DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.940e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.006375
In_3R_Mo	0.049842

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	6.6726	0.0356
In_3R_Mo	6.3349	0.0421

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1785 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9146182	2R_9146182_SNP [dm3] 2R_13258677_SNP [dm6]	G	A	2.455e^-6	0.867	DOWNSTREAM CG10799 INTERGENIC
3R	26527712	3R_26527712_SNP [dm3] 3R_30701990_SNP [dm6]	G	T	2.727e^-6	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9146231	2R_9146231_SNP [dm3] 2R_13258726_SNP [dm6]	G	A	2.887e^-6	0.867	DOWNSTREAM CG10799 INTERGENIC
2R	9146238	2R_9146238_SNP [dm3] 2R_13258733_SNP [dm6]	A	G	2.887e^-6	0.867	DOWNSTREAM CG10799 INTERGENIC
X	21324090	X_21324090_SNP [dm3] X_21453063_SNP [dm6]	G	C	3.563e^-6	0.867	INTRON CG42343
2R	9048840	2R_9048840_SNP [dm3] 2R_13161335_SNP [dm6]	T	C	3.572e^-6	0.867	INTRON Nrk	TF binding site BDTNP1_TFBS_twi
3L	16735429	3L_16735429_SNP [dm3] 3L_16742329_SNP [dm6]	G	A	4.247e^-6	0.867	INTERGENIC
3L	6480167	3L_6480167_SNP [dm3] 3L_6487067_SNP [dm6]	C	T	4.312e^-6	0.867	SYNONYMOUS_CODING CG10147	TF binding site BDTNP1_TFBS_twi
3R	5045687	3R_5045687_SNP [dm3] 3R_9219965_SNP [dm6]	A	T	5.233e^-6	0.867	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	18446458	3L_18446458_SNP [dm3] 3L_18453358_SNP [dm6]	C	G	5.424e^-6	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9048826	2R_9048826_SNP [dm3] 2R_13161321_SNP [dm6]	A	C	5.759e^-6	0.867	INTRON Nrk	TF binding site BDTNP1_TFBS_twi
3R	26527703	3R_26527703_SNP [dm3] 3R_30701981_SNP [dm6]	T	A	5.774e^-6	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9048897	2R_9048897_SNP [dm3] 2R_13161392_SNP [dm6]	T	G	6.122e^-6	0.867	NON_SYNONYMOUS_CODING Nrk	TF binding site BDTNP1_TFBS_twi
3R	26895815	3R_26895815_SNP [dm3] 3R_31070093_SNP [dm6]	G	T	6.506e^-6	0.867	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2L	9822575	2L_9822575_SNP [dm3] 2L_9822575_SNP [dm6]	T	G	7.612e^-6	0.946	INTRON nAChRalpha6
3R	10264754	3R_10264754_SNP [dm3] 3R_14439032_SNP [dm6]	G	A	8.192e^-6	0.955	INTRON cv-c
X	15860115	X_15860115_SNP [dm3] X_15966082_SNP [dm6]	A	T	9.541e^-6	0.971	UPSTREAM mir-927 INTRON mmd
2R	9151999	2R_9151999_SNP [dm3] 2R_13264494_SNP [dm6]	A	G	9.752e^-6	0.971	SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3L	5873664	3L_5873664_SNP [dm3] 3L_5880564_SNP [dm6]	A	T	1.232e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8274164	X_8274164_SNP [dm3] X_8380131_SNP [dm6]	A	G	1.238e^-5	0.971	INTERGENIC
X	749623	X_749623_SNP [dm3] X_855590_SNP [dm6]	A	G	1.241e^-5	0.971	INTRON CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19413335	2L_19413335_SNP [dm3] 2L_19413335_SNP [dm6]	A	T	1.269e^-5	0.971	INTRON Pax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5857291	3L_5857291_SNP [dm3] 3L_5864191_SNP [dm6]	C	T	1.314e^-5	0.971	INTERGENIC
2R	8613586	2R_8613586_SNP [dm3] 2R_12726081_SNP [dm6]	G	A	1.339e^-5	0.971	INTRON CG42663
3R	26527620	3R_26527620_DEL [dm3] 3R_30701898_DEL [dm6]	CG	C	1.340e^-5	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9892328	2R_9892328_SNP [dm3] 2R_14004823_SNP [dm6]	T	G	1.391e^-5	0.971	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3794426	2L_3794426_SNP [dm3] 2L_3794426_SNP [dm6]	T	C	1.429e^-5	0.971	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15594610	3L_15594610_SNP [dm3] 3L_15601510_SNP [dm6]	C	T	1.699e^-5	0.971	INTRON RhoGAP71E	TF binding site mE1_TFBS_chinmo
3R	7321521	3R_7321521_SNP [dm3] 3R_11495799_SNP [dm6]	C	T	1.762e^-5	0.971	INTERGENIC
2R	8613576	2R_8613576_SNP [dm3] 2R_12726071_SNP [dm6]	C	T	1.772e^-5	0.971	INTRON CG42663
2L	2177108	2L_2177108_SNP [dm3] 2L_2177108_SNP [dm6]	A	T	1.948e^-5	0.971	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	14221635	X_14221635_SNP [dm3] X_14327602_SNP [dm6]	C	T	1.957e^-5	0.971	INTRON dpr8
3R	13530932	3R_13530932_SNP [dm3] 3R_17705210_SNP [dm6]	C	A	1.989e^-5	0.971	INTRON osa
3R	26895754	3R_26895754_SNP [dm3] 3R_31070032_SNP [dm6]	A	C	2.022e^-5	0.971	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3L	13528516	3L_13528516_SNP [dm3] 3L_13535416_SNP [dm6]	A	G	2.023e^-5	0.971	UTR_3_PRIME bru-3 DOWNSTREAM bru-3	TF binding site mE1_TFBS_kn
2R	9146272	2R_9146272_SNP [dm3] 2R_13258767_SNP [dm6]	T	A	2.134e^-5	0.971	DOWNSTREAM CG10799 INTERGENIC
2R	9146260	2R_9146260_SNP [dm3] 2R_13258755_SNP [dm6]	T	C	2.254e^-5	0.971	DOWNSTREAM CG10799 INTERGENIC
2R	9146173	2R_9146173_SNP [dm3] 2R_13258668_SNP [dm6]	C	G	2.326e^-5	0.971	DOWNSTREAM CG10799 INTERGENIC
3R	8141669	3R_8141669_SNP [dm3] 3R_12315947_SNP [dm6]	A	C	2.376e^-5	0.971	INTERGENIC
3L	19769316	3L_19769316_SNP [dm3] 3L_19776216_SNP [dm6]	G	A	2.566e^-5	0.971	INTRON CG42637 & 1 other
2R	9754197	2R_9754197_SNP [dm3] 2R_13866692_SNP [dm6]	T	C	2.635e^-5	0.971	INTRON shot
2R	6888738	2R_6888738_SNP [dm3] 2R_11001233_SNP [dm6]	A	G	2.760e^-5	0.971	INTRON luna
3L	9361423	3L_9361423_SNP [dm3] 3L_9368323_SNP [dm6]	A	G	2.935e^-5	0.971	INTRON CG4452	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1979606	2L_1979606_SNP [dm3] 2L_1979606_SNP [dm6]	A	C	2.983e^-5	0.971	INTRON CG15356	TF binding site mE1_TFBS_HSA
3L	13229180	3L_13229180_SNP [dm3] 3L_13236080_SNP [dm6]	A	G	3.014e^-5	0.971	INTRON caps
3L	5873662	3L_5873662_SNP [dm3] 3L_5880562_SNP [dm6]	A	G	3.259e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13024874	3L_13024874_SNP [dm3] 3L_13031774_SNP [dm6]	A	T	3.274e^-5	0.971	DOWNSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6607449	3L_6607449_SNP [dm3] 3L_6614349_SNP [dm6]	T	C	3.287e^-5	0.971	INTRON CG8398
3R	27513292	3R_27513292_SNP [dm3] 3R_31687570_SNP [dm6]	C	T	3.406e^-5	0.971	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11443576	2R_11443576_SNP [dm3] 2R_15556071_SNP [dm6]	T	G	3.431e^-5	0.971	UPSTREAM CG12963 INTRON CG12963
2R	10841794	2R_10841794_SNP [dm3] 2R_14954289_SNP [dm6]	G	A	3.506e^-5	0.971	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5899172	3L_5899172_SNP [dm3] 3L_5906072_SNP [dm6]	G	A	3.519e^-5	0.971	SYNONYMOUS_CODING CG10486
3R	10229978	3R_10229978_SNP [dm3] 3R_14404256_SNP [dm6]	G	A	3.532e^-5	0.971	INTRON cv-c
3L	16661482	3L_16661482_SNP [dm3] 3L_16668382_SNP [dm6]	T	A	3.613e^-5	0.971	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16735436	3L_16735436_SNP [dm3] 3L_16742336_SNP [dm6]	C	T	3.626e^-5	0.971	INTERGENIC
3R	23300059	3R_23300059_SNP [dm3] 3R_27474337_SNP [dm6]	T	A	3.640e^-5	0.971	INTERGENIC
2L	8348181	2L_8348181_SNP [dm3] 2L_8348181_SNP [dm6]	C	T	3.729e^-5	0.971	INTRON CG7778
3R	25357177	3R_25357177_DEL [dm3] 3R_29531455_DEL [dm6]	ACAACAA	A	3.832e^-5	0.971	INTERGENIC	TF binding site mE1_TFBS_sens
3R	8513395	3R_8513395_SNP [dm3] 3R_12687673_SNP [dm6]	T	C	3.846e^-5	0.971	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3173257	2L_3173257_SNP [dm3] 2L_3173257_SNP [dm6]	C	T	3.995e^-5	0.971	UTR_3_PRIME CG31698 UPSTREAM CR44003 & 2 others DOWNSTREAM CG31698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17436207	2R_17436207_SNP [dm3] 2R_21548702_SNP [dm6]	T	C	4.053e^-5	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
X	13931521	X_13931521_SNP [dm3] X_14037488_SNP [dm6]	A	G	4.105e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5976368	3L_5976368_SNP [dm3] 3L_5983268_SNP [dm6]	G	T	4.143e^-5	0.971	DOWNSTREAM CR45439 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	10547476	2R_10547476_DEL [dm3] 2R_14659971_DEL [dm6]	CAGACACCC	C	4.145e^-5	0.971	INTERGENIC
3L	2060412	3L_2060412_SNP [dm3] 3L_2060412_SNP [dm6]	C	T	4.196e^-5	0.971	NON_SYNONYMOUS_CODING sls INTRON sls
3R	19465242	3R_19465242_SNP [dm3] 3R_23639520_SNP [dm6]	G	A	4.222e^-5	0.971	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4208879	X_4208879_SNP [dm3] X_4314846_SNP [dm6]	A	C	4.290e^-5	0.971	UTR_3_PRIME mei-9 UPSTREAM CR44957
3L	10842341	3L_10842341_SNP [dm3] 3L_10849241_SNP [dm6]	T	C	4.308e^-5	0.971	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	20232542	3R_20232542_SNP [dm3] 3R_24406820_SNP [dm6]	C	T	4.320e^-5	0.971	INTRON nAChRalpha1
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	4.404e^-5	0.971	INTERGENIC
3R	27515687	3R_27515687_SNP [dm3] 3R_31689965_SNP [dm6]	G	C	4.462e^-5	0.971	UPSTREAM CR45565 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17320976	2R_17320976_SNP [dm3] 2R_21433471_SNP [dm6]	G	C	4.509e^-5	0.971	INTRON Sdc
2L	5377325	2L_5377325_SNP [dm3] 2L_5377325_SNP [dm6]	A	G	4.560e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9775485	2R_9775485_SNP [dm3] 2R_13887980_SNP [dm6]	G	A	4.564e^-5	0.971	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26896083	3R_26896083_SNP [dm3] 3R_31070361_SNP [dm6]	C	G	4.618e^-5	0.971	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2R	19991068	2R_19991068_SNP [dm3] 2R_24103545_SNP [dm6]	A	G	4.669e^-5	0.971	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14938555	3L_14938555_SNP [dm3] 3L_14945455_SNP [dm6]	G	T	4.687e^-5	0.971	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5857216	3L_5857216_INS [dm3] 3L_5864116_INS [dm6]	G	GG	4.717e^-5	0.971	INTERGENIC
2L	13621081	2L_13621081_SNP [dm3] 2L_13621081_SNP [dm6]	G	A	4.794e^-5	0.971	INTRON kuz
2R	3463587	2R_3463587_SNP [dm3] 2R_7576082_SNP [dm6]	C	T	4.826e^-5	0.971	SYNONYMOUS_CODING Vps13
3R	22683355	3R_22683355_SNP [dm3] 3R_26857633_SNP [dm6]	A	G	5.037e^-5	0.971	INTRON Lerp
X	7769889	X_7769889_SNP [dm3] X_7875856_SNP [dm6]	C	T	5.040e^-5	0.971	NON_SYNONYMOUS_CODING Ir7c
X	13155756	X_13155756_SNP [dm3] X_13261723_SNP [dm6]	T	C	5.051e^-5	0.971	DOWNSTREAM HDAC4 INTRON comt
3R	20500099	3R_20500099_SNP [dm3] 3R_24674377_SNP [dm6]	T	G	5.117e^-5	0.971	INTRON slo
3R	13679866	3R_13679866_SNP [dm3] 3R_17854144_SNP [dm6]	C	T	5.249e^-5	0.971	INTRON tinc	TF binding site mE1_TFBS_inv
2L	19516846	2L_19516846_SNP [dm3] 2L_19516846_SNP [dm6]	T	A	5.278e^-5	0.971	UTR_5_PRIME CG10186 UPSTREAM CG10186
3L	14424076	3L_14424076_SNP [dm3] 3L_14430976_SNP [dm6]	T	A	5.402e^-5	0.971	INTRON bbg
2R	19100744	2R_19100744_SNP [dm3] 2R_23213221_SNP [dm6]	T	C	5.747e^-5	0.971	INTERGENIC
2R	17519211	2R_17519211_SNP [dm3] 2R_21631706_SNP [dm6]	T	A	5.835e^-5	0.971	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	3814085	3L_3814085_SNP [dm3] 3L_3814085_SNP [dm6]	G	T	5.847e^-5	0.971	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
X	6491114	X_6491114_SNP [dm3] X_6597081_SNP [dm6]	G	T	5.867e^-5	0.971	UPSTREAM APC7 DOWNSTREAM Pat1 INTERGENIC
X	14221632	X_14221632_SNP [dm3] X_14327599_SNP [dm6]	A	T	5.888e^-5	0.971	INTRON dpr8
3L	19388797	3L_19388797_SNP [dm3] 3L_19395697_SNP [dm6]	A	G	5.895e^-5	0.971	INTRON CG32206
3R	26137458	3R_26137458_INS [dm3] 3R_30311736_INS [dm6]	T	TG	5.935e^-5	0.971	INTRON hdc
3R	10416177	3R_10416177_SNP [dm3] 3R_14590455_SNP [dm6]	A	C	6.015e^-5	0.971	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20565703	3R_20565703_SNP [dm3] 3R_24739981_SNP [dm6]	T	C	6.025e^-5	0.971	INTRON tok
3L	14432999	3L_14432999_SNP [dm3] 3L_14439899_SNP [dm6]	T	C	6.049e^-5	0.971	INTRON bbg
2R	9148445	2R_9148445_SNP [dm3] 2R_13260940_SNP [dm6]	C	T	6.114e^-5	0.971	INTRON CG42319
3R	26897488	3R_26897488_SNP [dm3] 3R_31071766_SNP [dm6]	T	C	6.143e^-5	0.971	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
X	754179	X_754179_SNP [dm3] X_860146_SNP [dm6]	T	C	6.261e^-5	0.971	INTRON CG43867
3L	16261249	3L_16261249_SNP [dm3] 3L_16268149_SNP [dm6]	A	T	6.292e^-5	0.971	UTR_5_PRIME CG4950
3L	12378509	3L_12378509_SNP [dm3] 3L_12385409_SNP [dm6]	A	T	6.326e^-5	0.971	INTRON Ncc69
X	19702239	X_19702239_INS [dm3] X_19808206_INS [dm6]	G	GAATCG	6.398e^-5	0.971	INTERGENIC
X	2873017	X_2873017_SNP [dm3] X_2978984_SNP [dm6]	T	C	6.415e^-5	0.971	INTRON kirre	regulatory region REDfly_CRMs
3R	26896519	3R_26896519_SNP [dm3] 3R_31070797_SNP [dm6]	C	T	6.429e^-5	0.971	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11632915	2R_11632915_SNP [dm3] 2R_15745410_SNP [dm6]	C	G	6.453e^-5	0.971	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27164192	3R_27164192_SNP [dm3] 3R_31338470_SNP [dm6]	A	G	6.593e^-5	0.971	INTRON CG34347
3L	8381942	3L_8381942_SNP [dm3] 3L_8388842_SNP [dm6]	T	G	6.620e^-5	0.971	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12109478	2R_12109478_SNP [dm3] 2R_16221973_SNP [dm6]	G	A	6.632e^-5	0.971	UPSTREAM mrj DOWNSTREAM CG7798 INTRON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14411491	3L_14411491_SNP [dm3] 3L_14418391_SNP [dm6]	C	T	6.661e^-5	0.971	INTRON bbg
X	8016416	X_8016416_SNP [dm3] X_8122383_SNP [dm6]	C	G	6.700e^-5	0.971	SYNONYMOUS_CODING cyr
X	7918946	X_7918946_SNP [dm3] X_8024913_SNP [dm6]	G	A	6.783e^-5	0.971	INTRON Tbh
3L	6013320	3L_6013320_SNP [dm3] 3L_6020220_SNP [dm6]	A	C	6.786e^-5	0.971	INTRON PVRAP
X	17150440	X_17150440_SNP [dm3] X_17256407_SNP [dm6]	G	C	6.798e^-5	0.971	INTRON f
2R	19100797	2R_19100797_SNP [dm3] 2R_23213274_SNP [dm6]	A	T	6.799e^-5	0.971	INTERGENIC
2L	4863493	2L_4863493_SNP [dm3] 2L_4863493_SNP [dm6]	A	T	6.830e^-5	0.971	INTRON pog
3L	21846149	3L_21846149_SNP [dm3] 3L_21853049_SNP [dm6]	G	A	6.846e^-5	0.971	INTRON mub
3R	5045414	3R_5045414_SNP [dm3] 3R_9219692_SNP [dm6]	G	T	6.850e^-5	0.971	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2L	6500218	2L_6500218_SNP [dm3] 2L_6500218_SNP [dm6]	C	A	6.854e^-5	0.971	INTRON CG31637
2R	9034430	2R_9034430_SNP [dm3] 2R_13146925_SNP [dm6]	G	A	6.900e^-5	0.971	SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1902174	2L_1902174_SNP [dm3] 2L_1902174_SNP [dm6]	T	C	6.957e^-5	0.971	INTRON CG7337
3L	3814115	3L_3814115_SNP [dm3] 3L_3814115_SNP [dm6]	T	C	6.968e^-5	0.971	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	3173258	2L_3173258_SNP [dm3] 2L_3173258_SNP [dm6]	G	C	7.029e^-5	0.971	UTR_3_PRIME CG31698 UPSTREAM CR44003 & 2 others DOWNSTREAM CG31698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12378441	X_12378441_INS [dm3] X_12484408_INS [dm6]	A	AA	7.049e^-5	0.971	INTERGENIC
