Pkn
3L	19404818	3L_19404818_SNP [dm3] 3L_19411718_SNP [dm6]	G	A	2.398e^-4	0.724	INTRON CG32206
2L	17904644	2L_17904644_INS [dm3] 2L_17904644_INS [dm6]	C	CC	2.399e^-4	0.724	INTERGENIC
2R	6076792	2R_6076792_SNP [dm3] 2R_10189287_SNP [dm6]	C	A	2.404e^-4	0.724	INTRON KCNQ
3R	6910396	3R_6910396_SNP [dm3] 3R_11084674_SNP [dm6]	A	C	2.412e^-4	0.724	EXON CR44940
3L	10477634	3L_10477634_SNP [dm3] 3L_10484534_SNP [dm6]	A	G	2.420e^-4	0.724	INTRON A2bp1
2R	12934653	2R_12934653_INS [dm3] 2R_17047148_INS [dm6]	T	TT	2.425e^-4	0.724	SPLICE_SITE_ACCEPTOR CG9642 DOWNSTREAM CG9640 INTRON CG9642
3R	6911167	3R_6911167_SNP [dm3] 3R_11085445_SNP [dm6]	G	A	2.426e^-4	0.724	EXON CR44940
X	10568189	X_10568189_SNP [dm3] X_10674156_SNP [dm6]	T	C	2.427e^-4	0.724	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9373932	2L_9373932_SNP [dm3] 2L_9373932_SNP [dm6]	C	T	2.432e^-4	0.724	INTRON Shawl EXON CR43865	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9086786	3R_9086786_SNP [dm3] 3R_13261064_SNP [dm6]	G	A	2.433e^-4	0.724	INTRON CG11686
2L	10460009	2L_10460009_SNP [dm3] 2L_10460009_SNP [dm6]	C	T	2.433e^-4	0.724	SYNONYMOUS_CODING LM408
3R	17539644	3R_17539644_SNP [dm3] 3R_21713922_SNP [dm6]	A	C	2.436e^-4	0.724	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10721255	3L_10721255_SNP [dm3] 3L_10728155_SNP [dm6]	C	T	2.438e^-4	0.724	INTERGENIC
X	5925033	X_5925033_SNP [dm3] X_6031000_SNP [dm6]	G	T	2.441e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	21591797	3R_21591797_SNP [dm3] 3R_25766075_SNP [dm6]	C	T	2.442e^-4	0.724	INTERGENIC
2L	17056853	2L_17056853_SNP [dm3] 2L_17056853_SNP [dm6]	A	T	2.445e^-4	0.724	INTERGENIC
2L	14759560	2L_14759560_SNP [dm3] 2L_14759560_SNP [dm6]	C	T	2.449e^-4	0.724	INTERGENIC
3L	14618873	3L_14618873_SNP [dm3] 3L_14625773_SNP [dm6]	G	A	2.451e^-4	0.724	INTRON CG9628	TF binding site BDTNP1_TFBS_z
2R	9291890	2R_9291890_SNP [dm3] 2R_13404385_SNP [dm6]	G	A	2.463e^-4	0.724	INTERGENIC
2L	6599669	2L_6599669_SNP [dm3] 2L_6599669_SNP [dm6]	A	G	2.463e^-4	0.724	INTRON CG11319
3R	9689832	3R_9689832_SNP [dm3] 3R_13864110_SNP [dm6]	C	G	2.466e^-4	0.724	INTERGENIC
2L	2686300	2L_2686300_SNP [dm3] 2L_2686300_SNP [dm6]	G	C	2.469e^-4	0.724	INTRON CG31690
2L	5090404	2L_5090404_SNP [dm3] 2L_5090404_SNP [dm6]	G	T	2.475e^-4	0.724	INTRON pgant5
3L	10681195	3L_10681195_SNP [dm3] 3L_10688095_SNP [dm6]	C	T	2.481e^-4	0.724	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9714730	3R_9714730_SNP [dm3] 3R_13889008_SNP [dm6]	A	T	2.481e^-4	0.724	INTERGENIC
X	17686335	X_17686335_SNP [dm3] X_17792302_SNP [dm6]	C	A	2.485e^-4	0.724	INTRON OdsH
3R	21668868	3R_21668868_SNP [dm3] 3R_25843146_SNP [dm6]	C	T	2.485e^-4	0.724	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
2L	3938424	2L_3938424_DEL [dm3] 2L_3938424_DEL [dm6]	TCTCTTC	T	2.501e^-4	0.724	INTRON fred
3R	7470328	3R_7470328_SNP [dm3] 3R_11644606_SNP [dm6]	A	G	2.507e^-4	0.724	INTRON Csk
2L	13254407	2L_13254407_SNP [dm3] 2L_13254407_SNP [dm6]	G	A	2.519e^-4	0.724	INTRON CG31728
3R	9058432	3R_9058432_SNP [dm3] 3R_13232710_SNP [dm6]	A	G	2.524e^-4	0.724	SYNONYMOUS_CODING Ace
2L	19377224	2L_19377224_SNP [dm3] 2L_19377224_SNP [dm6]	A	G	2.527e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6167185	2L_6167185_SNP [dm3] 2L_6167185_SNP [dm6]	C	T	2.542e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13247801	3L_13247801_SNP [dm3] 3L_13254701_SNP [dm6]	C	T	2.543e^-4	0.724	INTRON caps
3R	7077840	3R_7077840_DEL [dm3] 3R_11252118_DEL [dm6]	TA	T	2.544e^-4	0.724	DOWNSTREAM CR43283 INTRON CR43283 EXON CR43283	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	15879585	3R_15879585_SNP [dm3] 3R_20053863_SNP [dm6]	G	C	2.547e^-4	0.724	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2247322	2L_2247322_SNP [dm3] 2L_2247322_SNP [dm6]	C	T	2.547e^-4	0.724	EXON CR42859
3R	4511435	3R_4511435_SNP [dm3] 3R_8685713_SNP [dm6]	T	C	2.552e^-4	0.724	UPSTREAM CG44227 INTRON CR44937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2L	10802451	2L_10802451_SNP [dm3] 2L_10802451_SNP [dm6]	T	G	2.552e^-4	0.724	INTRON CR44581
2L	17967031	2L_17967031_SNP [dm3] 2L_17967031_SNP [dm6]	G	A	2.552e^-4	0.724	NON_SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8987524	2R_8987524_SNP [dm3] 2R_13100019_SNP [dm6]	A	G	2.554e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9910718	3R_9910718_SNP [dm3] 3R_14084996_SNP [dm6]	G	C	2.555e^-4	0.724	INTRON foxo
2L	19415946	2L_19415946_SNP [dm3] 2L_19415946_SNP [dm6]	A	G	2.558e^-4	0.724	INTRON Pax	TF binding site mE1_TFBS_HSA
X	13067840	X_13067840_SNP [dm3] X_13173807_SNP [dm6]	T	G	2.560e^-4	0.724	INTRON CG34411	TF binding site BDTNP1_TFBS_dl
2L	14769153	2L_14769153_SNP [dm3] 2L_14769153_SNP [dm6]	A	G	2.573e^-4	0.724	INTERGENIC
X	14454284	X_14454284_SNP [dm3] X_14560251_SNP [dm6]	T	C	2.587e^-4	0.724	INTERGENIC
3L	10526622	3L_10526622_SNP [dm3] 3L_10533522_SNP [dm6]	T	C	2.591e^-4	0.724	INTRON A2bp1
3L	18019982	3L_18019982_SNP [dm3] 3L_18026882_SNP [dm6]	A	C	2.598e^-4	0.724	INTRON Eip75B
3L	18019075	3L_18019075_SNP [dm3] 3L_18025975_SNP [dm6]	G	A	2.615e^-4	0.724	INTRON Eip75B
3L	15609772	3L_15609772_INS [dm3] 3L_15616672_INS [dm6]	A	AT	2.617e^-4	0.724	INTRON comm3
3L	12025573	3L_12025573_SNP [dm3] 3L_12032473_SNP [dm6]	T	G	2.625e^-4	0.724	UPSTREAM CG43993 INTRON rols
3R	7604545	3R_7604545_SNP [dm3] 3R_11778823_SNP [dm6]	T	C	2.632e^-4	0.724	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	7102901	3L_7102901_SNP [dm3] 3L_7109801_SNP [dm6]	A	C	2.637e^-4	0.724	INTRON form3
2R	12081429	2R_12081429_SNP [dm3] 2R_16193924_SNP [dm6]	T	C	2.637e^-4	0.724	UTR_3_PRIME clu DOWNSTREAM calypso	transposable element FlyBase
3L	21773158	3L_21773158_SNP [dm3] 3L_21780058_SNP [dm6]	A	G	2.642e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11539085	3L_11539085_SNP [dm3] 3L_11545985_SNP [dm6]	C	A	2.651e^-4	0.724	INTRON Mob2
3R	23301712	3R_23301712_SNP [dm3] 3R_27475990_SNP [dm6]	A	G	2.652e^-4	0.724	INTERGENIC
3R	25266613	3R_25266613_SNP [dm3] 3R_29440891_SNP [dm6]	G	T	2.657e^-4	0.724	INTRON Ptp99A
3L	15751153	3L_15751153_SNP [dm3] 3L_15758053_SNP [dm6]	A	G	2.657e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6402218	2L_6402218_INS [dm3] 2L_6402218_INS [dm6]	G	GACCTAGCCATGTTTG...	2.669e^-4	0.724	INTRON CG42368
3L	15346461	3L_15346461_SNP [dm3] 3L_15353361_SNP [dm6]	T	A	2.675e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15866502	3L_15866502_SNP [dm3] 3L_15873402_SNP [dm6]	T	C	2.681e^-4	0.724	INTRON pHCl
2L	19371824	2L_19371824_SNP [dm3] 2L_19371824_SNP [dm6]	G	A	2.683e^-4	0.724	INTRON CG17349
2R	18295899	2R_18295899_SNP [dm3] 2R_22408394_SNP [dm6]	G	C	2.693e^-4	0.724	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14008950	X_14008950_DEL [dm3] X_14114917_DEL [dm6]	AC	A	2.693e^-4	0.724	INTRON CR44657	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5351876	X_5351876_SNP [dm3] X_5457843_SNP [dm6]	T	C	2.698e^-4	0.724	INTRON SPR	TF binding site mE1_TFBS_chinmo
3L	17897745	3L_17897745_SNP [dm3] 3L_17904645_SNP [dm6]	G	T	2.699e^-4	0.724	INTRON Prestin
3L	6998227	3L_6998227_SNP [dm3] 3L_7005127_SNP [dm6]	C	T	2.700e^-4	0.724	INTRON Mp
3L	10681199	3L_10681199_SNP [dm3] 3L_10688099_SNP [dm6]	C	A	2.702e^-4	0.724	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	6919082	3L_6919082_SNP [dm3] 3L_6925982_SNP [dm6]	C	A	2.705e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11265538	3L_11265538_INS [dm3] 3L_11272438_INS [dm6]	G	GTG	2.707e^-4	0.724	INTERGENIC
2R	7125139	2R_7125139_SNP [dm3] 2R_11237634_SNP [dm6]	A	G	2.707e^-4	0.724	UTR_5_PRIME CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7679124	3R_7679124_SNP [dm3] 3R_11853402_SNP [dm6]	G	T	2.715e^-4	0.724	INTRON CG6959
3R	13204054	3R_13204054_SNP [dm3] 3R_17378332_SNP [dm6]	C	G	2.715e^-4	0.724	INTRON Brf
2R	8639226	2R_8639226_SNP [dm3] 2R_12751721_SNP [dm6]	C	A	2.716e^-4	0.724	SYNONYMOUS_CODING mos DOWNSTREAM CG42663
3R	15739626	3R_15739626_SNP [dm3] 3R_19913904_SNP [dm6]	C	A	2.722e^-4	0.724	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others
3R	22134134	3R_22134134_SNP [dm3] 3R_26308412_SNP [dm6]	A	G	2.726e^-4	0.724	INTERGENIC
3R	7004768	3R_7004768_SNP [dm3] 3R_11179046_SNP [dm6]	C	A	2.727e^-4	0.724	INTERGENIC
2L	13707898	2L_13707898_SNP [dm3] 2L_13707898_SNP [dm6]	G	C	2.727e^-4	0.724	UPSTREAM CG7311 INTRON CG31814
2L	2689699	2L_2689699_SNP [dm3] 2L_2689699_SNP [dm6]	C	A	2.728e^-4	0.724	INTRON CG31690
2L	19884967	2L_19884967_SNP [dm3] 2L_19884967_SNP [dm6]	C	T	2.732e^-4	0.724	INTRON sick
2R	6292314	2R_6292314_SNP [dm3] 2R_10404809_SNP [dm6]	A	C	2.733e^-4	0.724	INTRON CG42732
3R	12900293	3R_12900293_SNP [dm3] 3R_17074571_SNP [dm6]	T	C	2.734e^-4	0.724	NON_SYNONYMOUS_CODING Keap1 DOWNSTREAM mRpS11
3R	23197969	3R_23197969_SNP [dm3] 3R_27372247_SNP [dm6]	G	A	2.740e^-4	0.724	UTR_3_PRIME CG42534 DOWNSTREAM CG42534
3L	2149427	3L_2149427_SNP [dm3] 3L_2149427_SNP [dm6]	A	G	2.742e^-4	0.724	INTRON zormin
X	11366321	X_11366321_SNP [dm3] X_11472288_SNP [dm6]	G	C	2.746e^-4	0.724	INTRON CG43155
2L	17408982	2L_17408982_SNP [dm3] 2L_17408982_SNP [dm6]	A	C	2.747e^-4	0.724	SYNONYMOUS_CODING CLIP-190 DOWNSTREAM Rpb11
2L	3557958	2L_3557958_SNP [dm3] 2L_3557958_SNP [dm6]	G	A	2.763e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19468540	2L_19468540_INS [dm3] 2L_19468540_INS [dm6]	C	CT	2.765e^-4	0.724	UPSTREAM CR45722 DOWNSTREAM tj INTERGENIC
2L	5088818	2L_5088818_SNP [dm3] 2L_5088818_SNP [dm6]	G	T	2.766e^-4	0.724	INTRON pgant5
2R	6295847	2R_6295847_SNP [dm3] 2R_10408342_SNP [dm6]	C	T	2.771e^-4	0.724	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
2R	7547313	2R_7547313_SNP [dm3] 2R_11659808_SNP [dm6]	T	C	2.774e^-4	0.724	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12331940	3L_12331940_DEL [dm3] 3L_12338840_DEL [dm6]	CATCC	C	2.775e^-4	0.724	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1093784	2L_1093784_SNP [dm3] 2L_1093784_SNP [dm6]	C	A	2.777e^-4	0.724	INTRON CG4629
2R	6336072	2R_6336072_SNP [dm3] 2R_10448567_SNP [dm6]	G	A	2.785e^-4	0.724	SYNONYMOUS_CODING Galphao DOWNSTREAM Cyp49a1
3R	15638870	3R_15638870_SNP [dm3] 3R_19813148_SNP [dm6]	C	T	2.786e^-4	0.724	INTRON bnl
2L	5088225	2L_5088225_SNP [dm3] 2L_5088225_SNP [dm6]	T	A	2.788e^-4	0.724	INTRON pgant5
3R	10084503	3R_10084503_SNP [dm3] 3R_14258781_SNP [dm6]	G	A	2.788e^-4	0.724	SYNONYMOUS_CODING Aats-met
3R	14284734	3R_14284734_SNP [dm3] 3R_18459012_SNP [dm6]	A	T	2.799e^-4	0.724	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5083450	2L_5083450_SNP [dm3] 2L_5083450_SNP [dm6]	G	C	2.801e^-4	0.724	INTRON pgant5
2L	6728875	2L_6728875_SNP [dm3] 2L_6728875_SNP [dm6]	C	T	2.801e^-4	0.724	SPLICE_SITE_REGION Liprin-alpha INTRON Liprin-alpha	TF binding site mE1_TFBS_chinmo
2L	19436835	2L_19436835_SNP [dm3] 2L_19436835_SNP [dm6]	A	G	2.809e^-4	0.724	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
3R	18486245	3R_18486245_SNP [dm3] 3R_22660523_SNP [dm6]	G	C	2.816e^-4	0.724	INTRON CG45058
X	5279545	X_5279545_SNP [dm3] X_5385512_SNP [dm6]	G	T	2.823e^-4	0.724	INTRON SK
2L	9374132	2L_9374132_SNP [dm3] 2L_9374132_SNP [dm6]	C	A	2.830e^-4	0.724	DOWNSTREAM CR43865 INTRON Shawl
2L	15890638	2L_15890638_SNP [dm3] 2L_15890638_SNP [dm6]	C	G	2.835e^-4	0.724	NON_SYNONYMOUS_CODING Tep1
2L	17867699	2L_17867699_SNP [dm3] 2L_17867699_SNP [dm6]	C	T	2.838e^-4	0.724	INTRON CadN2
3L	6983385	3L_6983385_SNP [dm3] 3L_6990285_SNP [dm6]	C	G	2.841e^-4	0.724	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17849339	2L_17849339_SNP [dm3] 2L_17849339_SNP [dm6]	T	C	2.849e^-4	0.724	INTRON CadN2
2L	17903450	2L_17903450_SNP [dm3] 2L_17903450_SNP [dm6]	C	G	2.857e^-4	0.724	UPSTREAM CR45332 & 1 other INTERGENIC
3L	11636945	3L_11636945_SNP [dm3] 3L_11643845_SNP [dm6]	C	G	2.859e^-4	0.724	SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
2L	8219224	2L_8219224_SNP [dm3] 2L_8219224_SNP [dm6]	G	A	2.861e^-4	0.724	SYNONYMOUS_CODING Snx6
2R	11217568	2R_11217568_SNP [dm3] 2R_15330063_SNP [dm6]	T	C	2.863e^-4	0.724	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11366403	X_11366403_SNP [dm3] X_11472370_SNP [dm6]	T	G	2.864e^-4	0.724	INTRON CG43155
3L	10721283	3L_10721283_SNP [dm3] 3L_10728183_SNP [dm6]	A	G	2.868e^-4	0.724	INTERGENIC
3R	9067053	3R_9067053_SNP [dm3] 3R_13241331_SNP [dm6]	A	T	2.885e^-4	0.724	INTRON Ace
2L	10460012	2L_10460012_SNP [dm3] 2L_10460012_SNP [dm6]	T	C	2.890e^-4	0.724	SYNONYMOUS_CODING LM408
2R	14452860	2R_14452860_SNP [dm3] 2R_18565355_SNP [dm6]	C	T	2.891e^-4	0.724	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6264559	2R_6264559_SNP [dm3] 2R_10377054_SNP [dm6]	T	G	2.909e^-4	0.724	DOWNSTREAM Ir47a INTRON CG42732 EXON Ir47b	TF binding site mE1_TFBS_HSA
3R	22134597	3R_22134597_SNP [dm3] 3R_26308875_SNP [dm6]	G	T	2.917e^-4	0.724	INTERGENIC
3R	24171609	3R_24171609_SNP [dm3] 3R_28345887_SNP [dm6]	G	A	2.930e^-4	0.724	DOWNSTREAM Moca-cyp INTERGENIC
2L	19372094	2L_19372094_DEL [dm3] 2L_19372094_DEL [dm6]	TCCT	T	2.931e^-4	0.724	INTRON CG17349
3R	19080936	3R_19080936_SNP [dm3] 3R_23255214_SNP [dm6]	G	A	2.931e^-4	0.724	UTR_3_PRIME wda DOWNSTREAM EloA
3L	15931448	3L_15931448_SNP [dm3] 3L_15938348_SNP [dm6]	T	C	2.932e^-4	0.724	INTRON Pka-C3
2L	9609754	2L_9609754_SNP [dm3] 2L_9609754_SNP [dm6]	C	T	2.935e^-4	0.724	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	20552035	3R_20552035_SNP [dm3] 3R_24726313_SNP [dm6]	G	A	2.937e^-4	0.724	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13068228	X_13068228_SNP [dm3] X_13174195_SNP [dm6]	C	T	2.940e^-4	0.724	INTRON CG34411
3R	17542992	3R_17542992_SNP [dm3] 3R_21717270_SNP [dm6]	C	T	2.955e^-4	0.724	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	13679849	3L_13679849_SNP [dm3] 3L_13686749_SNP [dm6]	C	G	2.962e^-4	0.724	INTRON bru-3
3R	22126288	3R_22126288_INS [dm3] 3R_26300566_INS [dm6]	A	ACATGA	2.962e^-4	0.724	INTERGENIC
2L	2528237	2L_2528237_SNP [dm3] 2L_2528237_SNP [dm6]	T	C	2.962e^-4	0.724	INTERGENIC
3R	10227597	3R_10227597_SNP [dm3] 3R_14401875_SNP [dm6]	A	G	2.965e^-4	0.724	INTRON cv-c
3L	17950574	3L_17950574_SNP [dm3] 3L_17957474_SNP [dm6]	T	C	2.967e^-4	0.724	INTRON Eip75B
2R	14930575	2R_14930575_SNP [dm3] 2R_19043070_SNP [dm6]	G	T	2.967e^-4	0.724	INTERGENIC
2R	9308957	2R_9308957_SNP [dm3] 2R_13421452_SNP [dm6]	C	T	2.970e^-4	0.724	SYNONYMOUS_CODING CG42321
2L	12449782	2L_12449782_SNP [dm3] 2L_12449782_SNP [dm6]	C	G	2.972e^-4	0.724	INTRON Oatp33Eb	TF binding site mE1_TFBS_cad
3R	23301756	3R_23301756_SNP [dm3] 3R_27476034_SNP [dm6]	A	T	2.972e^-4	0.724	INTERGENIC
2L	18263027	2L_18263027_SNP [dm3] 2L_18263027_SNP [dm6]	A	T	2.974e^-4	0.724	UPSTREAM CR44901 INTRON CG42750
2L	6727627	2L_6727627_SNP [dm3] 2L_6727627_SNP [dm6]	T	G	2.977e^-4	0.724	INTRON Liprin-alpha
2L	13935651	2L_13935651_SNP [dm3] 2L_13935651_SNP [dm6]	T	A	2.980e^-4	0.724	UPSTREAM CG16885 INTRON Ance-3
3R	16249396	3R_16249396_SNP [dm3] 3R_20423674_SNP [dm6]	C	T	2.985e^-4	0.724	INTRON Gfrl
2R	3744188	2R_3744188_SNP [dm3] 2R_7856683_SNP [dm6]	A	T	2.986e^-4	0.724	INTRON Dgk
2R	18015204	2R_18015204_SNP [dm3] 2R_22127699_SNP [dm6]	G	A	2.986e^-4	0.724	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	18942416	2R_18942416_DEL [dm3] 2R_23054893_DEL [dm6]	AA	A	2.987e^-4	0.724	UPSTREAM CG44252 INTERGENIC
3L	11155957	3L_11155957_SNP [dm3] 3L_11162857_SNP [dm6]	A	T	2.988e^-4	0.724	UTR_3_PRIME CG32082 DOWNSTREAM CR43989 INTRON CG32082	TF binding site mE1_TFBS_cad
2L	2514154	2L_2514154_SNP [dm3] 2L_2514154_SNP [dm6]	G	A	2.990e^-4	0.724	INTERGENIC
3R	15636420	3R_15636420_SNP [dm3] 3R_19810698_SNP [dm6]	G	T	2.992e^-4	0.724	INTRON bnl
3R	9086218	3R_9086218_DEL [dm3] 3R_13260496_DEL [dm6]	AT	A	2.993e^-4	0.724	UPSTREAM Ace INTRON CG11686
X	15023606	X_15023606_SNP [dm3] X_15129573_SNP [dm6]	G	C	2.997e^-4	0.724	INTRON drd
2R	14675192	2R_14675192_SNP [dm3] 2R_18787687_SNP [dm6]	C	A	3.000e^-4	0.724	INTRON CG15080
X	16022190	X_16022190_SNP [dm3] X_16128157_SNP [dm6]	C	A	3.004e^-4	0.724	INTRON disco-r
3R	21180417	3R_21180417_SNP [dm3] 3R_25354695_SNP [dm6]	G	T	3.010e^-4	0.724	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	19358155	2L_19358155_SNP [dm3] 2L_19358155_SNP [dm6]	A	G	3.011e^-4	0.724	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19359381	2L_19359381_SNP [dm3] 2L_19359381_SNP [dm6]	T	C	3.016e^-4	0.724	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18204994	3L_18204994_SNP [dm3] 3L_18211894_SNP [dm6]	A	T	3.020e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	2687194	3L_2687194_SNP [dm3] 3L_2687194_SNP [dm6]	G	A	3.025e^-4	0.724	INTRON Fife
2L	1300550	2L_1300550_SNP [dm3] 2L_1300550_SNP [dm6]	T	G	3.036e^-4	0.724	INTERGENIC
3L	15609763	3L_15609763_SNP [dm3] 3L_15616663_SNP [dm6]	T	G	3.042e^-4	0.724	INTRON comm3
3R	21568320	3R_21568320_SNP [dm3] 3R_25742598_SNP [dm6]	A	G	3.043e^-4	0.724	INTRON LpR1
3R	9930920	3R_9930920_SNP [dm3] 3R_14105198_SNP [dm6]	T	G	3.043e^-4	0.724	UTR_3_PRIME CG12402
2L	13991292	2L_13991292_SNP [dm3] 2L_13991292_SNP [dm6]	T	C	3.043e^-4	0.724	INTRON rk
3L	18841724	3L_18841724_SNP [dm3] 3L_18848624_SNP [dm6]	A	G	3.045e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	13672764	3L_13672764_SNP [dm3] 3L_13679664_SNP [dm6]	C	T	3.048e^-4	0.724	INTRON bru-3
X	15094388	X_15094388_SNP [dm3] X_15200355_SNP [dm6]	C	T	3.053e^-4	0.724	INTERGENIC
2L	16740557	2L_16740557_INS [dm3] 2L_16740557_INS [dm6]	G	GCT	3.053e^-4	0.724	INTRON ChLD3
2L	1823487	2L_1823487_SNP [dm3] 2L_1823487_SNP [dm6]	A	G	3.056e^-4	0.724	UPSTREAM CG31933 DOWNSTREAM CG31664 INTERGENIC
3L	4816550	3L_4816550_SNP [dm3] 3L_4816550_SNP [dm6]	A	C	3.057e^-4	0.724	SYNONYMOUS_CODING Dhc64C
3L	17893459	3L_17893459_SNP [dm3] 3L_17900359_SNP [dm6]	T	C	3.061e^-4	0.724	SYNONYMOUS_CODING Prestin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2512217	2L_2512217_SNP [dm3] 2L_2512217_SNP [dm6]	G	A	3.062e^-4	0.724	INTERGENIC
3L	5617448	3L_5617448_SNP [dm3] 3L_5624348_SNP [dm6]	A	G	3.067e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	3197377	X_3197377_SNP [dm3] X_3303344_SNP [dm6]	C	A	3.077e^-4	0.724	INTRON dnc
3R	14364898	3R_14364898_INS [dm3] 3R_18539176_INS [dm6]	A	ACCTTTCAT	3.079e^-4	0.724	INTRON fru
3L	2680052	3L_2680052_SNP [dm3] 3L_2680052_SNP [dm6]	G	A	3.084e^-4	0.724	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	2511891	2L_2511891_SNP [dm3] 2L_2511891_SNP [dm6]	A	G	3.085e^-4	0.724	INTERGENIC
2L	17967359	2L_17967359_SNP [dm3] 2L_17967359_SNP [dm6]	G	A	3.086e^-4	0.724	SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA
2L	11442822	2L_11442822_SNP [dm3] 2L_11442822_SNP [dm6]	A	T	3.087e^-4	0.724	INTRON salm
2L	17890074	2L_17890074_SNP [dm3] 2L_17890074_SNP [dm6]	C	T	3.091e^-4	0.724	INTERGENIC
2L	13264658	2L_13264658_SNP [dm3] 2L_13264658_SNP [dm6]	T	G	3.096e^-4	0.724	DOWNSTREAM CG31848 INTRON CG44085
3L	18849800	3L_18849800_SNP [dm3] 3L_18856700_SNP [dm6]	A	C	3.106e^-4	0.724	UPSTREAM CR45388 INTERGENIC
3L	20050983	3L_20050983_SNP [dm3] 3L_20057883_SNP [dm6]	A	C	3.112e^-4	0.724	DOWNSTREAM sNPF-R INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9817362	3L_9817362_SNP [dm3] 3L_9824262_SNP [dm6]	T	C	3.116e^-4	0.724	UPSTREAM Ilp5 INTRON CG43897
2L	2533617	2L_2533617_SNP [dm3] 2L_2533617_SNP [dm6]	A	T	3.126e^-4	0.724	UPSTREAM CR44112 INTERGENIC
