DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.579e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	4.8549	0.0883

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2452 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13057297	2L_13057297_SNP [dm3] 2L_13057297_SNP [dm6]	G	T	3.303e^-7	0.601	INTRON CG9932
2L	13057290	2L_13057290_SNP [dm3] 2L_13057290_SNP [dm6]	A	T	6.988e^-7	0.601	INTRON CG9932
3L	9411416	3L_9411416_SNP [dm3] 3L_9418316_SNP [dm6]	C	A	1.445e^-6	0.601	UPSTREAM CG3982 INTRON CG3967
2L	13057287	2L_13057287_INS [dm3] 2L_13057287_INS [dm6]	A	ATAATCG	1.527e^-6	0.601	INTRON CG9932
2L	16915231	2L_16915231_SNP [dm3] 2L_16915231_SNP [dm6]	G	T	2.803e^-6	0.601	SYNONYMOUS_CODING tweek
3L	2471233	3L_2471233_SNP [dm3] 3L_2471233_SNP [dm6]	A	G	2.954e^-6	0.601	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	2325789	X_2325789_SNP [dm3] X_2431756_SNP [dm6]	A	T	3.070e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	13056247	2L_13056247_SNP [dm3] 2L_13056247_SNP [dm6]	G	A	3.267e^-6	0.601	INTRON CG9932
X	13011743	X_13011743_SNP [dm3] X_13117710_SNP [dm6]	T	C	3.370e^-6	0.601	INTRON CG42237
2L	12490737	2L_12490737_SNP [dm3] 2L_12490737_SNP [dm6]	G	C	3.710e^-6	0.601	INTRON bun
3R	17015706	3R_17015706_SNP [dm3] 3R_21189984_SNP [dm6]	G	A	3.848e^-6	0.601	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3R	17187890	3R_17187890_SNP [dm3] 3R_21362168_SNP [dm6]	T	G	4.268e^-6	0.601	DOWNSTREAM mod_mdg4_ & 5 others INTRON mod_mdg4_
2L	14930352	2L_14930352_SNP [dm3] 2L_14930352_SNP [dm6]	G	C	4.299e^-6	0.601	UTR_3_PRIME CG3491 INTRON CG42313
2R	17670388	2R_17670388_SNP [dm3] 2R_21782883_SNP [dm6]	G	C	4.738e^-6	0.601	INTERGENIC
X	6151339	X_6151339_SNP [dm3] X_6257306_SNP [dm6]	C	G	4.836e^-6	0.601	UTR_3_PRIME Spx DOWNSTREAM schlank
2L	9837423	2L_9837423_SNP [dm3] 2L_9837423_SNP [dm6]	T	C	5.129e^-6	0.601	INTRON nAChRalpha6
3R	26762992	3R_26762992_SNP [dm3] 3R_30937270_SNP [dm6]	T	G	6.002e^-6	0.662	UPSTREAM CG15549 & 1 other INTERGENIC
3R	16652197	3R_16652197_SNP [dm3] 3R_20826475_SNP [dm6]	T	A	6.497e^-6	0.663	UPSTREAM CR44047 INTRON AdSS	TF binding site mE1_TFBS_cad
3L	8761596	3L_8761596_SNP [dm3] 3L_8768496_SNP [dm6]	A	C	8.313e^-6	0.663	INTRON Fhos
3R	10312476	3R_10312476_SNP [dm3] 3R_14486754_SNP [dm6]	A	G	8.417e^-6	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16875987	2L_16875987_SNP [dm3] 2L_16875987_SNP [dm6]	A	G	8.755e^-6	0.663	INTRON CR31781
X	20859139	X_20859139_SNP [dm3] X_20988112_SNP [dm6]	G	C	8.969e^-6	0.663	INTERGENIC
3R	26762738	3R_26762738_SNP [dm3] 3R_30937016_SNP [dm6]	T	C	9.647e^-6	0.663	NON_SYNONYMOUS_CODING CG15550 UPSTREAM CG15549	TF binding site mE1_TFBS_chinmo
3L	10308811	3L_10308811_SNP [dm3] 3L_10315711_SNP [dm6]	G	A	1.008e^-5	0.663	INTERGENIC
2L	13120828	2L_13120828_SNP [dm3] 2L_13120828_SNP [dm6]	T	A	1.008e^-5	0.663	DOWNSTREAM CG43050 INTERGENIC
3L	2470520	3L_2470520_SNP [dm3] 3L_2470520_SNP [dm6]	T	C	1.042e^-5	0.663	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	2470533	3L_2470533_SNP [dm3] 3L_2470533_SNP [dm6]	T	C	1.073e^-5	0.663	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	5255114	2L_5255114_SNP [dm3] 2L_5255114_SNP [dm6]	A	C	1.107e^-5	0.663	INTRON tkv
2L	13057314	2L_13057314_INS [dm3] 2L_13057314_INS [dm6]	T	CG	1.162e^-5	0.663	INTRON CG9932
X	12901906	X_12901906_SNP [dm3] X_13007873_SNP [dm6]	A	T	1.171e^-5	0.663	INTRON rad
2L	12371280	2L_12371280_SNP [dm3] 2L_12371280_SNP [dm6]	T	A	1.175e^-5	0.663	INTRON bru-2
3R	23058695	3R_23058695_SNP [dm3] 3R_27232973_SNP [dm6]	G	A	1.231e^-5	0.663	SYNONYMOUS_CODING CG31064 UPSTREAM CG31068	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18456054	2R_18456054_DEL [dm3] 2R_22568549_DEL [dm6]	CTC	C	1.245e^-5	0.663	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2652493	X_2652493_SNP [dm3] X_2758460_SNP [dm6]	A	G	1.292e^-5	0.663	INTRON kirre
2R	10720714	2R_10720714_SNP [dm3] 2R_14833209_SNP [dm6]	C	T	1.302e^-5	0.663	NON_SYNONYMOUS_CODING CG10205
2R	12783618	2R_12783618_SNP [dm3] 2R_16896113_SNP [dm6]	G	A	1.304e^-5	0.663	UPSTREAM mir-990 & 1 other INTERGENIC
3R	6442152	3R_6442152_SNP [dm3] 3R_10616430_SNP [dm6]	A	G	1.307e^-5	0.663	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12796016	2R_12796016_SNP [dm3] 2R_16908511_SNP [dm6]	T	C	1.360e^-5	0.67	INTERGENIC
3L	3907765	3L_3907765_SNP [dm3] 3L_3907765_SNP [dm6]	G	C	1.465e^-5	0.67	UTR_3_PRIME ida DOWNSTREAM mge
X	13239264	X_13239264_SNP [dm3] X_13345231_SNP [dm6]	G	T	1.499e^-5	0.67	DOWNSTREAM CR45709 EXON CR45708
3R	13273011	3R_13273011_SNP [dm3] 3R_17447289_SNP [dm6]	T	A	1.509e^-5	0.67	DOWNSTREAM CG5873 INTRON Eh
2L	2235456	2L_2235456_SNP [dm3] 2L_2235456_SNP [dm6]	G	A	1.513e^-5	0.67	SYNONYMOUS_CODING Sec24CD UPSTREAM CR44115	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15760756	3R_15760756_SNP [dm3] 3R_19935034_SNP [dm6]	A	C	1.584e^-5	0.67	UTR_5_PRIME mira UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16650954	3R_16650954_SNP [dm3] 3R_20825232_SNP [dm6]	T	C	1.630e^-5	0.67	NON_SYNONYMOUS_CODING AdSS UPSTREAM CG17272	TF binding site mE1_TFBS_cad
2R	17670343	2R_17670343_SNP [dm3] 2R_21782838_SNP [dm6]	G	T	1.700e^-5	0.67	INTERGENIC
3R	8086342	3R_8086342_SNP [dm3] 3R_12260620_SNP [dm6]	A	T	1.814e^-5	0.67	UPSTREAM CG44038 INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_sens
3L	4397290	3L_4397290_MNP [dm3] 3L_4397290_MNP [dm6]	CAA	AGT	1.818e^-5	0.67	INTRON slow
2L	11676745	2L_11676745_SNP [dm3] 2L_11676745_SNP [dm6]	G	A	1.831e^-5	0.67	INTERGENIC
3R	11603975	3R_11603975_SNP [dm3] 3R_15778253_SNP [dm6]	A	G	1.849e^-5	0.67	DOWNSTREAM CG4525 INTERGENIC
X	12901909	X_12901909_SNP [dm3] X_13007876_SNP [dm6]	A	G	1.887e^-5	0.67	INTRON rad
3L	15674152	3L_15674152_SNP [dm3] 3L_15681052_SNP [dm6]	C	T	1.887e^-5	0.67	NON_SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
3R	21022647	3R_21022647_SNP [dm3] 3R_25196925_SNP [dm6]	A	G	1.938e^-5	0.67	DOWNSTREAM CG13653 & 1 other INTERGENIC
3R	23836387	3R_23836387_SNP [dm3] 3R_28010665_SNP [dm6]	C	G	1.963e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	5385245	2R_5385245_SNP [dm3] 2R_9497740_SNP [dm6]	A	G	1.992e^-5	0.67	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
2L	2234395	2L_2234395_SNP [dm3] 2L_2234395_SNP [dm6]	C	G	2.100e^-5	0.67	INTRON Sec24CD
3L	3079755	3L_3079755_INS [dm3] 3L_3079755_INS [dm6]	G	GTTTGAAGTTGCTTTATTA...	2.108e^-5	0.67	INTRON CG11486
2R	17423482	2R_17423482_SNP [dm3] 2R_21535977_SNP [dm6]	A	G	2.119e^-5	0.67	NON_SYNONYMOUS_CODING CG30286 UTR_3_PRIME CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	12783665	2R_12783665_SNP [dm3] 2R_16896160_SNP [dm6]	A	T	2.182e^-5	0.67	UPSTREAM mir-990 & 1 other INTERGENIC
2R	10364219	2R_10364219_SNP [dm3] 2R_14476714_SNP [dm6]	A	T	2.189e^-5	0.67	EXON CR44462	TF binding site mE1_TFBS_sens
2R	16987373	2R_16987373_SNP [dm3] 2R_21099868_SNP [dm6]	T	A	2.239e^-5	0.67	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	12901821	X_12901821_SNP [dm3] X_13007788_SNP [dm6]	C	G	2.294e^-5	0.67	INTRON rad
3L	12037271	3L_12037271_SNP [dm3] 3L_12044171_SNP [dm6]	G	A	2.421e^-5	0.67	UTR_3_PRIME CG6793 UPSTREAM CG43638 INTRON rols
X	13671879	X_13671879_SNP [dm3] X_13777846_SNP [dm6]	C	A	2.455e^-5	0.67	UTR_3_PRIME rdgB
2L	16875998	2L_16875998_SNP [dm3] 2L_16875998_SNP [dm6]	C	T	2.460e^-5	0.67	INTRON CR31781
3R	19401648	3R_19401648_SNP [dm3] 3R_23575926_SNP [dm6]	C	A	2.472e^-5	0.67	INTRON beat-IV
3R	26837766	3R_26837766_SNP [dm3] 3R_31012044_SNP [dm6]	G	C	2.552e^-5	0.67	INTRON 5-HT7
3R	15092878	3R_15092878_DEL [dm3] 3R_19267156_DEL [dm6]	AA	A	2.634e^-5	0.67	INTERGENIC
3R	5750552	3R_5750552_SNP [dm3] 3R_9924830_SNP [dm6]	C	T	2.645e^-5	0.67	INTRON Glut4EF
3L	5230049	3L_5230049_SNP [dm3] 3L_5236949_SNP [dm6]	G	C	2.649e^-5	0.67	DOWNSTREAM CG4669 INTRON shep
3R	14460625	3R_14460625_SNP [dm3] 3R_18634903_SNP [dm6]	A	T	2.671e^-5	0.67	INTRON qin & 1 other
2L	888072	2L_888072_INS [dm3] 2L_888072_INS [dm6]	T	TTGGTTGGTGGCCACATCCT...	2.682e^-5	0.67	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9834346	2L_9834346_SNP [dm3] 2L_9834346_SNP [dm6]	T	G	2.715e^-5	0.67	INTRON nAChRalpha6
3R	5750949	3R_5750949_SNP [dm3] 3R_9925227_SNP [dm6]	G	T	2.751e^-5	0.67	INTRON Glut4EF
3R	18443777	3R_18443777_SNP [dm3] 3R_22618055_SNP [dm6]	A	G	2.785e^-5	0.67	UPSTREAM mRpL45 INTRON CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6450794	3R_6450794_SNP [dm3] 3R_10625072_SNP [dm6]	T	C	2.825e^-5	0.67	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12246476	2L_12246476_SNP [dm3] 2L_12246476_SNP [dm6]	A	G	2.828e^-5	0.67	INTRON aret
2R	16987384	2R_16987384_SNP [dm3] 2R_21099879_SNP [dm6]	T	A	2.844e^-5	0.67	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13074459	2R_13074459_SNP [dm3] 2R_17186954_SNP [dm6]	G	A	2.904e^-5	0.67	DOWNSTREAM CR44388 INTERGENIC
3L	3277294	3L_3277294_SNP [dm3] 3L_3277294_SNP [dm6]	A	T	2.931e^-5	0.67	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16915854	2L_16915854_SNP [dm3] 2L_16915854_SNP [dm6]	A	T	3.040e^-5	0.67	INTRON tweek
2L	9834268	2L_9834268_SNP [dm3] 2L_9834268_SNP [dm6]	G	C	3.090e^-5	0.67	INTRON nAChRalpha6
3R	6157510	3R_6157510_SNP [dm3] 3R_10331788_SNP [dm6]	G	T	3.154e^-5	0.67	NON_SYNONYMOUS_CODING CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	12901703	X_12901703_SNP [dm3] X_13007670_SNP [dm6]	G	A	3.171e^-5	0.67	INTRON rad
3R	26089456	3R_26089456_SNP [dm3] 3R_30263734_SNP [dm6]	G	A	3.191e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7235526	2L_7235526_SNP [dm3] 2L_7235526_SNP [dm6]	T	G	3.195e^-5	0.67	INTRON Ndae1
2R	13098941	2R_13098941_SNP [dm3] 2R_17211436_SNP [dm6]	A	C	3.201e^-5	0.67	INTERGENIC
2L	12246486	2L_12246486_SNP [dm3] 2L_12246486_SNP [dm6]	T	A	3.214e^-5	0.67	INTRON aret
2R	10203594	2R_10203594_SNP [dm3] 2R_14316089_SNP [dm6]	G	A	3.251e^-5	0.67	INTRON Shroom	TF binding site mE1_TFBS_cad
X	3645953	X_3645953_SNP [dm3] X_3751920_SNP [dm6]	T	C	3.265e^-5	0.67	INTRON tlk
2L	8286101	2L_8286101_SNP [dm3] 2L_8286101_SNP [dm6]	G	C	3.281e^-5	0.67	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16544207	X_16544207_DEL [dm3] X_16650174_DEL [dm6]	AA	A	3.284e^-5	0.67	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
3R	24022424	3R_24022424_SNP [dm3] 3R_28196702_SNP [dm6]	A	C	3.284e^-5	0.67	INTRON CG34354
2L	2234259	2L_2234259_SNP [dm3] 2L_2234259_SNP [dm6]	A	G	3.329e^-5	0.671	SYNONYMOUS_CODING Sec24CD
3R	15763568	3R_15763568_SNP [dm3] 3R_19937846_SNP [dm6]	G	A	3.373e^-5	0.672	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
2L	8286062	2L_8286062_SNP [dm3] 2L_8286062_SNP [dm6]	T	A	3.401e^-5	0.672	INTRON Btk29A	TF binding site BDTNP1_TFBS_da
2L	9452389	2L_9452389_SNP [dm3] 2L_9452389_SNP [dm6]	T	G	3.531e^-5	0.684	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	7742389	3R_7742389_SNP [dm3] 3R_11916667_SNP [dm6]	A	G	3.535e^-5	0.684	INTRON Cad87A
2R	10447368	2R_10447368_SNP [dm3] 2R_14559863_SNP [dm6]	C	T	3.657e^-5	0.7	INTRON ttv
3R	14453787	3R_14453787_SNP [dm3] 3R_18628065_SNP [dm6]	C	A	3.785e^-5	0.704	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
2R	16987524	2R_16987524_SNP [dm3] 2R_21100019_SNP [dm6]	C	T	3.805e^-5	0.704	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	6448304	3R_6448304_SNP [dm3] 3R_10622582_SNP [dm6]	A	T	3.831e^-5	0.704	INTRON hth	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5980872	3L_5980872_SNP [dm3] 3L_5987772_SNP [dm6]	T	A	3.854e^-5	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10544888	3L_10544888_SNP [dm3] 3L_10551788_SNP [dm6]	T	G	3.866e^-5	0.704	INTRON A2bp1
3L	14809888	3L_14809888_SNP [dm3] 3L_14816788_SNP [dm6]	T	A	3.950e^-5	0.708	INTRON CG17839
X	16552225	X_16552225_SNP [dm3] X_16658192_SNP [dm6]	C	T	4.012e^-5	0.708	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9998018	3R_9998018_SNP [dm3] 3R_14172296_SNP [dm6]	G	T	4.048e^-5	0.708	UTR_3_PRIME Dop1R1
2L	2706542	2L_2706542_SNP [dm3] 2L_2706542_SNP [dm6]	A	T	4.058e^-5	0.708	INTRON CG31690
2L	2234283	2L_2234283_SNP [dm3] 2L_2234283_SNP [dm6]	C	T	4.140e^-5	0.708	SYNONYMOUS_CODING Sec24CD
3L	12039171	3L_12039171_SNP [dm3] 3L_12046071_SNP [dm6]	C	G	4.181e^-5	0.708	DOWNSTREAM CG43638 INTRON rols
3L	1727817	3L_1727817_INS [dm3] 3L_1727817_INS [dm6]	T	TGCTGCAAT	4.214e^-5	0.708	INTRON drpr	TF binding site BDTNP1_TFBS_twi
2R	14508607	2R_14508607_SNP [dm3] 2R_18621102_SNP [dm6]	C	T	4.261e^-5	0.708	SYNONYMOUS_CODING Atg7 UPSTREAM CG5335
3R	10808602	3R_10808602_SNP [dm3] 3R_14982880_SNP [dm6]	C	T	4.279e^-5	0.708	INTERGENIC
2L	2234219	2L_2234219_SNP [dm3] 2L_2234219_SNP [dm6]	T	C	4.299e^-5	0.708	INTRON Sec24CD
2L	2234530	2L_2234530_SNP [dm3] 2L_2234530_SNP [dm6]	C	T	4.306e^-5	0.708	SYNONYMOUS_CODING Sec24CD
X	12071675	X_12071675_SNP [dm3] X_12177642_SNP [dm6]	A	G	4.397e^-5	0.708	SYNONYMOUS_CODING CG1924 INTRON Ten-a	TF binding site mE1_TFBS_HSA
3R	15040281	3R_15040281_SNP [dm3] 3R_19214559_SNP [dm6]	T	C	4.440e^-5	0.708	SYNONYMOUS_CODING cry DOWNSTREAM vib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2234443	2L_2234443_SNP [dm3] 2L_2234443_SNP [dm6]	T	A	4.476e^-5	0.708	SYNONYMOUS_CODING Sec24CD
2R	18409368	2R_18409368_SNP [dm3] 2R_22521863_SNP [dm6]	G	A	4.508e^-5	0.708	INTRON px	TF binding site mE1_TFBS_HSA
3R	21647592	3R_21647592_SNP [dm3] 3R_25821870_SNP [dm6]	C	T	4.534e^-5	0.708	INTERGENIC
3R	15095481	3R_15095481_SNP [dm3] 3R_19269759_SNP [dm6]	G	A	4.570e^-5	0.708	INTERGENIC
2L	16934679	2L_16934679_SNP [dm3] 2L_16934679_SNP [dm6]	G	T	4.646e^-5	0.708	INTERGENIC
2L	12246482	2L_12246482_DEL [dm3] 2L_12246482_DEL [dm6]	AC	A	4.648e^-5	0.708	INTRON aret
3L	14687645	3L_14687645_SNP [dm3] 3L_14694545_SNP [dm6]	A	G	4.652e^-5	0.708	INTRON ome
2L	13949400	2L_13949400_SNP [dm3] 2L_13949400_SNP [dm6]	G	A	4.678e^-5	0.708	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4652503	2L_4652503_SNP [dm3] 2L_4652503_SNP [dm6]	C	T	4.746e^-5	0.708	SYNONYMOUS_CODING CG3355 UTR_3_PRIME CG3355	TF binding site mE1_TFBS_chinmo
2L	16463350	2L_16463350_SNP [dm3] 2L_16463350_SNP [dm6]	G	A	4.757e^-5	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11223158	3R_11223158_SNP [dm3] 3R_15397436_SNP [dm6]	T	G	4.821e^-5	0.709	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16076273	2R_16076273_INS [dm3] 2R_20188768_INS [dm6]	A	ACATA	4.859e^-5	0.709	INTERGENIC
3L	8769414	3L_8769414_SNP [dm3] 3L_8776314_SNP [dm6]	C	A	4.943e^-5	0.709	INTRON Fhos
3R	14460276	3R_14460276_SNP [dm3] 3R_18634554_SNP [dm6]	C	A	5.098e^-5	0.709	INTRON qin & 1 other
2R	12785556	2R_12785556_SNP [dm3] 2R_16898051_SNP [dm6]	G	A	5.155e^-5	0.709	UPSTREAM inaC INTERGENIC
3R	5772604	3R_5772604_SNP [dm3] 3R_9946882_SNP [dm6]	A	G	5.189e^-5	0.709	INTRON Glut4EF
3R	526752	3R_526752_SNP [dm3] 3R_4701030_SNP [dm6]	A	T	5.214e^-5	0.709	INTRON CG43427	TF binding site mE1_TFBS_cad
X	16543809	X_16543809_SNP [dm3] X_16649776_SNP [dm6]	T	C	5.267e^-5	0.709	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
2L	16916894	2L_16916894_SNP [dm3] 2L_16916894_SNP [dm6]	T	C	5.285e^-5	0.709	UTR_3_PRIME tweek	TF binding site mE1_TFBS_inv
X	16552396	X_16552396_SNP [dm3] X_16658363_SNP [dm6]	G	T	5.405e^-5	0.709	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11046588	2R_11046588_SNP [dm3] 2R_15159083_SNP [dm6]	G	A	5.513e^-5	0.709	DOWNSTREAM CR43831 INTRON igl
2L	16874820	2L_16874820_SNP [dm3] 2L_16874820_SNP [dm6]	C	T	5.573e^-5	0.709	INTRON CR31781
2R	16987082	2R_16987082_SNP [dm3] 2R_21099577_SNP [dm6]	C	A	5.593e^-5	0.709	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17477307	2R_17477307_SNP [dm3] 2R_21589802_SNP [dm6]	G	A	5.620e^-5	0.709	UPSTREAM CG33225 INTERGENIC
2L	924095	2L_924095_SNP [dm3] 2L_924095_SNP [dm6]	T	A	5.674e^-5	0.709	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	505171	3R_505171_SNP [dm3] 3R_4679449_SNP [dm6]	A	T	5.685e^-5	0.709	INTRON CG43427	TF binding site mE1_TFBS_kn
2L	9439257	2L_9439257_SNP [dm3] 2L_9439257_SNP [dm6]	T	C	5.736e^-5	0.709	DOWNSTREAM CG33723 INTRON numb
X	22020967	X_22020967_DEL [dm3] X_22619131_DEL [dm6]	CCC	C	5.823e^-5	0.709	INTRON Cda4
3R	14460275	3R_14460275_SNP [dm3] 3R_18634553_SNP [dm6]	T	A	5.857e^-5	0.709	INTRON qin & 1 other
2R	17658448	2R_17658448_SNP [dm3] 2R_21770943_SNP [dm6]	G	C	5.862e^-5	0.709	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3079693	3L_3079693_SNP [dm3] 3L_3079693_SNP [dm6]	G	A	5.906e^-5	0.709	INTRON CG11486
3R	13309952	3R_13309952_DEL [dm3] 3R_17484230_DEL [dm6]	TGAATCCT	T	6.009e^-5	0.709	INTRON Dscam3
3R	13271607	3R_13271607_SNP [dm3] 3R_17445885_SNP [dm6]	A	T	6.019e^-5	0.709	DOWNSTREAM Eh INTRON CG5873
3L	9640395	3L_9640395_SNP [dm3] 3L_9647295_SNP [dm6]	T	C	6.066e^-5	0.709	INTRON fry & 1 other
3R	8710071	3R_8710071_INS [dm3] 3R_12884349_INS [dm6]	C	CA	6.107e^-5	0.709	INTERGENIC
2L	4472187	2L_4472187_SNP [dm3] 2L_4472187_SNP [dm6]	G	A	6.146e^-5	0.709	INTRON ine
X	3081054	X_3081054_SNP [dm3] X_3187021_SNP [dm6]	T	G	6.200e^-5	0.709	INTRON dnc
2R	4633675	2R_4633675_SNP [dm3] 2R_8746170_SNP [dm6]	C	T	6.205e^-5	0.709	INTRON CG8740
3L	1319951	3L_1319951_SNP [dm3] 3L_1319951_SNP [dm6]	G	A	6.221e^-5	0.709	INTRON Myo61F
X	9200426	X_9200426_SNP [dm3] X_9306393_SNP [dm6]	A	T	6.229e^-5	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14793392	3R_14793392_SNP [dm3] 3R_18967670_SNP [dm6]	A	C	6.232e^-5	0.709	INTRON CG42613 & 1 other
2R	5943393	2R_5943393_SNP [dm3] 2R_10055888_SNP [dm6]	A	G	6.305e^-5	0.709	UPSTREAM magu INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9834356	2L_9834356_SNP [dm3] 2L_9834356_SNP [dm6]	C	T	6.364e^-5	0.709	INTRON nAChRalpha6
3R	13707354	3R_13707354_SNP [dm3] 3R_17881632_SNP [dm6]	A	G	6.422e^-5	0.709	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6156976	3R_6156976_DEL [dm3] 3R_10331254_DEL [dm6]	TT	T	6.509e^-5	0.709	UTR_5_PRIME Bruce UPSTREAM CG12818	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	5999680	3R_5999680_SNP [dm3] 3R_10173958_SNP [dm6]	T	A	6.608e^-5	0.709	INTRON CG12814
3R	19604379	3R_19604379_SNP [dm3] 3R_23778657_SNP [dm6]	T	C	6.610e^-5	0.709	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_sens
2L	13057271	2L_13057271_SNP [dm3] 2L_13057271_SNP [dm6]	G	A	6.617e^-5	0.709	INTRON CG9932
2L	11238007	2L_11238007_SNP [dm3] 2L_11238007_SNP [dm6]	A	T	6.630e^-5	0.709	INTRON ab
3R	10153234	3R_10153234_SNP [dm3] 3R_14327512_SNP [dm6]	T	G	6.653e^-5	0.709	SYNONYMOUS_CODING CG3321 UPSTREAM Afti & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	12783807	2R_12783807_SNP [dm3] 2R_16896302_SNP [dm6]	G	C	6.672e^-5	0.709	UPSTREAM mir-990 & 1 other INTERGENIC
2L	16916909	2L_16916909_SNP [dm3] 2L_16916909_SNP [dm6]	G	A	6.726e^-5	0.709	UTR_3_PRIME tweek	TF binding site mE1_TFBS_inv
3R	21647464	3R_21647464_SNP [dm3] 3R_25821742_SNP [dm6]	T	C	6.737e^-5	0.709	INTERGENIC
3R	13272752	3R_13272752_SNP [dm3] 3R_17447030_SNP [dm6]	G	A	6.798e^-5	0.709	SYNONYMOUS_CODING Eh DOWNSTREAM CG5873
2L	8286067	2L_8286067_SNP [dm3] 2L_8286067_SNP [dm6]	T	A	6.819e^-5	0.709	INTRON Btk29A	TF binding site BDTNP1_TFBS_da
X	4669336	X_4669336_SNP [dm3] X_4775303_SNP [dm6]	C	A	6.845e^-5	0.709	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26502270	3R_26502270_SNP [dm3] 3R_30676548_SNP [dm6]	G	A	6.860e^-5	0.709	INTERGENIC
3R	15763551	3R_15763551_SNP [dm3] 3R_19937829_SNP [dm6]	A	G	6.876e^-5	0.709	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
3R	23842275	3R_23842275_SNP [dm3] 3R_28016553_SNP [dm6]	G	A	6.915e^-5	0.709	INTERGENIC
2L	7844354	2L_7844354_SNP [dm3] 2L_7844354_SNP [dm6]	T	A	6.950e^-5	0.709	DOWNSTREAM CG14535 INTERGENIC
3R	26860629	3R_26860629_SNP [dm3] 3R_31034907_SNP [dm6]	G	A	6.977e^-5	0.709	UPSTREAM CG33773 INTERGENIC
3L	12104911	3L_12104911_SNP [dm3] 3L_12111811_SNP [dm6]	T	A	6.991e^-5	0.709	INTERGENIC
3R	708538	3R_708538_SNP [dm3] 3R_4882816_SNP [dm6]	A	G	7.025e^-5	0.709	INTERGENIC
2L	12151195	2L_12151195_SNP [dm3] 2L_12151195_SNP [dm6]	T	C	7.090e^-5	0.709	INTRON CG31760
3L	14491899	3L_14491899_SNP [dm3] 3L_14498799_SNP [dm6]	T	A	7.114e^-5	0.709	INTRON bbg	TF binding site mE1_TFBS_inv
2L	11238010	2L_11238010_INS [dm3] 2L_11238010_INS [dm6]	A	ATATATAACT	7.178e^-5	0.709	INTRON ab
3R	10071082	3R_10071082_SNP [dm3] 3R_14245360_SNP [dm6]	G	C	7.198e^-5	0.709	NON_SYNONYMOUS_CODING CG9616 UPSTREAM CG43291
3R	10071084	3R_10071084_SNP [dm3] 3R_14245362_SNP [dm6]	A	C	7.198e^-5	0.709	STOP_GAINED CG9616 UPSTREAM CG43291
2R	17671008	2R_17671008_SNP [dm3] 2R_21783503_SNP [dm6]	A	T	7.223e^-5	0.709	INTERGENIC
3R	6157508	3R_6157508_SNP [dm3] 3R_10331786_SNP [dm6]	T	C	7.269e^-5	0.709	SYNONYMOUS_CODING CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	10058984	3R_10058984_SNP [dm3] 3R_14233262_SNP [dm6]	C	G	7.271e^-5	0.709	INTERGENIC
2L	11238081	2L_11238081_SNP [dm3] 2L_11238081_SNP [dm6]	T	A	7.446e^-5	0.709	INTRON ab
2R	20234669	2R_20234669_SNP [dm3] 2R_24347146_SNP [dm6]	G	C	7.548e^-5	0.709	INTRON bs	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16987266	2R_16987266_SNP [dm3] 2R_21099761_SNP [dm6]	A	C	7.554e^-5	0.709	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14817181	3L_14817181_SNP [dm3] 3L_14824081_SNP [dm6]	A	T	7.636e^-5	0.709	INTRON CG17839
2L	4459966	2L_4459966_SNP [dm3] 2L_4459966_SNP [dm6]	T	A	7.654e^-5	0.709	UTR_5_PRIME CG15435 UPSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	13948419	3R_13948419_SNP [dm3] 3R_18122697_SNP [dm6]	T	G	7.662e^-5	0.709	INTRON sr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	2235559	2L_2235559_SNP [dm3] 2L_2235559_SNP [dm6]	G	C	7.767e^-5	0.709	NON_SYNONYMOUS_CODING Sec24CD UPSTREAM CR44115	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26041154	3R_26041154_SNP [dm3] 3R_30215432_SNP [dm6]	G	C	7.778e^-5	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7470573	3R_7470573_SNP [dm3] 3R_11644851_SNP [dm6]	C	T	7.795e^-5	0.709	INTRON Csk
2L	13056014	2L_13056014_SNP [dm3] 2L_13056014_SNP [dm6]	A	G	7.809e^-5	0.709	INTRON CG9932
X	16543776	X_16543776_INS [dm3] X_16649743_INS [dm6]	A	ACACCCATA	7.840e^-5	0.709	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
3R	6405399	3R_6405399_SNP [dm3] 3R_10579677_SNP [dm6]	C	T	7.858e^-5	0.709	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4043573	3L_4043573_SNP [dm3] 3L_4043573_SNP [dm6]	C	A	7.931e^-5	0.709	DOWNSTREAM Rcd5 INTERGENIC
3R	5750518	3R_5750518_SNP [dm3] 3R_9924796_SNP [dm6]	C	G	7.941e^-5	0.709	INTRON Glut4EF
2R	13098962	2R_13098962_SNP [dm3] 2R_17211457_SNP [dm6]	T	A	8.036e^-5	0.709	INTERGENIC
3R	21629395	3R_21629395_SNP [dm3] 3R_25803673_SNP [dm6]	G	A	8.106e^-5	0.709	INTERGENIC
X	20972768	X_20972768_SNP [dm3] X_21101741_SNP [dm6]	A	G	8.118e^-5	0.709	SYNONYMOUS_CODING CG15446 INTRON stg1 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	13121556	2L_13121556_SNP [dm3] 2L_13121556_SNP [dm6]	G	T	8.138e^-5	0.709	DOWNSTREAM CG43050 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11195823	3L_11195823_SNP [dm3] 3L_11202723_SNP [dm6]	G	A	8.259e^-5	0.709	SYNONYMOUS_CODING Plod DOWNSTREAM CG14141
2L	9834350	2L_9834350_SNP [dm3] 2L_9834350_SNP [dm6]	A	T	8.297e^-5	0.709	INTRON nAChRalpha6
3L	2470333	3L_2470333_SNP [dm3] 3L_2470333_SNP [dm6]	G	C	8.380e^-5	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	13073509	2R_13073509_SNP [dm3] 2R_17186004_SNP [dm6]	A	G	8.390e^-5	0.709	DOWNSTREAM CR44387 INTERGENIC
3L	7094615	3L_7094615_SNP [dm3] 3L_7101515_SNP [dm6]	C	T	8.392e^-5	0.709	INTRON form3
3L	14665794	3L_14665794_INS [dm3] 3L_14672694_INS [dm6]	G	GACCG	8.441e^-5	0.709	UPSTREAM ome & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9439218	2L_9439218_SNP [dm3] 2L_9439218_SNP [dm6]	T	C	8.571e^-5	0.709	DOWNSTREAM CG33723 INTRON numb
X	6151360	X_6151360_SNP [dm3] X_6257327_SNP [dm6]	G	T	8.597e^-5	0.709	UTR_3_PRIME Spx DOWNSTREAM schlank
2R	15429622	2R_15429622_SNP [dm3] 2R_19542117_SNP [dm6]	C	T	8.770e^-5	0.709	INTRON sm
X	16543732	X_16543732_INS [dm3] X_16649699_INS [dm6]	A	ATCCCTGTAA	8.781e^-5	0.709	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
2R	17607616	2R_17607616_DEL [dm3] 2R_21720111_DEL [dm6]	TG	T	8.815e^-5	0.709	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	14966104	2R_14966104_SNP [dm3] 2R_19078599_SNP [dm6]	A	G	8.824e^-5	0.709	INTRON 5-HT1A
2R	13098908	2R_13098908_SNP [dm3] 2R_17211403_SNP [dm6]	A	T	8.886e^-5	0.709	INTERGENIC
3R	15568438	3R_15568438_SNP [dm3] 3R_19742716_SNP [dm6]	C	T	8.917e^-5	0.709	INTRON GluClalpha
X	12951204	X_12951204_SNP [dm3] X_13057171_SNP [dm6]	T	C	8.928e^-5	0.709	INTRON rad
2L	6310982	2L_6310982_SNP [dm3] 2L_6310982_SNP [dm6]	T	C	8.967e^-5	0.709	INTRON Ddr
X	12407093	X_12407093_SNP [dm3] X_12513060_SNP [dm6]	G	A	9.021e^-5	0.709	INTRON CG2556
3R	19401637	3R_19401637_SNP [dm3] 3R_23575915_SNP [dm6]	T	G	9.041e^-5	0.709	INTRON beat-IV
3R	26860633	3R_26860633_SNP [dm3] 3R_31034911_SNP [dm6]	C	T	9.051e^-5	0.709	UPSTREAM CG33773 INTERGENIC
3R	6401411	3R_6401411_SNP [dm3] 3R_10575689_SNP [dm6]	T	C	9.083e^-5	0.709	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23055011	3R_23055011_SNP [dm3] 3R_27229289_SNP [dm6]	G	A	9.167e^-5	0.709	SYNONYMOUS_CODING CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad
2L	13074649	2L_13074649_SNP [dm3] 2L_13074649_SNP [dm6]	T	C	9.234e^-5	0.709	INTERGENIC
2L	10875143	2L_10875143_DEL [dm3] 2L_10875143_DEL [dm6]	CTGAACCACAC...	C	9.255e^-5	0.709	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3535754	3L_3535754_SNP [dm3] 3L_3535754_SNP [dm6]	T	G	9.287e^-5	0.709	INTRON Eip63E
3L	15728032	3L_15728032_SNP [dm3] 3L_15734932_SNP [dm6]	C	A	9.468e^-5	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15674048	3L_15674048_SNP [dm3] 3L_15680948_SNP [dm6]	C	A	9.470e^-5	0.709	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2L	2234464	2L_2234464_SNP [dm3] 2L_2234464_SNP [dm6]	C	T	9.516e^-5	0.709	SYNONYMOUS_CODING Sec24CD
2L	16463263	2L_16463263_SNP [dm3] 2L_16463263_SNP [dm6]	A	C	9.516e^-5	0.709	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6427285	3R_6427285_SNP [dm3] 3R_10601563_SNP [dm6]	C	A	9.549e^-5	0.709	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21629620	3R_21629620_SNP [dm3] 3R_25803898_SNP [dm6]	A	T	9.593e^-5	0.709	INTERGENIC
3L	4314261	3L_4314261_SNP [dm3] 3L_4314261_SNP [dm6]	C	T	9.638e^-5	0.709	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
X	12951205	X_12951205_SNP [dm3] X_13057172_SNP [dm6]	A	C	9.745e^-5	0.709	INTRON rad
3L	3079642	3L_3079642_SNP [dm3] 3L_3079642_SNP [dm6]	G	A	9.748e^-5	0.709	INTRON CG11486
3L	2283468	3L_2283468_SNP [dm3] 3L_2283468_SNP [dm6]	T	A	9.760e^-5	0.709	INTRON MsR2
3R	21647677	3R_21647677_SNP [dm3] 3R_25821955_SNP [dm6]	A	C	9.767e^-5	0.709	INTERGENIC
3R	19604463	3R_19604463_SNP [dm3] 3R_23778741_SNP [dm6]	G	T	9.815e^-5	0.709	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3528809	2L_3528809_SNP [dm3] 2L_3528809_SNP [dm6]	G	A	9.823e^-5	0.709	SPLICE_SITE_REGION Spindly INTRON Spindly
2L	12490713	2L_12490713_SNP [dm3] 2L_12490713_SNP [dm6]	A	T	9.839e^-5	0.709	INTRON bun
3L	5069579	3L_5069579_SNP [dm3] 3L_5069579_SNP [dm6]	G	C	9.854e^-5	0.709	INTRON Con
3L	2470887	3L_2470887_SNP [dm3] 3L_2470887_SNP [dm6]	C	G	9.890e^-5	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	6426789	3R_6426789_SNP [dm3] 3R_10601067_SNP [dm6]	T	C	9.923e^-5	0.709	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13271579	3R_13271579_SNP [dm3] 3R_17445857_SNP [dm6]	C	A	9.975e^-5	0.709	DOWNSTREAM Eh INTRON CG5873
X	8671430	X_8671430_SNP [dm3] X_8777397_SNP [dm6]	T	C	1.001e^-4	0.709	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	16463332	2L_16463332_SNP [dm3] 2L_16463332_SNP [dm6]	A	G	1.006e^-4	0.709	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21300307	3R_21300307_SNP [dm3] 3R_25474585_SNP [dm6]	C	T	1.013e^-4	0.709	SYNONYMOUS_CODING Vps33B
