DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.135e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09176
In_2L_t	0.03665
In_3R_K	0.09978

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	11.0261	0.004

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2393 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25284984	3R_25284984_SNP [dm3] 3R_29459262_SNP [dm6]	A	C	5.450e^-7	0.577	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	12653206	X_12653206_SNP [dm3] X_12759173_SNP [dm6]	G	A	8.933e^-7	0.577	INTRON ade5
2L	20546048	2L_20546048_SNP [dm3] 2L_20546048_SNP [dm6]	C	T	1.173e^-6	0.577	INTERGENIC
3L	9150825	3L_9150825_SNP [dm3] 3L_9157725_SNP [dm6]	G	T	1.920e^-6	0.577	INTRON Rdl
3L	3458248	3L_3458248_SNP [dm3] 3L_3458248_SNP [dm6]	C	T	2.028e^-6	0.577	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21511027	X_21511027_INS [dm3] X_21640000_INS [dm6]	G	GAGT	2.067e^-6	0.577	INTERGENIC
3R	2013104	3R_2013104_SNP [dm3] 3R_6187382_SNP [dm6]	A	G	2.362e^-6	0.577	UTR_5_PRIME NPFR
2R	16920950	2R_16920950_SNP [dm3] 2R_21033445_SNP [dm6]	G	T	2.464e^-6	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17803609	2L_17803609_SNP [dm3] 2L_17803609_SNP [dm6]	C	T	3.602e^-6	0.611	INTRON CadN2
X	16718347	X_16718347_SNP [dm3] X_16824314_SNP [dm6]	A	G	4.717e^-6	0.611	INTRON CG4829
X	14523087	X_14523087_SNP [dm3] X_14629054_SNP [dm6]	G	A	4.972e^-6	0.611	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3314199	3L_3314199_SNP [dm3] 3L_3314199_SNP [dm6]	G	A	5.288e^-6	0.611	UPSTREAM Drsl2 & 1 other DOWNSTREAM ZnT63C INTERGENIC
3R	19797618	3R_19797618_SNP [dm3] 3R_23971896_SNP [dm6]	C	G	5.481e^-6	0.611	INTRON CG31140
3R	12971920	3R_12971920_SNP [dm3] 3R_17146198_SNP [dm6]	G	A	5.524e^-6	0.611	SYNONYMOUS_CODING m-cup	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5359158	2R_5359158_SNP [dm3] 2R_9471653_SNP [dm6]	T	A	5.619e^-6	0.611	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15173679	2L_15173679_SNP [dm3] 2L_15173679_SNP [dm6]	A	C	5.890e^-6	0.611	INTRON CG4168
2L	18735003	2L_18735003_SNP [dm3] 2L_18735003_SNP [dm6]	A	T	6.565e^-6	0.611	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	20844492	2L_20844492_SNP [dm3] 2L_20844492_SNP [dm6]	A	T	6.582e^-6	0.611	INTRON CG31676
2L	15793540	2L_15793540_SNP [dm3] 2L_15793540_SNP [dm6]	C	T	6.595e^-6	0.611	INTERGENIC
3R	2066935	3R_2066935_SNP [dm3] 3R_6241213_SNP [dm6]	T	C	6.786e^-6	0.611	INTERGENIC
2R	7119351	2R_7119351_SNP [dm3] 2R_11231846_SNP [dm6]	C	T	7.048e^-6	0.611	INTRON metro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	20845368	2L_20845368_SNP [dm3] 2L_20845368_SNP [dm6]	C	T	7.664e^-6	0.611	SYNONYMOUS_CODING CG31676
2R	2413924	2R_2413924_SNP [dm3] 2R_6526419_SNP [dm6]	T	G	7.750e^-6	0.611	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad transposable element FlyBase
3R	13169517	3R_13169517_SNP [dm3] 3R_17343795_SNP [dm6]	C	T	8.351e^-6	0.611	INTRON beat-IIa
2L	4309067	2L_4309067_SNP [dm3] 2L_4309067_SNP [dm6]	A	C	8.427e^-6	0.611	INTRON tutl
2L	17803557	2L_17803557_SNP [dm3] 2L_17803557_SNP [dm6]	A	C	8.572e^-6	0.611	INTRON CadN2
2L	11351515	2L_11351515_SNP [dm3] 2L_11351515_SNP [dm6]	A	T	8.794e^-6	0.611	INTERGENIC	regulatory region REDfly_CRMs
2R	4405904	2R_4405904_SNP [dm3] 2R_8518399_SNP [dm6]	T	A	9.757e^-6	0.634	INTRON mtt
2R	16072489	2R_16072489_SNP [dm3] 2R_20184984_SNP [dm6]	G	T	9.802e^-6	0.634	INTERGENIC
2R	6746198	2R_6746198_SNP [dm3] 2R_10858693_SNP [dm6]	C	T	1.100e^-5	0.688	INTRON CG30015
2L	15793536	2L_15793536_SNP [dm3] 2L_15793536_SNP [dm6]	C	T	1.172e^-5	0.688	INTERGENIC
2L	17609019	2L_17609019_SNP [dm3] 2L_17609019_SNP [dm6]	A	C	1.174e^-5	0.688	INTERGENIC
2R	17637382	2R_17637382_DEL [dm3] 2R_21749877_DEL [dm6]	CTAGA	C	1.267e^-5	0.698	INTERGENIC
2L	2276236	2L_2276236_SNP [dm3] 2L_2276236_SNP [dm6]	C	T	1.292e^-5	0.698	INTRON CR43753 EXON CR43753
2L	20549502	2L_20549502_SNP [dm3] 2L_20549502_SNP [dm6]	T	G	1.302e^-5	0.698	INTERGENIC
2R	2667810	2R_2667810_SNP [dm3] 2R_6780305_SNP [dm6]	G	C	1.391e^-5	0.706	INTRON Epac & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16119437	2L_16119437_INS [dm3] 2L_16119437_INS [dm6]	T	TT	1.459e^-5	0.706	INTERGENIC
2L	9147028	2L_9147028_SNP [dm3] 2L_9147028_SNP [dm6]	G	A	1.509e^-5	0.706	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13498589	X_13498589_INS [dm3] X_13604556_INS [dm6]	A	ACATA	1.512e^-5	0.706	EXON CR44654	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7448531	2L_7448531_DEL [dm3] 2L_7448531_DEL [dm6]	GG	G	1.535e^-5	0.706	UTR_5_PRIME santa-maria INTRON santa-maria
2R	17637480	2R_17637480_SNP [dm3] 2R_21749975_SNP [dm6]	T	C	1.629e^-5	0.706	INTERGENIC
2R	5359176	2R_5359176_SNP [dm3] 2R_9471671_SNP [dm6]	T	C	1.652e^-5	0.706	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15159669	2R_15159669_SNP [dm3] 2R_19272164_SNP [dm6]	G	T	1.736e^-5	0.706	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr
2R	13645311	2R_13645311_SNP [dm3] 2R_17757806_SNP [dm6]	A	T	1.763e^-5	0.706	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4117215	2R_4117215_SNP [dm3] 2R_8229710_SNP [dm6]	T	A	1.777e^-5	0.706	NON_SYNONYMOUS_CODING dpn UPSTREAM CG34217 EXON CR44275	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13169494	3R_13169494_SNP [dm3] 3R_17343772_SNP [dm6]	T	A	1.798e^-5	0.706	INTRON beat-IIa
X	12653177	X_12653177_SNP [dm3] X_12759144_SNP [dm6]	C	T	1.829e^-5	0.706	INTRON ade5
2R	13112692	2R_13112692_SNP [dm3] 2R_17225187_SNP [dm6]	A	T	1.840e^-5	0.706	INTRON mbl
3R	19163770	3R_19163770_SNP [dm3] 3R_23338048_SNP [dm6]	T	A	1.892e^-5	0.706	INTRON pnt	TF binding site mE1_TFBS_inv
2R	5359171	2R_5359171_INS [dm3] 2R_9471666_INS [dm6]	G	GTTAAATCATAACCTTATGA...	1.914e^-5	0.706	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10238987	3R_10238987_SNP [dm3] 3R_14413265_SNP [dm6]	C	A	1.919e^-5	0.706	INTRON cv-c	TF binding site BDTNP1_TFBS_prd
3R	8413961	3R_8413961_SNP [dm3] 3R_12588239_SNP [dm6]	C	T	1.988e^-5	0.717	INTRON Octbeta2R	TF binding site mE1_TFBS_inv
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	2.079e^-5	0.736	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	2737997	3L_2737997_SNP [dm3] 3L_2737997_SNP [dm6]	A	G	2.141e^-5	0.743	INTRON Mrtf
X	20860451	X_20860451_SNP [dm3] X_20989424_SNP [dm6]	A	T	2.193e^-5	0.747	INTERGENIC
2R	9329257	2R_9329257_SNP [dm3] 2R_13441752_SNP [dm6]	A	C	2.270e^-5	0.747	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	17430870	2L_17430870_SNP [dm3] 2L_17430870_SNP [dm6]	T	G	2.306e^-5	0.747	DOWNSTREAM CR44409 INTRON Dif
2L	3847988	2L_3847988_SNP [dm3] 2L_3847988_SNP [dm6]	A	T	2.389e^-5	0.747	INTERGENIC
2L	20700085	2L_20700085_SNP [dm3] 2L_20700085_SNP [dm6]	T	C	2.402e^-5	0.747	INTRON Hr38
2L	15175873	2L_15175873_SNP [dm3] 2L_15175873_SNP [dm6]	G	T	2.420e^-5	0.747	INTRON CG4168
2L	17803573	2L_17803573_SNP [dm3] 2L_17803573_SNP [dm6]	T	C	2.429e^-5	0.747	INTRON CadN2
3R	19797655	3R_19797655_SNP [dm3] 3R_23971933_SNP [dm6]	A	C	2.492e^-5	0.75	INTRON CG31140
3R	18934163	3R_18934163_SNP [dm3] 3R_23108441_SNP [dm6]	T	C	2.520e^-5	0.75	INTRON CG13830
3R	8418848	3R_8418848_SNP [dm3] 3R_12593126_SNP [dm6]	T	C	2.690e^-5	0.763	INTRON Octbeta2R
2L	7466508	2L_7466508_SNP [dm3] 2L_7466508_SNP [dm6]	T	C	2.754e^-5	0.763	UPSTREAM CG6055 INTERGENIC
2L	17781163	2L_17781163_SNP [dm3] 2L_17781163_SNP [dm6]	C	A	2.790e^-5	0.763	INTERGENIC
3L	19273751	3L_19273751_SNP [dm3] 3L_19280651_SNP [dm6]	T	G	2.795e^-5	0.763	SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2L	20846039	2L_20846039_SNP [dm3] 2L_20846039_SNP [dm6]	G	T	2.830e^-5	0.763	INTRON CG31676
X	12653176	X_12653176_SNP [dm3] X_12759143_SNP [dm6]	T	G	2.834e^-5	0.763	INTRON ade5
2L	18781217	2L_18781217_SNP [dm3] 2L_18781217_SNP [dm6]	G	A	2.890e^-5	0.763	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	17204495	3R_17204495_SNP [dm3] 3R_21378773_SNP [dm6]	T	A	2.921e^-5	0.763	UPSTREAM tin INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25048313	3R_25048313_SNP [dm3] 3R_29222591_SNP [dm6]	A	G	3.045e^-5	0.763	SYNONYMOUS_CODING CG1458 UPSTREAM Brd8 DOWNSTREAM Ef1gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	18157967	3R_18157967_SNP [dm3] 3R_22332245_SNP [dm6]	T	C	3.057e^-5	0.763	SYNONYMOUS_CODING CG13862 DOWNSTREAM CG33721 & 1 other
2R	6331038	2R_6331038_SNP [dm3] 2R_10443533_SNP [dm6]	G	A	3.110e^-5	0.763	UPSTREAM Galphao INTRON Galphao
2L	16125685	2L_16125685_SNP [dm3] 2L_16125685_SNP [dm6]	A	G	3.241e^-5	0.763	INTERGENIC
3R	13233421	3R_13233421_SNP [dm3] 3R_17407699_SNP [dm6]	T	A	3.415e^-5	0.763	UPSTREAM CG17283 DOWNSTREAM CG42798 INTERGENIC
2R	7118993	2R_7118993_SNP [dm3] 2R_11231488_SNP [dm6]	G	A	3.418e^-5	0.763	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7118994	2R_7118994_SNP [dm3] 2R_11231489_SNP [dm6]	T	C	3.418e^-5	0.763	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7592315	2L_7592315_SNP [dm3] 2L_7592315_SNP [dm6]	C	T	3.495e^-5	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7118767	2R_7118767_SNP [dm3] 2R_11231262_SNP [dm6]	T	G	3.495e^-5	0.763	INTRON metro	TF binding site mE1_TFBS_Trl
2R	7118935	2R_7118935_SNP [dm3] 2R_11231430_SNP [dm6]	A	G	3.539e^-5	0.763	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21527211	X_21527211_SNP [dm3] X_21656184_SNP [dm6]	C	A	3.550e^-5	0.763	INTERGENIC
3L	1605995	3L_1605995_SNP [dm3] 3L_1605995_SNP [dm6]	C	A	3.559e^-5	0.763	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad
2L	11311621	2L_11311621_SNP [dm3] 2L_11311621_SNP [dm6]	C	A	3.567e^-5	0.763	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16772330	2R_16772330_SNP [dm3] 2R_20884825_SNP [dm6]	C	G	3.578e^-5	0.763	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7118996	2R_7118996_SNP [dm3] 2R_11231491_SNP [dm6]	T	A	3.613e^-5	0.763	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7119001	2R_7119001_SNP [dm3] 2R_11231496_SNP [dm6]	A	C	3.613e^-5	0.763	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6746175	2R_6746175_SNP [dm3] 2R_10858670_SNP [dm6]	C	T	3.631e^-5	0.763	INTRON CG30015	insulator Insulator_Class_I.mE01
3R	15251230	3R_15251230_SNP [dm3] 3R_19425508_SNP [dm6]	T	C	3.653e^-5	0.763	UPSTREAM CG3517 INTRON CG31221
2R	17789814	2R_17789814_SNP [dm3] 2R_21902309_SNP [dm6]	A	C	3.748e^-5	0.763	INTRON Fili
2L	3847981	2L_3847981_SNP [dm3] 2L_3847981_SNP [dm6]	A	G	3.795e^-5	0.763	INTERGENIC
2L	17782883	2L_17782883_SNP [dm3] 2L_17782883_SNP [dm6]	C	T	3.864e^-5	0.763	INTERGENIC
3L	10315280	3L_10315280_SNP [dm3] 3L_10322180_SNP [dm6]	T	C	3.890e^-5	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12167574	2L_12167574_SNP [dm3] 2L_12167574_SNP [dm6]	G	C	3.909e^-5	0.763	DOWNSTREAM ZnT33D INTRON CG31760
3L	9538042	3L_9538042_SNP [dm3] 3L_9544942_SNP [dm6]	T	C	3.948e^-5	0.763	UPSTREAM Ir67a INTERGENIC
3R	13169492	3R_13169492_SNP [dm3] 3R_17343770_SNP [dm6]	G	A	3.953e^-5	0.763	INTRON beat-IIa
2L	17782890	2L_17782890_INS [dm3] 2L_17782890_INS [dm6]	C	CG	3.995e^-5	0.763	INTERGENIC
X	6332697	X_6332697_SNP [dm3] X_6438664_SNP [dm6]	A	G	4.052e^-5	0.763	INTRON CG42340
2R	2690841	2R_2690841_SNP [dm3] 2R_6803336_SNP [dm6]	C	A	4.099e^-5	0.763	INTERGENIC
2R	2671916	2R_2671916_SNP [dm3] 2R_6784411_SNP [dm6]	C	T	4.143e^-5	0.763	INTRON Epac	TF binding site mE1_TFBS_chinmo
2L	7525168	2L_7525168_SNP [dm3] 2L_7525168_SNP [dm6]	T	C	4.161e^-5	0.763	INTRON RapGAP1
2R	8528773	2R_8528773_SNP [dm3] 2R_12641268_SNP [dm6]	C	T	4.166e^-5	0.763	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7796329	2L_7796329_SNP [dm3] 2L_7796329_SNP [dm6]	T	A	4.211e^-5	0.763	UTR_3_PRIME Herp UPSTREAM LKR DOWNSTREAM Herp & 1 other
3R	19797639	3R_19797639_DEL [dm3] 3R_23971917_DEL [dm6]	CCCGCC	C	4.233e^-5	0.763	INTRON CG31140
2R	4629412	2R_4629412_DEL [dm3] 2R_8741907_DEL [dm6]	AAGAAGA	A	4.336e^-5	0.768	INTRON CG8740
3L	8460561	3L_8460561_SNP [dm3] 3L_8467461_SNP [dm6]	G	A	4.345e^-5	0.768	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9329242	2R_9329242_SNP [dm3] 2R_13441737_SNP [dm6]	T	C	4.382e^-5	0.768	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	17803597	2L_17803597_SNP [dm3] 2L_17803597_SNP [dm6]	T	A	4.499e^-5	0.771	INTRON CadN2
3R	17358323	3R_17358323_SNP [dm3] 3R_21532601_SNP [dm6]	T	G	4.670e^-5	0.771	EXON CR43372
2R	4619589	2R_4619589_SNP [dm3] 2R_8732084_SNP [dm6]	A	G	4.775e^-5	0.771	INTRON stmA
2R	4626651	2R_4626651_SNP [dm3] 2R_8739146_SNP [dm6]	T	C	4.775e^-5	0.771	INTRON CG8740	TF binding site mE1_TFBS_cad
3L	12704641	3L_12704641_SNP [dm3] 3L_12711541_SNP [dm6]	A	G	4.839e^-5	0.771	INTERGENIC
X	16718659	X_16718659_SNP [dm3] X_16824626_SNP [dm6]	T	C	4.882e^-5	0.771	SYNONYMOUS_CODING CG4829	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11256257	3L_11256257_SNP [dm3] 3L_11263157_SNP [dm6]	C	T	5.092e^-5	0.771	INTERGENIC
2L	20550285	2L_20550285_SNP [dm3] 2L_20550285_SNP [dm6]	G	A	5.097e^-5	0.771	INTERGENIC
2R	4641313	2R_4641313_SNP [dm3] 2R_8753808_SNP [dm6]	G	T	5.109e^-5	0.771	SYNONYMOUS_CODING CG8740	TF binding site mE1_TFBS_chinmo
2L	9047049	2L_9047049_SNP [dm3] 2L_9047049_SNP [dm6]	C	T	5.118e^-5	0.771	INTERGENIC
2L	1478609	2L_1478609_SNP [dm3] 2L_1478609_SNP [dm6]	T	G	5.134e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5305007	2R_5305007_SNP [dm3] 2R_9417502_SNP [dm6]	C	T	5.181e^-5	0.771	SYNONYMOUS_CODING wun2
3R	1977806	3R_1977806_SNP [dm3] 3R_6152084_SNP [dm6]	G	T	5.247e^-5	0.771	INTRON CG31559
2L	9047043	2L_9047043_SNP [dm3] 2L_9047043_SNP [dm6]	G	A	5.327e^-5	0.771	INTERGENIC
2R	13645309	2R_13645309_SNP [dm3] 2R_17757804_SNP [dm6]	A	T	5.353e^-5	0.771	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5359126	2R_5359126_SNP [dm3] 2R_9471621_SNP [dm6]	G	A	5.401e^-5	0.771	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5220257	3L_5220257_SNP [dm3] 3L_5227157_SNP [dm6]	C	G	5.417e^-5	0.771	INTRON shep
2R	12598488	2R_12598488_INS [dm3] 2R_16710983_INS [dm6]	A	AA	5.458e^-5	0.771	INTRON CG30463
2L	7513430	2L_7513430_SNP [dm3] 2L_7513430_SNP [dm6]	A	G	5.480e^-5	0.771	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22729863	3R_22729863_SNP [dm3] 3R_26904141_SNP [dm6]	A	C	5.484e^-5	0.771	INTRON T48	regulatory region REDfly_CRMs
2L	20354799	2L_20354799_SNP [dm3] 2L_20354799_SNP [dm6]	G	A	5.594e^-5	0.771	INTRON RtGEF
2R	16072365	2R_16072365_SNP [dm3] 2R_20184860_SNP [dm6]	T	A	5.651e^-5	0.771	INTERGENIC
3R	2067004	3R_2067004_SNP [dm3] 3R_6241282_SNP [dm6]	T	C	5.678e^-5	0.771	INTERGENIC
2R	5359128	2R_5359128_DEL [dm3] 2R_9471623_DEL [dm6]	GCAAAAACA	TTTCTTT	5.687e^-5	0.771	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27121028	3R_27121028_SNP [dm3] 3R_31295306_SNP [dm6]	A	C	5.760e^-5	0.771	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26184209	3R_26184209_SNP [dm3] 3R_30358487_SNP [dm6]	G	A	5.827e^-5	0.771	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13260761	X_13260761_SNP [dm3] X_13366728_SNP [dm6]	G	T	5.935e^-5	0.771	UTR_3_PRIME Syt12
2R	2673001	2R_2673001_SNP [dm3] 2R_6785496_SNP [dm6]	C	T	5.953e^-5	0.771	INTRON Epac
X	21526602	X_21526602_SNP [dm3] X_21655575_SNP [dm6]	T	G	5.981e^-5	0.771	INTERGENIC	transposable element FlyBase
2L	8068428	2L_8068428_SNP [dm3] 2L_8068428_SNP [dm6]	A	G	6.082e^-5	0.771	SYNONYMOUS_CODING poe
2L	18750592	2L_18750592_SNP [dm3] 2L_18750592_SNP [dm6]	T	A	6.123e^-5	0.771	INTERGENIC
3R	5723909	3R_5723909_SNP [dm3] 3R_9898187_SNP [dm6]	A	T	6.148e^-5	0.771	INTRON Glut4EF
2L	2601432	2L_2601432_SNP [dm3] 2L_2601432_SNP [dm6]	T	C	6.154e^-5	0.771	EXON CR44789
3R	15722455	3R_15722455_SNP [dm3] 3R_19896733_SNP [dm6]	T	G	6.189e^-5	0.771	DOWNSTREAM CG4538 INTRON CG4733
X	21527185	X_21527185_SNP [dm3] X_21656158_SNP [dm6]	T	G	6.216e^-5	0.771	INTERGENIC
2R	7789641	2R_7789641_SNP [dm3] 2R_11902136_SNP [dm6]	G	A	6.293e^-5	0.771	DOWNSTREAM Zip48C INTRON MCPH1
2L	6641138	2L_6641138_SNP [dm3] 2L_6641138_SNP [dm6]	C	G	6.342e^-5	0.771	INTRON CG31635
2L	9755922	2L_9755922_SNP [dm3] 2L_9755922_SNP [dm6]	G	A	6.361e^-5	0.771	INTERGENIC
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	6.378e^-5	0.771	INTRON Mob2
2R	6331030	2R_6331030_SNP [dm3] 2R_10443525_SNP [dm6]	C	G	6.405e^-5	0.771	UPSTREAM Galphao INTRON Galphao
2R	16723538	2R_16723538_INS [dm3] 2R_20836033_INS [dm6]	T	TGGCT	6.442e^-5	0.771	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13458313	3R_13458313_SNP [dm3] 3R_17632591_SNP [dm6]	C	T	6.460e^-5	0.771	DOWNSTREAM tRNA:CR31573 INTRON CG43175
3R	13458322	3R_13458322_SNP [dm3] 3R_17632600_SNP [dm6]	A	C	6.460e^-5	0.771	DOWNSTREAM tRNA:CR31573 INTRON CG43175
3L	3399362	3L_3399362_SNP [dm3] 3L_3399362_SNP [dm6]	A	C	6.487e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4618295	2R_4618295_SNP [dm3] 2R_8730790_SNP [dm6]	G	C	6.506e^-5	0.771	SYNONYMOUS_CODING stmA
2R	4623039	2R_4623039_SNP [dm3] 2R_8735534_SNP [dm6]	C	A	6.506e^-5	0.771	UPSTREAM CG8740 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	21526594	X_21526594_SNP [dm3] X_21655567_SNP [dm6]	G	C	6.516e^-5	0.771	INTERGENIC	transposable element FlyBase
2L	16070000	2L_16070000_SNP [dm3] 2L_16070000_SNP [dm6]	A	G	6.531e^-5	0.771	INTRON beat-Ia
X	16330760	X_16330760_SNP [dm3] X_16436727_SNP [dm6]	A	T	6.555e^-5	0.771	NON_SYNONYMOUS_CODING hang DOWNSTREAM CG9947	TF binding site mE1_TFBS_cad
X	14523365	X_14523365_SNP [dm3] X_14629332_SNP [dm6]	C	T	6.600e^-5	0.771	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19867232	2L_19867232_SNP [dm3] 2L_19867232_SNP [dm6]	A	T	6.626e^-5	0.771	INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	16718174	X_16718174_SNP [dm3] X_16824141_SNP [dm6]	G	A	6.674e^-5	0.771	INTRON CG4829
3L	12028021	3L_12028021_SNP [dm3] 3L_12034921_SNP [dm6]	A	C	6.875e^-5	0.771	INTRON rols	TF binding site BDTNP1_TFBS_twi
3L	8726556	3L_8726556_INS [dm3] 3L_8733456_INS [dm6]	A	TG	7.099e^-5	0.771	UTR_3_PRIME Prm DOWNSTREAM Cp16	TF binding site mE1_TFBS_chinmo
2R	16072454	2R_16072454_SNP [dm3] 2R_20184949_SNP [dm6]	A	C	7.116e^-5	0.771	INTERGENIC
3R	12972294	3R_12972294_SNP [dm3] 3R_17146572_SNP [dm6]	G	A	7.136e^-5	0.771	SYNONYMOUS_CODING m-cup	TF binding site mE1_TFBS_cad
3R	2056989	3R_2056989_SNP [dm3] 3R_6231267_SNP [dm6]	T	C	7.281e^-5	0.771	INTERGENIC
2L	3848015	2L_3848015_SNP [dm3] 2L_3848015_SNP [dm6]	A	G	7.511e^-5	0.771	INTERGENIC
3R	7821483	3R_7821483_SNP [dm3] 3R_11995761_SNP [dm6]	C	T	7.542e^-5	0.771	NON_SYNONYMOUS_CODING Tk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11181116	2L_11181116_SNP [dm3] 2L_11181116_SNP [dm6]	C	T	7.550e^-5	0.771	DOWNSTREAM CG4788 INTRON Ca-beta	TF binding site mE1_TFBS_cad
3L	12139796	3L_12139796_SNP [dm3] 3L_12146696_SNP [dm6]	A	T	7.561e^-5	0.771	UTR_5_PRIME Nrx-IV UPSTREAM CG5642	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	12668963	X_12668963_SNP [dm3] X_12774930_SNP [dm6]	C	T	7.599e^-5	0.771	UTR_3_PRIME CG32647 DOWNSTREAM CG32647
2R	19383640	2R_19383640_SNP [dm3] 2R_23496117_SNP [dm6]	T	C	7.631e^-5	0.771	INTERGENIC
X	17255502	X_17255502_SNP [dm3] X_17361469_SNP [dm6]	G	T	7.656e^-5	0.771	INTERGENIC
2L	20501123	2L_20501123_SNP [dm3] 2L_20501123_SNP [dm6]	C	T	7.768e^-5	0.771	INTERGENIC
3L	12504010	3L_12504010_SNP [dm3] 3L_12510910_SNP [dm6]	G	A	7.835e^-5	0.771	SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
3R	1978463	3R_1978463_SNP [dm3] 3R_6152741_SNP [dm6]	T	G	7.836e^-5	0.771	INTRON CG31559
2L	3154992	2L_3154992_SNP [dm3] 2L_3154992_SNP [dm6]	A	G	8.168e^-5	0.771	INTRON Mad
2R	18483644	2R_18483644_SNP [dm3] 2R_22596139_SNP [dm6]	A	T	8.201e^-5	0.771	DOWNSTREAM CR45328 INTRON CG3927
3R	13233462	3R_13233462_SNP [dm3] 3R_17407740_SNP [dm6]	G	A	8.355e^-5	0.771	UPSTREAM CG17283 DOWNSTREAM CG42798 INTERGENIC
2R	19554426	2R_19554426_SNP [dm3] 2R_23666903_SNP [dm6]	T	C	8.445e^-5	0.771	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	578200	2L_578200_SNP [dm3] 2L_578200_SNP [dm6]	C	T	8.458e^-5	0.771	SYNONYMOUS_CODING Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10740195	3L_10740195_SNP [dm3] 3L_10747095_SNP [dm6]	T	C	8.469e^-5	0.771	INTERGENIC
3R	7821484	3R_7821484_SNP [dm3] 3R_11995762_SNP [dm6]	C	A	8.486e^-5	0.771	NON_SYNONYMOUS_CODING Tk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26160565	3R_26160565_INS [dm3] 3R_30334843_INS [dm6]	G	GCCCTTTG	8.501e^-5	0.771	INTRON hdc
2R	4377553	2R_4377553_SNP [dm3] 2R_8490048_SNP [dm6]	G	A	8.503e^-5	0.771	INTRON mtt
3R	15722478	3R_15722478_SNP [dm3] 3R_19896756_SNP [dm6]	T	C	8.503e^-5	0.771	DOWNSTREAM CG4538 INTRON CG4733
3R	15058193	3R_15058193_SNP [dm3] 3R_19232471_SNP [dm6]	G	A	8.508e^-5	0.771	SYNONYMOUS_CODING unc79
3R	1978538	3R_1978538_SNP [dm3] 3R_6152816_SNP [dm6]	G	A	8.546e^-5	0.771	INTRON CG31559
2R	4192787	2R_4192787_SNP [dm3] 2R_8305282_SNP [dm6]	A	T	8.650e^-5	0.771	DOWNSTREAM CR44447 INTERGENIC
2L	9088879	2L_9088879_SNP [dm3] 2L_9088879_SNP [dm6]	A	G	8.745e^-5	0.771	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17544014	3R_17544014_SNP [dm3] 3R_21718292_SNP [dm6]	T	C	8.749e^-5	0.771	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	16085951	2L_16085951_SNP [dm3] 2L_16085951_SNP [dm6]	A	C	8.758e^-5	0.771	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5475976	3R_5475976_SNP [dm3] 3R_9650254_SNP [dm6]	A	T	8.811e^-5	0.771	UTR_3_PRIME Dh44 DOWNSTREAM Dh44 & 1 other
3L	3396758	3L_3396758_SNP [dm3] 3L_3396758_SNP [dm6]	A	G	8.836e^-5	0.771	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	7624883	2R_7624883_SNP [dm3] 2R_11737378_SNP [dm6]	T	G	8.838e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26199812	3R_26199812_SNP [dm3] 3R_30374090_SNP [dm6]	C	G	8.909e^-5	0.771	INTERGENIC
2L	18763917	2L_18763917_SNP [dm3] 2L_18763917_SNP [dm6]	G	A	8.984e^-5	0.771	SYNONYMOUS_CODING ham	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4087556	2L_4087556_DEL [dm3] 2L_4087556_DEL [dm6]	AA	A	9.081e^-5	0.771	INTRON ed
2R	8854542	2R_8854542_SNP [dm3] 2R_12967037_SNP [dm6]	C	A	9.091e^-5	0.771	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15058130	3R_15058130_SNP [dm3] 3R_19232408_SNP [dm6]	C	T	9.125e^-5	0.771	SYNONYMOUS_CODING unc79
3R	15058139	3R_15058139_SNP [dm3] 3R_19232417_SNP [dm6]	G	C	9.125e^-5	0.771	SYNONYMOUS_CODING unc79
2L	17433873	2L_17433873_SNP [dm3] 2L_17433873_SNP [dm6]	A	T	9.197e^-5	0.771	UTR_5_PRIME CG5043 UPSTREAM Dif
3L	18554274	3L_18554274_SNP [dm3] 3L_18561174_SNP [dm6]	C	T	9.217e^-5	0.771	INTRON AstC-R1
2R	9353888	2R_9353888_SNP [dm3] 2R_13466383_SNP [dm6]	A	G	9.394e^-5	0.771	INTRON arr
X	4595461	X_4595461_SNP [dm3] X_4701428_SNP [dm6]	C	T	9.592e^-5	0.771	UTR_3_PRIME ctp UPSTREAM l_1_G0334	TF binding site BDTNP1_TFBS_dl
X	12634364	X_12634364_SNP [dm3] X_12740331_SNP [dm6]	T	C	9.605e^-5	0.771	INTRON Smr
2L	16073726	2L_16073726_INS [dm3] 2L_16073726_INS [dm6]	G	AAAGAGA	9.698e^-5	0.771	UPSTREAM CR44870 INTRON beat-Ia
3L	7800766	3L_7800766_SNP [dm3] 3L_7807666_SNP [dm6]	A	G	9.738e^-5	0.771	INTRON CG32369	TF binding site mE1_TFBS_Trl
2R	4192804	2R_4192804_DEL [dm3] 2R_8305299_DEL [dm6]	TCA	T	9.760e^-5	0.771	DOWNSTREAM CR44447 INTERGENIC
3L	10289928	3L_10289928_SNP [dm3] 3L_10296828_SNP [dm6]	A	T	9.789e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22361450	3R_22361450_SNP [dm3] 3R_26535728_SNP [dm6]	A	T	9.819e^-5	0.771	UPSTREAM plum & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	893304	2L_893304_SNP [dm3] 2L_893304_SNP [dm6]	A	G	9.894e^-5	0.771	INTERGENIC
3L	5274323	3L_5274323_SNP [dm3] 3L_5281223_SNP [dm6]	T	C	9.894e^-5	0.771	INTERGENIC
3R	13169525	3R_13169525_SNP [dm3] 3R_17343803_SNP [dm6]	T	G	9.911e^-5	0.771	INTRON beat-IIa
2R	11526219	2R_11526219_SNP [dm3] 2R_15638714_SNP [dm6]	A	G	9.944e^-5	0.771	INTRON CG42524
3L	1145377	3L_1145377_SNP [dm3] 3L_1145377_SNP [dm6]	C	T	9.947e^-5	0.771	INTRON bab2
3R	3760240	3R_3760240_SNP [dm3] 3R_7934518_SNP [dm6]	T	C	9.950e^-5	0.771	UTR_3_PRIME dsx INTRON dsx	TF binding site mE1_TFBS_cad
2R	8533755	2R_8533755_SNP [dm3] 2R_12646250_SNP [dm6]	A	T	9.972e^-5	0.771	INTRON CG8785	TF binding site mE1_TFBS_cad
2R	6591874	2R_6591874_SNP [dm3] 2R_10704369_SNP [dm6]	G	A	1.001e^-4	0.771	INTRON stan
2R	6746408	2R_6746408_SNP [dm3] 2R_10858903_SNP [dm6]	A	C	1.006e^-4	0.771	UPSTREAM CR44302 INTRON CG30015
3R	21050766	3R_21050766_SNP [dm3] 3R_25225044_SNP [dm6]	G	C	1.010e^-4	0.771	SYNONYMOUS_CODING Cad96Cb DOWNSTREAM CG11851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12028015	3L_12028015_SNP [dm3] 3L_12034915_SNP [dm6]	A	T	1.025e^-4	0.771	INTRON rols	TF binding site BDTNP1_TFBS_twi
2L	9257732	2L_9257732_SNP [dm3] 2L_9257732_SNP [dm6]	T	A	1.030e^-4	0.771	INTRON Ggamma30A
X	21457279	X_21457279_SNP [dm3] X_21586252_SNP [dm6]	A	T	1.030e^-4	0.771	INTERGENIC
3L	17458369	3L_17458369_SNP [dm3] 3L_17465269_SNP [dm6]	G	A	1.031e^-4	0.771	UPSTREAM CG7603 INTERGENIC
3L	3314303	3L_3314303_SNP [dm3] 3L_3314303_SNP [dm6]	C	G	1.034e^-4	0.771	UPSTREAM Drsl2 & 1 other DOWNSTREAM ZnT63C INTERGENIC
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	1.037e^-4	0.771	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	10417438	2L_10417438_SNP [dm3] 2L_10417438_SNP [dm6]	G	C	1.040e^-4	0.771	SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10077483	3L_10077483_SNP [dm3] 3L_10084383_SNP [dm6]	T	C	1.052e^-4	0.771	INTRON dpr6
2L	15596991	2L_15596991_SNP [dm3] 2L_15596991_SNP [dm6]	A	G	1.057e^-4	0.771	INTERGENIC
3R	8362211	3R_8362211_SNP [dm3] 3R_12536489_SNP [dm6]	T	C	1.061e^-4	0.771	INTRON Octbeta3R
2R	8514692	2R_8514692_SNP [dm3] 2R_12627187_SNP [dm6]	G	C	1.061e^-4	0.771	INTRON CG17760
3L	7489736	3L_7489736_SNP [dm3] 3L_7496636_SNP [dm6]	G	T	1.062e^-4	0.771	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2L	9449506	2L_9449506_SNP [dm3] 2L_9449506_SNP [dm6]	G	T	1.065e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13458320	3R_13458320_SNP [dm3] 3R_17632598_SNP [dm6]	G	A	1.066e^-4	0.771	DOWNSTREAM tRNA:CR31573 INTRON CG43175
2R	12190549	2R_12190549_SNP [dm3] 2R_16303044_SNP [dm6]	G	A	1.075e^-4	0.771	EXON CR45232
2R	4655367	2R_4655367_SNP [dm3] 2R_8767862_SNP [dm6]	G	A	1.077e^-4	0.771	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2076749	2L_2076749_SNP [dm3] 2L_2076749_SNP [dm6]	G	C	1.078e^-4	0.771	INTRON dpr3
3L	18656437	3L_18656437_SNP [dm3] 3L_18663337_SNP [dm6]	T	C	1.087e^-4	0.771	INTRON MYPT-75D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19773183	3R_19773183_SNP [dm3] 3R_23947461_SNP [dm6]	C	T	1.087e^-4	0.771	INTRON CG12268
2L	2601350	2L_2601350_SNP [dm3] 2L_2601350_SNP [dm6]	G	A	1.088e^-4	0.771	EXON CR44789
3L	14093141	3L_14093141_SNP [dm3] 3L_14100041_SNP [dm6]	T	G	1.095e^-4	0.771	INTERGENIC
3R	8413993	3R_8413993_DEL [dm3] 3R_12588271_DEL [dm6]	TAT	T	1.096e^-4	0.771	INTRON Octbeta2R	TF binding site mE1_TFBS_inv
2L	7521100	2L_7521100_SNP [dm3] 2L_7521100_SNP [dm6]	T	A	1.101e^-4	0.771	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	27121688	3R_27121688_INS [dm3] 3R_31295966_INS [dm6]	T	TT	1.102e^-4	0.771	INTERGENIC
2L	2541915	2L_2541915_SNP [dm3] 2L_2541915_SNP [dm6]	G	A	1.102e^-4	0.771	INTERGENIC
3R	23443740	3R_23443740_SNP [dm3] 3R_27618018_SNP [dm6]	T	C	1.102e^-4	0.771	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2L	17430625	2L_17430625_SNP [dm3] 2L_17430625_SNP [dm6]	T	C	1.103e^-4	0.771	DOWNSTREAM CR44409 INTRON Dif
3R	15058137	3R_15058137_SNP [dm3] 3R_19232415_SNP [dm6]	G	T	1.106e^-4	0.771	NON_SYNONYMOUS_CODING unc79
