DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.173e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.9567	0.0839

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3180 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	18679141	3R_18679141_SNP [dm3] 3R_22853419_SNP [dm6]	T	C	2.759e^-8	0.052	INTERGENIC
3R	14936276	3R_14936276_DEL [dm3] 3R_19110554_DEL [dm6]	TT	T	8.740e^-8	0.082	INTRON CG6040
2L	11023847	2L_11023847_SNP [dm3] 2L_11023847_SNP [dm6]	T	G	5.181e^-7	0.193	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	16489896	2L_16489896_SNP [dm3] 2L_16489896_SNP [dm6]	G	A	5.960e^-7	0.193	SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site mE1_TFBS_HSA
3R	728241	3R_728241_SNP [dm3] 3R_4902519_SNP [dm6]	T	A	7.798e^-7	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13045844	3R_13045844_SNP [dm3] 3R_17220122_SNP [dm6]	T	C	9.044e^-7	0.193	UPSTREAM CG31262 INTRON CG31262
2L	15941198	2L_15941198_SNP [dm3] 2L_15941198_SNP [dm6]	A	G	9.210e^-7	0.193	UPSTREAM CG12448 INTRON beat-Ib
3R	15559540	3R_15559540_SNP [dm3] 3R_19733818_SNP [dm6]	T	A	9.650e^-7	0.193	INTRON GluClalpha
2L	15941267	2L_15941267_SNP [dm3] 2L_15941267_SNP [dm6]	T	A	1.082e^-6	0.193	UPSTREAM CG12448 INTRON beat-Ib
3R	728242	3R_728242_SNP [dm3] 3R_4902520_SNP [dm6]	T	C	1.214e^-6	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11023830	2L_11023830_DEL [dm3] 2L_11023830_DEL [dm6]	TT	T	1.254e^-6	0.193	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	11023837	2L_11023837_SNP [dm3] 2L_11023837_SNP [dm6]	T	G	1.284e^-6	0.193	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	16491223	2L_16491223_SNP [dm3] 2L_16491223_SNP [dm6]	T	C	1.339e^-6	0.193	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2R	5857205	2R_5857205_SNP [dm3] 2R_9969700_SNP [dm6]	C	T	1.462e^-6	0.194	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15941193	2L_15941193_SNP [dm3] 2L_15941193_SNP [dm6]	A	G	1.588e^-6	0.194	UPSTREAM CG12448 INTRON beat-Ib
2L	15941290	2L_15941290_SNP [dm3] 2L_15941290_SNP [dm6]	T	C	1.769e^-6	0.194	UPSTREAM CG12448 INTRON beat-Ib
3R	13154603	3R_13154603_SNP [dm3] 3R_17328881_SNP [dm6]	G	A	1.778e^-6	0.194	INTRON beat-IIa
3L	14809836	3L_14809836_SNP [dm3] 3L_14816736_SNP [dm6]	A	C	1.858e^-6	0.194	INTRON CG17839
2R	8383660	2R_8383660_SNP [dm3] 2R_12496155_SNP [dm6]	A	T	2.202e^-6	0.204	SYNONYMOUS_CODING s-cup INTRON fdl
3R	695747	3R_695747_SNP [dm3] 3R_4870025_SNP [dm6]	T	A	2.382e^-6	0.204	DOWNSTREAM opa INTERGENIC
2L	9413742	2L_9413742_SNP [dm3] 2L_9413742_SNP [dm6]	G	C	2.478e^-6	0.204	INTRON Shawl
3R	13155121	3R_13155121_SNP [dm3] 3R_17329399_SNP [dm6]	G	A	2.499e^-6	0.204	INTRON beat-IIa
3R	15560750	3R_15560750_SNP [dm3] 3R_19735028_SNP [dm6]	T	C	2.600e^-6	0.204	INTRON GluClalpha
2R	5842008	2R_5842008_SNP [dm3] 2R_9954503_SNP [dm6]	C	T	2.710e^-6	0.204	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	1880265	X_1880265_SNP [dm3] X_1986232_SNP [dm6]	A	G	2.942e^-6	0.204	INTRON Hr4
