DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.605e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02493

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.2614	0.072

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2420 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12608469	3L_12608469_SNP [dm3] 3L_12615369_SNP [dm6]	C	T	7.374e^-7	0.572	INTRON caup
2R	17792554	2R_17792554_SNP [dm3] 2R_21905049_SNP [dm6]	G	T	7.585e^-7	0.572	INTRON Fili
3L	13895657	3L_13895657_SNP [dm3] 3L_13902557_SNP [dm6]	C	G	1.424e^-6	0.572	UTR_5_PRIME dysc
X	19200512	X_19200512_DEL [dm3] X_19306479_DEL [dm6]	ATGTT	C	1.564e^-6	0.572	INTRON CG8051
2R	2118406	2R_2118406_SNP [dm3] 2R_6230901_SNP [dm6]	C	G	2.097e^-6	0.572	INTRON bin3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17539581	3R_17539581_SNP [dm3] 3R_21713859_SNP [dm6]	T	C	2.594e^-6	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20845368	2L_20845368_SNP [dm3] 2L_20845368_SNP [dm6]	C	T	3.123e^-6	0.572	SYNONYMOUS_CODING CG31676
3R	15879585	3R_15879585_SNP [dm3] 3R_20053863_SNP [dm6]	G	C	3.738e^-6	0.572	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15628255	3R_15628255_DEL [dm3] 3R_19802533_DEL [dm6]	TT	T	4.086e^-6	0.572	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20844492	2L_20844492_SNP [dm3] 2L_20844492_SNP [dm6]	A	T	4.389e^-6	0.572	INTRON CG31676
2L	4500317	2L_4500317_SNP [dm3] 2L_4500317_SNP [dm6]	G	A	4.666e^-6	0.572	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12397827	3R_12397827_SNP [dm3] 3R_16572105_SNP [dm6]	C	T	4.694e^-6	0.572	NON_SYNONYMOUS_CODING CG14891 DOWNSTREAM CG42342	TF binding site mE1_TFBS_sens
3R	23441235	3R_23441235_SNP [dm3] 3R_27615513_SNP [dm6]	G	C	4.697e^-6	0.572	INTRON Tusp
2L	4500263	2L_4500263_SNP [dm3] 2L_4500263_SNP [dm6]	T	C	5.825e^-6	0.572	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8755239	2L_8755239_SNP [dm3] 2L_8755239_SNP [dm6]	C	G	5.865e^-6	0.572	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	5.986e^-6	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	15880417	3R_15880417_SNP [dm3] 3R_20054695_SNP [dm6]	C	A	6.008e^-6	0.572	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15624987	3L_15624987_SNP [dm3] 3L_15631887_SNP [dm6]	C	G	6.251e^-6	0.572	INTRON comm3
2L	18483147	2L_18483147_SNP [dm3] 2L_18483147_SNP [dm6]	A	C	6.606e^-6	0.572	INTRON CG10283
2L	4028989	2L_4028989_SNP [dm3] 2L_4028989_SNP [dm6]	T	G	7.196e^-6	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	18417852	2L_18417852_SNP [dm3] 2L_18417852_SNP [dm6]	G	C	7.471e^-6	0.572	INTERGENIC
3R	1939759	3R_1939759_SNP [dm3] 3R_6114037_SNP [dm6]	T	C	7.605e^-6	0.572	INTERGENIC
3R	23441237	3R_23441237_DEL [dm3] 3R_27615515_DEL [dm6]	GCAGCCCG	C	7.979e^-6	0.572	INTRON Tusp
3R	17544014	3R_17544014_SNP [dm3] 3R_21718292_SNP [dm6]	T	C	8.841e^-6	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	18750592	2L_18750592_SNP [dm3] 2L_18750592_SNP [dm6]	T	A	8.938e^-6	0.572	INTERGENIC
3L	10398261	3L_10398261_SNP [dm3] 3L_10405161_SNP [dm6]	G	A	9.409e^-6	0.572	INTERGENIC
3R	6724640	3R_6724640_SNP [dm3] 3R_10898918_SNP [dm6]	G	C	9.734e^-6	0.572	UPSTREAM CR45578 INTERGENIC
2R	4405904	2R_4405904_SNP [dm3] 2R_8518399_SNP [dm6]	T	A	9.758e^-6	0.572	INTRON mtt
2L	17609019	2L_17609019_SNP [dm3] 2L_17609019_SNP [dm6]	A	C	1.056e^-5	0.572	INTERGENIC
2L	12330237	2L_12330237_SNP [dm3] 2L_12330237_SNP [dm6]	G	T	1.078e^-5	0.572	INTERGENIC
3L	18518898	3L_18518898_SNP [dm3] 3L_18525798_SNP [dm6]	T	A	1.141e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_run
3L	7489813	3L_7489813_SNP [dm3] 3L_7496713_SNP [dm6]	G	A	1.142e^-5	0.572	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	6708308	2L_6708308_SNP [dm3] 2L_6708308_SNP [dm6]	C	T	1.182e^-5	0.572	UTR_5_PRIME Tsp	TF binding site mE1_TFBS_HSA
3L	10736974	3L_10736974_INS [dm3] 3L_10743874_INS [dm6]	T	TT	1.202e^-5	0.572	INTERGENIC
2L	4500357	2L_4500357_SNP [dm3] 2L_4500357_SNP [dm6]	C	G	1.262e^-5	0.572	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7490502	3L_7490502_SNP [dm3] 3L_7497402_SNP [dm6]	A	G	1.266e^-5	0.572	SYNONYMOUS_CODING CG8539
3R	17540555	3R_17540555_SNP [dm3] 3R_21714833_SNP [dm6]	A	G	1.278e^-5	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17540572	3R_17540572_SNP [dm3] 3R_21714850_SNP [dm6]	A	G	1.278e^-5	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17540687	3R_17540687_SNP [dm3] 3R_21714965_SNP [dm6]	T	C	1.278e^-5	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20846039	2L_20846039_SNP [dm3] 2L_20846039_SNP [dm6]	G	T	1.296e^-5	0.572	INTRON CG31676
3L	3458248	3L_3458248_SNP [dm3] 3L_3458248_SNP [dm6]	C	T	1.356e^-5	0.572	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17539644	3R_17539644_SNP [dm3] 3R_21713922_SNP [dm6]	A	C	1.358e^-5	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3587147	3L_3587147_SNP [dm3] 3L_3587147_SNP [dm6]	A	C	1.408e^-5	0.572	INTRON Eip63E
3R	12971920	3R_12971920_SNP [dm3] 3R_17146198_SNP [dm6]	G	A	1.414e^-5	0.572	SYNONYMOUS_CODING m-cup	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1796312	3R_1796312_SNP [dm3] 3R_5970590_SNP [dm6]	C	T	1.455e^-5	0.572	EXON CR44926
3L	15034143	3L_15034143_SNP [dm3] 3L_15041043_SNP [dm6]	A	T	1.503e^-5	0.572	DOWNSTREAM Rpn12R INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10246421	3L_10246421_SNP [dm3] 3L_10253321_SNP [dm6]	G	T	1.551e^-5	0.572	INTERGENIC
2R	9836578	2R_9836578_SNP [dm3] 2R_13949073_SNP [dm6]	T	C	1.554e^-5	0.572	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16783002	3R_16783002_SNP [dm3] 3R_20957280_SNP [dm6]	C	T	1.560e^-5	0.572	UPSTREAM Atpalpha INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	1.655e^-5	0.572	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	20546048	2L_20546048_SNP [dm3] 2L_20546048_SNP [dm6]	C	T	1.686e^-5	0.572	INTERGENIC
3R	19163770	3R_19163770_SNP [dm3] 3R_23338048_SNP [dm6]	T	A	1.716e^-5	0.572	INTRON pnt	TF binding site mE1_TFBS_inv
X	6150143	X_6150143_DEL [dm3] X_6256110_DEL [dm6]	CC	C	1.723e^-5	0.572	UPSTREAM Rbcn-3A INTRON Spx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6167254	3L_6167254_SNP [dm3] 3L_6174154_SNP [dm6]	A	T	1.742e^-5	0.572	UPSTREAM CG7376 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	15880408	3R_15880408_INS [dm3] 3R_20054686_INS [dm6]	A	AATAAATAAA	1.747e^-5	0.572	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17311508	2R_17311508_SNP [dm3] 2R_21424003_SNP [dm6]	C	T	1.753e^-5	0.572	INTRON Sdc
3L	14088219	3L_14088219_SNP [dm3] 3L_14095119_SNP [dm6]	A	G	1.795e^-5	0.572	SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8519150	2R_8519150_SNP [dm3] 2R_12631645_SNP [dm6]	A	G	1.799e^-5	0.572	INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7490545	3L_7490545_SNP [dm3] 3L_7497445_SNP [dm6]	A	G	1.840e^-5	0.572	NON_SYNONYMOUS_CODING CG8539
2L	8661642	2L_8661642_SNP [dm3] 2L_8661642_SNP [dm6]	C	G	1.868e^-5	0.572	INTRON Sema-1a
3R	19797618	3R_19797618_SNP [dm3] 3R_23971896_SNP [dm6]	C	G	1.884e^-5	0.572	INTRON CG31140
3L	7490521	3L_7490521_SNP [dm3] 3L_7497421_SNP [dm6]	G	A	1.912e^-5	0.572	NON_SYNONYMOUS_CODING CG8539
3L	17521398	3L_17521398_SNP [dm3] 3L_17528298_SNP [dm6]	C	T	1.953e^-5	0.572	NON_SYNONYMOUS_CODING Edc3 DOWNSTREAM snoRNA:Edc3-a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7490433	3L_7490433_SNP [dm3] 3L_7497333_SNP [dm6]	A	T	1.972e^-5	0.572	UTR_3_PRIME CG8539
3L	7485118	3L_7485118_SNP [dm3] 3L_7492018_SNP [dm6]	T	A	1.983e^-5	0.572	NON_SYNONYMOUS_CODING Cyp316a1 SPLICE_SITE_REGION Cyp316a1
3R	15880404	3R_15880404_MNP [dm3] 3R_20054682_MNP [dm6]	GTT	AAA	2.054e^-5	0.584	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17548100	3R_17548100_SNP [dm3] 3R_21722378_SNP [dm6]	C	A	2.153e^-5	0.586	INTRON CR44096	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
3R	17539980	3R_17539980_SNP [dm3] 3R_21714258_SNP [dm6]	T	A	2.174e^-5	0.586	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15880401	3R_15880401_SNP [dm3] 3R_20054679_SNP [dm6]	T	A	2.254e^-5	0.586	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15879348	3R_15879348_SNP [dm3] 3R_20053626_SNP [dm6]	T	C	2.296e^-5	0.586	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4500200	2L_4500200_SNP [dm3] 2L_4500200_SNP [dm6]	G	A	2.361e^-5	0.586	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17499902	3L_17499902_SNP [dm3] 3L_17506802_SNP [dm6]	C	A	2.399e^-5	0.586	INTRON Oatp74D
X	21456386	X_21456386_SNP [dm3] X_21585359_SNP [dm6]	G	T	2.416e^-5	0.586	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2R	8518966	2R_8518966_SNP [dm3] 2R_12631461_SNP [dm6]	C	G	2.458e^-5	0.586	SYNONYMOUS_CODING muskelin
3L	10246570	3L_10246570_SNP [dm3] 3L_10253470_SNP [dm6]	C	T	2.466e^-5	0.586	INTERGENIC
3L	7489870	3L_7489870_SNP [dm3] 3L_7496770_SNP [dm6]	G	A	2.467e^-5	0.586	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3R	17552545	3R_17552545_SNP [dm3] 3R_21726823_SNP [dm6]	G	A	2.469e^-5	0.586	INTERGENIC
3R	15637215	3R_15637215_SNP [dm3] 3R_19811493_SNP [dm6]	C	T	2.512e^-5	0.586	INTRON bnl
2R	17467954	2R_17467954_SNP [dm3] 2R_21580449_SNP [dm6]	T	C	2.517e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16697639	3L_16697639_SNP [dm3] 3L_16704539_SNP [dm6]	A	G	2.566e^-5	0.586	UPSTREAM CG9692 INTRON Lasp & 1 other
3L	7490450	3L_7490450_SNP [dm3] 3L_7497350_SNP [dm6]	C	T	2.594e^-5	0.586	UTR_3_PRIME CG8539
2L	20700085	2L_20700085_SNP [dm3] 2L_20700085_SNP [dm6]	T	C	2.595e^-5	0.586	INTRON Hr38
3R	17547801	3R_17547801_SNP [dm3] 3R_21722079_SNP [dm6]	A	T	2.596e^-5	0.586	INTRON CR44096	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15628278	3R_15628278_SNP [dm3] 3R_19802556_SNP [dm6]	T	C	2.770e^-5	0.618	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18405341	2L_18405341_SNP [dm3] 2L_18405341_SNP [dm6]	C	T	2.820e^-5	0.622	DOWNSTREAM CR44487 INTERGENIC
3R	15880400	3R_15880400_SNP [dm3] 3R_20054678_SNP [dm6]	T	G	2.908e^-5	0.634	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17543867	3R_17543867_INS [dm3] 3R_21718145_INS [dm6]	C	CCTCCTAAC	2.949e^-5	0.636	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	4656913	3L_4656913_SNP [dm3] 3L_4656913_SNP [dm6]	A	C	3.126e^-5	0.638	INTRON axo
3L	5390705	3L_5390705_SNP [dm3] 3L_5397605_SNP [dm6]	T	C	3.143e^-5	0.638	INTERGENIC
X	8951602	X_8951602_SNP [dm3] X_9057569_SNP [dm6]	A	C	3.169e^-5	0.638	SYNONYMOUS_CODING CG15365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11363948	3L_11363948_SNP [dm3] 3L_11370848_SNP [dm6]	G	A	3.177e^-5	0.638	INTERGENIC
3R	17540597	3R_17540597_SNP [dm3] 3R_21714875_SNP [dm6]	G	T	3.259e^-5	0.638	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7490187	3L_7490187_SNP [dm3] 3L_7497087_SNP [dm6]	G	T	3.324e^-5	0.638	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2R	17793190	2R_17793190_SNP [dm3] 2R_21905685_SNP [dm6]	A	C	3.378e^-5	0.638	INTRON Fili
3R	17543984	3R_17543984_SNP [dm3] 3R_21718262_SNP [dm6]	A	T	3.427e^-5	0.638	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2R	11667872	2R_11667872_SNP [dm3] 2R_15780367_SNP [dm6]	G	A	3.447e^-5	0.638	DOWNSTREAM Zasp52 INTRON Zasp52
2R	8519089	2R_8519089_SNP [dm3] 2R_12631584_SNP [dm6]	C	T	3.487e^-5	0.638	SYNONYMOUS_CODING muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4500218	2L_4500218_SNP [dm3] 2L_4500218_SNP [dm6]	A	G	3.504e^-5	0.638	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2601432	2L_2601432_SNP [dm3] 2L_2601432_SNP [dm6]	T	C	3.505e^-5	0.638	EXON CR44789
2R	8530029	2R_8530029_SNP [dm3] 2R_12642524_SNP [dm6]	G	A	3.507e^-5	0.638	INTRON CG8785
3L	7477376	3L_7477376_SNP [dm3] 3L_7484276_SNP [dm6]	A	T	3.513e^-5	0.638	INTERGENIC
3L	9793883	3L_9793883_SNP [dm3] 3L_9800783_SNP [dm6]	A	T	3.566e^-5	0.638	DOWNSTREAM Ilp3 & 1 other INTRON CG32052
X	21096537	X_21096537_SNP [dm3] X_21225510_SNP [dm6]	A	T	3.590e^-5	0.638	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10719700	3R_10719700_SNP [dm3] 3R_14893978_SNP [dm6]	A	G	3.597e^-5	0.638	UPSTREAM CG14860 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11597470	3L_11597470_SNP [dm3] 3L_11604370_SNP [dm6]	A	G	3.754e^-5	0.638	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5565116	3L_5565116_SNP [dm3] 3L_5572016_SNP [dm6]	G	A	3.792e^-5	0.638	INTRON Msr-110
3L	9905542	3L_9905542_SNP [dm3] 3L_9912442_SNP [dm6]	G	A	3.807e^-5	0.638	INTRON CG34356
2L	2601431	2L_2601431_SNP [dm3] 2L_2601431_SNP [dm6]	C	T	3.831e^-5	0.638	EXON CR44789
2R	2078345	2R_2078345_SNP [dm3] 2R_6190840_SNP [dm6]	A	G	3.831e^-5	0.638	UPSTREAM tRNA:N5:42Ae DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6519671	X_6519671_SNP [dm3] X_6625638_SNP [dm6]	G	A	3.854e^-5	0.638	INTRON pigs	TF binding site BDTNP1_TFBS_dl
3L	7515238	3L_7515238_SNP [dm3] 3L_7522138_SNP [dm6]	C	T	3.901e^-5	0.638	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6515111	3L_6515111_SNP [dm3] 3L_6522011_SNP [dm6]	G	A	3.938e^-5	0.638	INTRON sfl
3R	15628384	3R_15628384_SNP [dm3] 3R_19802662_SNP [dm6]	C	T	3.949e^-5	0.638	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17542269	3R_17542269_SNP [dm3] 3R_21716547_SNP [dm6]	C	T	3.995e^-5	0.638	INTRON CG31176
3L	15240887	3L_15240887_SNP [dm3] 3L_15247787_SNP [dm6]	A	C	4.016e^-5	0.638	INTERGENIC	TF binding site mE1_TFBS_sens
3R	15878282	3R_15878282_INS [dm3] 3R_20052560_INS [dm6]	T	TT	4.070e^-5	0.638	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2R	8519391	2R_8519391_SNP [dm3] 2R_12631886_SNP [dm6]	A	G	4.077e^-5	0.638	SPLICE_SITE_REGION muskelin UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19406049	2R_19406049_SNP [dm3] 2R_23518526_SNP [dm6]	G	A	4.096e^-5	0.638	INTERGENIC
3L	10246551	3L_10246551_SNP [dm3] 3L_10253451_SNP [dm6]	C	T	4.129e^-5	0.638	INTERGENIC
3L	16981203	3L_16981203_SNP [dm3] 3L_16988103_SNP [dm6]	A	T	4.130e^-5	0.638	INTRON Exn
3R	3057501	3R_3057501_SNP [dm3] 3R_7231779_SNP [dm6]	T	C	4.158e^-5	0.638	INTRON CG14608
2R	18605450	2R_18605450_SNP [dm3] 2R_22717945_SNP [dm6]	G	A	4.195e^-5	0.638	SYNONYMOUS_CODING jbug DOWNSTREAM CG30268	TF binding site mE1_TFBS_chinmo
2R	8518909	2R_8518909_SNP [dm3] 2R_12631404_SNP [dm6]	G	A	4.220e^-5	0.638	SYNONYMOUS_CODING muskelin	TF binding site mE1_TFBS_HSA
2R	8532447	2R_8532447_SNP [dm3] 2R_12644942_SNP [dm6]	A	T	4.220e^-5	0.638	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8519113	2R_8519113_SNP [dm3] 2R_12631608_SNP [dm6]	G	A	4.311e^-5	0.641	SPLICE_SITE_REGION muskelin INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	7723015	2L_7723015_SNP [dm3] 2L_7723015_SNP [dm6]	G	T	4.385e^-5	0.641	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
3R	17538241	3R_17538241_SNP [dm3] 3R_21712519_SNP [dm6]	G	T	4.430e^-5	0.641	INTRON CG31176
3L	6169613	3L_6169613_SNP [dm3] 3L_6176513_SNP [dm6]	G	A	4.447e^-5	0.641	SYNONYMOUS_CODING CG7376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12457437	X_12457437_SNP [dm3] X_12563404_SNP [dm6]	G	A	4.480e^-5	0.641	INTRON CG43921
X	6519878	X_6519878_SNP [dm3] X_6625845_SNP [dm6]	T	C	4.492e^-5	0.641	INTRON pigs
2L	20549502	2L_20549502_SNP [dm3] 2L_20549502_SNP [dm6]	T	G	4.504e^-5	0.641	INTERGENIC
2L	1817169	2L_1817169_SNP [dm3] 2L_1817169_SNP [dm6]	A	T	4.511e^-5	0.641	INTERGENIC
3R	10720649	3R_10720649_SNP [dm3] 3R_14894927_SNP [dm6]	G	A	4.636e^-5	0.642	SYNONYMOUS_CODING CG14860 UPSTREAM CG7265 DOWNSTREAM Nup93-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4656914	3L_4656914_INS [dm3] 3L_4656914_INS [dm6]	C	CACATCCGCACCGCACCTT...	4.666e^-5	0.642	INTRON axo
2L	3432822	2L_3432822_SNP [dm3] 2L_3432822_SNP [dm6]	C	T	4.683e^-5	0.642	INTERGENIC
3L	7490370	3L_7490370_SNP [dm3] 3L_7497270_SNP [dm6]	A	C	4.720e^-5	0.642	UTR_3_PRIME CG8539
3R	15628279	3R_15628279_SNP [dm3] 3R_19802557_SNP [dm6]	C	T	4.721e^-5	0.642	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2650689	3R_2650689_SNP [dm3] 3R_6824967_SNP [dm6]	C	T	4.727e^-5	0.642	UTR_3_PRIME Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	2078346	2R_2078346_SNP [dm3] 2R_6190841_SNP [dm6]	A	T	4.850e^-5	0.654	UPSTREAM tRNA:N5:42Ae DOWNSTREAM tRNA:N5:42Ad INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	17543959	3R_17543959_SNP [dm3] 3R_21718237_SNP [dm6]	T	A	4.882e^-5	0.654	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	7485113	3L_7485113_SNP [dm3] 3L_7492013_SNP [dm6]	G	A	4.952e^-5	0.656	SYNONYMOUS_CODING Cyp316a1
3R	24454846	3R_24454846_SNP [dm3] 3R_28629124_SNP [dm6]	A	G	4.968e^-5	0.656	INTRON CG10011
3R	7051188	3R_7051188_INS [dm3] 3R_11225466_INS [dm6]	A	AA	5.081e^-5	0.66	UPSTREAM scpr-C DOWNSTREAM RpL3 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15866648	3L_15866648_SNP [dm3] 3L_15873548_SNP [dm6]	G	C	5.104e^-5	0.66	INTRON pHCl
3R	17540735	3R_17540735_SNP [dm3] 3R_21715013_SNP [dm6]	A	G	5.127e^-5	0.66	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17543897	3R_17543897_SNP [dm3] 3R_21718175_SNP [dm6]	A	T	5.146e^-5	0.66	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	17499791	3L_17499791_SNP [dm3] 3L_17506691_SNP [dm6]	G	T	5.194e^-5	0.66	INTRON Oatp74D
3R	13169408	3R_13169408_SNP [dm3] 3R_17343686_SNP [dm6]	T	C	5.235e^-5	0.66	INTRON beat-IIa
3L	12345462	3L_12345462_SNP [dm3] 3L_12352362_SNP [dm6]	G	A	5.241e^-5	0.66	UPSTREAM CrzR INTERGENIC
X	3482717	X_3482717_SNP [dm3] X_3588684_SNP [dm6]	A	C	5.351e^-5	0.665	INTRON AstA-R1
2R	8528799	2R_8528799_SNP [dm3] 2R_12641294_SNP [dm6]	C	A	5.407e^-5	0.665	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19179557	X_19179557_SNP [dm3] X_19285524_SNP [dm6]	A	G	5.425e^-5	0.665	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_HSA
3R	17539870	3R_17539870_SNP [dm3] 3R_21714148_SNP [dm6]	T	C	5.430e^-5	0.665	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5390691	3L_5390691_SNP [dm3] 3L_5397591_SNP [dm6]	G	C	5.470e^-5	0.665	INTERGENIC
2L	7334919	2L_7334919_INS [dm3] 2L_7334919_INS [dm6]	A	AAA	5.517e^-5	0.665	UTR_5_PRIME Wnt6
3L	17196759	3L_17196759_SNP [dm3] 3L_17203659_SNP [dm6]	G	A	5.574e^-5	0.665	INTRON Rbp6
2R	2077200	2R_2077200_SNP [dm3] 2R_6189695_SNP [dm6]	C	T	5.600e^-5	0.665	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	4080641	2R_4080641_SNP [dm3] 2R_8193136_SNP [dm6]	T	C	5.616e^-5	0.665	INTRON LRP1
3R	17067009	3R_17067009_SNP [dm3] 3R_21241287_SNP [dm6]	T	A	5.642e^-5	0.665	INTERGENIC	regulatory region REDfly_CRMs
2R	17085211	2R_17085211_SNP [dm3] 2R_21197706_SNP [dm6]	G	T	5.714e^-5	0.667	SYNONYMOUS_CODING Lapsyn
2L	15126197	2L_15126197_SNP [dm3] 2L_15126197_SNP [dm6]	C	T	5.783e^-5	0.667	INTERGENIC
2L	9755922	2L_9755922_SNP [dm3] 2L_9755922_SNP [dm6]	G	A	5.860e^-5	0.667	INTERGENIC
2R	7119874	2R_7119874_SNP [dm3] 2R_11232369_SNP [dm6]	C	G	5.884e^-5	0.667	UTR_5_PRIME metro DOWNSTREAM CG13218	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	15880789	3R_15880789_SNP [dm3] 3R_20055067_SNP [dm6]	C	T	5.923e^-5	0.667	UPSTREAM CG17193 INTRON CG17193
3L	14768317	3L_14768317_SNP [dm3] 3L_14775217_SNP [dm6]	G	A	5.971e^-5	0.667	SYNONYMOUS_CODING mop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11930699	2R_11930699_SNP [dm3] 2R_16043194_SNP [dm6]	T	C	6.006e^-5	0.667	INTRON SP2353	TF binding site mE1_TFBS_cad
2L	18336443	2L_18336443_SNP [dm3] 2L_18336443_SNP [dm6]	C	G	6.026e^-5	0.667	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8519139	2R_8519139_SNP [dm3] 2R_12631634_SNP [dm6]	T	G	6.051e^-5	0.667	INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13024184	3L_13024184_SNP [dm3] 3L_13031084_SNP [dm6]	A	G	6.070e^-5	0.667	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	20877213	3L_20877213_SNP [dm3] 3L_20884113_SNP [dm6]	A	T	6.125e^-5	0.667	INTRON CG32432
3L	10398518	3L_10398518_SNP [dm3] 3L_10405418_SNP [dm6]	A	C	6.138e^-5	0.667	INTERGENIC
3R	2157972	3R_2157972_SNP [dm3] 3R_6332250_SNP [dm6]	T	A	6.176e^-5	0.667	DOWNSTREAM Osi18 INTERGENIC
2L	14018555	2L_14018555_SNP [dm3] 2L_14018555_SNP [dm6]	C	T	6.205e^-5	0.667	SYNONYMOUS_CODING bgm UPSTREAM CR44849 DOWNSTREAM NimC3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21455498	X_21455498_INS [dm3] X_21584471_INS [dm6]	A	ACAGT	6.279e^-5	0.667	DOWNSTREAM CR44711 EXON CR44711
2L	10919186	2L_10919186_SNP [dm3] 2L_10919186_SNP [dm6]	G	A	6.301e^-5	0.667	INTRON dpr2
3L	5366654	3L_5366654_DEL [dm3] 3L_5373554_DEL [dm6]	GCCTTAGTCTGTTTG...	G	6.329e^-5	0.667	INTERGENIC
2R	18931379	2R_18931379_SNP [dm3] 2R_23043856_SNP [dm6]	C	T	6.387e^-5	0.667	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20860451	X_20860451_SNP [dm3] X_20989424_SNP [dm6]	A	T	6.409e^-5	0.667	INTERGENIC
2L	4499623	2L_4499623_SNP [dm3] 2L_4499623_SNP [dm6]	C	T	6.448e^-5	0.667	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4499629	2L_4499629_SNP [dm3] 2L_4499629_SNP [dm6]	A	G	6.448e^-5	0.667	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14118817	2R_14118817_SNP [dm3] 2R_18231312_SNP [dm6]	A	T	6.464e^-5	0.667	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15878316	3R_15878316_SNP [dm3] 3R_20052594_SNP [dm6]	C	G	6.490e^-5	0.667	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	18355585	2L_18355585_SNP [dm3] 2L_18355585_SNP [dm6]	C	G	6.561e^-5	0.667	DOWNSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12704641	3L_12704641_SNP [dm3] 3L_12711541_SNP [dm6]	A	G	6.642e^-5	0.667	INTERGENIC
2R	11930711	2R_11930711_SNP [dm3] 2R_16043206_SNP [dm6]	G	A	6.700e^-5	0.667	INTRON SP2353	TF binding site mE1_TFBS_cad
2R	16817812	2R_16817812_SNP [dm3] 2R_20930307_SNP [dm6]	A	T	6.732e^-5	0.667	INTRON Rx
3R	15878291	3R_15878291_SNP [dm3] 3R_20052569_SNP [dm6]	A	G	6.770e^-5	0.667	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	5936816	2L_5936816_SNP [dm3] 2L_5936816_SNP [dm6]	C	T	6.814e^-5	0.667	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18359046	2L_18359046_SNP [dm3] 2L_18359046_SNP [dm6]	G	A	6.864e^-5	0.667	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da
3L	10651177	3L_10651177_SNP [dm3] 3L_10658077_SNP [dm6]	A	G	6.873e^-5	0.667	INTRON CG32066	TF binding site mE1_TFBS_Kr
3L	10389179	3L_10389179_SNP [dm3] 3L_10396079_SNP [dm6]	G	A	6.885e^-5	0.667	INTERGENIC
X	21291012	X_21291012_SNP [dm3] X_21419985_SNP [dm6]	C	A	6.919e^-5	0.667	INTERGENIC
3L	857424	3L_857424_SNP [dm3] 3L_857424_SNP [dm6]	A	G	6.940e^-5	0.667	UPSTREAM dpr20 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
X	21456435	X_21456435_SNP [dm3] X_21585408_SNP [dm6]	A	T	6.980e^-5	0.667	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	11813088	X_11813088_SNP [dm3] X_11919055_SNP [dm6]	A	G	7.000e^-5	0.667	UPSTREAM CR32661 DOWNSTREAM CR43157 & 2 others INTERGENIC
X	11813266	X_11813266_SNP [dm3] X_11919233_SNP [dm6]	T	A	7.016e^-5	0.667	UPSTREAM CR32661 DOWNSTREAM Sclp & 1 other EXON CR43157
2L	18322711	2L_18322711_DEL [dm3] 2L_18322711_DEL [dm6]	TGTAT	T	7.066e^-5	0.667	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6167141	3L_6167141_SNP [dm3] 3L_6174041_SNP [dm6]	T	A	7.089e^-5	0.667	UPSTREAM CG7376 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	25605548	3R_25605548_SNP [dm3] 3R_29779826_SNP [dm6]	C	A	7.119e^-5	0.667	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16681700	X_16681700_INS [dm3] X_16787667_INS [dm6]	A	AA	7.124e^-5	0.667	UPSTREAM Sap30 & 1 other INTRON Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	14056226	3R_14056226_SNP [dm3] 3R_18230504_SNP [dm6]	C	A	7.230e^-5	0.667	INTERGENIC	insulator Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14880901	2L_14880901_SNP [dm3] 2L_14880901_SNP [dm6]	T	G	7.467e^-5	0.667	INTRON Mst35Ba
X	7632892	X_7632892_SNP [dm3] X_7738859_SNP [dm6]	T	C	7.473e^-5	0.667	INTRON Tom40	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12448010	2R_12448010_SNP [dm3] 2R_16560505_SNP [dm6]	G	T	7.482e^-5	0.667	SYNONYMOUS_CODING DAT
3L	5274323	3L_5274323_SNP [dm3] 3L_5281223_SNP [dm6]	T	C	7.506e^-5	0.667	INTERGENIC
2L	14036743	2L_14036743_SNP [dm3] 2L_14036743_SNP [dm6]	A	G	7.518e^-5	0.667	EXON CR45284
2R	7118993	2R_7118993_SNP [dm3] 2R_11231488_SNP [dm6]	G	A	7.524e^-5	0.667	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7118994	2R_7118994_SNP [dm3] 2R_11231489_SNP [dm6]	T	C	7.524e^-5	0.667	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15880780	3R_15880780_SNP [dm3] 3R_20055058_SNP [dm6]	T	G	7.533e^-5	0.667	UPSTREAM CG17193 INTRON CG17193
X	2249358	X_2249358_SNP [dm3] X_2355325_SNP [dm6]	A	G	7.593e^-5	0.667	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	10720833	3R_10720833_SNP [dm3] 3R_14895111_SNP [dm6]	A	G	7.596e^-5	0.667	DOWNSTREAM Nup93-2 INTRON CG14860	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16817818	2R_16817818_SNP [dm3] 2R_20930313_SNP [dm6]	G	A	7.701e^-5	0.667	INTRON Rx
2L	1616191	2L_1616191_INS [dm3] 2L_1616191_INS [dm6]	G	GTCCTTCGCAG...	7.702e^-5	0.667	INTERGENIC
3R	13894369	3R_13894369_SNP [dm3] 3R_18068647_SNP [dm6]	C	G	7.715e^-5	0.667	INTERGENIC
3L	18849800	3L_18849800_SNP [dm3] 3L_18856700_SNP [dm6]	A	C	7.716e^-5	0.667	UPSTREAM CR45388 INTERGENIC
3R	16782955	3R_16782955_SNP [dm3] 3R_20957233_SNP [dm6]	T	G	7.893e^-5	0.667	UPSTREAM Atpalpha INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6166837	3L_6166837_SNP [dm3] 3L_6173737_SNP [dm6]	G	T	7.895e^-5	0.667	UPSTREAM CG7376 INTRON CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	19324063	3R_19324063_SNP [dm3] 3R_23498341_SNP [dm6]	A	T	7.901e^-5	0.667	INTERGENIC
2L	3897837	2L_3897837_SNP [dm3] 2L_3897837_SNP [dm6]	T	G	7.931e^-5	0.667	INTRON capu
X	16774402	X_16774402_SNP [dm3] X_16880369_SNP [dm6]	A	T	7.966e^-5	0.667	UPSTREAM CG4872 INTERGENIC
3L	7479427	3L_7479427_SNP [dm3] 3L_7486327_SNP [dm6]	C	T	7.969e^-5	0.667	SYNONYMOUS_CODING mthl6
3R	17541420	3R_17541420_SNP [dm3] 3R_21715698_SNP [dm6]	C	T	7.986e^-5	0.667	INTRON CG31176
3L	18172176	3L_18172176_SNP [dm3] 3L_18179076_SNP [dm6]	C	T	8.070e^-5	0.667	INTRON W
3R	9667355	3R_9667355_SNP [dm3] 3R_13841633_SNP [dm6]	C	T	8.087e^-5	0.667	INTERGENIC
3L	10651153	3L_10651153_DEL [dm3] 3L_10658053_DEL [dm6]	ATATGCTCC	A	8.097e^-5	0.667	INTRON CG32066	TF binding site mE1_TFBS_Kr
2L	4087556	2L_4087556_DEL [dm3] 2L_4087556_DEL [dm6]	AA	A	8.170e^-5	0.667	INTRON ed
3L	6164925	3L_6164925_SNP [dm3] 3L_6171825_SNP [dm6]	G	A	8.176e^-5	0.667	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7118996	2R_7118996_SNP [dm3] 2R_11231491_SNP [dm6]	T	A	8.197e^-5	0.667	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7119001	2R_7119001_SNP [dm3] 2R_11231496_SNP [dm6]	A	C	8.197e^-5	0.667	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15866312	3L_15866312_SNP [dm3] 3L_15873212_SNP [dm6]	C	A	8.241e^-5	0.667	INTRON pHCl
3L	15866422	3L_15866422_SNP [dm3] 3L_15873322_SNP [dm6]	C	T	8.241e^-5	0.667	INTRON pHCl
2L	6479567	2L_6479567_SNP [dm3] 2L_6479567_SNP [dm6]	G	A	8.254e^-5	0.667	INTRON Sec61alpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16774345	X_16774345_SNP [dm3] X_16880312_SNP [dm6]	C	T	8.348e^-5	0.668	INTERGENIC
3R	10720651	3R_10720651_SNP [dm3] 3R_14894929_SNP [dm6]	T	A	8.381e^-5	0.668	NON_SYNONYMOUS_CODING CG14860 UPSTREAM CG7265 DOWNSTREAM Nup93-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1817174	2L_1817174_SNP [dm3] 2L_1817174_SNP [dm6]	A	C	8.538e^-5	0.668	INTERGENIC
3R	15880421	3R_15880421_INS [dm3] 3R_20054699_INS [dm6]	A	AATTTAATGAATA...	8.553e^-5	0.668	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10397188	3L_10397188_SNP [dm3] 3L_10404088_SNP [dm6]	G	A	8.586e^-5	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17469341	2R_17469341_SNP [dm3] 2R_21581836_SNP [dm6]	C	A	8.593e^-5	0.668	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6753598	3L_6753598_SNP [dm3] 3L_6760498_SNP [dm6]	A	C	8.676e^-5	0.668	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10398309	3L_10398309_DEL [dm3] 3L_10405209_DEL [dm6]	CGTTCCC	C	8.762e^-5	0.668	INTERGENIC