3R	570979	3R_570979_SNP [dm3] 3R_4745257_SNP [dm6]	T	A	1.030e^-4	0.709	INTRON tacc
X	17770547	X_17770547_SNP [dm3] X_17876514_SNP [dm6]	A	G	1.030e^-4	0.709	INTRON mnb	TF binding site BDTNP1_TFBS_twi
2R	18986616	2R_18986616_SNP [dm3] 2R_23099093_SNP [dm6]	T	C	1.039e^-4	0.709	DOWNSTREAM RpL37b INTERGENIC
3R	3483209	3R_3483209_SNP [dm3] 3R_7657487_SNP [dm6]	T	A	1.045e^-4	0.709	UPSTREAM Nlg1 INTERGENIC
3R	25848312	3R_25848312_SNP [dm3] 3R_30022590_SNP [dm6]	C	T	1.046e^-4	0.709	SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6159951	3R_6159951_SNP [dm3] 3R_10334229_SNP [dm6]	G	C	1.050e^-4	0.709	NON_SYNONYMOUS_CODING sle	TF binding site mE1_TFBS_sens
3R	19604493	3R_19604493_SNP [dm3] 3R_23778771_SNP [dm6]	G	A	1.050e^-4	0.709	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13062312	2L_13062312_SNP [dm3] 2L_13062312_SNP [dm6]	G	C	1.054e^-4	0.709	INTERGENIC
3L	3363357	3L_3363357_SNP [dm3] 3L_3363357_SNP [dm6]	G	A	1.054e^-4	0.709	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	10544874	3L_10544874_SNP [dm3] 3L_10551774_SNP [dm6]	T	A	1.057e^-4	0.709	INTRON A2bp1
2L	2492156	2L_2492156_SNP [dm3] 2L_2492156_SNP [dm6]	T	A	1.061e^-4	0.709	SYNONYMOUS_CODING Slh UPSTREAM oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21300700	3R_21300700_SNP [dm3] 3R_25474978_SNP [dm6]	G	A	1.077e^-4	0.709	SYNONYMOUS_CODING Vps33B DOWNSTREAM CG4553	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19160057	3L_19160057_SNP [dm3] 3L_19166957_SNP [dm6]	A	G	1.078e^-4	0.709	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9966146	2R_9966146_SNP [dm3] 2R_14078641_SNP [dm6]	G	C	1.080e^-4	0.709	INTRON Prosap
3R	5856332	3R_5856332_SNP [dm3] 3R_10030610_SNP [dm6]	G	A	1.085e^-4	0.709	INTRON Mical
3L	16885830	3L_16885830_SNP [dm3] 3L_16892730_SNP [dm6]	T	C	1.087e^-4	0.709	INTRON Lmpt
2L	12163772	2L_12163772_SNP [dm3] 2L_12163772_SNP [dm6]	C	T	1.088e^-4	0.709	UPSTREAM ZnT33D INTRON CG31760
2R	16986967	2R_16986967_SNP [dm3] 2R_21099462_SNP [dm6]	C	G	1.093e^-4	0.709	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10544867	3L_10544867_SNP [dm3] 3L_10551767_SNP [dm6]	T	A	1.094e^-4	0.709	INTRON A2bp1
2L	2492506	2L_2492506_SNP [dm3] 2L_2492506_SNP [dm6]	C	T	1.107e^-4	0.709	SYNONYMOUS_CODING Slh UPSTREAM oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21300478	3R_21300478_SNP [dm3] 3R_25474756_SNP [dm6]	T	C	1.111e^-4	0.709	SYNONYMOUS_CODING Vps33B DOWNSTREAM CG4553	TF binding site mE1_TFBS_sens
3L	4314066	3L_4314066_SNP [dm3] 3L_4314066_SNP [dm6]	C	G	1.113e^-4	0.709	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9084782	2R_9084782_SNP [dm3] 2R_13197277_SNP [dm6]	A	T	1.114e^-4	0.709	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3692291	3L_3692291_SNP [dm3] 3L_3692291_SNP [dm6]	T	C	1.115e^-4	0.709	INTERGENIC
3R	6157572	3R_6157572_SNP [dm3] 3R_10331850_SNP [dm6]	A	T	1.115e^-4	0.709	UPSTREAM Bruce INTRON CG12818	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	12783994	2R_12783994_SNP [dm3] 2R_16896489_SNP [dm6]	T	A	1.117e^-4	0.709	UPSTREAM CG8910 INTERGENIC
3R	13271584	3R_13271584_SNP [dm3] 3R_17445862_SNP [dm6]	T	C	1.123e^-4	0.709	DOWNSTREAM Eh INTRON CG5873
3R	15576871	3R_15576871_SNP [dm3] 3R_19751149_SNP [dm6]	C	G	1.124e^-4	0.709	INTRON GluClalpha
3R	10059745	3R_10059745_SNP [dm3] 3R_14234023_SNP [dm6]	A	T	1.134e^-4	0.709	INTERGENIC
3R	25667014	3R_25667014_SNP [dm3] 3R_29841292_SNP [dm6]	A	G	1.134e^-4	0.709	UPSTREAM Cad99C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2L	2474557	2L_2474557_SNP [dm3] 2L_2474557_SNP [dm6]	C	G	1.137e^-4	0.709	INTERGENIC	regulatory region REDfly_CRMs
2R	15061110	2R_15061110_SNP [dm3] 2R_19173605_SNP [dm6]	G	A	1.143e^-4	0.709	SYNONYMOUS_CODING CG10737
2L	1133375	2L_1133375_SNP [dm3] 2L_1133375_SNP [dm6]	A	G	1.163e^-4	0.709	SYNONYMOUS_CODING Iris DOWNSTREAM CG4552	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8391923	2L_8391923_SNP [dm3] 2L_8391923_SNP [dm6]	A	G	1.173e^-4	0.709	SYNONYMOUS_CODING CG42820 DOWNSTREAM Acp29AB
3L	6958599	3L_6958599_SNP [dm3] 3L_6965499_SNP [dm6]	G	T	1.176e^-4	0.709	SYNONYMOUS_CODING CG10064 UPSTREAM sgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13900697	2R_13900697_SNP [dm3] 2R_18013192_SNP [dm6]	C	T	1.177e^-4	0.709	INTERGENIC
3R	13948231	3R_13948231_SNP [dm3] 3R_18122509_SNP [dm6]	A	G	1.189e^-4	0.709	UTR_5_PRIME sr INTRON sr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10808597	3R_10808597_SNP [dm3] 3R_14982875_SNP [dm6]	G	T	1.194e^-4	0.709	INTERGENIC
2R	16688825	2R_16688825_SNP [dm3] 2R_20801320_SNP [dm6]	G	A	1.195e^-4	0.709	INTERGENIC
X	13422443	X_13422443_SNP [dm3] X_13528410_SNP [dm6]	C	A	1.198e^-4	0.709	NON_SYNONYMOUS_CODING CG15754 DOWNSTREAM CR44427
2L	13055865	2L_13055865_SNP [dm3] 2L_13055865_SNP [dm6]	A	C	1.199e^-4	0.709	INTRON CG9932
3R	16652379	3R_16652379_SNP [dm3] 3R_20826657_SNP [dm6]	C	G	1.199e^-4	0.709	UPSTREAM CR44047 INTRON AdSS
3L	14601745	3L_14601745_SNP [dm3] 3L_14608645_SNP [dm6]	T	A	1.202e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18553628	3R_18553628_INS [dm3] 3R_22727906_INS [dm6]	G	GTATCTTG	1.202e^-4	0.709	INTRON CG45049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3871959	2L_3871959_DEL [dm3] 2L_3871959_DEL [dm6]	GTTCAGACGGACG...	G	1.203e^-4	0.709	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3080073	3L_3080073_SNP [dm3] 3L_3080073_SNP [dm6]	T	G	1.208e^-4	0.709	INTRON CG11486	TF binding site mE1_TFBS_bab1
X	19445522	X_19445522_SNP [dm3] X_19551489_SNP [dm6]	C	T	1.219e^-4	0.709	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
3L	3591736	3L_3591736_SNP [dm3] 3L_3591736_SNP [dm6]	C	T	1.226e^-4	0.709	INTRON Eip63E
3R	9175718	3R_9175718_SNP [dm3] 3R_13349996_SNP [dm6]	A	G	1.232e^-4	0.709	INTERGENIC
X	15441448	X_15441448_INS [dm3] X_15547415_INS [dm6]	C	CC	1.234e^-4	0.709	UPSTREAM CR44354 INTRON Ac13E EXON CR44353
2L	2134259	2L_2134259_SNP [dm3] 2L_2134259_SNP [dm6]	T	C	1.236e^-4	0.709	INTRON GlyP
3L	5344329	3L_5344329_SNP [dm3] 3L_5351229_SNP [dm6]	G	C	1.238e^-4	0.709	INTRON lama
3R	15563763	3R_15563763_SNP [dm3] 3R_19738041_SNP [dm6]	C	T	1.238e^-4	0.709	INTRON GluClalpha
3L	13976092	3L_13976092_SNP [dm3] 3L_13982992_SNP [dm6]	A	G	1.243e^-4	0.709	INTRON CG17364
3L	9865355	3L_9865355_SNP [dm3] 3L_9872255_SNP [dm6]	G	C	1.247e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	14665811	3L_14665811_SNP [dm3] 3L_14672711_SNP [dm6]	G	A	1.254e^-4	0.709	UPSTREAM ome & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5769021	3L_5769021_SNP [dm3] 3L_5775921_SNP [dm6]	C	T	1.256e^-4	0.709	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
2L	14169370	2L_14169370_SNP [dm3] 2L_14169370_SNP [dm6]	T	C	1.258e^-4	0.709	INTRON CG43333
3R	13707372	3R_13707372_SNP [dm3] 3R_17881650_SNP [dm6]	A	G	1.264e^-4	0.709	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10823257	3R_10823257_SNP [dm3] 3R_14997535_SNP [dm6]	T	G	1.269e^-4	0.709	INTERGENIC
3R	10184304	3R_10184304_SNP [dm3] 3R_14358582_SNP [dm6]	T	C	1.275e^-4	0.709	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20403484	X_20403484_SNP [dm3] X_20532457_SNP [dm6]	G	C	1.281e^-4	0.709	INTERGENIC
2L	10066341	2L_10066341_SNP [dm3] 2L_10066341_SNP [dm6]	C	G	1.285e^-4	0.709	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
3R	23055142	3R_23055142_SNP [dm3] 3R_27229420_SNP [dm6]	G	C	1.290e^-4	0.709	NON_SYNONYMOUS_CODING CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064
3R	13272779	3R_13272779_DEL [dm3] 3R_17447057_DEL [dm6]	TT	T	1.294e^-4	0.709	DOWNSTREAM CG5873 INTRON Eh
2L	7581625	2L_7581625_SNP [dm3] 2L_7581625_SNP [dm6]	G	A	1.299e^-4	0.709	UPSTREAM Spn28B INTERGENIC
3R	6427206	3R_6427206_SNP [dm3] 3R_10601484_SNP [dm6]	G	A	1.299e^-4	0.709	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6159895	3R_6159895_SNP [dm3] 3R_10334173_SNP [dm6]	G	C	1.301e^-4	0.709	NON_SYNONYMOUS_CODING sle	TF binding site mE1_TFBS_sens
3R	25060884	3R_25060884_SNP [dm3] 3R_29235162_SNP [dm6]	T	A	1.305e^-4	0.709	UTR_3_PRIME CG15817 DOWNSTREAM CG11951
3R	24732006	3R_24732006_SNP [dm3] 3R_28906284_SNP [dm6]	G	C	1.306e^-4	0.709	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16580248	2R_16580248_SNP [dm3] 2R_20692743_SNP [dm6]	T	C	1.308e^-4	0.709	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2R	16580251	2R_16580251_SNP [dm3] 2R_20692746_SNP [dm6]	G	C	1.308e^-4	0.709	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3L	6488626	3L_6488626_SNP [dm3] 3L_6495526_SNP [dm6]	A	T	1.314e^-4	0.709	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	5730655	X_5730655_SNP [dm3] X_5836622_SNP [dm6]	A	T	1.317e^-4	0.709	INTRON CG15765
3R	15763572	3R_15763572_SNP [dm3] 3R_19937850_SNP [dm6]	A	C	1.317e^-4	0.709	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
2L	2234551	2L_2234551_SNP [dm3] 2L_2234551_SNP [dm6]	C	T	1.318e^-4	0.709	SYNONYMOUS_CODING Sec24CD
X	9444103	X_9444103_SNP [dm3] X_9550070_SNP [dm6]	C	A	1.320e^-4	0.709	INTRON CG32700
2L	6058413	2L_6058413_SNP [dm3] 2L_6058413_SNP [dm6]	T	C	1.322e^-4	0.709	INTRON CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12151206	2L_12151206_SNP [dm3] 2L_12151206_SNP [dm6]	C	A	1.331e^-4	0.709	INTRON CG31760
2R	1395729	2R_1395729_SNP [dm3] 2R_5508224_SNP [dm6]	A	T	1.332e^-4	0.709	UPSTREAM TpnC4 INTRON CG30438
3L	3080079	3L_3080079_SNP [dm3] 3L_3080079_SNP [dm6]	A	G	1.334e^-4	0.709	INTRON CG11486	TF binding site mE1_TFBS_bab1
2R	7534607	2R_7534607_SNP [dm3] 2R_11647102_SNP [dm6]	G	T	1.334e^-4	0.709	UPSTREAM CG9003 INTRON CG9003	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3527997	2L_3527997_SNP [dm3] 2L_3527997_SNP [dm6]	G	T	1.339e^-4	0.709	SYNONYMOUS_CODING Spindly DOWNSTREAM CG8852
3R	10165445	3R_10165445_SNP [dm3] 3R_14339723_SNP [dm6]	T	C	1.346e^-4	0.709	INTRON NK7.1
2L	13061567	2L_13061567_SNP [dm3] 2L_13061567_SNP [dm6]	C	T	1.353e^-4	0.709	INTERGENIC
2R	6956079	2R_6956079_SNP [dm3] 2R_11068574_SNP [dm6]	T	A	1.354e^-4	0.709	INTRON luna
3L	16663796	3L_16663796_SNP [dm3] 3L_16670696_SNP [dm6]	G	C	1.357e^-4	0.709	DOWNSTREAM zetaCOP EXON CR45241	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10560544	2R_10560544_SNP [dm3] 2R_14673039_SNP [dm6]	G	T	1.357e^-4	0.709	NON_SYNONYMOUS_CODING mspo
3R	13964025	3R_13964025_SNP [dm3] 3R_18138303_SNP [dm6]	G	T	1.357e^-4	0.709	INTERGENIC
3R	26091327	3R_26091327_DEL [dm3] 3R_30265605_DEL [dm6]	TTAATA	C	1.359e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2707228	2L_2707228_SNP [dm3] 2L_2707228_SNP [dm6]	T	G	1.361e^-4	0.709	INTRON CG31690
3R	15768321	3R_15768321_SNP [dm3] 3R_19942599_SNP [dm6]	A	G	1.368e^-4	0.709	INTRON Hs6st
2R	12796185	2R_12796185_SNP [dm3] 2R_16908680_SNP [dm6]	C	G	1.370e^-4	0.709	INTERGENIC
2L	14229214	2L_14229214_SNP [dm3] 2L_14229214_SNP [dm6]	G	A	1.377e^-4	0.709	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
3L	16754647	3L_16754647_SNP [dm3] 3L_16761547_SNP [dm6]	T	A	1.380e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	18414517	3L_18414517_SNP [dm3] 3L_18421417_SNP [dm6]	G	A	1.389e^-4	0.709	INTERGENIC
X	13011867	X_13011867_SNP [dm3] X_13117834_SNP [dm6]	T	A	1.392e^-4	0.709	INTRON CG42237
3R	16354913	3R_16354913_SNP [dm3] 3R_20529191_SNP [dm6]	C	G	1.399e^-4	0.709	INTERGENIC
2L	1076538	2L_1076538_SNP [dm3] 2L_1076538_SNP [dm6]	T	A	1.410e^-4	0.709	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13073813	2R_13073813_SNP [dm3] 2R_17186308_SNP [dm6]	G	C	1.421e^-4	0.709	DOWNSTREAM CR44387 INTERGENIC
3L	5344386	3L_5344386_SNP [dm3] 3L_5351286_SNP [dm6]	A	T	1.425e^-4	0.709	INTRON lama
3R	13949356	3R_13949356_SNP [dm3] 3R_18123634_SNP [dm6]	A	C	1.437e^-4	0.709	INTRON sr
2L	3682870	2L_3682870_SNP [dm3] 2L_3682870_SNP [dm6]	T	G	1.438e^-4	0.709	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14460584	3R_14460584_SNP [dm3] 3R_18634862_SNP [dm6]	C	T	1.440e^-4	0.709	INTRON qin & 1 other
3L	10544839	3L_10544839_SNP [dm3] 3L_10551739_SNP [dm6]	T	G	1.447e^-4	0.709	INTRON A2bp1
2R	9197660	2R_9197660_SNP [dm3] 2R_13310155_SNP [dm6]	C	A	1.451e^-4	0.709	INTERGENIC
2R	12786535	2R_12786535_DEL [dm3] 2R_16899030_DEL [dm6]	TT	T	1.453e^-4	0.709	INTRON inaC	TF binding site mE1_TFBS_sbb
3R	8720301	3R_8720301_SNP [dm3] 3R_12894579_SNP [dm6]	C	T	1.470e^-4	0.709	UPSTREAM CR33929 INTERGENIC
2L	16875968	2L_16875968_INS [dm3] 2L_16875968_INS [dm6]	T	TGACTGTAT	1.475e^-4	0.709	INTRON CR31781
3L	15520004	3L_15520004_SNP [dm3] 3L_15526904_SNP [dm6]	T	A	1.475e^-4	0.709	UPSTREAM CG33985 DOWNSTREAM CG42729 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	17034560	3R_17034560_SNP [dm3] 3R_21208838_SNP [dm6]	T	C	1.479e^-4	0.709	INTRON SNF4Agamma
2L	3531185	2L_3531185_SNP [dm3] 2L_3531185_SNP [dm6]	T	A	1.481e^-4	0.709	NON_SYNONYMOUS_CODING Che-13 UPSTREAM Spindly
2L	13056267	2L_13056267_SNP [dm3] 2L_13056267_SNP [dm6]	A	T	1.482e^-4	0.709	INTRON CG9932
3R	21637238	3R_21637238_SNP [dm3] 3R_25811516_SNP [dm6]	C	G	1.482e^-4	0.709	SYNONYMOUS_CODING CG5024 UPSTREAM CG17770 & 1 other
2L	14104692	2L_14104692_SNP [dm3] 2L_14104692_SNP [dm6]	C	T	1.483e^-4	0.709	SYNONYMOUS_CODING CG16879	TF binding site mE1_TFBS_cad
3R	21698567	3R_21698567_SNP [dm3] 3R_25872845_SNP [dm6]	C	A	1.485e^-4	0.709	DOWNSTREAM Tsp96F & 1 other INTERGENIC
2L	5563635	2L_5563635_SNP [dm3] 2L_5563635_SNP [dm6]	A	G	1.487e^-4	0.709	DOWNSTREAM GluRIIB INTERGENIC
X	13410313	X_13410313_SNP [dm3] X_13516280_SNP [dm6]	C	T	1.487e^-4	0.709	INTRON Neto
3L	12037196	3L_12037196_SNP [dm3] 3L_12044096_SNP [dm6]	T	G	1.497e^-4	0.709	NON_SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
3R	13271613	3R_13271613_SNP [dm3] 3R_17445891_SNP [dm6]	A	T	1.500e^-4	0.709	DOWNSTREAM Eh INTRON CG5873
2R	14923297	2R_14923297_SNP [dm3] 2R_19035792_SNP [dm6]	C	T	1.503e^-4	0.709	SYNONYMOUS_CODING CG15115
2L	6829813	2L_6829813_SNP [dm3] 2L_6829813_SNP [dm6]	A	G	1.514e^-4	0.709	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10538253	2R_10538253_SNP [dm3] 2R_14650748_SNP [dm6]	T	C	1.518e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13905769	X_13905769_SNP [dm3] X_14011736_SNP [dm6]	C	A	1.518e^-4	0.709	INTERGENIC
3L	1376259	3L_1376259_SNP [dm3] 3L_1376259_SNP [dm6]	G	A	1.527e^-4	0.709	INTRON Ptp61F & 1 other
2L	14241088	2L_14241088_SNP [dm3] 2L_14241088_SNP [dm6]	G	A	1.532e^-4	0.709	UPSTREAM CR44216 EXON CR44216
3R	7470334	3R_7470334_SNP [dm3] 3R_11644612_SNP [dm6]	G	A	1.537e^-4	0.709	INTRON Csk
2R	13073681	2R_13073681_SNP [dm3] 2R_17186176_SNP [dm6]	A	G	1.541e^-4	0.709	DOWNSTREAM CR44387 INTERGENIC
3R	10152038	3R_10152038_SNP [dm3] 3R_14326316_SNP [dm6]	T	C	1.545e^-4	0.709	START_GAINED Afti UTR_5_PRIME Afti UPSTREAM CG3321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10021889	2R_10021889_SNP [dm3] 2R_14134384_SNP [dm6]	A	C	1.549e^-4	0.709	INTRON Prosap
3L	8807453	3L_8807453_SNP [dm3] 3L_8814353_SNP [dm6]	T	G	1.549e^-4	0.709	INTERGENIC
X	13365317	X_13365317_SNP [dm3] X_13471284_SNP [dm6]	C	T	1.549e^-4	0.709	INTRON Neto
3R	15039629	3R_15039629_SNP [dm3] 3R_19213907_SNP [dm6]	C	A	1.552e^-4	0.709	INTRON cry	TF binding site mE1_TFBS_cad
2R	9087987	2R_9087987_SNP [dm3] 2R_13200482_SNP [dm6]	G	A	1.559e^-4	0.709	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10302473	3L_10302473_SNP [dm3] 3L_10309373_SNP [dm6]	T	A	1.561e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11192522	3L_11192522_SNP [dm3] 3L_11199422_SNP [dm6]	C	T	1.566e^-4	0.709	UPSTREAM CG7607 INTRON Plod
3R	15763029	3R_15763029_SNP [dm3] 3R_19937307_SNP [dm6]	T	G	1.570e^-4	0.709	SYNONYMOUS_CODING Hs6st
3R	10158747	3R_10158747_SNP [dm3] 3R_14333025_SNP [dm6]	T	C	1.570e^-4	0.709	INTRON NK7.1
2L	7581714	2L_7581714_SNP [dm3] 2L_7581714_SNP [dm6]	A	T	1.573e^-4	0.709	UPSTREAM Spn28B INTERGENIC
3L	4477239	3L_4477239_SNP [dm3] 3L_4477239_SNP [dm6]	T	C	1.574e^-4	0.709	INTERGENIC
2L	2234152	2L_2234152_SNP [dm3] 2L_2234152_SNP [dm6]	T	A	1.578e^-4	0.709	INTRON Sec24CD
2L	2234153	2L_2234153_SNP [dm3] 2L_2234153_SNP [dm6]	C	A	1.578e^-4	0.709	INTRON Sec24CD
3R	10305917	3R_10305917_SNP [dm3] 3R_14480195_SNP [dm6]	G	A	1.579e^-4	0.709	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13308393	X_13308393_SNP [dm3] X_13414360_SNP [dm6]	A	G	1.584e^-4	0.709	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9270414	3R_9270414_SNP [dm3] 3R_13444692_SNP [dm6]	T	C	1.586e^-4	0.709	UPSTREAM CR45679 INTERGENIC
2R	10985612	2R_10985612_SNP [dm3] 2R_15098107_SNP [dm6]	C	A	1.589e^-4	0.709	INTERGENIC
3L	14687575	3L_14687575_SNP [dm3] 3L_14694475_SNP [dm6]	A	G	1.593e^-4	0.709	INTRON ome
3R	25664592	3R_25664592_SNP [dm3] 3R_29838870_SNP [dm6]	G	A	1.599e^-4	0.709	INTERGENIC
2L	13074565	2L_13074565_SNP [dm3] 2L_13074565_SNP [dm6]	C	T	1.599e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_inv
X	5010404	X_5010404_INS [dm3] X_5116371_INS [dm6]	G	GG	1.599e^-4	0.709	INTRON rg & 1 other
3R	16288355	3R_16288355_SNP [dm3] 3R_20462633_SNP [dm6]	G	T	1.600e^-4	0.709	INTRON Gfrl
X	14962792	X_14962792_SNP [dm3] X_15068759_SNP [dm6]	A	T	1.601e^-4	0.709	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
3L	4396116	3L_4396116_SNP [dm3] 3L_4396116_SNP [dm6]	G	A	1.606e^-4	0.709	INTRON slow
3R	13895218	3R_13895218_SNP [dm3] 3R_18069496_SNP [dm6]	A	T	1.607e^-4	0.709	INTERGENIC
3R	21301168	3R_21301168_SNP [dm3] 3R_25475446_SNP [dm6]	G	C	1.608e^-4	0.709	NON_SYNONYMOUS_CODING Vps33B DOWNSTREAM CG4553	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13846590	2R_13846590_SNP [dm3] 2R_17959085_SNP [dm6]	T	C	1.609e^-4	0.709	INTERGENIC
3L	12104834	3L_12104834_SNP [dm3] 3L_12111734_SNP [dm6]	T	G	1.609e^-4	0.709	INTERGENIC
3R	26209460	3R_26209460_SNP [dm3] 3R_30383738_SNP [dm6]	A	G	1.611e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4798405	2L_4798405_SNP [dm3] 2L_4798405_SNP [dm6]	T	A	1.612e^-4	0.709	INTRON Clect27
2R	13098900	2R_13098900_INS [dm3] 2R_17211395_INS [dm6]	A	AC	1.612e^-4	0.709	INTERGENIC
2L	12246594	2L_12246594_SNP [dm3] 2L_12246594_SNP [dm6]	C	G	1.615e^-4	0.709	INTRON aret
3R	25317466	3R_25317466_SNP [dm3] 3R_29491744_SNP [dm6]	G	A	1.618e^-4	0.709	UTR_3_PRIME CG2310 UPSTREAM Spase12 DOWNSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
X	20778081	X_20778081_SNP [dm3] X_20907054_SNP [dm6]	C	T	1.633e^-4	0.709	INTRON shakB
2R	10021876	2R_10021876_SNP [dm3] 2R_14134371_SNP [dm6]	C	G	1.636e^-4	0.709	INTRON Prosap
X	4808380	X_4808380_SNP [dm3] X_4914347_SNP [dm6]	A	G	1.640e^-4	0.709	UTR_3_PRIME CG32772 DOWNSTREAM CG4041	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8095747	X_8095747_SNP [dm3] X_8201714_SNP [dm6]	A	C	1.648e^-4	0.709	INTRON sdt
3L	16199052	3L_16199052_SNP [dm3] 3L_16205952_SNP [dm6]	T	A	1.651e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7742342	3R_7742342_SNP [dm3] 3R_11916620_SNP [dm6]	C	T	1.652e^-4	0.709	INTRON Cad87A
3R	7742335	3R_7742335_SNP [dm3] 3R_11916613_SNP [dm6]	A	T	1.656e^-4	0.709	INTRON Cad87A
3L	14687580	3L_14687580_SNP [dm3] 3L_14694480_SNP [dm6]	G	A	1.666e^-4	0.709	INTRON ome
X	20778080	X_20778080_SNP [dm3] X_20907053_SNP [dm6]	T	G	1.667e^-4	0.709	INTRON shakB
2L	19181808	2L_19181808_SNP [dm3] 2L_19181808_SNP [dm6]	G	T	1.668e^-4	0.709	UPSTREAM CG17568 DOWNSTREAM CG42688 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4043539	3L_4043539_INS [dm3] 3L_4043539_INS [dm6]	G	GGACTTGGGTTCGGG...	1.669e^-4	0.709	DOWNSTREAM Rcd5 INTERGENIC
2L	17009261	2L_17009261_SNP [dm3] 2L_17009261_SNP [dm6]	T	A	1.682e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7498201	X_7498201_SNP [dm3] X_7604168_SNP [dm6]	A	G	1.682e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13945517	2R_13945517_SNP [dm3] 2R_18058012_SNP [dm6]	T	C	1.684e^-4	0.709	UPSTREAM CG10912 EXON CR45314
2L	9451059	2L_9451059_DEL [dm3] 2L_9451059_DEL [dm6]	TTAGACTATT	T	1.693e^-4	0.709	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2L	12575964	2L_12575964_SNP [dm3] 2L_12575964_SNP [dm6]	T	C	1.693e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21647504	3R_21647504_SNP [dm3] 3R_25821782_SNP [dm6]	C	T	1.695e^-4	0.709	INTERGENIC
3L	9915617	3L_9915617_SNP [dm3] 3L_9922517_SNP [dm6]	C	A	1.698e^-4	0.709	INTRON CG34356
3R	17963637	3R_17963637_SNP [dm3] 3R_22137915_SNP [dm6]	G	A	1.704e^-4	0.709	INTRON SKIP
2R	18400169	2R_18400169_SNP [dm3] 2R_22512664_SNP [dm6]	T	C	1.705e^-4	0.709	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17670449	2R_17670449_SNP [dm3] 2R_21782944_SNP [dm6]	C	T	1.707e^-4	0.709	INTERGENIC
3R	11604006	3R_11604006_SNP [dm3] 3R_15778284_SNP [dm6]	A	C	1.712e^-4	0.709	DOWNSTREAM CG4525 INTERGENIC
3R	15039642	3R_15039642_SNP [dm3] 3R_19213920_SNP [dm6]	A	C	1.712e^-4	0.709	INTRON cry	TF binding site mE1_TFBS_cad
3L	3692349	3L_3692349_SNP [dm3] 3L_3692349_SNP [dm6]	C	G	1.713e^-4	0.709	INTERGENIC
3L	12037181	3L_12037181_SNP [dm3] 3L_12044081_SNP [dm6]	G	A	1.715e^-4	0.709	SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
X	16075006	X_16075006_SNP [dm3] X_16180973_SNP [dm6]	G	A	1.718e^-4	0.709	INTERGENIC
2L	1130203	2L_1130203_SNP [dm3] 2L_1130203_SNP [dm6]	C	T	1.719e^-4	0.709	SYNONYMOUS_CODING CG4552	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17683833	2R_17683833_SNP [dm3] 2R_21796328_SNP [dm6]	G	C	1.724e^-4	0.709	UPSTREAM CG34204 INTERGENIC
3R	16417388	3R_16417388_SNP [dm3] 3R_20591666_SNP [dm6]	G	A	1.728e^-4	0.709	DOWNSTREAM Srp72 INTRON CG4159	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3024270	3L_3024270_SNP [dm3] 3L_3024270_SNP [dm6]	A	T	1.734e^-4	0.709	UTR_3_PRIME aly DOWNSTREAM aly
3L	9830136	3L_9830136_SNP [dm3] 3L_9837036_SNP [dm6]	T	C	1.742e^-4	0.709	UPSTREAM I-2 DOWNSTREAM Cdk8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	16986960	2R_16986960_SNP [dm3] 2R_21099455_SNP [dm6]	G	A	1.742e^-4	0.709	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26209600	3R_26209600_SNP [dm3] 3R_30383878_SNP [dm6]	C	T	1.745e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12199168	2R_12199168_DEL [dm3] 2R_16311663_DEL [dm6]	GC	G	1.745e^-4	0.709	INTRON Nox	TF binding site mE1_TFBS_chinmo
2L	21027851	2L_21027851_SNP [dm3] 2L_21027851_SNP [dm6]	A	G	1.745e^-4	0.709	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2910522	2L_2910522_SNP [dm3] 2L_2910522_SNP [dm6]	A	C	1.749e^-4	0.709	INTRON lilli
3R	26857200	3R_26857200_SNP [dm3] 3R_31031478_SNP [dm6]	T	G	1.753e^-4	0.709	INTERGENIC
2L	12576068	2L_12576068_SNP [dm3] 2L_12576068_SNP [dm6]	C	T	1.753e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7518636	2L_7518636_SNP [dm3] 2L_7518636_SNP [dm6]	A	G	1.758e^-4	0.709	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	18406133	X_18406133_SNP [dm3] X_18512100_SNP [dm6]	C	T	1.760e^-4	0.709	UTR_5_PRIME Ggt-1 DOWNSTREAM CG6470	TF binding site BDTNP1_TFBS_dl
2L	13057200	2L_13057200_SNP [dm3] 2L_13057200_SNP [dm6]	C	T	1.762e^-4	0.709	INTRON CG9932
2L	2098894	2L_2098894_SNP [dm3] 2L_2098894_SNP [dm6]	T	C	1.765e^-4	0.709	INTRON dpr3
2R	10431143	2R_10431143_SNP [dm3] 2R_14543638_SNP [dm6]	T	C	1.769e^-4	0.709	DOWNSTREAM CG30076 INTRON ttv
2L	14393889	2L_14393889_SNP [dm3] 2L_14393889_SNP [dm6]	G	T	1.771e^-4	0.709	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5448019	X_5448019_SNP [dm3] X_5553986_SNP [dm6]	G	A	1.776e^-4	0.709	INTRON Vsx2
2R	6162916	2R_6162916_DEL [dm3] 2R_10275411_DEL [dm6]	CAGA	G	1.776e^-4	0.709	UPSTREAM CAP INTRON CAP
X	15152643	X_15152643_SNP [dm3] X_15258610_SNP [dm6]	C	G	1.778e^-4	0.709	INTERGENIC
2R	16986963	2R_16986963_SNP [dm3] 2R_21099458_SNP [dm6]	G	A	1.781e^-4	0.709	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	12045029	3R_12045029_SNP [dm3] 3R_16219307_SNP [dm6]	T	A	1.782e^-4	0.709	INTERGENIC
2R	15061199	2R_15061199_SNP [dm3] 2R_19173694_SNP [dm6]	A	G	1.784e^-4	0.709	INTRON CG10737
3L	10302401	3L_10302401_SNP [dm3] 3L_10309301_SNP [dm6]	T	G	1.785e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13055889	2L_13055889_SNP [dm3] 2L_13055889_SNP [dm6]	G	T	1.788e^-4	0.709	INTRON CG9932
3L	5268355	3L_5268355_SNP [dm3] 3L_5275255_SNP [dm6]	C	A	1.791e^-4	0.709	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14229181	2L_14229181_SNP [dm3] 2L_14229181_SNP [dm6]	T	C	1.797e^-4	0.709	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
2L	2707297	2L_2707297_SNP [dm3] 2L_2707297_SNP [dm6]	T	C	1.801e^-4	0.709	INTRON CG31690
3R	10056764	3R_10056764_SNP [dm3] 3R_14231042_SNP [dm6]	T	A	1.806e^-4	0.709	INTERGENIC
3R	704523	3R_704523_SNP [dm3] 3R_4878801_SNP [dm6]	C	A	1.809e^-4	0.709	UPSTREAM laf INTERGENIC
X	14526683	X_14526683_SNP [dm3] X_14632650_SNP [dm6]	G	T	1.810e^-4	0.709	INTRON NetA	TF binding site mE1_TFBS_HSA
3R	21457084	3R_21457084_SNP [dm3] 3R_25631362_SNP [dm6]	A	G	1.812e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9451154	2L_9451154_INS [dm3] 2L_9451154_INS [dm6]	G	GAG	1.824e^-4	0.709	INTRON numb
X	8095772	X_8095772_SNP [dm3] X_8201739_SNP [dm6]	C	T	1.825e^-4	0.709	INTRON sdt
3R	11593345	3R_11593345_SNP [dm3] 3R_15767623_SNP [dm6]	A	G	1.837e^-4	0.709	UPSTREAM CG5623 INTERGENIC
3R	8576334	3R_8576334_INS [dm3] 3R_12750612_INS [dm6]	A	ACGTACGTAT	1.839e^-4	0.709	INTRON beat-Vc
3R	26757345	3R_26757345_DEL [dm3] 3R_30931623_DEL [dm6]	CAGAGC	C	1.840e^-4	0.709	DOWNSTREAM Ptx1 INTERGENIC
3R	10316846	3R_10316846_SNP [dm3] 3R_14491124_SNP [dm6]	C	T	1.842e^-4	0.709	INTERGENIC
3L	2312589	3L_2312589_SNP [dm3] 3L_2312589_SNP [dm6]	G	A	1.845e^-4	0.709	INTERGENIC
2R	17422701	2R_17422701_SNP [dm3] 2R_21535196_SNP [dm6]	A	G	1.846e^-4	0.709	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9834259	2L_9834259_SNP [dm3] 2L_9834259_SNP [dm6]	C	G	1.851e^-4	0.709	INTRON nAChRalpha6
2R	10505776	2R_10505776_SNP [dm3] 2R_14618271_SNP [dm6]	T	C	1.853e^-4	0.709	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7844420	2L_7844420_SNP [dm3] 2L_7844420_SNP [dm6]	G	A	1.854e^-4	0.709	DOWNSTREAM CG14535 INTERGENIC
2R	12688249	2R_12688249_SNP [dm3] 2R_16800744_SNP [dm6]	C	T	1.855e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18791145	2R_18791145_SNP [dm3] 2R_22903622_SNP [dm6]	C	T	1.857e^-4	0.709	INTRON nahoda
3R	16799706	3R_16799706_SNP [dm3] 3R_20973984_SNP [dm6]	G	A	1.858e^-4	0.709	UTR_3_PRIME Atpalpha
2R	9197659	2R_9197659_SNP [dm3] 2R_13310154_SNP [dm6]	C	T	1.859e^-4	0.709	INTERGENIC
3R	4266206	3R_4266206_SNP [dm3] 3R_8440484_SNP [dm6]	G	T	1.861e^-4	0.709	INTRON CG45263
3R	26502110	3R_26502110_SNP [dm3] 3R_30676388_SNP [dm6]	G	A	1.863e^-4	0.709	INTERGENIC
3L	11342042	3L_11342042_SNP [dm3] 3L_11348942_SNP [dm6]	T	A	1.865e^-4	0.709	DOWNSTREAM CR45251 INTERGENIC
2R	11443414	2R_11443414_SNP [dm3] 2R_15555909_SNP [dm6]	T	C	1.866e^-4	0.709	UPSTREAM CG12963 INTRON CG12963
X	9448242	X_9448242_SNP [dm3] X_9554209_SNP [dm6]	T	A	1.872e^-4	0.709	UPSTREAM RpS28b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	18443730	3R_18443730_SNP [dm3] 3R_22618008_SNP [dm6]	T	C	1.875e^-4	0.709	SYNONYMOUS_CODING CG31161 UPSTREAM mRpL45	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15132146	2R_15132146_DEL [dm3] 2R_19244641_DEL [dm6]	TT	T	1.878e^-4	0.709	DOWNSTREAM cora INTERGENIC
3L	3485963	3L_3485963_SNP [dm3] 3L_3485963_SNP [dm6]	A	G	1.879e^-4	0.709	SYNONYMOUS_CODING CG42324 UTR_5_PRIME CG42324
3L	13755185	3L_13755185_SNP [dm3] 3L_13762085_SNP [dm6]	A	G	1.880e^-4	0.709	INTRON bru-3
3R	24732356	3R_24732356_SNP [dm3] 3R_28906634_SNP [dm6]	C	A	1.882e^-4	0.709	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9748454	3R_9748454_SNP [dm3] 3R_13922732_SNP [dm6]	G	A	1.883e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13948332	3R_13948332_SNP [dm3] 3R_18122610_SNP [dm6]	A	G	1.883e^-4	0.709	INTRON sr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	3529228	2L_3529228_SNP [dm3] 2L_3529228_SNP [dm6]	T	C	1.889e^-4	0.71	INTRON Spindly