3L	16251162	3L_16251162_SNP [dm3] 3L_16258062_SNP [dm6]	A	C	3.071e^-6	0.204	UPSTREAM CG13054 DOWNSTREAM CG13053 INTERGENIC
2L	9413761	2L_9413761_SNP [dm3] 2L_9413761_SNP [dm6]	A	G	3.159e^-6	0.204	INTRON Shawl
3L	2829665	3L_2829665_SNP [dm3] 3L_2829665_SNP [dm6]	G	A	3.190e^-6	0.204	INTRON CG43444
3L	16262109	3L_16262109_SNP [dm3] 3L_16269009_SNP [dm6]	A	C	3.358e^-6	0.204	UPSTREAM CG4950 & 1 other INTERGENIC
3R	3816993	3R_3816993_SNP [dm3] 3R_7991271_SNP [dm6]	A	T	3.377e^-6	0.204	INTRON CG2781
2L	16489887	2L_16489887_SNP [dm3] 2L_16489887_SNP [dm6]	T	A	3.377e^-6	0.204	SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site mE1_TFBS_HSA
2L	11023850	2L_11023850_SNP [dm3] 2L_11023850_SNP [dm6]	G	T	3.720e^-6	0.218	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	16486256	2L_16486256_SNP [dm3] 2L_16486256_SNP [dm6]	C	T	3.973e^-6	0.218	UPSTREAM dac INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15560748	3R_15560748_SNP [dm3] 3R_19735026_SNP [dm6]	T	G	4.072e^-6	0.218	INTRON GluClalpha
3L	9501756	3L_9501756_SNP [dm3] 3L_9508656_SNP [dm6]	A	G	4.261e^-6	0.218	INTRON CG3408	TF binding site BDTNP1_TFBS_dl
3R	13154616	3R_13154616_SNP [dm3] 3R_17328894_SNP [dm6]	A	G	4.278e^-6	0.218	INTRON beat-IIa
2L	16491283	2L_16491283_SNP [dm3] 2L_16491283_SNP [dm6]	T	G	4.306e^-6	0.218	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2R	5837819	2R_5837819_SNP [dm3] 2R_9950314_SNP [dm6]	T	C	4.586e^-6	0.226	INTRON Mef2
2L	15941162	2L_15941162_SNP [dm3] 2L_15941162_SNP [dm6]	A	C	4.701e^-6	0.226	UPSTREAM CG12448 INTRON beat-Ib
X	3814795	X_3814795_DEL [dm3] X_3920762_DEL [dm6]	AA	A	4.873e^-6	0.227	INTRON CG42541
3R	16283215	3R_16283215_SNP [dm3] 3R_20457493_SNP [dm6]	T	A	5.422e^-6	0.227	INTRON Gfrl	TF binding site mE1_TFBS_inv
3R	695754	3R_695754_SNP [dm3] 3R_4870032_SNP [dm6]	G	A	5.424e^-6	0.227	DOWNSTREAM opa INTERGENIC
2L	9413762	2L_9413762_SNP [dm3] 2L_9413762_SNP [dm6]	C	T	5.486e^-6	0.227	INTRON Shawl
X	9135141	X_9135141_SNP [dm3] X_9241108_SNP [dm6]	C	G	5.508e^-6	0.227	SYNONYMOUS_CODING mxc	TF binding site mE1_TFBS_sens
2R	5847835	2R_5847835_SNP [dm3] 2R_9960330_SNP [dm6]	T	A	5.533e^-6	0.227	UPSTREAM CG15863 INTRON Pal1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7152233	2L_7152233_SNP [dm3] 2L_7152233_SNP [dm6]	G	A	5.557e^-6	0.227	INTRON Pvf3
2L	12090221	2L_12090221_SNP [dm3] 2L_12090221_SNP [dm6]	G	A	6.008e^-6	0.24	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11296666	2L_11296666_SNP [dm3] 2L_11296666_SNP [dm6]	C	T	6.431e^-6	0.249	INTERGENIC
3L	10986094	3L_10986094_SNP [dm3] 3L_10992994_SNP [dm6]	G	T	6.503e^-6	0.249	INTRON klu
3R	12683396	3R_12683396_SNP [dm3] 3R_16857674_SNP [dm6]	T	G	6.787e^-6	0.252	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24026372	3R_24026372_SNP [dm3] 3R_28200650_SNP [dm6]	T	A	6.840e^-6	0.252	INTRON CG34354
2R	8383668	2R_8383668_SNP [dm3] 2R_12496163_SNP [dm6]	A	G	7.190e^-6	0.259	NON_SYNONYMOUS_CODING s-cup INTRON fdl