2L	18265081	2L_18265081_SNP [dm3] 2L_18265081_SNP [dm6]	T	C	8.771e^-5	0.668	INTRON CG42750
3R	10720993	3R_10720993_SNP [dm3] 3R_14895271_SNP [dm6]	C	A	8.797e^-5	0.668	NON_SYNONYMOUS_CODING CG14860 DOWNSTREAM Nup93-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6149697	X_6149697_SNP [dm3] X_6255664_SNP [dm6]	T	G	8.806e^-5	0.668	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16681730	X_16681730_SNP [dm3] X_16787697_SNP [dm6]	C	A	8.822e^-5	0.668	START_GAINED Sap30 UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17548104	3R_17548104_SNP [dm3] 3R_21722382_SNP [dm6]	G	A	8.889e^-5	0.668	INTRON CR44096	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
2L	18771575	2L_18771575_SNP [dm3] 2L_18771575_SNP [dm6]	T	A	8.981e^-5	0.668	INTRON ham
3R	13780986	3R_13780986_DEL [dm3] 3R_17955264_DEL [dm6]	TT	T	9.165e^-5	0.668	INTRON cpo	TF binding site mE1_TFBS_cad
3L	7002855	3L_7002855_SNP [dm3] 3L_7009755_SNP [dm6]	G	T	9.186e^-5	0.668	INTRON Mp
2L	14036752	2L_14036752_INS [dm3] 2L_14036752_INS [dm6]	A	AATTGCCCAA	9.226e^-5	0.668	EXON CR45284
2L	19385324	2L_19385324_SNP [dm3] 2L_19385324_SNP [dm6]	G	A	9.233e^-5	0.668	SYNONYMOUS_CODING fon
3L	8546074	3L_8546074_SNP [dm3] 3L_8552974_SNP [dm6]	G	C	9.248e^-5	0.668	INTRON rhea
3L	10398230	3L_10398230_SNP [dm3] 3L_10405130_SNP [dm6]	C	G	9.289e^-5	0.668	INTERGENIC
3L	15159079	3L_15159079_INS [dm3] 3L_15165979_INS [dm6]	A	CT	9.328e^-5	0.668	INTERGENIC
3R	16782988	3R_16782988_SNP [dm3] 3R_20957266_SNP [dm6]	G	A	9.373e^-5	0.668	UPSTREAM Atpalpha INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7259568	3L_7259568_SNP [dm3] 3L_7266468_SNP [dm6]	A	G	9.389e^-5	0.668	UTR_3_PRIME unc-13-4A
3R	13590459	3R_13590459_SNP [dm3] 3R_17764737_SNP [dm6]	T	C	9.414e^-5	0.668	INTERGENIC
X	6332697	X_6332697_SNP [dm3] X_6438664_SNP [dm6]	A	G	9.517e^-5	0.668	INTRON CG42340
X	18777708	X_18777708_SNP [dm3] X_18883675_SNP [dm6]	A	G	9.538e^-5	0.668	UTR_3_PRIME CG34401 UPSTREAM CG7332	TF binding site mE1_TFBS_HSA
2L	18347633	2L_18347633_SNP [dm3] 2L_18347633_SNP [dm6]	A	G	9.600e^-5	0.668	INTRON Fas3
3R	3025052	3R_3025052_SNP [dm3] 3R_7199330_SNP [dm6]	T	A	9.612e^-5	0.668	UTR_3_PRIME lap DOWNSTREAM lap	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	13159898	3L_13159898_SNP [dm3] 3L_13166798_SNP [dm6]	T	A	9.644e^-5	0.668	INTERGENIC
2L	14273213	2L_14273213_SNP [dm3] 2L_14273213_SNP [dm6]	T	C	9.686e^-5	0.668	DOWNSTREAM CR44729 INTRON wb
3L	8823885	3L_8823885_SNP [dm3] 3L_8830785_SNP [dm6]	G	T	9.702e^-5	0.668	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8519122	2R_8519122_SNP [dm3] 2R_12631617_SNP [dm6]	A	T	9.718e^-5	0.668	INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14939675	2L_14939675_DEL [dm3] 2L_14939675_DEL [dm6]	ACACCCACTTTCA...	A	9.732e^-5	0.668	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	17521426	3L_17521426_SNP [dm3] 3L_17528326_SNP [dm6]	C	T	9.747e^-5	0.668	SYNONYMOUS_CODING Edc3 DOWNSTREAM snoRNA:Edc3-a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10398407	3L_10398407_SNP [dm3] 3L_10405307_SNP [dm6]	C	A	9.786e^-5	0.668	INTERGENIC
3L	9263705	3L_9263705_SNP [dm3] 3L_9270605_SNP [dm6]	C	T	9.933e^-5	0.668	INTRON GluRIB
2L	20517090	2L_20517090_SNP [dm3] 2L_20517090_SNP [dm6]	C	T	9.958e^-5	0.668	INTERGENIC
3R	19304609	3R_19304609_SNP [dm3] 3R_23478887_SNP [dm6]	C	T	9.980e^-5	0.668	INTERGENIC
3L	3254772	3L_3254772_SNP [dm3] 3L_3254772_SNP [dm6]	T	A	1.003e^-4	0.668	DOWNSTREAM CR43626 INTERGENIC
2L	18461044	2L_18461044_SNP [dm3] 2L_18461044_SNP [dm6]	G	T	1.003e^-4	0.668	INTRON let-7-C
2R	7107111	2R_7107111_SNP [dm3] 2R_11219606_SNP [dm6]	T	A	1.003e^-4	0.668	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	4397999	2R_4397999_SNP [dm3] 2R_8510494_SNP [dm6]	A	G	1.012e^-4	0.668	INTRON mtt
2L	15980108	2L_15980108_SNP [dm3] 2L_15980108_SNP [dm6]	T	G	1.024e^-4	0.668	SYNONYMOUS_CODING CG10839
2L	2287990	2L_2287990_SNP [dm3] 2L_2287990_SNP [dm6]	A	G	1.040e^-4	0.668	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3L	7479424	3L_7479424_SNP [dm3] 3L_7486324_SNP [dm6]	T	C	1.050e^-4	0.668	SYNONYMOUS_CODING mthl6
3L	6027894	3L_6027894_SNP [dm3] 3L_6034794_SNP [dm6]	T	G	1.053e^-4	0.668	UPSTREAM yip7 & 1 other INTERGENIC
X	3728766	X_3728766_SNP [dm3] X_3834733_SNP [dm6]	G	A	1.059e^-4	0.668	INTRON ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17132168	X_17132168_SNP [dm3] X_17238135_SNP [dm6]	C	T	1.064e^-4	0.668	INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18849807	3L_18849807_SNP [dm3] 3L_18856707_SNP [dm6]	A	G	1.068e^-4	0.668	UPSTREAM CR45388 INTERGENIC
3R	19304598	3R_19304598_SNP [dm3] 3R_23478876_SNP [dm6]	A	G	1.070e^-4	0.668	INTERGENIC
2R	16931180	2R_16931180_SNP [dm3] 2R_21043675_SNP [dm6]	A	T	1.076e^-4	0.668	INTERGENIC
3L	15863160	3L_15863160_SNP [dm3] 3L_15870060_SNP [dm6]	C	T	1.082e^-4	0.668	SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad
3L	7002851	3L_7002851_SNP [dm3] 3L_7009751_SNP [dm6]	C	T	1.084e^-4	0.668	INTRON Mp
2R	4080633	2R_4080633_SNP [dm3] 2R_8193128_SNP [dm6]	A	T	1.092e^-4	0.668	INTRON LRP1
3R	24453163	3R_24453163_SNP [dm3] 3R_28627441_SNP [dm6]	A	G	1.093e^-4	0.668	INTRON CG10011
3R	8974772	3R_8974772_SNP [dm3] 3R_13149050_SNP [dm6]	A	T	1.098e^-4	0.668	INTRON timeout & 2 others
3L	7491826	3L_7491826_SNP [dm3] 3L_7498726_SNP [dm6]	A	G	1.100e^-4	0.668	UTR_5_PRIME CG8539 UPSTREAM CG8539	TF binding site BDTNP1_TFBS_twi
2L	18403664	2L_18403664_DEL [dm3] 2L_18403664_DEL [dm6]	TC	T	1.100e^-4	0.668	UPSTREAM CR44487 INTERGENIC
3R	15877936	3R_15877936_SNP [dm3] 3R_20052214_SNP [dm6]	A	G	1.106e^-4	0.668	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	2249278	X_2249278_SNP [dm3] X_2355245_SNP [dm6]	A	C	1.112e^-4	0.668	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	13458320	3R_13458320_SNP [dm3] 3R_17632598_SNP [dm6]	G	A	1.115e^-4	0.668	DOWNSTREAM tRNA:CR31573 INTRON CG43175
2L	12330189	2L_12330189_SNP [dm3] 2L_12330189_SNP [dm6]	A	T	1.117e^-4	0.668	INTERGENIC
3L	6160570	3L_6160570_SNP [dm3] 3L_6167470_SNP [dm6]	T	A	1.118e^-4	0.668	UTR_3_PRIME CG10289
2L	7722939	2L_7722939_SNP [dm3] 2L_7722939_SNP [dm6]	T	C	1.118e^-4	0.668	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
3L	15752413	3L_15752413_SNP [dm3] 3L_15759313_SNP [dm6]	A	G	1.121e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	2601621	2L_2601621_SNP [dm3] 2L_2601621_SNP [dm6]	C	T	1.126e^-4	0.668	EXON CR44789
3L	17458369	3L_17458369_SNP [dm3] 3L_17465269_SNP [dm6]	G	A	1.128e^-4	0.668	UPSTREAM CG7603 INTERGENIC
3L	21036462	3L_21036462_SNP [dm3] 3L_21043362_SNP [dm6]	G	A	1.135e^-4	0.668	INTRON siz
3R	15880635	3R_15880635_SNP [dm3] 3R_20054913_SNP [dm6]	C	T	1.137e^-4	0.668	UPSTREAM CG17193 INTRON CG17193
3L	10246552	3L_10246552_SNP [dm3] 3L_10253452_SNP [dm6]	T	C	1.138e^-4	0.668	INTERGENIC
2R	7119002	2R_7119002_SNP [dm3] 2R_11231497_SNP [dm6]	G	C	1.140e^-4	0.668	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17072740	2L_17072740_SNP [dm3] 2L_17072740_SNP [dm6]	G	T	1.142e^-4	0.668	INTERGENIC
3L	11803058	3L_11803058_SNP [dm3] 3L_11809958_SNP [dm6]	C	T	1.143e^-4	0.668	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad
2L	14698193	2L_14698193_SNP [dm3] 2L_14698193_SNP [dm6]	A	C	1.145e^-4	0.668	INTERGENIC
2R	3887517	2R_3887517_DEL [dm3] 2R_8000012_DEL [dm6]	TGTCACCC	T	1.147e^-4	0.668	DOWNSTREAM CG11191 INTERGENIC
3R	26199789	3R_26199789_SNP [dm3] 3R_30374067_SNP [dm6]	C	G	1.148e^-4	0.668	INTERGENIC
2L	20501123	2L_20501123_SNP [dm3] 2L_20501123_SNP [dm6]	C	T	1.165e^-4	0.668	INTERGENIC
2L	4499958	2L_4499958_SNP [dm3] 2L_4499958_SNP [dm6]	A	G	1.166e^-4	0.668	NON_SYNONYMOUS_CODING dp SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	3160261	3R_3160261_SNP [dm3] 3R_7334539_SNP [dm6]	G	C	1.167e^-4	0.668	INTERGENIC
X	15557467	X_15557467_SNP [dm3] X_15663434_SNP [dm6]	G	A	1.170e^-4	0.668	DOWNSTREAM CG8119 EXON CR43299
3L	6238882	3L_6238882_SNP [dm3] 3L_6245782_SNP [dm6]	T	A	1.173e^-4	0.668	UPSTREAM Mdr65 DOWNSTREAM Best2 INTERGENIC
3R	13795169	3R_13795169_SNP [dm3] 3R_17969447_SNP [dm6]	G	T	1.173e^-4	0.668	INTRON cpo
2L	12101002	2L_12101002_SNP [dm3] 2L_12101002_SNP [dm6]	A	T	1.179e^-4	0.668	UTR_3_PRIME Patsas DOWNSTREAM Ced-12
3R	13169494	3R_13169494_SNP [dm3] 3R_17343772_SNP [dm6]	T	A	1.180e^-4	0.668	INTRON beat-IIa
2R	15556064	2R_15556064_SNP [dm3] 2R_19668559_SNP [dm6]	G	A	1.183e^-4	0.668	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	7002916	3L_7002916_SNP [dm3] 3L_7009816_SNP [dm6]	T	A	1.184e^-4	0.668	INTRON Mp
2R	7412905	2R_7412905_SNP [dm3] 2R_11525400_SNP [dm6]	C	A	1.187e^-4	0.668	INTRON en	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20593915	3R_20593915_SNP [dm3] 3R_24768193_SNP [dm6]	A	G	1.188e^-4	0.668	EXON CR45650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	7118976	2R_7118976_SNP [dm3] 2R_11231471_SNP [dm6]	G	A	1.188e^-4	0.668	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10070545	2L_10070545_SNP [dm3] 2L_10070545_SNP [dm6]	C	G	1.195e^-4	0.668	INTRON CG44153
3R	1776038	3R_1776038_SNP [dm3] 3R_5950316_SNP [dm6]	C	T	1.196e^-4	0.668	INTRON CG34113
3L	4155017	3L_4155017_SNP [dm3] 3L_4155017_SNP [dm6]	T	G	1.197e^-4	0.668	INTRON nab	TF binding site mE1_TFBS_cad
2L	2420110	2L_2420110_SNP [dm3] 2L_2420110_SNP [dm6]	T	C	1.199e^-4	0.668	UPSTREAM CG34447 & 1 other INTERGENIC
3L	9231451	3L_9231451_SNP [dm3] 3L_9238351_SNP [dm6]	C	A	1.203e^-4	0.668	INTERGENIC
2L	12886853	2L_12886853_INS [dm3] 2L_12886853_INS [dm6]	A	ATGC	1.204e^-4	0.668	INTERGENIC
2R	17469801	2R_17469801_SNP [dm3] 2R_21582296_SNP [dm6]	G	A	1.205e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6149679	X_6149679_SNP [dm3] X_6255646_SNP [dm6]	A	G	1.205e^-4	0.668	UPSTREAM Spx & 1 other INTERGENIC
2L	18483081	2L_18483081_SNP [dm3] 2L_18483081_SNP [dm6]	A	G	1.206e^-4	0.668	INTRON CG10283
2L	19390513	2L_19390513_SNP [dm3] 2L_19390513_SNP [dm6]	C	T	1.207e^-4	0.668	UTR_3_PRIME CG17544 UPSTREAM CG17549
2L	1287406	2L_1287406_SNP [dm3] 2L_1287406_SNP [dm6]	G	T	1.207e^-4	0.668	INTRON robo3
X	12634364	X_12634364_SNP [dm3] X_12740331_SNP [dm6]	T	C	1.215e^-4	0.668	INTRON Smr
3L	8726556	3L_8726556_INS [dm3] 3L_8733456_INS [dm6]	A	TG	1.218e^-4	0.668	UTR_3_PRIME Prm DOWNSTREAM Cp16	TF binding site mE1_TFBS_chinmo
2R	7077543	2R_7077543_SNP [dm3] 2R_11190038_SNP [dm6]	A	G	1.219e^-4	0.668	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8519388	2R_8519388_SNP [dm3] 2R_12631883_SNP [dm6]	A	G	1.219e^-4	0.668	SPLICE_SITE_REGION muskelin UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13169517	3R_13169517_SNP [dm3] 3R_17343795_SNP [dm6]	C	T	1.223e^-4	0.668	INTRON beat-IIa
3L	5568640	3L_5568640_SNP [dm3] 3L_5575540_SNP [dm6]	G	A	1.227e^-4	0.668	UPSTREAM Msr-110 INTRON Msr-110
X	10479869	X_10479869_SNP [dm3] X_10585836_SNP [dm6]	T	C	1.232e^-4	0.668	UPSTREAM spri INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6042993	3R_6042993_SNP [dm3] 3R_10217271_SNP [dm6]	T	C	1.236e^-4	0.668	INTRON Syn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	11418408	3R_11418408_SNP [dm3] 3R_15592686_SNP [dm6]	C	A	1.238e^-4	0.668	INTERGENIC
2R	8532357	2R_8532357_SNP [dm3] 2R_12644852_SNP [dm6]	A	C	1.241e^-4	0.668	INTRON CG8785	TF binding site mE1_TFBS_cad
2R	7556075	2R_7556075_SNP [dm3] 2R_11668570_SNP [dm6]	G	A	1.251e^-4	0.668	UTR_5_PRIME Tret1-1 INTRON Roc2
3L	2114605	3L_2114605_SNP [dm3] 3L_2114605_SNP [dm6]	G	A	1.255e^-4	0.668	INTRON sls
2L	18373606	2L_18373606_SNP [dm3] 2L_18373606_SNP [dm6]	A	T	1.257e^-4	0.668	INTRON Fas3
2L	18483110	2L_18483110_SNP [dm3] 2L_18483110_SNP [dm6]	T	C	1.266e^-4	0.668	INTRON CG10283
3L	10651203	3L_10651203_SNP [dm3] 3L_10658103_SNP [dm6]	A	T	1.276e^-4	0.668	INTRON CG32066	TF binding site mE1_TFBS_Kr
2L	4087396	2L_4087396_SNP [dm3] 2L_4087396_SNP [dm6]	T	C	1.276e^-4	0.668	INTRON ed
3L	10723284	3L_10723284_SNP [dm3] 3L_10730184_SNP [dm6]	A	T	1.276e^-4	0.668	INTERGENIC
2L	18354999	2L_18354999_SNP [dm3] 2L_18354999_SNP [dm6]	C	A	1.276e^-4	0.668	INTRON Fas3	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	3409266	3L_3409266_DEL [dm3] 3L_3409266_DEL [dm6]	TGT	T	1.278e^-4	0.668	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20444823	X_20444823_SNP [dm3] X_20573796_SNP [dm6]	G	C	1.283e^-4	0.668	UPSTREAM CG42580 INTERGENIC
X	17206141	X_17206141_SNP [dm3] X_17312108_SNP [dm6]	T	C	1.289e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7118935	2R_7118935_SNP [dm3] 2R_11231430_SNP [dm6]	A	G	1.293e^-4	0.668	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11137956	3L_11137956_SNP [dm3] 3L_11144856_SNP [dm6]	G	A	1.305e^-4	0.668	INTRON CG32082
2R	8515481	2R_8515481_SNP [dm3] 2R_12627976_SNP [dm6]	T	A	1.311e^-4	0.668	SYNONYMOUS_CODING CG17760 DOWNSTREAM muskelin
2L	2265654	2L_2265654_SNP [dm3] 2L_2265654_SNP [dm6]	C	T	1.313e^-4	0.668	UPSTREAM CG34049 INTERGENIC
3R	15880753	3R_15880753_SNP [dm3] 3R_20055031_SNP [dm6]	A	G	1.316e^-4	0.668	UPSTREAM CG17193 INTRON CG17193
X	21511027	X_21511027_INS [dm3] X_21640000_INS [dm6]	G	GAGT	1.322e^-4	0.668	INTERGENIC
2R	2112155	2R_2112155_SNP [dm3] 2R_6224650_SNP [dm6]	T	G	1.327e^-4	0.668	UPSTREAM tomboy40 INTRON bin3
X	6149560	X_6149560_SNP [dm3] X_6255527_SNP [dm6]	G	A	1.331e^-4	0.668	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24453162	3R_24453162_SNP [dm3] 3R_28627440_SNP [dm6]	A	G	1.333e^-4	0.668	INTRON CG10011
2R	8519104	2R_8519104_SNP [dm3] 2R_12631599_SNP [dm6]	T	C	1.335e^-4	0.668	SYNONYMOUS_CODING muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	21456426	X_21456426_SNP [dm3] X_21585399_SNP [dm6]	C	G	1.336e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3L	15703328	3L_15703328_SNP [dm3] 3L_15710228_SNP [dm6]	A	G	1.341e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13725390	2R_13725390_SNP [dm3] 2R_17837885_SNP [dm6]	G	A	1.346e^-4	0.668	INTRON grh	TF binding site BDTNP1_TFBS_da
3L	3484529	3L_3484529_SNP [dm3] 3L_3484529_SNP [dm6]	G	A	1.351e^-4	0.668	INTRON CG42324 & 1 other
3L	3484534	3L_3484534_SNP [dm3] 3L_3484534_SNP [dm6]	T	A	1.351e^-4	0.668	INTRON CG42324 & 1 other
2L	18347573	2L_18347573_SNP [dm3] 2L_18347573_SNP [dm6]	G	C	1.351e^-4	0.668	INTRON Fas3
3R	7057377	3R_7057377_SNP [dm3] 3R_11231655_SNP [dm6]	A	G	1.352e^-4	0.668	SYNONYMOUS_CODING CG17187 UPSTREAM CG14701 DOWNSTREAM Arfip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24431612	3R_24431612_SNP [dm3] 3R_28605890_SNP [dm6]	C	T	1.353e^-4	0.668	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20550184	2L_20550184_SNP [dm3] 2L_20550184_SNP [dm6]	G	T	1.355e^-4	0.668	INTERGENIC
3R	13169492	3R_13169492_SNP [dm3] 3R_17343770_SNP [dm6]	G	A	1.358e^-4	0.668	INTRON beat-IIa
2L	19424388	2L_19424388_SNP [dm3] 2L_19424388_SNP [dm6]	G	C	1.363e^-4	0.668	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2175290	3L_2175290_SNP [dm3] 3L_2175290_SNP [dm6]	G	A	1.366e^-4	0.668	UPSTREAM CG15820 INTERGENIC
3L	16406581	3L_16406581_SNP [dm3] 3L_16413481_SNP [dm6]	T	G	1.368e^-4	0.668	SYNONYMOUS_CODING TMS1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15864783	3L_15864783_SNP [dm3] 3L_15871683_SNP [dm6]	C	G	1.372e^-4	0.668	INTRON pHCl
3L	6167193	3L_6167193_SNP [dm3] 3L_6174093_SNP [dm6]	C	T	1.376e^-4	0.668	UPSTREAM CG7376 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	10233857	3L_10233857_SNP [dm3] 3L_10240757_SNP [dm6]	A	G	1.377e^-4	0.668	DOWNSTREAM CR45403 INTERGENIC
3L	10814263	3L_10814263_SNP [dm3] 3L_10821163_SNP [dm6]	C	A	1.397e^-4	0.668	INTERGENIC
3R	21784955	3R_21784955_SNP [dm3] 3R_25959233_SNP [dm6]	G	T	1.399e^-4	0.668	UPSTREAM CG14540 INTERGENIC
2R	7078041	2R_7078041_SNP [dm3] 2R_11190536_SNP [dm6]	G	T	1.400e^-4	0.668	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20510806	2R_20510806_SNP [dm3] 2R_24623283_SNP [dm6]	A	C	1.401e^-4	0.668	INTRON CG13594
3R	3006628	3R_3006628_SNP [dm3] 3R_7180906_SNP [dm6]	C	G	1.403e^-4	0.668	SYNONYMOUS_CODING sas INTRON sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24170799	3R_24170799_SNP [dm3] 3R_28345077_SNP [dm6]	C	T	1.407e^-4	0.668	UTR_3_PRIME Moca-cyp	TF binding site mE1_TFBS_cad
3R	1073945	3R_1073945_SNP [dm3] 3R_5248223_SNP [dm6]	A	G	1.413e^-4	0.668	INTRON CG12163
2L	8755202	2L_8755202_SNP [dm3] 2L_8755202_SNP [dm6]	C	T	1.416e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	572765	2L_572765_SNP [dm3] 2L_572765_SNP [dm6]	C	T	1.418e^-4	0.668	UTR_3_PRIME CG2807 DOWNSTREAM Ipk2 & 1 other
2L	12111720	2L_12111720_SNP [dm3] 2L_12111720_SNP [dm6]	T	A	1.418e^-4	0.668	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
3L	8408266	3L_8408266_SNP [dm3] 3L_8415166_SNP [dm6]	A	C	1.418e^-4	0.668	SYNONYMOUS_CODING Exo70 DOWNSTREAM CG32354
3R	27025394	3R_27025394_SNP [dm3] 3R_31199672_SNP [dm6]	C	T	1.421e^-4	0.668	INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8532352	2R_8532352_SNP [dm3] 2R_12644847_SNP [dm6]	C	T	1.431e^-4	0.668	INTRON CG8785	TF binding site mE1_TFBS_cad
2L	5560606	2L_5560606_INS [dm3] 2L_5560606_INS [dm6]	T	TTTCTAA	1.433e^-4	0.668	INTRON GluRIIB
X	6149689	X_6149689_SNP [dm3] X_6255656_SNP [dm6]	G	C	1.436e^-4	0.668	UPSTREAM Spx & 1 other INTERGENIC
2R	8519456	2R_8519456_SNP [dm3] 2R_12631951_SNP [dm6]	A	T	1.442e^-4	0.668	UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	12404201	X_12404201_DEL [dm3] X_12510168_DEL [dm6]	TACGCTTTTATTAGC...	T	1.442e^-4	0.668	INTRON CG2556
2L	1287401	2L_1287401_SNP [dm3] 2L_1287401_SNP [dm6]	A	T	1.445e^-4	0.668	INTRON robo3
2L	18541010	2L_18541010_SNP [dm3] 2L_18541010_SNP [dm6]	G	A	1.448e^-4	0.668	INTRON Pde11
3R	5915031	3R_5915031_SNP [dm3] 3R_10089309_SNP [dm6]	T	G	1.450e^-4	0.668	EXON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9454607	2R_9454607_SNP [dm3] 2R_13567102_SNP [dm6]	C	T	1.450e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
X	21456420	X_21456420_SNP [dm3] X_21585393_SNP [dm6]	A	T	1.456e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2R	7119013	2R_7119013_SNP [dm3] 2R_11231508_SNP [dm6]	C	G	1.467e^-4	0.668	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17458393	3L_17458393_SNP [dm3] 3L_17465293_SNP [dm6]	C	T	1.467e^-4	0.668	UPSTREAM CG7603 INTERGENIC
2L	17784836	2L_17784836_SNP [dm3] 2L_17784836_SNP [dm6]	G	C	1.468e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17784863	2L_17784863_SNP [dm3] 2L_17784863_SNP [dm6]	A	T	1.468e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	2416362	2R_2416362_SNP [dm3] 2R_6528857_SNP [dm6]	G	A	1.469e^-4	0.668	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	14523365	X_14523365_SNP [dm3] X_14629332_SNP [dm6]	C	T	1.471e^-4	0.668	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12784541	3R_12784541_SNP [dm3] 3R_16958819_SNP [dm6]	T	G	1.472e^-4	0.668	INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6722250	3R_6722250_SNP [dm3] 3R_10896528_SNP [dm6]	C	T	1.472e^-4	0.668	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	15866878	3L_15866878_INS [dm3] 3L_15873778_INS [dm6]	T	TGAT	1.477e^-4	0.668	INTRON pHCl
2L	2602056	2L_2602056_SNP [dm3] 2L_2602056_SNP [dm6]	G	C	1.477e^-4	0.668	UPSTREAM CR44789 INTERGENIC
2R	8530037	2R_8530037_SNP [dm3] 2R_12642532_SNP [dm6]	C	A	1.486e^-4	0.668	INTRON CG8785
3L	6877202	3L_6877202_SNP [dm3] 3L_6884102_SNP [dm6]	G	A	1.492e^-4	0.668	UPSTREAM CR45416 INTERGENIC
2R	8519144	2R_8519144_SNP [dm3] 2R_12631639_SNP [dm6]	C	G	1.493e^-4	0.668	INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3661576	2L_3661576_SNP [dm3] 2L_3661576_SNP [dm6]	A	T	1.495e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2118155	2R_2118155_SNP [dm3] 2R_6230650_SNP [dm6]	G	A	1.498e^-4	0.668	INTRON bin3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20550285	2L_20550285_SNP [dm3] 2L_20550285_SNP [dm6]	G	A	1.498e^-4	0.668	INTERGENIC
3L	9987283	3L_9987283_SNP [dm3] 3L_9994183_SNP [dm6]	T	C	1.511e^-4	0.668	INTRON dpr6
3L	10651208	3L_10651208_SNP [dm3] 3L_10658108_SNP [dm6]	A	G	1.514e^-4	0.668	INTRON CG32066	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2L	16397124	2L_16397124_SNP [dm3] 2L_16397124_SNP [dm6]	G	T	1.517e^-4	0.668	INTERGENIC
2L	18478423	2L_18478423_SNP [dm3] 2L_18478423_SNP [dm6]	G	A	1.521e^-4	0.668	INTRON CG10283
3R	17539723	3R_17539723_SNP [dm3] 3R_21714001_SNP [dm6]	G	A	1.530e^-4	0.668	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3885605	2L_3885605_DEL [dm3] 2L_3885605_DEL [dm6]	GAG	G	1.531e^-4	0.668	INTRON capu	TF binding site mE1_TFBS_bab1
2R	8532349	2R_8532349_SNP [dm3] 2R_12644844_SNP [dm6]	T	C	1.536e^-4	0.668	INTRON CG8785	TF binding site mE1_TFBS_cad
2L	12414124	2L_12414124_SNP [dm3] 2L_12414124_SNP [dm6]	T	A	1.536e^-4	0.668	INTRON vir-1
2L	5691558	2L_5691558_SNP [dm3] 2L_5691558_SNP [dm6]	T	A	1.536e^-4	0.668	UPSTREAM CR44820 EXON CR44819	TF binding site mE1_TFBS_cad
3L	18066946	3L_18066946_SNP [dm3] 3L_18073846_SNP [dm6]	G	A	1.539e^-4	0.668	START_GAINED CG44004 UTR_5_PRIME CG44004 DOWNSTREAM CR45391
2L	6955284	2L_6955284_SNP [dm3] 2L_6955284_SNP [dm6]	T	C	1.546e^-4	0.668	SYNONYMOUS_CODING CG13775 DOWNSTREAM SA	TF binding site mE1_TFBS_sens
X	21456447	X_21456447_INS [dm3] X_21585420_INS [dm6]	A	ATGCGATCGTTCTGTG...	1.551e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2L	12123438	2L_12123438_SNP [dm3] 2L_12123438_SNP [dm6]	A	G	1.552e^-4	0.668	INTRON CG17211
2L	7722944	2L_7722944_SNP [dm3] 2L_7722944_SNP [dm6]	G	T	1.553e^-4	0.668	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
2L	14803298	2L_14803298_SNP [dm3] 2L_14803298_SNP [dm6]	A	T	1.555e^-4	0.668	DOWNSTREAM CG33308 INTERGENIC
X	21456381	X_21456381_INS [dm3] X_21585354_INS [dm6]	G	GCCTTAAA	1.557e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2L	7513812	2L_7513812_SNP [dm3] 2L_7513812_SNP [dm6]	C	T	1.563e^-4	0.668	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	5739111	X_5739111_SNP [dm3] X_5845078_SNP [dm6]	G	T	1.568e^-4	0.668	UPSTREAM CG12729 INTERGENIC
3R	18779247	3R_18779247_SNP [dm3] 3R_22953525_SNP [dm6]	G	T	1.570e^-4	0.668	INTRON klg
2L	18361834	2L_18361834_SNP [dm3] 2L_18361834_SNP [dm6]	T	A	1.571e^-4	0.668	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5739233	X_5739233_SNP [dm3] X_5845200_SNP [dm6]	C	T	1.576e^-4	0.668	UPSTREAM CG12729 INTERGENIC
2R	4405668	2R_4405668_SNP [dm3] 2R_8518163_SNP [dm6]	A	G	1.577e^-4	0.668	INTRON mtt
2L	14037364	2L_14037364_SNP [dm3] 2L_14037364_SNP [dm6]	C	A	1.586e^-4	0.668	EXON CR45284
2L	18346348	2L_18346348_SNP [dm3] 2L_18346348_SNP [dm6]	C	A	1.586e^-4	0.668	INTRON Fas3
3R	6724553	3R_6724553_INS [dm3] 3R_10898831_INS [dm6]	A	ACCTTTGTTAGTA...	1.590e^-4	0.668	UPSTREAM CR45578 INTERGENIC
3L	1183349	3L_1183349_SNP [dm3] 3L_1183349_SNP [dm6]	G	T	1.591e^-4	0.668	INTERGENIC
3L	6193755	3L_6193755_SNP [dm3] 3L_6200655_SNP [dm6]	C	T	1.605e^-4	0.668	DOWNSTREAM Trn INTRON CG8219	TF binding site mE1_TFBS_cad
X	2249279	X_2249279_SNP [dm3] X_2355246_SNP [dm6]	G	T	1.612e^-4	0.668	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
X	5739346	X_5739346_DEL [dm3] X_5845313_DEL [dm6]	AA	A	1.633e^-4	0.668	UTR_5_PRIME CG12729
2R	2077035	2R_2077035_SNP [dm3] 2R_6189530_SNP [dm6]	C	T	1.641e^-4	0.668	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2R	7106808	2R_7106808_SNP [dm3] 2R_11219303_SNP [dm6]	T	A	1.641e^-4	0.668	UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	6044600	3R_6044600_SNP [dm3] 3R_10218878_SNP [dm6]	G	T	1.648e^-4	0.668	INTRON Syn
2R	2081776	2R_2081776_SNP [dm3] 2R_6194271_SNP [dm6]	A	G	1.658e^-4	0.668	INTRON Ptr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	18347674	2L_18347674_SNP [dm3] 2L_18347674_SNP [dm6]	A	C	1.663e^-4	0.668	INTRON Fas3
2R	14006149	2R_14006149_SNP [dm3] 2R_18118644_SNP [dm6]	G	A	1.665e^-4	0.668	UTR_3_PRIME stau DOWNSTREAM stau
X	15632967	X_15632967_SNP [dm3] X_15738934_SNP [dm6]	C	T	1.670e^-4	0.668	UTR_5_PRIME CG11679 UPSTREAM CG8206	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6955317	2L_6955317_SNP [dm3] 2L_6955317_SNP [dm6]	C	A	1.677e^-4	0.668	SYNONYMOUS_CODING CG13775 DOWNSTREAM SA	TF binding site mE1_TFBS_sens
X	2249366	X_2249366_SNP [dm3] X_2355333_SNP [dm6]	T	A	1.682e^-4	0.668	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3L	17271470	3L_17271470_SNP [dm3] 3L_17278370_SNP [dm6]	G	T	1.683e^-4	0.668	INTERGENIC
2L	14278412	2L_14278412_SNP [dm3] 2L_14278412_SNP [dm6]	A	G	1.687e^-4	0.668	SYNONYMOUS_CODING wb DOWNSTREAM CG32971	TF binding site mE1_TFBS_HSA
3R	3060173	3R_3060173_SNP [dm3] 3R_7234451_SNP [dm6]	C	T	1.693e^-4	0.668	INTRON CG14608
X	19141809	X_19141809_SNP [dm3] X_19247776_SNP [dm6]	T	G	1.695e^-4	0.668	UPSTREAM CG7992 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12024161	2R_12024161_SNP [dm3] 2R_16136656_SNP [dm6]	G	T	1.702e^-4	0.668	INTRON spin
X	12404332	X_12404332_SNP [dm3] X_12510299_SNP [dm6]	C	A	1.702e^-4	0.668	INTRON CG2556
3R	15880138	3R_15880138_SNP [dm3] 3R_20054416_SNP [dm6]	C	T	1.706e^-4	0.668	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21456405	X_21456405_SNP [dm3] X_21585378_SNP [dm6]	A	C	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456412	X_21456412_INS [dm3] X_21585385_INS [dm6]	C	CTG	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456414	X_21456414_SNP [dm3] X_21585387_SNP [dm6]	T	G	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456419	X_21456419_SNP [dm3] X_21585392_SNP [dm6]	C	T	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456422	X_21456422_INS [dm3] X_21585395_INS [dm6]	C	AA	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456428	X_21456428_INS [dm3] X_21585401_INS [dm6]	T	TGAGAGC	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456432	X_21456432_SNP [dm3] X_21585405_SNP [dm6]	G	A	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456434	X_21456434_SNP [dm3] X_21585407_SNP [dm6]	A	T	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
X	21456438	X_21456438_INS [dm3] X_21585411_INS [dm6]	G	TGTC	1.708e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3R	13458313	3R_13458313_SNP [dm3] 3R_17632591_SNP [dm6]	C	T	1.709e^-4	0.668	DOWNSTREAM tRNA:CR31573 INTRON CG43175
3R	13458322	3R_13458322_SNP [dm3] 3R_17632600_SNP [dm6]	A	C	1.709e^-4	0.668	DOWNSTREAM tRNA:CR31573 INTRON CG43175
3L	18544739	3L_18544739_SNP [dm3] 3L_18551639_SNP [dm6]	C	T	1.709e^-4	0.668	INTERGENIC
2L	7513832	2L_7513832_SNP [dm3] 2L_7513832_SNP [dm6]	A	T	1.714e^-4	0.668	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12394442	2L_12394442_SNP [dm3] 2L_12394442_SNP [dm6]	C	T	1.718e^-4	0.668	INTRON bru-2
3L	10396397	3L_10396397_SNP [dm3] 3L_10403297_SNP [dm6]	C	T	1.721e^-4	0.668	INTERGENIC
3R	16037676	3R_16037676_SNP [dm3] 3R_20211954_SNP [dm6]	G	A	1.725e^-4	0.668	SYNONYMOUS_CODING Nlg4
3L	6912872	3L_6912872_SNP [dm3] 3L_6919772_SNP [dm6]	G	T	1.726e^-4	0.668	INTERGENIC
2R	2025616	2R_2025616_SNP [dm3] 2R_6138111_SNP [dm6]	T	C	1.735e^-4	0.668	SYNONYMOUS_CODING CG14589 INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4434150	X_4434150_SNP [dm3] X_4540117_SNP [dm6]	G	T	1.735e^-4	0.668	SYNONYMOUS_CODING rb UPSTREAM CHOp24 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	2587252	2R_2587252_INS [dm3] 2R_6699747_INS [dm6]	T	TT	1.737e^-4	0.668	UTR_3_PRIME CG3409 & 1 other DOWNSTREAM Rab2 & 2 others
3L	11969155	3L_11969155_SNP [dm3] 3L_11976055_SNP [dm6]	A	T	1.738e^-4	0.668	UPSTREAM CG43896 DOWNSTREAM CG14125 INTERGENIC
2R	15271342	2R_15271342_INS [dm3] 2R_19383837_INS [dm6]	T	TG	1.749e^-4	0.668	SPLICE_SITE_REGION CG10073 INTRON CG10073
2L	878216	2L_878216_DEL [dm3] 2L_878216_DEL [dm6]	AAGCCCCCA	A	1.751e^-4	0.668	UTR_3_PRIME CG15824 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19405995	2R_19405995_SNP [dm3] 2R_23518472_SNP [dm6]	A	C	1.753e^-4	0.668	INTERGENIC
3L	7002809	3L_7002809_SNP [dm3] 3L_7009709_SNP [dm6]	C	A	1.768e^-4	0.668	INTRON Mp
3L	17271467	3L_17271467_SNP [dm3] 3L_17278367_SNP [dm6]	C	T	1.770e^-4	0.668	INTERGENIC