2L	9771155	2L_9771155_SNP [dm3] 2L_9771155_SNP [dm6]	C	T	1.108e^-4	0.771	SYNONYMOUS_STOP ppk16 UPSTREAM ppk18 DOWNSTREAM CG17633
2R	20177404	2R_20177404_SNP [dm3] 2R_24289881_SNP [dm6]	A	T	1.110e^-4	0.771	INTRON nvy	TF binding site mE1_TFBS_chinmo
2L	8332725	2L_8332725_INS [dm3] 2L_8332725_INS [dm6]	T	TACTGCATTCTGCAT...	1.116e^-4	0.771	UTR_3_PRIME CG14275
2R	16647399	2R_16647399_SNP [dm3] 2R_20759894_SNP [dm6]	C	T	1.121e^-4	0.771	INTERGENIC
2L	12077560	2L_12077560_SNP [dm3] 2L_12077560_SNP [dm6]	A	G	1.122e^-4	0.771	SYNONYMOUS_CODING CG14947	regulatory region REDfly_CRMs
2R	4192809	2R_4192809_SNP [dm3] 2R_8305304_SNP [dm6]	T	A	1.122e^-4	0.771	DOWNSTREAM CR44447 INTERGENIC
2R	7119874	2R_7119874_SNP [dm3] 2R_11232369_SNP [dm6]	C	G	1.128e^-4	0.771	UTR_5_PRIME metro DOWNSTREAM CG13218	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	19888827	2L_19888827_SNP [dm3] 2L_19888827_SNP [dm6]	G	A	1.141e^-4	0.771	INTRON sick	TF binding site mE1_TFBS_chinmo
3L	13024191	3L_13024191_SNP [dm3] 3L_13031091_SNP [dm6]	G	T	1.143e^-4	0.771	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	8513177	3L_8513177_SNP [dm3] 3L_8520077_SNP [dm6]	G	C	1.144e^-4	0.771	SYNONYMOUS_CODING GstO3 UPSTREAM se
2L	20500774	2L_20500774_SNP [dm3] 2L_20500774_SNP [dm6]	C	T	1.146e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10417448	2L_10417448_SNP [dm3] 2L_10417448_SNP [dm6]	A	G	1.162e^-4	0.771	NON_SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3399365	3L_3399365_SNP [dm3] 3L_3399365_SNP [dm6]	T	A	1.164e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11150009	2L_11150009_SNP [dm3] 2L_11150009_SNP [dm6]	G	T	1.168e^-4	0.771	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	3395258	3L_3395258_SNP [dm3] 3L_3395258_SNP [dm6]	C	T	1.169e^-4	0.771	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	19265497	3L_19265497_SNP [dm3] 3L_19272397_SNP [dm6]	C	A	1.169e^-4	0.771	SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3R	14054595	3R_14054595_SNP [dm3] 3R_18228873_SNP [dm6]	G	C	1.170e^-4	0.771	DOWNSTREAM Mdh2 INTERGENIC
2R	6185201	2R_6185201_SNP [dm3] 2R_10297696_SNP [dm6]	G	C	1.175e^-4	0.771	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10386555	2R_10386555_SNP [dm3] 2R_14499050_SNP [dm6]	C	A	1.182e^-4	0.771	SYNONYMOUS_CODING Cpsf160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1867787	3R_1867787_SNP [dm3] 3R_6042065_SNP [dm6]	A	T	1.190e^-4	0.771	INTERGENIC
2L	9449504	2L_9449504_SNP [dm3] 2L_9449504_SNP [dm6]	T	A	1.192e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15764369	2L_15764369_SNP [dm3] 2L_15764369_SNP [dm6]	C	T	1.201e^-4	0.771	UTR_5_PRIME CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20177402	2R_20177402_SNP [dm3] 2R_24289879_SNP [dm6]	A	G	1.206e^-4	0.771	INTRON nvy	TF binding site mE1_TFBS_chinmo
2L	20329874	2L_20329874_SNP [dm3] 2L_20329874_SNP [dm6]	T	C	1.207e^-4	0.771	INTRON spir
3L	3399371	3L_3399371_SNP [dm3] 3L_3399371_SNP [dm6]	C	T	1.207e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3399372	3L_3399372_SNP [dm3] 3L_3399372_SNP [dm6]	C	T	1.207e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16552671	2L_16552671_SNP [dm3] 2L_16552671_SNP [dm6]	C	T	1.209e^-4	0.771	INTRON CG42389
3L	13023895	3L_13023895_DEL [dm3] 3L_13030795_DEL [dm6]	AAA	A	1.216e^-4	0.771	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15722470	3R_15722470_SNP [dm3] 3R_19896748_SNP [dm6]	G	C	1.224e^-4	0.771	DOWNSTREAM CG4538 INTRON CG4733
2L	17810678	2L_17810678_SNP [dm3] 2L_17810678_SNP [dm6]	A	T	1.225e^-4	0.771	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	1978298	3R_1978298_SNP [dm3] 3R_6152576_SNP [dm6]	A	T	1.226e^-4	0.771	INTRON CG31559
2L	1127106	2L_1127106_SNP [dm3] 2L_1127106_SNP [dm6]	G	T	1.226e^-4	0.771	INTRON Pino
3R	13466314	3R_13466314_SNP [dm3] 3R_17640592_SNP [dm6]	A	G	1.232e^-4	0.771	DOWNSTREAM CR45222 INTRON CG43175
X	21457124	X_21457124_SNP [dm3] X_21586097_SNP [dm6]	G	T	1.246e^-4	0.771	INTERGENIC
2L	3106687	2L_3106687_SNP [dm3] 2L_3106687_SNP [dm6]	A	G	1.249e^-4	0.771	INTRON toc	TF binding site mE1_TFBS_Trl
3L	19261737	3L_19261737_SNP [dm3] 3L_19268637_SNP [dm6]	A	G	1.253e^-4	0.771	UPSTREAM CG14085 INTRON CG9629
3R	1977898	3R_1977898_SNP [dm3] 3R_6152176_SNP [dm6]	T	A	1.254e^-4	0.771	INTRON CG31559
2L	7274855	2L_7274855_SNP [dm3] 2L_7274855_SNP [dm6]	T	G	1.256e^-4	0.771	INTRON Wnt4
2R	19597961	2R_19597961_SNP [dm3] 2R_23710438_SNP [dm6]	T	G	1.265e^-4	0.771	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8413623	3R_8413623_SNP [dm3] 3R_12587901_SNP [dm6]	A	T	1.267e^-4	0.771	INTRON Octbeta2R
2R	9836578	2R_9836578_SNP [dm3] 2R_13949073_SNP [dm6]	T	C	1.268e^-4	0.771	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1807081	3R_1807081_SNP [dm3] 3R_5981359_SNP [dm6]	G	C	1.275e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18621752	2R_18621752_SNP [dm3] 2R_22734247_SNP [dm6]	T	G	1.276e^-4	0.771	INTRON jbug
2L	16107585	2L_16107585_SNP [dm3] 2L_16107585_SNP [dm6]	C	T	1.281e^-4	0.771	INTERGENIC
2R	12619477	2R_12619477_SNP [dm3] 2R_16731972_SNP [dm6]	G	A	1.281e^-4	0.771	UTR_5_PRIME CG30463 UPSTREAM CG30463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	6615374	3L_6615374_SNP [dm3] 3L_6622274_SNP [dm6]	A	G	1.286e^-4	0.771	INTERGENIC
2R	11306678	2R_11306678_SNP [dm3] 2R_15419173_SNP [dm6]	G	A	1.287e^-4	0.771	INTRON CG43729
3L	10315322	3L_10315322_SNP [dm3] 3L_10322222_SNP [dm6]	A	G	1.287e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16574667	2R_16574667_SNP [dm3] 2R_20687162_SNP [dm6]	T	A	1.290e^-4	0.771	UPSTREAM Gr57a INTERGENIC
2R	20175530	2R_20175530_SNP [dm3] 2R_24288007_SNP [dm6]	C	T	1.293e^-4	0.771	INTRON nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13169544	3R_13169544_SNP [dm3] 3R_17343822_SNP [dm6]	G	A	1.307e^-4	0.771	INTRON beat-IIa
2L	18870340	2L_18870340_SNP [dm3] 2L_18870340_SNP [dm6]	T	G	1.310e^-4	0.771	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_shn mE1_TFBS_HSA
2R	16031076	2R_16031076_SNP [dm3] 2R_20143571_SNP [dm6]	G	T	1.310e^-4	0.771	INTERGENIC
X	17253376	X_17253376_DEL [dm3] X_17359343_DEL [dm6]	ACTGAAAGCTA...	A	1.310e^-4	0.771	INTERGENIC
2L	12128093	2L_12128093_SNP [dm3] 2L_12128093_SNP [dm6]	A	T	1.313e^-4	0.771	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_HSA
X	5534186	X_5534186_SNP [dm3] X_5640153_SNP [dm6]	T	A	1.313e^-4	0.771	INTRON CG42492
3L	9555984	3L_9555984_SNP [dm3] 3L_9562884_SNP [dm6]	A	T	1.313e^-4	0.771	INTRON CG42673
3R	25558833	3R_25558833_SNP [dm3] 3R_29733111_SNP [dm6]	C	A	1.320e^-4	0.771	UTR_3_PRIME Kul
3R	25558834	3R_25558834_SNP [dm3] 3R_29733112_SNP [dm6]	A	T	1.320e^-4	0.771	UTR_3_PRIME Kul
3L	2838213	3L_2838213_SNP [dm3] 3L_2838213_SNP [dm6]	A	G	1.324e^-4	0.771	INTRON CG43444
2R	20176252	2R_20176252_SNP [dm3] 2R_24288729_SNP [dm6]	G	A	1.324e^-4	0.771	NON_SYNONYMOUS_CODING nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6185222	2R_6185222_SNP [dm3] 2R_10297717_SNP [dm6]	C	T	1.338e^-4	0.771	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20368463	2L_20368463_DEL [dm3] 2L_20368463_DEL [dm6]	TGAGTGAT	T	1.338e^-4	0.771	INTERGENIC
X	20860463	X_20860463_SNP [dm3] X_20989436_SNP [dm6]	C	A	1.349e^-4	0.771	INTERGENIC
X	2305908	X_2305908_SNP [dm3] X_2411875_SNP [dm6]	A	T	1.363e^-4	0.771	UPSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10028909	2L_10028909_SNP [dm3] 2L_10028909_SNP [dm6]	C	T	1.363e^-4	0.771	SYNONYMOUS_CODING CG13127
2L	7467450	2L_7467450_DEL [dm3] 2L_7467450_DEL [dm6]	GTATAG	G	1.367e^-4	0.771	INTRON CG6055	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13169540	3R_13169540_SNP [dm3] 3R_17343818_SNP [dm6]	C	T	1.372e^-4	0.771	INTRON beat-IIa
2R	13847522	2R_13847522_SNP [dm3] 2R_17960017_SNP [dm6]	A	G	1.373e^-4	0.771	INTERGENIC
3R	10763108	3R_10763108_DEL [dm3] 3R_14937386_DEL [dm6]	CC	C	1.375e^-4	0.771	INTERGENIC
3L	6680510	3L_6680510_SNP [dm3] 3L_6687410_SNP [dm6]	G	C	1.377e^-4	0.771	INTERGENIC
2R	6810498	2R_6810498_SNP [dm3] 2R_10922993_SNP [dm6]	C	T	1.382e^-4	0.771	INTERGENIC
2L	2601348	2L_2601348_SNP [dm3] 2L_2601348_SNP [dm6]	T	A	1.386e^-4	0.771	EXON CR44789
2R	8534305	2R_8534305_SNP [dm3] 2R_12646800_SNP [dm6]	C	T	1.392e^-4	0.771	INTRON CG8785
3L	3316804	3L_3316804_SNP [dm3] 3L_3316804_SNP [dm6]	G	A	1.397e^-4	0.771	UTR_5_PRIME Drsl5 DOWNSTREAM Drsl4
2L	7133460	2L_7133460_SNP [dm3] 2L_7133460_SNP [dm6]	C	T	1.403e^-4	0.771	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8771170	2L_8771170_SNP [dm3] 2L_8771170_SNP [dm6]	C	T	1.410e^-4	0.771	SYNONYMOUS_CODING CG9465
3R	14609742	3R_14609742_SNP [dm3] 3R_18784020_SNP [dm6]	T	C	1.422e^-4	0.771	INTRON CG7720
X	2306346	X_2306346_SNP [dm3] X_2412313_SNP [dm6]	T	C	1.425e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Kr
X	6108306	X_6108306_INS [dm3] X_6214273_INS [dm6]	C	CGCACAC	1.429e^-4	0.771	INTERGENIC
2R	7407765	2R_7407765_SNP [dm3] 2R_11520260_SNP [dm6]	C	T	1.436e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9544005	3R_9544005_SNP [dm3] 3R_13718283_SNP [dm6]	C	T	1.442e^-4	0.771	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4706106	2R_4706106_SNP [dm3] 2R_8818601_SNP [dm6]	C	A	1.442e^-4	0.771	INTRON sns	TF binding site mE1_TFBS_chinmo
X	10855548	X_10855548_SNP [dm3] X_10961515_SNP [dm6]	C	T	1.448e^-4	0.771	INTRON Myo10A
3L	8513171	3L_8513171_SNP [dm3] 3L_8520071_SNP [dm6]	T	C	1.457e^-4	0.771	SYNONYMOUS_CODING GstO3 UPSTREAM se
X	4596131	X_4596131_SNP [dm3] X_4702098_SNP [dm6]	A	G	1.469e^-4	0.771	UPSTREAM l_1_G0334 DOWNSTREAM ctp INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	11586279	X_11586279_SNP [dm3] X_11692246_SNP [dm6]	C	T	1.472e^-4	0.771	UTR_3_PRIME bif INTRON bif
2L	20328752	2L_20328752_DEL [dm3] 2L_20328752_DEL [dm6]	ACATG	A	1.475e^-4	0.771	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23444180	3R_23444180_SNP [dm3] 3R_27618458_SNP [dm6]	A	G	1.480e^-4	0.771	INTRON Tusp
2R	17794607	2R_17794607_DEL [dm3] 2R_21907102_DEL [dm6]	CAGGA	C	1.481e^-4	0.771	INTRON Fili
2R	7128704	2R_7128704_SNP [dm3] 2R_11241199_SNP [dm6]	C	A	1.482e^-4	0.771	DOWNSTREAM Listericin INTERGENIC
2L	4873127	2L_4873127_SNP [dm3] 2L_4873127_SNP [dm6]	A	T	1.486e^-4	0.771	INTRON pog
2L	17780581	2L_17780581_SNP [dm3] 2L_17780581_SNP [dm6]	T	C	1.493e^-4	0.771	INTERGENIC
2L	9033491	2L_9033491_SNP [dm3] 2L_9033491_SNP [dm6]	T	A	1.497e^-4	0.771	INTERGENIC
2L	17781112	2L_17781112_SNP [dm3] 2L_17781112_SNP [dm6]	C	T	1.500e^-4	0.771	INTERGENIC
3R	1791849	3R_1791849_SNP [dm3] 3R_5966127_SNP [dm6]	T	A	1.510e^-4	0.771	EXON CR44925
2L	7518605	2L_7518605_SNP [dm3] 2L_7518605_SNP [dm6]	T	C	1.511e^-4	0.771	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9449510	2L_9449510_SNP [dm3] 2L_9449510_SNP [dm6]	T	A	1.511e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	5140988	3R_5140988_SNP [dm3] 3R_9315266_SNP [dm6]	A	T	1.514e^-4	0.771	INTRON CG8861
X	21456807	X_21456807_SNP [dm3] X_21585780_SNP [dm6]	A	C	1.516e^-4	0.771	INTERGENIC	transposable element FlyBase
3L	16909175	3L_16909175_SNP [dm3] 3L_16916075_SNP [dm6]	A	G	1.518e^-4	0.771	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	5469579	3R_5469579_SNP [dm3] 3R_9643857_SNP [dm6]	C	A	1.520e^-4	0.771	INTRON Dh44
2R	3556328	2R_3556328_SNP [dm3] 2R_7668823_SNP [dm6]	A	G	1.522e^-4	0.771	SYNONYMOUS_CODING CG12042	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	19044028	2R_19044028_SNP [dm3] 2R_23156505_SNP [dm6]	C	T	1.530e^-4	0.771	INTRON CG9899
3L	5523593	3L_5523593_SNP [dm3] 3L_5530493_SNP [dm6]	A	G	1.531e^-4	0.771	INTERGENIC
2L	8413233	2L_8413233_INS [dm3] 2L_8413233_INS [dm6]	G	GATCAGTTG	1.538e^-4	0.771	UTR_3_PRIME CG13398
3L	17378863	3L_17378863_SNP [dm3] 3L_17385763_SNP [dm6]	G	A	1.538e^-4	0.771	NON_SYNONYMOUS_CODING CG13731	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1974105	3R_1974105_SNP [dm3] 3R_6148383_SNP [dm6]	G	A	1.541e^-4	0.771	INTERGENIC
3R	2023257	3R_2023257_SNP [dm3] 3R_6197535_SNP [dm6]	C	T	1.547e^-4	0.771	INTERGENIC
2L	20327295	2L_20327295_SNP [dm3] 2L_20327295_SNP [dm6]	G	C	1.552e^-4	0.771	INTRON spir
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	1.564e^-4	0.771	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6515206	2L_6515206_SNP [dm3] 2L_6515206_SNP [dm6]	C	T	1.569e^-4	0.771	INTRON CG31637
3L	2838017	3L_2838017_SNP [dm3] 3L_2838017_SNP [dm6]	A	G	1.572e^-4	0.771	INTRON CG43444
X	10479869	X_10479869_SNP [dm3] X_10585836_SNP [dm6]	T	C	1.578e^-4	0.771	UPSTREAM spri INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17255699	X_17255699_SNP [dm3] X_17361666_SNP [dm6]	T	G	1.583e^-4	0.771	INTERGENIC
2L	11230900	2L_11230900_SNP [dm3] 2L_11230900_SNP [dm6]	G	A	1.588e^-4	0.771	INTRON ab
3L	8467928	3L_8467928_SNP [dm3] 3L_8474828_SNP [dm6]	T	C	1.591e^-4	0.771	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19273793	3L_19273793_SNP [dm3] 3L_19280693_SNP [dm6]	C	T	1.593e^-4	0.771	SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2R	20177405	2R_20177405_SNP [dm3] 2R_24289882_SNP [dm6]	A	G	1.595e^-4	0.771	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	4603427	2R_4603427_DEL [dm3] 2R_8715922_DEL [dm6]	ACATTGTTTGGAGA...	A	1.600e^-4	0.771	DOWNSTREAM PGRP-SC1b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	1.600e^-4	0.771	INTERGENIC
3R	8039717	3R_8039717_SNP [dm3] 3R_12213995_SNP [dm6]	C	G	1.615e^-4	0.771	UTR_3_PRIME CG4848 UPSTREAM CG14742
3L	14945221	3L_14945221_DEL [dm3] 3L_14952121_DEL [dm6]	TATA	T	1.615e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1739855	2R_1739855_SNP [dm3] 2R_5852350_SNP [dm6]	C	A	1.620e^-4	0.771	INTRON dpr12
2L	3337124	2L_3337124_SNP [dm3] 2L_3337124_SNP [dm6]	A	G	1.620e^-4	0.771	INTRON E23	TF binding site mE1_TFBS_cad
2L	3138890	2L_3138890_SNP [dm3] 2L_3138890_SNP [dm6]	G	A	1.629e^-4	0.771	INTRON toc
X	10855436	X_10855436_SNP [dm3] X_10961403_SNP [dm6]	A	G	1.630e^-4	0.771	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	6208761	2R_6208761_SNP [dm3] 2R_10321256_SNP [dm6]	C	T	1.635e^-4	0.771	SYNONYMOUS_CODING Ndg UPSTREAM CG34222 DOWNSTREAM CG42732
2L	16078989	2L_16078989_SNP [dm3] 2L_16078989_SNP [dm6]	C	A	1.637e^-4	0.771	INTRON beat-Ia
2L	11866769	2L_11866769_SNP [dm3] 2L_11866769_SNP [dm6]	G	A	1.641e^-4	0.771	INTRON Pde1c
2R	8528799	2R_8528799_SNP [dm3] 2R_12641294_SNP [dm6]	C	A	1.644e^-4	0.771	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6151412	X_6151412_SNP [dm3] X_6257379_SNP [dm6]	C	T	1.645e^-4	0.771	UTR_3_PRIME Spx DOWNSTREAM schlank
3L	17339816	3L_17339816_SNP [dm3] 3L_17346716_SNP [dm6]	A	G	1.651e^-4	0.771	INTRON Mip	TF binding site mE1_TFBS_chinmo mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7457930	2L_7457930_SNP [dm3] 2L_7457930_SNP [dm6]	A	G	1.657e^-4	0.771	UPSTREAM Gr28b INTRON Gr28b
2L	15980108	2L_15980108_SNP [dm3] 2L_15980108_SNP [dm6]	T	G	1.665e^-4	0.771	SYNONYMOUS_CODING CG10839
2R	4405668	2R_4405668_SNP [dm3] 2R_8518163_SNP [dm6]	A	G	1.667e^-4	0.771	INTRON mtt
3R	10675564	3R_10675564_SNP [dm3] 3R_14849842_SNP [dm6]	A	T	1.672e^-4	0.771	INTRON btsz
2L	1148352	2L_1148352_SNP [dm3] 2L_1148352_SNP [dm6]	C	A	1.675e^-4	0.771	NON_SYNONYMOUS_CODING CG4749 DOWNSTREAM MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8656983	2R_8656983_SNP [dm3] 2R_12769478_SNP [dm6]	A	C	1.676e^-4	0.771	INTERGENIC
2R	2658029	2R_2658029_SNP [dm3] 2R_6770524_SNP [dm6]	T	A	1.678e^-4	0.771	UPSTREAM Epac INTRON Epac
2R	9096415	2R_9096415_SNP [dm3] 2R_13208910_SNP [dm6]	G	A	1.680e^-4	0.771	SYNONYMOUS_CODING FLASH DOWNSTREAM CG30058 & 2 others
3R	18218695	3R_18218695_SNP [dm3] 3R_22392973_SNP [dm6]	C	T	1.681e^-4	0.771	SYNONYMOUS_CODING CG13857 DOWNSTREAM CG7059	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10675557	3R_10675557_SNP [dm3] 3R_14849835_SNP [dm6]	A	G	1.682e^-4	0.771	INTRON btsz
2L	7452726	2L_7452726_SNP [dm3] 2L_7452726_SNP [dm6]	A	T	1.686e^-4	0.771	SYNONYMOUS_CODING Gr28a	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	14979945	3R_14979945_SNP [dm3] 3R_19154223_SNP [dm6]	C	T	1.690e^-4	0.771	UTR_3_PRIME CG11779 UPSTREAM CG5835 DOWNSTREAM CG11779
2L	7274850	2L_7274850_MNP [dm3] 2L_7274850_MNP [dm6]	TTT	AGG	1.695e^-4	0.771	INTRON Wnt4
3R	22729098	3R_22729098_MNP [dm3] 3R_26903376_MNP [dm6]	CTT	TCG	1.706e^-4	0.771	INTRON T48	regulatory region REDfly_CRMs
3R	11531049	3R_11531049_SNP [dm3] 3R_15705327_SNP [dm6]	T	A	1.708e^-4	0.771	INTRON CG5404
3R	17204451	3R_17204451_SNP [dm3] 3R_21378729_SNP [dm6]	T	A	1.718e^-4	0.771	UPSTREAM tin INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17543867	3R_17543867_INS [dm3] 3R_21718145_INS [dm6]	C	CCTCCTAAC	1.722e^-4	0.771	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
X	5653155	X_5653155_SNP [dm3] X_5759122_SNP [dm6]	C	T	1.722e^-4	0.771	UTR_3_PRIME CG15771 DOWNSTREAM MAPk-Ak2
2R	15410996	2R_15410996_SNP [dm3] 2R_19523491_SNP [dm6]	A	G	1.723e^-4	0.771	UTR_3_PRIME sm DOWNSTREAM sm
2L	12167463	2L_12167463_SNP [dm3] 2L_12167463_SNP [dm6]	A	T	1.732e^-4	0.771	DOWNSTREAM ZnT33D INTRON CG31760
3R	2023453	3R_2023453_SNP [dm3] 3R_6197731_SNP [dm6]	A	G	1.734e^-4	0.771	INTERGENIC
X	5448058	X_5448058_SNP [dm3] X_5554025_SNP [dm6]	A	C	1.736e^-4	0.771	INTRON Vsx2
3R	2023743	3R_2023743_SNP [dm3] 3R_6198021_SNP [dm6]	T	C	1.741e^-4	0.771	UPSTREAM Osi24 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9555080	3L_9555080_DEL [dm3] 3L_9561980_DEL [dm6]	GT	G	1.743e^-4	0.771	INTRON CG42673
2R	7699457	2R_7699457_SNP [dm3] 2R_11811952_SNP [dm6]	T	C	1.744e^-4	0.771	UTR_3_PRIME ths	TF binding site BDTNP1_TFBS_twi
3R	18624608	3R_18624608_SNP [dm3] 3R_22798886_SNP [dm6]	C	G	1.746e^-4	0.771	INTERGENIC
2L	13142033	2L_13142033_SNP [dm3] 2L_13142033_SNP [dm6]	G	A	1.748e^-4	0.771	DOWNSTREAM CG9928 INTERGENIC
2L	7274845	2L_7274845_MNP [dm3] 2L_7274845_MNP [dm6]	TTA	AAG	1.749e^-4	0.771	INTRON Wnt4
3L	5734188	3L_5734188_SNP [dm3] 3L_5741088_SNP [dm6]	T	A	1.749e^-4	0.771	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8114217	2R_8114217_SNP [dm3] 2R_12226712_SNP [dm6]	G	A	1.753e^-4	0.771	START_GAINED CG8854 UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
X	10693057	X_10693057_SNP [dm3] X_10799024_SNP [dm6]	A	T	1.757e^-4	0.771	INTRON Imp
2R	13112693	2R_13112693_SNP [dm3] 2R_17225188_SNP [dm6]	T	C	1.757e^-4	0.771	INTRON mbl
3L	14042122	3L_14042122_SNP [dm3] 3L_14049022_SNP [dm6]	G	T	1.757e^-4	0.771	NON_SYNONYMOUS_CODING blue SPLICE_SITE_REGION blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8437534	3R_8437534_SNP [dm3] 3R_12611812_SNP [dm6]	A	G	1.767e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	20550289	2L_20550289_SNP [dm3] 2L_20550289_SNP [dm6]	T	G	1.772e^-4	0.771	INTERGENIC
2L	17810776	2L_17810776_SNP [dm3] 2L_17810776_SNP [dm6]	C	A	1.773e^-4	0.771	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	27271243	3R_27271243_SNP [dm3] 3R_31445521_SNP [dm6]	T	A	1.779e^-4	0.771	INTRON Gprk2
3L	1630026	3L_1630026_SNP [dm3] 3L_1630026_SNP [dm6]	T	A	1.784e^-4	0.771	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17458393	3L_17458393_SNP [dm3] 3L_17465293_SNP [dm6]	C	T	1.788e^-4	0.771	UPSTREAM CG7603 INTERGENIC
2L	18735493	2L_18735493_SNP [dm3] 2L_18735493_SNP [dm6]	C	T	1.792e^-4	0.771	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8442848	2R_8442848_SNP [dm3] 2R_12555343_SNP [dm6]	G	A	1.794e^-4	0.771	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17858180	2L_17858180_SNP [dm3] 2L_17858180_SNP [dm6]	T	G	1.799e^-4	0.771	INTRON CadN2
2R	6890237	2R_6890237_SNP [dm3] 2R_11002732_SNP [dm6]	T	C	1.811e^-4	0.771	INTRON luna
2L	12088869	2L_12088869_SNP [dm3] 2L_12088869_SNP [dm6]	A	G	1.816e^-4	0.771	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17571712	2R_17571712_SNP [dm3] 2R_21684207_SNP [dm6]	T	A	1.818e^-4	0.771	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19404099	3R_19404099_SNP [dm3] 3R_23578377_SNP [dm6]	A	C	1.818e^-4	0.771	INTRON beat-IV
2L	20328737	2L_20328737_SNP [dm3] 2L_20328737_SNP [dm6]	C	T	1.832e^-4	0.771	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9987283	3L_9987283_SNP [dm3] 3L_9994183_SNP [dm6]	T	C	1.842e^-4	0.771	INTRON dpr6
2L	2836685	2L_2836685_SNP [dm3] 2L_2836685_SNP [dm6]	T	G	1.842e^-4	0.771	INTRON CG3119
2L	2601431	2L_2601431_SNP [dm3] 2L_2601431_SNP [dm6]	C	T	1.852e^-4	0.771	EXON CR44789
3L	5770996	3L_5770996_SNP [dm3] 3L_5777896_SNP [dm6]	A	C	1.852e^-4	0.771	SYNONYMOUS_CODING Myt1 UPSTREAM vito
2L	7274856	2L_7274856_INS [dm3] 2L_7274856_INS [dm6]	A	AA	1.854e^-4	0.771	INTRON Wnt4
3R	1794202	3R_1794202_SNP [dm3] 3R_5968480_SNP [dm6]	C	A	1.861e^-4	0.771	INTERGENIC
3R	14659240	3R_14659240_SNP [dm3] 3R_18833518_SNP [dm6]	T	C	1.865e^-4	0.771	INTRON CG18208
2L	11189264	2L_11189264_SNP [dm3] 2L_11189264_SNP [dm6]	T	A	1.876e^-4	0.771	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8488994	3L_8488994_SNP [dm3] 3L_8495894_SNP [dm6]	C	T	1.878e^-4	0.771	INTRON CG43163
2R	7688580	2R_7688580_SNP [dm3] 2R_11801075_SNP [dm6]	C	T	1.878e^-4	0.771	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19621379	2R_19621379_SNP [dm3] 2R_23733856_SNP [dm6]	A	T	1.895e^-4	0.771	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other
2L	13044507	2L_13044507_SNP [dm3] 2L_13044507_SNP [dm6]	T	C	1.897e^-4	0.771	INTRON CG9932
3L	8567152	3L_8567152_INS [dm3] 3L_8574052_INS [dm6]	A	AA	1.899e^-4	0.771	UTR_3_PRIME rhea DOWNSTREAM CG6638
2R	17792554	2R_17792554_SNP [dm3] 2R_21905049_SNP [dm6]	G	T	1.899e^-4	0.771	INTRON Fili
2L	16134606	2L_16134606_INS [dm3] 2L_16134606_INS [dm6]	A	AC	1.903e^-4	0.771	DOWNSTREAM CG34168 & 2 others INTERGENIC
2L	16134607	2L_16134607_SNP [dm3] 2L_16134607_SNP [dm6]	G	C	1.903e^-4	0.771	DOWNSTREAM CG34168 & 2 others INTERGENIC
X	17255694	X_17255694_SNP [dm3] X_17361661_SNP [dm6]	T	A	1.904e^-4	0.771	INTERGENIC
X	4019291	X_4019291_SNP [dm3] X_4125258_SNP [dm6]	T	G	1.909e^-4	0.771	SYNONYMOUS_CODING tyf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6991239	2L_6991239_SNP [dm3] 2L_6991239_SNP [dm6]	G	A	1.914e^-4	0.771	INTRON uif
2R	11987186	2R_11987186_SNP [dm3] 2R_16099681_SNP [dm6]	A	T	1.920e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	7510222	2L_7510222_SNP [dm3] 2L_7510222_SNP [dm6]	A	T	1.931e^-4	0.771	INTRON RapGAP1
2R	4694295	2R_4694295_SNP [dm3] 2R_8806790_SNP [dm6]	G	C	1.934e^-4	0.771	INTRON sns
2R	2417595	2R_2417595_SNP [dm3] 2R_6530090_SNP [dm6]	A	G	1.935e^-4	0.771	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13486554	3L_13486554_SNP [dm3] 3L_13493454_SNP [dm6]	G	T	1.935e^-4	0.771	INTRON Tgi
3L	13932173	3L_13932173_SNP [dm3] 3L_13939073_SNP [dm6]	T	C	1.939e^-4	0.771	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2280033	2L_2280033_SNP [dm3] 2L_2280033_SNP [dm6]	G	A	1.945e^-4	0.771	UPSTREAM CR43753 INTERGENIC
2R	8282001	2R_8282001_SNP [dm3] 2R_12394496_SNP [dm6]	C	T	1.946e^-4	0.771	SYNONYMOUS_CODING Or49a UPSTREAM CG30048
2R	5286769	2R_5286769_SNP [dm3] 2R_9399264_SNP [dm6]	C	T	1.954e^-4	0.771	NON_SYNONYMOUS_CODING l_2_k10201 UPSTREAM CG8801 DOWNSTREAM CG33774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6868258	3L_6868258_SNP [dm3] 3L_6875158_SNP [dm6]	G	A	1.954e^-4	0.771	INTERGENIC
X	21527300	X_21527300_SNP [dm3] X_21656273_SNP [dm6]	G	T	1.959e^-4	0.771	INTERGENIC
2R	6180653	2R_6180653_SNP [dm3] 2R_10293148_SNP [dm6]	G	A	1.960e^-4	0.771	INTRON CAP
2L	6176838	2L_6176838_SNP [dm3] 2L_6176838_SNP [dm6]	A	C	1.961e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11813551	2R_11813551_SNP [dm3] 2R_15926046_SNP [dm6]	A	G	1.964e^-4	0.771	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19075308	2L_19075308_SNP [dm3] 2L_19075308_SNP [dm6]	G	C	1.967e^-4	0.771	EXON CR33315	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7511728	2L_7511728_DEL [dm3] 2L_7511728_DEL [dm6]	GC	G	1.967e^-4	0.771	INTRON RapGAP1
3L	7029657	3L_7029657_SNP [dm3] 3L_7036557_SNP [dm6]	T	A	1.969e^-4	0.771	INTRON Mp
X	19200512	X_19200512_DEL [dm3] X_19306479_DEL [dm6]	ATGTT	C	1.980e^-4	0.771	INTRON CG8051
3R	17483687	3R_17483687_SNP [dm3] 3R_21657965_SNP [dm6]	A	C	1.984e^-4	0.771	INTRON E2f
2R	11987188	2R_11987188_SNP [dm3] 2R_16099683_SNP [dm6]	T	C	1.986e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5366654	3L_5366654_DEL [dm3] 3L_5373554_DEL [dm6]	GCCTTAGTCTGTTTG...	G	1.989e^-4	0.771	INTERGENIC
3L	18958448	3L_18958448_SNP [dm3] 3L_18965348_SNP [dm6]	T	A	1.998e^-4	0.771	INTERGENIC
2R	7649747	2R_7649747_SNP [dm3] 2R_11762242_SNP [dm6]	A	G	2.001e^-4	0.771	INTRON ths
X	16774345	X_16774345_SNP [dm3] X_16880312_SNP [dm6]	C	T	2.002e^-4	0.771	INTERGENIC
X	20860471	X_20860471_SNP [dm3] X_20989444_SNP [dm6]	A	C	2.008e^-4	0.771	INTERGENIC
2L	16093604	2L_16093604_SNP [dm3] 2L_16093604_SNP [dm6]	A	G	2.020e^-4	0.771	INTERGENIC
2R	11987136	2R_11987136_SNP [dm3] 2R_16099631_SNP [dm6]	C	G	2.031e^-4	0.771	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11987144	2R_11987144_SNP [dm3] 2R_16099639_SNP [dm6]	A	G	2.032e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2869429	3L_2869429_SNP [dm3] 3L_2869429_SNP [dm6]	A	T	2.038e^-4	0.771	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6889065	3L_6889065_DEL [dm3] 3L_6895965_DEL [dm6]	CTCC	C	2.042e^-4	0.771	INTERGENIC
2R	8114216	2R_8114216_SNP [dm3] 2R_12226711_SNP [dm6]	A	C	2.043e^-4	0.771	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
2L	20517090	2L_20517090_SNP [dm3] 2L_20517090_SNP [dm6]	C	T	2.046e^-4	0.771	INTERGENIC
2L	11150013	2L_11150013_DEL [dm3] 2L_11150013_DEL [dm6]	AA	A	2.056e^-4	0.771	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	18113599	3R_18113599_SNP [dm3] 3R_22287877_SNP [dm6]	G	A	2.062e^-4	0.771	SYNONYMOUS_CODING SKIP
3R	16995490	3R_16995490_SNP [dm3] 3R_21169768_SNP [dm6]	C	T	2.063e^-4	0.771	INTRON SNF4Agamma
2R	1993577	2R_1993577_SNP [dm3] 2R_6106072_SNP [dm6]	G	A	2.068e^-4	0.771	INTRON EcR
3L	12028027	3L_12028027_SNP [dm3] 3L_12034927_SNP [dm6]	A	C	2.068e^-4	0.771	INTRON rols	TF binding site BDTNP1_TFBS_twi
2R	13847647	2R_13847647_SNP [dm3] 2R_17960142_SNP [dm6]	T	G	2.085e^-4	0.771	INTERGENIC
2R	8942266	2R_8942266_SNP [dm3] 2R_13054761_SNP [dm6]	A	T	2.090e^-4	0.771	DOWNSTREAM Drl-2 INTERGENIC
3R	7308664	3R_7308664_SNP [dm3] 3R_11482942_SNP [dm6]	A	G	2.093e^-4	0.771	INTERGENIC
3R	10046861	3R_10046861_SNP [dm3] 3R_14221139_SNP [dm6]	C	A	2.095e^-4	0.771	SYNONYMOUS_CODING CG33109 UPSTREAM CG31326 DOWNSTREAM Sp212
3R	1806645	3R_1806645_SNP [dm3] 3R_5980923_SNP [dm6]	A	T	2.096e^-4	0.771	INTERGENIC
2L	5272780	2L_5272780_SNP [dm3] 2L_5272780_SNP [dm6]	A	G	2.097e^-4	0.771	SYNONYMOUS_CODING Bsg25D
2L	17572865	2L_17572865_SNP [dm3] 2L_17572865_SNP [dm6]	A	G	2.100e^-4	0.771	INTERGENIC
3R	12969941	3R_12969941_SNP [dm3] 3R_17144219_SNP [dm6]	A	T	2.104e^-4	0.771	DOWNSTREAM m-cup INTERGENIC
3R	17543984	3R_17543984_SNP [dm3] 3R_21718262_SNP [dm6]	A	T	2.105e^-4	0.771	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2L	16774894	2L_16774894_SNP [dm3] 2L_16774894_SNP [dm6]	A	G	2.111e^-4	0.771	INTRON Mhc
2L	6166978	2L_6166978_SNP [dm3] 2L_6166978_SNP [dm6]	G	A	2.111e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4656913	3L_4656913_SNP [dm3] 3L_4656913_SNP [dm6]	A	C	2.113e^-4	0.771	INTRON axo
2R	6188366	2R_6188366_SNP [dm3] 2R_10300861_SNP [dm6]	T	A	2.113e^-4	0.771	UPSTREAM CAP INTRON CAP