3R	13045821	3R_13045821_SNP [dm3] 3R_17220099_SNP [dm6]	A	G	7.874e^-6	0.265	UPSTREAM CG31262 INTRON CG31262
2R	14083563	2R_14083563_SNP [dm3] 2R_18196058_SNP [dm6]	T	G	7.917e^-6	0.265	INTERGENIC
3L	16736372	3L_16736372_SNP [dm3] 3L_16743272_SNP [dm6]	A	G	8.023e^-6	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	1880244	X_1880244_SNP [dm3] X_1986211_SNP [dm6]	T	C	8.152e^-6	0.265	INTRON Hr4
3L	14809833	3L_14809833_SNP [dm3] 3L_14816733_SNP [dm6]	G	C	8.322e^-6	0.265	INTRON CG17839
2R	3375051	2R_3375051_SNP [dm3] 2R_7487546_SNP [dm6]	C	A	8.604e^-6	0.265	INTRON wech	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	587480	3R_587480_SNP [dm3] 3R_4761758_SNP [dm6]	T	A	8.791e^-6	0.265	INTRON atms & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17616390	2R_17616390_SNP [dm3] 2R_21728885_SNP [dm6]	A	G	9.015e^-6	0.265	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	12683436	3R_12683436_SNP [dm3] 3R_16857714_SNP [dm6]	A	T	9.026e^-6	0.265	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	18414274	2L_18414274_SNP [dm3] 2L_18414274_SNP [dm6]	G	A	9.051e^-6	0.265	INTERGENIC
3R	16283303	3R_16283303_DEL [dm3] 3R_20457581_DEL [dm6]	ATATTTTGAAAATGTAGCA...	A	9.128e^-6	0.265	INTRON Gfrl	TF binding site mE1_TFBS_inv
3L	10666718	3L_10666718_SNP [dm3] 3L_10673618_SNP [dm6]	G	A	9.198e^-6	0.265	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11198995	3R_11198995_SNP [dm3] 3R_15373273_SNP [dm6]	A	G	9.262e^-6	0.265	INTRON Ccm3
2L	9766194	2L_9766194_SNP [dm3] 2L_9766194_SNP [dm6]	A	G	9.347e^-6	0.265	SYNONYMOUS_CODING ppk18 UPSTREAM CG4017 DOWNSTREAM und
3R	11461130	3R_11461130_SNP [dm3] 3R_15635408_SNP [dm6]	A	G	9.614e^-6	0.265	UPSTREAM CG43335 INTERGENIC
2L	5694534	2L_5694534_SNP [dm3] 2L_5694534_SNP [dm6]	T	C	9.827e^-6	0.265	INTERGENIC
3R	16283331	3R_16283331_SNP [dm3] 3R_20457609_SNP [dm6]	T	A	1.008e^-5	0.265	INTRON Gfrl
2R	14328619	2R_14328619_SNP [dm3] 2R_18441114_SNP [dm6]	G	C	1.021e^-5	0.265	UTR_5_PRIME slim UPSTREAM CG30118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	24026397	3R_24026397_SNP [dm3] 3R_28200675_SNP [dm6]	C	T	1.044e^-5	0.265	INTRON CG34354
4	552679	4_552679_DEL [dm3] 4_532053_DEL [dm6]	TT	T	1.048e^-5	0.265	INTRON zfh2
3L	16267559	3L_16267559_SNP [dm3] 3L_16274459_SNP [dm6]	T	C	1.066e^-5	0.265	DOWNSTREAM CG13066 INTERGENIC
3R	26189265	3R_26189265_SNP [dm3] 3R_30363543_SNP [dm6]	G	T	1.080e^-5	0.265	UTR_3_PRIME hdc
3R	12683008	3R_12683008_SNP [dm3] 3R_16857286_SNP [dm6]	T	G	1.085e^-5	0.265	UPSTREAM mir-iab-8 DOWNSTREAM mir-iab-4 & 1 other INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	728124	3R_728124_SNP [dm3] 3R_4902402_SNP [dm6]	A	G	1.086e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16283358	3R_16283358_SNP [dm3] 3R_20457636_SNP [dm6]	T	G	1.090e^-5	0.265	INTRON Gfrl
3R	12683402	3R_12683402_SNP [dm3] 3R_16857680_SNP [dm6]	A	G	1.117e^-5	0.266	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12442082	2R_12442082_SNP [dm3] 2R_16554577_SNP [dm6]	A	G	1.120e^-5	0.266	UPSTREAM Syn2 INTRON Syn2