2L	12330219	2L_12330219_SNP [dm3] 2L_12330219_SNP [dm6]	G	T	1.771e^-4	0.668	INTERGENIC
2L	18355584	2L_18355584_SNP [dm3] 2L_18355584_SNP [dm6]	C	T	1.772e^-4	0.668	DOWNSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5739227	X_5739227_SNP [dm3] X_5845194_SNP [dm6]	C	A	1.774e^-4	0.668	UPSTREAM CG12729 INTERGENIC
3L	6587989	3L_6587989_SNP [dm3] 3L_6594889_SNP [dm6]	T	C	1.779e^-4	0.668	DOWNSTREAM CG18769 INTRON ndl
2L	18357461	2L_18357461_SNP [dm3] 2L_18357461_SNP [dm6]	T	A	1.780e^-4	0.668	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	18358757	2L_18358757_SNP [dm3] 2L_18358757_SNP [dm6]	C	A	1.780e^-4	0.668	INTRON Fas3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7002864	3L_7002864_SNP [dm3] 3L_7009764_SNP [dm6]	C	T	1.782e^-4	0.668	INTRON Mp
2R	8534305	2R_8534305_SNP [dm3] 2R_12646800_SNP [dm6]	C	T	1.793e^-4	0.668	INTRON CG8785
3L	16055537	3L_16055537_SNP [dm3] 3L_16062437_SNP [dm6]	G	A	1.824e^-4	0.668	SYNONYMOUS_CODING Mbs
X	13490797	X_13490797_SNP [dm3] X_13596764_SNP [dm6]	G	A	1.831e^-4	0.668	INTRON up
2R	14491489	2R_14491489_SNP [dm3] 2R_18603984_SNP [dm6]	G	C	1.833e^-4	0.668	INTRON GEFmeso	TF binding site mE1_TFBS_inv
2L	6176838	2L_6176838_SNP [dm3] 2L_6176838_SNP [dm6]	A	C	1.839e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2992823	X_2992823_SNP [dm3] X_3098790_SNP [dm6]	A	C	1.840e^-4	0.668	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	8885823	3L_8885823_SNP [dm3] 3L_8892723_SNP [dm6]	A	G	1.841e^-4	0.668	SYNONYMOUS_CODING Mcm7	TF binding site mE1_TFBS_chinmo
X	2830192	X_2830192_SNP [dm3] X_2936159_SNP [dm6]	A	G	1.844e^-4	0.668	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
X	17206123	X_17206123_SNP [dm3] X_17312090_SNP [dm6]	T	C	1.852e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12339926	3L_12339926_SNP [dm3] 3L_12346826_SNP [dm6]	A	C	1.855e^-4	0.668	INTRON CrzR
2L	3672401	2L_3672401_SNP [dm3] 2L_3672401_SNP [dm6]	C	T	1.856e^-4	0.668	INTRON CG34340
2R	14291500	2R_14291500_SNP [dm3] 2R_18403995_SNP [dm6]	A	G	1.858e^-4	0.668	UTR_3_PRIME GstE4 UPSTREAM GstE5	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	20354799	2L_20354799_SNP [dm3] 2L_20354799_SNP [dm6]	G	A	1.862e^-4	0.668	INTRON RtGEF
3R	25790161	3R_25790161_SNP [dm3] 3R_29964439_SNP [dm6]	T	G	1.863e^-4	0.668	INTRON TkR99D
3L	12496670	3L_12496670_SNP [dm3] 3L_12503570_SNP [dm6]	T	C	1.865e^-4	0.668	SYNONYMOUS_CODING CG10646 UPSTREAM vih DOWNSTREAM CG10681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	19454345	2R_19454345_SNP [dm3] 2R_23566822_SNP [dm6]	T	A	1.870e^-4	0.668	INTRON apt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19454352	2R_19454352_SNP [dm3] 2R_23566829_SNP [dm6]	C	T	1.870e^-4	0.668	INTRON apt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14056190	3R_14056190_SNP [dm3] 3R_18230468_SNP [dm6]	G	A	1.870e^-4	0.668	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	16023258	3L_16023258_SNP [dm3] 3L_16030158_SNP [dm6]	C	T	1.871e^-4	0.668	SYNONYMOUS_CODING Notum	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7722941	2L_7722941_SNP [dm3] 2L_7722941_SNP [dm6]	T	A	1.877e^-4	0.668	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
3L	19237871	3L_19237871_SNP [dm3] 3L_19244771_SNP [dm6]	C	A	1.878e^-4	0.668	INTERGENIC
2L	1324046	2L_1324046_SNP [dm3] 2L_1324046_SNP [dm6]	C	A	1.878e^-4	0.668	INTERGENIC
3L	1694077	3L_1694077_SNP [dm3] 3L_1694077_SNP [dm6]	A	C	1.884e^-4	0.668	UPSTREAM CG12011 INTRON CG7991
2L	18347569	2L_18347569_SNP [dm3] 2L_18347569_SNP [dm6]	T	A	1.887e^-4	0.668	INTRON Fas3
3R	19544996	3R_19544996_SNP [dm3] 3R_23719274_SNP [dm6]	A	C	1.889e^-4	0.668	UPSTREAM nau DOWNSTREAM CG10232 INTERGENIC
3L	2311391	3L_2311391_SNP [dm3] 3L_2311391_SNP [dm6]	A	C	1.890e^-4	0.668	INTERGENIC
3L	17271453	3L_17271453_INS [dm3] 3L_17278353_INS [dm6]	T	TCCT	1.891e^-4	0.668	INTERGENIC
X	17045567	X_17045567_SNP [dm3] X_17151534_SNP [dm6]	G	A	1.893e^-4	0.668	UTR_3_PRIME xmas-1 DOWNSTREAM CG5010
3L	15388358	3L_15388358_SNP [dm3] 3L_15395258_SNP [dm6]	T	C	1.904e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15879016	3R_15879016_SNP [dm3] 3R_20053294_SNP [dm6]	A	C	1.925e^-4	0.668	INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	16774894	2L_16774894_SNP [dm3] 2L_16774894_SNP [dm6]	A	G	1.925e^-4	0.668	INTRON Mhc
2R	2077835	2R_2077835_SNP [dm3] 2R_6190330_SNP [dm6]	C	T	1.934e^-4	0.668	UPSTREAM tRNA:N5:42Ad & 1 other INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7479492	3L_7479492_SNP [dm3] 3L_7486392_SNP [dm6]	A	G	1.934e^-4	0.668	NON_SYNONYMOUS_CODING mthl6
3L	6875579	3L_6875579_SNP [dm3] 3L_6882479_SNP [dm6]	C	G	1.937e^-4	0.668	DOWNSTREAM CR45416 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17271447	3L_17271447_INS [dm3] 3L_17278347_INS [dm6]	A	AAAATTACTTGA...	1.940e^-4	0.668	INTERGENIC
2R	18606069	2R_18606069_SNP [dm3] 2R_22718564_SNP [dm6]	A	G	1.942e^-4	0.668	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6098109	3L_6098109_SNP [dm3] 3L_6105009_SNP [dm6]	C	T	1.945e^-4	0.668	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14489749	2R_14489749_SNP [dm3] 2R_18602244_SNP [dm6]	A	T	1.950e^-4	0.668	INTRON GEFmeso
2L	1825767	2L_1825767_SNP [dm3] 2L_1825767_SNP [dm6]	C	T	1.953e^-4	0.668	SYNONYMOUS_CODING CG31664
3R	9972456	3R_9972456_DEL [dm3] 3R_14146734_DEL [dm6]	CAAAC	C	1.954e^-4	0.668	INTERGENIC
3L	9987129	3L_9987129_SNP [dm3] 3L_9994029_SNP [dm6]	T	G	1.955e^-4	0.668	INTRON dpr6
2L	18322514	2L_18322514_SNP [dm3] 2L_18322514_SNP [dm6]	C	T	1.961e^-4	0.668	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
3R	15628492	3R_15628492_SNP [dm3] 3R_19802770_SNP [dm6]	C	A	1.963e^-4	0.668	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13490825	X_13490825_SNP [dm3] X_13596792_SNP [dm6]	A	T	1.966e^-4	0.668	INTRON up
3R	14723781	3R_14723781_SNP [dm3] 3R_18898059_SNP [dm6]	A	T	1.968e^-4	0.668	UPSTREAM CG14297 INTERGENIC
2R	8109809	2R_8109809_SNP [dm3] 2R_12222304_SNP [dm6]	T	A	1.969e^-4	0.668	INTERGENIC
2R	18716019	2R_18716019_SNP [dm3] 2R_22828496_SNP [dm6]	C	G	1.969e^-4	0.668	INTRON CG30274 & 1 other
X	21456195	X_21456195_SNP [dm3] X_21585168_SNP [dm6]	C	T	1.970e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3R	9753290	3R_9753290_SNP [dm3] 3R_13927568_SNP [dm6]	A	T	1.972e^-4	0.668	INTERGENIC
3R	6043518	3R_6043518_SNP [dm3] 3R_10217796_SNP [dm6]	T	C	1.976e^-4	0.668	SYNONYMOUS_CODING Syn UTR_3_PRIME Syn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20329874	2L_20329874_SNP [dm3] 2L_20329874_SNP [dm6]	T	C	1.976e^-4	0.668	INTRON spir
3L	15388354	3L_15388354_SNP [dm3] 3L_15395254_SNP [dm6]	C	G	1.983e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19441077	2L_19441077_SNP [dm3] 2L_19441077_SNP [dm6]	A	G	1.986e^-4	0.668	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8447819	3L_8447819_SNP [dm3] 3L_8454719_SNP [dm6]	A	C	1.987e^-4	0.668	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	8529938	2R_8529938_SNP [dm3] 2R_12642433_SNP [dm6]	A	G	1.988e^-4	0.668	INTRON CG8785
2L	7336601	2L_7336601_DEL [dm3] 2L_7336601_DEL [dm6]	TGT	T	1.989e^-4	0.668	INTRON Wnt6
2L	18358154	2L_18358154_SNP [dm3] 2L_18358154_SNP [dm6]	T	A	1.993e^-4	0.668	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	23632847	3R_23632847_SNP [dm3] 3R_27807125_SNP [dm6]	T	C	1.993e^-4	0.668	INTRON CG34353
2R	8495258	2R_8495258_SNP [dm3] 2R_12607753_SNP [dm6]	A	G	2.004e^-4	0.668	INTRON Amph
2L	5937260	2L_5937260_SNP [dm3] 2L_5937260_SNP [dm6]	G	A	2.008e^-4	0.668	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9987286	3L_9987286_SNP [dm3] 3L_9994186_SNP [dm6]	C	T	2.008e^-4	0.668	INTRON dpr6
2L	2468928	2L_2468928_SNP [dm3] 2L_2468928_SNP [dm6]	C	G	2.010e^-4	0.668	INTERGENIC	enhancer FlyBase
X	2249367	X_2249367_SNP [dm3] X_2355334_SNP [dm6]	G	A	2.011e^-4	0.668	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	7048849	3R_7048849_SNP [dm3] 3R_11223127_SNP [dm6]	A	G	2.026e^-4	0.668	SYNONYMOUS_CODING RpL3 UPSTREAM snoRNA:Psi28S-291 & 1 other DOWNSTREAM snoRNA:Me18S-C1096 & 2 others INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7050729	3R_7050729_SNP [dm3] 3R_11225007_SNP [dm6]	T	A	2.026e^-4	0.668	UTR_3_PRIME RpL3 UPSTREAM scpr-C DOWNSTREAM snoRNA:Me28S-G2017 & 1 other
2L	12362127	2L_12362127_SNP [dm3] 2L_12362127_SNP [dm6]	C	T	2.027e^-4	0.668	INTRON bru-2
3R	15878353	3R_15878353_SNP [dm3] 3R_20052631_SNP [dm6]	A	C	2.028e^-4	0.668	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15880778	3R_15880778_INS [dm3] 3R_20055056_INS [dm6]	T	TGCT	2.030e^-4	0.668	UPSTREAM CG17193 INTRON CG17193
2L	18478431	2L_18478431_SNP [dm3] 2L_18478431_SNP [dm6]	G	A	2.033e^-4	0.668	INTRON CG10283
2R	14116446	2R_14116446_SNP [dm3] 2R_18228941_SNP [dm6]	C	T	2.035e^-4	0.668	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl
2R	14116462	2R_14116462_SNP [dm3] 2R_18228957_SNP [dm6]	T	A	2.035e^-4	0.668	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl
2L	3661577	2L_3661577_SNP [dm3] 2L_3661577_SNP [dm6]	T	C	2.044e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18867245	X_18867245_INS [dm3] X_18973212_INS [dm6]	C	CTTTGAATGC	2.047e^-4	0.668	INTRON CG43759
3L	7479484	3L_7479484_SNP [dm3] 3L_7486384_SNP [dm6]	C	T	2.056e^-4	0.668	SYNONYMOUS_CODING mthl6
3L	8409359	3L_8409359_SNP [dm3] 3L_8416259_SNP [dm6]	G	A	2.058e^-4	0.668	SYNONYMOUS_CODING CG32354 DOWNSTREAM Exo70
3L	10396467	3L_10396467_SNP [dm3] 3L_10403367_SNP [dm6]	C	T	2.061e^-4	0.668	INTERGENIC
X	6149805	X_6149805_SNP [dm3] X_6255772_SNP [dm6]	A	C	2.062e^-4	0.668	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6163426	3L_6163426_SNP [dm3] 3L_6170326_SNP [dm6]	C	T	2.065e^-4	0.668	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad
3R	19797571	3R_19797571_SNP [dm3] 3R_23971849_SNP [dm6]	G	A	2.066e^-4	0.668	INTRON CG31140
X	4862283	X_4862283_DEL [dm3] X_4968250_DEL [dm6]	AACA	A	2.067e^-4	0.668	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4246415	2L_4246415_SNP [dm3] 2L_4246415_SNP [dm6]	A	G	2.067e^-4	0.668	EXON CR44059
2R	14488880	2R_14488880_SNP [dm3] 2R_18601375_SNP [dm6]	G	A	2.068e^-4	0.668	INTRON GEFmeso
2L	13351629	2L_13351629_SNP [dm3] 2L_13351629_SNP [dm6]	C	T	2.073e^-4	0.668	INTRON CG9395
3R	17548123	3R_17548123_SNP [dm3] 3R_21722401_SNP [dm6]	C	T	2.074e^-4	0.668	INTRON CR44096	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
2R	9951689	2R_9951689_SNP [dm3] 2R_14064184_SNP [dm6]	T	C	2.078e^-4	0.668	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13887398	3L_13887398_DEL [dm3] 3L_13894298_DEL [dm6]	TAAATCAAGTT...	T	2.082e^-4	0.668	INTRON dysc
3L	18544767	3L_18544767_SNP [dm3] 3L_18551667_SNP [dm6]	T	C	2.087e^-4	0.668	INTERGENIC
X	18939954	X_18939954_SNP [dm3] X_19045921_SNP [dm6]	A	T	2.092e^-4	0.668	INTERGENIC
3L	6430535	3L_6430535_SNP [dm3] 3L_6437435_SNP [dm6]	T	C	2.099e^-4	0.668	INTRON CG42747
X	3482664	X_3482664_SNP [dm3] X_3588631_SNP [dm6]	A	C	2.103e^-4	0.668	INTRON AstA-R1
2L	20847219	2L_20847219_SNP [dm3] 2L_20847219_SNP [dm6]	T	A	2.104e^-4	0.668	DOWNSTREAM CR44307 INTRON CG31676
3R	1745870	3R_1745870_SNP [dm3] 3R_5920148_SNP [dm6]	T	C	2.104e^-4	0.668	INTRON CG34113
3L	6255689	3L_6255689_SNP [dm3] 3L_6262589_SNP [dm6]	T	C	2.105e^-4	0.668	UTR_5_PRIME ImpL3 DOWNSTREAM CR44522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16984313	3L_16984313_SNP [dm3] 3L_16991213_SNP [dm6]	A	G	2.105e^-4	0.668	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
X	13375290	X_13375290_SNP [dm3] X_13481257_SNP [dm6]	A	G	2.106e^-4	0.668	INTRON Neto
3L	5507755	3L_5507755_SNP [dm3] 3L_5514655_SNP [dm6]	T	C	2.108e^-4	0.668	INTRON Lkr
3L	6171042	3L_6171042_SNP [dm3] 3L_6177942_SNP [dm6]	A	T	2.120e^-4	0.668	DOWNSTREAM CG10274 INTRON CG7376
X	17206178	X_17206178_SNP [dm3] X_17312145_SNP [dm6]	T	C	2.122e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2830042	X_2830042_SNP [dm3] X_2936009_SNP [dm6]	A	G	2.134e^-4	0.668	DOWNSTREAM CG3592 INTRON kirre
2L	18483085	2L_18483085_SNP [dm3] 2L_18483085_SNP [dm6]	T	C	2.139e^-4	0.668	INTRON CG10283
3L	7479400	3L_7479400_SNP [dm3] 3L_7486300_SNP [dm6]	A	C	2.144e^-4	0.668	SYNONYMOUS_CODING mthl6
3L	12497170	3L_12497170_SNP [dm3] 3L_12504070_SNP [dm6]	C	G	2.151e^-4	0.668	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10394621	3L_10394621_SNP [dm3] 3L_10401521_SNP [dm6]	A	G	2.153e^-4	0.668	INTERGENIC
2L	4087405	2L_4087405_SNP [dm3] 2L_4087405_SNP [dm6]	G	T	2.156e^-4	0.668	INTRON ed
3L	12497242	3L_12497242_SNP [dm3] 3L_12504142_SNP [dm6]	G	T	2.157e^-4	0.668	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5857930	2R_5857930_DEL [dm3] 2R_9970425_DEL [dm6]	CC	C	2.163e^-4	0.668	UPSTREAM CG12134 INTRON Adam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8442848	2R_8442848_SNP [dm3] 2R_12555343_SNP [dm6]	G	A	2.168e^-4	0.668	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20511042	2R_20511042_INS [dm3] 2R_24623519_INS [dm6]	A	AAGT	2.175e^-4	0.668	INTRON CG13594	TF binding site BDTNP1_TFBS_dl
2L	5363325	2L_5363325_SNP [dm3] 2L_5363325_SNP [dm6]	T	C	2.176e^-4	0.668	UTR_3_PRIME nompC INTRON nompC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2421314	2L_2421314_SNP [dm3] 2L_2421314_SNP [dm6]	C	T	2.177e^-4	0.668	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	18774040	2L_18774040_SNP [dm3] 2L_18774040_SNP [dm6]	C	T	2.185e^-4	0.668	UPSTREAM CR43804 INTRON ham
3L	957283	3L_957283_SNP [dm3] 3L_957283_SNP [dm6]	G	A	2.196e^-4	0.668	INTRON Glut1
X	7208217	X_7208217_SNP [dm3] X_7314184_SNP [dm6]	A	G	2.197e^-4	0.668	DOWNSTREAM Atg5 INTRON CR44357 & 1 other
2L	13351654	2L_13351654_SNP [dm3] 2L_13351654_SNP [dm6]	T	A	2.198e^-4	0.668	INTRON CG9395
2L	12330179	2L_12330179_SNP [dm3] 2L_12330179_SNP [dm6]	A	G	2.199e^-4	0.668	INTERGENIC
3R	4922337	3R_4922337_SNP [dm3] 3R_9096615_SNP [dm6]	G	C	2.200e^-4	0.668	INTRON pum
X	15594237	X_15594237_SNP [dm3] X_15700204_SNP [dm6]	T	A	2.201e^-4	0.668	UTR_3_PRIME CG9240 DOWNSTREAM CG8128
2L	17576850	2L_17576850_SNP [dm3] 2L_17576850_SNP [dm6]	G	A	2.211e^-4	0.668	INTERGENIC
2R	18325510	2R_18325510_SNP [dm3] 2R_22438005_SNP [dm6]	T	G	2.212e^-4	0.668	INTERGENIC
2L	18576255	2L_18576255_SNP [dm3] 2L_18576255_SNP [dm6]	C	A	2.212e^-4	0.668	INTRON Pde11
2R	7107114	2R_7107114_SNP [dm3] 2R_11219609_SNP [dm6]	C	T	2.215e^-4	0.668	SPLICE_SITE_DONOR CG9084 UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	11101473	3R_11101473_SNP [dm3] 3R_15275751_SNP [dm6]	A	G	2.218e^-4	0.668	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	1817121	2L_1817121_SNP [dm3] 2L_1817121_SNP [dm6]	T	A	2.226e^-4	0.668	INTERGENIC
3R	13669846	3R_13669846_SNP [dm3] 3R_17844124_SNP [dm6]	A	C	2.228e^-4	0.668	INTRON tinc
2L	14000414	2L_14000414_INS [dm3] 2L_14000414_INS [dm6]	T	TCCT	2.228e^-4	0.668	INTRON rk
3L	8546058	3L_8546058_SNP [dm3] 3L_8552958_SNP [dm6]	T	A	2.232e^-4	0.668	INTRON rhea
2L	9612995	2L_9612995_SNP [dm3] 2L_9612995_SNP [dm6]	G	T	2.234e^-4	0.668	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	1547019	2R_1547019_SNP [dm3] 2R_5659514_SNP [dm6]	C	T	2.235e^-4	0.668	INTRON Not3	transposable element FlyBase
2L	4087429	2L_4087429_SNP [dm3] 2L_4087429_SNP [dm6]	A	C	2.235e^-4	0.668	INTRON ed
3R	13485854	3R_13485854_SNP [dm3] 3R_17660132_SNP [dm6]	T	A	2.236e^-4	0.668	INTRON CG14322
3R	19108722	3R_19108722_SNP [dm3] 3R_23283000_SNP [dm6]	C	T	2.238e^-4	0.668	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_HSA
2R	8109819	2R_8109819_DEL [dm3] 2R_12222314_DEL [dm6]	GT	G	2.239e^-4	0.668	INTERGENIC
3L	13778987	3L_13778987_SNP [dm3] 3L_13785887_SNP [dm6]	C	T	2.242e^-4	0.668	INTRON bru-3
2L	18387732	2L_18387732_INS [dm3] 2L_18387732_INS [dm6]	C	CCAAAGACACTAGAATAACT...	2.242e^-4	0.668	DOWNSTREAM Fas3 INTRON Fas3
2R	7122334	2R_7122334_SNP [dm3] 2R_11234829_SNP [dm6]	T	C	2.256e^-4	0.668	UPSTREAM CG13227 DOWNSTREAM CG13228 INTERGENIC
3L	12215369	3L_12215369_SNP [dm3] 3L_12222269_SNP [dm6]	G	T	2.258e^-4	0.668	INTRON app
2R	9951590	2R_9951590_SNP [dm3] 2R_14064085_SNP [dm6]	T	C	2.261e^-4	0.668	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16552671	2L_16552671_SNP [dm3] 2L_16552671_SNP [dm6]	C	T	2.275e^-4	0.668	INTRON CG42389
3R	3072189	3R_3072189_SNP [dm3] 3R_7246467_SNP [dm6]	T	C	2.275e^-4	0.668	NON_SYNONYMOUS_CODING CG1234 UPSTREAM CG10053	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14036644	3R_14036644_SNP [dm3] 3R_18210922_SNP [dm6]	G	A	2.275e^-4	0.668	INTRON CG7985
2R	7624711	2R_7624711_SNP [dm3] 2R_11737206_SNP [dm6]	T	G	2.276e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	14000418	2L_14000418_SNP [dm3] 2L_14000418_SNP [dm6]	T	A	2.278e^-4	0.668	INTRON rk
2L	17117015	2L_17117015_SNP [dm3] 2L_17117015_SNP [dm6]	T	G	2.280e^-4	0.668	INTERGENIC
2L	12106375	2L_12106375_SNP [dm3] 2L_12106375_SNP [dm6]	T	A	2.287e^-4	0.668	SYNONYMOUS_CODING Aats-thr DOWNSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5739231	X_5739231_SNP [dm3] X_5845198_SNP [dm6]	C	T	2.295e^-4	0.668	UPSTREAM CG12729 INTERGENIC
X	18971486	X_18971486_SNP [dm3] X_19077453_SNP [dm6]	G	T	2.296e^-4	0.668	UPSTREAM CG7406 INTERGENIC
2R	21064890	2R_21064890_SNP [dm3] 2R_25177367_SNP [dm6]	G	A	2.300e^-4	0.668	UPSTREAM Peb INTERGENIC
3L	17271476	3L_17271476_INS [dm3] 3L_17278376_INS [dm6]	C	CAAGAC	2.314e^-4	0.668	INTERGENIC
X	21456443	X_21456443_SNP [dm3] X_21585416_SNP [dm6]	A	G	2.319e^-4	0.668	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2L	14000402	2L_14000402_MNP [dm3] 2L_14000402_MNP [dm6]	ACA	TTT	2.321e^-4	0.668	INTRON rk
2L	14000406	2L_14000406_INS [dm3] 2L_14000406_INS [dm6]	G	CTTTCGTTTTGGA...	2.321e^-4	0.668	INTRON rk
X	5739238	X_5739238_INS [dm3] X_5845205_INS [dm6]	T	TATAACAA	2.322e^-4	0.668	UPSTREAM CG12729 INTERGENIC
3L	11807785	3L_11807785_SNP [dm3] 3L_11814685_SNP [dm6]	C	A	2.324e^-4	0.668	UTR_5_PRIME CG42255 UPSTREAM CG14130
2R	9353888	2R_9353888_SNP [dm3] 2R_13466383_SNP [dm6]	A	G	2.327e^-4	0.668	INTRON arr
X	9094140	X_9094140_SNP [dm3] X_9200107_SNP [dm6]	G	A	2.337e^-4	0.668	INTRON su_r_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7109756	3L_7109756_SNP [dm3] 3L_7116656_SNP [dm6]	G	A	2.339e^-4	0.668	INTRON form3
2L	12886739	2L_12886739_SNP [dm3] 2L_12886739_SNP [dm6]	A	C	2.339e^-4	0.668	INTERGENIC
2L	3425278	2L_3425278_SNP [dm3] 2L_3425278_SNP [dm6]	G	T	2.342e^-4	0.668	INTRON pgant2
3L	6167176	3L_6167176_SNP [dm3] 3L_6174076_SNP [dm6]	A	G	2.344e^-4	0.668	UPSTREAM CG7376 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	16067227	3R_16067227_SNP [dm3] 3R_20241505_SNP [dm6]	T	C	2.359e^-4	0.668	INTRON Nlg4
3L	6170234	3L_6170234_SNP [dm3] 3L_6177134_SNP [dm6]	G	A	2.360e^-4	0.668	NON_SYNONYMOUS_CODING CG7376
3R	1724207	3R_1724207_SNP [dm3] 3R_5898485_SNP [dm6]	G	A	2.364e^-4	0.668	INTRON CG34113
X	2249372	X_2249372_SNP [dm3] X_2355339_SNP [dm6]	A	G	2.365e^-4	0.668	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	15191335	3R_15191335_SNP [dm3] 3R_19365613_SNP [dm6]	G	T	2.373e^-4	0.668	INTERGENIC
2R	8519545	2R_8519545_SNP [dm3] 2R_12632040_SNP [dm6]	T	C	2.377e^-4	0.668	SYNONYMOUS_CODING muskelin UPSTREAM CG33792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20792614	3R_20792614_SNP [dm3] 3R_24966892_SNP [dm6]	C	T	2.386e^-4	0.668	INTERGENIC
2L	18359715	2L_18359715_SNP [dm3] 2L_18359715_SNP [dm6]	A	G	2.386e^-4	0.668	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	18347657	2L_18347657_SNP [dm3] 2L_18347657_SNP [dm6]	C	G	2.387e^-4	0.668	INTRON Fas3
3L	10637037	3L_10637037_SNP [dm3] 3L_10643937_SNP [dm6]	A	G	2.389e^-4	0.668	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
2L	20845728	2L_20845728_SNP [dm3] 2L_20845728_SNP [dm6]	C	T	2.393e^-4	0.668	INTRON CG31676
2L	7513835	2L_7513835_SNP [dm3] 2L_7513835_SNP [dm6]	G	A	2.394e^-4	0.668	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19097202	3R_19097202_SNP [dm3] 3R_23271480_SNP [dm6]	T	C	2.407e^-4	0.668	INTRON orb
2R	8114217	2R_8114217_SNP [dm3] 2R_12226712_SNP [dm6]	G	A	2.407e^-4	0.668	START_GAINED CG8854 UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3L	7489736	3L_7489736_SNP [dm3] 3L_7496636_SNP [dm6]	G	T	2.408e^-4	0.668	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3R	9871242	3R_9871242_SNP [dm3] 3R_14045520_SNP [dm6]	C	T	2.410e^-4	0.668	UPSTREAM tRNA:S2b:88A INTERGENIC
X	16707276	X_16707276_SNP [dm3] X_16813243_SNP [dm6]	C	G	2.411e^-4	0.668	INTRON CG4829
2L	9612801	2L_9612801_SNP [dm3] 2L_9612801_SNP [dm6]	G	T	2.412e^-4	0.668	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8530578	2R_8530578_SNP [dm3] 2R_12643073_SNP [dm6]	C	T	2.415e^-4	0.668	INTRON CG8785
3L	6963744	3L_6963744_SNP [dm3] 3L_6970644_SNP [dm6]	G	A	2.420e^-4	0.668	DOWNSTREAM CG10063 INTRON CG9953	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20830512	2L_20830512_SNP [dm3] 2L_20830512_SNP [dm6]	G	T	2.428e^-4	0.668	SYNONYMOUS_CODING CG31673 UPSTREAM CG31674
2R	2936299	2R_2936299_SNP [dm3] 2R_7048794_SNP [dm6]	A	G	2.430e^-4	0.668	UPSTREAM lbm DOWNSTREAM Tsp42El INTERGENIC
3R	7045147	3R_7045147_SNP [dm3] 3R_11219425_SNP [dm6]	A	G	2.434e^-4	0.668	NON_SYNONYMOUS_CODING CG6689 DOWNSTREAM CG6693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17538456	3R_17538456_SNP [dm3] 3R_21712734_SNP [dm6]	A	T	2.443e^-4	0.668	INTRON CG31176
3L	7490514	3L_7490514_SNP [dm3] 3L_7497414_SNP [dm6]	C	G	2.447e^-4	0.668	NON_SYNONYMOUS_CODING CG8539
2R	17478302	2R_17478302_SNP [dm3] 2R_21590797_SNP [dm6]	C	G	2.450e^-4	0.668	INTRON CG33225
3R	13805953	3R_13805953_SNP [dm3] 3R_17980231_SNP [dm6]	C	T	2.450e^-4	0.668	INTRON cpo
X	2249345	X_2249345_SNP [dm3] X_2355312_SNP [dm6]	T	C	2.452e^-4	0.668	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	12784513	3R_12784513_SNP [dm3] 3R_16958791_SNP [dm6]	A	G	2.460e^-4	0.668	INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19365252	2L_19365252_SNP [dm3] 2L_19365252_SNP [dm6]	A	T	2.466e^-4	0.668	SYNONYMOUS_CODING CG13086
2L	16397123	2L_16397123_SNP [dm3] 2L_16397123_SNP [dm6]	A	G	2.471e^-4	0.668	INTERGENIC
X	14588205	X_14588205_SNP [dm3] X_14694172_SNP [dm6]	A	G	2.473e^-4	0.668	INTRON NetB
2L	12329980	2L_12329980_SNP [dm3] 2L_12329980_SNP [dm6]	C	A	2.476e^-4	0.668	INTERGENIC
2L	18357445	2L_18357445_SNP [dm3] 2L_18357445_SNP [dm6]	G	C	2.481e^-4	0.668	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	15388364	3L_15388364_SNP [dm3] 3L_15395264_SNP [dm6]	A	T	2.482e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6166198	3L_6166198_INS [dm3] 3L_6173098_INS [dm6]	A	AA	2.482e^-4	0.668	INTRON CG10289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2120145	3L_2120145_SNP [dm3] 3L_2120145_SNP [dm6]	C	T	2.487e^-4	0.668	INTRON zormin
3R	10714475	3R_10714475_SNP [dm3] 3R_14888753_SNP [dm6]	C	A	2.491e^-4	0.668	DOWNSTREAM CycC INTRON CG33332
3R	6722241	3R_6722241_SNP [dm3] 3R_10896519_SNP [dm6]	C	T	2.497e^-4	0.668	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	10310321	3L_10310321_SNP [dm3] 3L_10317221_SNP [dm6]	A	T	2.500e^-4	0.668	INTERGENIC
2R	7125197	2R_7125197_SNP [dm3] 2R_11237692_SNP [dm6]	A	G	2.508e^-4	0.668	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20363191	2L_20363191_SNP [dm3] 2L_20363191_SNP [dm6]	G	T	2.510e^-4	0.668	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
3R	26343661	3R_26343661_DEL [dm3] 3R_30517939_DEL [dm6]	TAT	T	2.513e^-4	0.668	UTR_3_PRIME jdp
3R	6809641	3R_6809641_SNP [dm3] 3R_10983919_SNP [dm6]	C	T	2.513e^-4	0.668	INTRON CG34114
3L	6170112	3L_6170112_SNP [dm3] 3L_6177012_SNP [dm6]	A	G	2.514e^-4	0.668	NON_SYNONYMOUS_CODING CG7376
3L	6171229	3L_6171229_SNP [dm3] 3L_6178129_SNP [dm6]	T	A	2.514e^-4	0.668	SYNONYMOUS_CODING CG7376 DOWNSTREAM CG10274
2L	7334653	2L_7334653_DEL [dm3] 2L_7334653_DEL [dm6]	AA	A	2.519e^-4	0.668	UTR_5_PRIME Wnt6
X	16681158	X_16681158_SNP [dm3] X_16787125_SNP [dm6]	C	T	2.519e^-4	0.668	UPSTREAM Sap30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	7077928	2R_7077928_SNP [dm3] 2R_11190423_SNP [dm6]	C	T	2.534e^-4	0.668	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5680757	3R_5680757_SNP [dm3] 3R_9855035_SNP [dm6]	C	T	2.537e^-4	0.668	INTRON Teh1
X	17150796	X_17150796_SNP [dm3] X_17256763_SNP [dm6]	T	C	2.538e^-4	0.668	INTRON f
2R	2112104	2R_2112104_INS [dm3] 2R_6224599_INS [dm6]	G	GG	2.541e^-4	0.668	INTRON bin3	TF binding site BDTNP1_TFBS_hb
2R	2112108	2R_2112108_SNP [dm3] 2R_6224603_SNP [dm6]	A	G	2.541e^-4	0.668	INTRON bin3	TF binding site BDTNP1_TFBS_hb
2R	1930809	2R_1930809_SNP [dm3] 2R_6043304_SNP [dm6]	A	T	2.543e^-4	0.668	NON_SYNONYMOUS_CODING Tbce	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8952266	X_8952266_SNP [dm3] X_9058233_SNP [dm6]	T	C	2.545e^-4	0.668	INTRON CG15365
X	18777694	X_18777694_SNP [dm3] X_18883661_SNP [dm6]	A	G	2.548e^-4	0.668	UTR_3_PRIME CG34401 UPSTREAM CG7332
3R	15637083	3R_15637083_SNP [dm3] 3R_19811361_SNP [dm6]	C	A	2.549e^-4	0.668	INTRON bnl
3R	17204495	3R_17204495_SNP [dm3] 3R_21378773_SNP [dm6]	T	A	2.552e^-4	0.668	UPSTREAM tin INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	5739244	X_5739244_SNP [dm3] X_5845211_SNP [dm6]	T	G	2.553e^-4	0.668	UPSTREAM CG12729 INTERGENIC
2R	9353699	2R_9353699_SNP [dm3] 2R_13466194_SNP [dm6]	G	A	2.568e^-4	0.668	INTRON arr
2R	15955867	2R_15955867_SNP [dm3] 2R_20068362_SNP [dm6]	T	A	2.570e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14934813	2L_14934813_SNP [dm3] 2L_14934813_SNP [dm6]	T	C	2.571e^-4	0.668	INTRON CG42313
3L	6241699	3L_6241699_SNP [dm3] 3L_6248599_SNP [dm6]	T	A	2.580e^-4	0.668	NON_SYNONYMOUS_CODING Best2
2R	5359176	2R_5359176_SNP [dm3] 2R_9471671_SNP [dm6]	T	C	2.583e^-4	0.668	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11814826	X_11814826_SNP [dm3] X_11920793_SNP [dm6]	A	C	2.584e^-4	0.668	NON_SYNONYMOUS_CODING Sclp UPSTREAM CR32660 DOWNSTREAM Sclp	TF binding site mE1_TFBS_Trl
2R	6525332	2R_6525332_SNP [dm3] 2R_10637827_SNP [dm6]	C	A	2.585e^-4	0.668	INTRON CG11883	TF binding site mE1_TFBS_cad
2R	6525343	2R_6525343_SNP [dm3] 2R_10637838_SNP [dm6]	A	T	2.585e^-4	0.668	INTRON CG11883	TF binding site mE1_TFBS_cad
3L	18216633	3L_18216633_SNP [dm3] 3L_18223533_SNP [dm6]	G	A	2.585e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_inv
3R	17067044	3R_17067044_SNP [dm3] 3R_21241322_SNP [dm6]	A	T	2.585e^-4	0.668	INTERGENIC	regulatory region REDfly_CRMs
3L	7002819	3L_7002819_SNP [dm3] 3L_7009719_SNP [dm6]	T	C	2.590e^-4	0.668	INTRON Mp
2L	15130135	2L_15130135_SNP [dm3] 2L_15130135_SNP [dm6]	A	G	2.597e^-4	0.668	EXON CR43854
3R	17936763	3R_17936763_SNP [dm3] 3R_22111041_SNP [dm6]	C	T	2.598e^-4	0.668	UPSTREAM CG5778 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15873313	3R_15873313_SNP [dm3] 3R_20047591_SNP [dm6]	C	T	2.603e^-4	0.668	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 INTRON CG17193
3L	18849858	3L_18849858_SNP [dm3] 3L_18856758_SNP [dm6]	T	G	2.607e^-4	0.668	UPSTREAM CR45388 INTERGENIC
2L	2269322	2L_2269322_SNP [dm3] 2L_2269322_SNP [dm6]	T	G	2.608e^-4	0.668	UPSTREAM CG17242 INTERGENIC
2R	10589341	2R_10589341_SNP [dm3] 2R_14701836_SNP [dm6]	G	A	2.610e^-4	0.668	INTRON mspo
X	1425011	X_1425011_SNP [dm3] X_1530978_SNP [dm6]	G	A	2.611e^-4	0.668	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	11814823	X_11814823_SNP [dm3] X_11920790_SNP [dm6]	G	C	2.612e^-4	0.668	NON_SYNONYMOUS_CODING Sclp UPSTREAM CR32660 DOWNSTREAM Sclp	TF binding site mE1_TFBS_Trl
3L	10606244	3L_10606244_SNP [dm3] 3L_10613144_SNP [dm6]	C	T	2.614e^-4	0.668	INTERGENIC
3L	6165814	3L_6165814_SNP [dm3] 3L_6172714_SNP [dm6]	A	G	2.616e^-4	0.668	INTRON CG10289	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26199793	3R_26199793_SNP [dm3] 3R_30374071_SNP [dm6]	G	T	2.623e^-4	0.668	INTERGENIC
2R	20029832	2R_20029832_SNP [dm3] 2R_24142309_SNP [dm6]	A	T	2.624e^-4	0.668	INTRON Dat