2L	3172988	2L_3172988_SNP [dm3] 2L_3172988_SNP [dm6]	A	T	7.093e^-5	0.971	UPSTREAM CR44003 & 1 other DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9718344	3R_9718344_SNP [dm3] 3R_13892622_SNP [dm6]	A	T	7.103e^-5	0.971	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13621057	2L_13621057_INS [dm3] 2L_13621057_INS [dm6]	A	ACAAATATA	7.107e^-5	0.971	INTRON kuz
X	769848	X_769848_SNP [dm3] X_875815_SNP [dm6]	G	A	7.128e^-5	0.971	SYNONYMOUS_CODING CG11664 INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	8188128	2R_8188128_SNP [dm3] 2R_12300623_SNP [dm6]	G	T	7.137e^-5	0.971	UTR_3_PRIME CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11337640	3L_11337640_SNP [dm3] 3L_11344540_SNP [dm6]	C	T	7.206e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16018482	2R_16018482_SNP [dm3] 2R_20130977_SNP [dm6]	A	T	7.275e^-5	0.971	INTERGENIC
3R	27513291	3R_27513291_SNP [dm3] 3R_31687569_SNP [dm6]	C	T	7.278e^-5	0.971	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3173605	2L_3173605_SNP [dm3] 2L_3173605_SNP [dm6]	C	T	7.413e^-5	0.971	NON_SYNONYMOUS_CODING CG31698 UPSTREAM CR44003 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15772211	2R_15772211_SNP [dm3] 2R_19884706_SNP [dm6]	A	G	7.526e^-5	0.971	INTERGENIC
2L	13621086	2L_13621086_SNP [dm3] 2L_13621086_SNP [dm6]	G	T	7.544e^-5	0.971	INTRON kuz
2R	11840601	2R_11840601_DEL [dm3] 2R_15953096_DEL [dm6]	AGGTGGAGTCGGA...	A	7.707e^-5	0.971	CODON_DELETION Strn-Mlck UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11632917	2R_11632917_SNP [dm3] 2R_15745412_SNP [dm6]	A	C	7.726e^-5	0.971	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9655605	3L_9655605_SNP [dm3] 3L_9662505_SNP [dm6]	C	A	7.727e^-5	0.971	INTRON fry
2L	5378699	2L_5378699_SNP [dm3] 2L_5378699_SNP [dm6]	T	C	7.840e^-5	0.971	DOWNSTREAM CR42850 INTERGENIC
3R	8513394	3R_8513394_SNP [dm3] 3R_12687672_SNP [dm6]	T	C	8.149e^-5	0.971	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12308963	2R_12308963_SNP [dm3] 2R_16421458_SNP [dm6]	C	T	8.167e^-5	0.971	INTRON Sema-2b
2L	5377848	2L_5377848_SNP [dm3] 2L_5377848_SNP [dm6]	A	C	8.209e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6078055	3L_6078055_SNP [dm3] 3L_6084955_SNP [dm6]	G	A	8.266e^-5	0.971	INTRON CG13293
3L	5899676	3L_5899676_SNP [dm3] 3L_5906576_SNP [dm6]	G	A	8.296e^-5	0.971	UPSTREAM CG13288 INTRON CG10486	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15594614	3L_15594614_SNP [dm3] 3L_15601514_SNP [dm6]	A	C	8.339e^-5	0.971	INTRON RhoGAP71E	TF binding site mE1_TFBS_chinmo
2R	9754195	2R_9754195_SNP [dm3] 2R_13866690_SNP [dm6]	C	T	8.390e^-5	0.971	INTRON shot
3L	14938573	3L_14938573_SNP [dm3] 3L_14945473_SNP [dm6]	A	G	8.548e^-5	0.971	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3942265	3L_3942265_SNP [dm3] 3L_3942265_SNP [dm6]	C	A	8.563e^-5	0.971	NON_SYNONYMOUS_CODING CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916
3L	12378511	3L_12378511_SNP [dm3] 3L_12385411_SNP [dm6]	A	G	8.587e^-5	0.971	INTRON Ncc69
X	10459935	X_10459935_SNP [dm3] X_10565902_SNP [dm6]	C	A	8.631e^-5	0.971	UTR_3_PRIME CG15296 INTRON spri
2R	19990933	2R_19990933_SNP [dm3] 2R_24103410_SNP [dm6]	G	A	8.668e^-5	0.971	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA
2R	19100753	2R_19100753_SNP [dm3] 2R_23213230_SNP [dm6]	T	A	8.715e^-5	0.971	INTERGENIC
3L	9318816	3L_9318816_SNP [dm3] 3L_9325716_SNP [dm6]	T	A	8.772e^-5	0.971	INTERGENIC
2L	12156970	2L_12156970_SNP [dm3] 2L_12156970_SNP [dm6]	T	C	9.114e^-5	0.971	INTRON CG31760	transposable element FlyBase
3L	6114532	3L_6114532_SNP [dm3] 3L_6121432_SNP [dm6]	A	T	9.261e^-5	0.971	INTRON Ets65A
2R	9146360	2R_9146360_SNP [dm3] 2R_13258855_SNP [dm6]	A	T	9.293e^-5	0.971	DOWNSTREAM CG10799 INTERGENIC
3R	24805222	3R_24805222_INS [dm3] 3R_28979500_INS [dm6]	G	GAGCCAGG	9.358e^-5	0.971	INTERGENIC
3L	16672187	3L_16672187_SNP [dm3] 3L_16679087_SNP [dm6]	C	T	9.453e^-5	0.971	NON_SYNONYMOUS_CODING Lasp START_GAINED CG43954 UTR_5_PRIME CG43954 INTRON Lasp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18655009	2L_18655009_SNP [dm3] 2L_18655009_SNP [dm6]	C	A	9.501e^-5	0.971	INTRON MESR3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	16415271	3L_16415271_SNP [dm3] 3L_16422171_SNP [dm6]	G	T	9.577e^-5	0.971	NON_SYNONYMOUS_CODING CG33158 DOWNSTREAM dsx-c73A	TF binding site mE1_TFBS_cad
3L	8381932	3L_8381932_SNP [dm3] 3L_8388832_SNP [dm6]	T	G	9.767e^-5	0.971	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12410896	X_12410896_SNP [dm3] X_12516863_SNP [dm6]	A	G	9.774e^-5	0.971	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2L	9778421	2L_9778421_SNP [dm3] 2L_9778421_SNP [dm6]	A	T	9.806e^-5	0.971	INTERGENIC
2R	8171058	2R_8171058_SNP [dm3] 2R_12283553_SNP [dm6]	T	A	9.927e^-5	0.971	INTRON CG42700
X	13931516	X_13931516_SNP [dm3] X_14037483_SNP [dm6]	T	A	9.946e^-5	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4339649	3L_4339649_SNP [dm3] 3L_4339649_SNP [dm6]	G	A	9.967e^-5	0.971	INTRON Cip4
2L	6531579	2L_6531579_SNP [dm3] 2L_6531579_SNP [dm6]	C	A	1.009e^-4	0.971	INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11843944	2R_11843944_SNP [dm3] 2R_15956439_SNP [dm6]	G	A	1.018e^-4	0.971	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11970182	2R_11970182_SNP [dm3] 2R_16082677_SNP [dm6]	G	A	1.022e^-4	0.971	UTR_3_PRIME Dg
2R	8613615	2R_8613615_INS [dm3] 2R_12726110_INS [dm6]	C	ACA	1.036e^-4	0.971	INTRON CG42663
X	11731834	X_11731834_SNP [dm3] X_11837801_SNP [dm6]	T	G	1.038e^-4	0.971	SYNONYMOUS_CODING CG15741 DOWNSTREAM rudhira EXON CR43908
2L	18629499	2L_18629499_SNP [dm3] 2L_18629499_SNP [dm6]	G	A	1.063e^-4	0.971	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5594510	3L_5594510_SNP [dm3] 3L_5601410_SNP [dm6]	A	T	1.066e^-4	0.971	UTR_3_PRIME CG10590
3L	10570926	3L_10570926_SNP [dm3] 3L_10577826_SNP [dm6]	G	A	1.069e^-4	0.971	INTRON A2bp1
3L	6013302	3L_6013302_SNP [dm3] 3L_6020202_SNP [dm6]	G	T	1.080e^-4	0.971	INTRON PVRAP
2R	11970187	2R_11970187_SNP [dm3] 2R_16082682_SNP [dm6]	T	A	1.083e^-4	0.971	UTR_3_PRIME Dg
3L	6078046	3L_6078046_DEL [dm3] 3L_6084946_DEL [dm6]	CA	C	1.094e^-4	0.971	INTRON CG13293
3R	1690062	3R_1690062_SNP [dm3] 3R_5864340_SNP [dm6]	C	T	1.094e^-4	0.971	UTR_3_PRIME CG34113
X	11734104	X_11734104_SNP [dm3] X_11840071_SNP [dm6]	G	A	1.099e^-4	0.971	SYNONYMOUS_CODING Cyp28c1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17386870	2R_17386870_SNP [dm3] 2R_21499365_SNP [dm6]	C	T	1.103e^-4	0.971	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
3L	10477114	3L_10477114_SNP [dm3] 3L_10484014_SNP [dm6]	C	G	1.106e^-4	0.971	INTRON A2bp1
3R	20508837	3R_20508837_SNP [dm3] 3R_24683115_SNP [dm6]	A	C	1.124e^-4	0.971	INTRON slo
X	8016419	X_8016419_SNP [dm3] X_8122386_SNP [dm6]	C	T	1.124e^-4	0.971	SYNONYMOUS_CODING cyr
3R	8355839	3R_8355839_SNP [dm3] 3R_12530117_SNP [dm6]	C	T	1.127e^-4	0.971	INTRON Octbeta3R
2L	9349371	2L_9349371_SNP [dm3] 2L_9349371_SNP [dm6]	G	A	1.130e^-4	0.971	UPSTREAM CG43350 & 1 other INTERGENIC
3R	8513398	3R_8513398_SNP [dm3] 3R_12687676_SNP [dm6]	A	G	1.141e^-4	0.971	INTRON kar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5873225	3L_5873225_SNP [dm3] 3L_5880125_SNP [dm6]	A	C	1.142e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12109395	2R_12109395_SNP [dm3] 2R_16221890_SNP [dm6]	G	A	1.144e^-4	0.971	SPLICE_SITE_DONOR CR43898 UPSTREAM mrj DOWNSTREAM CG7798 INTRON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16912879	2L_16912879_SNP [dm3] 2L_16912879_SNP [dm6]	A	T	1.146e^-4	0.971	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
2R	9053275	2R_9053275_SNP [dm3] 2R_13165770_SNP [dm6]	C	T	1.147e^-4	0.971	INTRON GLaz
3L	6013299	3L_6013299_SNP [dm3] 3L_6020199_SNP [dm6]	A	G	1.148e^-4	0.971	INTRON PVRAP
3L	5918461	3L_5918461_SNP [dm3] 3L_5925361_SNP [dm6]	C	A	1.156e^-4	0.971	INTRON Vap-33B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5876250	3L_5876250_SNP [dm3] 3L_5883150_SNP [dm6]	C	G	1.162e^-4	0.971	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14967476	2R_14967476_SNP [dm3] 2R_19079971_SNP [dm6]	C	T	1.170e^-4	0.971	INTRON 5-HT1A
2R	9160975	2R_9160975_SNP [dm3] 2R_13273470_SNP [dm6]	C	T	1.173e^-4	0.971	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3R	27181838	3R_27181838_SNP [dm3] 3R_31356116_SNP [dm6]	A	G	1.174e^-4	0.971	INTRON CG34347
2L	12185681	2L_12185681_SNP [dm3] 2L_12185681_SNP [dm6]	T	A	1.174e^-4	0.971	INTRON aret	TF binding site BDTNP1_TFBS_dl
2R	7829730	2R_7829730_SNP [dm3] 2R_11942225_SNP [dm6]	C	T	1.177e^-4	0.971	INTRON CG13188
2L	5486628	2L_5486628_SNP [dm3] 2L_5486628_SNP [dm6]	G	A	1.182e^-4	0.971	UPSTREAM CR45287 INTERGENIC
3L	14085596	3L_14085596_SNP [dm3] 3L_14092496_SNP [dm6]	T	C	1.186e^-4	0.971	INTERGENIC
2L	12573808	2L_12573808_SNP [dm3] 2L_12573808_SNP [dm6]	A	G	1.192e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16599739	2L_16599739_SNP [dm3] 2L_16599739_SNP [dm6]	A	C	1.205e^-4	0.971	INTRON CG42389
3L	21846172	3L_21846172_INS [dm3] 3L_21853072_INS [dm6]	T	TT	1.218e^-4	0.971	INTRON mub
2R	12584720	2R_12584720_SNP [dm3] 2R_16697215_SNP [dm6]	A	T	1.219e^-4	0.971	INTRON CG30463
2R	3356194	2R_3356194_SNP [dm3] 2R_7468689_SNP [dm6]	C	A	1.224e^-4	0.971	INTRON Aldh-III
2R	19073484	2R_19073484_SNP [dm3] 2R_23185961_SNP [dm6]	A	G	1.233e^-4	0.971	DOWNSTREAM CG13539 INTRON CG34371
3L	16820708	3L_16820708_SNP [dm3] 3L_16827608_SNP [dm6]	G	A	1.239e^-4	0.971	INTRON CG13024
3L	9834580	3L_9834580_SNP [dm3] 3L_9841480_SNP [dm6]	T	G	1.242e^-4	0.971	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8635001	2L_8635001_SNP [dm3] 2L_8635001_SNP [dm6]	T	A	1.245e^-4	0.971	INTRON Sema-1a
X	751729	X_751729_SNP [dm3] X_857696_SNP [dm6]	C	G	1.255e^-4	0.971	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2L	3173477	2L_3173477_SNP [dm3] 2L_3173477_SNP [dm6]	C	T	1.259e^-4	0.971	UPSTREAM CR44003 & 2 others INTRON CG31698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8391559	3L_8391559_SNP [dm3] 3L_8398459_SNP [dm6]	A	T	1.260e^-4	0.971	INTRON CG7120
3R	7537361	3R_7537361_SNP [dm3] 3R_11711639_SNP [dm6]	G	A	1.261e^-4	0.971	UPSTREAM CG14720 INTERGENIC	TF binding site mE1_TFBS_cad
X	15311533	X_15311533_SNP [dm3] X_15417500_SNP [dm6]	C	T	1.269e^-4	0.971	INTRON Cngl
2R	9160922	2R_9160922_SNP [dm3] 2R_13273417_SNP [dm6]	A	G	1.271e^-4	0.971	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3L	2210173	3L_2210173_SNP [dm3] 3L_2210173_SNP [dm6]	T	G	1.277e^-4	0.971	DOWNSTREAM CG15878 INTERGENIC
2R	10523681	2R_10523681_SNP [dm3] 2R_14636176_SNP [dm6]	G	T	1.280e^-4	0.971	INTERGENIC
X	7922950	X_7922950_SNP [dm3] X_8028917_SNP [dm6]	C	G	1.284e^-4	0.971	INTERGENIC
3R	20433802	3R_20433802_SNP [dm3] 3R_24608080_SNP [dm6]	A	G	1.284e^-4	0.971	INTRON mld
X	19273642	X_19273642_SNP [dm3] X_19379609_SNP [dm6]	G	A	1.301e^-4	0.971	INTRON kek5
X	14221676	X_14221676_SNP [dm3] X_14327643_SNP [dm6]	G	T	1.311e^-4	0.971	INTRON dpr8
2R	15918810	2R_15918810_SNP [dm3] 2R_20031305_SNP [dm6]	C	T	1.311e^-4	0.971	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18903656	2R_18903656_SNP [dm3] 2R_23016133_SNP [dm6]	C	A	1.317e^-4	0.971	INTRON twi & 1 other
2L	14983796	2L_14983796_SNP [dm3] 2L_14983796_SNP [dm6]	C	T	1.325e^-4	0.971	INTRON mol
3R	10227723	3R_10227723_SNP [dm3] 3R_14402001_SNP [dm6]	C	G	1.343e^-4	0.971	INTRON cv-c
3R	12493043	3R_12493043_SNP [dm3] 3R_16667321_SNP [dm6]	T	A	1.348e^-4	0.971	INTRON Ubx	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2211041	3L_2211041_SNP [dm3] 3L_2211041_SNP [dm6]	G	A	1.356e^-4	0.971	UTR_3_PRIME CG15878
X	5321207	X_5321207_SNP [dm3] X_5427174_SNP [dm6]	T	C	1.365e^-4	0.971	UTR_3_PRIME CG4165 UPSTREAM CG16756 DOWNSTREAM CG4165
3L	3942087	3L_3942087_SNP [dm3] 3L_3942087_SNP [dm6]	T	A	1.367e^-4	0.971	UPSTREAM CG14982 DOWNSTREAM CR43916 INTRON CG10863
3R	7321486	3R_7321486_SNP [dm3] 3R_11495764_SNP [dm6]	G	C	1.377e^-4	0.971	INTERGENIC
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	1.389e^-4	0.971	INTRON acj6
X	4235455	X_4235455_SNP [dm3] X_4341422_SNP [dm6]	T	A	1.389e^-4	0.971	INTRON norpA
X	3446326	X_3446326_SNP [dm3] X_3552293_SNP [dm6]	T	G	1.391e^-4	0.971	INTRON CG32791
2L	603059	2L_603059_SNP [dm3] 2L_603059_SNP [dm6]	T	C	1.401e^-4	0.971	INTRON CG13689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	9775517	2R_9775517_SNP [dm3] 2R_13888012_SNP [dm6]	A	G	1.407e^-4	0.971	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3942267	3L_3942267_SNP [dm3] 3L_3942267_SNP [dm6]	A	G	1.413e^-4	0.971	SYNONYMOUS_CODING CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916
2R	19073479	2R_19073479_SNP [dm3] 2R_23185956_SNP [dm6]	T	C	1.431e^-4	0.971	DOWNSTREAM CG13539 INTRON CG34371
2R	20182692	2R_20182692_SNP [dm3] 2R_24295169_SNP [dm6]	A	G	1.444e^-4	0.971	UPSTREAM CG3394 DOWNSTREAM mir-4985 INTRON CG3394	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9146157	2R_9146157_SNP [dm3] 2R_13258652_SNP [dm6]	G	T	1.462e^-4	0.971	DOWNSTREAM CG10799 INTERGENIC
2L	19136653	2L_19136653_SNP [dm3] 2L_19136653_SNP [dm6]	G	A	1.463e^-4	0.971	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3942089	3L_3942089_SNP [dm3] 3L_3942089_SNP [dm6]	A	C	1.463e^-4	0.971	UPSTREAM CG14982 DOWNSTREAM CR43916 INTRON CG10863
3L	5873800	3L_5873800_SNP [dm3] 3L_5880700_SNP [dm6]	A	G	1.469e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	5347969	2R_5347969_SNP [dm3] 2R_9460464_SNP [dm6]	T	A	1.470e^-4	0.971	INTRON Camta
2L	13584742	2L_13584742_SNP [dm3] 2L_13584742_SNP [dm6]	A	G	1.481e^-4	0.971	INTRON kuz
X	14219989	X_14219989_DEL [dm3] X_14325956_DEL [dm6]	CAGCCATACAAC...	C	1.485e^-4	0.971	INTRON dpr8
2R	5347949	2R_5347949_SNP [dm3] 2R_9460444_SNP [dm6]	C	A	1.487e^-4	0.971	INTRON Camta
3L	18446551	3L_18446551_INS [dm3] 3L_18453451_INS [dm6]	T	TT	1.487e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20683008	X_20683008_INS [dm3] X_20811981_INS [dm6]	A	AATA	1.488e^-4	0.971	INTRON shakB
X	14221285	X_14221285_SNP [dm3] X_14327252_SNP [dm6]	C	A	1.489e^-4	0.971	INTRON dpr8	TF binding site mE1_TFBS_inv