3R	16282742	3R_16282742_SNP [dm3] 3R_20457020_SNP [dm6]	A	C	1.156e^-5	0.267	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11023826	2L_11023826_SNP [dm3] 2L_11023826_SNP [dm6]	G	T	1.158e^-5	0.267	INTRON Samuel	TF binding site mE1_TFBS_cad
2R	14550302	2R_14550302_SNP [dm3] 2R_18662797_SNP [dm6]	T	A	1.169e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2171991	X_2171991_SNP [dm3] X_2277958_SNP [dm6]	T	C	1.229e^-5	0.275	DOWNSTREAM CG2865 & 1 other INTERGENIC
3R	12682740	3R_12682740_SNP [dm3] 3R_16857018_SNP [dm6]	C	T	1.233e^-5	0.275	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18108522	3R_18108522_SNP [dm3] 3R_22282800_SNP [dm6]	G	C	1.270e^-5	0.279	INTRON SKIP
3R	13273260	3R_13273260_SNP [dm3] 3R_17447538_SNP [dm6]	A	G	1.290e^-5	0.279	SPLICE_SITE_REGION Eh INTRON Eh
2R	4572612	2R_4572612_SNP [dm3] 2R_8685107_SNP [dm6]	A	G	1.293e^-5	0.279	INTERGENIC	TF binding site mE1_TFBS_inv
4	648978	4_648978_SNP [dm3] 4_628352_SNP [dm6]	G	T	1.329e^-5	0.281	INTERGENIC
3L	2361291	3L_2361291_SNP [dm3] 3L_2361291_SNP [dm6]	C	A	1.334e^-5	0.281	SYNONYMOUS_CODING CG13801	TF binding site mE1_TFBS_sens
3R	13045826	3R_13045826_SNP [dm3] 3R_17220104_SNP [dm6]	T	C	1.381e^-5	0.288	UPSTREAM CG31262 INTRON CG31262
3R	13154338	3R_13154338_SNP [dm3] 3R_17328616_SNP [dm6]	C	G	1.415e^-5	0.289	INTRON beat-IIa
2L	16491267	2L_16491267_INS [dm3] 2L_16491267_INS [dm6]	C	CAC	1.418e^-5	0.289	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	12683439	3R_12683439_SNP [dm3] 3R_16857717_SNP [dm6]	C	A	1.486e^-5	0.295	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	10512551	2R_10512551_SNP [dm3] 2R_14625046_SNP [dm6]	C	T	1.498e^-5	0.295	DOWNSTREAM snoRNA:Me28S-G2703c & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18679010	3R_18679010_SNP [dm3] 3R_22853288_SNP [dm6]	G	T	1.521e^-5	0.295	INTERGENIC
X	13617541	X_13617541_SNP [dm3] X_13723508_SNP [dm6]	G	A	1.539e^-5	0.295	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5857084	2R_5857084_SNP [dm3] 2R_9969579_SNP [dm6]	T	C	1.554e^-5	0.295	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4845174	2R_4845174_SNP [dm3] 2R_8957669_SNP [dm6]	T	G	1.558e^-5	0.295	INTRON babo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12682939	3R_12682939_SNP [dm3] 3R_16857217_SNP [dm6]	C	T	1.575e^-5	0.295	UPSTREAM mir-iab-8 DOWNSTREAM mir-iab-4 & 1 other INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	14622888	2R_14622888_SNP [dm3] 2R_18735383_SNP [dm6]	A	G	1.575e^-5	0.295	INTRON Hs3st-A
3R	15193169	3R_15193169_SNP [dm3] 3R_19367447_SNP [dm6]	G	T	1.658e^-5	0.308	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16270033	3L_16270033_SNP [dm3] 3L_16276933_SNP [dm6]	T	G	1.673e^-5	0.308	UPSTREAM CG13065 INTERGENIC
3L	16267562	3L_16267562_MNP [dm3] 3L_16274462_MNP [dm6]	TTAT	CATC	1.694e^-5	0.308	DOWNSTREAM CG13066 INTERGENIC
2L	9653543	2L_9653543_SNP [dm3] 2L_9653543_SNP [dm6]	T	C	1.707e^-5	0.308	SYNONYMOUS_CODING Apoltp