3R	16774607	3R_16774607_SNP [dm3] 3R_20948885_SNP [dm6]	A	T	3.128e^-4	0.724	INTRON Atpalpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	9945600	3L_9945600_SNP [dm3] 3L_9952500_SNP [dm6]	T	G	3.133e^-4	0.724	INTRON CG34356
X	13068440	X_13068440_INS [dm3] X_13174407_INS [dm6]	C	CA	3.138e^-4	0.724	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
3L	18254891	3L_18254891_DEL [dm3] 3L_18261791_DEL [dm6]	ACCAATGCCCTTC...	A	3.144e^-4	0.724	INTERGENIC
2R	14048701	2R_14048701_SNP [dm3] 2R_18161196_SNP [dm6]	C	T	3.151e^-4	0.724	SYNONYMOUS_CODING CG10915 DOWNSTREAM CG10914	TF binding site mE1_TFBS_sens
3L	11842345	3L_11842345_SNP [dm3] 3L_11849245_SNP [dm6]	G	A	3.152e^-4	0.724	INTERGENIC
3R	13942738	3R_13942738_SNP [dm3] 3R_18117016_SNP [dm6]	A	T	3.155e^-4	0.724	INTRON sr
2L	10258460	2L_10258460_DEL [dm3] 2L_10258460_DEL [dm6]	TTTACTGCACT...	T	3.163e^-4	0.724	INTRON Pten
2R	3890188	2R_3890188_SNP [dm3] 2R_8002683_SNP [dm6]	C	A	3.173e^-4	0.724	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17542959	3R_17542959_SNP [dm3] 3R_21717237_SNP [dm6]	A	T	3.175e^-4	0.724	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	17222715	3L_17222715_SNP [dm3] 3L_17229615_SNP [dm6]	G	C	3.182e^-4	0.724	INTRON Rbp6
3R	1807153	3R_1807153_SNP [dm3] 3R_5981431_SNP [dm6]	G	A	3.185e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9423604	X_9423604_SNP [dm3] X_9529571_SNP [dm6]	A	G	3.187e^-4	0.724	INTRON CG32700
3R	9074623	3R_9074623_SNP [dm3] 3R_13248901_SNP [dm6]	G	A	3.188e^-4	0.724	INTRON Ace
2L	2331677	2L_2331677_DEL [dm3] 2L_2331677_DEL [dm6]	TCTG	T	3.192e^-4	0.724	INTRON CG9967 & 1 other
2R	16226664	2R_16226664_SNP [dm3] 2R_20339159_SNP [dm6]	G	C	3.199e^-4	0.724	INTERGENIC
3R	10226764	3R_10226764_SNP [dm3] 3R_14401042_SNP [dm6]	A	C	3.206e^-4	0.724	INTRON cv-c
2R	6292234	2R_6292234_SNP [dm3] 2R_10404729_SNP [dm6]	G	C	3.226e^-4	0.724	INTRON CG42732
2L	1626396	2L_1626396_DEL [dm3] 2L_1626396_DEL [dm6]	ATGTTTT	A	3.230e^-4	0.724	UPSTREAM CR44603 INTERGENIC
2R	15207048	2R_15207048_SNP [dm3] 2R_19319543_SNP [dm6]	G	A	3.230e^-4	0.724	SYNONYMOUS_CODING Rgk1
3R	21584814	3R_21584814_SNP [dm3] 3R_25759092_SNP [dm6]	C	G	3.237e^-4	0.724	NON_SYNONYMOUS_CODING LpR1 INTRON LpR1
3R	9348064	3R_9348064_SNP [dm3] 3R_13522342_SNP [dm6]	T	G	3.239e^-4	0.724	DOWNSTREAM CG12538 INTERGENIC
3R	23321997	3R_23321997_SNP [dm3] 3R_27496275_SNP [dm6]	T	C	3.245e^-4	0.724	INTERGENIC
3R	13201614	3R_13201614_SNP [dm3] 3R_17375892_SNP [dm6]	C	T	3.250e^-4	0.724	NON_SYNONYMOUS_CODING Brf
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	3.253e^-4	0.724	UPSTREAM CG12003 INTRON CG7879
3L	16309720	3L_16309720_SNP [dm3] 3L_16316620_SNP [dm6]	A	G	3.260e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16628186	2L_16628186_SNP [dm3] 2L_16628186_SNP [dm6]	G	C	3.261e^-4	0.724	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16965943	2R_16965943_SNP [dm3] 2R_21078438_SNP [dm6]	A	G	3.271e^-4	0.724	INTRON Treh
2L	6599678	2L_6599678_SNP [dm3] 2L_6599678_SNP [dm6]	C	A	3.276e^-4	0.724	INTRON CG11319
3R	23485618	3R_23485618_SNP [dm3] 3R_27659896_SNP [dm6]	A	T	3.285e^-4	0.724	INTRON Mlc1
3R	21233132	3R_21233132_SNP [dm3] 3R_25407410_SNP [dm6]	A	C	3.286e^-4	0.724	INTRON Fur1
3R	16588075	3R_16588075_SNP [dm3] 3R_20762353_SNP [dm6]	G	C	3.286e^-4	0.724	UTR_5_PRIME CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9607722	2L_9607722_SNP [dm3] 2L_9607722_SNP [dm6]	G	A	3.294e^-4	0.724	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5091889	2L_5091889_SNP [dm3] 2L_5091889_SNP [dm6]	A	G	3.295e^-4	0.724	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
3R	16774158	3R_16774158_SNP [dm3] 3R_20948436_SNP [dm6]	G	T	3.299e^-4	0.724	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8528710	2L_8528710_SNP [dm3] 2L_8528710_SNP [dm6]	C	T	3.302e^-4	0.724	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2509391	2L_2509391_SNP [dm3] 2L_2509391_SNP [dm6]	C	T	3.305e^-4	0.724	INTERGENIC
2L	2509988	2L_2509988_SNP [dm3] 2L_2509988_SNP [dm6]	T	G	3.305e^-4	0.724	INTERGENIC
2L	2510073	2L_2510073_SNP [dm3] 2L_2510073_SNP [dm6]	A	G	3.305e^-4	0.724	INTERGENIC
2L	2514243	2L_2514243_SNP [dm3] 2L_2514243_SNP [dm6]	A	G	3.305e^-4	0.724	INTERGENIC
3R	19014088	3R_19014088_SNP [dm3] 3R_23188366_SNP [dm6]	G	T	3.307e^-4	0.724	SYNONYMOUS_CODING cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19675726	2L_19675726_SNP [dm3] 2L_19675726_SNP [dm6]	C	A	3.307e^-4	0.724	INTRON Lar
2L	15517473	2L_15517473_SNP [dm3] 2L_15517473_SNP [dm6]	A	G	3.317e^-4	0.724	UPSTREAM CR44864 INTERGENIC
X	7160588	X_7160588_DEL [dm3] X_7266555_DEL [dm6]	GC	G	3.317e^-4	0.724	UPSTREAM CG1958 INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	1093798	2L_1093798_SNP [dm3] 2L_1093798_SNP [dm6]	G	T	3.318e^-4	0.724	INTRON CG4629
2L	1029576	2L_1029576_SNP [dm3] 2L_1029576_SNP [dm6]	A	G	3.324e^-4	0.724	INTRON IA-2
2L	17037048	2L_17037048_SNP [dm3] 2L_17037048_SNP [dm6]	G	T	3.333e^-4	0.724	INTERGENIC
3R	1788056	3R_1788056_SNP [dm3] 3R_5962334_SNP [dm6]	G	T	3.335e^-4	0.724	INTERGENIC
2L	18343901	2L_18343901_SNP [dm3] 2L_18343901_SNP [dm6]	T	C	3.346e^-4	0.724	INTRON Fas3
2L	4370186	2L_4370186_SNP [dm3] 2L_4370186_SNP [dm6]	C	A	3.350e^-4	0.724	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1823489	2L_1823489_SNP [dm3] 2L_1823489_SNP [dm6]	C	G	3.351e^-4	0.724	UPSTREAM CG31933 DOWNSTREAM CG31664 INTERGENIC
2L	2514875	2L_2514875_SNP [dm3] 2L_2514875_SNP [dm6]	T	C	3.351e^-4	0.724	INTERGENIC
3L	10681204	3L_10681204_SNP [dm3] 3L_10688104_SNP [dm6]	G	A	3.376e^-4	0.724	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18701400	2R_18701400_SNP [dm3] 2R_22813895_SNP [dm6]	C	T	3.383e^-4	0.724	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo
3L	11953016	3L_11953016_SNP [dm3] 3L_11959916_SNP [dm6]	A	C	3.386e^-4	0.724	INTRON prc
2L	19431730	2L_19431730_SNP [dm3] 2L_19431730_SNP [dm6]	G	C	3.391e^-4	0.724	SYNONYMOUS_CODING CG9987 UPSTREAM Rab9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6727511	2L_6727511_SNP [dm3] 2L_6727511_SNP [dm6]	C	A	3.391e^-4	0.724	INTRON Liprin-alpha
2R	7547319	2R_7547319_SNP [dm3] 2R_11659814_SNP [dm6]	C	G	3.401e^-4	0.724	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2482384	2L_2482384_SNP [dm3] 2L_2482384_SNP [dm6]	T	A	3.402e^-4	0.724	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	1625979	2L_1625979_SNP [dm3] 2L_1625979_SNP [dm6]	G	C	3.409e^-4	0.724	EXON CR44603
3R	21733669	3R_21733669_SNP [dm3] 3R_25907947_SNP [dm6]	A	G	3.413e^-4	0.724	SYNONYMOUS_CODING CG42235
3R	10343265	3R_10343265_SNP [dm3] 3R_14517543_SNP [dm6]	C	G	3.416e^-4	0.724	DOWNSTREAM CG34273 INTRON Pde6
3L	10526595	3L_10526595_SNP [dm3] 3L_10533495_SNP [dm6]	T	C	3.419e^-4	0.724	INTRON A2bp1
2R	19543597	2R_19543597_SNP [dm3] 2R_23656074_SNP [dm6]	G	A	3.425e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6810514	2R_6810514_SNP [dm3] 2R_10923009_SNP [dm6]	G	A	3.429e^-4	0.724	INTERGENIC
3R	6242957	3R_6242957_SNP [dm3] 3R_10417235_SNP [dm6]	A	C	3.432e^-4	0.724	INTERGENIC
2L	2686291	2L_2686291_SNP [dm3] 2L_2686291_SNP [dm6]	T	C	3.441e^-4	0.724	INTRON CG31690
X	3197310	X_3197310_SNP [dm3] X_3303277_SNP [dm6]	G	A	3.451e^-4	0.724	INTRON dnc
3R	13845419	3R_13845419_SNP [dm3] 3R_18019697_SNP [dm6]	T	C	3.451e^-4	0.724	DOWNSTREAM cpo INTRON DNaseII	TF binding site BDTNP1_TFBS_twi
3R	17031494	3R_17031494_SNP [dm3] 3R_21205772_SNP [dm6]	T	C	3.452e^-4	0.724	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9916174	2R_9916174_SNP [dm3] 2R_14028669_SNP [dm6]	T	C	3.456e^-4	0.724	UTR_5_PRIME CG18371 INTRON mam
3L	7202378	3L_7202378_SNP [dm3] 3L_7209278_SNP [dm6]	C	A	3.456e^-4	0.724	INTERGENIC
3L	6290649	3L_6290649_SNP [dm3] 3L_6297549_SNP [dm6]	A	T	3.464e^-4	0.724	INTERGENIC
3L	3505899	3L_3505899_SNP [dm3] 3L_3505899_SNP [dm6]	G	A	3.465e^-4	0.724	DOWNSTREAM CG42324 INTRON CG42324
3L	20081289	3L_20081289_SNP [dm3] 3L_20088189_SNP [dm6]	C	G	3.477e^-4	0.724	INTRON sNPF-R
2R	4576139	2R_4576139_SNP [dm3] 2R_8688634_SNP [dm6]	A	T	3.482e^-4	0.724	INTERGENIC
2L	3884907	2L_3884907_SNP [dm3] 2L_3884907_SNP [dm6]	T	C	3.483e^-4	0.724	INTRON capu
2L	9519912	2L_9519912_SNP [dm3] 2L_9519912_SNP [dm6]	T	C	3.490e^-4	0.724	UTR_3_PRIME CG33298
3R	17778440	3R_17778440_INS [dm3] 3R_21952718_INS [dm6]	G	GG	3.501e^-4	0.724	INTRON Eip93F
3L	1057367	3L_1057367_SNP [dm3] 3L_1057367_SNP [dm6]	C	G	3.501e^-4	0.724	INTRON bab1
3L	15609766	3L_15609766_SNP [dm3] 3L_15616666_SNP [dm6]	T	G	3.503e^-4	0.724	INTRON comm3
2L	2501036	2L_2501036_SNP [dm3] 2L_2501036_SNP [dm6]	G	C	3.510e^-4	0.724	INTERGENIC
2L	2692012	2L_2692012_SNP [dm3] 2L_2692012_SNP [dm6]	T	G	3.511e^-4	0.724	INTRON CG31690
2L	5091909	2L_5091909_SNP [dm3] 2L_5091909_SNP [dm6]	T	C	3.512e^-4	0.724	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
3R	23659049	3R_23659049_SNP [dm3] 3R_27833327_SNP [dm6]	A	T	3.513e^-4	0.724	INTRON CG34353
3L	22662319	3L_22662319_SNP [dm3] 3L_22669219_SNP [dm6]	G	A	3.515e^-4	0.724	UPSTREAM CG14457 DOWNSTREAM mir-958 INTRON CR43270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2488244	2L_2488244_SNP [dm3] 2L_2488244_SNP [dm6]	C	T	3.521e^-4	0.724	UTR_3_PRIME Slh	enhancer FlyBase
2L	11901966	2L_11901966_SNP [dm3] 2L_11901966_SNP [dm6]	C	T	3.528e^-4	0.724	INTRON Pde1c
2R	3066410	2R_3066410_SNP [dm3] 2R_7178905_SNP [dm6]	G	T	3.529e^-4	0.724	SYNONYMOUS_CODING CG33140 DOWNSTREAM CG11060 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10201041	3R_10201041_SNP [dm3] 3R_14375319_SNP [dm6]	T	A	3.531e^-4	0.724	DOWNSTREAM CR44943 INTERGENIC
X	14585472	X_14585472_SNP [dm3] X_14691439_SNP [dm6]	C	A	3.532e^-4	0.724	INTRON NetB
3L	1707608	3L_1707608_SNP [dm3] 3L_1707608_SNP [dm6]	A	G	3.532e^-4	0.724	INTRON CG7991
X	8370160	X_8370160_SNP [dm3] X_8476127_SNP [dm6]	A	G	3.535e^-4	0.724	UPSTREAM Cp7Fc DOWNSTREAM Cp7Fb INTRON CG33223
3L	6010914	3L_6010914_SNP [dm3] 3L_6017814_SNP [dm6]	T	C	3.535e^-4	0.724	INTRON PVRAP
3R	21808045	3R_21808045_SNP [dm3] 3R_25982323_SNP [dm6]	C	T	3.544e^-4	0.724	UTR_3_PRIME CG42261 UPSTREAM Nf1	TF binding site BDTNP1_TFBS_dl
2L	8702953	2L_8702953_SNP [dm3] 2L_8702953_SNP [dm6]	T	C	3.544e^-4	0.724	UPSTREAM CR44992 INTRON Hnf4
3R	17401516	3R_17401516_SNP [dm3] 3R_21575794_SNP [dm6]	A	G	3.549e^-4	0.724	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
2R	7129568	2R_7129568_SNP [dm3] 2R_11242063_SNP [dm6]	G	A	3.551e^-4	0.724	NON_SYNONYMOUS_CODING Listericin
3L	11368185	3L_11368185_SNP [dm3] 3L_11375085_SNP [dm6]	A	C	3.565e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19651093	2L_19651093_INS [dm3] 2L_19651093_INS [dm6]	A	AA	3.567e^-4	0.724	INTRON Lar
3L	15343435	3L_15343435_SNP [dm3] 3L_15350335_SNP [dm6]	C	T	3.590e^-4	0.724	INTERGENIC
3R	16007184	3R_16007184_SNP [dm3] 3R_20181462_SNP [dm6]	A	T	3.591e^-4	0.724	INTERGENIC
3L	11591849	3L_11591849_SNP [dm3] 3L_11598749_SNP [dm6]	C	T	3.595e^-4	0.724	DOWNSTREAM CG14137 INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
2R	8634845	2R_8634845_SNP [dm3] 2R_12747340_SNP [dm6]	A	G	3.609e^-4	0.724	INTRON CG42663	TF binding site mE1_TFBS_cad
3L	2712613	3L_2712613_SNP [dm3] 3L_2712613_SNP [dm6]	A	G	3.611e^-4	0.724	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2515525	2L_2515525_SNP [dm3] 2L_2515525_SNP [dm6]	G	C	3.615e^-4	0.724	INTERGENIC
3L	15904371	3L_15904371_SNP [dm3] 3L_15911271_SNP [dm6]	A	G	3.625e^-4	0.724	UTR_5_PRIME sff
3R	13274294	3R_13274294_SNP [dm3] 3R_17448572_SNP [dm6]	C	T	3.629e^-4	0.724	INTRON Eh
2L	6728192	2L_6728192_SNP [dm3] 2L_6728192_SNP [dm6]	T	C	3.633e^-4	0.724	SYNONYMOUS_CODING Liprin-alpha	TF binding site mE1_TFBS_chinmo
3L	4121070	3L_4121070_SNP [dm3] 3L_4121070_SNP [dm6]	C	T	3.633e^-4	0.724	INTRON Chd64
3L	10739901	3L_10739901_SNP [dm3] 3L_10746801_SNP [dm6]	G	A	3.636e^-4	0.724	INTERGENIC
3R	23488833	3R_23488833_SNP [dm3] 3R_27663111_SNP [dm6]	C	G	3.638e^-4	0.724	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10215271	3R_10215271_DEL [dm3] 3R_14389549_DEL [dm6]	TTG	T	3.641e^-4	0.724	INTERGENIC
3R	10866347	3R_10866347_SNP [dm3] 3R_15040625_SNP [dm6]	A	T	3.645e^-4	0.724	DOWNSTREAM CR44944 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8730413	X_8730413_SNP [dm3] X_8836380_SNP [dm6]	C	A	3.647e^-4	0.724	EXON CR45537
2L	14758625	2L_14758625_SNP [dm3] 2L_14758625_SNP [dm6]	A	T	3.649e^-4	0.724	INTERGENIC
3R	9080608	3R_9080608_SNP [dm3] 3R_13254886_SNP [dm6]	A	C	3.650e^-4	0.724	INTRON Ace
3R	7471655	3R_7471655_SNP [dm3] 3R_11645933_SNP [dm6]	C	T	3.659e^-4	0.724	INTRON Csk
2R	16168437	2R_16168437_SNP [dm3] 2R_20280932_SNP [dm6]	G	A	3.661e^-4	0.724	START_GAINED CG9090 UTR_5_PRIME CG9090 UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	12934939	2R_12934939_SNP [dm3] 2R_17047434_SNP [dm6]	G	T	3.662e^-4	0.724	NON_SYNONYMOUS_CODING CG9642 DOWNSTREAM CG9640
2L	5091782	2L_5091782_SNP [dm3] 2L_5091782_SNP [dm6]	G	C	3.664e^-4	0.724	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
3L	7519869	3L_7519869_SNP [dm3] 3L_7526769_SNP [dm6]	C	T	3.679e^-4	0.724	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8634852	2R_8634852_SNP [dm3] 2R_12747347_SNP [dm6]	G	C	3.679e^-4	0.724	INTRON CG42663	TF binding site mE1_TFBS_cad
2R	8634861	2R_8634861_DEL [dm3] 2R_12747356_DEL [dm6]	ATACTTCACTTCTTTTACTA...	A	3.679e^-4	0.724	INTRON CG42663	TF binding site mE1_TFBS_cad
2R	8634890	2R_8634890_SNP [dm3] 2R_12747385_SNP [dm6]	C	T	3.679e^-4	0.724	INTRON CG42663
2R	8634898	2R_8634898_DEL [dm3] 2R_12747393_DEL [dm6]	ATGATAATGATAATA...	C	3.679e^-4	0.724	INTRON CG42663
2R	8634921	2R_8634921_SNP [dm3] 2R_12747416_SNP [dm6]	T	A	3.679e^-4	0.724	INTRON CG42663
2R	8634922	2R_8634922_DEL [dm3] 2R_12747417_DEL [dm6]	TTTTGA	T	3.679e^-4	0.724	INTRON CG42663
2R	8634938	2R_8634938_SNP [dm3] 2R_12747433_SNP [dm6]	T	A	3.679e^-4	0.724	INTRON CG42663
3L	15609753	3L_15609753_SNP [dm3] 3L_15616653_SNP [dm6]	G	A	3.686e^-4	0.724	INTRON comm3
3L	13247646	3L_13247646_SNP [dm3] 3L_13254546_SNP [dm6]	T	C	3.691e^-4	0.724	INTRON caps
2R	9924134	2R_9924134_SNP [dm3] 2R_14036629_SNP [dm6]	G	A	3.691e^-4	0.724	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	19425045	2L_19425045_SNP [dm3] 2L_19425045_SNP [dm6]	G	T	3.692e^-4	0.724	INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
3L	15931482	3L_15931482_SNP [dm3] 3L_15938382_SNP [dm6]	A	G	3.692e^-4	0.724	INTRON Pka-C3
2L	3665710	2L_3665710_SNP [dm3] 2L_3665710_SNP [dm6]	A	G	3.694e^-4	0.724	INTRON CG34340
3L	7065827	3L_7065827_SNP [dm3] 3L_7072727_SNP [dm6]	C	A	3.697e^-4	0.724	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
2L	13146476	2L_13146476_INS [dm3] 2L_13146476_INS [dm6]	A	ACTTGCTTAAGTATA...	3.702e^-4	0.724	UPSTREAM CR44199 INTERGENIC
3R	23018623	3R_23018623_SNP [dm3] 3R_27192901_SNP [dm6]	G	T	3.704e^-4	0.724	INTRON Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	14404192	3L_14404192_SNP [dm3] 3L_14411092_SNP [dm6]	G	A	3.711e^-4	0.724	UTR_5_PRIME CG3919 UPSTREAM CR45233	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14081941	3R_14081941_SNP [dm3] 3R_18256219_SNP [dm6]	C	T	3.715e^-4	0.724	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi UPSTREAM Rpb4 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15903775	3L_15903775_SNP [dm3] 3L_15910675_SNP [dm6]	C	G	3.731e^-4	0.724	INTRON sff	TF binding site mE1_TFBS_cad
3L	2149417	3L_2149417_SNP [dm3] 3L_2149417_SNP [dm6]	T	C	3.733e^-4	0.724	INTRON zormin
3R	13043067	3R_13043067_SNP [dm3] 3R_17217345_SNP [dm6]	T	C	3.737e^-4	0.724	INTRON CG31262
X	16153941	X_16153941_SNP [dm3] X_16259908_SNP [dm6]	G	T	3.741e^-4	0.724	INTERGENIC
3R	19760716	3R_19760716_SNP [dm3] 3R_23934994_SNP [dm6]	T	A	3.742e^-4	0.724	DOWNSTREAM Gdh INTRON CG5854	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18017319	3L_18017319_SNP [dm3] 3L_18024219_SNP [dm6]	T	C	3.747e^-4	0.724	INTRON Eip75B
2L	11082209	2L_11082209_SNP [dm3] 2L_11082209_SNP [dm6]	G	A	3.751e^-4	0.724	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18162123	2L_18162123_SNP [dm3] 2L_18162123_SNP [dm6]	T	C	3.753e^-4	0.724	INTRON CG42750
3R	24167398	3R_24167398_SNP [dm3] 3R_28341676_SNP [dm6]	G	C	3.755e^-4	0.724	UTR_5_PRIME Moca-cyp INTRON Moca-cyp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24171948	3R_24171948_SNP [dm3] 3R_28346226_SNP [dm6]	G	A	3.755e^-4	0.724	INTERGENIC
3L	1780766	3L_1780766_SNP [dm3] 3L_1780766_SNP [dm6]	A	C	3.757e^-4	0.724	INTRON alpha-Spec
X	11626654	X_11626654_SNP [dm3] X_11732621_SNP [dm6]	T	C	3.758e^-4	0.724	SYNONYMOUS_CODING inaF-B UPSTREAM inaF-C INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16709174	2L_16709174_SNP [dm3] 2L_16709174_SNP [dm6]	T	G	3.760e^-4	0.724	INTRON CG31808
3L	10571494	3L_10571494_SNP [dm3] 3L_10578394_SNP [dm6]	C	G	3.763e^-4	0.724	INTRON A2bp1
3L	22662327	3L_22662327_SNP [dm3] 3L_22669227_SNP [dm6]	T	C	3.763e^-4	0.724	UPSTREAM CG14457 DOWNSTREAM mir-958 INTRON CR43270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14161557	3L_14161557_SNP [dm3] 3L_14168457_SNP [dm6]	T	G	3.766e^-4	0.724	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	10801416	2L_10801416_SNP [dm3] 2L_10801416_SNP [dm6]	C	A	3.768e^-4	0.724	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
3L	15609602	3L_15609602_SNP [dm3] 3L_15616502_SNP [dm6]	A	G	3.770e^-4	0.724	INTRON comm3
2R	20406887	2R_20406887_SNP [dm3] 2R_24519364_SNP [dm6]	G	A	3.773e^-4	0.724	UPSTREAM Ir60d DOWNSTREAM Ir60c INTERGENIC	TF binding site mE1_TFBS_cad
2L	16638847	2L_16638847_SNP [dm3] 2L_16638847_SNP [dm6]	C	A	3.776e^-4	0.724	INTRON CG42389
2L	19426783	2L_19426783_SNP [dm3] 2L_19426783_SNP [dm6]	G	T	3.777e^-4	0.724	START_GAINED CG16771 UTR_5_PRIME CG16771 UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19426839	2L_19426839_SNP [dm3] 2L_19426839_SNP [dm6]	A	G	3.777e^-4	0.724	START_GAINED CG16771 UTR_5_PRIME CG16771 UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1792186	3L_1792186_DEL [dm3] 3L_1792186_DEL [dm6]	TCCT	T	3.781e^-4	0.724	CODON_DELETION dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16004428	3L_16004428_SNP [dm3] 3L_16011328_SNP [dm6]	G	A	3.786e^-4	0.724	SYNONYMOUS_CODING mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	11599267	3L_11599267_SNP [dm3] 3L_11606167_SNP [dm6]	G	C	3.790e^-4	0.724	SYNONYMOUS_CODING CG6091 UTR_3_PRIME CG6091 DOWNSTREAM CG7368
3L	11599288	3L_11599288_SNP [dm3] 3L_11606188_SNP [dm6]	T	C	3.790e^-4	0.724	SYNONYMOUS_CODING CG6091 UTR_3_PRIME CG6091 DOWNSTREAM CG7368
3R	14974488	3R_14974488_SNP [dm3] 3R_19148766_SNP [dm6]	C	T	3.792e^-4	0.724	UTR_3_PRIME CG5835 UPSTREAM Ppcs & 1 other	TF binding site mE1_TFBS_HSA
3R	9094676	3R_9094676_SNP [dm3] 3R_13268954_SNP [dm6]	C	T	3.794e^-4	0.724	UTR_3_PRIME Su_var_3-7 DOWNSTREAM CG8449	TF binding site mE1_TFBS_HSA
3L	10244302	3L_10244302_SNP [dm3] 3L_10251202_SNP [dm6]	T	C	3.800e^-4	0.724	INTERGENIC
2R	6621696	2R_6621696_SNP [dm3] 2R_10734191_SNP [dm6]	A	G	3.806e^-4	0.724	INTRON CG7220
3L	7901730	3L_7901730_SNP [dm3] 3L_7908630_SNP [dm6]	T	G	3.809e^-4	0.724	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	15388438	2L_15388438_SNP [dm3] 2L_15388438_SNP [dm6]	A	G	3.812e^-4	0.724	INTERGENIC
3L	10999092	3L_10999092_SNP [dm3] 3L_11005992_SNP [dm6]	A	C	3.813e^-4	0.724	INTRON klu