2L	7723015	2L_7723015_SNP [dm3] 2L_7723015_SNP [dm6]	G	T	2.125e^-4	0.771	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
X	11066735	X_11066735_SNP [dm3] X_11172702_SNP [dm6]	T	A	2.136e^-4	0.771	INTERGENIC
3R	3125550	3R_3125550_SNP [dm3] 3R_7299828_SNP [dm6]	T	C	2.142e^-4	0.771	INTRON rn
X	17206123	X_17206123_SNP [dm3] X_17312090_SNP [dm6]	T	C	2.144e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9092929	2L_9092929_SNP [dm3] 2L_9092929_SNP [dm6]	T	G	2.148e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	18690873	3R_18690873_SNP [dm3] 3R_22865151_SNP [dm6]	T	A	2.153e^-4	0.771	INTERGENIC
2L	7488818	2L_7488818_DEL [dm3] 2L_7488818_DEL [dm6]	CC	C	2.156e^-4	0.771	INTRON Ziz
2L	17430636	2L_17430636_SNP [dm3] 2L_17430636_SNP [dm6]	T	A	2.158e^-4	0.771	DOWNSTREAM CR44409 INTRON Dif
2L	20531835	2L_20531835_SNP [dm3] 2L_20531835_SNP [dm6]	A	G	2.164e^-4	0.771	DOWNSTREAM CG44270 INTERGENIC
3R	11531057	3R_11531057_SNP [dm3] 3R_15705335_SNP [dm6]	T	A	2.171e^-4	0.771	INTRON CG5404
2L	18351836	2L_18351836_SNP [dm3] 2L_18351836_SNP [dm6]	A	G	2.177e^-4	0.771	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
3L	18544739	3L_18544739_SNP [dm3] 3L_18551639_SNP [dm6]	C	T	2.178e^-4	0.771	INTERGENIC
3L	1145320	3L_1145320_DEL [dm3] 3L_1145320_DEL [dm6]	TTGT	T	2.186e^-4	0.771	INTRON bab2
3L	18544767	3L_18544767_SNP [dm3] 3L_18551667_SNP [dm6]	T	C	2.188e^-4	0.771	INTERGENIC
2R	11429802	2R_11429802_SNP [dm3] 2R_15542297_SNP [dm6]	T	A	2.189e^-4	0.771	UTR_3_PRIME Vha36-1 UPSTREAM CG8187 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7789671	2R_7789671_SNP [dm3] 2R_11902166_SNP [dm6]	G	A	2.192e^-4	0.771	DOWNSTREAM Zip48C INTRON MCPH1
2L	20345723	2L_20345723_SNP [dm3] 2L_20345723_SNP [dm6]	C	A	2.198e^-4	0.771	DOWNSTREAM spir INTRON spir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1977970	3R_1977970_SNP [dm3] 3R_6152248_SNP [dm6]	G	A	2.206e^-4	0.771	INTRON CG31559
X	21511037	X_21511037_SNP [dm3] X_21640010_SNP [dm6]	C	T	2.206e^-4	0.771	INTERGENIC
2L	2641024	2L_2641024_SNP [dm3] 2L_2641024_SNP [dm6]	T	C	2.210e^-4	0.771	INTERGENIC
2L	17574012	2L_17574012_SNP [dm3] 2L_17574012_SNP [dm6]	A	G	2.211e^-4	0.771	UPSTREAM mir-287 INTERGENIC
2L	2280028	2L_2280028_SNP [dm3] 2L_2280028_SNP [dm6]	A	G	2.211e^-4	0.771	UPSTREAM CR43753 INTERGENIC
2R	17793190	2R_17793190_SNP [dm3] 2R_21905685_SNP [dm6]	A	C	2.212e^-4	0.771	INTRON Fili
2R	6533788	2R_6533788_SNP [dm3] 2R_10646283_SNP [dm6]	G	A	2.213e^-4	0.771	SYNONYMOUS_CODING Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2641059	2L_2641059_SNP [dm3] 2L_2641059_SNP [dm6]	T	A	2.216e^-4	0.771	INTERGENIC
3L	9087854	3L_9087854_SNP [dm3] 3L_9094754_SNP [dm6]	A	G	2.226e^-4	0.771	UTR_3_PRIME CG32032
2R	12832291	2R_12832291_INS [dm3] 2R_16944786_INS [dm6]	A	ACCATA	2.226e^-4	0.771	UTR_3_PRIME Pkc53E UPSTREAM CG15614
X	21526586	X_21526586_SNP [dm3] X_21655559_SNP [dm6]	G	C	2.231e^-4	0.771	INTERGENIC	transposable element FlyBase
X	20860460	X_20860460_INS [dm3] X_20989433_INS [dm6]	T	TTAAAGAATATATATAT...	2.234e^-4	0.771	INTERGENIC
2R	17467954	2R_17467954_SNP [dm3] 2R_21580449_SNP [dm6]	T	C	2.234e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17490047	3R_17490047_SNP [dm3] 3R_21664325_SNP [dm6]	A	G	2.236e^-4	0.771	UPSTREAM CG15497 INTERGENIC
3L	9905542	3L_9905542_SNP [dm3] 3L_9912442_SNP [dm6]	G	A	2.239e^-4	0.771	INTRON CG34356
2R	13847476	2R_13847476_SNP [dm3] 2R_17959971_SNP [dm6]	T	C	2.256e^-4	0.771	INTERGENIC
3L	18679262	3L_18679262_SNP [dm3] 3L_18686162_SNP [dm6]	A	G	2.258e^-4	0.771	SYNONYMOUS_CODING Cyp12c1
2L	2076752	2L_2076752_SNP [dm3] 2L_2076752_SNP [dm6]	C	T	2.259e^-4	0.771	INTRON dpr3
X	21462430	X_21462430_SNP [dm3] X_21591403_SNP [dm6]	T	C	2.269e^-4	0.771	INTERGENIC
2R	2413954	2R_2413954_DEL [dm3] 2R_6526449_DEL [dm6]	ATCGTTAAAA	A	2.271e^-4	0.771	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad transposable element FlyBase
3L	14075243	3L_14075243_SNP [dm3] 3L_14082143_SNP [dm6]	T	C	2.271e^-4	0.771	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2458447	3L_2458447_SNP [dm3] 3L_2458447_SNP [dm6]	T	C	2.281e^-4	0.771	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17206482	3R_17206482_SNP [dm3] 3R_21380760_SNP [dm6]	C	T	2.281e^-4	0.771	SYNONYMOUS_CODING tin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4147610	2L_4147610_SNP [dm3] 2L_4147610_SNP [dm6]	A	C	2.287e^-4	0.771	INTERGENIC
3R	21242884	3R_21242884_DEL [dm3] 3R_25417162_DEL [dm6]	GC	G	2.289e^-4	0.771	INTRON Fur1
2L	18576230	2L_18576230_SNP [dm3] 2L_18576230_SNP [dm6]	G	A	2.291e^-4	0.771	INTRON Pde11
2L	2641071	2L_2641071_DEL [dm3] 2L_2641071_DEL [dm6]	TATAC	T	2.293e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16694836	3R_16694836_SNP [dm3] 3R_20869114_SNP [dm6]	A	C	2.295e^-4	0.771	INTERGENIC
2R	19961165	2R_19961165_SNP [dm3] 2R_24073642_SNP [dm6]	G	A	2.298e^-4	0.771	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
3L	16786829	3L_16786829_SNP [dm3] 3L_16793729_SNP [dm6]	G	T	2.299e^-4	0.771	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20356869	2L_20356869_SNP [dm3] 2L_20356869_SNP [dm6]	T	A	2.305e^-4	0.771	SPLICE_SITE_REGION RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
2R	16595562	2R_16595562_SNP [dm3] 2R_20708057_SNP [dm6]	T	C	2.305e^-4	0.771	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3314106	3L_3314106_SNP [dm3] 3L_3314106_SNP [dm6]	C	G	2.311e^-4	0.771	UPSTREAM Drsl2 & 1 other DOWNSTREAM ZnT63C INTERGENIC
2L	17583897	2L_17583897_SNP [dm3] 2L_17583897_SNP [dm6]	A	G	2.312e^-4	0.771	UPSTREAM CR45111 DOWNSTREAM CR45112 INTERGENIC
2R	9350641	2R_9350641_SNP [dm3] 2R_13463136_SNP [dm6]	G	C	2.314e^-4	0.771	INTRON arr
2L	2641066	2L_2641066_SNP [dm3] 2L_2641066_SNP [dm6]	A	G	2.324e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	19866237	3L_19866237_SNP [dm3] 3L_19873137_SNP [dm6]	A	G	2.329e^-4	0.771	INTRON CG8334
2L	11907460	2L_11907460_SNP [dm3] 2L_11907460_SNP [dm6]	G	A	2.333e^-4	0.771	INTRON Pde1c
X	19866136	X_19866136_SNP [dm3] X_19972103_SNP [dm6]	A	T	2.335e^-4	0.771	INTERGENIC
2R	11987166	2R_11987166_SNP [dm3] 2R_16099661_SNP [dm6]	A	T	2.336e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14154582	3L_14154582_SNP [dm3] 3L_14161482_SNP [dm6]	C	T	2.336e^-4	0.771	INTERGENIC	regulatory region REDfly_CRMs
2R	9724905	2R_9724905_SNP [dm3] 2R_13837400_SNP [dm6]	A	G	2.345e^-4	0.771	INTRON CG6347
2L	7467999	2L_7467999_MNP [dm3] 2L_7467999_MNP [dm6]	AAA	GTT	2.347e^-4	0.771	INTRON CG6055
3L	1291110	3L_1291110_SNP [dm3] 3L_1291110_SNP [dm6]	T	C	2.347e^-4	0.771	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13616093	2L_13616093_SNP [dm3] 2L_13616093_SNP [dm6]	A	G	2.350e^-4	0.771	INTRON kuz
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	2.355e^-4	0.771	INTRON Pkc53E
3R	4224023	3R_4224023_SNP [dm3] 3R_8398301_SNP [dm6]	G	C	2.357e^-4	0.771	INTRON CG45263
X	12632170	X_12632170_SNP [dm3] X_12738137_SNP [dm6]	G	A	2.358e^-4	0.771	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16841885	2R_16841885_SNP [dm3] 2R_20954380_SNP [dm6]	T	G	2.360e^-4	0.771	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19039960	2R_19039960_SNP [dm3] 2R_23152437_SNP [dm6]	G	A	2.362e^-4	0.771	UPSTREAM CG43207 INTERGENIC
2R	7624711	2R_7624711_SNP [dm3] 2R_11737206_SNP [dm6]	T	G	2.365e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	2737262	3L_2737262_SNP [dm3] 3L_2737262_SNP [dm6]	C	G	2.368e^-4	0.771	INTRON Mrtf
2R	11987147	2R_11987147_SNP [dm3] 2R_16099642_SNP [dm6]	G	A	2.369e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11307826	3R_11307826_SNP [dm3] 3R_15482104_SNP [dm6]	C	T	2.371e^-4	0.771	NON_SYNONYMOUS_CODING CG14870	TF binding site mE1_TFBS_chinmo
2R	7789638	2R_7789638_SNP [dm3] 2R_11902133_SNP [dm6]	G	A	2.372e^-4	0.771	DOWNSTREAM Zip48C INTRON MCPH1
2R	16838229	2R_16838229_SNP [dm3] 2R_20950724_SNP [dm6]	T	A	2.374e^-4	0.771	UTR_3_PRIME CG33704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4656914	3L_4656914_INS [dm3] 3L_4656914_INS [dm6]	C	CACATCCGCACCGCACCTT...	2.374e^-4	0.771	INTRON axo
X	12703908	X_12703908_SNP [dm3] X_12809875_SNP [dm6]	C	A	2.376e^-4	0.771	INTRON Pde9
3R	6700525	3R_6700525_SNP [dm3] 3R_10874803_SNP [dm6]	C	T	2.376e^-4	0.771	UTR_3_PRIME CG4596	TF binding site mE1_TFBS_cad
3R	19797571	3R_19797571_SNP [dm3] 3R_23971849_SNP [dm6]	G	A	2.388e^-4	0.771	INTRON CG31140
2L	18222773	2L_18222773_SNP [dm3] 2L_18222773_SNP [dm6]	T	G	2.389e^-4	0.771	INTRON CG42750
2R	19383638	2R_19383638_SNP [dm3] 2R_23496115_SNP [dm6]	A	T	2.395e^-4	0.771	INTERGENIC
2R	17738325	2R_17738325_SNP [dm3] 2R_21850820_SNP [dm6]	A	C	2.395e^-4	0.771	INTERGENIC
2L	7106046	2L_7106046_SNP [dm3] 2L_7106046_SNP [dm6]	A	G	2.396e^-4	0.771	INTRON Pvf3
2L	5570821	2L_5570821_SNP [dm3] 2L_5570821_SNP [dm6]	T	C	2.398e^-4	0.771	INTERGENIC
2L	14027634	2L_14027634_SNP [dm3] 2L_14027634_SNP [dm6]	G	C	2.405e^-4	0.771	SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7821478	3R_7821478_SNP [dm3] 3R_11995756_SNP [dm6]	G	T	2.417e^-4	0.771	NON_SYNONYMOUS_CODING Tk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17564537	2L_17564537_SNP [dm3] 2L_17564537_SNP [dm6]	T	G	2.423e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10046858	3R_10046858_SNP [dm3] 3R_14221136_SNP [dm6]	C	G	2.424e^-4	0.771	SYNONYMOUS_CODING CG33109 UPSTREAM CG31326 DOWNSTREAM Sp212
2L	5939398	2L_5939398_SNP [dm3] 2L_5939398_SNP [dm6]	A	T	2.427e^-4	0.771	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
2L	2736439	2L_2736439_SNP [dm3] 2L_2736439_SNP [dm6]	A	C	2.428e^-4	0.771	INTRON CG31689
2L	13925786	2L_13925786_SNP [dm3] 2L_13925786_SNP [dm6]	A	T	2.440e^-4	0.771	INTRON Ance-3
2L	7388591	2L_7388591_SNP [dm3] 2L_7388591_SNP [dm6]	G	T	2.441e^-4	0.771	UTR_5_PRIME gudu UPSTREAM CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8566859	3L_8566859_SNP [dm3] 3L_8573759_SNP [dm6]	G	A	2.446e^-4	0.771	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea DOWNSTREAM CG6638	TF binding site mE1_TFBS_cad
2L	2641051	2L_2641051_DEL [dm3] 2L_2641051_DEL [dm6]	AGATAC	G	2.449e^-4	0.771	INTERGENIC
2L	16126117	2L_16126117_SNP [dm3] 2L_16126117_SNP [dm6]	A	T	2.450e^-4	0.771	INTERGENIC
2L	3897837	2L_3897837_SNP [dm3] 2L_3897837_SNP [dm6]	T	G	2.451e^-4	0.771	INTRON capu
2L	20356959	2L_20356959_SNP [dm3] 2L_20356959_SNP [dm6]	A	G	2.452e^-4	0.771	SYNONYMOUS_CODING RtGEF INTRON RtGEF
3L	2838549	3L_2838549_SNP [dm3] 3L_2838549_SNP [dm6]	G	C	2.452e^-4	0.771	INTRON CG43444
3R	17543959	3R_17543959_SNP [dm3] 3R_21718237_SNP [dm6]	T	A	2.454e^-4	0.771	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	13673135	3R_13673135_SNP [dm3] 3R_17847413_SNP [dm6]	G	A	2.463e^-4	0.771	INTRON tinc
3L	8468934	3L_8468934_SNP [dm3] 3L_8475834_SNP [dm6]	T	A	2.465e^-4	0.771	NON_SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7133468	2L_7133468_SNP [dm3] 2L_7133468_SNP [dm6]	T	A	2.468e^-4	0.771	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9737481	3L_9737481_SNP [dm3] 3L_9744381_SNP [dm6]	T	A	2.471e^-4	0.771	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
2R	12829482	2R_12829482_SNP [dm3] 2R_16941977_SNP [dm6]	A	T	2.480e^-4	0.771	SYNONYMOUS_CODING Pkc53E
2R	12016564	2R_12016564_INS [dm3] 2R_16129059_INS [dm6]	C	CATCT	2.482e^-4	0.771	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14976704	2L_14976704_SNP [dm3] 2L_14976704_SNP [dm6]	A	G	2.489e^-4	0.771	SYNONYMOUS_CODING mol
X	21457138	X_21457138_SNP [dm3] X_21586111_SNP [dm6]	C	T	2.501e^-4	0.771	INTERGENIC
2R	17780680	2R_17780680_SNP [dm3] 2R_21893175_SNP [dm6]	T	G	2.506e^-4	0.771	INTRON Fili
2L	15124945	2L_15124945_SNP [dm3] 2L_15124945_SNP [dm6]	C	T	2.510e^-4	0.771	INTERGENIC
3R	14609791	3R_14609791_SNP [dm3] 3R_18784069_SNP [dm6]	G	C	2.522e^-4	0.771	INTRON CG7720
3L	5735555	3L_5735555_SNP [dm3] 3L_5742455_SNP [dm6]	C	T	2.523e^-4	0.771	UTR_3_PRIME sif INTRON sif
3L	3399756	3L_3399756_DEL [dm3] 3L_3399756_DEL [dm6]	CC	C	2.535e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4183395	2R_4183395_SNP [dm3] 2R_8295890_SNP [dm6]	T	A	2.543e^-4	0.771	INTERGENIC
3L	2204047	3L_2204047_SNP [dm3] 3L_2204047_SNP [dm6]	T	C	2.543e^-4	0.771	INTERGENIC
2R	13302944	2R_13302944_SNP [dm3] 2R_17415439_SNP [dm6]	C	T	2.545e^-4	0.771	NON_SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo
3R	18094405	3R_18094405_SNP [dm3] 3R_22268683_SNP [dm6]	A	G	2.555e^-4	0.771	INTRON SKIP
2R	17427353	2R_17427353_SNP [dm3] 2R_21539848_SNP [dm6]	A	G	2.561e^-4	0.771	SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr
2L	9092108	2L_9092108_SNP [dm3] 2L_9092108_SNP [dm6]	T	C	2.565e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_sens
2L	16395835	2L_16395835_SNP [dm3] 2L_16395835_SNP [dm6]	T	A	2.570e^-4	0.771	INTERGENIC
2L	14999145	2L_14999145_SNP [dm3] 2L_14999145_SNP [dm6]	C	A	2.570e^-4	0.771	INTERGENIC
2L	17738550	2L_17738550_SNP [dm3] 2L_17738550_SNP [dm6]	T	C	2.579e^-4	0.771	SYNONYMOUS_CODING CadN	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19084925	3R_19084925_INS [dm3] 3R_23259203_INS [dm6]	A	AAAGAACAAATAATTTTTTA...	2.594e^-4	0.771	INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	13044437	2L_13044437_SNP [dm3] 2L_13044437_SNP [dm6]	A	G	2.594e^-4	0.771	INTRON CG9932
3L	17344738	3L_17344738_SNP [dm3] 3L_17351638_SNP [dm6]	C	A	2.596e^-4	0.771	UPSTREAM CG7692 INTERGENIC
3R	4438070	3R_4438070_SNP [dm3] 3R_8612348_SNP [dm6]	C	T	2.596e^-4	0.771	INTRON 5-HT2B
2R	4296397	2R_4296397_SNP [dm3] 2R_8408892_SNP [dm6]	C	T	2.599e^-4	0.771	INTRON CG2121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19818894	3R_19818894_SNP [dm3] 3R_23993172_SNP [dm6]	T	G	2.600e^-4	0.771	UPSTREAM Rab7 & 1 other INTRON Rab7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	9147642	2L_9147642_SNP [dm3] 2L_9147642_SNP [dm6]	G	A	2.604e^-4	0.771	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4932164	2R_4932164_SNP [dm3] 2R_9044659_SNP [dm6]	A	T	2.610e^-4	0.771	UTR_5_PRIME PPO2 DOWNSTREAM CG13743	TF binding site mE1_TFBS_cad
3L	1145370	3L_1145370_SNP [dm3] 3L_1145370_SNP [dm6]	T	C	2.612e^-4	0.771	INTRON bab2
2L	15149855	2L_15149855_SNP [dm3] 2L_15149855_SNP [dm6]	T	A	2.615e^-4	0.771	INTERGENIC
X	1002083	X_1002083_INS [dm3] X_1108050_INS [dm6]	T	TT	2.617e^-4	0.771	INTRON CG3655
X	10272657	X_10272657_SNP [dm3] X_10378624_SNP [dm6]	A	G	2.618e^-4	0.771	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	10256552	2L_10256552_SNP [dm3] 2L_10256552_SNP [dm6]	C	T	2.623e^-4	0.771	UPSTREAM CG5676 INTRON Pten
3L	10876673	3L_10876673_SNP [dm3] 3L_10883573_SNP [dm6]	C	A	2.626e^-4	0.771	UTR_3_PRIME CG7949 DOWNSTREAM CG6404
2L	19260046	2L_19260046_SNP [dm3] 2L_19260046_SNP [dm6]	G	A	2.633e^-4	0.771	SYNONYMOUS_CODING CG31797	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19735564	2R_19735564_SNP [dm3] 2R_23848041_SNP [dm6]	C	G	2.634e^-4	0.771	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
2R	19608455	2R_19608455_SNP [dm3] 2R_23720932_SNP [dm6]	C	T	2.640e^-4	0.771	UPSTREAM CG18128 INTRON Sesn EXON CR45325
3L	3331520	3L_3331520_SNP [dm3] 3L_3331520_SNP [dm6]	C	T	2.643e^-4	0.771	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17456054	3L_17456054_SNP [dm3] 3L_17462954_SNP [dm6]	G	A	2.645e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10233857	3L_10233857_SNP [dm3] 3L_10240757_SNP [dm6]	A	G	2.650e^-4	0.771	DOWNSTREAM CR45403 INTERGENIC
2R	18605358	2R_18605358_SNP [dm3] 2R_22717853_SNP [dm6]	C	A	2.652e^-4	0.771	DOWNSTREAM CG30268 INTRON jbug
3L	18679656	3L_18679656_SNP [dm3] 3L_18686556_SNP [dm6]	G	T	2.659e^-4	0.771	UPSTREAM Cyp12c1 INTERGENIC
3L	11363948	3L_11363948_SNP [dm3] 3L_11370848_SNP [dm6]	G	A	2.674e^-4	0.771	INTERGENIC
2R	19255229	2R_19255229_SNP [dm3] 2R_23367706_SNP [dm6]	T	C	2.674e^-4	0.771	SYNONYMOUS_CODING Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	12632649	X_12632649_DEL [dm3] X_12738616_DEL [dm6]	ATAA	A	2.685e^-4	0.771	INTRON Smr	TF binding site BDTNP1_TFBS_dl
2L	7513835	2L_7513835_SNP [dm3] 2L_7513835_SNP [dm6]	G	A	2.690e^-4	0.771	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6939736	3R_6939736_SNP [dm3] 3R_11114014_SNP [dm6]	G	A	2.694e^-4	0.771	DOWNSTREAM CG6629 INTERGENIC
X	2489010	X_2489010_SNP [dm3] X_2594977_SNP [dm6]	A	T	2.700e^-4	0.771	INTRON egh
2L	3520738	2L_3520738_SNP [dm3] 2L_3520738_SNP [dm6]	A	G	2.703e^-4	0.771	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad
2L	11963927	2L_11963927_SNP [dm3] 2L_11963927_SNP [dm6]	A	T	2.706e^-4	0.771	INTRON CR43314
2L	18367618	2L_18367618_SNP [dm3] 2L_18367618_SNP [dm6]	G	A	2.707e^-4	0.771	INTRON Fas3
3L	9086229	3L_9086229_SNP [dm3] 3L_9093129_SNP [dm6]	G	A	2.708e^-4	0.771	UTR_5_PRIME CG32032 DOWNSTREAM Tequila
X	12748547	X_12748547_SNP [dm3] X_12854514_SNP [dm6]	T	C	2.710e^-4	0.771	INTRON Pde9
2L	1793535	2L_1793535_SNP [dm3] 2L_1793535_SNP [dm6]	A	G	2.715e^-4	0.771	UPSTREAM Gr22b DOWNSTREAM Gr22a INTERGENIC
2L	19228357	2L_19228357_SNP [dm3] 2L_19228357_SNP [dm6]	G	A	2.718e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sbb
2R	4658941	2R_4658941_SNP [dm3] 2R_8771436_SNP [dm6]	A	T	2.719e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21462421	X_21462421_SNP [dm3] X_21591394_SNP [dm6]	C	T	2.721e^-4	0.771	INTERGENIC
3R	24916691	3R_24916691_SNP [dm3] 3R_29090969_SNP [dm6]	G	A	2.725e^-4	0.771	INTRON CG11873
2L	20846421	2L_20846421_SNP [dm3] 2L_20846421_SNP [dm6]	G	A	2.729e^-4	0.771	INTRON CG31676
3R	14654784	3R_14654784_SNP [dm3] 3R_18829062_SNP [dm6]	G	C	2.737e^-4	0.771	INTRON CG18208
3R	17543897	3R_17543897_SNP [dm3] 3R_21718175_SNP [dm6]	A	T	2.750e^-4	0.771	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	11597470	3L_11597470_SNP [dm3] 3L_11604370_SNP [dm6]	A	G	2.758e^-4	0.771	SYNONYMOUS_CODING CG7368	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9833126	2L_9833126_SNP [dm3] 2L_9833126_SNP [dm6]	G	A	2.771e^-4	0.771	INTRON nAChRalpha6
3L	10666124	3L_10666124_SNP [dm3] 3L_10673024_SNP [dm6]	C	G	2.775e^-4	0.771	INTRON simj	TF binding site BDTNP1_TFBS_dl
X	21458699	X_21458699_SNP [dm3] X_21587672_SNP [dm6]	C	T	2.781e^-4	0.771	INTERGENIC	transposable element FlyBase
X	12634425	X_12634425_SNP [dm3] X_12740392_SNP [dm6]	T	C	2.785e^-4	0.771	INTRON Smr
2L	17780595	2L_17780595_SNP [dm3] 2L_17780595_SNP [dm6]	C	A	2.788e^-4	0.771	INTERGENIC
2L	16881992	2L_16881992_SNP [dm3] 2L_16881992_SNP [dm6]	T	A	2.791e^-4	0.771	INTRON CG31743 & 1 other
3L	22870063	3L_22870063_SNP [dm3] 3L_22876963_SNP [dm6]	C	A	2.794e^-4	0.771	NON_SYNONYMOUS_CODING Chro	TF binding site mE1_TFBS_sens
2L	8884163	2L_8884163_SNP [dm3] 2L_8884163_SNP [dm6]	T	C	2.798e^-4	0.771	INTERGENIC
2L	7019826	2L_7019826_SNP [dm3] 2L_7019826_SNP [dm6]	T	C	2.799e^-4	0.771	INTRON ade3	TF binding site mE1_TFBS_HSA
2L	9381032	2L_9381032_SNP [dm3] 2L_9381032_SNP [dm6]	G	A	2.801e^-4	0.771	NON_SYNONYMOUS_CODING Shawl
2R	6084196	2R_6084196_SNP [dm3] 2R_10196691_SNP [dm6]	A	T	2.814e^-4	0.771	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7274841	2L_7274841_SNP [dm3] 2L_7274841_SNP [dm6]	G	T	2.816e^-4	0.771	INTRON Wnt4
3R	786687	3R_786687_SNP [dm3] 3R_4960965_SNP [dm6]	C	T	2.819e^-4	0.771	UTR_5_PRIME CG2016	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2082144	3R_2082144_SNP [dm3] 3R_6256422_SNP [dm6]	T	G	2.823e^-4	0.771	UTR_3_PRIME Osi8
3L	3714614	3L_3714614_SNP [dm3] 3L_3714614_SNP [dm6]	T	C	2.833e^-4	0.771	UTR_3_PRIME CG43089 DOWNSTREAM CG32264 & 1 other
2L	7459433	2L_7459433_DEL [dm3] 2L_7459433_DEL [dm6]	TGGTCA	T	2.835e^-4	0.771	UPSTREAM Gr28b INTRON Gr28b
2L	13045587	2L_13045587_SNP [dm3] 2L_13045587_SNP [dm6]	C	T	2.839e^-4	0.771	INTRON CG9932
3L	7800376	3L_7800376_SNP [dm3] 3L_7807276_SNP [dm6]	T	A	2.842e^-4	0.771	INTRON CG32369
2L	7513832	2L_7513832_SNP [dm3] 2L_7513832_SNP [dm6]	A	T	2.849e^-4	0.771	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8193081	3L_8193081_INS [dm3] 3L_8199981_INS [dm6]	C	CATTTTCTCC	2.850e^-4	0.771	DOWNSTREAM CG8005 INTERGENIC
3R	25049029	3R_25049029_SNP [dm3] 3R_29223307_SNP [dm6]	C	A	2.854e^-4	0.771	SYNONYMOUS_CODING CG1458 UPSTREAM Brd8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	16723850	2R_16723850_INS [dm3] 2R_20836345_INS [dm6]	C	CTTTCTAC	2.859e^-4	0.771	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18961249	3L_18961249_SNP [dm3] 3L_18968149_SNP [dm6]	G	T	2.860e^-4	0.771	INTERGENIC
2L	2640985	2L_2640985_SNP [dm3] 2L_2640985_SNP [dm6]	A	C	2.860e^-4	0.771	INTERGENIC
X	4842720	X_4842720_SNP [dm3] X_4948687_SNP [dm6]	A	T	2.867e^-4	0.771	INTRON Ptp4E
2R	2670022	2R_2670022_SNP [dm3] 2R_6782517_SNP [dm6]	G	A	2.871e^-4	0.771	INTRON Epac
3R	8974772	3R_8974772_SNP [dm3] 3R_13149050_SNP [dm6]	A	T	2.879e^-4	0.771	INTRON timeout & 2 others
2L	12791547	2L_12791547_SNP [dm3] 2L_12791547_SNP [dm6]	C	T	2.879e^-4	0.771	INTERGENIC
3R	11438084	3R_11438084_SNP [dm3] 3R_15612362_SNP [dm6]	C	A	2.879e^-4	0.771	INTERGENIC
2L	6945026	2L_6945026_SNP [dm3] 2L_6945026_SNP [dm6]	T	C	2.883e^-4	0.771	UTR_5_PRIME CG10158 DOWNSTREAM ihog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11979391	2R_11979391_SNP [dm3] 2R_16091886_SNP [dm6]	A	C	2.892e^-4	0.771	INTRON Dg
2L	2242356	2L_2242356_INS [dm3] 2L_2242356_INS [dm6]	A	ATCGA	2.898e^-4	0.771	UPSTREAM CG4267 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18961248	3L_18961248_SNP [dm3] 3L_18968148_SNP [dm6]	G	T	2.899e^-4	0.771	INTERGENIC
2L	18367346	2L_18367346_INS [dm3] 2L_18367346_INS [dm6]	TT	GAG	2.907e^-4	0.771	INTRON Fas3
3R	21242930	3R_21242930_SNP [dm3] 3R_25417208_SNP [dm6]	A	G	2.912e^-4	0.771	INTRON Fur1
2L	5081327	2L_5081327_SNP [dm3] 2L_5081327_SNP [dm6]	C	T	2.918e^-4	0.771	INTRON pgant5
3L	4021583	3L_4021583_SNP [dm3] 3L_4021583_SNP [dm6]	C	T	2.918e^-4	0.771	NON_SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4021609	3L_4021609_SNP [dm3] 3L_4021609_SNP [dm6]	G	T	2.918e^-4	0.771	SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7327659	2R_7327659_SNP [dm3] 2R_11440154_SNP [dm6]	T	G	2.927e^-4	0.771	INTRON CG7777
2L	18903871	2L_18903871_SNP [dm3] 2L_18903871_SNP [dm6]	G	T	2.931e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	13412626	3R_13412626_SNP [dm3] 3R_17586904_SNP [dm6]	T	A	2.932e^-4	0.771	INTERGENIC
3R	1962817	3R_1962817_SNP [dm3] 3R_6137095_SNP [dm6]	A	G	2.936e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18518898	3L_18518898_SNP [dm3] 3L_18525798_SNP [dm6]	T	A	2.944e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_run
2L	4147607	2L_4147607_SNP [dm3] 2L_4147607_SNP [dm6]	C	A	2.945e^-4	0.771	INTERGENIC
3R	19403854	3R_19403854_SNP [dm3] 3R_23578132_SNP [dm6]	T	A	2.948e^-4	0.771	INTRON beat-IV
2R	18056515	2R_18056515_SNP [dm3] 2R_22169010_SNP [dm6]	T	C	2.949e^-4	0.771	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14729462	3R_14729462_SNP [dm3] 3R_18903740_SNP [dm6]	A	G	2.962e^-4	0.771	UPSTREAM CG34284 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7526049	2L_7526049_SNP [dm3] 2L_7526049_SNP [dm6]	G	A	2.968e^-4	0.771	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	10426943	X_10426943_SNP [dm3] X_10532910_SNP [dm6]	C	T	2.978e^-4	0.771	INTRON spri
3L	15782182	3L_15782182_SNP [dm3] 3L_15789082_SNP [dm6]	C	T	3.000e^-4	0.771	INTERGENIC
2R	20238973	2R_20238973_SNP [dm3] 2R_24351450_SNP [dm6]	C	T	3.002e^-4	0.771	UPSTREAM CG44812 DOWNSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15980170	2L_15980170_SNP [dm3] 2L_15980170_SNP [dm6]	C	G	3.005e^-4	0.771	UTR_3_PRIME CG10839 INTRON CG10839
X	15557467	X_15557467_SNP [dm3] X_15663434_SNP [dm6]	G	A	3.008e^-4	0.771	DOWNSTREAM CG8119 EXON CR43299
2R	9329230	2R_9329230_SNP [dm3] 2R_13441725_SNP [dm6]	G	C	3.016e^-4	0.771	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2R	17427365	2R_17427365_SNP [dm3] 2R_21539860_SNP [dm6]	T	G	3.018e^-4	0.771	SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr
2R	11987153	2R_11987153_SNP [dm3] 2R_16099648_SNP [dm6]	T	A	3.021e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9665905	3R_9665905_SNP [dm3] 3R_13840183_SNP [dm6]	A	G	3.023e^-4	0.771	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	3.023e^-4	0.771	INTERGENIC
2R	2667218	2R_2667218_SNP [dm3] 2R_6779713_SNP [dm6]	G	T	3.026e^-4	0.771	DOWNSTREAM Cyp6a2 INTRON Epac
2L	5714171	2L_5714171_SNP [dm3] 2L_5714171_SNP [dm6]	G	A	3.040e^-4	0.771	DOWNSTREAM CG7236 INTERGENIC
2L	18772213	2L_18772213_SNP [dm3] 2L_18772213_SNP [dm6]	A	T	3.044e^-4	0.771	UPSTREAM ham INTRON ham
3R	21373231	3R_21373231_SNP [dm3] 3R_25547509_SNP [dm6]	T	C	3.045e^-4	0.771	INTRON msi
2R	17637392	2R_17637392_SNP [dm3] 2R_21749887_SNP [dm6]	A	C	3.048e^-4	0.771	INTERGENIC
2R	9054758	2R_9054758_SNP [dm3] 2R_13167253_SNP [dm6]	G	A	3.049e^-4	0.771	INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	882656	2L_882656_SNP [dm3] 2L_882656_SNP [dm6]	T	C	3.052e^-4	0.771	SPLICE_SITE_REGION CG15824 INTRON CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	13328649	X_13328649_INS [dm3] X_13434616_INS [dm6]	A	AC	3.053e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19255274	2R_19255274_SNP [dm3] 2R_23367751_SNP [dm6]	C	T	3.058e^-4	0.771	SYNONYMOUS_CODING Ice1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	20334426	2L_20334426_SNP [dm3] 2L_20334426_SNP [dm6]	G	T	3.063e^-4	0.771	INTRON spir
3L	7029655	3L_7029655_SNP [dm3] 3L_7036555_SNP [dm6]	T	A	3.070e^-4	0.771	INTRON Mp
2R	18605343	2R_18605343_SNP [dm3] 2R_22717838_SNP [dm6]	T	C	3.072e^-4	0.771	DOWNSTREAM CG30268 INTRON jbug
3L	10930349	3L_10930349_SNP [dm3] 3L_10937249_SNP [dm6]	T	C	3.077e^-4	0.771	INTERGENIC
2L	9017099	2L_9017099_SNP [dm3] 2L_9017099_SNP [dm6]	A	T	3.079e^-4	0.771	INTERGENIC
3R	14609733	3R_14609733_SNP [dm3] 3R_18784011_SNP [dm6]	C	T	3.088e^-4	0.771	INTRON CG7720
3L	10315368	3L_10315368_SNP [dm3] 3L_10322268_SNP [dm6]	C	T	3.092e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14729464	3R_14729464_SNP [dm3] 3R_18903742_SNP [dm6]	C	A	3.092e^-4	0.771	UPSTREAM CG34284 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10272651	X_10272651_SNP [dm3] X_10378618_SNP [dm6]	A	G	3.099e^-4	0.771	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
X	11550340	X_11550340_SNP [dm3] X_11656307_SNP [dm6]	A	G	3.100e^-4	0.771	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2L	5395767	2L_5395767_DEL [dm3] 2L_5395767_DEL [dm6]	CC	C	3.101e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10826217	2L_10826217_SNP [dm3] 2L_10826217_SNP [dm6]	G	A	3.121e^-4	0.771	INTRON Nos
X	21458614	X_21458614_SNP [dm3] X_21587587_SNP [dm6]	G	A	3.121e^-4	0.771	INTERGENIC	transposable element FlyBase
X	21459686	X_21459686_SNP [dm3] X_21588659_SNP [dm6]	G	T	3.123e^-4	0.771	INTERGENIC
3R	17552545	3R_17552545_SNP [dm3] 3R_21726823_SNP [dm6]	G	A	3.125e^-4	0.771	INTERGENIC
2L	7106036	2L_7106036_SNP [dm3] 2L_7106036_SNP [dm6]	G	T	3.129e^-4	0.771	INTRON Pvf3
2L	20700097	2L_20700097_SNP [dm3] 2L_20700097_SNP [dm6]	A	T	3.139e^-4	0.771	INTRON Hr38
X	16038161	X_16038161_SNP [dm3] X_16144128_SNP [dm6]	G	T	3.144e^-4	0.771	INTRON disco-r
2L	1790585	2L_1790585_SNP [dm3] 2L_1790585_SNP [dm6]	A	G	3.149e^-4	0.771	UPSTREAM Gr22d DOWNSTREAM Gr22c INTERGENIC