X	15598315	X_15598315_SNP [dm3] X_15704282_SNP [dm6]	C	G	2.633e^-4	0.668	NON_SYNONYMOUS_CODING CG8134 UPSTREAM Pis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	18777695	X_18777695_SNP [dm3] X_18883662_SNP [dm6]	G	A	2.633e^-4	0.668	UTR_3_PRIME CG34401 UPSTREAM CG7332
3L	6430988	3L_6430988_SNP [dm3] 3L_6437888_SNP [dm6]	T	A	2.645e^-4	0.668	INTRON CG42747
2L	18347659	2L_18347659_SNP [dm3] 2L_18347659_SNP [dm6]	C	A	2.646e^-4	0.668	INTRON Fas3
2R	19134251	2R_19134251_SNP [dm3] 2R_23246728_SNP [dm6]	C	T	2.646e^-4	0.668	UTR_3_PRIME RpL22-like	TF binding site mE1_TFBS_cad
X	15594188	X_15594188_SNP [dm3] X_15700155_SNP [dm6]	A	T	2.646e^-4	0.668	DOWNSTREAM CG9240 & 1 other INTERGENIC
3L	7506865	3L_7506865_INS [dm3] 3L_7513765_INS [dm6]	A	AA	2.649e^-4	0.668	INTRON CG7546	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18347525	2L_18347525_SNP [dm3] 2L_18347525_SNP [dm6]	C	T	2.655e^-4	0.668	INTRON Fas3
2R	9367448	2R_9367448_INS [dm3] 2R_13479943_INS [dm6]	T	TGAGCGCT	2.656e^-4	0.668	INTRON arr
X	2236875	X_2236875_SNP [dm3] X_2342842_SNP [dm6]	T	G	2.658e^-4	0.668	INTRON phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8719363	3L_8719363_SNP [dm3] 3L_8726263_SNP [dm6]	G	A	2.665e^-4	0.668	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC
2L	5379071	2L_5379071_SNP [dm3] 2L_5379071_SNP [dm6]	G	T	2.670e^-4	0.668	DOWNSTREAM CR42850 INTERGENIC
3L	2120147	3L_2120147_SNP [dm3] 3L_2120147_SNP [dm6]	G	A	2.670e^-4	0.668	INTRON zormin
2R	2077831	2R_2077831_SNP [dm3] 2R_6190326_SNP [dm6]	C	T	2.671e^-4	0.668	UPSTREAM tRNA:N5:42Ad & 1 other INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1952092	3R_1952092_SNP [dm3] 3R_6126370_SNP [dm6]	G	A	2.674e^-4	0.668	DOWNSTREAM CR43486 & 1 other INTERGENIC
3L	7477409	3L_7477409_SNP [dm3] 3L_7484309_SNP [dm6]	C	T	2.679e^-4	0.668	INTERGENIC
3L	6170239	3L_6170239_SNP [dm3] 3L_6177139_SNP [dm6]	A	G	2.684e^-4	0.668	SYNONYMOUS_CODING CG7376
3R	8039717	3R_8039717_SNP [dm3] 3R_12213995_SNP [dm6]	C	G	2.691e^-4	0.668	UTR_3_PRIME CG4848 UPSTREAM CG14742
2L	4503748	2L_4503748_SNP [dm3] 2L_4503748_SNP [dm6]	T	C	2.691e^-4	0.668	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13925046	3R_13925046_SNP [dm3] 3R_18099324_SNP [dm6]	C	A	2.694e^-4	0.668	INTRON sr
3R	15191048	3R_15191048_SNP [dm3] 3R_19365326_SNP [dm6]	G	C	2.701e^-4	0.668	INTERGENIC
2L	14037365	2L_14037365_SNP [dm3] 2L_14037365_SNP [dm6]	G	A	2.701e^-4	0.668	EXON CR45284
3L	22864422	3L_22864422_DEL [dm3] 3L_22871322_DEL [dm6]	TG	T	2.703e^-4	0.668	UTR_5_PRIME Arf79F UPSTREAM Arf79F & 1 other INTRON Arf79F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	9150104	2R_9150104_DEL [dm3] 2R_13262599_DEL [dm6]	CGCAACGCTCTCGATTT...	C	2.714e^-4	0.668	UTR_5_PRIME CG42319 INTRON CG42319
2L	2420102	2L_2420102_SNP [dm3] 2L_2420102_SNP [dm6]	G	A	2.715e^-4	0.668	UPSTREAM CG34447 & 1 other INTERGENIC
2L	4087412	2L_4087412_SNP [dm3] 2L_4087412_SNP [dm6]	A	T	2.722e^-4	0.668	INTRON ed
2L	15173679	2L_15173679_SNP [dm3] 2L_15173679_SNP [dm6]	A	C	2.726e^-4	0.668	INTRON CG4168
2R	9251765	2R_9251765_SNP [dm3] 2R_13364260_SNP [dm6]	T	A	2.727e^-4	0.668	INTERGENIC
3R	4844180	3R_4844180_INS [dm3] 3R_9018458_INS [dm6]	G	GCTGCTG	2.730e^-4	0.668	CODON_INSERTION tgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9037052	3R_9037052_SNP [dm3] 3R_13211330_SNP [dm6]	G	A	2.732e^-4	0.668	INTRON CG8483
2L	6701526	2L_6701526_SNP [dm3] 2L_6701526_SNP [dm6]	A	T	2.734e^-4	0.668	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12121347	2L_12121347_SNP [dm3] 2L_12121347_SNP [dm6]	A	G	2.742e^-4	0.668	INTRON CG17211	TF binding site mE1_TFBS_sens
3R	17067033	3R_17067033_SNP [dm3] 3R_21241311_SNP [dm6]	T	A	2.745e^-4	0.668	INTERGENIC	regulatory region REDfly_CRMs
2L	18347703	2L_18347703_SNP [dm3] 2L_18347703_SNP [dm6]	A	T	2.748e^-4	0.668	INTRON Fas3
X	17206152	X_17206152_SNP [dm3] X_17312119_SNP [dm6]	T	G	2.751e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19007796	X_19007796_SNP [dm3] X_19113763_SNP [dm6]	T	C	2.752e^-4	0.668	INTERGENIC
2R	15066426	2R_15066426_SNP [dm3] 2R_19178921_SNP [dm6]	A	C	2.757e^-4	0.669	DOWNSTREAM CG10737 INTRON hppy	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	11906019	X_11906019_SNP [dm3] X_12011986_SNP [dm6]	G	T	2.765e^-4	0.669	UPSTREAM regucalcin INTRON CG1492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5678339	2L_5678339_INS [dm3] 2L_5678339_INS [dm6]	T	TATGT	2.766e^-4	0.669	UPSTREAM CG12511 INTERGENIC
3R	6722218	3R_6722218_SNP [dm3] 3R_10896496_SNP [dm6]	A	G	2.770e^-4	0.669	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	7490918	3L_7490918_SNP [dm3] 3L_7497818_SNP [dm6]	T	C	2.772e^-4	0.669	NON_SYNONYMOUS_CODING CG8539
2R	8532481	2R_8532481_SNP [dm3] 2R_12644976_SNP [dm6]	C	T	2.777e^-4	0.669	INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1605995	3L_1605995_SNP [dm3] 3L_1605995_SNP [dm6]	C	A	2.788e^-4	0.671	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad
3R	2181552	3R_2181552_SNP [dm3] 3R_6355830_SNP [dm6]	G	A	2.790e^-4	0.671	INTRON Pak
3L	6223320	3L_6223320_SNP [dm3] 3L_6230220_SNP [dm6]	C	A	2.793e^-4	0.671	INTERGENIC
3R	15628652	3R_15628652_SNP [dm3] 3R_19802930_SNP [dm6]	A	G	2.804e^-4	0.672	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5331534	3L_5331534_SNP [dm3] 3L_5338434_SNP [dm6]	G	A	2.812e^-4	0.673	INTERGENIC
X	7134731	X_7134731_SNP [dm3] X_7240698_SNP [dm6]	C	T	2.817e^-4	0.673	UTR_3_PRIME CG9650 INTRON CR44357
3R	2650613	3R_2650613_SNP [dm3] 3R_6824891_SNP [dm6]	G	T	2.818e^-4	0.673	UTR_3_PRIME Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	11200131	2L_11200131_SNP [dm3] 2L_11200131_SNP [dm6]	T	G	2.824e^-4	0.674	INTRON Ca-beta
3R	16776107	3R_16776107_SNP [dm3] 3R_20950385_SNP [dm6]	A	G	2.840e^-4	0.675	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl
2L	2544605	2L_2544605_SNP [dm3] 2L_2544605_SNP [dm6]	T	A	2.841e^-4	0.675	INTERGENIC
3L	7748099	3L_7748099_SNP [dm3] 3L_7754999_SNP [dm6]	A	T	2.843e^-4	0.675	UTR_3_PRIME CG7409 INTRON CG32373
2L	5936846	2L_5936846_SNP [dm3] 2L_5936846_SNP [dm6]	C	T	2.854e^-4	0.675	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4394955	2R_4394955_SNP [dm3] 2R_8507450_SNP [dm6]	T	A	2.855e^-4	0.675	INTRON mtt
X	12676985	X_12676985_SNP [dm3] X_12782952_SNP [dm6]	G	C	2.861e^-4	0.675	INTRON CG32647
3L	4419790	3L_4419790_SNP [dm3] 3L_4419790_SNP [dm6]	G	A	2.864e^-4	0.675	SYNONYMOUS_CODING DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18791766	2L_18791766_SNP [dm3] 2L_18791766_SNP [dm6]	G	T	2.864e^-4	0.675	INTRON ham	transposable element FlyBase
2R	9951563	2R_9951563_SNP [dm3] 2R_14064058_SNP [dm6]	A	T	2.866e^-4	0.675	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15873220	3R_15873220_SNP [dm3] 3R_20047498_SNP [dm6]	C	T	2.866e^-4	0.675	INTRON CG17193 & 2 others
2L	18404415	2L_18404415_SNP [dm3] 2L_18404415_SNP [dm6]	G	A	2.877e^-4	0.675	EXON CR44487
3R	17547447	3R_17547447_SNP [dm3] 3R_21721725_SNP [dm6]	C	T	2.879e^-4	0.675	INTRON CR44096	TF binding site BDTNP1_TFBS_da
2R	8519428	2R_8519428_SNP [dm3] 2R_12631923_SNP [dm6]	T	A	2.892e^-4	0.675	UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	6149552	X_6149552_SNP [dm3] X_6255519_SNP [dm6]	T	G	2.895e^-4	0.675	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12470396	2L_12470396_SNP [dm3] 2L_12470396_SNP [dm6]	C	A	2.899e^-4	0.675	INTRON bun
X	4918565	X_4918565_SNP [dm3] X_5024532_SNP [dm6]	C	T	2.900e^-4	0.675	INTRON CR44833
X	4918563	X_4918563_SNP [dm3] X_5024530_SNP [dm6]	C	T	2.900e^-4	0.675	INTRON CR44833
3L	12497198	3L_12497198_SNP [dm3] 3L_12504098_SNP [dm6]	C	T	2.901e^-4	0.675	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5936807	2L_5936807_SNP [dm3] 2L_5936807_SNP [dm6]	C	T	2.902e^-4	0.675	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19353469	3R_19353469_SNP [dm3] 3R_23527747_SNP [dm6]	G	A	2.903e^-4	0.675	UPSTREAM CG10175 INTRON CG10175
2L	12112873	2L_12112873_SNP [dm3] 2L_12112873_SNP [dm6]	G	T	2.909e^-4	0.675	DOWNSTREAM Phae2 INTERGENIC
2R	5282059	2R_5282059_SNP [dm3] 2R_9394554_SNP [dm6]	G	A	2.910e^-4	0.675	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8886631	3L_8886631_SNP [dm3] 3L_8893531_SNP [dm6]	C	G	2.920e^-4	0.677	SYNONYMOUS_CODING Mcm7 DOWNSTREAM TrpA1	TF binding site mE1_TFBS_sens
3L	10651165	3L_10651165_DEL [dm3] 3L_10658065_DEL [dm6]	AATTTTG	A	2.925e^-4	0.677	INTRON CG32066	TF binding site mE1_TFBS_Kr
3L	13486554	3L_13486554_SNP [dm3] 3L_13493454_SNP [dm6]	G	T	2.931e^-4	0.677	INTRON Tgi
2L	13261667	2L_13261667_SNP [dm3] 2L_13261667_SNP [dm6]	T	G	2.934e^-4	0.677	UTR_5_PRIME CG44085 INTRON CG44085
2R	16337505	2R_16337505_SNP [dm3] 2R_20450000_SNP [dm6]	G	A	2.938e^-4	0.677	INTRON CG12484	TF binding site mE1_TFBS_inv
X	20851982	X_20851982_SNP [dm3] X_20980955_SNP [dm6]	A	G	2.940e^-4	0.677	INTERGENIC
2L	3493664	2L_3493664_INS [dm3] 2L_3493664_INS [dm6]	T	GC	2.953e^-4	0.678	DOWNSTREAM tim INTERGENIC
X	2286515	X_2286515_INS [dm3] X_2392482_INS [dm6]	A	AAAAA	2.961e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8528217	2R_8528217_DEL [dm3] 2R_12640712_DEL [dm6]	TTA	T	2.965e^-4	0.678	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
2L	20550289	2L_20550289_SNP [dm3] 2L_20550289_SNP [dm6]	T	G	2.966e^-4	0.678	INTERGENIC
2L	12106153	2L_12106153_SNP [dm3] 2L_12106153_SNP [dm6]	G	A	2.968e^-4	0.678	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22006541	3L_22006541_SNP [dm3] 3L_22013441_SNP [dm6]	G	A	2.969e^-4	0.678	INTERGENIC
2R	13367189	2R_13367189_SNP [dm3] 2R_17479684_SNP [dm6]	A	T	2.974e^-4	0.678	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17419137	3L_17419137_SNP [dm3] 3L_17426037_SNP [dm6]	G	A	2.974e^-4	0.678	SYNONYMOUS_CODING CG7630 UPSTREAM Sec3 DOWNSTREAM CG33051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5286494	2R_5286494_SNP [dm3] 2R_9398989_SNP [dm6]	A	G	2.981e^-4	0.679	UPSTREAM l_2_k10201 & 1 other DOWNSTREAM CG33774 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	5858483	2R_5858483_SNP [dm3] 2R_9970978_SNP [dm6]	T	A	2.994e^-4	0.68	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	5858509	2R_5858509_SNP [dm3] 2R_9971004_SNP [dm6]	T	A	2.994e^-4	0.68	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9759218	3L_9759218_SNP [dm3] 3L_9766118_SNP [dm6]	T	C	3.009e^-4	0.682	INTRON CG8177
2L	12347085	2L_12347085_SNP [dm3] 2L_12347085_SNP [dm6]	C	T	3.010e^-4	0.682	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2L	6120629	2L_6120629_SNP [dm3] 2L_6120629_SNP [dm6]	G	T	3.021e^-4	0.684	UPSTREAM stai DOWNSTREAM CG31642 INTRON stai
3L	9904605	3L_9904605_SNP [dm3] 3L_9911505_SNP [dm6]	C	T	3.030e^-4	0.685	INTRON CG34356
2R	2113007	2R_2113007_DEL [dm3] 2R_6225502_DEL [dm6]	TT	T	3.043e^-4	0.687	UPSTREAM tomboy40 INTRON bin3
X	2992763	X_2992763_SNP [dm3] X_3098730_SNP [dm6]	T	A	3.047e^-4	0.688	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	18255825	X_18255825_SNP [dm3] X_18361792_SNP [dm6]	T	G	3.051e^-4	0.688	UTR_3_PRIME CG6106
3R	15878965	3R_15878965_SNP [dm3] 3R_20053243_SNP [dm6]	A	T	3.062e^-4	0.689	INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	17786930	2L_17786930_SNP [dm3] 2L_17786930_SNP [dm6]	C	G	3.071e^-4	0.69	DOWNSTREAM CadN2 INTERGENIC
3R	16798564	3R_16798564_SNP [dm3] 3R_20972842_SNP [dm6]	C	T	3.086e^-4	0.692	INTRON Atpalpha	TF binding site mE1_TFBS_sens
2L	4207380	2L_4207380_SNP [dm3] 2L_4207380_SNP [dm6]	A	G	3.089e^-4	0.692	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9692435	3R_9692435_SNP [dm3] 3R_13866713_SNP [dm6]	C	A	3.092e^-4	0.692	DOWNSTREAM E5 INTERGENIC
3R	24431602	3R_24431602_SNP [dm3] 3R_28605880_SNP [dm6]	A	T	3.093e^-4	0.692	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11666269	2R_11666269_SNP [dm3] 2R_15778764_SNP [dm6]	A	T	3.096e^-4	0.692	INTRON Zasp52
2L	14039486	2L_14039486_SNP [dm3] 2L_14039486_SNP [dm6]	A	C	3.106e^-4	0.693	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11594175	3L_11594175_SNP [dm3] 3L_11601075_SNP [dm6]	A	G	3.106e^-4	0.693	UPSTREAM CG7368 INTRON CG7368
3R	21459162	3R_21459162_SNP [dm3] 3R_25633440_SNP [dm6]	T	G	3.121e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	6149806	X_6149806_SNP [dm3] X_6255773_SNP [dm6]	A	G	3.122e^-4	0.694	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12362442	2L_12362442_SNP [dm3] 2L_12362442_SNP [dm6]	G	T	3.124e^-4	0.694	INTRON bru-2
2L	17579075	2L_17579075_SNP [dm3] 2L_17579075_SNP [dm6]	C	T	3.132e^-4	0.695	UPSTREAM CR45698 INTERGENIC
2R	8514302	2R_8514302_SNP [dm3] 2R_12626797_SNP [dm6]	C	A	3.134e^-4	0.695	UTR_5_PRIME CG17760
2L	14934760	2L_14934760_SNP [dm3] 2L_14934760_SNP [dm6]	C	T	3.144e^-4	0.696	INTRON CG42313
X	6149817	X_6149817_SNP [dm3] X_6255784_SNP [dm6]	G	T	3.146e^-4	0.696	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6429046	3L_6429046_SNP [dm3] 3L_6435946_SNP [dm6]	G	A	3.152e^-4	0.696	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	7686584	3R_7686584_SNP [dm3] 3R_11860862_SNP [dm6]	T	G	3.155e^-4	0.696	INTRON CG6959
3L	11594171	3L_11594171_SNP [dm3] 3L_11601071_SNP [dm6]	A	T	3.157e^-4	0.696	UPSTREAM CG7368 INTRON CG7368
3L	6981653	3L_6981653_SNP [dm3] 3L_6988553_SNP [dm6]	A	C	3.168e^-4	0.697	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11594211	3L_11594211_SNP [dm3] 3L_11601111_SNP [dm6]	T	C	3.179e^-4	0.699	UPSTREAM CG7368 INTRON CG7368
2R	2351543	2R_2351543_SNP [dm3] 2R_6464038_SNP [dm6]	A	C	3.184e^-4	0.699	INTERGENIC	transposable element FlyBase
2L	19407683	2L_19407683_DEL [dm3] 2L_19407683_DEL [dm6]	CTAATC	C	3.189e^-4	0.699	INTRON Pax
X	11814812	X_11814812_SNP [dm3] X_11920779_SNP [dm6]	C	T	3.194e^-4	0.7	SYNONYMOUS_CODING Sclp UPSTREAM CR32660 DOWNSTREAM Sclp	TF binding site mE1_TFBS_Trl
3R	18750922	3R_18750922_SNP [dm3] 3R_22925200_SNP [dm6]	C	T	3.209e^-4	0.701	DOWNSTREAM CG6660 INTRON klg
2R	8114216	2R_8114216_SNP [dm3] 2R_12226711_SNP [dm6]	A	C	3.210e^-4	0.701	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2R	15786184	2R_15786184_SNP [dm3] 2R_19898679_SNP [dm6]	T	C	3.217e^-4	0.701	EXON CR44572
2R	8428754	2R_8428754_SNP [dm3] 2R_12541249_SNP [dm6]	A	G	3.221e^-4	0.701	INTRON fra	TF binding site mE1_TFBS_cad
2L	20536317	2L_20536317_SNP [dm3] 2L_20536317_SNP [dm6]	T	A	3.224e^-4	0.701	INTERGENIC
2L	18346473	2L_18346473_SNP [dm3] 2L_18346473_SNP [dm6]	C	A	3.224e^-4	0.701	INTRON Fas3
2L	15980170	2L_15980170_SNP [dm3] 2L_15980170_SNP [dm6]	C	G	3.230e^-4	0.701	UTR_3_PRIME CG10839 INTRON CG10839
2L	14878827	2L_14878827_DEL [dm3] 2L_14878827_DEL [dm6]	ACTCCTCCTATACCTTC...	A	3.231e^-4	0.701	DOWNSTREAM Mst35Ba INTERGENIC
2L	7010044	2L_7010044_SNP [dm3] 2L_7010044_SNP [dm6]	G	A	3.233e^-4	0.701	UPSTREAM uif INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24244261	3R_24244261_SNP [dm3] 3R_28418539_SNP [dm6]	T	A	3.241e^-4	0.701	UTR_5_PRIME beat-VI	TF binding site mE1_TFBS_HSA
3R	15628342	3R_15628342_SNP [dm3] 3R_19802620_SNP [dm6]	C	T	3.245e^-4	0.701	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12363515	X_12363515_SNP [dm3] X_12469482_SNP [dm6]	C	A	3.247e^-4	0.701	INTRON CG42258
X	6149788	X_6149788_SNP [dm3] X_6255755_SNP [dm6]	C	T	3.248e^-4	0.701	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3048644	3R_3048644_DEL [dm3] 3R_7222922_DEL [dm6]	TC	T	3.282e^-4	0.707	INTERGENIC
3L	9811471	3L_9811471_SNP [dm3] 3L_9818371_SNP [dm6]	A	G	3.283e^-4	0.707	UPSTREAM CG43897 INTRON CG43897	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7990181	3R_7990181_SNP [dm3] 3R_12164459_SNP [dm6]	C	A	3.289e^-4	0.707	SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12535576	2L_12535576_SNP [dm3] 2L_12535576_SNP [dm6]	T	C	3.295e^-4	0.707	INTRON bun
3L	18205018	3L_18205018_SNP [dm3] 3L_18211918_SNP [dm6]	G	A	3.304e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_cnc
X	4446153	X_4446153_SNP [dm3] X_4552120_SNP [dm6]	C	G	3.306e^-4	0.707	SYNONYMOUS_CODING CG3527 UPSTREAM CG11436 DOWNSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3887443	2R_3887443_SNP [dm3] 2R_7999938_SNP [dm6]	T	A	3.319e^-4	0.707	DOWNSTREAM CG11191 INTERGENIC
3R	13169425	3R_13169425_SNP [dm3] 3R_17343703_SNP [dm6]	T	A	3.323e^-4	0.707	INTRON beat-IIa
3L	11117491	3L_11117491_SNP [dm3] 3L_11124391_SNP [dm6]	G	C	3.324e^-4	0.707	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	19134153	2R_19134153_SNP [dm3] 2R_23246630_SNP [dm6]	G	A	3.327e^-4	0.707	UTR_3_PRIME RpL22-like
3R	13925050	3R_13925050_SNP [dm3] 3R_18099328_SNP [dm6]	G	C	3.330e^-4	0.707	INTRON sr
3R	1807081	3R_1807081_SNP [dm3] 3R_5981359_SNP [dm6]	G	C	3.330e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6958168	2L_6958168_SNP [dm3] 2L_6958168_SNP [dm6]	C	T	3.332e^-4	0.707	SYNONYMOUS_CODING CG3430 DOWNSTREAM Atac1
2R	15066416	2R_15066416_SNP [dm3] 2R_19178911_SNP [dm6]	T	A	3.333e^-4	0.707	DOWNSTREAM CG10737 INTRON hppy	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15032466	3L_15032466_SNP [dm3] 3L_15039366_SNP [dm6]	T	C	3.337e^-4	0.707	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16394948	2L_16394948_INS [dm3] 2L_16394948_INS [dm6]	C	CGCCCAATTTTGGCCCCAAT...	3.338e^-4	0.707	INTERGENIC
2R	14359948	2R_14359948_SNP [dm3] 2R_18472443_SNP [dm6]	G	C	3.353e^-4	0.709	INTRON CG30116
X	17206094	X_17206094_SNP [dm3] X_17312061_SNP [dm6]	A	G	3.360e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15878812	3R_15878812_SNP [dm3] 3R_20053090_SNP [dm6]	G	C	3.365e^-4	0.709	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
X	1002083	X_1002083_INS [dm3] X_1108050_INS [dm6]	T	TT	3.367e^-4	0.709	INTRON CG3655
X	2249375	X_2249375_DEL [dm3] X_2355342_DEL [dm6]	AATT	A	3.372e^-4	0.709	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	14365528	3R_14365528_SNP [dm3] 3R_18539806_SNP [dm6]	A	T	3.373e^-4	0.709	INTRON fru
X	13478641	X_13478641_SNP [dm3] X_13584608_SNP [dm6]	T	C	3.383e^-4	0.709	INTRON Tango13
2L	14000399	2L_14000399_SNP [dm3] 2L_14000399_SNP [dm6]	A	T	3.383e^-4	0.709	INTRON rk
3L	16059610	3L_16059610_SNP [dm3] 3L_16066510_SNP [dm6]	C	A	3.385e^-4	0.709	INTRON Mbs
X	17206209	X_17206209_SNP [dm3] X_17312176_SNP [dm6]	G	T	3.392e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14036429	2L_14036429_SNP [dm3] 2L_14036429_SNP [dm6]	C	T	3.394e^-4	0.709	EXON CR45284
3L	7506891	3L_7506891_SNP [dm3] 3L_7513791_SNP [dm6]	C	T	3.394e^-4	0.709	INTRON CG7546	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25144604	3R_25144604_SNP [dm3] 3R_29318882_SNP [dm6]	A	G	3.406e^-4	0.71	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4021757	2L_4021757_SNP [dm3] 2L_4021757_SNP [dm6]	T	G	3.409e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	17500776	2L_17500776_SNP [dm3] 2L_17500776_SNP [dm6]	G	A	3.411e^-4	0.71	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6164811	3L_6164811_SNP [dm3] 3L_6171711_SNP [dm6]	G	T	3.424e^-4	0.71	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2458447	3L_2458447_SNP [dm3] 3L_2458447_SNP [dm6]	T	C	3.425e^-4	0.71	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14117045	2R_14117045_SNP [dm3] 2R_18229540_SNP [dm6]	C	A	3.425e^-4	0.71	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6168368	3L_6168368_SNP [dm3] 3L_6175268_SNP [dm6]	T	A	3.429e^-4	0.71	NON_SYNONYMOUS_CODING CG7376	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15066067	2R_15066067_SNP [dm3] 2R_19178562_SNP [dm6]	C	A	3.431e^-4	0.71	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14939667	2L_14939667_SNP [dm3] 2L_14939667_SNP [dm6]	T	G	3.437e^-4	0.71	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	2602053	2L_2602053_SNP [dm3] 2L_2602053_SNP [dm6]	C	A	3.438e^-4	0.71	UPSTREAM CR44789 INTERGENIC
2R	8897087	2R_8897087_SNP [dm3] 2R_13009582_SNP [dm6]	C	T	3.438e^-4	0.71	INTERGENIC
3L	2133540	3L_2133540_SNP [dm3] 3L_2133540_SNP [dm6]	T	A	3.459e^-4	0.712	INTRON zormin
3L	2133544	3L_2133544_DEL [dm3] 3L_2133544_DEL [dm6]	AT	A	3.459e^-4	0.712	INTRON zormin
2L	14278062	2L_14278062_SNP [dm3] 2L_14278062_SNP [dm6]	G	A	3.460e^-4	0.712	DOWNSTREAM CG32971 INTRON wb
2R	15786903	2R_15786903_SNP [dm3] 2R_19899398_SNP [dm6]	C	T	3.469e^-4	0.712	UPSTREAM CR44572 INTERGENIC
3R	16007105	3R_16007105_SNP [dm3] 3R_20181383_SNP [dm6]	G	C	3.474e^-4	0.712	INTERGENIC
X	12404217	X_12404217_SNP [dm3] X_12510184_SNP [dm6]	A	T	3.476e^-4	0.712	INTRON CG2556
X	2992580	X_2992580_SNP [dm3] X_3098547_SNP [dm6]	G	A	3.482e^-4	0.712	INTRON kirre	regulatory region REDfly_CRMs
3L	6133004	3L_6133004_SNP [dm3] 3L_6139904_SNP [dm6]	C	T	3.486e^-4	0.712	UTR_5_PRIME Cpr65Av
3L	8719344	3L_8719344_SNP [dm3] 3L_8726244_SNP [dm6]	T	C	3.489e^-4	0.712	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC
3L	6656124	3L_6656124_SNP [dm3] 3L_6663024_SNP [dm6]	C	T	3.491e^-4	0.712	INTERGENIC
3L	9987566	3L_9987566_SNP [dm3] 3L_9994466_SNP [dm6]	C	G	3.493e^-4	0.712	INTRON dpr6
2L	4454524	2L_4454524_SNP [dm3] 2L_4454524_SNP [dm6]	T	A	3.493e^-4	0.712	UPSTREAM CG15434 & 1 other DOWNSTREAM Gs1l INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	7490386	3L_7490386_SNP [dm3] 3L_7497286_SNP [dm6]	T	C	3.500e^-4	0.712	UTR_3_PRIME CG8539
3L	16463815	3L_16463815_SNP [dm3] 3L_16470715_SNP [dm6]	C	T	3.503e^-4	0.712	UTR_3_PRIME aos INTRON CG33158
2L	15031061	2L_15031061_SNP [dm3] 2L_15031061_SNP [dm6]	C	A	3.508e^-4	0.713	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
2L	12121353	2L_12121353_SNP [dm3] 2L_12121353_SNP [dm6]	A	G	3.515e^-4	0.713	INTRON CG17211	TF binding site mE1_TFBS_sens
3R	7044854	3R_7044854_SNP [dm3] 3R_11219132_SNP [dm6]	T	C	3.538e^-4	0.715	NON_SYNONYMOUS_CODING CG6689	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11595984	3L_11595984_SNP [dm3] 3L_11602884_SNP [dm6]	A	C	3.548e^-4	0.715	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	10398397	3L_10398397_SNP [dm3] 3L_10405297_SNP [dm6]	A	T	3.552e^-4	0.715	INTERGENIC
3R	9665526	3R_9665526_SNP [dm3] 3R_13839804_SNP [dm6]	G	A	3.553e^-4	0.715	UTR_5_PRIME CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12121354	2L_12121354_SNP [dm3] 2L_12121354_SNP [dm6]	T	C	3.560e^-4	0.715	INTRON CG17211	TF binding site mE1_TFBS_sens
3R	15877513	3R_15877513_SNP [dm3] 3R_20051791_SNP [dm6]	A	G	3.563e^-4	0.715	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	2175295	3L_2175295_SNP [dm3] 3L_2175295_SNP [dm6]	A	G	3.563e^-4	0.715	UPSTREAM CG15820 INTERGENIC
3L	6743030	3L_6743030_SNP [dm3] 3L_6749930_SNP [dm6]	A	T	3.568e^-4	0.715	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12115239	2L_12115239_SNP [dm3] 2L_12115239_SNP [dm6]	G	C	3.568e^-4	0.715	INTRON CG17211
2L	4499539	2L_4499539_SNP [dm3] 2L_4499539_SNP [dm6]	C	A	3.579e^-4	0.715	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	882829	2L_882829_SNP [dm3] 2L_882829_SNP [dm6]	C	T	3.586e^-4	0.715	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	8520947	2R_8520947_SNP [dm3] 2R_12633442_SNP [dm6]	G	C	3.590e^-4	0.715	NON_SYNONYMOUS_CODING CG33792 UPSTREAM spt4 DOWNSTREAM CG33671 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3R	6725454	3R_6725454_SNP [dm3] 3R_10899732_SNP [dm6]	C	T	3.595e^-4	0.715	INTERGENIC
2L	12111792	2L_12111792_SNP [dm3] 2L_12111792_SNP [dm6]	C	T	3.597e^-4	0.715	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
2R	18824900	2R_18824900_SNP [dm3] 2R_22937377_SNP [dm6]	A	T	3.599e^-4	0.715	UPSTREAM CG3800 & 1 other INTRON CG9849	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14056127	3R_14056127_SNP [dm3] 3R_18230405_SNP [dm6]	G	A	3.607e^-4	0.715	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	13023895	3L_13023895_DEL [dm3] 3L_13030795_DEL [dm6]	AAA	A	3.609e^-4	0.715	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1249100	2L_1249100_SNP [dm3] 2L_1249100_SNP [dm6]	T	A	3.609e^-4	0.715	INTERGENIC
2L	18816258	2L_18816258_SNP [dm3] 2L_18816258_SNP [dm6]	T	A	3.617e^-4	0.715	INTERGENIC
X	5895099	X_5895099_SNP [dm3] X_6001066_SNP [dm6]	T	G	3.622e^-4	0.715	UPSTREAM CR44498 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15752460	3L_15752460_SNP [dm3] 3L_15759360_SNP [dm6]	G	T	3.624e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11138988	3L_11138988_SNP [dm3] 3L_11145888_SNP [dm6]	A	G	3.629e^-4	0.715	INTRON CG32082
3R	13773784	3R_13773784_SNP [dm3] 3R_17948062_SNP [dm6]	C	G	3.630e^-4	0.715	INTRON cpo
3L	5912054	3L_5912054_SNP [dm3] 3L_5918954_SNP [dm6]	A	G	3.630e^-4	0.715	INTRON CG10483 EXON CR45167
X	16615943	X_16615943_SNP [dm3] X_16721910_SNP [dm6]	G	C	3.631e^-4	0.715	UPSTREAM CG34325 INTRON CG32572
2R	8519402	2R_8519402_SNP [dm3] 2R_12631897_SNP [dm6]	A	T	3.635e^-4	0.715	UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15890634	3R_15890634_SNP [dm3] 3R_20064912_SNP [dm6]	C	T	3.637e^-4	0.715	INTERGENIC
X	5739234	X_5739234_SNP [dm3] X_5845201_SNP [dm6]	T	A	3.637e^-4	0.715	UPSTREAM CG12729 INTERGENIC
2L	11351515	2L_11351515_SNP [dm3] 2L_11351515_SNP [dm6]	A	T	3.640e^-4	0.715	INTERGENIC	regulatory region REDfly_CRMs
2R	9951799	2R_9951799_SNP [dm3] 2R_14064294_SNP [dm6]	A	G	3.643e^-4	0.715	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19134090	2R_19134090_DEL [dm3] 2R_23246567_DEL [dm6]	ACATA	A	3.648e^-4	0.715	DOWNSTREAM RpL22-like INTERGENIC
3L	7491188	3L_7491188_SNP [dm3] 3L_7498088_SNP [dm6]	T	C	3.649e^-4	0.715	SYNONYMOUS_CODING CG8539
3L	18749635	3L_18749635_SNP [dm3] 3L_18756535_SNP [dm6]	T	G	3.649e^-4	0.715	INTRON ftz-f1
2L	18357943	2L_18357943_SNP [dm3] 2L_18357943_SNP [dm6]	T	C	3.654e^-4	0.715	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2R	6335093	2R_6335093_SNP [dm3] 2R_10447588_SNP [dm6]	T	C	3.675e^-4	0.718	INTRON Galphao
2L	18371732	2L_18371732_SNP [dm3] 2L_18371732_SNP [dm6]	T	C	3.685e^-4	0.718	INTRON Fas3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19006443	X_19006443_SNP [dm3] X_19112410_SNP [dm6]	A	C	3.690e^-4	0.718	INTERGENIC
2R	16920950	2R_16920950_SNP [dm3] 2R_21033445_SNP [dm6]	G	T	3.691e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16681736	X_16681736_SNP [dm3] X_16787703_SNP [dm6]	A	C	3.694e^-4	0.718	UTR_5_PRIME Sap30 UPSTREAM Sap30 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	20556798	2L_20556798_SNP [dm3] 2L_20556798_SNP [dm6]	T	C	3.697e^-4	0.718	INTERGENIC
3R	1791849	3R_1791849_SNP [dm3] 3R_5966127_SNP [dm6]	T	A	3.699e^-4	0.718	EXON CR44925
2L	20847464	2L_20847464_SNP [dm3] 2L_20847464_SNP [dm6]	T	A	3.716e^-4	0.718	DOWNSTREAM CR44307 INTRON CG31676
X	15594715	X_15594715_SNP [dm3] X_15700682_SNP [dm6]	G	A	3.717e^-4	0.718	SYNONYMOUS_CODING CG9240 DOWNSTREAM CG8128 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13351633	2L_13351633_SNP [dm3] 2L_13351633_SNP [dm6]	A	T	3.718e^-4	0.718	INTRON CG9395
2L	6955240	2L_6955240_SNP [dm3] 2L_6955240_SNP [dm6]	T	C	3.721e^-4	0.718	DOWNSTREAM SA INTRON CG13775	TF binding site mE1_TFBS_sens
X	16615912	X_16615912_SNP [dm3] X_16721879_SNP [dm6]	A	T	3.721e^-4	0.718	UPSTREAM CG34325 INTRON CG32572
3L	6877016	3L_6877016_SNP [dm3] 3L_6883916_SNP [dm6]	C	T	3.727e^-4	0.718	UPSTREAM CR45416 INTERGENIC
3L	6197240	3L_6197240_SNP [dm3] 3L_6204140_SNP [dm6]	A	G	3.727e^-4	0.718	UTR_3_PRIME LanA DOWNSTREAM CG8219	TF binding site mE1_TFBS_cad
X	11813085	X_11813085_SNP [dm3] X_11919052_SNP [dm6]	A	C	3.729e^-4	0.718	UPSTREAM CR32661 DOWNSTREAM CR43157 & 2 others INTERGENIC
2R	9229092	2R_9229092_SNP [dm3] 2R_13341587_SNP [dm6]	A	G	3.733e^-4	0.718	INTRON CR44206
3L	10394623	3L_10394623_SNP [dm3] 3L_10401523_SNP [dm6]	A	G	3.736e^-4	0.718	INTERGENIC
2R	8491046	2R_8491046_SNP [dm3] 2R_12603541_SNP [dm6]	T	A	3.737e^-4	0.718	INTRON Amph
2R	5305007	2R_5305007_SNP [dm3] 2R_9417502_SNP [dm6]	C	T	3.745e^-4	0.719	SYNONYMOUS_CODING wun2
2L	14720386	2L_14720386_MNP [dm3] 2L_14720386_MNP [dm6]	AAA	TTT	3.763e^-4	0.72	INTERGENIC
3L	6133066	3L_6133066_SNP [dm3] 3L_6139966_SNP [dm6]	A	G	3.764e^-4	0.72	UTR_5_PRIME Cpr65Av
2L	14941331	2L_14941331_SNP [dm3] 2L_14941331_SNP [dm6]	C	T	3.767e^-4	0.72	INTRON CG42313