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	3.814e^-4	0.724	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	12664765	2L_12664765_SNP [dm3] 2L_12664765_SNP [dm6]	A	T	3.820e^-4	0.724	INTRON pdm2
3R	14367136	3R_14367136_SNP [dm3] 3R_18541414_SNP [dm6]	A	C	3.835e^-4	0.724	INTRON fru
2L	17890082	2L_17890082_SNP [dm3] 2L_17890082_SNP [dm6]	A	G	3.837e^-4	0.724	INTERGENIC
3R	23232453	3R_23232453_SNP [dm3] 3R_27406731_SNP [dm6]	A	G	3.837e^-4	0.724	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15719362	3L_15719362_SNP [dm3] 3L_15726262_SNP [dm6]	A	G	3.840e^-4	0.724	INTRON comm
3L	15986029	3L_15986029_SNP [dm3] 3L_15992929_SNP [dm6]	A	G	3.846e^-4	0.724	UTR_3_PRIME CG5830 DOWNSTREAM Hip14	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21134429	3L_21134429_SNP [dm3] 3L_21141329_SNP [dm6]	T	A	3.847e^-4	0.724	INTRON Ac78C
2R	3572277	2R_3572277_SNP [dm3] 2R_7684772_SNP [dm6]	A	T	3.852e^-4	0.724	INTRON CG1399
3R	24159455	3R_24159455_SNP [dm3] 3R_28333733_SNP [dm6]	T	A	3.859e^-4	0.724	SYNONYMOUS_CODING larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18849807	3L_18849807_SNP [dm3] 3L_18856707_SNP [dm6]	A	G	3.870e^-4	0.724	UPSTREAM CR45388 INTERGENIC
2L	5823494	2L_5823494_SNP [dm3] 2L_5823494_SNP [dm6]	C	G	3.880e^-4	0.724	UPSTREAM TrissinR INTERGENIC
2L	18370289	2L_18370289_DEL [dm3] 2L_18370289_DEL [dm6]	CTAATCTCATTAAC...	C	3.881e^-4	0.724	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17417260	2R_17417260_SNP [dm3] 2R_21529755_SNP [dm6]	A	T	3.886e^-4	0.724	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9810189	3L_9810189_SNP [dm3] 3L_9817089_SNP [dm6]	C	A	3.887e^-4	0.724	INTRON CG43897
3L	15609754	3L_15609754_SNP [dm3] 3L_15616654_SNP [dm6]	G	T	3.894e^-4	0.724	INTRON comm3
3R	12952187	3R_12952187_SNP [dm3] 3R_17126465_SNP [dm6]	C	T	3.896e^-4	0.724	NON_SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
2L	18348622	2L_18348622_SNP [dm3] 2L_18348622_SNP [dm6]	C	G	3.897e^-4	0.724	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25530959	3R_25530959_SNP [dm3] 3R_29705237_SNP [dm6]	G	C	3.909e^-4	0.724	INTERGENIC
3L	4655104	3L_4655104_SNP [dm3] 3L_4655104_SNP [dm6]	C	A	3.910e^-4	0.724	INTRON axo
2R	1291109	2R_1291109_SNP [dm3] 2R_5403604_SNP [dm6]	G	T	3.912e^-4	0.724	INTERGENIC
2L	19425443	2L_19425443_SNP [dm3] 2L_19425443_SNP [dm6]	G	T	3.918e^-4	0.724	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	6264947	2R_6264947_SNP [dm3] 2R_10377442_SNP [dm6]	C	A	3.919e^-4	0.724	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
2R	14155909	2R_14155909_SNP [dm3] 2R_18268404_SNP [dm6]	G	A	3.922e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23884181	3R_23884181_INS [dm3] 3R_28058459_INS [dm6]	T	TT	3.924e^-4	0.724	INTRON CG34362
2L	6849270	2L_6849270_SNP [dm3] 2L_6849270_SNP [dm6]	C	T	3.925e^-4	0.724	INTERGENIC
X	14235608	X_14235608_SNP [dm3] X_14341575_SNP [dm6]	C	A	3.926e^-4	0.724	INTRON dpr8
3R	9841009	3R_9841009_SNP [dm3] 3R_14015287_SNP [dm6]	A	T	3.929e^-4	0.724	INTRON rdx
X	2930933	X_2930933_SNP [dm3] X_3036900_SNP [dm6]	C	G	3.933e^-4	0.724	INTRON kirre

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.636e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01335
In_3R_Mo	0.03560

Kruskal-Wallis test

Covariate	χ²	p-value
In_2R_NS	8.3575	0.0153
In_3R_K	4.9563	0.0839
In_3R_Mo	4.9394	0.0846

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2101 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12982667	2L_12982667_SNP [dm3] 2L_12982667_SNP [dm6]	G	C	1.027e^-7	0.193	INTERGENIC
3L	6998227	3L_6998227_SNP [dm3] 3L_7005127_SNP [dm6]	C	T	3.664e^-7	0.343	INTRON Mp
2R	15292288	2R_15292288_SNP [dm3] 2R_19404783_SNP [dm6]	C	T	6.347e^-7	0.345	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10663956	3L_10663956_SNP [dm3] 3L_10670856_SNP [dm6]	A	G	7.367e^-7	0.345	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	1069101	2L_1069101_SNP [dm3] 2L_1069101_SNP [dm6]	T	A	1.050e^-6	0.389	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	12468774	3L_12468774_SNP [dm3] 3L_12475674_SNP [dm6]	G	A	1.779e^-6	0.389	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
3L	3639524	3L_3639524_SNP [dm3] 3L_3639524_SNP [dm6]	T	A	2.037e^-6	0.389	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12468660	3L_12468660_SNP [dm3] 3L_12475560_SNP [dm6]	G	A	2.122e^-6	0.389	INTRON CG10663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23301260	3R_23301260_SNP [dm3] 3R_27475538_SNP [dm6]	G	A	2.184e^-6	0.389	INTERGENIC
3L	3639532	3L_3639532_SNP [dm3] 3L_3639532_SNP [dm6]	G	T	2.221e^-6	0.389	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1235182	3L_1235182_SNP [dm3] 3L_1235182_SNP [dm6]	C	T	2.279e^-6	0.389	SYNONYMOUS_CODING CG33966 UPSTREAM CR45747 & 1 other
X	16047946	X_16047946_SNP [dm3] X_16153913_SNP [dm6]	T	A	2.578e^-6	0.403	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11178795	3L_11178795_SNP [dm3] 3L_11185695_SNP [dm6]	T	C	2.806e^-6	0.405	INTRON GlcAT-P
X	16063953	X_16063953_SNP [dm3] X_16169920_SNP [dm6]	G	A	4.019e^-6	0.444	INTERGENIC
X	16063952	X_16063952_SNP [dm3] X_16169919_SNP [dm6]	A	G	4.186e^-6	0.444	INTERGENIC
3L	3639513	3L_3639513_SNP [dm3] 3L_3639513_SNP [dm6]	T	G	4.222e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639469	3L_3639469_SNP [dm3] 3L_3639469_SNP [dm6]	A	T	4.295e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5732100	2L_5732100_SNP [dm3] 2L_5732100_SNP [dm6]	A	C	4.472e^-6	0.444	INTRON CG11030	TF binding site mE1_TFBS_HSA
3L	3639464	3L_3639464_SNP [dm3] 3L_3639464_SNP [dm6]	G	A	4.729e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639444	3L_3639444_DEL [dm3] 3L_3639444_DEL [dm6]	CTTAAGACAAA...	C	4.737e^-6	0.444	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639465	3L_3639465_SNP [dm3] 3L_3639465_SNP [dm6]	A	T	5.513e^-6	0.481	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16535990	3L_16535990_SNP [dm3] 3L_16542890_SNP [dm6]	C	T	5.645e^-6	0.481	INTRON CG43373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3916039	3L_3916039_SNP [dm3] 3L_3916039_SNP [dm6]	C	T	6.059e^-6	0.494	INTRON Eip63F-1
3L	16535074	3L_16535074_SNP [dm3] 3L_16541974_SNP [dm6]	T	C	6.613e^-6	0.502	INTRON CG43373
3L	3639494	3L_3639494_SNP [dm3] 3L_3639494_SNP [dm6]	T	G	6.927e^-6	0.502	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23542161	3R_23542161_SNP [dm3] 3R_27716439_SNP [dm6]	C	G	7.251e^-6	0.502	INTERGENIC
3R	23332511	3R_23332511_SNP [dm3] 3R_27506789_SNP [dm6]	T	C	7.395e^-6	0.502	INTERGENIC
2L	17884138	2L_17884138_SNP [dm3] 2L_17884138_SNP [dm6]	C	T	7.877e^-6	0.502	INTERGENIC
3L	5687833	3L_5687833_SNP [dm3] 3L_5694733_SNP [dm6]	T	A	7.954e^-6	0.502	INTRON sif
3L	3639478	3L_3639478_SNP [dm3] 3L_3639478_SNP [dm6]	T	G	8.200e^-6	0.502	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15581655	X_15581655_SNP [dm3] X_15687622_SNP [dm6]	T	A	8.410e^-6	0.502	INTRON CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17884110	2L_17884110_SNP [dm3] 2L_17884110_SNP [dm6]	G	A	8.791e^-6	0.502	INTERGENIC
2L	1069078	2L_1069078_DEL [dm3] 2L_1069078_DEL [dm6]	TGAAAACAGCACACTAT...	T	8.829e^-6	0.502	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	3639497	3L_3639497_SNP [dm3] 3L_3639497_SNP [dm6]	T	A	9.272e^-6	0.502	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16536053	3L_16536053_SNP [dm3] 3L_16542953_SNP [dm6]	T	A	9.609e^-6	0.502	INTRON CG43373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7344137	3L_7344137_SNP [dm3] 3L_7351037_SNP [dm6]	A	C	9.646e^-6	0.502	INTRON qm
3L	6717938	3L_6717938_SNP [dm3] 3L_6724838_SNP [dm6]	C	A	1.007e^-5	0.503	DOWNSTREAM CR44523 INTERGENIC	regulatory region REDfly_CRMs
X	3861980	X_3861980_SNP [dm3] X_3967947_SNP [dm6]	A	C	1.019e^-5	0.503	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	1.111e^-5	0.509	INTERGENIC
2L	16369224	2L_16369224_SNP [dm3] 2L_16369224_SNP [dm6]	G	C	1.144e^-5	0.509	INTERGENIC
2L	5732098	2L_5732098_SNP [dm3] 2L_5732098_SNP [dm6]	C	T	1.233e^-5	0.509	INTRON CG11030	TF binding site mE1_TFBS_HSA
2L	14141750	2L_14141750_SNP [dm3] 2L_14141750_SNP [dm6]	C	A	1.244e^-5	0.509	INTRON CG17341
X	3862021	X_3862021_SNP [dm3] X_3967988_SNP [dm6]	T	A	1.253e^-5	0.509	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
X	20406045	X_20406045_DEL [dm3] X_20535018_DEL [dm6]	AA	A	1.259e^-5	0.509	INTERGENIC
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	1.285e^-5	0.509	INTERGENIC
2R	4377596	2R_4377596_SNP [dm3] 2R_8490091_SNP [dm6]	T	A	1.286e^-5	0.509	INTRON mtt
3R	11742996	3R_11742996_SNP [dm3] 3R_15917274_SNP [dm6]	C	A	1.320e^-5	0.509	UPSTREAM CG45105 INTRON CG45105
2L	14143252	2L_14143252_SNP [dm3] 2L_14143252_SNP [dm6]	T	C	1.324e^-5	0.509	INTRON CG17341
3L	3639496	3L_3639496_SNP [dm3] 3L_3639496_SNP [dm6]	G	A	1.330e^-5	0.509	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3674083	2L_3674083_SNP [dm3] 2L_3674083_SNP [dm6]	T	C	1.393e^-5	0.522	INTRON CG34340
X	2161724	X_2161724_SNP [dm3] X_2267691_SNP [dm6]	G	A	1.451e^-5	0.534	INTRON CG2924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6709317	2R_6709317_SNP [dm3] 2R_10821812_SNP [dm6]	T	C	1.822e^-5	0.632	UTR_5_PRIME RpS15Ab UPSTREAM Lsm10 DOWNSTREAM Prosbeta5 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1251710	3L_1251710_SNP [dm3] 3L_1251710_SNP [dm6]	T	C	1.931e^-5	0.632	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
3L	17223080	3L_17223080_SNP [dm3] 3L_17229980_SNP [dm6]	C	A	1.946e^-5	0.632	INTRON Rbp6
3R	22380944	3R_22380944_SNP [dm3] 3R_26555222_SNP [dm6]	C	T	1.952e^-5	0.632	INTRON scrib
2R	2038754	2R_2038754_INS [dm3] 2R_6151249_INS [dm6]	T	TTT	1.976e^-5	0.632	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	20064228	3L_20064228_SNP [dm3] 3L_20071128_SNP [dm6]	T	A	2.015e^-5	0.632	INTRON sNPF-R
3L	20064231	3L_20064231_SNP [dm3] 3L_20071131_SNP [dm6]	G	C	2.015e^-5	0.632	INTRON sNPF-R
3L	20064313	3L_20064313_SNP [dm3] 3L_20071213_SNP [dm6]	C	T	2.015e^-5	0.632	INTRON sNPF-R
3L	20064176	3L_20064176_DEL [dm3] 3L_20071076_DEL [dm6]	AATATCCCAAA...	A	2.140e^-5	0.632	INTRON sNPF-R
3L	1260886	3L_1260886_SNP [dm3] 3L_1260886_SNP [dm6]	T	A	2.160e^-5	0.632	INTRON CG9134
3R	16628213	3R_16628213_SNP [dm3] 3R_20802491_SNP [dm6]	T	G	2.174e^-5	0.632	NON_SYNONYMOUS_CODING Syp INTRON Syp
3L	15251925	3L_15251925_SNP [dm3] 3L_15258825_SNP [dm6]	A	G	2.177e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14154733	X_14154733_INS [dm3] X_14260700_INS [dm6]	T	TG	2.190e^-5	0.632	UPSTREAM CG1461 INTERGENIC
X	14154735	X_14154735_SNP [dm3] X_14260702_SNP [dm6]	A	G	2.190e^-5	0.632	UPSTREAM CG1461 INTERGENIC
3R	18527555	3R_18527555_SNP [dm3] 3R_22701833_SNP [dm6]	C	A	2.278e^-5	0.647	UTR_5_PRIME CCAP UPSTREAM CG6972 & 1 other	TF binding site mE1_TFBS_HSA
2L	18629399	2L_18629399_SNP [dm3] 2L_18629399_SNP [dm6]	T	C	2.433e^-5	0.659	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12468633	3L_12468633_SNP [dm3] 3L_12475533_SNP [dm6]	G	T	2.465e^-5	0.659	INTRON CG10663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17274077	X_17274077_SNP [dm3] X_17380044_SNP [dm6]	T	G	2.471e^-5	0.659	INTERGENIC
2L	1069047	2L_1069047_SNP [dm3] 2L_1069047_SNP [dm6]	A	G	2.480e^-5	0.659	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1213136	2L_1213136_SNP [dm3] 2L_1213136_SNP [dm6]	A	G	2.495e^-5	0.659	INTERGENIC
2L	3673391	2L_3673391_SNP [dm3] 2L_3673391_SNP [dm6]	A	T	2.547e^-5	0.663	INTRON CG34340
3L	1266870	3L_1266870_SNP [dm3] 3L_1266870_SNP [dm6]	C	A	2.678e^-5	0.669	INTRON CG9134
3R	16628201	3R_16628201_SNP [dm3] 3R_20802479_SNP [dm6]	T	G	2.695e^-5	0.669	NON_SYNONYMOUS_CODING Syp INTRON Syp
3R	16628115	3R_16628115_SNP [dm3] 3R_20802393_SNP [dm6]	G	C	2.701e^-5	0.669	NON_SYNONYMOUS_CODING Syp SYNONYMOUS_CODING Syp INTRON Syp
3R	16521700	3R_16521700_SNP [dm3] 3R_20695978_SNP [dm6]	A	T	2.710e^-5	0.669	INTRON Oamb
3R	15976785	3R_15976785_SNP [dm3] 3R_20151063_SNP [dm6]	A	C	2.890e^-5	0.695	INTERGENIC
2L	1093738	2L_1093738_SNP [dm3] 2L_1093738_SNP [dm6]	C	A	2.892e^-5	0.695	INTRON CG4629
2L	18625359	2L_18625359_SNP [dm3] 2L_18625359_SNP [dm6]	G	C	2.939e^-5	0.695	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6503843	2R_6503843_SNP [dm3] 2R_10616338_SNP [dm6]	A	C	2.995e^-5	0.695	UTR_3_PRIME psq DOWNSTREAM psq
2L	2121237	2L_2121237_SNP [dm3] 2L_2121237_SNP [dm6]	A	T	3.022e^-5	0.695	INTERGENIC
2L	14143140	2L_14143140_SNP [dm3] 2L_14143140_SNP [dm6]	T	C	3.038e^-5	0.695	INTRON CG17341
3L	2311391	3L_2311391_SNP [dm3] 3L_2311391_SNP [dm6]	A	C	3.168e^-5	0.703	INTERGENIC
3R	15976933	3R_15976933_SNP [dm3] 3R_20151211_SNP [dm6]	A	G	3.178e^-5	0.703	INTERGENIC
2L	1213704	2L_1213704_SNP [dm3] 2L_1213704_SNP [dm6]	T	A	3.318e^-5	0.703	DOWNSTREAM CR45346 INTERGENIC
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	3.397e^-5	0.703	INTRON Con
3L	3639540	3L_3639540_SNP [dm3] 3L_3639540_SNP [dm6]	T	C	3.451e^-5	0.703	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1068606	2L_1068606_SNP [dm3] 2L_1068606_SNP [dm6]	C	T	3.472e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068607	2L_1068607_SNP [dm3] 2L_1068607_SNP [dm6]	C	T	3.472e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1068609	2L_1068609_SNP [dm3] 2L_1068609_SNP [dm6]	A	G	3.472e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18796633	3R_18796633_SNP [dm3] 3R_22970911_SNP [dm6]	T	C	3.473e^-5	0.703	INTERGENIC
2L	1069128	2L_1069128_SNP [dm3] 2L_1069128_SNP [dm6]	T	C	3.485e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	1263692	3L_1263692_SNP [dm3] 3L_1263692_SNP [dm6]	C	A	3.512e^-5	0.703	INTRON CG9134
2L	1069104	2L_1069104_SNP [dm3] 2L_1069104_SNP [dm6]	A	C	3.526e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1068402	2L_1068402_SNP [dm3] 2L_1068402_SNP [dm6]	A	G	3.592e^-5	0.703	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19599284	X_19599284_SNP [dm3] X_19705251_SNP [dm6]	G	C	3.611e^-5	0.703	SYNONYMOUS_CODING CG14230 UPSTREAM CG14232	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25279755	3R_25279755_SNP [dm3] 3R_29454033_SNP [dm6]	T	A	3.636e^-5	0.703	INTRON Ptp99A
3L	10663935	3L_10663935_INS [dm3] 3L_10670835_INS [dm6]	G	GTGAACTCTATCTCGGAAGC...	3.717e^-5	0.706	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	2525966	2L_2525966_SNP [dm3] 2L_2525966_SNP [dm6]	G	T	3.759e^-5	0.706	INTERGENIC
2R	17867506	2R_17867506_SNP [dm3] 2R_21980001_SNP [dm6]	G	A	3.765e^-5	0.706	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3L	3639490	3L_3639490_SNP [dm3] 3L_3639490_SNP [dm6]	G	A	3.809e^-5	0.707	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15292360	2R_15292360_SNP [dm3] 2R_19404855_SNP [dm6]	G	A	3.888e^-5	0.708	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13347247	3L_13347247_SNP [dm3] 3L_13354147_SNP [dm6]	T	A	3.900e^-5	0.708	INTRON CG17687
2R	10568582	2R_10568582_SNP [dm3] 2R_14681077_SNP [dm6]	G	A	3.938e^-5	0.708	INTRON mspo
3L	9574851	3L_9574851_SNP [dm3] 3L_9581751_SNP [dm6]	A	C	3.963e^-5	0.708	INTRON CG42673
3L	9787897	3L_9787897_SNP [dm3] 3L_9794797_SNP [dm6]	G	T	4.034e^-5	0.714	INTRON Zasp67
2L	17890587	2L_17890587_SNP [dm3] 2L_17890587_SNP [dm6]	G	A	4.078e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17891515	2L_17891515_DEL [dm3] 2L_17891515_DEL [dm6]	TGTCAGCAGTGACTTTGGTT...	T	4.178e^-5	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9502906	2L_9502906_SNP [dm3] 2L_9502906_SNP [dm6]	G	A	4.278e^-5	0.735	INTRON CG33298
X	2058691	X_2058691_INS [dm3] X_2164658_INS [dm6]	T	TT	4.331e^-5	0.735	INTRON CG3630
3R	16521495	3R_16521495_DEL [dm3] 3R_20695773_DEL [dm6]	GG	G	4.351e^-5	0.735	INTRON Oamb
2L	9533199	2L_9533199_DEL [dm3] 2L_9533199_DEL [dm6]	CAGTGGC	C	4.630e^-5	0.775	INTRON Oatp30B
3R	3246220	3R_3246220_SNP [dm3] 3R_7420498_SNP [dm6]	C	G	4.671e^-5	0.775	NON_SYNONYMOUS_CODING CG34023 UPSTREAM wa-cup DOWNSTREAM CG31544
3R	23295244	3R_23295244_SNP [dm3] 3R_27469522_SNP [dm6]	G	A	4.761e^-5	0.783	INTERGENIC
2R	16571550	2R_16571550_SNP [dm3] 2R_20684045_SNP [dm6]	C	T	4.810e^-5	0.784	INTERGENIC
3L	1236052	3L_1236052_SNP [dm3] 3L_1236052_SNP [dm6]	C	T	4.909e^-5	0.794	DOWNSTREAM CG33966 & 1 other INTRON CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16502797	2R_16502797_SNP [dm3] 2R_20615292_SNP [dm6]	T	C	5.002e^-5	0.796	INTRON Hil
X	15401374	X_15401374_SNP [dm3] X_15507341_SNP [dm6]	C	A	5.194e^-5	0.796	UPSTREAM mir-283 INTRON Gmap	TF binding site mE1_TFBS_HSA
3L	3639425	3L_3639425_SNP [dm3] 3L_3639425_SNP [dm6]	A	T	5.220e^-5	0.796	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17173391	X_17173391_SNP [dm3] X_17279358_SNP [dm6]	A	C	5.226e^-5	0.796	INTRON f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	606015	3L_606015_SNP [dm3] 3L_606015_SNP [dm6]	A	G	5.273e^-5	0.796	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2R	7656128	2R_7656128_SNP [dm3] 2R_11768623_SNP [dm6]	A	G	5.296e^-5	0.796	INTRON ths & 1 other
X	691211	X_691211_SNP [dm3] X_797178_SNP [dm6]	A	G	5.342e^-5	0.796	UTR_3_PRIME Rbf DOWNSTREAM CG16989	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16301362	3R_16301362_SNP [dm3] 3R_20475640_SNP [dm6]	T	C	5.361e^-5	0.796	INTRON Gfrl
X	3861922	X_3861922_SNP [dm3] X_3967889_SNP [dm6]	A	T	5.541e^-5	0.796	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
2R	17867520	2R_17867520_SNP [dm3] 2R_21980015_SNP [dm6]	A	T	5.550e^-5	0.796	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
2R	16571548	2R_16571548_INS [dm3] 2R_20684043_INS [dm6]	C	CCA	5.572e^-5	0.796	INTERGENIC
2R	14827530	2R_14827530_SNP [dm3] 2R_18940025_SNP [dm6]	A	C	5.654e^-5	0.796	INTRON sano
X	3861865	X_3861865_SNP [dm3] X_3967832_SNP [dm6]	T	C	5.657e^-5	0.796	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
3L	1259798	3L_1259798_SNP [dm3] 3L_1259798_SNP [dm6]	A	G	5.696e^-5	0.796	INTRON CG9134
2L	1069607	2L_1069607_SNP [dm3] 2L_1069607_SNP [dm6]	G	A	5.703e^-5	0.796	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13940057	2L_13940057_SNP [dm3] 2L_13940057_SNP [dm6]	T	C	5.729e^-5	0.796	INTRON Ance-3
3R	16301370	3R_16301370_SNP [dm3] 3R_20475648_SNP [dm6]	G	T	5.736e^-5	0.796	INTRON Gfrl
3R	19750793	3R_19750793_SNP [dm3] 3R_23925071_SNP [dm6]	T	C	5.747e^-5	0.796	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14054454	3L_14054454_SNP [dm3] 3L_14061354_SNP [dm6]	A	G	5.758e^-5	0.796	INTRON CG32138
3R	11826984	3R_11826984_SNP [dm3] 3R_16001262_SNP [dm6]	T	C	5.781e^-5	0.796	SYNONYMOUS_CODING srp INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	19104259	2L_19104259_SNP [dm3] 2L_19104259_SNP [dm6]	G	T	5.861e^-5	0.796	INTRON Lim3	TF binding site mE1_TFBS_cad
2L	7851380	2L_7851380_SNP [dm3] 2L_7851380_SNP [dm6]	G	C	5.939e^-5	0.796	INTRON CG14535
3R	16301345	3R_16301345_SNP [dm3] 3R_20475623_SNP [dm6]	G	T	5.990e^-5	0.796	INTRON Gfrl
3R	16301368	3R_16301368_SNP [dm3] 3R_20475646_SNP [dm6]	C	T	6.072e^-5	0.796	INTRON Gfrl
3R	18373289	3R_18373289_SNP [dm3] 3R_22547567_SNP [dm6]	C	A	6.100e^-5	0.796	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1259579	3L_1259579_SNP [dm3] 3L_1259579_SNP [dm6]	T	C	6.115e^-5	0.796	INTRON CG9134
3R	16644209	3R_16644209_SNP [dm3] 3R_20818487_SNP [dm6]	G	A	6.146e^-5	0.796	DOWNSTREAM CG17271 INTRON CG17270