3R	15723082	3R_15723082_SNP [dm3] 3R_19897360_SNP [dm6]	G	A	3.155e^-4	0.771	DOWNSTREAM CG4538 INTRON CG4733	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7732218	2R_7732218_SNP [dm3] 2R_11844713_SNP [dm6]	G	T	3.156e^-4	0.771	UPSTREAM S2P & 1 other INTRON CG43190 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	7732220	2R_7732220_SNP [dm3] 2R_11844715_SNP [dm6]	G	A	3.156e^-4	0.771	UPSTREAM S2P & 1 other INTRON CG43190 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	4477863	2R_4477863_DEL [dm3] 2R_8590358_DEL [dm6]	TGCT	T	3.160e^-4	0.771	UPSTREAM CG14752 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6533778	2R_6533778_SNP [dm3] 2R_10646273_SNP [dm6]	C	G	3.171e^-4	0.771	NON_SYNONYMOUS_CODING Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10085481	3L_10085481_SNP [dm3] 3L_10092381_SNP [dm6]	T	C	3.172e^-4	0.771	UPSTREAM CG32053 DOWNSTREAM CG32054 INTRON dpr6	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15556014	2R_15556014_SNP [dm3] 2R_19668509_SNP [dm6]	C	A	3.180e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D
2R	9347054	2R_9347054_SNP [dm3] 2R_13459549_SNP [dm6]	T	A	3.183e^-4	0.771	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15853911	3L_15853911_SNP [dm3] 3L_15860811_SNP [dm6]	G	C	3.183e^-4	0.771	INTRON pHCl
2L	3864135	2L_3864135_SNP [dm3] 2L_3864135_SNP [dm6]	C	A	3.188e^-4	0.771	SYNONYMOUS_CODING CG3964	TF binding site BDTNP1_TFBS_sna
2L	8665801	2L_8665801_SNP [dm3] 2L_8665801_SNP [dm6]	T	C	3.193e^-4	0.771	INTRON Sema-1a
2R	17882103	2R_17882103_SNP [dm3] 2R_21994598_SNP [dm6]	T	G	3.195e^-4	0.771	INTRON CG34370
3R	1958657	3R_1958657_SNP [dm3] 3R_6132935_SNP [dm6]	C	T	3.202e^-4	0.771	INTERGENIC
2R	10386558	2R_10386558_SNP [dm3] 2R_14499053_SNP [dm6]	A	G	3.214e^-4	0.771	SYNONYMOUS_CODING Cpsf160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15556103	2R_15556103_SNP [dm3] 2R_19668598_SNP [dm6]	T	A	3.216e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	5970349	2L_5970349_SNP [dm3] 2L_5970349_SNP [dm6]	T	C	3.221e^-4	0.771	SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	881726	2L_881726_SNP [dm3] 2L_881726_SNP [dm6]	T	C	3.227e^-4	0.771	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
X	4596324	X_4596324_SNP [dm3] X_4702291_SNP [dm6]	A	C	3.232e^-4	0.771	UTR_5_PRIME l_1_G0334 UPSTREAM l_1_G0334 DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Trl
2L	1923356	2L_1923356_SNP [dm3] 2L_1923356_SNP [dm6]	G	A	3.248e^-4	0.771	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11987151	2R_11987151_SNP [dm3] 2R_16099646_SNP [dm6]	T	G	3.249e^-4	0.771	DOWNSTREAM mRpL34 INTRON CG8414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17126933	X_17126933_SNP [dm3] X_17232900_SNP [dm6]	A	C	3.256e^-4	0.771	UPSTREAM f INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15160139	2L_15160139_SNP [dm3] 2L_15160139_SNP [dm6]	A	G	3.257e^-4	0.771	UPSTREAM CR44770 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	19621433	2R_19621433_SNP [dm3] 2R_23733910_SNP [dm6]	A	C	3.259e^-4	0.771	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 2 others
3L	1134966	3L_1134966_SNP [dm3] 3L_1134966_SNP [dm6]	G	A	3.263e^-4	0.771	INTERGENIC	regulatory region REDfly_CRMs
2L	9091760	2L_9091760_SNP [dm3] 2L_9091760_SNP [dm6]	A	C	3.264e^-4	0.771	INTERGENIC
2L	17375814	2L_17375814_SNP [dm3] 2L_17375814_SNP [dm6]	C	T	3.282e^-4	0.771	INTRON Lrch	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7457940	2L_7457940_SNP [dm3] 2L_7457940_SNP [dm6]	T	A	3.289e^-4	0.771	UPSTREAM Gr28b INTRON Gr28b
2L	19596618	2L_19596618_SNP [dm3] 2L_19596618_SNP [dm6]	C	T	3.291e^-4	0.771	INTRON Lar
2L	13989392	2L_13989392_SNP [dm3] 2L_13989392_SNP [dm6]	C	G	3.309e^-4	0.771	INTRON rk
X	11903423	X_11903423_SNP [dm3] X_12009390_SNP [dm6]	C	T	3.313e^-4	0.771	SYNONYMOUS_CODING CG1806 DOWNSTREAM CG1492
3R	15997833	3R_15997833_INS [dm3] 3R_20172111_INS [dm6]	G	GGCAGTAGATGGAAAG...	3.314e^-4	0.771	INTRON CG5023
2L	18346259	2L_18346259_SNP [dm3] 2L_18346259_SNP [dm6]	A	G	3.317e^-4	0.771	INTRON Fas3
3R	25050310	3R_25050310_SNP [dm3] 3R_29224588_SNP [dm6]	C	T	3.317e^-4	0.771	NON_SYNONYMOUS_CODING Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9596713	2R_9596713_SNP [dm3] 2R_13709208_SNP [dm6]	G	T	3.319e^-4	0.771	INTRON fas
X	18287165	X_18287165_SNP [dm3] X_18393132_SNP [dm6]	G	T	3.321e^-4	0.771	INTRON CG32549
X	12579839	X_12579839_SNP [dm3] X_12685806_SNP [dm6]	T	A	3.328e^-4	0.771	UTR_3_PRIME Smr DOWNSTREAM Smr
2R	6331085	2R_6331085_SNP [dm3] 2R_10443580_SNP [dm6]	T	C	3.330e^-4	0.771	UPSTREAM Galphao INTRON Galphao
2R	15556146	2R_15556146_SNP [dm3] 2R_19668641_SNP [dm6]	G	T	3.333e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18212158	3R_18212158_SNP [dm3] 3R_22386436_SNP [dm6]	T	C	3.347e^-4	0.771	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
2L	7564652	2L_7564652_SNP [dm3] 2L_7564652_SNP [dm6]	C	G	3.350e^-4	0.771	INTRON RapGAP1
2L	1923364	2L_1923364_SNP [dm3] 2L_1923364_SNP [dm6]	A	T	3.358e^-4	0.771	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13260708	X_13260708_SNP [dm3] X_13366675_SNP [dm6]	T	C	3.359e^-4	0.771	UTR_3_PRIME Syt12
2R	7119002	2R_7119002_SNP [dm3] 2R_11231497_SNP [dm6]	G	C	3.370e^-4	0.771	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2309944	2L_2309944_SNP [dm3] 2L_2309944_SNP [dm6]	A	T	3.376e^-4	0.771	INTRON CG9967
3L	14768317	3L_14768317_SNP [dm3] 3L_14775217_SNP [dm6]	G	A	3.377e^-4	0.771	SYNONYMOUS_CODING mop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	2640789	2L_2640789_SNP [dm3] 2L_2640789_SNP [dm6]	A	C	3.378e^-4	0.771	INTERGENIC
3R	1958433	3R_1958433_SNP [dm3] 3R_6132711_SNP [dm6]	G	A	3.379e^-4	0.771	INTERGENIC
2R	12834845	2R_12834845_DEL [dm3] 2R_16947340_DEL [dm6]	CATCATT	C	3.380e^-4	0.771	DOWNSTREAM Vha16-4 & 2 others
X	12632141	X_12632141_SNP [dm3] X_12738108_SNP [dm6]	A	C	3.407e^-4	0.771	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13233457	3R_13233457_SNP [dm3] 3R_17407735_SNP [dm6]	T	C	3.409e^-4	0.771	UPSTREAM CG17283 DOWNSTREAM CG42798 INTERGENIC
2R	3921320	2R_3921320_SNP [dm3] 2R_8033815_SNP [dm6]	G	T	3.410e^-4	0.771	INTRON Optix
2R	6533836	2R_6533836_SNP [dm3] 2R_10646331_SNP [dm6]	T	C	3.413e^-4	0.771	SYNONYMOUS_CODING Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17253456	X_17253456_SNP [dm3] X_17359423_SNP [dm6]	T	A	3.432e^-4	0.771	INTERGENIC
2L	7466125	2L_7466125_SNP [dm3] 2L_7466125_SNP [dm6]	T	C	3.435e^-4	0.771	UPSTREAM CG6055 INTERGENIC
2R	6533640	2R_6533640_SNP [dm3] 2R_10646135_SNP [dm6]	T	A	3.436e^-4	0.771	NON_SYNONYMOUS_CODING Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4660000	2R_4660000_SNP [dm3] 2R_8772495_SNP [dm6]	A	T	3.439e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16692010	2R_16692010_DEL [dm3] 2R_20804505_DEL [dm6]	TTC	T	3.440e^-4	0.771	INTERGENIC
X	6152746	X_6152746_SNP [dm3] X_6258713_SNP [dm6]	G	A	3.441e^-4	0.771	SYNONYMOUS_CODING schlank	TF binding site mE1_TFBS_sens
X	6149788	X_6149788_SNP [dm3] X_6255755_SNP [dm6]	C	T	3.441e^-4	0.771	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20702247	2L_20702247_SNP [dm3] 2L_20702247_SNP [dm6]	G	T	3.449e^-4	0.771	INTRON Hr38
2L	3432605	2L_3432605_SNP [dm3] 2L_3432605_SNP [dm6]	T	A	3.453e^-4	0.771	INTERGENIC
2R	12836412	2R_12836412_SNP [dm3] 2R_16948907_SNP [dm6]	C	T	3.455e^-4	0.771	NON_SYNONYMOUS_CODING mute UPSTREAM Vha16-4
3R	3161520	3R_3161520_SNP [dm3] 3R_7335798_SNP [dm6]	C	T	3.457e^-4	0.771	INTERGENIC
2R	4400793	2R_4400793_SNP [dm3] 2R_8513288_SNP [dm6]	G	A	3.470e^-4	0.771	INTRON mtt
3R	4035377	3R_4035377_SNP [dm3] 3R_8209655_SNP [dm6]	A	G	3.470e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	2640891	2L_2640891_SNP [dm3] 2L_2640891_SNP [dm6]	T	C	3.475e^-4	0.771	INTERGENIC
3L	8705055	3L_8705055_SNP [dm3] 3L_8711955_SNP [dm6]	G	A	3.480e^-4	0.771	INTERGENIC	regulatory region REDfly_CRMs
3R	1923972	3R_1923972_SNP [dm3] 3R_6098250_SNP [dm6]	C	T	3.482e^-4	0.771	INTRON Gasp
3R	25283650	3R_25283650_DEL [dm3] 3R_29457928_DEL [dm6]	CG	C	3.489e^-4	0.771	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	16682532	X_16682532_SNP [dm3] X_16788499_SNP [dm6]	C	A	3.493e^-4	0.771	DOWNSTREAM Rrp45 INTRON Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	15555950	2R_15555950_SNP [dm3] 2R_19668445_SNP [dm6]	T	G	3.493e^-4	0.771	UTR_5_PRIME hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	19084927	3R_19084927_SNP [dm3] 3R_23259205_SNP [dm6]	C	A	3.496e^-4	0.771	INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4121289	2L_4121289_SNP [dm3] 2L_4121289_SNP [dm6]	C	A	3.500e^-4	0.771	SYNONYMOUS_CODING Sr-CIII UPSTREAM Sr-CI
X	16682529	X_16682529_INS [dm3] X_16788496_INS [dm6]	T	CA	3.502e^-4	0.771	DOWNSTREAM Rrp45 INTRON Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	6194457	2R_6194457_SNP [dm3] 2R_10306952_SNP [dm6]	T	C	3.505e^-4	0.771	UTR_3_PRIME CAP DOWNSTREAM JhI-1 & 1 other
X	18287176	X_18287176_SNP [dm3] X_18393143_SNP [dm6]	C	T	3.505e^-4	0.771	INTRON CG32549
2R	12221962	2R_12221962_SNP [dm3] 2R_16334457_SNP [dm6]	T	C	3.505e^-4	0.771	UPSTREAM Vha44 INTRON Vha44
2L	16615307	2L_16615307_SNP [dm3] 2L_16615307_SNP [dm6]	T	A	3.508e^-4	0.771	INTRON CG42389
2L	14890979	2L_14890979_SNP [dm3] 2L_14890979_SNP [dm6]	C	T	3.513e^-4	0.771	INTERGENIC
2L	7133482	2L_7133482_SNP [dm3] 2L_7133482_SNP [dm6]	A	C	3.514e^-4	0.771	START_GAINED Pvf3 UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10417462	2L_10417462_SNP [dm3] 2L_10417462_SNP [dm6]	A	C	3.515e^-4	0.771	SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3395059	3L_3395059_SNP [dm3] 3L_3395059_SNP [dm6]	G	T	3.515e^-4	0.771	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12167612	2L_12167612_SNP [dm3] 2L_12167612_SNP [dm6]	T	A	3.519e^-4	0.771	DOWNSTREAM ZnT33D INTRON CG31760
3L	10477318	3L_10477318_SNP [dm3] 3L_10484218_SNP [dm6]	T	C	3.520e^-4	0.771	INTRON A2bp1
2R	9531292	2R_9531292_SNP [dm3] 2R_13643787_SNP [dm6]	C	A	3.530e^-4	0.771	UTR_5_PRIME fas INTRON fas
3R	14186230	3R_14186230_SNP [dm3] 3R_18360508_SNP [dm6]	C	G	3.531e^-4	0.771	UPSTREAM CR45634 INTRON CG15803	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5936348	2L_5936348_SNP [dm3] 2L_5936348_SNP [dm6]	C	T	3.535e^-4	0.771	SYNONYMOUS_CODING dsf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17483717	3R_17483717_SNP [dm3] 3R_21657995_SNP [dm6]	T	C	3.537e^-4	0.771	INTRON E2f
2R	17758388	2R_17758388_SNP [dm3] 2R_21870883_SNP [dm6]	A	T	3.550e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11531155	3R_11531155_INS [dm3] 3R_15705433_INS [dm6]	G	GATGCCCAAG	3.554e^-4	0.771	INTRON CG5404
3L	8467301	3L_8467301_SNP [dm3] 3L_8474201_SNP [dm6]	G	A	3.562e^-4	0.771	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19596658	2L_19596658_SNP [dm3] 2L_19596658_SNP [dm6]	A	T	3.567e^-4	0.771	INTRON Lar
2L	17431626	2L_17431626_SNP [dm3] 2L_17431626_SNP [dm6]	C	A	3.568e^-4	0.771	INTRON Dif
2R	15556147	2R_15556147_SNP [dm3] 2R_19668642_SNP [dm6]	A	T	3.575e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	19273901	3L_19273901_SNP [dm3] 3L_19280801_SNP [dm6]	G	T	3.582e^-4	0.771	UPSTREAM CG14089 DOWNSTREAM CG14086 & 1 other INTERGENIC
2L	18240291	2L_18240291_SNP [dm3] 2L_18240291_SNP [dm6]	C	A	3.585e^-4	0.771	INTRON CG42750
2R	19600037	2R_19600037_SNP [dm3] 2R_23712514_SNP [dm6]	T	A	3.588e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	20569292	2L_20569292_SNP [dm3] 2L_20569292_SNP [dm6]	T	C	3.590e^-4	0.771	INTRON CR45347
3L	18840359	3L_18840359_SNP [dm3] 3L_18847259_SNP [dm6]	A	G	3.600e^-4	0.771	UPSTREAM Indy INTERGENIC
2R	16723798	2R_16723798_SNP [dm3] 2R_20836293_SNP [dm6]	T	C	3.602e^-4	0.771	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16939971	2L_16939971_SNP [dm3] 2L_16939971_SNP [dm6]	C	A	3.604e^-4	0.771	INTERGENIC
2L	19596621	2L_19596621_SNP [dm3] 2L_19596621_SNP [dm6]	A	T	3.610e^-4	0.771	INTRON Lar
2R	6772402	2R_6772402_SNP [dm3] 2R_10884897_SNP [dm6]	G	T	3.610e^-4	0.771	UTR_3_PRIME CG18003 UPSTREAM CG18004 & 1 other
2R	6772404	2R_6772404_DEL [dm3] 2R_10884899_DEL [dm6]	TAGATAGATAA...	CT	3.610e^-4	0.771	UTR_3_PRIME CG18003 UPSTREAM CG18004 & 1 other
2L	9535697	2L_9535697_SNP [dm3] 2L_9535697_SNP [dm6]	A	G	3.615e^-4	0.771	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17253451	X_17253451_SNP [dm3] X_17359418_SNP [dm6]	T	A	3.626e^-4	0.771	INTERGENIC
2R	6890235	2R_6890235_SNP [dm3] 2R_11002730_SNP [dm6]	A	C	3.628e^-4	0.771	INTRON luna
2R	7732271	2R_7732271_SNP [dm3] 2R_11844766_SNP [dm6]	C	A	3.632e^-4	0.771	SYNONYMOUS_CODING CG43190 UPSTREAM S2P & 1 other INTRON CR44304	TF binding site BDTNP1_TFBS_dl
2L	2601370	2L_2601370_SNP [dm3] 2L_2601370_SNP [dm6]	A	G	3.636e^-4	0.771	EXON CR44789
3L	1145287	3L_1145287_DEL [dm3] 3L_1145287_DEL [dm6]	TGTTACTACTCCGCAGCTTT...	T	3.647e^-4	0.771	INTRON bab2
3L	5771733	3L_5771733_SNP [dm3] 3L_5778633_SNP [dm6]	C	T	3.649e^-4	0.771	SYNONYMOUS_CODING Myt1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1290322	3L_1290322_SNP [dm3] 3L_1290322_SNP [dm6]	A	G	3.650e^-4	0.771	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10310321	3L_10310321_SNP [dm3] 3L_10317221_SNP [dm6]	A	T	3.652e^-4	0.771	INTERGENIC
3L	4155017	3L_4155017_SNP [dm3] 3L_4155017_SNP [dm6]	T	G	3.653e^-4	0.771	INTRON nab	TF binding site mE1_TFBS_cad
3R	17992792	3R_17992792_SNP [dm3] 3R_22167070_SNP [dm6]	A	G	3.662e^-4	0.771	INTRON SKIP
2R	15556169	2R_15556169_INS [dm3] 2R_19668664_INS [dm6]	A	AA	3.662e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	1836896	2L_1836896_SNP [dm3] 2L_1836896_SNP [dm6]	C	T	3.664e^-4	0.771	INTRON wry
X	5966935	X_5966935_SNP [dm3] X_6072902_SNP [dm6]	A	C	3.666e^-4	0.771	UTR_5_PRIME Tsp5D INTRON Tsp5D	TF binding site mE1_TFBS_HSA
X	19866153	X_19866153_SNP [dm3] X_19972120_SNP [dm6]	T	A	3.671e^-4	0.771	INTERGENIC
2R	18606069	2R_18606069_SNP [dm3] 2R_22718564_SNP [dm6]	A	G	3.671e^-4	0.771	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9449624	2L_9449624_MNP [dm3] 2L_9449624_MNP [dm6]	AGT	GTG	3.673e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9449630	2L_9449630_SNP [dm3] 2L_9449630_SNP [dm6]	A	G	3.673e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3139906	3R_3139906_SNP [dm3] 3R_7314184_SNP [dm6]	C	A	3.675e^-4	0.771	INTERGENIC
3L	9087863	3L_9087863_SNP [dm3] 3L_9094763_SNP [dm6]	G	A	3.677e^-4	0.771	UTR_3_PRIME CG32032
3L	3287330	3L_3287330_SNP [dm3] 3L_3287330_SNP [dm6]	G	A	3.684e^-4	0.771	SYNONYMOUS_CODING CG12017	TF binding site mE1_TFBS_cad
2L	8010402	2L_8010402_SNP [dm3] 2L_8010402_SNP [dm6]	T	C	3.684e^-4	0.771	UPSTREAM CG12560 INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9566338	2R_9566338_SNP [dm3] 2R_13678833_SNP [dm6]	C	T	3.689e^-4	0.771	INTRON fas
2R	6183764	2R_6183764_SNP [dm3] 2R_10296259_SNP [dm6]	T	C	3.690e^-4	0.771	INTRON CAP
3R	8039702	3R_8039702_SNP [dm3] 3R_12213980_SNP [dm6]	T	C	3.693e^-4	0.771	UTR_3_PRIME CG4848 UPSTREAM CG14742
2L	17803626	2L_17803626_SNP [dm3] 2L_17803626_SNP [dm6]	T	C	3.701e^-4	0.771	INTRON CadN2
2R	19426447	2R_19426447_SNP [dm3] 2R_23538924_SNP [dm6]	A	C	3.701e^-4	0.771	UPSTREAM bw INTRON ppk3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11055569	2R_11055569_SNP [dm3] 2R_15168064_SNP [dm6]	G	A	3.705e^-4	0.771	INTRON igl
3R	16280168	3R_16280168_SNP [dm3] 3R_20454446_SNP [dm6]	A	T	3.716e^-4	0.771	INTRON Gfrl
2R	9724778	2R_9724778_SNP [dm3] 2R_13837273_SNP [dm6]	C	A	3.721e^-4	0.771	INTRON CG6347
3L	16447045	3L_16447045_SNP [dm3] 3L_16453945_SNP [dm6]	A	G	3.733e^-4	0.771	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12791167	2L_12791167_SNP [dm3] 2L_12791167_SNP [dm6]	T	G	3.733e^-4	0.771	INTERGENIC
3R	26155788	3R_26155788_SNP [dm3] 3R_30330066_SNP [dm6]	A	G	3.738e^-4	0.771	INTRON hdc
2L	19596633	2L_19596633_SNP [dm3] 2L_19596633_SNP [dm6]	C	T	3.740e^-4	0.771	INTRON Lar
2L	16129539	2L_16129539_SNP [dm3] 2L_16129539_SNP [dm6]	T	A	3.740e^-4	0.771	INTERGENIC
3R	21454015	3R_21454015_SNP [dm3] 3R_25628293_SNP [dm6]	T	C	3.747e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17458354	3L_17458354_SNP [dm3] 3L_17465254_SNP [dm6]	T	G	3.752e^-4	0.771	UPSTREAM CG7603 INTERGENIC
3R	4389976	3R_4389976_SNP [dm3] 3R_8564254_SNP [dm6]	T	G	3.760e^-4	0.771	SPLICE_SITE_REGION Cenp-C UTR_5_PRIME Cenp-C UPSTREAM CR44291 DOWNSTREAM CG31460	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1609605	2R_1609605_SNP [dm3] 2R_5722100_SNP [dm6]	T	C	3.762e^-4	0.771	INTRON ap
X	17206178	X_17206178_SNP [dm3] X_17312145_SNP [dm6]	T	C	3.767e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21458693	X_21458693_SNP [dm3] X_21587666_SNP [dm6]	G	T	3.767e^-4	0.771	INTERGENIC	transposable element FlyBase
2R	16088540	2R_16088540_SNP [dm3] 2R_20201035_SNP [dm6]	A	G	3.771e^-4	0.771	INTERGENIC
2R	16992225	2R_16992225_SNP [dm3] 2R_21104720_SNP [dm6]	A	G	3.779e^-4	0.771	INTRON ktub
2L	20328184	2L_20328184_SNP [dm3] 2L_20328184_SNP [dm6]	A	G	3.781e^-4	0.771	INTRON spir	TF binding site mE1_TFBS_inv
2R	7130199	2R_7130199_SNP [dm3] 2R_11242694_SNP [dm6]	G	A	3.786e^-4	0.771	UPSTREAM Listericin INTERGENIC
2L	18371732	2L_18371732_SNP [dm3] 2L_18371732_SNP [dm6]	T	C	3.798e^-4	0.771	INTRON Fas3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12175730	3L_12175730_SNP [dm3] 3L_12182630_SNP [dm6]	T	A	3.805e^-4	0.771	SYNONYMOUS_CODING CAH2
3L	3994326	3L_3994326_SNP [dm3] 3L_3994326_SNP [dm6]	A	G	3.806e^-4	0.771	DOWNSTREAM scrt INTERGENIC
3R	13485854	3R_13485854_SNP [dm3] 3R_17660132_SNP [dm6]	T	A	3.813e^-4	0.771	INTRON CG14322
2L	20607929	2L_20607929_SNP [dm3] 2L_20607929_SNP [dm6]	C	T	3.815e^-4	0.771	UPSTREAM CR43608 INTRON CR44909
2R	16772308	2R_16772308_SNP [dm3] 2R_20884803_SNP [dm6]	T	G	3.816e^-4	0.771	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	27121701	3R_27121701_SNP [dm3] 3R_31295979_SNP [dm6]	G	A	3.818e^-4	0.771	INTERGENIC
X	10693073	X_10693073_SNP [dm3] X_10799040_SNP [dm6]	A	G	3.822e^-4	0.771	INTRON Imp
2R	19255295	2R_19255295_SNP [dm3] 2R_23367772_SNP [dm6]	A	G	3.823e^-4	0.771	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4087396	2L_4087396_SNP [dm3] 2L_4087396_SNP [dm6]	T	C	3.828e^-4	0.771	INTRON ed
3L	13932209	3L_13932209_SNP [dm3] 3L_13939109_SNP [dm6]	G	T	3.842e^-4	0.771	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14439903	2R_14439903_SNP [dm3] 2R_18552398_SNP [dm6]	T	C	3.843e^-4	0.771	INTERGENIC
2L	7518637	2L_7518637_SNP [dm3] 2L_7518637_SNP [dm6]	G	A	3.845e^-4	0.771	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6771897	2R_6771897_SNP [dm3] 2R_10884392_SNP [dm6]	G	C	3.846e^-4	0.771	SYNONYMOUS_CODING CG18003 UPSTREAM CG18004
3R	20156216	3R_20156216_SNP [dm3] 3R_24330494_SNP [dm6]	T	G	3.851e^-4	0.771	NON_SYNONYMOUS_CODING CG5728	TF binding site mE1_TFBS_cad
2L	1091839	2L_1091839_SNP [dm3] 2L_1091839_SNP [dm6]	A	T	3.853e^-4	0.771	INTRON CG4629
2L	7513622	2L_7513622_SNP [dm3] 2L_7513622_SNP [dm6]	G	A	3.858e^-4	0.771	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11531059	3R_11531059_SNP [dm3] 3R_15705337_SNP [dm6]	A	G	3.861e^-4	0.771	INTRON CG5404
3L	11802896	3L_11802896_SNP [dm3] 3L_11809796_SNP [dm6]	C	A	3.876e^-4	0.771	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15672957	X_15672957_INS [dm3] X_15778924_INS [dm6]	A	ATAT	3.883e^-4	0.771	UPSTREAM CG43673 DOWNSTREAM CG43672 INTERGENIC
3L	11269825	3L_11269825_SNP [dm3] 3L_11276725_SNP [dm6]	A	G	3.887e^-4	0.771	INTERGENIC
X	16682531	X_16682531_SNP [dm3] X_16788498_SNP [dm6]	C	A	3.895e^-4	0.771	DOWNSTREAM Rrp45 INTRON Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12301648	3L_12301648_SNP [dm3] 3L_12308548_SNP [dm6]	G	A	3.904e^-4	0.771	INTERGENIC
3L	7515238	3L_7515238_SNP [dm3] 3L_7522138_SNP [dm6]	C	T	3.913e^-4	0.771	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9086182	3L_9086182_SNP [dm3] 3L_9093082_SNP [dm6]	A	G	3.920e^-4	0.771	UTR_5_PRIME CG32032 DOWNSTREAM Tequila
2L	7467995	2L_7467995_SNP [dm3] 2L_7467995_SNP [dm6]	T	A	3.925e^-4	0.771	INTRON CG6055
3R	2982202	3R_2982202_SNP [dm3] 3R_7156480_SNP [dm6]	T	A	3.926e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1332276	3L_1332276_DEL [dm3] 3L_1332276_DEL [dm6]	TATT	T	3.927e^-4	0.771	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
X	16671404	X_16671404_SNP [dm3] X_16777371_SNP [dm6]	A	G	3.932e^-4	0.771	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13202470	3R_13202470_SNP [dm3] 3R_17376748_SNP [dm6]	T	C	3.932e^-4	0.771	SYNONYMOUS_CODING Brf
2L	8203729	2L_8203729_SNP [dm3] 2L_8203729_SNP [dm6]	A	G	3.933e^-4	0.771	INTRON CR44119 & 1 other
2L	16523058	2L_16523058_SNP [dm3] 2L_16523058_SNP [dm6]	C	G	3.935e^-4	0.771	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
2L	9449724	2L_9449724_SNP [dm3] 2L_9449724_SNP [dm6]	C	A	3.936e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17442807	2L_17442807_SNP [dm3] 2L_17442807_SNP [dm6]	T	C	3.940e^-4	0.771	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13926036	3R_13926036_SNP [dm3] 3R_18100314_SNP [dm6]	C	T	3.940e^-4	0.771	INTRON sr
X	11325557	X_11325557_SNP [dm3] X_11431524_SNP [dm6]	C	G	3.946e^-4	0.771	UTR_3_PRIME Evi5
3L	12888894	3L_12888894_SNP [dm3] 3L_12895794_SNP [dm6]	C	T	3.965e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18605450	2R_18605450_SNP [dm3] 2R_22717945_SNP [dm6]	G	A	3.968e^-4	0.771	SYNONYMOUS_CODING jbug DOWNSTREAM CG30268	TF binding site mE1_TFBS_chinmo
2R	6194459	2R_6194459_SNP [dm3] 2R_10306954_SNP [dm6]	T	A	3.970e^-4	0.771	UTR_3_PRIME CAP DOWNSTREAM JhI-1 & 1 other
3R	19773327	3R_19773327_SNP [dm3] 3R_23947605_SNP [dm6]	G	A	3.972e^-4	0.771	INTRON CG12268
3R	11531048	3R_11531048_SNP [dm3] 3R_15705326_SNP [dm6]	A	C	3.972e^-4	0.771	INTRON CG5404
3R	9665821	3R_9665821_SNP [dm3] 3R_13840099_SNP [dm6]	T	C	3.975e^-4	0.771	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11223158	3R_11223158_SNP [dm3] 3R_15397436_SNP [dm6]	T	G	3.984e^-4	0.771	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7112793	2R_7112793_SNP [dm3] 2R_11225288_SNP [dm6]	T	G	3.986e^-4	0.771	SYNONYMOUS_CODING CG7737	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25988039	3R_25988039_SNP [dm3] 3R_30162317_SNP [dm6]	G	T	3.995e^-4	0.771	INTERGENIC
2R	19600315	2R_19600315_SNP [dm3] 2R_23712792_SNP [dm6]	G	A	3.998e^-4	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	8942400	2R_8942400_SNP [dm3] 2R_13054895_SNP [dm6]	A	C	4.001e^-4	0.771	DOWNSTREAM Drl-2 INTERGENIC
3R	21433084	3R_21433084_SNP [dm3] 3R_25607362_SNP [dm6]	T	C	4.002e^-4	0.771	UTR_3_PRIME msi INTRON ymp
2L	9091704	2L_9091704_SNP [dm3] 2L_9091704_SNP [dm6]	T	G	4.003e^-4	0.771	INTERGENIC
3R	25048096	3R_25048096_SNP [dm3] 3R_29222374_SNP [dm6]	G	T	4.006e^-4	0.771	UTR_3_PRIME CG1458 DOWNSTREAM Ef1gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6725787	3R_6725787_SNP [dm3] 3R_10900065_SNP [dm6]	A	C	4.009e^-4	0.771	INTERGENIC
3L	17806971	3L_17806971_SNP [dm3] 3L_17813871_SNP [dm6]	C	T	4.013e^-4	0.771	UPSTREAM cln3 INTRON cln3
3R	27121704	3R_27121704_SNP [dm3] 3R_31295982_SNP [dm6]	T	C	4.015e^-4	0.771	INTERGENIC
3L	20667855	3L_20667855_SNP [dm3] 3L_20674755_SNP [dm6]	T	C	4.015e^-4	0.771	INTERGENIC
2L	19892967	2L_19892967_SNP [dm3] 2L_19892967_SNP [dm6]	T	C	4.052e^-4	0.771	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi
2L	19892978	2L_19892978_SNP [dm3] 2L_19892978_SNP [dm6]	T	C	4.052e^-4	0.771	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi
2L	15019699	2L_15019699_SNP [dm3] 2L_15019699_SNP [dm6]	C	T	4.054e^-4	0.771	INTRON GABA-B-R1
2R	4372447	2R_4372447_SNP [dm3] 2R_8484942_SNP [dm6]	A	T	4.057e^-4	0.771	INTRON mtt
3L	1134989	3L_1134989_SNP [dm3] 3L_1134989_SNP [dm6]	G	T	4.059e^-4	0.771	INTERGENIC	regulatory region REDfly_CRMs
X	3158647	X_3158647_SNP [dm3] X_3264614_SNP [dm6]	G	C	4.068e^-4	0.771	INTRON dnc
2L	12330189	2L_12330189_SNP [dm3] 2L_12330189_SNP [dm6]	A	T	4.070e^-4	0.771	INTERGENIC
2R	11572391	2R_11572391_SNP [dm3] 2R_15684886_SNP [dm6]	C	T	4.071e^-4	0.771	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad
3L	16873016	3L_16873016_SNP [dm3] 3L_16879916_SNP [dm6]	C	T	4.077e^-4	0.771	DOWNSTREAM CG32170 INTRON Lmpt
2L	20316921	2L_20316921_SNP [dm3] 2L_20316921_SNP [dm6]	C	T	4.077e^-4	0.771	INTRON spir EXON CR43606
2R	16402075	2R_16402075_SNP [dm3] 2R_20514570_SNP [dm6]	G	A	4.078e^-4	0.771	INTERGENIC
3L	16359906	3L_16359906_DEL [dm3] 3L_16366806_DEL [dm6]	GCCGC	TG	4.078e^-4	0.771		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19914166	3R_19914166_SNP [dm3] 3R_24088444_SNP [dm6]	T	C	4.081e^-4	0.771	INTRON 4EHP
3R	11531060	3R_11531060_SNP [dm3] 3R_15705338_SNP [dm6]	A	T	4.081e^-4	0.771	INTRON CG5404
3R	23447791	3R_23447791_SNP [dm3] 3R_27622069_SNP [dm6]	T	A	4.085e^-4	0.771	INTRON Tusp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5831783	2R_5831783_INS [dm3] 2R_9944278_INS [dm6]	G	ATTTTTATATT...	4.090e^-4	0.771	UTR_5_PRIME Mef2 INTRON Mef2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25050376	3R_25050376_SNP [dm3] 3R_29224654_SNP [dm6]	C	A	4.093e^-4	0.771	NON_SYNONYMOUS_CODING Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11365687	3L_11365687_SNP [dm3] 3L_11372587_SNP [dm6]	T	C	4.103e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	15555837	2R_15555837_SNP [dm3] 2R_19668332_SNP [dm6]	T	G	4.104e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3L	3013281	3L_3013281_SNP [dm3] 3L_3013281_SNP [dm6]	A	G	4.107e^-4	0.771	INTERGENIC
2R	8942062	2R_8942062_SNP [dm3] 2R_13054557_SNP [dm6]	A	G	4.112e^-4	0.771	DOWNSTREAM Drl-2 INTERGENIC
2L	5396343	2L_5396343_SNP [dm3] 2L_5396343_SNP [dm6]	A	T	4.122e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7459441	2L_7459441_DEL [dm3] 2L_7459441_DEL [dm6]	TTGTAC	T	4.140e^-4	0.771	UPSTREAM Gr28b INTRON Gr28b
2L	3848169	2L_3848169_SNP [dm3] 2L_3848169_SNP [dm6]	T	A	4.141e^-4	0.771	INTERGENIC
2R	8514684	2R_8514684_SNP [dm3] 2R_12627179_SNP [dm6]	T	A	4.143e^-4	0.771	INTRON CG17760
3L	8865619	3L_8865619_SNP [dm3] 3L_8872519_SNP [dm6]	C	T	4.148e^-4	0.771	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	7521314	2L_7521314_SNP [dm3] 2L_7521314_SNP [dm6]	A	T	4.149e^-4	0.771	INTRON RapGAP1	TF binding site mE1_TFBS_bab1
2L	15867656	2L_15867656_SNP [dm3] 2L_15867656_SNP [dm6]	C	T	4.154e^-4	0.771	INTERGENIC
2L	7468062	2L_7468062_SNP [dm3] 2L_7468062_SNP [dm6]	G	A	4.158e^-4	0.771	INTRON CG6055
3R	21518581	3R_21518581_SNP [dm3] 3R_25692859_SNP [dm6]	T	A	4.160e^-4	0.771	INTERGENIC
3L	2204079	3L_2204079_SNP [dm3] 3L_2204079_SNP [dm6]	G	A	4.165e^-4	0.771	INTERGENIC
2L	20379199	2L_20379199_SNP [dm3] 2L_20379199_SNP [dm6]	C	T	4.166e^-4	0.771	INTRON CG16798
2L	11866250	2L_11866250_SNP [dm3] 2L_11866250_SNP [dm6]	G	A	4.167e^-4	0.771	INTRON Pde1c
3L	12140415	3L_12140415_SNP [dm3] 3L_12147315_SNP [dm6]	G	T	4.168e^-4	0.771	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	12130247	2L_12130247_SNP [dm3] 2L_12130247_SNP [dm6]	C	T	4.177e^-4	0.771	DOWNSTREAM rho-6 & 1 other INTERGENIC
3L	20929289	3L_20929289_SNP [dm3] 3L_20936189_SNP [dm6]	T	C	4.183e^-4	0.771	INTRON fng
3L	11803058	3L_11803058_SNP [dm3] 3L_11809958_SNP [dm6]	C	T	4.188e^-4	0.771	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad
3L	11269819	3L_11269819_SNP [dm3] 3L_11276719_SNP [dm6]	C	T	4.193e^-4	0.771	INTERGENIC
2R	15555804	2R_15555804_DEL [dm3] 2R_19668299_DEL [dm6]	ATTTTAAA	A	4.194e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	15555819	2R_15555819_SNP [dm3] 2R_19668314_SNP [dm6]	T	A	4.194e^-4	0.771	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	16407319	3R_16407319_SNP [dm3] 3R_20581597_SNP [dm6]	A	G	4.203e^-4	0.771	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