2L	964527	2L_964527_SNP [dm3] 2L_964527_SNP [dm6]	C	T	1.496e^-4	0.971	INTERGENIC
3R	7104892	3R_7104892_SNP [dm3] 3R_11279170_SNP [dm6]	T	C	1.498e^-4	0.971	INTRON CR31386
2R	9146253	2R_9146253_SNP [dm3] 2R_13258748_SNP [dm6]	A	T	1.499e^-4	0.971	DOWNSTREAM CG10799 INTERGENIC
3R	13681354	3R_13681354_SNP [dm3] 3R_17855632_SNP [dm6]	A	C	1.508e^-4	0.971	INTRON tinc
3R	6822297	3R_6822297_SNP [dm3] 3R_10996575_SNP [dm6]	G	C	1.510e^-4	0.971	INTRON CG34114
X	6785830	X_6785830_SNP [dm3] X_6891797_SNP [dm6]	C	T	1.512e^-4	0.971	INTERGENIC
3L	7498074	3L_7498074_SNP [dm3] 3L_7504974_SNP [dm6]	T	A	1.535e^-4	0.971	DOWNSTREAM CG7548 INTERGENIC
2L	9653904	2L_9653904_SNP [dm3] 2L_9653904_SNP [dm6]	A	T	1.538e^-4	0.971	NON_SYNONYMOUS_CODING Apoltp
3L	9319367	3L_9319367_SNP [dm3] 3L_9326267_SNP [dm6]	T	A	1.541e^-4	0.971	INTERGENIC
3R	26102405	3R_26102405_SNP [dm3] 3R_30276683_SNP [dm6]	C	A	1.542e^-4	0.971	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9054876	2R_9054876_SNP [dm3] 2R_13167371_SNP [dm6]	T	C	1.549e^-4	0.971	INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	9054888	2R_9054888_SNP [dm3] 2R_13167383_SNP [dm6]	C	A	1.549e^-4	0.971	INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	16764224	2R_16764224_SNP [dm3] 2R_20876719_SNP [dm6]	G	A	1.555e^-4	0.971	INTRON Ipk1
3R	10809108	3R_10809108_SNP [dm3] 3R_14983386_SNP [dm6]	C	T	1.561e^-4	0.971	INTERGENIC
3L	6457280	3L_6457280_SNP [dm3] 3L_6464180_SNP [dm6]	C	T	1.564e^-4	0.971	INTRON CG42747
3R	10493961	3R_10493961_INS [dm3] 3R_14668239_INS [dm6]	T	TTTTT	1.565e^-4	0.971	UTR_3_PRIME Meltrin INTRON Meltrin	TF binding site mE1_TFBS_cad
3L	19882294	3L_19882294_SNP [dm3] 3L_19889194_SNP [dm6]	A	G	1.568e^-4	0.971	UTR_3_PRIME Su_Tpl_ UPSTREAM Mi-2 INTRON Mi-2
3L	11725208	3L_11725208_SNP [dm3] 3L_11732108_SNP [dm6]	A	G	1.572e^-4	0.971	UPSTREAM CG32087 DOWNSTREAM CG32088 INTERGENIC
3R	5026808	3R_5026808_SNP [dm3] 3R_9201086_SNP [dm6]	A	G	1.576e^-4	0.971	INTRON pum	TF binding site mE1_TFBS_inv
X	19676687	X_19676687_SNP [dm3] X_19782654_SNP [dm6]	A	T	1.577e^-4	0.971	UTR_5_PRIME vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	19991031	2R_19991031_SNP [dm3] 2R_24103508_SNP [dm6]	A	T	1.597e^-4	0.971	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8000992	3L_8000992_SNP [dm3] 3L_8007892_SNP [dm6]	G	T	1.599e^-4	0.971	INTRON nmo
2R	3648947	2R_3648947_SNP [dm3] 2R_7761442_SNP [dm6]	T	C	1.611e^-4	0.971	INTRON CG30497 & 1 other
X	14219572	X_14219572_SNP [dm3] X_14325539_SNP [dm6]	A	C	1.615e^-4	0.971	INTRON dpr8
3L	8391602	3L_8391602_SNP [dm3] 3L_8398502_SNP [dm6]	A	T	1.622e^-4	0.971	INTRON CG7120
2L	16519498	2L_16519498_SNP [dm3] 2L_16519498_SNP [dm6]	A	G	1.626e^-4	0.971	INTRON CG5953
3R	24380534	3R_24380534_SNP [dm3] 3R_28554812_SNP [dm6]	G	A	1.627e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9623347	2R_9623347_SNP [dm3] 2R_13735842_SNP [dm6]	A	C	1.629e^-4	0.971	INTRON fas
3L	7110674	3L_7110674_SNP [dm3] 3L_7117574_SNP [dm6]	C	G	1.634e^-4	0.971	INTRON form3
3R	16867182	3R_16867182_SNP [dm3] 3R_21041460_SNP [dm6]	G	C	1.642e^-4	0.971	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2R	9053916	2R_9053916_SNP [dm3] 2R_13166411_SNP [dm6]	G	A	1.647e^-4	0.971	INTRON GLaz
X	14219575	X_14219575_SNP [dm3] X_14325542_SNP [dm6]	A	G	1.656e^-4	0.971	INTRON dpr8
2R	12109388	2R_12109388_SNP [dm3] 2R_16221883_SNP [dm6]	G	T	1.657e^-4	0.971	UPSTREAM mrj DOWNSTREAM CG7798 EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3173601	2L_3173601_SNP [dm3] 2L_3173601_SNP [dm6]	T	C	1.659e^-4	0.971	SYNONYMOUS_CODING CG31698 UPSTREAM CR44003 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	7114803	3R_7114803_SNP [dm3] 3R_11289081_SNP [dm6]	T	C	1.667e^-4	0.971	INTRON CR31386
3L	6285831	3L_6285831_SNP [dm3] 3L_6292731_SNP [dm6]	T	C	1.669e^-4	0.971	INTERGENIC
2L	3172896	2L_3172896_SNP [dm3] 2L_3172896_SNP [dm6]	C	A	1.689e^-4	0.971	UPSTREAM CR44003 DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	24261666	3R_24261666_SNP [dm3] 3R_28435944_SNP [dm6]	A	T	1.693e^-4	0.971	INTRON beat-VI
2L	13584747	2L_13584747_SNP [dm3] 2L_13584747_SNP [dm6]	G	C	1.694e^-4	0.971	INTRON kuz
2R	19230755	2R_19230755_SNP [dm3] 2R_23343232_SNP [dm6]	G	C	1.696e^-4	0.971	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
3R	6818430	3R_6818430_SNP [dm3] 3R_10992708_SNP [dm6]	T	C	1.705e^-4	0.971	INTRON CG34114
X	4241753	X_4241753_SNP [dm3] X_4347720_SNP [dm6]	T	C	1.713e^-4	0.971	UPSTREAM norpA INTRON norpA
3L	14938526	3L_14938526_SNP [dm3] 3L_14945426_SNP [dm6]	C	T	1.721e^-4	0.971	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	20392421	2R_20392421_SNP [dm3] 2R_24504898_SNP [dm6]	G	A	1.729e^-4	0.971	INTERGENIC
2L	12157413	2L_12157413_SNP [dm3] 2L_12157413_SNP [dm6]	T	C	1.732e^-4	0.971	INTRON CG31760
3L	11377520	3L_11377520_SNP [dm3] 3L_11384420_SNP [dm6]	A	G	1.732e^-4	0.971	UPSTREAM CR42755 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3172873	2L_3172873_SNP [dm3] 2L_3172873_SNP [dm6]	C	A	1.733e^-4	0.971	UPSTREAM CR44003 DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	2405751	2R_2405751_INS [dm3] 2R_6518246_INS [dm6]	A	AGTA	1.747e^-4	0.971	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11853452	2R_11853452_SNP [dm3] 2R_15965947_SNP [dm6]	C	A	1.749e^-4	0.971	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17519398	2R_17519398_SNP [dm3] 2R_21631893_SNP [dm6]	T	C	1.750e^-4	0.971	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	15105260	2L_15105260_SNP [dm3] 2L_15105260_SNP [dm6]	A	T	1.752e^-4	0.971	INTERGENIC
2R	9623332	2R_9623332_SNP [dm3] 2R_13735827_SNP [dm6]	T	C	1.755e^-4	0.971	INTRON fas
2R	11850225	2R_11850225_SNP [dm3] 2R_15962720_SNP [dm6]	C	T	1.768e^-4	0.971	NON_SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3L	11725207	3L_11725207_SNP [dm3] 3L_11732107_SNP [dm6]	G	A	1.768e^-4	0.971	UPSTREAM CG32087 DOWNSTREAM CG32088 INTERGENIC
2L	15381018	2L_15381018_SNP [dm3] 2L_15381018_SNP [dm6]	C	G	1.779e^-4	0.971	INTERGENIC
2R	15320825	2R_15320825_SNP [dm3] 2R_19433320_SNP [dm6]	A	G	1.779e^-4	0.971	NON_SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18903359	2R_18903359_SNP [dm3] 2R_23015836_SNP [dm6]	C	T	1.795e^-4	0.971	INTRON twi & 1 other
2R	12187912	2R_12187912_SNP [dm3] 2R_16300407_SNP [dm6]	T	C	1.814e^-4	0.971	EXON CR45232
2L	3172831	2L_3172831_SNP [dm3] 2L_3172831_SNP [dm6]	G	A	1.819e^-4	0.971	UPSTREAM CR44003 DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	3733096	3L_3733096_SNP [dm3] 3L_3733096_SNP [dm6]	A	C	1.819e^-4	0.971	INTRON CG32264
2R	9754178	2R_9754178_SNP [dm3] 2R_13866673_SNP [dm6]	G	A	1.826e^-4	0.971	INTRON shot
3L	5966593	3L_5966593_SNP [dm3] 3L_5973493_SNP [dm6]	T	C	1.826e^-4	0.971	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	16648058	3L_16648058_SNP [dm3] 3L_16654958_SNP [dm6]	A	T	1.833e^-4	0.971	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	3173469	2L_3173469_SNP [dm3] 2L_3173469_SNP [dm6]	C	T	1.833e^-4	0.971	UPSTREAM CR44003 & 2 others INTRON CG31698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14938542	3L_14938542_SNP [dm3] 3L_14945442_SNP [dm6]	A	C	1.847e^-4	0.971	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8001001	3L_8001001_SNP [dm3] 3L_8007901_SNP [dm6]	A	T	1.855e^-4	0.971	INTRON nmo
2L	8696298	2L_8696298_SNP [dm3] 2L_8696298_SNP [dm6]	A	T	1.855e^-4	0.971	INTRON Hnf4	TF binding site mE1_TFBS_cnc
X	8075624	X_8075624_SNP [dm3] X_8181591_SNP [dm6]	T	A	1.856e^-4	0.971	INTRON sdt
2L	9079069	2L_9079069_SNP [dm3] 2L_9079069_SNP [dm6]	C	T	1.859e^-4	0.971	INTERGENIC
2L	3789015	2L_3789015_SNP [dm3] 2L_3789015_SNP [dm6]	A	C	1.863e^-4	0.971	UPSTREAM CG3921 INTRON CG3921	TF binding site mE1_TFBS_HSA
2R	18239057	2R_18239057_SNP [dm3] 2R_22351552_SNP [dm6]	G	A	1.866e^-4	0.971	INTRON Liprin-gamma
2R	18239062	2R_18239062_SNP [dm3] 2R_22351557_SNP [dm6]	C	T	1.866e^-4	0.971	INTRON Liprin-gamma
3L	14428836	3L_14428836_DEL [dm3] 3L_14435736_DEL [dm6]	TT	T	1.871e^-4	0.971	INTRON bbg
X	4256493	X_4256493_INS [dm3] X_4362460_INS [dm6]	A	AG	1.873e^-4	0.971	UTR_3_PRIME norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13681350	3R_13681350_SNP [dm3] 3R_17855628_SNP [dm6]	T	C	1.881e^-4	0.971	INTRON tinc
3L	3942346	3L_3942346_SNP [dm3] 3L_3942346_SNP [dm6]	G	T	1.887e^-4	0.971	UPSTREAM CG14982 INTRON CG10863
X	3753479	X_3753479_SNP [dm3] X_3859446_SNP [dm6]	G	A	1.887e^-4	0.971	EXON roX1
2L	13621051	2L_13621051_SNP [dm3] 2L_13621051_SNP [dm6]	A	G	1.893e^-4	0.971	INTRON kuz
2L	12185679	2L_12185679_SNP [dm3] 2L_12185679_SNP [dm6]	G	C	1.896e^-4	0.971	INTRON aret	TF binding site BDTNP1_TFBS_dl
2R	11845068	2R_11845068_SNP [dm3] 2R_15957563_SNP [dm6]	G	T	1.917e^-4	0.971	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	16932397	2R_16932397_SNP [dm3] 2R_21044892_SNP [dm6]	C	A	1.927e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19315298	3L_19315298_SNP [dm3] 3L_19322198_SNP [dm6]	C	A	1.936e^-4	0.971	INTRON pip
3R	22455155	3R_22455155_SNP [dm3] 3R_26629433_SNP [dm6]	C	T	1.944e^-4	0.971	UPSTREAM TwdlK & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12226285	3L_12226285_SNP [dm3] 3L_12233185_SNP [dm6]	A	C	1.950e^-4	0.971	INTRON app
3L	5864459	3L_5864459_SNP [dm3] 3L_5871359_SNP [dm6]	C	G	1.957e^-4	0.971	UPSTREAM CG5568 INTERGENIC
3L	15019675	3L_15019675_DEL [dm3] 3L_15026575_DEL [dm6]	CCCC	AT	1.969e^-4	0.971	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
3L	11352770	3L_11352770_SNP [dm3] 3L_11359670_SNP [dm6]	G	C	1.977e^-4	0.971	INTERGENIC
2L	11306049	2L_11306049_SNP [dm3] 2L_11306049_SNP [dm6]	T	C	1.982e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16735496	3L_16735496_SNP [dm3] 3L_16742396_SNP [dm6]	T	C	1.988e^-4	0.971	INTERGENIC
2R	6888076	2R_6888076_SNP [dm3] 2R_11000571_SNP [dm6]	C	T	1.992e^-4	0.971	INTRON luna
2R	12109390	2R_12109390_SNP [dm3] 2R_16221885_SNP [dm6]	C	T	2.000e^-4	0.971	UPSTREAM mrj DOWNSTREAM CG7798 EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3173248	2L_3173248_SNP [dm3] 2L_3173248_SNP [dm6]	C	T	2.004e^-4	0.971	UTR_3_PRIME CG31698 UPSTREAM CR44003 & 2 others DOWNSTREAM CG31698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10416158	3R_10416158_SNP [dm3] 3R_14590436_SNP [dm6]	T	G	2.008e^-4	0.971	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8822370	3L_8822370_SNP [dm3] 3L_8829270_SNP [dm6]	C	G	2.011e^-4	0.971	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	12773993	2R_12773993_SNP [dm3] 2R_16886488_SNP [dm6]	T	C	2.031e^-4	0.971	INTRON CG8910
2L	19644081	2L_19644081_SNP [dm3] 2L_19644081_SNP [dm6]	T	C	2.043e^-4	0.971	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27164214	3R_27164214_SNP [dm3] 3R_31338492_SNP [dm6]	C	A	2.055e^-4	0.971	INTRON CG34347
2R	15935052	2R_15935052_SNP [dm3] 2R_20047547_SNP [dm6]	T	C	2.057e^-4	0.971	INTERGENIC
3R	7740802	3R_7740802_SNP [dm3] 3R_11915080_SNP [dm6]	G	A	2.065e^-4	0.971	INTRON Cad87A
2R	17522512	2R_17522512_SNP [dm3] 2R_21635007_SNP [dm6]	C	A	2.067e^-4	0.971	UPSTREAM CR42547 DOWNSTREAM CG15674 INTRON CG10321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9147884	2R_9147884_SNP [dm3] 2R_13260379_SNP [dm6]	A	C	2.071e^-4	0.971	UTR_5_PRIME CG42319
3R	4260675	3R_4260675_SNP [dm3] 3R_8434953_SNP [dm6]	A	G	2.081e^-4	0.971	INTRON CG45263
2R	12584719	2R_12584719_SNP [dm3] 2R_16697214_SNP [dm6]	A	T	2.084e^-4	0.971	INTRON CG30463
X	22147626	X_22147626_SNP [dm3] X_22745790_SNP [dm6]	G	C	2.086e^-4	0.971	INTRON CR44997
2R	11443587	2R_11443587_SNP [dm3] 2R_15556082_SNP [dm6]	C	G	2.091e^-4	0.971	UPSTREAM CG12963 INTRON CG12963
3L	12022946	3L_12022946_SNP [dm3] 3L_12029846_SNP [dm6]	A	G	2.091e^-4	0.971	INTRON rols
3R	23300574	3R_23300574_SNP [dm3] 3R_27474852_SNP [dm6]	T	A	2.092e^-4	0.971	INTERGENIC
3L	8000993	3L_8000993_DEL [dm3] 3L_8007893_DEL [dm6]	GTTATCA	G	2.095e^-4	0.971	INTRON nmo
2L	10611078	2L_10611078_SNP [dm3] 2L_10611078_SNP [dm6]	G	A	2.103e^-4	0.971	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16038148	2R_16038148_SNP [dm3] 2R_20150643_SNP [dm6]	C	T	2.106e^-4	0.971	UPSTREAM CR45229 INTERGENIC
X	14430599	X_14430599_SNP [dm3] X_14536566_SNP [dm6]	T	G	2.119e^-4	0.971	INTERGENIC
2R	15006676	2R_15006676_SNP [dm3] 2R_19119171_SNP [dm6]	T	C	2.131e^-4	0.971	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2R	9900941	2R_9900941_SNP [dm3] 2R_14013436_SNP [dm6]	C	T	2.137e^-4	0.971	INTRON mam
2R	15359041	2R_15359041_SNP [dm3] 2R_19471536_SNP [dm6]	C	T	2.138e^-4	0.971	INTRON par-1
3L	4292827	3L_4292827_SNP [dm3] 3L_4292827_SNP [dm6]	G	T	2.139e^-4	0.971	UPSTREAM CG15012 INTRON CG1319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	8594853	2R_8594853_SNP [dm3] 2R_12707348_SNP [dm6]	T	C	2.172e^-4	0.971	INTRON CG42663
3L	13700064	3L_13700064_SNP [dm3] 3L_13706964_SNP [dm6]	A	T	2.184e^-4	0.971	INTRON bru-3
X	19273429	X_19273429_SNP [dm3] X_19379396_SNP [dm6]	G	T	2.186e^-4	0.971	INTRON kek5
X	14221538	X_14221538_SNP [dm3] X_14327505_SNP [dm6]	T	A	2.188e^-4	0.971	INTRON dpr8
3L	21050735	3L_21050735_DEL [dm3] 3L_21057635_DEL [dm6]	CCCTCC	C	2.195e^-4	0.971	INTRON siz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	15019682	3L_15019682_SNP [dm3] 3L_15026582_SNP [dm6]	G	A	2.196e^-4	0.971	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
3R	25082239	3R_25082239_SNP [dm3] 3R_29256517_SNP [dm6]	T	G	2.202e^-4	0.971	UTR_5_PRIME CG45544 UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19136682	2L_19136682_SNP [dm3] 2L_19136682_SNP [dm6]	A	C	2.206e^-4	0.971	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22536760	3R_22536760_SNP [dm3] 3R_26711038_SNP [dm6]	T	C	2.207e^-4	0.971	INTRON amon
2R	14881715	2R_14881715_SNP [dm3] 2R_18994210_SNP [dm6]	A	C	2.213e^-4	0.971	UPSTREAM snoRNA:abba-a INTRON tn
2L	2836445	2L_2836445_SNP [dm3] 2L_2836445_SNP [dm6]	C	A	2.216e^-4	0.971	INTRON CG3119