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	6.200e^-5	0.796	INTRON fru	TF binding site BDTNP1_TFBS_da
3R	16301359	3R_16301359_SNP [dm3] 3R_20475637_SNP [dm6]	G	A	6.207e^-5	0.796	INTRON Gfrl
X	3861973	X_3861973_SNP [dm3] X_3967940_SNP [dm6]	C	T	6.288e^-5	0.796	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
2L	1068389	2L_1068389_SNP [dm3] 2L_1068389_SNP [dm6]	G	A	6.320e^-5	0.796	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1254175	3L_1254175_SNP [dm3] 3L_1254175_SNP [dm6]	C	A	6.356e^-5	0.796	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo
3R	16301381	3R_16301381_DEL [dm3] 3R_20475659_DEL [dm6]	TAT	T	6.362e^-5	0.796	INTRON Gfrl
3R	16301335	3R_16301335_INS [dm3] 3R_20475613_INS [dm6]	T	TCA	6.365e^-5	0.796	INTRON Gfrl
X	14878439	X_14878439_SNP [dm3] X_14984406_SNP [dm6]	T	A	6.457e^-5	0.797	INTRON eag	TF binding site BDTNP1_TFBS_dl
3R	16301469	3R_16301469_SNP [dm3] 3R_20475747_SNP [dm6]	T	A	6.549e^-5	0.797	INTRON Gfrl
2L	14137408	2L_14137408_SNP [dm3] 2L_14137408_SNP [dm6]	C	T	6.551e^-5	0.797	INTRON CG17341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9014596	3L_9014596_SNP [dm3] 3L_9021496_SNP [dm6]	C	T	6.559e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8101274	X_8101274_SNP [dm3] X_8207241_SNP [dm6]	G	T	6.676e^-5	0.797	INTRON sdt
X	17178401	X_17178401_SNP [dm3] X_17284368_SNP [dm6]	A	G	6.688e^-5	0.797	NON_SYNONYMOUS_CODING CG8661 SPLICE_SITE_REGION CG8661 INTRON CG5445
3L	7100398	3L_7100398_SNP [dm3] 3L_7107298_SNP [dm6]	T	C	6.720e^-5	0.797	INTRON form3
3R	15980321	3R_15980321_SNP [dm3] 3R_20154599_SNP [dm6]	G	T	6.790e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	18375475	3R_18375475_SNP [dm3] 3R_22549753_SNP [dm6]	C	T	6.809e^-5	0.797	UPSTREAM bond DOWNSTREAM CR44062 INTERGENIC
2L	6138743	2L_6138743_SNP [dm3] 2L_6138743_SNP [dm6]	T	A	6.810e^-5	0.797	UPSTREAM CG13991 DOWNSTREAM CR44824 INTERGENIC
2L	17893712	2L_17893712_SNP [dm3] 2L_17893712_SNP [dm6]	T	C	6.901e^-5	0.797	UPSTREAM CR43420 INTERGENIC
3R	16301420	3R_16301420_SNP [dm3] 3R_20475698_SNP [dm6]	A	T	6.927e^-5	0.797	INTRON Gfrl
3R	16301429	3R_16301429_SNP [dm3] 3R_20475707_SNP [dm6]	T	C	6.927e^-5	0.797	INTRON Gfrl
2L	9502864	2L_9502864_SNP [dm3] 2L_9502864_SNP [dm6]	A	G	6.988e^-5	0.799	INTRON CG33298
3R	6877888	3R_6877888_SNP [dm3] 3R_11052166_SNP [dm6]	A	T	7.171e^-5	0.815	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20626106	X_20626106_DEL [dm3] X_20755079_DEL [dm6]	AA	A	7.230e^-5	0.816	INTERGENIC
2L	14139321	2L_14139321_SNP [dm3] 2L_14139321_SNP [dm6]	T	C	7.270e^-5	0.816	INTRON CG17341
2R	17862432	2R_17862432_DEL [dm3] 2R_21974927_DEL [dm6]	TT	T	7.486e^-5	0.825	INTRON CG9304
2R	17862422	2R_17862422_SNP [dm3] 2R_21974917_SNP [dm6]	C	T	7.521e^-5	0.825	INTRON CG9304
3R	15977738	3R_15977738_SNP [dm3] 3R_20152016_SNP [dm6]	A	T	7.537e^-5	0.825	INTERGENIC
2L	910348	2L_910348_SNP [dm3] 2L_910348_SNP [dm6]	C	A	7.567e^-5	0.825	INTERGENIC
2L	4259951	2L_4259951_SNP [dm3] 2L_4259951_SNP [dm6]	G	T	7.648e^-5	0.825	EXON CR44080
3L	18658348	3L_18658348_SNP [dm3] 3L_18665248_SNP [dm6]	A	G	7.657e^-5	0.825	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
2L	8304840	2L_8304840_SNP [dm3] 2L_8304840_SNP [dm6]	A	G	7.725e^-5	0.825	SPLICE_SITE_REGION Scgalpha UPSTREAM CG7840 INTRON Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9185382	X_9185382_DEL [dm3] X_9291349_DEL [dm6]	AGCTCG	A	7.801e^-5	0.825	INTRON lz
3L	3144522	3L_3144522_SNP [dm3] 3L_3144522_SNP [dm6]	T	C	7.804e^-5	0.825	SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3637887	2L_3637887_SNP [dm3] 2L_3637887_SNP [dm6]	A	G	7.818e^-5	0.825	UPSTREAM mir-4972 INTRON for
3R	15992239	3R_15992239_SNP [dm3] 3R_20166517_SNP [dm6]	T	C	7.829e^-5	0.825	INTERGENIC
2R	19073694	2R_19073694_SNP [dm3] 2R_23186171_SNP [dm6]	A	C	8.002e^-5	0.83	DOWNSTREAM CG13539 INTRON CG34371
3R	18373270	3R_18373270_SNP [dm3] 3R_22547548_SNP [dm6]	A	G	8.014e^-5	0.83	UTR_5_PRIME AdipoR UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15992146	3R_15992146_DEL [dm3] 3R_20166424_DEL [dm6]	TGTG	T	8.050e^-5	0.83	INTERGENIC
3L	3639542	3L_3639542_SNP [dm3] 3L_3639542_SNP [dm6]	G	A	8.056e^-5	0.83	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1277481	3L_1277481_SNP [dm3] 3L_1277481_SNP [dm6]	C	T	8.173e^-5	0.836	INTRON CG32333
3R	16301485	3R_16301485_SNP [dm3] 3R_20475763_SNP [dm6]	T	A	8.224e^-5	0.836	INTRON Gfrl
3R	16627413	3R_16627413_INS [dm3] 3R_20801691_INS [dm6]	A	AACGACCAATTCTAAAT...	8.244e^-5	0.836	INTRON Syp
2L	5731525	2L_5731525_SNP [dm3] 2L_5731525_SNP [dm6]	C	A	8.415e^-5	0.842	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2077864	2R_2077864_SNP [dm3] 2R_6190359_SNP [dm6]	C	T	8.459e^-5	0.842	UPSTREAM tRNA:N5:42Ad & 1 other INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	1100883	2L_1100883_SNP [dm3] 2L_1100883_SNP [dm6]	A	G	8.482e^-5	0.842	INTRON CG4629
3R	26302013	3R_26302013_SNP [dm3] 3R_30476291_SNP [dm6]	A	G	8.489e^-5	0.842	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6265650	2L_6265650_SNP [dm3] 2L_6265650_SNP [dm6]	G	C	8.564e^-5	0.844	INTRON Ddr
3L	606029	3L_606029_SNP [dm3] 3L_606029_SNP [dm6]	T	A	8.695e^-5	0.844	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2L	20256304	2L_20256304_SNP [dm3] 2L_20256304_SNP [dm6]	C	T	8.743e^-5	0.844	SYNONYMOUS_CODING CG17571	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17885665	2L_17885665_SNP [dm3] 2L_17885665_SNP [dm6]	A	G	8.783e^-5	0.844	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15288797	2R_15288797_SNP [dm3] 2R_19401292_SNP [dm6]	G	C	8.814e^-5	0.844	NON_SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
2L	2251390	2L_2251390_SNP [dm3] 2L_2251390_SNP [dm6]	A	T	9.065e^-5	0.844	UPSTREAM Ser12 DOWNSTREAM CG17239 INTERGENIC
2R	12771201	2R_12771201_SNP [dm3] 2R_16883696_SNP [dm6]	C	A	9.087e^-5	0.844	SYNONYMOUS_CODING CG6472 INTRON CG8910	TF binding site mE1_TFBS_chinmo
2L	17886754	2L_17886754_SNP [dm3] 2L_17886754_SNP [dm6]	A	C	9.120e^-5	0.844	INTERGENIC
2L	17886806	2L_17886806_SNP [dm3] 2L_17886806_SNP [dm6]	C	G	9.120e^-5	0.844	INTERGENIC
2R	17867364	2R_17867364_SNP [dm3] 2R_21979859_SNP [dm6]	A	T	9.142e^-5	0.844	UPSTREAM Gr58a & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	1627590	2L_1627590_SNP [dm3] 2L_1627590_SNP [dm6]	G	T	9.155e^-5	0.844	INTERGENIC
2L	1173011	2L_1173011_SNP [dm3] 2L_1173011_SNP [dm6]	T	C	9.206e^-5	0.844	UTR_5_PRIME CG4887 UPSTREAM CG5118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17874134	3L_17874134_SNP [dm3] 3L_17881034_SNP [dm6]	T	G	9.213e^-5	0.844	INTRON CG7408
2L	17944472	2L_17944472_DEL [dm3] 2L_17944472_DEL [dm6]	GGAAAGGAAATTCGGCGTCC...	G	9.218e^-5	0.844	INTERGENIC
X	679386	X_679386_SNP [dm3] X_785353_SNP [dm6]	A	T	9.259e^-5	0.844	INTRON tw	TF binding site mE1_TFBS_sens
3L	3639531	3L_3639531_SNP [dm3] 3L_3639531_SNP [dm6]	T	G	9.395e^-5	0.844	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15288821	3L_15288821_SNP [dm3] 3L_15295721_SNP [dm6]	A	G	9.463e^-5	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19894144	X_19894144_SNP [dm3] X_20000111_SNP [dm6]	G	A	9.643e^-5	0.844	DOWNSTREAM CG17003 INTERGENIC
3L	19642047	3L_19642047_SNP [dm3] 3L_19648947_SNP [dm6]	G	A	9.654e^-5	0.844	INTRON Oat
2R	12771647	2R_12771647_SNP [dm3] 2R_16884142_SNP [dm6]	A	T	9.682e^-5	0.844	NON_SYNONYMOUS_CODING CG6472 INTRON CG8910
3L	920192	3L_920192_SNP [dm3] 3L_920192_SNP [dm6]	T	C	9.758e^-5	0.844	INTRON Glut1
2R	15769174	2R_15769174_SNP [dm3] 2R_19881669_SNP [dm6]	T	A	9.815e^-5	0.844	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18373213	3R_18373213_SNP [dm3] 3R_22547491_SNP [dm6]	G	T	9.816e^-5	0.844	UTR_5_PRIME AdipoR UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14043617	3R_14043617_SNP [dm3] 3R_18217895_SNP [dm6]	G	C	9.871e^-5	0.844	UTR_3_PRIME CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad
2R	9447584	2R_9447584_SNP [dm3] 2R_13560079_SNP [dm6]	T	A	9.893e^-5	0.844	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	10087198	X_10087198_SNP [dm3] X_10193165_SNP [dm6]	A	G	9.922e^-5	0.844	UTR_3_PRIME CG43902 INTRON CR44894
3R	5342124	3R_5342124_SNP [dm3] 3R_9516402_SNP [dm6]	C	T	9.937e^-5	0.844	UPSTREAM mRpL47 & 2 others INTRON JHDM2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	15981618	3R_15981618_SNP [dm3] 3R_20155896_SNP [dm6]	T	A	9.990e^-5	0.844	INTERGENIC
3R	15993535	3R_15993535_SNP [dm3] 3R_20167813_SNP [dm6]	A	G	9.990e^-5	0.844	INTERGENIC
3L	606006	3L_606006_SNP [dm3] 3L_606006_SNP [dm6]	C	A	1.001e^-4	0.844	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2L	13012008	2L_13012008_SNP [dm3] 2L_13012008_SNP [dm6]	T	C	1.017e^-4	0.844	SYNONYMOUS_CODING Tor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	679312	X_679312_SNP [dm3] X_785279_SNP [dm6]	C	T	1.020e^-4	0.844	SYNONYMOUS_CODING tw	TF binding site mE1_TFBS_sens
2R	19227548	2R_19227548_INS [dm3] 2R_23340025_INS [dm6]	G	GCCAGTCCGTCCG...	1.024e^-4	0.844	INTERGENIC
3R	17183180	3R_17183180_SNP [dm3] 3R_21357458_SNP [dm6]	G	T	1.024e^-4	0.844	UTR_5_PRIME pre-mod_mdg4_-B & 1 other UTR_3_PRIME pre-mod_mdg4_-P & 2 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3L	1262612	3L_1262612_SNP [dm3] 3L_1262612_SNP [dm6]	C	T	1.038e^-4	0.844	INTRON CG9134
2R	7972353	2R_7972353_DEL [dm3] 2R_12084848_DEL [dm6]	TAAATTGAATT...	T	1.040e^-4	0.844	DOWNSTREAM jeb INTERGENIC
2R	18334149	2R_18334149_SNP [dm3] 2R_22446644_SNP [dm6]	C	A	1.041e^-4	0.844	INTERGENIC
2L	13287810	2L_13287810_SNP [dm3] 2L_13287810_SNP [dm6]	G	A	1.044e^-4	0.844	NON_SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
2L	18622039	2L_18622039_SNP [dm3] 2L_18622039_SNP [dm6]	G	A	1.054e^-4	0.844	INTRON MESR3
3R	6877932	3R_6877932_SNP [dm3] 3R_11052210_SNP [dm6]	A	T	1.056e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12987354	2L_12987354_DEL [dm3] 2L_12987354_DEL [dm6]	TA	T	1.059e^-4	0.844	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17390416	3L_17390416_SNP [dm3] 3L_17397316_SNP [dm6]	T	A	1.060e^-4	0.844	SYNONYMOUS_CODING blot
2L	2654033	2L_2654033_SNP [dm3] 2L_2654033_SNP [dm6]	C	T	1.062e^-4	0.844	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
3R	16013032	3R_16013032_SNP [dm3] 3R_20187310_SNP [dm6]	A	C	1.069e^-4	0.844	INTERGENIC
3R	16013033	3R_16013033_SNP [dm3] 3R_20187311_SNP [dm6]	T	C	1.069e^-4	0.844	INTERGENIC
3R	5503024	3R_5503024_SNP [dm3] 3R_9677302_SNP [dm6]	C	T	1.072e^-4	0.844	SYNONYMOUS_CODING CG8358 UPSTREAM CG16817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	19894112	X_19894112_SNP [dm3] X_20000079_SNP [dm6]	G	A	1.074e^-4	0.844	DOWNSTREAM CG17003 INTERGENIC
2R	10514827	2R_10514827_SNP [dm3] 2R_14627322_SNP [dm6]	T	C	1.113e^-4	0.844	INTERGENIC
2L	17885254	2L_17885254_INS [dm3] 2L_17885254_INS [dm6]	C	CCCGCACACCT...	1.117e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25266674	3R_25266674_MNP [dm3] 3R_29440952_MNP [dm6]	GCT	ATA	1.123e^-4	0.844	INTRON Ptp99A
3R	19776757	3R_19776757_SNP [dm3] 3R_23951035_SNP [dm6]	A	G	1.124e^-4	0.844	INTERGENIC
3R	15995370	3R_15995370_SNP [dm3] 3R_20169648_SNP [dm6]	C	G	1.129e^-4	0.844	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18606841	2R_18606841_SNP [dm3] 2R_22719336_SNP [dm6]	G	A	1.135e^-4	0.844	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9023736	3L_9023736_SNP [dm3] 3L_9030636_SNP [dm6]	C	G	1.138e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16013002	3R_16013002_SNP [dm3] 3R_20187280_SNP [dm6]	A	T	1.138e^-4	0.844	INTERGENIC
2L	14456026	2L_14456026_SNP [dm3] 2L_14456026_SNP [dm6]	A	G	1.138e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
3L	1245085	3L_1245085_SNP [dm3] 3L_1245085_SNP [dm6]	C	A	1.144e^-4	0.844	DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
2L	20074148	2L_20074148_INS [dm3] 2L_20074148_INS [dm6]	A	AA	1.154e^-4	0.844	DOWNSTREAM bwa INTRON pr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6427571	3R_6427571_SNP [dm3] 3R_10601849_SNP [dm6]	G	C	1.160e^-4	0.844	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16012979	3R_16012979_DEL [dm3] 3R_20187257_DEL [dm6]	TACCAGTTATTGGATATAGT...	T	1.189e^-4	0.844	INTERGENIC
2R	18556750	2R_18556750_SNP [dm3] 2R_22669245_SNP [dm6]	C	T	1.195e^-4	0.844	START_GAINED CG13516 UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
2R	14719160	2R_14719160_SNP [dm3] 2R_18831655_SNP [dm6]	A	T	1.199e^-4	0.844	INTRON CG15082
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	1.199e^-4	0.844	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2R	13849309	2R_13849309_SNP [dm3] 2R_17961804_SNP [dm6]	C	T	1.201e^-4	0.844	INTERGENIC
3L	3146452	3L_3146452_SNP [dm3] 3L_3146452_SNP [dm6]	C	G	1.228e^-4	0.844	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo
2L	20290293	2L_20290293_SNP [dm3] 2L_20290293_SNP [dm6]	G	A	1.233e^-4	0.844	INTERGENIC
2L	14129612	2L_14129612_SNP [dm3] 2L_14129612_SNP [dm6]	C	T	1.233e^-4	0.844	INTERGENIC
2L	5731871	2L_5731871_SNP [dm3] 2L_5731871_SNP [dm6]	A	G	1.238e^-4	0.844	INTRON CG11030	TF binding site mE1_TFBS_HSA
2L	13940105	2L_13940105_SNP [dm3] 2L_13940105_SNP [dm6]	T	A	1.241e^-4	0.844	INTRON Ance-3
3L	5912484	3L_5912484_SNP [dm3] 3L_5919384_SNP [dm6]	G	A	1.243e^-4	0.844	INTRON CG10483 & 1 other	TF binding site mE1_TFBS_cad
2L	4503838	2L_4503838_SNP [dm3] 2L_4503838_SNP [dm6]	A	G	1.245e^-4	0.844	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12249048	3L_12249048_SNP [dm3] 3L_12255948_SNP [dm6]	G	A	1.250e^-4	0.844	INTRON app	TF binding site mE1_TFBS_cad
2L	17887374	2L_17887374_SNP [dm3] 2L_17887374_SNP [dm6]	C	A	1.257e^-4	0.844	INTERGENIC
3R	16301316	3R_16301316_SNP [dm3] 3R_20475594_SNP [dm6]	A	C	1.264e^-4	0.844	INTRON Gfrl
3R	16301317	3R_16301317_SNP [dm3] 3R_20475595_SNP [dm6]	C	A	1.264e^-4	0.844	INTRON Gfrl
3R	16300689	3R_16300689_SNP [dm3] 3R_20474967_SNP [dm6]	G	A	1.270e^-4	0.844	INTRON Gfrl
3L	1262633	3L_1262633_SNP [dm3] 3L_1262633_SNP [dm6]	G	A	1.271e^-4	0.844	INTRON CG9134
2L	12993085	2L_12993085_SNP [dm3] 2L_12993085_SNP [dm6]	A	G	1.277e^-4	0.844	DOWNSTREAM CG12404 INTERGENIC
2L	13287704	2L_13287704_SNP [dm3] 2L_13287704_SNP [dm6]	G	A	1.282e^-4	0.844	SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
2R	18984307	2R_18984307_SNP [dm3] 2R_23096784_SNP [dm6]	C	A	1.290e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	23314122	3R_23314122_SNP [dm3] 3R_27488400_SNP [dm6]	A	G	1.293e^-4	0.844	SYNONYMOUS_CODING Gr98a
3R	7948292	3R_7948292_SNP [dm3] 3R_12122570_SNP [dm6]	G	C	1.298e^-4	0.844	INTRON CG4702	TF binding site mE1_TFBS_cad
2R	18942909	2R_18942909_SNP [dm3] 2R_23055386_SNP [dm6]	G	A	1.304e^-4	0.844	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1236466	3L_1236466_SNP [dm3] 3L_1236466_SNP [dm6]	A	G	1.307e^-4	0.844	DOWNSTREAM CR45747 & 1 other INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	906203	2L_906203_SNP [dm3] 2L_906203_SNP [dm6]	G	T	1.308e^-4	0.844	INTERGENIC
X	4862283	X_4862283_DEL [dm3] X_4968250_DEL [dm6]	AACA	A	1.311e^-4	0.844	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1384782	2L_1384782_SNP [dm3] 2L_1384782_SNP [dm6]	T	A	1.314e^-4	0.844	INTRON lea
2L	1384807	2L_1384807_DEL [dm3] 2L_1384807_DEL [dm6]	TTAGGCGATTG...	T	1.314e^-4	0.844	INTRON lea
2L	12987340	2L_12987340_SNP [dm3] 2L_12987340_SNP [dm6]	T	A	1.316e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6877839	3R_6877839_DEL [dm3] 3R_11052117_DEL [dm6]	CGAATTTT	A	1.317e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6877853	3R_6877853_DEL [dm3] 3R_11052131_DEL [dm6]	TTTCAAAA	C	1.317e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6877864	3R_6877864_MNP [dm3] 3R_11052142_MNP [dm6]	ATGC	TCTA	1.317e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6877873	3R_6877873_DEL [dm3] 3R_11052151_DEL [dm6]	AAA	A	1.317e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6877880	3R_6877880_DEL [dm3] 3R_11052158_DEL [dm6]	AATGC	A	1.317e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12076517	3L_12076517_SNP [dm3] 3L_12083417_SNP [dm6]	A	G	1.323e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5732130	2L_5732130_SNP [dm3] 2L_5732130_SNP [dm6]	C	T	1.323e^-4	0.844	INTRON CG11030	TF binding site mE1_TFBS_HSA
3L	13296239	3L_13296239_SNP [dm3] 3L_13303139_SNP [dm6]	C	T	1.328e^-4	0.844	UPSTREAM CR44555 DOWNSTREAM CR43911 EXON CR44557
X	16047859	X_16047859_DEL [dm3] X_16153826_DEL [dm6]	AGTTTT	A	1.332e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	15918154	3R_15918154_SNP [dm3] 3R_20092432_SNP [dm6]	C	G	1.338e^-4	0.844	INTERGENIC
3L	8183480	3L_8183480_INS [dm3] 3L_8190380_INS [dm6]	G	GACGGCG	1.339e^-4	0.844	UTR_3_PRIME Atg18a UPSTREAM MED24	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1619091	2L_1619091_SNP [dm3] 2L_1619091_SNP [dm6]	C	T	1.349e^-4	0.844	DOWNSTREAM CR44603 EXON CR44603
3L	19221238	3L_19221238_SNP [dm3] 3L_19228138_SNP [dm6]	C	G	1.349e^-4	0.844	UPSTREAM CR43893 INTRON fz2
2L	8044786	2L_8044786_SNP [dm3] 2L_8044786_SNP [dm6]	G	T	1.365e^-4	0.844	SPLICE_SITE_REGION CG7466 INTRON CG7466
3R	17319486	3R_17319486_SNP [dm3] 3R_21493764_SNP [dm6]	C	T	1.367e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19483956	3R_19483956_SNP [dm3] 3R_23658234_SNP [dm6]	G	A	1.373e^-4	0.844	INTRON CG31145
3R	16064369	3R_16064369_SNP [dm3] 3R_20238647_SNP [dm6]	T	A	1.374e^-4	0.844	INTRON Nlg4
2L	1173914	2L_1173914_SNP [dm3] 2L_1173914_SNP [dm6]	C	A	1.375e^-4	0.844	SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_cad
3R	6427607	3R_6427607_SNP [dm3] 3R_10601885_SNP [dm6]	G	A	1.381e^-4	0.844	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	842328	2L_842328_SNP [dm3] 2L_842328_SNP [dm6]	G	A	1.383e^-4	0.844	INTRON drongo
2L	11305847	2L_11305847_SNP [dm3] 2L_11305847_SNP [dm6]	C	A	1.386e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12995218	2L_12995218_SNP [dm3] 2L_12995218_SNP [dm6]	T	A	1.391e^-4	0.844	INTRON CG12404
2L	14130855	2L_14130855_SNP [dm3] 2L_14130855_SNP [dm6]	G	C	1.394e^-4	0.844	INTERGENIC
2L	1384795	2L_1384795_SNP [dm3] 2L_1384795_SNP [dm6]	A	G	1.394e^-4	0.844	INTRON lea
3R	15981768	3R_15981768_DEL [dm3] 3R_20156046_DEL [dm6]	TT	T	1.395e^-4	0.844	INTERGENIC
3R	16746449	3R_16746449_SNP [dm3] 3R_20920727_SNP [dm6]	T	C	1.395e^-4	0.844	INTRON CG31191 & 1 other
3R	16301311	3R_16301311_SNP [dm3] 3R_20475589_SNP [dm6]	G	A	1.405e^-4	0.844	INTRON Gfrl
3R	16301313	3R_16301313_SNP [dm3] 3R_20475591_SNP [dm6]	T	C	1.405e^-4	0.844	INTRON Gfrl
2L	4319309	2L_4319309_SNP [dm3] 2L_4319309_SNP [dm6]	C	A	1.410e^-4	0.844	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1236551	3L_1236551_SNP [dm3] 3L_1236551_SNP [dm6]	G	A	1.411e^-4	0.844	UTR_5_PRIME CG9194 DOWNSTREAM CR45747 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17358158	2R_17358158_SNP [dm3] 2R_21470653_SNP [dm6]	C	A	1.414e^-4	0.844	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	13566955	3R_13566955_INS [dm3] 3R_17741233_INS [dm6]	A	AA	1.416e^-4	0.844	INTRON TyrRII
X	13525862	X_13525862_SNP [dm3] X_13631829_SNP [dm6]	A	G	1.417e^-4	0.844	INTRON NFAT
2L	11057843	2L_11057843_SNP [dm3] 2L_11057843_SNP [dm6]	G	A	1.427e^-4	0.844	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11057846	2L_11057846_SNP [dm3] 2L_11057846_SNP [dm6]	T	C	1.436e^-4	0.844	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16301305	3R_16301305_INS [dm3] 3R_20475583_INS [dm6]	C	CA	1.439e^-4	0.844	INTRON Gfrl