3R	11557084	3R_11557084_SNP [dm3] 3R_15731362_SNP [dm6]	G	A	1.909e^-4	0.716	UPSTREAM CG34274 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12037194	3L_12037194_SNP [dm3] 3L_12044094_SNP [dm6]	G	C	1.919e^-4	0.716	NON_SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
2L	14347100	2L_14347100_SNP [dm3] 2L_14347100_SNP [dm6]	A	G	1.920e^-4	0.716	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
3L	19985837	3L_19985837_DEL [dm3] 3L_19992737_DEL [dm6]	AA	A	1.920e^-4	0.716	INTRON CG7646 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12137984	2R_12137984_DEL [dm3] 2R_16250479_DEL [dm6]	CATA	C	1.940e^-4	0.716	UPSTREAM CngA INTRON CngA
2L	12309819	2L_12309819_SNP [dm3] 2L_12309819_SNP [dm6]	A	C	1.941e^-4	0.716	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4201900	2L_4201900_SNP [dm3] 2L_4201900_SNP [dm6]	A	G	1.946e^-4	0.716	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2R	1373294	2R_1373294_SNP [dm3] 2R_5485789_SNP [dm6]	T	A	1.958e^-4	0.716	INTRON CG30440	transposable element FlyBase
3R	6400160	3R_6400160_SNP [dm3] 3R_10574438_SNP [dm6]	G	T	1.962e^-4	0.716	INTRON hth
2L	7728120	2L_7728120_SNP [dm3] 2L_7728120_SNP [dm6]	A	G	1.972e^-4	0.716	SYNONYMOUS_CODING CG13796
3R	5856277	3R_5856277_SNP [dm3] 3R_10030555_SNP [dm6]	A	C	1.976e^-4	0.716	INTRON Mical
2R	14580586	2R_14580586_SNP [dm3] 2R_18693081_SNP [dm6]	C	T	1.978e^-4	0.716	INTRON Sik3
2L	4209784	2L_4209784_DEL [dm3] 2L_4209784_DEL [dm6]	CC	C	1.982e^-4	0.716	INTRON ft	TF binding site mE1_TFBS_inv
3R	9778072	3R_9778072_SNP [dm3] 3R_13952350_SNP [dm6]	T	C	1.986e^-4	0.716	INTERGENIC
X	8798212	X_8798212_SNP [dm3] X_8904179_SNP [dm6]	A	C	1.991e^-4	0.716	UTR_3_PRIME e_r_ DOWNSTREAM e_r_ & 1 other
3R	7470511	3R_7470511_SNP [dm3] 3R_11644789_SNP [dm6]	G	A	2.005e^-4	0.716	INTRON Csk
2L	9439202	2L_9439202_SNP [dm3] 2L_9439202_SNP [dm6]	T	C	2.008e^-4	0.716	DOWNSTREAM CG33723 INTRON numb
3R	26485922	3R_26485922_SNP [dm3] 3R_30660200_SNP [dm6]	T	C	2.024e^-4	0.716	INTERGENIC
2L	2231145	2L_2231145_SNP [dm3] 2L_2231145_SNP [dm6]	C	A	2.034e^-4	0.716	UTR_3_PRIME Sec24CD DOWNSTREAM rti & 1 other
3L	5337519	3L_5337519_SNP [dm3] 3L_5344419_SNP [dm6]	A	G	2.035e^-4	0.716	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13271588	3R_13271588_SNP [dm3] 3R_17445866_SNP [dm6]	C	A	2.038e^-4	0.716	DOWNSTREAM Eh INTRON CG5873
3L	3692350	3L_3692350_SNP [dm3] 3L_3692350_SNP [dm6]	C	A	2.046e^-4	0.716	INTERGENIC
2R	17519304	2R_17519304_SNP [dm3] 2R_21631799_SNP [dm6]	T	G	2.055e^-4	0.716	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	13120866	2L_13120866_INS [dm3] 2L_13120866_INS [dm6]	C	CGAC	2.058e^-4	0.716	DOWNSTREAM CG43050 INTERGENIC
3L	11424471	3L_11424471_SNP [dm3] 3L_11431371_SNP [dm6]	G	C	2.063e^-4	0.716	INTERGENIC
3L	18787125	3L_18787125_SNP [dm3] 3L_18794025_SNP [dm6]	C	T	2.068e^-4	0.716	INTRON ftz-f1
2R	17607573	2R_17607573_SNP [dm3] 2R_21720068_SNP [dm6]	A	T	2.073e^-4	0.716	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8383668	2R_8383668_SNP [dm3] 2R_12496163_SNP [dm6]	A	G	2.075e^-4	0.716	NON_SYNONYMOUS_CODING s-cup INTRON fdl
3R	14939858	3R_14939858_SNP [dm3] 3R_19114136_SNP [dm6]	C	G	2.077e^-4	0.716	INTRON CG6040	transposable element FlyBase
3L	18277762	3L_18277762_SNP [dm3] 3L_18284662_SNP [dm6]	T	C	2.078e^-4	0.716	INTERGENIC
2L	5563643	2L_5563643_SNP [dm3] 2L_5563643_SNP [dm6]	G	A	2.085e^-4	0.716	DOWNSTREAM GluRIIB INTERGENIC
2R	10559279	2R_10559279_SNP [dm3] 2R_14671774_SNP [dm6]	C	A	2.086e^-4	0.716	UTR_3_PRIME mspo DOWNSTREAM mspo & 1 other
2L	9834262	2L_9834262_SNP [dm3] 2L_9834262_SNP [dm6]	T	C	2.089e^-4	0.716	INTRON nAChRalpha6
3R	7470234	3R_7470234_SNP [dm3] 3R_11644512_SNP [dm6]	C	A	2.093e^-4	0.716	INTRON Csk
3R	19557694	3R_19557694_SNP [dm3] 3R_23731972_SNP [dm6]	G	A	2.100e^-4	0.716	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
2L	12246607	2L_12246607_SNP [dm3] 2L_12246607_SNP [dm6]	T	A	2.101e^-4	0.716	INTRON aret
2L	3529201	2L_3529201_SNP [dm3] 2L_3529201_SNP [dm6]	G	A	2.104e^-4	0.716	SPLICE_SITE_REGION Spindly INTRON Spindly
3R	23926730	3R_23926730_SNP [dm3] 3R_28101008_SNP [dm6]	C	A	2.106e^-4	0.716	INTERGENIC
2R	17422498	2R_17422498_SNP [dm3] 2R_21534993_SNP [dm6]	C	A	2.111e^-4	0.716	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	10520513	X_10520513_SNP [dm3] X_10626480_SNP [dm6]	A	G	2.116e^-4	0.716	INTRON CG9806	TF binding site mE1_TFBS_chinmo
X	18453703	X_18453703_SNP [dm3] X_18559670_SNP [dm6]	C	T	2.120e^-4	0.716	INTRON Bx
3R	25373400	3R_25373400_SNP [dm3] 3R_29547678_SNP [dm6]	C	G	2.135e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26502180	3R_26502180_DEL [dm3] 3R_30676458_DEL [dm6]	GTCCTG	T	2.143e^-4	0.716	INTERGENIC
2L	14241018	2L_14241018_SNP [dm3] 2L_14241018_SNP [dm6]	C	T	2.149e^-4	0.716	UPSTREAM CR44216 INTERGENIC
2L	18644894	2L_18644894_SNP [dm3] 2L_18644894_SNP [dm6]	C	A	2.159e^-4	0.716	INTRON MESR3
3L	5304628	3L_5304628_SNP [dm3] 3L_5311528_SNP [dm6]	T	C	2.162e^-4	0.716	INTERGENIC
2R	17252981	2R_17252981_SNP [dm3] 2R_21365476_SNP [dm6]	T	C	2.162e^-4	0.716	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15061174	2R_15061174_SNP [dm3] 2R_19173669_SNP [dm6]	G	A	2.164e^-4	0.716	INTRON CG10737
2L	13074545	2L_13074545_SNP [dm3] 2L_13074545_SNP [dm6]	G	A	2.171e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11585286	3R_11585286_SNP [dm3] 3R_15759564_SNP [dm6]	T	G	2.184e^-4	0.716	INTERGENIC
X	15074288	X_15074288_SNP [dm3] X_15180255_SNP [dm6]	A	G	2.187e^-4	0.716	SYNONYMOUS_CODING CG43737	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14088565	X_14088565_SNP [dm3] X_14194532_SNP [dm6]	A	G	2.189e^-4	0.716	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
X	20778021	X_20778021_SNP [dm3] X_20906994_SNP [dm6]	A	C	2.199e^-4	0.716	INTRON shakB
3R	26485920	3R_26485920_SNP [dm3] 3R_30660198_SNP [dm6]	A	G	2.202e^-4	0.716	INTERGENIC
3R	18829699	3R_18829699_DEL [dm3] 3R_23003977_DEL [dm6]	AT	A	2.202e^-4	0.716	INTRON CG34375
X	14316151	X_14316151_SNP [dm3] X_14422118_SNP [dm6]	T	A	2.203e^-4	0.716	INTRON dpr8	TF binding site mE1_TFBS_inv
3R	706318	3R_706318_SNP [dm3] 3R_4880596_SNP [dm6]	G	A	2.204e^-4	0.716	INTERGENIC
3R	21647678	3R_21647678_SNP [dm3] 3R_25821956_SNP [dm6]	T	C	2.207e^-4	0.716	INTERGENIC
3R	12333070	3R_12333070_SNP [dm3] 3R_16507348_SNP [dm6]	C	T	2.208e^-4	0.716	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
X	4533448	X_4533448_SNP [dm3] X_4639415_SNP [dm6]	T	C	2.210e^-4	0.716	SYNONYMOUS_CODING CG3081 DOWNSTREAM pon	TF binding site mE1_TFBS_chinmo
2L	13074564	2L_13074564_SNP [dm3] 2L_13074564_SNP [dm6]	C	T	2.212e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_inv
X	2876231	X_2876231_SNP [dm3] X_2982198_SNP [dm6]	A	G	2.213e^-4	0.716	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11556686	3R_11556686_SNP [dm3] 3R_15730964_SNP [dm6]	A	T	2.213e^-4	0.716	UPSTREAM CG34274 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5344397	3L_5344397_SNP [dm3] 3L_5351297_SNP [dm6]	C	T	2.218e^-4	0.716	INTRON lama
3R	13948372	3R_13948372_SNP [dm3] 3R_18122650_SNP [dm6]	A	T	2.220e^-4	0.716	INTRON sr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	5996290	3R_5996290_SNP [dm3] 3R_10170568_SNP [dm6]	C	T	2.222e^-4	0.716	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16929532	3L_16929532_SNP [dm3] 3L_16936432_SNP [dm6]	G	C	2.223e^-4	0.716	UPSTREAM CG11905 INTERGENIC
3L	3363249	3L_3363249_SNP [dm3] 3L_3363249_SNP [dm6]	T	A	2.226e^-4	0.716	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	2293520	2L_2293520_DEL [dm3] 2L_2293520_DEL [dm6]	TTGGCAAGGGAAG...	T	2.230e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16131289	2R_16131289_SNP [dm3] 2R_20243784_SNP [dm6]	G	A	2.233e^-4	0.716	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	17794607	2R_17794607_DEL [dm3] 2R_21907102_DEL [dm6]	CAGGA	C	2.244e^-4	0.716	INTRON Fili
2L	3531221	2L_3531221_SNP [dm3] 2L_3531221_SNP [dm6]	T	A	2.247e^-4	0.716	UPSTREAM Spindly INTRON Che-13
3L	12968307	3L_12968307_SNP [dm3] 3L_12975207_SNP [dm6]	C	G	2.258e^-4	0.716	INTERGENIC
3L	3080402	3L_3080402_SNP [dm3] 3L_3080402_SNP [dm6]	C	A	2.266e^-4	0.716	INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	5509962	2L_5509962_SNP [dm3] 2L_5509962_SNP [dm6]	C	T	2.267e^-4	0.716	INTERGENIC
2L	6311047	2L_6311047_SNP [dm3] 2L_6311047_SNP [dm6]	G	A	2.268e^-4	0.716	INTRON Ddr
2R	8429174	2R_8429174_SNP [dm3] 2R_12541669_SNP [dm6]	C	T	2.274e^-4	0.716	INTRON fra	TF binding site mE1_TFBS_cad
2L	4040389	2L_4040389_INS [dm3] 2L_4040389_INS [dm6]	T	TT	2.276e^-4	0.716	INTRON ed
3L	18825039	3L_18825039_SNP [dm3] 3L_18831939_SNP [dm6]	A	G	2.277e^-4	0.716	SPLICE_SITE_REGION Indy INTRON Indy
2R	18825240	2R_18825240_SNP [dm3] 2R_22937717_SNP [dm6]	C	G	2.284e^-4	0.716	UPSTREAM CG3800 & 1 other INTRON CG9849	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8169097	2L_8169097_SNP [dm3] 2L_8169097_SNP [dm6]	T	G	2.291e^-4	0.716	INTRON Piezo
3R	11912552	3R_11912552_SNP [dm3] 3R_16086830_SNP [dm6]	C	T	2.292e^-4	0.716	SYNONYMOUS_CODING sxe2 INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11443392	2R_11443392_SNP [dm3] 2R_15555887_SNP [dm6]	G	C	2.294e^-4	0.716	UPSTREAM CG12963 INTRON CG12963
X	8128254	X_8128254_DEL [dm3] X_8234221_DEL [dm6]	TA	T	2.296e^-4	0.716	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	9175058	3R_9175058_DEL [dm3] 3R_13349336_DEL [dm6]	AA	A	2.301e^-4	0.716	INTERGENIC
3L	11190754	3L_11190754_SNP [dm3] 3L_11197654_SNP [dm6]	A	G	2.301e^-4	0.716	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16550530	X_16550530_SNP [dm3] X_16656497_SNP [dm6]	T	G	2.307e^-4	0.716	NON_SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	12246604	2L_12246604_SNP [dm3] 2L_12246604_SNP [dm6]	T	C	2.310e^-4	0.716	INTRON aret
X	20777258	X_20777258_SNP [dm3] X_20906231_SNP [dm6]	G	A	2.310e^-4	0.716	INTRON shakB
3R	15192582	3R_15192582_SNP [dm3] 3R_19366860_SNP [dm6]	A	G	2.311e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13271592	3R_13271592_SNP [dm3] 3R_17445870_SNP [dm6]	A	G	2.313e^-4	0.716	DOWNSTREAM Eh INTRON CG5873
3R	22509512	3R_22509512_SNP [dm3] 3R_26683790_SNP [dm6]	G	A	2.328e^-4	0.716	INTERGENIC
3R	21292472	3R_21292472_SNP [dm3] 3R_25466750_SNP [dm6]	T	A	2.337e^-4	0.716	INTRON Fur1
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	2.353e^-4	0.716	INTRON qin & 1 other
3R	26209721	3R_26209721_SNP [dm3] 3R_30383999_SNP [dm6]	C	T	2.354e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15010882	3R_15010882_SNP [dm3] 3R_19185160_SNP [dm6]	G	A	2.356e^-4	0.716	INTRON CG31475
2R	9457666	2R_9457666_SNP [dm3] 2R_13570161_SNP [dm6]	C	G	2.358e^-4	0.716	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	14081895	2R_14081895_SNP [dm3] 2R_18194390_SNP [dm6]	C	T	2.360e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7610411	X_7610411_SNP [dm3] X_7716378_SNP [dm6]	C	G	2.368e^-4	0.716	INTRON CG15478
3R	14939862	3R_14939862_SNP [dm3] 3R_19114140_SNP [dm6]	T	C	2.372e^-4	0.716	INTRON CG6040	transposable element FlyBase
3R	9898355	3R_9898355_SNP [dm3] 3R_14072633_SNP [dm6]	C	A	2.372e^-4	0.716	INTRON foxo
2L	11676455	2L_11676455_SNP [dm3] 2L_11676455_SNP [dm6]	T	C	2.374e^-4	0.716	INTERGENIC
2L	5038547	2L_5038547_SNP [dm3] 2L_5038547_SNP [dm6]	A	C	2.376e^-4	0.716	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12578458	2L_12578458_SNP [dm3] 2L_12578458_SNP [dm6]	G	T	2.388e^-4	0.716	INTERGENIC
3R	5331908	3R_5331908_SNP [dm3] 3R_9506186_SNP [dm6]	G	A	2.389e^-4	0.716	SYNONYMOUS_CODING rump UTR_3_PRIME rump DOWNSTREAM CG8149
2R	10560040	2R_10560040_SNP [dm3] 2R_14672535_SNP [dm6]	T	C	2.391e^-4	0.716	DOWNSTREAM CG12866 INTRON mspo
3L	5517721	3L_5517721_SNP [dm3] 3L_5524621_SNP [dm6]	A	C	2.393e^-4	0.716	INTRON Lkr
3R	11554539	3R_11554539_SNP [dm3] 3R_15728817_SNP [dm6]	C	T	2.394e^-4	0.716	INTERGENIC
X	19442183	X_19442183_MNP [dm3] X_19548150_MNP [dm6]	TCG	GAC	2.402e^-4	0.716	UPSTREAM CG32532 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	602148	2L_602148_SNP [dm3] 2L_602148_SNP [dm6]	T	A	2.403e^-4	0.716	UPSTREAM CG13689 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	514763	3R_514763_SNP [dm3] 3R_4689041_SNP [dm6]	A	T	2.404e^-4	0.716	DOWNSTREAM CG33927 INTRON CG43427
X	3290138	X_3290138_SNP [dm3] X_3396105_SNP [dm6]	A	T	2.405e^-4	0.716	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26762744	3R_26762744_SNP [dm3] 3R_30937022_SNP [dm6]	A	G	2.411e^-4	0.716	NON_SYNONYMOUS_CODING CG15550 UPSTREAM CG15549	TF binding site mE1_TFBS_chinmo
3R	26762998	3R_26762998_SNP [dm3] 3R_30937276_SNP [dm6]	A	T	2.411e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
3R	26763000	3R_26763000_SNP [dm3] 3R_30937278_SNP [dm6]	A	T	2.411e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
3R	26763051	3R_26763051_INS [dm3] 3R_30937329_INS [dm6]	C	CCAAAAGTA	2.411e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
3R	26763053	3R_26763053_SNP [dm3] 3R_30937331_SNP [dm6]	T	C	2.411e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
3R	16023335	3R_16023335_SNP [dm3] 3R_20197613_SNP [dm6]	T	C	2.412e^-4	0.716	INTERGENIC
2L	5563622	2L_5563622_SNP [dm3] 2L_5563622_SNP [dm6]	G	A	2.413e^-4	0.716	DOWNSTREAM GluRIIB INTERGENIC
3R	5008873	3R_5008873_SNP [dm3] 3R_9183151_SNP [dm6]	T	A	2.417e^-4	0.716	INTRON pum
X	9448856	X_9448856_SNP [dm3] X_9554823_SNP [dm6]	T	C	2.420e^-4	0.716	SYNONYMOUS_CODING RpS28b DOWNSTREAM CG15317	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	9488349	2L_9488349_SNP [dm3] 2L_9488349_SNP [dm6]	T	C	2.423e^-4	0.716	INTERGENIC
3R	10807767	3R_10807767_SNP [dm3] 3R_14982045_SNP [dm6]	G	A	2.427e^-4	0.716	INTERGENIC
2R	10352460	2R_10352460_SNP [dm3] 2R_14464955_SNP [dm6]	C	A	2.428e^-4	0.716	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9834740	2L_9834740_SNP [dm3] 2L_9834740_SNP [dm6]	A	G	2.435e^-4	0.716	INTRON nAChRalpha6
X	276896	X_276896_SNP [dm3] X_382863_SNP [dm6]	T	A	2.437e^-4	0.716	INTRON CG32816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9865359	3L_9865359_SNP [dm3] 3L_9872259_SNP [dm6]	T	A	2.437e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	25810884	3R_25810884_SNP [dm3] 3R_29985162_SNP [dm6]	T	A	2.445e^-4	0.716	INTRON CG7896	TF binding site mE1_TFBS_cad
2L	19253299	2L_19253299_SNP [dm3] 2L_19253299_SNP [dm6]	C	G	2.450e^-4	0.716	INTERGENIC
3R	13895198	3R_13895198_SNP [dm3] 3R_18069476_SNP [dm6]	T	G	2.456e^-4	0.716	INTERGENIC
3L	16766925	3L_16766925_SNP [dm3] 3L_16773825_SNP [dm6]	G	A	2.463e^-4	0.716	SYNONYMOUS_CODING Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	5343570	3L_5343570_SNP [dm3] 3L_5350470_SNP [dm6]	G	T	2.466e^-4	0.716	INTRON lama
2R	16619661	2R_16619661_SNP [dm3] 2R_20732156_SNP [dm6]	C	G	2.468e^-4	0.716	INTRON dpr
3L	13907086	3L_13907086_SNP [dm3] 3L_13913986_SNP [dm6]	A	G	2.469e^-4	0.716	SYNONYMOUS_CODING Rgl INTRON Rgl
X	20777259	X_20777259_SNP [dm3] X_20906232_SNP [dm6]	A	G	2.480e^-4	0.716	INTRON shakB
2R	14122589	2R_14122589_SNP [dm3] 2R_18235084_SNP [dm6]	C	T	2.480e^-4	0.716	SYNONYMOUS_CODING fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12783970	2R_12783970_SNP [dm3] 2R_16896465_SNP [dm6]	T	G	2.482e^-4	0.716	UPSTREAM CG8910 INTERGENIC
2R	18825128	2R_18825128_SNP [dm3] 2R_22937605_SNP [dm6]	T	A	2.490e^-4	0.716	UPSTREAM CG3800 & 1 other INTRON CG9849	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18680514	3R_18680514_SNP [dm3] 3R_22854792_SNP [dm6]	T	C	2.491e^-4	0.716	INTERGENIC
3R	21304005	3R_21304005_SNP [dm3] 3R_25478283_SNP [dm6]	T	C	2.492e^-4	0.716	SYNONYMOUS_CODING XNP DOWNSTREAM MED28	TF binding site mE1_TFBS_cad
3L	11344044	3L_11344044_SNP [dm3] 3L_11350944_SNP [dm6]	T	C	2.492e^-4	0.716	INTERGENIC
2R	20088435	2R_20088435_SNP [dm3] 2R_24200912_SNP [dm6]	A	T	2.498e^-4	0.716	INTRON CG3356
2L	13074527	2L_13074527_SNP [dm3] 2L_13074527_SNP [dm6]	G	A	2.499e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4491128	3L_4491128_SNP [dm3] 3L_4491128_SNP [dm6]	G	A	2.501e^-4	0.716	UPSTREAM CG13722 INTERGENIC
2L	8448877	2L_8448877_SNP [dm3] 2L_8448877_SNP [dm6]	A	T	2.507e^-4	0.716	NON_SYNONYMOUS_CODING U26 DOWNSTREAM fu12
3R	14385755	3R_14385755_SNP [dm3] 3R_18560033_SNP [dm6]	C	A	2.511e^-4	0.716	UTR_5_PRIME CG7691
3R	21894747	3R_21894747_SNP [dm3] 3R_26069025_SNP [dm6]	A	T	2.512e^-4	0.716	INTERGENIC
3R	6201685	3R_6201685_SNP [dm3] 3R_10375963_SNP [dm6]	T	C	2.512e^-4	0.716	INTRON Rfx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6386603	3L_6386603_SNP [dm3] 3L_6393503_SNP [dm6]	A	G	2.518e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	18409894	2R_18409894_SNP [dm3] 2R_22522389_SNP [dm6]	C	T	2.524e^-4	0.716	INTRON px	TF binding site mE1_TFBS_Kr
3R	5999673	3R_5999673_DEL [dm3] 3R_10173951_DEL [dm6]	ACACA	A	2.525e^-4	0.716	INTRON CG12814
X	10618379	X_10618379_SNP [dm3] X_10724346_SNP [dm6]	T	C	2.528e^-4	0.716	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
3R	511774	3R_511774_SNP [dm3] 3R_4686052_SNP [dm6]	T	C	2.531e^-4	0.716	INTRON CG43427	TF binding site mE1_TFBS_cad
3R	23942569	3R_23942569_SNP [dm3] 3R_28116847_SNP [dm6]	G	A	2.535e^-4	0.716	INTERGENIC
2R	15003386	2R_15003386_SNP [dm3] 2R_19115881_SNP [dm6]	G	C	2.539e^-4	0.716	INTRON 5-HT1A
2R	17607594	2R_17607594_DEL [dm3] 2R_21720089_DEL [dm6]	GT	A	2.549e^-4	0.716	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	3682726	2L_3682726_SNP [dm3] 2L_3682726_SNP [dm6]	A	G	2.551e^-4	0.716	INTRON CG34340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12490715	2L_12490715_SNP [dm3] 2L_12490715_SNP [dm6]	T	C	2.556e^-4	0.716	INTRON bun
2L	3529212	2L_3529212_SNP [dm3] 2L_3529212_SNP [dm6]	C	G	2.563e^-4	0.716	INTRON Spindly
2L	13962265	2L_13962265_SNP [dm3] 2L_13962265_SNP [dm6]	T	C	2.564e^-4	0.716	SYNONYMOUS_CODING NimA UTR_3_PRIME NimA
2L	14229219	2L_14229219_SNP [dm3] 2L_14229219_SNP [dm6]	T	C	2.568e^-4	0.716	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
3L	14646848	3L_14646848_SNP [dm3] 3L_14653748_SNP [dm6]	G	A	2.569e^-4	0.716	INTRON dlp
4	122304	4_122304_SNP [dm3] 4_101678_SNP [dm6]	C	A	2.570e^-4	0.716	DOWNSTREAM pan INTRON pan	transposable element FlyBase
3R	16350416	3R_16350416_SNP [dm3] 3R_20524694_SNP [dm6]	A	T	2.571e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20443305	3R_20443305_SNP [dm3] 3R_24617583_SNP [dm6]	T	C	2.575e^-4	0.716	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26054338	3R_26054338_SNP [dm3] 3R_30228616_SNP [dm6]	G	A	2.586e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	17009309	2L_17009309_SNP [dm3] 2L_17009309_SNP [dm6]	G	T	2.590e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25702874	3R_25702874_SNP [dm3] 3R_29877152_SNP [dm6]	G	A	2.594e^-4	0.716	UTR_5_PRIME CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	9325449	X_9325449_SNP [dm3] X_9431416_SNP [dm6]	A	G	2.604e^-4	0.716	INTRON mgl
2L	9488932	2L_9488932_SNP [dm3] 2L_9488932_SNP [dm6]	G	A	2.627e^-4	0.716	INTERGENIC
2L	9488943	2L_9488943_SNP [dm3] 2L_9488943_SNP [dm6]	G	C	2.627e^-4	0.716	INTERGENIC
2L	9606053	2L_9606053_SNP [dm3] 2L_9606053_SNP [dm6]	T	C	2.628e^-4	0.716	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3081044	X_3081044_SNP [dm3] X_3187011_SNP [dm6]	A	C	2.632e^-4	0.716	INTRON dnc
3L	5234898	3L_5234898_SNP [dm3] 3L_5241798_SNP [dm6]	T	A	2.633e^-4	0.716	INTRON shep
3R	26999428	3R_26999428_SNP [dm3] 3R_31173706_SNP [dm6]	T	C	2.636e^-4	0.716	INTRON Gycbeta100B
3R	13900815	3R_13900815_SNP [dm3] 3R_18075093_SNP [dm6]	C	T	2.637e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14922999	2R_14922999_SNP [dm3] 2R_19035494_SNP [dm6]	A	C	2.644e^-4	0.716	STOP_LOST CG15115
2L	9439292	2L_9439292_SNP [dm3] 2L_9439292_SNP [dm6]	A	G	2.645e^-4	0.716	DOWNSTREAM CG33723 INTRON numb
2L	4201939	2L_4201939_SNP [dm3] 2L_4201939_SNP [dm6]	T	C	2.647e^-4	0.716	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2L	14728474	2L_14728474_SNP [dm3] 2L_14728474_SNP [dm6]	A	G	2.647e^-4	0.716	INTRON CG42685
3R	6452122	3R_6452122_SNP [dm3] 3R_10626400_SNP [dm6]	A	G	2.656e^-4	0.716	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14809833	3L_14809833_SNP [dm3] 3L_14816733_SNP [dm6]	G	C	2.658e^-4	0.716	INTRON CG17839
3R	19381503	3R_19381503_SNP [dm3] 3R_23555781_SNP [dm6]	G	A	2.662e^-4	0.716	NON_SYNONYMOUS_CODING CG10164
X	20954718	X_20954718_SNP [dm3] X_21083691_SNP [dm6]	G	A	2.667e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7532903	2R_7532903_SNP [dm3] 2R_11645398_SNP [dm6]	G	A	2.671e^-4	0.716	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	17519052	2R_17519052_SNP [dm3] 2R_21631547_SNP [dm6]	T	A	2.675e^-4	0.716	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	2891913	2L_2891913_SNP [dm3] 2L_2891913_SNP [dm6]	C	T	2.679e^-4	0.716	INTRON lilli
3L	4476424	3L_4476424_SNP [dm3] 3L_4476424_SNP [dm6]	A	C	2.688e^-4	0.716	INTERGENIC
3R	14063356	3R_14063356_SNP [dm3] 3R_18237634_SNP [dm6]	T	C	2.695e^-4	0.716	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13057273	2L_13057273_SNP [dm3] 2L_13057273_SNP [dm6]	C	T	2.700e^-4	0.716	INTRON CG9932
2L	7844368	2L_7844368_SNP [dm3] 2L_7844368_SNP [dm6]	G	T	2.703e^-4	0.716	DOWNSTREAM CG14535 INTERGENIC
3R	15192696	3R_15192696_SNP [dm3] 3R_19366974_SNP [dm6]	T	C	2.705e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	21385689	3L_21385689_SNP [dm3] 3L_21392589_SNP [dm6]	A	G	2.707e^-4	0.716	INTRON rgn
2L	2238003	2L_2238003_SNP [dm3] 2L_2238003_SNP [dm6]	T	A	2.707e^-4	0.716	DOWNSTREAM CR44115 & 1 other INTRON Tengl3
2R	13826782	2R_13826782_SNP [dm3] 2R_17939277_SNP [dm6]	G	A	2.709e^-4	0.716	INTERGENIC
3L	5217508	3L_5217508_SNP [dm3] 3L_5224408_SNP [dm6]	C	T	2.711e^-4	0.716	INTRON shep
3R	25798089	3R_25798089_SNP [dm3] 3R_29972367_SNP [dm6]	A	C	2.719e^-4	0.716	INTERGENIC
3L	11966522	3L_11966522_SNP [dm3] 3L_11973422_SNP [dm6]	T	A	2.720e^-4	0.716	NON_SYNONYMOUS_CODING CG42397 UPSTREAM Muc68E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9938065	3R_9938065_SNP [dm3] 3R_14112343_SNP [dm6]	G	A	2.726e^-4	0.716	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
3R	10078058	3R_10078058_SNP [dm3] 3R_14252336_SNP [dm6]	T	C	2.728e^-4	0.716	INTRON Aats-met
3R	13819385	3R_13819385_SNP [dm3] 3R_17993663_SNP [dm6]	C	A	2.729e^-4	0.716	INTRON cpo	TF binding site mE1_TFBS_inv
3R	1696894	3R_1696894_SNP [dm3] 3R_5871172_SNP [dm6]	T	G	2.733e^-4	0.716	INTRON CG34113
3R	25072380	3R_25072380_SNP [dm3] 3R_29246658_SNP [dm6]	A	G	2.737e^-4	0.716	SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13232728	X_13232728_SNP [dm3] X_13338695_SNP [dm6]	T	C	2.738e^-4	0.716	SYNONYMOUS_CODING CG15747 UPSTREAM RpS15Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	5059152	3L_5059152_SNP [dm3] 3L_5059152_SNP [dm6]	A	G	2.738e^-4	0.716	INTRON Con
3R	21457090	3R_21457090_SNP [dm3] 3R_25631368_SNP [dm6]	T	C	2.738e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14454453	X_14454453_SNP [dm3] X_14560420_SNP [dm6]	T	C	2.742e^-4	0.716	INTERGENIC
2R	19053953	2R_19053953_SNP [dm3] 2R_23166430_SNP [dm6]	G	A	2.742e^-4	0.716	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17401853	2R_17401853_SNP [dm3] 2R_21514348_SNP [dm6]	G	A	2.744e^-4	0.716	UTR_3_PRIME MESK2 DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19129071	2L_19129071_SNP [dm3] 2L_19129071_SNP [dm6]	T	C	2.762e^-4	0.716	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
2L	7101023	2L_7101023_SNP [dm3] 2L_7101023_SNP [dm6]	A	G	2.765e^-4	0.716	INTRON Pvf3
X	3081046	X_3081046_SNP [dm3] X_3187013_SNP [dm6]	T	C	2.771e^-4	0.716	INTRON dnc
2L	9451156	2L_9451156_SNP [dm3] 2L_9451156_SNP [dm6]	T	A	2.771e^-4	0.716	INTRON numb
3R	14310419	3R_14310419_SNP [dm3] 3R_18484697_SNP [dm6]	G	C	2.772e^-4	0.716	INTRON fru
2L	4833355	2L_4833355_SNP [dm3] 2L_4833355_SNP [dm6]	T	C	2.776e^-4	0.716	SYNONYMOUS_CODING Ir25a
3L	12851064	3L_12851064_INS [dm3] 3L_12857964_INS [dm6]	T	TTTT	2.776e^-4	0.716	UTR_3_PRIME CG32107 DOWNSTREAM Ent3
3R	18983207	3R_18983207_DEL [dm3] 3R_23157485_DEL [dm6]	CAAC	C	2.777e^-4	0.716	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13057619	2L_13057619_SNP [dm3] 2L_13057619_SNP [dm6]	A	C	2.783e^-4	0.716	INTRON CG9932
3R	9163219	3R_9163219_SNP [dm3] 3R_13337497_SNP [dm6]	C	T	2.788e^-4	0.716	UPSTREAM PK2-R1 INTERGENIC
X	4089746	X_4089746_SNP [dm3] X_4195713_SNP [dm6]	C	T	2.789e^-4	0.716	INTRON Fas2
3L	11343008	3L_11343008_SNP [dm3] 3L_11349908_SNP [dm6]	A	G	2.790e^-4	0.716	UPSTREAM CR45251 INTERGENIC
2L	5509959	2L_5509959_SNP [dm3] 2L_5509959_SNP [dm6]	T	C	2.796e^-4	0.716	INTERGENIC
3R	25810931	3R_25810931_SNP [dm3] 3R_29985209_SNP [dm6]	C	A	2.800e^-4	0.716	INTRON CG7896	TF binding site mE1_TFBS_cad
3R	16654938	3R_16654938_SNP [dm3] 3R_20829216_SNP [dm6]	C	T	2.806e^-4	0.716	INTRON AdSS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	21628406	3R_21628406_SNP [dm3] 3R_25802684_SNP [dm6]	A	C	2.809e^-4	0.716	INTERGENIC
2L	8391911	2L_8391911_SNP [dm3] 2L_8391911_SNP [dm6]	T	C	2.809e^-4	0.716	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM Acp29AB
2L	12805933	2L_12805933_SNP [dm3] 2L_12805933_SNP [dm6]	G	C	2.810e^-4	0.716	INTERGENIC
2R	10538901	2R_10538901_SNP [dm3] 2R_14651396_SNP [dm6]	C	T	2.817e^-4	0.716	INTERGENIC
3R	26763068	3R_26763068_SNP [dm3] 3R_30937346_SNP [dm6]	A	G	2.819e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
3R	26763090	3R_26763090_SNP [dm3] 3R_30937368_SNP [dm6]	A	T	2.819e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
3R	26763094	3R_26763094_SNP [dm3] 3R_30937372_SNP [dm6]	G	T	2.819e^-4	0.716	UPSTREAM CG15549 & 1 other INTERGENIC
2R	17519008	2R_17519008_SNP [dm3] 2R_21631503_SNP [dm6]	T	C	2.819e^-4	0.716	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	2021925	2L_2021925_SNP [dm3] 2L_2021925_SNP [dm6]	T	C	2.822e^-4	0.716	INTRON CG4238
2R	18651222	2R_18651222_SNP [dm3] 2R_22763717_SNP [dm6]	C	T	2.833e^-4	0.716	UTR_5_PRIME CG13527 INTRON CG42260
2L	13049112	2L_13049112_SNP [dm3] 2L_13049112_SNP [dm6]	A	G	2.835e^-4	0.716	INTRON CG9932
3R	7470229	3R_7470229_SNP [dm3] 3R_11644507_SNP [dm6]	G	A	2.838e^-4	0.716	INTRON Csk
2L	19005662	2L_19005662_SNP [dm3] 2L_19005662_SNP [dm6]	A	C	2.845e^-4	0.716	SYNONYMOUS_CODING CG31793	TF binding site mE1_TFBS_chinmo
2L	13062903	2L_13062903_SNP [dm3] 2L_13062903_SNP [dm6]	T	C	2.846e^-4	0.716	INTERGENIC
2L	17009211	2L_17009211_DEL [dm3] 2L_17009211_DEL [dm6]	AA	A	2.847e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14281284	X_14281284_SNP [dm3] X_14387251_SNP [dm6]	A	T	2.852e^-4	0.716	INTRON dpr8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	919447	2L_919447_SNP [dm3] 2L_919447_SNP [dm6]	A	G	2.853e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5474461	3L_5474461_SNP [dm3] 3L_5481361_SNP [dm6]	T	C	2.854e^-4	0.716	NON_SYNONYMOUS_CODING CG4835
2L	2476852	2L_2476852_SNP [dm3] 2L_2476852_SNP [dm6]	G	C	2.856e^-4	0.716	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	2901867	2L_2901867_DEL [dm3] 2L_2901867_DEL [dm6]	TCCT	T	2.858e^-4	0.716	INTRON lilli
3L	10859778	3L_10859778_SNP [dm3] 3L_10866678_SNP [dm6]	A	G	2.875e^-4	0.716	INTRON tna
2L	2474512	2L_2474512_SNP [dm3] 2L_2474512_SNP [dm6]	T	C	2.878e^-4	0.716	INTERGENIC	regulatory region REDfly_CRMs
2L	9488926	2L_9488926_SNP [dm3] 2L_9488926_SNP [dm6]	C	T	2.878e^-4	0.716	INTERGENIC
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	2.884e^-4	0.716	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	18984007	3R_18984007_SNP [dm3] 3R_23158285_SNP [dm6]	G	C	2.887e^-4	0.716	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
2R	13918940	2R_13918940_SNP [dm3] 2R_18031435_SNP [dm6]	C	A	2.890e^-4	0.716	INTERGENIC
2R	10021890	2R_10021890_SNP [dm3] 2R_14134385_SNP [dm6]	A	C	2.896e^-4	0.716	INTRON Prosap