3L	16270089	3L_16270089_SNP [dm3] 3L_16276989_SNP [dm6]	T	A	1.741e^-5	0.308	UPSTREAM CG13065 INTERGENIC
X	3022082	X_3022082_INS [dm3] X_3128049_INS [dm6]	A	AA	1.757e^-5	0.308	UPSTREAM kirre INTRON kirre
2L	9657121	2L_9657121_SNP [dm3] 2L_9657121_SNP [dm6]	T	C	1.765e^-5	0.308	SYNONYMOUS_CODING CG33299
2R	5862306	2R_5862306_SNP [dm3] 2R_9974801_SNP [dm6]	T	C	1.774e^-5	0.308	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5854158	2R_5854158_SNP [dm3] 2R_9966653_SNP [dm6]	A	G	1.807e^-5	0.311	UPSTREAM CG12133 INTERGENIC
3L	16289783	3L_16289783_SNP [dm3] 3L_16296683_SNP [dm6]	A	G	1.832e^-5	0.312	INTERGENIC
2R	5824862	2R_5824862_SNP [dm3] 2R_9937357_SNP [dm6]	C	A	1.884e^-5	0.318	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15011880	3L_15011880_SNP [dm3] 3L_15018780_SNP [dm6]	A	G	1.901e^-5	0.318	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9408966	3L_9408966_SNP [dm3] 3L_9415866_SNP [dm6]	A	G	1.927e^-5	0.318	UTR_3_PRIME CG3982 INTRON CG3967	TF binding site mE1_TFBS_cad
3R	12684465	3R_12684465_DEL [dm3] 3R_16858743_DEL [dm6]	CTTGTATACTTAT...	C	1.941e^-5	0.318	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9649158	2L_9649158_SNP [dm3] 2L_9649158_SNP [dm6]	A	T	1.949e^-5	0.318	INTRON Apoltp
2R	5856956	2R_5856956_SNP [dm3] 2R_9969451_SNP [dm6]	T	C	1.968e^-5	0.318	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5871348	2R_5871348_SNP [dm3] 2R_9983843_SNP [dm6]	T	C	2.021e^-5	0.324	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9434819	2R_9434819_SNP [dm3] 2R_13547314_SNP [dm6]	T	C	2.084e^-5	0.328	UPSTREAM CG6145 DOWNSTREAM CG33156 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15940563	2L_15940563_SNP [dm3] 2L_15940563_SNP [dm6]	A	T	2.111e^-5	0.328	UPSTREAM CG12448 INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2828944	3L_2828944_SNP [dm3] 3L_2828944_SNP [dm6]	T	C	2.112e^-5	0.328	INTRON CG43444
2R	12035128	2R_12035128_SNP [dm3] 2R_16147623_SNP [dm6]	C	T	2.144e^-5	0.328	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
X	11273394	X_11273394_DEL [dm3] X_11379361_DEL [dm6]	ATAAG	A	2.164e^-5	0.328	INTRON dlg1
2L	7223312	2L_7223312_SNP [dm3] 2L_7223312_SNP [dm6]	G	T	2.176e^-5	0.328	UPSTREAM ico DOWNSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	5834955	2R_5834955_SNP [dm3] 2R_9947450_SNP [dm6]	G	T	2.182e^-5	0.328	INTRON Mef2	TF binding site mE1_TFBS_sens
3L	7903878	3L_7903878_DEL [dm3] 3L_7910778_DEL [dm6]	TT	T	2.188e^-5	0.328	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18412960	2L_18412960_SNP [dm3] 2L_18412960_SNP [dm6]	C	G	2.209e^-5	0.329	INTERGENIC
3R	12682920	3R_12682920_SNP [dm3] 3R_16857198_SNP [dm6]	C	T	2.252e^-5	0.329	UPSTREAM mir-iab-8 DOWNSTREAM mir-iab-4 & 1 other INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	8563188	2L_8563188_SNP [dm3] 2L_8563188_SNP [dm6]	T	G	2.254e^-5	0.329	INTRON Sema-1a
4	747343	4_747343_DEL [dm3] 4_726717_DEL [dm6]	TTAACGAAACATGAGCCTTA...	T	2.260e^-5	0.329	INTRON bt