3L	3897135	3L_3897135_SNP [dm3] 3L_3897135_SNP [dm6]	G	A	1.442e^-4	0.844	UPSTREAM Gr63a DOWNSTREAM Ccz1 INTRON CG14977	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16301480	3R_16301480_SNP [dm3] 3R_20475758_SNP [dm6]	G	A	1.448e^-4	0.844	INTRON Gfrl
2L	13868705	2L_13868705_SNP [dm3] 2L_13868705_SNP [dm6]	G	A	1.448e^-4	0.844	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1255359	3L_1255359_SNP [dm3] 3L_1255359_SNP [dm6]	G	A	1.449e^-4	0.844	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	16644883	3R_16644883_SNP [dm3] 3R_20819161_SNP [dm6]	C	T	1.453e^-4	0.844	UTR_3_PRIME CG17271 UPSTREAM CG17270 DOWNSTREAM CG17271
X	2335574	X_2335574_SNP [dm3] X_2441541_SNP [dm6]	G	A	1.457e^-4	0.844	DOWNSTREAM tko INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8730918	X_8730918_SNP [dm3] X_8836885_SNP [dm6]	G	C	1.466e^-4	0.844	DOWNSTREAM CR45537 INTERGENIC
2R	15291008	2R_15291008_SNP [dm3] 2R_19403503_SNP [dm6]	C	T	1.469e^-4	0.844	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad
2R	3281852	2R_3281852_SNP [dm3] 2R_7394347_SNP [dm6]	C	A	1.473e^-4	0.844	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
3L	15206957	3L_15206957_SNP [dm3] 3L_15213857_SNP [dm6]	C	A	1.475e^-4	0.844	INTERGENIC
3R	25266663	3R_25266663_SNP [dm3] 3R_29440941_SNP [dm6]	T	A	1.476e^-4	0.844	INTRON Ptp99A
3L	4202706	3L_4202706_SNP [dm3] 3L_4202706_SNP [dm6]	G	C	1.480e^-4	0.844	NON_SYNONYMOUS_CODING CG15005 INTRON CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17664843	3L_17664843_SNP [dm3] 3L_17671743_SNP [dm6]	A	C	1.483e^-4	0.844	UPSTREAM CG34251 INTRON CG34251
2L	12982596	2L_12982596_SNP [dm3] 2L_12982596_SNP [dm6]	G	C	1.491e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	606027	3L_606027_SNP [dm3] 3L_606027_SNP [dm6]	G	A	1.498e^-4	0.844	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
3R	25266572	3R_25266572_SNP [dm3] 3R_29440850_SNP [dm6]	T	C	1.508e^-4	0.844	INTRON Ptp99A
3L	11105934	3L_11105934_SNP [dm3] 3L_11112834_SNP [dm6]	G	A	1.509e^-4	0.844	SYNONYMOUS_CODING Sod DOWNSTREAM CG7638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25266671	3R_25266671_SNP [dm3] 3R_29440949_SNP [dm6]	A	T	1.515e^-4	0.844	INTRON Ptp99A
2R	19021118	2R_19021118_SNP [dm3] 2R_23133595_SNP [dm6]	G	A	1.530e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19961337	2R_19961337_SNP [dm3] 2R_24073814_SNP [dm6]	A	C	1.535e^-4	0.844	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
3R	16870042	3R_16870042_SNP [dm3] 3R_21044320_SNP [dm6]	C	G	1.536e^-4	0.844	SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
3L	918545	3L_918545_SNP [dm3] 3L_918545_SNP [dm6]	G	C	1.540e^-4	0.844	INTRON Glut1
3L	2298960	3L_2298960_SNP [dm3] 3L_2298960_SNP [dm6]	G	A	1.553e^-4	0.844	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9485228	3L_9485228_INS [dm3] 3L_9492128_INS [dm6]	T	TGT	1.559e^-4	0.844	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2280704	X_2280704_SNP [dm3] X_2386671_SNP [dm6]	C	T	1.562e^-4	0.844	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1236163	3L_1236163_SNP [dm3] 3L_1236163_SNP [dm6]	G	T	1.563e^-4	0.844	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_Trl
2L	937082	2L_937082_SNP [dm3] 2L_937082_SNP [dm6]	G	A	1.576e^-4	0.844	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23299220	3R_23299220_SNP [dm3] 3R_27473498_SNP [dm6]	T	C	1.587e^-4	0.844	INTERGENIC
3R	20428546	3R_20428546_SNP [dm3] 3R_24602824_SNP [dm6]	C	T	1.590e^-4	0.844	INTRON mld
3L	16535298	3L_16535298_SNP [dm3] 3L_16542198_SNP [dm6]	A	G	1.596e^-4	0.844	INTRON CG43373
2L	3313838	2L_3313838_SNP [dm3] 2L_3313838_SNP [dm6]	A	C	1.603e^-4	0.844	INTRON CG3277
3L	1243106	3L_1243106_SNP [dm3] 3L_1243106_SNP [dm6]	C	T	1.605e^-4	0.844	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
2L	1069270	2L_1069270_SNP [dm3] 2L_1069270_SNP [dm6]	G	A	1.606e^-4	0.844	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc
2L	1519271	2L_1519271_SNP [dm3] 2L_1519271_SNP [dm6]	G	A	1.610e^-4	0.844	DOWNSTREAM CG44072 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	17893718	2L_17893718_SNP [dm3] 2L_17893718_SNP [dm6]	G	A	1.610e^-4	0.844	UPSTREAM CR43420 INTERGENIC
2L	10678966	2L_10678966_SNP [dm3] 2L_10678966_SNP [dm6]	A	C	1.616e^-4	0.844	NON_SYNONYMOUS_CODING CG17104
2L	13287398	2L_13287398_SNP [dm3] 2L_13287398_SNP [dm6]	G	A	1.616e^-4	0.844	SYNONYMOUS_CODING Uvrag UPSTREAM Drep-4 DOWNSTREAM CR44083 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13287399	2L_13287399_SNP [dm3] 2L_13287399_SNP [dm6]	C	T	1.616e^-4	0.844	SYNONYMOUS_CODING Uvrag UPSTREAM Drep-4 DOWNSTREAM CR44083 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14135838	2L_14135838_SNP [dm3] 2L_14135838_SNP [dm6]	G	A	1.630e^-4	0.844	INTRON CG17341
X	14286375	X_14286375_SNP [dm3] X_14392342_SNP [dm6]	T	C	1.640e^-4	0.844	INTRON dpr8
3R	10229785	3R_10229785_INS [dm3] 3R_14404063_INS [dm6]	T	TT	1.641e^-4	0.844	INTRON cv-c
2L	20104912	2L_20104912_SNP [dm3] 2L_20104912_SNP [dm6]	T	G	1.641e^-4	0.844	UPSTREAM CG13970 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4498768	2L_4498768_SNP [dm3] 2L_4498768_SNP [dm6]	C	A	1.645e^-4	0.844	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25266664	3R_25266664_SNP [dm3] 3R_29440942_SNP [dm6]	A	G	1.654e^-4	0.844	INTRON Ptp99A
3L	16822317	3L_16822317_SNP [dm3] 3L_16829217_SNP [dm6]	C	A	1.656e^-4	0.844	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13287773	2L_13287773_SNP [dm3] 2L_13287773_SNP [dm6]	A	G	1.663e^-4	0.844	SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
3R	19657251	3R_19657251_SNP [dm3] 3R_23831529_SNP [dm6]	C	G	1.671e^-4	0.844	INTRON CG34355
3R	22380952	3R_22380952_SNP [dm3] 3R_26555230_SNP [dm6]	T	C	1.678e^-4	0.844	SPLICE_SITE_REGION scrib INTRON scrib
3L	1814598	3L_1814598_DEL [dm3] 3L_1814598_DEL [dm6]	ATATGAAGTTA...	A	1.680e^-4	0.844	INTRON GV1
2L	2250387	2L_2250387_SNP [dm3] 2L_2250387_SNP [dm6]	A	G	1.681e^-4	0.844	DOWNSTREAM Ser12 INTERGENIC
2L	17886276	2L_17886276_SNP [dm3] 2L_17886276_SNP [dm6]	G	A	1.689e^-4	0.844	INTERGENIC
3L	9788410	3L_9788410_SNP [dm3] 3L_9795310_SNP [dm6]	G	A	1.699e^-4	0.844	INTRON Zasp67
X	17274125	X_17274125_SNP [dm3] X_17380092_SNP [dm6]	A	C	1.702e^-4	0.844	INTERGENIC
2R	17452409	2R_17452409_SNP [dm3] 2R_21564904_SNP [dm6]	C	A	1.712e^-4	0.844	INTRON CG10440
3L	16536841	3L_16536841_SNP [dm3] 3L_16543741_SNP [dm6]	C	T	1.712e^-4	0.844	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
X	17173380	X_17173380_SNP [dm3] X_17279347_SNP [dm6]	A	T	1.715e^-4	0.844	INTRON f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25266672	3R_25266672_SNP [dm3] 3R_29440950_SNP [dm6]	T	G	1.716e^-4	0.844	INTRON Ptp99A
3L	3639596	3L_3639596_SNP [dm3] 3L_3639596_SNP [dm6]	A	G	1.724e^-4	0.844	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2063825	X_2063825_SNP [dm3] X_2169792_SNP [dm6]	T	A	1.733e^-4	0.844	INTRON CG3630
2R	19021160	2R_19021160_SNP [dm3] 2R_23133637_SNP [dm6]	A	T	1.736e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2653921	2L_2653921_SNP [dm3] 2L_2653921_SNP [dm6]	C	T	1.747e^-4	0.844	UTR_3_PRIME Prosbeta4R1 UPSTREAM Or23a
3R	14015531	3R_14015531_SNP [dm3] 3R_18189809_SNP [dm6]	T	C	1.749e^-4	0.844	SYNONYMOUS_CODING MED17	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3673392	2L_3673392_SNP [dm3] 2L_3673392_SNP [dm6]	T	A	1.749e^-4	0.844	INTRON CG34340
3L	3720830	3L_3720830_SNP [dm3] 3L_3720830_SNP [dm6]	T	C	1.755e^-4	0.844	INTRON CG32264
2L	17891827	2L_17891827_SNP [dm3] 2L_17891827_SNP [dm6]	G	A	1.757e^-4	0.844	INTERGENIC
2L	4503817	2L_4503817_SNP [dm3] 2L_4503817_SNP [dm6]	T	C	1.758e^-4	0.844	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8885658	3L_8885658_SNP [dm3] 3L_8892558_SNP [dm6]	C	T	1.763e^-4	0.844	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3R	7426802	3R_7426802_SNP [dm3] 3R_11601080_SNP [dm6]	A	G	1.771e^-4	0.844	INTRON Jupiter
3R	17319478	3R_17319478_SNP [dm3] 3R_21493756_SNP [dm6]	A	T	1.778e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1243650	3L_1243650_SNP [dm3] 3L_1243650_SNP [dm6]	T	A	1.791e^-4	0.844	INTRON Klp61F
3L	1239798	3L_1239798_SNP [dm3] 3L_1239798_SNP [dm6]	C	T	1.792e^-4	0.844	INTRON CG9194	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1264632	3L_1264632_SNP [dm3] 3L_1264632_SNP [dm6]	T	A	1.795e^-4	0.844	INTRON CG9134
2R	8722219	2R_8722219_SNP [dm3] 2R_12834714_SNP [dm6]	C	A	1.797e^-4	0.844	INTERGENIC
3L	12325640	3L_12325640_SNP [dm3] 3L_12332540_SNP [dm6]	G	C	1.800e^-4	0.844	INTRON CG32105
2R	17249132	2R_17249132_SNP [dm3] 2R_21361627_SNP [dm6]	G	C	1.805e^-4	0.844	INTRON cv-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8051184	2L_8051184_SNP [dm3] 2L_8051184_SNP [dm6]	G	A	1.814e^-4	0.844	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16294108	2L_16294108_SNP [dm3] 2L_16294108_SNP [dm6]	T	A	1.814e^-4	0.844	UPSTREAM Cyp303a1 & 1 other INTERGENIC
2L	4499360	2L_4499360_SNP [dm3] 2L_4499360_SNP [dm6]	T	C	1.819e^-4	0.844	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9733478	3L_9733478_SNP [dm3] 3L_9740378_SNP [dm6]	T	C	1.819e^-4	0.844	UPSTREAM CG42268 INTRON CG42268
3R	14585337	3R_14585337_SNP [dm3] 3R_18759615_SNP [dm6]	G	A	1.824e^-4	0.844	SYNONYMOUS_CODING CG7720 UPSTREAM CG14299
2R	15288792	2R_15288792_SNP [dm3] 2R_19401287_SNP [dm6]	T	G	1.825e^-4	0.844	NON_SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
2L	17249008	2L_17249008_SNP [dm3] 2L_17249008_SNP [dm6]	T	C	1.844e^-4	0.844	INTRON beat-IIIc
2R	9827900	2R_9827900_SNP [dm3] 2R_13940395_SNP [dm6]	A	G	1.849e^-4	0.844	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12995100	2L_12995100_SNP [dm3] 2L_12995100_SNP [dm6]	A	C	1.856e^-4	0.844	INTRON CG12404
3L	1247486	3L_1247486_SNP [dm3] 3L_1247486_SNP [dm6]	C	G	1.858e^-4	0.844	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1248854	3L_1248854_SNP [dm3] 3L_1248854_SNP [dm6]	C	T	1.858e^-4	0.844	SYNONYMOUS_CODING Sac1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	1248899	3L_1248899_SNP [dm3] 3L_1248899_SNP [dm6]	G	A	1.858e^-4	0.844	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1255946	3L_1255946_SNP [dm3] 3L_1255946_SNP [dm6]	A	C	1.858e^-4	0.844	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
X	17245911	X_17245911_SNP [dm3] X_17351878_SNP [dm6]	G	A	1.858e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	16536778	3L_16536778_SNP [dm3] 3L_16543678_SNP [dm6]	C	T	1.859e^-4	0.844	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
3L	16859277	3L_16859277_SNP [dm3] 3L_16866177_SNP [dm6]	C	T	1.861e^-4	0.844	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10694424	2L_10694424_SNP [dm3] 2L_10694424_SNP [dm6]	A	T	1.862e^-4	0.844	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10227428	2L_10227428_SNP [dm3] 2L_10227428_SNP [dm6]	G	A	1.863e^-4	0.844	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	17274124	X_17274124_SNP [dm3] X_17380091_SNP [dm6]	T	A	1.863e^-4	0.844	INTERGENIC
3R	22380935	3R_22380935_SNP [dm3] 3R_26555213_SNP [dm6]	T	C	1.869e^-4	0.844	INTRON scrib
3R	23938457	3R_23938457_INS [dm3] 3R_28112735_INS [dm6]	A	CAACC	1.882e^-4	0.844	INTERGENIC
2R	16866840	2R_16866840_SNP [dm3] 2R_20979335_SNP [dm6]	A	T	1.883e^-4	0.844	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650
3L	7751575	3L_7751575_SNP [dm3] 3L_7758475_SNP [dm6]	A	C	1.886e^-4	0.844	NON_SYNONYMOUS_CODING CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6878020	3R_6878020_SNP [dm3] 3R_11052298_SNP [dm6]	G	A	1.894e^-4	0.844	INTERGENIC
3L	15284882	3L_15284882_SNP [dm3] 3L_15291782_SNP [dm6]	C	G	1.899e^-4	0.844	INTERGENIC
2R	18503859	2R_18503859_SNP [dm3] 2R_22616354_SNP [dm6]	T	C	1.900e^-4	0.844	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10053726	X_10053726_SNP [dm3] X_10159693_SNP [dm6]	T	C	1.908e^-4	0.844	INTRON CR44894 & 1 other
3R	9528943	3R_9528943_SNP [dm3] 3R_13703221_SNP [dm6]	G	A	1.913e^-4	0.844	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
2R	15731338	2R_15731338_SNP [dm3] 2R_19843833_SNP [dm6]	G	A	1.914e^-4	0.844	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	14015552	3R_14015552_SNP [dm3] 3R_18189830_SNP [dm6]	A	T	1.919e^-4	0.844	SYNONYMOUS_CODING MED17	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4678505	2L_4678505_SNP [dm3] 2L_4678505_SNP [dm6]	C	T	1.932e^-4	0.844	INTERGENIC
3R	5637646	3R_5637646_SNP [dm3] 3R_9811924_SNP [dm6]	G	A	1.935e^-4	0.844	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4947774	3L_4947774_SNP [dm3] 3L_4947774_SNP [dm6]	T	G	1.950e^-4	0.844	INTRON Con
3L	1274210	3L_1274210_SNP [dm3] 3L_1274210_SNP [dm6]	A	T	1.954e^-4	0.844	UTR_3_PRIME CG9134	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
X	3879600	X_3879600_DEL [dm3] X_3985567_DEL [dm6]	CT	C	1.957e^-4	0.844	INTERGENIC
3L	1255360	3L_1255360_SNP [dm3] 3L_1255360_SNP [dm6]	G	A	1.990e^-4	0.844	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3L	1268678	3L_1268678_SNP [dm3] 3L_1268678_SNP [dm6]	A	C	2.006e^-4	0.844	INTRON CG9134
3L	5124797	3L_5124797_SNP [dm3] 3L_5131697_SNP [dm6]	T	A	2.009e^-4	0.844	INTRON CG15212
3L	906419	3L_906419_SNP [dm3] 3L_906419_SNP [dm6]	T	A	2.010e^-4	0.844	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15731401	2R_15731401_INS [dm3] 2R_19843896_INS [dm6]	C	CC	2.011e^-4	0.844	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2654034	2L_2654034_SNP [dm3] 2L_2654034_SNP [dm6]	G	A	2.016e^-4	0.844	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2R	12772210	2R_12772210_DEL [dm3] 2R_16884705_DEL [dm6]	TTGAAACGT	T	2.020e^-4	0.844	DOWNSTREAM CG6472 INTRON CG8910
3L	6964579	3L_6964579_SNP [dm3] 3L_6971479_SNP [dm6]	C	T	2.032e^-4	0.844	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063
3R	18374209	3R_18374209_SNP [dm3] 3R_22548487_SNP [dm6]	T	C	2.033e^-4	0.844	UPSTREAM AdipoR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12988334	2L_12988334_SNP [dm3] 2L_12988334_SNP [dm6]	T	A	2.033e^-4	0.844	INTERGENIC
2L	12981761	2L_12981761_DEL [dm3] 2L_12981761_DEL [dm6]	CGC	C	2.047e^-4	0.844	DOWNSTREAM Vha68-3 INTERGENIC
3R	22900005	3R_22900005_SNP [dm3] 3R_27074283_SNP [dm6]	A	T	2.050e^-4	0.844	INTERGENIC
X	20911231	X_20911231_SNP [dm3] X_21040204_SNP [dm6]	C	T	2.057e^-4	0.844	UTR_3_PRIME Ntf-2 DOWNSTREAM Ntf-2 INTRON CG15449
3L	17223255	3L_17223255_SNP [dm3] 3L_17230155_SNP [dm6]	C	T	2.057e^-4	0.844	INTRON Rbp6
3R	23774365	3R_23774365_SNP [dm3] 3R_27948643_SNP [dm6]	C	T	2.068e^-4	0.844	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	6888657	3R_6888657_SNP [dm3] 3R_11062935_SNP [dm6]	G	C	2.068e^-4	0.844	INTERGENIC
2R	15731403	2R_15731403_SNP [dm3] 2R_19843898_SNP [dm6]	T	A	2.070e^-4	0.844	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	6427587	3R_6427587_SNP [dm3] 3R_10601865_SNP [dm6]	G	A	2.071e^-4	0.844	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5885188	3L_5885188_SNP [dm3] 3L_5892088_SNP [dm6]	C	T	2.073e^-4	0.844	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9574553	3L_9574553_SNP [dm3] 3L_9581453_SNP [dm6]	C	G	2.074e^-4	0.844	SYNONYMOUS_CODING CG42673
X	19374155	X_19374155_SNP [dm3] X_19480122_SNP [dm6]	T	C	2.085e^-4	0.844	UTR_5_PRIME mRpS14 & 1 other UPSTREAM Nat1 & 2 others	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	3720703	3L_3720703_INS [dm3] 3L_3720703_INS [dm6]	C	CAGTC	2.086e^-4	0.844	INTRON CG32264
3L	9574451	3L_9574451_SNP [dm3] 3L_9581351_SNP [dm6]	T	A	2.086e^-4	0.844	INTRON CG42673
3L	10939152	3L_10939152_SNP [dm3] 3L_10946052_SNP [dm6]	A	G	2.088e^-4	0.844	DOWNSTREAM CG34050 INTERGENIC
2L	13940119	2L_13940119_SNP [dm3] 2L_13940119_SNP [dm6]	A	G	2.088e^-4	0.844	INTRON Ance-3
2L	20128080	2L_20128080_SNP [dm3] 2L_20128080_SNP [dm6]	C	T	2.089e^-4	0.844	INTERGENIC
2L	17608395	2L_17608395_SNP [dm3] 2L_17608395_SNP [dm6]	G	T	2.089e^-4	0.844	INTERGENIC
3L	20077273	3L_20077273_SNP [dm3] 3L_20084173_SNP [dm6]	G	C	2.092e^-4	0.844	INTRON sNPF-R
2L	17888175	2L_17888175_SNP [dm3] 2L_17888175_SNP [dm6]	C	G	2.094e^-4	0.844	INTERGENIC
X	14873788	X_14873788_SNP [dm3] X_14979755_SNP [dm6]	C	A	2.094e^-4	0.844	INTRON eag
3R	27083156	3R_27083156_SNP [dm3] 3R_31257434_SNP [dm6]	A	C	2.095e^-4	0.844	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
2L	1069690	2L_1069690_SNP [dm3] 2L_1069690_SNP [dm6]	A	C	2.096e^-4	0.844	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9599978	3L_9599978_SNP [dm3] 3L_9606878_SNP [dm6]	C	A	2.102e^-4	0.844	INTRON CG3280
3R	23913997	3R_23913997_SNP [dm3] 3R_28088275_SNP [dm6]	A	G	2.109e^-4	0.844	UTR_3_PRIME CG34362
2L	17896245	2L_17896245_SNP [dm3] 2L_17896245_SNP [dm6]	C	T	2.109e^-4	0.844	INTERGENIC
3L	1268683	3L_1268683_SNP [dm3] 3L_1268683_SNP [dm6]	T	A	2.111e^-4	0.844	INTRON CG9134
2R	11299547	2R_11299547_SNP [dm3] 2R_15412042_SNP [dm6]	G	A	2.111e^-4	0.844	INTRON CG43729
X	13189529	X_13189529_SNP [dm3] X_13295496_SNP [dm6]	A	G	2.114e^-4	0.844	INTRON CG1764
3R	23340472	3R_23340472_SNP [dm3] 3R_27514750_SNP [dm6]	T	C	2.131e^-4	0.844	INTERGENIC
3R	5304781	3R_5304781_DEL [dm3] 3R_9479059_DEL [dm6]	GTCGGTGGG	G	2.131e^-4	0.844	INTRON CG16779
X	15401405	X_15401405_SNP [dm3] X_15507372_SNP [dm6]	A	C	2.136e^-4	0.844	UPSTREAM mir-283 INTRON Gmap	TF binding site mE1_TFBS_HSA
X	15427220	X_15427220_SNP [dm3] X_15533187_SNP [dm6]	A	G	2.146e^-4	0.844	INTRON Ac13E
2R	15292463	2R_15292463_SNP [dm3] 2R_19404958_SNP [dm6]	G	A	2.148e^-4	0.844	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12317586	3R_12317586_SNP [dm3] 3R_16491864_SNP [dm6]	C	T	2.148e^-4	0.844	SPLICE_SITE_REGION Cad89D INTRON Cad89D
3R	13705606	3R_13705606_SNP [dm3] 3R_17879884_SNP [dm6]	C	T	2.150e^-4	0.844	INTRON Rim
2R	5087690	2R_5087690_SNP [dm3] 2R_9200185_SNP [dm6]	A	G	2.158e^-4	0.844	DOWNSTREAM unpg INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13513105	3R_13513105_SNP [dm3] 3R_17687383_SNP [dm6]	A	T	2.162e^-4	0.844	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
2R	5698631	2R_5698631_SNP [dm3] 2R_9811126_SNP [dm6]	A	T	2.168e^-4	0.844	UTR_3_PRIME CG1648 DOWNSTREAM CG1648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6579619	3L_6579619_SNP [dm3] 3L_6586519_SNP [dm6]	A	G	2.178e^-4	0.844	INTRON CG18769 & 1 other
X	14786545	X_14786545_SNP [dm3] X_14892512_SNP [dm6]	T	A	2.181e^-4	0.844	INTRON Flo2 & 1 other
2L	15784741	2L_15784741_SNP [dm3] 2L_15784741_SNP [dm6]	A	C	2.184e^-4	0.844	NON_SYNONYMOUS_CODING CG18109
2L	18628442	2L_18628442_SNP [dm3] 2L_18628442_SNP [dm6]	A	G	2.190e^-4	0.844	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2R	16921094	2R_16921094_SNP [dm3] 2R_21033589_SNP [dm6]	T	C	2.198e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1386785	2L_1386785_SNP [dm3] 2L_1386785_SNP [dm6]	G	A	2.200e^-4	0.844	INTRON lea
3R	6877889	3R_6877889_DEL [dm3] 3R_11052167_DEL [dm6]	ACCCT	A	2.203e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9788347	3L_9788347_SNP [dm3] 3L_9795247_SNP [dm6]	T	C	2.205e^-4	0.844	INTRON Zasp67
3R	16233497	3R_16233497_SNP [dm3] 3R_20407775_SNP [dm6]	C	T	2.206e^-4	0.844	NON_SYNONYMOUS_CODING CG4335 UPSTREAM CG10881 INTRON Gfrl
2L	3674228	2L_3674228_SNP [dm3] 2L_3674228_SNP [dm6]	C	A	2.207e^-4	0.844	INTRON CG34340