2R	15289587	2R_15289587_SNP [dm3] 2R_19402082_SNP [dm6]	G	T	2.902e^-4	0.716	NON_SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad
3R	13719594	3R_13719594_SNP [dm3] 3R_17893872_SNP [dm6]	C	T	2.909e^-4	0.716	INTRON Rim
3L	4396851	3L_4396851_SNP [dm3] 3L_4396851_SNP [dm6]	C	A	2.913e^-4	0.716	INTRON slow
2L	2237995	2L_2237995_SNP [dm3] 2L_2237995_SNP [dm6]	T	A	2.914e^-4	0.716	DOWNSTREAM CR44115 & 1 other INTRON Tengl3
2L	2237997	2L_2237997_SNP [dm3] 2L_2237997_SNP [dm6]	A	G	2.914e^-4	0.716	DOWNSTREAM CR44115 & 1 other INTRON Tengl3
X	3769035	X_3769035_SNP [dm3] X_3875002_SNP [dm6]	A	G	2.917e^-4	0.716	UPSTREAM CG2930 INTRON CG2930
2R	19902748	2R_19902748_SNP [dm3] 2R_24015225_SNP [dm6]	T	C	2.919e^-4	0.716	SYNONYMOUS_CODING CG4324 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14847209	2L_14847209_SNP [dm3] 2L_14847209_SNP [dm6]	G	A	2.920e^-4	0.716	INTRON CG15279
2L	4095014	2L_4095014_SNP [dm3] 2L_4095014_SNP [dm6]	A	G	2.920e^-4	0.716	INTRON ed	TF binding site BDTNP1_TFBS_twi
X	8391822	X_8391822_SNP [dm3] X_8497789_SNP [dm6]	G	A	2.936e^-4	0.716	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21303201	3R_21303201_SNP [dm3] 3R_25477479_SNP [dm6]	C	T	2.940e^-4	0.716	SYNONYMOUS_CODING MED28 UPSTREAM CG4553 DOWNSTREAM XNP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15726124	3L_15726124_SNP [dm3] 3L_15733024_SNP [dm6]	C	T	2.940e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2234159	2L_2234159_SNP [dm3] 2L_2234159_SNP [dm6]	T	A	2.941e^-4	0.716	INTRON Sec24CD
3L	3080065	3L_3080065_SNP [dm3] 3L_3080065_SNP [dm6]	T	C	2.952e^-4	0.716	INTRON CG11486
2R	19107563	2R_19107563_SNP [dm3] 2R_23220040_SNP [dm6]	T	G	2.957e^-4	0.716	INTERGENIC
2R	7330920	2R_7330920_SNP [dm3] 2R_11443415_SNP [dm6]	G	T	2.958e^-4	0.716	INTRON qvr
3L	8811243	3L_8811243_SNP [dm3] 3L_8818143_SNP [dm6]	G	A	2.962e^-4	0.716	INTERGENIC
3L	12473208	3L_12473208_SNP [dm3] 3L_12480108_SNP [dm6]	T	A	2.983e^-4	0.716	INTRON CG10663
2L	3530057	2L_3530057_SNP [dm3] 2L_3530057_SNP [dm6]	C	A	2.984e^-4	0.716	NON_SYNONYMOUS_CODING Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	24732174	3R_24732174_SNP [dm3] 3R_28906452_SNP [dm6]	T	C	2.990e^-4	0.716	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15441202	X_15441202_SNP [dm3] X_15547169_SNP [dm6]	T	A	2.992e^-4	0.716	UPSTREAM CR44354 DOWNSTREAM CR44353 INTRON Ac13E
3L	12099531	3L_12099531_SNP [dm3] 3L_12106431_SNP [dm6]	T	C	2.992e^-4	0.716	INTERGENIC
3R	22749171	3R_22749171_SNP [dm3] 3R_26923449_SNP [dm6]	G	A	2.996e^-4	0.716	INTRON sda
3R	26090786	3R_26090786_SNP [dm3] 3R_30265064_SNP [dm6]	A	T	3.008e^-4	0.716	INTERGENIC	silencer mE1_HDAC_PRE
2R	13098869	2R_13098869_SNP [dm3] 2R_17211364_SNP [dm6]	G	A	3.011e^-4	0.716	INTERGENIC
2L	14107953	2L_14107953_SNP [dm3] 2L_14107953_SNP [dm6]	A	G	3.021e^-4	0.716	DOWNSTREAM CG15293 & 1 other INTERGENIC
2L	4187882	2L_4187882_SNP [dm3] 2L_4187882_SNP [dm6]	T	A	3.021e^-4	0.716	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12246726	2L_12246726_SNP [dm3] 2L_12246726_SNP [dm6]	T	C	3.027e^-4	0.716	INTRON aret
3R	7469862	3R_7469862_SNP [dm3] 3R_11644140_SNP [dm6]	T	C	3.041e^-4	0.716	UPSTREAM Csk INTRON Csk
2R	16986886	2R_16986886_SNP [dm3] 2R_21099381_SNP [dm6]	A	T	3.044e^-4	0.716	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4023239	2L_4023239_DEL [dm3] 2L_4023239_DEL [dm6]	AA	G	3.045e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12151183	2L_12151183_SNP [dm3] 2L_12151183_SNP [dm6]	G	A	3.046e^-4	0.716	INTRON CG31760
3R	13895209	3R_13895209_SNP [dm3] 3R_18069487_SNP [dm6]	A	G	3.050e^-4	0.716	INTERGENIC
3R	10576095	3R_10576095_SNP [dm3] 3R_14750373_SNP [dm6]	C	A	3.051e^-4	0.716	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	3856908	2L_3856908_SNP [dm3] 2L_3856908_SNP [dm6]	T	C	3.055e^-4	0.716	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3L	4631703	3L_4631703_SNP [dm3] 3L_4631703_SNP [dm6]	A	T	3.056e^-4	0.716	INTRON axo
2L	16915846	2L_16915846_SNP [dm3] 2L_16915846_SNP [dm6]	A	G	3.057e^-4	0.716	INTRON tweek
3R	5750795	3R_5750795_SNP [dm3] 3R_9925073_SNP [dm6]	T	C	3.058e^-4	0.716	INTRON Glut4EF
2L	7091290	2L_7091290_SNP [dm3] 2L_7091290_SNP [dm6]	C	T	3.064e^-4	0.716	INTERGENIC
2L	12575965	2L_12575965_SNP [dm3] 2L_12575965_SNP [dm6]	A	C	3.069e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1873534	2L_1873534_SNP [dm3] 2L_1873534_SNP [dm6]	G	T	3.070e^-4	0.716	DOWNSTREAM CR44075 INTRON CG31663
3R	25285718	3R_25285718_SNP [dm3] 3R_29459996_SNP [dm6]	T	C	3.072e^-4	0.716	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19181761	2L_19181761_SNP [dm3] 2L_19181761_SNP [dm6]	T	C	3.073e^-4	0.716	UPSTREAM CG17568 DOWNSTREAM CG42688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10567881	3L_10567881_SNP [dm3] 3L_10574781_SNP [dm6]	G	T	3.076e^-4	0.716	INTRON A2bp1
2R	4228172	2R_4228172_SNP [dm3] 2R_8340667_SNP [dm6]	A	G	3.094e^-4	0.716	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10158712	3R_10158712_SNP [dm3] 3R_14332990_SNP [dm6]	C	T	3.096e^-4	0.716	INTRON NK7.1
3L	14861448	3L_14861448_SNP [dm3] 3L_14868348_SNP [dm6]	A	T	3.096e^-4	0.716	DOWNSTREAM CG17839 INTRON CG17839	TF binding site BDTNP1_TFBS_twi
2R	12784013	2R_12784013_SNP [dm3] 2R_16896508_SNP [dm6]	A	T	3.098e^-4	0.716	UPSTREAM CG8910 INTERGENIC
2L	14317103	2L_14317103_SNP [dm3] 2L_14317103_SNP [dm6]	C	T	3.098e^-4	0.716	INTRON wb
3R	21299661	3R_21299661_SNP [dm3] 3R_25473939_SNP [dm6]	C	A	3.098e^-4	0.716	SYNONYMOUS_CODING Vps33B UPSTREAM Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	12951187	X_12951187_SNP [dm3] X_13057154_SNP [dm6]	A	G	3.100e^-4	0.716	INTRON rad
3R	12333071	3R_12333071_SNP [dm3] 3R_16507349_SNP [dm6]	A	T	3.103e^-4	0.716	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	602481	2L_602481_SNP [dm3] 2L_602481_SNP [dm6]	T	G	3.108e^-4	0.716	UPSTREAM CG13689 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	8974478	X_8974478_SNP [dm3] X_9080445_SNP [dm6]	C	T	3.109e^-4	0.716	UPSTREAM HP1b INTRON CG7246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4816110	2L_4816110_SNP [dm3] 2L_4816110_SNP [dm6]	G	T	3.110e^-4	0.716	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
X	9944651	X_9944651_SNP [dm3] X_10050618_SNP [dm6]	T	A	3.112e^-4	0.716	UTR_3_PRIME Cht6 DOWNSTREAM Yp2
3R	7470531	3R_7470531_SNP [dm3] 3R_11644809_SNP [dm6]	G	A	3.113e^-4	0.716	INTRON Csk
3R	25849290	3R_25849290_SNP [dm3] 3R_30023568_SNP [dm6]	T	C	3.118e^-4	0.716	UTR_5_PRIME Axn UPSTREAM RpS28a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_sens
3L	16885840	3L_16885840_DEL [dm3] 3L_16892740_DEL [dm6]	GAGTGGAGGGGGT...	G	3.120e^-4	0.716	INTRON Lmpt
3R	10317027	3R_10317027_SNP [dm3] 3R_14491305_SNP [dm6]	T	C	3.121e^-4	0.716	INTERGENIC
3L	1727732	3L_1727732_INS [dm3] 3L_1727732_INS [dm6]	A	ATTTTGCTCAGAA...	3.124e^-4	0.716	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3L	5159543	3L_5159543_SNP [dm3] 3L_5166443_SNP [dm6]	T	C	3.124e^-4	0.716	INTRON shep
2L	3531496	2L_3531496_SNP [dm3] 2L_3531496_SNP [dm6]	G	A	3.127e^-4	0.716	SYNONYMOUS_CODING Che-13	TF binding site mE1_TFBS_sens
2L	10503262	2L_10503262_SNP [dm3] 2L_10503262_SNP [dm6]	C	T	3.128e^-4	0.716	INTRON Myo31DF
3L	10006290	3L_10006290_SNP [dm3] 3L_10013190_SNP [dm6]	A	G	3.131e^-4	0.716	INTRON dpr6	TF binding site mE1_TFBS_HSA
2L	14347099	2L_14347099_SNP [dm3] 2L_14347099_SNP [dm6]	T	C	3.139e^-4	0.716	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
X	15543623	X_15543623_SNP [dm3] X_15649590_SNP [dm6]	T	A	3.145e^-4	0.716	INTERGENIC
2L	8448872	2L_8448872_SNP [dm3] 2L_8448872_SNP [dm6]	T	C	3.146e^-4	0.716	SYNONYMOUS_CODING U26 DOWNSTREAM fu12
3L	7359117	3L_7359117_SNP [dm3] 3L_7366017_SNP [dm6]	T	A	3.151e^-4	0.716	NON_SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20778028	X_20778028_INS [dm3] X_20907001_INS [dm6]	C	CCT	3.156e^-4	0.716	INTRON shakB
2L	925072	2L_925072_SNP [dm3] 2L_925072_SNP [dm6]	T	C	3.156e^-4	0.716	INTRON CG4341
2R	10269794	2R_10269794_SNP [dm3] 2R_14382289_SNP [dm6]	T	C	3.159e^-4	0.716	SYNONYMOUS_CODING Dh44-R1
2L	9834265	2L_9834265_SNP [dm3] 2L_9834265_SNP [dm6]	G	C	3.161e^-4	0.716	INTRON nAChRalpha6
X	2651750	X_2651750_SNP [dm3] X_2757717_SNP [dm6]	A	G	3.165e^-4	0.716	INTRON kirre
3R	8604329	3R_8604329_SNP [dm3] 3R_12778607_SNP [dm6]	T	C	3.166e^-4	0.716	INTRON beat-Vc
2R	7521481	2R_7521481_SNP [dm3] 2R_11633976_SNP [dm6]	C	T	3.171e^-4	0.716	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	18251496	X_18251496_SNP [dm3] X_18357463_SNP [dm6]	G	A	3.175e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	738136	3R_738136_SNP [dm3] 3R_4912414_SNP [dm6]	A	G	3.176e^-4	0.716	INTRON Cdep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20646266	X_20646266_SNP [dm3] X_20775239_SNP [dm6]	A	G	3.177e^-4	0.716	INTRON shakB
3R	21637905	3R_21637905_SNP [dm3] 3R_25812183_SNP [dm6]	G	A	3.177e^-4	0.716	SYNONYMOUS_CODING CG17770 UTR_5_PRIME Acam UPSTREAM Acam DOWNSTREAM CG5024
3L	4272918	3L_4272918_SNP [dm3] 3L_4272918_SNP [dm6]	T	C	3.180e^-4	0.716	INTRON CG1273	TF binding site mE1_TFBS_Trl
3R	3497951	3R_3497951_SNP [dm3] 3R_7672229_SNP [dm6]	C	G	3.181e^-4	0.716	INTRON Nlg1
2L	4848178	2L_4848178_SNP [dm3] 2L_4848178_SNP [dm6]	T	G	3.198e^-4	0.716	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2R	16583166	2R_16583166_SNP [dm3] 2R_20695661_SNP [dm6]	A	G	3.200e^-4	0.716	INTERGENIC
2L	14393847	2L_14393847_SNP [dm3] 2L_14393847_SNP [dm6]	T	A	3.202e^-4	0.716	INTRON elB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3079865	3L_3079865_SNP [dm3] 3L_3079865_SNP [dm6]	G	A	3.203e^-4	0.716	INTRON CG11486
3R	25023197	3R_25023197_SNP [dm3] 3R_29197475_SNP [dm6]	A	G	3.206e^-4	0.716	UPSTREAM CG14515 INTERGENIC
3R	25285200	3R_25285200_SNP [dm3] 3R_29459478_SNP [dm6]	T	C	3.212e^-4	0.716	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3907075	X_3907075_SNP [dm3] X_4013042_SNP [dm6]	A	T	3.222e^-4	0.716	INTERGENIC
3L	10741634	3L_10741634_SNP [dm3] 3L_10748534_SNP [dm6]	T	A	3.230e^-4	0.716	INTERGENIC
3L	6086394	3L_6086394_SNP [dm3] 3L_6093294_SNP [dm6]	T	C	3.236e^-4	0.716	UTR_5_PRIME CG10469 UTR_3_PRIME CG10467
2L	952573	2L_952573_SNP [dm3] 2L_952573_SNP [dm6]	T	C	3.248e^-4	0.716	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2983117	3R_2983117_SNP [dm3] 3R_7157395_SNP [dm6]	C	T	3.249e^-4	0.716	INTERGENIC
2L	9834264	2L_9834264_SNP [dm3] 2L_9834264_SNP [dm6]	G	C	3.255e^-4	0.716	INTRON nAChRalpha6
3R	13309393	3R_13309393_SNP [dm3] 3R_17483671_SNP [dm6]	C	T	3.258e^-4	0.716	INTRON Dscam3
2L	7120277	2L_7120277_SNP [dm3] 2L_7120277_SNP [dm6]	G	T	3.259e^-4	0.716	INTRON Pvf3
2R	14704154	2R_14704154_SNP [dm3] 2R_18816649_SNP [dm6]	A	G	3.262e^-4	0.716	UPSTREAM CG15096 INTERGENIC
2L	13049212	2L_13049212_SNP [dm3] 2L_13049212_SNP [dm6]	T	C	3.262e^-4	0.716	INTRON CG9932
2L	7486285	2L_7486285_DEL [dm3] 2L_7486285_DEL [dm6]	TGCTACAATTTCGTTCGGAA...	T	3.263e^-4	0.716	INTRON Ziz
3L	16549927	3L_16549927_SNP [dm3] 3L_16556827_SNP [dm6]	C	T	3.271e^-4	0.716	UTR_5_PRIME CG4229	TF binding site mE1_TFBS_cad
3L	5353108	3L_5353108_SNP [dm3] 3L_5360008_SNP [dm6]	A	C	3.274e^-4	0.716	UPSTREAM CG4769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	16460822	2R_16460822_SNP [dm3] 2R_20573317_SNP [dm6]	T	A	3.290e^-4	0.716	INTRON qsm	TF binding site mE1_TFBS_chinmo
3R	19604361	3R_19604361_SNP [dm3] 3R_23778639_SNP [dm6]	T	C	3.292e^-4	0.716	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_sens
X	3421115	X_3421115_SNP [dm3] X_3527082_SNP [dm6]	C	T	3.292e^-4	0.716	INTRON CG32791
X	12071318	X_12071318_SNP [dm3] X_12177285_SNP [dm6]	G	A	3.304e^-4	0.716	SYNONYMOUS_CODING CG1924 INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2039677	2L_2039677_SNP [dm3] 2L_2039677_SNP [dm6]	G	C	3.306e^-4	0.716	UPSTREAM Su_dx_ INTRON Su_dx_
X	15543612	X_15543612_SNP [dm3] X_15649579_SNP [dm6]	G	A	3.306e^-4	0.716	INTERGENIC
3L	22828720	3L_22828720_SNP [dm3] 3L_22835620_SNP [dm6]	A	T	3.308e^-4	0.716	UPSTREAM jim DOWNSTREAM CG45428 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6167492	2R_6167492_SNP [dm3] 2R_10279987_SNP [dm6]	C	A	3.312e^-4	0.716	NON_SYNONYMOUS_CODING CAP INTRON CAP
X	2876224	X_2876224_DEL [dm3] X_2982191_DEL [dm6]	CAC	C	3.313e^-4	0.716	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16083285	2L_16083285_SNP [dm3] 2L_16083285_SNP [dm6]	C	T	3.314e^-4	0.716	INTERGENIC
2R	15448395	2R_15448395_SNP [dm3] 2R_19560890_SNP [dm6]	T	A	3.317e^-4	0.716	INTRON sm
2L	10066365	2L_10066365_SNP [dm3] 2L_10066365_SNP [dm6]	G	T	3.322e^-4	0.716	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
3R	18553720	3R_18553720_SNP [dm3] 3R_22727998_SNP [dm6]	T	G	3.324e^-4	0.716	INTRON CG45049	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10320894	3R_10320894_SNP [dm3] 3R_14495172_SNP [dm6]	G	A	3.327e^-4	0.716	INTERGENIC
2L	8448911	2L_8448911_SNP [dm3] 2L_8448911_SNP [dm6]	C	T	3.329e^-4	0.716	SYNONYMOUS_CODING U26 DOWNSTREAM fu12
2L	13057180	2L_13057180_SNP [dm3] 2L_13057180_SNP [dm6]	A	C	3.336e^-4	0.716	INTRON CG9932
3R	9187215	3R_9187215_SNP [dm3] 3R_13361493_SNP [dm6]	G	A	3.337e^-4	0.716	DOWNSTREAM poly INTERGENIC
3R	25849183	3R_25849183_SNP [dm3] 3R_30023461_SNP [dm6]	G	T	3.339e^-4	0.716	UTR_5_PRIME Axn UPSTREAM RpS28a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_sens
3R	7742303	3R_7742303_SNP [dm3] 3R_11916581_SNP [dm6]	A	G	3.354e^-4	0.716	INTRON Cad87A
2L	18994197	2L_18994197_SNP [dm3] 2L_18994197_SNP [dm6]	A	C	3.359e^-4	0.716	NON_SYNONYMOUS_CODING CG10650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22021577	X_22021577_DEL [dm3] X_22619741_DEL [dm6]	AA	A	3.360e^-4	0.716	SPLICE_SITE_REGION Cda4 INTRON Cda4
X	16543858	X_16543858_SNP [dm3] X_16649825_SNP [dm6]	T	A	3.367e^-4	0.716	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
2L	12447256	2L_12447256_SNP [dm3] 2L_12447256_SNP [dm6]	G	A	3.368e^-4	0.716	SYNONYMOUS_CODING CG5421
3L	4314003	3L_4314003_SNP [dm3] 3L_4314003_SNP [dm6]	A	C	3.369e^-4	0.716	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16110843	2R_16110843_SNP [dm3] 2R_20223338_SNP [dm6]	C	T	3.370e^-4	0.716	INTERGENIC
3R	3497927	3R_3497927_SNP [dm3] 3R_7672205_SNP [dm6]	A	G	3.371e^-4	0.716	INTRON Nlg1
3R	22979783	3R_22979783_SNP [dm3] 3R_27154061_SNP [dm6]	G	T	3.373e^-4	0.716	INTRON Men-b
2R	11443268	2R_11443268_SNP [dm3] 2R_15555763_SNP [dm6]	C	T	3.375e^-4	0.716	UTR_5_PRIME CG12963 UPSTREAM CG12963 INTRON CG12963
3R	9817339	3R_9817339_SNP [dm3] 3R_13991617_SNP [dm6]	A	T	3.375e^-4	0.716	INTRON rdx
3L	16766787	3L_16766787_SNP [dm3] 3L_16773687_SNP [dm6]	T	G	3.379e^-4	0.716	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10567605	3L_10567605_SNP [dm3] 3L_10574505_SNP [dm6]	T	A	3.385e^-4	0.716	INTRON A2bp1
2R	9248054	2R_9248054_SNP [dm3] 2R_13360549_SNP [dm6]	G	A	3.390e^-4	0.716	INTERGENIC
3L	161739	3L_161739_DEL [dm3] 3L_161739_DEL [dm6]	CCTCCAGA	C	3.395e^-4	0.716	INTRON p130CAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4491221	3L_4491221_SNP [dm3] 3L_4491221_SNP [dm6]	T	C	3.405e^-4	0.716	UPSTREAM CG13722 INTERGENIC
2R	17024971	2R_17024971_SNP [dm3] 2R_21137466_SNP [dm6]	T	C	3.409e^-4	0.716	INTRON Magi
3L	7589404	3L_7589404_INS [dm3] 3L_7596304_INS [dm6]	A	AA	3.415e^-4	0.716	UPSTREAM CG33275 INTRON CG33275
3L	10132114	3L_10132114_SNP [dm3] 3L_10139014_SNP [dm6]	G	T	3.417e^-4	0.716	UTR_3_PRIME dpr6
3R	16878535	3R_16878535_SNP [dm3] 3R_21052813_SNP [dm6]	A	C	3.419e^-4	0.716	DOWNSTREAM Mvl INTRON Mvl
2L	3872063	2L_3872063_SNP [dm3] 2L_3872063_SNP [dm6]	C	T	3.422e^-4	0.716	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	11568639	3R_11568639_SNP [dm3] 3R_15742917_SNP [dm6]	A	G	3.422e^-4	0.716	INTERGENIC
3L	16010664	3L_16010664_SNP [dm3] 3L_16017564_SNP [dm6]	C	T	3.424e^-4	0.716	EXON CR43950	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10808595	3R_10808595_SNP [dm3] 3R_14982873_SNP [dm6]	G	A	3.427e^-4	0.716	INTERGENIC
2R	10291881	2R_10291881_SNP [dm3] 2R_14404376_SNP [dm6]	A	T	3.431e^-4	0.716	INTERGENIC
3L	15674344	3L_15674344_SNP [dm3] 3L_15681244_SNP [dm6]	G	A	3.432e^-4	0.716	NON_SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2L	13057362	2L_13057362_SNP [dm3] 2L_13057362_SNP [dm6]	A	G	3.436e^-4	0.716	INTRON CG9932
2L	18388346	2L_18388346_DEL [dm3] 2L_18388346_DEL [dm6]	TT	T	3.442e^-4	0.716	INTRON Fas3
2L	8448868	2L_8448868_SNP [dm3] 2L_8448868_SNP [dm6]	G	T	3.442e^-4	0.716	NON_SYNONYMOUS_CODING U26 DOWNSTREAM fu12
3R	9938046	3R_9938046_SNP [dm3] 3R_14112324_SNP [dm6]	G	A	3.444e^-4	0.716	UPSTREAM CG14357 DOWNSTREAM Kif19A INTERGENIC
3R	25705911	3R_25705911_SNP [dm3] 3R_29880189_SNP [dm6]	A	G	3.446e^-4	0.716	INTRON CG31038
X	3072306	X_3072306_DEL [dm3] X_3178273_DEL [dm6]	GA	G	3.447e^-4	0.716	INTRON dnc
2L	13056254	2L_13056254_SNP [dm3] 2L_13056254_SNP [dm6]	G	A	3.448e^-4	0.716	INTRON CG9932
2L	5563647	2L_5563647_SNP [dm3] 2L_5563647_SNP [dm6]	C	G	3.450e^-4	0.716	DOWNSTREAM GluRIIB INTERGENIC
3L	9811676	3L_9811676_INS [dm3] 3L_9818576_INS [dm6]	T	TC	3.451e^-4	0.716	UPSTREAM CG43897 INTRON CG43897	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17519294	2R_17519294_DEL [dm3] 2R_21631789_DEL [dm6]	AACT	A	3.463e^-4	0.716	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	19181734	2L_19181734_SNP [dm3] 2L_19181734_SNP [dm6]	A	G	3.465e^-4	0.716	UPSTREAM CG17568 DOWNSTREAM CG42688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3575185	2L_3575185_SNP [dm3] 2L_3575185_SNP [dm6]	G	C	3.467e^-4	0.716	UPSTREAM CR43822 INTERGENIC
X	18873307	X_18873307_SNP [dm3] X_18979274_SNP [dm6]	A	G	3.480e^-4	0.716	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15726086	3L_15726086_SNP [dm3] 3L_15732986_SNP [dm6]	A	G	3.480e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	4613527	X_4613527_SNP [dm3] X_4719494_SNP [dm6]	C	T	3.482e^-4	0.716	INTRON Proc-R
2L	3348399	2L_3348399_SNP [dm3] 2L_3348399_SNP [dm6]	T	C	3.485e^-4	0.716	INTRON E23
3R	21300261	3R_21300261_SNP [dm3] 3R_25474539_SNP [dm6]	T	C	3.487e^-4	0.716	NON_SYNONYMOUS_CODING Vps33B
2L	3530255	2L_3530255_SNP [dm3] 2L_3530255_SNP [dm6]	C	T	3.487e^-4	0.716	NON_SYNONYMOUS_CODING Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3R	598511	3R_598511_SNP [dm3] 3R_4772789_SNP [dm6]	G	C	3.489e^-4	0.716	INTRON atms & 1 other
3L	739802	3L_739802_SNP [dm3] 3L_739802_SNP [dm6]	G	A	3.494e^-4	0.716	UPSTREAM hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10447594	2R_10447594_SNP [dm3] 2R_14560089_SNP [dm6]	C	T	3.495e^-4	0.716	INTRON ttv
X	13410348	X_13410348_SNP [dm3] X_13516315_SNP [dm6]	C	A	3.514e^-4	0.717	INTRON Neto
2R	18985959	2R_18985959_SNP [dm3] 2R_23098436_SNP [dm6]	T	C	3.514e^-4	0.717	INTERGENIC
2R	8186594	2R_8186594_SNP [dm3] 2R_12299089_SNP [dm6]	C	G	3.519e^-4	0.717	UTR_3_PRIME CG42700 DOWNSTREAM CG42700 INTRON CG8850
2R	15284412	2R_15284412_SNP [dm3] 2R_19396907_SNP [dm6]	T	G	3.521e^-4	0.717	UPSTREAM SdhA & 1 other DOWNSTREAM hts INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	10993398	3R_10993398_SNP [dm3] 3R_15167676_SNP [dm6]	G	C	3.530e^-4	0.717	INTRON Gyc88E
3R	8616009	3R_8616009_SNP [dm3] 3R_12790287_SNP [dm6]	G	C	3.532e^-4	0.717	INTERGENIC
3R	15095457	3R_15095457_SNP [dm3] 3R_19269735_SNP [dm6]	G	C	3.534e^-4	0.717	INTERGENIC
2L	9451086	2L_9451086_SNP [dm3] 2L_9451086_SNP [dm6]	T	C	3.537e^-4	0.717	INTRON numb	TF binding site BDTNP1_TFBS_dl
2R	13668821	2R_13668821_SNP [dm3] 2R_17781316_SNP [dm6]	G	A	3.540e^-4	0.717	INTRON fab1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	19453404	X_19453404_SNP [dm3] X_19559371_SNP [dm6]	A	G	3.540e^-4	0.717	DOWNSTREAM mir-4966 & 4 others INTERGENIC
3L	5352874	3L_5352874_SNP [dm3] 3L_5359774_SNP [dm6]	G	A	3.550e^-4	0.718	UPSTREAM CG4769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11586175	3R_11586175_DEL [dm3] 3R_15760453_DEL [dm6]	GG	G	3.552e^-4	0.718	INTERGENIC
3L	20748903	3L_20748903_SNP [dm3] 3L_20755803_SNP [dm6]	T	G	3.561e^-4	0.719	UPSTREAM CG33912 INTERGENIC	TF binding site mE1_TFBS_inv
2L	19129079	2L_19129079_SNP [dm3] 2L_19129079_SNP [dm6]	C	T	3.572e^-4	0.72	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3L	4240288	3L_4240288_DEL [dm3] 3L_4240288_DEL [dm6]	CC	C	3.572e^-4	0.72	UPSTREAM CG14997 INTRON CG14997 EXON CR45738	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8217243	2R_8217243_SNP [dm3] 2R_12329738_SNP [dm6]	A	G	3.580e^-4	0.72	INTRON garz	TF binding site mE1_TFBS_cad
3R	6365756	3R_6365756_SNP [dm3] 3R_10540034_SNP [dm6]	T	A	3.591e^-4	0.721	INTRON hth	TF binding site mE1_TFBS_cad
X	16402988	X_16402988_SNP [dm3] X_16508955_SNP [dm6]	T	C	3.598e^-4	0.721	INTRON para
3R	26209725	3R_26209725_INS [dm3] 3R_30384003_INS [dm6]	C	CTC	3.600e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9856160	3R_9856160_SNP [dm3] 3R_14030438_SNP [dm6]	C	T	3.603e^-4	0.721	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl
2R	16986639	2R_16986639_SNP [dm3] 2R_21099134_SNP [dm6]	A	G	3.603e^-4	0.721	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
2R	10801286	2R_10801286_SNP [dm3] 2R_14913781_SNP [dm6]	A	G	3.610e^-4	0.721	INTRON CG10249
2L	14393891	2L_14393891_DEL [dm3] 2L_14393891_DEL [dm6]	TTGAAAATTTAAATTATTGA...	T	3.615e^-4	0.721	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20778020	X_20778020_SNP [dm3] X_20906993_SNP [dm6]	A	C	3.620e^-4	0.721	INTRON shakB
2R	16479305	2R_16479305_SNP [dm3] 2R_20591800_SNP [dm6]	C	G	3.633e^-4	0.721	INTRON bl	TF binding site BDTNP1_TFBS_dl
3R	9869450	3R_9869450_SNP [dm3] 3R_14043728_SNP [dm6]	T	C	3.634e^-4	0.721	DOWNSTREAM tRNA:S2b:88A INTERGENIC
2R	9281638	2R_9281638_SNP [dm3] 2R_13394133_SNP [dm6]	T	A	3.635e^-4	0.721	UPSTREAM CG43691 DOWNSTREAM CG4744 INTRON AttC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8615985	3R_8615985_SNP [dm3] 3R_12790263_SNP [dm6]	C	G	3.639e^-4	0.721	INTERGENIC
X	12405508	X_12405508_SNP [dm3] X_12511475_SNP [dm6]	C	T	3.639e^-4	0.721	INTRON CG2556
2L	1889834	2L_1889834_SNP [dm3] 2L_1889834_SNP [dm6]	T	G	3.647e^-4	0.721	INTRON CG7337
2L	14211265	2L_14211265_SNP [dm3] 2L_14211265_SNP [dm6]	A	C	3.649e^-4	0.721	INTRON Dyrk2
2L	11530671	2L_11530671_SNP [dm3] 2L_11530671_SNP [dm6]	C	G	3.656e^-4	0.721	SYNONYMOUS_CODING CG31706
2L	9488930	2L_9488930_SNP [dm3] 2L_9488930_SNP [dm6]	G	A	3.659e^-4	0.721	INTERGENIC
2R	10600020	2R_10600020_SNP [dm3] 2R_14712515_SNP [dm6]	T	A	3.662e^-4	0.721	INTRON mspo
2L	13061615	2L_13061615_SNP [dm3] 2L_13061615_SNP [dm6]	C	A	3.662e^-4	0.721	INTERGENIC
2L	15941290	2L_15941290_SNP [dm3] 2L_15941290_SNP [dm6]	T	C	3.663e^-4	0.721	UPSTREAM CG12448 INTRON beat-Ib
3L	13735230	3L_13735230_SNP [dm3] 3L_13742130_SNP [dm6]	C	A	3.665e^-4	0.721	INTRON bru-3
X	20819290	X_20819290_SNP [dm3] X_20948263_SNP [dm6]	G	A	3.672e^-4	0.722	INTERGENIC
2L	12246668	2L_12246668_SNP [dm3] 2L_12246668_SNP [dm6]	A	G	3.679e^-4	0.722	INTRON aret
3R	16350438	3R_16350438_SNP [dm3] 3R_20524716_SNP [dm6]	T	C	3.682e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11231731	2L_11231731_SNP [dm3] 2L_11231731_SNP [dm6]	G	A	3.697e^-4	0.724	INTRON ab
X	11361835	X_11361835_SNP [dm3] X_11467802_SNP [dm6]	A	G	3.697e^-4	0.724	INTRON CG43155
3R	3456067	3R_3456067_SNP [dm3] 3R_7630345_SNP [dm6]	G	A	3.705e^-4	0.724	INTRON CG34127
3R	6449926	3R_6449926_SNP [dm3] 3R_10624204_SNP [dm6]	A	C	3.712e^-4	0.724	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13056230	2L_13056230_SNP [dm3] 2L_13056230_SNP [dm6]	G	T	3.713e^-4	0.724	INTRON CG9932
2R	20227204	2R_20227204_SNP [dm3] 2R_24339681_SNP [dm6]	C	T	3.713e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11679291	X_11679291_SNP [dm3] X_11785258_SNP [dm6]	A	C	3.728e^-4	0.725	INTERGENIC
2L	13056326	2L_13056326_SNP [dm3] 2L_13056326_SNP [dm6]	T	C	3.731e^-4	0.725	INTRON CG9932
X	5120061	X_5120061_SNP [dm3] X_5226028_SNP [dm6]	C	T	3.737e^-4	0.725	INTRON CG15465 & 1 other
2R	16479294	2R_16479294_SNP [dm3] 2R_20591789_SNP [dm6]	A	C	3.745e^-4	0.725	INTRON bl	TF binding site BDTNP1_TFBS_dl
2L	16900542	2L_16900542_SNP [dm3] 2L_16900542_SNP [dm6]	T	C	3.746e^-4	0.725	UTR_3_PRIME CG12288 UPSTREAM CG31805 INTRON tweek
2R	19137301	2R_19137301_DEL [dm3] 2R_23249778_DEL [dm6]	GATAC	G	3.748e^-4	0.725	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8128380	X_8128380_INS [dm3] X_8234347_INS [dm6]	C	CACAACCTC	3.770e^-4	0.725	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14809836	3L_14809836_SNP [dm3] 3L_14816736_SNP [dm6]	A	C	3.770e^-4	0.725	INTRON CG17839
3R	17015617	3R_17015617_SNP [dm3] 3R_21189895_SNP [dm6]	G	T	3.772e^-4	0.725	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	18986646	2R_18986646_SNP [dm3] 2R_23099123_SNP [dm6]	T	A	3.776e^-4	0.725	DOWNSTREAM RpL37b INTERGENIC
3R	2937329	3R_2937329_SNP [dm3] 3R_7111607_SNP [dm6]	A	G	3.781e^-4	0.725	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	478387	3L_478387_SNP [dm3] 3L_478387_SNP [dm6]	C	G	3.789e^-4	0.725	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13062297	2L_13062297_SNP [dm3] 2L_13062297_SNP [dm6]	T	C	3.791e^-4	0.725	INTERGENIC
2L	10997012	2L_10997012_SNP [dm3] 2L_10997012_SNP [dm6]	T	A	3.793e^-4	0.725	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 & 1 other INTRON CG16833
3L	740238	3L_740238_SNP [dm3] 3L_740238_SNP [dm6]	T	G	3.797e^-4	0.725	UPSTREAM hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10993043	2R_10993043_SNP [dm3] 2R_15105538_SNP [dm6]	G	A	3.798e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16800463	3L_16800463_SNP [dm3] 3L_16807363_SNP [dm6]	A	G	3.805e^-4	0.725	INTRON CG9674 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15568696	3R_15568696_SNP [dm3] 3R_19742974_SNP [dm6]	C	T	3.805e^-4	0.725	DOWNSTREAM CR43488 INTRON GluClalpha
2L	6185624	2L_6185624_SNP [dm3] 2L_6185624_SNP [dm6]	T	G	3.808e^-4	0.725	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	21089044	X_21089044_SNP [dm3] X_21218017_SNP [dm6]	T	G	3.819e^-4	0.725	SYNONYMOUS_CODING CG32523 INTRON CG32521
3L	4642361	3L_4642361_DEL [dm3] 3L_4642361_DEL [dm6]	TT	T	3.821e^-4	0.725	UTR_3_PRIME axo INTRON axo
3R	17777020	3R_17777020_SNP [dm3] 3R_21951298_SNP [dm6]	T	C	3.832e^-4	0.725	INTRON Eip93F	TF binding site mE1_TFBS_cad
2L	12578453	2L_12578453_SNP [dm3] 2L_12578453_SNP [dm6]	A	T	3.845e^-4	0.725	INTERGENIC
2R	10600260	2R_10600260_SNP [dm3] 2R_14712755_SNP [dm6]	T	A	3.847e^-4	0.725	INTRON mspo
2R	20371650	2R_20371650_SNP [dm3] 2R_24484127_SNP [dm6]	A	T	3.847e^-4	0.725	INTRON CG13579
3R	19401337	3R_19401337_SNP [dm3] 3R_23575615_SNP [dm6]	C	G	3.847e^-4	0.725	INTRON beat-IV
2L	18994360	2L_18994360_SNP [dm3] 2L_18994360_SNP [dm6]	T	C	3.854e^-4	0.725	SYNONYMOUS_CODING CG10650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19401491	3R_19401491_SNP [dm3] 3R_23575769_SNP [dm6]	A	G	3.857e^-4	0.725	INTRON beat-IV
2L	1719763	2L_1719763_SNP [dm3] 2L_1719763_SNP [dm6]	C	G	3.858e^-4	0.725	INTRON Rim2
2R	15159428	2R_15159428_SNP [dm3] 2R_19271923_SNP [dm6]	C	T	3.861e^-4	0.725	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	6763304	2L_6763304_SNP [dm3] 2L_6763304_SNP [dm6]	C	T	3.866e^-4	0.725	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15283936	2R_15283936_SNP [dm3] 2R_19396431_SNP [dm6]	A	G	3.870e^-4	0.725	SYNONYMOUS_CODING cer UPSTREAM SdhA DOWNSTREAM hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8632622	3R_8632622_SNP [dm3] 3R_12806900_SNP [dm6]	T	G	3.877e^-4	0.725	INTERGENIC
2L	2482453	2L_2482453_SNP [dm3] 2L_2482453_SNP [dm6]	A	G	3.879e^-4	0.725	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	17611844	2L_17611844_SNP [dm3] 2L_17611844_SNP [dm6]	G	A	3.881e^-4	0.725	INTERGENIC
3L	18259775	3L_18259775_SNP [dm3] 3L_18266675_SNP [dm6]	A	C	3.881e^-4	0.725	INTERGENIC