2R	9433222	2R_9433222_SNP [dm3] 2R_13545717_SNP [dm6]	A	T	2.284e^-5	0.329	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2R	4572618	2R_4572618_SNP [dm3] 2R_8685113_SNP [dm6]	G	A	2.300e^-5	0.329	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5857098	2R_5857098_SNP [dm3] 2R_9969593_SNP [dm6]	G	A	2.347e^-5	0.331	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10706107	2R_10706107_SNP [dm3] 2R_14818602_SNP [dm6]	G	T	2.371e^-5	0.331	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_sens
2L	6340085	2L_6340085_INS [dm3] 2L_6340085_INS [dm6]	A	ACATATAGA	2.384e^-5	0.331	INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	9653681	2L_9653681_SNP [dm3] 2L_9653681_SNP [dm6]	G	A	2.411e^-5	0.331	SYNONYMOUS_CODING Apoltp
3L	16733234	3L_16733234_INS [dm3] 3L_16740134_INS [dm6]	T	TGTTTATT	2.414e^-5	0.331	DOWNSTREAM CG9701 INTERGENIC
3R	12682733	3R_12682733_SNP [dm3] 3R_16857011_SNP [dm6]	C	A	2.420e^-5	0.331	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7152254	2L_7152254_SNP [dm3] 2L_7152254_SNP [dm6]	C	A	2.443e^-5	0.332	INTRON Pvf3
3L	16269817	3L_16269817_SNP [dm3] 3L_16276717_SNP [dm6]	T	A	2.493e^-5	0.336	UPSTREAM CG13065 INTERGENIC
3L	12141189	3L_12141189_SNP [dm3] 3L_12148089_SNP [dm6]	G	A	2.542e^-5	0.338	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
3L	12141204	3L_12141204_SNP [dm3] 3L_12148104_SNP [dm6]	C	T	2.542e^-5	0.338	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
2R	12564903	2R_12564903_SNP [dm3] 2R_16677398_SNP [dm6]	C	T	2.574e^-5	0.34	INTRON CG30463
2L	9766134	2L_9766134_SNP [dm3] 2L_9766134_SNP [dm6]	C	T	2.590e^-5	0.34	UPSTREAM CG4017 DOWNSTREAM und INTRON ppk18
2R	8442808	2R_8442808_SNP [dm3] 2R_12555303_SNP [dm6]	G	A	2.619e^-5	0.341	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2L	13262793	2L_13262793_INS [dm3] 2L_13262793_INS [dm6]	T	TT	2.654e^-5	0.343	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
2L	8219724	2L_8219724_SNP [dm3] 2L_8219724_SNP [dm6]	C	T	2.748e^-5	0.347	NON_SYNONYMOUS_CODING Snx6
3L	10666653	3L_10666653_SNP [dm3] 3L_10673553_SNP [dm6]	G	A	2.765e^-5	0.347	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17304242	3L_17304242_SNP [dm3] 3L_17311142_SNP [dm6]	G	A	2.773e^-5	0.347	INTERGENIC
3L	8151897	3L_8151897_SNP [dm3] 3L_8158797_SNP [dm6]	G	A	2.781e^-5	0.347	UTR_5_PRIME CG42445 DOWNSTREAM CG43886
3R	12684464	3R_12684464_INS [dm3] 3R_16858742_INS [dm6]	T	TACAAGAT	2.788e^-5	0.347	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9413990	2L_9413990_SNP [dm3] 2L_9413990_SNP [dm6]	G	T	2.798e^-5	0.347	INTRON Shawl
2L	8772775	2L_8772775_SNP [dm3] 2L_8772775_SNP [dm6]	C	T	2.838e^-5	0.347	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
2R	12564927	2R_12564927_SNP [dm3] 2R_16677422_SNP [dm6]	T	A	2.895e^-5	0.347	INTRON CG30463
2L	9653609	2L_9653609_SNP [dm3] 2L_9653609_SNP [dm6]	T	C	2.910e^-5	0.347	SYNONYMOUS_CODING Apoltp