2L	7336965	2L_7336965_SNP [dm3] 2L_7336965_SNP [dm6]	C	T	3.773e^-4	0.72	INTRON Wnt6
X	20948366	X_20948366_SNP [dm3] X_21077339_SNP [dm6]	T	A	3.777e^-4	0.72	UTR_3_PRIME bves INTRON bves
3R	15878803	3R_15878803_SNP [dm3] 3R_20053081_SNP [dm6]	T	A	3.780e^-4	0.72	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
X	15597824	X_15597824_SNP [dm3] X_15703791_SNP [dm6]	A	G	3.783e^-4	0.72	UPSTREAM CG8134 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	2172056	3R_2172056_SNP [dm3] 3R_6346334_SNP [dm6]	T	C	3.790e^-4	0.72	NON_SYNONYMOUS_CODING CG18048 UPSTREAM SmD2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14719427	3R_14719427_SNP [dm3] 3R_18893705_SNP [dm6]	G	A	3.796e^-4	0.72	INTERGENIC
2L	16467027	2L_16467027_SNP [dm3] 2L_16467027_SNP [dm6]	G	T	3.799e^-4	0.72	UTR_3_PRIME dac	regulatory region REDfly_CRMs
3R	15878776	3R_15878776_SNP [dm3] 3R_20053054_SNP [dm6]	A	G	3.800e^-4	0.72	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
3L	10396471	3L_10396471_DEL [dm3] 3L_10403371_DEL [dm6]	TAAG	T	3.802e^-4	0.72	INTERGENIC
3L	5220257	3L_5220257_SNP [dm3] 3L_5227157_SNP [dm6]	C	G	3.805e^-4	0.72	INTRON shep
2L	18816249	2L_18816249_SNP [dm3] 2L_18816249_SNP [dm6]	C	T	3.805e^-4	0.72	INTERGENIC
3R	10238987	3R_10238987_SNP [dm3] 3R_14413265_SNP [dm6]	C	A	3.809e^-4	0.72	INTRON cv-c	TF binding site BDTNP1_TFBS_prd
2L	18537238	2L_18537238_SNP [dm3] 2L_18537238_SNP [dm6]	T	C	3.816e^-4	0.72	SYNONYMOUS_CODING Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20266305	X_20266305_SNP [dm3] X_20395278_SNP [dm6]	C	A	3.822e^-4	0.72	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14019111	2L_14019111_SNP [dm3] 2L_14019111_SNP [dm6]	A	T	3.826e^-4	0.72	UTR_3_PRIME bgm UPSTREAM CR44849 DOWNSTREAM NimC3	TF binding site mE1_TFBS_cad
X	2830071	X_2830071_DEL [dm3] X_2936038_DEL [dm6]	GGAATTCTATTCAGCAT...	A	3.827e^-4	0.72	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
3L	11336244	3L_11336244_SNP [dm3] 3L_11343144_SNP [dm6]	C	G	3.833e^-4	0.72	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	22022332	3L_22022332_SNP [dm3] 3L_22029232_SNP [dm6]	G	A	3.833e^-4	0.72	UPSTREAM CG7140 & 1 other DOWNSTREAM CG43392 INTERGENIC
2L	13079330	2L_13079330_SNP [dm3] 2L_13079330_SNP [dm6]	T	A	3.837e^-4	0.72	INTERGENIC
X	15597998	X_15597998_SNP [dm3] X_15703965_SNP [dm6]	G	A	3.844e^-4	0.721	UPSTREAM CG8134 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.339e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01284

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	7.5515	0.0229

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1758 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	17364049	3L_17364049_SNP [dm3] 3L_17370949_SNP [dm6]	C	T	9.514e^-8	0.109	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17363866	3L_17363866_SNP [dm3] 3L_17370766_SNP [dm6]	C	T	1.165e^-7	0.109	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17364361	3L_17364361_SNP [dm3] 3L_17371261_SNP [dm6]	T	C	1.870e^-7	0.117	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15031280	2R_15031280_DEL [dm3] 2R_19143775_DEL [dm6]	AGAA	A	3.379e^-7	0.152	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9978185	X_9978185_SNP [dm3] X_10084152_SNP [dm6]	A	G	4.764e^-7	0.152	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17363309	3L_17363309_SNP [dm3] 3L_17370209_SNP [dm6]	C	T	4.879e^-7	0.152	INTRON Cad74A
3L	17364968	3L_17364968_INS [dm3] 3L_17371868_INS [dm6]	A	ATA	8.067e^-7	0.19	INTRON Cad74A
3L	17364939	3L_17364939_SNP [dm3] 3L_17371839_SNP [dm6]	A	G	8.429e^-7	0.19	SPLICE_SITE_REGION Cad74A INTRON Cad74A
2L	16379210	2L_16379210_SNP [dm3] 2L_16379210_SNP [dm6]	A	C	9.135e^-7	0.19	INTERGENIC
3L	17363081	3L_17363081_SNP [dm3] 3L_17369981_SNP [dm6]	C	T	1.165e^-6	0.2	SYNONYMOUS_CODING Cad74A
3L	3222348	3L_3222348_SNP [dm3] 3L_3222348_SNP [dm6]	C	T	1.171e^-6	0.2	UPSTREAM snoRNA:Or-CD12 & 5 others DOWNSTREAM snoRNA:Or-CD11a INTRON RpL28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15031184	2R_15031184_SNP [dm3] 2R_19143679_SNP [dm6]	T	A	1.647e^-6	0.257	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	3222465	3L_3222465_SNP [dm3] 3L_3222465_SNP [dm6]	T	G	1.997e^-6	0.279	UTR_5_PRIME RpL28 UPSTREAM snoRNA:Me28S-C3351 & 4 others DOWNSTREAM snoRNA:Or-CD11a INTRON RpL28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16064013	X_16064013_SNP [dm3] X_16169980_SNP [dm6]	A	T	2.086e^-6	0.279	INTERGENIC
2R	13644951	2R_13644951_DEL [dm3] 2R_17757446_DEL [dm6]	CGACTCACAGATT...	C	2.274e^-6	0.284	UTR_5_PRIME HLH54F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17363427	3L_17363427_SNP [dm3] 3L_17370327_SNP [dm6]	A	G	2.503e^-6	0.293	SYNONYMOUS_CODING Cad74A
2R	15031186	2R_15031186_SNP [dm3] 2R_19143681_SNP [dm6]	T	A	2.721e^-6	0.3	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15084283	3R_15084283_SNP [dm3] 3R_19258561_SNP [dm6]	T	C	3.229e^-6	0.336	SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	17360782	3L_17360782_SNP [dm3] 3L_17367682_SNP [dm6]	C	G	3.655e^-6	0.337	DOWNSTREAM Cad74A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6525332	2R_6525332_SNP [dm3] 2R_10637827_SNP [dm6]	C	A	3.775e^-6	0.337	INTRON CG11883	TF binding site mE1_TFBS_cad
2R	6525343	2R_6525343_SNP [dm3] 2R_10637838_SNP [dm6]	A	T	3.775e^-6	0.337	INTRON CG11883	TF binding site mE1_TFBS_cad
X	16063952	X_16063952_SNP [dm3] X_16169919_SNP [dm6]	A	G	5.041e^-6	0.43	INTERGENIC
X	16063953	X_16063953_SNP [dm3] X_16169920_SNP [dm6]	G	A	5.315e^-6	0.433	INTERGENIC
3R	22321604	3R_22321604_SNP [dm3] 3R_26495882_SNP [dm6]	G	T	5.706e^-6	0.446	INTRON plum
3L	17363419	3L_17363419_SNP [dm3] 3L_17370319_SNP [dm6]	T	G	6.484e^-6	0.486	SYNONYMOUS_CODING Cad74A
2L	6701526	2L_6701526_SNP [dm3] 2L_6701526_SNP [dm6]	A	T	8.262e^-6	0.59	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8533471	2R_8533471_SNP [dm3] 2R_12645966_SNP [dm6]	T	C	8.951e^-6	0.59	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	9.128e^-6	0.59	INTERGENIC
2L	19236098	2L_19236098_SNP [dm3] 2L_19236098_SNP [dm6]	G	A	9.413e^-6	0.59	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17360766	3L_17360766_SNP [dm3] 3L_17367666_SNP [dm6]	G	T	9.577e^-6	0.59	DOWNSTREAM Cad74A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17366240	3L_17366240_SNP [dm3] 3L_17373140_SNP [dm6]	G	A	9.964e^-6	0.59	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17364901	3L_17364901_SNP [dm3] 3L_17371801_SNP [dm6]	C	T	1.007e^-5	0.59	SYNONYMOUS_CODING Cad74A
2L	5625299	2L_5625299_SNP [dm3] 2L_5625299_SNP [dm6]	T	C	1.119e^-5	0.61	DOWNSTREAM CG31646 INTERGENIC
2L	1831524	2L_1831524_SNP [dm3] 2L_1831524_SNP [dm6]	T	C	1.122e^-5	0.61	DOWNSTREAM c-cup & 1 other INTERGENIC
2R	13203403	2R_13203403_SNP [dm3] 2R_17315898_SNP [dm6]	T	G	1.146e^-5	0.61	INTRON mbl
3R	22282152	3R_22282152_SNP [dm3] 3R_26456430_SNP [dm6]	G	T	1.171e^-5	0.61	UPSTREAM CG14237 & 1 other INTERGENIC
2L	12380907	2L_12380907_SNP [dm3] 2L_12380907_SNP [dm6]	A	T	1.212e^-5	0.612	INTRON bru-2
X	10147103	X_10147103_SNP [dm3] X_10253070_SNP [dm6]	C	T	1.256e^-5	0.612	INTRON Hk
2R	15182989	2R_15182989_SNP [dm3] 2R_19295484_SNP [dm6]	G	A	1.299e^-5	0.612	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17366351	3L_17366351_SNP [dm3] 3L_17373251_SNP [dm6]	C	T	1.305e^-5	0.612	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17366189	3L_17366189_SNP [dm3] 3L_17373089_SNP [dm6]	T	C	1.373e^-5	0.628	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	1.455e^-5	0.65	INTERGENIC
3L	12975724	3L_12975724_SNP [dm3] 3L_12982624_SNP [dm6]	A	C	1.499e^-5	0.653	INTERGENIC
2R	15669076	2R_15669076_SNP [dm3] 2R_19781571_SNP [dm6]	G	A	1.532e^-5	0.653	INTERGENIC
3L	17366324	3L_17366324_SNP [dm3] 3L_17373224_SNP [dm6]	T	C	1.572e^-5	0.654	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5285694	3R_5285694_SNP [dm3] 3R_9459972_SNP [dm6]	T	A	1.627e^-5	0.654	UPSTREAM GstZ2 INTRON GstZ2	regulatory region REDfly_CRMs
X	10147104	X_10147104_SNP [dm3] X_10253071_SNP [dm6]	G	A	1.645e^-5	0.654	INTRON Hk
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	1.675e^-5	0.654	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	15677896	2R_15677896_SNP [dm3] 2R_19790391_SNP [dm6]	G	A	1.911e^-5	0.712	DOWNSTREAM CR45231 INTERGENIC
X	2269619	X_2269619_SNP [dm3] X_2375586_SNP [dm6]	A	G	1.914e^-5	0.712	DOWNSTREAM PsGEF INTRON PsGEF
2L	8086299	2L_8086299_SNP [dm3] 2L_8086299_SNP [dm6]	C	A	1.994e^-5	0.712	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
2L	8086302	2L_8086302_SNP [dm3] 2L_8086302_SNP [dm6]	G	T	1.994e^-5	0.712	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
3L	17360630	3L_17360630_SNP [dm3] 3L_17367530_SNP [dm6]	T	A	2.014e^-5	0.712	DOWNSTREAM Cad74A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17867506	2R_17867506_SNP [dm3] 2R_21980001_SNP [dm6]	G	A	2.072e^-5	0.719	NON_SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	22750380	3R_22750380_SNP [dm3] 3R_26924658_SNP [dm6]	A	T	2.155e^-5	0.734	START_GAINED sda UTR_5_PRIME sda
2L	1836861	2L_1836861_SNP [dm3] 2L_1836861_SNP [dm6]	C	T	2.217e^-5	0.734	INTRON wry
2L	5548223	2L_5548223_SNP [dm3] 2L_5548223_SNP [dm6]	C	T	2.293e^-5	0.734	SYNONYMOUS_CODING Oscillin	TF binding site BDTNP1_TFBS_z
3R	6458776	3R_6458776_SNP [dm3] 3R_10633054_SNP [dm6]	G	A	2.336e^-5	0.734	INTRON hth	TF binding site mE1_TFBS_cad
X	10147085	X_10147085_SNP [dm3] X_10253052_SNP [dm6]	G	A	2.347e^-5	0.734	INTRON Hk
3L	17363941	3L_17363941_SNP [dm3] 3L_17370841_SNP [dm6]	A	G	2.348e^-5	0.734	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA
3R	23961241	3R_23961241_DEL [dm3] 3R_28135519_DEL [dm6]	TT	T	2.400e^-5	0.738	INTERGENIC
2R	1003751	2R_1003751_DEL [dm3] 2R_5116246_DEL [dm6]	ATAA	A	2.463e^-5	0.745	DOWNSTREAM gus INTERGENIC	transposable element FlyBase
2L	18584998	2L_18584998_SNP [dm3] 2L_18584998_SNP [dm6]	A	G	2.529e^-5	0.753	INTRON Pde11
2L	12381171	2L_12381171_SNP [dm3] 2L_12381171_SNP [dm6]	G	A	2.612e^-5	0.754	INTRON bru-2
3L	17383827	3L_17383827_SNP [dm3] 3L_17390727_SNP [dm6]	T	C	2.615e^-5	0.754	INTERGENIC
3L	3222390	3L_3222390_SNP [dm3] 3L_3222390_SNP [dm6]	C	G	2.766e^-5	0.786	UTR_5_PRIME RpL28 UPSTREAM snoRNA:Or-CD12 & 5 others DOWNSTREAM snoRNA:Or-CD11a INTRON RpL28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15676140	2R_15676140_SNP [dm3] 2R_19788635_SNP [dm6]	T	C	2.881e^-5	0.798	EXON CR45231
3L	17360778	3L_17360778_SNP [dm3] 3L_17367678_SNP [dm6]	G	A	2.892e^-5	0.798	DOWNSTREAM Cad74A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12560687	3L_12560687_SNP [dm3] 3L_12567587_SNP [dm6]	A	T	2.967e^-5	0.806	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	936048	2R_936048_SNP [dm3] 2R_5048543_SNP [dm6]	C	A	3.088e^-5	0.827	INTERGENIC	transposable element FlyBase
3L	8407886	3L_8407886_SNP [dm3] 3L_8414786_SNP [dm6]	A	G	3.289e^-5	0.868	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13203404	2R_13203404_SNP [dm3] 2R_17315899_SNP [dm6]	C	T	3.359e^-5	0.875	INTRON mbl
X	5463564	X_5463564_SNP [dm3] X_5569531_SNP [dm6]	T	C	3.509e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	15474752	2L_15474752_SNP [dm3] 2L_15474752_SNP [dm6]	C	T	3.594e^-5	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12379829	2L_12379829_SNP [dm3] 2L_12379829_SNP [dm6]	A	C	3.676e^-5	0.889	INTRON bru-2
3L	17363881	3L_17363881_SNP [dm3] 3L_17370781_SNP [dm6]	A	T	3.703e^-5	0.889	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17363002	3L_17363002_SNP [dm3] 3L_17369902_SNP [dm6]	C	T	3.758e^-5	0.889	NON_SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_sens
2L	11241193	2L_11241193_SNP [dm3] 2L_11241193_SNP [dm6]	A	G	3.804e^-5	0.889	INTRON ab
3L	15288506	3L_15288506_SNP [dm3] 3L_15295406_SNP [dm6]	G	A	3.863e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8408000	3L_8408000_SNP [dm3] 3L_8414900_SNP [dm6]	G	C	3.990e^-5	0.889	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13253843	X_13253843_SNP [dm3] X_13359810_SNP [dm6]	C	T	4.062e^-5	0.889	INTRON Syt12
3R	10629380	3R_10629380_SNP [dm3] 3R_14803658_SNP [dm6]	T	C	4.106e^-5	0.889	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14888946	3L_14888946_SNP [dm3] 3L_14895846_SNP [dm6]	C	A	4.151e^-5	0.889	INTERGENIC
3R	13489071	3R_13489071_SNP [dm3] 3R_17663349_SNP [dm6]	T	C	4.163e^-5	0.889	SYNONYMOUS_CODING CG14322
X	19167665	X_19167665_SNP [dm3] X_19273632_SNP [dm6]	G	T	4.202e^-5	0.889	UTR_3_PRIME CG32537 DOWNSTREAM Vav	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17362442	3L_17362442_SNP [dm3] 3L_17369342_SNP [dm6]	A	C	4.281e^-5	0.889	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_sens
2R	12113709	2R_12113709_SNP [dm3] 2R_16226204_SNP [dm6]	T	A	4.298e^-5	0.889	START_GAINED CG15706 UTR_5_PRIME CG15706 UPSTREAM CG15706 & 1 other INTRON CG15706
2L	16379304	2L_16379304_SNP [dm3] 2L_16379304_SNP [dm6]	G	A	4.302e^-5	0.889	INTERGENIC
2L	5968269	2L_5968269_SNP [dm3] 2L_5968269_SNP [dm6]	C	T	4.506e^-5	0.889	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5968503	2L_5968503_SNP [dm3] 2L_5968503_SNP [dm6]	A	T	4.506e^-5	0.889	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1822209	2L_1822209_SNP [dm3] 2L_1822209_SNP [dm6]	C	T	4.560e^-5	0.889	SYNONYMOUS_CODING CG31933
3R	22705799	3R_22705799_SNP [dm3] 3R_26880077_SNP [dm6]	G	C	4.580e^-5	0.889	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	9224736	3R_9224736_SNP [dm3] 3R_13399014_SNP [dm6]	A	G	4.610e^-5	0.889	DOWNSTREAM CG14377 INTRON CG9796	TF binding site mE1_TFBS_cad
3L	12975803	3L_12975803_SNP [dm3] 3L_12982703_SNP [dm6]	G	C	4.622e^-5	0.889	INTERGENIC
3L	18386141	3L_18386141_SNP [dm3] 3L_18393041_SNP [dm6]	T	G	4.634e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22732730	3R_22732730_DEL [dm3] 3R_26907008_DEL [dm6]	GTACCGCG	G	4.641e^-5	0.889	INTRON T48	regulatory region REDfly_CRMs
3L	3221336	3L_3221336_DEL [dm3] 3L_3221336_DEL [dm6]	GCTTCAGC	G	4.676e^-5	0.889	DOWNSTREAM snoRNA:Or-CD12 & 4 others INTRON RpL28	TF binding site mE1_TFBS_HSA
3L	3221353	3L_3221353_SNP [dm3] 3L_3221353_SNP [dm6]	T	C	4.693e^-5	0.889	DOWNSTREAM snoRNA:Me28S-C3351 & 3 others INTRON RpL28 EXON snoRNA:Or-CD12	TF binding site mE1_TFBS_HSA
2R	7018321	2R_7018321_SNP [dm3] 2R_11130816_SNP [dm6]	C	A	4.875e^-5	0.889	INTERGENIC
3L	16432620	3L_16432620_SNP [dm3] 3L_16439520_SNP [dm6]	A	C	4.877e^-5	0.889	INTRON CG33158 & 1 other
3R	14327761	3R_14327761_SNP [dm3] 3R_18502039_SNP [dm6]	A	G	4.880e^-5	0.889	INTRON fru
3L	17414577	3L_17414577_SNP [dm3] 3L_17421477_SNP [dm6]	G	A	4.922e^-5	0.889	START_GAINED blot UTR_5_PRIME blot DOWNSTREAM Sec3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14888948	3L_14888948_SNP [dm3] 3L_14895848_SNP [dm6]	T	A	4.980e^-5	0.889	INTERGENIC
3R	22279228	3R_22279228_SNP [dm3] 3R_26453506_SNP [dm6]	A	T	5.031e^-5	0.889	INTRON CG5447
3L	1496033	3L_1496033_SNP [dm3] 3L_1496033_SNP [dm6]	G	C	5.050e^-5	0.889	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1919947	2L_1919947_SNP [dm3] 2L_1919947_SNP [dm6]	T	C	5.116e^-5	0.889	INTRON CG7337
2R	15417274	2R_15417274_INS [dm3] 2R_19529769_INS [dm6]	A	AA	5.160e^-5	0.889	UTR_3_PRIME sm DOWNSTREAM sm
2R	8533469	2R_8533469_SNP [dm3] 2R_12645964_SNP [dm6]	T	A	5.208e^-5	0.889	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	5.351e^-5	0.889	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	10629340	3R_10629340_SNP [dm3] 3R_14803618_SNP [dm6]	T	C	5.354e^-5	0.889	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18927852	3R_18927852_SNP [dm3] 3R_23102130_SNP [dm6]	T	C	5.425e^-5	0.889	INTRON CG13830
3R	25299426	3R_25299426_SNP [dm3] 3R_29473704_SNP [dm6]	T	A	5.425e^-5	0.889	INTRON Ptp99A
2L	12380809	2L_12380809_SNP [dm3] 2L_12380809_SNP [dm6]	T	A	5.445e^-5	0.889	INTRON bru-2
2L	6265530	2L_6265530_SNP [dm3] 2L_6265530_SNP [dm6]	G	A	5.502e^-5	0.889	INTRON Ddr
2L	8086305	2L_8086305_SNP [dm3] 2L_8086305_SNP [dm6]	G	C	5.554e^-5	0.889	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
3L	504701	3L_504701_SNP [dm3] 3L_504701_SNP [dm6]	T	C	5.723e^-5	0.889	INTRON klar
X	12608588	X_12608588_SNP [dm3] X_12714555_SNP [dm6]	G	A	5.771e^-5	0.889	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
X	15662400	X_15662400_SNP [dm3] X_15768367_SNP [dm6]	A	T	5.793e^-5	0.889	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7006897	2L_7006897_SNP [dm3] 2L_7006897_SNP [dm6]	C	T	5.799e^-5	0.889	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	5140541	3L_5140541_SNP [dm3] 3L_5147441_SNP [dm6]	A	T	5.826e^-5	0.889	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	10147020	X_10147020_SNP [dm3] X_10252987_SNP [dm6]	G	A	5.855e^-5	0.889	INTRON Hk
2L	1832534	2L_1832534_SNP [dm3] 2L_1832534_SNP [dm6]	T	G	5.869e^-5	0.889	UTR_5_PRIME c-cup UPSTREAM mir-2280
3L	3221301	3L_3221301_SNP [dm3] 3L_3221301_SNP [dm6]	A	G	5.878e^-5	0.889	DOWNSTREAM snoRNA:Or-CD12 & 4 others INTRON RpL28
X	20911231	X_20911231_SNP [dm3] X_21040204_SNP [dm6]	C	T	5.906e^-5	0.889	UTR_3_PRIME Ntf-2 DOWNSTREAM Ntf-2 INTRON CG15449
3R	18839044	3R_18839044_SNP [dm3] 3R_23013322_SNP [dm6]	A	T	5.924e^-5	0.889	UPSTREAM CR44225 INTRON CG6688	TF binding site mE1_TFBS_zfh1
2L	6265545	2L_6265545_SNP [dm3] 2L_6265545_SNP [dm6]	G	T	6.103e^-5	0.908	INTRON Ddr
X	20860295	X_20860295_DEL [dm3] X_20989268_DEL [dm6]	ACAAGCG	T	6.158e^-5	0.909	INTERGENIC
2R	4321876	2R_4321876_SNP [dm3] 2R_8434371_SNP [dm6]	G	A	6.273e^-5	0.919	NON_SYNONYMOUS_CODING Lcp2 UPSTREAM Lcp1Psi & 1 other
2L	6265532	2L_6265532_SNP [dm3] 2L_6265532_SNP [dm6]	A	G	6.394e^-5	0.924	INTRON Ddr
2L	12381412	2L_12381412_SNP [dm3] 2L_12381412_SNP [dm6]	A	C	6.550e^-5	0.924	INTRON bru-2
2L	1836124	2L_1836124_SNP [dm3] 2L_1836124_SNP [dm6]	C	T	6.688e^-5	0.924	UPSTREAM wry INTERGENIC
2L	1836281	2L_1836281_SNP [dm3] 2L_1836281_SNP [dm6]	C	A	6.688e^-5	0.924	UPSTREAM wry INTERGENIC
2R	10379775	2R_10379775_SNP [dm3] 2R_14492270_SNP [dm6]	T	A	6.701e^-5	0.924	INTRON L	TF binding site mE1_TFBS_cad
3L	13225082	3L_13225082_SNP [dm3] 3L_13231982_SNP [dm6]	C	A	6.758e^-5	0.924	INTRON caps
3R	9055811	3R_9055811_SNP [dm3] 3R_13230089_SNP [dm6]	C	T	6.764e^-5	0.924	INTRON Ace
3R	16057893	3R_16057893_SNP [dm3] 3R_20232171_SNP [dm6]	G	T	6.798e^-5	0.924	INTRON Nlg4
3R	6458797	3R_6458797_SNP [dm3] 3R_10633075_SNP [dm6]	A	G	6.817e^-5	0.924	INTRON hth	TF binding site mE1_TFBS_cad
2L	8086173	2L_8086173_SNP [dm3] 2L_8086173_SNP [dm6]	T	C	6.939e^-5	0.924	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8086098	2L_8086098_SNP [dm3] 2L_8086098_SNP [dm6]	C	T	6.947e^-5	0.924	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13943692	3R_13943692_SNP [dm3] 3R_18117970_SNP [dm6]	C	T	7.028e^-5	0.924	INTRON sr	TF binding site BDTNP1_TFBS_twi
2L	10352617	2L_10352617_SNP [dm3] 2L_10352617_SNP [dm6]	A	G	7.045e^-5	0.924	UPSTREAM CG34367 INTRON CG34367
2L	12380963	2L_12380963_SNP [dm3] 2L_12380963_SNP [dm6]	G	C	7.070e^-5	0.924	INTRON bru-2
X	16116633	X_16116633_SNP [dm3] X_16222600_SNP [dm6]	A	G	7.120e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	3023507	2R_3023507_SNP [dm3] 2R_7136002_SNP [dm6]	T	C	7.190e^-5	0.924	DOWNSTREAM CR44443 INTERGENIC
2L	1826591	2L_1826591_SNP [dm3] 2L_1826591_SNP [dm6]	T	G	7.215e^-5	0.924	UPSTREAM CG31664 INTERGENIC
X	12678635	X_12678635_SNP [dm3] X_12784602_SNP [dm6]	A	T	7.272e^-5	0.924	DOWNSTREAM Pde9 INTRON CG32647
2R	1006768	2R_1006768_SNP [dm3] 2R_5119263_SNP [dm6]	G	C	7.331e^-5	0.924	INTRON gus
2L	10352608	2L_10352608_SNP [dm3] 2L_10352608_SNP [dm6]	A	T	7.336e^-5	0.924	UPSTREAM CG34367 INTRON CG34367
3L	504545	3L_504545_SNP [dm3] 3L_504545_SNP [dm6]	A	G	7.377e^-5	0.924	INTRON klar
3L	3639513	3L_3639513_SNP [dm3] 3L_3639513_SNP [dm6]	T	G	7.394e^-5	0.924	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4405941	3L_4405941_SNP [dm3] 3L_4405941_SNP [dm6]	A	G	7.548e^-5	0.928	SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	10939610	3R_10939610_SNP [dm3] 3R_15113888_SNP [dm6]	T	C	7.708e^-5	0.928	INTRON CG42788
X	16116632	X_16116632_SNP [dm3] X_16222599_SNP [dm6]	A	T	7.810e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	8651355	2R_8651355_SNP [dm3] 2R_12763850_SNP [dm6]	T	G	7.860e^-5	0.928	DOWNSTREAM CG12374 INTERGENIC
2R	11737156	2R_11737156_SNP [dm3] 2R_15849651_SNP [dm6]	T	G	7.883e^-5	0.928	NON_SYNONYMOUS_CODING tun
3R	22705800	3R_22705800_SNP [dm3] 3R_26880078_SNP [dm6]	T	C	7.919e^-5	0.928	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	15981768	3R_15981768_DEL [dm3] 3R_20156046_DEL [dm6]	TT	T	8.017e^-5	0.928	INTERGENIC
X	20369867	X_20369867_SNP [dm3] X_20498840_SNP [dm6]	G	A	8.050e^-5	0.928	INTRON RhoGAP19D
X	20012659	X_20012659_SNP [dm3] X_20118626_SNP [dm6]	G	A	8.056e^-5	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4405944	3L_4405944_SNP [dm3] 3L_4405944_SNP [dm6]	C	T	8.124e^-5	0.928	SYNONYMOUS_CODING CG15019 UPSTREAM DOR DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	15697400	3L_15697400_SNP [dm3] 3L_15704300_SNP [dm6]	A	T	8.217e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15697401	3L_15697401_DEL [dm3] 3L_15704301_DEL [dm6]	AA	A	8.217e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16056257	3R_16056257_SNP [dm3] 3R_20230535_SNP [dm6]	A	C	8.243e^-5	0.928	INTRON Nlg4
2L	1827214	2L_1827214_SNP [dm3] 2L_1827214_SNP [dm6]	C	G	8.247e^-5	0.928	UPSTREAM CG31664 INTERGENIC
2L	10352609	2L_10352609_SNP [dm3] 2L_10352609_SNP [dm6]	A	T	8.300e^-5	0.928	UPSTREAM CG34367 INTRON CG34367
X	9076789	X_9076789_SNP [dm3] X_9182756_SNP [dm6]	A	T	8.432e^-5	0.928	UTR_3_PRIME mei-P26
3L	14888997	3L_14888997_SNP [dm3] 3L_14895897_SNP [dm6]	C	T	8.437e^-5	0.928	INTERGENIC
3R	23139946	3R_23139946_SNP [dm3] 3R_27314224_SNP [dm6]	G	A	8.507e^-5	0.928	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16257732	3L_16257732_SNP [dm3] 3L_16264632_SNP [dm6]	A	T	8.557e^-5	0.928	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10378888	2R_10378888_SNP [dm3] 2R_14491383_SNP [dm6]	C	T	8.567e^-5	0.928	INTRON L
3L	15697086	3L_15697086_SNP [dm3] 3L_15703986_SNP [dm6]	T	C	8.597e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	10352707	2L_10352707_SNP [dm3] 2L_10352707_SNP [dm6]	C	A	8.605e^-5	0.928	UPSTREAM CG34367 INTRON CG34367
3R	18263424	3R_18263424_SNP [dm3] 3R_22437702_SNP [dm6]	A	G	8.606e^-5	0.928	INTERGENIC
3R	19786194	3R_19786194_SNP [dm3] 3R_23960472_SNP [dm6]	C	T	8.647e^-5	0.928	DOWNSTREAM AP-1sigma INTRON AP-1sigma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12380642	2L_12380642_SNP [dm3] 2L_12380642_SNP [dm6]	G	A	8.663e^-5	0.928	INTRON bru-2
X	9978080	X_9978080_SNP [dm3] X_10084047_SNP [dm6]	G	A	8.712e^-5	0.928	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1008638	X_1008638_SNP [dm3] X_1114605_SNP [dm6]	G	A	8.862e^-5	0.938	INTRON CG3655
3R	14038960	3R_14038960_SNP [dm3] 3R_18213238_SNP [dm6]	T	C	8.942e^-5	0.938	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9380915	2R_9380915_SNP [dm3] 2R_13493410_SNP [dm6]	T	C	8.999e^-5	0.938	INTRON bbc
3R	16056001	3R_16056001_SNP [dm3] 3R_20230279_SNP [dm6]	A	G	9.024e^-5	0.938	INTRON Nlg4
3L	15597732	3L_15597732_SNP [dm3] 3L_15604632_SNP [dm6]	A	C	9.069e^-5	0.938	INTRON RhoGAP71E
2R	7369068	2R_7369068_SNP [dm3] 2R_11481563_SNP [dm6]	A	G	9.109e^-5	0.938	INTRON inv
2L	1826383	2L_1826383_SNP [dm3] 2L_1826383_SNP [dm6]	T	C	9.330e^-5	0.956	UTR_5_PRIME CG31664
3L	4405959	3L_4405959_SNP [dm3] 3L_4405959_SNP [dm6]	G	A	9.478e^-5	0.966	SYNONYMOUS_CODING CG15019 UPSTREAM DOR DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	13311867	3L_13311867_SNP [dm3] 3L_13318767_SNP [dm6]	C	T	9.648e^-5	0.97	INTERGENIC
3R	15973836	3R_15973836_SNP [dm3] 3R_20148114_SNP [dm6]	G	T	9.687e^-5	0.97	INTERGENIC
3L	3201692	3L_3201692_SNP [dm3] 3L_3201692_SNP [dm6]	C	G	9.705e^-5	0.97	SYNONYMOUS_CODING gry DOWNSTREAM CG32271
2L	10352711	2L_10352711_SNP [dm3] 2L_10352711_SNP [dm6]	G	C	9.765e^-5	0.97	UPSTREAM CG34367 INTRON CG34367
2R	18453313	2R_18453313_SNP [dm3] 2R_22565808_SNP [dm6]	T	C	9.822e^-5	0.97	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad
3L	17361240	3L_17361240_SNP [dm3] 3L_17368140_SNP [dm6]	C	T	9.830e^-5	0.97	UTR_3_PRIME Cad74A DOWNSTREAM CR45688
3L	16210722	3L_16210722_SNP [dm3] 3L_16217622_SNP [dm6]	A	G	1.001e^-4	0.982	UPSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4839164	2L_4839164_DEL [dm3] 2L_4839164_DEL [dm6]	CC	C	1.012e^-4	0.984	UTR_5_PRIME CG12194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_zfh1
3L	14888959	3L_14888959_SNP [dm3] 3L_14895859_SNP [dm6]	C	T	1.015e^-4	0.984	INTERGENIC
3L	10972283	3L_10972283_SNP [dm3] 3L_10979183_SNP [dm6]	A	T	1.018e^-4	0.984	UPSTREAM CR45745 INTERGENIC
2L	7327700	2L_7327700_DEL [dm3] 2L_7327700_DEL [dm6]	CGAT	C	1.035e^-4	0.985	INTERGENIC
3L	17364732	3L_17364732_SNP [dm3] 3L_17371632_SNP [dm6]	T	G	1.036e^-4	0.985	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17360380	3L_17360380_SNP [dm3] 3L_17367280_SNP [dm6]	A	C	1.039e^-4	0.985	DOWNSTREAM Cad74A EXON CR45688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14924267	2L_14924267_SNP [dm3] 2L_14924267_SNP [dm6]	C	G	1.040e^-4	0.985	UPSTREAM CG3491 INTRON CG42313
3L	7416302	3L_7416302_SNP [dm3] 3L_7423202_SNP [dm6]	A	G	1.049e^-4	0.986	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6503173	2R_6503173_DEL [dm3] 2R_10615668_DEL [dm6]	CGAAC	C	1.053e^-4	0.986	UTR_3_PRIME psq
3R	23959840	3R_23959840_SNP [dm3] 3R_28134118_SNP [dm6]	A	C	1.059e^-4	0.986	INTERGENIC
2R	14779641	2R_14779641_SNP [dm3] 2R_18892136_SNP [dm6]	A	T	1.064e^-4	0.986	INTRON sano
2R	15470548	2R_15470548_SNP [dm3] 2R_19583043_SNP [dm6]	T	G	1.071e^-4	0.986	INTRON sm
3L	504700	3L_504700_SNP [dm3] 3L_504700_SNP [dm6]	A	G	1.077e^-4	0.986	INTRON klar
2R	19548119	2R_19548119_SNP [dm3] 2R_23660596_SNP [dm6]	T	G	1.090e^-4	0.986	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	17884110	2L_17884110_SNP [dm3] 2L_17884110_SNP [dm6]	G	A	1.096e^-4	0.986	INTERGENIC
2R	18943284	2R_18943284_SNP [dm3] 2R_23055761_SNP [dm6]	G	A	1.101e^-4	0.986	INTRON CG44252
3R	21798152	3R_21798152_SNP [dm3] 3R_25972430_SNP [dm6]	G	A	1.104e^-4	0.986	INTRON CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17538168	X_17538168_SNP [dm3] X_17644135_SNP [dm6]	C	T	1.105e^-4	0.986	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2L	14252838	2L_14252838_SNP [dm3] 2L_14252838_SNP [dm6]	A	G	1.110e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	14779639	2R_14779639_SNP [dm3] 2R_18892134_SNP [dm6]	A	T	1.124e^-4	0.986	INTRON sano
2R	10380536	2R_10380536_SNP [dm3] 2R_14493031_SNP [dm6]	T	C	1.128e^-4	0.986	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5550088	2L_5550088_SNP [dm3] 2L_5550088_SNP [dm6]	G	A	1.129e^-4	0.986	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4915619	3R_4915619_SNP [dm3] 3R_9089897_SNP [dm6]	C	G	1.132e^-4	0.986	INTRON pum
3R	16056201	3R_16056201_SNP [dm3] 3R_20230479_SNP [dm6]	A	G	1.135e^-4	0.986	INTRON Nlg4
3L	15862572	3L_15862572_SNP [dm3] 3L_15869472_SNP [dm6]	C	A	1.138e^-4	0.986	INTRON pHCl
2L	3551721	2L_3551721_SNP [dm3] 2L_3551721_SNP [dm6]	A	T	1.144e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	1.149e^-4	0.986	INTRON Con
3R	9067053	3R_9067053_SNP [dm3] 3R_13241331_SNP [dm6]	A	T	1.155e^-4	0.986	INTRON Ace
3R	23961224	3R_23961224_SNP [dm3] 3R_28135502_SNP [dm6]	C	T	1.158e^-4	0.986	INTERGENIC
3R	22732744	3R_22732744_SNP [dm3] 3R_26907022_SNP [dm6]	A	C	1.162e^-4	0.986	INTRON T48	regulatory region REDfly_CRMs
3L	9320543	3L_9320543_SNP [dm3] 3L_9327443_SNP [dm6]	T	C	1.179e^-4	0.994	INTERGENIC
3L	17362587	3L_17362587_SNP [dm3] 3L_17369487_SNP [dm6]	A	G	1.190e^-4	0.994	NON_SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8086559	2L_8086559_SNP [dm3] 2L_8086559_SNP [dm6]	T	A	1.192e^-4	0.994	INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	18617943	2L_18617943_SNP [dm3] 2L_18617943_SNP [dm6]	A	T	1.193e^-4	0.994	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6587057	2L_6587057_INS [dm3] 2L_6587057_INS [dm6]	T	TCTCGT	1.203e^-4	0.998	UTR_5_PRIME CG11319