3L	3080597	3L_3080597_SNP [dm3] 3L_3080597_SNP [dm6]	T	C	3.886e^-4	0.725	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	26209626	3R_26209626_SNP [dm3] 3R_30383904_SNP [dm6]	A	T	3.904e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.613e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2248 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	3550187	X_3550187_SNP [dm3] X_3656154_SNP [dm6]	C	A	1.526e^-7	0.17	INTRON AstA-R1
2L	7900729	2L_7900729_SNP [dm3] 2L_7900729_SNP [dm6]	T	C	3.639e^-7	0.17	INTRON Snoo
X	3549193	X_3549193_SNP [dm3] X_3655160_SNP [dm6]	C	T	6.356e^-7	0.17	INTRON AstA-R1
X	3549860	X_3549860_INS [dm3] X_3655827_INS [dm6]	C	CATATAACCTC...	8.999e^-7	0.17	INTRON AstA-R1
X	3549563	X_3549563_SNP [dm3] X_3655530_SNP [dm6]	T	A	1.044e^-6	0.17	INTRON AstA-R1
X	3549539	X_3549539_SNP [dm3] X_3655506_SNP [dm6]	C	A	1.113e^-6	0.17	INTRON AstA-R1
X	3550449	X_3550449_SNP [dm3] X_3656416_SNP [dm6]	C	A	1.143e^-6	0.17	INTRON AstA-R1
3L	5015948	3L_5015948_SNP [dm3] 3L_5015948_SNP [dm6]	C	A	1.143e^-6	0.17	INTRON Con
2L	7900801	2L_7900801_SNP [dm3] 2L_7900801_SNP [dm6]	G	C	1.213e^-6	0.17	INTRON Snoo
2R	17518981	2R_17518981_SNP [dm3] 2R_21631476_SNP [dm6]	T	C	1.341e^-6	0.17	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	7900758	2L_7900758_INS [dm3] 2L_7900758_INS [dm6]	A	AA	1.363e^-6	0.17	INTRON Snoo
X	3549577	X_3549577_SNP [dm3] X_3655544_SNP [dm6]	G	A	1.397e^-6	0.17	INTRON AstA-R1
2R	17518247	2R_17518247_SNP [dm3] 2R_21630742_SNP [dm6]	C	A	1.443e^-6	0.17	NON_SYNONYMOUS_CODING mahj DOWNSTREAM CR42547	TF binding site mE1_TFBS_cad
2R	17519008	2R_17519008_SNP [dm3] 2R_21631503_SNP [dm6]	T	C	1.543e^-6	0.17	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
X	13011867	X_13011867_SNP [dm3] X_13117834_SNP [dm6]	T	A	1.780e^-6	0.17	INTRON CG42237
X	3549374	X_3549374_SNP [dm3] X_3655341_SNP [dm6]	T	C	1.825e^-6	0.17	INTRON AstA-R1
2L	7900734	2L_7900734_SNP [dm3] 2L_7900734_SNP [dm6]	T	C	1.837e^-6	0.17	INTRON Snoo
3L	5015947	3L_5015947_SNP [dm3] 3L_5015947_SNP [dm6]	C	G	1.840e^-6	0.17	INTRON Con
X	3549442	X_3549442_SNP [dm3] X_3655409_SNP [dm6]	A	G	1.868e^-6	0.17	INTRON AstA-R1
2R	10543130	2R_10543130_SNP [dm3] 2R_14655625_SNP [dm6]	C	T	1.880e^-6	0.17	INTERGENIC
X	3549498	X_3549498_SNP [dm3] X_3655465_SNP [dm6]	A	T	1.898e^-6	0.17	INTRON AstA-R1
2L	7900697	2L_7900697_SNP [dm3] 2L_7900697_SNP [dm6]	T	A	2.000e^-6	0.171	INTRON Snoo
3L	11624009	3L_11624009_SNP [dm3] 3L_11630909_SNP [dm6]	G	C	2.197e^-6	0.175	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
X	3549445	X_3549445_SNP [dm3] X_3655412_SNP [dm6]	C	T	2.233e^-6	0.175	INTRON AstA-R1
3L	2619432	3L_2619432_SNP [dm3] 3L_2619432_SNP [dm6]	C	G	2.396e^-6	0.178	INTRON Pxn
2L	12371280	2L_12371280_SNP [dm3] 2L_12371280_SNP [dm6]	T	A	2.471e^-6	0.178	INTRON bru-2
2R	15874892	2R_15874892_SNP [dm3] 2R_19987387_SNP [dm6]	C	T	2.657e^-6	0.178	INTERGENIC
X	3549645	X_3549645_SNP [dm3] X_3655612_SNP [dm6]	C	T	2.723e^-6	0.178	SYNONYMOUS_CODING AstA-R1
X	3549562	X_3549562_SNP [dm3] X_3655529_SNP [dm6]	A	G	2.751e^-6	0.178	INTRON AstA-R1
X	3549510	X_3549510_SNP [dm3] X_3655477_SNP [dm6]	T	G	2.993e^-6	0.187	INTRON AstA-R1
X	3553286	X_3553286_SNP [dm3] X_3659253_SNP [dm6]	C	T	3.482e^-6	0.195	INTRON AstA-R1
2R	15874893	2R_15874893_SNP [dm3] 2R_19987388_SNP [dm6]	G	T	3.498e^-6	0.195	INTERGENIC
X	3549429	X_3549429_SNP [dm3] X_3655396_SNP [dm6]	A	C	3.662e^-6	0.195	INTRON AstA-R1
2L	7900771	2L_7900771_SNP [dm3] 2L_7900771_SNP [dm6]	C	T	3.679e^-6	0.195	INTRON Snoo
2L	7900754	2L_7900754_SNP [dm3] 2L_7900754_SNP [dm6]	C	T	3.723e^-6	0.195	INTRON Snoo
2R	17518196	2R_17518196_SNP [dm3] 2R_21630691_SNP [dm6]	G	A	3.734e^-6	0.195	SYNONYMOUS_CODING mahj DOWNSTREAM CR42547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10543137	2R_10543137_INS [dm3] 2R_14655632_INS [dm6]	T	CGTAATGGCTTATAAAG...	3.916e^-6	0.195	INTERGENIC
2R	16372205	2R_16372205_SNP [dm3] 2R_20484700_SNP [dm6]	A	T	4.115e^-6	0.195	INTERGENIC
2R	17518982	2R_17518982_SNP [dm3] 2R_21631477_SNP [dm6]	C	A	4.121e^-6	0.195	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	2951290	3L_2951290_SNP [dm3] 3L_2951290_SNP [dm6]	T	C	4.286e^-6	0.195	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
2R	15874896	2R_15874896_SNP [dm3] 2R_19987391_SNP [dm6]	A	G	4.329e^-6	0.195	INTERGENIC
X	3550126	X_3550126_SNP [dm3] X_3656093_SNP [dm6]	T	C	4.459e^-6	0.195	INTRON AstA-R1
X	3549542	X_3549542_SNP [dm3] X_3655509_SNP [dm6]	T	A	4.563e^-6	0.195	INTRON AstA-R1
X	3549430	X_3549430_SNP [dm3] X_3655397_SNP [dm6]	G	A	4.663e^-6	0.195	INTRON AstA-R1
X	3549987	X_3549987_SNP [dm3] X_3655954_SNP [dm6]	C	T	4.681e^-6	0.195	INTRON AstA-R1
2R	9743021	2R_9743021_SNP [dm3] 2R_13855516_SNP [dm6]	G	A	5.090e^-6	0.208	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3553170	X_3553170_SNP [dm3] X_3659137_SNP [dm6]	A	G	6.089e^-6	0.239	INTRON AstA-R1
2L	7900646	2L_7900646_SNP [dm3] 2L_7900646_SNP [dm6]	G	C	6.171e^-6	0.239	INTRON Snoo
2L	5509962	2L_5509962_SNP [dm3] 2L_5509962_SNP [dm6]	C	T	6.293e^-6	0.239	INTERGENIC
2R	15874807	2R_15874807_SNP [dm3] 2R_19987302_SNP [dm6]	T	C	6.383e^-6	0.239	INTERGENIC
X	3553282	X_3553282_SNP [dm3] X_3659249_SNP [dm6]	C	A	7.345e^-6	0.263	INTRON AstA-R1
2L	7900689	2L_7900689_SNP [dm3] 2L_7900689_SNP [dm6]	A	G	7.559e^-6	0.263	INTRON Snoo
2L	7900660	2L_7900660_SNP [dm3] 2L_7900660_SNP [dm6]	T	A	7.575e^-6	0.263	INTRON Snoo
2R	13765956	2R_13765956_SNP [dm3] 2R_17878451_SNP [dm6]	A	C	8.108e^-6	0.263	SYNONYMOUS_CODING CG30325 INTRON Elk
X	3550284	X_3550284_SNP [dm3] X_3656251_SNP [dm6]	T	A	8.134e^-6	0.263	INTRON AstA-R1
3L	8138174	3L_8138174_SNP [dm3] 3L_8145074_SNP [dm6]	G	A	8.262e^-6	0.263	SYNONYMOUS_CODING CG13676
2R	16946850	2R_16946850_SNP [dm3] 2R_21059345_SNP [dm6]	A	T	8.378e^-6	0.263	UTR_3_PRIME cpa DOWNSTREAM CG15653
2L	6855824	2L_6855824_SNP [dm3] 2L_6855824_SNP [dm6]	G	A	8.563e^-6	0.263	INTRON l_2_k09022
X	3550915	X_3550915_SNP [dm3] X_3656882_SNP [dm6]	A	G	8.592e^-6	0.263	INTRON AstA-R1
X	3550844	X_3550844_SNP [dm3] X_3656811_SNP [dm6]	T	A	8.596e^-6	0.263	SYNONYMOUS_CODING AstA-R1
2R	10543147	2R_10543147_SNP [dm3] 2R_14655642_SNP [dm6]	T	C	8.636e^-6	0.263	INTERGENIC
2R	17519304	2R_17519304_SNP [dm3] 2R_21631799_SNP [dm6]	T	G	8.853e^-6	0.263	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	15946806	3L_15946806_SNP [dm3] 3L_15953706_SNP [dm6]	A	T	9.058e^-6	0.263	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2951858	3L_2951858_SNP [dm3] 3L_2951858_SNP [dm6]	T	A	9.122e^-6	0.263	UPSTREAM CG32846 INTRON Shab
3L	10501139	3L_10501139_SNP [dm3] 3L_10508039_SNP [dm6]	T	A	9.182e^-6	0.263	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17519294	2R_17519294_DEL [dm3] 2R_21631789_DEL [dm6]	AACT	A	9.244e^-6	0.263	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	2951300	3L_2951300_SNP [dm3] 3L_2951300_SNP [dm6]	T	C	9.628e^-6	0.27	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
2R	9743012	2R_9743012_SNP [dm3] 2R_13855507_SNP [dm6]	G	A	1.013e^-5	0.279	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5304490	X_5304490_SNP [dm3] X_5410457_SNP [dm6]	A	G	1.074e^-5	0.287	INTRON NAAT1
X	3549505	X_3549505_DEL [dm3] X_3655472_DEL [dm6]	ATA	A	1.086e^-5	0.287	INTRON AstA-R1
X	3549321	X_3549321_SNP [dm3] X_3655288_SNP [dm6]	A	G	1.086e^-5	0.287	INTRON AstA-R1
3R	18440057	3R_18440057_SNP [dm3] 3R_22614335_SNP [dm6]	T	C	1.117e^-5	0.288	SYNONYMOUS_CODING EF-G2 UPSTREAM CG31156	TF binding site mE1_TFBS_sens
X	7550946	X_7550946_SNP [dm3] X_7656913_SNP [dm6]	T	C	1.135e^-5	0.288	INTRON ct
2L	10742870	2L_10742870_SNP [dm3] 2L_10742870_SNP [dm6]	G	T	1.136e^-5	0.288	SYNONYMOUS_CODING CG6729 DOWNSTREAM mir-4970	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11344044	3L_11344044_SNP [dm3] 3L_11350944_SNP [dm6]	T	C	1.160e^-5	0.29	INTERGENIC
2R	9419430	2R_9419430_INS [dm3] 2R_13531925_INS [dm6]	A	ATATATGG	1.177e^-5	0.29	INTRON Vmat
X	3550897	X_3550897_SNP [dm3] X_3656864_SNP [dm6]	G	A	1.229e^-5	0.291	INTRON AstA-R1
3L	5059777	3L_5059777_SNP [dm3] 3L_5059777_SNP [dm6]	G	A	1.236e^-5	0.291	INTRON Con
2R	15874700	2R_15874700_SNP [dm3] 2R_19987195_SNP [dm6]	G	A	1.249e^-5	0.291	INTERGENIC
3L	11628573	3L_11628573_SNP [dm3] 3L_11635473_SNP [dm6]	C	T	1.257e^-5	0.291	INTRON CG32091
2L	12497910	2L_12497910_SNP [dm3] 2L_12497910_SNP [dm6]	A	C	1.258e^-5	0.291	UPSTREAM t-cup INTRON bun
X	9723916	X_9723916_SNP [dm3] X_9829883_SNP [dm6]	A	G	1.280e^-5	0.291	INTRON CG32698
2R	9743024	2R_9743024_SNP [dm3] 2R_13855519_SNP [dm6]	G	A	1.289e^-5	0.291	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16839686	2L_16839686_SNP [dm3] 2L_16839686_SNP [dm6]	T	C	1.337e^-5	0.299	UPSTREAM SclB INTRON SclB & 1 other
X	3553123	X_3553123_SNP [dm3] X_3659090_SNP [dm6]	A	T	1.494e^-5	0.327	INTRON AstA-R1
X	3591132	X_3591132_SNP [dm3] X_3697099_SNP [dm6]	A	T	1.500e^-5	0.327	INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10543120	2R_10543120_SNP [dm3] 2R_14655615_SNP [dm6]	A	G	1.569e^-5	0.329	INTERGENIC
2R	10006596	2R_10006596_SNP [dm3] 2R_14119091_SNP [dm6]	G	A	1.586e^-5	0.329	INTRON Prosap
2L	6855843	2L_6855843_SNP [dm3] 2L_6855843_SNP [dm6]	A	T	1.599e^-5	0.329	SPLICE_SITE_REGION l_2_k09022 INTRON l_2_k09022
2R	15874827	2R_15874827_SNP [dm3] 2R_19987322_SNP [dm6]	G	A	1.610e^-5	0.329	INTERGENIC
3L	11468406	3L_11468406_SNP [dm3] 3L_11475306_SNP [dm6]	T	A	1.611e^-5	0.329	SYNONYMOUS_CODING Vha16-2
2L	16840859	2L_16840859_SNP [dm3] 2L_16840859_SNP [dm6]	T	C	1.611e^-5	0.329	INTRON SclA & 1 other
3L	15946797	3L_15946797_SNP [dm3] 3L_15953697_SNP [dm6]	T	A	1.693e^-5	0.339	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4034309	2L_4034309_SNP [dm3] 2L_4034309_SNP [dm6]	A	G	1.697e^-5	0.339	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3548922	X_3548922_SNP [dm3] X_3654889_SNP [dm6]	G	C	1.759e^-5	0.341	INTRON AstA-R1
2R	15874842	2R_15874842_SNP [dm3] 2R_19987337_SNP [dm6]	T	A	1.767e^-5	0.341	INTERGENIC
2R	15121278	2R_15121278_SNP [dm3] 2R_19233773_SNP [dm6]	C	A	1.783e^-5	0.341	INTRON cora
3L	11343008	3L_11343008_SNP [dm3] 3L_11349908_SNP [dm6]	A	G	1.813e^-5	0.341	UPSTREAM CR45251 INTERGENIC
3L	5059794	3L_5059794_SNP [dm3] 3L_5059794_SNP [dm6]	G	T	1.818e^-5	0.341	INTRON Con
2R	9419428	2R_9419428_SNP [dm3] 2R_13531923_SNP [dm6]	T	A	1.833e^-5	0.341	INTRON Vmat
3L	15946793	3L_15946793_SNP [dm3] 3L_15953693_SNP [dm6]	T	A	1.841e^-5	0.341	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3549735	X_3549735_SNP [dm3] X_3655702_SNP [dm6]	G	A	1.854e^-5	0.341	SYNONYMOUS_CODING AstA-R1
2R	6665648	2R_6665648_SNP [dm3] 2R_10778143_SNP [dm6]	G	A	1.877e^-5	0.342	INTRON CG33144
3R	17828427	3R_17828427_SNP [dm3] 3R_22002705_SNP [dm6]	T	G	1.896e^-5	0.342	INTRON Eip93F
3L	16754647	3L_16754647_SNP [dm3] 3L_16761547_SNP [dm6]	T	A	1.920e^-5	0.343	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	15946667	3L_15946667_SNP [dm3] 3L_15953567_SNP [dm6]	T	A	2.000e^-5	0.354	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	15294646	X_15294646_SNP [dm3] X_15400613_SNP [dm6]	T	C	2.102e^-5	0.366	INTRON Cngl
3L	10641522	3L_10641522_SNP [dm3] 3L_10648422_SNP [dm6]	A	G	2.129e^-5	0.366	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2R	15859430	2R_15859430_SNP [dm3] 2R_19971925_SNP [dm6]	C	T	2.142e^-5	0.366	INTERGENIC
3L	4427827	3L_4427827_SNP [dm3] 3L_4427827_SNP [dm6]	T	G	2.144e^-5	0.366	INTERGENIC
2R	15121245	2R_15121245_SNP [dm3] 2R_19233740_SNP [dm6]	G	A	2.192e^-5	0.37	INTRON cora
2R	18986526	2R_18986526_SNP [dm3] 2R_23099003_SNP [dm6]	C	A	2.220e^-5	0.372	INTERGENIC
2R	17519305	2R_17519305_SNP [dm3] 2R_21631800_SNP [dm6]	G	A	2.248e^-5	0.373	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	2537459	3L_2537459_SNP [dm3] 3L_2537459_SNP [dm6]	A	G	2.317e^-5	0.381	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
2R	6657428	2R_6657428_SNP [dm3] 2R_10769923_SNP [dm6]	C	T	2.411e^-5	0.385	INTRON CG33144
3L	15946656	3L_15946656_SNP [dm3] 3L_15953556_SNP [dm6]	A	C	2.425e^-5	0.385	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	13792090	X_13792090_SNP [dm3] X_13898057_SNP [dm6]	A	C	2.444e^-5	0.385	INTRON mamo
3L	3055792	3L_3055792_DEL [dm3] 3L_3055792_DEL [dm6]	GAAAAACGTTACTAATTG...	G	2.455e^-5	0.385	UTR_3_PRIME CG16753 DOWNSTREAM CG1271 & 1 other
X	13792092	X_13792092_SNP [dm3] X_13898059_SNP [dm6]	G	T	2.459e^-5	0.385	INTRON mamo
3L	15946654	3L_15946654_SNP [dm3] 3L_15953554_SNP [dm6]	G	C	2.460e^-5	0.385	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16765224	3L_16765224_SNP [dm3] 3L_16772124_SNP [dm6]	C	T	2.525e^-5	0.389	INTRON Nrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3552606	X_3552606_SNP [dm3] X_3658573_SNP [dm6]	G	A	2.530e^-5	0.389	INTRON AstA-R1
2L	10743287	2L_10743287_SNP [dm3] 2L_10743287_SNP [dm6]	A	C	2.580e^-5	0.393	SYNONYMOUS_CODING CG6729 DOWNSTREAM CG17124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17519266	2R_17519266_SNP [dm3] 2R_21631761_SNP [dm6]	A	C	2.600e^-5	0.393	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2R	13592045	2R_13592045_SNP [dm3] 2R_17704540_SNP [dm6]	C	T	2.638e^-5	0.395	SYNONYMOUS_CODING CG6424
3L	15946663	3L_15946663_SNP [dm3] 3L_15953563_SNP [dm6]	A	G	2.672e^-5	0.395	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5468206	3L_5468206_SNP [dm3] 3L_5475106_SNP [dm6]	C	A	2.678e^-5	0.395	INTERGENIC
3L	3934071	3L_3934071_SNP [dm3] 3L_3934071_SNP [dm6]	G	A	2.693e^-5	0.395	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3L	16454708	3L_16454708_DEL [dm3] 3L_16461608_DEL [dm6]	TT	T	2.734e^-5	0.398	INTRON CG33158
2L	13874557	2L_13874557_SNP [dm3] 2L_13874557_SNP [dm6]	A	G	2.818e^-5	0.402	INTRON CenG1A
3L	2951276	3L_2951276_SNP [dm3] 3L_2951276_SNP [dm6]	A	G	2.825e^-5	0.402	SYNONYMOUS_CODING CG32846 INTRON Shab
2R	14025474	2R_14025474_SNP [dm3] 2R_18137969_SNP [dm6]	T	C	2.834e^-5	0.402	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11620590	2R_11620590_SNP [dm3] 2R_15733085_SNP [dm6]	T	A	2.852e^-5	0.402	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3550619	X_3550619_SNP [dm3] X_3656586_SNP [dm6]	T	G	2.891e^-5	0.403	INTRON AstA-R1
X	3551043	X_3551043_SNP [dm3] X_3657010_SNP [dm6]	T	A	2.916e^-5	0.403	INTRON AstA-R1
2L	11491024	2L_11491024_SNP [dm3] 2L_11491024_SNP [dm6]	G	A	2.923e^-5	0.403	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24673940	3R_24673940_SNP [dm3] 3R_28848218_SNP [dm6]	C	T	3.033e^-5	0.415	INTRON spg
3L	785166	3L_785166_SNP [dm3] 3L_785166_SNP [dm6]	A	C	3.103e^-5	0.422	INTERGENIC
2L	7900636	2L_7900636_SNP [dm3] 2L_7900636_SNP [dm6]	G	T	3.202e^-5	0.428	INTRON Snoo
3L	2951334	3L_2951334_SNP [dm3] 3L_2951334_SNP [dm6]	A	G	3.211e^-5	0.428	SYNONYMOUS_CODING CG32846 INTRON Shab
3L	15946694	3L_15946694_SNP [dm3] 3L_15953594_SNP [dm6]	A	G	3.233e^-5	0.428	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3551056	X_3551056_SNP [dm3] X_3657023_SNP [dm6]	C	T	3.259e^-5	0.428	INTRON AstA-R1
3L	15946673	3L_15946673_SNP [dm3] 3L_15953573_SNP [dm6]	C	T	3.272e^-5	0.428	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	161811	3L_161811_DEL [dm3] 3L_161811_DEL [dm6]	AAGATCTGCGACAACTGTGA...	A	3.320e^-5	0.428	INTRON p130CAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	15874840	2R_15874840_SNP [dm3] 2R_19987335_SNP [dm6]	C	T	3.331e^-5	0.428	INTERGENIC
3R	5753146	3R_5753146_SNP [dm3] 3R_9927424_SNP [dm6]	C	G	3.414e^-5	0.428	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11283476	3L_11283476_SNP [dm3] 3L_11290376_SNP [dm6]	C	A	3.434e^-5	0.428	INTRON CG6175
2R	10543163	2R_10543163_DEL [dm3] 2R_14655658_DEL [dm6]	ATTTAAA	A	3.448e^-5	0.428	INTERGENIC
2R	17517724	2R_17517724_SNP [dm3] 2R_21630219_SNP [dm6]	T	A	3.457e^-5	0.428	INTRON mahj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14659966	X_14659966_SNP [dm3] X_14765933_SNP [dm6]	T	G	3.457e^-5	0.428	UPSTREAM CG15890 INTERGENIC
3L	2951920	3L_2951920_INS [dm3] 3L_2951920_INS [dm6]	T	TAT	3.468e^-5	0.428	UPSTREAM CG32846 INTRON Shab
3L	15169204	3L_15169204_SNP [dm3] 3L_15176104_SNP [dm6]	A	C	3.471e^-5	0.428	INTERGENIC
3R	5753159	3R_5753159_SNP [dm3] 3R_9927437_SNP [dm6]	C	T	3.562e^-5	0.437	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11424852	3L_11424852_SNP [dm3] 3L_11431752_SNP [dm6]	C	T	3.635e^-5	0.442	INTERGENIC
2R	16730127	2R_16730127_SNP [dm3] 2R_20842622_SNP [dm6]	G	A	3.675e^-5	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1838806	2L_1838806_SNP [dm3] 2L_1838806_SNP [dm6]	T	A	3.678e^-5	0.442	DOWNSTREAM CR44073 INTRON wry
3R	6851832	3R_6851832_SNP [dm3] 3R_11026110_SNP [dm6]	C	T	3.742e^-5	0.447	INTRON CG34114
3L	15946677	3L_15946677_SNP [dm3] 3L_15953577_SNP [dm6]	C	T	3.770e^-5	0.448	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17519052	2R_17519052_SNP [dm3] 2R_21631547_SNP [dm6]	T	A	3.796e^-5	0.448	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2R	11444858	2R_11444858_SNP [dm3] 2R_15557353_SNP [dm6]	A	G	3.822e^-5	0.448	UPSTREAM CG12963 INTRON CG12963
3L	3055884	3L_3055884_SNP [dm3] 3L_3055884_SNP [dm6]	C	T	3.858e^-5	0.449	DOWNSTREAM CG1271 & 2 others INTERGENIC
3R	3347536	3R_3347536_SNP [dm3] 3R_7521814_SNP [dm6]	T	G	3.912e^-5	0.45	INTRON alpha-Est7	TF binding site mE1_TFBS_cad
3L	161739	3L_161739_DEL [dm3] 3L_161739_DEL [dm6]	CCTCCAGA	C	3.930e^-5	0.45	INTRON p130CAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11443563	2R_11443563_SNP [dm3] 2R_15556058_SNP [dm6]	G	T	3.937e^-5	0.45	UPSTREAM CG12963 INTRON CG12963
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	4.008e^-5	0.456	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
2L	10735876	2L_10735876_SNP [dm3] 2L_10735876_SNP [dm6]	G	C	4.052e^-5	0.458	NON_SYNONYMOUS_CODING Nup107 DOWNSTREAM Vha16-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25210861	3R_25210861_DEL [dm3] 3R_29385139_DEL [dm6]	TAT	T	4.102e^-5	0.458	INTRON Ptp99A
2R	9419434	2R_9419434_SNP [dm3] 2R_13531929_SNP [dm6]	A	G	4.114e^-5	0.458	INTRON Vmat
X	3553645	X_3553645_SNP [dm3] X_3659612_SNP [dm6]	T	C	4.126e^-5	0.458	INTRON AstA-R1
3L	4477542	3L_4477542_SNP [dm3] 3L_4477542_SNP [dm6]	C	T	4.217e^-5	0.462	INTERGENIC
3L	4446137	3L_4446137_SNP [dm3] 3L_4446137_SNP [dm6]	A	T	4.221e^-5	0.462	UPSTREAM CG12607 EXON CR45739
3L	16052911	3L_16052911_SNP [dm3] 3L_16059811_SNP [dm6]	C	T	4.273e^-5	0.462	INTRON Mbs
X	15294622	X_15294622_SNP [dm3] X_15400589_SNP [dm6]	C	A	4.314e^-5	0.462	INTRON Cngl
X	15294628	X_15294628_SNP [dm3] X_15400595_SNP [dm6]	A	G	4.314e^-5	0.462	INTRON Cngl
X	3550275	X_3550275_SNP [dm3] X_3656242_SNP [dm6]	C	T	4.315e^-5	0.462	INTRON AstA-R1
2R	15874706	2R_15874706_INS [dm3] 2R_19987201_INS [dm6]	C	CTGCC	4.347e^-5	0.463	INTERGENIC
3L	2951363	3L_2951363_SNP [dm3] 3L_2951363_SNP [dm6]	A	T	4.401e^-5	0.466	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
X	12632141	X_12632141_SNP [dm3] X_12738108_SNP [dm6]	A	C	4.427e^-5	0.467	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11626442	3L_11626442_SNP [dm3] 3L_11633342_SNP [dm6]	C	T	4.568e^-5	0.474	UPSTREAM CR45158 INTRON CG32091
X	15294627	X_15294627_SNP [dm3] X_15400594_SNP [dm6]	T	C	4.571e^-5	0.474	INTRON Cngl
3R	5753158	3R_5753158_SNP [dm3] 3R_9927436_SNP [dm6]	C	T	4.577e^-5	0.474	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9743018	2R_9743018_SNP [dm3] 2R_13855513_SNP [dm6]	A	T	4.623e^-5	0.474	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13919531	X_13919531_INS [dm3] X_14025498_INS [dm6]	G	GAG	4.625e^-5	0.474	UPSTREAM tRNA:S774:12Ec DOWNSTREAM tRNA:S7:12Ed INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	20065395	2L_20065395_SNP [dm3] 2L_20065395_SNP [dm6]	T	G	4.687e^-5	0.478	SYNONYMOUS_CODING vls UPSTREAM bwa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5561668	2L_5561668_SNP [dm3] 2L_5561668_SNP [dm6]	A	G	4.767e^-5	0.481	INTRON GluRIIB
2R	13740968	2R_13740968_SNP [dm3] 2R_17853463_SNP [dm6]	G	A	4.785e^-5	0.481	SYNONYMOUS_CODING CG30323 INTRON olf186-F
3R	7456702	3R_7456702_SNP [dm3] 3R_11630980_SNP [dm6]	A	G	4.810e^-5	0.481	SYNONYMOUS_CODING CG14712	TF binding site mE1_TFBS_sens
3L	785186	3L_785186_SNP [dm3] 3L_785186_SNP [dm6]	A	C	4.826e^-5	0.481	INTERGENIC
X	3569413	X_3569413_SNP [dm3] X_3675380_SNP [dm6]	T	C	4.897e^-5	0.486	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17564711	X_17564711_DEL [dm3] X_17670678_DEL [dm6]	CATGC	C	4.945e^-5	0.487	INTRON CG12990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2952203	3L_2952203_SNP [dm3] 3L_2952203_SNP [dm6]	T	A	4.961e^-5	0.487	UPSTREAM CG32846 INTRON Shab	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11193200	3L_11193200_DEL [dm3] 3L_11200100_DEL [dm6]	ACATTGACA	A	5.125e^-5	0.501	INTRON Plod & 1 other
2R	19490624	2R_19490624_SNP [dm3] 2R_23603101_SNP [dm6]	G	A	5.172e^-5	0.503	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11470435	2R_11470435_DEL [dm3] 2R_15582930_DEL [dm6]	CGTTTGAGC	C	5.266e^-5	0.505	INTERGENIC
2R	15874839	2R_15874839_SNP [dm3] 2R_19987334_SNP [dm6]	T	C	5.283e^-5	0.505	INTERGENIC
2R	11443414	2R_11443414_SNP [dm3] 2R_15555909_SNP [dm6]	T	C	5.298e^-5	0.505	UPSTREAM CG12963 INTRON CG12963
X	3550142	X_3550142_DEL [dm3] X_3656109_DEL [dm6]	GTAGG	G	5.299e^-5	0.505	INTRON AstA-R1
X	940644	X_940644_SNP [dm3] X_1046611_SNP [dm6]	C	T	5.350e^-5	0.505	UPSTREAM CR44779 DOWNSTREAM su_w[a]_ INTRON CG42259	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10736058	2R_10736058_SNP [dm3] 2R_14848553_SNP [dm6]	C	T	5.420e^-5	0.505	UPSTREAM CG10209 DOWNSTREAM SMC2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10736102	2L_10736102_SNP [dm3] 2L_10736102_SNP [dm6]	T	G	5.474e^-5	0.505	UPSTREAM Nup107 DOWNSTREAM Vha16-5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	1973394	3L_1973394_SNP [dm3] 3L_1973394_SNP [dm6]	A	G	5.489e^-5	0.505	SYNONYMOUS_CODING CG1139
2L	5509959	2L_5509959_SNP [dm3] 2L_5509959_SNP [dm6]	T	C	5.535e^-5	0.505	INTERGENIC
2R	6249919	2R_6249919_SNP [dm3] 2R_10362414_SNP [dm6]	C	G	5.545e^-5	0.505	NON_SYNONYMOUS_CODING Gr47a INTRON CG42732
3L	15946759	3L_15946759_SNP [dm3] 3L_15953659_SNP [dm6]	C	T	5.559e^-5	0.505	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16935470	2L_16935470_INS [dm3] 2L_16935470_INS [dm6]	A	AA	5.566e^-5	0.505	INTERGENIC
X	3550875	X_3550875_SNP [dm3] X_3656842_SNP [dm6]	A	G	5.571e^-5	0.505	INTRON AstA-R1
X	13792134	X_13792134_SNP [dm3] X_13898101_SNP [dm6]	T	G	5.573e^-5	0.505	INTRON mamo
3L	179936	3L_179936_SNP [dm3] 3L_179936_SNP [dm6]	C	A	5.612e^-5	0.505	UTR_5_PRIME CG13875 UPSTREAM Vdup1 & 1 other	TF binding site mE1_TFBS_Trl
3L	2328649	3L_2328649_SNP [dm3] 3L_2328649_SNP [dm6]	T	C	5.635e^-5	0.505	INTRON MsR1
3L	17020436	3L_17020436_SNP [dm3] 3L_17027336_SNP [dm6]	T	A	5.717e^-5	0.505	UPSTREAM CG7730 DOWNSTREAM Fit2 INTERGENIC
2R	18741631	2R_18741631_INS [dm3] 2R_22854108_INS [dm6]	G	GAT	5.718e^-5	0.505	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	675504	3L_675504_SNP [dm3] 3L_675504_SNP [dm6]	G	A	5.719e^-5	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18470299	3L_18470299_SNP [dm3] 3L_18477199_SNP [dm6]	A	T	5.739e^-5	0.505	INTERGENIC
2R	19654144	2R_19654144_SNP [dm3] 2R_23766621_SNP [dm6]	T	C	5.778e^-5	0.506	INTRON CG9850
2L	13921302	2L_13921302_DEL [dm3] 2L_13921302_DEL [dm6]	TGT	T	5.809e^-5	0.507	UTR_3_PRIME CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13902937	2L_13902937_SNP [dm3] 2L_13902937_SNP [dm6]	A	T	5.843e^-5	0.507	SYNONYMOUS_CODING Smg5	TF binding site mE1_TFBS_sens
3R	26057932	3R_26057932_SNP [dm3] 3R_30232210_SNP [dm6]	G	A	5.889e^-5	0.509	INTERGENIC
2L	14188584	2L_14188584_SNP [dm3] 2L_14188584_SNP [dm6]	T	C	5.914e^-5	0.509	INTRON Dyrk2
X	3549838	X_3549838_DEL [dm3] X_3655805_DEL [dm6]	ATA	A	5.987e^-5	0.511	INTRON AstA-R1
2R	14025462	2R_14025462_SNP [dm3] 2R_18137957_SNP [dm6]	T	C	5.999e^-5	0.511	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19137292	2R_19137292_SNP [dm3] 2R_23249769_SNP [dm6]	A	G	6.086e^-5	0.517	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11443268	2R_11443268_SNP [dm3] 2R_15555763_SNP [dm6]	C	T	6.151e^-5	0.52	UTR_5_PRIME CG12963 UPSTREAM CG12963 INTRON CG12963
2L	16981704	2L_16981704_SNP [dm3] 2L_16981704_SNP [dm6]	G	C	6.267e^-5	0.526	UPSTREAM CR44408 DOWNSTREAM CG44406 INTRON beat-IIIb
3L	2225836	3L_2225836_SNP [dm3] 3L_2225836_SNP [dm6]	T	G	6.281e^-5	0.526	INTERGENIC
2L	13005625	2L_13005625_SNP [dm3] 2L_13005625_SNP [dm6]	G	A	6.359e^-5	0.528	SYNONYMOUS_CODING Tor
2R	18741642	2R_18741642_SNP [dm3] 2R_22854119_SNP [dm6]	G	C	6.380e^-5	0.528	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	3552742	X_3552742_SNP [dm3] X_3658709_SNP [dm6]	T	C	6.392e^-5	0.528	INTRON AstA-R1
2R	19283102	2R_19283102_SNP [dm3] 2R_23395579_SNP [dm6]	A	G	6.479e^-5	0.533	UPSTREAM CG3530 INTRON CG3530	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15684524	3L_15684524_SNP [dm3] 3L_15691424_SNP [dm6]	A	T	6.511e^-5	0.533	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	5753004	3R_5753004_SNP [dm3] 3R_9927282_SNP [dm6]	T	C	6.547e^-5	0.534	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3593479	X_3593479_SNP [dm3] X_3699446_SNP [dm6]	G	A	6.655e^-5	0.534	SYNONYMOUS_CODING Mnt
2L	11422366	2L_11422366_SNP [dm3] 2L_11422366_SNP [dm6]	G	A	6.684e^-5	0.534	INTERGENIC
3R	5730380	3R_5730380_SNP [dm3] 3R_9904658_SNP [dm6]	A	C	6.735e^-5	0.534	INTRON Glut4EF
X	3550986	X_3550986_SNP [dm3] X_3656953_SNP [dm6]	G	A	6.739e^-5	0.534	INTRON AstA-R1
2R	14565483	2R_14565483_DEL [dm3] 2R_18677978_DEL [dm6]	AGT	A	6.739e^-5	0.534	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	10009025	3L_10009025_SNP [dm3] 3L_10015925_SNP [dm6]	A	G	6.766e^-5	0.534	INTRON dpr6
3L	1145040	3L_1145040_SNP [dm3] 3L_1145040_SNP [dm6]	C	A	6.776e^-5	0.534	INTRON bab2
3L	11277449	3L_11277449_SNP [dm3] 3L_11284349_SNP [dm6]	G	A	6.810e^-5	0.534	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2541586	3L_2541586_SNP [dm3] 3L_2541586_SNP [dm6]	T	C	6.810e^-5	0.534	INTRON Spn
X	4656193	X_4656193_SNP [dm3] X_4762160_SNP [dm6]	C	T	6.844e^-5	0.535	INTERGENIC
3L	15946798	3L_15946798_SNP [dm3] 3L_15953698_SNP [dm6]	A	G	6.938e^-5	0.54	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6843102	3R_6843102_SNP [dm3] 3R_11017380_SNP [dm6]	T	A	6.993e^-5	0.54	INTRON CG34114
2R	10744477	2R_10744477_SNP [dm3] 2R_14856972_SNP [dm6]	G	A	7.000e^-5	0.54	SYNONYMOUS_CODING HPS1 DOWNSTREAM CG33506	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10028423	2R_10028423_SNP [dm3] 2R_14140918_SNP [dm6]	A	G	7.119e^-5	0.545	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	11715898	3L_11715898_SNP [dm3] 3L_11722798_SNP [dm6]	A	T	7.160e^-5	0.545	SYNONYMOUS_CODING Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11491033	2L_11491033_SNP [dm3] 2L_11491033_SNP [dm6]	A	T	7.245e^-5	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3550616	X_3550616_SNP [dm3] X_3656583_SNP [dm6]	A	T	7.249e^-5	0.545	INTRON AstA-R1
2L	7107060	2L_7107060_SNP [dm3] 2L_7107060_SNP [dm6]	A	T	7.313e^-5	0.545	INTRON Pvf3
2R	9203094	2R_9203094_SNP [dm3] 2R_13315589_SNP [dm6]	T	C	7.349e^-5	0.545	INTERGENIC
X	3551007	X_3551007_SNP [dm3] X_3656974_SNP [dm6]	T	G	7.371e^-5	0.545	INTRON AstA-R1
3L	4425741	3L_4425741_SNP [dm3] 3L_4425741_SNP [dm6]	T	C	7.429e^-5	0.545	SYNONYMOUS_CODING CG15020
2L	14386020	2L_14386020_SNP [dm3] 2L_14386020_SNP [dm6]	C	T	7.445e^-5	0.545	INTERGENIC
2R	11443587	2R_11443587_SNP [dm3] 2R_15556082_SNP [dm6]	C	G	7.461e^-5	0.545	UPSTREAM CG12963 INTRON CG12963
3L	15684567	3L_15684567_DEL [dm3] 3L_15691467_DEL [dm6]	TAATGGTATATTATTCTTTA...	T	7.505e^-5	0.545	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	7107070	2L_7107070_SNP [dm3] 2L_7107070_SNP [dm6]	T	C	7.510e^-5	0.545	INTRON Pvf3