3R	16407321	3R_16407321_SNP [dm3] 3R_20581599_SNP [dm6]	G	A	4.203e^-4	0.771	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2L	6296609	2L_6296609_SNP [dm3] 2L_6296609_SNP [dm6]	G	A	4.213e^-4	0.771	NON_SYNONYMOUS_CODING Ddr
3L	20929220	3L_20929220_DEL [dm3] 3L_20936120_DEL [dm6]	CATCCTCGCTCCATTGC...	C	4.214e^-4	0.771	INTRON fng
2L	9449617	2L_9449617_SNP [dm3] 2L_9449617_SNP [dm6]	A	G	4.217e^-4	0.771	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18212176	3R_18212176_SNP [dm3] 3R_22386454_SNP [dm6]	G	A	4.219e^-4	0.771	UTR_3_PRIME CG43343 DOWNSTREAM CG5379
2R	18482681	2R_18482681_SNP [dm3] 2R_22595176_SNP [dm6]	A	G	4.221e^-4	0.771	SYNONYMOUS_CODING CG3927	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17949867	2L_17949867_SNP [dm3] 2L_17949867_SNP [dm6]	C	T	4.224e^-4	0.771	DOWNSTREAM CR44397 INTRON CR44398
2L	7488769	2L_7488769_INS [dm3] 2L_7488769_INS [dm6]	C	CA	4.224e^-4	0.771	INTRON Ziz
2L	20556798	2L_20556798_SNP [dm3] 2L_20556798_SNP [dm6]	T	C	4.226e^-4	0.771	INTERGENIC
X	6676530	X_6676530_SNP [dm3] X_6782497_SNP [dm6]	A	T	4.228e^-4	0.771	INTRON C3G
3R	6993836	3R_6993836_SNP [dm3] 3R_11168114_SNP [dm6]	T	C	4.234e^-4	0.771	UPSTREAM Ugt86De DOWNSTREAM Ugt35b INTERGENIC
3L	6429390	3L_6429390_SNP [dm3] 3L_6436290_SNP [dm6]	T	C	4.241e^-4	0.771	INTRON CG42747	TF binding site mE1_TFBS_cad
X	11586296	X_11586296_DEL [dm3] X_11692263_DEL [dm6]	GATCG	G	4.255e^-4	0.771	UTR_3_PRIME bif INTRON bif

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.248e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1431 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1361104	3L_1361104_SNP [dm3] 3L_1361104_SNP [dm6]	A	G	2.928e^-6	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11380211	2L_11380211_SNP [dm3] 2L_11380211_SNP [dm6]	T	A	5.205e^-6	1	INTERGENIC	regulatory region REDfly_CRMs
2L	11380092	2L_11380092_SNP [dm3] 2L_11380092_SNP [dm6]	G	A	6.200e^-6	1	INTERGENIC	regulatory region REDfly_CRMs
2L	11380086	2L_11380086_SNP [dm3] 2L_11380086_SNP [dm6]	T	A	6.211e^-6	1	INTERGENIC	regulatory region REDfly_CRMs
2L	11380058	2L_11380058_SNP [dm3] 2L_11380058_SNP [dm6]	T	A	7.142e^-6	1	INTERGENIC	regulatory region REDfly_CRMs
3R	7804295	3R_7804295_SNP [dm3] 3R_11978573_SNP [dm6]	T	G	9.240e^-6	1	UPSTREAM CR44135 DOWNSTREAM CG18547 INTERGENIC
3L	2862468	3L_2862468_SNP [dm3] 3L_2862468_SNP [dm6]	G	A	9.507e^-6	1	INTRON CG43444
3R	13874519	3R_13874519_SNP [dm3] 3R_18048797_SNP [dm6]	G	T	9.701e^-6	1	INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13056103	3R_13056103_DEL [dm3] 3R_17230381_DEL [dm6]	CC	C	1.098e^-5	1	INTERGENIC
2L	482978	2L_482978_SNP [dm3] 2L_482978_SNP [dm6]	T	C	1.183e^-5	1	INTRON ush	TF binding site mE1_TFBS_inv
2L	2229608	2L_2229608_SNP [dm3] 2L_2229608_SNP [dm6]	T	G	1.293e^-5	1	INTRON rti	TF binding site mE1_TFBS_HSA
2L	8509209	2L_8509209_SNP [dm3] 2L_8509209_SNP [dm6]	A	C	1.302e^-5	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3L	6766922	3L_6766922_SNP [dm3] 3L_6773822_SNP [dm6]	A	C	1.410e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
3L	4263154	3L_4263154_SNP [dm3] 3L_4263154_SNP [dm6]	A	G	1.431e^-5	1	UTR_3_PRIME VhaM9.7-a UPSTREAM CG11586 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11377919	2L_11377919_SNP [dm3] 2L_11377919_SNP [dm6]	C	T	1.574e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	15206521	2R_15206521_SNP [dm3] 2R_19319016_SNP [dm6]	C	T	1.670e^-5	1	INTRON Rgk1
3L	4260564	3L_4260564_SNP [dm3] 3L_4260564_SNP [dm6]	C	T	1.743e^-5	1	SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586
2L	11380230	2L_11380230_SNP [dm3] 2L_11380230_SNP [dm6]	C	A	1.915e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
3R	13055342	3R_13055342_SNP [dm3] 3R_17229620_SNP [dm6]	C	G	1.935e^-5	1	INTERGENIC
2L	8509210	2L_8509210_INS [dm3] 2L_8509210_INS [dm6]	T	TTTAGC	1.995e^-5	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2L	16480043	2L_16480043_SNP [dm3] 2L_16480043_SNP [dm6]	A	G	2.277e^-5	1	INTRON dac
3L	12579443	3L_12579443_SNP [dm3] 3L_12586343_SNP [dm6]	A	T	2.380e^-5	1	INTRON ara
2R	6924270	2R_6924270_SNP [dm3] 2R_11036765_SNP [dm6]	A	T	2.390e^-5	1	INTRON luna
X	17312195	X_17312195_INS [dm3] X_17418162_INS [dm6]	T	TT	2.431e^-5	1	INTRON CG8611	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11068391	2R_11068391_DEL [dm3] 2R_15180886_DEL [dm6]	TTAT	A	2.561e^-5	1	INTRON igl
2L	8509201	2L_8509201_SNP [dm3] 2L_8509201_SNP [dm6]	G	A	2.631e^-5	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
X	2366302	X_2366302_SNP [dm3] X_2472269_SNP [dm6]	C	A	2.782e^-5	1	INTRON trol
3L	11175015	3L_11175015_SNP [dm3] 3L_11181915_SNP [dm6]	C	A	2.802e^-5	1	INTRON GlcAT-P
2L	20985118	2L_20985118_SNP [dm3] 2L_20985118_SNP [dm6]	G	T	2.841e^-5	1	INTRON CG42238
3L	2721819	3L_2721819_SNP [dm3] 3L_2721819_SNP [dm6]	C	A	2.991e^-5	1	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21574370	3R_21574370_SNP [dm3] 3R_25748648_SNP [dm6]	G	A	3.248e^-5	1	INTRON LpR1
3L	344700	3L_344700_SNP [dm3] 3L_344700_SNP [dm6]	T	G	3.324e^-5	1	SYNONYMOUS_CODING mth INTRON Ptpmeg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11068458	2R_11068458_SNP [dm3] 2R_15180953_SNP [dm6]	T	A	3.386e^-5	1	INTRON igl
3R	27653836	3R_27653836_SNP [dm3] 3R_31828114_SNP [dm6]	A	C	3.464e^-5	1	INTRON RhoGAP100F
3R	21573660	3R_21573660_SNP [dm3] 3R_25747938_SNP [dm6]	G	A	3.496e^-5	1	INTRON LpR1
2R	13165560	2R_13165560_SNP [dm3] 2R_17278055_SNP [dm6]	T	C	3.550e^-5	1	INTRON mbl
2R	11068413	2R_11068413_SNP [dm3] 2R_15180908_SNP [dm6]	A	G	3.739e^-5	1	INTRON igl
2L	16547298	2L_16547298_SNP [dm3] 2L_16547298_SNP [dm6]	G	T	3.920e^-5	1	INTRON CG42389
2L	2229217	2L_2229217_SNP [dm3] 2L_2229217_SNP [dm6]	C	A	4.042e^-5	1	INTRON rti
X	8053676	X_8053676_SNP [dm3] X_8159643_SNP [dm6]	G	A	4.069e^-5	1	UPSTREAM CG15337 DOWNSTREAM GIIIspla2 INTERGENIC
3L	1466681	3L_1466681_SNP [dm3] 3L_1466681_SNP [dm6]	T	C	4.090e^-5	1	SYNONYMOUS_CODING rho INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	11068411	2R_11068411_SNP [dm3] 2R_15180906_SNP [dm6]	A	T	4.092e^-5	1	INTRON igl
2R	15591457	2R_15591457_SNP [dm3] 2R_19703952_SNP [dm6]	C	T	4.112e^-5	1	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	25295988	3R_25295988_SNP [dm3] 3R_29470266_SNP [dm6]	G	A	4.175e^-5	1	INTRON Ptp99A
2R	11068386	2R_11068386_SNP [dm3] 2R_15180881_SNP [dm6]	T	A	4.207e^-5	1	INTRON igl
2R	11068433	2R_11068433_DEL [dm3] 2R_15180928_DEL [dm6]	GAGTAG	G	4.208e^-5	1	INTRON igl
3R	25066872	3R_25066872_SNP [dm3] 3R_29241150_SNP [dm6]	G	A	4.372e^-5	1	SYNONYMOUS_CODING CG31445 UPSTREAM CG31427	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7816624	3R_7816624_SNP [dm3] 3R_11990902_SNP [dm6]	C	A	4.393e^-5	1	UPSTREAM mfas INTRON mfas
2R	13165556	2R_13165556_SNP [dm3] 2R_17278051_SNP [dm6]	T	C	4.440e^-5	1	INTRON mbl
2R	16443289	2R_16443289_SNP [dm3] 2R_20555784_SNP [dm6]	C	A	4.516e^-5	1	INTERGENIC
3L	6681873	3L_6681873_SNP [dm3] 3L_6688773_SNP [dm6]	G	A	4.524e^-5	1	DOWNSTREAM SP1173 INTERGENIC
2L	11379898	2L_11379898_SNP [dm3] 2L_11379898_SNP [dm6]	T	G	4.603e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
2R	13165561	2R_13165561_SNP [dm3] 2R_17278056_SNP [dm6]	C	T	4.677e^-5	1	INTRON mbl
3R	20767500	3R_20767500_SNP [dm3] 3R_24941778_SNP [dm6]	A	T	4.721e^-5	1	SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12579435	3L_12579435_SNP [dm3] 3L_12586335_SNP [dm6]	G	A	4.730e^-5	1	INTRON ara
X	16163531	X_16163531_SNP [dm3] X_16269498_SNP [dm6]	T	C	4.866e^-5	1	INTRON kat80
3R	7804309	3R_7804309_SNP [dm3] 3R_11978587_SNP [dm6]	T	C	4.920e^-5	1	UTR_3_PRIME CG18547 UPSTREAM CR44135
2R	20182874	2R_20182874_SNP [dm3] 2R_24295351_SNP [dm6]	G	A	4.936e^-5	1	UPSTREAM CG3394 INTRON CG3394	TF binding site mE1_TFBS_chinmo
2L	3129925	2L_3129925_SNP [dm3] 2L_3129925_SNP [dm6]	G	T	4.944e^-5	1	DOWNSTREAM CG15403 INTRON toc
3L	7173220	3L_7173220_SNP [dm3] 3L_7180120_SNP [dm6]	C	G	4.984e^-5	1	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11068421	2R_11068421_SNP [dm3] 2R_15180916_SNP [dm6]	C	A	5.020e^-5	1	INTRON igl
3R	7846934	3R_7846934_SNP [dm3] 3R_12021212_SNP [dm6]	C	T	5.147e^-5	1	INTERGENIC
2R	11068460	2R_11068460_SNP [dm3] 2R_15180955_SNP [dm6]	A	G	5.201e^-5	1	INTRON igl
X	13843488	X_13843488_SNP [dm3] X_13949455_SNP [dm6]	A	G	5.234e^-5	1	INTRON mamo
3R	7868174	3R_7868174_SNP [dm3] 3R_12042452_SNP [dm6]	A	G	5.264e^-5	1	SPLICE_SITE_REGION CG14736 INTRON CG14736
2L	1946814	2L_1946814_SNP [dm3] 2L_1946814_SNP [dm6]	T	G	5.360e^-5	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	3819592	3L_3819592_SNP [dm3] 3L_3819592_SNP [dm6]	T	A	5.372e^-5	1	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1946856	2L_1946856_SNP [dm3] 2L_1946856_SNP [dm6]	C	T	5.510e^-5	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	16307184	3R_16307184_SNP [dm3] 3R_20481462_SNP [dm6]	T	C	5.643e^-5	1	START_GAINED Gfrl UTR_5_PRIME Gfrl INTRON Gfrl
2R	11068383	2R_11068383_SNP [dm3] 2R_15180878_SNP [dm6]	A	T	5.677e^-5	1	INTRON igl
3L	19058997	3L_19058997_SNP [dm3] 3L_19065897_SNP [dm6]	A	T	5.730e^-5	1	UTR_3_PRIME CG6812 DOWNSTREAM Mkp3
3R	9537223	3R_9537223_SNP [dm3] 3R_13711501_SNP [dm6]	C	G	5.874e^-5	1	SYNONYMOUS_CODING primo-2 UTR_5_PRIME primo-1 UPSTREAM primo-1 DOWNSTREAM CR34044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12866990	X_12866990_SNP [dm3] X_12972957_SNP [dm6]	A	G	5.902e^-5	1	NON_SYNONYMOUS_CODING CG15721 DOWNSTREAM CR43152 INTRON CR43636	TF binding site mE1_TFBS_sens
2L	483234	2L_483234_SNP [dm3] 2L_483234_SNP [dm6]	T	C	5.947e^-5	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	10262356	2R_10262356_SNP [dm3] 2R_14374851_SNP [dm6]	C	T	6.027e^-5	1	SYNONYMOUS_CODING Obp50e UPSTREAM CG34185
2L	1946857	2L_1946857_SNP [dm3] 2L_1946857_SNP [dm6]	T	C	6.092e^-5	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	22577904	3R_22577904_SNP [dm3] 3R_26752182_SNP [dm6]	T	C	6.244e^-5	1	INTERGENIC
3L	12579429	3L_12579429_SNP [dm3] 3L_12586329_SNP [dm6]	A	C	6.308e^-5	1	INTRON ara
2R	15182989	2R_15182989_SNP [dm3] 2R_19295484_SNP [dm6]	G	A	6.493e^-5	1	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1946849	2L_1946849_DEL [dm3] 2L_1946849_DEL [dm6]	TTAGAT	T	6.574e^-5	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	8375993	3L_8375993_DEL [dm3] 3L_8382893_DEL [dm6]	AAGCGTTACAAACGT...	A	6.665e^-5	1	INTRON ImpE1	TF binding site mE1_TFBS_inv
3R	23882774	3R_23882774_SNP [dm3] 3R_28057052_SNP [dm6]	T	C	6.725e^-5	1	INTRON CG34362
2L	10907261	2L_10907261_SNP [dm3] 2L_10907261_SNP [dm6]	G	A	6.796e^-5	1	SYNONYMOUS_CODING CG7309
3R	27687252	3R_27687252_SNP [dm3] 3R_31861530_SNP [dm6]	G	A	6.806e^-5	1	INTRON heph
X	21310537	X_21310537_SNP [dm3] X_21439510_SNP [dm6]	A	C	7.118e^-5	1	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3R	27633498	3R_27633498_SNP [dm3] 3R_31807776_SNP [dm6]	G	A	7.241e^-5	1	SYNONYMOUS_CODING CG11576	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14017292	X_14017292_SNP [dm3] X_14123259_SNP [dm6]	T	C	7.292e^-5	1	INTERGENIC
3L	16428154	3L_16428154_SNP [dm3] 3L_16435054_SNP [dm6]	G	T	7.382e^-5	1	INTRON CG33158 & 1 other
2L	2794802	2L_2794802_DEL [dm3] 2L_2794802_DEL [dm6]	CC	C	7.497e^-5	1	INTRON Syt1
3R	7553161	3R_7553161_SNP [dm3] 3R_11727439_SNP [dm6]	C	T	7.623e^-5	1	NON_SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14913062	2L_14913062_SNP [dm3] 2L_14913062_SNP [dm6]	G	C	7.628e^-5	1	INTRON CG42313
2L	1946825	2L_1946825_SNP [dm3] 2L_1946825_SNP [dm6]	G	C	7.693e^-5	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	20198684	2R_20198684_SNP [dm3] 2R_24311161_SNP [dm6]	T	A	7.719e^-5	1	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
3R	27646980	3R_27646980_DEL [dm3] 3R_31821258_DEL [dm6]	CTATC	C	7.806e^-5	1	INTRON RhoGAP100F
3R	12329582	3R_12329582_SNP [dm3] 3R_16503860_SNP [dm6]	G	T	7.897e^-5	1	INTRON CG42342	TF binding site BDTNP1_TFBS_dl
2R	11746601	2R_11746601_SNP [dm3] 2R_15859096_SNP [dm6]	G	A	7.927e^-5	1	SYNONYMOUS_CODING Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14378790	2L_14378790_SNP [dm3] 2L_14378790_SNP [dm6]	C	A	8.016e^-5	1	UTR_3_PRIME ppk
3R	26935914	3R_26935914_SNP [dm3] 3R_31110192_SNP [dm6]	C	T	8.016e^-5	1	INTERGENIC
2R	13899824	2R_13899824_DEL [dm3] 2R_18012319_DEL [dm6]	TCCTG	C	8.029e^-5	1	INTERGENIC
2R	13774813	2R_13774813_SNP [dm3] 2R_17887308_SNP [dm6]	G	A	8.067e^-5	1	UTR_3_PRIME PPO1 INTRON Elk
3R	2628942	3R_2628942_SNP [dm3] 3R_6803220_SNP [dm6]	C	T	8.199e^-5	1	DOWNSTREAM Dfd INTERGENIC
3L	12579433	3L_12579433_SNP [dm3] 3L_12586333_SNP [dm6]	A	G	8.211e^-5	1	INTRON ara
2L	904868	2L_904868_SNP [dm3] 2L_904868_SNP [dm6]	C	T	8.234e^-5	1	DOWNSTREAM CR45261 INTERGENIC
2R	15591193	2R_15591193_SNP [dm3] 2R_19703688_SNP [dm6]	C	A	8.463e^-5	1	INTRON Obp56d	TF binding site mE1_TFBS_HSA
2R	13997322	2R_13997322_SNP [dm3] 2R_18109817_SNP [dm6]	T	A	8.486e^-5	1	UPSTREAM CG34196 INTERGENIC
2L	20974216	2L_20974216_SNP [dm3] 2L_20974216_SNP [dm6]	A	G	8.534e^-5	1	INTRON CG42238
2R	20194979	2R_20194979_SNP [dm3] 2R_24307456_SNP [dm6]	C	T	8.632e^-5	1	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	8509243	2L_8509243_SNP [dm3] 2L_8509243_SNP [dm6]	A	C	8.656e^-5	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16880188	2L_16880188_SNP [dm3] 2L_16880188_SNP [dm6]	T	A	8.833e^-5	1	UPSTREAM CG32832 INTRON CG31743 & 1 other
3R	4621596	3R_4621596_SNP [dm3] 3R_8795874_SNP [dm6]	C	T	8.880e^-5	1	NON_SYNONYMOUS_CODING Ir85a INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13427786	2R_13427786_SNP [dm3] 2R_17540281_SNP [dm6]	G	C	8.938e^-5	1	SYNONYMOUS_CODING CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15208602	2R_15208602_SNP [dm3] 2R_19321097_SNP [dm6]	A	C	9.003e^-5	1	INTRON Rgk1
2R	18649905	2R_18649905_SNP [dm3] 2R_22762400_SNP [dm6]	G	T	9.041e^-5	1	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8313943	2R_8313943_SNP [dm3] 2R_12426438_SNP [dm6]	A	T	9.117e^-5	1	DOWNSTREAM CG8520 & 1 other INTRON CG8525	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13490797	X_13490797_SNP [dm3] X_13596764_SNP [dm6]	G	A	9.128e^-5	1	INTRON up
3R	27283421	3R_27283421_SNP [dm3] 3R_31457699_SNP [dm6]	G	A	9.146e^-5	1	UTR_3_PRIME Gprk2 DOWNSTREAM Gprk2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	8158017	2R_8158017_SNP [dm3] 2R_12270512_SNP [dm6]	T	C	9.276e^-5	1	INTRON Cam	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	20329316	X_20329316_SNP [dm3] X_20458289_SNP [dm6]	A	C	9.288e^-5	1	INTRON CG32506	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13204225	3R_13204225_DEL [dm3] 3R_17378503_DEL [dm6]	CT	A	9.308e^-5	1	INTRON Brf
2R	15208601	2R_15208601_SNP [dm3] 2R_19321096_SNP [dm6]	A	T	9.319e^-5	1	INTRON Rgk1
3R	13204197	3R_13204197_SNP [dm3] 3R_17378475_SNP [dm6]	C	T	9.502e^-5	1	INTRON Brf
3L	16428161	3L_16428161_SNP [dm3] 3L_16435061_SNP [dm6]	G	T	9.601e^-5	1	INTRON CG33158 & 1 other
3L	2862497	3L_2862497_SNP [dm3] 3L_2862497_SNP [dm6]	T	C	9.633e^-5	1	INTRON CG43444
2R	11068461	2R_11068461_SNP [dm3] 2R_15180956_SNP [dm6]	A	T	9.954e^-5	1	INTRON igl
2L	2229223	2L_2229223_SNP [dm3] 2L_2229223_SNP [dm6]	A	C	1.004e^-4	1	INTRON rti
2L	11039638	2L_11039638_SNP [dm3] 2L_11039638_SNP [dm6]	A	C	1.010e^-4	1	INTRON Samuel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13156644	2R_13156644_SNP [dm3] 2R_17269139_SNP [dm6]	G	T	1.015e^-4	1	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2L	15258205	2L_15258205_SNP [dm3] 2L_15258205_SNP [dm6]	C	G	1.020e^-4	1	SYNONYMOUS_CODING yuri DOWNSTREAM l_2_35Cc
X	14017345	X_14017345_SNP [dm3] X_14123312_SNP [dm6]	C	A	1.034e^-4	1	INTERGENIC
2L	3091269	2L_3091269_SNP [dm3] 2L_3091269_SNP [dm6]	A	G	1.047e^-4	1	UPSTREAM toc INTRON toc
2L	3130021	2L_3130021_SNP [dm3] 2L_3130021_SNP [dm6]	G	T	1.047e^-4	1	DOWNSTREAM CG15403 INTRON toc
3R	22577878	3R_22577878_SNP [dm3] 3R_26752156_SNP [dm6]	C	T	1.049e^-4	1	INTERGENIC
2L	3574948	2L_3574948_SNP [dm3] 2L_3574948_SNP [dm6]	G	A	1.063e^-4	1	UPSTREAM CR43822 INTERGENIC
2R	4400613	2R_4400613_SNP [dm3] 2R_8513108_SNP [dm6]	C	T	1.085e^-4	1	INTRON mtt
X	9868344	X_9868344_SNP [dm3] X_9974311_SNP [dm6]	G	A	1.099e^-4	1	INTRON CG43386
3L	12329458	3L_12329458_DEL [dm3] 3L_12336358_DEL [dm6]	AT	A	1.100e^-4	1	UPSTREAM CG10418 & 1 other DOWNSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18123390	3L_18123390_SNP [dm3] 3L_18130290_SNP [dm6]	A	G	1.102e^-4	1	SYNONYMOUS_CODING Cyp312a1
2R	11068470	2R_11068470_SNP [dm3] 2R_15180965_SNP [dm6]	A	T	1.111e^-4	1	INTRON igl
3L	11175005	3L_11175005_SNP [dm3] 3L_11181905_SNP [dm6]	C	T	1.114e^-4	1	INTRON GlcAT-P
3L	13345434	3L_13345434_SNP [dm3] 3L_13352334_SNP [dm6]	A	T	1.116e^-4	1	SYNONYMOUS_CODING CG17687
3R	7816491	3R_7816491_SNP [dm3] 3R_11990769_SNP [dm6]	A	T	1.118e^-4	1	UPSTREAM mfas INTRON mfas
3L	13786308	3L_13786308_DEL [dm3] 3L_13793208_DEL [dm6]	AA	A	1.119e^-4	1	INTRON bru-3
X	8854352	X_8854352_DEL [dm3] X_8960319_DEL [dm6]	GG	G	1.128e^-4	1	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7999713	X_7999713_SNP [dm3] X_8105680_SNP [dm6]	G	A	1.134e^-4	1	SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8651440	2R_8651440_SNP [dm3] 2R_12763935_SNP [dm6]	T	C	1.145e^-4	1	DOWNSTREAM CG12374 INTERGENIC
3L	7165828	3L_7165828_SNP [dm3] 3L_7172728_SNP [dm6]	G	A	1.148e^-4	1	INTRON Dscam2
X	13370324	X_13370324_SNP [dm3] X_13476291_SNP [dm6]	C	T	1.167e^-4	1	INTRON Neto
X	12681224	X_12681224_SNP [dm3] X_12787191_SNP [dm6]	C	T	1.178e^-4	1	UTR_3_PRIME Pde9
2L	6863571	2L_6863571_SNP [dm3] 2L_6863571_SNP [dm6]	G	C	1.180e^-4	1	INTRON Nha1
3R	13874439	3R_13874439_SNP [dm3] 3R_18048717_SNP [dm6]	A	C	1.184e^-4	1	INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8375991	3L_8375991_SNP [dm3] 3L_8382891_SNP [dm6]	T	A	1.185e^-4	1	INTRON ImpE1	TF binding site mE1_TFBS_inv
X	2614076	X_2614076_SNP [dm3] X_2720043_SNP [dm6]	C	A	1.188e^-4	1	UPSTREAM fs_1_Yb INTRON CG2701	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10907267	2L_10907267_SNP [dm3] 2L_10907267_SNP [dm6]	G	T	1.192e^-4	1	SYNONYMOUS_CODING CG7309
2R	9259929	2R_9259929_SNP [dm3] 2R_13372424_SNP [dm6]	C	T	1.196e^-4	1	INTERGENIC
3R	23986538	3R_23986538_SNP [dm3] 3R_28160816_SNP [dm6]	A	C	1.197e^-4	1	INTRON CG34354
X	9869685	X_9869685_INS [dm3] X_9975652_INS [dm6]	T	GCCAA	1.234e^-4	1	INTRON CG43386
2R	13483119	2R_13483119_SNP [dm3] 2R_17595614_SNP [dm6]	A	C	1.242e^-4	1	NON_SYNONYMOUS_CODING CG11423 INTRON lack
3L	14193067	3L_14193067_SNP [dm3] 3L_14199967_SNP [dm6]	C	A	1.279e^-4	1	UTR_5_PRIME nuf	TF binding site mE1_TFBS_HSA
X	3450169	X_3450169_SNP [dm3] X_3556136_SNP [dm6]	A	G	1.284e^-4	1	INTRON CG32791
2L	11373214	2L_11373214_SNP [dm3] 2L_11373214_SNP [dm6]	G	A	1.295e^-4	1	UTR_3_PRIME salr	TF binding site mE1_TFBS_cad
X	9868363	X_9868363_SNP [dm3] X_9974330_SNP [dm6]	A	T	1.317e^-4	1	INTRON CG43386
2R	7445333	2R_7445333_SNP [dm3] 2R_11557828_SNP [dm6]	C	T	1.322e^-4	1	INTERGENIC
2R	18163553	2R_18163553_SNP [dm3] 2R_22276048_SNP [dm6]	T	C	1.343e^-4	1	INTRON dve
3L	17258993	3L_17258993_SNP [dm3] 3L_17265893_SNP [dm6]	T	A	1.344e^-4	1	DOWNSTREAM CG13723 INTERGENIC
2L	10907258	2L_10907258_SNP [dm3] 2L_10907258_SNP [dm6]	A	G	1.344e^-4	1	SYNONYMOUS_CODING CG7309
3L	6681862	3L_6681862_SNP [dm3] 3L_6688762_SNP [dm6]	T	C	1.346e^-4	1	DOWNSTREAM SP1173 INTERGENIC
3R	1869107	3R_1869107_SNP [dm3] 3R_6043385_SNP [dm6]	A	G	1.356e^-4	1	INTERGENIC
X	13490825	X_13490825_SNP [dm3] X_13596792_SNP [dm6]	A	T	1.363e^-4	1	INTRON up
2R	8651395	2R_8651395_SNP [dm3] 2R_12763890_SNP [dm6]	C	T	1.369e^-4	1	DOWNSTREAM CG12374 INTERGENIC
2L	483832	2L_483832_SNP [dm3] 2L_483832_SNP [dm6]	G	C	1.372e^-4	1	INTRON ush	TF binding site mE1_TFBS_Trl
2L	10726514	2L_10726514_SNP [dm3] 2L_10726514_SNP [dm6]	T	A	1.380e^-4	1	INTRON CG6431
2R	12770222	2R_12770222_SNP [dm3] 2R_16882717_SNP [dm6]	G	A	1.382e^-4	1	INTRON CG8910 & 1 other
3R	18833843	3R_18833843_SNP [dm3] 3R_23008121_SNP [dm6]	A	G	1.403e^-4	1	SYNONYMOUS_CODING CG34375	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17155643	2L_17155643_SNP [dm3] 2L_17155643_SNP [dm6]	A	G	1.407e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14498737	3L_14498737_SNP [dm3] 3L_14505637_SNP [dm6]	T	C	1.417e^-4	1	INTRON bbg
2L	486830	2L_486830_SNP [dm3] 2L_486830_SNP [dm6]	A	C	1.442e^-4	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	8651396	2R_8651396_SNP [dm3] 2R_12763891_SNP [dm6]	G	A	1.442e^-4	1	DOWNSTREAM CG12374 INTERGENIC
3L	15470657	3L_15470657_SNP [dm3] 3L_15477557_SNP [dm6]	A	C	1.444e^-4	1	INTERGENIC
3R	10615241	3R_10615241_SNP [dm3] 3R_14789519_SNP [dm6]	C	T	1.445e^-4	1	INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13167362	X_13167362_SNP [dm3] X_13273329_SNP [dm6]	G	A	1.457e^-4	1	UPSTREAM HDAC4 INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13204234	3R_13204234_SNP [dm3] 3R_17378512_SNP [dm6]	A	C	1.468e^-4	1	INTRON Brf
3L	4556565	3L_4556565_SNP [dm3] 3L_4556565_SNP [dm6]	C	T	1.468e^-4	1	UPSTREAM CG42540 INTRON CG42540	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22324088	3R_22324088_SNP [dm3] 3R_26498366_SNP [dm6]	G	C	1.478e^-4	1	INTRON plum
2R	3892412	2R_3892412_SNP [dm3] 2R_8004907_SNP [dm6]	G	A	1.480e^-4	1	SYNONYMOUS_CODING Odc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9868810	X_9868810_SNP [dm3] X_9974777_SNP [dm6]	C	G	1.482e^-4	1	INTRON CG43386
3L	8375988	3L_8375988_SNP [dm3] 3L_8382888_SNP [dm6]	C	T	1.488e^-4	1	INTRON ImpE1	TF binding site mE1_TFBS_inv
2L	13604034	2L_13604034_SNP [dm3] 2L_13604034_SNP [dm6]	C	T	1.503e^-4	1	INTRON kuz
2R	4626459	2R_4626459_SNP [dm3] 2R_8738954_SNP [dm6]	T	A	1.511e^-4	1	INTRON CG8740
3L	7314442	3L_7314442_SNP [dm3] 3L_7321342_SNP [dm6]	C	T	1.515e^-4	1	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607	TF binding site mE1_TFBS_sens
2R	18190819	2R_18190819_SNP [dm3] 2R_22303314_SNP [dm6]	T	C	1.537e^-4	1	INTRON wdp
3L	12973845	3L_12973845_SNP [dm3] 3L_12980745_SNP [dm6]	T	A	1.538e^-4	1	INTERGENIC
2R	9607597	2R_9607597_SNP [dm3] 2R_13720092_SNP [dm6]	T	A	1.539e^-4	1	INTRON fas
3R	25143732	3R_25143732_SNP [dm3] 3R_29318010_SNP [dm6]	G	T	1.557e^-4	1	INTRON Cnx99A
3R	25067137	3R_25067137_SNP [dm3] 3R_29241415_SNP [dm6]	G	A	1.559e^-4	1	NON_SYNONYMOUS_CODING CG31445	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25616364	3R_25616364_DEL [dm3] 3R_29790642_DEL [dm6]	AATC	A	1.562e^-4	1	INTRON kay	TF binding site mE1_TFBS_cad
X	20690020	X_20690020_SNP [dm3] X_20818993_SNP [dm6]	G	A	1.563e^-4	1	INTRON shakB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22325924	3R_22325924_SNP [dm3] 3R_26500202_SNP [dm6]	G	A	1.567e^-4	1	INTRON plum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9485679	2R_9485679_SNP [dm3] 2R_13598174_SNP [dm6]	G	C	1.570e^-4	1	SYNONYMOUS_CODING S-Lap5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7589370	3L_7589370_DEL [dm3] 3L_7596270_DEL [dm6]	AGTAAA	A	1.578e^-4	1	UPSTREAM CG33275 INTRON CG33275
X	14017314	X_14017314_SNP [dm3] X_14123281_SNP [dm6]	T	C	1.586e^-4	1	INTERGENIC
3R	23882772	3R_23882772_SNP [dm3] 3R_28057050_SNP [dm6]	A	G	1.588e^-4	1	INTRON CG34362
2R	17293307	2R_17293307_SNP [dm3] 2R_21405802_SNP [dm6]	T	A	1.600e^-4	1	INTRON Sdc
X	2706804	X_2706804_SNP [dm3] X_2812771_SNP [dm6]	C	T	1.618e^-4	1	INTRON kirre
X	2706810	X_2706810_SNP [dm3] X_2812777_SNP [dm6]	G	T	1.618e^-4	1	INTRON kirre
2R	15591183	2R_15591183_SNP [dm3] 2R_19703678_SNP [dm6]	A	T	1.623e^-4	1	INTRON Obp56d	TF binding site mE1_TFBS_HSA
3R	16003944	3R_16003944_SNP [dm3] 3R_20178222_SNP [dm6]	G	T	1.625e^-4	1	INTERGENIC
X	14373336	X_14373336_SNP [dm3] X_14479303_SNP [dm6]	G	T	1.631e^-4	1	INTRON CG9411
3L	5284561	3L_5284561_SNP [dm3] 3L_5291461_SNP [dm6]	G	A	1.635e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15159354	X_15159354_SNP [dm3] X_15265321_SNP [dm6]	C	A	1.647e^-4	1	INTERGENIC
2L	2794753	2L_2794753_SNP [dm3] 2L_2794753_SNP [dm6]	G	T	1.684e^-4	1	INTRON Syt1
3L	2862370	3L_2862370_SNP [dm3] 3L_2862370_SNP [dm6]	G	T	1.705e^-4	1	INTRON CG43444
3R	7829646	3R_7829646_SNP [dm3] 3R_12003924_SNP [dm6]	T	C	1.706e^-4	1	DOWNSTREAM Ect3 INTRON Tk
2R	8289626	2R_8289626_SNP [dm3] 2R_12402121_SNP [dm6]	G	T	1.713e^-4	1	UPSTREAM Cpr49Ae INTERGENIC
3R	21484821	3R_21484821_SNP [dm3] 3R_25659099_SNP [dm6]	T	C	1.753e^-4	1	INTRON Tnks	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17705536	2R_17705536_SNP [dm3] 2R_21818031_SNP [dm6]	C	T	1.768e^-4	1	INTERGENIC
3L	2343308	3L_2343308_SNP [dm3] 3L_2343308_SNP [dm6]	G	A	1.773e^-4	1	SYNONYMOUS_CODING MsR1
2L	1946802	2L_1946802_SNP [dm3] 2L_1946802_SNP [dm6]	A	G	1.773e^-4	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	27283418	3R_27283418_SNP [dm3] 3R_31457696_SNP [dm6]	C	T	1.782e^-4	1	UTR_3_PRIME Gprk2 DOWNSTREAM Gprk2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	3576457	2L_3576457_SNP [dm3] 2L_3576457_SNP [dm6]	G	A	1.786e^-4	1	UTR_3_PRIME CG43815 DOWNSTREAM CR43822
3R	11658808	3R_11658808_SNP [dm3] 3R_15833086_SNP [dm6]	A	G	1.793e^-4	1	SYNONYMOUS_CODING CG43318 UPSTREAM rec DOWNSTREAM CG43317	TF binding site mE1_TFBS_inv
3L	12560687	3L_12560687_SNP [dm3] 3L_12567587_SNP [dm6]	A	T	1.795e^-4	1	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9682364	2R_9682364_SNP [dm3] 2R_13794859_SNP [dm6]	T	A	1.833e^-4	1	UTR_5_PRIME Cpr50Cb	TF binding site mE1_TFBS_Trl
3R	9862032	3R_9862032_SNP [dm3] 3R_14036310_SNP [dm6]	A	G	1.851e^-4	1	UTR_5_PRIME CG9922 UPSTREAM CG9922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13344370	3L_13344370_SNP [dm3] 3L_13351270_SNP [dm6]	T	A	1.852e^-4	1	INTRON CG17687	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8375969	3L_8375969_SNP [dm3] 3L_8382869_SNP [dm6]	A	G	1.854e^-4	1	INTRON ImpE1	TF binding site mE1_TFBS_inv
X	12680651	X_12680651_SNP [dm3] X_12786618_SNP [dm6]	G	A	1.866e^-4	1	UTR_3_PRIME Pde9
3R	27652132	3R_27652132_SNP [dm3] 3R_31826410_SNP [dm6]	C	T	1.867e^-4	1	INTRON RhoGAP100F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14017353	X_14017353_SNP [dm3] X_14123320_SNP [dm6]	C	T	1.884e^-4	1	INTERGENIC
3R	22334836	3R_22334836_SNP [dm3] 3R_26509114_SNP [dm6]	G	A	1.893e^-4	1	INTRON plum
3R	27283399	3R_27283399_SNP [dm3] 3R_31457677_SNP [dm6]	T	C	1.913e^-4	1	UTR_3_PRIME Gprk2 DOWNSTREAM Gprk2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	22868136	3L_22868136_SNP [dm3] 3L_22875036_SNP [dm6]	A	T	1.914e^-4	1	INTRON Chro	transposable element FlyBase
3R	26912242	3R_26912242_SNP [dm3] 3R_31086520_SNP [dm6]	T	C	1.924e^-4	1	INTERGENIC
3L	344694	3L_344694_SNP [dm3] 3L_344694_SNP [dm6]	A	T	1.930e^-4	1	SYNONYMOUS_CODING mth INTRON Ptpmeg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12202330	2R_12202330_SNP [dm3] 2R_16314825_SNP [dm6]	T	C	1.997e^-4	1	SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_cad
2R	19569457	2R_19569457_SNP [dm3] 2R_23681934_SNP [dm6]	A	G	2.013e^-4	1	SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11662860	3R_11662860_SNP [dm3] 3R_15837138_SNP [dm6]	T	C	2.021e^-4	1	UPSTREAM mir-4911 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	17755728	2R_17755728_DEL [dm3] 2R_21868223_DEL [dm6]	ACAACTATTGT...	A	2.029e^-4	1	INTERGENIC
2R	7706482	2R_7706482_DEL [dm3] 2R_11818977_DEL [dm6]	TAACAACAAACT...	T	2.029e^-4	1	INTERGENIC