2L	12372930	2L_12372930_DEL [dm3] 2L_12372930_DEL [dm6]	TT	G	1.216e^-4	0.999	INTRON bru-2
2L	12372983	2L_12372983_SNP [dm3] 2L_12372983_SNP [dm6]	G	A	1.216e^-4	0.999	INTRON bru-2
2R	17867520	2R_17867520_SNP [dm3] 2R_21980015_SNP [dm6]	A	T	1.237e^-4	0.999	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
X	8716476	X_8716476_SNP [dm3] X_8822443_SNP [dm6]	A	C	1.239e^-4	0.999	INTERGENIC
2R	15470569	2R_15470569_SNP [dm3] 2R_19583064_SNP [dm6]	T	A	1.255e^-4	0.999	INTRON sm
3R	6454638	3R_6454638_SNP [dm3] 3R_10628916_SNP [dm6]	C	G	1.257e^-4	0.999	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
3L	8563155	3L_8563155_INS [dm3] 3L_8570055_INS [dm6]	T	TT	1.257e^-4	0.999	DOWNSTREAM CR43910 INTRON rhea
2L	10352632	2L_10352632_SNP [dm3] 2L_10352632_SNP [dm6]	A	T	1.260e^-4	0.999	UPSTREAM CG34367 INTRON CG34367
X	11824105	X_11824105_SNP [dm3] X_11930072_SNP [dm6]	C	T	1.269e^-4	0.999	SYNONYMOUS_CODING CG10362
2L	13734357	2L_13734357_SNP [dm3] 2L_13734357_SNP [dm6]	G	C	1.274e^-4	0.999	INTERGENIC
2L	1795545	2L_1795545_SNP [dm3] 2L_1795545_SNP [dm6]	G	A	1.277e^-4	0.999	UPSTREAM Gr22a INTERGENIC
3R	23332693	3R_23332693_SNP [dm3] 3R_27506971_SNP [dm6]	A	G	1.278e^-4	0.999	INTERGENIC
X	5600754	X_5600754_DEL [dm3] X_5706721_DEL [dm6]	AACTTGAAAACCTA...	A	1.279e^-4	0.999	INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	11484014	3R_11484014_SNP [dm3] 3R_15658292_SNP [dm6]	C	T	1.279e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23338836	3R_23338836_SNP [dm3] 3R_27513114_SNP [dm6]	A	G	1.302e^-4	1	INTERGENIC
3L	17361239	3L_17361239_SNP [dm3] 3L_17368139_SNP [dm6]	T	A	1.306e^-4	1	UTR_3_PRIME Cad74A DOWNSTREAM CR45688
3L	3639464	3L_3639464_SNP [dm3] 3L_3639464_SNP [dm6]	G	A	1.312e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17381494	3L_17381494_SNP [dm3] 3L_17388394_SNP [dm6]	T	C	1.313e^-4	1	INTRON CG13731
2R	524905	2R_524905_SNP [dm3] 2R_4637400_SNP [dm6]	A	G	1.324e^-4	1	INTERGENIC	transposable element FlyBase
3L	13345434	3L_13345434_SNP [dm3] 3L_13352334_SNP [dm6]	A	T	1.328e^-4	1	SYNONYMOUS_CODING CG17687
3L	5140462	3L_5140462_SNP [dm3] 3L_5147362_SNP [dm6]	C	T	1.338e^-4	1	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4630852	3L_4630852_SNP [dm3] 3L_4630852_SNP [dm6]	C	T	1.353e^-4	1	INTRON axo
3R	18839040	3R_18839040_SNP [dm3] 3R_23013318_SNP [dm6]	C	T	1.357e^-4	1	UPSTREAM CR44225 INTRON CG6688	TF binding site mE1_TFBS_zfh1
3L	17364972	3L_17364972_SNP [dm3] 3L_17371872_SNP [dm6]	T	A	1.359e^-4	1	INTRON Cad74A
3R	22705785	3R_22705785_SNP [dm3] 3R_26880063_SNP [dm6]	C	G	1.363e^-4	1	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3L	10199152	3L_10199152_SNP [dm3] 3L_10206052_SNP [dm6]	G	A	1.371e^-4	1	EXON CR44538
2L	2923726	2L_2923726_DEL [dm3] 2L_2923726_DEL [dm6]	CC	T	1.382e^-4	1	INTRON lilli
2R	8133291	2R_8133291_SNP [dm3] 2R_12245786_SNP [dm6]	A	T	1.384e^-4	1	DOWNSTREAM CR44315 INTERGENIC
2R	8651352	2R_8651352_SNP [dm3] 2R_12763847_SNP [dm6]	A	T	1.398e^-4	1	DOWNSTREAM CG12374 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8046241	2L_8046241_SNP [dm3] 2L_8046241_SNP [dm6]	A	T	1.398e^-4	1	SYNONYMOUS_CODING CG7466
2L	914796	2L_914796_SNP [dm3] 2L_914796_SNP [dm6]	G	A	1.398e^-4	1	SPLICE_SITE_REGION GluRIIC INTRON GluRIIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13512029	2R_13512029_SNP [dm3] 2R_17624524_SNP [dm6]	G	T	1.402e^-4	1	INTRON CG10936
3L	16264898	3L_16264898_SNP [dm3] 3L_16271798_SNP [dm6]	A	G	1.402e^-4	1	UTR_3_PRIME CG13067 UPSTREAM CG34248	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12378942	2L_12378942_SNP [dm3] 2L_12378942_SNP [dm6]	A	T	1.406e^-4	1	INTRON bru-2
2L	12380990	2L_12380990_SNP [dm3] 2L_12380990_SNP [dm6]	C	T	1.406e^-4	1	INTRON bru-2
2L	13233770	2L_13233770_SNP [dm3] 2L_13233770_SNP [dm6]	A	T	1.408e^-4	1	DOWNSTREAM CG15479 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	975099	2R_975099_SNP [dm3] 2R_5087594_SNP [dm6]	G	A	1.413e^-4	1	INTERGENIC	transposable element FlyBase
2R	8651342	2R_8651342_SNP [dm3] 2R_12763837_SNP [dm6]	G	A	1.426e^-4	1	DOWNSTREAM CG12374 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13745061	2L_13745061_SNP [dm3] 2L_13745061_SNP [dm6]	G	A	1.430e^-4	1	INTERGENIC
2L	15241545	2L_15241545_SNP [dm3] 2L_15241545_SNP [dm6]	G	T	1.435e^-4	1	INTRON ZnT35C
2R	11666186	2R_11666186_SNP [dm3] 2R_15778681_SNP [dm6]	C	T	1.450e^-4	1	INTRON Zasp52
2L	520949	2L_520949_SNP [dm3] 2L_520949_SNP [dm6]	G	T	1.451e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6766116	2L_6766116_SNP [dm3] 2L_6766116_SNP [dm6]	G	C	1.454e^-4	1	SYNONYMOUS_CODING CG11321 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4406019	3L_4406019_SNP [dm3] 3L_4406019_SNP [dm6]	G	A	1.456e^-4	1	UTR_5_PRIME CG15019 UPSTREAM DOR DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	18876901	2L_18876901_DEL [dm3] 2L_18876901_DEL [dm6]	ATTGCCATTC	A	1.461e^-4	1	INTRON tup	TF binding site BDTNP1_TFBS_da
X	2042783	X_2042783_INS [dm3] X_2148750_INS [dm6]	T	TT	1.463e^-4	1	UTR_3_PRIME bcn92 DOWNSTREAM Pgd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1374313	3L_1374313_INS [dm3] 3L_1374313_INS [dm6]	T	TT	1.466e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
2R	995724	2R_995724_SNP [dm3] 2R_5108219_SNP [dm6]	C	T	1.472e^-4	1	INTERGENIC
2L	5550142	2L_5550142_SNP [dm3] 2L_5550142_SNP [dm6]	T	A	1.475e^-4	1	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15668943	2R_15668943_SNP [dm3] 2R_19781438_SNP [dm6]	C	T	1.484e^-4	1	INTERGENIC
3R	13110440	3R_13110440_SNP [dm3] 3R_17284718_SNP [dm6]	T	G	1.507e^-4	1	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418
3L	504554	3L_504554_SNP [dm3] 3L_504554_SNP [dm6]	C	T	1.509e^-4	1	INTRON klar
3R	23961223	3R_23961223_SNP [dm3] 3R_28135501_SNP [dm6]	G	A	1.511e^-4	1	INTERGENIC
2R	15396169	2R_15396169_SNP [dm3] 2R_19508664_SNP [dm6]	G	A	1.534e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1007617	2R_1007617_SNP [dm3] 2R_5120112_SNP [dm6]	A	C	1.540e^-4	1	INTRON gus	transposable element FlyBase
3R	9055844	3R_9055844_SNP [dm3] 3R_13230122_SNP [dm6]	A	T	1.549e^-4	1	INTRON Ace
3R	16057930	3R_16057930_SNP [dm3] 3R_20232208_SNP [dm6]	G	T	1.563e^-4	1	INTRON Nlg4
3L	745056	3L_745056_SNP [dm3] 3L_745056_SNP [dm6]	A	G	1.563e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13488585	3R_13488585_SNP [dm3] 3R_17662863_SNP [dm6]	T	C	1.576e^-4	1	SYNONYMOUS_CODING CG14322
2L	7354480	2L_7354480_SNP [dm3] 2L_7354480_SNP [dm6]	G	C	1.577e^-4	1	INTERGENIC
3L	11672225	3L_11672225_SNP [dm3] 3L_11679125_SNP [dm6]	A	G	1.579e^-4	1	INTRON CG32085
2L	10082722	2L_10082722_SNP [dm3] 2L_10082722_SNP [dm6]	T	C	1.589e^-4	1	INTRON CG44153
2R	4492048	2R_4492048_DEL [dm3] 2R_8604543_DEL [dm6]	TGAT	T	1.589e^-4	1	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17867364	2R_17867364_SNP [dm3] 2R_21979859_SNP [dm6]	A	T	1.593e^-4	1	UPSTREAM Gr58a & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15698518	3L_15698518_SNP [dm3] 3L_15705418_SNP [dm6]	C	A	1.600e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8852426	3R_8852426_SNP [dm3] 3R_13026704_SNP [dm6]	T	A	1.608e^-4	1	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
2R	2040187	2R_2040187_SNP [dm3] 2R_6152682_SNP [dm6]	C	G	1.615e^-4	1	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	958255	2L_958255_SNP [dm3] 2L_958255_SNP [dm6]	C	A	1.622e^-4	1	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12445980	2R_12445980_SNP [dm3] 2R_16558475_SNP [dm6]	A	G	1.642e^-4	1	UTR_3_PRIME Syn2 DOWNSTREAM DAT
3R	15973874	3R_15973874_DEL [dm3] 3R_20148152_DEL [dm6]	TA	T	1.643e^-4	1	INTERGENIC
3R	25619905	3R_25619905_SNP [dm3] 3R_29794183_SNP [dm6]	C	T	1.643e^-4	1	UPSTREAM sro DOWNSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	15572931	X_15572931_SNP [dm3] X_15678898_SNP [dm6]	C	T	1.645e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5217929	2L_5217929_SNP [dm3] 2L_5217929_SNP [dm6]	C	T	1.647e^-4	1	UTR_5_PRIME TpnC25D UPSTREAM TpnC25D INTRON TpnC25D
3L	16257733	3L_16257733_SNP [dm3] 3L_16264633_SNP [dm6]	A	G	1.653e^-4	1	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24671973	3R_24671973_SNP [dm3] 3R_28846251_SNP [dm6]	C	A	1.669e^-4	1	INTRON spg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5306552	2R_5306552_SNP [dm3] 2R_9419047_SNP [dm6]	G	T	1.672e^-4	1	INTERGENIC
X	1010357	X_1010357_SNP [dm3] X_1116324_SNP [dm6]	A	T	1.679e^-4	1	INTRON CG3655
X	4797297	X_4797297_SNP [dm3] X_4903264_SNP [dm6]	C	T	1.687e^-4	1	INTRON CG42594
3L	15256420	3L_15256420_SNP [dm3] 3L_15263320_SNP [dm6]	C	T	1.691e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	15698458	3L_15698458_SNP [dm3] 3L_15705358_SNP [dm6]	C	A	1.693e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	1000572	X_1000572_SNP [dm3] X_1106539_SNP [dm6]	C	T	1.696e^-4	1	INTRON CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	5659968	3R_5659968_SNP [dm3] 3R_9834246_SNP [dm6]	C	G	1.697e^-4	1	INTRON Teh1
3L	2220035	3L_2220035_SNP [dm3] 3L_2220035_SNP [dm6]	C	T	1.700e^-4	1	INTERGENIC
3L	429304	3L_429304_SNP [dm3] 3L_429304_SNP [dm6]	G	A	1.729e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17538386	X_17538386_SNP [dm3] X_17644353_SNP [dm6]	A	T	1.733e^-4	1	INTRON RhoGAPp190
3R	7340732	3R_7340732_SNP [dm3] 3R_11515010_SNP [dm6]	C	T	1.745e^-4	1	INTERGENIC
3R	24112942	3R_24112942_SNP [dm3] 3R_28287220_SNP [dm6]	T	C	1.746e^-4	1	INTERGENIC
2R	12552105	2R_12552105_SNP [dm3] 2R_16664600_SNP [dm6]	A	C	1.747e^-4	1	UPSTREAM Picot INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9185945	2R_9185945_SNP [dm3] 2R_13298440_SNP [dm6]	G	A	1.755e^-4	1	NON_SYNONYMOUS_CODING CG4734 UPSTREAM CG17047	TF binding site mE1_TFBS_cad
3L	4630008	3L_4630008_SNP [dm3] 3L_4630008_SNP [dm6]	T	A	1.764e^-4	1	SYNONYMOUS_CODING axo UTR_3_PRIME axo DOWNSTREAM Rpd3
3R	22705711	3R_22705711_INS [dm3] 3R_26879989_INS [dm6]	T	TGAGCAGTAGT...	1.765e^-4	1	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
X	16116635	X_16116635_DEL [dm3] X_16222602_DEL [dm6]	TA	T	1.765e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	13734359	2L_13734359_DEL [dm3] 2L_13734359_DEL [dm6]	GA	G	1.776e^-4	1	INTERGENIC
2R	17854719	2R_17854719_SNP [dm3] 2R_21967214_SNP [dm6]	G	A	1.787e^-4	1	INTRON ppk9
X	5385561	X_5385561_SNP [dm3] X_5491528_SNP [dm6]	A	G	1.796e^-4	1	INTRON SPR	TF binding site mE1_TFBS_chinmo
3R	15210265	3R_15210265_SNP [dm3] 3R_19384543_SNP [dm6]	G	A	1.796e^-4	1	INTRON Ino80
3R	25215448	3R_25215448_SNP [dm3] 3R_29389726_SNP [dm6]	G	C	1.797e^-4	1	INTRON Ptp99A
3L	11664438	3L_11664438_SNP [dm3] 3L_11671338_SNP [dm6]	A	C	1.801e^-4	1	INTRON CG32085
3L	3982740	3L_3982740_SNP [dm3] 3L_3982740_SNP [dm6]	A	G	1.814e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7956030	3L_7956030_SNP [dm3] 3L_7962930_SNP [dm6]	A	G	1.817e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11628137	2R_11628137_SNP [dm3] 2R_15740632_SNP [dm6]	T	G	1.827e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	1.835e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18269881	3L_18269881_SNP [dm3] 3L_18276781_SNP [dm6]	T	C	1.837e^-4	1	INTERGENIC
3R	18929157	3R_18929157_SNP [dm3] 3R_23103435_SNP [dm6]	C	T	1.850e^-4	1	INTRON CG13830
2R	9381136	2R_9381136_SNP [dm3] 2R_13493631_SNP [dm6]	A	G	1.851e^-4	1	INTRON bbc
X	5086569	X_5086569_SNP [dm3] X_5192536_SNP [dm6]	G	A	1.855e^-4	1	INTRON rg & 1 other	TF binding site mE1_TFBS_Trl
3R	8852473	3R_8852473_SNP [dm3] 3R_13026751_SNP [dm6]	C	T	1.858e^-4	1	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
3L	4695085	3L_4695085_SNP [dm3] 3L_4695085_SNP [dm6]	A	T	1.874e^-4	1	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4846177	2L_4846177_SNP [dm3] 2L_4846177_SNP [dm6]	G	T	1.876e^-4	1	UTR_5_PRIME mxt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10667238	2R_10667238_SNP [dm3] 2R_14779733_SNP [dm6]	G	A	1.880e^-4	1	INTRON kn	TF binding site BDTNP1_TFBS_z
2L	1830358	2L_1830358_SNP [dm3] 2L_1830358_SNP [dm6]	C	T	1.882e^-4	1	INTERGENIC
X	16083415	X_16083415_SNP [dm3] X_16189382_SNP [dm6]	T	A	1.889e^-4	1	INTERGENIC
3L	2222968	3L_2222968_SNP [dm3] 3L_2222968_SNP [dm6]	G	A	1.892e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2919602	2L_2919602_DEL [dm3] 2L_2919602_DEL [dm6]	ATA	A	1.901e^-4	1	INTRON lilli
2R	3028996	2R_3028996_SNP [dm3] 2R_7141491_SNP [dm6]	T	A	1.905e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1009090	X_1009090_SNP [dm3] X_1115057_SNP [dm6]	G	T	1.908e^-4	1	INTRON CG3655
2L	4309067	2L_4309067_SNP [dm3] 2L_4309067_SNP [dm6]	A	C	1.908e^-4	1	INTRON tutl
X	14611962	X_14611962_SNP [dm3] X_14717929_SNP [dm6]	G	C	1.909e^-4	1	DOWNSTREAM hog INTRON NetB
2R	10378918	2R_10378918_SNP [dm3] 2R_14491413_SNP [dm6]	G	T	1.928e^-4	1	INTRON L
2L	1822434	2L_1822434_SNP [dm3] 2L_1822434_SNP [dm6]	C	A	1.934e^-4	1	NON_SYNONYMOUS_CODING CG31933
2R	7018326	2R_7018326_SNP [dm3] 2R_11130821_SNP [dm6]	G	T	1.945e^-4	1	INTERGENIC
2L	13734376	2L_13734376_SNP [dm3] 2L_13734376_SNP [dm6]	C	A	1.947e^-4	1	INTERGENIC
X	8384946	X_8384946_SNP [dm3] X_8490913_SNP [dm6]	C	G	1.950e^-4	1	UPSTREAM CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4394955	2R_4394955_SNP [dm3] 2R_8507450_SNP [dm6]	T	A	1.953e^-4	1	INTRON mtt
2R	3485516	2R_3485516_SNP [dm3] 2R_7598011_SNP [dm6]	G	T	1.981e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	8158039	2R_8158039_SNP [dm3] 2R_12270534_SNP [dm6]	T	G	1.981e^-4	1	INTRON Cam	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7387842	2R_7387842_SNP [dm3] 2R_11500337_SNP [dm6]	C	T	1.983e^-4	1	INTRON inv	TF binding site mE1_TFBS_cad
3L	17366369	3L_17366369_SNP [dm3] 3L_17373269_SNP [dm6]	G	A	1.983e^-4	1	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22758009	3R_22758009_SNP [dm3] 3R_26932287_SNP [dm6]	C	T	2.008e^-4	1	INTRON sda
3L	22895364	3L_22895364_SNP [dm3] 3L_22902264_SNP [dm6]	C	T	2.008e^-4	1	SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21787285	3R_21787285_SNP [dm3] 3R_25961563_SNP [dm6]	G	A	2.018e^-4	1	UTR_3_PRIME CG14540 UPSTREAM boss
2L	15516743	2L_15516743_SNP [dm3] 2L_15516743_SNP [dm6]	C	T	2.021e^-4	1	UPSTREAM CR44864 INTERGENIC
2R	3027302	2R_3027302_SNP [dm3] 2R_7139797_SNP [dm6]	T	G	2.025e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1832982	2L_1832982_SNP [dm3] 2L_1832982_SNP [dm6]	A	G	2.027e^-4	1	UPSTREAM c-cup INTERGENIC
2L	18254222	2L_18254222_SNP [dm3] 2L_18254222_SNP [dm6]	A	C	2.029e^-4	1	INTRON CG42750
X	4797274	X_4797274_SNP [dm3] X_4903241_SNP [dm6]	G	A	2.032e^-4	1	INTRON CG42594
3L	10642934	3L_10642934_SNP [dm3] 3L_10649834_SNP [dm6]	A	G	2.032e^-4	1	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10642981	3L_10642981_SNP [dm3] 3L_10649881_SNP [dm6]	A	G	2.032e^-4	1	INTRON CG32066
3R	22732726	3R_22732726_SNP [dm3] 3R_26907004_SNP [dm6]	T	C	2.037e^-4	1	INTRON T48	regulatory region REDfly_CRMs
X	5479547	X_5479547_SNP [dm3] X_5585514_SNP [dm6]	G	A	2.041e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15157255	3L_15157255_SNP [dm3] 3L_15164155_SNP [dm6]	C	T	2.043e^-4	1	UPSTREAM CG7011 INTERGENIC
2L	11138704	2L_11138704_SNP [dm3] 2L_11138704_SNP [dm6]	T	A	2.053e^-4	1	DOWNSTREAM Gyc32E & 1 other INTERGENIC
3R	23247397	3R_23247397_SNP [dm3] 3R_27421675_SNP [dm6]	A	G	2.058e^-4	1	INTRON side
3L	18897443	3L_18897443_SNP [dm3] 3L_18904343_SNP [dm6]	A	T	2.066e^-4	1	NON_SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17358779	3L_17358779_SNP [dm3] 3L_17365679_SNP [dm6]	G	A	2.070e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5969703	2L_5969703_SNP [dm3] 2L_5969703_SNP [dm6]	A	C	2.073e^-4	1	UTR_3_PRIME Ucp4C UPSTREAM Ucp4B DOWNSTREAM CR43465	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19470604	2R_19470604_SNP [dm3] 2R_23583081_SNP [dm6]	C	G	2.075e^-4	1	INTRON apt	TF binding site mE1_TFBS_HSA
3L	14553175	3L_14553175_SNP [dm3] 3L_14560075_SNP [dm6]	A	G	2.078e^-4	1	UTR_5_PRIME CG34039 DOWNSTREAM Lk EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	9688543	3R_9688543_SNP [dm3] 3R_13862821_SNP [dm6]	G	C	2.079e^-4	1	INTERGENIC
2L	6135806	2L_6135806_SNP [dm3] 2L_6135806_SNP [dm6]	C	T	2.099e^-4	1	INTERGENIC
3L	17362418	3L_17362418_SNP [dm3] 3L_17369318_SNP [dm6]	G	T	2.107e^-4	1	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_sens
3L	7165828	3L_7165828_SNP [dm3] 3L_7172728_SNP [dm6]	G	A	2.109e^-4	1	INTRON Dscam2
3R	23959839	3R_23959839_SNP [dm3] 3R_28134117_SNP [dm6]	C	A	2.117e^-4	1	INTERGENIC
2R	8246842	2R_8246842_SNP [dm3] 2R_12359337_SNP [dm6]	C	T	2.121e^-4	1	UPSTREAM CG30043 DOWNSTREAM CG30049 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3639540	3L_3639540_SNP [dm3] 3L_3639540_SNP [dm6]	T	C	2.132e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4496682	3L_4496682_SNP [dm3] 3L_4496682_SNP [dm6]	T	G	2.136e^-4	1	DOWNSTREAM CG13721 INTERGENIC
2R	6545038	2R_6545038_SNP [dm3] 2R_10657533_SNP [dm6]	C	G	2.139e^-4	1	EXON CR44452
X	20126450	X_20126450_SNP [dm3] X_20255424_SNP [dm6]	T	C	2.146e^-4	1	SYNONYMOUS_CODING CG17065 DOWNSTREAM Rab10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15030395	2R_15030395_SNP [dm3] 2R_19142890_SNP [dm6]	A	C	2.148e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13775791	3L_13775791_SNP [dm3] 3L_13782691_SNP [dm6]	C	T	2.149e^-4	1	INTRON bru-3
X	14798346	X_14798346_SNP [dm3] X_14904313_SNP [dm6]	A	G	2.154e^-4	1	SYNONYMOUS_CODING CG9512 INTRON Flo2
3L	3398596	3L_3398596_SNP [dm3] 3L_3398596_SNP [dm6]	C	T	2.160e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	27633498	3R_27633498_SNP [dm3] 3R_31807776_SNP [dm6]	G	A	2.170e^-4	1	SYNONYMOUS_CODING CG11576	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9070929	3R_9070929_SNP [dm3] 3R_13245207_SNP [dm6]	C	T	2.172e^-4	1	INTRON Ace	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4175762	3L_4175762_INS [dm3] 3L_4175762_INS [dm6]	T	TCAAAT	2.177e^-4	1	INTRON CG18675 & 1 other
3L	7091465	3L_7091465_SNP [dm3] 3L_7098365_SNP [dm6]	G	A	2.185e^-4	1	INTRON form3
3R	25381175	3R_25381175_SNP [dm3] 3R_29555453_SNP [dm6]	C	T	2.188e^-4	1	UPSTREAM Dr INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10629337	3R_10629337_SNP [dm3] 3R_14803615_SNP [dm6]	T	A	2.208e^-4	1	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14317880	2R_14317880_INS [dm3] 2R_18430375_INS [dm6]	T	TTCATTTAGCTTAAG...	2.212e^-4	1	UTR_3_PRIME CG30118 DOWNSTREAM CG30118 & 1 other
3L	3639469	3L_3639469_SNP [dm3] 3L_3639469_SNP [dm6]	A	T	2.218e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8129889	2R_8129889_SNP [dm3] 2R_12242384_SNP [dm6]	A	T	2.232e^-4	1	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	23959747	3R_23959747_SNP [dm3] 3R_28134025_SNP [dm6]	A	G	2.234e^-4	1	INTERGENIC
2L	15474692	2L_15474692_SNP [dm3] 2L_15474692_SNP [dm6]	G	C	2.240e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8133210	2R_8133210_SNP [dm3] 2R_12245705_SNP [dm6]	C	T	2.244e^-4	1	DOWNSTREAM CR44315 INTERGENIC
2L	17510137	2L_17510137_SNP [dm3] 2L_17510137_SNP [dm6]	C	T	2.244e^-4	1	SYNONYMOUS_CODING Dhc36C
2L	15241535	2L_15241535_SNP [dm3] 2L_15241535_SNP [dm6]	A	T	2.248e^-4	1	INTRON ZnT35C
3R	17292614	3R_17292614_INS [dm3] 3R_21466892_INS [dm6]	C	CC	2.254e^-4	1	DOWNSTREAM CR43453 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12608469	3L_12608469_SNP [dm3] 3L_12615369_SNP [dm6]	C	T	2.255e^-4	1	INTRON caup
3R	7341964	3R_7341964_SNP [dm3] 3R_11516242_SNP [dm6]	T	C	2.255e^-4	1	INTERGENIC
3R	25215463	3R_25215463_SNP [dm3] 3R_29389741_SNP [dm6]	C	T	2.258e^-4	1	INTRON Ptp99A
3R	16057676	3R_16057676_SNP [dm3] 3R_20231954_SNP [dm6]	G	A	2.258e^-4	1	INTRON Nlg4
2L	2940214	2L_2940214_SNP [dm3] 2L_2940214_SNP [dm6]	G	T	2.262e^-4	1	INTRON lilli
3L	17368283	3L_17368283_SNP [dm3] 3L_17375183_SNP [dm6]	T	A	2.269e^-4	1	INTRON Cad74A
3L	10438973	3L_10438973_SNP [dm3] 3L_10445873_SNP [dm6]	A	G	2.275e^-4	1	INTERGENIC
3R	14447938	3R_14447938_SNP [dm3] 3R_18622216_SNP [dm6]	C	T	2.276e^-4	1	UPSTREAM CG14304 INTRON qin
3L	10642940	3L_10642940_SNP [dm3] 3L_10649840_SNP [dm6]	G	A	2.282e^-4	1	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5550196	2L_5550196_SNP [dm3] 2L_5550196_SNP [dm6]	T	G	2.306e^-4	1	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12568879	3L_12568879_SNP [dm3] 3L_12575779_SNP [dm6]	C	T	2.309e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	16445743	2R_16445743_SNP [dm3] 2R_20558238_SNP [dm6]	T	G	2.310e^-4	1	SPLICE_SITE_REGION lms DOWNSTREAM Mgat1 INTRON lms	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24541441	3R_24541441_SNP [dm3] 3R_28715719_SNP [dm6]	G	A	2.317e^-4	1	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18629399	2L_18629399_SNP [dm3] 2L_18629399_SNP [dm6]	T	C	2.324e^-4	1	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2654033	2L_2654033_SNP [dm3] 2L_2654033_SNP [dm6]	C	T	2.339e^-4	1	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
X	16064029	X_16064029_SNP [dm3] X_16169996_SNP [dm6]	G	A	2.341e^-4	1	INTERGENIC
3R	23958968	3R_23958968_SNP [dm3] 3R_28133246_SNP [dm6]	A	G	2.343e^-4	1	INTERGENIC
3R	14031958	3R_14031958_SNP [dm3] 3R_18206236_SNP [dm6]	G	C	2.380e^-4	1	INTRON CG7985
3R	7302133	3R_7302133_SNP [dm3] 3R_11476411_SNP [dm6]	C	A	2.384e^-4	1	INTERGENIC
3R	24667214	3R_24667214_SNP [dm3] 3R_28841492_SNP [dm6]	A	C	2.391e^-4	1	INTRON Apc	TF binding site BDTNP1_TFBS_twi
3L	14888929	3L_14888929_SNP [dm3] 3L_14895829_SNP [dm6]	C	T	2.403e^-4	1	INTERGENIC
2R	2038886	2R_2038886_SNP [dm3] 2R_6151381_SNP [dm6]	T	A	2.408e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	15696526	3L_15696526_SNP [dm3] 3L_15703426_SNP [dm6]	T	A	2.416e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	15323863	2R_15323863_SNP [dm3] 2R_19436358_SNP [dm6]	C	T	2.419e^-4	1	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6130824	3L_6130824_SNP [dm3] 3L_6137724_SNP [dm6]	A	G	2.421e^-4	1	NON_SYNONYMOUS_CODING Lcp65Ae UPSTREAM Lcp65Af
X	8716465	X_8716465_INS [dm3] X_8822432_INS [dm6]	A	ACA	2.460e^-4	1	INTERGENIC
3R	22705804	3R_22705804_SNP [dm3] 3R_26880082_SNP [dm6]	C	T	2.461e^-4	1	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
2R	18334885	2R_18334885_SNP [dm3] 2R_22447380_SNP [dm6]	G	A	2.474e^-4	1	INTERGENIC
2L	17988388	2L_17988388_SNP [dm3] 2L_17988388_SNP [dm6]	T	C	2.479e^-4	1	UTR_3_PRIME CG5681
3L	21056245	3L_21056245_SNP [dm3] 3L_21063145_SNP [dm6]	T	C	2.497e^-4	1	INTRON siz
2L	1043348	2L_1043348_SNP [dm3] 2L_1043348_SNP [dm6]	A	T	2.500e^-4	1	UPSTREAM IA-2 INTRON IA-2
2L	8124545	2L_8124545_SNP [dm3] 2L_8124545_SNP [dm6]	G	C	2.508e^-4	1	NON_SYNONYMOUS_CODING CG8673 UPSTREAM mon2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20860680	X_20860680_SNP [dm3] X_20989653_SNP [dm6]	C	T	2.518e^-4	1	INTERGENIC
3R	23961135	3R_23961135_SNP [dm3] 3R_28135413_SNP [dm6]	C	A	2.523e^-4	1	INTERGENIC
2R	11283853	2R_11283853_SNP [dm3] 2R_15396348_SNP [dm6]	A	T	2.523e^-4	1	INTERGENIC
X	8716500	X_8716500_SNP [dm3] X_8822467_SNP [dm6]	T	A	2.527e^-4	1	INTERGENIC
3L	13733274	3L_13733274_SNP [dm3] 3L_13740174_SNP [dm6]	A	G	2.535e^-4	1	INTRON bru-3
2R	8133308	2R_8133308_INS [dm3] 2R_12245803_INS [dm6]	A	AA	2.537e^-4	1	DOWNSTREAM CR44315 INTERGENIC
2R	10380473	2R_10380473_SNP [dm3] 2R_14492968_SNP [dm6]	G	T	2.538e^-4	1	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2269637	X_2269637_SNP [dm3] X_2375604_SNP [dm6]	A	G	2.540e^-4	1	DOWNSTREAM PsGEF INTRON PsGEF
X	8716425	X_8716425_SNP [dm3] X_8822392_SNP [dm6]	C	A	2.543e^-4	1	INTERGENIC
3R	22770253	3R_22770253_SNP [dm3] 3R_26944531_SNP [dm6]	C	T	2.544e^-4	1	UTR_3_PRIME sda
3L	18386764	3L_18386764_SNP [dm3] 3L_18393664_SNP [dm6]	T	A	2.547e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16270571	2R_16270571_SNP [dm3] 2R_20383066_SNP [dm6]	G	T	2.552e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4175167	3L_4175167_SNP [dm3] 3L_4175167_SNP [dm6]	C	A	2.552e^-4	1	UTR_3_PRIME Teh4 INTRON CG18675
3L	13775755	3L_13775755_SNP [dm3] 3L_13782655_SNP [dm6]	G	C	2.564e^-4	1	INTRON bru-3
3R	16056206	3R_16056206_SNP [dm3] 3R_20230484_SNP [dm6]	T	A	2.567e^-4	1	INTRON Nlg4
2L	16290873	2L_16290873_SNP [dm3] 2L_16290873_SNP [dm6]	G	A	2.569e^-4	1	UTR_3_PRIME pkaap UPSTREAM CG17329
X	13266271	X_13266271_SNP [dm3] X_13372238_SNP [dm6]	C	A	2.571e^-4	1	INTRON CG1640
2L	4888285	2L_4888285_SNP [dm3] 2L_4888285_SNP [dm6]	G	T	2.591e^-4	1	INTERGENIC
3R	25379258	3R_25379258_SNP [dm3] 3R_29553536_SNP [dm6]	G	C	2.602e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	22705771	3R_22705771_SNP [dm3] 3R_26880049_SNP [dm6]	G	T	2.610e^-4	1	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3R	11591288	3R_11591288_SNP [dm3] 3R_15765566_SNP [dm6]	C	G	2.611e^-4	1	DOWNSTREAM CG5623 INTERGENIC
3R	7825512	3R_7825512_SNP [dm3] 3R_11999790_SNP [dm6]	C	A	2.611e^-4	1	INTRON Tk & 1 other
3R	19897539	3R_19897539_SNP [dm3] 3R_24071817_SNP [dm6]	C	T	2.622e^-4	1	INTRON 4EHP
3R	21192268	3R_21192268_SNP [dm3] 3R_25366546_SNP [dm6]	C	T	2.628e^-4	1	INTRON Fur1
2R	16270622	2R_16270622_SNP [dm3] 2R_20383117_SNP [dm6]	A	T	2.639e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26753705	3R_26753705_SNP [dm3] 3R_30927983_SNP [dm6]	T	G	2.640e^-4	1	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	6011067	3L_6011067_SNP [dm3] 3L_6017967_SNP [dm6]	A	T	2.655e^-4	1	INTRON PVRAP
3R	20419946	3R_20419946_SNP [dm3] 3R_24594224_SNP [dm6]	A	T	2.662e^-4	1	INTRON mld
3L	504609	3L_504609_SNP [dm3] 3L_504609_SNP [dm6]	C	T	2.664e^-4	1	INTRON klar
2L	1820066	2L_1820066_SNP [dm3] 2L_1820066_SNP [dm6]	G	A	2.680e^-4	1	INTERGENIC
3L	15261193	3L_15261193_SNP [dm3] 3L_15268093_SNP [dm6]	C	A	2.682e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	22279197	3R_22279197_DEL [dm3] 3R_26453475_DEL [dm6]	AGTGATCGT	A	2.687e^-4	1	INTRON CG5447
3R	22279208	3R_22279208_SNP [dm3] 3R_26453486_SNP [dm6]	T	A	2.687e^-4	1	INTRON CG5447
2R	17379226	2R_17379226_SNP [dm3] 2R_21491721_SNP [dm6]	C	T	2.689e^-4	1	INTRON Fkbp14
3L	3639532	3L_3639532_SNP [dm3] 3L_3639532_SNP [dm6]	G	T	2.701e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17538186	X_17538186_SNP [dm3] X_17644153_SNP [dm6]	C	T	2.704e^-4	1	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2L	15241604	2L_15241604_INS [dm3] 2L_15241604_INS [dm6]	G	GGATTTCGTGGA...	2.706e^-4	1	INTRON ZnT35C
2L	11230732	2L_11230732_SNP [dm3] 2L_11230732_SNP [dm6]	C	T	2.711e^-4	1	INTRON ab
3R	16056167	3R_16056167_SNP [dm3] 3R_20230445_SNP [dm6]	C	A	2.720e^-4	1	INTRON Nlg4
2R	20423126	2R_20423126_INS [dm3] 2R_24535603_INS [dm6]	A	AAAAA	2.721e^-4	1	UPSTREAM CG11413 & 1 other INTRON CG4622	TF binding site BDTNP1_TFBS_dl
3R	15977738	3R_15977738_SNP [dm3] 3R_20152016_SNP [dm6]	A	T	2.721e^-4	1	INTERGENIC
2L	15474668	2L_15474668_SNP [dm3] 2L_15474668_SNP [dm6]	T	C	2.733e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15594370	2L_15594370_SNP [dm3] 2L_15594370_SNP [dm6]	A	T	2.740e^-4	1	INTERGENIC
3L	4405998	3L_4405998_SNP [dm3] 3L_4405998_SNP [dm6]	A	C	2.742e^-4	1	UTR_5_PRIME CG15019 UPSTREAM DOR DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	16476495	2R_16476495_SNP [dm3] 2R_20588990_SNP [dm6]	A	T	2.743e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	3223237	3L_3223237_SNP [dm3] 3L_3223237_SNP [dm6]	T	C	2.744e^-4	1	UPSTREAM RpL28 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	14779629	2R_14779629_SNP [dm3] 2R_18892124_SNP [dm6]	A	C	2.744e^-4	1	INTRON sano
2L	2673361	2L_2673361_INS [dm3] 2L_2673361_INS [dm6]	C	CGATTGGC	2.762e^-4	1	INTERGENIC
3R	23951414	3R_23951414_SNP [dm3] 3R_28125692_SNP [dm6]	T	A	2.770e^-4	1	INTERGENIC
X	13380076	X_13380076_SNP [dm3] X_13486043_SNP [dm6]	T	A	2.773e^-4	1	INTRON Neto