2R	19777913	2R_19777913_SNP [dm3] 2R_23890390_SNP [dm6]	G	A	7.529e^-5	0.545	UPSTREAM DNA-ligI & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	17808567	2R_17808567_SNP [dm3] 2R_21921062_SNP [dm6]	C	T	7.545e^-5	0.545	INTRON Fili	TF binding site mE1_TFBS_inv
3L	10192797	3L_10192797_SNP [dm3] 3L_10199697_SNP [dm6]	C	G	7.554e^-5	0.545	INTRON ect
3L	11283475	3L_11283475_SNP [dm3] 3L_11290375_SNP [dm6]	T	G	7.556e^-5	0.545	INTRON CG6175
2L	16939090	2L_16939090_SNP [dm3] 2L_16939090_SNP [dm6]	G	T	7.563e^-5	0.545	INTERGENIC
3L	11567875	3L_11567875_INS [dm3] 3L_11574775_INS [dm6]	T	TCTTTT	7.625e^-5	0.545	UTR_3_PRIME CG33489 UPSTREAM CG33490
2R	15874733	2R_15874733_SNP [dm3] 2R_19987228_SNP [dm6]	A	C	7.645e^-5	0.545	INTERGENIC
2L	7107061	2L_7107061_SNP [dm3] 2L_7107061_SNP [dm6]	C	A	7.691e^-5	0.545	INTRON Pvf3
2R	11629497	2R_11629497_SNP [dm3] 2R_15741992_SNP [dm6]	T	C	7.692e^-5	0.545	INTRON CG30089
3R	12134494	3R_12134494_SNP [dm3] 3R_16308772_SNP [dm6]	G	T	7.720e^-5	0.545	DOWNSTREAM Zip89B INTERGENIC
3L	4351439	3L_4351439_SNP [dm3] 3L_4351439_SNP [dm6]	G	T	7.761e^-5	0.545	INTRON Cip4
2L	7900233	2L_7900233_SNP [dm3] 2L_7900233_SNP [dm6]	C	T	7.788e^-5	0.545	INTRON Snoo
X	938024	X_938024_SNP [dm3] X_1043991_SNP [dm6]	T	G	7.790e^-5	0.545	SYNONYMOUS_CODING su_w[a]_ UTR_3_PRIME su_w[a]_
3L	1034100	3L_1034100_DEL [dm3] 3L_1034100_DEL [dm6]	TT	T	7.943e^-5	0.553	UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2L	6843849	2L_6843849_SNP [dm3] 2L_6843849_SNP [dm6]	C	G	7.968e^-5	0.553	INTERGENIC
2L	7898830	2L_7898830_SNP [dm3] 2L_7898830_SNP [dm6]	A	C	8.005e^-5	0.554	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	1576286	2R_1576286_SNP [dm3] 2R_5688781_SNP [dm6]	A	G	8.185e^-5	0.562	INTRON scaf
X	14659964	X_14659964_SNP [dm3] X_14765931_SNP [dm6]	A	G	8.185e^-5	0.562	UPSTREAM CG15890 INTERGENIC
3L	13080439	3L_13080439_SNP [dm3] 3L_13087339_SNP [dm6]	C	T	8.243e^-5	0.564	UPSTREAM CR45749 & 1 other INTERGENIC
2R	18741662	2R_18741662_SNP [dm3] 2R_22854139_SNP [dm6]	A	G	8.375e^-5	0.565	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7898570	2L_7898570_SNP [dm3] 2L_7898570_SNP [dm6]	T	C	8.385e^-5	0.565	INTRON Snoo
2L	6843850	2L_6843850_SNP [dm3] 2L_6843850_SNP [dm6]	C	A	8.389e^-5	0.565	INTERGENIC
3R	5765567	3R_5765567_SNP [dm3] 3R_9939845_SNP [dm6]	T	A	8.404e^-5	0.565	INTRON Glut4EF
2R	11443576	2R_11443576_SNP [dm3] 2R_15556071_SNP [dm6]	T	G	8.407e^-5	0.565	UPSTREAM CG12963 INTRON CG12963
X	16402988	X_16402988_SNP [dm3] X_16508955_SNP [dm6]	T	C	8.465e^-5	0.565	INTRON para
2L	20131618	2L_20131618_SNP [dm3] 2L_20131618_SNP [dm6]	C	T	8.490e^-5	0.565	INTERGENIC
2R	11443551	2R_11443551_SNP [dm3] 2R_15556046_SNP [dm6]	C	A	8.568e^-5	0.565	UPSTREAM CG12963 INTRON CG12963
2R	11443573	2R_11443573_SNP [dm3] 2R_15556068_SNP [dm6]	A	G	8.568e^-5	0.565	UPSTREAM CG12963 INTRON CG12963
2R	11443608	2R_11443608_SNP [dm3] 2R_15556103_SNP [dm6]	C	G	8.568e^-5	0.565	UPSTREAM CG12963 INTRON CG12963
3L	179935	3L_179935_SNP [dm3] 3L_179935_SNP [dm6]	T	A	8.628e^-5	0.565	UTR_5_PRIME CG13875 UPSTREAM Vdup1 & 1 other	TF binding site mE1_TFBS_Trl
3L	10170820	3L_10170820_SNP [dm3] 3L_10177720_SNP [dm6]	C	A	8.647e^-5	0.565	INTRON dpr10
X	912146	X_912146_INS [dm3] X_1018113_INS [dm6]	G	GCATTAGCATACACTGTGTG...	8.685e^-5	0.565	INTRON su_w[a]_ & 1 other
2L	10601715	2L_10601715_SNP [dm3] 2L_10601715_SNP [dm6]	C	A	8.697e^-5	0.565	INTRON Trim9
3R	13271579	3R_13271579_SNP [dm3] 3R_17445857_SNP [dm6]	C	A	8.711e^-5	0.565	DOWNSTREAM Eh INTRON CG5873
2R	17623729	2R_17623729_SNP [dm3] 2R_21736224_SNP [dm6]	G	T	8.838e^-5	0.572	INTERGENIC
3L	17267952	3L_17267952_SNP [dm3] 3L_17274852_SNP [dm6]	T	C	8.889e^-5	0.572	DOWNSTREAM CR45436 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9929648	2L_9929648_SNP [dm3] 2L_9929648_SNP [dm6]	C	T	8.906e^-5	0.572	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10736136	2R_10736136_SNP [dm3] 2R_14848631_SNP [dm6]	T	A	8.976e^-5	0.575	UTR_3_PRIME SMC2 UPSTREAM CG10209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10006471	2R_10006471_SNP [dm3] 2R_14118966_SNP [dm6]	C	A	9.106e^-5	0.581	INTRON Prosap
2L	20388444	2L_20388444_SNP [dm3] 2L_20388444_SNP [dm6]	T	G	9.163e^-5	0.582	INTRON CG10947
3R	25648095	3R_25648095_SNP [dm3] 3R_29822373_SNP [dm6]	C	T	9.197e^-5	0.582	UTR_5_PRIME neo
X	3551254	X_3551254_SNP [dm3] X_3657221_SNP [dm6]	T	A	9.218e^-5	0.582	INTRON AstA-R1
3R	23793650	3R_23793650_SNP [dm3] 3R_27967928_SNP [dm6]	T	A	9.287e^-5	0.585	DOWNSTREAM CG4849 INTRON betaTub97EF
3R	14063417	3R_14063417_SNP [dm3] 3R_18237695_SNP [dm6]	G	A	9.426e^-5	0.59	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17381353	X_17381353_SNP [dm3] X_17487320_SNP [dm6]	T	G	9.444e^-5	0.59	INTRON CG43658	TF binding site mE1_TFBS_inv
2L	4194512	2L_4194512_SNP [dm3] 2L_4194512_SNP [dm6]	A	C	9.552e^-5	0.594	INTRON CG3714
3R	24153789	3R_24153789_SNP [dm3] 3R_28328067_SNP [dm6]	T	A	9.569e^-5	0.594	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_Trl
2R	14023584	2R_14023584_SNP [dm3] 2R_18136079_SNP [dm6]	G	C	9.631e^-5	0.596	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13820357	2L_13820357_SNP [dm3] 2L_13820357_SNP [dm6]	C	T	9.722e^-5	0.598	UPSTREAM b DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	10792948	2R_10792948_SNP [dm3] 2R_14905443_SNP [dm6]	A	G	9.749e^-5	0.598	SYNONYMOUS_CODING CG10249	TF binding site mE1_TFBS_chinmo
3R	25648147	3R_25648147_SNP [dm3] 3R_29822425_SNP [dm6]	G	T	9.750e^-5	0.598	NON_SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_chinmo
2R	17808600	2R_17808600_SNP [dm3] 2R_21921095_SNP [dm6]	G	A	9.817e^-5	0.6	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4936363	X_4936363_SNP [dm3] X_5042330_SNP [dm6]	A	T	9.873e^-5	0.601	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	11443232	2R_11443232_SNP [dm3] 2R_15555727_SNP [dm6]	A	C	9.914e^-5	0.602	UPSTREAM CG12963 INTRON CG12963
2R	4131768	2R_4131768_SNP [dm3] 2R_8244263_SNP [dm6]	A	C	9.948e^-5	0.602	UPSTREAM CR44445 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
3R	26082533	3R_26082533_SNP [dm3] 3R_30256811_SNP [dm6]	C	T	1.001e^-4	0.604	INTERGENIC
2L	7107044	2L_7107044_SNP [dm3] 2L_7107044_SNP [dm6]	T	A	1.010e^-4	0.607	INTRON Pvf3
2R	20478955	2R_20478955_SNP [dm3] 2R_24591432_SNP [dm6]	G	T	1.014e^-4	0.607	INTRON pio	TF binding site BDTNP1_TFBS_prd
3L	5059900	3L_5059900_SNP [dm3] 3L_5059900_SNP [dm6]	T	A	1.021e^-4	0.607	INTRON Con
2L	11490953	2L_11490953_SNP [dm3] 2L_11490953_SNP [dm6]	T	A	1.021e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6213002	3L_6213002_SNP [dm3] 3L_6219902_SNP [dm6]	G	A	1.023e^-4	0.607	UPSTREAM pncr008:3L INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12177284	3R_12177284_SNP [dm3] 3R_16351562_SNP [dm6]	T	A	1.031e^-4	0.61	DOWNSTREAM Manf INTRON CG10311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3R	15768566	3R_15768566_INS [dm3] 3R_19942844_INS [dm6]	G	GAGACTATCTGTCTATATC...	1.034e^-4	0.61	INTRON Hs6st
2L	2559957	2L_2559957_SNP [dm3] 2L_2559957_SNP [dm6]	C	T	1.043e^-4	0.613	INTERGENIC
2L	6015856	2L_6015856_SNP [dm3] 2L_6015856_SNP [dm6]	C	A	1.047e^-4	0.613	INTRON H2.0
X	10029049	X_10029049_DEL [dm3] X_10135016_DEL [dm6]	CAAACAGAAGC...	C	1.049e^-4	0.613	INTRON CR44894 & 1 other
2R	18741531	2R_18741531_SNP [dm3] 2R_22854008_SNP [dm6]	A	T	1.056e^-4	0.614	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16062523	3L_16062523_SNP [dm3] 3L_16069423_SNP [dm6]	G	A	1.058e^-4	0.614	INTRON Mbs
2R	14565455	2R_14565455_SNP [dm3] 2R_18677950_SNP [dm6]	G	A	1.064e^-4	0.616	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	3593077	X_3593077_SNP [dm3] X_3699044_SNP [dm6]	T	C	1.069e^-4	0.617	INTRON Mnt
X	14624363	X_14624363_SNP [dm3] X_14730330_SNP [dm6]	C	T	1.077e^-4	0.617	INTRON NetB
3L	13080570	3L_13080570_INS [dm3] 3L_13087470_INS [dm6]	A	AA	1.077e^-4	0.617	UPSTREAM CR45749 & 1 other INTERGENIC
3L	3363249	3L_3363249_SNP [dm3] 3L_3363249_SNP [dm6]	T	A	1.079e^-4	0.617	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	15954125	2R_15954125_SNP [dm3] 2R_20066620_SNP [dm6]	C	T	1.085e^-4	0.619	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	11490818	2L_11490818_SNP [dm3] 2L_11490818_SNP [dm6]	A	G	1.092e^-4	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	162008	3L_162008_DEL [dm3] 3L_162008_DEL [dm6]	TTGTGTCGAAGCAGACATAT...	T	1.094e^-4	0.62	INTRON p130CAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	940721	X_940721_SNP [dm3] X_1046688_SNP [dm6]	T	C	1.102e^-4	0.622	SYNONYMOUS_CODING CG42259 UPSTREAM CR44779 DOWNSTREAM su_w[a]_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9993088	3R_9993088_SNP [dm3] 3R_14167366_SNP [dm6]	A	G	1.106e^-4	0.623	UTR_3_PRIME Dop1R1
3L	13910490	3L_13910490_SNP [dm3] 3L_13917390_SNP [dm6]	A	G	1.110e^-4	0.623	INTRON Rgl
2R	12804043	2R_12804043_SNP [dm3] 2R_16916538_SNP [dm6]	A	C	1.116e^-4	0.624	INTERGENIC
2R	14026447	2R_14026447_SNP [dm3] 2R_18138942_SNP [dm6]	T	C	1.121e^-4	0.624	SYNONYMOUS_CODING Pcl
2L	7008498	2L_7008498_SNP [dm3] 2L_7008498_SNP [dm6]	G	T	1.121e^-4	0.624	UTR_5_PRIME uif INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	1986883	3L_1986883_SNP [dm3] 3L_1986883_SNP [dm6]	A	G	1.127e^-4	0.625	INTERGENIC
3L	1125733	3L_1125733_SNP [dm3] 3L_1125733_SNP [dm6]	C	G	1.138e^-4	0.625	INTERGENIC	regulatory region REDfly_CRMs
3R	23822829	3R_23822829_DEL [dm3] 3R_27997107_DEL [dm6]	TCCC	T	1.144e^-4	0.625	INTERGENIC
X	3599607	X_3599607_SNP [dm3] X_3705574_SNP [dm6]	G	T	1.146e^-4	0.625	UTR_3_PRIME Rala
3L	13080440	3L_13080440_SNP [dm3] 3L_13087340_SNP [dm6]	A	G	1.148e^-4	0.625	UPSTREAM CR45749 & 1 other INTERGENIC
3L	2541070	3L_2541070_SNP [dm3] 3L_2541070_SNP [dm6]	G	A	1.148e^-4	0.625	UTR_5_PRIME Spn
3L	15946661	3L_15946661_SNP [dm3] 3L_15953561_SNP [dm6]	C	T	1.155e^-4	0.625	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12257183	2L_12257183_SNP [dm3] 2L_12257183_SNP [dm6]	A	T	1.158e^-4	0.625	INTRON aret
2R	10028459	2R_10028459_SNP [dm3] 2R_14140954_SNP [dm6]	C	T	1.160e^-4	0.625	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9929657	2L_9929657_SNP [dm3] 2L_9929657_SNP [dm6]	C	A	1.162e^-4	0.625	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	203260	3L_203260_SNP [dm3] 3L_203260_SNP [dm6]	G	T	1.163e^-4	0.625	SYNONYMOUS_CODING Gyk UPSTREAM NitFhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	13061567	2L_13061567_SNP [dm3] 2L_13061567_SNP [dm6]	C	T	1.166e^-4	0.625	INTERGENIC
2R	20054732	2R_20054732_SNP [dm3] 2R_24167209_SNP [dm6]	C	T	1.166e^-4	0.625	START_GAINED CG3328 UTR_5_PRIME CG3328 INTRON CG3328	TF binding site mE1_TFBS_chinmo
2L	5926107	2L_5926107_SNP [dm3] 2L_5926107_SNP [dm6]	G	C	1.174e^-4	0.627	UTR_5_PRIME dsf UPSTREAM CR43926
X	3552969	X_3552969_INS [dm3] X_3658936_INS [dm6]	G	GCG	1.181e^-4	0.629	INTRON AstA-R1
3L	10983376	3L_10983376_SNP [dm3] 3L_10990276_SNP [dm6]	G	T	1.185e^-4	0.629	INTRON klu
2L	16977413	2L_16977413_SNP [dm3] 2L_16977413_SNP [dm6]	T	A	1.186e^-4	0.629	INTRON beat-IIIb
X	12327272	X_12327272_SNP [dm3] X_12433239_SNP [dm6]	C	A	1.197e^-4	0.632	UTR_5_PRIME Pkcdelta
3L	4433711	3L_4433711_SNP [dm3] 3L_4433711_SNP [dm6]	C	T	1.200e^-4	0.632	SYNONYMOUS_CODING nAChRbeta1
2R	10545094	2R_10545094_SNP [dm3] 2R_14657589_SNP [dm6]	A	C	1.209e^-4	0.633	INTRON Adgf-E
3R	26035438	3R_26035438_SNP [dm3] 3R_30209716_SNP [dm6]	A	T	1.211e^-4	0.633	UPSTREAM RpS7 & 1 other INTERGENIC
3R	6821125	3R_6821125_SNP [dm3] 3R_10995403_SNP [dm6]	G	C	1.212e^-4	0.633	INTRON CG34114
X	940904	X_940904_SNP [dm3] X_1046871_SNP [dm6]	C	T	1.223e^-4	0.637	UTR_3_PRIME CG42259 UPSTREAM CR44779 DOWNSTREAM su_w[a]_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11468331	3L_11468331_SNP [dm3] 3L_11475231_SNP [dm6]	A	T	1.226e^-4	0.637	SYNONYMOUS_CODING Vha16-2
2L	11489573	2L_11489573_SNP [dm3] 2L_11489573_SNP [dm6]	T	C	1.246e^-4	0.646	INTERGENIC
2R	15874725	2R_15874725_SNP [dm3] 2R_19987220_SNP [dm6]	G	A	1.257e^-4	0.648	INTERGENIC
3L	11177477	3L_11177477_SNP [dm3] 3L_11184377_SNP [dm6]	G	A	1.258e^-4	0.648	INTRON GlcAT-P
2R	11445338	2R_11445338_SNP [dm3] 2R_15557833_SNP [dm6]	C	T	1.276e^-4	0.656	START_GAINED CG12963 UTR_5_PRIME CG12963 UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	19792162	2R_19792162_SNP [dm3] 2R_23904639_SNP [dm6]	A	C	1.286e^-4	0.659	DOWNSTREAM Lpt & 1 other INTRON CG13562
2R	17519282	2R_17519282_SNP [dm3] 2R_21631777_SNP [dm6]	C	A	1.291e^-4	0.66	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
X	3553671	X_3553671_SNP [dm3] X_3659638_SNP [dm6]	T	A	1.295e^-4	0.66	INTRON AstA-R1
3L	3766309	3L_3766309_SNP [dm3] 3L_3766309_SNP [dm6]	T	A	1.300e^-4	0.66	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3553300	X_3553300_SNP [dm3] X_3659267_SNP [dm6]	C	T	1.304e^-4	0.66	INTRON AstA-R1
3R	13568908	3R_13568908_SNP [dm3] 3R_17743186_SNP [dm6]	G	A	1.306e^-4	0.66	INTRON TyrRII
X	3236791	X_3236791_SNP [dm3] X_3342758_SNP [dm6]	A	G	1.317e^-4	0.663	UTR_3_PRIME dnc INTRON CR44886
3L	5394752	3L_5394752_SNP [dm3] 3L_5401652_SNP [dm6]	T	G	1.321e^-4	0.663	INTERGENIC
X	3553316	X_3553316_SNP [dm3] X_3659283_SNP [dm6]	G	A	1.328e^-4	0.663	INTRON AstA-R1
2R	11442772	2R_11442772_SNP [dm3] 2R_15555267_SNP [dm6]	T	A	1.328e^-4	0.663	UPSTREAM CG12963 INTERGENIC
2R	10545298	2R_10545298_SNP [dm3] 2R_14657793_SNP [dm6]	C	T	1.329e^-4	0.663	SYNONYMOUS_CODING Adgf-E	TF binding site mE1_TFBS_cad
3L	22828813	3L_22828813_SNP [dm3] 3L_22835713_SNP [dm6]	G	A	1.347e^-4	0.667	UPSTREAM jim DOWNSTREAM CG45428 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9329752	2R_9329752_SNP [dm3] 2R_13442247_SNP [dm6]	T	C	1.350e^-4	0.667	SYNONYMOUS_CODING cnn DOWNSTREAM cnn	TF binding site mE1_TFBS_cad
3L	12851064	3L_12851064_INS [dm3] 3L_12857964_INS [dm6]	T	TTTT	1.351e^-4	0.667	UTR_3_PRIME CG32107 DOWNSTREAM Ent3
2R	8584028	2R_8584028_SNP [dm3] 2R_12696523_SNP [dm6]	G	A	1.357e^-4	0.667	INTERGENIC
3L	18016259	3L_18016259_SNP [dm3] 3L_18023159_SNP [dm6]	C	T	1.358e^-4	0.667	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2459636	3L_2459636_SNP [dm3] 3L_2459636_SNP [dm6]	C	G	1.358e^-4	0.667	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
X	3779449	X_3779449_SNP [dm3] X_3885416_SNP [dm6]	C	T	1.372e^-4	0.669	INTRON CG15239
X	4982918	X_4982918_SNP [dm3] X_5088885_SNP [dm6]	G	A	1.373e^-4	0.669	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	9449377	X_9449377_SNP [dm3] X_9555344_SNP [dm6]	C	T	1.376e^-4	0.669	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2331209	3L_2331209_SNP [dm3] 3L_2331209_SNP [dm6]	T	A	1.378e^-4	0.669	INTRON MsR1
2L	16770436	2L_16770436_SNP [dm3] 2L_16770436_SNP [dm6]	C	T	1.385e^-4	0.671	INTRON Mhc
3R	23685000	3R_23685000_SNP [dm3] 3R_27859278_SNP [dm6]	G	A	1.394e^-4	0.674	INTRON CG34353
X	3550760	X_3550760_SNP [dm3] X_3656727_SNP [dm6]	C	T	1.401e^-4	0.675	SYNONYMOUS_CODING AstA-R1
X	9692131	X_9692131_INS [dm3] X_9798098_INS [dm6]	G	GG	1.406e^-4	0.675	INTRON CG32698
3L	22828720	3L_22828720_SNP [dm3] 3L_22835620_SNP [dm6]	A	T	1.407e^-4	0.675	UPSTREAM jim DOWNSTREAM CG45428 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20063296	2L_20063296_SNP [dm3] 2L_20063296_SNP [dm6]	C	T	1.413e^-4	0.676	UTR_3_PRIME lok DOWNSTREAM vls INTRON lok	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16859487	2L_16859487_SNP [dm3] 2L_16859487_SNP [dm6]	T	C	1.436e^-4	0.676	UPSTREAM CG31809 DOWNSTREAM CG6012 INTERGENIC	transposable element FlyBase
2R	19777926	2R_19777926_SNP [dm3] 2R_23890403_SNP [dm6]	A	C	1.450e^-4	0.676	UPSTREAM DNA-ligI & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	19160176	3L_19160176_SNP [dm3] 3L_19167076_SNP [dm6]	T	A	1.450e^-4	0.676	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10006501	2R_10006501_SNP [dm3] 2R_14118996_SNP [dm6]	G	T	1.450e^-4	0.676	INTRON Prosap
2L	13533844	2L_13533844_SNP [dm3] 2L_13533844_SNP [dm6]	T	C	1.455e^-4	0.676	DOWNSTREAM CG33645 INTRON B4
X	19448887	X_19448887_SNP [dm3] X_19554854_SNP [dm6]	G	A	1.465e^-4	0.676	INTERGENIC
2L	11499186	2L_11499186_SNP [dm3] 2L_11499186_SNP [dm6]	C	A	1.467e^-4	0.676	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7297823	3L_7297823_SNP [dm3] 3L_7304723_SNP [dm6]	C	T	1.468e^-4	0.676	INTRON unc-13-4A
2R	9742856	2R_9742856_SNP [dm3] 2R_13855351_SNP [dm6]	A	G	1.472e^-4	0.676	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367
3L	7497193	3L_7497193_SNP [dm3] 3L_7504093_SNP [dm6]	C	A	1.473e^-4	0.676	INTERGENIC
3R	26034383	3R_26034383_SNP [dm3] 3R_30208661_SNP [dm6]	C	G	1.474e^-4	0.676	SPLICE_SITE_REGION RpS7 UTR_5_PRIME RpS7 UPSTREAM snoRNA:Psi18S-1377a & 1 other INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6995794	2R_6995794_SNP [dm3] 2R_11108289_SNP [dm6]	C	G	1.475e^-4	0.676	INTRON luna
3R	25637677	3R_25637677_SNP [dm3] 3R_29811955_SNP [dm6]	G	C	1.476e^-4	0.676	SYNONYMOUS_CODING ca
X	18663982	X_18663982_SNP [dm3] X_18769949_SNP [dm6]	C	T	1.477e^-4	0.676	INTRON CCKLR-17D3
2L	5926112	2L_5926112_SNP [dm3] 2L_5926112_SNP [dm6]	T	C	1.477e^-4	0.676	UTR_5_PRIME dsf UPSTREAM CR43926
2L	2401558	2L_2401558_SNP [dm3] 2L_2401558_SNP [dm6]	T	A	1.484e^-4	0.676	INTRON VGlut	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	3552718	X_3552718_SNP [dm3] X_3658685_SNP [dm6]	A	T	1.484e^-4	0.676	INTRON AstA-R1
2L	11481423	2L_11481423_SNP [dm3] 2L_11481423_SNP [dm6]	T	G	1.487e^-4	0.676	INTERGENIC
2L	7900597	2L_7900597_SNP [dm3] 2L_7900597_SNP [dm6]	C	A	1.488e^-4	0.676	INTRON Snoo
2L	19183830	2L_19183830_SNP [dm3] 2L_19183830_SNP [dm6]	A	G	1.488e^-4	0.676	UPSTREAM CR17567 DOWNSTREAM gammaTub37C INTERGENIC
2R	1299839	2R_1299839_SNP [dm3] 2R_5412334_SNP [dm6]	C	A	1.504e^-4	0.676	INTERGENIC	transposable element FlyBase
2L	11480250	2L_11480250_DEL [dm3] 2L_11480250_DEL [dm6]	AA	A	1.513e^-4	0.676	INTERGENIC
2R	10288072	2R_10288072_SNP [dm3] 2R_14400567_SNP [dm6]	T	G	1.514e^-4	0.676	INTERGENIC
X	8137256	X_8137256_SNP [dm3] X_8243223_SNP [dm6]	T	A	1.516e^-4	0.676	START_GAINED sni UTR_5_PRIME sni UPSTREAM Trxr-1 INTRON Trxr-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	24153699	3R_24153699_SNP [dm3] 3R_28327977_SNP [dm6]	A	C	1.517e^-4	0.676	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24153706	3R_24153706_SNP [dm3] 3R_28327984_SNP [dm6]	T	G	1.518e^-4	0.676	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_zfh1
X	3709549	X_3709549_SNP [dm3] X_3815516_SNP [dm6]	A	G	1.532e^-4	0.676	INTRON ec	TF binding site BDTNP1_TFBS_twi
X	19448824	X_19448824_SNP [dm3] X_19554791_SNP [dm6]	G	T	1.534e^-4	0.676	INTERGENIC
3L	785042	3L_785042_SNP [dm3] 3L_785042_SNP [dm6]	C	T	1.534e^-4	0.676	INTERGENIC
3L	16447700	3L_16447700_SNP [dm3] 3L_16454600_SNP [dm6]	G	C	1.539e^-4	0.676	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6738821	2L_6738821_SNP [dm3] 2L_6738821_SNP [dm6]	A	G	1.539e^-4	0.676	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad
2R	10545013	2R_10545013_SNP [dm3] 2R_14657508_SNP [dm6]	G	C	1.541e^-4	0.676	INTRON Adgf-E
2L	20361128	2L_20361128_SNP [dm3] 2L_20361128_SNP [dm6]	A	G	1.547e^-4	0.676	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	18522257	2L_18522257_SNP [dm3] 2L_18522257_SNP [dm6]	G	A	1.550e^-4	0.676	INTRON CG10211
X	3552721	X_3552721_SNP [dm3] X_3658688_SNP [dm6]	A	T	1.555e^-4	0.676	INTRON AstA-R1
3L	8810895	3L_8810895_SNP [dm3] 3L_8817795_SNP [dm6]	T	C	1.556e^-4	0.676	INTERGENIC
2R	19862432	2R_19862432_SNP [dm3] 2R_23974909_SNP [dm6]	G	A	1.559e^-4	0.676	SYNONYMOUS_CODING mr DOWNSTREAM Gadd34
X	14659974	X_14659974_SNP [dm3] X_14765941_SNP [dm6]	A	T	1.560e^-4	0.676	UPSTREAM CG15890 INTERGENIC
2L	16501025	2L_16501025_SNP [dm3] 2L_16501025_SNP [dm6]	A	G	1.563e^-4	0.676	UPSTREAM Tpr2 INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18359111	2L_18359111_SNP [dm3] 2L_18359111_SNP [dm6]	A	G	1.570e^-4	0.676	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da
2R	11445134	2R_11445134_SNP [dm3] 2R_15557629_SNP [dm6]	C	T	1.570e^-4	0.676	UPSTREAM CG12963 INTRON CG12963
3L	7901843	3L_7901843_SNP [dm3] 3L_7908743_SNP [dm6]	T	A	1.573e^-4	0.676	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13866269	2R_13866269_SNP [dm3] 2R_17978764_SNP [dm6]	G	A	1.576e^-4	0.676	INTRON dpr13
2L	16729666	2L_16729666_SNP [dm3] 2L_16729666_SNP [dm6]	G	A	1.577e^-4	0.676	UPSTREAM CG31812 DOWNSTREAM CG17996 EXON CR43671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	14063419	3R_14063419_SNP [dm3] 3R_18237697_SNP [dm6]	A	C	1.578e^-4	0.676	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19191161	2L_19191161_DEL [dm3] 2L_19191161_DEL [dm6]	ACTTAT	A	1.583e^-4	0.676	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16159599	X_16159599_SNP [dm3] X_16265566_SNP [dm6]	C	T	1.585e^-4	0.676	SYNONYMOUS_CODING CG12507
2R	16946078	2R_16946078_SNP [dm3] 2R_21058573_SNP [dm6]	C	A	1.585e^-4	0.676	INTRON cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	15051327	2R_15051327_SNP [dm3] 2R_19163822_SNP [dm6]	C	G	1.593e^-4	0.678	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12134528	3L_12134528_SNP [dm3] 3L_12141428_SNP [dm6]	C	T	1.600e^-4	0.679	INTRON RhoGAP68F
2L	11491012	2L_11491012_SNP [dm3] 2L_11491012_SNP [dm6]	A	G	1.611e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6556874	2R_6556874_SNP [dm3] 2R_10669369_SNP [dm6]	T	G	1.623e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12579659	2L_12579659_SNP [dm3] 2L_12579659_SNP [dm6]	A	G	1.639e^-4	0.687	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10018285	2L_10018285_SNP [dm3] 2L_10018285_SNP [dm6]	A	G	1.640e^-4	0.687	UPSTREAM CG13131 INTERGENIC
3L	2331206	3L_2331206_INS [dm3] 3L_2331206_INS [dm6]	T	TCATTGAAAACAAAT...	1.640e^-4	0.687	INTRON MsR1
3L	8415628	3L_8415628_INS [dm3] 3L_8422528_INS [dm6]	T	TGT	1.647e^-4	0.687	UPSTREAM CG32354 INTERGENIC
3L	4399904	3L_4399904_SNP [dm3] 3L_4399904_SNP [dm6]	C	T	1.655e^-4	0.687	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	4133505	2R_4133505_SNP [dm3] 2R_8246000_SNP [dm6]	C	T	1.656e^-4	0.687	EXON CR44446	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7497194	3L_7497194_SNP [dm3] 3L_7504094_SNP [dm6]	T	A	1.662e^-4	0.687	INTERGENIC
3L	1125720	3L_1125720_SNP [dm3] 3L_1125720_SNP [dm6]	G	A	1.662e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs
2R	16700777	2R_16700777_SNP [dm3] 2R_20813272_SNP [dm6]	G	A	1.668e^-4	0.687	INTERGENIC
3L	5059947	3L_5059947_SNP [dm3] 3L_5059947_SNP [dm6]	A	T	1.669e^-4	0.687	INTRON Con
2R	10543141	2R_10543141_SNP [dm3] 2R_14655636_SNP [dm6]	A	G	1.669e^-4	0.687	INTERGENIC
3R	10808597	3R_10808597_SNP [dm3] 3R_14982875_SNP [dm6]	G	T	1.671e^-4	0.687	INTERGENIC
3R	14643448	3R_14643448_SNP [dm3] 3R_18817726_SNP [dm6]	C	T	1.680e^-4	0.689	INTRON CG18208
X	3551221	X_3551221_SNP [dm3] X_3657188_SNP [dm6]	T	G	1.688e^-4	0.691	INTRON AstA-R1
2R	15874712	2R_15874712_INS [dm3] 2R_19987207_INS [dm6]	A	AT	1.694e^-4	0.692	INTERGENIC
3L	7027962	3L_7027962_SNP [dm3] 3L_7034862_SNP [dm6]	T	C	1.697e^-4	0.692	INTRON Mp
2L	16173291	2L_16173291_SNP [dm3] 2L_16173291_SNP [dm6]	A	G	1.701e^-4	0.692	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3592412	X_3592412_SNP [dm3] X_3698379_SNP [dm6]	G	A	1.724e^-4	0.696	NON_SYNONYMOUS_CODING Mnt INTRON Mnt
2R	16730137	2R_16730137_SNP [dm3] 2R_20842632_SNP [dm6]	A	G	1.727e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18276586	2R_18276586_SNP [dm3] 2R_22389081_SNP [dm6]	T	A	1.730e^-4	0.696	INTRON CG13506
3L	16379011	3L_16379011_SNP [dm3] 3L_16385911_SNP [dm6]	A	G	1.735e^-4	0.696	UTR_5_PRIME CG4729 UPSTREAM RAF2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13574400	3R_13574400_DEL [dm3] 3R_17748678_DEL [dm6]	AA	A	1.736e^-4	0.696	INTERGENIC
2R	9968249	2R_9968249_SNP [dm3] 2R_14080744_SNP [dm6]	A	G	1.739e^-4	0.696	INTRON Prosap
2L	7101308	2L_7101308_SNP [dm3] 2L_7101308_SNP [dm6]	A	C	1.745e^-4	0.696	INTRON Pvf3
3R	18792036	3R_18792036_SNP [dm3] 3R_22966314_SNP [dm6]	T	A	1.750e^-4	0.696	UTR_5_PRIME Tpl94D
3R	10936922	3R_10936922_SNP [dm3] 3R_15111200_SNP [dm6]	A	C	1.750e^-4	0.696	INTRON CG42788
2L	11482169	2L_11482169_SNP [dm3] 2L_11482169_SNP [dm6]	T	A	1.752e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3549041	X_3549041_DEL [dm3] X_3655008_DEL [dm6]	ACA	A	1.760e^-4	0.696	INTRON AstA-R1
3L	7497172	3L_7497172_SNP [dm3] 3L_7504072_SNP [dm6]	G	A	1.762e^-4	0.696	INTERGENIC
2L	3797806	2L_3797806_SNP [dm3] 2L_3797806_SNP [dm6]	T	G	1.763e^-4	0.696	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
X	4538953	X_4538953_SNP [dm3] X_4644920_SNP [dm6]	G	A	1.763e^-4	0.696	UPSTREAM CG3081 & 1 other DOWNSTREAM HLH4C INTERGENIC
X	3550211	X_3550211_SNP [dm3] X_3656178_SNP [dm6]	A	G	1.767e^-4	0.696	INTRON AstA-R1
3L	1374135	3L_1374135_SNP [dm3] 3L_1374135_SNP [dm6]	T	G	1.773e^-4	0.697	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_inv
2R	4631617	2R_4631617_SNP [dm3] 2R_8744112_SNP [dm6]	C	T	1.780e^-4	0.698	INTRON CG8740 EXON CR44277
2R	18032648	2R_18032648_SNP [dm3] 2R_22145143_SNP [dm6]	C	G	1.786e^-4	0.699	INTRON a
2L	11496955	2L_11496955_SNP [dm3] 2L_11496955_SNP [dm6]	A	T	1.797e^-4	0.701	NON_SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
3L	10302473	3L_10302473_SNP [dm3] 3L_10309373_SNP [dm6]	T	A	1.802e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10808602	3R_10808602_SNP [dm3] 3R_14982880_SNP [dm6]	C	T	1.806e^-4	0.701	INTERGENIC
X	5369297	X_5369297_SNP [dm3] X_5475264_SNP [dm6]	C	A	1.809e^-4	0.701	INTRON SPR
X	3552734	X_3552734_SNP [dm3] X_3658701_SNP [dm6]	T	C	1.813e^-4	0.701	INTRON AstA-R1
3R	13271613	3R_13271613_SNP [dm3] 3R_17445891_SNP [dm6]	A	T	1.821e^-4	0.701	DOWNSTREAM Eh INTRON CG5873
2L	1838708	2L_1838708_SNP [dm3] 2L_1838708_SNP [dm6]	T	A	1.823e^-4	0.701	DOWNSTREAM CR44073 INTRON wry
2L	5924888	2L_5924888_SNP [dm3] 2L_5924888_SNP [dm6]	A	T	1.823e^-4	0.701	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5411736	2L_5411736_SNP [dm3] 2L_5411736_SNP [dm6]	C	T	1.824e^-4	0.701	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2430100	2L_2430100_SNP [dm3] 2L_2430100_SNP [dm6]	C	T	1.827e^-4	0.701	INTRON dpp
X	19448825	X_19448825_INS [dm3] X_19554792_INS [dm6]	A	AC	1.833e^-4	0.701	INTERGENIC
3R	1696894	3R_1696894_SNP [dm3] 3R_5871172_SNP [dm6]	T	G	1.847e^-4	0.703	INTRON CG34113
3L	11625875	3L_11625875_SNP [dm3] 3L_11632775_SNP [dm6]	G	A	1.852e^-4	0.703	INTRON CG32091 EXON CR45158
3L	2225734	3L_2225734_SNP [dm3] 3L_2225734_SNP [dm6]	G	T	1.853e^-4	0.703	INTERGENIC
3L	3933975	3L_3933975_SNP [dm3] 3L_3933975_SNP [dm6]	C	T	1.853e^-4	0.703	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
2L	6021814	2L_6021814_SNP [dm3] 2L_6021814_SNP [dm6]	T	C	1.856e^-4	0.703	DOWNSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7804154	3L_7804154_SNP [dm3] 3L_7811054_SNP [dm6]	A	G	1.866e^-4	0.703	DOWNSTREAM Pdp1 INTERGENIC
3R	20569723	3R_20569723_SNP [dm3] 3R_24744001_SNP [dm6]	C	T	1.868e^-4	0.703	SPLICE_SITE_REGION tok INTRON tok	TF binding site mE1_TFBS_cad
3L	2990383	3L_2990383_SNP [dm3] 3L_2990383_SNP [dm6]	C	A	1.872e^-4	0.703	INTERGENIC
3L	16754691	3L_16754691_SNP [dm3] 3L_16761591_SNP [dm6]	C	T	1.875e^-4	0.703	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5886342	X_5886342_SNP [dm3] X_5992309_SNP [dm6]	A	G	1.875e^-4	0.703	UTR_3_PRIME CG5966	TF binding site mE1_TFBS_bab1
3L	3284230	3L_3284230_SNP [dm3] 3L_3284230_SNP [dm6]	C	T	1.877e^-4	0.703	INTRON CG12017
X	12632026	X_12632026_SNP [dm3] X_12737993_SNP [dm6]	A	G	1.885e^-4	0.703	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9067053	3R_9067053_SNP [dm3] 3R_13241331_SNP [dm6]	A	T	1.886e^-4	0.703	INTRON Ace
2R	9419460	2R_9419460_SNP [dm3] 2R_13531955_SNP [dm6]	G	A	1.891e^-4	0.704	INTRON Vmat
2R	19778146	2R_19778146_SNP [dm3] 2R_23890623_SNP [dm6]	A	C	1.908e^-4	0.708	UPSTREAM Dcp1 INTRON DNA-ligI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	1094408	2L_1094408_SNP [dm3] 2L_1094408_SNP [dm6]	A	C	1.909e^-4	0.708	INTRON CG4629