3L	14198637	3L_14198637_SNP [dm3] 3L_14205537_SNP [dm6]	C	T	2.218e^-4	0.971	UTR_5_PRIME nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24174341	3R_24174341_SNP [dm3] 3R_28348619_SNP [dm6]	C	T	2.223e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24830995	3R_24830995_SNP [dm3] 3R_29005273_SNP [dm6]	A	G	2.233e^-4	0.971	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8201297	2R_8201297_SNP [dm3] 2R_12313792_SNP [dm6]	C	T	2.237e^-4	0.971	UTR_3_PRIME CG30203 UPSTREAM CG30046
3L	17703278	3L_17703278_SNP [dm3] 3L_17710178_SNP [dm6]	G	C	2.242e^-4	0.971	INTRON Ccn
3L	19771438	3L_19771438_SNP [dm3] 3L_19778338_SNP [dm6]	T	C	2.258e^-4	0.971	INTRON CG42637 & 1 other
X	19273555	X_19273555_SNP [dm3] X_19379522_SNP [dm6]	G	A	2.260e^-4	0.971	INTRON kek5
2R	9044922	2R_9044922_SNP [dm3] 2R_13157417_SNP [dm6]	G	C	2.261e^-4	0.971	SYNONYMOUS_CODING TppII	TF binding site mE1_TFBS_sens
3L	10225450	3L_10225450_SNP [dm3] 3L_10232350_SNP [dm6]	C	G	2.263e^-4	0.971	INTERGENIC
2L	12988098	2L_12988098_SNP [dm3] 2L_12988098_SNP [dm6]	G	C	2.274e^-4	0.971	INTERGENIC
X	12836579	X_12836579_SNP [dm3] X_12942546_SNP [dm6]	A	C	2.280e^-4	0.971	UTR_5_PRIME fne
2R	12584713	2R_12584713_SNP [dm3] 2R_16697208_SNP [dm6]	G	A	2.282e^-4	0.971	INTRON CG30463
2R	9046785	2R_9046785_SNP [dm3] 2R_13159280_SNP [dm6]	G	C	2.285e^-4	0.971	UPSTREAM TppII & 1 other INTRON CG34439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2348648	2L_2348648_SNP [dm3] 2L_2348648_SNP [dm6]	A	T	2.286e^-4	0.971	INTRON CG9967 & 1 other
3L	9621365	3L_9621365_SNP [dm3] 3L_9628265_SNP [dm6]	A	T	2.293e^-4	0.971	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
2L	1902173	2L_1902173_SNP [dm3] 2L_1902173_SNP [dm6]	T	A	2.295e^-4	0.971	INTRON CG7337
X	21321849	X_21321849_SNP [dm3] X_21450822_SNP [dm6]	T	C	2.296e^-4	0.971	INTRON CG42343
3L	13942860	3L_13942860_SNP [dm3] 3L_13949760_SNP [dm6]	A	T	2.305e^-4	0.971	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	27165624	3R_27165624_SNP [dm3] 3R_31339902_SNP [dm6]	C	T	2.308e^-4	0.971	INTRON CG34347
3L	5858021	3L_5858021_SNP [dm3] 3L_5864921_SNP [dm6]	C	T	2.313e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14219568	X_14219568_SNP [dm3] X_14325535_SNP [dm6]	T	C	2.314e^-4	0.971	INTRON dpr8
X	14219571	X_14219571_SNP [dm3] X_14325538_SNP [dm6]	T	C	2.314e^-4	0.971	INTRON dpr8
3L	14435418	3L_14435418_DEL [dm3] 3L_14442318_DEL [dm6]	AA	A	2.321e^-4	0.971	INTRON bbg
3L	2875725	3L_2875725_SNP [dm3] 3L_2875725_SNP [dm6]	T	A	2.322e^-4	0.971	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10841770	2R_10841770_SNP [dm3] 2R_14954265_SNP [dm6]	C	T	2.325e^-4	0.971	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3173196	2L_3173196_SNP [dm3] 2L_3173196_SNP [dm6]	C	T	2.331e^-4	0.971	UPSTREAM CR44003 & 2 others DOWNSTREAM CG31698 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12947763	X_12947763_SNP [dm3] X_13053730_SNP [dm6]	T	C	2.337e^-4	0.971	SYNONYMOUS_CODING CG12715 UPSTREAM CR44840 INTRON rad
3R	22303204	3R_22303204_SNP [dm3] 3R_26477482_SNP [dm6]	C	T	2.337e^-4	0.971	SYNONYMOUS_CODING plum
3R	17797127	3R_17797127_SNP [dm3] 3R_21971405_SNP [dm6]	C	T	2.349e^-4	0.971	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_z mE1_TFBS_sbb mE1_TFBS_Trl
3L	14707185	3L_14707185_SNP [dm3] 3L_14714085_SNP [dm6]	C	G	2.353e^-4	0.971	INTRON ome
3L	5329792	3L_5329792_SNP [dm3] 3L_5336692_SNP [dm6]	G	A	2.353e^-4	0.971	INTERGENIC
2R	17522471	2R_17522471_SNP [dm3] 2R_21634966_SNP [dm6]	C	T	2.361e^-4	0.971	UTR_5_PRIME CG10321 UPSTREAM CR42547 DOWNSTREAM CG15674	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22683354	3R_22683354_SNP [dm3] 3R_26857632_SNP [dm6]	C	T	2.367e^-4	0.971	INTRON Lerp
3L	12860481	3L_12860481_SNP [dm3] 3L_12867381_SNP [dm6]	T	C	2.368e^-4	0.971	INTERGENIC
2R	14967470	2R_14967470_SNP [dm3] 2R_19079965_SNP [dm6]	G	T	2.376e^-4	0.971	INTRON 5-HT1A
2L	19819037	2L_19819037_DEL [dm3] 2L_19819037_DEL [dm6]	CG	C	2.382e^-4	0.971	INTRON sick
4	1097169	4_1097169_SNP [dm3] 4_1076543_SNP [dm6]	T	G	2.383e^-4	0.971	UTR_3_PRIME Rfabg DOWNSTREAM Rfabg & 1 other	transposable element FlyBase
2L	19129057	2L_19129057_SNP [dm3] 2L_19129057_SNP [dm6]	G	A	2.398e^-4	0.971	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3L	5857739	3L_5857739_SNP [dm3] 3L_5864639_SNP [dm6]	G	T	2.402e^-4	0.971	INTERGENIC
3R	27516711	3R_27516711_SNP [dm3] 3R_31690989_SNP [dm6]	T	C	2.407e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3173609	2L_3173609_SNP [dm3] 2L_3173609_SNP [dm6]	C	T	2.407e^-4	0.971	NON_SYNONYMOUS_CODING CG31698 UPSTREAM CR44003 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	16359522	X_16359522_SNP [dm3] X_16465489_SNP [dm6]	G	A	2.410e^-4	0.971	INTRON para
3L	8000990	3L_8000990_SNP [dm3] 3L_8007890_SNP [dm6]	C	T	2.411e^-4	0.971	INTRON nmo
3L	4667154	3L_4667154_SNP [dm3] 3L_4667154_SNP [dm6]	T	G	2.419e^-4	0.971	SYNONYMOUS_CODING CG32236 INTRON axo
2L	16011988	2L_16011988_SNP [dm3] 2L_16011988_SNP [dm6]	G	A	2.425e^-4	0.971	INTRON beat-Ic
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	2.427e^-4	0.971	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
X	754186	X_754186_SNP [dm3] X_860153_SNP [dm6]	G	A	2.427e^-4	0.971	INTRON CG43867
2L	13584731	2L_13584731_SNP [dm3] 2L_13584731_SNP [dm6]	G	A	2.430e^-4	0.971	INTRON kuz
4	1070858	4_1070858_SNP [dm3] 4_1050232_SNP [dm6]	G	T	2.436e^-4	0.971	INTRON CaMKII
3R	17016607	3R_17016607_SNP [dm3] 3R_21190885_SNP [dm6]	A	G	2.438e^-4	0.971	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12714386	2R_12714386_SNP [dm3] 2R_16826881_SNP [dm6]	C	G	2.444e^-4	0.971	UTR_5_PRIME CG34460 DOWNSTREAM CG34459
X	21323959	X_21323959_SNP [dm3] X_21452932_SNP [dm6]	A	G	2.451e^-4	0.971	INTRON CG42343
3L	20675072	3L_20675072_SNP [dm3] 3L_20681972_SNP [dm6]	C	T	2.458e^-4	0.971	INTERGENIC
3L	6114523	3L_6114523_DEL [dm3] 3L_6121423_DEL [dm6]	AA	T	2.461e^-4	0.971	INTRON Ets65A
3R	11206710	3R_11206710_SNP [dm3] 3R_15380988_SNP [dm6]	T	C	2.465e^-4	0.971	DOWNSTREAM h-cup INTRON Rbp
2R	16939318	2R_16939318_SNP [dm3] 2R_21051813_SNP [dm6]	G	A	2.468e^-4	0.971	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15499039	X_15499039_SNP [dm3] X_15605006_SNP [dm6]	T	A	2.470e^-4	0.971	UTR_3_PRIME sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	19488426	2L_19488426_SNP [dm3] 2L_19488426_SNP [dm6]	C	T	2.474e^-4	0.971	DOWNSTREAM CG10194 INTRON CG13083
3L	16674962	3L_16674962_DEL [dm3] 3L_16681862_DEL [dm6]	GGAATG	G	2.477e^-4	0.971	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
3L	3599267	3L_3599267_SNP [dm3] 3L_3599267_SNP [dm6]	G	A	2.479e^-4	0.971	INTRON Eip63E
2R	14881769	2R_14881769_SNP [dm3] 2R_18994264_SNP [dm6]	G	A	2.481e^-4	0.971	UPSTREAM snoRNA:abba-a INTRON tn
3L	2343982	3L_2343982_SNP [dm3] 3L_2343982_SNP [dm6]	G	A	2.482e^-4	0.971	SYNONYMOUS_CODING MsR1	TF binding site mE1_TFBS_chinmo
2L	11306032	2L_11306032_DEL [dm3] 2L_11306032_DEL [dm6]	ATGGGCCACAAGC...	A	2.486e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
X	9164422	X_9164422_SNP [dm3] X_9270389_SNP [dm6]	A	C	2.499e^-4	0.971	UPSTREAM CG17440 DOWNSTREAM Cfp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8196488	2R_8196488_SNP [dm3] 2R_12308983_SNP [dm6]	G	A	2.500e^-4	0.971	NON_SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo
4	1181361	4_1181361_SNP [dm3] 4_1160735_SNP [dm6]	G	T	2.502e^-4	0.971	INTRON CG32017 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med transposable element FlyBase
3L	14384437	3L_14384437_SNP [dm3] 3L_14391337_SNP [dm6]	T	C	2.504e^-4	0.971	INTERGENIC
2R	12276490	2R_12276490_SNP [dm3] 2R_16388985_SNP [dm6]	A	G	2.509e^-4	0.971	INTRON Sema-2b
3L	3903711	3L_3903711_SNP [dm3] 3L_3903711_SNP [dm6]	A	G	2.511e^-4	0.971	SYNONYMOUS_CODING Sc2 UPSTREAM Ubi-p63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2839219	2L_2839219_SNP [dm3] 2L_2839219_SNP [dm6]	C	A	2.513e^-4	0.971	SYNONYMOUS_CODING Cpr23B UPSTREAM CG2975 DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	771165	X_771165_SNP [dm3] X_877132_SNP [dm6]	C	T	2.527e^-4	0.971	DOWNSTREAM CG11664 INTRON CG43867
2R	11841125	2R_11841125_SNP [dm3] 2R_15953620_SNP [dm6]	G	A	2.533e^-4	0.971	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	2.535e^-4	0.971	INTERGENIC
X	5601398	X_5601398_SNP [dm3] X_5707365_SNP [dm6]	C	T	2.544e^-4	0.971	SPLICE_SITE_REGION CG4096 INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19329473	2L_19329473_SNP [dm3] 2L_19329473_SNP [dm6]	C	T	2.546e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	9449524	X_9449524_SNP [dm3] X_9555491_SNP [dm6]	T	C	2.565e^-4	0.971	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	12185378	2L_12185378_SNP [dm3] 2L_12185378_SNP [dm6]	A	C	2.566e^-4	0.971	INTRON aret
3L	19199740	3L_19199740_SNP [dm3] 3L_19206640_SNP [dm6]	C	T	2.570e^-4	0.971	INTRON fz2
X	5301031	X_5301031_SNP [dm3] X_5406998_SNP [dm6]	A	C	2.572e^-4	0.971	SYNONYMOUS_CODING NAAT1
2L	3172802	2L_3172802_SNP [dm3] 2L_3172802_SNP [dm6]	A	G	2.574e^-4	0.971	UPSTREAM CR44003 DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
4	1049303	4_1049303_SNP [dm3] 4_1028677_SNP [dm6]	G	A	2.581e^-4	0.971	UTR_3_PRIME CG11077 INTRON CR44031	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	15623674	3L_15623674_SNP [dm3] 3L_15630574_SNP [dm6]	G	C	2.581e^-4	0.971	INTRON comm3
2R	3687987	2R_3687987_SNP [dm3] 2R_7800482_SNP [dm6]	C	A	2.597e^-4	0.971	SYNONYMOUS_CODING mus205 DOWNSTREAM Nop17l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16288827	2R_16288827_SNP [dm3] 2R_20401322_SNP [dm6]	C	A	2.609e^-4	0.971	INTERGENIC
3L	2059162	3L_2059162_SNP [dm3] 3L_2059162_SNP [dm6]	C	G	2.639e^-4	0.971	NON_SYNONYMOUS_CODING sls INTRON sls
3L	16648606	3L_16648606_SNP [dm3] 3L_16655506_SNP [dm6]	T	C	2.642e^-4	0.971	INTRON Baldspot
2R	12030199	2R_12030199_SNP [dm3] 2R_16142694_SNP [dm6]	G	A	2.645e^-4	0.971	SYNONYMOUS_CODING CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8462030	2R_8462030_SNP [dm3] 2R_12574525_SNP [dm6]	A	G	2.648e^-4	0.971	NON_SYNONYMOUS_CODING ClC-b DOWNSTREAM Sin3A
3R	10264704	3R_10264704_SNP [dm3] 3R_14438982_SNP [dm6]	A	G	2.652e^-4	0.971	INTRON cv-c
3L	2049649	3L_2049649_SNP [dm3] 3L_2049649_SNP [dm6]	T	A	2.654e^-4	0.971	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3R	27513466	3R_27513466_SNP [dm3] 3R_31687744_SNP [dm6]	C	T	2.659e^-4	0.971	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9351369	3L_9351369_SNP [dm3] 3L_9358269_SNP [dm6]	C	T	2.662e^-4	0.971	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18094917	3R_18094917_SNP [dm3] 3R_22269195_SNP [dm6]	G	T	2.672e^-4	0.971	INTRON SKIP
3L	14938436	3L_14938436_SNP [dm3] 3L_14945336_SNP [dm6]	G	A	2.674e^-4	0.971	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22299373	3R_22299373_SNP [dm3] 3R_26473651_SNP [dm6]	T	C	2.681e^-4	0.971	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10459888	X_10459888_SNP [dm3] X_10565855_SNP [dm6]	A	T	2.684e^-4	0.971	UTR_3_PRIME CG15296 INTRON spri
3R	21690720	3R_21690720_SNP [dm3] 3R_25864998_SNP [dm6]	T	G	2.692e^-4	0.971	INTRON CG5890
2R	14191569	2R_14191569_INS [dm3] 2R_18304064_INS [dm6]	A	AA	2.698e^-4	0.971	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14881713	2R_14881713_SNP [dm3] 2R_18994208_SNP [dm6]	A	G	2.703e^-4	0.971	UPSTREAM snoRNA:abba-a INTRON tn
3L	5966628	3L_5966628_SNP [dm3] 3L_5973528_SNP [dm6]	T	C	2.710e^-4	0.971	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	14569106	2R_14569106_SNP [dm3] 2R_18681601_SNP [dm6]	G	A	2.714e^-4	0.971	NON_SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14792446	3L_14792446_SNP [dm3] 3L_14799346_SNP [dm6]	A	G	2.727e^-4	0.971	UTR_3_PRIME CG9425
2L	1630080	2L_1630080_SNP [dm3] 2L_1630080_SNP [dm6]	T	G	2.731e^-4	0.971	INTERGENIC
2L	1630814	2L_1630814_SNP [dm3] 2L_1630814_SNP [dm6]	C	G	2.731e^-4	0.971	INTERGENIC
2L	1631074	2L_1631074_SNP [dm3] 2L_1631074_SNP [dm6]	T	C	2.731e^-4	0.971	INTERGENIC
3L	4339623	3L_4339623_SNP [dm3] 3L_4339623_SNP [dm6]	T	C	2.736e^-4	0.971	INTRON Cip4
3L	9838872	3L_9838872_SNP [dm3] 3L_9845772_SNP [dm6]	C	T	2.742e^-4	0.971	INTRON RasGAP1
3R	26550034	3R_26550034_SNP [dm3] 3R_30724312_SNP [dm6]	C	A	2.752e^-4	0.971	INTERGENIC
3L	5864966	3L_5864966_SNP [dm3] 3L_5871866_SNP [dm6]	G	T	2.754e^-4	0.971	NON_SYNONYMOUS_CODING CG5568
3R	10412681	3R_10412681_SNP [dm3] 3R_14586959_SNP [dm6]	A	G	2.761e^-4	0.971	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18048319	2R_18048319_SNP [dm3] 2R_22160814_SNP [dm6]	A	T	2.772e^-4	0.971	INTRON a
2L	14716613	2L_14716613_SNP [dm3] 2L_14716613_SNP [dm6]	C	T	2.784e^-4	0.971	INTERGENIC
X	5601395	X_5601395_SNP [dm3] X_5707362_SNP [dm6]	C	T	2.785e^-4	0.971	INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17000500	2R_17000500_SNP [dm3] 2R_21112995_SNP [dm6]	C	A	2.791e^-4	0.971	INTRON ktub
2L	5660648	2L_5660648_SNP [dm3] 2L_5660648_SNP [dm6]	A	G	2.791e^-4	0.971	INTERGENIC
2R	16932396	2R_16932396_SNP [dm3] 2R_21044891_SNP [dm6]	G	C	2.797e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7831512	2R_7831512_SNP [dm3] 2R_11944007_SNP [dm6]	G	T	2.805e^-4	0.971	INTRON CG13188
X	8016347	X_8016347_SNP [dm3] X_8122314_SNP [dm6]	T	C	2.809e^-4	0.971	INTRON cyr
2R	9034475	2R_9034475_SNP [dm3] 2R_13146970_SNP [dm6]	T	G	2.810e^-4	0.971	SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3173460	2L_3173460_SNP [dm3] 2L_3173460_SNP [dm6]	A	C	2.816e^-4	0.971	UPSTREAM CR44003 & 2 others INTRON CG31698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16654225	2R_16654225_SNP [dm3] 2R_20766720_SNP [dm6]	G	A	2.825e^-4	0.971	EXON CR44665
2R	19109550	2R_19109550_SNP [dm3] 2R_23222027_SNP [dm6]	C	T	2.837e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9427973	2L_9427973_SNP [dm3] 2L_9427973_SNP [dm6]	A	G	2.848e^-4	0.971	UTR_5_PRIME CG42847 DOWNSTREAM FucTB & 1 other
2L	603050	2L_603050_SNP [dm3] 2L_603050_SNP [dm6]	A	C	2.850e^-4	0.971	INTRON CG13689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
4	1012960	4_1012960_SNP [dm3] 4_992334_SNP [dm6]	A	T	2.851e^-4	0.971	INTRON toy
2L	6501304	2L_6501304_SNP [dm3] 2L_6501304_SNP [dm6]	C	A	2.853e^-4	0.971	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9623317	2R_9623317_SNP [dm3] 2R_13735812_SNP [dm6]	T	C	2.855e^-4	0.971	INTRON fas