X	8716464	X_8716464_SNP [dm3] X_8822431_SNP [dm6]	T	A	2.778e^-4	1	INTERGENIC
2L	520748	2L_520748_SNP [dm3] 2L_520748_SNP [dm6]	G	A	2.785e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	2611160	X_2611160_SNP [dm3] X_2717127_SNP [dm6]	C	T	2.787e^-4	1	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	9320529	3L_9320529_SNP [dm3] 3L_9327429_SNP [dm6]	C	T	2.793e^-4	1	INTERGENIC
X	9978086	X_9978086_SNP [dm3] X_10084053_SNP [dm6]	A	G	2.799e^-4	1	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6701482	2L_6701482_SNP [dm3] 2L_6701482_SNP [dm6]	A	G	2.801e^-4	1	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6458160	3R_6458160_SNP [dm3] 3R_10632438_SNP [dm6]	G	C	2.809e^-4	1	INTRON hth	TF binding site mE1_TFBS_cad
3R	16056095	3R_16056095_DEL [dm3] 3R_20230373_DEL [dm6]	TACGATATTTAATAGTTTCC...	C	2.821e^-4	1	INTRON Nlg4
3R	9886832	3R_9886832_SNP [dm3] 3R_14061110_SNP [dm6]	T	C	2.825e^-4	1	INTRON foxo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	17435556	3L_17435556_SNP [dm3] 3L_17442456_SNP [dm6]	G	C	2.832e^-4	1	INTRON CG18265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13342242	3L_13342242_SNP [dm3] 3L_13349142_SNP [dm6]	C	T	2.833e^-4	1	UPSTREAM CG17687 INTERGENIC
3R	12013273	3R_12013273_DEL [dm3] 3R_16187551_DEL [dm6]	AATAAGCCGCTGC...	A	2.842e^-4	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	2222975	3L_2222975_SNP [dm3] 3L_2222975_SNP [dm6]	A	T	2.849e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4888152	2L_4888152_SNP [dm3] 2L_4888152_SNP [dm6]	T	C	2.851e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8417491	2R_8417491_SNP [dm3] 2R_12529986_SNP [dm6]	A	T	2.853e^-4	1	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	21291012	X_21291012_SNP [dm3] X_21419985_SNP [dm6]	C	A	2.867e^-4	1	INTERGENIC
X	14611949	X_14611949_SNP [dm3] X_14717916_SNP [dm6]	T	A	2.869e^-4	1	DOWNSTREAM hog INTRON NetB
2L	4847132	2L_4847132_SNP [dm3] 2L_4847132_SNP [dm6]	G	A	2.870e^-4	1	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6272569	3R_6272569_SNP [dm3] 3R_10446847_SNP [dm6]	A	G	2.870e^-4	1	INTERGENIC
3R	21567746	3R_21567746_SNP [dm3] 3R_25742024_SNP [dm6]	A	G	2.893e^-4	1	INTRON LpR1
3R	23961249	3R_23961249_SNP [dm3] 3R_28135527_SNP [dm6]	A	T	2.896e^-4	1	INTERGENIC
3R	9879517	3R_9879517_SNP [dm3] 3R_14053795_SNP [dm6]	A	T	2.902e^-4	1	INTERGENIC
3L	15691193	3L_15691193_SNP [dm3] 3L_15698093_SNP [dm6]	T	C	2.907e^-4	1	SYNONYMOUS_CODING comm2
2L	2018188	2L_2018188_SNP [dm3] 2L_2018188_SNP [dm6]	A	C	2.916e^-4	1	INTRON CG4238
2L	15187012	2L_15187012_INS [dm3] 2L_15187012_INS [dm6]	A	AA	2.918e^-4	1	INTRON CG4168
2L	6766143	2L_6766143_SNP [dm3] 2L_6766143_SNP [dm6]	C	T	2.926e^-4	1	SYNONYMOUS_CODING CG11321 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13227186	3L_13227186_SNP [dm3] 3L_13234086_SNP [dm6]	C	T	2.945e^-4	1	INTRON caps
3R	15981618	3R_15981618_SNP [dm3] 3R_20155896_SNP [dm6]	T	A	2.957e^-4	1	INTERGENIC
3R	15993535	3R_15993535_SNP [dm3] 3R_20167813_SNP [dm6]	A	G	2.957e^-4	1	INTERGENIC
3L	14301870	3L_14301870_SNP [dm3] 3L_14308770_SNP [dm6]	A	G	2.964e^-4	1	INTRON fz
3R	15995370	3R_15995370_SNP [dm3] 3R_20169648_SNP [dm6]	C	G	2.977e^-4	1	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14405193	X_14405193_SNP [dm3] X_14511160_SNP [dm6]	A	C	2.987e^-4	1	INTERGENIC
2L	15359642	2L_15359642_SNP [dm3] 2L_15359642_SNP [dm6]	C	T	2.994e^-4	1	INTERGENIC
3L	3198732	3L_3198732_SNP [dm3] 3L_3198732_SNP [dm6]	T	A	2.994e^-4	1	UPSTREAM gry INTRON CG32276	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12013061	3R_12013061_SNP [dm3] 3R_16187339_SNP [dm6]	T	C	2.996e^-4	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8086224	2L_8086224_SNP [dm3] 2L_8086224_SNP [dm6]	G	A	2.998e^-4	1	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15979543	3R_15979543_INS [dm3] 3R_20153821_INS [dm6]	C	CC	3.002e^-4	1	INTERGENIC
3R	22821536	3R_22821536_SNP [dm3] 3R_26995814_SNP [dm6]	C	T	3.003e^-4	1	SYNONYMOUS_CODING TwdlC	TF binding site mE1_TFBS_chinmo
3R	16644657	3R_16644657_SNP [dm3] 3R_20818935_SNP [dm6]	T	A	3.003e^-4	1	UPSTREAM CG17270 DOWNSTREAM CG17271 INTERGENIC
3R	13122910	3R_13122910_SNP [dm3] 3R_17297188_SNP [dm6]	A	G	3.007e^-4	1	INTERGENIC
3L	17177345	3L_17177345_SNP [dm3] 3L_17184245_SNP [dm6]	T	A	3.008e^-4	1	INTRON Rbp6
2R	1893895	2R_1893895_SNP [dm3] 2R_6006390_SNP [dm6]	A	G	3.008e^-4	1	INTRON Src42A
3L	15157311	3L_15157311_SNP [dm3] 3L_15164211_SNP [dm6]	A	G	3.022e^-4	1	UPSTREAM CG7011 INTERGENIC
3R	15095255	3R_15095255_SNP [dm3] 3R_19269533_SNP [dm6]	C	A	3.025e^-4	1	INTERGENIC
2L	4847904	2L_4847904_SNP [dm3] 2L_4847904_SNP [dm6]	T	A	3.027e^-4	1	NON_SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4496626	3L_4496626_SNP [dm3] 3L_4496626_SNP [dm6]	A	G	3.028e^-4	1	DOWNSTREAM CG13721 INTERGENIC
3R	16056022	3R_16056022_SNP [dm3] 3R_20230300_SNP [dm6]	T	A	3.032e^-4	1	INTRON Nlg4
3R	13662328	3R_13662328_SNP [dm3] 3R_17836606_SNP [dm6]	A	C	3.043e^-4	1	INTRON tinc
3R	15210298	3R_15210298_SNP [dm3] 3R_19384576_SNP [dm6]	C	G	3.064e^-4	1	INTRON Ino80
2R	18444424	2R_18444424_SNP [dm3] 2R_22556919_SNP [dm6]	C	T	3.078e^-4	1	INTRON px	TF binding site mE1_TFBS_cad
2L	1833483	2L_1833483_SNP [dm3] 2L_1833483_SNP [dm6]	C	T	3.088e^-4	1	UPSTREAM c-cup INTERGENIC
3L	9317134	3L_9317134_SNP [dm3] 3L_9324034_SNP [dm6]	T	C	3.137e^-4	1	INTERGENIC
3L	15261894	3L_15261894_SNP [dm3] 3L_15268794_SNP [dm6]	C	T	3.137e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21787495	3R_21787495_SNP [dm3] 3R_25961773_SNP [dm6]	G	T	3.139e^-4	1	UPSTREAM boss DOWNSTREAM CG14540 INTERGENIC
3R	23320073	3R_23320073_SNP [dm3] 3R_27494351_SNP [dm6]	C	T	3.146e^-4	1	INTERGENIC
3L	2311391	3L_2311391_SNP [dm3] 3L_2311391_SNP [dm6]	A	C	3.147e^-4	1	INTERGENIC
3L	5140619	3L_5140619_SNP [dm3] 3L_5147519_SNP [dm6]	C	T	3.174e^-4	1	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7755332	2L_7755332_SNP [dm3] 2L_7755332_SNP [dm6]	A	G	3.175e^-4	1	UPSTREAM CG14538 INTRON CG7196
3R	13905813	3R_13905813_SNP [dm3] 3R_18080091_SNP [dm6]	T	C	3.179e^-4	1	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20659440	3R_20659440_SNP [dm3] 3R_24833718_SNP [dm6]	A	C	3.180e^-4	1	UPSTREAM sosie INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16159936	X_16159936_SNP [dm3] X_16265903_SNP [dm6]	A	T	3.195e^-4	1	INTRON CG12507
2L	13592130	2L_13592130_SNP [dm3] 2L_13592130_SNP [dm6]	A	C	3.199e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	18358755	2R_18358755_SNP [dm3] 2R_22471250_SNP [dm6]	C	T	3.202e^-4	1	INTRON CG10384	TF binding site mE1_TFBS_chinmo
3R	7826644	3R_7826644_SNP [dm3] 3R_12000922_SNP [dm6]	T	G	3.207e^-4	1	INTRON Tk & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	7826652	3R_7826652_SNP [dm3] 3R_12000930_SNP [dm6]	T	G	3.207e^-4	1	INTRON Tk & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2732958	2L_2732958_SNP [dm3] 2L_2732958_SNP [dm6]	G	A	3.214e^-4	1	INTRON CG31689
3R	13662378	3R_13662378_SNP [dm3] 3R_17836656_SNP [dm6]	G	T	3.222e^-4	1	INTRON tinc
3L	7837089	3L_7837089_SNP [dm3] 3L_7843989_SNP [dm6]	G	A	3.229e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	3.238e^-4	1	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
X	19924021	X_19924021_DEL [dm3] X_20029988_DEL [dm6]	CTCGACTCAAC...	C	3.240e^-4	1	INTRON Dop2R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9105265	X_9105265_SNP [dm3] X_9211232_SNP [dm6]	C	T	3.253e^-4	1	UPSTREAM CG12119 INTERGENIC
3R	13105304	3R_13105304_SNP [dm3] 3R_17279582_SNP [dm6]	G	A	3.254e^-4	1	INTERGENIC
X	8716477	X_8716477_SNP [dm3] X_8822444_SNP [dm6]	G	A	3.260e^-4	1	INTERGENIC
3L	3639444	3L_3639444_DEL [dm3] 3L_3639444_DEL [dm6]	CTTAAGACAAA...	C	3.266e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10382645	2R_10382645_SNP [dm3] 2R_14495140_SNP [dm6]	T	C	3.267e^-4	1	INTRON L	TF binding site mE1_TFBS_cad
3R	24287347	3R_24287347_SNP [dm3] 3R_28461625_SNP [dm6]	A	T	3.269e^-4	1	INTRON beat-VI
3R	9064326	3R_9064326_SNP [dm3] 3R_13238604_SNP [dm6]	T	A	3.282e^-4	1	INTRON Ace
3L	4406252	3L_4406252_SNP [dm3] 3L_4406252_SNP [dm6]	T	A	3.285e^-4	1	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2222950	3L_2222950_SNP [dm3] 3L_2222950_SNP [dm6]	T	A	3.287e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15305428	2R_15305428_DEL [dm3] 2R_19417923_DEL [dm6]	AAATTTAATTATTCA...	A	3.289e^-4	1	INTRON hts
3R	23961245	3R_23961245_SNP [dm3] 3R_28135523_SNP [dm6]	C	A	3.290e^-4	1	INTERGENIC
3L	18938454	3L_18938454_SNP [dm3] 3L_18945354_SNP [dm6]	T	C	3.292e^-4	1	INTRON CG32204
2R	15685481	2R_15685481_SNP [dm3] 2R_19797976_SNP [dm6]	T	G	3.300e^-4	1	INTERGENIC
2L	7973477	2L_7973477_SNP [dm3] 2L_7973477_SNP [dm6]	C	A	3.315e^-4	1	INTRON Snoo
X	2611335	X_2611335_SNP [dm3] X_2717302_SNP [dm6]	G	T	3.316e^-4	1	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	17387121	3L_17387121_SNP [dm3] 3L_17394021_SNP [dm6]	A	G	3.321e^-4	1	INTERGENIC
3R	12013272	3R_12013272_SNP [dm3] 3R_16187550_SNP [dm6]	G	A	3.329e^-4	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	10225756	3R_10225756_SNP [dm3] 3R_14400034_SNP [dm6]	A	G	3.334e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_Trl
2R	18301380	2R_18301380_SNP [dm3] 2R_22413875_SNP [dm6]	T	C	3.336e^-4	1	UTR_3_PRIME qkr58E-1 INTRON qkr58E-1	TF binding site BDTNP1_TFBS_z
2R	3023833	2R_3023833_SNP [dm3] 2R_7136328_SNP [dm6]	A	T	3.344e^-4	1	INTERGENIC
2L	16168533	2L_16168533_SNP [dm3] 2L_16168533_SNP [dm6]	G	A	3.354e^-4	1	UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
3L	15433825	3L_15433825_SNP [dm3] 3L_15440725_SNP [dm6]	G	C	3.359e^-4	1	INTERGENIC
2L	17884289	2L_17884289_SNP [dm3] 2L_17884289_SNP [dm6]	C	T	3.374e^-4	1	INTERGENIC
3L	17366051	3L_17366051_SNP [dm3] 3L_17372951_SNP [dm6]	T	G	3.376e^-4	1	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8505298	2L_8505298_SNP [dm3] 2L_8505298_SNP [dm6]	T	C	3.408e^-4	1	INTRON Dh31
2L	15516747	2L_15516747_DEL [dm3] 2L_15516747_DEL [dm6]	GAA	G	3.425e^-4	1	UPSTREAM CR44864 INTERGENIC
X	1010295	X_1010295_SNP [dm3] X_1116262_SNP [dm6]	C	T	3.441e^-4	1	INTRON CG3655
3L	4406060	3L_4406060_SNP [dm3] 3L_4406060_SNP [dm6]	T	C	3.453e^-4	1	UPSTREAM DOR & 1 other DOWNSTREAM Syx17 INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	25042873	3R_25042873_SNP [dm3] 3R_29217151_SNP [dm6]	C	A	3.456e^-4	1	UPSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site mE1_TFBS_sens
3R	24142045	3R_24142045_SNP [dm3] 3R_28316323_SNP [dm6]	C	A	3.461e^-4	1	INTERGENIC
3R	24142047	3R_24142047_INS [dm3] 3R_28316325_INS [dm6]	A	AT	3.461e^-4	1	INTERGENIC
3L	1495927	3L_1495927_SNP [dm3] 3L_1495927_SNP [dm6]	C	A	3.465e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl
2R	10380488	2R_10380488_SNP [dm3] 2R_14492983_SNP [dm6]	G	A	3.466e^-4	1	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10380818	2R_10380818_SNP [dm3] 2R_14493313_SNP [dm6]	A	T	3.466e^-4	1	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12381413	2L_12381413_SNP [dm3] 2L_12381413_SNP [dm6]	C	T	3.466e^-4	1	INTRON bru-2
X	4676067	X_4676067_SNP [dm3] X_4782034_SNP [dm6]	C	T	3.495e^-4	1	DOWNSTREAM CG15471 INTERGENIC
2R	7369078	2R_7369078_SNP [dm3] 2R_11481573_SNP [dm6]	A	T	3.501e^-4	1	INTRON inv
2L	15460823	2L_15460823_SNP [dm3] 2L_15460823_SNP [dm6]	A	T	3.504e^-4	1	INTERGENIC
2R	13665419	2R_13665419_SNP [dm3] 2R_17777914_SNP [dm6]	G	A	3.515e^-4	1	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9764151	2R_9764151_SNP [dm3] 2R_13876646_SNP [dm6]	G	A	3.515e^-4	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15095228	3R_15095228_SNP [dm3] 3R_19269506_SNP [dm6]	T	A	3.516e^-4	1	INTERGENIC
2L	16256179	2L_16256179_DEL [dm3] 2L_16256179_DEL [dm6]	AAA	A	3.518e^-4	1	UPSTREAM PRL-1 INTRON PRL-1	TF binding site mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10310321	3L_10310321_SNP [dm3] 3L_10317221_SNP [dm6]	A	T	3.519e^-4	1	INTERGENIC
3L	504571	3L_504571_DEL [dm3] 3L_504571_DEL [dm6]	TAAGCTTTTGTCT...	T	3.525e^-4	1	INTRON klar
3L	3639524	3L_3639524_SNP [dm3] 3L_3639524_SNP [dm6]	T	A	3.527e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4381049	X_4381049_SNP [dm3] X_4487016_SNP [dm6]	C	G	3.527e^-4	1	INTRON CR32773
3L	8149142	3L_8149142_SNP [dm3] 3L_8156042_SNP [dm6]	G	T	3.529e^-4	1	INTRON CG42445
2L	13142151	2L_13142151_SNP [dm3] 2L_13142151_SNP [dm6]	G	A	3.546e^-4	1	DOWNSTREAM CG9928 INTERGENIC
2R	8158733	2R_8158733_SNP [dm3] 2R_12271228_SNP [dm6]	T	C	3.574e^-4	1	INTRON Cam	TF binding site mE1_TFBS_Trl
2R	17007625	2R_17007625_SNP [dm3] 2R_21120120_SNP [dm6]	C	T	3.575e^-4	1	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7888745	3R_7888745_SNP [dm3] 3R_12063023_SNP [dm6]	T	A	3.601e^-4	1	UPSTREAM CG14740 INTERGENIC
3L	10432167	3L_10432167_DEL [dm3] 3L_10439067_DEL [dm6]	TT	T	3.606e^-4	1	INTERGENIC
2R	17865573	2R_17865573_SNP [dm3] 2R_21978068_SNP [dm6]	A	G	3.611e^-4	1	DOWNSTREAM Gr58b & 1 other INTERGENIC
3L	3639465	3L_3639465_SNP [dm3] 3L_3639465_SNP [dm6]	A	T	3.611e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1760030	3L_1760030_SNP [dm3] 3L_1760030_SNP [dm6]	T	A	3.614e^-4	1	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8660335	2R_8660335_SNP [dm3] 2R_12772830_SNP [dm6]	A	T	3.617e^-4	1	INTERGENIC
3L	12643734	3L_12643734_SNP [dm3] 3L_12650634_SNP [dm6]	C	G	3.617e^-4	1	EXON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	12567535	3R_12567535_SNP [dm3] 3R_16741813_SNP [dm6]	C	T	3.623e^-4	1	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	13641839	X_13641839_SNP [dm3] X_13747806_SNP [dm6]	C	T	3.634e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10694379	2L_10694379_SNP [dm3] 2L_10694379_SNP [dm6]	C	G	3.636e^-4	1	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
3L	6011066	3L_6011066_SNP [dm3] 3L_6017966_SNP [dm6]	G	C	3.653e^-4	1	INTRON PVRAP
2L	1837097	2L_1837097_DEL [dm3] 2L_1837097_DEL [dm6]	TTT	T	3.654e^-4	1	INTRON wry
2L	1830098	2L_1830098_SNP [dm3] 2L_1830098_SNP [dm6]	C	T	3.661e^-4	1	INTERGENIC
3L	18128289	3L_18128289_SNP [dm3] 3L_18135189_SNP [dm6]	G	T	3.662e^-4	1	DOWNSTREAM CR44669 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	13733772	2R_13733772_SNP [dm3] 2R_17846267_SNP [dm6]	T	C	3.664e^-4	1	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_Trl
3R	15095254	3R_15095254_SNP [dm3] 3R_19269532_SNP [dm6]	G	A	3.671e^-4	1	INTERGENIC
3R	8856415	3R_8856415_SNP [dm3] 3R_13030693_SNP [dm6]	C	G	3.671e^-4	1	UPSTREAM l_3_87Df & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	4406243	3L_4406243_SNP [dm3] 3L_4406243_SNP [dm6]	T	G	3.681e^-4	1	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16063854	3R_16063854_SNP [dm3] 3R_20238132_SNP [dm6]	A	G	3.681e^-4	1	SYNONYMOUS_CODING Nlg4
2L	7755434	2L_7755434_SNP [dm3] 2L_7755434_SNP [dm6]	T	C	3.686e^-4	1	UPSTREAM CG14538 INTRON CG7196
3L	17382652	3L_17382652_SNP [dm3] 3L_17389552_SNP [dm6]	A	T	3.691e^-4	1	UPSTREAM CG13731 INTERGENIC
3R	9067174	3R_9067174_SNP [dm3] 3R_13241452_SNP [dm6]	T	A	3.691e^-4	1	INTRON Ace
X	7679918	X_7679918_SNP [dm3] X_7785885_SNP [dm6]	A	C	3.692e^-4	1	INTERGENIC
3L	10845662	3L_10845662_SNP [dm3] 3L_10852562_SNP [dm6]	G	C	3.706e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13122908	3R_13122908_SNP [dm3] 3R_17297186_SNP [dm6]	A	C	3.706e^-4	1	INTERGENIC
2R	8651440	2R_8651440_SNP [dm3] 2R_12763935_SNP [dm6]	T	C	3.712e^-4	1	DOWNSTREAM CG12374 INTERGENIC
3L	18096974	3L_18096974_SNP [dm3] 3L_18103874_SNP [dm6]	A	T	3.720e^-4	1	INTRON CG13698
3R	1885192	3R_1885192_SNP [dm3] 3R_6059470_SNP [dm6]	C	G	3.722e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10055292	3R_10055292_SNP [dm3] 3R_14229570_SNP [dm6]	T	A	3.723e^-4	1	UPSTREAM CG9624 INTERGENIC
3R	9086218	3R_9086218_DEL [dm3] 3R_13260496_DEL [dm6]	AT	A	3.723e^-4	1	UPSTREAM Ace INTRON CG11686
2R	1894068	2R_1894068_SNP [dm3] 2R_6006563_SNP [dm6]	C	T	3.725e^-4	1	INTRON Src42A
2R	18649905	2R_18649905_SNP [dm3] 2R_22762400_SNP [dm6]	G	T	3.731e^-4	1	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4747503	2R_4747503_SNP [dm3] 2R_8859998_SNP [dm6]	G	A	3.735e^-4	1	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb mE1_TFBS_Trl
3R	13489040	3R_13489040_SNP [dm3] 3R_17663318_SNP [dm6]	C	T	3.739e^-4	1	NON_SYNONYMOUS_CODING CG14322
3R	27871349	3R_27871349_DEL [dm3] 3R_32045627_DEL [dm6]	CCCTATAACTTTTTAAATAA...	C	3.744e^-4	1	UTR_3_PRIME krz
2L	11379379	2L_11379379_SNP [dm3] 2L_11379379_SNP [dm6]	G	T	3.751e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	5000340	3L_5000340_SNP [dm3] 3L_5000340_SNP [dm6]	T	C	3.765e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15241738	2L_15241738_SNP [dm3] 2L_15241738_SNP [dm6]	T	A	3.774e^-4	1	INTRON ZnT35C
3L	17615315	3L_17615315_SNP [dm3] 3L_17622215_SNP [dm6]	G	A	3.775e^-4	1	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	2919868	2L_2919868_INS [dm3] 2L_2919868_INS [dm6]	C	CC	3.794e^-4	1	INTRON lilli
3L	13266809	3L_13266809_SNP [dm3] 3L_13273709_SNP [dm6]	C	G	3.795e^-4	1	INTRON caps
2R	11334770	2R_11334770_SNP [dm3] 2R_15447265_SNP [dm6]	G	A	3.799e^-4	1	INTRON CG43729
3L	8567604	3L_8567604_SNP [dm3] 3L_8574504_SNP [dm6]	C	T	3.810e^-4	1	UTR_3_PRIME CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad
3L	4487618	3L_4487618_SNP [dm3] 3L_4487618_SNP [dm6]	A	T	3.814e^-4	1	INTRON CG13722
3R	14373555	3R_14373555_SNP [dm3] 3R_18547833_SNP [dm6]	G	T	3.816e^-4	1	INTERGENIC
X	14130334	X_14130334_SNP [dm3] X_14236301_SNP [dm6]	A	C	3.818e^-4	1	NON_SYNONYMOUS_CODING Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8564001	3L_8564001_SNP [dm3] 3L_8570901_SNP [dm6]	A	G	3.818e^-4	1	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea
3L	7128162	3L_7128162_SNP [dm3] 3L_7135062_SNP [dm6]	C	G	3.819e^-4	1	START_GAINED melt UTR_5_PRIME melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	1841853	2L_1841853_SNP [dm3] 2L_1841853_SNP [dm6]	G	A	3.825e^-4	1	INTRON wry
3L	17363905	3L_17363905_SNP [dm3] 3L_17370805_SNP [dm6]	G	A	3.828e^-4	1	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13905967	3L_13905967_SNP [dm3] 3L_13912867_SNP [dm6]	G	C	3.830e^-4	1	INTRON Rgl
X	20945383	X_20945383_SNP [dm3] X_21074356_SNP [dm6]	T	G	3.844e^-4	1	INTRON bves
3L	14572665	3L_14572665_SNP [dm3] 3L_14579565_SNP [dm6]	C	G	3.844e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	20440488	3R_20440488_SNP [dm3] 3R_24614766_SNP [dm6]	C	T	3.852e^-4	1	INTRON mld
X	4381322	X_4381322_SNP [dm3] X_4487289_SNP [dm6]	A	T	3.853e^-4	1	INTRON CR32773
X	5385558	X_5385558_SNP [dm3] X_5491525_SNP [dm6]	T	C	3.869e^-4	1	INTRON SPR	TF binding site mE1_TFBS_chinmo
X	4862283	X_4862283_DEL [dm3] X_4968250_DEL [dm6]	AACA	A	3.879e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4589798	X_4589798_SNP [dm3] X_4695765_SNP [dm6]	G	A	3.882e^-4	1	INTRON ctp
3L	6011069	3L_6011069_SNP [dm3] 3L_6017969_SNP [dm6]	A	G	3.882e^-4	1	INTRON PVRAP
2R	1950194	2R_1950194_SNP [dm3] 2R_6062689_SNP [dm6]	G	C	3.887e^-4	1	UTR_5_PRIME CCHa2-R
2L	12388222	2L_12388222_SNP [dm3] 2L_12388222_SNP [dm6]	G	A	3.892e^-4	1	INTRON bru-2
3R	9070911	3R_9070911_SNP [dm3] 3R_13245189_SNP [dm6]	C	T	3.907e^-4	1	INTRON Ace	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8937497	X_8937497_SNP [dm3] X_9043464_SNP [dm6]	A	T	3.919e^-4	1	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19774376	2L_19774376_DEL [dm3] 2L_19774376_DEL [dm6]	CCATTTACCCTTTTAC...	C	3.927e^-4	1	DOWNSTREAM CdGAPr INTERGENIC
3L	1493226	3L_1493226_SNP [dm3] 3L_1493226_SNP [dm6]	G	T	3.928e^-4	1	SYNONYMOUS_CODING CG12084	TF binding site mE1_TFBS_cad
3L	16257640	3L_16257640_SNP [dm3] 3L_16264540_SNP [dm6]	G	A	3.935e^-4	1	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	14572650	3L_14572650_SNP [dm3] 3L_14579550_SNP [dm6]	G	T	3.942e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14572651	3L_14572651_DEL [dm3] 3L_14579551_DEL [dm6]	AG	A	3.942e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9507554	2L_9507554_SNP [dm3] 2L_9507554_SNP [dm6]	C	A	3.954e^-4	1	INTRON CG33298
2L	9507614	2L_9507614_SNP [dm3] 2L_9507614_SNP [dm6]	A	G	3.954e^-4	1	INTRON CG33298
2L	1932000	2L_1932000_SNP [dm3] 2L_1932000_SNP [dm6]	T	G	3.957e^-4	1	INTRON CG7337
2R	1893804	2R_1893804_SNP [dm3] 2R_6006299_SNP [dm6]	G	A	3.967e^-4	1	INTRON Src42A
2R	19906177	2R_19906177_SNP [dm3] 2R_24018654_SNP [dm6]	C	T	3.976e^-4	1	SYNONYMOUS_CODING CG3121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15288821	3L_15288821_SNP [dm3] 3L_15295721_SNP [dm6]	A	G	3.978e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17856809	2R_17856809_INS [dm3] 2R_21969304_INS [dm6]	G	GG	3.996e^-4	1	INTRON ppk9
2R	15675842	2R_15675842_SNP [dm3] 2R_19788337_SNP [dm6]	C	T	4.006e^-4	1	EXON CR45231
3L	14572915	3L_14572915_SNP [dm3] 3L_14579815_SNP [dm6]	A	G	4.009e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7131254	3R_7131254_SNP [dm3] 3R_11305532_SNP [dm6]	T	G	4.016e^-4	1	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
3R	7131285	3R_7131285_SNP [dm3] 3R_11305563_SNP [dm6]	T	C	4.016e^-4	1	EXON CR31386	TF binding site BDTNP1_TFBS_twi
X	16551286	X_16551286_SNP [dm3] X_16657253_SNP [dm6]	C	A	4.020e^-4	1	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10694367	2L_10694367_SNP [dm3] 2L_10694367_SNP [dm6]	C	A	4.030e^-4	1	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2R	15396091	2R_15396091_SNP [dm3] 2R_19508586_SNP [dm6]	C	G	4.033e^-4	1	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4381023	X_4381023_SNP [dm3] X_4486990_SNP [dm6]	C	T	4.041e^-4	1	INTRON CR32773
3L	4175659	3L_4175659_SNP [dm3] 3L_4175659_SNP [dm6]	G	A	4.054e^-4	1	SYNONYMOUS_CODING Teh4 INTRON CG18675
2R	15669348	2R_15669348_SNP [dm3] 2R_19781843_SNP [dm6]	G	T	4.056e^-4	1	INTERGENIC
2R	8651447	2R_8651447_SNP [dm3] 2R_12763942_SNP [dm6]	C	T	4.057e^-4	1	DOWNSTREAM CG12374 INTERGENIC
2L	8217978	2L_8217978_SNP [dm3] 2L_8217978_SNP [dm6]	A	G	4.063e^-4	1	UTR_5_PRIME CG8292 DOWNSTREAM Snx6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5551004	2L_5551004_SNP [dm3] 2L_5551004_SNP [dm6]	A	C	4.068e^-4	1	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	5665830	3L_5665830_SNP [dm3] 3L_5672730_SNP [dm6]	A	C	4.072e^-4	1	UTR_5_PRIME sif INTRON sif
2L	11380086	2L_11380086_SNP [dm3] 2L_11380086_SNP [dm6]	T	A	4.080e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	2084007	2R_2084007_SNP [dm3] 2R_6196502_SNP [dm6]	G	A	4.085e^-4	1	UPSTREAM Ptr DOWNSTREAM CG30432 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5515471	2L_5515471_SNP [dm3] 2L_5515471_SNP [dm6]	C	T	4.091e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1196066	2L_1196066_SNP [dm3] 2L_1196066_SNP [dm6]	T	G	4.092e^-4	1	INTRON CG5001
X	20107805	X_20107805_SNP [dm3] X_20236731_SNP [dm6]	C	G	4.098e^-4	1	UPSTREAM sw INTERGENIC
2R	4949562	2R_4949562_SNP [dm3] 2R_9062057_SNP [dm6]	C	G	4.099e^-4	1	UPSTREAM ana & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	7601161	3L_7601161_DEL [dm3] 3L_7608061_DEL [dm6]	AA	A	4.101e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18933969	3R_18933969_SNP [dm3] 3R_23108247_SNP [dm6]	C	G	4.102e^-4	1	INTRON CG13830
2L	1948033	2L_1948033_SNP [dm3] 2L_1948033_SNP [dm6]	A	T	4.102e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	18850947	3R_18850947_SNP [dm3] 3R_23025225_SNP [dm6]	T	C	4.104e^-4	1	SYNONYMOUS_CODING lmd UPSTREAM lmd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2081776	2R_2081776_SNP [dm3] 2R_6194271_SNP [dm6]	A	G	4.115e^-4	1	INTRON Ptr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	16058551	3R_16058551_SNP [dm3] 3R_20232829_SNP [dm6]	C	G	4.115e^-4	1	INTRON Nlg4
2L	1824475	2L_1824475_SNP [dm3] 2L_1824475_SNP [dm6]	C	T	4.125e^-4	1	NON_SYNONYMOUS_CODING CG31664
2R	11831090	2R_11831090_SNP [dm3] 2R_15943585_SNP [dm6]	G	A	4.129e^-4	1	UPSTREAM CG30093 INTRON Cyp4aa1
2R	3020124	2R_3020124_SNP [dm3] 2R_7132619_SNP [dm6]	A	T	4.130e^-4	1	UPSTREAM Cyp9b2 INTERGENIC
2R	18942909	2R_18942909_SNP [dm3] 2R_23055386_SNP [dm6]	G	A	4.134e^-4	1	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20483568	X_20483568_SNP [dm3] X_20612541_SNP [dm6]	T	C	4.152e^-4	1	INTRON RunxA
2L	7361573	2L_7361573_SNP [dm3] 2L_7361573_SNP [dm6]	T	C	4.154e^-4	1	INTERGENIC
3L	15283919	3L_15283919_SNP [dm3] 3L_15290819_SNP [dm6]	A	G	4.158e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11203822	2L_11203822_SNP [dm3] 2L_11203822_SNP [dm6]	A	G	4.167e^-4	1	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15412720	3R_15412720_SNP [dm3] 3R_19586998_SNP [dm6]	C	A	4.176e^-4	1	DOWNSTREAM snoRNA:Me18S-A1374 INTRON Dys
2L	11380211	2L_11380211_SNP [dm3] 2L_11380211_SNP [dm6]	T	A	4.183e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	14572672	3L_14572672_SNP [dm3] 3L_14579572_SNP [dm6]	T	A	4.185e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14572685	3L_14572685_DEL [dm3] 3L_14579585_DEL [dm6]	CCTGTCTGAGC...	C	4.185e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9841742	3R_9841742_SNP [dm3] 3R_14016020_SNP [dm6]	A	C	4.191e^-4	1	INTRON rdx
3R	14277991	3R_14277991_SNP [dm3] 3R_18452269_SNP [dm6]	T	C	4.200e^-4	1	INTRON fru
3L	19688061	3L_19688061_SNP [dm3] 3L_19694961_SNP [dm6]	C	T	4.204e^-4	1	INTRON verm
3R	17670937	3R_17670937_SNP [dm3] 3R_21845215_SNP [dm6]	G	T	4.205e^-4	1	SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
3L	3639497	3L_3639497_SNP [dm3] 3L_3639497_SNP [dm6]	T	A	4.210e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7917394	3R_7917394_SNP [dm3] 3R_12091672_SNP [dm6]	A	C	4.212e^-4	1	INTERGENIC
2R	17854072	2R_17854072_SNP [dm3] 2R_21966567_SNP [dm6]	A	C	4.217e^-4	1	INTRON ppk9
2R	2501096	2R_2501096_SNP [dm3] 2R_6613591_SNP [dm6]	A	G	4.221e^-4	1	UPSTREAM jing INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	2118406	2R_2118406_SNP [dm3] 2R_6230901_SNP [dm6]	C	G	4.221e^-4	1	INTRON bin3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15458823	3R_15458823_SNP [dm3] 3R_19633101_SNP [dm6]	T	A	4.222e^-4	1	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13905809	3R_13905809_SNP [dm3] 3R_18080087_SNP [dm6]	A	C	4.226e^-4	1	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8158866	2R_8158866_INS [dm3] 2R_12271361_INS [dm6]	C	CACCC	4.241e^-4	1	INTRON Cam	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4999529	3L_4999529_INS [dm3] 3L_4999529_INS [dm6]	G	GTAGGGCTGTCA...	4.244e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	3195448	X_3195448_DEL [dm3] X_3301415_DEL [dm6]	TTTG	T	4.245e^-4	1	INTRON dnc
3L	8550711	3L_8550711_SNP [dm3] 3L_8557611_SNP [dm6]	G	C	4.248e^-4	1	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12387354	2L_12387354_SNP [dm3] 2L_12387354_SNP [dm6]	T	A	4.254e^-4	1	INTRON bru-2
2L	12387355	2L_12387355_SNP [dm3] 2L_12387355_SNP [dm6]	C	T	4.254e^-4	1	INTRON bru-2
2R	17149181	2R_17149181_SNP [dm3] 2R_21261676_SNP [dm6]	A	G	4.254e^-4	1	INTRON Rgk3
2L	4847122	2L_4847122_SNP [dm3] 2L_4847122_SNP [dm6]	C	A	4.262e^-4	1	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8651337	2R_8651337_SNP [dm3] 2R_12763832_SNP [dm6]	A	C	4.268e^-4	1	DOWNSTREAM CG12374 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19406397	2R_19406397_SNP [dm3] 2R_23518874_SNP [dm6]	G	C	4.270e^-4	1	DOWNSTREAM RabX1 INTERGENIC
2L	1828995	2L_1828995_SNP [dm3] 2L_1828995_SNP [dm6]	C	G	4.282e^-4	1	INTERGENIC
X	5328399	X_5328399_SNP [dm3] X_5434366_SNP [dm6]	C	T	4.282e^-4	1	INTRON CR44471
2L	1946856	2L_1946856_SNP [dm3] 2L_1946856_SNP [dm6]	C	T	4.283e^-4	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	10464404	3R_10464404_SNP [dm3] 3R_14638682_SNP [dm6]	T	C	4.286e^-4	1	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4888154	2L_4888154_SNP [dm3] 2L_4888154_SNP [dm6]	T	C	4.286e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19750793	3R_19750793_SNP [dm3] 3R_23925071_SNP [dm6]	T	C	4.293e^-4	1	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8628119	3L_8628119_SNP [dm3] 3L_8635019_SNP [dm6]	C	T	4.297e^-4	1	SYNONYMOUS_CODING Zasp66 UPSTREAM Cdc6