2L	3438297	2L_3438297_SNP [dm3] 2L_3438297_SNP [dm6]	G	A	1.929e^-4	0.712	INTERGENIC	insulator Insulator_Class_II.mE01
3L	785332	3L_785332_SNP [dm3] 3L_785332_SNP [dm6]	G	A	1.932e^-4	0.712	INTERGENIC
3R	25210868	3R_25210868_SNP [dm3] 3R_29385146_SNP [dm6]	T	A	1.935e^-4	0.712	INTRON Ptp99A
3L	5302771	3L_5302771_SNP [dm3] 3L_5309671_SNP [dm6]	C	T	1.936e^-4	0.712	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11490925	2L_11490925_SNP [dm3] 2L_11490925_SNP [dm6]	C	T	1.943e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13011743	X_13011743_SNP [dm3] X_13117710_SNP [dm6]	T	C	1.948e^-4	0.714	INTRON CG42237
3L	884585	3L_884585_SNP [dm3] 3L_884585_SNP [dm6]	C	T	1.953e^-4	0.714	INTRON CG32479
3L	2225760	3L_2225760_SNP [dm3] 3L_2225760_SNP [dm6]	C	G	1.965e^-4	0.717	INTERGENIC
3L	17924744	3L_17924744_SNP [dm3] 3L_17931644_SNP [dm6]	G	A	1.974e^-4	0.717	INTERGENIC
2R	19137301	2R_19137301_DEL [dm3] 2R_23249778_DEL [dm6]	GATAC	G	1.975e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6949530	2R_6949530_SNP [dm3] 2R_11062025_SNP [dm6]	C	T	1.984e^-4	0.717	INTRON luna
3L	4773493	3L_4773493_SNP [dm3] 3L_4773493_SNP [dm6]	G	A	1.986e^-4	0.717	INTRON RhoGEF64C
3R	13962394	3R_13962394_SNP [dm3] 3R_18136672_SNP [dm6]	A	C	1.989e^-4	0.717	INTERGENIC
3L	785010	3L_785010_SNP [dm3] 3L_785010_SNP [dm6]	C	A	1.993e^-4	0.717	INTERGENIC
2R	19351804	2R_19351804_SNP [dm3] 2R_23464281_SNP [dm6]	C	T	1.994e^-4	0.717	INTRON CG43795
3L	13646728	3L_13646728_SNP [dm3] 3L_13653628_SNP [dm6]	G	A	1.997e^-4	0.717	INTRON bru-3
2L	8222248	2L_8222248_SNP [dm3] 2L_8222248_SNP [dm6]	G	A	2.006e^-4	0.718	SYNONYMOUS_CODING Pvr
3R	13426315	3R_13426315_SNP [dm3] 3R_17600593_SNP [dm6]	A	T	2.015e^-4	0.718	INTERGENIC
2R	19592159	2R_19592159_SNP [dm3] 2R_23704636_SNP [dm6]	A	C	2.015e^-4	0.718	SYNONYMOUS_CODING l_2_dtl DOWNSTREAM l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11491981	2L_11491981_SNP [dm3] 2L_11491981_SNP [dm6]	C	T	2.019e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16474538	2R_16474538_SNP [dm3] 2R_20587033_SNP [dm6]	T	G	2.024e^-4	0.718	UPSTREAM bl INTRON Nnf1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16474555	2R_16474555_SNP [dm3] 2R_20587050_SNP [dm6]	T	A	2.024e^-4	0.718	UPSTREAM bl INTRON Nnf1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6386603	3L_6386603_SNP [dm3] 3L_6393503_SNP [dm6]	A	G	2.033e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	2424711	2L_2424711_SNP [dm3] 2L_2424711_SNP [dm6]	A	T	2.037e^-4	0.718	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	7465982	3R_7465982_DEL [dm3] 3R_11640260_DEL [dm6]	GACACCG	G	2.040e^-4	0.718	INTRON Csk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8974663	3L_8974663_SNP [dm3] 3L_8981563_SNP [dm6]	C	T	2.045e^-4	0.718	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
3R	13271584	3R_13271584_SNP [dm3] 3R_17445862_SNP [dm6]	T	C	2.046e^-4	0.718	DOWNSTREAM Eh INTRON CG5873
3L	3119757	3L_3119757_SNP [dm3] 3L_3119757_SNP [dm6]	A	G	2.051e^-4	0.718	INTRON prominin-like
2L	11482978	2L_11482978_SNP [dm3] 2L_11482978_SNP [dm6]	A	G	2.052e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22813162	3R_22813162_SNP [dm3] 3R_26987440_SNP [dm6]	T	A	2.066e^-4	0.718	NON_SYNONYMOUS_CODING CG31075 INTRON CG31075
2L	1094390	2L_1094390_SNP [dm3] 2L_1094390_SNP [dm6]	T	G	2.072e^-4	0.718	INTRON CG4629
2L	16804554	2L_16804554_SNP [dm3] 2L_16804554_SNP [dm6]	T	C	2.075e^-4	0.718	UPSTREAM CG13272 & 1 other INTRON CG13280
2R	18276497	2R_18276497_SNP [dm3] 2R_22388992_SNP [dm6]	A	G	2.081e^-4	0.718	INTRON CG13506
2L	16521970	2L_16521970_SNP [dm3] 2L_16521970_SNP [dm6]	G	A	2.083e^-4	0.718	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19778253	2R_19778253_SNP [dm3] 2R_23890730_SNP [dm6]	T	C	2.086e^-4	0.718	SPLICE_SITE_REGION DNA-ligI SYNONYMOUS_CODING DNA-ligI UPSTREAM Dcp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	10936450	3R_10936450_SNP [dm3] 3R_15110728_SNP [dm6]	C	A	2.087e^-4	0.718	INTRON CG42788
3R	26183602	3R_26183602_SNP [dm3] 3R_30357880_SNP [dm6]	T	A	2.099e^-4	0.718	UTR_5_PRIME hdc INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7898268	2L_7898268_SNP [dm3] 2L_7898268_SNP [dm6]	C	G	2.099e^-4	0.718	INTRON Snoo
2R	4631217	2R_4631217_SNP [dm3] 2R_8743712_SNP [dm6]	G	A	2.100e^-4	0.718	DOWNSTREAM CR44277 INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8811200	3L_8811200_SNP [dm3] 3L_8818100_SNP [dm6]	G	A	2.101e^-4	0.718	INTERGENIC
2L	2424709	2L_2424709_SNP [dm3] 2L_2424709_SNP [dm6]	A	T	2.103e^-4	0.718	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	12473208	3L_12473208_SNP [dm3] 3L_12480108_SNP [dm6]	T	A	2.108e^-4	0.718	INTRON CG10663
2R	17519411	2R_17519411_SNP [dm3] 2R_21631906_SNP [dm6]	T	G	2.111e^-4	0.718	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3R	19833206	3R_19833206_SNP [dm3] 3R_24007484_SNP [dm6]	G	T	2.113e^-4	0.718	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6556859	2R_6556859_SNP [dm3] 2R_10669354_SNP [dm6]	C	A	2.114e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11487189	2L_11487189_SNP [dm3] 2L_11487189_SNP [dm6]	G	T	2.121e^-4	0.718	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8383034	3L_8383034_SNP [dm3] 3L_8389934_SNP [dm6]	T	C	2.128e^-4	0.718	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3553239	X_3553239_SNP [dm3] X_3659206_SNP [dm6]	G	C	2.128e^-4	0.718	INTRON AstA-R1
3L	13080531	3L_13080531_SNP [dm3] 3L_13087431_SNP [dm6]	C	A	2.128e^-4	0.718	UPSTREAM CR45749 & 1 other INTERGENIC
3L	4437153	3L_4437153_SNP [dm3] 3L_4437153_SNP [dm6]	C	T	2.133e^-4	0.718	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
2R	13446393	2R_13446393_SNP [dm3] 2R_17558888_SNP [dm6]	A	T	2.134e^-4	0.718	INTRON Klp54D
2R	10472242	2R_10472242_SNP [dm3] 2R_14584737_SNP [dm6]	G	A	2.139e^-4	0.718	UTR_3_PRIME ttv
3L	6677838	3L_6677838_SNP [dm3] 3L_6684738_SNP [dm6]	C	T	2.139e^-4	0.718	INTERGENIC
2L	2002145	2L_2002145_SNP [dm3] 2L_2002145_SNP [dm6]	C	T	2.145e^-4	0.718	INTRON CG33543 EXON CR43464
3L	20830485	3L_20830485_SNP [dm3] 3L_20837385_SNP [dm6]	A	T	2.155e^-4	0.72	UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288 INTERGENIC
2R	17672760	2R_17672760_SNP [dm3] 2R_21785255_SNP [dm6]	G	C	2.168e^-4	0.722	INTERGENIC
2L	7107336	2L_7107336_SNP [dm3] 2L_7107336_SNP [dm6]	A	G	2.168e^-4	0.722	SYNONYMOUS_CODING Pvf3
2L	16173297	2L_16173297_SNP [dm3] 2L_16173297_SNP [dm6]	T	C	2.170e^-4	0.722	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13121556	2L_13121556_SNP [dm3] 2L_13121556_SNP [dm6]	G	T	2.174e^-4	0.722	DOWNSTREAM CG43050 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14229214	2L_14229214_SNP [dm3] 2L_14229214_SNP [dm6]	G	A	2.180e^-4	0.722	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
X	15549723	X_15549723_SNP [dm3] X_15655690_SNP [dm6]	T	A	2.181e^-4	0.722	INTERGENIC	transposable element FlyBase
2L	91543	2L_91543_SNP [dm3] 2L_91543_SNP [dm6]	G	C	2.193e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16924670	2R_16924670_DEL [dm3] 2R_21037165_DEL [dm6]	GCCAGCCGCAG...	G	2.202e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15768321	3R_15768321_SNP [dm3] 3R_19942599_SNP [dm6]	A	G	2.205e^-4	0.725	INTRON Hs6st
2R	10028612	2R_10028612_SNP [dm3] 2R_14141107_SNP [dm6]	C	A	2.210e^-4	0.725	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	8946795	3L_8946795_SNP [dm3] 3L_8953695_SNP [dm6]	G	C	2.213e^-4	0.725	UPSTREAM orb2 & 1 other INTRON orb2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7896730	2L_7896730_SNP [dm3] 2L_7896730_SNP [dm6]	T	G	2.213e^-4	0.725	NON_SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad
2R	6555976	2R_6555976_DEL [dm3] 2R_10668471_DEL [dm6]	TCCTAAAACAATTC...	A	2.233e^-4	0.729	INTERGENIC
2L	7888793	2L_7888793_SNP [dm3] 2L_7888793_SNP [dm6]	C	T	2.234e^-4	0.729	SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_sens
3L	13362061	3L_13362061_SNP [dm3] 3L_13368961_SNP [dm6]	C	T	2.249e^-4	0.729	INTERGENIC
3L	8327567	3L_8327567_MNP [dm3] 3L_8334467_MNP [dm6]	TGC	AAG	2.253e^-4	0.729	INTERGENIC
2L	2424776	2L_2424776_SNP [dm3] 2L_2424776_SNP [dm6]	A	G	2.254e^-4	0.729	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	26033696	3R_26033696_SNP [dm3] 3R_30207974_SNP [dm6]	G	T	2.258e^-4	0.729	UPSTREAM snoRNA:Psi18S-1377e & 4 others INTRON RpS7 EXON snoRNA:Psi28S-2626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22092978	3R_22092978_SNP [dm3] 3R_26267256_SNP [dm6]	T	A	2.258e^-4	0.729	INTRON CG6154
2R	17958951	2R_17958951_SNP [dm3] 2R_22071446_SNP [dm6]	C	T	2.268e^-4	0.729	UTR_3_PRIME CG11474 UPSTREAM CG11475
3L	6710958	3L_6710958_SNP [dm3] 3L_6717858_SNP [dm6]	T	C	2.271e^-4	0.729	INTRON ple
2L	12990796	2L_12990796_SNP [dm3] 2L_12990796_SNP [dm6]	T	G	2.276e^-4	0.729	INTERGENIC
2L	5513660	2L_5513660_SNP [dm3] 2L_5513660_SNP [dm6]	T	C	2.289e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	13213562	2L_13213562_SNP [dm3] 2L_13213562_SNP [dm6]	G	A	2.290e^-4	0.729	SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4219137	3L_4219137_SNP [dm3] 3L_4219137_SNP [dm6]	A	G	2.293e^-4	0.729	SYNONYMOUS_CODING CG43367
3L	3954745	3L_3954745_SNP [dm3] 3L_3954745_SNP [dm6]	G	C	2.299e^-4	0.729	UTR_3_PRIME CG12605
2L	5924751	2L_5924751_SNP [dm3] 2L_5924751_SNP [dm6]	A	T	2.306e^-4	0.729	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15488416	2L_15488416_SNP [dm3] 2L_15488416_SNP [dm6]	G	A	2.316e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16977634	2L_16977634_SNP [dm3] 2L_16977634_SNP [dm6]	A	G	2.316e^-4	0.729	INTRON beat-IIIb
2R	9532697	2R_9532697_SNP [dm3] 2R_13645192_SNP [dm6]	G	A	2.317e^-4	0.729	INTRON fas
3L	2758695	3L_2758695_SNP [dm3] 3L_2758695_SNP [dm6]	G	A	2.330e^-4	0.729	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17564517	X_17564517_SNP [dm3] X_17670484_SNP [dm6]	G	A	2.334e^-4	0.729	SYNONYMOUS_CODING CG12990
X	3548281	X_3548281_SNP [dm3] X_3654248_SNP [dm6]	C	T	2.334e^-4	0.729	INTRON AstA-R1
3R	18718000	3R_18718000_SNP [dm3] 3R_22892278_SNP [dm6]	C	G	2.336e^-4	0.729	INTERGENIC
X	3575305	X_3575305_SNP [dm3] X_3681272_SNP [dm6]	G	T	2.338e^-4	0.729	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8032902	3L_8032902_SNP [dm3] 3L_8039802_SNP [dm6]	A	G	2.344e^-4	0.729	INTRON nmo
3R	25637593	3R_25637593_SNP [dm3] 3R_29811871_SNP [dm6]	C	G	2.348e^-4	0.729	INTRON ca
3L	13226705	3L_13226705_SNP [dm3] 3L_13233605_SNP [dm6]	G	T	2.353e^-4	0.729	INTRON caps
2R	10011270	2R_10011270_SNP [dm3] 2R_14123765_SNP [dm6]	G	C	2.359e^-4	0.729	INTRON Prosap
2L	16522049	2L_16522049_SNP [dm3] 2L_16522049_SNP [dm6]	A	T	2.362e^-4	0.729	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3956695	2L_3956695_SNP [dm3] 2L_3956695_SNP [dm6]	T	C	2.368e^-4	0.729	INTRON fred
2R	10875874	2R_10875874_SNP [dm3] 2R_14988369_SNP [dm6]	A	G	2.369e^-4	0.729	SYNONYMOUS_CODING CG7639 INTRON pcs
X	12633015	X_12633015_INS [dm3] X_12738982_INS [dm6]	A	ATGTA	2.372e^-4	0.729	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	779630	3L_779630_SNP [dm3] 3L_779630_SNP [dm6]	C	A	2.374e^-4	0.729	INTERGENIC
3L	10964665	3L_10964665_SNP [dm3] 3L_10971565_SNP [dm6]	C	G	2.376e^-4	0.729	INTERGENIC
3L	8327570	3L_8327570_INS [dm3] 3L_8334470_INS [dm6]	A	AGA	2.376e^-4	0.729	INTERGENIC
2L	6023957	2L_6023957_SNP [dm3] 2L_6023957_SNP [dm6]	C	G	2.379e^-4	0.729	SYNONYMOUS_CODING CG9107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5012027	3L_5012027_SNP [dm3] 3L_5012027_SNP [dm6]	G	A	2.380e^-4	0.729	SYNONYMOUS_CODING CG12027 INTRON Con
2R	9419457	2R_9419457_SNP [dm3] 2R_13531952_SNP [dm6]	C	T	2.382e^-4	0.729	INTRON Vmat
3R	5753067	3R_5753067_SNP [dm3] 3R_9927345_SNP [dm6]	A	G	2.384e^-4	0.729	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12123178	2L_12123178_SNP [dm3] 2L_12123178_SNP [dm6]	C	A	2.384e^-4	0.729	INTRON CG17211
3L	10132321	3L_10132321_SNP [dm3] 3L_10139221_SNP [dm6]	T	C	2.386e^-4	0.729	UTR_3_PRIME dpr6
3L	10132322	3L_10132322_SNP [dm3] 3L_10139222_SNP [dm6]	A	C	2.386e^-4	0.729	UTR_3_PRIME dpr6
2R	17519283	2R_17519283_SNP [dm3] 2R_21631778_SNP [dm6]	C	A	2.398e^-4	0.73	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	15487228	2L_15487228_SNP [dm3] 2L_15487228_SNP [dm6]	T	A	2.400e^-4	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3311349	3L_3311349_SNP [dm3] 3L_3311349_SNP [dm6]	A	T	2.401e^-4	0.73	INTRON ZnT63C
2R	14972390	2R_14972390_SNP [dm3] 2R_19084885_SNP [dm6]	C	T	2.407e^-4	0.73	INTRON 5-HT1A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3352000	2R_3352000_SNP [dm3] 2R_7464495_SNP [dm6]	C	T	2.410e^-4	0.73	SYNONYMOUS_CODING CG11127 DOWNSTREAM p47	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	10954080	3R_10954080_SNP [dm3] 3R_15128358_SNP [dm6]	T	G	2.412e^-4	0.73	INTRON CG42788
X	3548261	X_3548261_SNP [dm3] X_3654228_SNP [dm6]	A	G	2.423e^-4	0.732	INTRON AstA-R1
3L	22826268	3L_22826268_SNP [dm3] 3L_22833168_SNP [dm6]	G	C	2.429e^-4	0.732	UTR_5_PRIME jim
2R	1714520	2R_1714520_SNP [dm3] 2R_5827015_SNP [dm6]	C	T	2.439e^-4	0.734	INTRON dpr12
3L	2254257	3L_2254257_SNP [dm3] 3L_2254257_SNP [dm6]	G	C	2.449e^-4	0.736	INTRON CG1275	TF binding site mE1_TFBS_cad
3R	5877577	3R_5877577_SNP [dm3] 3R_10051855_SNP [dm6]	G	A	2.458e^-4	0.737	NON_SYNONYMOUS_CODING Fancl DOWNSTREAM CG3925 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9637295	2R_9637295_SNP [dm3] 2R_13749790_SNP [dm6]	G	A	2.460e^-4	0.737	DOWNSTREAM fas INTERGENIC
X	12631625	X_12631625_SNP [dm3] X_12737592_SNP [dm6]	G	A	2.473e^-4	0.74	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	12632094	X_12632094_SNP [dm3] X_12738061_SNP [dm6]	C	T	2.479e^-4	0.74	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16977490	2L_16977490_SNP [dm3] 2L_16977490_SNP [dm6]	A	C	2.491e^-4	0.743	INTRON beat-IIIb
2L	7104316	2L_7104316_SNP [dm3] 2L_7104316_SNP [dm6]	C	T	2.499e^-4	0.744	INTRON Pvf3
3L	11232173	3L_11232173_SNP [dm3] 3L_11239073_SNP [dm6]	G	A	2.502e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22093071	3R_22093071_SNP [dm3] 3R_26267349_SNP [dm6]	G	C	2.507e^-4	0.744	UPSTREAM CG6154 INTRON CG6154
2R	17868833	2R_17868833_SNP [dm3] 2R_21981328_SNP [dm6]	A	T	2.516e^-4	0.745	DOWNSTREAM Gr58a INTERGENIC
2R	19778533	2R_19778533_SNP [dm3] 2R_23891010_SNP [dm6]	G	A	2.526e^-4	0.747	SYNONYMOUS_CODING DNA-ligI UPSTREAM Dcp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2541048	3L_2541048_SNP [dm3] 3L_2541048_SNP [dm6]	T	C	2.531e^-4	0.747	UTR_5_PRIME Spn
2L	16940307	2L_16940307_SNP [dm3] 2L_16940307_SNP [dm6]	T	A	2.541e^-4	0.748	INTERGENIC
2L	1094399	2L_1094399_SNP [dm3] 2L_1094399_SNP [dm6]	A	T	2.546e^-4	0.748	INTRON CG4629
2L	12990797	2L_12990797_SNP [dm3] 2L_12990797_SNP [dm6]	A	T	2.551e^-4	0.748	INTERGENIC
3L	4440376	3L_4440376_INS [dm3] 3L_4440376_INS [dm6]	T	TT	2.556e^-4	0.748	INTERGENIC
3L	21358658	3L_21358658_SNP [dm3] 3L_21365558_SNP [dm6]	A	T	2.556e^-4	0.748	INTERGENIC
3L	11567729	3L_11567729_SNP [dm3] 3L_11574629_SNP [dm6]	G	A	2.560e^-4	0.748	UTR_5_PRIME CG33490 DOWNSTREAM CG33489
X	7543968	X_7543968_SNP [dm3] X_7649935_SNP [dm6]	T	A	2.565e^-4	0.748	INTRON ct
2R	17519288	2R_17519288_MNP [dm3] 2R_21631783_MNP [dm6]	GCT	TTG	2.566e^-4	0.748	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
X	4387660	X_4387660_SNP [dm3] X_4493627_SNP [dm6]	C	T	2.572e^-4	0.748	INTRON CR32773
2R	14580657	2R_14580657_SNP [dm3] 2R_18693152_SNP [dm6]	C	T	2.576e^-4	0.748	INTRON Sik3
2R	17519937	2R_17519937_SNP [dm3] 2R_21632432_SNP [dm6]	A	G	2.580e^-4	0.748	SYNONYMOUS_CODING CG15674 EXON CR42547
2L	11731813	2L_11731813_SNP [dm3] 2L_11731813_SNP [dm6]	G	A	2.584e^-4	0.748	INTERGENIC
2R	12708098	2R_12708098_SNP [dm3] 2R_16820593_SNP [dm6]	T	C	2.585e^-4	0.748	INTERGENIC
3R	14423691	3R_14423691_SNP [dm3] 3R_18597969_SNP [dm6]	G	A	2.592e^-4	0.748	SYNONYMOUS_CODING CG14304 UPSTREAM CG14305 INTRON qin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2548974	2L_2548974_SNP [dm3] 2L_2548974_SNP [dm6]	G	T	2.592e^-4	0.748	INTERGENIC
2L	6138529	2L_6138529_SNP [dm3] 2L_6138529_SNP [dm6]	T	C	2.595e^-4	0.748	UPSTREAM CG13991 DOWNSTREAM CR44824 INTERGENIC
X	912137	X_912137_INS [dm3] X_1018104_INS [dm6]	A	AGGGCATATTTCGTCAAA...	2.600e^-4	0.748	INTRON su_w[a]_ & 1 other	transposable element FlyBase
2R	10008020	2R_10008020_SNP [dm3] 2R_14120515_SNP [dm6]	G	A	2.608e^-4	0.748	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
2R	17096925	2R_17096925_INS [dm3] 2R_21209420_INS [dm6]	C	CC	2.612e^-4	0.748	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2R	9931856	2R_9931856_SNP [dm3] 2R_14044351_SNP [dm6]	C	G	2.616e^-4	0.748	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16096971	2R_16096971_SNP [dm3] 2R_20209466_SNP [dm6]	T	A	2.617e^-4	0.748	INTERGENIC
2L	9929671	2L_9929671_SNP [dm3] 2L_9929671_SNP [dm6]	G	A	2.625e^-4	0.749	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5926992	2L_5926992_SNP [dm3] 2L_5926992_SNP [dm6]	T	A	2.631e^-4	0.749	INTRON dsf
X	10478193	X_10478193_SNP [dm3] X_10584160_SNP [dm6]	G	A	2.633e^-4	0.749	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	415275	3L_415275_SNP [dm3] 3L_415275_SNP [dm6]	T	G	2.641e^-4	0.749	INTERGENIC	regulatory region REDfly_CRMs
X	7550922	X_7550922_SNP [dm3] X_7656889_SNP [dm6]	T	C	2.647e^-4	0.749	INTRON ct
2L	10780973	2L_10780973_SNP [dm3] 2L_10780973_SNP [dm6]	A	T	2.653e^-4	0.749	INTRON CG31869
2L	16728570	2L_16728570_SNP [dm3] 2L_16728570_SNP [dm6]	C	A	2.655e^-4	0.749	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	1898360	3L_1898360_SNP [dm3] 3L_1898360_SNP [dm6]	C	T	2.656e^-4	0.749	UPSTREAM CG1887 INTRON CG1887
3L	2331197	3L_2331197_SNP [dm3] 3L_2331197_SNP [dm6]	A	G	2.659e^-4	0.749	INTRON MsR1
2R	10006851	2R_10006851_SNP [dm3] 2R_14119346_SNP [dm6]	A	T	2.662e^-4	0.749	INTRON Prosap
2R	17809004	2R_17809004_SNP [dm3] 2R_21921499_SNP [dm6]	C	G	2.669e^-4	0.749	INTRON Fili	TF binding site mE1_TFBS_inv
3L	4417737	3L_4417737_SNP [dm3] 3L_4417737_SNP [dm6]	G	C	2.669e^-4	0.749	UPSTREAM DOR INTRON DOR
X	8127079	X_8127079_SNP [dm3] X_8233046_SNP [dm6]	G	A	2.675e^-4	0.75	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4348582	3L_4348582_SNP [dm3] 3L_4348582_SNP [dm6]	G	A	2.694e^-4	0.753	DOWNSTREAM CR45156 INTRON Cip4
2R	9931853	2R_9931853_SNP [dm3] 2R_14044348_SNP [dm6]	A	G	2.695e^-4	0.753	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3590025	3L_3590025_INS [dm3] 3L_3590025_INS [dm6]	G	GTGTTA	2.703e^-4	0.754	INTRON Eip63E
3R	14063356	3R_14063356_SNP [dm3] 3R_18237634_SNP [dm6]	T	C	2.705e^-4	0.754	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14037817	2R_14037817_SNP [dm3] 2R_18150312_SNP [dm6]	C	T	2.709e^-4	0.754	SYNONYMOUS_CODING CG5742	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	15946716	3L_15946716_DEL [dm3] 3L_15953616_DEL [dm6]	ATCTTTTTA	A	2.712e^-4	0.754	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5883457	2L_5883457_SNP [dm3] 2L_5883457_SNP [dm6]	C	T	2.722e^-4	0.755	UPSTREAM CG44574 DOWNSTREAM Sfp26Ac INTERGENIC
3L	13105160	3L_13105160_SNP [dm3] 3L_13112060_SNP [dm6]	A	T	2.732e^-4	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11628555	3L_11628555_SNP [dm3] 3L_11635455_SNP [dm6]	C	T	2.745e^-4	0.759	INTRON CG32091
2R	8928976	2R_8928976_DEL [dm3] 2R_13041471_DEL [dm6]	ATAT	A	2.761e^-4	0.762	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17924556	3L_17924556_SNP [dm3] 3L_17931456_SNP [dm6]	C	T	2.769e^-4	0.762	INTERGENIC
2L	16173274	2L_16173274_SNP [dm3] 2L_16173274_SNP [dm6]	A	G	2.774e^-4	0.762	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9276582	2L_9276582_SNP [dm3] 2L_9276582_SNP [dm6]	G	T	2.778e^-4	0.762	INTRON Ggamma30A
2R	20472127	2R_20472127_SNP [dm3] 2R_24584604_SNP [dm6]	A	G	2.779e^-4	0.762	INTRON pio
2L	2005089	2L_2005089_SNP [dm3] 2L_2005089_SNP [dm6]	A	C	2.782e^-4	0.762	INTRON CG33543
2L	13902847	2L_13902847_SNP [dm3] 2L_13902847_SNP [dm6]	C	G	2.793e^-4	0.762	SYNONYMOUS_CODING Smg5	TF binding site mE1_TFBS_sens
3L	22827648	3L_22827648_SNP [dm3] 3L_22834548_SNP [dm6]	G	T	2.812e^-4	0.762	INTRON jim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18146927	2R_18146927_SNP [dm3] 2R_22259422_SNP [dm6]	T	C	2.812e^-4	0.762	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	1094324	2L_1094324_SNP [dm3] 2L_1094324_SNP [dm6]	A	G	2.812e^-4	0.762	INTRON CG4629
3L	11626430	3L_11626430_SNP [dm3] 3L_11633330_SNP [dm6]	A	C	2.813e^-4	0.762	UPSTREAM CR45158 INTRON CG32091
2R	17519279	2R_17519279_SNP [dm3] 2R_21631774_SNP [dm6]	C	T	2.815e^-4	0.762	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	10757458	3L_10757458_DEL [dm3] 3L_10764358_DEL [dm6]	AATAA	A	2.817e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12990763	2L_12990763_SNP [dm3] 2L_12990763_SNP [dm6]	A	T	2.823e^-4	0.762	INTERGENIC
2L	2054681	2L_2054681_SNP [dm3] 2L_2054681_SNP [dm6]	A	C	2.831e^-4	0.762	SYNONYMOUS_CODING Or22c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15674762	3L_15674762_DEL [dm3] 3L_15681662_DEL [dm6]	TTA	T	2.833e^-4	0.762	UTR_3_PRIME CG7579 DOWNSTREAM CG7304
3L	13854964	3L_13854964_SNP [dm3] 3L_13861864_SNP [dm6]	C	T	2.839e^-4	0.762	INTRON CG8745	TF binding site mE1_TFBS_cad
3L	13854990	3L_13854990_SNP [dm3] 3L_13861890_SNP [dm6]	A	T	2.839e^-4	0.762	INTRON CG8745	TF binding site mE1_TFBS_cad
3L	2974914	3L_2974914_SNP [dm3] 3L_2974914_SNP [dm6]	C	T	2.841e^-4	0.762	DOWNSTREAM CR44530 INTERGENIC
X	3551173	X_3551173_SNP [dm3] X_3657140_SNP [dm6]	C	T	2.845e^-4	0.762	INTRON AstA-R1
3L	17020438	3L_17020438_SNP [dm3] 3L_17027338_SNP [dm6]	A	G	2.850e^-4	0.762	UPSTREAM CG7730 DOWNSTREAM Fit2 INTERGENIC
2R	7279069	2R_7279069_SNP [dm3] 2R_11391564_SNP [dm6]	C	A	2.851e^-4	0.762	INTRON sprt
3L	92766	3L_92766_SNP [dm3] 3L_92766_SNP [dm6]	C	A	2.853e^-4	0.762	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19777880	2R_19777880_INS [dm3] 2R_23890357_INS [dm6]	T	TACATGT	2.857e^-4	0.762	UPSTREAM DNA-ligI & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2990517	3L_2990517_SNP [dm3] 3L_2990517_SNP [dm6]	T	C	2.865e^-4	0.762	INTERGENIC
2L	6757899	2L_6757899_SNP [dm3] 2L_6757899_SNP [dm6]	G	T	2.869e^-4	0.762	UTR_3_PRIME CG11322
2L	11491071	2L_11491071_SNP [dm3] 2L_11491071_SNP [dm6]	G	C	2.876e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1252455	2L_1252455_SNP [dm3] 2L_1252455_SNP [dm6]	G	A	2.878e^-4	0.762	INTERGENIC
2L	57256	2L_57256_SNP [dm3] 2L_57256_SNP [dm6]	C	T	2.879e^-4	0.762	INTRON Cda5
2L	16741934	2L_16741934_SNP [dm3] 2L_16741934_SNP [dm6]	C	T	2.879e^-4	0.762	DOWNSTREAM LSm7 INTRON ChLD3
2L	7896566	2L_7896566_SNP [dm3] 2L_7896566_SNP [dm6]	A	C	2.881e^-4	0.762	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3108999	2L_3108999_SNP [dm3] 2L_3108999_SNP [dm6]	C	A	2.885e^-4	0.762	UPSTREAM toc & 1 other INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26036213	3R_26036213_SNP [dm3] 3R_30210491_SNP [dm6]	A	T	2.893e^-4	0.763	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3L	11306933	3L_11306933_SNP [dm3] 3L_11313833_SNP [dm6]	C	T	2.919e^-4	0.767	DOWNSTREAM CG7573 INTERGENIC
3L	11313782	3L_11313782_SNP [dm3] 3L_11320682_SNP [dm6]	T	A	2.921e^-4	0.767	UTR_3_PRIME CG6168
3L	11313784	3L_11313784_SNP [dm3] 3L_11320684_SNP [dm6]	A	T	2.921e^-4	0.767	UTR_3_PRIME CG6168
2L	6124716	2L_6124716_SNP [dm3] 2L_6124716_SNP [dm6]	G	A	2.934e^-4	0.768	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	14048141	2R_14048141_SNP [dm3] 2R_18160636_SNP [dm6]	C	T	2.937e^-4	0.768	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	2548950	2L_2548950_SNP [dm3] 2L_2548950_SNP [dm6]	C	T	2.938e^-4	0.768	INTERGENIC
3L	16823707	3L_16823707_SNP [dm3] 3L_16830607_SNP [dm6]	A	T	2.939e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12990749	2L_12990749_SNP [dm3] 2L_12990749_SNP [dm6]	T	C	2.957e^-4	0.768	INTERGENIC
3L	13080240	3L_13080240_SNP [dm3] 3L_13087140_SNP [dm6]	C	A	2.957e^-4	0.768	UPSTREAM CR45749 INTRON CG17300
2L	11724547	2L_11724547_SNP [dm3] 2L_11724547_SNP [dm6]	C	A	2.958e^-4	0.768	INTERGENIC
3R	13271592	3R_13271592_SNP [dm3] 3R_17445870_SNP [dm6]	A	G	2.962e^-4	0.768	DOWNSTREAM Eh INTRON CG5873
2L	13774437	2L_13774437_SNP [dm3] 2L_13774437_SNP [dm6]	G	T	2.964e^-4	0.768	UTR_3_PRIME CG9008 DOWNSTREAM TM9SF4 & 1 other
3L	16454625	3L_16454625_SNP [dm3] 3L_16461525_SNP [dm6]	T	G	2.979e^-4	0.768	INTRON CG33158
X	7455799	X_7455799_SNP [dm3] X_7561766_SNP [dm6]	C	A	2.989e^-4	0.768	INTERGENIC
2L	20099458	2L_20099458_DEL [dm3] 2L_20099458_DEL [dm6]	AA	A	2.996e^-4	0.768	INTRON Kua	TF binding site BDTNP1_TFBS_dl
2R	4130498	2R_4130498_SNP [dm3] 2R_8242993_SNP [dm6]	T	A	2.996e^-4	0.768	UPSTREAM CR44276 EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10744498	2R_10744498_SNP [dm3] 2R_14856993_SNP [dm6]	G	C	2.999e^-4	0.768	SYNONYMOUS_CODING HPS1 DOWNSTREAM CG33506	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2094309	X_2094309_SNP [dm3] X_2200276_SNP [dm6]	G	A	3.011e^-4	0.768	SYNONYMOUS_CODING Mct1 DOWNSTREAM CR43637	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	953501	X_953501_SNP [dm3] X_1059468_SNP [dm6]	A	G	3.012e^-4	0.768	INTRON CR44779
3L	399064	3L_399064_SNP [dm3] 3L_399064_SNP [dm6]	T	A	3.015e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20400911	2R_20400911_SNP [dm3] 2R_24513388_SNP [dm6]	T	C	3.022e^-4	0.768	INTRON Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3553060	X_3553060_SNP [dm3] X_3659027_SNP [dm6]	C	T	3.031e^-4	0.768	INTRON AstA-R1
3L	9113481	3L_9113481_SNP [dm3] 3L_9120381_SNP [dm6]	A	T	3.031e^-4	0.768	INTRON bol
2R	11442766	2R_11442766_SNP [dm3] 2R_15555261_SNP [dm6]	C	G	3.037e^-4	0.768	UPSTREAM CG12963 INTERGENIC
3L	11243505	3L_11243505_SNP [dm3] 3L_11250405_SNP [dm6]	A	C	3.038e^-4	0.768	DOWNSTREAM CR44716 EXON CR44717	TF binding site mE1_TFBS_inv
3L	11275799	3L_11275799_SNP [dm3] 3L_11282699_SNP [dm6]	G	A	3.039e^-4	0.768	INTERGENIC
3R	10951971	3R_10951971_SNP [dm3] 3R_15126249_SNP [dm6]	G	A	3.041e^-4	0.768	INTRON CG42788
3L	11153856	3L_11153856_SNP [dm3] 3L_11160756_SNP [dm6]	T	C	3.045e^-4	0.768	INTRON CG32082
3R	12710464	3R_12710464_SNP [dm3] 3R_16884742_SNP [dm6]	C	T	3.051e^-4	0.768	INTRON iab-8
3R	20933519	3R_20933519_SNP [dm3] 3R_25107797_SNP [dm6]	G	A	3.062e^-4	0.768	SYNONYMOUS_CODING CG34027
2R	10985612	2R_10985612_SNP [dm3] 2R_15098107_SNP [dm6]	C	A	3.072e^-4	0.768	INTERGENIC
3L	2712594	3L_2712594_SNP [dm3] 3L_2712594_SNP [dm6]	T	G	3.072e^-4	0.768	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9448201	X_9448201_SNP [dm3] X_9554168_SNP [dm6]	C	T	3.075e^-4	0.768	UPSTREAM RpS28b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	16749490	2L_16749490_SNP [dm3] 2L_16749490_SNP [dm6]	A	T	3.087e^-4	0.768	NON_SYNONYMOUS_CODING CG17912 UTR_3_PRIME CG17912 DOWNSTREAM CG17912	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2R	6874004	2R_6874004_DEL [dm3] 2R_10986499_DEL [dm6]	GG	G	3.100e^-4	0.768	INTRON luna
2R	13505551	2R_13505551_SNP [dm3] 2R_17618046_SNP [dm6]	G	T	3.101e^-4	0.768	UPSTREAM CG44403 INTRON CG10936
3L	18469170	3L_18469170_SNP [dm3] 3L_18476070_SNP [dm6]	C	T	3.103e^-4	0.768	DOWNSTREAM CR44672 INTERGENIC
2R	10792927	2R_10792927_SNP [dm3] 2R_14905422_SNP [dm6]	C	T	3.103e^-4	0.768	SYNONYMOUS_CODING CG10249	TF binding site mE1_TFBS_chinmo
2R	16474855	2R_16474855_SNP [dm3] 2R_20587350_SNP [dm6]	C	A	3.104e^-4	0.768	UPSTREAM bl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2539210	3L_2539210_SNP [dm3] 3L_2539210_SNP [dm6]	G	A	3.106e^-4	0.768	INTRON Spn
2L	12301348	2L_12301348_SNP [dm3] 2L_12301348_SNP [dm6]	A	T	3.110e^-4	0.768	INTRON aret
2L	19211488	2L_19211488_INS [dm3] 2L_19211488_INS [dm6]	A	AA	3.110e^-4	0.768	INTERGENIC