2R	17438052	2R_17438052_SNP [dm3] 2R_21550547_SNP [dm6]	T	C	2.856e^-4	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9691297	2R_9691297_SNP [dm3] 2R_13803792_SNP [dm6]	C	G	2.858e^-4	0.971	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
3R	27164093	3R_27164093_SNP [dm3] 3R_31338371_SNP [dm6]	G	A	2.859e^-4	0.971	INTRON CG34347
2R	11845066	2R_11845066_SNP [dm3] 2R_15957561_SNP [dm6]	C	A	2.867e^-4	0.971	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
X	755118	X_755118_SNP [dm3] X_861085_SNP [dm6]	A	T	2.880e^-4	0.971	INTRON CG43867
X	17102843	X_17102843_SNP [dm3] X_17208810_SNP [dm6]	T	C	2.884e^-4	0.971	NON_SYNONYMOUS_CODING CG32563 DOWNSTREAM CG32564 & 1 other
3R	21725739	3R_21725739_DEL [dm3] 3R_25900017_DEL [dm6]	TT	T	2.887e^-4	0.971	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
2R	13463998	2R_13463998_SNP [dm3] 2R_17576493_SNP [dm6]	T	A	2.894e^-4	0.971	SYNONYMOUS_CODING Dcr-2	TF binding site mE1_TFBS_sens
2R	16730806	2R_16730806_SNP [dm3] 2R_20843301_SNP [dm6]	G	T	2.899e^-4	0.971	INTERGENIC
2L	18649136	2L_18649136_SNP [dm3] 2L_18649136_SNP [dm6]	T	C	2.902e^-4	0.971	INTRON MESR3
3R	13465105	3R_13465105_INS [dm3] 3R_17639383_INS [dm6]	C	CC	2.903e^-4	0.971	INTRON CG43175 EXON CR45222
3R	8067244	3R_8067244_SNP [dm3] 3R_12241522_SNP [dm6]	C	T	2.904e^-4	0.971	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_inv
2L	5644012	2L_5644012_SNP [dm3] 2L_5644012_SNP [dm6]	C	T	2.905e^-4	0.971	INTRON CG31646
X	5739244	X_5739244_SNP [dm3] X_5845211_SNP [dm6]	T	G	2.930e^-4	0.971	UPSTREAM CG12729 INTERGENIC
3L	7698947	3L_7698947_SNP [dm3] 3L_7705847_SNP [dm6]	C	T	2.933e^-4	0.971	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	7542908	3L_7542908_SNP [dm3] 3L_7549808_SNP [dm6]	T	G	2.937e^-4	0.971	INTERGENIC
3L	14526147	3L_14526147_SNP [dm3] 3L_14533047_SNP [dm6]	G	A	2.948e^-4	0.971	INTRON bbg
3R	14691342	3R_14691342_SNP [dm3] 3R_18865620_SNP [dm6]	C	T	2.959e^-4	0.971	INTERGENIC
3L	3111615	3L_3111615_SNP [dm3] 3L_3111615_SNP [dm6]	T	G	2.971e^-4	0.971	UPSTREAM CG45066 INTRON CG45067
2L	4024920	2L_4024920_SNP [dm3] 2L_4024920_SNP [dm6]	T	A	2.977e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19912535	2L_19912535_SNP [dm3] 2L_19912535_SNP [dm6]	A	G	2.985e^-4	0.971	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2R	11848768	2R_11848768_SNP [dm3] 2R_15961263_SNP [dm6]	G	A	2.985e^-4	0.971	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19693768	3L_19693768_SNP [dm3] 3L_19700668_SNP [dm6]	A	G	2.986e^-4	0.971	DOWNSTREAM serp INTERGENIC
X	754766	X_754766_SNP [dm3] X_860733_SNP [dm6]	T	A	2.990e^-4	0.971	INTRON CG43867
X	7921568	X_7921568_SNP [dm3] X_8027535_SNP [dm6]	G	A	2.998e^-4	0.971	DOWNSTREAM Tbh INTERGENIC
X	758470	X_758470_SNP [dm3] X_864437_SNP [dm6]	C	G	3.003e^-4	0.971	INTRON CG43867
3R	14510312	3R_14510312_SNP [dm3] 3R_18684590_SNP [dm6]	A	T	3.030e^-4	0.971	SYNONYMOUS_CODING CG7708
3L	1615447	3L_1615447_SNP [dm3] 3L_1615447_SNP [dm6]	T	C	3.031e^-4	0.971	SYNONYMOUS_CODING CG12105 UPSTREAM CG12105 INTRON CG33791 & 1 other
3L	6607056	3L_6607056_SNP [dm3] 3L_6613956_SNP [dm6]	T	C	3.035e^-4	0.971	INTRON CG8398
X	753615	X_753615_SNP [dm3] X_859582_SNP [dm6]	G	C	3.047e^-4	0.971	INTRON CG43867
3L	6484398	3L_6484398_SNP [dm3] 3L_6491298_SNP [dm6]	A	C	3.048e^-4	0.971	UTR_3_PRIME CG10144 DOWNSTREAM CG8270
3L	8894005	3L_8894005_SNP [dm3] 3L_8900905_SNP [dm6]	T	A	3.049e^-4	0.971	INTRON TrpA1
2L	19118833	2L_19118833_SNP [dm3] 2L_19118833_SNP [dm6]	T	C	3.056e^-4	0.971	INTRON Ddc	regulatory region REDfly_CRMs
X	3517666	X_3517666_SNP [dm3] X_3623633_SNP [dm6]	G	A	3.061e^-4	0.971	INTRON AstA-R1
3L	9351386	3L_9351386_SNP [dm3] 3L_9358286_SNP [dm6]	A	G	3.062e^-4	0.971	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	750624	X_750624_SNP [dm3] X_856591_SNP [dm6]	G	A	3.066e^-4	0.971	INTRON CG43867	TF binding site mE1_TFBS_chinmo
X	8075644	X_8075644_SNP [dm3] X_8181611_SNP [dm6]	G	A	3.072e^-4	0.971	INTRON sdt
2R	17683830	2R_17683830_SNP [dm3] 2R_21796325_SNP [dm6]	T	C	3.076e^-4	0.971	UPSTREAM CG34204 INTERGENIC
X	15311523	X_15311523_SNP [dm3] X_15417490_SNP [dm6]	A	G	3.077e^-4	0.971	INTRON Cngl
3R	14974843	3R_14974843_SNP [dm3] 3R_19149121_SNP [dm6]	A	T	3.087e^-4	0.971	NON_SYNONYMOUS_CODING CG5835 UPSTREAM CR44107	TF binding site mE1_TFBS_chinmo
3R	8003697	3R_8003697_SNP [dm3] 3R_12177975_SNP [dm6]	T	C	3.091e^-4	0.971	INTERGENIC
X	21902372	X_21902372_SNP [dm3] X_22500536_SNP [dm6]	C	A	3.096e^-4	0.971	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19100686	2R_19100686_SNP [dm3] 2R_23213163_SNP [dm6]	G	A	3.098e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13025527	3L_13025527_SNP [dm3] 3L_13032427_SNP [dm6]	G	C	3.101e^-4	0.971	INTRON CG17672 EXON CR45157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	774222	X_774222_DEL [dm3] X_880189_DEL [dm6]	GCAG	G	3.104e^-4	0.971	INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8381953	3L_8381953_SNP [dm3] 3L_8388853_SNP [dm6]	A	G	3.116e^-4	0.971	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19332458	2L_19332458_SNP [dm3] 2L_19332458_SNP [dm6]	T	G	3.137e^-4	0.971	INTERGENIC
2R	9623342	2R_9623342_SNP [dm3] 2R_13735837_SNP [dm6]	A	T	3.151e^-4	0.971	INTRON fas
2R	14881664	2R_14881664_SNP [dm3] 2R_18994159_SNP [dm6]	C	G	3.155e^-4	0.971	UPSTREAM snoRNA:abba-a INTRON tn
2R	12927808	2R_12927808_SNP [dm3] 2R_17040303_SNP [dm6]	C	A	3.158e^-4	0.971	INTRON RhoGEF2 EXON CR45145
2L	3947547	2L_3947547_DEL [dm3] 2L_3947547_DEL [dm6]	TCATTCAT	T	3.159e^-4	0.971	INTRON fred
2R	16612806	2R_16612806_SNP [dm3] 2R_20725301_SNP [dm6]	C	G	3.160e^-4	0.971	INTRON dpr
2L	19136820	2L_19136820_SNP [dm3] 2L_19136820_SNP [dm6]	A	T	3.160e^-4	0.971	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5062860	3R_5062860_DEL [dm3] 3R_9237138_DEL [dm6]	AGA	A	3.160e^-4	0.971	UPSTREAM pum DOWNSTREAM D1 INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	17438099	2R_17438099_SNP [dm3] 2R_21550594_SNP [dm6]	G	A	3.171e^-4	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17438153	2R_17438153_SNP [dm3] 2R_21550648_SNP [dm6]	A	G	3.171e^-4	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2852862	3L_2852862_SNP [dm3] 3L_2852862_SNP [dm6]	T	A	3.188e^-4	0.971	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	7766539	3R_7766539_SNP [dm3] 3R_11940817_SNP [dm6]	G	A	3.190e^-4	0.971	INTRON Cad87A
2R	9021732	2R_9021732_SNP [dm3] 2R_13134227_SNP [dm6]	C	T	3.194e^-4	0.971	SYNONYMOUS_CODING Cap-G	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	13025510	3L_13025510_SNP [dm3] 3L_13032410_SNP [dm6]	A	G	3.203e^-4	0.971	INTRON CG17672 EXON CR45157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	13025511	3L_13025511_SNP [dm3] 3L_13032411_SNP [dm6]	G	A	3.203e^-4	0.971	INTRON CG17672 EXON CR45157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	8000985	3L_8000985_SNP [dm3] 3L_8007885_SNP [dm6]	C	A	3.217e^-4	0.971	INTRON nmo
3R	20433970	3R_20433970_SNP [dm3] 3R_24608248_SNP [dm6]	G	A	3.220e^-4	0.971	INTRON mld
3L	9303739	3L_9303739_SNP [dm3] 3L_9310639_SNP [dm6]	A	T	3.222e^-4	0.971	INTERGENIC
3R	14715439	3R_14715439_SNP [dm3] 3R_18889717_SNP [dm6]	A	C	3.230e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
X	15311537	X_15311537_SNP [dm3] X_15417504_SNP [dm6]	A	T	3.239e^-4	0.971	INTRON Cngl
3L	12308479	3L_12308479_SNP [dm3] 3L_12315379_SNP [dm6]	T	C	3.259e^-4	0.971	INTERGENIC
2R	9032301	2R_9032301_SNP [dm3] 2R_13144796_SNP [dm6]	C	G	3.259e^-4	0.971	DOWNSTREAM Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad
3R	21391464	3R_21391464_SNP [dm3] 3R_25565742_SNP [dm6]	A	G	3.262e^-4	0.971	INTRON msi
2R	5347972	2R_5347972_SNP [dm3] 2R_9460467_SNP [dm6]	T	C	3.264e^-4	0.971	INTRON Camta
2R	9903334	2R_9903334_SNP [dm3] 2R_14015829_SNP [dm6]	C	T	3.269e^-4	0.971	INTRON mam
2L	7694604	2L_7694604_SNP [dm3] 2L_7694604_SNP [dm6]	C	A	3.272e^-4	0.971	SYNONYMOUS_CODING Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8504869	2R_8504869_SNP [dm3] 2R_12617364_SNP [dm6]	A	G	3.273e^-4	0.971	INTRON Galphaq & 1 other
4	1111999	4_1111999_SNP [dm3] 4_1091373_SNP [dm6]	A	C	3.277e^-4	0.971	INTRON sv	transposable element FlyBase
3L	19698867	3L_19698867_SNP [dm3] 3L_19705767_SNP [dm6]	A	T	3.278e^-4	0.971	INTRON serp
3L	12037253	3L_12037253_SNP [dm3] 3L_12044153_SNP [dm6]	T	A	3.282e^-4	0.971	NON_SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
3R	20896962	3R_20896962_SNP [dm3] 3R_25071240_SNP [dm6]	A	G	3.291e^-4	0.971	UTR_5_PRIME CG11836 DOWNSTREAM CG11839 INTRON CG11836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	517422	3L_517422_SNP [dm3] 3L_517422_SNP [dm6]	C	A	3.319e^-4	0.971	INTRON klar
3L	17043951	3L_17043951_SNP [dm3] 3L_17050851_SNP [dm6]	T	C	3.320e^-4	0.971	UPSTREAM rogdi INTRON rogdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	2536411	3L_2536411_SNP [dm3] 3L_2536411_SNP [dm6]	A	T	3.333e^-4	0.971	INTRON Spn
3R	20433814	3R_20433814_DEL [dm3] 3R_24608092_DEL [dm6]	AACA	A	3.341e^-4	0.971	INTRON mld
3R	26550212	3R_26550212_SNP [dm3] 3R_30724490_SNP [dm6]	G	A	3.346e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10425481	3L_10425481_SNP [dm3] 3L_10432381_SNP [dm6]	G	T	3.349e^-4	0.971	UPSTREAM Ir67b DOWNSTREAM Ir67c INTERGENIC
2R	9160972	2R_9160972_SNP [dm3] 2R_13273467_SNP [dm6]	G	A	3.350e^-4	0.971	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3L	12875946	3L_12875946_INS [dm3] 3L_12882846_INS [dm6]	T	TGTATCTAT	3.361e^-4	0.971	INTERGENIC
2L	1673157	2L_1673157_SNP [dm3] 2L_1673157_SNP [dm6]	A	G	3.367e^-4	0.971	INTRON chinmo
X	14219591	X_14219591_SNP [dm3] X_14325558_SNP [dm6]	T	A	3.370e^-4	0.971	INTRON dpr8
2R	20177402	2R_20177402_SNP [dm3] 2R_24289879_SNP [dm6]	A	G	3.376e^-4	0.971	INTRON nvy	TF binding site mE1_TFBS_chinmo
3R	25082244	3R_25082244_SNP [dm3] 3R_29256522_SNP [dm6]	A	G	3.380e^-4	0.971	UTR_5_PRIME CG45544 UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14881793	2R_14881793_SNP [dm3] 2R_18994288_SNP [dm6]	C	T	3.417e^-4	0.971	UPSTREAM snoRNA:abba-a INTRON tn
3R	10264871	3R_10264871_INS [dm3] 3R_14439149_INS [dm6]	A	ATAAT	3.417e^-4	0.971	INTRON cv-c
2R	16300297	2R_16300297_SNP [dm3] 2R_20412792_SNP [dm6]	C	A	3.422e^-4	0.971	INTERGENIC
2L	2177756	2L_2177756_SNP [dm3] 2L_2177756_SNP [dm6]	T	A	3.430e^-4	0.971	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens mE1_TFBS_Trl
3R	1801838	3R_1801838_SNP [dm3] 3R_5976116_SNP [dm6]	C	T	3.436e^-4	0.971	UPSTREAM Obp83a DOWNSTREAM Obp83b INTERGENIC
2R	15320827	2R_15320827_SNP [dm3] 2R_19433322_SNP [dm6]	T	A	3.439e^-4	0.971	SYNONYMOUS_CODING Fak INTRON Fak	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20175435	2R_20175435_SNP [dm3] 2R_24287912_SNP [dm6]	C	T	3.447e^-4	0.971	INTRON nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5321325	X_5321325_SNP [dm3] X_5427292_SNP [dm6]	C	G	3.450e^-4	0.971	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
3L	3942090	3L_3942090_SNP [dm3] 3L_3942090_SNP [dm6]	T	A	3.457e^-4	0.971	UPSTREAM CG14982 DOWNSTREAM CR43916 INTRON CG10863
4	1149871	4_1149871_SNP [dm3] 4_1129245_SNP [dm6]	T	C	3.465e^-4	0.971	INTRON CG11155	transposable element FlyBase
3L	16820934	3L_16820934_SNP [dm3] 3L_16827834_SNP [dm6]	A	T	3.466e^-4	0.971	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3803309	X_3803309_SNP [dm3] X_3909276_SNP [dm6]	A	G	3.468e^-4	0.971	INTRON CG42541
3L	14926353	3L_14926353_SNP [dm3] 3L_14933253_SNP [dm6]	C	T	3.470e^-4	0.971	INTRON DCX-EMAP
2L	9116817	2L_9116817_SNP [dm3] 2L_9116817_SNP [dm6]	C	T	3.481e^-4	0.971	INTERGENIC
3L	8000978	3L_8000978_SNP [dm3] 3L_8007878_SNP [dm6]	T	A	3.482e^-4	0.971	INTRON nmo
2R	20177404	2R_20177404_SNP [dm3] 2R_24289881_SNP [dm6]	A	T	3.487e^-4	0.971	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	16400199	3L_16400199_SNP [dm3] 3L_16407099_SNP [dm6]	G	A	3.491e^-4	0.971	SYNONYMOUS_CODING fax	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	21322380	X_21322380_SNP [dm3] X_21451353_SNP [dm6]	T	C	3.493e^-4	0.971	INTRON CG42343
2L	16493812	2L_16493812_SNP [dm3] 2L_16493812_SNP [dm6]	C	A	3.511e^-4	0.971	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
3L	6076155	3L_6076155_SNP [dm3] 3L_6083055_SNP [dm6]	T	C	3.521e^-4	0.971	UTR_5_PRIME CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1667270	3R_1667270_SNP [dm3] 3R_5841548_SNP [dm6]	T	C	3.527e^-4	0.971	UTR_5_PRIME CG1213 INTRON CG1213
3L	9543678	3L_9543678_SNP [dm3] 3L_9550578_SNP [dm6]	G	A	3.528e^-4	0.971	INTRON CG42673
2R	15006677	2R_15006677_SNP [dm3] 2R_19119172_SNP [dm6]	A	T	3.542e^-4	0.971	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
3R	20602189	3R_20602189_SNP [dm3] 3R_24776467_SNP [dm6]	C	G	3.544e^-4	0.971	INTRON CG42331	TF binding site mE1_TFBS_cad
3R	14510315	3R_14510315_SNP [dm3] 3R_18684593_SNP [dm6]	C	A	3.544e^-4	0.971	SYNONYMOUS_CODING CG7708
2R	7831478	2R_7831478_SNP [dm3] 2R_11943973_SNP [dm6]	A	G	3.545e^-4	0.971	INTRON CG13188
3L	5857282	3L_5857282_SNP [dm3] 3L_5864182_SNP [dm6]	A	C	3.559e^-4	0.971	INTERGENIC
2L	3173682	2L_3173682_SNP [dm3] 2L_3173682_SNP [dm6]	T	C	3.559e^-4	0.971	SYNONYMOUS_CODING CG31698 UPSTREAM CR44003 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26527727	3R_26527727_SNP [dm3] 3R_30702005_SNP [dm6]	C	A	3.562e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10100352	3L_10100352_SNP [dm3] 3L_10107252_SNP [dm6]	G	C	3.564e^-4	0.971	INTRON dpr6	TF binding site mE1_TFBS_cad
2L	13005625	2L_13005625_SNP [dm3] 2L_13005625_SNP [dm6]	G	A	3.570e^-4	0.971	SYNONYMOUS_CODING Tor
2L	9822195	2L_9822195_DEL [dm3] 2L_9822195_DEL [dm6]	GG	G	3.571e^-4	0.971	INTRON nAChRalpha6
3R	17790944	3R_17790944_SNP [dm3] 3R_21965222_SNP [dm6]	G	T	3.573e^-4	0.971	INTRON Eip93F
2R	19100668	2R_19100668_SNP [dm3] 2R_23213145_SNP [dm6]	A	C	3.576e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19100689	2R_19100689_SNP [dm3] 2R_23213166_SNP [dm6]	A	G	3.576e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6407654	2L_6407654_SNP [dm3] 2L_6407654_SNP [dm6]	T	C	3.577e^-4	0.971	INTRON CG42368