2R	17861669	2R_17861669_SNP [dm3] 2R_21974164_SNP [dm6]	T	C	4.298e^-4	1	INTRON CG9304	TF binding site mE1_TFBS_HSA
2R	15074799	2R_15074799_SNP [dm3] 2R_19187294_SNP [dm6]	A	T	4.305e^-4	1	INTRON hppy
2L	7755394	2L_7755394_SNP [dm3] 2L_7755394_SNP [dm6]	A	G	4.314e^-4	1	UPSTREAM CG14538 INTRON CG7196
3L	10390394	3L_10390394_SNP [dm3] 3L_10397294_SNP [dm6]	A	T	4.316e^-4	1	INTERGENIC
2R	16114611	2R_16114611_SNP [dm3] 2R_20227106_SNP [dm6]	G	A	4.318e^-4	1	INTERGENIC
3L	8400480	3L_8400480_SNP [dm3] 3L_8407380_SNP [dm6]	T	G	4.318e^-4	1	NON_SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
2R	1912326	2R_1912326_SNP [dm3] 2R_6024821_SNP [dm6]	G	T	4.329e^-4	1	INTERGENIC
X	8716419	X_8716419_SNP [dm3] X_8822386_SNP [dm6]	A	T	4.332e^-4	1	INTERGENIC
2R	17272226	2R_17272226_SNP [dm3] 2R_21384721_SNP [dm6]	T	C	4.335e^-4	1	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13906045	3L_13906045_SNP [dm3] 3L_13912945_SNP [dm6]	A	G	4.340e^-4	1	INTRON Rgl
3L	4556565	3L_4556565_SNP [dm3] 3L_4556565_SNP [dm6]	C	T	4.340e^-4	1	UPSTREAM CG42540 INTRON CG42540	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10858317	2L_10858317_SNP [dm3] 2L_10858317_SNP [dm6]	C	A	4.341e^-4	1	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	8859558	3R_8859558_SNP [dm3] 3R_13033836_SNP [dm6]	T	G	4.346e^-4	1	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15776129	2L_15776129_SNP [dm3] 2L_15776129_SNP [dm6]	C	T	4.350e^-4	1	DOWNSTREAM CG43760 INTERGENIC
3L	14769465	3L_14769465_SNP [dm3] 3L_14776365_SNP [dm6]	G	C	4.353e^-4	1	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3639542	3L_3639542_SNP [dm3] 3L_3639542_SNP [dm6]	G	A	4.354e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22732289	3R_22732289_SNP [dm3] 3R_26906567_SNP [dm6]	G	T	4.370e^-4	1	INTRON T48	regulatory region REDfly_CRMs
3L	14572639	3L_14572639_SNP [dm3] 3L_14579539_SNP [dm6]	A	G	4.374e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8566829	3L_8566829_SNP [dm3] 3L_8573729_SNP [dm6]	T	C	4.377e^-4	1	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea DOWNSTREAM CG6638	TF binding site mE1_TFBS_cad
3R	9208161	3R_9208161_SNP [dm3] 3R_13382439_SNP [dm6]	G	A	4.377e^-4	1	UPSTREAM mRpS21 & 1 other DOWNSTREAM CG8870 INTRON Droj2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8569680	3L_8569680_SNP [dm3] 3L_8576580_SNP [dm6]	C	T	4.382e^-4	1	UPSTREAM CG43078 & 1 other INTERGENIC
3R	23287447	3R_23287447_SNP [dm3] 3R_27461725_SNP [dm6]	A	C	4.386e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	9313129	3L_9313129_SNP [dm3] 3L_9320029_SNP [dm6]	C	G	4.396e^-4	1	INTERGENIC
2L	528267	2L_528267_SNP [dm3] 2L_528267_SNP [dm6]	T	A	4.404e^-4	1	INTRON ush	regulatory region REDfly_CRMs
2L	17021611	2L_17021611_SNP [dm3] 2L_17021611_SNP [dm6]	G	A	4.411e^-4	1	INTERGENIC
2L	12382626	2L_12382626_SNP [dm3] 2L_12382626_SNP [dm6]	C	G	4.414e^-4	1	INTRON bru-2
2R	994818	2R_994818_SNP [dm3] 2R_5107313_SNP [dm6]	T	G	4.424e^-4	1	INTERGENIC	transposable element FlyBase
2L	1946857	2L_1946857_SNP [dm3] 2L_1946857_SNP [dm6]	T	C	4.427e^-4	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	25485347	3R_25485347_SNP [dm3] 3R_29659625_SNP [dm6]	T	G	4.428e^-4	1	INTRON Dop1R2
2L	2654034	2L_2654034_SNP [dm3] 2L_2654034_SNP [dm6]	G	A	4.435e^-4	1	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
3L	14310788	3L_14310788_SNP [dm3] 3L_14317688_SNP [dm6]	T	G	4.442e^-4	1	INTRON fz
2L	1823244	2L_1823244_SNP [dm3] 2L_1823244_SNP [dm6]	C	A	4.443e^-4	1	SYNONYMOUS_CODING CG31933 DOWNSTREAM CG31664
2L	1824305	2L_1824305_DEL [dm3] 2L_1824305_DEL [dm6]	TAGGAAA	T	4.443e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
3R	11842069	3R_11842069_SNP [dm3] 3R_16016347_SNP [dm6]	A	G	4.444e^-4	1	SYNONYMOUS_CODING GATAe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	6674968	2L_6674968_SNP [dm3] 2L_6674968_SNP [dm6]	G	A	4.457e^-4	1	SYNONYMOUS_CODING cort DOWNSTREAM CG34310 & 1 other	TF binding site mE1_TFBS_chinmo
2L	1828986	2L_1828986_SNP [dm3] 2L_1828986_SNP [dm6]	C	G	4.466e^-4	1	INTERGENIC
3R	8859570	3R_8859570_SNP [dm3] 3R_13033848_SNP [dm6]	A	C	4.467e^-4	1	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12383604	2L_12383604_SNP [dm3] 2L_12383604_SNP [dm6]	A	G	4.476e^-4	1	INTRON bru-2
2L	12385828	2L_12385828_DEL [dm3] 2L_12385828_DEL [dm6]	AA	A	4.476e^-4	1	INTRON bru-2
2R	11422426	2R_11422426_SNP [dm3] 2R_15534921_SNP [dm6]	A	G	4.476e^-4	1	INTRON CG30471
3L	1499443	3L_1499443_SNP [dm3] 3L_1499443_SNP [dm6]	T	C	4.477e^-4	1	UTR_5_PRIME pUf68 UPSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site mE1_TFBS_cad
2L	15547009	2L_15547009_SNP [dm3] 2L_15547009_SNP [dm6]	G	T	4.484e^-4	1	UPSTREAM Skadu INTERGENIC
3L	15121860	3L_15121860_SNP [dm3] 3L_15128760_SNP [dm6]	A	G	4.484e^-4	1	NON_SYNONYMOUS_CODING CG13457 DOWNSTREAM Cep135
3L	22117297	3L_22117297_DEL [dm3] 3L_22124197_DEL [dm6]	AAA	A	4.486e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	19167465	X_19167465_SNP [dm3] X_19273432_SNP [dm6]	G	T	4.487e^-4	1	UTR_3_PRIME CG32537 DOWNSTREAM Vav
2L	15546650	2L_15546650_SNP [dm3] 2L_15546650_SNP [dm6]	T	C	4.491e^-4	1	UPSTREAM Skadu INTERGENIC
3L	3639494	3L_3639494_SNP [dm3] 3L_3639494_SNP [dm6]	T	G	4.506e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21139883	3R_21139883_SNP [dm3] 3R_25314161_SNP [dm6]	C	A	4.507e^-4	1	UPSTREAM CG31087 DOWNSTREAM CG10559 INTERGENIC
2L	8629740	2L_8629740_SNP [dm3] 2L_8629740_SNP [dm6]	T	C	4.517e^-4	1	INTRON Sema-1a
X	20484180	X_20484180_SNP [dm3] X_20613153_SNP [dm6]	G	A	4.522e^-4	1	INTRON RunxA
3L	9259880	3L_9259880_SNP [dm3] 3L_9266780_SNP [dm6]	T	A	4.531e^-4	1	INTRON GluRIB
2R	2352900	2R_2352900_SNP [dm3] 2R_6465395_SNP [dm6]	A	T	4.537e^-4	1	INTERGENIC	transposable element FlyBase
X	14559371	X_14559371_SNP [dm3] X_14665338_SNP [dm6]	T	G	4.537e^-4	1	INTERGENIC
3R	8859567	3R_8859567_SNP [dm3] 3R_13033845_SNP [dm6]	T	C	4.540e^-4	1	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18097324	3L_18097324_SNP [dm3] 3L_18104224_SNP [dm6]	A	T	4.540e^-4	1	INTRON CG13698
2R	16137473	2R_16137473_SNP [dm3] 2R_20249968_SNP [dm6]	A	T	4.543e^-4	1	INTRON CG9864	TF binding site mE1_TFBS_cad
2R	994825	2R_994825_SNP [dm3] 2R_5107320_SNP [dm6]	T	C	4.551e^-4	1	INTERGENIC	transposable element FlyBase
3L	14310778	3L_14310778_INS [dm3] 3L_14317678_INS [dm6]	T	TTCGAT	4.556e^-4	1	INTRON fz
3R	10359402	3R_10359402_SNP [dm3] 3R_14533680_SNP [dm6]	A	T	4.568e^-4	1	INTRON Pde6
2R	13546349	2R_13546349_SNP [dm3] 2R_17658844_SNP [dm6]	T	C	4.597e^-4	1	INTRON CCHa1-R
X	1007863	X_1007863_SNP [dm3] X_1113830_SNP [dm6]	T	G	4.604e^-4	1	INTRON CG3655
3L	14572649	3L_14572649_SNP [dm3] 3L_14579549_SNP [dm6]	A	T	4.605e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15546045	2L_15546045_SNP [dm3] 2L_15546045_SNP [dm6]	A	G	4.618e^-4	1	INTERGENIC
2L	11304453	2L_11304453_SNP [dm3] 2L_11304453_SNP [dm6]	C	T	4.631e^-4	1	INTERGENIC
2L	16379412	2L_16379412_SNP [dm3] 2L_16379412_SNP [dm6]	T	C	4.634e^-4	1	INTERGENIC
2R	16439927	2R_16439927_SNP [dm3] 2R_20552422_SNP [dm6]	A	C	4.640e^-4	1	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	3875370	2L_3875370_SNP [dm3] 2L_3875370_SNP [dm6]	T	C	4.642e^-4	1	INTRON capu	TF binding site mE1_TFBS_chinmo
3R	13874338	3R_13874338_SNP [dm3] 3R_18048616_SNP [dm6]	G	A	4.643e^-4	1	INTRON htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	996160	2R_996160_SNP [dm3] 2R_5108655_SNP [dm6]	A	T	4.651e^-4	1	INTERGENIC	transposable element FlyBase
2L	3875036	2L_3875036_SNP [dm3] 2L_3875036_SNP [dm6]	G	C	4.655e^-4	1	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
2L	15241745	2L_15241745_SNP [dm3] 2L_15241745_SNP [dm6]	T	A	4.664e^-4	1	INTRON ZnT35C
3L	2386725	3L_2386725_SNP [dm3] 3L_2386725_SNP [dm6]	C	T	4.665e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23247390	3R_23247390_SNP [dm3] 3R_27421668_SNP [dm6]	C	T	4.666e^-4	1	INTRON side
3L	14509041	3L_14509041_SNP [dm3] 3L_14515941_SNP [dm6]	A	C	4.672e^-4	1	INTRON bbg
X	14074259	X_14074259_INS [dm3] X_14180226_INS [dm6]	A	AAAA	4.677e^-4	1	UPSTREAM CG11584 INTERGENIC
3R	9157223	3R_9157223_SNP [dm3] 3R_13331501_SNP [dm6]	G	T	4.679e^-4	1	SYNONYMOUS_CODING PK2-R2
3R	23958986	3R_23958986_SNP [dm3] 3R_28133264_SNP [dm6]	A	T	4.679e^-4	1	INTERGENIC
3L	5315623	3L_5315623_SNP [dm3] 3L_5322523_SNP [dm6]	C	T	4.692e^-4	1	INTERGENIC
2L	15546299	2L_15546299_INS [dm3] 2L_15546299_INS [dm6]	A	AGAAGATAATT...	4.711e^-4	1	INTERGENIC
2L	15594379	2L_15594379_SNP [dm3] 2L_15594379_SNP [dm6]	A	T	4.713e^-4	1	INTERGENIC
X	6534629	X_6534629_SNP [dm3] X_6640596_SNP [dm6]	T	C	4.726e^-4	1	INTRON pigs
2R	1335954	2R_1335954_SNP [dm3] 2R_5448449_SNP [dm6]	G	T	4.732e^-4	1	DOWNSTREAM laccase2 INTRON laccase2	transposable element FlyBase
3L	13346094	3L_13346094_SNP [dm3] 3L_13352994_SNP [dm6]	C	T	4.735e^-4	1	SYNONYMOUS_CODING CG17687
X	20911023	X_20911023_INS [dm3] X_21039996_INS [dm6]	T	TT	4.746e^-4	1	DOWNSTREAM Ntf-2 INTRON CG15449 & 1 other
2L	9897653	2L_9897653_SNP [dm3] 2L_9897653_SNP [dm6]	C	T	4.748e^-4	1	UPSTREAM RpS2 DOWNSTREAM Muc30E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13028647	3R_13028647_INS [dm3] 3R_17202925_INS [dm6]	C	CC	4.750e^-4	1	UPSTREAM Mur89F INTERGENIC
2L	11380058	2L_11380058_SNP [dm3] 2L_11380058_SNP [dm6]	T	A	4.756e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	5515381	2L_5515381_SNP [dm3] 2L_5515381_SNP [dm6]	C	T	4.767e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15107190	X_15107190_SNP [dm3] X_15213157_SNP [dm6]	A	G	4.784e^-4	1	INTERGENIC
2R	15409471	2R_15409471_SNP [dm3] 2R_19521966_SNP [dm6]	T	C	4.786e^-4	1	UTR_3_PRIME sm
3L	2441366	3L_2441366_SNP [dm3] 3L_2441366_SNP [dm6]	T	A	4.808e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	2920578	2L_2920578_SNP [dm3] 2L_2920578_SNP [dm6]	T	A	4.814e^-4	1	INTRON lilli
3R	17539980	3R_17539980_SNP [dm3] 3R_21714258_SNP [dm6]	T	A	4.818e^-4	1	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15030810	2R_15030810_SNP [dm3] 2R_19143305_SNP [dm6]	T	C	4.822e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18514925	2R_18514925_SNP [dm3] 2R_22627420_SNP [dm6]	A	G	4.823e^-4	1	INTRON CG33143
2L	17988094	2L_17988094_SNP [dm3] 2L_17988094_SNP [dm6]	G	C	4.824e^-4	1	NON_SYNONYMOUS_CODING CG5681
2L	12372903	2L_12372903_SNP [dm3] 2L_12372903_SNP [dm6]	G	T	4.824e^-4	1	INTRON bru-2
2L	12372908	2L_12372908_SNP [dm3] 2L_12372908_SNP [dm6]	A	T	4.824e^-4	1	INTRON bru-2
3L	5072545	3L_5072545_SNP [dm3] 3L_5072545_SNP [dm6]	A	T	4.825e^-4	1	INTRON Con
3R	24678153	3R_24678153_SNP [dm3] 3R_28852431_SNP [dm6]	C	A	4.826e^-4	1	INTRON spg
3L	8564016	3L_8564016_SNP [dm3] 3L_8570916_SNP [dm6]	A	G	4.832e^-4	1	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea
2L	14913062	2L_14913062_SNP [dm3] 2L_14913062_SNP [dm6]	G	C	4.835e^-4	1	INTRON CG42313
2L	6747691	2L_6747691_SNP [dm3] 2L_6747691_SNP [dm6]	G	C	4.848e^-4	1	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	4.853e^-4	1	INTRON CG15365
3L	3398621	3L_3398621_SNP [dm3] 3L_3398621_SNP [dm6]	T	C	4.859e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18758389	2R_18758389_SNP [dm3] 2R_22870866_SNP [dm6]	G	T	4.859e^-4	1	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
2L	21073692	2L_21073692_SNP [dm3] 2L_21073692_SNP [dm6]	A	G	4.865e^-4	1	INTERGENIC
X	8385540	X_8385540_DEL [dm3] X_8491507_DEL [dm6]	AATAAAA	A	4.870e^-4	1	INTRON CG33181	TF binding site BDTNP1_TFBS_dl
3L	18128285	3L_18128285_SNP [dm3] 3L_18135185_SNP [dm6]	T	C	4.873e^-4	1	DOWNSTREAM CR44669 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	23961180	3R_23961180_SNP [dm3] 3R_28135458_SNP [dm6]	T	A	4.873e^-4	1	INTERGENIC
3R	16020458	3R_16020458_DEL [dm3] 3R_20194736_DEL [dm6]	AA	A	4.884e^-4	1	INTERGENIC
3R	10414883	3R_10414883_SNP [dm3] 3R_14589161_SNP [dm6]	T	C	4.892e^-4	1	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18850962	3R_18850962_SNP [dm3] 3R_23025240_SNP [dm6]	A	G	4.899e^-4	1	SYNONYMOUS_CODING lmd UPSTREAM lmd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7916918	3R_7916918_SNP [dm3] 3R_12091196_SNP [dm6]	A	G	4.900e^-4	1	UPSTREAM CG14741 INTERGENIC
3L	13345764	3L_13345764_SNP [dm3] 3L_13352664_SNP [dm6]	A	G	4.905e^-4	1	SYNONYMOUS_CODING CG17687
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	4.905e^-4	1	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25042831	3R_25042831_SNP [dm3] 3R_29217109_SNP [dm6]	G	A	4.906e^-4	1	UPSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site mE1_TFBS_sens
2L	15546426	2L_15546426_SNP [dm3] 2L_15546426_SNP [dm6]	A	T	4.909e^-4	1	INTERGENIC
3R	16056153	3R_16056153_DEL [dm3] 3R_20230431_DEL [dm6]	TTT	T	4.918e^-4	1	INTRON Nlg4
2R	8133237	2R_8133237_SNP [dm3] 2R_12245732_SNP [dm6]	C	T	4.925e^-4	1	DOWNSTREAM CR44315 INTERGENIC
2L	3468664	2L_3468664_SNP [dm3] 2L_3468664_SNP [dm6]	A	G	4.930e^-4	1	SYNONYMOUS_CODING CG3238	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11576783	2R_11576783_INS [dm3] 2R_15689278_INS [dm6]	T	TTT	4.946e^-4	1	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16159982	X_16159982_SNP [dm3] X_16265949_SNP [dm6]	A	C	4.950e^-4	1	INTRON CG12507
2L	13125396	2L_13125396_SNP [dm3] 2L_13125396_SNP [dm6]	G	A	4.951e^-4	1	INTERGENIC
3L	8542053	3L_8542053_INS [dm3] 3L_8548953_INS [dm6]	A	AGAA	4.953e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	16114609	2R_16114609_SNP [dm3] 2R_20227104_SNP [dm6]	T	A	4.956e^-4	1	INTERGENIC
2R	19312299	2R_19312299_SNP [dm3] 2R_23424776_SNP [dm6]	C	G	4.959e^-4	1	INTRON CG9815
3R	13488252	3R_13488252_SNP [dm3] 3R_17662530_SNP [dm6]	T	G	4.964e^-4	1	SYNONYMOUS_CODING CG14322
2R	15601715	2R_15601715_SNP [dm3] 2R_19714210_SNP [dm6]	C	T	4.988e^-4	1	SYNONYMOUS_CODING CG8517 DOWNSTREAM Obp56f	TF binding site mE1_TFBS_cad
2L	5210904	2L_5210904_SNP [dm3] 2L_5210904_SNP [dm6]	A	G	5.003e^-4	1	INTRON Cyp28d1
2L	14380481	2L_14380481_SNP [dm3] 2L_14380481_SNP [dm6]	A	T	5.008e^-4	1	INTRON ppk
2R	17854077	2R_17854077_SNP [dm3] 2R_21966572_SNP [dm6]	A	T	5.010e^-4	1	INTRON ppk9
3L	1386656	3L_1386656_SNP [dm3] 3L_1386656_SNP [dm6]	C	G	5.012e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo
3R	20799233	3R_20799233_SNP [dm3] 3R_24973511_SNP [dm6]	C	A	5.017e^-4	1	INTERGENIC
3L	4921861	3L_4921861_SNP [dm3] 3L_4921861_SNP [dm6]	G	T	5.021e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	14654718	X_14654718_SNP [dm3] X_14760685_SNP [dm6]	G	C	5.021e^-4	1	INTRON CG15890
2L	1819338	2L_1819338_SNP [dm3] 2L_1819338_SNP [dm6]	T	C	5.024e^-4	1	INTERGENIC
X	19167362	X_19167362_SNP [dm3] X_19273329_SNP [dm6]	T	G	5.027e^-4	1	DOWNSTREAM CG32537 & 1 other INTERGENIC
2L	1946849	2L_1946849_DEL [dm3] 2L_1946849_DEL [dm6]	TTAGAT	T	5.027e^-4	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	8548711	3L_8548711_SNP [dm3] 3L_8555611_SNP [dm6]	G	A	5.027e^-4	1	INTRON rhea
2R	18369189	2R_18369189_SNP [dm3] 2R_22481684_SNP [dm6]	G	A	5.029e^-4	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15600922	2R_15600922_SNP [dm3] 2R_19713417_SNP [dm6]	T	A	5.035e^-4	1	UTR_5_PRIME Obp56f UPSTREAM CR44509 & 1 other DOWNSTREAM Obp56e
3R	23959651	3R_23959651_SNP [dm3] 3R_28133929_SNP [dm6]	C	G	5.037e^-4	1	INTERGENIC
X	20319721	X_20319721_SNP [dm3] X_20448694_SNP [dm6]	A	G	5.040e^-4	1	UPSTREAM CG32506 INTERGENIC
2R	9358314	2R_9358314_SNP [dm3] 2R_13470809_SNP [dm6]	A	G	5.042e^-4	1	INTRON arr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	12372900	2L_12372900_SNP [dm3] 2L_12372900_SNP [dm6]	A	T	5.044e^-4	1	INTRON bru-2
2L	9172140	2L_9172140_INS [dm3] 2L_9172140_INS [dm6]	T	TTTTAT	5.058e^-4	1	INTRON tai
3R	7341005	3R_7341005_SNP [dm3] 3R_11515283_SNP [dm6]	G	A	5.062e^-4	1	INTERGENIC
2R	15470811	2R_15470811_SNP [dm3] 2R_19583306_SNP [dm6]	T	C	5.062e^-4	1	INTRON sm
3R	13921348	3R_13921348_SNP [dm3] 3R_18095626_SNP [dm6]	G	A	5.063e^-4	1	INTRON sr
X	10812311	X_10812311_SNP [dm3] X_10918278_SNP [dm6]	A	T	5.065e^-4	1	NON_SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	11495407	X_11495407_DEL [dm3] X_11601374_DEL [dm6]	GGGGAGGG	G	5.066e^-4	1	INTRON rho-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	12681224	X_12681224_SNP [dm3] X_12787191_SNP [dm6]	C	T	5.074e^-4	1	UTR_3_PRIME Pde9
3L	3199166	3L_3199166_SNP [dm3] 3L_3199166_SNP [dm6]	C	T	5.075e^-4	1	UPSTREAM CG32276 INTRON gry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	10711285	3R_10711285_SNP [dm3] 3R_14885563_SNP [dm6]	A	C	5.084e^-4	1	UPSTREAM CG33331 & 1 other INTRON Rrp6	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2R	15937160	2R_15937160_SNP [dm3] 2R_20049655_SNP [dm6]	G	T	5.094e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11223222	X_11223222_SNP [dm3] X_11329189_SNP [dm6]	C	T	5.095e^-4	1	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15470600	2R_15470600_SNP [dm3] 2R_19583095_SNP [dm6]	C	T	5.097e^-4	1	INTRON sm
2R	17876469	2R_17876469_SNP [dm3] 2R_21988964_SNP [dm6]	T	C	5.099e^-4	1	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13487388	3R_13487388_SNP [dm3] 3R_17661666_SNP [dm6]	G	A	5.099e^-4	1	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
X	13641817	X_13641817_SNP [dm3] X_13747784_SNP [dm6]	C	A	5.102e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16031483	3R_16031483_SNP [dm3] 3R_20205761_SNP [dm6]	T	G	5.105e^-4	1	INTRON Nlg4
3R	20847916	3R_20847916_SNP [dm3] 3R_25022194_SNP [dm6]	A	G	5.121e^-4	1	UTR_3_PRIME tnc
3L	21060400	3L_21060400_SNP [dm3] 3L_21067300_SNP [dm6]	G	T	5.122e^-4	1	UPSTREAM siz INTRON siz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	15030364	2R_15030364_SNP [dm3] 2R_19142859_SNP [dm6]	T	G	5.137e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18128287	3L_18128287_SNP [dm3] 3L_18135187_SNP [dm6]	T	A	5.139e^-4	1	DOWNSTREAM CR44669 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18535985	3R_18535985_SNP [dm3] 3R_22710263_SNP [dm6]	T	A	5.149e^-4	1	NON_SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15601013	2R_15601013_SNP [dm3] 2R_19713508_SNP [dm6]	A	T	5.150e^-4	1	UPSTREAM CR44509 & 1 other DOWNSTREAM Obp56e INTRON Obp56f
3R	23959869	3R_23959869_SNP [dm3] 3R_28134147_SNP [dm6]	G	A	5.158e^-4	1	INTERGENIC
X	8716420	X_8716420_SNP [dm3] X_8822387_SNP [dm6]	G	A	5.161e^-4	1	INTERGENIC
2R	15678134	2R_15678134_SNP [dm3] 2R_19790629_SNP [dm6]	C	G	5.165e^-4	1	DOWNSTREAM CR45231 INTERGENIC
X	12608603	X_12608603_SNP [dm3] X_12714570_SNP [dm6]	A	T	5.169e^-4	1	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
2R	8160512	2R_8160512_SNP [dm3] 2R_12273007_SNP [dm6]	C	T	5.176e^-4	1	INTRON Cam
X	9135374	X_9135374_SNP [dm3] X_9241341_SNP [dm6]	C	T	5.179e^-4	1	NON_SYNONYMOUS_CODING mxc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22732301	3R_22732301_SNP [dm3] 3R_26906579_SNP [dm6]	T	G	5.181e^-4	1	INTRON T48	regulatory region REDfly_CRMs
2L	15546696	2L_15546696_SNP [dm3] 2L_15546696_SNP [dm6]	C	A	5.184e^-4	1	UPSTREAM Skadu INTERGENIC
2R	11941271	2R_11941271_SNP [dm3] 2R_16053766_SNP [dm6]	T	A	5.190e^-4	1	INTRON CG8405
3L	6304684	3L_6304684_SNP [dm3] 3L_6311584_SNP [dm6]	G	T	5.197e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8133174	2R_8133174_SNP [dm3] 2R_12245669_SNP [dm6]	T	C	5.224e^-4	1	UPSTREAM CG43244 INTERGENIC
3R	11606351	3R_11606351_SNP [dm3] 3R_15780629_SNP [dm6]	T	C	5.228e^-4	1	SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_sens
2L	5218089	2L_5218089_DEL [dm3] 2L_5218089_DEL [dm6]	TTG	T	5.230e^-4	1	UTR_5_PRIME TpnC25D UPSTREAM TpnC25D DOWNSTREAM tkv INTRON TpnC25D	TF binding site mE1_TFBS_sens
2R	8651361	2R_8651361_SNP [dm3] 2R_12763856_SNP [dm6]	G	A	5.231e^-4	1	DOWNSTREAM CG12374 INTERGENIC
3R	23247392	3R_23247392_SNP [dm3] 3R_27421670_SNP [dm6]	A	G	5.236e^-4	1	INTRON side
2R	1928179	2R_1928179_DEL [dm3] 2R_6040674_DEL [dm6]	TAT	A	5.238e^-4	1	UPSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22279174	3R_22279174_SNP [dm3] 3R_26453452_SNP [dm6]	A	C	5.243e^-4	1	INTRON CG5447
2L	15460805	2L_15460805_SNP [dm3] 2L_15460805_SNP [dm6]	A	G	5.247e^-4	1	INTERGENIC
2R	16569786	2R_16569786_SNP [dm3] 2R_20682281_SNP [dm6]	A	T	5.253e^-4	1	INTERGENIC
3R	23960882	3R_23960882_SNP [dm3] 3R_28135160_SNP [dm6]	T	C	5.259e^-4	1	INTERGENIC
3L	17607665	3L_17607665_SNP [dm3] 3L_17614565_SNP [dm6]	C	A	5.285e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1824277	2L_1824277_INS [dm3] 2L_1824277_INS [dm6]	T	GTGA	5.286e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
2L	1824285	2L_1824285_SNP [dm3] 2L_1824285_SNP [dm6]	A	G	5.286e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
2L	1824288	2L_1824288_SNP [dm3] 2L_1824288_SNP [dm6]	T	A	5.286e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
2L	1824289	2L_1824289_SNP [dm3] 2L_1824289_SNP [dm6]	G	A	5.286e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
3R	16573533	3R_16573533_SNP [dm3] 3R_20747811_SNP [dm6]	T	C	5.293e^-4	1	DOWNSTREAM Prosalpha4T1 INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3076529	2R_3076529_SNP [dm3] 2R_7189024_SNP [dm6]	C	T	5.296e^-4	1	INTRON pk
3L	13200454	3L_13200454_INS [dm3] 3L_13207354_INS [dm6]	A	AACAGCAGCA	5.305e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13619083	2L_13619083_SNP [dm3] 2L_13619083_SNP [dm6]	C	T	5.305e^-4	1	INTRON kuz
2L	15547057	2L_15547057_SNP [dm3] 2L_15547057_SNP [dm6]	C	T	5.309e^-4	1	UPSTREAM Skadu INTERGENIC
2R	9662489	2R_9662489_SNP [dm3] 2R_13774984_SNP [dm6]	G	A	5.309e^-4	1	SYNONYMOUS_CODING Cpr50Ca
2R	19907256	2R_19907256_SNP [dm3] 2R_24019733_SNP [dm6]	G	A	5.315e^-4	1	SYNONYMOUS_CODING CG3121 DOWNSTREAM CG3907	TF binding site mE1_TFBS_HSA
2R	19192158	2R_19192158_SNP [dm3] 2R_23304635_SNP [dm6]	A	G	5.320e^-4	1	INTERGENIC
3R	10359399	3R_10359399_SNP [dm3] 3R_14533677_SNP [dm6]	A	C	5.320e^-4	1	INTRON Pde6
2L	1819579	2L_1819579_INS [dm3] 2L_1819579_INS [dm6]	G	GGAAAGCTGGAGCTGAG...	5.321e^-4	1	INTERGENIC
2R	8160202	2R_8160202_SNP [dm3] 2R_12272697_SNP [dm6]	G	A	5.325e^-4	1	INTRON Cam
3R	21897711	3R_21897711_SNP [dm3] 3R_26071989_SNP [dm6]	G	A	5.331e^-4	1	UPSTREAM CR44950 INTERGENIC
3R	17017197	3R_17017197_SNP [dm3] 3R_21191475_SNP [dm6]	C	T	5.336e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2R	15030371	2R_15030371_SNP [dm3] 2R_19142866_SNP [dm6]	G	A	5.336e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9301442	3L_9301442_SNP [dm3] 3L_9308342_SNP [dm6]	G	T	5.339e^-4	1	INTERGENIC
3L	17326171	3L_17326171_SNP [dm3] 3L_17333071_SNP [dm6]	T	G	5.346e^-4	1	UPSTREAM CR44563 INTERGENIC
3L	9574553	3L_9574553_SNP [dm3] 3L_9581453_SNP [dm6]	C	G	5.357e^-4	1	SYNONYMOUS_CODING CG42673
2L	583317	2L_583317_SNP [dm3] 2L_583317_SNP [dm6]	C	A	5.364e^-4	1	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24636764	3R_24636764_SNP [dm3] 3R_28811042_SNP [dm6]	G	A	5.367e^-4	1	NON_SYNONYMOUS_CODING wdn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
X	12694341	X_12694341_SNP [dm3] X_12800308_SNP [dm6]	T	C	5.381e^-4	1	INTRON Pde9
2R	5415581	2R_5415581_SNP [dm3] 2R_9528076_SNP [dm6]	G	C	5.388e^-4	1	INTRON brp	TF binding site mE1_TFBS_chinmo
2L	9556463	2L_9556463_SNP [dm3] 2L_9556463_SNP [dm6]	T	C	5.389e^-4	1	INTRON jp
2L	11380092	2L_11380092_SNP [dm3] 2L_11380092_SNP [dm6]	G	A	5.392e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	5947092	3L_5947092_DEL [dm3] 3L_5953992_DEL [dm6]	AACTGTTTTGGTA...	A	5.399e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5947174	3L_5947174_SNP [dm3] 3L_5954074_SNP [dm6]	C	T	5.399e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5947177	3L_5947177_SNP [dm3] 3L_5954077_SNP [dm6]	C	A	5.399e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5796879	2L_5796879_SNP [dm3] 2L_5796879_SNP [dm6]	A	G	5.415e^-4	1	INTRON CG9171
3R	9158057	3R_9158057_SNP [dm3] 3R_13332335_SNP [dm6]	C	G	5.418e^-4	1	UTR_5_PRIME PK2-R2
3R	22705672	3R_22705672_SNP [dm3] 3R_26879950_SNP [dm6]	A	G	5.419e^-4	1	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
2L	2770875	2L_2770875_SNP [dm3] 2L_2770875_SNP [dm6]	G	A	5.434e^-4	1	UTR_3_PRIME CG2862 UPSTREAM colt DOWNSTREAM CG15399 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8292582	2L_8292582_SNP [dm3] 2L_8292582_SNP [dm6]	A	T	5.436e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_cnc
3R	22771823	3R_22771823_SNP [dm3] 3R_26946101_SNP [dm6]	A	C	5.444e^-4	1	NON_SYNONYMOUS_CODING CG14252 DOWNSTREAM sda	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	19272166	X_19272166_SNP [dm3] X_19378133_SNP [dm6]	T	A	5.446e^-4	1	INTRON kek5
3L	8544865	3L_8544865_SNP [dm3] 3L_8551765_SNP [dm6]	T	G	5.454e^-4	1	INTRON rhea
X	12118951	X_12118951_SNP [dm3] X_12224918_SNP [dm6]	A	G	5.456e^-4	1	INTRON Ten-a
3R	8125295	3R_8125295_SNP [dm3] 3R_12299573_SNP [dm6]	G	T	5.461e^-4	1	INTRON svp	TF binding site mE1_TFBS_cad
2R	8651493	2R_8651493_SNP [dm3] 2R_12763988_SNP [dm6]	G	T	5.461e^-4	1	DOWNSTREAM CG12374 INTERGENIC
3L	4630684	3L_4630684_DEL [dm3] 3L_4630684_DEL [dm6]	AA	A	5.468e^-4	1	INTRON axo
2L	12376762	2L_12376762_SNP [dm3] 2L_12376762_SNP [dm6]	G	A	5.472e^-4	1	INTRON bru-2
X	5411626	X_5411626_SNP [dm3] X_5517593_SNP [dm6]	T	C	5.477e^-4	1	SYNONYMOUS_CODING CG12730 UPSTREAM CR45518	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	15547723	2L_15547723_SNP [dm3] 2L_15547723_SNP [dm6]	T	C	5.492e^-4	1	NON_SYNONYMOUS_CODING Skadu
3R	10759602	3R_10759602_SNP [dm3] 3R_14933880_SNP [dm6]	G	A	5.500e^-4	1	INTERGENIC
2L	4207589	2L_4207589_SNP [dm3] 2L_4207589_SNP [dm6]	G	A	5.509e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4245621	2R_4245621_SNP [dm3] 2R_8358116_SNP [dm6]	T	G	5.526e^-4	1	UPSTREAM CG11635 INTRON pdm3	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	20859266	X_20859266_SNP [dm3] X_20988239_SNP [dm6]	A	T	5.530e^-4	1	INTERGENIC
2L	9058070	2L_9058070_SNP [dm3] 2L_9058070_SNP [dm6]	C	T	5.532e^-4	1	INTRON CG31708
3R	13456188	3R_13456188_SNP [dm3] 3R_17630466_SNP [dm6]	A	G	5.534e^-4	1	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
2R	2038663	2R_2038663_SNP [dm3] 2R_6151158_SNP [dm6]	G	A	5.536e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	18464510	3R_18464510_SNP [dm3] 3R_22638788_SNP [dm6]	C	T	5.542e^-4	1	NON_SYNONYMOUS_CODING loco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	16250542	3L_16250542_SNP [dm3] 3L_16257442_SNP [dm6]	A	C	5.552e^-4	1	UPSTREAM CG13054 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	13908274	3R_13908274_SNP [dm3] 3R_18082552_SNP [dm6]	A	T	5.557e^-4	1	UTR_3_PRIME CG14317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna
3R	15241503	3R_15241503_SNP [dm3] 3R_19415781_SNP [dm6]	T	C	5.563e^-4	1	UTR_5_PRIME CG31221
3R	13122922	3R_13122922_SNP [dm3] 3R_17297200_SNP [dm6]	G	C	5.567e^-4	1	INTERGENIC
2L	1824294	2L_1824294_INS [dm3] 2L_1824294_INS [dm6]	T	TCT	5.568e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
2L	1824296	2L_1824296_SNP [dm3] 2L_1824296_SNP [dm6]	A	T	5.568e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
2L	1824298	2L_1824298_SNP [dm3] 2L_1824298_SNP [dm6]	C	T	5.568e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
2L	1824299	2L_1824299_SNP [dm3] 2L_1824299_SNP [dm6]	A	T	5.568e^-4	1	UTR_3_PRIME CG31664 UPSTREAM CG31933
3L	6055859	3L_6055859_SNP [dm3] 3L_6062759_SNP [dm6]	A	T	5.571e^-4	1	SYNONYMOUS_CODING CG10472	TF binding site mE1_TFBS_cad
2L	7788120	2L_7788120_SNP [dm3] 2L_7788120_SNP [dm6]	T	A	5.572e^-4	1	INTRON CG7149
3L	14207696	3L_14207696_DEL [dm3] 3L_14214596_DEL [dm6]	TT	T	5.577e^-4	1	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1037471	2R_1037471_SNP [dm3] 2R_5149966_SNP [dm6]	C	A	5.589e^-4	1	INTRON Atf6

By genomic position
Variant impact
Gene name

Resp_Butanedion_90pc phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results