2R	11047799	2R_11047799_SNP [dm3] 2R_15160294_SNP [dm6]	A	G	2.032e^-4	1	UPSTREAM CR43831 INTRON igl
3L	5695101	3L_5695101_SNP [dm3] 3L_5702001_SNP [dm6]	C	T	2.034e^-4	1	INTRON sif
X	19220019	X_19220019_SNP [dm3] X_19325986_SNP [dm6]	G	T	2.036e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3R	24537023	3R_24537023_SNP [dm3] 3R_28711301_SNP [dm6]	G	A	2.049e^-4	1	INTRON htt
3L	8807367	3L_8807367_SNP [dm3] 3L_8814267_SNP [dm6]	G	T	2.063e^-4	1	INTERGENIC
X	13370322	X_13370322_SNP [dm3] X_13476289_SNP [dm6]	G	T	2.078e^-4	1	INTRON Neto
3R	21327498	3R_21327498_SNP [dm3] 3R_25501776_SNP [dm6]	A	T	2.079e^-4	1	DOWNSTREAM CR43456 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5008307	X_5008307_SNP [dm3] X_5114274_SNP [dm6]	T	A	2.080e^-4	1	INTRON rg & 1 other
3L	10259739	3L_10259739_SNP [dm3] 3L_10266639_SNP [dm6]	C	G	2.085e^-4	1	INTRON can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7545773	2L_7545773_SNP [dm3] 2L_7545773_SNP [dm6]	C	G	2.090e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA
2R	7624677	2R_7624677_SNP [dm3] 2R_11737172_SNP [dm6]	T	A	2.104e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	8651447	2R_8651447_SNP [dm3] 2R_12763942_SNP [dm6]	C	T	2.118e^-4	1	DOWNSTREAM CG12374 INTERGENIC
X	13641956	X_13641956_SNP [dm3] X_13747923_SNP [dm6]	G	A	2.131e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17837532	2L_17837532_SNP [dm3] 2L_17837532_SNP [dm6]	T	C	2.137e^-4	1	INTRON CadN2
3R	22321604	3R_22321604_SNP [dm3] 3R_26495882_SNP [dm6]	G	T	2.151e^-4	1	INTRON plum
2L	11379879	2L_11379879_SNP [dm3] 2L_11379879_SNP [dm6]	T	A	2.162e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	12782873	2R_12782873_SNP [dm3] 2R_16895368_SNP [dm6]	T	C	2.165e^-4	1	UPSTREAM mir-990 INTRON CG8910
2L	11380159	2L_11380159_SNP [dm3] 2L_11380159_SNP [dm6]	T	A	2.170e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	7387721	3L_7387721_SNP [dm3] 3L_7394621_SNP [dm6]	G	A	2.170e^-4	1	INTRON CG8563
3R	10615240	3R_10615240_SNP [dm3] 3R_14789518_SNP [dm6]	T	C	2.176e^-4	1	INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1947150	2L_1947150_DEL [dm3] 2L_1947150_DEL [dm6]	CG	C	2.206e^-4	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	2614082	X_2614082_SNP [dm3] X_2720049_SNP [dm6]	G	A	2.213e^-4	1	UPSTREAM fs_1_Yb INTRON CG2701	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8568722	3L_8568722_SNP [dm3] 3L_8575622_SNP [dm6]	G	A	2.215e^-4	1	SYNONYMOUS_CODING CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	11174991	3L_11174991_SNP [dm3] 3L_11181891_SNP [dm6]	A	T	2.219e^-4	1	INTRON GlcAT-P
3R	26676337	3R_26676337_SNP [dm3] 3R_30850615_SNP [dm6]	C	A	2.234e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10755790	3L_10755790_SNP [dm3] 3L_10762690_SNP [dm6]	C	T	2.249e^-4	1	INTERGENIC
2R	15591953	2R_15591953_SNP [dm3] 2R_19704448_SNP [dm6]	C	T	2.250e^-4	1	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	6033755	3R_6033755_SNP [dm3] 3R_10208033_SNP [dm6]	C	T	2.255e^-4	1	INTRON Syn & 1 other
3R	26165099	3R_26165099_SNP [dm3] 3R_30339377_SNP [dm6]	A	T	2.265e^-4	1	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17566396	2R_17566396_SNP [dm3] 2R_21678891_SNP [dm6]	A	T	2.276e^-4	1	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16185305	3L_16185305_SNP [dm3] 3L_16192205_SNP [dm6]	G	T	2.276e^-4	1	INTERGENIC
2R	18153429	2R_18153429_SNP [dm3] 2R_22265924_SNP [dm6]	G	A	2.280e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10410942	3R_10410942_SNP [dm3] 3R_14585220_SNP [dm6]	A	G	2.283e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_prd
X	5350566	X_5350566_SNP [dm3] X_5456533_SNP [dm6]	A	T	2.290e^-4	1	INTRON SPR
2R	1003751	2R_1003751_DEL [dm3] 2R_5116246_DEL [dm6]	ATAA	A	2.292e^-4	1	DOWNSTREAM gus INTERGENIC	transposable element FlyBase
2R	7620545	2R_7620545_SNP [dm3] 2R_11733040_SNP [dm6]	G	C	2.311e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10264599	2R_10264599_SNP [dm3] 2R_14377094_SNP [dm6]	G	T	2.311e^-4	1	DOWNSTREAM CG30075 INTERGENIC
3L	15470352	3L_15470352_SNP [dm3] 3L_15477252_SNP [dm6]	T	C	2.324e^-4	1	INTERGENIC
3L	9525659	3L_9525659_SNP [dm3] 3L_9532559_SNP [dm6]	C	T	2.327e^-4	1	INTERGENIC
3L	15489038	3L_15489038_SNP [dm3] 3L_15495938_SNP [dm6]	G	C	2.336e^-4	1	UPSTREAM CG12355 & 1 other INTERGENIC
3R	23986520	3R_23986520_SNP [dm3] 3R_28160798_SNP [dm6]	A	T	2.337e^-4	1	INTRON CG34354
3R	24629955	3R_24629955_SNP [dm3] 3R_28804233_SNP [dm6]	G	T	2.337e^-4	1	INTERGENIC
3R	5966475	3R_5966475_SNP [dm3] 3R_10140753_SNP [dm6]	T	C	2.339e^-4	1	UTR_3_PRIME TAF1B UPSTREAM tws	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16938464	X_16938464_SNP [dm3] X_17044431_SNP [dm6]	A	G	2.357e^-4	1	INTRON CG45002
2R	2364381	2R_2364381_SNP [dm3] 2R_6476876_SNP [dm6]	T	C	2.360e^-4	1	INTERGENIC	transposable element FlyBase
3R	13204190	3R_13204190_SNP [dm3] 3R_17378468_SNP [dm6]	C	T	2.360e^-4	1	INTRON Brf
3L	12411295	3L_12411295_SNP [dm3] 3L_12418195_SNP [dm6]	A	C	2.364e^-4	1	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	8568797	3L_8568797_SNP [dm3] 3L_8575697_SNP [dm6]	T	C	2.365e^-4	1	SYNONYMOUS_CODING CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11353264	2L_11353264_SNP [dm3] 2L_11353264_SNP [dm6]	A	G	2.373e^-4	1	UPSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	12146589	2R_12146589_SNP [dm3] 2R_16259084_SNP [dm6]	T	G	2.379e^-4	1	INTRON CngA
3L	2617910	3L_2617910_SNP [dm3] 3L_2617910_SNP [dm6]	G	A	2.417e^-4	1	INTRON Pxn
X	19430549	X_19430549_SNP [dm3] X_19536516_SNP [dm6]	G	C	2.428e^-4	1	INTRON CG32532
3R	13920078	3R_13920078_SNP [dm3] 3R_18094356_SNP [dm6]	T	A	2.430e^-4	1	INTRON sr
X	18953462	X_18953462_SNP [dm3] X_19059429_SNP [dm6]	A	T	2.442e^-4	1	INTRON CG14190
X	18953475	X_18953475_SNP [dm3] X_19059442_SNP [dm6]	A	G	2.442e^-4	1	INTRON CG14190
2R	18120149	2R_18120149_SNP [dm3] 2R_22232644_SNP [dm6]	C	A	2.446e^-4	1	INTERGENIC
2R	16578975	2R_16578975_SNP [dm3] 2R_20691470_SNP [dm6]	C	T	2.452e^-4	1	UPSTREAM CR44659 INTERGENIC
2L	16471379	2L_16471379_SNP [dm3] 2L_16471379_SNP [dm6]	C	T	2.452e^-4	1	INTRON dac	regulatory region REDfly_CRMs
3R	9678140	3R_9678140_SNP [dm3] 3R_13852418_SNP [dm6]	G	C	2.456e^-4	1	INTERGENIC
3R	22320980	3R_22320980_SNP [dm3] 3R_26495258_SNP [dm6]	T	A	2.457e^-4	1	INTRON plum
3R	17334086	3R_17334086_SNP [dm3] 3R_21508364_SNP [dm6]	A	T	2.458e^-4	1	INTRON C15
2L	7247427	2L_7247427_SNP [dm3] 2L_7247427_SNP [dm6]	C	G	2.472e^-4	1	INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21103067	3L_21103067_SNP [dm3] 3L_21109967_SNP [dm6]	G	A	2.474e^-4	1	INTRON ko	regulatory region REDfly_CRMs
3R	13920011	3R_13920011_SNP [dm3] 3R_18094289_SNP [dm6]	A	G	2.480e^-4	1	INTRON sr
3L	16851645	3L_16851645_SNP [dm3] 3L_16858545_SNP [dm6]	A	T	2.482e^-4	1	UTR_3_PRIME sina UPSTREAM sinah INTRON Rh4
2R	7815863	2R_7815863_SNP [dm3] 2R_11928358_SNP [dm6]	A	G	2.485e^-4	1	DOWNSTREAM CR44312 INTERGENIC
X	8716384	X_8716384_SNP [dm3] X_8822351_SNP [dm6]	C	A	2.489e^-4	1	INTERGENIC
3R	26165096	3R_26165096_INS [dm3] 3R_30339374_INS [dm6]	T	TTATTTAATCG...	2.497e^-4	1	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4059499	X_4059499_SNP [dm3] X_4165466_SNP [dm6]	G	A	2.524e^-4	1	INTRON Fas2
3R	10884061	3R_10884061_SNP [dm3] 3R_15058339_SNP [dm6]	T	A	2.527e^-4	1	INTRON dpr9
2R	15005222	2R_15005222_SNP [dm3] 2R_19117717_SNP [dm6]	C	G	2.531e^-4	1	INTRON 5-HT1A
3R	5196323	3R_5196323_SNP [dm3] 3R_9370601_SNP [dm6]	T	G	2.532e^-4	1	INTRON FER
3R	27638099	3R_27638099_SNP [dm3] 3R_31812377_SNP [dm6]	T	C	2.533e^-4	1	UPSTREAM RhoGAP100F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	7819369	3R_7819369_SNP [dm3] 3R_11993647_SNP [dm6]	C	A	2.534e^-4	1	UPSTREAM mfas DOWNSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3505706	2L_3505706_SNP [dm3] 2L_3505706_SNP [dm6]	A	G	2.537e^-4	1	INTRON tim	TF binding site BDTNP1_TFBS_twi
2R	15591340	2R_15591340_SNP [dm3] 2R_19703835_SNP [dm6]	C	T	2.550e^-4	1	UTR_5_PRIME Obp56d UPSTREAM Obp56d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12646910	3R_12646910_SNP [dm3] 3R_16821188_SNP [dm6]	G	A	2.553e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12646938	3R_12646938_SNP [dm3] 3R_16821216_SNP [dm6]	C	G	2.553e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15592066	2R_15592066_SNP [dm3] 2R_19704561_SNP [dm6]	G	T	2.554e^-4	1	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	27653500	3R_27653500_SNP [dm3] 3R_31827778_SNP [dm6]	A	G	2.568e^-4	1	UTR_5_PRIME RhoGAP100F UPSTREAM RhoGAP100F INTRON RhoGAP100F
3L	3140748	3L_3140748_SNP [dm3] 3L_3140748_SNP [dm6]	C	T	2.588e^-4	1	UPSTREAM CG11537 INTRON CG11537
X	18222018	X_18222018_SNP [dm3] X_18327985_SNP [dm6]	T	C	2.594e^-4	1	SYNONYMOUS_CODING CG6123	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	1980155	3L_1980155_SNP [dm3] 3L_1980155_SNP [dm6]	G	C	2.595e^-4	1	INTERGENIC
3L	12696412	3L_12696412_INS [dm3] 3L_12703312_INS [dm6]	A	AACCCCA	2.597e^-4	1	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8628119	3L_8628119_SNP [dm3] 3L_8635019_SNP [dm6]	C	T	2.605e^-4	1	SYNONYMOUS_CODING Zasp66 UPSTREAM Cdc6
X	13370328	X_13370328_DEL [dm3] X_13476295_DEL [dm6]	AA	A	2.615e^-4	1	INTRON Neto
2L	3505682	2L_3505682_SNP [dm3] 2L_3505682_SNP [dm6]	A	T	2.623e^-4	1	INTRON tim	TF binding site BDTNP1_TFBS_twi
3L	15470568	3L_15470568_DEL [dm3] 3L_15477468_DEL [dm6]	ATATAATA	A	2.627e^-4	1	INTERGENIC
X	18468811	X_18468811_SNP [dm3] X_18574778_SNP [dm6]	T	G	2.634e^-4	1	INTERGENIC
3R	20530719	3R_20530719_SNP [dm3] 3R_24704997_SNP [dm6]	A	C	2.640e^-4	1	INTRON slo
3R	13920008	3R_13920008_SNP [dm3] 3R_18094286_SNP [dm6]	C	A	2.641e^-4	1	INTRON sr
3L	7194324	3L_7194324_SNP [dm3] 3L_7201224_SNP [dm6]	C	T	2.649e^-4	1	INTERGENIC
3R	10414058	3R_10414058_SNP [dm3] 3R_14588336_SNP [dm6]	A	G	2.651e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11373178	2L_11373178_SNP [dm3] 2L_11373178_SNP [dm6]	A	G	2.652e^-4	1	NON_SYNONYMOUS_CODING salr
3R	13920012	3R_13920012_SNP [dm3] 3R_18094290_SNP [dm6]	A	T	2.660e^-4	1	INTRON sr
3L	11669508	3L_11669508_SNP [dm3] 3L_11676408_SNP [dm6]	C	T	2.668e^-4	1	INTRON CG32085
3L	19916695	3L_19916695_SNP [dm3] 3L_19923595_SNP [dm6]	G	A	2.698e^-4	1	UPSTREAM CG7770 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27654361	3R_27654361_SNP [dm3] 3R_31828639_SNP [dm6]	C	T	2.699e^-4	1	INTRON RhoGAP100F
X	21292604	X_21292604_SNP [dm3] X_21421577_SNP [dm6]	T	A	2.700e^-4	1	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
2R	18594709	2R_18594709_SNP [dm3] 2R_22707204_SNP [dm6]	A	G	2.702e^-4	1	SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
3L	1363531	3L_1363531_SNP [dm3] 3L_1363531_SNP [dm6]	T	C	2.726e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	7812572	3R_7812572_SNP [dm3] 3R_11986850_SNP [dm6]	A	G	2.732e^-4	1	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad
3R	21674644	3R_21674644_SNP [dm3] 3R_25848922_SNP [dm6]	C	G	2.736e^-4	1	DOWNSTREAM CR45657 INTERGENIC
2L	2924383	2L_2924383_INS [dm3] 2L_2924383_INS [dm6]	G	GGG	2.738e^-4	1	INTRON lilli
2L	3505690	2L_3505690_SNP [dm3] 2L_3505690_SNP [dm6]	G	A	2.740e^-4	1	INTRON tim	TF binding site BDTNP1_TFBS_twi
X	4677452	X_4677452_SNP [dm3] X_4783419_SNP [dm6]	A	G	2.754e^-4	1	UPSTREAM CG15471 & 1 other INTERGENIC
3R	10615260	3R_10615260_SNP [dm3] 3R_14789538_SNP [dm6]	A	T	2.755e^-4	1	INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8290469	2R_8290469_SNP [dm3] 2R_12402964_SNP [dm6]	C	T	2.756e^-4	1	INTRON Cpr49Ae
2R	10655100	2R_10655100_SNP [dm3] 2R_14767595_SNP [dm6]	A	G	2.765e^-4	1	INTRON Spred
3R	17269743	3R_17269743_SNP [dm3] 3R_21444021_SNP [dm6]	C	T	2.767e^-4	1	INTRON lbe	TF binding site mE1_TFBS_sens
2R	18153554	2R_18153554_SNP [dm3] 2R_22266049_SNP [dm6]	T	C	2.780e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7351151	2L_7351151_SNP [dm3] 2L_7351151_SNP [dm6]	T	A	2.788e^-4	1	INTRON Wnt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12646932	3R_12646932_SNP [dm3] 3R_16821210_SNP [dm6]	G	A	2.799e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3505697	2L_3505697_SNP [dm3] 2L_3505697_SNP [dm6]	G	A	2.801e^-4	1	INTRON tim	TF binding site BDTNP1_TFBS_twi
3R	19899652	3R_19899652_DEL [dm3] 3R_24073930_DEL [dm6]	ACA	A	2.807e^-4	1	INTRON 4EHP
2L	8150796	2L_8150796_SNP [dm3] 2L_8150796_SNP [dm6]	T	C	2.810e^-4	1	INTRON CG8552 & 1 other
2L	519996	2L_519996_SNP [dm3] 2L_519996_SNP [dm6]	G	C	2.816e^-4	1	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	11771250	X_11771250_SNP [dm3] X_11877217_SNP [dm6]	G	A	2.818e^-4	1	UPSTREAM CG10352 DOWNSTREAM CG10353 INTERGENIC
3R	27636196	3R_27636196_SNP [dm3] 3R_31810474_SNP [dm6]	A	T	2.826e^-4	1	UTR_3_PRIME FeCH UPSTREAM CG11576	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27133583	3R_27133583_SNP [dm3] 3R_31307861_SNP [dm6]	T	C	2.833e^-4	1	INTERGENIC
3R	6627102	3R_6627102_SNP [dm3] 3R_10801380_SNP [dm6]	A	G	2.836e^-4	1	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22201531	3R_22201531_SNP [dm3] 3R_26375809_SNP [dm6]	A	G	2.841e^-4	1	INTERGENIC
2R	16694771	2R_16694771_SNP [dm3] 2R_20807266_SNP [dm6]	A	T	2.842e^-4	1	INTERGENIC
2R	12928837	2R_12928837_SNP [dm3] 2R_17041332_SNP [dm6]	G	A	2.842e^-4	1	SYNONYMOUS_CODING RhoGEF2 EXON CR45145
3L	12719937	3L_12719937_SNP [dm3] 3L_12726837_SNP [dm6]	T	C	2.854e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16880283	2L_16880283_SNP [dm3] 2L_16880283_SNP [dm6]	C	T	2.869e^-4	1	UPSTREAM CG32832 & 1 other INTRON CG31743 & 1 other
2R	6685134	2R_6685134_SNP [dm3] 2R_10797629_SNP [dm6]	G	A	2.889e^-4	1	INTRON CG33144
2L	7472321	2L_7472321_SNP [dm3] 2L_7472321_SNP [dm6]	A	G	2.896e^-4	1	UTR_3_PRIME CG6055 DOWNSTREAM Ziz
2R	8946384	2R_8946384_SNP [dm3] 2R_13058879_SNP [dm6]	A	G	2.900e^-4	1	SPLICE_SITE_REGION Drl-2 INTRON Drl-2
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	2.903e^-4	1	INTERGENIC
3R	13920073	3R_13920073_SNP [dm3] 3R_18094351_SNP [dm6]	A	G	2.916e^-4	1	INTRON sr
3R	13920050	3R_13920050_SNP [dm3] 3R_18094328_SNP [dm6]	A	T	2.922e^-4	1	INTRON sr
2R	3598176	2R_3598176_SNP [dm3] 2R_7710671_SNP [dm6]	T	A	2.923e^-4	1	UPSTREAM mir-4909 INTRON CG1941
2R	18753527	2R_18753527_SNP [dm3] 2R_22866004_SNP [dm6]	A	T	2.933e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7821666	3R_7821666_SNP [dm3] 3R_11995944_SNP [dm6]	T	C	2.938e^-4	1	NON_SYNONYMOUS_CODING Tk	TF binding site mE1_TFBS_chinmo
2L	483204	2L_483204_SNP [dm3] 2L_483204_SNP [dm6]	A	G	2.952e^-4	1	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	11429034	2R_11429034_INS [dm3] 2R_15541529_INS [dm6]	A	AA	2.964e^-4	1	UTR_5_PRIME Vha36-1 UPSTREAM CG8187	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8507039	2R_8507039_SNP [dm3] 2R_12619534_SNP [dm6]	C	T	2.970e^-4	1	UTR_3_PRIME CG45086 & 1 other DOWNSTREAM Galphaq	TF binding site mE1_TFBS_zfh1
2L	13945721	2L_13945721_SNP [dm3] 2L_13945721_SNP [dm6]	C	G	2.980e^-4	1	SYNONYMOUS_CODING CG16884 INTRON Ance-3	TF binding site mE1_TFBS_cad
3R	25298614	3R_25298614_SNP [dm3] 3R_29472892_SNP [dm6]	C	A	3.004e^-4	1	INTRON Ptp99A
3L	3760276	3L_3760276_SNP [dm3] 3L_3760276_SNP [dm6]	G	T	3.011e^-4	1	INTRON CG32264
2R	11679992	2R_11679992_SNP [dm3] 2R_15792487_SNP [dm6]	T	C	3.017e^-4	1	INTRON Zasp52
2L	3527008	2L_3527008_SNP [dm3] 2L_3527008_SNP [dm6]	T	C	3.041e^-4	1	SYNONYMOUS_CODING CG8852 DOWNSTREAM Spindly	TF binding site mE1_TFBS_HSA
2L	2794747	2L_2794747_SNP [dm3] 2L_2794747_SNP [dm6]	A	T	3.045e^-4	1	INTRON Syt1
X	13370262	X_13370262_SNP [dm3] X_13476229_SNP [dm6]	T	C	3.061e^-4	1	INTRON Neto
3R	13920024	3R_13920024_SNP [dm3] 3R_18094302_SNP [dm6]	G	T	3.062e^-4	1	INTRON sr
X	12681257	X_12681257_SNP [dm3] X_12787224_SNP [dm6]	A	G	3.063e^-4	1	UTR_3_PRIME Pde9
3L	5284639	3L_5284639_SNP [dm3] 3L_5291539_SNP [dm6]	T	C	3.065e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16599758	2L_16599758_SNP [dm3] 2L_16599758_SNP [dm6]	T	A	3.084e^-4	1	INTRON CG42389
X	9910180	X_9910180_SNP [dm3] X_10016147_SNP [dm6]	T	A	3.085e^-4	1	UPSTREAM Cht6 INTERGENIC
2R	15591923	2R_15591923_SNP [dm3] 2R_19704418_SNP [dm6]	T	G	3.086e^-4	1	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3L	22083238	3L_22083238_INS [dm3] 3L_22090138_INS [dm6]	T	TGGG	3.090e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13737139	3L_13737139_SNP [dm3] 3L_13744039_SNP [dm6]	C	T	3.098e^-4	1	INTRON bru-3
2L	13603469	2L_13603469_SNP [dm3] 2L_13603469_SNP [dm6]	T	C	3.100e^-4	1	INTRON kuz
3R	14167247	3R_14167247_SNP [dm3] 3R_18341525_SNP [dm6]	A	G	3.103e^-4	1	INTRON CG15803
3R	10212242	3R_10212242_SNP [dm3] 3R_14386520_SNP [dm6]	G	A	3.107e^-4	1	INTERGENIC
2L	14049360	2L_14049360_SNP [dm3] 2L_14049360_SNP [dm6]	C	T	3.111e^-4	1	DOWNSTREAM NimC4 INTRON nAChRalpha5
3L	10311665	3L_10311665_SNP [dm3] 3L_10318565_SNP [dm6]	T	A	3.112e^-4	1	INTERGENIC
2R	9258685	2R_9258685_SNP [dm3] 2R_13371180_SNP [dm6]	A	G	3.140e^-4	1	INTERGENIC
3R	26276589	3R_26276589_SNP [dm3] 3R_30450867_SNP [dm6]	T	C	3.149e^-4	1	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26803267	3R_26803267_INS [dm3] 3R_30977545_INS [dm6]	A	AA	3.168e^-4	1	INTRON 5-HT7
2R	6435578	2R_6435578_SNP [dm3] 2R_10548073_SNP [dm6]	G	A	3.175e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3505712	2L_3505712_SNP [dm3] 2L_3505712_SNP [dm6]	A	T	3.183e^-4	1	INTRON tim	TF binding site BDTNP1_TFBS_twi
3R	12646945	3R_12646945_SNP [dm3] 3R_16821223_SNP [dm6]	A	G	3.185e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13920092	3R_13920092_INS [dm3] 3R_18094370_INS [dm6]	T	TAATCATTTTGAT...	3.188e^-4	1	INTRON sr
2L	1253643	2L_1253643_SNP [dm3] 2L_1253643_SNP [dm6]	T	C	3.189e^-4	1	INTERGENIC
2R	12782631	2R_12782631_SNP [dm3] 2R_16895126_SNP [dm6]	C	G	3.201e^-4	1	DOWNSTREAM mir-990 INTRON CG8910
2R	8292667	2R_8292667_SNP [dm3] 2R_12405162_SNP [dm6]	G	T	3.234e^-4	1	UPSTREAM Cpr49Af DOWNSTREAM Cpr49Ae INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10884050	3R_10884050_DEL [dm3] 3R_15058328_DEL [dm6]	CG	C	3.237e^-4	1	INTRON dpr9
3R	10884056	3R_10884056_SNP [dm3] 3R_15058334_SNP [dm6]	T	C	3.237e^-4	1	INTRON dpr9
3R	10884059	3R_10884059_SNP [dm3] 3R_15058337_SNP [dm6]	C	T	3.237e^-4	1	INTRON dpr9
3R	10884066	3R_10884066_MNP [dm3] 3R_15058344_MNP [dm6]	ACT	GTA	3.237e^-4	1	INTRON dpr9
X	16163522	X_16163522_SNP [dm3] X_16269489_SNP [dm6]	C	A	3.245e^-4	1	INTRON kat80
2R	2501096	2R_2501096_SNP [dm3] 2R_6613591_SNP [dm6]	A	G	3.247e^-4	1	UPSTREAM jing INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	3450516	X_3450516_INS [dm3] X_3556483_INS [dm6]	T	TGTCTTCTTA	3.251e^-4	1	INTRON CG32791
3L	13346094	3L_13346094_SNP [dm3] 3L_13352994_SNP [dm6]	C	T	3.251e^-4	1	SYNONYMOUS_CODING CG17687
3R	9538145	3R_9538145_SNP [dm3] 3R_13712423_SNP [dm6]	T	G	3.260e^-4	1	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC
2R	7952589	2R_7952589_SNP [dm3] 2R_12065084_SNP [dm6]	A	G	3.272e^-4	1	INTRON CG8888
3L	6681860	3L_6681860_SNP [dm3] 3L_6688760_SNP [dm6]	A	C	3.281e^-4	1	DOWNSTREAM SP1173 INTERGENIC
X	11033032	X_11033032_SNP [dm3] X_11138999_SNP [dm6]	A	C	3.290e^-4	1	UTR_3_PRIME CG18292 UPSTREAM CR44054 DOWNSTREAM CG32667	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12786535	2R_12786535_DEL [dm3] 2R_16899030_DEL [dm6]	TT	T	3.301e^-4	1	INTRON inaC	TF binding site mE1_TFBS_sbb
3R	11818876	3R_11818876_SNP [dm3] 3R_15993154_SNP [dm6]	C	G	3.319e^-4	1	UTR_5_PRIME srp UPSTREAM srp EXON CR44133	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	8117971	2L_8117971_SNP [dm3] 2L_8117971_SNP [dm6]	C	T	3.325e^-4	1	SYNONYMOUS_CODING mon2
X	18420492	X_18420492_SNP [dm3] X_18526459_SNP [dm6]	A	G	3.329e^-4	1	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13345764	3L_13345764_SNP [dm3] 3L_13352664_SNP [dm6]	A	G	3.329e^-4	1	SYNONYMOUS_CODING CG17687
3L	19338964	3L_19338964_SNP [dm3] 3L_19345864_SNP [dm6]	G	A	3.350e^-4	1	INTRON CG32206
2L	4028244	2L_4028244_SNP [dm3] 2L_4028244_SNP [dm6]	A	T	3.353e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	11373223	2L_11373223_SNP [dm3] 2L_11373223_SNP [dm6]	A	G	3.362e^-4	1	UTR_3_PRIME salr	TF binding site mE1_TFBS_cad
3L	13190902	3L_13190902_SNP [dm3] 3L_13197802_SNP [dm6]	G	T	3.362e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
3L	11030508	3L_11030508_SNP [dm3] 3L_11037408_SNP [dm6]	A	T	3.374e^-4	1	SYNONYMOUS_CODING CG43693
3L	15470406	3L_15470406_SNP [dm3] 3L_15477306_SNP [dm6]	T	A	3.378e^-4	1	INTERGENIC
3R	23396396	3R_23396396_DEL [dm3] 3R_27570674_DEL [dm6]	TGCTA	T	3.387e^-4	1	INTRON wdb	TF binding site BDTNP1_TFBS_da
3R	7996902	3R_7996902_DEL [dm3] 3R_12171180_DEL [dm6]	TA	T	3.387e^-4	1	INTERGENIC
3R	9866418	3R_9866418_SNP [dm3] 3R_14040696_SNP [dm6]	T	C	3.393e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8288559	2R_8288559_SNP [dm3] 2R_12401054_SNP [dm6]	A	T	3.400e^-4	1	INTERGENIC
3L	15470348	3L_15470348_SNP [dm3] 3L_15477248_SNP [dm6]	T	G	3.422e^-4	1	INTERGENIC
3R	24221035	3R_24221035_SNP [dm3] 3R_28395313_SNP [dm6]	G	A	3.423e^-4	1	INTERGENIC
X	15429119	X_15429119_SNP [dm3] X_15535086_SNP [dm6]	C	T	3.429e^-4	1	INTRON Ac13E
2R	8616196	2R_8616196_SNP [dm3] 2R_12728691_SNP [dm6]	C	T	3.436e^-4	1	INTRON CG42663
3R	13644278	3R_13644278_DEL [dm3] 3R_17818556_DEL [dm6]	CTC	C	3.440e^-4	1	INTRON tinc
X	12680524	X_12680524_SNP [dm3] X_12786491_SNP [dm6]	G	T	3.444e^-4	1	UTR_3_PRIME Pde9
2R	17149181	2R_17149181_SNP [dm3] 2R_21261676_SNP [dm6]	A	G	3.447e^-4	1	INTRON Rgk3
3R	10884069	3R_10884069_DEL [dm3] 3R_15058347_DEL [dm6]	TTTCTA	T	3.451e^-4	1	INTRON dpr9
3R	7776198	3R_7776198_SNP [dm3] 3R_11950476_SNP [dm6]	C	A	3.456e^-4	1	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10982360	X_10982360_SNP [dm3] X_11088327_SNP [dm6]	T	A	3.465e^-4	1	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
X	13641839	X_13641839_SNP [dm3] X_13747806_SNP [dm6]	C	T	3.468e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7706521	2R_7706521_SNP [dm3] 2R_11819016_SNP [dm6]	A	G	3.470e^-4	1	INTERGENIC
2L	8508772	2L_8508772_SNP [dm3] 2L_8508772_SNP [dm6]	A	T	3.476e^-4	1	DOWNSTREAM CG13096 INTERGENIC
2R	19399160	2R_19399160_SNP [dm3] 2R_23511637_SNP [dm6]	G	A	3.480e^-4	1	SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2704709	X_2704709_SNP [dm3] X_2810676_SNP [dm6]	G	A	3.488e^-4	1	NON_SYNONYMOUS_CODING CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14120433	3R_14120433_SNP [dm3] 3R_18294711_SNP [dm6]	G	A	3.495e^-4	1	UTR_5_PRIME l_3_05822 INTRON l_3_05822
3L	10256721	3L_10256721_SNP [dm3] 3L_10263621_SNP [dm6]	C	A	3.499e^-4	1	DOWNSTREAM can INTERGENIC
3L	6299887	3L_6299887_SNP [dm3] 3L_6306787_SNP [dm6]	A	C	3.505e^-4	1	DOWNSTREAM CR45113 INTERGENIC
3R	13874288	3R_13874288_SNP [dm3] 3R_18048566_SNP [dm6]	A	T	3.511e^-4	1	UTR_5_PRIME htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13919989	3R_13919989_DEL [dm3] 3R_18094267_DEL [dm6]	AAATCTAAAG	T	3.518e^-4	1	INTRON sr
X	16163527	X_16163527_SNP [dm3] X_16269494_SNP [dm6]	C	T	3.523e^-4	1	INTRON kat80
2L	905612	2L_905612_SNP [dm3] 2L_905612_SNP [dm6]	C	T	3.525e^-4	1	INTERGENIC
3R	25297612	3R_25297612_SNP [dm3] 3R_29471890_SNP [dm6]	G	A	3.527e^-4	1	NON_SYNONYMOUS_CODING Ptp99A INTRON Ptp99A
2L	3470706	2L_3470706_SNP [dm3] 2L_3470706_SNP [dm6]	C	G	3.553e^-4	1	UPSTREAM CG3238 INTRON CG31776	TF binding site mE1_TFBS_cad
3R	27271947	3R_27271947_SNP [dm3] 3R_31446225_SNP [dm6]	T	A	3.556e^-4	1	INTRON Gprk2
2L	1720150	2L_1720150_SNP [dm3] 2L_1720150_SNP [dm6]	G	A	3.560e^-4	1	INTRON Rim2
2R	9154877	2R_9154877_SNP [dm3] 2R_13267372_SNP [dm6]	T	G	3.562e^-4	1	DOWNSTREAM Dh31-R INTERGENIC
X	12285985	X_12285985_SNP [dm3] X_12391952_SNP [dm6]	A	G	3.596e^-4	1	INTERGENIC
2R	14992028	2R_14992028_SNP [dm3] 2R_19104523_SNP [dm6]	T	C	3.596e^-4	1	INTRON 5-HT1A
2R	8321391	2R_8321391_SNP [dm3] 2R_12433886_SNP [dm6]	T	G	3.597e^-4	1	INTRON DUBAI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11380355	2L_11380355_SNP [dm3] 2L_11380355_SNP [dm6]	T	A	3.604e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	8568835	3L_8568835_SNP [dm3] 3L_8575735_SNP [dm6]	A	G	3.615e^-4	1	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	8568838	3L_8568838_SNP [dm3] 3L_8575738_SNP [dm6]	T	C	3.615e^-4	1	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8509107	2L_8509107_SNP [dm3] 2L_8509107_SNP [dm6]	G	C	3.617e^-4	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096
3L	19862038	3L_19862038_SNP [dm3] 3L_19868938_SNP [dm6]	C	G	3.619e^-4	1	INTRON Rab8
3R	22201500	3R_22201500_SNP [dm3] 3R_26375778_SNP [dm6]	A	G	3.623e^-4	1	INTERGENIC
3R	4621618	3R_4621618_SNP [dm3] 3R_8795896_SNP [dm6]	T	C	3.625e^-4	1	SYNONYMOUS_CODING Ir85a INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16665080	X_16665080_SNP [dm3] X_16771047_SNP [dm6]	A	G	3.631e^-4	1	INTRON if
3R	27511790	3R_27511790_SNP [dm3] 3R_31686068_SNP [dm6]	A	G	3.638e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2589528	X_2589528_SNP [dm3] X_2695495_SNP [dm6]	A	C	3.648e^-4	1	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8517014	2R_8517014_SNP [dm3] 2R_12629509_SNP [dm6]	T	C	3.650e^-4	1	DOWNSTREAM CG17760 INTRON muskelin
2R	8192674	2R_8192674_DEL [dm3] 2R_12305169_DEL [dm6]	TC	G	3.652e^-4	1	INTRON SIP2	TF binding site mE1_TFBS_inv
3L	4033562	3L_4033562_SNP [dm3] 3L_4033562_SNP [dm6]	C	T	3.655e^-4	1	SYNONYMOUS_CODING Gr64d UTR_5_PRIME Gr64e UPSTREAM Gr64e DOWNSTREAM CR45042
3L	17113062	3L_17113062_SNP [dm3] 3L_17119962_SNP [dm6]	T	G	3.656e^-4	1	INTRON Rbp6
3R	10884076	3R_10884076_SNP [dm3] 3R_15058354_SNP [dm6]	G	T	3.656e^-4	1	INTRON dpr9
2R	936048	2R_936048_SNP [dm3] 2R_5048543_SNP [dm6]	C	A	3.673e^-4	1	INTERGENIC	transposable element FlyBase
3R	10884053	3R_10884053_SNP [dm3] 3R_15058331_SNP [dm6]	G	T	3.682e^-4	1	INTRON dpr9
X	7001372	X_7001372_SNP [dm3] X_7107339_SNP [dm6]	G	A	3.687e^-4	1	UTR_3_PRIME fz4 DOWNSTREAM CG8300
2R	8290485	2R_8290485_SNP [dm3] 2R_12402980_SNP [dm6]	C	A	3.692e^-4	1	INTRON Cpr49Ae	TF binding site mE1_TFBS_sens
2R	15013687	2R_15013687_SNP [dm3] 2R_19126182_SNP [dm6]	A	C	3.701e^-4	1	START_GAINED CG15117 UTR_5_PRIME CG15117 UPSTREAM CG15117 INTRON CG15117	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	6142126	2R_6142126_SNP [dm3] 2R_10254621_SNP [dm6]	T	C	3.709e^-4	1	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad
3R	23488261	3R_23488261_SNP [dm3] 3R_27662539_SNP [dm6]	C	G	3.710e^-4	1	INTRON unc80
3R	20334502	3R_20334502_SNP [dm3] 3R_24508780_SNP [dm6]	A	C	3.714e^-4	1	DOWNSTREAM nAChRbeta2 INTERGENIC
X	16848748	X_16848748_DEL [dm3] X_16954715_DEL [dm6]	TT	T	3.722e^-4	1	INTRON RhoGAP15B
3R	7805837	3R_7805837_DEL [dm3] 3R_11980115_DEL [dm6]	TA	T	3.730e^-4	1	DOWNSTREAM CG12224 INTRON CG18547	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	27642682	3R_27642682_INS [dm3] 3R_31816960_INS [dm6]	G	GTCAAGTTG	3.733e^-4	1	INTRON RhoGAP100F
2R	15591343	2R_15591343_SNP [dm3] 2R_19703838_SNP [dm6]	G	T	3.738e^-4	1	UTR_5_PRIME Obp56d UPSTREAM Obp56d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15240281	3L_15240281_SNP [dm3] 3L_15247181_SNP [dm6]	T	C	3.743e^-4	1	INTERGENIC
2L	2794768	2L_2794768_SNP [dm3] 2L_2794768_SNP [dm6]	G	A	3.748e^-4	1	INTRON Syt1
3R	5196331	3R_5196331_SNP [dm3] 3R_9370609_SNP [dm6]	A	T	3.748e^-4	1	INTRON FER