3R	22683357	3R_22683357_SNP [dm3] 3R_26857635_SNP [dm6]	G	A	3.582e^-4	0.971	INTRON Lerp
2L	5920922	2L_5920922_SNP [dm3] 2L_5920922_SNP [dm6]	A	G	3.588e^-4	0.971	SYNONYMOUS_CODING bchs
X	16324767	X_16324767_SNP [dm3] X_16430734_SNP [dm6]	C	T	3.588e^-4	0.971	SYNONYMOUS_CODING hang	TF binding site mE1_TFBS_cad
2R	15935023	2R_15935023_SNP [dm3] 2R_20047518_SNP [dm6]	A	T	3.596e^-4	0.971	INTERGENIC
3L	11518954	3L_11518954_DEL [dm3] 3L_11525854_DEL [dm6]	CTTATCATC	C	3.599e^-4	0.971	INTRON Mob2
2R	17519210	2R_17519210_SNP [dm3] 2R_21631705_SNP [dm6]	G	A	3.606e^-4	0.971	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
X	8774827	X_8774827_DEL [dm3] X_8880794_DEL [dm6]	ACAGATA	A	3.618e^-4	0.971	INTRON Moe
2L	14330384	2L_14330384_SNP [dm3] 2L_14330384_SNP [dm6]	C	T	3.618e^-4	0.971	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
3R	9321699	3R_9321699_SNP [dm3] 3R_13495977_SNP [dm6]	T	A	3.623e^-4	0.971	INTERGENIC
X	9386979	X_9386979_SNP [dm3] X_9492946_SNP [dm6]	T	C	3.625e^-4	0.971	INTRON mgl
3R	25351159	3R_25351159_SNP [dm3] 3R_29525437_SNP [dm6]	G	A	3.628e^-4	0.971	INTERGENIC
3L	8001026	3L_8001026_SNP [dm3] 3L_8007926_SNP [dm6]	A	C	3.629e^-4	0.971	INTRON nmo
2R	5347963	2R_5347963_SNP [dm3] 2R_9460458_SNP [dm6]	C	T	3.631e^-4	0.971	INTRON Camta
3L	7019541	3L_7019541_SNP [dm3] 3L_7026441_SNP [dm6]	A	T	3.632e^-4	0.971	INTRON Mp & 1 other
3L	10480869	3L_10480869_SNP [dm3] 3L_10487769_SNP [dm6]	C	A	3.633e^-4	0.971	INTRON A2bp1
2R	11850885	2R_11850885_SNP [dm3] 2R_15963380_SNP [dm6]	T	C	3.637e^-4	0.971	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12125780	2R_12125780_DEL [dm3] 2R_16238275_DEL [dm6]	TT	C	3.642e^-4	0.971	UTR_3_PRIME krimp DOWNSTREAM CG3687
3L	17232727	3L_17232727_SNP [dm3] 3L_17239627_SNP [dm6]	C	A	3.643e^-4	0.971	SYNONYMOUS_CODING CG6512	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12875874	3L_12875874_SNP [dm3] 3L_12882774_SNP [dm6]	T	G	3.645e^-4	0.971	INTERGENIC
3L	14425944	3L_14425944_SNP [dm3] 3L_14432844_SNP [dm6]	A	C	3.656e^-4	0.971	INTRON bbg
3L	9543835	3L_9543835_SNP [dm3] 3L_9550735_SNP [dm6]	T	C	3.658e^-4	0.971	INTRON CG42673
3R	7105503	3R_7105503_SNP [dm3] 3R_11279781_SNP [dm6]	A	C	3.670e^-4	0.971	INTRON CR31386
X	8075623	X_8075623_SNP [dm3] X_8181590_SNP [dm6]	A	G	3.680e^-4	0.971	INTRON sdt
3R	20433862	3R_20433862_SNP [dm3] 3R_24608140_SNP [dm6]	G	A	3.695e^-4	0.971	INTRON mld
3L	4409994	3L_4409994_SNP [dm3] 3L_4409994_SNP [dm6]	C	T	3.699e^-4	0.971	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	3725312	3R_3725312_SNP [dm3] 3R_7899590_SNP [dm6]	T	C	3.701e^-4	0.971	SYNONYMOUS_CODING wtrw INTRON mRpS9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2839171	2L_2839171_SNP [dm3] 2L_2839171_SNP [dm6]	C	T	3.720e^-4	0.971	SYNONYMOUS_CODING Cpr23B UPSTREAM CG2975 DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19581338	3R_19581338_SNP [dm3] 3R_23755616_SNP [dm6]	G	T	3.750e^-4	0.971	SYNONYMOUS_CODING Hrd3 DOWNSTREAM Rpt5
3L	4559425	3L_4559425_SNP [dm3] 3L_4559425_SNP [dm6]	C	T	3.761e^-4	0.971	INTRON CG42540
4	1155675	4_1155675_SNP [dm3] 4_1135049_SNP [dm6]	G	C	3.765e^-4	0.971	UTR_3_PRIME CG11155 INTRON CG11155
3R	23992745	3R_23992745_SNP [dm3] 3R_28167023_SNP [dm6]	G	A	3.771e^-4	0.971	INTRON CG34354
3R	12209483	3R_12209483_SNP [dm3] 3R_16383761_SNP [dm6]	T	A	3.780e^-4	0.971	INTRON ss	regulatory region REDfly_CRMs
2L	13584712	2L_13584712_SNP [dm3] 2L_13584712_SNP [dm6]	T	A	3.783e^-4	0.971	INTRON kuz
2L	9442032	2L_9442032_SNP [dm3] 2L_9442032_SNP [dm6]	C	T	3.794e^-4	0.971	INTRON numb
2R	12093557	2R_12093557_SNP [dm3] 2R_16206052_SNP [dm6]	T	G	3.799e^-4	0.971	UTR_5_PRIME mrj UPSTREAM mrj	TF binding site mE1_TFBS_Trl
X	4242024	X_4242024_SNP [dm3] X_4347991_SNP [dm6]	T	G	3.803e^-4	0.971	UTR_5_PRIME norpA INTRON norpA
3L	8594023	3L_8594023_SNP [dm3] 3L_8600923_SNP [dm6]	A	C	3.815e^-4	0.971	UPSTREAM RpL14 & 2 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10099965	3L_10099965_SNP [dm3] 3L_10106865_SNP [dm6]	T	G	3.816e^-4	0.971	INTRON dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9904877	2R_9904877_SNP [dm3] 2R_14017372_SNP [dm6]	C	G	3.823e^-4	0.971	INTRON mam
2R	17614609	2R_17614609_SNP [dm3] 2R_21727104_SNP [dm6]	C	A	3.825e^-4	0.971	DOWNSTREAM CR44750 INTERGENIC
X	5581019	X_5581019_SNP [dm3] X_5686986_SNP [dm6]	G	T	3.826e^-4	0.971	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17521318	2R_17521318_SNP [dm3] 2R_21633813_SNP [dm6]	A	G	3.855e^-4	0.971	SYNONYMOUS_CODING CG15674 UPSTREAM CG10321 EXON CR42547	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens mE1_TFBS_ttk
2R	5347999	2R_5347999_SNP [dm3] 2R_9460494_SNP [dm6]	T	G	3.860e^-4	0.971	INTRON Camta
3L	1559149	3L_1559149_SNP [dm3] 3L_1559149_SNP [dm6]	C	A	3.866e^-4	0.971	UPSTREAM CG12099 DOWNSTREAM CG7879 INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19100666	2R_19100666_SNP [dm3] 2R_23213143_SNP [dm6]	C	A	3.876e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_inv
3R	7740796	3R_7740796_DEL [dm3] 3R_11915074_DEL [dm6]	TT	T	3.896e^-4	0.971	INTRON Cad87A
2L	15105258	2L_15105258_SNP [dm3] 2L_15105258_SNP [dm6]	G	C	3.911e^-4	0.971	INTERGENIC
X	21321223	X_21321223_SNP [dm3] X_21450196_SNP [dm6]	G	A	3.914e^-4	0.971	INTRON CG42343	TF binding site mE1_TFBS_HSA
2L	8499403	2L_8499403_SNP [dm3] 2L_8499403_SNP [dm6]	G	A	3.922e^-4	0.971	INTRON Dh31
3L	7069627	3L_7069627_SNP [dm3] 3L_7076527_SNP [dm6]	T	A	3.929e^-4	0.971	INTRON CG8641
3L	1559177	3L_1559177_SNP [dm3] 3L_1559177_SNP [dm6]	G	A	3.930e^-4	0.971	NON_SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9354880	3L_9354880_SNP [dm3] 3L_9361780_SNP [dm6]	A	T	3.934e^-4	0.971	UTR_3_PRIME CG34455 UPSTREAM CG34456 DOWNSTREAM Klp67A
2L	3172998	2L_3172998_SNP [dm3] 2L_3172998_SNP [dm6]	C	T	3.936e^-4	0.971	UPSTREAM CR44003 & 1 other DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8391587	3L_8391587_SNP [dm3] 3L_8398487_SNP [dm6]	A	T	3.940e^-4	0.971	INTRON CG7120
2L	3822967	2L_3822967_SNP [dm3] 2L_3822967_SNP [dm6]	G	A	3.946e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	16690842	3L_16690842_SNP [dm3] 3L_16697742_SNP [dm6]	G	A	3.947e^-4	0.971	INTRON Lasp & 1 other EXON CR45179
X	4242375	X_4242375_SNP [dm3] X_4348342_SNP [dm6]	G	T	3.953e^-4	0.971	INTRON norpA
3R	10771229	3R_10771229_SNP [dm3] 3R_14945507_SNP [dm6]	G	A	3.966e^-4	0.971	INTERGENIC
3L	14926408	3L_14926408_SNP [dm3] 3L_14933308_SNP [dm6]	A	T	3.967e^-4	0.971	INTRON DCX-EMAP
2R	17471746	2R_17471746_SNP [dm3] 2R_21584241_SNP [dm6]	T	A	3.967e^-4	0.971	INTRON CG30222
3R	16868031	3R_16868031_SNP [dm3] 3R_21042309_SNP [dm6]	C	T	3.968e^-4	0.971	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12875883	3L_12875883_SNP [dm3] 3L_12882783_SNP [dm6]	T	C	3.982e^-4	0.971	INTERGENIC
3R	14768508	3R_14768508_SNP [dm3] 3R_18942786_SNP [dm6]	C	A	3.982e^-4	0.971	INTRON CG42613
3R	7708352	3R_7708352_SNP [dm3] 3R_11882630_SNP [dm6]	G	A	3.990e^-4	0.971	UPSTREAM CG31368 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	5474474	3L_5474474_SNP [dm3] 3L_5481374_SNP [dm6]	T	A	4.003e^-4	0.971	SYNONYMOUS_CODING CG4835
3R	26187036	3R_26187036_SNP [dm3] 3R_30361314_SNP [dm6]	C	T	4.003e^-4	0.971	SYNONYMOUS_CODING hdc UTR_3_PRIME hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4332986	X_4332986_SNP [dm3] X_4438953_SNP [dm6]	T	G	4.009e^-4	0.971	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	3902318	3L_3902318_SNP [dm3] 3L_3902318_SNP [dm6]	T	C	4.019e^-4	0.971	UPSTREAM Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	770974	X_770974_SNP [dm3] X_876941_SNP [dm6]	T	A	4.020e^-4	0.971	DOWNSTREAM CG11664 INTRON CG43867
X	14219478	X_14219478_SNP [dm3] X_14325445_SNP [dm6]	C	G	4.039e^-4	0.971	INTRON dpr8
2L	12157174	2L_12157174_SNP [dm3] 2L_12157174_SNP [dm6]	A	G	4.061e^-4	0.971	INTRON CG31760
2R	7564258	2R_7564258_SNP [dm3] 2R_11676753_SNP [dm6]	C	T	4.063e^-4	0.971	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
X	5739346	X_5739346_DEL [dm3] X_5845313_DEL [dm6]	AA	A	4.069e^-4	0.971	UTR_5_PRIME CG12729
3L	8382025	3L_8382025_SNP [dm3] 3L_8388925_SNP [dm6]	C	G	4.074e^-4	0.971	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10566429	2R_10566429_SNP [dm3] 2R_14678924_SNP [dm6]	A	G	4.076e^-4	0.971	UPSTREAM CG30480 & 1 other INTRON mspo
3R	20434044	3R_20434044_SNP [dm3] 3R_24608322_SNP [dm6]	A	G	4.083e^-4	0.971	INTRON mld
2L	7100263	2L_7100263_SNP [dm3] 2L_7100263_SNP [dm6]	T	A	4.087e^-4	0.971	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22510012	3R_22510012_SNP [dm3] 3R_26684290_SNP [dm6]	G	C	4.091e^-4	0.971	INTERGENIC
3R	5045788	3R_5045788_SNP [dm3] 3R_9220066_SNP [dm6]	G	A	4.111e^-4	0.971	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1630330	2L_1630330_SNP [dm3] 2L_1630330_SNP [dm6]	T	A	4.112e^-4	0.971	INTERGENIC
2R	20170077	2R_20170077_SNP [dm3] 2R_24282554_SNP [dm6]	C	T	4.112e^-4	0.971	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	14219721	X_14219721_SNP [dm3] X_14325688_SNP [dm6]	A	T	4.117e^-4	0.971	INTRON dpr8
2R	12109170	2R_12109170_DEL [dm3] 2R_16221665_DEL [dm6]	ATTA	A	4.121e^-4	0.971	SPLICE_SITE_DONOR mrj DOWNSTREAM CG7798 INTRON mrj EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26484770	3R_26484770_SNP [dm3] 3R_30659048_SNP [dm6]	G	A	4.127e^-4	0.971	INTERGENIC
X	10026353	X_10026353_SNP [dm3] X_10132320_SNP [dm6]	C	T	4.129e^-4	0.971	INTRON CR44894 & 1 other
3R	25351164	3R_25351164_SNP [dm3] 3R_29525442_SNP [dm6]	A	T	4.143e^-4	0.971	INTERGENIC
2R	8171415	2R_8171415_SNP [dm3] 2R_12283910_SNP [dm6]	T	C	4.144e^-4	0.971	INTRON CG42700
2L	6503339	2L_6503339_SNP [dm3] 2L_6503339_SNP [dm6]	A	T	4.156e^-4	0.971	INTRON CG31637	TF binding site mE1_TFBS_Trl
3L	7069623	3L_7069623_SNP [dm3] 3L_7076523_SNP [dm6]	T	A	4.162e^-4	0.971	INTRON CG8641
3L	9543812	3L_9543812_SNP [dm3] 3L_9550712_SNP [dm6]	C	A	4.173e^-4	0.971	INTRON CG42673
3R	5121779	3R_5121779_SNP [dm3] 3R_9296057_SNP [dm6]	A	T	4.185e^-4	0.971	INTRON CG8861
2R	10194100	2R_10194100_SNP [dm3] 2R_14306595_SNP [dm6]	A	T	4.187e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	14884639	3R_14884639_SNP [dm3] 3R_19058917_SNP [dm6]	C	G	4.209e^-4	0.971	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5739238	X_5739238_INS [dm3] X_5845205_INS [dm6]	T	TATAACAA	4.223e^-4	0.971	UPSTREAM CG12729 INTERGENIC
X	11044350	X_11044350_SNP [dm3] X_11150317_SNP [dm6]	G	A	4.233e^-4	0.971	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	1082664	2L_1082664_SNP [dm3] 2L_1082664_SNP [dm6]	T	G	4.233e^-4	0.971	SPLICE_SITE_REGION Atg4a SYNONYMOUS_CODING Atg4a DOWNSTREAM CG4629	TF binding site mE1_TFBS_inv
X	5739353	X_5739353_DEL [dm3] X_5845320_DEL [dm6]	AACCTTTG	A	4.242e^-4	0.971	UTR_5_PRIME CG12729
3L	16750956	3L_16750956_SNP [dm3] 3L_16757856_SNP [dm6]	T	A	4.244e^-4	0.971	INTERGENIC
X	21505660	X_21505660_SNP [dm3] X_21634633_SNP [dm6]	T	A	4.246e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	17903450	2L_17903450_SNP [dm3] 2L_17903450_SNP [dm6]	C	G	4.254e^-4	0.971	UPSTREAM CR45332 & 1 other INTERGENIC
3L	11407674	3L_11407674_SNP [dm3] 3L_11414574_SNP [dm6]	C	A	4.261e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6519183	X_6519183_SNP [dm3] X_6625150_SNP [dm6]	T	C	4.261e^-4	0.971	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	13178009	3L_13178009_SNP [dm3] 3L_13184909_SNP [dm6]	T	A	4.265e^-4	0.971	INTERGENIC
2R	12125804	2R_12125804_SNP [dm3] 2R_16238299_SNP [dm6]	A	C	4.273e^-4	0.971	UTR_3_PRIME krimp DOWNSTREAM CG3687
X	8075627	X_8075627_SNP [dm3] X_8181594_SNP [dm6]	A	T	4.276e^-4	0.971	INTRON sdt
3L	3811859	3L_3811859_SNP [dm3] 3L_3811859_SNP [dm6]	A	C	4.280e^-4	0.971	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22996965	3R_22996965_SNP [dm3] 3R_27171243_SNP [dm6]	G	A	4.292e^-4	0.971	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
X	6651063	X_6651063_SNP [dm3] X_6757030_SNP [dm6]	G	C	4.298e^-4	0.971	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6519185	X_6519185_DEL [dm3] X_6625152_DEL [dm6]	TAT	T	4.299e^-4	0.971	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	20433874	3R_20433874_SNP [dm3] 3R_24608152_SNP [dm6]	T	A	4.316e^-4	0.971	INTRON mld
3L	21757210	3L_21757210_SNP [dm3] 3L_21764110_SNP [dm6]	G	A	4.318e^-4	0.971	INTRON Syn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12999492	X_12999492_SNP [dm3] X_13105459_SNP [dm6]	A	G	4.320e^-4	0.971	INTRON CG43313
X	9855287	X_9855287_SNP [dm3] X_9961254_SNP [dm6]	A	T	4.324e^-4	0.971	INTERGENIC
3R	10809131	3R_10809131_SNP [dm3] 3R_14983409_SNP [dm6]	G	C	4.326e^-4	0.971	INTERGENIC
2R	14952026	2R_14952026_INS [dm3] 2R_19064521_INS [dm6]	A	AG	4.329e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9895463	2R_9895463_DEL [dm3] 2R_14007958_DEL [dm6]	AAAT	A	4.335e^-4	0.971	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5347960	2R_5347960_SNP [dm3] 2R_9460455_SNP [dm6]	C	T	4.338e^-4	0.971	INTRON Camta
3L	6999476	3L_6999476_SNP [dm3] 3L_7006376_SNP [dm6]	G	T	4.339e^-4	0.971	INTRON Mp
2R	9053618	2R_9053618_SNP [dm3] 2R_13166113_SNP [dm6]	A	G	4.339e^-4	0.971	INTRON GLaz
X	14223975	X_14223975_SNP [dm3] X_14329942_SNP [dm6]	A	T	4.352e^-4	0.971	INTRON dpr8
3L	5958783	3L_5958783_SNP [dm3] 3L_5965683_SNP [dm6]	G	A	4.370e^-4	0.971	INTERGENIC
3L	8000975	3L_8000975_SNP [dm3] 3L_8007875_SNP [dm6]	A	C	4.375e^-4	0.971	INTRON nmo
3R	22436681	3R_22436681_SNP [dm3] 3R_26610959_SNP [dm6]	G	T	4.387e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14881675	2R_14881675_SNP [dm3] 2R_18994170_SNP [dm6]	C	G	4.390e^-4	0.971	UPSTREAM snoRNA:abba-a INTRON tn
2R	3691117	2R_3691117_SNP [dm3] 2R_7803612_SNP [dm6]	G	T	4.392e^-4	0.971	SYNONYMOUS_CODING Nop17l	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	5098083	2L_5098083_SNP [dm3] 2L_5098083_SNP [dm6]	T	A	4.392e^-4	0.971	INTRON CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5098091	2L_5098091_SNP [dm3] 2L_5098091_SNP [dm6]	T	C	4.392e^-4	0.971	INTRON CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14842067	3L_14842067_SNP [dm3] 3L_14848967_SNP [dm6]	T	C	4.396e^-4	0.971	INTRON CG17839