2R	16304585	2R_16304585_SNP [dm3] 2R_20417080_SNP [dm6]	G	T	2.214e^-4	0.844	INTERGENIC
3R	16013088	3R_16013088_SNP [dm3] 3R_20187366_SNP [dm6]	A	C	2.234e^-4	0.844	INTERGENIC
2L	1384803	2L_1384803_SNP [dm3] 2L_1384803_SNP [dm6]	T	A	2.244e^-4	0.844	INTRON lea
3L	1254210	3L_1254210_SNP [dm3] 3L_1254210_SNP [dm6]	A	G	2.248e^-4	0.844	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo
2L	7025693	2L_7025693_SNP [dm3] 2L_7025693_SNP [dm6]	C	G	2.254e^-4	0.844	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	2078038	2R_2078038_SNP [dm3] 2R_6190533_SNP [dm6]	A	G	2.259e^-4	0.844	UPSTREAM tRNA:N5:42Ae DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	23938466	3R_23938466_INS [dm3] 3R_28112744_INS [dm6]	G	TTTGC	2.259e^-4	0.844	INTERGENIC
2R	15292277	2R_15292277_SNP [dm3] 2R_19404772_SNP [dm6]	C	G	2.259e^-4	0.844	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8294964	X_8294964_INS [dm3] X_8400931_INS [dm6]	A	AA	2.260e^-4	0.844	INTRON CG10555	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1278516	3L_1278516_SNP [dm3] 3L_1278516_SNP [dm6]	C	G	2.264e^-4	0.844	INTRON CG32333
X	8435023	X_8435023_SNP [dm3] X_8540990_SNP [dm6]	C	T	2.266e^-4	0.844	INTRON Nrg
2R	14827489	2R_14827489_SNP [dm3] 2R_18939984_SNP [dm6]	T	G	2.267e^-4	0.844	INTRON sano
2L	3673357	2L_3673357_SNP [dm3] 2L_3673357_SNP [dm6]	G	T	2.272e^-4	0.844	INTRON CG34340
X	2062909	X_2062909_SNP [dm3] X_2168876_SNP [dm6]	T	C	2.274e^-4	0.844	INTRON CG3630
3L	15756020	3L_15756020_SNP [dm3] 3L_15762920_SNP [dm6]	G	A	2.278e^-4	0.844	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9038293	2L_9038293_DEL [dm3] 2L_9038293_DEL [dm6]	TTCTCATTGGCTCGAA...	T	2.280e^-4	0.844	INTERGENIC
3L	9263635	3L_9263635_SNP [dm3] 3L_9270535_SNP [dm6]	G	T	2.281e^-4	0.844	INTRON GluRIB
3L	3982769	3L_3982769_SNP [dm3] 3L_3982769_SNP [dm6]	C	T	2.282e^-4	0.844	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8345635	3R_8345635_SNP [dm3] 3R_12519913_SNP [dm6]	T	G	2.284e^-4	0.844	INTRON Octbeta3R
2L	11018866	2L_11018866_SNP [dm3] 2L_11018866_SNP [dm6]	T	C	2.285e^-4	0.844	DOWNSTREAM CG14913 INTRON Samuel
2L	3673401	2L_3673401_SNP [dm3] 2L_3673401_SNP [dm6]	A	G	2.287e^-4	0.844	INTRON CG34340
3R	21063794	3R_21063794_SNP [dm3] 3R_25238072_SNP [dm6]	C	T	2.288e^-4	0.844	SPLICE_SITE_REGION CG11852 SYNONYMOUS_CODING CG11852
2L	3674447	2L_3674447_SNP [dm3] 2L_3674447_SNP [dm6]	G	T	2.292e^-4	0.844	INTRON CG34340
X	10087181	X_10087181_SNP [dm3] X_10193148_SNP [dm6]	T	C	2.292e^-4	0.844	UTR_3_PRIME CG43902 INTRON CR44894
X	13194093	X_13194093_SNP [dm3] X_13300060_SNP [dm6]	A	G	2.294e^-4	0.844	DOWNSTREAM CG1622 INTRON CG1764
2L	3673376	2L_3673376_SNP [dm3] 2L_3673376_SNP [dm6]	G	T	2.301e^-4	0.844	INTRON CG34340
2L	5732069	2L_5732069_SNP [dm3] 2L_5732069_SNP [dm6]	T	A	2.307e^-4	0.844	INTRON CG11030	TF binding site mE1_TFBS_HSA
3R	10590320	3R_10590320_SNP [dm3] 3R_14764598_SNP [dm6]	G	T	2.311e^-4	0.844	INTRON jvl
3L	20077283	3L_20077283_SNP [dm3] 3L_20084183_SNP [dm6]	G	C	2.312e^-4	0.844	INTRON sNPF-R
X	1943433	X_1943433_SNP [dm3] X_2049400_SNP [dm6]	G	T	2.314e^-4	0.844	UTR_5_PRIME moody INTRON CG4313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23340497	3R_23340497_SNP [dm3] 3R_27514775_SNP [dm6]	C	T	2.315e^-4	0.844	INTERGENIC
3L	4985535	3L_4985535_SNP [dm3] 3L_4985535_SNP [dm6]	T	A	2.315e^-4	0.844	INTRON Con
2L	20082632	2L_20082632_INS [dm3] 2L_20082632_INS [dm6]	T	TT	2.349e^-4	0.85	UTR_3_PRIME fok INTRON neb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	20634435	3R_20634435_SNP [dm3] 3R_24808713_SNP [dm6]	T	C	2.352e^-4	0.85	DOWNSTREAM CG6980 INTRON CG5807
3L	13762164	3L_13762164_SNP [dm3] 3L_13769064_SNP [dm6]	C	A	2.353e^-4	0.85	INTRON bru-3
X	17173816	X_17173816_SNP [dm3] X_17279783_SNP [dm6]	T	C	2.358e^-4	0.85	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_chinmo
X	5701785	X_5701785_SNP [dm3] X_5807752_SNP [dm6]	A	T	2.365e^-4	0.85	INTERGENIC
X	5701810	X_5701810_SNP [dm3] X_5807777_SNP [dm6]	C	T	2.365e^-4	0.85	INTERGENIC
2R	16492596	2R_16492596_SNP [dm3] 2R_20605091_SNP [dm6]	G	A	2.367e^-4	0.85	SYNONYMOUS_CODING bl UPSTREAM mir-7	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5285694	3R_5285694_SNP [dm3] 3R_9459972_SNP [dm6]	T	A	2.368e^-4	0.85	UPSTREAM GstZ2 INTRON GstZ2	regulatory region REDfly_CRMs
3R	25607258	3R_25607258_SNP [dm3] 3R_29781536_SNP [dm6]	T	A	2.377e^-4	0.85	INTRON kay
2L	18254189	2L_18254189_SNP [dm3] 2L_18254189_SNP [dm6]	T	C	2.381e^-4	0.85	INTRON CG42750
3L	3982745	3L_3982745_SNP [dm3] 3L_3982745_SNP [dm6]	G	C	2.381e^-4	0.85	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3616990	3L_3616990_SNP [dm3] 3L_3616990_SNP [dm6]	A	T	2.407e^-4	0.851	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	3814385	X_3814385_SNP [dm3] X_3920352_SNP [dm6]	G	C	2.410e^-4	0.851	INTRON CG42541
X	17178420	X_17178420_SNP [dm3] X_17284387_SNP [dm6]	G	A	2.412e^-4	0.851	INTRON CG5445 & 1 other
2R	17141641	2R_17141641_SNP [dm3] 2R_21254136_SNP [dm6]	C	T	2.414e^-4	0.851	INTERGENIC
3L	10886697	3L_10886697_DEL [dm3] 3L_10893597_DEL [dm6]	TCCTTTTAAAATTAAATGTT...	T	2.420e^-4	0.851	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
3R	16521434	3R_16521434_SNP [dm3] 3R_20695712_SNP [dm6]	G	A	2.421e^-4	0.851	INTRON Oamb
3L	3598903	3L_3598903_SNP [dm3] 3L_3598903_SNP [dm6]	A	T	2.426e^-4	0.851	INTRON Eip63E
3L	12279452	3L_12279452_SNP [dm3] 3L_12286352_SNP [dm6]	G	C	2.427e^-4	0.851	INTERGENIC
3L	6293650	3L_6293650_SNP [dm3] 3L_6300550_SNP [dm6]	A	C	2.430e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16383857	2L_16383857_DEL [dm3] 2L_16383857_DEL [dm6]	CAA	T	2.433e^-4	0.851	INTERGENIC
2L	16294497	2L_16294497_SNP [dm3] 2L_16294497_SNP [dm6]	C	T	2.435e^-4	0.851	SYNONYMOUS_CODING Cyp303a1 UPSTREAM CR44899	TF binding site mE1_TFBS_sens
2L	13013014	2L_13013014_SNP [dm3] 2L_13013014_SNP [dm6]	T	C	2.444e^-4	0.851	UTR_3_PRIME Tor DOWNSTREAM CG9934	TF binding site mE1_TFBS_cad
3L	9561544	3L_9561544_SNP [dm3] 3L_9568444_SNP [dm6]	A	T	2.446e^-4	0.851	INTRON CG42673
3L	768052	3L_768052_SNP [dm3] 3L_768052_SNP [dm6]	G	A	2.464e^-4	0.851	INTERGENIC
3L	8205343	3L_8205343_SNP [dm3] 3L_8212243_SNP [dm6]	A	G	2.465e^-4	0.851	SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
3L	3982785	3L_3982785_SNP [dm3] 3L_3982785_SNP [dm6]	C	A	2.466e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	812555	2L_812555_SNP [dm3] 2L_812555_SNP [dm6]	T	G	2.472e^-4	0.851	DOWNSTREAM Saf6 INTRON Dbp21E2	TF binding site mE1_TFBS_sens
2L	17884636	2L_17884636_SNP [dm3] 2L_17884636_SNP [dm6]	T	A	2.479e^-4	0.851	INTERGENIC
2R	14632146	2R_14632146_SNP [dm3] 2R_18744641_SNP [dm6]	G	T	2.481e^-4	0.851	INTRON Hs3st-A & 1 other
2L	908958	2L_908958_SNP [dm3] 2L_908958_SNP [dm6]	T	G	2.484e^-4	0.851	INTERGENIC
2L	17884397	2L_17884397_SNP [dm3] 2L_17884397_SNP [dm6]	G	A	2.488e^-4	0.851	INTERGENIC
3L	9788348	3L_9788348_SNP [dm3] 3L_9795248_SNP [dm6]	G	A	2.494e^-4	0.851	INTRON Zasp67
3L	9788372	3L_9788372_SNP [dm3] 3L_9795272_SNP [dm6]	G	A	2.494e^-4	0.851	INTRON Zasp67
2R	15909681	2R_15909681_SNP [dm3] 2R_20022176_SNP [dm6]	G	C	2.495e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7486346	2L_7486346_DEL [dm3] 2L_7486346_DEL [dm6]	TGT	T	2.498e^-4	0.851	INTRON Ziz
2L	13196199	2L_13196199_SNP [dm3] 2L_13196199_SNP [dm6]	G	C	2.507e^-4	0.852	SYNONYMOUS_CODING Edem2 DOWNSTREAM CG16972
3R	17272942	3R_17272942_SNP [dm3] 3R_21447220_SNP [dm6]	G	A	2.513e^-4	0.852	UPSTREAM lbe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17167769	3L_17167769_SNP [dm3] 3L_17174669_SNP [dm6]	C	G	2.514e^-4	0.852	INTRON Rbp6
2L	9489982	2L_9489982_SNP [dm3] 2L_9489982_SNP [dm6]	C	A	2.517e^-4	0.852	INTERGENIC
3L	9788433	3L_9788433_SNP [dm3] 3L_9795333_SNP [dm6]	C	T	2.524e^-4	0.853	INTRON Zasp67
3L	8041494	3L_8041494_SNP [dm3] 3L_8048394_SNP [dm6]	T	A	2.540e^-4	0.855	UTR_3_PRIME nmo INTRON nmo
X	11199058	X_11199058_SNP [dm3] X_11305025_SNP [dm6]	T	C	2.543e^-4	0.855	INTERGENIC
2L	14455923	2L_14455923_SNP [dm3] 2L_14455923_SNP [dm6]	G	A	2.546e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
3R	23313955	3R_23313955_SNP [dm3] 3R_27488233_SNP [dm6]	G	A	2.551e^-4	0.855	NON_SYNONYMOUS_CODING Gr98a
2L	9093103	2L_9093103_SNP [dm3] 2L_9093103_SNP [dm6]	T	C	2.555e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	17458720	2R_17458720_SNP [dm3] 2R_21571215_SNP [dm6]	T	C	2.565e^-4	0.855	UTR_5_PRIME CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15401550	X_15401550_SNP [dm3] X_15507517_SNP [dm6]	A	G	2.566e^-4	0.855	SYNONYMOUS_CODING Gmap UPSTREAM mir-283
3R	9937934	3R_9937934_SNP [dm3] 3R_14112212_SNP [dm6]	T	A	2.576e^-4	0.855	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
3R	11742114	3R_11742114_SNP [dm3] 3R_15916392_SNP [dm6]	A	G	2.576e^-4	0.855	INTRON CG45105	TF binding site mE1_TFBS_sens
3L	16460541	3L_16460541_SNP [dm3] 3L_16467441_SNP [dm6]	T	A	2.577e^-4	0.855	INTRON CG33158
X	21383683	X_21383683_SNP [dm3] X_21512656_SNP [dm6]	G	A	2.585e^-4	0.855	INTRON CR45082
3R	19776740	3R_19776740_SNP [dm3] 3R_23951018_SNP [dm6]	A	T	2.607e^-4	0.855	INTERGENIC
2R	15282821	2R_15282821_SNP [dm3] 2R_19395316_SNP [dm6]	G	A	2.611e^-4	0.855	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	20843273	3R_20843273_SNP [dm3] 3R_25017551_SNP [dm6]	G	T	2.627e^-4	0.855	SYNONYMOUS_CODING tnc
3R	26302060	3R_26302060_DEL [dm3] 3R_30476338_DEL [dm6]	AC	A	2.639e^-4	0.855	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14649200	3L_14649200_SNP [dm3] 3L_14656100_SNP [dm6]	T	G	2.643e^-4	0.855	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13767108	2R_13767108_SNP [dm3] 2R_17879603_SNP [dm6]	C	T	2.651e^-4	0.855	SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk
3L	4123942	3L_4123942_SNP [dm3] 3L_4123942_SNP [dm6]	T	C	2.651e^-4	0.855	UTR_3_PRIME ens
2R	5654951	2R_5654951_SNP [dm3] 2R_9767446_SNP [dm6]	T	C	2.655e^-4	0.855	INTRON CG1688 EXON CR44205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	4772111	2R_4772111_SNP [dm3] 2R_8884606_SNP [dm6]	G	T	2.657e^-4	0.855	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1248908	3L_1248908_SNP [dm3] 3L_1248908_SNP [dm6]	C	T	2.662e^-4	0.855	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	4535315	X_4535315_SNP [dm3] X_4641282_SNP [dm6]	T	A	2.667e^-4	0.855	UTR_3_PRIME CG3062 UPSTREAM CG3081 INTRON CG3081	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13398569	2R_13398569_DEL [dm3] 2R_17511064_DEL [dm6]	AA	A	2.677e^-4	0.855	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
2L	17167828	2L_17167828_SNP [dm3] 2L_17167828_SNP [dm6]	C	T	2.686e^-4	0.855	INTRON beat-IIIa & 1 other
2R	17029273	2R_17029273_SNP [dm3] 2R_21141768_SNP [dm6]	T	A	2.694e^-4	0.855	START_GAINED Magi UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	9788434	3L_9788434_SNP [dm3] 3L_9795334_SNP [dm6]	C	T	2.705e^-4	0.855	INTRON Zasp67
X	4951666	X_4951666_SNP [dm3] X_5057633_SNP [dm6]	T	A	2.707e^-4	0.855	INTRON CR44833 & 1 other
3R	17676145	3R_17676145_SNP [dm3] 3R_21850423_SNP [dm6]	T	C	2.709e^-4	0.855	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19898473	3R_19898473_SNP [dm3] 3R_24072751_SNP [dm6]	G	A	2.713e^-4	0.855	INTRON 4EHP
3L	15288818	3L_15288818_SNP [dm3] 3L_15295718_SNP [dm6]	T	C	2.714e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17389214	X_17389214_SNP [dm3] X_17495181_SNP [dm6]	G	A	2.718e^-4	0.855	INTRON CG43658
2R	17852295	2R_17852295_SNP [dm3] 2R_21964790_SNP [dm6]	G	T	2.720e^-4	0.855	INTRON ppk9
X	9008677	X_9008677_SNP [dm3] X_9114644_SNP [dm6]	G	A	2.723e^-4	0.855	SYNONYMOUS_CODING AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2799952	3L_2799952_SNP [dm3] 3L_2799952_SNP [dm6]	G	A	2.737e^-4	0.855	INTRON CG43444	TF binding site mE1_TFBS_sbb
3R	12272941	3R_12272941_SNP [dm3] 3R_16447219_SNP [dm6]	G	T	2.744e^-4	0.855	INTRON Pak3
3L	16856615	3L_16856615_SNP [dm3] 3L_16863515_SNP [dm6]	C	T	2.746e^-4	0.855	SYNONYMOUS_CODING CG9951 UPSTREAM Rh4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16856714	3L_16856714_SNP [dm3] 3L_16863614_SNP [dm6]	G	A	2.746e^-4	0.855	SYNONYMOUS_CODING CG9951	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16856726	3L_16856726_SNP [dm3] 3L_16863626_SNP [dm6]	A	G	2.746e^-4	0.855	SYNONYMOUS_CODING CG9951	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6877835	3R_6877835_SNP [dm3] 3R_11052113_SNP [dm6]	T	C	2.753e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10681077	2R_10681077_SNP [dm3] 2R_14793572_SNP [dm6]	T	C	2.754e^-4	0.855	INTRON kn	TF binding site BDTNP1_TFBS_twi
3R	23314828	3R_23314828_SNP [dm3] 3R_27489106_SNP [dm6]	G	A	2.754e^-4	0.855	SYNONYMOUS_CODING Gr98a
3L	10340751	3L_10340751_SNP [dm3] 3L_10347651_SNP [dm6]	A	T	2.765e^-4	0.855	UPSTREAM CR44327 INTERGENIC
2L	13287993	2L_13287993_SNP [dm3] 2L_13287993_SNP [dm6]	C	A	2.766e^-4	0.855	NON_SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
2L	1068731	2L_1068731_SNP [dm3] 2L_1068731_SNP [dm6]	T	G	2.767e^-4	0.855	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3673355	2L_3673355_SNP [dm3] 2L_3673355_SNP [dm6]	A	G	2.767e^-4	0.855	INTRON CG34340
2L	3198132	2L_3198132_SNP [dm3] 2L_3198132_SNP [dm6]	C	G	2.785e^-4	0.855	INTRON CG34393
3L	17401279	3L_17401279_SNP [dm3] 3L_17408179_SNP [dm6]	C	T	2.790e^-4	0.855	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17887729	2L_17887729_SNP [dm3] 2L_17887729_SNP [dm6]	C	G	2.793e^-4	0.855	INTERGENIC
3R	25829675	3R_25829675_SNP [dm3] 3R_30003953_SNP [dm6]	A	T	2.796e^-4	0.855	UPSTREAM Nlp DOWNSTREAM Tace INTRON CG7911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	17890316	2L_17890316_SNP [dm3] 2L_17890316_SNP [dm6]	A	C	2.802e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10087148	X_10087148_SNP [dm3] X_10193115_SNP [dm6]	G	A	2.808e^-4	0.855	UTR_3_PRIME CG43902 INTRON CR44894
3L	10664308	3L_10664308_SNP [dm3] 3L_10671208_SNP [dm6]	C	T	2.810e^-4	0.855	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10268007	2L_10268007_SNP [dm3] 2L_10268007_SNP [dm6]	C	T	2.811e^-4	0.855	SYNONYMOUS_CODING CG4953 UPSTREAM CG4957
2L	911416	2L_911416_SNP [dm3] 2L_911416_SNP [dm6]	T	C	2.820e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9502756	2L_9502756_INS [dm3] 2L_9502756_INS [dm6]	C	CA	2.824e^-4	0.855	INTRON CG33298
X	18908001	X_18908001_DEL [dm3] X_19013968_DEL [dm6]	GTGG	G	2.828e^-4	0.855	INTRON CG43759
3R	23914676	3R_23914676_SNP [dm3] 3R_28088954_SNP [dm6]	A	G	2.828e^-4	0.855	UTR_3_PRIME CG34362
3L	6293970	3L_6293970_SNP [dm3] 3L_6300870_SNP [dm6]	G	T	2.831e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18883777	3R_18883777_SNP [dm3] 3R_23058055_SNP [dm6]	G	A	2.831e^-4	0.855	UPSTREAM CG17119 DOWNSTREAM sav INTRON CG17119	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12996100	2L_12996100_SNP [dm3] 2L_12996100_SNP [dm6]	T	C	2.838e^-4	0.855	INTRON CG12404
2L	1691660	2L_1691660_SNP [dm3] 2L_1691660_SNP [dm6]	G	A	2.839e^-4	0.855	INTRON chinmo
2L	14130976	2L_14130976_SNP [dm3] 2L_14130976_SNP [dm6]	C	T	2.841e^-4	0.855	INTERGENIC
3R	16300962	3R_16300962_INS [dm3] 3R_20475240_INS [dm6]	C	CTTCGCC	2.845e^-4	0.855	INTRON Gfrl
2R	16439927	2R_16439927_SNP [dm3] 2R_20552422_SNP [dm6]	A	C	2.854e^-4	0.855	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	918544	3L_918544_SNP [dm3] 3L_918544_SNP [dm6]	T	A	2.856e^-4	0.855	INTRON Glut1
3R	14082283	3R_14082283_SNP [dm3] 3R_18256561_SNP [dm6]	T	C	2.859e^-4	0.855	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
2L	13013303	2L_13013303_SNP [dm3] 2L_13013303_SNP [dm6]	T	C	2.862e^-4	0.855	UTR_3_PRIME CG9934 DOWNSTREAM CG9934 & 1 other
2L	11018892	2L_11018892_SNP [dm3] 2L_11018892_SNP [dm6]	C	T	2.871e^-4	0.855	DOWNSTREAM CG14913 INTRON Samuel
2R	2038959	2R_2038959_SNP [dm3] 2R_6151454_SNP [dm6]	G	A	2.878e^-4	0.855	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	2038963	2R_2038963_SNP [dm3] 2R_6151458_SNP [dm6]	T	G	2.878e^-4	0.855	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	18253018	2L_18253018_SNP [dm3] 2L_18253018_SNP [dm6]	C	A	2.884e^-4	0.855	DOWNSTREAM CG43406 INTRON CG42750
3R	22898967	3R_22898967_SNP [dm3] 3R_27073245_SNP [dm6]	T	A	2.884e^-4	0.855	INTERGENIC
2L	20297639	2L_20297639_SNP [dm3] 2L_20297639_SNP [dm6]	T	C	2.890e^-4	0.855	UPSTREAM CR43414 INTERGENIC
2R	12772222	2R_12772222_SNP [dm3] 2R_16884717_SNP [dm6]	G	A	2.900e^-4	0.855	DOWNSTREAM CG6472 INTRON CG8910
2L	16294109	2L_16294109_SNP [dm3] 2L_16294109_SNP [dm6]	G	A	2.901e^-4	0.855	UPSTREAM Cyp303a1 & 1 other INTERGENIC
2R	2040620	2R_2040620_SNP [dm3] 2R_6153115_SNP [dm6]	A	G	2.904e^-4	0.855	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR
3L	11669887	3L_11669887_SNP [dm3] 3L_11676787_SNP [dm6]	A	G	2.906e^-4	0.855	INTRON CG32085
2R	15676087	2R_15676087_SNP [dm3] 2R_19788582_SNP [dm6]	T	G	2.918e^-4	0.855	EXON CR45231
3R	25197704	3R_25197704_SNP [dm3] 3R_29371982_SNP [dm6]	A	T	2.918e^-4	0.855	INTERGENIC
2L	16257940	2L_16257940_DEL [dm3] 2L_16257940_DEL [dm6]	TT	T	2.922e^-4	0.855	UPSTREAM EndoGI & 1 other INTRON EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	9549588	3R_9549588_SNP [dm3] 3R_13723866_SNP [dm6]	G	A	2.931e^-4	0.855	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	10090487	2L_10090487_DEL [dm3] 2L_10090487_DEL [dm6]	ATTTTTA	A	2.931e^-4	0.855	DOWNSTREAM CG13133 INTRON CG44153
3R	23293534	3R_23293534_SNP [dm3] 3R_27467812_SNP [dm6]	T	C	2.945e^-4	0.855	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18373004	3R_18373004_SNP [dm3] 3R_22547282_SNP [dm6]	G	A	2.947e^-4	0.855	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7902507	2L_7902507_SNP [dm3] 2L_7902507_SNP [dm6]	A	G	2.952e^-4	0.855	INTRON Snoo
2R	11629453	2R_11629453_SNP [dm3] 2R_15741948_SNP [dm6]	G	A	2.958e^-4	0.855	INTRON CG30089
3R	23314027	3R_23314027_SNP [dm3] 3R_27488305_SNP [dm6]	T	G	2.963e^-4	0.855	NON_SYNONYMOUS_CODING Gr98a
2L	3673361	2L_3673361_SNP [dm3] 2L_3673361_SNP [dm6]	A	G	2.967e^-4	0.855	INTRON CG34340
3L	12279414	3L_12279414_SNP [dm3] 3L_12286314_SNP [dm6]	C	T	2.970e^-4	0.855	INTERGENIC
2L	5514506	2L_5514506_SNP [dm3] 2L_5514506_SNP [dm6]	T	C	2.977e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2040653	2R_2040653_SNP [dm3] 2R_6153148_SNP [dm6]	G	T	2.982e^-4	0.855	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR
3R	24046778	3R_24046778_SNP [dm3] 3R_28221056_SNP [dm6]	T	G	2.989e^-4	0.855	INTRON CG34354
2R	14827655	2R_14827655_SNP [dm3] 2R_18940150_SNP [dm6]	C	T	2.989e^-4	0.855	INTRON sano
2L	1087319	2L_1087319_SNP [dm3] 2L_1087319_SNP [dm6]	T	A	2.998e^-4	0.855	INTRON CG4629
3L	12245003	3L_12245003_SNP [dm3] 3L_12251903_SNP [dm6]	T	C	3.003e^-4	0.855	INTRON app
2R	2038886	2R_2038886_SNP [dm3] 2R_6151381_SNP [dm6]	T	A	3.004e^-4	0.855	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	675777	X_675777_SNP [dm3] X_781744_SNP [dm6]	C	A	3.006e^-4	0.855	NON_SYNONYMOUS_CODING fz3	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	14050836	3R_14050836_SNP [dm3] 3R_18225114_SNP [dm6]	C	T	3.008e^-4	0.855	SYNONYMOUS_CODING CG7168 DOWNSTREAM CG7993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3221726	2L_3221726_DEL [dm3] 2L_3221726_DEL [dm6]	TT	T	3.017e^-4	0.855	INTERGENIC