2R	20386221	2R_20386221_SNP [dm3] 2R_24498698_SNP [dm6]	A	G	3.758e^-4	1	DOWNSTREAM Ssl & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13920065	3R_13920065_SNP [dm3] 3R_18094343_SNP [dm6]	T	A	3.778e^-4	1	INTRON sr
X	1360970	X_1360970_SNP [dm3] X_1466937_SNP [dm6]	A	T	3.779e^-4	1	UPSTREAM O-fut2 & 2 others INTRON CG14777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	905621	2L_905621_SNP [dm3] 2L_905621_SNP [dm6]	C	A	3.789e^-4	1	INTERGENIC
3R	7663081	3R_7663081_SNP [dm3] 3R_11837359_SNP [dm6]	T	C	3.792e^-4	1	INTRON CG6959
2R	19385130	2R_19385130_SNP [dm3] 2R_23497607_SNP [dm6]	T	A	3.798e^-4	1	INTERGENIC
3R	6458797	3R_6458797_SNP [dm3] 3R_10633075_SNP [dm6]	A	G	3.800e^-4	1	INTRON hth	TF binding site mE1_TFBS_cad
3L	14206930	3L_14206930_SNP [dm3] 3L_14213830_SNP [dm6]	C	T	3.824e^-4	1	INTRON nuf
2R	19451384	2R_19451384_INS [dm3] 2R_23563861_INS [dm6]	T	AATC	3.825e^-4	1	UTR_3_PRIME Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25143703	3R_25143703_SNP [dm3] 3R_29317981_SNP [dm6]	C	T	3.833e^-4	1	INTRON Cnx99A
2R	13165538	2R_13165538_SNP [dm3] 2R_17278033_SNP [dm6]	C	A	3.833e^-4	1	INTRON mbl
3L	18116370	3L_18116370_SNP [dm3] 3L_18123270_SNP [dm6]	T	A	3.838e^-4	1	INTERGENIC
2L	395381	2L_395381_SNP [dm3] 2L_395381_SNP [dm6]	T	G	3.839e^-4	1	UPSTREAM CR43718 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10378975	3L_10378975_DEL [dm3] 3L_10385875_DEL [dm6]	AA	A	3.841e^-4	1	UPSTREAM CR45245 INTERGENIC
3L	1323202	3L_1323202_SNP [dm3] 3L_1323202_SNP [dm6]	T	C	3.842e^-4	1	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19669145	3L_19669145_SNP [dm3] 3L_19676045_SNP [dm6]	G	A	3.842e^-4	1	INTERGENIC
3L	20153373	3L_20153373_SNP [dm3] 3L_20160273_SNP [dm6]	G	A	3.857e^-4	1	INTRON CG42674
3L	11667311	3L_11667311_SNP [dm3] 3L_11674211_SNP [dm6]	C	T	3.860e^-4	1	INTRON CG32085	TF binding site mE1_TFBS_cad
X	19923264	X_19923264_SNP [dm3] X_20029231_SNP [dm6]	C	T	3.865e^-4	1	INTRON Dop2R
X	16163520	X_16163520_SNP [dm3] X_16269487_SNP [dm6]	G	A	3.871e^-4	1	INTRON kat80
2L	8973158	2L_8973158_SNP [dm3] 2L_8973158_SNP [dm6]	A	G	3.886e^-4	1	INTRON CG9541
3R	12005304	3R_12005304_SNP [dm3] 3R_16179582_SNP [dm6]	G	A	3.893e^-4	1	SYNONYMOUS_CODING CG8925
3R	11968928	3R_11968928_SNP [dm3] 3R_16143206_SNP [dm6]	T	A	3.898e^-4	1	INTRON Sb
3R	2350758	3R_2350758_SNP [dm3] 3R_6525036_SNP [dm6]	T	A	3.913e^-4	1	INTERGENIC
3R	11658889	3R_11658889_SNP [dm3] 3R_15833167_SNP [dm6]	G	T	3.915e^-4	1	NON_SYNONYMOUS_CODING CG43318 UPSTREAM rec DOWNSTREAM CG43317	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24151587	3R_24151587_SNP [dm3] 3R_28325865_SNP [dm6]	G	A	3.934e^-4	1	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Trl
X	13370287	X_13370287_SNP [dm3] X_13476254_SNP [dm6]	T	C	3.939e^-4	1	INTRON Neto
2L	11377272	2L_11377272_SNP [dm3] 2L_11377272_SNP [dm6]	G	C	3.941e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	23288211	3R_23288211_SNP [dm3] 3R_27462489_SNP [dm6]	T	A	3.943e^-4	1	INTERGENIC
X	10317901	X_10317901_SNP [dm3] X_10423868_SNP [dm6]	C	G	3.949e^-4	1	INTRON CG32683
X	19272124	X_19272124_SNP [dm3] X_19378091_SNP [dm6]	A	C	3.958e^-4	1	INTRON kek5
2L	2229213	2L_2229213_SNP [dm3] 2L_2229213_SNP [dm6]	C	T	3.959e^-4	1	INTRON rti
3L	15470443	3L_15470443_SNP [dm3] 3L_15477343_SNP [dm6]	G	T	3.968e^-4	1	INTERGENIC
2R	7500217	2R_7500217_SNP [dm3] 2R_11612712_SNP [dm6]	T	C	3.974e^-4	1	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	18096391	3L_18096391_SNP [dm3] 3L_18103291_SNP [dm6]	A	G	3.979e^-4	1	INTRON CG13698
2L	3531246	2L_3531246_SNP [dm3] 2L_3531246_SNP [dm6]	C	A	3.983e^-4	1	SPLICE_SITE_REGION Che-13 UPSTREAM Spindly INTRON Che-13
X	11351208	X_11351208_SNP [dm3] X_11457175_SNP [dm6]	C	T	4.000e^-4	1	SYNONYMOUS_CODING HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17259289	3L_17259289_SNP [dm3] 3L_17266189_SNP [dm6]	C	A	4.014e^-4	1	INTERGENIC
2R	13264654	2R_13264654_SNP [dm3] 2R_17377149_SNP [dm6]	A	G	4.015e^-4	1	UTR_3_PRIME mbl
3R	20987396	3R_20987396_SNP [dm3] 3R_25161674_SNP [dm6]	C	T	4.016e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	13438961	2L_13438961_SNP [dm3] 2L_13438961_SNP [dm6]	A	G	4.017e^-4	1	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
X	18889567	X_18889567_SNP [dm3] X_18995534_SNP [dm6]	T	C	4.031e^-4	1	INTRON CG43759
3L	17113013	3L_17113013_SNP [dm3] 3L_17119913_SNP [dm6]	T	G	4.039e^-4	1	INTRON Rbp6
2L	6888912	2L_6888912_DEL [dm3] 2L_6888912_DEL [dm6]	AAAGA	A	4.045e^-4	1	INTRON Nlg2
3L	7319033	3L_7319033_SNP [dm3] 3L_7325933_SNP [dm6]	C	T	4.049e^-4	1	DOWNSTREAM CG8602 INTRON Rint1	TF binding site mE1_TFBS_chinmo
X	2373051	X_2373051_SNP [dm3] X_2479018_SNP [dm6]	C	T	4.057e^-4	1	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3L	13190816	3L_13190816_SNP [dm3] 3L_13197716_SNP [dm6]	T	A	4.059e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
3R	7795653	3R_7795653_SNP [dm3] 3R_11969931_SNP [dm6]	C	G	4.071e^-4	1	INTRON GC1
X	2614061	X_2614061_SNP [dm3] X_2720028_SNP [dm6]	T	C	4.073e^-4	1	UPSTREAM fs_1_Yb INTRON CG2701	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18479136	2R_18479136_INS [dm3] 2R_22591631_INS [dm6]	A	AA	4.074e^-4	1	INTRON dnr1
X	2374513	X_2374513_SNP [dm3] X_2480480_SNP [dm6]	G	T	4.080e^-4	1	UTR_3_PRIME trol INTRON trol
X	8642438	X_8642438_SNP [dm3] X_8748405_SNP [dm6]	C	T	4.080e^-4	1	INTERGENIC
3L	11034817	3L_11034817_SNP [dm3] 3L_11041717_SNP [dm6]	A	C	4.088e^-4	1	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	15470413	3L_15470413_INS [dm3] 3L_15477313_INS [dm6]	T	TT	4.102e^-4	1	INTERGENIC
3L	7799243	3L_7799243_SNP [dm3] 3L_7806143_SNP [dm6]	T	G	4.109e^-4	1	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	9868187	X_9868187_SNP [dm3] X_9974154_SNP [dm6]	A	G	4.118e^-4	1	INTRON CG43386
3R	12329232	3R_12329232_SNP [dm3] 3R_16503510_SNP [dm6]	T	G	4.120e^-4	1	INTRON CG42342	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6458776	3R_6458776_SNP [dm3] 3R_10633054_SNP [dm6]	G	A	4.121e^-4	1	INTRON hth	TF binding site mE1_TFBS_cad
2L	17155638	2L_17155638_SNP [dm3] 2L_17155638_SNP [dm6]	T	A	4.122e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5600754	X_5600754_DEL [dm3] X_5706721_DEL [dm6]	AACTTGAAAACCTA...	A	4.134e^-4	1	INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	26192974	3R_26192974_SNP [dm3] 3R_30367252_SNP [dm6]	A	T	4.134e^-4	1	UTR_3_PRIME hdc
3L	18096973	3L_18096973_SNP [dm3] 3L_18103873_SNP [dm6]	G	A	4.139e^-4	1	INTRON CG13698
3L	20697682	3L_20697682_SNP [dm3] 3L_20704582_SNP [dm6]	C	A	4.140e^-4	1	INTERGENIC
3R	23893633	3R_23893633_SNP [dm3] 3R_28067911_SNP [dm6]	G	T	4.152e^-4	1	INTRON CG34362
3R	7663104	3R_7663104_SNP [dm3] 3R_11837382_SNP [dm6]	C	A	4.156e^-4	1	INTRON CG6959
3R	7832197	3R_7832197_SNP [dm3] 3R_12006475_SNP [dm6]	C	T	4.158e^-4	1	INTERGENIC
3L	1531617	3L_1531617_SNP [dm3] 3L_1531617_SNP [dm6]	G	A	4.163e^-4	1	SYNONYMOUS_CODING CG12090 UPSTREAM Ir62a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17843006	3R_17843006_SNP [dm3] 3R_22017284_SNP [dm6]	G	A	4.164e^-4	1	INTRON CG6439	TF binding site mE1_TFBS_sens
2R	8695872	2R_8695872_SNP [dm3] 2R_12808367_SNP [dm6]	C	A	4.164e^-4	1	DOWNSTREAM CG17580 INTERGENIC
2L	4166886	2L_4166886_SNP [dm3] 2L_4166886_SNP [dm6]	G	C	4.167e^-4	1	UPSTREAM Or24a INTERGENIC
3R	12646904	3R_12646904_INS [dm3] 3R_16821182_INS [dm6]	A	AA	4.170e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24629952	3R_24629952_SNP [dm3] 3R_28804230_SNP [dm6]	G	T	4.170e^-4	1	INTERGENIC
2R	20218005	2R_20218005_SNP [dm3] 2R_24330482_SNP [dm6]	G	A	4.186e^-4	1	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15591208	2R_15591208_SNP [dm3] 2R_19703703_SNP [dm6]	A	G	4.188e^-4	1	SPLICE_SITE_REGION Obp56d SYNONYMOUS_CODING Obp56d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14193060	3L_14193060_SNP [dm3] 3L_14199960_SNP [dm6]	C	T	4.191e^-4	1	UTR_5_PRIME nuf	TF binding site mE1_TFBS_HSA
3L	15470343	3L_15470343_SNP [dm3] 3L_15477243_SNP [dm6]	A	T	4.202e^-4	1	INTERGENIC
2R	18406712	2R_18406712_SNP [dm3] 2R_22519207_SNP [dm6]	A	C	4.208e^-4	1	INTRON px
3L	7799176	3L_7799176_SNP [dm3] 3L_7806076_SNP [dm6]	T	C	4.210e^-4	1	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	7819380	3R_7819380_SNP [dm3] 3R_11993658_SNP [dm6]	G	T	4.213e^-4	1	UPSTREAM mfas DOWNSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7458116	2R_7458116_SNP [dm3] 2R_11570611_SNP [dm6]	C	G	4.216e^-4	1	INTERGENIC
3R	1898879	3R_1898879_SNP [dm3] 3R_6073157_SNP [dm6]	C	G	4.220e^-4	1	INTERGENIC
3L	2862452	3L_2862452_SNP [dm3] 3L_2862452_SNP [dm6]	T	C	4.252e^-4	1	INTRON CG43444
X	19923296	X_19923296_INS [dm3] X_20029263_INS [dm6]	C	CC	4.252e^-4	1	INTRON Dop2R
2R	18049389	2R_18049389_SNP [dm3] 2R_22161884_SNP [dm6]	A	T	4.255e^-4	1	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18196835	2R_18196835_SNP [dm3] 2R_22309330_SNP [dm6]	T	G	4.274e^-4	1	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26165100	3R_26165100_SNP [dm3] 3R_30339378_SNP [dm6]	A	T	4.280e^-4	1	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2794748	2L_2794748_SNP [dm3] 2L_2794748_SNP [dm6]	T	C	4.284e^-4	1	INTRON Syt1
2L	11901582	2L_11901582_MNP [dm3] 2L_11901582_MNP [dm6]	CCT	TAA	4.286e^-4	1	INTRON Pde1c
2L	6973732	2L_6973732_SNP [dm3] 2L_6973732_SNP [dm6]	A	T	4.297e^-4	1	DOWNSTREAM CR43142 INTRON uif	TF binding site mE1_TFBS_chinmo
3R	23882683	3R_23882683_SNP [dm3] 3R_28056961_SNP [dm6]	A	G	4.298e^-4	1	INTRON CG34362
2L	902775	2L_902775_SNP [dm3] 2L_902775_SNP [dm6]	C	T	4.306e^-4	1	INTERGENIC
2L	4697675	2L_4697675_SNP [dm3] 2L_4697675_SNP [dm6]	T	C	4.336e^-4	1	INTRON CG34351
3L	10051839	3L_10051839_SNP [dm3] 3L_10058739_SNP [dm6]	C	G	4.337e^-4	1	INTRON dpr6
3L	8830916	3L_8830916_SNP [dm3] 3L_8837816_SNP [dm6]	G	A	4.348e^-4	1	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	7833133	3R_7833133_SNP [dm3] 3R_12007411_SNP [dm6]	A	G	4.352e^-4	1	DOWNSTREAM KLHL18 INTERGENIC
2L	9180416	2L_9180416_SNP [dm3] 2L_9180416_SNP [dm6]	A	T	4.353e^-4	1	INTRON tai
3L	6299902	3L_6299902_SNP [dm3] 3L_6306802_SNP [dm6]	T	A	4.383e^-4	1	DOWNSTREAM CR45113 INTERGENIC
X	14017279	X_14017279_SNP [dm3] X_14123246_SNP [dm6]	G	C	4.404e^-4	1	INTERGENIC
3L	11003036	3L_11003036_SNP [dm3] 3L_11009936_SNP [dm6]	C	T	4.411e^-4	1	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
3R	7832191	3R_7832191_SNP [dm3] 3R_12006469_SNP [dm6]	G	A	4.414e^-4	1	UPSTREAM Tk INTERGENIC
X	5458443	X_5458443_DEL [dm3] X_5564410_DEL [dm6]	TA	T	4.431e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10051861	3L_10051861_SNP [dm3] 3L_10058761_SNP [dm6]	G	T	4.436e^-4	1	INTRON dpr6
2L	10907713	2L_10907713_SNP [dm3] 2L_10907713_SNP [dm6]	T	A	4.446e^-4	1	NON_SYNONYMOUS_CODING CG7309
2L	7631756	2L_7631756_SNP [dm3] 2L_7631756_SNP [dm6]	G	T	4.447e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	18234200	2R_18234200_SNP [dm3] 2R_22346695_SNP [dm6]	C	A	4.458e^-4	1	UTR_5_PRIME Liprin-gamma INTRON Liprin-gamma
2R	13972388	2R_13972388_SNP [dm3] 2R_18084883_SNP [dm6]	T	C	4.461e^-4	1	INTRON CG34386
3R	9538131	3R_9538131_SNP [dm3] 3R_13712409_SNP [dm6]	T	G	4.464e^-4	1	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC	transposable element FlyBase
X	15491571	X_15491571_SNP [dm3] X_15597538_SNP [dm6]	G	T	4.466e^-4	1	INTERGENIC
3R	24016475	3R_24016475_SNP [dm3] 3R_28190753_SNP [dm6]	G	A	4.476e^-4	1	INTRON CG34354
2L	14057964	2L_14057964_SNP [dm3] 2L_14057964_SNP [dm6]	C	T	4.529e^-4	1	INTRON nAChRalpha5
3R	21676960	3R_21676960_SNP [dm3] 3R_25851238_SNP [dm6]	T	C	4.529e^-4	1	UTR_5_PRIME CG14545 UPSTREAM CG5886	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	22446229	3R_22446229_SNP [dm3] 3R_26620507_SNP [dm6]	C	A	4.532e^-4	1	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13641759	X_13641759_SNP [dm3] X_13747726_SNP [dm6]	T	A	4.534e^-4	1	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4481973	3L_4481973_SNP [dm3] 3L_4481973_SNP [dm6]	G	T	4.550e^-4	1	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
2R	15215054	2R_15215054_SNP [dm3] 2R_19327549_SNP [dm6]	T	C	4.563e^-4	1	INTRON Rgk1
2L	8308876	2L_8308876_SNP [dm3] 2L_8308876_SNP [dm6]	G	T	4.572e^-4	1	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	8109904	X_8109904_SNP [dm3] X_8215871_SNP [dm6]	T	C	4.574e^-4	1	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16848773	X_16848773_INS [dm3] X_16954740_INS [dm6]	T	TT	4.579e^-4	1	SPLICE_SITE_REGION RhoGAP15B INTRON RhoGAP15B
3L	8567735	3L_8567735_SNP [dm3] 3L_8574635_SNP [dm6]	T	C	4.589e^-4	1	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad
2L	6310752	2L_6310752_SNP [dm3] 2L_6310752_SNP [dm6]	A	G	4.629e^-4	1	INTRON Ddr
2R	13169731	2R_13169731_SNP [dm3] 2R_17282226_SNP [dm6]	T	A	4.634e^-4	1	INTRON mbl
3R	23483967	3R_23483967_SNP [dm3] 3R_27658245_SNP [dm6]	G	A	4.661e^-4	1	INTRON Mlc1	TF binding site mE1_TFBS_inv
3R	21010001	3R_21010001_SNP [dm3] 3R_25184279_SNP [dm6]	G	A	4.663e^-4	1	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5478291	2L_5478291_SNP [dm3] 2L_5478291_SNP [dm6]	C	T	4.667e^-4	1	INTERGENIC
3L	11034637	3L_11034637_SNP [dm3] 3L_11041537_SNP [dm6]	G	T	4.669e^-4	1	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	15159248	X_15159248_SNP [dm3] X_15265215_SNP [dm6]	G	A	4.677e^-4	1	INTERGENIC
3R	17240671	3R_17240671_SNP [dm3] 3R_21414949_SNP [dm6]	T	A	4.682e^-4	1	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	11029778	3L_11029778_SNP [dm3] 3L_11036678_SNP [dm6]	C	T	4.683e^-4	1	UTR_3_PRIME CG43693 DOWNSTREAM CR44547
3R	9538175	3R_9538175_DEL [dm3] 3R_13712453_DEL [dm6]	TAA	GG	4.689e^-4	1	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC
3R	22320996	3R_22320996_SNP [dm3] 3R_26495274_SNP [dm6]	C	T	4.690e^-4	1	INTRON plum
3R	12712004	3R_12712004_SNP [dm3] 3R_16886282_SNP [dm6]	C	A	4.710e^-4	1	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	24245433	3R_24245433_SNP [dm3] 3R_28419711_SNP [dm6]	G	A	4.714e^-4	1	INTRON beat-VI
2L	1125826	2L_1125826_SNP [dm3] 2L_1125826_SNP [dm6]	A	T	4.736e^-4	1	INTRON Pino
3R	10412346	3R_10412346_SNP [dm3] 3R_14586624_SNP [dm6]	T	C	4.738e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13899843	2R_13899843_SNP [dm3] 2R_18012338_SNP [dm6]	C	G	4.742e^-4	1	INTERGENIC
2L	22042085	2L_22042085_SNP [dm3] 2L_22042085_SNP [dm6]	C	G	4.754e^-4	1	INTRON CG31601
3L	23925936	3L_23925936_SNP [dm3] 3L_23932836_SNP [dm6]	A	C	4.754e^-4	1	INTRON CG40470
2R	11158590	2R_11158590_SNP [dm3] 2R_15271085_SNP [dm6]	A	G	4.756e^-4	1	SYNONYMOUS_CODING Trpm
2R	13147911	2R_13147911_SNP [dm3] 2R_17260406_SNP [dm6]	C	T	4.762e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	2931643	2L_2931643_SNP [dm3] 2L_2931643_SNP [dm6]	C	A	4.784e^-4	1	INTRON lilli
3R	12672571	3R_12672571_SNP [dm3] 3R_16846849_SNP [dm6]	G	T	4.788e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8150795	2L_8150795_SNP [dm3] 2L_8150795_SNP [dm6]	G	A	4.795e^-4	1	INTRON CG8552 & 1 other
3L	5695371	3L_5695371_SNP [dm3] 3L_5702271_SNP [dm6]	C	T	4.807e^-4	1	INTRON sif
2R	7211481	2R_7211481_SNP [dm3] 2R_11323976_SNP [dm6]	T	G	4.813e^-4	1	UPSTREAM sha INTERGENIC
2L	12155239	2L_12155239_DEL [dm3] 2L_12155239_DEL [dm6]	AA	A	4.816e^-4	1	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7812530	3R_7812530_SNP [dm3] 3R_11986808_SNP [dm6]	A	T	4.817e^-4	1	INTRON mfas	TF binding site mE1_TFBS_cad
2L	16379210	2L_16379210_SNP [dm3] 2L_16379210_SNP [dm6]	A	C	4.824e^-4	1	INTERGENIC
X	21980775	X_21980775_SNP [dm3] X_22578939_SNP [dm6]	T	A	4.831e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7194274	3L_7194274_SNP [dm3] 3L_7201174_SNP [dm6]	T	C	4.836e^-4	1	INTERGENIC
3L	15688806	3L_15688806_SNP [dm3] 3L_15695706_SNP [dm6]	G	T	4.847e^-4	1	INTERGENIC
3R	24024933	3R_24024933_SNP [dm3] 3R_28199211_SNP [dm6]	G	A	4.848e^-4	1	INTRON CG34354
3R	22201477	3R_22201477_SNP [dm3] 3R_26375755_SNP [dm6]	A	C	4.852e^-4	1	INTERGENIC
2R	8275533	2R_8275533_SNP [dm3] 2R_12388028_SNP [dm6]	A	G	4.853e^-4	1	INTRON Cpr49Ac
3R	7139665	3R_7139665_SNP [dm3] 3R_11313943_SNP [dm6]	C	T	4.867e^-4	1	INTERGENIC
2L	7351160	2L_7351160_SNP [dm3] 2L_7351160_SNP [dm6]	A	G	4.869e^-4	1	INTRON Wnt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16865817	3L_16865817_SNP [dm3] 3L_16872717_SNP [dm6]	T	C	4.876e^-4	1	INTRON Lmpt
X	12782900	X_12782900_INS [dm3] X_12888867_INS [dm6]	T	TT	4.881e^-4	1	INTRON Pde9
3R	11658931	3R_11658931_SNP [dm3] 3R_15833209_SNP [dm6]	G	T	4.897e^-4	1	NON_SYNONYMOUS_CODING CG43318 UPSTREAM rec DOWNSTREAM CG43317	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13920041	3R_13920041_SNP [dm3] 3R_18094319_SNP [dm6]	C	T	4.912e^-4	1	INTRON sr
2R	17131019	2R_17131019_SNP [dm3] 2R_21243514_SNP [dm6]	C	T	4.914e^-4	1	INTRON ASPP
2R	18484195	2R_18484195_SNP [dm3] 2R_22596690_SNP [dm6]	T	C	4.919e^-4	1	UPSTREAM CG4269 DOWNSTREAM CG3927 EXON CR45328
3R	26196474	3R_26196474_SNP [dm3] 3R_30370752_SNP [dm6]	A	T	4.923e^-4	1	UTR_3_PRIME hdc
3L	13895812	3L_13895812_SNP [dm3] 3L_13902712_SNP [dm6]	C	T	4.931e^-4	1	UTR_5_PRIME dysc
3R	26165173	3R_26165173_SNP [dm3] 3R_30339451_SNP [dm6]	C	T	4.932e^-4	1	INTRON hdc	TF binding site BDTNP1_TFBS_twi
2L	3961337	2L_3961337_SNP [dm3] 2L_3961337_SNP [dm6]	T	G	4.945e^-4	1	INTRON fred
3R	26935968	3R_26935968_SNP [dm3] 3R_31110246_SNP [dm6]	T	A	4.955e^-4	1	INTERGENIC
X	2406835	X_2406835_SNP [dm3] X_2512802_SNP [dm6]	C	T	4.965e^-4	1	INTRON trol
3R	17843007	3R_17843007_SNP [dm3] 3R_22017285_SNP [dm6]	A	C	4.977e^-4	1	INTRON CG6439	TF binding site mE1_TFBS_sens
X	21981036	X_21981036_INS [dm3] X_22579200_INS [dm6]	T	TAT	4.985e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9336003	X_9336003_SNP [dm3] X_9441970_SNP [dm6]	C	T	4.990e^-4	1	INTRON mgl
3L	12022033	3L_12022033_SNP [dm3] 3L_12028933_SNP [dm6]	A	C	5.011e^-4	1	DOWNSTREAM CR43994 INTRON rols
3R	27647341	3R_27647341_SNP [dm3] 3R_31821619_SNP [dm6]	T	C	5.017e^-4	1	INTRON RhoGAP100F
3R	27653496	3R_27653496_INS [dm3] 3R_31827774_INS [dm6]	A	ATACAA	5.022e^-4	1	UTR_5_PRIME RhoGAP100F UPSTREAM RhoGAP100F INTRON RhoGAP100F
3R	10410985	3R_10410985_SNP [dm3] 3R_14585263_SNP [dm6]	A	T	5.063e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2R	5148784	2R_5148784_SNP [dm3] 2R_9261279_SNP [dm6]	G	T	5.067e^-4	1	NON_SYNONYMOUS_CODING CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12866731	X_12866731_SNP [dm3] X_12972698_SNP [dm6]	T	C	5.079e^-4	1	SYNONYMOUS_CODING CG15721 INTRON CR43636	TF binding site mE1_TFBS_sens
3L	13187415	3L_13187415_SNP [dm3] 3L_13194315_SNP [dm6]	G	A	5.080e^-4	1	INTERGENIC
3L	15488294	3L_15488294_SNP [dm3] 3L_15495194_SNP [dm6]	C	G	5.093e^-4	1	UPSTREAM CG12355 INTRON CG12355	TF binding site mE1_TFBS_Trl
2R	9485733	2R_9485733_SNP [dm3] 2R_13598228_SNP [dm6]	A	C	5.096e^-4	1	SYNONYMOUS_CODING S-Lap5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14655280	2R_14655280_SNP [dm3] 2R_18767775_SNP [dm6]	T	A	5.097e^-4	1	INTRON Mctp
2R	8853111	2R_8853111_SNP [dm3] 2R_12965606_SNP [dm6]	A	T	5.102e^-4	1	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12416531	3L_12416531_SNP [dm3] 3L_12423431_SNP [dm6]	G	T	5.106e^-4	1	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2467699	X_2467699_SNP [dm3] X_2573666_SNP [dm6]	T	C	5.106e^-4	1	INTRON Pdfr
3R	12676295	3R_12676295_SNP [dm3] 3R_16850573_SNP [dm6]	A	C	5.107e^-4	1	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21980550	2L_21980550_SNP [dm3] 2L_21980550_SNP [dm6]	C	A	5.127e^-4	1	DOWNSTREAM CG2528 INTERGENIC
X	6199010	X_6199010_SNP [dm3] X_6304977_SNP [dm6]	A	T	5.135e^-4	1	INTRON CG3823	TF binding site mE1_TFBS_HSA
3R	7829568	3R_7829568_SNP [dm3] 3R_12003846_SNP [dm6]	T	A	5.136e^-4	1	DOWNSTREAM Ect3 INTRON Tk
2R	17085211	2R_17085211_SNP [dm3] 2R_21197706_SNP [dm6]	G	T	5.139e^-4	1	SYNONYMOUS_CODING Lapsyn
3L	15470604	3L_15470604_SNP [dm3] 3L_15477504_SNP [dm6]	T	A	5.147e^-4	1	INTERGENIC
X	2917384	X_2917384_SNP [dm3] X_3023351_SNP [dm6]	A	G	5.149e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2R	7602922	2R_7602922_SNP [dm3] 2R_11715417_SNP [dm6]	T	A	5.152e^-4	1	INTRON pyr
X	19923104	X_19923104_SNP [dm3] X_20029071_SNP [dm6]	C	T	5.153e^-4	1	INTRON Dop2R
X	19923130	X_19923130_INS [dm3] X_20029097_INS [dm6]	T	TTGATAAATT	5.153e^-4	1	INTRON Dop2R
3L	11667317	3L_11667317_SNP [dm3] 3L_11674217_SNP [dm6]	A	G	5.154e^-4	1	INTRON CG32085	TF binding site mE1_TFBS_cad
X	8716476	X_8716476_SNP [dm3] X_8822443_SNP [dm6]	A	C	5.157e^-4	1	INTERGENIC
3L	17114338	3L_17114338_SNP [dm3] 3L_17121238_SNP [dm6]	G	C	5.165e^-4	1	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	15591180	2R_15591180_SNP [dm3] 2R_19703675_SNP [dm6]	T	C	5.167e^-4	1	INTRON Obp56d	TF binding site mE1_TFBS_HSA
X	4320664	X_4320664_SNP [dm3] X_4426631_SNP [dm6]	C	T	5.169e^-4	1	UPSTREAM bi INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9014433	2L_9014433_SNP [dm3] 2L_9014433_SNP [dm6]	T	A	5.188e^-4	1	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
3L	6818149	3L_6818149_SNP [dm3] 3L_6825049_SNP [dm6]	A	G	5.189e^-4	1	INTERGENIC
2L	8308825	2L_8308825_SNP [dm3] 2L_8308825_SNP [dm6]	C	T	5.198e^-4	1	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	15159335	X_15159335_SNP [dm3] X_15265302_SNP [dm6]	A	G	5.200e^-4	1	INTERGENIC
2R	12352487	2R_12352487_SNP [dm3] 2R_16464982_SNP [dm6]	T	A	5.203e^-4	1	INTERGENIC
2R	14868326	2R_14868326_SNP [dm3] 2R_18980821_SNP [dm6]	A	G	5.207e^-4	1	INTERGENIC
X	18420792	X_18420792_SNP [dm3] X_18526759_SNP [dm6]	G	T	5.207e^-4	1	DOWNSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_inv
3R	17253828	3R_17253828_SNP [dm3] 3R_21428106_SNP [dm6]	A	T	5.219e^-4	1	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	13751344	2R_13751344_SNP [dm3] 2R_17863839_SNP [dm6]	T	C	5.225e^-4	1	NON_SYNONYMOUS_CODING thr
3R	5966472	3R_5966472_INS [dm3] 3R_10140750_INS [dm6]	C	CATAATTCAA	5.237e^-4	1	UTR_3_PRIME TAF1B UPSTREAM tws	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5966476	3R_5966476_SNP [dm3] 3R_10140754_SNP [dm6]	T	A	5.237e^-4	1	UTR_3_PRIME TAF1B UPSTREAM tws	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18021503	2L_18021503_SNP [dm3] 2L_18021503_SNP [dm6]	T	C	5.237e^-4	1	INTRON rdo
3R	18002166	3R_18002166_SNP [dm3] 3R_22176444_SNP [dm6]	C	T	5.245e^-4	1	INTRON SKIP
3L	2865100	3L_2865100_SNP [dm3] 3L_2865100_SNP [dm6]	T	C	5.258e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8509146	2L_8509146_SNP [dm3] 2L_8509146_SNP [dm6]	G	A	5.261e^-4	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
2L	18343837	2L_18343837_SNP [dm3] 2L_18343837_SNP [dm6]	G	A	5.267e^-4	1	INTRON Fas3
2L	3514950	2L_3514950_INS [dm3] 2L_3514950_INS [dm6]	A	AA	5.273e^-4	1	UTR_5_PRIME CG17593 UPSTREAM CG33123
X	13315925	X_13315925_DEL [dm3] X_13421892_DEL [dm6]	AA	A	5.286e^-4	1	DOWNSTREAM Set2 INTERGENIC
3L	15470409	3L_15470409_SNP [dm3] 3L_15477309_SNP [dm6]	T	A	5.297e^-4	1	INTERGENIC
2L	9439257	2L_9439257_SNP [dm3] 2L_9439257_SNP [dm6]	T	C	5.301e^-4	1	DOWNSTREAM CG33723 INTRON numb
3R	4670861	3R_4670861_SNP [dm3] 3R_8845139_SNP [dm6]	G	T	5.302e^-4	1	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22489253	3R_22489253_SNP [dm3] 3R_26663531_SNP [dm6]	G	A	5.305e^-4	1	INTRON beat-VII
2R	15005231	2R_15005231_SNP [dm3] 2R_19117726_SNP [dm6]	G	A	5.311e^-4	1	INTRON 5-HT1A
3R	7868822	3R_7868822_SNP [dm3] 3R_12043100_SNP [dm6]	A	T	5.312e^-4	1	UTR_3_PRIME CG14736 DOWNSTREAM CG14736
3L	1335296	3L_1335296_DEL [dm3] 3L_1335296_DEL [dm6]	TGT	T	5.312e^-4	1	UTR_5_PRIME CG2211 UPSTREAM CG2211 INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2687331	X_2687331_SNP [dm3] X_2793298_SNP [dm6]	A	C	5.336e^-4	1	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9538183	3R_9538183_DEL [dm3] 3R_13712461_DEL [dm6]	AGT	A	5.340e^-4	1	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC
X	21292600	X_21292600_SNP [dm3] X_21421573_SNP [dm6]	A	T	5.343e^-4	1	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
2R	15591974	2R_15591974_DEL [dm3] 2R_19704469_DEL [dm6]	ATATA	T	5.348e^-4	1	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	10674918	2R_10674918_SNP [dm3] 2R_14787413_SNP [dm6]	G	A	5.350e^-4	1	INTRON kn
3L	8568662	3L_8568662_SNP [dm3] 3L_8575562_SNP [dm6]	T	C	5.351e^-4	1	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	15253140	3R_15253140_SNP [dm3] 3R_19427418_SNP [dm6]	T	G	5.353e^-4	1	INTRON CG31221
3L	20565135	3L_20565135_SNP [dm3] 3L_20572035_SNP [dm6]	A	T	5.359e^-4	1	INTERGENIC
2R	8529637	2R_8529637_SNP [dm3] 2R_12642132_SNP [dm6]	A	G	5.364e^-4	1	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
X	8892881	X_8892881_SNP [dm3] X_8998848_SNP [dm6]	T	C	5.364e^-4	1	INTRON rdgA & 1 other
3R	12646958	3R_12646958_DEL [dm3] 3R_16821236_DEL [dm6]	TAATA	T	5.365e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	2613686	X_2613686_SNP [dm3] X_2719653_SNP [dm6]	G	C	5.376e^-4	1	NON_SYNONYMOUS_CODING CG2701 UPSTREAM fs_1_Yb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	20182799	2R_20182799_SNP [dm3] 2R_24295276_SNP [dm6]	T	A	5.387e^-4	1	UPSTREAM CG3394 DOWNSTREAM mir-4985 INTRON CG3394	TF binding site mE1_TFBS_chinmo
3R	27639136	3R_27639136_SNP [dm3] 3R_31813414_SNP [dm6]	T	C	5.392e^-4	1	UTR_5_PRIME RhoGAP100F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27569848	3R_27569848_SNP [dm3] 3R_31744126_SNP [dm6]	A	G	5.414e^-4	1	UTR_3_PRIME CG1890 UPSTREAM CG1896 DOWNSTREAM Ef1alpha100E	TF binding site BDTNP1_TFBS_dl
3L	13190890	3L_13190890_SNP [dm3] 3L_13197790_SNP [dm6]	C	A	5.420e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
2L	8309389	2L_8309389_SNP [dm3] 2L_8309389_SNP [dm6]	C	A	5.429e^-4	1	SYNONYMOUS_CODING CG7818 DOWNSTREAM CG7810	TF binding site mE1_TFBS_sens
3R	9538190	3R_9538190_SNP [dm3] 3R_13712468_SNP [dm6]	T	A	5.429e^-4	1	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	21677327	3R_21677327_SNP [dm3] 3R_25851605_SNP [dm6]	T	C	5.432e^-4	1	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	8190253	2R_8190253_SNP [dm3] 2R_12302748_SNP [dm6]	C	G	5.435e^-4	1	UTR_3_PRIME SIP2 UPSTREAM CG8850
2L	5217929	2L_5217929_SNP [dm3] 2L_5217929_SNP [dm6]	C	T	5.443e^-4	1	UTR_5_PRIME TpnC25D UPSTREAM TpnC25D INTRON TpnC25D
2L	6888905	2L_6888905_SNP [dm3] 2L_6888905_SNP [dm6]	A	T	5.445e^-4	1	INTRON Nlg2
2L	660589	2L_660589_SNP [dm3] 2L_660589_SNP [dm6]	T	A	5.446e^-4	1	INTRON ds	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6627197	3R_6627197_SNP [dm3] 3R_10801475_SNP [dm6]	T	G	5.447e^-4	1	NON_SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	5697669	2L_5697669_SNP [dm3] 2L_5697669_SNP [dm6]	C	G	5.456e^-4	1	INTERGENIC
3L	3818796	3L_3818796_SNP [dm3] 3L_3818796_SNP [dm6]	A	G	5.476e^-4	1	START_GAINED enc UTR_5_PRIME enc DOWNSTREAM Scsalpha	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6626947	3R_6626947_SNP [dm3] 3R_10801225_SNP [dm6]	T	C	5.482e^-4	1	INTRON CG14692	TF binding site mE1_TFBS_kn
X	5041144	X_5041144_SNP [dm3] X_5147111_SNP [dm6]	G	A	5.484e^-4	1	INTRON rg & 1 other
3L	12579673	3L_12579673_SNP [dm3] 3L_12586573_SNP [dm6]	T	C	5.485e^-4	1	INTRON ara
2R	8853369	2R_8853369_SNP [dm3] 2R_12965864_SNP [dm6]	T	C	5.487e^-4	1	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18488298	3L_18488298_SNP [dm3] 3L_18495198_SNP [dm6]	A	T	5.488e^-4	1	INTRON AstC-R2
3R	26676542	3R_26676542_SNP [dm3] 3R_30850820_SNP [dm6]	G	A	5.490e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16865818	3L_16865818_SNP [dm3] 3L_16872718_SNP [dm6]	G	A	5.513e^-4	1	INTRON Lmpt