2R	12629309	2R_12629309_SNP [dm3] 2R_16741804_SNP [dm6]	G	C	4.415e^-4	0.971	INTERGENIC
2R	9692049	2R_9692049_SNP [dm3] 2R_13804544_SNP [dm6]	G	T	4.424e^-4	0.971	INTRON Cpr50Cb
3L	10843343	3L_10843343_SNP [dm3] 3L_10850243_SNP [dm6]	G	T	4.426e^-4	0.971	EXON CR45169	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	20471047	3R_20471047_SNP [dm3] 3R_24645325_SNP [dm6]	T	C	4.431e^-4	0.971	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20795628	3R_20795628_SNP [dm3] 3R_24969906_SNP [dm6]	A	G	4.437e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6944742	3L_6944742_SNP [dm3] 3L_6951642_SNP [dm6]	T	G	4.438e^-4	0.971	DOWNSTREAM CG10077 INTRON CG10077
2R	17519244	2R_17519244_SNP [dm3] 2R_21631739_SNP [dm6]	G	T	4.440e^-4	0.971	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
X	6801253	X_6801253_SNP [dm3] X_6907220_SNP [dm6]	A	G	4.454e^-4	0.971	INTERGENIC
3L	16670741	3L_16670741_SNP [dm3] 3L_16677641_SNP [dm6]	A	G	4.466e^-4	0.971	UTR_3_PRIME Lasp & 1 other
2L	5098081	2L_5098081_SNP [dm3] 2L_5098081_SNP [dm6]	A	G	4.469e^-4	0.971	INTRON CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5467731	X_5467731_SNP [dm3] X_5573698_SNP [dm6]	A	G	4.475e^-4	0.971	INTERGENIC
3R	10771570	3R_10771570_SNP [dm3] 3R_14945848_SNP [dm6]	A	T	4.488e^-4	0.971	INTERGENIC
3L	20764595	3L_20764595_SNP [dm3] 3L_20771495_SNP [dm6]	G	A	4.493e^-4	0.971	START_GAINED CG4042 UTR_5_PRIME CG4042 UPSTREAM Pitslre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	8176268	X_8176268_DEL [dm3] X_8282235_DEL [dm6]	ACA	A	4.504e^-4	0.971	UTR_3_PRIME nAChRalpha3 DOWNSTREAM nAChRalpha3
2R	19626270	2R_19626270_SNP [dm3] 2R_23738747_SNP [dm6]	G	A	4.506e^-4	0.971	SYNONYMOUS_CODING egl	TF binding site mE1_TFBS_chinmo
3R	18542154	3R_18542154_SNP [dm3] 3R_22716432_SNP [dm6]	C	T	4.506e^-4	0.971	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9838985	3L_9838985_SNP [dm3] 3L_9845885_SNP [dm6]	A	T	4.510e^-4	0.971	INTRON RasGAP1
2R	12147558	2R_12147558_SNP [dm3] 2R_16260053_SNP [dm6]	G	A	4.522e^-4	0.971	UPSTREAM CngA INTERGENIC
2L	22597625	2L_22597625_SNP [dm3] 2L_22704893_SNP [dm6]	T	A	4.538e^-4	0.971	INTRON CG40006
2L	22597640	2L_22597640_SNP [dm3] 2L_22704908_SNP [dm6]	G	T	4.538e^-4	0.971	INTRON CG40006
2R	16940033	2R_16940033_SNP [dm3] 2R_21052528_SNP [dm6]	A	G	4.540e^-4	0.971	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5783592	2L_5783592_SNP [dm3] 2L_5783592_SNP [dm6]	G	A	4.542e^-4	0.971	UPSTREAM CG31913 INTRON CG9171
3L	16738452	3L_16738452_SNP [dm3] 3L_16745352_SNP [dm6]	G	A	4.542e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11691182	2L_11691182_SNP [dm3] 2L_11691182_SNP [dm6]	C	A	4.551e^-4	0.971	INTERGENIC
2R	12350904	2R_12350904_SNP [dm3] 2R_16463399_SNP [dm6]	A	T	4.553e^-4	0.971	INTERGENIC
3L	12706932	3L_12706932_DEL [dm3] 3L_12713832_DEL [dm6]	GGTGGTG	G	4.557e^-4	0.971	INTERGENIC
3L	13943536	3L_13943536_SNP [dm3] 3L_13950436_SNP [dm6]	C	T	4.557e^-4	0.971	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5064155	X_5064155_SNP [dm3] X_5170122_SNP [dm6]	T	G	4.561e^-4	0.971	INTRON rg & 1 other
2R	19098461	2R_19098461_SNP [dm3] 2R_23210938_SNP [dm6]	A	G	4.565e^-4	0.971	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18964198	3L_18964198_SNP [dm3] 3L_18971098_SNP [dm6]	G	A	4.573e^-4	0.971	INTERGENIC
2L	10540233	2L_10540233_SNP [dm3] 2L_10540233_SNP [dm6]	A	G	4.576e^-4	0.971	INTERGENIC
X	15427149	X_15427149_SNP [dm3] X_15533116_SNP [dm6]	A	T	4.583e^-4	0.971	INTRON Ac13E
2L	10576747	2L_10576747_SNP [dm3] 2L_10576747_SNP [dm6]	T	C	4.587e^-4	0.971	INTRON Trim9 & 1 other
2L	11818287	2L_11818287_SNP [dm3] 2L_11818287_SNP [dm6]	G	T	4.589e^-4	0.971	SYNONYMOUS_CODING Pde1c	TF binding site mE1_TFBS_cad
2L	7692169	2L_7692169_SNP [dm3] 2L_7692169_SNP [dm6]	C	T	4.589e^-4	0.971	NON_SYNONYMOUS_CODING CG7025 UPSTREAM CG43235	TF binding site mE1_TFBS_sens
2R	7332174	2R_7332174_SNP [dm3] 2R_11444669_SNP [dm6]	T	A	4.596e^-4	0.971	INTRON qvr
3R	14287119	3R_14287119_SNP [dm3] 3R_18461397_SNP [dm6]	T	A	4.605e^-4	0.971	INTRON fru
3R	20375181	3R_20375181_SNP [dm3] 3R_24549459_SNP [dm6]	G	T	4.610e^-4	0.971	INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9057201	2R_9057201_SNP [dm3] 2R_13169696_SNP [dm6]	T	C	4.613e^-4	0.971	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site mE1_TFBS_jumu
2R	9768669	2R_9768669_SNP [dm3] 2R_13881164_SNP [dm6]	T	G	4.616e^-4	0.971	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4661144	2R_4661144_SNP [dm3] 2R_8773639_SNP [dm6]	G	C	4.622e^-4	0.971	INTERGENIC
X	14219637	X_14219637_SNP [dm3] X_14325604_SNP [dm6]	A	T	4.628e^-4	0.971	INTRON dpr8
3R	9371923	3R_9371923_SNP [dm3] 3R_13546201_SNP [dm6]	T	A	4.628e^-4	0.971	UPSTREAM CG31337 INTERGENIC
3R	20545959	3R_20545959_SNP [dm3] 3R_24720237_SNP [dm6]	G	A	4.645e^-4	0.971	UPSTREAM CG13630 INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9545858	3L_9545858_SNP [dm3] 3L_9552758_SNP [dm6]	T	C	4.662e^-4	0.971	INTRON CG42673
X	19413048	X_19413048_SNP [dm3] X_19519015_SNP [dm6]	C	G	4.664e^-4	0.971	UTR_3_PRIME l_1_G0156 DOWNSTREAM l_1_G0156 & 1 other
2R	19074356	2R_19074356_SNP [dm3] 2R_23186833_SNP [dm6]	C	A	4.668e^-4	0.971	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1615100	3R_1615100_SNP [dm3] 3R_5789378_SNP [dm6]	T	C	4.683e^-4	0.971	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	9896289	2R_9896289_INS [dm3] 2R_14008784_INS [dm6]	C	CT	4.685e^-4	0.971	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19873173	2R_19873173_SNP [dm3] 2R_23985650_SNP [dm6]	G	A	4.694e^-4	0.971	SYNONYMOUS_CODING Phm UPSTREAM CG30178 DOWNSTREAM Sox14	TF binding site mE1_TFBS_HSA
3L	19926684	3L_19926684_SNP [dm3] 3L_19933584_SNP [dm6]	A	T	4.694e^-4	0.971	UPSTREAM CR45678 DOWNSTREAM RhoGDI INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10214041	3R_10214041_SNP [dm3] 3R_14388319_SNP [dm6]	C	A	4.709e^-4	0.971	INTERGENIC
3L	5470119	3L_5470119_SNP [dm3] 3L_5477019_SNP [dm6]	T	C	4.710e^-4	0.971	INTERGENIC
2R	10865594	2R_10865594_SNP [dm3] 2R_14978089_SNP [dm6]	A	C	4.715e^-4	0.971	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	3938472	2L_3938472_SNP [dm3] 2L_3938472_SNP [dm6]	G	C	4.718e^-4	0.971	INTRON fred
3L	13025055	3L_13025055_SNP [dm3] 3L_13031955_SNP [dm6]	C	T	4.733e^-4	0.971	DOWNSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	14926357	3L_14926357_SNP [dm3] 3L_14933257_SNP [dm6]	G	A	4.745e^-4	0.971	INTRON DCX-EMAP
3L	7377723	3L_7377723_SNP [dm3] 3L_7384623_SNP [dm6]	G	A	4.747e^-4	0.971	INTRON smid	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9692053	2R_9692053_SNP [dm3] 2R_13804548_SNP [dm6]	T	A	4.751e^-4	0.971	INTRON Cpr50Cb
3L	10169267	3L_10169267_SNP [dm3] 3L_10176167_SNP [dm6]	A	G	4.754e^-4	0.971	INTRON dpr10
3L	10169322	3L_10169322_SNP [dm3] 3L_10176222_SNP [dm6]	T	C	4.754e^-4	0.971	INTRON dpr10
3R	1690083	3R_1690083_SNP [dm3] 3R_5864361_SNP [dm6]	G	A	4.755e^-4	0.971	UTR_3_PRIME CG34113
2R	15965600	2R_15965600_SNP [dm3] 2R_20078095_SNP [dm6]	G	T	4.756e^-4	0.971	INTERGENIC
3L	15019683	3L_15019683_DEL [dm3] 3L_15026583_DEL [dm6]	TGCC	T	4.757e^-4	0.971	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
3L	13178005	3L_13178005_SNP [dm3] 3L_13184905_SNP [dm6]	T	C	4.760e^-4	0.971	INTERGENIC
3L	6002035	3L_6002035_SNP [dm3] 3L_6008935_SNP [dm6]	C	T	4.761e^-4	0.971	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	6002311	3L_6002311_SNP [dm3] 3L_6009211_SNP [dm6]	T	G	4.761e^-4	0.971	DOWNSTREAM alphaKap4 INTRON PVRAP	TF binding site mE1_TFBS_sbb
2L	9116800	2L_9116800_SNP [dm3] 2L_9116800_SNP [dm6]	T	A	4.762e^-4	0.971	INTERGENIC
3L	9830136	3L_9830136_SNP [dm3] 3L_9837036_SNP [dm6]	T	C	4.764e^-4	0.971	UPSTREAM I-2 DOWNSTREAM Cdk8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	15965478	2R_15965478_SNP [dm3] 2R_20077973_SNP [dm6]	C	T	4.770e^-4	0.971	INTERGENIC
2R	17437396	2R_17437396_SNP [dm3] 2R_21549891_SNP [dm6]	A	G	4.772e^-4	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	516680	3L_516680_SNP [dm3] 3L_516680_SNP [dm6]	A	G	4.774e^-4	0.971	INTRON klar
X	5064453	X_5064453_SNP [dm3] X_5170420_SNP [dm6]	C	T	4.780e^-4	0.971	INTRON rg & 1 other
X	16359482	X_16359482_SNP [dm3] X_16465449_SNP [dm6]	A	G	4.785e^-4	0.971	INTRON para
X	770259	X_770259_SNP [dm3] X_876226_SNP [dm6]	G	A	4.791e^-4	0.971	SYNONYMOUS_CODING CG11664 INTRON CG43867
2R	16939364	2R_16939364_SNP [dm3] 2R_21051859_SNP [dm6]	G	A	4.792e^-4	0.971	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8391703	3L_8391703_SNP [dm3] 3L_8398603_SNP [dm6]	T	A	4.792e^-4	0.971	INTRON CG7120
2R	10603181	2R_10603181_SNP [dm3] 2R_14715676_SNP [dm6]	G	C	4.792e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5098074	2L_5098074_DEL [dm3] 2L_5098074_DEL [dm6]	TA	T	4.793e^-4	0.971	INTRON CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9345082	2L_9345082_SNP [dm3] 2L_9345082_SNP [dm6]	A	G	4.800e^-4	0.971	DOWNSTREAM CG3748 INTERGENIC
3L	5594592	3L_5594592_SNP [dm3] 3L_5601492_SNP [dm6]	C	T	4.801e^-4	0.971	UTR_3_PRIME CG10590
X	16904608	X_16904608_SNP [dm3] X_17010575_SNP [dm6]	A	C	4.803e^-4	0.971	INTRON CG45002
3L	3942278	3L_3942278_SNP [dm3] 3L_3942278_SNP [dm6]	T	A	4.818e^-4	0.971	SPLICE_SITE_REGION CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916 INTRON CG10863
3L	21442544	3L_21442544_INS [dm3] 3L_21449444_INS [dm6]	T	TGTT	4.820e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7773915	2L_7773915_SNP [dm3] 2L_7773915_SNP [dm6]	T	C	4.824e^-4	0.971	INTRON CG7191
3R	26907752	3R_26907752_SNP [dm3] 3R_31082030_SNP [dm6]	T	G	4.830e^-4	0.971	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24296691	3R_24296691_SNP [dm3] 3R_28470969_SNP [dm6]	A	G	4.841e^-4	0.971	INTRON beat-VI
3R	23860598	3R_23860598_INS [dm3] 3R_28034876_INS [dm6]	C	CCC	4.846e^-4	0.971	INTRON CG34362
3R	5028335	3R_5028335_SNP [dm3] 3R_9202613_SNP [dm6]	T	C	4.847e^-4	0.971	INTRON pum
3L	9355175	3L_9355175_SNP [dm3] 3L_9362075_SNP [dm6]	T	C	4.860e^-4	0.971	UPSTREAM CG34456 DOWNSTREAM Klp67A & 1 other INTERGENIC
3R	25118089	3R_25118089_SNP [dm3] 3R_29292367_SNP [dm6]	T	C	4.861e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17438545	2R_17438545_SNP [dm3] 2R_21551040_SNP [dm6]	A	G	4.866e^-4	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1902214	2L_1902214_SNP [dm3] 2L_1902214_SNP [dm6]	A	G	4.867e^-4	0.971	INTRON CG7337
X	6519192	X_6519192_SNP [dm3] X_6625159_SNP [dm6]	G	A	4.868e^-4	0.971	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	5040170	X_5040170_SNP [dm3] X_5146137_SNP [dm6]	C	A	4.876e^-4	0.971	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2875731	3L_2875731_INS [dm3] 3L_2875731_INS [dm6]	A	ATTA	4.876e^-4	0.971	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	720190	2L_720190_SNP [dm3] 2L_720190_SNP [dm6]	A	G	4.877e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12927793	2R_12927793_SNP [dm3] 2R_17040288_SNP [dm6]	A	G	4.889e^-4	0.971	INTRON RhoGEF2 EXON CR45145
X	6519179	X_6519179_SNP [dm3] X_6625146_SNP [dm6]	T	A	4.898e^-4	0.971	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	8830103	X_8830103_SNP [dm3] X_8936070_SNP [dm6]	G	A	4.902e^-4	0.971	INTRON rdgA
3L	16652578	3L_16652578_SNP [dm3] 3L_16659478_SNP [dm6]	C	A	4.905e^-4	0.971	INTRON Baldspot	TF binding site BDTNP1_TFBS_dl
2L	10356234	2L_10356234_SNP [dm3] 2L_10356234_SNP [dm6]	A	T	4.907e^-4	0.971	NON_SYNONYMOUS_CODING CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2347925	2L_2347925_SNP [dm3] 2L_2347925_SNP [dm6]	C	T	4.919e^-4	0.971	INTRON CG9967 & 1 other
3R	14936563	3R_14936563_SNP [dm3] 3R_19110841_SNP [dm6]	G	T	4.923e^-4	0.971	INTRON CG6040
3L	2848835	3L_2848835_SNP [dm3] 3L_2848835_SNP [dm6]	G	C	4.931e^-4	0.971	INTRON CG43444	TF binding site mE1_TFBS_cad
2R	12187969	2R_12187969_SNP [dm3] 2R_16300464_SNP [dm6]	T	A	4.938e^-4	0.971	EXON CR45232
2R	15104587	2R_15104587_SNP [dm3] 2R_19217082_SNP [dm6]	T	A	4.940e^-4	0.971	INTRON hppy
2R	14410977	2R_14410977_SNP [dm3] 2R_18523472_SNP [dm6]	A	G	4.941e^-4	0.971	UTR_3_PRIME CG43066 INTRON CG43066
2L	6829342	2L_6829342_SNP [dm3] 2L_6829342_SNP [dm6]	G	A	4.944e^-4	0.971	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	12607505	3L_12607505_SNP [dm3] 3L_12614405_SNP [dm6]	C	A	4.947e^-4	0.971	INTRON caup	TF binding site mE1_TFBS_Stat92E
X	8830098	X_8830098_SNP [dm3] X_8936065_SNP [dm6]	T	C	4.957e^-4	0.971	INTRON rdgA
2R	9046026	2R_9046026_SNP [dm3] 2R_13158521_SNP [dm6]	A	G	4.959e^-4	0.971	UPSTREAM CG34439 & 1 other INTRON TppII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	19095393	2R_19095393_SNP [dm3] 2R_23207870_SNP [dm6]	C	G	4.963e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	17150438	X_17150438_SNP [dm3] X_17256405_SNP [dm6]	G	T	4.970e^-4	0.971	INTRON f
3R	3817677	3R_3817677_SNP [dm3] 3R_7991955_SNP [dm6]	G	C	4.986e^-4	0.971	INTRON CG2781
2R	11829316	2R_11829316_DEL [dm3] 2R_15941811_DEL [dm6]	CGACTCTATTTC...	C	4.989e^-4	0.971	UPSTREAM CG8299 INTERGENIC
2R	8198570	2R_8198570_SNP [dm3] 2R_12311065_SNP [dm6]	G	A	5.000e^-4	0.971	NON_SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
2L	10100175	2L_10100175_SNP [dm3] 2L_10100175_SNP [dm6]	A	G	5.001e^-4	0.971	INTRON CG34109 & 1 other
3L	9355412	3L_9355412_SNP [dm3] 3L_9362312_SNP [dm6]	C	T	5.010e^-4	0.971	SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3L	6001812	3L_6001812_SNP [dm3] 3L_6008712_SNP [dm6]	G	A	5.026e^-4	0.971	DOWNSTREAM alphaKap4 INTRON PVRAP
3R	14438744	3R_14438744_SNP [dm3] 3R_18613022_SNP [dm6]	T	C	5.037e^-4	0.971	INTRON qin & 1 other
2R	20401075	2R_20401075_SNP [dm3] 2R_24513552_SNP [dm6]	A	G	5.041e^-4	0.971	INTRON Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16978644	2R_16978644_SNP [dm3] 2R_21091139_SNP [dm6]	G	C	5.044e^-4	0.971	UPSTREAM Rbpn-5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12158083	2L_12158083_SNP [dm3] 2L_12158083_SNP [dm6]	T	A	5.048e^-4	0.971	INTRON CG31760