3L	9014600	3L_9014600_SNP [dm3] 3L_9021500_SNP [dm6]	T	G	3.023e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2038466	2R_2038466_INS [dm3] 2R_6150961_INS [dm6]	T	TT	3.024e^-4	0.855	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	3758012	2L_3758012_SNP [dm3] 2L_3758012_SNP [dm6]	G	A	3.025e^-4	0.855	INTRON CG43707
3R	5637571	3R_5637571_SNP [dm3] 3R_9811849_SNP [dm6]	C	T	3.037e^-4	0.855	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6979527	2L_6979527_SNP [dm3] 2L_6979527_SNP [dm6]	G	C	3.040e^-4	0.855	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13411984	2L_13411984_SNP [dm3] 2L_13411984_SNP [dm6]	A	T	3.048e^-4	0.855	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
X	21383039	X_21383039_SNP [dm3] X_21512012_SNP [dm6]	C	T	3.049e^-4	0.855	INTRON CR45082
3L	9474004	3L_9474004_SNP [dm3] 3L_9480904_SNP [dm6]	G	A	3.066e^-4	0.855	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5304629	3R_5304629_SNP [dm3] 3R_9478907_SNP [dm6]	A	C	3.068e^-4	0.855	INTRON CG16779
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	3.076e^-4	0.855	INTRON bbg	TF binding site mE1_TFBS_cad
3L	12530969	3L_12530969_SNP [dm3] 3L_12537869_SNP [dm6]	T	G	3.082e^-4	0.855	SYNONYMOUS_CODING sowah UTR_3_PRIME sowah UPSTREAM CG4069	TF binding site mE1_TFBS_cad
3L	4668002	3L_4668002_SNP [dm3] 3L_4668002_SNP [dm6]	A	G	3.086e^-4	0.855	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_twi
X	17245700	X_17245700_SNP [dm3] X_17351667_SNP [dm6]	G	A	3.087e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12675043	3L_12675043_SNP [dm3] 3L_12681943_SNP [dm6]	A	T	3.091e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12675044	3L_12675044_SNP [dm3] 3L_12681944_SNP [dm6]	G	A	3.091e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12626270	3L_12626270_SNP [dm3] 3L_12633170_SNP [dm6]	A	G	3.110e^-4	0.855	INTRON CR32111
3L	1239106	3L_1239106_SNP [dm3] 3L_1239106_SNP [dm6]	C	T	3.111e^-4	0.855	UPSTREAM CG9192 INTRON CG9194
3R	14997397	3R_14997397_SNP [dm3] 3R_19171675_SNP [dm6]	G	C	3.126e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1270478	3L_1270478_SNP [dm3] 3L_1270478_SNP [dm6]	G	A	3.126e^-4	0.855	INTRON CG9134
3R	20825394	3R_20825394_SNP [dm3] 3R_24999672_SNP [dm6]	C	T	3.129e^-4	0.855	INTRON tnc	TF binding site mE1_TFBS_chinmo
2R	19510841	2R_19510841_SNP [dm3] 2R_23623318_SNP [dm6]	A	G	3.136e^-4	0.855	INTERGENIC
3R	16014369	3R_16014369_SNP [dm3] 3R_20188647_SNP [dm6]	C	T	3.139e^-4	0.855	INTERGENIC
2R	15670557	2R_15670557_SNP [dm3] 2R_19783052_SNP [dm6]	C	A	3.142e^-4	0.855	DOWNSTREAM Obp56g INTERGENIC
2L	20125223	2L_20125223_SNP [dm3] 2L_20125223_SNP [dm6]	G	A	3.142e^-4	0.855	INTERGENIC
3R	20843341	3R_20843341_SNP [dm3] 3R_25017619_SNP [dm6]	C	T	3.142e^-4	0.855	NON_SYNONYMOUS_CODING tnc
X	16047867	X_16047867_DEL [dm3] X_16153834_DEL [dm6]	TATGTTTGT	T	3.146e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	9528961	3R_9528961_SNP [dm3] 3R_13703239_SNP [dm6]	G	A	3.149e^-4	0.855	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
3R	16031483	3R_16031483_SNP [dm3] 3R_20205761_SNP [dm6]	T	G	3.150e^-4	0.855	INTRON Nlg4
3L	17223265	3L_17223265_SNP [dm3] 3L_17230165_SNP [dm6]	C	T	3.154e^-4	0.855	INTRON Rbp6
2L	17885024	2L_17885024_SNP [dm3] 2L_17885024_SNP [dm6]	G	T	3.160e^-4	0.855	INTERGENIC
3L	12279294	3L_12279294_SNP [dm3] 3L_12286194_SNP [dm6]	C	T	3.161e^-4	0.855	INTERGENIC
3L	15250286	3L_15250286_SNP [dm3] 3L_15257186_SNP [dm6]	G	C	3.164e^-4	0.855	INTERGENIC
2L	11015860	2L_11015860_SNP [dm3] 2L_11015860_SNP [dm6]	T	C	3.168e^-4	0.855	SYNONYMOUS_CODING Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13664838	2L_13664838_SNP [dm3] 2L_13664838_SNP [dm6]	C	T	3.171e^-4	0.855	UPSTREAM CG18507 INTERGENIC
X	5441560	X_5441560_SNP [dm3] X_5547527_SNP [dm6]	A	T	3.172e^-4	0.855	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	15290062	2R_15290062_SNP [dm3] 2R_19402557_SNP [dm6]	C	G	3.181e^-4	0.855	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23438856	3R_23438856_SNP [dm3] 3R_27613134_SNP [dm6]	A	C	3.186e^-4	0.855	UPSTREAM Tusp INTRON Tusp
2R	10514880	2R_10514880_SNP [dm3] 2R_14627375_SNP [dm6]	G	A	3.189e^-4	0.855	INTERGENIC
3R	12317562	3R_12317562_SNP [dm3] 3R_16491840_SNP [dm6]	T	G	3.194e^-4	0.855	INTRON Cad89D
3L	4701992	3L_4701992_SNP [dm3] 3L_4701992_SNP [dm6]	T	C	3.197e^-4	0.855	INTRON RhoGEF64C
3L	18266854	3L_18266854_SNP [dm3] 3L_18273754_SNP [dm6]	A	C	3.199e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	5300142	3R_5300142_SNP [dm3] 3R_9474420_SNP [dm6]	G	A	3.208e^-4	0.855	INTRON CG16779
3L	1260105	3L_1260105_SNP [dm3] 3L_1260105_SNP [dm6]	T	C	3.217e^-4	0.855	INTRON CG9134
X	17338218	X_17338218_SNP [dm3] X_17444185_SNP [dm6]	G	C	3.219e^-4	0.855	UPSTREAM CG12994 INTERGENIC
2L	4622688	2L_4622688_SNP [dm3] 2L_4622688_SNP [dm6]	T	A	3.222e^-4	0.855	INTERGENIC
3L	904286	3L_904286_SNP [dm3] 3L_904286_SNP [dm6]	A	G	3.224e^-4	0.855	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	23537216	3R_23537216_SNP [dm3] 3R_27711494_SNP [dm6]	A	T	3.225e^-4	0.855	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10519516	2R_10519516_SNP [dm3] 2R_14632011_SNP [dm6]	G	T	3.227e^-4	0.855	DOWNSTREAM CG10131 INTERGENIC
2R	10567780	2R_10567780_DEL [dm3] 2R_14680275_DEL [dm6]	CC	C	3.230e^-4	0.855	INTRON mspo
3L	1812757	3L_1812757_INS [dm3] 3L_1812757_INS [dm6]	G	GCCATTCGATCAACTCG...	3.231e^-4	0.855	INTRON GV1
3R	15992203	3R_15992203_SNP [dm3] 3R_20166481_SNP [dm6]	G	C	3.232e^-4	0.855	INTERGENIC
3R	15992205	3R_15992205_INS [dm3] 3R_20166483_INS [dm6]	A	AGGA	3.232e^-4	0.855	INTERGENIC
3R	3246221	3R_3246221_SNP [dm3] 3R_7420499_SNP [dm6]	C	T	3.239e^-4	0.855	NON_SYNONYMOUS_CODING CG34023 UPSTREAM wa-cup DOWNSTREAM CG31544
X	21171394	X_21171394_SNP [dm3] X_21300367_SNP [dm6]	C	A	3.249e^-4	0.855	UTR_5_PRIME CG1718
X	702399	X_702399_SNP [dm3] X_808366_SNP [dm6]	T	C	3.260e^-4	0.855	UTR_3_PRIME CG43867 DOWNSTREAM Sec22	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10087138	X_10087138_SNP [dm3] X_10193105_SNP [dm6]	A	T	3.261e^-4	0.855	UTR_3_PRIME CG43902 INTRON CR44894
3L	13364824	3L_13364824_SNP [dm3] 3L_13371724_SNP [dm6]	T	A	3.263e^-4	0.855	INTERGENIC
2L	906697	2L_906697_SNP [dm3] 2L_906697_SNP [dm6]	C	T	3.263e^-4	0.855	INTERGENIC
2L	20502527	2L_20502527_SNP [dm3] 2L_20502527_SNP [dm6]	G	A	3.266e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1244068	3L_1244068_SNP [dm3] 3L_1244068_SNP [dm6]	A	G	3.271e^-4	0.855	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
2L	18616267	2L_18616267_SNP [dm3] 2L_18616267_SNP [dm6]	A	T	3.271e^-4	0.855	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	7693849	3R_7693849_SNP [dm3] 3R_11868127_SNP [dm6]	G	T	3.273e^-4	0.855	INTRON CG6959
2L	17895297	2L_17895297_SNP [dm3] 2L_17895297_SNP [dm6]	A	G	3.274e^-4	0.855	DOWNSTREAM CR43420 INTERGENIC
3L	8019423	3L_8019423_SNP [dm3] 3L_8026323_SNP [dm6]	A	T	3.281e^-4	0.855	INTRON nmo
X	16130574	X_16130574_DEL [dm3] X_16236541_DEL [dm6]	ATTCGAA	A	3.292e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18268313	2R_18268313_DEL [dm3] 2R_22380808_DEL [dm6]	AT	A	3.294e^-4	0.855	INTRON wrapper	TF binding site mE1_TFBS_cad
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	3.306e^-4	0.855	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24844113	3R_24844113_SNP [dm3] 3R_29018391_SNP [dm6]	G	A	3.306e^-4	0.855	INTRON wat
3R	23938472	3R_23938472_SNP [dm3] 3R_28112750_SNP [dm6]	C	A	3.307e^-4	0.855	INTERGENIC
3L	11429943	3L_11429943_SNP [dm3] 3L_11436843_SNP [dm6]	A	T	3.308e^-4	0.855	DOWNSTREAM CR44548 INTERGENIC
3L	1836560	3L_1836560_SNP [dm3] 3L_1836560_SNP [dm6]	C	A	3.308e^-4	0.855	INTERGENIC
3R	10983761	3R_10983761_SNP [dm3] 3R_15158039_SNP [dm6]	A	G	3.311e^-4	0.855	INTRON Gyc88E
2L	13230004	2L_13230004_SNP [dm3] 2L_13230004_SNP [dm6]	A	G	3.314e^-4	0.855	SYNONYMOUS_CODING CG16815	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9403559	2R_9403559_SNP [dm3] 2R_13516054_SNP [dm6]	G	A	3.330e^-4	0.856	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2303830	3L_2303830_SNP [dm3] 3L_2303830_SNP [dm6]	G	C	3.333e^-4	0.856	INTERGENIC
3R	15992270	3R_15992270_SNP [dm3] 3R_20166548_SNP [dm6]	C	A	3.335e^-4	0.856	INTERGENIC
X	15885996	X_15885996_SNP [dm3] X_15991963_SNP [dm6]	C	T	3.345e^-4	0.856	UTR_5_PRIME eIF5 UPSTREAM exd	TF binding site BDTNP1_TFBS_dl
3L	9590012	3L_9590012_SNP [dm3] 3L_9596912_SNP [dm6]	T	C	3.349e^-4	0.856	UPSTREAM CG14177 DOWNSTREAM CG42673 INTERGENIC
3R	8267066	3R_8267066_SNP [dm3] 3R_12441344_SNP [dm6]	T	C	3.350e^-4	0.856	UPSTREAM Desat1 INTRON Desat1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1235816	3L_1235816_SNP [dm3] 3L_1235816_SNP [dm6]	G	C	3.356e^-4	0.856	UTR_5_PRIME CG9194 DOWNSTREAM CG33966 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11299529	2R_11299529_SNP [dm3] 2R_15412024_SNP [dm6]	G	A	3.367e^-4	0.856	INTRON CG43729
3R	5720438	3R_5720438_SNP [dm3] 3R_9894716_SNP [dm6]	C	T	3.372e^-4	0.856	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20074155	2L_20074155_INS [dm3] 2L_20074155_INS [dm6]	G	GCTCATCAG	3.381e^-4	0.856	DOWNSTREAM bwa INTRON pr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8182519	3L_8182519_SNP [dm3] 3L_8189419_SNP [dm6]	T	C	3.383e^-4	0.856	SYNONYMOUS_CODING Atg18a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	17986116	2L_17986116_SNP [dm3] 2L_17986116_SNP [dm6]	G	A	3.384e^-4	0.856	UPSTREAM CG5681 INTERGENIC
2L	17890013	2L_17890013_SNP [dm3] 2L_17890013_SNP [dm6]	T	C	3.386e^-4	0.856	INTERGENIC
2L	4622633	2L_4622633_SNP [dm3] 2L_4622633_SNP [dm6]	A	T	3.394e^-4	0.856	INTERGENIC
2L	20064438	2L_20064438_SNP [dm3] 2L_20064438_SNP [dm6]	G	A	3.409e^-4	0.856	NON_SYNONYMOUS_CODING vls DOWNSTREAM lok	TF binding site mE1_TFBS_cad
3R	25893176	3R_25893176_SNP [dm3] 3R_30067454_SNP [dm6]	C	A	3.424e^-4	0.856	SYNONYMOUS_CODING sima
3L	16460995	3L_16460995_SNP [dm3] 3L_16467895_SNP [dm6]	T	G	3.424e^-4	0.856	INTRON CG33158
3L	10231788	3L_10231788_SNP [dm3] 3L_10238688_SNP [dm6]	G	A	3.424e^-4	0.856	INTERGENIC
2L	807344	2L_807344_SNP [dm3] 2L_807344_SNP [dm6]	C	A	3.428e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4622595	2L_4622595_SNP [dm3] 2L_4622595_SNP [dm6]	T	A	3.428e^-4	0.856	INTERGENIC
3L	11049617	3L_11049617_DEL [dm3] 3L_11056517_DEL [dm6]	TCTTTTCTTT	T	3.433e^-4	0.856	UPSTREAM CG7888 INTRON CG7888
2L	18606192	2L_18606192_SNP [dm3] 2L_18606192_SNP [dm6]	T	C	3.434e^-4	0.856	SYNONYMOUS_CODING CG31789 UPSTREAM CG10413 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2496736	2L_2496736_SNP [dm3] 2L_2496736_SNP [dm6]	G	C	3.434e^-4	0.856	SYNONYMOUS_CODING oaf UTR_3_PRIME oaf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18606367	2R_18606367_SNP [dm3] 2R_22718862_SNP [dm6]	C	T	3.439e^-4	0.856	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	905450	2L_905450_SNP [dm3] 2L_905450_SNP [dm6]	C	T	3.443e^-4	0.856	INTERGENIC
3R	16627374	3R_16627374_SNP [dm3] 3R_20801652_SNP [dm6]	A	C	3.448e^-4	0.856	INTRON Syp
3R	22945464	3R_22945464_SNP [dm3] 3R_27119742_SNP [dm6]	C	A	3.448e^-4	0.856	SYNONYMOUS_CODING CG5882	TF binding site mE1_TFBS_cad
X	14878406	X_14878406_SNP [dm3] X_14984373_SNP [dm6]	G	T	3.457e^-4	0.856	INTRON eag	TF binding site BDTNP1_TFBS_dl
X	2826075	X_2826075_SNP [dm3] X_2932042_SNP [dm6]	A	T	3.460e^-4	0.856	NON_SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo
2L	18584717	2L_18584717_SNP [dm3] 2L_18584717_SNP [dm6]	G	T	3.463e^-4	0.856	INTRON Pde11
2R	19015194	2R_19015194_SNP [dm3] 2R_23127671_SNP [dm6]	T	C	3.469e^-4	0.856	UPSTREAM CR44456 DOWNSTREAM CG3215 EXON CR44455
3R	25256205	3R_25256205_SNP [dm3] 3R_29430483_SNP [dm6]	G	A	3.470e^-4	0.856	INTRON Ptp99A
3L	6757542	3L_6757542_SNP [dm3] 3L_6764442_SNP [dm6]	T	A	3.474e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	16627407	3R_16627407_INS [dm3] 3R_20801685_INS [dm6]	A	ACC	3.478e^-4	0.856	INTRON Syp
3L	11095671	3L_11095671_SNP [dm3] 3L_11102571_SNP [dm6]	A	T	3.480e^-4	0.856	UPSTREAM Elo68beta DOWNSTREAM CG32071 INTRON Elo68alpha
2L	14141459	2L_14141459_SNP [dm3] 2L_14141459_SNP [dm6]	A	G	3.489e^-4	0.856	INTRON CG17341
2R	16791698	2R_16791698_SNP [dm3] 2R_20904193_SNP [dm6]	G	T	3.494e^-4	0.856	UPSTREAM otp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	3.497e^-4	0.856	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	11290686	2L_11290686_SNP [dm3] 2L_11290686_SNP [dm6]	A	G	3.500e^-4	0.856	EXON CR43409
2L	4622584	2L_4622584_SNP [dm3] 2L_4622584_SNP [dm6]	A	T	3.502e^-4	0.856	INTERGENIC
2L	14425074	2L_14425074_SNP [dm3] 2L_14425074_SNP [dm6]	T	G	3.504e^-4	0.856	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	8345730	3R_8345730_SNP [dm3] 3R_12520008_SNP [dm6]	G	C	3.518e^-4	0.856	INTRON Octbeta3R
2L	10081034	2L_10081034_SNP [dm3] 2L_10081034_SNP [dm6]	A	C	3.520e^-4	0.856	INTRON CG44153
X	8615344	X_8615344_SNP [dm3] X_8721311_SNP [dm6]	C	T	3.527e^-4	0.856	SYNONYMOUS_CODING CG1789	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	19750711	3R_19750711_INS [dm3] 3R_23924989_INS [dm6]	C	CC	3.529e^-4	0.856	DOWNSTREAM CG31141 INTRON Ndc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8737169	3R_8737169_SNP [dm3] 3R_12911447_SNP [dm6]	T	C	3.536e^-4	0.856	UPSTREAM CG10909 INTERGENIC
2L	14135199	2L_14135199_SNP [dm3] 2L_14135199_SNP [dm6]	T	G	3.537e^-4	0.856	INTRON CG17341
3L	906511	3L_906511_SNP [dm3] 3L_906511_SNP [dm6]	C	G	3.541e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9023741	3L_9023741_SNP [dm3] 3L_9030641_SNP [dm6]	A	G	3.541e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10854595	X_10854595_SNP [dm3] X_10960562_SNP [dm6]	A	C	3.564e^-4	0.859	INTRON Myo10A	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25476259	3R_25476259_SNP [dm3] 3R_29650537_SNP [dm6]	G	T	3.572e^-4	0.859	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14873436	X_14873436_SNP [dm3] X_14979403_SNP [dm6]	C	T	3.576e^-4	0.859	INTRON eag
X	14873658	X_14873658_SNP [dm3] X_14979625_SNP [dm6]	G	C	3.576e^-4	0.859	INTRON eag
X	10039892	X_10039892_SNP [dm3] X_10145859_SNP [dm6]	C	T	3.582e^-4	0.859	INTRON CR44894 & 1 other
3L	16461033	3L_16461033_SNP [dm3] 3L_16467933_SNP [dm6]	T	G	3.584e^-4	0.859	INTRON CG33158
2L	10694429	2L_10694429_SNP [dm3] 2L_10694429_SNP [dm6]	T	A	3.593e^-4	0.859	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2R	16930918	2R_16930918_SNP [dm3] 2R_21043413_SNP [dm6]	A	G	3.594e^-4	0.859	INTERGENIC
2L	18615273	2L_18615273_SNP [dm3] 2L_18615273_SNP [dm6]	G	T	3.612e^-4	0.861	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16822262	3L_16822262_SNP [dm3] 3L_16829162_SNP [dm6]	C	T	3.616e^-4	0.861	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18329702	2R_18329702_SNP [dm3] 2R_22442197_SNP [dm6]	C	T	3.619e^-4	0.861	INTERGENIC
3R	18275052	3R_18275052_SNP [dm3] 3R_22449330_SNP [dm6]	T	C	3.619e^-4	0.861	INTRON CG34376	TF binding site mE1_TFBS_cad
2L	20495394	2L_20495394_SNP [dm3] 2L_20495394_SNP [dm6]	C	T	3.640e^-4	0.862	SYNONYMOUS_CODING CG34007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13369024	3L_13369024_SNP [dm3] 3L_13375924_SNP [dm6]	T	C	3.648e^-4	0.862	INTERGENIC
2L	16257915	2L_16257915_SNP [dm3] 2L_16257915_SNP [dm6]	C	G	3.650e^-4	0.862	UPSTREAM EndoGI & 1 other INTRON EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	16304568	2R_16304568_SNP [dm3] 2R_20417063_SNP [dm6]	G	T	3.653e^-4	0.862	INTERGENIC
2R	7972372	2R_7972372_INS [dm3] 2R_12084867_INS [dm6]	A	ACTATAAATA	3.657e^-4	0.862	DOWNSTREAM jeb INTERGENIC
X	6020136	X_6020136_INS [dm3] X_6126103_INS [dm6]	G	GG	3.657e^-4	0.862	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18943284	2R_18943284_SNP [dm3] 2R_23055761_SNP [dm6]	G	A	3.662e^-4	0.862	INTRON CG44252
3R	13253586	3R_13253586_SNP [dm3] 3R_17427864_SNP [dm6]	T	G	3.666e^-4	0.862	INTRON CG5873	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4058001	2R_4058001_SNP [dm3] 2R_8170496_SNP [dm6]	G	A	3.669e^-4	0.862	SYNONYMOUS_CODING Mlh1 DOWNSTREAM Gasz	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17946316	2L_17946316_SNP [dm3] 2L_17946316_SNP [dm6]	A	T	3.669e^-4	0.862	INTERGENIC
3L	16817042	3L_16817042_SNP [dm3] 3L_16823942_SNP [dm6]	G	A	3.685e^-4	0.862	INTRON CG13024
X	10047474	X_10047474_SNP [dm3] X_10153441_SNP [dm6]	T	C	3.691e^-4	0.862	UPSTREAM CG12645 INTRON CR44894
2L	811062	2L_811062_SNP [dm3] 2L_811062_SNP [dm6]	T	C	3.691e^-4	0.862	UPSTREAM Dbp21E2 INTRON Nnf1b
3L	9263653	3L_9263653_SNP [dm3] 3L_9270553_SNP [dm6]	T	G	3.691e^-4	0.862	INTRON GluRIB
3L	12674993	3L_12674993_SNP [dm3] 3L_12681893_SNP [dm6]	C	A	3.693e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16318001	X_16318001_INS [dm3] X_16423968_INS [dm6]	C	CATTGGGC	3.698e^-4	0.862	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	11429929	3L_11429929_DEL [dm3] 3L_11436829_DEL [dm6]	TAGTT	T	3.706e^-4	0.862	DOWNSTREAM CR44548 INTERGENIC
3R	23320682	3R_23320682_SNP [dm3] 3R_27494960_SNP [dm6]	C	G	3.711e^-4	0.862	INTERGENIC
2L	8785534	2L_8785534_SNP [dm3] 2L_8785534_SNP [dm6]	T	C	3.713e^-4	0.862	INTERGENIC
2L	16256585	2L_16256585_SNP [dm3] 2L_16256585_SNP [dm6]	C	A	3.715e^-4	0.862	UPSTREAM PRL-1 INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3L	9484067	3L_9484067_SNP [dm3] 3L_9490967_SNP [dm6]	G	C	3.721e^-4	0.862	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12772265	2R_12772265_SNP [dm3] 2R_16884760_SNP [dm6]	T	A	3.730e^-4	0.863	DOWNSTREAM CG6472 INTRON CG8910
2L	910934	2L_910934_SNP [dm3] 2L_910934_SNP [dm6]	G	C	3.738e^-4	0.863	INTERGENIC
3L	705693	3L_705693_DEL [dm3] 3L_705693_DEL [dm6]	AC	A	3.742e^-4	0.863	DOWNSTREAM CG13895 EXON CR44514
X	9008631	X_9008631_SNP [dm3] X_9114598_SNP [dm6]	T	C	3.748e^-4	0.863	INTRON AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13211365	3L_13211365_SNP [dm3] 3L_13218265_SNP [dm6]	A	T	3.750e^-4	0.863	DOWNSTREAM CR43914 EXON CR45098
2L	10044917	2L_10044917_SNP [dm3] 2L_10044917_SNP [dm6]	A	T	3.752e^-4	0.863	INTERGENIC
X	702651	X_702651_SNP [dm3] X_808618_SNP [dm6]	G	T	3.767e^-4	0.863	UTR_3_PRIME CG43867 DOWNSTREAM Sec22
2L	14456033	2L_14456033_SNP [dm3] 2L_14456033_SNP [dm6]	T	G	3.770e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
2R	18838813	2R_18838813_SNP [dm3] 2R_22951290_SNP [dm6]	A	G	3.777e^-4	0.863	DOWNSTREAM CR32835 EXON CR32835
2L	20128138	2L_20128138_SNP [dm3] 2L_20128138_SNP [dm6]	T	C	3.779e^-4	0.863	INTERGENIC
3L	1247318	3L_1247318_SNP [dm3] 3L_1247318_SNP [dm6]	G	A	3.782e^-4	0.863	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17893596	2L_17893596_SNP [dm3] 2L_17893596_SNP [dm6]	C	A	3.790e^-4	0.863	UPSTREAM CR43420 INTERGENIC
3L	15223763	3L_15223763_INS [dm3] 3L_15230663_INS [dm6]	C	CT	3.798e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	16899715	X_16899715_SNP [dm3] X_17005682_SNP [dm6]	C	T	3.801e^-4	0.863	INTRON CG45002
3R	18375484	3R_18375484_SNP [dm3] 3R_22549762_SNP [dm6]	A	T	3.803e^-4	0.863	UPSTREAM bond DOWNSTREAM CR44062 INTERGENIC
3R	16013091	3R_16013091_SNP [dm3] 3R_20187369_SNP [dm6]	T	A	3.804e^-4	0.863	INTERGENIC
3L	18577237	3L_18577237_SNP [dm3] 3L_18584137_SNP [dm6]	A	T	3.810e^-4	0.863	EXON CR45435