3L	466466	3L_466466_SNP [dm3] 3L_466466_SNP [dm6]	G	T	5.513e^-4	1	INTRON klar
2L	13937614	2L_13937614_SNP [dm3] 2L_13937614_SNP [dm6]	G	A	5.515e^-4	1	INTRON Ance-3
2L	17043106	2L_17043106_SNP [dm3] 2L_17043106_SNP [dm6]	G	T	5.520e^-4	1	EXON CR43802
2L	9512331	2L_9512331_SNP [dm3] 2L_9512331_SNP [dm6]	T	A	5.526e^-4	1	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	2702853	3R_2702853_SNP [dm3] 3R_6877131_SNP [dm6]	T	C	5.529e^-4	1	DOWNSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	520748	2L_520748_SNP [dm3] 2L_520748_SNP [dm6]	G	A	5.531e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	16116157	2R_16116157_SNP [dm3] 2R_20228652_SNP [dm6]	A	G	5.533e^-4	1	UPSTREAM tRNA:G3:56EFa INTERGENIC
X	16622784	X_16622784_SNP [dm3] X_16728751_SNP [dm6]	A	G	5.541e^-4	1	INTRON CG9634
X	5318417	X_5318417_SNP [dm3] X_5424384_SNP [dm6]	C	A	5.541e^-4	1	NON_SYNONYMOUS_CODING CG4165	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	11626637	2R_11626637_SNP [dm3] 2R_15739132_SNP [dm6]	G	T	5.561e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20184992	2R_20184992_SNP [dm3] 2R_24297469_SNP [dm6]	A	T	5.566e^-4	1	INTRON CG3394	TF binding site mE1_TFBS_chinmo
3R	26154547	3R_26154547_DEL [dm3] 3R_30328825_DEL [dm6]	AGAA	A	5.569e^-4	1	INTRON hdc
3L	19343057	3L_19343057_SNP [dm3] 3L_19349957_SNP [dm6]	A	G	5.579e^-4	1	INTRON CG32206
3R	22329588	3R_22329588_INS [dm3] 3R_26503866_INS [dm6]	T	TCAT	5.590e^-4	1	INTRON plum	TF binding site BDTNP1_TFBS_dl
3L	10788259	3L_10788259_SNP [dm3] 3L_10795159_SNP [dm6]	C	T	5.594e^-4	1	EXON CR44546
2L	17155543	2L_17155543_SNP [dm3] 2L_17155543_SNP [dm6]	T	G	5.596e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13896989	2L_13896989_SNP [dm3] 2L_13896989_SNP [dm6]	C	T	5.608e^-4	1	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
2R	13169733	2R_13169733_SNP [dm3] 2R_17282228_SNP [dm6]	G	A	5.617e^-4	1	INTRON mbl
2R	8265342	2R_8265342_SNP [dm3] 2R_12377837_SNP [dm6]	G	A	5.622e^-4	1	UPSTREAM Cpr49Ab DOWNSTREAM Cpr49Aa INTERGENIC
3R	26154503	3R_26154503_SNP [dm3] 3R_30328781_SNP [dm6]	T	C	5.625e^-4	1	INTRON hdc
3L	342764	3L_342764_SNP [dm3] 3L_342764_SNP [dm6]	C	T	5.628e^-4	1	DOWNSTREAM mth INTRON Ptpmeg & 1 other
X	12867107	X_12867107_SNP [dm3] X_12973074_SNP [dm6]	C	G	5.642e^-4	1	NON_SYNONYMOUS_CODING CG15721 DOWNSTREAM CR43152 EXON CR43636	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23448530	3R_23448530_SNP [dm3] 3R_27622808_SNP [dm6]	G	T	5.644e^-4	1	DOWNSTREAM CG5612 INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22321667	3R_22321667_SNP [dm3] 3R_26495945_SNP [dm6]	G	T	5.644e^-4	1	INTRON plum
3R	22321558	3R_22321558_SNP [dm3] 3R_26495836_SNP [dm6]	A	T	5.656e^-4	1	INTRON plum
3R	2643809	3R_2643809_SNP [dm3] 3R_6818087_SNP [dm6]	A	G	5.670e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20768294	2R_20768294_DEL [dm3] 2R_24880771_DEL [dm6]	GGACAGAGTTAG...	G	5.671e^-4	1	UTR_3_PRIME CG44247 UPSTREAM NKAIN DOWNSTREAM CR43466 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6766865	3L_6766865_SNP [dm3] 3L_6773765_SNP [dm6]	T	A	5.671e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	2685490	3R_2685490_SNP [dm3] 3R_6859768_SNP [dm6]	A	T	5.672e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	13735045	X_13735045_SNP [dm3] X_13841012_SNP [dm6]	G	A	5.672e^-4	1	INTRON AMPdeam
3R	18906861	3R_18906861_INS [dm3] 3R_23081139_INS [dm6]	T	TT	5.674e^-4	1	INTRON CG13830
2L	1244770	2L_1244770_SNP [dm3] 2L_1244770_SNP [dm6]	T	C	5.676e^-4	1	INTERGENIC
3L	13906045	3L_13906045_SNP [dm3] 3L_13912945_SNP [dm6]	A	G	5.679e^-4	1	INTRON Rgl
3R	20375181	3R_20375181_SNP [dm3] 3R_24549459_SNP [dm6]	G	T	5.682e^-4	1	INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19020666	3R_19020666_DEL [dm3] 3R_23194944_DEL [dm6]	GGA	G	5.688e^-4	1	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	12352530	2R_12352530_SNP [dm3] 2R_16465025_SNP [dm6]	T	A	5.691e^-4	1	INTERGENIC
3R	20686962	3R_20686962_SNP [dm3] 3R_24861240_SNP [dm6]	T	G	5.698e^-4	1	UPSTREAM CG13639 DOWNSTREAM CG13640 INTERGENIC
3R	21570422	3R_21570422_SNP [dm3] 3R_25744700_SNP [dm6]	G	A	5.699e^-4	1	SYNONYMOUS_CODING LpR1
3R	22329600	3R_22329600_SNP [dm3] 3R_26503878_SNP [dm6]	C	A	5.706e^-4	1	INTRON plum	TF binding site BDTNP1_TFBS_dl
3R	7804412	3R_7804412_SNP [dm3] 3R_11978690_SNP [dm6]	A	T	5.725e^-4	1	SYNONYMOUS_CODING CG18547 UPSTREAM CR44135	TF binding site mE1_TFBS_cad
2R	13790954	2R_13790954_SNP [dm3] 2R_17903449_SNP [dm6]	G	A	5.729e^-4	1	INTRON Elk
3R	25388791	3R_25388791_SNP [dm3] 3R_29563069_SNP [dm6]	G	T	5.729e^-4	1	INTRON Dr
3L	3239232	3L_3239232_SNP [dm3] 3L_3239232_SNP [dm6]	A	T	5.742e^-4	1	INTRON CG17746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	1883403	X_1883403_SNP [dm3] X_1989370_SNP [dm6]	C	T	5.750e^-4	1	INTRON Hr4	TF binding site mE1_TFBS_chinmo
X	12680740	X_12680740_SNP [dm3] X_12786707_SNP [dm6]	C	T	5.751e^-4	1	UTR_3_PRIME Pde9
3R	10884064	3R_10884064_SNP [dm3] 3R_15058342_SNP [dm6]	A	G	5.753e^-4	1	INTRON dpr9
3L	3588768	3L_3588768_SNP [dm3] 3L_3588768_SNP [dm6]	C	A	5.754e^-4	1	INTRON Eip63E
3L	3588769	3L_3588769_SNP [dm3] 3L_3588769_SNP [dm6]	A	C	5.754e^-4	1	INTRON Eip63E
2R	9144157	2R_9144157_SNP [dm3] 2R_13256652_SNP [dm6]	C	T	5.761e^-4	1	UTR_5_PRIME CG4716
3L	15470444	3L_15470444_SNP [dm3] 3L_15477344_SNP [dm6]	T	A	5.768e^-4	1	INTERGENIC
2L	2377885	2L_2377885_SNP [dm3] 2L_2377885_SNP [dm6]	T	C	5.779e^-4	1	SYNONYMOUS_CODING Atxn7	TF binding site mE1_TFBS_chinmo
3R	15785500	3R_15785500_INS [dm3] 3R_19959778_INS [dm6]	A	AA	5.784e^-4	1	INTRON Hs6st
2R	11679991	2R_11679991_SNP [dm3] 2R_15792486_SNP [dm6]	G	A	5.790e^-4	1	INTRON Zasp52
3R	19701564	3R_19701564_SNP [dm3] 3R_23875842_SNP [dm6]	G	C	5.804e^-4	1	INTRON Pli
3R	2628907	3R_2628907_SNP [dm3] 3R_6803185_SNP [dm6]	G	A	5.834e^-4	1	DOWNSTREAM Dfd INTERGENIC
3R	7870941	3R_7870941_SNP [dm3] 3R_12045219_SNP [dm6]	T	G	5.840e^-4	1	INTERGENIC
3L	1318568	3L_1318568_SNP [dm3] 3L_1318568_SNP [dm6]	A	T	5.854e^-4	1	UTR_5_PRIME Myo61F DOWNSTREAM CG9153
3L	10256557	3L_10256557_SNP [dm3] 3L_10263457_SNP [dm6]	A	G	5.882e^-4	1	DOWNSTREAM can INTERGENIC
3L	8219929	3L_8219929_SNP [dm3] 3L_8226829_SNP [dm6]	A	T	5.884e^-4	1	INTERGENIC
2R	9630693	2R_9630693_DEL [dm3] 2R_13743188_DEL [dm6]	AA	G	5.903e^-4	1	INTRON fas
X	21476522	X_21476522_DEL [dm3] X_21605495_DEL [dm6]	AACTTCAGAAA...	A	5.904e^-4	1	UPSTREAM CG14476 DOWNSTREAM CG17450 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4974706	3L_4974706_SNP [dm3] 3L_4974706_SNP [dm6]	G	C	5.912e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_hb
3L	4974707	3L_4974707_SNP [dm3] 3L_4974707_SNP [dm6]	T	G	5.912e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_hb
X	2686395	X_2686395_SNP [dm3] X_2792362_SNP [dm6]	A	T	5.913e^-4	1	SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22346461	3R_22346461_SNP [dm3] 3R_26520739_SNP [dm6]	T	G	5.918e^-4	1	INTRON plum EXON CR45226
3R	24025565	3R_24025565_SNP [dm3] 3R_28199843_SNP [dm6]	C	G	5.926e^-4	1	INTRON CG34354
X	8716477	X_8716477_SNP [dm3] X_8822444_SNP [dm6]	G	A	5.931e^-4	1	INTERGENIC
3L	1008051	3L_1008051_SNP [dm3] 3L_1008051_SNP [dm6]	G	C	5.935e^-4	1	UPSTREAM trio INTRON trio	TF binding site mE1_TFBS_inv
3L	281294	3L_281294_SNP [dm3] 3L_281294_SNP [dm6]	C	G	5.936e^-4	1	NON_SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_chinmo
2L	3524691	2L_3524691_SNP [dm3] 2L_3524691_SNP [dm6]	A	G	5.939e^-4	1	UPSTREAM Sr-CIV & 1 other INTERGENIC
X	13370229	X_13370229_INS [dm3] X_13476196_INS [dm6]	A	ATAAATTTGATCCGCACATA...	5.940e^-4	1	INTRON Neto
2L	17155780	2L_17155780_SNP [dm3] 2L_17155780_SNP [dm6]	T	C	5.941e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
3R	23882501	3R_23882501_SNP [dm3] 3R_28056779_SNP [dm6]	A	G	5.943e^-4	1	INTRON CG34362
3L	13280546	3L_13280546_DEL [dm3] 3L_13287446_DEL [dm6]	TCCT	T	5.945e^-4	1	UPSTREAM CR45753 INTERGENIC
2R	13966579	2R_13966579_SNP [dm3] 2R_18079074_SNP [dm6]	A	T	5.951e^-4	1	INTRON CG34386
2L	7546774	2L_7546774_SNP [dm3] 2L_7546774_SNP [dm6]	C	A	5.953e^-4	1	INTRON RapGAP1
2L	17531224	2L_17531224_SNP [dm3] 2L_17531224_SNP [dm6]	G	C	5.959e^-4	1	NON_SYNONYMOUS_CODING CG15145	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22329547	3R_22329547_SNP [dm3] 3R_26503825_SNP [dm6]	C	T	5.964e^-4	1	INTRON plum	TF binding site BDTNP1_TFBS_dl
3R	22329555	3R_22329555_SNP [dm3] 3R_26503833_SNP [dm6]	T	A	5.964e^-4	1	INTRON plum	TF binding site BDTNP1_TFBS_dl
2R	18703388	2R_18703388_SNP [dm3] 2R_22815883_SNP [dm6]	T	C	5.971e^-4	1	UTR_3_PRIME stl UPSTREAM CG30271	transposable element FlyBase
X	12569826	X_12569826_DEL [dm3] X_12675793_DEL [dm6]	TC	T	5.978e^-4	1	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
2R	12785961	2R_12785961_SNP [dm3] 2R_16898456_SNP [dm6]	C	T	5.983e^-4	1	UPSTREAM inaC INTERGENIC
2R	7616110	2R_7616110_SNP [dm3] 2R_11728605_SNP [dm6]	T	A	6.002e^-4	1	INTERGENIC
2R	4462030	2R_4462030_DEL [dm3] 2R_8574525_DEL [dm6]	CGGC	C	6.003e^-4	1	INTRON CG42326	TF binding site mE1_TFBS_cad
2L	1932644	2L_1932644_DEL [dm3] 2L_1932644_DEL [dm6]	AAATCCACGCCAA...	A	6.004e^-4	1	INTRON CG7337
2R	7817797	2R_7817797_SNP [dm3] 2R_11930292_SNP [dm6]	G	C	6.008e^-4	1	UPSTREAM CR44312 INTERGENIC
3R	6458160	3R_6458160_SNP [dm3] 3R_10632438_SNP [dm6]	G	C	6.008e^-4	1	INTRON hth	TF binding site mE1_TFBS_cad
3R	15373630	3R_15373630_SNP [dm3] 3R_19547908_SNP [dm6]	G	T	6.016e^-4	1	INTRON Dys
2R	975099	2R_975099_SNP [dm3] 2R_5087594_SNP [dm6]	G	A	6.026e^-4	1	INTERGENIC	transposable element FlyBase
3R	20524591	3R_20524591_SNP [dm3] 3R_24698869_SNP [dm6]	C	T	6.030e^-4	1	INTRON slo	TF binding site BDTNP1_TFBS_dl
2R	3861561	2R_3861561_SNP [dm3] 2R_7974056_SNP [dm6]	C	A	6.041e^-4	1	UTR_3_PRIME CSN4 DOWNSTREAM ACC
3R	20524605	3R_20524605_SNP [dm3] 3R_24698883_SNP [dm6]	A	G	6.062e^-4	1	INTRON slo	TF binding site BDTNP1_TFBS_dl
2R	8641655	2R_8641655_SNP [dm3] 2R_12754150_SNP [dm6]	G	A	6.068e^-4	1	INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	19343101	3L_19343101_SNP [dm3] 3L_19350001_SNP [dm6]	G	C	6.072e^-4	1	INTRON CG32206
3R	14937358	3R_14937358_SNP [dm3] 3R_19111636_SNP [dm6]	C	T	6.074e^-4	1	INTRON CG6040
3R	14937364	3R_14937364_SNP [dm3] 3R_19111642_SNP [dm6]	G	A	6.074e^-4	1	INTRON CG6040
3R	9537558	3R_9537558_SNP [dm3] 3R_13711836_SNP [dm6]	C	A	6.075e^-4	1	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19576332	2R_19576332_DEL [dm3] 2R_23688809_DEL [dm6]	CTG	A	6.081e^-4	1	DOWNSTREAM St3 INTRON Pal2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19916380	3L_19916380_SNP [dm3] 3L_19923280_SNP [dm6]	A	T	6.086e^-4	1	UTR_5_PRIME Su_z_12 UPSTREAM CG7770	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14447444	3R_14447444_INS [dm3] 3R_18621722_INS [dm6]	T	TT	6.088e^-4	1	UPSTREAM CG14304 INTRON qin
X	19923030	X_19923030_SNP [dm3] X_20028997_SNP [dm6]	T	C	6.131e^-4	1	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
3R	13250963	3R_13250963_SNP [dm3] 3R_17425241_SNP [dm6]	A	T	6.132e^-4	1	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14811096	2R_14811096_SNP [dm3] 2R_18923591_SNP [dm6]	C	T	6.138e^-4	1	INTRON sano
X	2400066	X_2400066_SNP [dm3] X_2506033_SNP [dm6]	C	T	6.151e^-4	1	UPSTREAM trol INTRON trol
2R	13239483	2R_13239483_SNP [dm3] 2R_17351978_SNP [dm6]	G	A	6.153e^-4	1	INTRON mbl
3L	4144201	3L_4144201_SNP [dm3] 3L_4144201_SNP [dm6]	C	A	6.157e^-4	1	INTRON CG32260
2L	3196085	2L_3196085_SNP [dm3] 2L_3196085_SNP [dm6]	T	G	6.160e^-4	1	INTRON CG34393
3L	15470386	3L_15470386_SNP [dm3] 3L_15477286_SNP [dm6]	C	A	6.179e^-4	1	INTERGENIC
3L	7194309	3L_7194309_SNP [dm3] 3L_7201209_SNP [dm6]	C	T	6.188e^-4	1	INTERGENIC
3R	9292849	3R_9292849_SNP [dm3] 3R_13467127_SNP [dm6]	T	C	6.193e^-4	1	INTERGENIC
2R	18594877	2R_18594877_SNP [dm3] 2R_22707372_SNP [dm6]	C	T	6.198e^-4	1	SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
3R	24527098	3R_24527098_SNP [dm3] 3R_28701376_SNP [dm6]	A	G	6.200e^-4	1	INTRON htt	TF binding site mE1_TFBS_cad
2R	13164490	2R_13164490_SNP [dm3] 2R_17276985_SNP [dm6]	G	C	6.202e^-4	1	INTRON mbl
3R	13296580	3R_13296580_SNP [dm3] 3R_17470858_SNP [dm6]	A	C	6.204e^-4	1	INTERGENIC
2L	4156669	2L_4156669_SNP [dm3] 2L_4156669_SNP [dm6]	A	G	6.210e^-4	1	INTERGENIC
3L	6137743	3L_6137743_SNP [dm3] 3L_6144643_SNP [dm6]	A	G	6.212e^-4	1	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3L	8567676	3L_8567676_SNP [dm3] 3L_8574576_SNP [dm6]	C	T	6.216e^-4	1	SYNONYMOUS_STOP CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad
3R	10390585	3R_10390585_SNP [dm3] 3R_14564863_SNP [dm6]	T	G	6.229e^-4	1	UPSTREAM CG8087 INTERGENIC	TF binding site mE1_TFBS_cad
2R	13147506	2R_13147506_SNP [dm3] 2R_17260001_SNP [dm6]	C	T	6.231e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	15470623	3L_15470623_INS [dm3] 3L_15477523_INS [dm6]	C	TTT	6.242e^-4	1	INTERGENIC
2R	6157525	2R_6157525_INS [dm3] 2R_10270020_INS [dm6]	A	AA	6.244e^-4	1	DOWNSTREAM CG12910 INTRON CAP
3R	25298814	3R_25298814_SNP [dm3] 3R_29473092_SNP [dm6]	A	C	6.245e^-4	1	INTRON Ptp99A
3R	2696114	3R_2696114_SNP [dm3] 3R_6870392_SNP [dm6]	T	A	6.253e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	15182901	2R_15182901_SNP [dm3] 2R_19295396_SNP [dm6]	C	T	6.262e^-4	1	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19923032	X_19923032_DEL [dm3] X_20028999_DEL [dm6]	TAATCAAAGTTC...	T	6.271e^-4	1	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
2L	16226088	2L_16226088_SNP [dm3] 2L_16226088_SNP [dm6]	T	C	6.273e^-4	1	INTERGENIC
2L	14897082	2L_14897082_SNP [dm3] 2L_14897082_SNP [dm6]	G	A	6.281e^-4	1	INTERGENIC
2L	2400523	2L_2400523_SNP [dm3] 2L_2400523_SNP [dm6]	A	C	6.287e^-4	1	UPSTREAM VGlut INTRON VGlut
X	2447639	X_2447639_SNP [dm3] X_2553606_SNP [dm6]	C	T	6.291e^-4	1	UPSTREAM Pdfr INTRON Pdfr
X	5092902	X_5092902_SNP [dm3] X_5198869_SNP [dm6]	A	T	6.292e^-4	1	INTRON rg & 1 other
2R	1963658	2R_1963658_SNP [dm3] 2R_6076153_SNP [dm6]	A	C	6.294e^-4	1	UPSTREAM CG7849 INTRON CG7845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11034816	3L_11034816_SNP [dm3] 3L_11041716_SNP [dm6]	G	A	6.303e^-4	1	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	18287723	2R_18287723_SNP [dm3] 2R_22400218_SNP [dm6]	G	A	6.304e^-4	1	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6817477	3L_6817477_INS [dm3] 3L_6824377_INS [dm6]	G	TC	6.313e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	6817480	3L_6817480_INS [dm3] 3L_6824380_INS [dm6]	G	GT	6.313e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	11605600	3L_11605600_SNP [dm3] 3L_11612500_SNP [dm6]	C	T	6.325e^-4	1	NON_SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	12053898	X_12053898_INS [dm3] X_12159865_INS [dm6]	C	CA	6.329e^-4	1	INTRON Ten-a
3L	15644117	3L_15644117_SNP [dm3] 3L_15651017_SNP [dm6]	G	A	6.331e^-4	1	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
2R	5555874	2R_5555874_SNP [dm3] 2R_9668369_SNP [dm6]	C	G	6.332e^-4	1	INTRON Mmp2
2R	15209122	2R_15209122_SNP [dm3] 2R_19321617_SNP [dm6]	T	C	6.341e^-4	1	INTRON Rgk1	TF binding site mE1_TFBS_inv
3R	20525597	3R_20525597_SNP [dm3] 3R_24699875_SNP [dm6]	A	C	6.347e^-4	1	INTRON slo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1114049	3L_1114049_INS [dm3] 3L_1114049_INS [dm6]	T	TG	6.355e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17566236	3R_17566236_SNP [dm3] 3R_21740514_SNP [dm6]	T	C	6.361e^-4	1	NON_SYNONYMOUS_CODING CG5849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20935820	X_20935820_SNP [dm3] X_21064793_SNP [dm6]	T	C	6.366e^-4	1	UPSTREAM CG32512 INTRON bves & 1 other
3L	15936958	3L_15936958_SNP [dm3] 3L_15943858_SNP [dm6]	G	T	6.370e^-4	1	INTRON Pka-C3
3R	27655554	3R_27655554_SNP [dm3] 3R_31829832_SNP [dm6]	A	G	6.374e^-4	1	INTRON RhoGAP100F
2R	20195624	2R_20195624_SNP [dm3] 2R_24308101_SNP [dm6]	C	T	6.381e^-4	1	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	14904790	2R_14904790_SNP [dm3] 2R_19017285_SNP [dm6]	G	T	6.383e^-4	1	INTERGENIC
3L	11848670	3L_11848670_INS [dm3] 3L_11855570_INS [dm6]	T	TGGCAAACGCCCAGCGT...	6.385e^-4	1	INTRON CG44837
2L	913942	2L_913942_SNP [dm3] 2L_913942_SNP [dm6]	T	A	6.386e^-4	1	UPSTREAM GluRIIC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19923147	X_19923147_SNP [dm3] X_20029114_SNP [dm6]	G	T	6.391e^-4	1	INTRON Dop2R
X	19923149	X_19923149_SNP [dm3] X_20029116_SNP [dm6]	G	A	6.391e^-4	1	INTRON Dop2R
X	19923151	X_19923151_INS [dm3] X_20029118_INS [dm6]	G	CTC	6.391e^-4	1	INTRON Dop2R
3L	721515	3L_721515_SNP [dm3] 3L_721515_SNP [dm6]	T	G	6.395e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14827092	2R_14827092_SNP [dm3] 2R_18939587_SNP [dm6]	T	C	6.426e^-4	1	INTRON sano
X	19923336	X_19923336_SNP [dm3] X_20029303_SNP [dm6]	T	C	6.437e^-4	1	INTRON Dop2R
X	11359954	X_11359954_SNP [dm3] X_11465921_SNP [dm6]	T	C	6.463e^-4	1	INTRON CG43155
3L	8844859	3L_8844859_SNP [dm3] 3L_8851759_SNP [dm6]	G	C	6.468e^-4	1	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	6888927	2L_6888927_SNP [dm3] 2L_6888927_SNP [dm6]	T	A	6.469e^-4	1	INTRON Nlg2
3R	18374092	3R_18374092_SNP [dm3] 3R_22548370_SNP [dm6]	G	A	6.472e^-4	1	UPSTREAM AdipoR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3402071	2L_3402071_SNP [dm3] 2L_3402071_SNP [dm6]	G	C	6.472e^-4	1	INTERGENIC
X	5051620	X_5051620_SNP [dm3] X_5157587_SNP [dm6]	A	T	6.473e^-4	1	INTRON rg & 1 other
2R	20291930	2R_20291930_SNP [dm3] 2R_24404407_SNP [dm6]	G	A	6.474e^-4	1	UTR_3_PRIME Rpn8 DOWNSTREAM SerT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19032323	3R_19032323_SNP [dm3] 3R_23206601_SNP [dm6]	A	C	6.476e^-4	1	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	903859	3L_903859_SNP [dm3] 3L_903859_SNP [dm6]	C	A	6.478e^-4	1	DOWNSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10540393	2L_10540393_SNP [dm3] 2L_10540393_SNP [dm6]	G	A	6.499e^-4	1	INTERGENIC
3R	25296079	3R_25296079_SNP [dm3] 3R_29470357_SNP [dm6]	A	C	6.499e^-4	1	INTRON Ptp99A
2L	9808993	2L_9808993_SNP [dm3] 2L_9808993_SNP [dm6]	C	A	6.506e^-4	1	INTRON nAChRalpha6
3L	13345374	3L_13345374_SNP [dm3] 3L_13352274_SNP [dm6]	T	C	6.512e^-4	1	SYNONYMOUS_CODING CG17687
2R	8208969	2R_8208969_SNP [dm3] 2R_12321464_SNP [dm6]	C	T	6.514e^-4	1	NON_SYNONYMOUS_CODING CG13163 UPSTREAM CR44316	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18081384	2R_18081384_SNP [dm3] 2R_22193879_SNP [dm6]	T	A	6.515e^-4	1	UPSTREAM Swim INTRON Swim
X	21310402	X_21310402_DEL [dm3] X_21439375_DEL [dm6]	AGTGC	T	6.525e^-4	1	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2R	16092880	2R_16092880_SNP [dm3] 2R_20205375_SNP [dm6]	A	G	6.526e^-4	1	INTERGENIC
3R	20325661	3R_20325661_SNP [dm3] 3R_24499939_SNP [dm6]	T	A	6.526e^-4	1	INTERGENIC
2L	13129522	2L_13129522_SNP [dm3] 2L_13129522_SNP [dm6]	T	C	6.529e^-4	1	INTERGENIC
2R	7602940	2R_7602940_SNP [dm3] 2R_11715435_SNP [dm6]	G	T	6.531e^-4	1	INTRON pyr
3R	25140619	3R_25140619_SNP [dm3] 3R_29314897_SNP [dm6]	G	A	6.556e^-4	1	DOWNSTREAM Cnx99A INTERGENIC
2R	9607501	2R_9607501_SNP [dm3] 2R_13719996_SNP [dm6]	C	T	6.570e^-4	1	INTRON fas
X	13370275	X_13370275_SNP [dm3] X_13476242_SNP [dm6]	T	A	6.576e^-4	1	INTRON Neto
X	12680736	X_12680736_INS [dm3] X_12786703_INS [dm6]	G	GAG	6.586e^-4	1	UTR_3_PRIME Pde9
3R	8429392	3R_8429392_SNP [dm3] 3R_12603670_SNP [dm6]	C	T	6.588e^-4	1	INTERGENIC
2L	5426878	2L_5426878_SNP [dm3] 2L_5426878_SNP [dm6]	A	G	6.596e^-4	1	INTERGENIC
3L	8318678	3L_8318678_SNP [dm3] 3L_8325578_SNP [dm6]	T	C	6.599e^-4	1	UPSTREAM CG34461 INTERGENIC
2L	14518600	2L_14518600_SNP [dm3] 2L_14518600_SNP [dm6]	G	A	6.603e^-4	1	UPSTREAM tRNA:G3:35Bb DOWNSTREAM tRNA:G3:35Bc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	5284553	3L_5284553_SNP [dm3] 3L_5291453_SNP [dm6]	G	A	6.618e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7117404	3R_7117404_SNP [dm3] 3R_11291682_SNP [dm6]	A	T	6.618e^-4	1	INTRON CR31386
3L	4144249	3L_4144249_SNP [dm3] 3L_4144249_SNP [dm6]	G	C	6.619e^-4	1	INTRON CG32260
3R	20524608	3R_20524608_SNP [dm3] 3R_24698886_SNP [dm6]	T	C	6.621e^-4	1	INTRON slo	TF binding site BDTNP1_TFBS_dl
X	18468653	X_18468653_SNP [dm3] X_18574620_SNP [dm6]	A	C	6.626e^-4	1	INTERGENIC
2L	2166324	2L_2166324_SNP [dm3] 2L_2166324_SNP [dm6]	A	G	6.628e^-4	1	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22544778	3R_22544778_SNP [dm3] 3R_26719056_SNP [dm6]	G	A	6.629e^-4	1	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23421659	3R_23421659_SNP [dm3] 3R_27595937_SNP [dm6]	C	T	6.637e^-4	1	UTR_5_PRIME CG5639	TF binding site mE1_TFBS_inv
2R	12202336	2R_12202336_SNP [dm3] 2R_16314831_SNP [dm6]	A	C	6.668e^-4	1	SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_cad
3R	22418721	3R_22418721_SNP [dm3] 3R_26592999_SNP [dm6]	T	G	6.668e^-4	1	INTRON scrib
3R	21499788	3R_21499788_SNP [dm3] 3R_25674066_SNP [dm6]	A	G	6.671e^-4	1	INTRON Lgr3
2L	3746321	2L_3746321_SNP [dm3] 2L_3746321_SNP [dm6]	C	T	6.675e^-4	1	SYNONYMOUS_CODING CG10019	TF binding site mE1_TFBS_chinmo
2R	6435616	2R_6435616_SNP [dm3] 2R_10548111_SNP [dm6]	T	A	6.693e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10410988	3R_10410988_SNP [dm3] 3R_14585266_SNP [dm6]	C	A	6.695e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	4031804	3L_4031804_SNP [dm3] 3L_4031804_SNP [dm6]	G	A	6.712e^-4	1	UPSTREAM Gr64d & 1 other INTRON Gr64b & 1 other
3R	27563528	3R_27563528_SNP [dm3] 3R_31737806_SNP [dm6]	G	C	6.714e^-4	1	SYNONYMOUS_CODING CG11563 UPSTREAM CstF-50 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4037731	2L_4037731_SNP [dm3] 2L_4037731_SNP [dm6]	G	T	6.718e^-4	1	INTRON ed
3L	12711006	3L_12711006_SNP [dm3] 3L_12717906_SNP [dm6]	C	T	6.718e^-4	1	INTERGENIC
3L	1918979	3L_1918979_SNP [dm3] 3L_1918979_SNP [dm6]	T	C	6.755e^-4	1	INTERGENIC
3L	1919054	3L_1919054_SNP [dm3] 3L_1919054_SNP [dm6]	A	C	6.755e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1919185	3L_1919185_SNP [dm3] 3L_1919185_SNP [dm6]	T	C	6.755e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23488288	3R_23488288_INS [dm3] 3R_27662566_INS [dm6]	A	AA	6.758e^-4	1	INTRON unc80
3R	15143799	3R_15143799_SNP [dm3] 3R_19318077_SNP [dm6]	T	G	6.759e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9435821	3R_9435821_SNP [dm3] 3R_13610099_SNP [dm6]	C	T	6.766e^-4	1	UPSTREAM CG9759 INTERGENIC
2L	11439134	2L_11439134_SNP [dm3] 2L_11439134_SNP [dm6]	G	A	6.770e^-4	1	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25509435	3R_25509435_SNP [dm3] 3R_29683713_SNP [dm6]	A	G	6.784e^-4	1	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
2L	4156586	2L_4156586_SNP [dm3] 2L_4156586_SNP [dm6]	T	G	6.789e^-4	1	INTERGENIC
3R	11968930	3R_11968930_SNP [dm3] 3R_16143208_SNP [dm6]	A	T	6.790e^-4	1	INTRON Sb
3L	10453809	3L_10453809_SNP [dm3] 3L_10460709_SNP [dm6]	A	C	6.801e^-4	1	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
3L	10485290	3L_10485290_SNP [dm3] 3L_10492190_SNP [dm6]	A	G	6.801e^-4	1	SYNONYMOUS_CODING S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2643583	3R_2643583_SNP [dm3] 3R_6817861_SNP [dm6]	A	G	6.811e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	14915751	X_14915751_SNP [dm3] X_15021718_SNP [dm6]	T	C	6.816e^-4	1	INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25962470	3R_25962470_SNP [dm3] 3R_30136748_SNP [dm6]	A	G	6.827e^-4	1	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9800156	2R_9800156_DEL [dm3] 2R_13912651_DEL [dm6]	AA	A	6.828e^-4	1	INTRON shot	TF binding site BDTNP1_TFBS_twi
3R	7803838	3R_7803838_SNP [dm3] 3R_11978116_SNP [dm6]	T	C	6.840e^-4	1	UPSTREAM CG10005 DOWNSTREAM CG18547 EXON CR44135
X	4678467	X_4678467_SNP [dm3] X_4784434_SNP [dm6]	G	A	6.843e^-4	1	SYNONYMOUS_CODING CG6978
3L	5283821	3L_5283821_SNP [dm3] 3L_5290721_SNP [dm6]	G	C	6.849e^-4	1	INTERGENIC
2R	8245103	2R_8245103_SNP [dm3] 2R_12357598_SNP [dm6]	G	C	6.859e^-4	1	SYNONYMOUS_CODING CG30049
2R	15287068	2R_15287068_SNP [dm3] 2R_19399563_SNP [dm6]	G	A	6.885e^-4	1	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
3L	19343079	3L_19343079_SNP [dm3] 3L_19349979_SNP [dm6]	T	G	6.885e^-4	1	INTRON CG32206
3L	2149315	3L_2149315_SNP [dm3] 3L_2149315_SNP [dm6]	A	T	6.885e^-4	1	INTRON zormin
X	2613715	X_2613715_SNP [dm3] X_2719682_SNP [dm6]	T	A	6.886e^-4	1	NON_SYNONYMOUS_CODING CG2701 UPSTREAM fs_1_Yb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19576286	2R_19576286_SNP [dm3] 2R_23688763_SNP [dm6]	C	T	6.888e^-4	1	DOWNSTREAM St3 INTRON Pal2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18227849	2L_18227849_SNP [dm3] 2L_18227849_SNP [dm6]	C	T	6.893e^-4	1	INTRON CG42750
X	16266046	X_16266046_SNP [dm3] X_16372013_SNP [dm6]	T	A	6.895e^-4	1	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15470394	3L_15470394_SNP [dm3] 3L_15477294_SNP [dm6]	G	A	6.898e^-4	1	INTERGENIC
3R	12646956	3R_12646956_SNP [dm3] 3R_16821234_SNP [dm6]	G	T	6.904e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	13603232	X_13603232_SNP [dm3] X_13709199_SNP [dm6]	A	C	6.912e^-4	1	INTRON CG9940 & 1 other	TF binding site mE1_TFBS_inv
3L	8725466	3L_8725466_SNP [dm3] 3L_8732366_SNP [dm6]	A	C	6.921e^-4	1	DOWNSTREAM Prm INTRON Cp16	TF binding site mE1_TFBS_chinmo
2L	11460344	2L_11460344_SNP [dm3] 2L_11460344_SNP [dm6]	T	G	6.922e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15535979	2R_15535979_SNP [dm3] 2R_19648474_SNP [dm6]	A	G	6.923e^-4	1	UPSTREAM CG15905 INTERGENIC
X	16106418	X_16106418_SNP [dm3] X_16212385_SNP [dm6]	T	A	6.932e^-4	1	SYNONYMOUS_CODING disco	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22324623	3R_22324623_SNP [dm3] 3R_26498901_SNP [dm6]	C	A	6.947e^-4	1	INTRON plum
3R	22571652	3R_22571652_SNP [dm3] 3R_26745930_SNP [dm6]	C	T	6.954e^-4	1	INTERGENIC
3R	21564531	3R_21564531_SNP [dm3] 3R_25738809_SNP [dm6]	A	C	6.956e^-4	1	INTRON LpR2	TF binding site mE1_TFBS_Trl
X	10143299	X_10143299_SNP [dm3] X_10249266_SNP [dm6]	G	C	6.971e^-4	1	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25201144	3R_25201144_SNP [dm3] 3R_29375422_SNP [dm6]	G	T	6.981e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	4144236	3L_4144236_SNP [dm3] 3L_4144236_SNP [dm6]	C	T	6.985e^-4	1	INTRON CG32260
2L	4209357	2L_4209357_SNP [dm3] 2L_4209357_SNP [dm6]	G	T	7.030e^-4	1	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	6371570	2R_6371570_SNP [dm3] 2R_10484065_SNP [dm6]	T	C	7.035e^-4	1	SYNONYMOUS_CODING lola & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10453730	3L_10453730_SNP [dm3] 3L_10460630_SNP [dm6]	T	C	7.039e^-4	1	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16163524	X_16163524_SNP [dm3] X_16269491_SNP [dm6]	T	A	7.043e^-4	1	INTRON kat80
X	16564139	X_16564139_SNP [dm3] X_16670106_SNP [dm6]	G	A	7.048e^-4	1	SYNONYMOUS_CODING CG13012
2R	3680608	2R_3680608_SNP [dm3] 2R_7793103_SNP [dm6]	A	G	7.048e^-4	1	SYNONYMOUS_CODING Gapdh1 UPSTREAM mus205	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4026998	3L_4026998_SNP [dm3] 3L_4026998_SNP [dm6]	A	G	7.053e^-4	1	UPSTREAM CG11594 INTRON Gr64a
3L	4026999	3L_4026999_SNP [dm3] 3L_4026999_SNP [dm6]	G	T	7.053e^-4	1	UPSTREAM CG11594 INTRON Gr64a
2L	5478288	2L_5478288_SNP [dm3] 2L_5478288_SNP [dm6]	C	T	7.053e^-4	1	INTERGENIC

By genomic position
Variant impact
Gene name

Resp_Butanedion_30pc phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results