2L	4417301	2L_4417301_SNP [dm3] 2L_4417301_SNP [dm6]	C	T	5.058e^-4	0.971	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9056200	3L_9056200_SNP [dm3] 3L_9063100_SNP [dm6]	G	A	5.059e^-4	0.971	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1
2L	7100227	2L_7100227_DEL [dm3] 2L_7100227_DEL [dm6]	AGA	A	5.065e^-4	0.971	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8000976	3L_8000976_SNP [dm3] 3L_8007876_SNP [dm6]	C	G	5.068e^-4	0.971	INTRON nmo
3L	10837394	3L_10837394_SNP [dm3] 3L_10844294_SNP [dm6]	C	T	5.071e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	4667735	3L_4667735_SNP [dm3] 3L_4667735_SNP [dm6]	G	T	5.075e^-4	0.971	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_twi
X	6652568	X_6652568_SNP [dm3] X_6758535_SNP [dm6]	C	T	5.093e^-4	0.971	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	9839068	3L_9839068_DEL [dm3] 3L_9845968_DEL [dm6]	CGC	C	5.107e^-4	0.971	INTRON RasGAP1
2R	10194096	2R_10194096_SNP [dm3] 2R_14306591_SNP [dm6]	T	C	5.117e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	9137377	2R_9137377_SNP [dm3] 2R_13249872_SNP [dm6]	T	A	5.118e^-4	0.971	DOWNSTREAM Mp20 INTRON CG4712
2L	19527065	2L_19527065_SNP [dm3] 2L_19527065_SNP [dm6]	C	T	5.123e^-4	0.971	UTR_3_PRIME CG10165 UPSTREAM CG10166 DOWNSTREAM CG10165 INTRON CG10137
3L	14332811	3L_14332811_SNP [dm3] 3L_14339711_SNP [dm6]	T	A	5.127e^-4	0.971	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16594265	2L_16594265_SNP [dm3] 2L_16594265_SNP [dm6]	A	C	5.129e^-4	0.971	INTRON CG42389
X	12981232	X_12981232_SNP [dm3] X_13087199_SNP [dm6]	T	A	5.130e^-4	0.971	INTRON hep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16599745	2L_16599745_SNP [dm3] 2L_16599745_SNP [dm6]	T	G	5.134e^-4	0.971	INTRON CG42389
2L	9438937	2L_9438937_SNP [dm3] 2L_9438937_SNP [dm6]	T	A	5.137e^-4	0.971	INTRON numb
3L	2850850	3L_2850850_SNP [dm3] 3L_2850850_SNP [dm6]	T	A	5.137e^-4	0.971	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	26102701	3R_26102701_SNP [dm3] 3R_30276979_SNP [dm6]	A	C	5.137e^-4	0.971	UPSTREAM hdc INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26085708	3R_26085708_SNP [dm3] 3R_30259986_SNP [dm6]	C	T	5.139e^-4	0.971	INTERGENIC
X	12389644	X_12389644_SNP [dm3] X_12495611_SNP [dm6]	A	G	5.152e^-4	0.971	SYNONYMOUS_CODING Mks1
2R	9159777	2R_9159777_SNP [dm3] 2R_13272272_SNP [dm6]	T	C	5.152e^-4	0.971	INTRON Dh31-R
2R	10710310	2R_10710310_SNP [dm3] 2R_14822805_SNP [dm6]	G	A	5.153e^-4	0.971	DOWNSTREAM CR45329 INTERGENIC
3L	6753598	3L_6753598_SNP [dm3] 3L_6760498_SNP [dm6]	A	C	5.165e^-4	0.971	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19332454	2L_19332454_SNP [dm3] 2L_19332454_SNP [dm6]	A	C	5.166e^-4	0.971	INTERGENIC
X	18482711	X_18482711_SNP [dm3] X_18588678_SNP [dm6]	C	G	5.180e^-4	0.971	INTERGENIC
X	5040110	X_5040110_SNP [dm3] X_5146077_SNP [dm6]	T	C	5.203e^-4	0.971	INTRON rg & 1 other
2L	18092516	2L_18092516_SNP [dm3] 2L_18092516_SNP [dm6]	T	A	5.204e^-4	0.971	UPSTREAM CG15153 INTERGENIC
2L	18092530	2L_18092530_SNP [dm3] 2L_18092530_SNP [dm6]	C	A	5.204e^-4	0.971	UPSTREAM CG15153 INTERGENIC
2R	14992663	2R_14992663_SNP [dm3] 2R_19105158_SNP [dm6]	T	G	5.219e^-4	0.971	INTRON 5-HT1A
2R	19706107	2R_19706107_SNP [dm3] 2R_23818584_SNP [dm6]	A	C	5.220e^-4	0.971	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
2R	17437411	2R_17437411_SNP [dm3] 2R_21549906_SNP [dm6]	G	C	5.224e^-4	0.971	INTRON Egfr	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15006693	2R_15006693_SNP [dm3] 2R_19119188_SNP [dm6]	C	A	5.225e^-4	0.971	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
3L	12000962	3L_12000962_SNP [dm3] 3L_12007862_SNP [dm6]	T	G	5.235e^-4	0.971	UTR_3_PRIME CG6928 DOWNSTREAM rols
2R	11443563	2R_11443563_SNP [dm3] 2R_15556058_SNP [dm6]	G	T	5.238e^-4	0.971	UPSTREAM CG12963 INTRON CG12963
3R	26156491	3R_26156491_SNP [dm3] 3R_30330769_SNP [dm6]	G	A	5.241e^-4	0.971	INTRON hdc
3R	22656343	3R_22656343_SNP [dm3] 3R_26830621_SNP [dm6]	A	C	5.250e^-4	0.971	INTRON Tl
3L	16666928	3L_16666928_SNP [dm3] 3L_16673828_SNP [dm6]	C	A	5.255e^-4	0.971	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	10837270	3L_10837270_SNP [dm3] 3L_10844170_SNP [dm6]	G	A	5.259e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	20937232	3R_20937232_SNP [dm3] 3R_25111510_SNP [dm6]	G	A	5.262e^-4	0.971	SYNONYMOUS_CODING CG13650	TF binding site mE1_TFBS_cad
2R	19990694	2R_19990694_SNP [dm3] 2R_24103171_SNP [dm6]	A	C	5.267e^-4	0.971	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad
3R	22477073	3R_22477073_SNP [dm3] 3R_26651351_SNP [dm6]	C	T	5.271e^-4	0.971	SYNONYMOUS_CODING beat-VII
3R	26896068	3R_26896068_SNP [dm3] 3R_31070346_SNP [dm6]	C	T	5.275e^-4	0.971	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2R	19093395	2R_19093395_SNP [dm3] 2R_23205872_SNP [dm6]	G	A	5.277e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3R	25512797	3R_25512797_SNP [dm3] 3R_29687075_SNP [dm6]	T	C	5.278e^-4	0.971	UPSTREAM Obp99c INTRON Obp99c
X	3998776	X_3998776_SNP [dm3] X_4104743_SNP [dm6]	C	T	5.290e^-4	0.971	SYNONYMOUS_CODING brn UPSTREAM Xpac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20408238	2R_20408238_SNP [dm3] 2R_24520715_SNP [dm6]	A	G	5.296e^-4	0.971	SYNONYMOUS_CODING Ir60d UPSTREAM Ir60f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3173287	2L_3173287_SNP [dm3] 2L_3173287_SNP [dm6]	C	A	5.300e^-4	0.971	UTR_3_PRIME CG31698 UPSTREAM CR44003 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	1549026	3R_1549026_DEL [dm3] 3R_5723304_DEL [dm6]	AATCCCACA	A	5.306e^-4	0.971	UPSTREAM CR44924 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_Kr
X	11833885	X_11833885_SNP [dm3] X_11939852_SNP [dm6]	A	G	5.308e^-4	0.971	SYNONYMOUS_CODING cac
2L	7772683	2L_7772683_DEL [dm3] 2L_7772683_DEL [dm6]	AA	A	5.316e^-4	0.971	INTRON CG7191	TF binding site BDTNP1_TFBS_twi
X	11045103	X_11045103_SNP [dm3] X_11151070_SNP [dm6]	A	G	5.317e^-4	0.971	SYNONYMOUS_CODING Lint-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11077089	3R_11077089_SNP [dm3] 3R_15251367_SNP [dm6]	C	T	5.319e^-4	0.971	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21322374	X_21322374_SNP [dm3] X_21451347_SNP [dm6]	C	A	5.319e^-4	0.971	INTRON CG42343
3R	22458144	3R_22458144_SNP [dm3] 3R_26632422_SNP [dm6]	A	T	5.329e^-4	0.971	SYNONYMOUS_CODING TwdlN	TF binding site mE1_TFBS_HSA
2L	10043836	2L_10043836_SNP [dm3] 2L_10043836_SNP [dm6]	T	G	5.330e^-4	0.971	INTERGENIC
X	17327080	X_17327080_SNP [dm3] X_17433047_SNP [dm6]	A	G	5.336e^-4	0.971	INTRON CG12994
X	7004530	X_7004530_SNP [dm3] X_7110497_SNP [dm6]	A	C	5.338e^-4	0.971	UPSTREAM fz4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6009827	3L_6009827_SNP [dm3] 3L_6016727_SNP [dm6]	G	A	5.362e^-4	0.971	INTRON PVRAP
2L	8760484	2L_8760484_SNP [dm3] 2L_8760484_SNP [dm6]	C	G	5.364e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22455435	3R_22455435_SNP [dm3] 3R_26629713_SNP [dm6]	C	T	5.366e^-4	0.971	UPSTREAM TwdlK & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10703733	3L_10703733_DEL [dm3] 3L_10710633_DEL [dm6]	AA	A	5.372e^-4	0.971	INTERGENIC
2R	3464501	2R_3464501_SNP [dm3] 2R_7576996_SNP [dm6]	T	C	5.376e^-4	0.971	SYNONYMOUS_CODING Vps13
2R	6623975	2R_6623975_SNP [dm3] 2R_10736470_SNP [dm6]	A	G	5.383e^-4	0.971	INTRON CG7220
2R	12297127	2R_12297127_SNP [dm3] 2R_16409622_SNP [dm6]	C	T	5.396e^-4	0.971	INTRON Sema-2b
3L	16736475	3L_16736475_SNP [dm3] 3L_16743375_SNP [dm6]	G	A	5.416e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18655533	2L_18655533_SNP [dm3] 2L_18655533_SNP [dm6]	G	T	5.417e^-4	0.971	INTRON MESR3
3R	26894701	3R_26894701_SNP [dm3] 3R_31068979_SNP [dm6]	C	T	5.427e^-4	0.971	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	14291748	2L_14291748_DEL [dm3] 2L_14291748_DEL [dm6]	CACTATGTTTC...	C	5.428e^-4	0.971	INTRON wb EXON CR43639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11842427	2R_11842427_SNP [dm3] 2R_15954922_SNP [dm6]	A	T	5.430e^-4	0.971	UPSTREAM CG8366 INTRON Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk
3L	18944007	3L_18944007_SNP [dm3] 3L_18950907_SNP [dm6]	T	A	5.431e^-4	0.971	INTRON CG6836
3L	3968195	3L_3968195_SNP [dm3] 3L_3968195_SNP [dm6]	C	T	5.432e^-4	0.971	INTERGENIC
3R	25512796	3R_25512796_SNP [dm3] 3R_29687074_SNP [dm6]	G	A	5.450e^-4	0.971	UPSTREAM Obp99c INTRON Obp99c
3L	7455356	3L_7455356_SNP [dm3] 3L_7462256_SNP [dm6]	G	A	5.473e^-4	0.971	INTERGENIC
3R	7797542	3R_7797542_SNP [dm3] 3R_11971820_SNP [dm6]	A	G	5.482e^-4	0.971	SYNONYMOUS_CODING GC2 UTR_5_PRIME GC2 DOWNSTREAM GC1
3L	17220227	3L_17220227_SNP [dm3] 3L_17227127_SNP [dm6]	G	A	5.482e^-4	0.971	INTRON Rbp6
3R	17021058	3R_17021058_SNP [dm3] 3R_21195336_SNP [dm6]	C	A	5.497e^-4	0.971	INTRON SNF4Agamma
X	5321328	X_5321328_SNP [dm3] X_5427295_SNP [dm6]	A	C	5.497e^-4	0.971	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
3L	10167431	3L_10167431_SNP [dm3] 3L_10174331_SNP [dm6]	T	A	5.498e^-4	0.971	INTRON dpr10
2R	10566543	2R_10566543_SNP [dm3] 2R_14679038_SNP [dm6]	C	T	5.499e^-4	0.971	UPSTREAM CG30480 & 1 other INTRON mspo
3L	11423005	3L_11423005_SNP [dm3] 3L_11429905_SNP [dm6]	A	G	5.499e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8680649	3L_8680649_SNP [dm3] 3L_8687549_SNP [dm6]	G	T	5.499e^-4	0.971	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11482824	3L_11482824_SNP [dm3] 3L_11489724_SNP [dm6]	C	A	5.504e^-4	0.971	INTRON chrb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12682358	3L_12682358_SNP [dm3] 3L_12689258_SNP [dm6]	T	A	5.505e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22272223	3R_22272223_SNP [dm3] 3R_26446501_SNP [dm6]	A	C	5.509e^-4	0.971	INTRON tx
2L	603032	2L_603032_SNP [dm3] 2L_603032_SNP [dm6]	T	A	5.516e^-4	0.971	INTRON CG13689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	16756818	2R_16756818_SNP [dm3] 2R_20869313_SNP [dm6]	T	A	5.526e^-4	0.971	UTR_5_PRIME IM4
2R	11852405	2R_11852405_SNP [dm3] 2R_15964900_SNP [dm6]	C	A	5.552e^-4	0.971	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3172785	2L_3172785_SNP [dm3] 2L_3172785_SNP [dm6]	A	G	5.560e^-4	0.971	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	16742250	3L_16742250_SNP [dm3] 3L_16749150_SNP [dm6]	T	C	5.574e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10478310	3L_10478310_SNP [dm3] 3L_10485210_SNP [dm6]	T	A	5.580e^-4	0.971	INTRON A2bp1
3L	12726220	3L_12726220_DEL [dm3] 3L_12733120_DEL [dm6]	ATA	A	5.587e^-4	0.971	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	10495364	3L_10495364_SNP [dm3] 3L_10502264_SNP [dm6]	G	A	5.589e^-4	0.971	INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	2310356	3L_2310356_SNP [dm3] 3L_2310356_SNP [dm6]	G	A	5.595e^-4	0.971	INTERGENIC
X	19273451	X_19273451_SNP [dm3] X_19379418_SNP [dm6]	C	T	5.596e^-4	0.971	INTRON kek5
3L	18446444	3L_18446444_SNP [dm3] 3L_18453344_SNP [dm6]	A	C	5.597e^-4	0.971	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5347998	2R_5347998_SNP [dm3] 2R_9460493_SNP [dm6]	C	T	5.605e^-4	0.971	INTRON Camta
3L	12939805	3L_12939805_INS [dm3] 3L_12946705_INS [dm6]	G	GAAAA	5.628e^-4	0.971	INTERGENIC
3L	13236772	3L_13236772_SNP [dm3] 3L_13243672_SNP [dm6]	C	T	5.632e^-4	0.971	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12109600	2R_12109600_SNP [dm3] 2R_16222095_SNP [dm6]	A	T	5.634e^-4	0.971	UPSTREAM mrj DOWNSTREAM CG7798 INTRON CR43898	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13478821	3R_13478821_SNP [dm3] 3R_17653099_SNP [dm6]	T	G	5.638e^-4	0.971	INTRON CG14322 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	9351424	3L_9351424_SNP [dm3] 3L_9358324_SNP [dm6]	A	T	5.655e^-4	0.971	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3732973	3L_3732973_INS [dm3] 3L_3732973_INS [dm6]	A	AA	5.663e^-4	0.971	INTRON CG32264
2L	3621370	2L_3621370_SNP [dm3] 2L_3621370_SNP [dm6]	G	A	5.673e^-4	0.971	UTR_3_PRIME Dot DOWNSTREAM for & 1 other INTRON CG15418
2R	19186141	2R_19186141_SNP [dm3] 2R_23298618_SNP [dm6]	G	A	5.676e^-4	0.971	INTERGENIC
2R	19877768	2R_19877768_SNP [dm3] 2R_23990245_SNP [dm6]	C	T	5.678e^-4	0.971	SYNONYMOUS_CODING Pask	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3304200	X_3304200_SNP [dm3] X_3410167_SNP [dm6]	G	T	5.679e^-4	0.971	INTRON CR44999 & 1 other
3R	7108951	3R_7108951_SNP [dm3] 3R_11283229_SNP [dm6]	T	C	5.682e^-4	0.971	INTRON CR31386
2L	10557714	2L_10557714_SNP [dm3] 2L_10557714_SNP [dm6]	C	T	5.686e^-4	0.971	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22606048	3R_22606048_SNP [dm3] 3R_26780326_SNP [dm6]	A	G	5.708e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11775735	3L_11775735_SNP [dm3] 3L_11782635_SNP [dm6]	T	C	5.712e^-4	0.971	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10477912	3L_10477912_SNP [dm3] 3L_10484812_SNP [dm6]	C	G	5.714e^-4	0.971	INTRON A2bp1
X	5844468	X_5844468_SNP [dm3] X_5950435_SNP [dm6]	T	C	5.716e^-4	0.971	SYNONYMOUS_CODING CG32755 DOWNSTREAM CG6041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8075630	X_8075630_DEL [dm3] X_8181597_DEL [dm6]	AATGCCCCAAGAC...	A	5.720e^-4	0.971	INTRON sdt
2L	11044965	2L_11044965_SNP [dm3] 2L_11044965_SNP [dm6]	G	T	5.722e^-4	0.971	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21310585	X_21310585_SNP [dm3] X_21439558_SNP [dm6]	G	C	5.729e^-4	0.971	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	2144916	3L_2144916_DEL [dm3] 3L_2144916_DEL [dm6]	CTCAC	C	5.729e^-4	0.971	INTRON zormin
2R	8492785	2R_8492785_SNP [dm3] 2R_12605280_SNP [dm6]	G	C	5.731e^-4	0.971	INTRON Amph
2L	19522374	2L_19522374_SNP [dm3] 2L_19522374_SNP [dm6]	C	G	5.739e^-4	0.971	INTRON CG10132	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17060243	3R_17060243_SNP [dm3] 3R_21234521_SNP [dm6]	G	T	5.740e^-4	0.971	INTRON e	regulatory region REDfly_CRMs
2R	21059531	2R_21059531_SNP [dm3] 2R_25172008_SNP [dm6]	A	T	5.741e^-4	0.971	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
X	12209408	X_12209408_SNP [dm3] X_12315375_SNP [dm6]	A	G	5.752e^-4	0.971	INTRON Ten-a

By genomic position
Variant impact
Gene name

PE_FracDead_3d phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results