2R	9634181	2R_9634181_SNP [dm3] 2R_13746676_SNP [dm6]	T	C	3.111e^-4	0.768	SYNONYMOUS_CODING fas	TF binding site mE1_TFBS_cad
X	14613187	X_14613187_SNP [dm3] X_14719154_SNP [dm6]	C	T	3.112e^-4	0.768	UPSTREAM hog INTRON NetB
2R	17519286	2R_17519286_SNP [dm3] 2R_21631781_SNP [dm6]	A	T	3.113e^-4	0.768	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
3L	13080563	3L_13080563_SNP [dm3] 3L_13087463_SNP [dm6]	A	G	3.120e^-4	0.768	UPSTREAM CR45749 & 1 other INTERGENIC
2R	19116810	2R_19116810_SNP [dm3] 2R_23229287_SNP [dm6]	T	G	3.121e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_cad
X	21935975	X_21935975_INS [dm3] X_22534139_INS [dm6]	C	CT	3.122e^-4	0.768	UTR_3_PRIME S6kII DOWNSTREAM CG17598 & 1 other INTRON CG17600
2R	13919897	2R_13919897_SNP [dm3] 2R_18032392_SNP [dm6]	C	A	3.123e^-4	0.768	INTERGENIC	transposable element FlyBase
X	10087138	X_10087138_SNP [dm3] X_10193105_SNP [dm6]	A	T	3.139e^-4	0.768	UTR_3_PRIME CG43902 INTRON CR44894
2L	6943855	2L_6943855_SNP [dm3] 2L_6943855_SNP [dm6]	T	A	3.140e^-4	0.768	UTR_3_PRIME CG10158	TF binding site mE1_TFBS_cad
2L	16173268	2L_16173268_SNP [dm3] 2L_16173268_SNP [dm6]	T	A	3.142e^-4	0.768	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	17056344	3L_17056344_SNP [dm3] 3L_17063244_SNP [dm6]	T	C	3.143e^-4	0.768	UTR_3_PRIME Rbp6
2L	6978798	2L_6978798_SNP [dm3] 2L_6978798_SNP [dm6]	A	G	3.146e^-4	0.768	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7008417	2L_7008417_SNP [dm3] 2L_7008417_SNP [dm6]	T	G	3.158e^-4	0.768	UTR_5_PRIME uif INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	10008086	2R_10008086_SNP [dm3] 2R_14120581_SNP [dm6]	T	G	3.158e^-4	0.768	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
3R	7894099	3R_7894099_SNP [dm3] 3R_12068377_SNP [dm6]	C	T	3.172e^-4	0.768	UTR_3_PRIME CG14741
2L	12990668	2L_12990668_SNP [dm3] 2L_12990668_SNP [dm6]	A	T	3.175e^-4	0.768	INTERGENIC
2L	2424778	2L_2424778_SNP [dm3] 2L_2424778_SNP [dm6]	A	G	3.184e^-4	0.768	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	3003887	3L_3003887_SNP [dm3] 3L_3003887_SNP [dm6]	T	G	3.186e^-4	0.768	INTRON FMRFaR
3L	4422877	3L_4422877_SNP [dm3] 3L_4422877_SNP [dm6]	T	G	3.195e^-4	0.768	INTRON CG15020
2R	3333325	2R_3333325_SNP [dm3] 2R_7445820_SNP [dm6]	G	T	3.203e^-4	0.768	UPSTREAM kappaB-Ras & 1 other DOWNSTREAM fa2h INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	11628693	3L_11628693_SNP [dm3] 3L_11635593_SNP [dm6]	A	T	3.215e^-4	0.768	INTRON CG32091
2L	12990690	2L_12990690_SNP [dm3] 2L_12990690_SNP [dm6]	T	A	3.216e^-4	0.768	INTERGENIC
3L	21847340	3L_21847340_SNP [dm3] 3L_21854240_SNP [dm6]	T	G	3.222e^-4	0.768	UPSTREAM tRNA:CR32449 INTRON mub
2L	4340720	2L_4340720_SNP [dm3] 2L_4340720_SNP [dm6]	A	G	3.225e^-4	0.768	INTRON Atet
3L	867238	3L_867238_SNP [dm3] 3L_867238_SNP [dm6]	C	T	3.230e^-4	0.768	INTRON CG12502	TF binding site BDTNP1_TFBS_dl
2L	2330681	2L_2330681_SNP [dm3] 2L_2330681_SNP [dm6]	T	C	3.235e^-4	0.768	UTR_5_PRIME CG9967 INTRON CG9967 & 1 other
3L	6274396	3L_6274396_SNP [dm3] 3L_6281296_SNP [dm6]	G	C	3.235e^-4	0.768	INTERGENIC
2R	9900313	2R_9900313_SNP [dm3] 2R_14012808_SNP [dm6]	C	T	3.244e^-4	0.768	INTRON mam
2R	2934444	2R_2934444_SNP [dm3] 2R_7046939_SNP [dm6]	G	A	3.245e^-4	0.768	INTRON Tsp42El	transposable element FlyBase
2L	9929764	2L_9929764_SNP [dm3] 2L_9929764_SNP [dm6]	A	G	3.251e^-4	0.768	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9419382	2R_9419382_SNP [dm3] 2R_13531877_SNP [dm6]	T	C	3.251e^-4	0.768	INTRON Vmat
3L	2355880	3L_2355880_SNP [dm3] 3L_2355880_SNP [dm6]	G	A	3.251e^-4	0.768	INTERGENIC
2L	16742460	2L_16742460_SNP [dm3] 2L_16742460_SNP [dm6]	C	T	3.265e^-4	0.768	UTR_3_PRIME ChLD3 & 1 other UPSTREAM CG17912 DOWNSTREAM LSm7 INTRON LSm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13900815	3R_13900815_SNP [dm3] 3R_18075093_SNP [dm6]	C	T	3.265e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16855077	2L_16855077_INS [dm3] 2L_16855077_INS [dm6]	C	CCAAAAG	3.271e^-4	0.768	INTRON CG31809	transposable element FlyBase
3L	15946838	3L_15946838_SNP [dm3] 3L_15953738_SNP [dm6]	T	A	3.274e^-4	0.768	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6529660	2L_6529660_SNP [dm3] 2L_6529660_SNP [dm6]	G	A	3.275e^-4	0.768	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11627618	3L_11627618_SNP [dm3] 3L_11634518_SNP [dm6]	G	C	3.277e^-4	0.768	INTRON CG32091
2L	2332512	2L_2332512_SNP [dm3] 2L_2332512_SNP [dm6]	A	T	3.286e^-4	0.768	INTRON CG9967 & 1 other
3R	21295851	3R_21295851_SNP [dm3] 3R_25470129_SNP [dm6]	C	T	3.292e^-4	0.768	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
3L	785243	3L_785243_SNP [dm3] 3L_785243_SNP [dm6]	C	T	3.295e^-4	0.768	INTERGENIC
2L	6021405	2L_6021405_SNP [dm3] 2L_6021405_SNP [dm6]	C	T	3.296e^-4	0.768	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1865799	3R_1865799_DEL [dm3] 3R_6040077_DEL [dm6]	GA	G	3.297e^-4	0.768	INTERGENIC
3L	11238832	3L_11238832_SNP [dm3] 3L_11245732_SNP [dm6]	A	G	3.300e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7901730	3L_7901730_SNP [dm3] 3L_7908630_SNP [dm6]	T	G	3.302e^-4	0.768	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18527395	2R_18527395_SNP [dm3] 2R_22639890_SNP [dm6]	T	C	3.316e^-4	0.768	DOWNSTREAM RpS24 INTRON CG3732	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13765949	2R_13765949_SNP [dm3] 2R_17878444_SNP [dm6]	G	A	3.318e^-4	0.768	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
2R	6322543	2R_6322543_DEL [dm3] 2R_10435038_DEL [dm6]	TT	T	3.323e^-4	0.768	INTRON RanBPM
2L	12151656	2L_12151656_SNP [dm3] 2L_12151656_SNP [dm6]	T	A	3.324e^-4	0.768	INTRON CG31760
2R	11439788	2R_11439788_SNP [dm3] 2R_15552283_SNP [dm6]	T	C	3.324e^-4	0.768	INTERGENIC
X	4328840	X_4328840_SNP [dm3] X_4434807_SNP [dm6]	A	T	3.325e^-4	0.768	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	5833971	3R_5833971_SNP [dm3] 3R_10008249_SNP [dm6]	A	G	3.334e^-4	0.768	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical
2R	14966072	2R_14966072_SNP [dm3] 2R_19078567_SNP [dm6]	A	G	3.335e^-4	0.768	INTRON 5-HT1A
2L	1011191	2L_1011191_SNP [dm3] 2L_1011191_SNP [dm6]	C	A	3.336e^-4	0.768	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
2L	4493770	2L_4493770_SNP [dm3] 2L_4493770_SNP [dm6]	G	T	3.337e^-4	0.768	INTRON dp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2424634	2L_2424634_SNP [dm3] 2L_2424634_SNP [dm6]	C	T	3.342e^-4	0.768	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	6015951	2L_6015951_SNP [dm3] 2L_6015951_SNP [dm6]	G	A	3.343e^-4	0.768	INTRON H2.0
3R	20569722	3R_20569722_SNP [dm3] 3R_24744000_SNP [dm6]	C	T	3.345e^-4	0.768	SPLICE_SITE_REGION tok INTRON tok	TF binding site mE1_TFBS_cad
2L	9872940	2L_9872940_SNP [dm3] 2L_9872940_SNP [dm6]	T	C	3.348e^-4	0.768	INTRON nAChRalpha6
2L	16728566	2L_16728566_SNP [dm3] 2L_16728566_SNP [dm6]	G	T	3.350e^-4	0.768	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	9639012	2R_9639012_SNP [dm3] 2R_13751507_SNP [dm6]	G	A	3.352e^-4	0.768	INTERGENIC	transposable element FlyBase
3L	18401842	3L_18401842_SNP [dm3] 3L_18408742_SNP [dm6]	G	C	3.353e^-4	0.768	INTERGENIC
2L	16728583	2L_16728583_SNP [dm3] 2L_16728583_SNP [dm6]	G	T	3.355e^-4	0.768	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	4433765	3L_4433765_SNP [dm3] 3L_4433765_SNP [dm6]	G	A	3.356e^-4	0.768	SYNONYMOUS_CODING nAChRbeta1
3L	312396	3L_312396_SNP [dm3] 3L_312396_SNP [dm6]	A	G	3.365e^-4	0.768	UPSTREAM fwd INTRON fwd
2L	54273	2L_54273_SNP [dm3] 2L_54273_SNP [dm6]	A	G	3.368e^-4	0.768	INTRON Cda5
2L	11676745	2L_11676745_SNP [dm3] 2L_11676745_SNP [dm6]	G	A	3.369e^-4	0.768	INTERGENIC
2L	11491050	2L_11491050_SNP [dm3] 2L_11491050_SNP [dm6]	T	A	3.374e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17925729	3L_17925729_SNP [dm3] 3L_17932629_SNP [dm6]	G	A	3.379e^-4	0.768	INTERGENIC
3L	480131	3L_480131_SNP [dm3] 3L_480131_SNP [dm6]	T	C	3.380e^-4	0.768	INTRON klar
3L	7497179	3L_7497179_DEL [dm3] 3L_7504079_DEL [dm6]	TT	T	3.381e^-4	0.768	INTERGENIC
X	7261834	X_7261834_SNP [dm3] X_7367801_SNP [dm6]	G	A	3.381e^-4	0.768	INTRON CG1677 & 1 other
X	7745874	X_7745874_SNP [dm3] X_7851841_SNP [dm6]	G	A	3.382e^-4	0.768	DOWNSTREAM CG10920 INTERGENIC
2R	17278607	2R_17278607_SNP [dm3] 2R_21391102_SNP [dm6]	C	T	3.384e^-4	0.768	NON_SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2539520	3L_2539520_SNP [dm3] 3L_2539520_SNP [dm6]	A	C	3.396e^-4	0.769	INTRON Spn
X	3548219	X_3548219_SNP [dm3] X_3654186_SNP [dm6]	G	A	3.403e^-4	0.769	INTRON AstA-R1
3L	11242573	3L_11242573_SNP [dm3] 3L_11249473_SNP [dm6]	G	A	3.420e^-4	0.769	DOWNSTREAM CR44716 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	25616003	3R_25616003_SNP [dm3] 3R_29790281_SNP [dm6]	G	A	3.421e^-4	0.769	SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
3R	24667125	3R_24667125_SNP [dm3] 3R_28841403_SNP [dm6]	T	A	3.422e^-4	0.769	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2R	11442367	2R_11442367_SNP [dm3] 2R_15554862_SNP [dm6]	C	T	3.438e^-4	0.769	UPSTREAM CG12963 INTERGENIC
3L	5019543	3L_5019543_SNP [dm3] 3L_5019543_SNP [dm6]	C	T	3.440e^-4	0.769	INTRON Con
2L	16741876	2L_16741876_SNP [dm3] 2L_16741876_SNP [dm6]	G	A	3.446e^-4	0.769	SYNONYMOUS_CODING ChLD3 DOWNSTREAM LSm7
2L	16741926	2L_16741926_SNP [dm3] 2L_16741926_SNP [dm6]	C	T	3.446e^-4	0.769	DOWNSTREAM LSm7 INTRON ChLD3
2L	16728567	2L_16728567_SNP [dm3] 2L_16728567_SNP [dm6]	A	G	3.447e^-4	0.769	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	861008	3R_861008_SNP [dm3] 3R_5035286_SNP [dm6]	T	C	3.447e^-4	0.769	INTERGENIC
2R	17520129	2R_17520129_SNP [dm3] 2R_21632624_SNP [dm6]	A	T	3.448e^-4	0.769	INTRON CG15674 EXON CR42547
2L	3846174	2L_3846174_SNP [dm3] 2L_3846174_SNP [dm6]	C	G	3.451e^-4	0.769	UPSTREAM CR44983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10517407	2R_10517407_SNP [dm3] 2R_14629902_SNP [dm6]	T	C	3.453e^-4	0.769	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12439285	2R_12439285_INS [dm3] 2R_16551780_INS [dm6]	C	CC	3.459e^-4	0.769	UPSTREAM Syn2 INTERGENIC
3L	1851606	3L_1851606_SNP [dm3] 3L_1851606_SNP [dm6]	T	G	3.460e^-4	0.769	INTRON CG13936	TF binding site mE1_TFBS_cad
3L	8058616	3L_8058616_SNP [dm3] 3L_8065516_SNP [dm6]	C	T	3.473e^-4	0.769	DOWNSTREAM tRNA:CR32361 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	15946808	3L_15946808_INS [dm3] 3L_15953708_INS [dm6]	T	ACCCTGA	3.476e^-4	0.769	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3827080	3L_3827080_SNP [dm3] 3L_3827080_SNP [dm6]	C	A	3.477e^-4	0.769	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	61956	3L_61956_SNP [dm3] 3L_61956_SNP [dm6]	G	T	3.479e^-4	0.769	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3022618	3L_3022618_SNP [dm3] 3L_3022618_SNP [dm6]	C	G	3.479e^-4	0.769	INTERGENIC
2R	10028575	2R_10028575_SNP [dm3] 2R_14141070_SNP [dm6]	G	T	3.502e^-4	0.773	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	2400315	3L_2400315_INS [dm3] 3L_2400315_INS [dm6]	A	ACGGCCTA	3.504e^-4	0.773	UPSTREAM CG45186 INTRON CG45186
3L	16885830	3L_16885830_SNP [dm3] 3L_16892730_SNP [dm6]	T	C	3.507e^-4	0.773	INTRON Lmpt
X	12631649	X_12631649_SNP [dm3] X_12737616_SNP [dm6]	C	G	3.522e^-4	0.774	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	3359606	3R_3359606_SNP [dm3] 3R_7533884_SNP [dm6]	T	C	3.526e^-4	0.774	UTR_3_PRIME alpha-Est5 DOWNSTREAM alpha-Est5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2424787	2L_2424787_DEL [dm3] 2L_2424787_DEL [dm6]	GTGGACTGA	G	3.532e^-4	0.774	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	11497054	2L_11497054_SNP [dm3] 2L_11497054_SNP [dm6]	A	G	3.547e^-4	0.774	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
2R	10028265	2R_10028265_SNP [dm3] 2R_14140760_SNP [dm6]	T	A	3.548e^-4	0.774	UTR_5_PRIME Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
X	3552654	X_3552654_SNP [dm3] X_3658621_SNP [dm6]	G	C	3.548e^-4	0.774	INTRON AstA-R1
3R	5737849	3R_5737849_SNP [dm3] 3R_9912127_SNP [dm6]	T	G	3.548e^-4	0.774	INTRON Glut4EF
2R	6259733	2R_6259733_SNP [dm3] 2R_10372228_SNP [dm6]	G	A	3.549e^-4	0.774	INTRON CG42732	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11629712	3L_11629712_SNP [dm3] 3L_11636612_SNP [dm6]	C	G	3.553e^-4	0.774	INTRON CG32091
3R	6843108	3R_6843108_INS [dm3] 3R_11017386_INS [dm6]	C	CTACTTACACTACTTCTTTG...	3.557e^-4	0.774	INTRON CG34114
3L	8415582	3L_8415582_SNP [dm3] 3L_8422482_SNP [dm6]	A	G	3.560e^-4	0.774	UPSTREAM CG32354 INTERGENIC
X	2651930	X_2651930_SNP [dm3] X_2757897_SNP [dm6]	G	A	3.576e^-4	0.774	INTRON kirre
3L	11838107	3L_11838107_SNP [dm3] 3L_11845007_SNP [dm6]	T	C	3.577e^-4	0.774	INTERGENIC
3L	10918219	3L_10918219_SNP [dm3] 3L_10925119_SNP [dm6]	A	G	3.579e^-4	0.774	INTERGENIC
X	7261605	X_7261605_SNP [dm3] X_7367572_SNP [dm6]	A	G	3.585e^-4	0.774	INTRON CG1677 & 1 other
3L	8237336	3L_8237336_SNP [dm3] 3L_8244236_SNP [dm6]	G	A	3.585e^-4	0.774	INTRON Dscam4
X	12631858	X_12631858_SNP [dm3] X_12737825_SNP [dm6]	T	C	3.589e^-4	0.774	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	10952215	3R_10952215_SNP [dm3] 3R_15126493_SNP [dm6]	C	G	3.591e^-4	0.774	INTRON CG42788
2L	2267765	2L_2267765_SNP [dm3] 2L_2267765_SNP [dm6]	A	G	3.594e^-4	0.774	DOWNSTREAM CG17242 INTERGENIC
3R	25799572	3R_25799572_SNP [dm3] 3R_29973850_SNP [dm6]	C	T	3.594e^-4	0.774	INTERGENIC
3L	11051831	3L_11051831_SNP [dm3] 3L_11058731_SNP [dm6]	C	T	3.607e^-4	0.775	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
3L	11838125	3L_11838125_SNP [dm3] 3L_11845025_SNP [dm6]	C	T	3.607e^-4	0.775	INTERGENIC
3L	8327553	3L_8327553_SNP [dm3] 3L_8334453_SNP [dm6]	A	G	3.621e^-4	0.777	INTERGENIC
3L	11344251	3L_11344251_SNP [dm3] 3L_11351151_SNP [dm6]	T	C	3.625e^-4	0.777	INTERGENIC
3R	23866013	3R_23866013_SNP [dm3] 3R_28040291_SNP [dm6]	G	C	3.635e^-4	0.777	INTRON CG34362
3L	9113482	3L_9113482_SNP [dm3] 3L_9120382_SNP [dm6]	A	T	3.642e^-4	0.777	INTRON bol
X	21874790	X_21874790_SNP [dm3] X_22472954_SNP [dm6]	C	A	3.644e^-4	0.777	UPSTREAM CG14613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	7135319	2L_7135319_SNP [dm3] 2L_7135319_SNP [dm6]	C	G	3.648e^-4	0.777	INTRON Pvf3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10218866	2R_10218866_INS [dm3] 2R_14331361_INS [dm6]	A	AAAA	3.657e^-4	0.777	INTRON Shroom
3R	6053452	3R_6053452_SNP [dm3] 3R_10227730_SNP [dm6]	G	A	3.658e^-4	0.777	INTRON CG42795
2L	11490208	2L_11490208_SNP [dm3] 2L_11490208_SNP [dm6]	A	T	3.661e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6293209	2L_6293209_SNP [dm3] 2L_6293209_SNP [dm6]	A	G	3.661e^-4	0.777	INTRON Ddr
X	9448310	X_9448310_SNP [dm3] X_9554277_SNP [dm6]	A	C	3.664e^-4	0.777	UPSTREAM RpS28b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26860629	3R_26860629_SNP [dm3] 3R_31034907_SNP [dm6]	G	A	3.672e^-4	0.778	UPSTREAM CG33773 INTERGENIC
X	12094699	X_12094699_DEL [dm3] X_12200666_DEL [dm6]	AA	A	3.681e^-4	0.778	INTRON Ten-a
3L	2539185	3L_2539185_SNP [dm3] 3L_2539185_SNP [dm6]	A	G	3.683e^-4	0.778	INTRON Spn
2R	10118548	2R_10118548_SNP [dm3] 2R_14231043_SNP [dm6]	T	C	3.686e^-4	0.778	SYNONYMOUS_CODING Opa1 UTR_3_PRIME Opa1 DOWNSTREAM CG8468	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23504665	3R_23504665_DEL [dm3] 3R_27678943_DEL [dm6]	TTTTCTATTGTTTACAAGCG...	T	3.693e^-4	0.778	UTR_3_PRIME CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	16266993	3L_16266993_SNP [dm3] 3L_16273893_SNP [dm6]	G	C	3.694e^-4	0.778	DOWNSTREAM CG13066 INTERGENIC
2L	16789937	2L_16789937_SNP [dm3] 2L_16789937_SNP [dm6]	G	C	3.703e^-4	0.778	INTRON Cyt-b5-r
X	7543969	X_7543969_SNP [dm3] X_7649936_SNP [dm6]	C	T	3.707e^-4	0.778	INTRON ct
X	10099541	X_10099541_INS [dm3] X_10205508_INS [dm6]	C	CCAACTTTGTTTTGTAAGAA...	3.708e^-4	0.778	UTR_3_PRIME CG15309 DOWNSTREAM CR32690 INTRON CR44894
3L	3954740	3L_3954740_SNP [dm3] 3L_3954740_SNP [dm6]	A	C	3.712e^-4	0.778	UTR_3_PRIME CG12605
2R	9900133	2R_9900133_SNP [dm3] 2R_14012628_SNP [dm6]	G	T	3.719e^-4	0.778	INTRON mam
3L	3956951	3L_3956951_SNP [dm3] 3L_3956951_SNP [dm6]	A	G	3.721e^-4	0.778	UTR_3_PRIME CG12605
3L	6109392	3L_6109392_SNP [dm3] 3L_6116292_SNP [dm6]	T	C	3.722e^-4	0.778	INTRON Ets65A	TF binding site mE1_TFBS_Kr
2R	7540622	2R_7540622_SNP [dm3] 2R_11653117_SNP [dm6]	C	T	3.741e^-4	0.779	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2L	2424676	2L_2424676_DEL [dm3] 2L_2424676_DEL [dm6]	AA	A	3.745e^-4	0.779	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	2424785	2L_2424785_SNP [dm3] 2L_2424785_SNP [dm6]	A	G	3.745e^-4	0.779	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	11491262	2L_11491262_SNP [dm3] 2L_11491262_SNP [dm6]	A	G	3.756e^-4	0.779	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12632649	X_12632649_DEL [dm3] X_12738616_DEL [dm6]	ATAA	A	3.759e^-4	0.779	INTRON Smr	TF binding site BDTNP1_TFBS_dl
X	8145840	X_8145840_SNP [dm3] X_8251807_SNP [dm6]	A	T	3.762e^-4	0.779	UPSTREAM ND75 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15124570	2L_15124570_SNP [dm3] 2L_15124570_SNP [dm6]	G	A	3.763e^-4	0.779	INTERGENIC
2R	12478180	2R_12478180_SNP [dm3] 2R_16590675_SNP [dm6]	G	A	3.772e^-4	0.779	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10780139	2L_10780139_SNP [dm3] 2L_10780139_SNP [dm6]	T	A	3.773e^-4	0.779	INTRON CG31869
X	19084285	X_19084285_SNP [dm3] X_19190252_SNP [dm6]	G	T	3.778e^-4	0.779	UTR_5_PRIME HP1D3csd DOWNSTREAM Mec2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	12990754	2L_12990754_SNP [dm3] 2L_12990754_SNP [dm6]	T	C	3.779e^-4	0.779	INTERGENIC
2L	10130310	2L_10130310_SNP [dm3] 2L_10130310_SNP [dm6]	T	G	3.782e^-4	0.779	INTRON CG44153
2L	18992159	2L_18992159_SNP [dm3] 2L_18992159_SNP [dm6]	G	A	3.782e^-4	0.779	UTR_3_PRIME CG15169	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14624372	X_14624372_SNP [dm3] X_14730339_SNP [dm6]	G	T	3.783e^-4	0.779	INTRON NetB
X	16102319	X_16102319_SNP [dm3] X_16208286_SNP [dm6]	A	C	3.793e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12344937	3L_12344937_SNP [dm3] 3L_12351837_SNP [dm6]	A	G	3.804e^-4	0.781	UPSTREAM CrzR INTERGENIC
2R	7792475	2R_7792475_SNP [dm3] 2R_11904970_SNP [dm6]	C	T	3.808e^-4	0.781	SYNONYMOUS_CODING CG13183	TF binding site mE1_TFBS_inv
X	13376872	X_13376872_SNP [dm3] X_13482839_SNP [dm6]	C	A	3.811e^-4	0.781	INTRON Neto
X	19797292	X_19797292_SNP [dm3] X_19903259_SNP [dm6]	G	A	3.822e^-4	0.783	NON_SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_chinmo
2L	13707083	2L_13707083_SNP [dm3] 2L_13707083_SNP [dm6]	A	T	3.828e^-4	0.783	INTRON CG31814
3L	2539162	3L_2539162_SNP [dm3] 3L_2539162_SNP [dm6]	T	A	3.831e^-4	0.783	INTRON Spn
3L	3794654	3L_3794654_SNP [dm3] 3L_3794654_SNP [dm6]	A	C	3.841e^-4	0.784	START_GAINED CG32264 UTR_5_PRIME CG32264 INTRON CG32264
2L	11693202	2L_11693202_SNP [dm3] 2L_11693202_SNP [dm6]	T	C	3.844e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17101889	2L_17101889_SNP [dm3] 2L_17101889_SNP [dm6]	G	C	3.852e^-4	0.784	INTERGENIC
3L	11624408	3L_11624408_SNP [dm3] 3L_11631308_SNP [dm6]	G	T	3.864e^-4	0.784	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
2R	18741391	2R_18741391_SNP [dm3] 2R_22853868_SNP [dm6]	G	T	3.865e^-4	0.784	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19116794	2R_19116794_SNP [dm3] 2R_23229271_SNP [dm6]	A	G	3.867e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2948298	3L_2948298_SNP [dm3] 3L_2948298_SNP [dm6]	A	C	3.870e^-4	0.784	INTRON Shab
2L	11483025	2L_11483025_SNP [dm3] 2L_11483025_SNP [dm6]	A	T	3.872e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10720383	2R_10720383_SNP [dm3] 2R_14832878_SNP [dm6]	G	A	3.873e^-4	0.784	UTR_5_PRIME CG10205
2R	10006869	2R_10006869_SNP [dm3] 2R_14119364_SNP [dm6]	C	G	3.879e^-4	0.784	INTRON Prosap
3R	2428055	3R_2428055_SNP [dm3] 3R_6602333_SNP [dm6]	T	C	3.881e^-4	0.784	DOWNSTREAM CG31482 INTERGENIC
X	17328248	X_17328248_SNP [dm3] X_17434215_SNP [dm6]	A	T	3.897e^-4	0.785	INTRON CG12994
2R	10736149	2R_10736149_SNP [dm3] 2R_14848644_SNP [dm6]	A	C	3.902e^-4	0.785	UTR_3_PRIME SMC2 UPSTREAM CG10209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11153868	3L_11153868_SNP [dm3] 3L_11160768_SNP [dm6]	G	A	3.903e^-4	0.785	INTRON CG32082
2R	12339500	2R_12339500_SNP [dm3] 2R_16451995_SNP [dm6]	T	C	3.911e^-4	0.785	INTERGENIC
2R	17400703	2R_17400703_DEL [dm3] 2R_21513198_DEL [dm6]	CC	C	3.911e^-4	0.785	DOWNSTREAM MESK2 INTRON MESK2
3L	6283937	3L_6283937_SNP [dm3] 3L_6290837_SNP [dm6]	G	A	3.915e^-4	0.785	INTERGENIC
3L	4345828	3L_4345828_SNP [dm3] 3L_4345828_SNP [dm6]	C	G	3.940e^-4	0.787	UPSTREAM Cip4 INTRON Cip4 EXON CR45156
2R	9961348	2R_9961348_SNP [dm3] 2R_14073843_SNP [dm6]	T	C	3.942e^-4	0.787	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7279038	2R_7279038_SNP [dm3] 2R_11391533_SNP [dm6]	G	A	3.942e^-4	0.787	INTRON sprt
3L	2866178	3L_2866178_SNP [dm3] 3L_2866178_SNP [dm6]	A	G	3.944e^-4	0.787	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11052937	3L_11052937_SNP [dm3] 3L_11059837_SNP [dm6]	G	A	3.946e^-4	0.787	NON_SYNONYMOUS_CODING CG6321 DOWNSTREAM CG7888
2R	14024360	2R_14024360_SNP [dm3] 2R_18136855_SNP [dm6]	A	G	3.964e^-4	0.787	NON_SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4418581	3L_4418581_SNP [dm3] 3L_4418581_SNP [dm6]	C	T	3.965e^-4	0.787	UPSTREAM DOR INTRON DOR
3L	5279675	3L_5279675_SNP [dm3] 3L_5286575_SNP [dm6]	T	C	3.967e^-4	0.787	INTERGENIC
3L	11271862	3L_11271862_SNP [dm3] 3L_11278762_SNP [dm6]	A	G	3.978e^-4	0.787	INTERGENIC
2R	3336545	2R_3336545_SNP [dm3] 2R_7449040_SNP [dm6]	A	G	3.978e^-4	0.787	SYNONYMOUS_CODING CG11125 INTRON fa2h	TF binding site mE1_TFBS_cad
3R	26199668	3R_26199668_SNP [dm3] 3R_30373946_SNP [dm6]	C	G	3.983e^-4	0.787	INTERGENIC
3L	5103874	3L_5103874_SNP [dm3] 3L_5103874_SNP [dm6]	C	T	3.991e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19064137	3R_19064137_SNP [dm3] 3R_23238415_SNP [dm6]	T	C	3.992e^-4	0.787	INTRON CG4467
3L	13080233	3L_13080233_SNP [dm3] 3L_13087133_SNP [dm6]	A	T	3.997e^-4	0.787	UPSTREAM CR45749 INTRON CG17300
2L	2333459	2L_2333459_SNP [dm3] 2L_2333459_SNP [dm6]	A	C	3.997e^-4	0.787	INTRON CG9967 & 1 other
2L	10780098	2L_10780098_SNP [dm3] 2L_10780098_SNP [dm6]	A	T	4.000e^-4	0.787	INTRON CG31869
2L	16522198	2L_16522198_SNP [dm3] 2L_16522198_SNP [dm6]	C	G	4.009e^-4	0.787	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
2L	1678898	2L_1678898_SNP [dm3] 2L_1678898_SNP [dm6]	G	C	4.015e^-4	0.787	START_GAINED chinmo UTR_5_PRIME chinmo INTRON chinmo
2L	13639987	2L_13639987_SNP [dm3] 2L_13639987_SNP [dm6]	A	G	4.019e^-4	0.787	SYNONYMOUS_CODING ics DOWNSTREAM kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4376886	3L_4376886_SNP [dm3] 3L_4376886_SNP [dm6]	C	A	4.025e^-4	0.787	DOWNSTREAM CR44360 INTRON DopEcR
X	3819866	X_3819866_SNP [dm3] X_3925833_SNP [dm6]	T	C	4.032e^-4	0.787	INTRON CG42541
3L	2951874	3L_2951874_SNP [dm3] 3L_2951874_SNP [dm6]	A	T	4.035e^-4	0.787	UPSTREAM CG32846 INTRON Shab
3L	8947471	3L_8947471_SNP [dm3] 3L_8954371_SNP [dm6]	T	G	4.037e^-4	0.787	UPSTREAM GNBP3 & 2 others INTRON orb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	11266973	3L_11266973_DEL [dm3] 3L_11273873_DEL [dm6]	AATAATA	A	4.038e^-4	0.787	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5661869	3R_5661869_SNP [dm3] 3R_9836147_SNP [dm6]	A	G	4.038e^-4	0.787	INTRON Teh1
3R	7458840	3R_7458840_SNP [dm3] 3R_11633118_SNP [dm6]	A	T	4.044e^-4	0.787	UTR_3_PRIME CG14712 DOWNSTREAM Csk
3L	2976502	3L_2976502_SNP [dm3] 3L_2976502_SNP [dm6]	T	A	4.051e^-4	0.787	UPSTREAM CR44530 INTERGENIC
3L	1036792	3L_1036792_INS [dm3] 3L_1036792_INS [dm6]	C	CATC	4.053e^-4	0.787	UTR_3_PRIME bab1 DOWNSTREAM CG9205
3L	16664360	3L_16664360_SNP [dm3] 3L_16671260_SNP [dm6]	T	C	4.056e^-4	0.787	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
3L	16664362	3L_16664362_SNP [dm3] 3L_16671262_SNP [dm6]	C	A	4.056e^-4	0.787	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad
3R	26086299	3R_26086299_SNP [dm3] 3R_30260577_SNP [dm6]	A	G	4.063e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2960002	3L_2960002_SNP [dm3] 3L_2960002_SNP [dm6]	G	A	4.066e^-4	0.787	DOWNSTREAM Shab INTRON CG34025
2L	13924008	2L_13924008_SNP [dm3] 2L_13924008_SNP [dm6]	T	C	4.070e^-4	0.787	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7008310	2L_7008310_SNP [dm3] 2L_7008310_SNP [dm6]	G	A	4.074e^-4	0.787	INTRON uif	TF binding site BDTNP1_TFBS_hb
3L	4447404	3L_4447404_SNP [dm3] 3L_4447404_SNP [dm6]	T	A	4.082e^-4	0.787	SYNONYMOUS_CODING CG12607
2R	17291986	2R_17291986_SNP [dm3] 2R_21404481_SNP [dm6]	T	G	4.086e^-4	0.787	INTRON Sdc
3L	2976094	3L_2976094_SNP [dm3] 3L_2976094_SNP [dm6]	A	G	4.086e^-4	0.787	INTRON CR44530
3L	2951663	3L_2951663_SNP [dm3] 3L_2951663_SNP [dm6]	C	A	4.087e^-4	0.787	UPSTREAM CG32846 INTRON Shab
2L	1114572	2L_1114572_INS [dm3] 2L_1114572_INS [dm6]	G	GT	4.096e^-4	0.787	DOWNSTREAM Pino & 1 other INTERGENIC
2L	6024110	2L_6024110_SNP [dm3] 2L_6024110_SNP [dm6]	G	A	4.099e^-4	0.787	SYNONYMOUS_CODING CG9107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7464634	3R_7464634_SNP [dm3] 3R_11638912_SNP [dm6]	T	G	4.100e^-4	0.787	DOWNSTREAM CR44137 INTRON Csk
2R	17382213	2R_17382213_SNP [dm3] 2R_21494708_SNP [dm6]	A	G	4.110e^-4	0.787	INTRON Fkbp14
2R	10516851	2R_10516851_SNP [dm3] 2R_14629346_SNP [dm6]	T	C	4.111e^-4	0.787	UPSTREAM CG10131 INTERGENIC
2R	10008017	2R_10008017_SNP [dm3] 2R_14120512_SNP [dm6]	C	G	4.116e^-4	0.787	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
X	3593079	X_3593079_DEL [dm3] X_3699046_DEL [dm6]	TTGTCAAA	C	4.117e^-4	0.787	INTRON Mnt
3L	3649186	3L_3649186_SNP [dm3] 3L_3649186_SNP [dm6]	T	A	4.117e^-4	0.787	INTRON dar1
2R	9967502	2R_9967502_SNP [dm3] 2R_14079997_SNP [dm6]	A	G	4.130e^-4	0.788	INTRON Prosap
2R	16076273	2R_16076273_INS [dm3] 2R_20188768_INS [dm6]	A	ACATA	4.131e^-4	0.788	INTERGENIC
2R	10008047	2R_10008047_SNP [dm3] 2R_14120542_SNP [dm6]	G	A	4.137e^-4	0.788	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
X	9325449	X_9325449_SNP [dm3] X_9431416_SNP [dm6]	A	G	4.145e^-4	0.788	INTRON mgl
3R	14423872	3R_14423872_SNP [dm3] 3R_18598150_SNP [dm6]	C	A	4.145e^-4	0.788	NON_SYNONYMOUS_CODING CG14304 UPSTREAM CG14305 INTRON qin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18401845	3L_18401845_SNP [dm3] 3L_18408745_SNP [dm6]	G	C	4.146e^-4	0.788	INTERGENIC
2L	9872937	2L_9872937_SNP [dm3] 2L_9872937_SNP [dm6]	T	C	4.149e^-4	0.788	INTRON nAChRalpha6
3L	8032906	3L_8032906_DEL [dm3] 3L_8039806_DEL [dm6]	TA	C	4.160e^-4	0.788	INTRON nmo
2L	5563635	2L_5563635_SNP [dm3] 2L_5563635_SNP [dm6]	A	G	4.165e^-4	0.788	DOWNSTREAM GluRIIB INTERGENIC
3R	25726895	3R_25726895_SNP [dm3] 3R_29901173_SNP [dm6]	G	C	4.166e^-4	0.788	INTRON CG31038
3L	5796656	3L_5796656_DEL [dm3] 3L_5803556_DEL [dm6]	TAAGACTT	T	4.168e^-4	0.788	UPSTREAM CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5466329	3L_5466329_SNP [dm3] 3L_5473229_SNP [dm6]	A	C	4.174e^-4	0.788	INTERGENIC
2L	2002052	2L_2002052_SNP [dm3] 2L_2002052_SNP [dm6]	C	T	4.179e^-4	0.788	INTRON CG33543 EXON CR43464
2R	3591031	2R_3591031_SNP [dm3] 2R_7703526_SNP [dm6]	T	C	4.190e^-4	0.788	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
2R	17419784	2R_17419784_SNP [dm3] 2R_21532279_SNP [dm6]	A	G	4.195e^-4	0.788	UPSTREAM CR44725 INTRON Egfr
2R	14966153	2R_14966153_SNP [dm3] 2R_19078648_SNP [dm6]	A	T	4.197e^-4	0.788	INTRON 5-HT1A
2R	14119803	2R_14119803_SNP [dm3] 2R_18232298_SNP [dm6]	C	T	4.198e^-4	0.788	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7610411	X_7610411_SNP [dm3] X_7716378_SNP [dm6]	C	G	4.201e^-4	0.788	INTRON CG15478
2L	16936396	2L_16936396_SNP [dm3] 2L_16936396_SNP [dm6]	G	A	4.204e^-4	0.788	INTERGENIC

By genomic position
Variant impact
Gene name

mn_Resp_EthylButyrat phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results