3L	10841938	3L_10841938_INS [dm3] 3L_10848838_INS [dm6]	T	TTT	3.811e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7222297	2R_7222297_SNP [dm3] 2R_11334792_SNP [dm6]	T	C	3.819e^-4	0.863	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3861424	X_3861424_INS [dm3] X_3967391_INS [dm6]	A	ACACA	3.842e^-4	0.863	SPLICE_SITE_REGION CG6428 INTRON CG6428
2R	7700397	2R_7700397_SNP [dm3] 2R_11812892_SNP [dm6]	A	T	3.843e^-4	0.863	UTR_3_PRIME ths DOWNSTREAM ths
2R	17865373	2R_17865373_SNP [dm3] 2R_21977868_SNP [dm6]	T	C	3.848e^-4	0.863	SYNONYMOUS_CODING Gr58c DOWNSTREAM Gr58b
2L	16369268	2L_16369268_SNP [dm3] 2L_16369268_SNP [dm6]	G	A	3.851e^-4	0.863	INTERGENIC
3L	846529	3L_846529_SNP [dm3] 3L_846529_SNP [dm6]	G	C	3.853e^-4	0.863	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16013093	3R_16013093_SNP [dm3] 3R_20187371_SNP [dm6]	A	G	3.862e^-4	0.863	INTERGENIC
3L	17874182	3L_17874182_SNP [dm3] 3L_17881082_SNP [dm6]	G	A	3.864e^-4	0.863	NON_SYNONYMOUS_CODING CG7408
X	17323897	X_17323897_SNP [dm3] X_17429864_SNP [dm6]	T	A	3.865e^-4	0.863	INTRON CG12994
3R	17327450	3R_17327450_SNP [dm3] 3R_21501728_SNP [dm6]	G	A	3.865e^-4	0.863	INTRON C15
2R	14519751	2R_14519751_SNP [dm3] 2R_18632246_SNP [dm6]	G	A	3.868e^-4	0.863	UPSTREAM CG5482 DOWNSTREAM CG30122 INTERGENIC
3R	16869437	3R_16869437_SNP [dm3] 3R_21043715_SNP [dm6]	A	C	3.871e^-4	0.863	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	14130703	2L_14130703_SNP [dm3] 2L_14130703_SNP [dm6]	T	C	3.881e^-4	0.863	INTERGENIC
3L	2299284	3L_2299284_SNP [dm3] 3L_2299284_SNP [dm6]	T	C	3.884e^-4	0.863	INTRON MsR2	TF binding site mE1_TFBS_cad
2R	17868541	2R_17868541_SNP [dm3] 2R_21981036_SNP [dm6]	G	C	3.902e^-4	0.863	SYNONYMOUS_CODING Gr58a
X	2063389	X_2063389_SNP [dm3] X_2169356_SNP [dm6]	G	T	3.902e^-4	0.863	INTRON CG3630
3L	8885823	3L_8885823_SNP [dm3] 3L_8892723_SNP [dm6]	A	G	3.903e^-4	0.863	SYNONYMOUS_CODING Mcm7	TF binding site mE1_TFBS_chinmo
3L	3915926	3L_3915926_SNP [dm3] 3L_3915926_SNP [dm6]	C	A	3.911e^-4	0.863	INTRON Eip63F-1
3L	3597365	3L_3597365_SNP [dm3] 3L_3597365_SNP [dm6]	G	A	3.918e^-4	0.863	INTRON Eip63E
X	13193531	X_13193531_SNP [dm3] X_13299498_SNP [dm6]	C	T	3.928e^-4	0.863	SYNONYMOUS_CODING CG1622 UTR_3_PRIME CG1622 INTRON CG1764
3R	19920875	3R_19920875_SNP [dm3] 3R_24095153_SNP [dm6]	G	A	3.931e^-4	0.863	INTRON 4EHP
X	10047516	X_10047516_SNP [dm3] X_10153483_SNP [dm6]	C	G	3.933e^-4	0.863	UPSTREAM CG12645 INTRON CR44894
3L	889406	3L_889406_SNP [dm3] 3L_889406_SNP [dm6]	G	T	3.935e^-4	0.863	NON_SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19333711	2R_19333711_SNP [dm3] 2R_23446188_SNP [dm6]	A	G	3.942e^-4	0.863	INTRON CG43795
2R	11299539	2R_11299539_SNP [dm3] 2R_15412034_SNP [dm6]	A	T	3.956e^-4	0.863	INTRON CG43729
2R	11423994	2R_11423994_SNP [dm3] 2R_15536489_SNP [dm6]	G	T	3.957e^-4	0.863	SPLICE_SITE_REGION CG30471 INTRON CG30471
3L	6979410	3L_6979410_SNP [dm3] 3L_6986310_SNP [dm6]	T	G	3.960e^-4	0.863	INTERGENIC
3L	606009	3L_606009_SNP [dm3] 3L_606009_SNP [dm6]	A	C	3.963e^-4	0.863	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
3L	15702135	3L_15702135_SNP [dm3] 3L_15709035_SNP [dm6]	A	T	3.972e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16836884	3L_16836884_SNP [dm3] 3L_16843784_SNP [dm6]	C	A	3.972e^-4	0.863	SPLICE_SITE_REGION TSG101 DOWNSTREAM CG9669 INTRON TSG101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17959702	2L_17959702_SNP [dm3] 2L_17959702_SNP [dm6]	C	G	3.976e^-4	0.863	INTERGENIC
2L	11018944	2L_11018944_SNP [dm3] 2L_11018944_SNP [dm6]	G	T	3.976e^-4	0.863	DOWNSTREAM CG14913 INTRON Samuel
3L	9574474	3L_9574474_INS [dm3] 3L_9581374_INS [dm6]	T	TC	3.998e^-4	0.863	INTRON CG42673
3R	22945245	3R_22945245_SNP [dm3] 3R_27119523_SNP [dm6]	A	T	3.999e^-4	0.863	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG5880	TF binding site mE1_TFBS_cad
3L	3735622	3L_3735622_SNP [dm3] 3L_3735622_SNP [dm6]	C	A	4.000e^-4	0.863	INTRON CG32264
2L	12993025	2L_12993025_SNP [dm3] 2L_12993025_SNP [dm6]	A	G	4.003e^-4	0.863	DOWNSTREAM CG12404 INTERGENIC
3L	12330540	3L_12330540_SNP [dm3] 3L_12337440_SNP [dm6]	G	A	4.009e^-4	0.863	DOWNSTREAM CG10418 EXON CR45444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12556705	3L_12556705_SNP [dm3] 3L_12563605_SNP [dm6]	C	G	4.013e^-4	0.863	INTRON sowah
X	15462740	X_15462740_SNP [dm3] X_15568707_SNP [dm6]	T	A	4.036e^-4	0.863	UPSTREAM CG7860 INTERGENIC
2L	1386791	2L_1386791_SNP [dm3] 2L_1386791_SNP [dm6]	A	T	4.038e^-4	0.863	INTRON lea
3L	10230438	3L_10230438_SNP [dm3] 3L_10237338_SNP [dm6]	T	G	4.040e^-4	0.863	DOWNSTREAM CR44542 INTERGENIC
3L	15944736	3L_15944736_SNP [dm3] 3L_15951636_SNP [dm6]	A	C	4.052e^-4	0.863	INTRON Pka-C3
3L	16859289	3L_16859289_SNP [dm3] 3L_16866189_SNP [dm6]	T	A	4.054e^-4	0.863	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2987431	3L_2987431_DEL [dm3] 3L_2987431_DEL [dm6]	TT	T	4.063e^-4	0.863	INTERGENIC
X	9008626	X_9008626_SNP [dm3] X_9114593_SNP [dm6]	T	G	4.068e^-4	0.863	INTRON AP-1gamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10488261	2L_10488261_SNP [dm3] 2L_10488261_SNP [dm6]	A	C	4.075e^-4	0.863	SYNONYMOUS_CODING CG7456 UPSTREAM CG6144
X	20031273	X_20031273_SNP [dm3] X_20137240_SNP [dm6]	A	G	4.088e^-4	0.863	INTRON CG15322	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20080899	2L_20080899_DEL [dm3] 2L_20080899_DEL [dm6]	TGTAT	T	4.098e^-4	0.863	UPSTREAM fok DOWNSTREAM fok INTRON neb & 1 other	TF binding site mE1_TFBS_inv
3L	9047423	3L_9047423_SNP [dm3] 3L_9054323_SNP [dm6]	G	A	4.115e^-4	0.863	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13673465	2L_13673465_SNP [dm3] 2L_13673465_SNP [dm6]	C	T	4.125e^-4	0.863	DOWNSTREAM CG18507 INTERGENIC
3R	15996064	3R_15996064_SNP [dm3] 3R_20170342_SNP [dm6]	G	A	4.125e^-4	0.863	INTRON CG5023
2L	16257945	2L_16257945_SNP [dm3] 2L_16257945_SNP [dm6]	C	T	4.126e^-4	0.863	UPSTREAM EndoGI & 1 other INTRON EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	14132066	2L_14132066_SNP [dm3] 2L_14132066_SNP [dm6]	C	T	4.128e^-4	0.863	INTERGENIC
3L	9786795	3L_9786795_SNP [dm3] 3L_9793695_SNP [dm6]	C	G	4.130e^-4	0.863	NON_SYNONYMOUS_CODING Zasp67
3R	16013099	3R_16013099_SNP [dm3] 3R_20187377_SNP [dm6]	T	A	4.132e^-4	0.863	INTERGENIC
3R	16013100	3R_16013100_SNP [dm3] 3R_20187378_SNP [dm6]	A	T	4.132e^-4	0.863	INTERGENIC
3R	23345136	3R_23345136_SNP [dm3] 3R_27519414_SNP [dm6]	G	T	4.136e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12346229	2R_12346229_SNP [dm3] 2R_16458724_SNP [dm6]	C	A	4.137e^-4	0.863	INTERGENIC
3R	12272919	3R_12272919_SNP [dm3] 3R_16447197_SNP [dm6]	A	G	4.142e^-4	0.863	INTRON Pak3
3R	23938477	3R_23938477_SNP [dm3] 3R_28112755_SNP [dm6]	C	A	4.145e^-4	0.863	INTERGENIC
3R	24679032	3R_24679032_SNP [dm3] 3R_28853310_SNP [dm6]	A	C	4.153e^-4	0.863	SYNONYMOUS_CODING spg DOWNSTREAM Inx3
2R	14779481	2R_14779481_SNP [dm3] 2R_18891976_SNP [dm6]	A	C	4.159e^-4	0.863	INTRON sano
3R	24625051	3R_24625051_SNP [dm3] 3R_28799329_SNP [dm6]	G	A	4.160e^-4	0.863	INTERGENIC
3L	2304232	3L_2304232_SNP [dm3] 3L_2304232_SNP [dm6]	C	G	4.177e^-4	0.863	INTERGENIC
2L	18585209	2L_18585209_SNP [dm3] 2L_18585209_SNP [dm6]	G	A	4.182e^-4	0.863	INTRON Pde11
3R	5714824	3R_5714824_SNP [dm3] 3R_9889102_SNP [dm6]	A	G	4.184e^-4	0.863	INTRON Glut4EF
3R	16870055	3R_16870055_SNP [dm3] 3R_21044333_SNP [dm6]	C	T	4.184e^-4	0.863	NON_SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
2R	9853825	2R_9853825_SNP [dm3] 2R_13966320_SNP [dm6]	G	A	4.187e^-4	0.863	DOWNSTREAM CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15226089	3L_15226089_SNP [dm3] 3L_15232989_SNP [dm6]	A	G	4.187e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13574722	2R_13574722_SNP [dm3] 2R_17687217_SNP [dm6]	G	C	4.190e^-4	0.863	DOWNSTREAM CG42562 INTRON HPS4
X	17178722	X_17178722_SNP [dm3] X_17284689_SNP [dm6]	T	A	4.190e^-4	0.863	UPSTREAM CG8661 INTRON CG5445
3L	5938232	3L_5938232_SNP [dm3] 3L_5945132_SNP [dm6]	T	C	4.190e^-4	0.863	INTRON CG33993
2L	9520756	2L_9520756_SNP [dm3] 2L_9520756_SNP [dm6]	A	T	4.193e^-4	0.863	UPSTREAM Oatp30B DOWNSTREAM CG33298 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	7960590	2R_7960590_SNP [dm3] 2R_12073085_SNP [dm6]	C	G	4.194e^-4	0.863	INTRON CG8888
2R	2076969	2R_2076969_SNP [dm3] 2R_6189464_SNP [dm6]	T	G	4.200e^-4	0.863	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2L	16198774	2L_16198774_SNP [dm3] 2L_16198774_SNP [dm6]	A	G	4.202e^-4	0.863	INTERGENIC
2L	11354610	2L_11354610_SNP [dm3] 2L_11354610_SNP [dm6]	C	A	4.206e^-4	0.863	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	17808365	2L_17808365_SNP [dm3] 2L_17808365_SNP [dm6]	C	G	4.215e^-4	0.863	INTRON CadN2
2L	1999889	2L_1999889_SNP [dm3] 2L_1999889_SNP [dm6]	G	T	4.216e^-4	0.863	UPSTREAM CR43464 INTRON CG33543
3L	7325589	3L_7325589_SNP [dm3] 3L_7332489_SNP [dm6]	G	A	4.218e^-4	0.863	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
3R	16013084	3R_16013084_DEL [dm3] 3R_20187362_DEL [dm6]	AAA	G	4.219e^-4	0.863	INTERGENIC
2R	18556732	2R_18556732_SNP [dm3] 2R_22669227_SNP [dm6]	C	T	4.225e^-4	0.863	UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
2L	2797729	2L_2797729_SNP [dm3] 2L_2797729_SNP [dm6]	G	A	4.230e^-4	0.863	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	17894479	2L_17894479_SNP [dm3] 2L_17894479_SNP [dm6]	A	T	4.232e^-4	0.863	EXON CR43420
3L	4194801	3L_4194801_SNP [dm3] 3L_4194801_SNP [dm6]	A	T	4.241e^-4	0.863	NON_SYNONYMOUS_CODING CG43367 UTR_5_PRIME CG43367	TF binding site BDTNP1_TFBS_dl
3R	19516411	3R_19516411_SNP [dm3] 3R_23690689_SNP [dm6]	T	A	4.243e^-4	0.863	NON_SYNONYMOUS_CODING CG10254	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12772286	2R_12772286_SNP [dm3] 2R_16884781_SNP [dm6]	G	A	4.251e^-4	0.863	DOWNSTREAM CG6472 INTRON CG8910
3L	6576590	3L_6576590_SNP [dm3] 3L_6583490_SNP [dm6]	T	C	4.254e^-4	0.863	INTRON CG18769 & 1 other
X	8569945	X_8569945_SNP [dm3] X_8675912_SNP [dm6]	T	C	4.257e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10439712	2R_10439712_SNP [dm3] 2R_14552207_SNP [dm6]	G	A	4.260e^-4	0.863	INTRON ttv
2L	13288257	2L_13288257_SNP [dm3] 2L_13288257_SNP [dm6]	C	A	4.262e^-4	0.863	DOWNSTREAM CR44972 INTRON Uvrag
2R	8854000	2R_8854000_INS [dm3] 2R_12966495_INS [dm6]	G	GG	4.263e^-4	0.863	UTR_3_PRIME Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	2673352	3L_2673352_SNP [dm3] 3L_2673352_SNP [dm6]	A	T	4.263e^-4	0.863	INTRON Fife
3L	705755	3L_705755_SNP [dm3] 3L_705755_SNP [dm6]	G	C	4.266e^-4	0.863	DOWNSTREAM CG13895 & 1 other INTERGENIC
3R	25828773	3R_25828773_SNP [dm3] 3R_30003051_SNP [dm6]	G	T	4.275e^-4	0.863	DOWNSTREAM CG7911 INTRON Tace
3R	15122423	3R_15122423_SNP [dm3] 3R_19296701_SNP [dm6]	A	T	4.277e^-4	0.863	DOWNSTREAM CG44174 INTERGENIC
2R	18311011	2R_18311011_SNP [dm3] 2R_22423506_SNP [dm6]	G	C	4.280e^-4	0.863	NON_SYNONYMOUS_CODING rad50
3L	966218	3L_966218_SNP [dm3] 3L_966218_SNP [dm6]	A	G	4.283e^-4	0.863	INTRON Glut1
X	2085397	X_2085397_SNP [dm3] X_2191364_SNP [dm6]	T	A	4.298e^-4	0.863	DOWNSTREAM CG14053 INTRON Mct1
3R	10629914	3R_10629914_SNP [dm3] 3R_14804192_SNP [dm6]	G	T	4.298e^-4	0.863	UTR_3_PRIME CG14857 & 1 other
X	14586612	X_14586612_SNP [dm3] X_14692579_SNP [dm6]	T	C	4.299e^-4	0.863	INTRON NetB
X	10998437	X_10998437_SNP [dm3] X_11104404_SNP [dm6]	T	C	4.301e^-4	0.863	SYNONYMOUS_CODING CG42249	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23033710	3R_23033710_INS [dm3] 3R_27207988_INS [dm6]	C	CTGCCGCTGCCGCTGC...	4.312e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	21364188	3R_21364188_SNP [dm3] 3R_25538466_SNP [dm6]	C	T	4.312e^-4	0.863	INTRON msi
3L	1735748	3L_1735748_SNP [dm3] 3L_1735748_SNP [dm6]	T	C	4.314e^-4	0.863	UTR_5_PRIME Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
X	12302761	X_12302761_SNP [dm3] X_12408728_SNP [dm6]	T	C	4.322e^-4	0.863	UPSTREAM CG2574 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12169217	3L_12169217_SNP [dm3] 3L_12176117_SNP [dm6]	A	T	4.323e^-4	0.863	UPSTREAM Rh7 INTERGENIC
3L	12674991	3L_12674991_SNP [dm3] 3L_12681891_SNP [dm6]	C	T	4.325e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21256577	2L_21256577_DEL [dm3] 2L_21256577_DEL [dm6]	TG	T	4.328e^-4	0.863	DOWNSTREAM Hr39 INTRON Hr39
2R	18554476	2R_18554476_SNP [dm3] 2R_22666971_SNP [dm6]	C	G	4.333e^-4	0.863	UPSTREAM CG30273 & 2 others DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	9484050	3L_9484050_SNP [dm3] 3L_9490950_SNP [dm6]	C	T	4.333e^-4	0.863	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8722942	2R_8722942_INS [dm3] 2R_12835437_INS [dm6]	G	GAATCGGGGG	4.334e^-4	0.863	INTERGENIC
3L	16461022	3L_16461022_SNP [dm3] 3L_16467922_SNP [dm6]	T	C	4.338e^-4	0.863	INTRON CG33158
3R	19180137	3R_19180137_SNP [dm3] 3R_23354415_SNP [dm6]	A	G	4.342e^-4	0.863	SYNONYMOUS_CODING DNApol-epsilon DOWNSTREAM ATPsyn-Cf6	TF binding site mE1_TFBS_sens
2R	14719172	2R_14719172_SNP [dm3] 2R_18831667_SNP [dm6]	G	C	4.344e^-4	0.863	INTRON CG15082
X	12415595	X_12415595_SNP [dm3] X_12521562_SNP [dm6]	G	A	4.348e^-4	0.863	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17183948	3R_17183948_SNP [dm3] 3R_21358226_SNP [dm6]	T	G	4.348e^-4	0.863	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
2R	19340671	2R_19340671_SNP [dm3] 2R_23453148_SNP [dm6]	A	G	4.350e^-4	0.863	INTRON CG43795
2R	18479916	2R_18479916_SNP [dm3] 2R_22592411_SNP [dm6]	C	G	4.365e^-4	0.865	UTR_5_PRIME dnr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	12986433	2L_12986433_SNP [dm3] 2L_12986433_SNP [dm6]	A	T	4.373e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17141407	3R_17141407_SNP [dm3] 3R_21315685_SNP [dm6]	C	G	4.390e^-4	0.866	EXON Hsromega	TF binding site mE1_TFBS_zfh1
2L	14134600	2L_14134600_SNP [dm3] 2L_14134600_SNP [dm6]	A	G	4.393e^-4	0.866	START_GAINED CG17341 UTR_5_PRIME CG17341	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6380233	2R_6380233_SNP [dm3] 2R_10492728_SNP [dm6]	A	G	4.401e^-4	0.866	INTRON lola
2L	18403193	2L_18403193_SNP [dm3] 2L_18403193_SNP [dm6]	T	A	4.401e^-4	0.866	UPSTREAM CR44487 INTERGENIC
3L	12244904	3L_12244904_SNP [dm3] 3L_12251804_SNP [dm6]	T	C	4.402e^-4	0.866	INTRON app
2R	12772290	2R_12772290_SNP [dm3] 2R_16884785_SNP [dm6]	G	A	4.405e^-4	0.866	DOWNSTREAM CG6472 INTRON CG8910
3L	3903876	3L_3903876_SNP [dm3] 3L_3903876_SNP [dm6]	C	A	4.411e^-4	0.866	SYNONYMOUS_CODING Sc2 UPSTREAM Ubi-p63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12986761	2L_12986761_SNP [dm3] 2L_12986761_SNP [dm6]	T	A	4.412e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1277218	3L_1277218_SNP [dm3] 3L_1277218_SNP [dm6]	C	T	4.414e^-4	0.866	INTRON CG32333
3L	17317866	3L_17317866_SNP [dm3] 3L_17324766_SNP [dm6]	C	G	4.428e^-4	0.866	UTR_3_PRIME CG13725 DOWNSTREAM CG13724
3R	16902125	3R_16902125_SNP [dm3] 3R_21076403_SNP [dm6]	T	C	4.432e^-4	0.866	DOWNSTREAM HHEX INTRON dmrt93B	TF binding site mE1_TFBS_chinmo
2R	5647759	2R_5647759_INS [dm3] 2R_9760254_INS [dm6]	A	AGTAAAGTA	4.442e^-4	0.866	INTRON trpl
3L	9108647	3L_9108647_SNP [dm3] 3L_9115547_SNP [dm6]	C	T	4.454e^-4	0.866	INTRON bol
3L	3520380	3L_3520380_SNP [dm3] 3L_3520380_SNP [dm6]	A	C	4.461e^-4	0.866	INTRON Eip63E
3L	8709349	3L_8709349_SNP [dm3] 3L_8716249_SNP [dm6]	G	A	4.464e^-4	0.866	INTERGENIC
3L	2303961	3L_2303961_SNP [dm3] 3L_2303961_SNP [dm6]	A	T	4.465e^-4	0.866	INTERGENIC
X	14711099	X_14711099_SNP [dm3] X_14817066_SNP [dm6]	T	G	4.467e^-4	0.866	INTRON rut
3L	966216	3L_966216_SNP [dm3] 3L_966216_SNP [dm6]	G	T	4.469e^-4	0.866	INTRON Glut1
2R	16744266	2R_16744266_SNP [dm3] 2R_20856761_SNP [dm6]	C	T	4.476e^-4	0.866	INTERGENIC
2L	17868790	2L_17868790_SNP [dm3] 2L_17868790_SNP [dm6]	G	T	4.480e^-4	0.866	INTRON CadN2
X	2265727	X_2265727_SNP [dm3] X_2371694_SNP [dm6]	T	C	4.481e^-4	0.866	DOWNSTREAM PsGEF INTRON PsGEF
3L	10528364	3L_10528364_SNP [dm3] 3L_10535264_SNP [dm6]	C	A	4.486e^-4	0.866	INTRON A2bp1
3R	16692910	3R_16692910_SNP [dm3] 3R_20867188_SNP [dm6]	G	C	4.488e^-4	0.866	UPSTREAM CG3822 INTERGENIC
2R	15038342	2R_15038342_SNP [dm3] 2R_19150837_SNP [dm6]	G	A	4.490e^-4	0.866	INTRON ena	TF binding site mE1_TFBS_Trl
2L	4046350	2L_4046350_SNP [dm3] 2L_4046350_SNP [dm6]	A	T	4.494e^-4	0.866	INTRON ed	TF binding site mE1_TFBS_HSA
3L	4979632	3L_4979632_SNP [dm3] 3L_4979632_SNP [dm6]	A	G	4.496e^-4	0.866	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6371845	2R_6371845_SNP [dm3] 2R_10484340_SNP [dm6]	G	A	4.499e^-4	0.866	UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2299041	3L_2299041_SNP [dm3] 3L_2299041_SNP [dm6]	G	A	4.502e^-4	0.866	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13938499	2L_13938499_SNP [dm3] 2L_13938499_SNP [dm6]	T	G	4.509e^-4	0.866	INTRON Ance-3
3R	18046596	3R_18046596_SNP [dm3] 3R_22220874_SNP [dm6]	T	C	4.525e^-4	0.866	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17867505	2R_17867505_SNP [dm3] 2R_21980000_SNP [dm6]	C	G	4.531e^-4	0.866	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	10035699	3R_10035699_SNP [dm3] 3R_14209977_SNP [dm6]	A	C	4.532e^-4	0.866	INTRON Dop1R1
2L	1068431	2L_1068431_DEL [dm3] 2L_1068431_DEL [dm6]	GACCAG	G	4.535e^-4	0.866	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13189885	X_13189885_SNP [dm3] X_13295852_SNP [dm6]	C	T	4.546e^-4	0.866	SYNONYMOUS_CODING CG1764
2L	20090979	2L_20090979_SNP [dm3] 2L_20090979_SNP [dm6]	A	G	4.557e^-4	0.866	UPSTREAM CG10721 INTRON CG10747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16523741	2L_16523741_DEL [dm3] 2L_16523741_DEL [dm6]	AGAC	A	4.561e^-4	0.866	INTRON CG5953
3L	12279242	3L_12279242_SNP [dm3] 3L_12286142_SNP [dm6]	C	T	4.562e^-4	0.866	INTERGENIC
3L	4701993	3L_4701993_INS [dm3] 3L_4701993_INS [dm6]	T	TG	4.565e^-4	0.866	INTRON RhoGEF64C
3L	7325588	3L_7325588_SNP [dm3] 3L_7332488_SNP [dm6]	A	G	4.572e^-4	0.866	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
2L	13254121	2L_13254121_SNP [dm3] 2L_13254121_SNP [dm6]	G	T	4.575e^-4	0.866	INTRON CG31728
3L	20074124	3L_20074124_SNP [dm3] 3L_20081024_SNP [dm6]	A	G	4.576e^-4	0.866	INTRON sNPF-R
3L	16471686	3L_16471686_SNP [dm3] 3L_16478586_SNP [dm6]	T	G	4.577e^-4	0.866	INTRON CG33158 & 1 other
2R	15192333	2R_15192333_SNP [dm3] 2R_19304828_SNP [dm6]	A	T	4.588e^-4	0.866	UPSTREAM CG7461 DOWNSTREAM Tab2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16379671	2L_16379671_INS [dm3] 2L_16379671_INS [dm6]	C	CC	4.606e^-4	0.866	INTERGENIC
3L	899310	3L_899310_SNP [dm3] 3L_899310_SNP [dm6]	G	A	4.609e^-4	0.866	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12478675	2R_12478675_SNP [dm3] 2R_16591170_SNP [dm6]	C	A	4.615e^-4	0.866	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
2L	20128009	2L_20128009_SNP [dm3] 2L_20128009_SNP [dm6]	A	T	4.618e^-4	0.866	INTERGENIC
X	15428839	X_15428839_SNP [dm3] X_15534806_SNP [dm6]	T	G	4.618e^-4	0.866	INTRON Ac13E
3R	22382286	3R_22382286_SNP [dm3] 3R_26556564_SNP [dm6]	T	A	4.622e^-4	0.866	INTRON scrib
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	4.623e^-4	0.866	INTRON bbg	TF binding site mE1_TFBS_cad
3R	25266612	3R_25266612_SNP [dm3] 3R_29440890_SNP [dm6]	G	T	4.624e^-4	0.866	INTRON Ptp99A
3R	5443912	3R_5443912_INS [dm3] 3R_9618190_INS [dm6]	T	TT	4.627e^-4	0.866	INTRON CG8312
2L	14816274	2L_14816274_SNP [dm3] 2L_14816274_SNP [dm6]	T	G	4.630e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

FarPoint_Butanedione phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results