3R	16283262	3R_16283262_INS [dm3] 3R_20457540_INS [dm6]	T	TGATCTGCCAT...	2.914e^-5	0.347	INTRON Gfrl	TF binding site mE1_TFBS_inv
2L	11495737	2L_11495737_SNP [dm3] 2L_11495737_SNP [dm6]	T	A	2.917e^-5	0.347	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12682788	3R_12682788_INS [dm3] 3R_16857066_INS [dm6]	C	CTAC	2.939e^-5	0.347	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9193407	2R_9193407_DEL [dm3] 2R_13305902_DEL [dm6]	TGATGCTGATGGT...	T	2.943e^-5	0.347	INTERGENIC
2R	5847549	2R_5847549_SNP [dm3] 2R_9960044_SNP [dm6]	A	T	2.947e^-5	0.347	UTR_5_PRIME Pal1 UPSTREAM Pal1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24025895	3R_24025895_SNP [dm3] 3R_28200173_SNP [dm6]	A	C	2.963e^-5	0.347	INTRON CG34354
3L	10444654	3L_10444654_SNP [dm3] 3L_10451554_SNP [dm6]	A	C	2.984e^-5	0.348	INTERGENIC
2R	14328278	2R_14328278_SNP [dm3] 2R_18440773_SNP [dm6]	A	G	3.043e^-5	0.352	UPSTREAM slim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16267567	3L_16267567_INS [dm3] 3L_16274467_INS [dm6]	G	CGCCCA	3.077e^-5	0.354	DOWNSTREAM CG13066 INTERGENIC
2L	2679474	2L_2679474_SNP [dm3] 2L_2679474_SNP [dm6]	G	T	3.101e^-5	0.355	INTRON CG31690
2R	17850182	2R_17850182_DEL [dm3] 2R_21962677_DEL [dm6]	ATGTA	A	3.120e^-5	0.355	INTERGENIC
2R	12564926	2R_12564926_SNP [dm3] 2R_16677421_SNP [dm6]	T	G	3.205e^-5	0.362	INTRON CG30463
2L	3670196	2L_3670196_SNP [dm3] 2L_3670196_SNP [dm6]	G	A	3.251e^-5	0.364	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
3R	18725536	3R_18725536_SNP [dm3] 3R_22899814_SNP [dm6]	T	G	3.263e^-5	0.364	INTRON klg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	12682799	3R_12682799_SNP [dm3] 3R_16857077_SNP [dm6]	T	A	3.291e^-5	0.364	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10876460	2R_10876460_SNP [dm3] 2R_14988955_SNP [dm6]	G	A	3.297e^-5	0.364	SYNONYMOUS_CODING CG7639 INTRON pcs	TF binding site mE1_TFBS_sens
3R	1713101	3R_1713101_SNP [dm3] 3R_5887379_SNP [dm6]	C	G	3.372e^-5	0.369	INTRON CG34113
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	3.412e^-5	0.369	INTRON CR44997
2L	16489495	2L_16489495_SNP [dm3] 2L_16489495_SNP [dm6]	G	A	3.415e^-5	0.369	SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	2431972	3L_2431972_INS [dm3] 3L_2431972_INS [dm6]	T	GC	3.421e^-5	0.369	INTRON CG45186
2L	9653531	2L_9653531_SNP [dm3] 2L_9653531_SNP [dm6]	A	C	3.558e^-5	0.38	SYNONYMOUS_CODING Apoltp
3R	26998024	3R_26998024_SNP [dm3] 3R_31172302_SNP [dm6]	G	A	3.572e^-5	0.38	INTRON Gycbeta100B
X	15711294	X_15711294_SNP [dm3] X_15817261_SNP [dm6]	G	T	3.613e^-5	0.38	UPSTREAM sd INTRON sd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9272846	2R_9272846_SNP [dm3] 2R_13385341_SNP [dm6]	A	C	3.631e^-5	0.38	INTERGENIC
2L	11494752	2L_11494752_SNP [dm3] 2L_11494752_SNP [dm6]	C	A	3.635e^-5	0.38	INTERGENIC
2L	17270617	2L_17270617_SNP [dm3] 2L_17270617_SNP [dm6]	T	A	3.646e^-5	0.38	INTERGENIC
3R	7434587	3R_7434587_SNP [dm3] 3R_11608865_SNP [dm6]	C	G	3.705e^-5	0.381	INTRON Jupiter
3R	10259550	3R_10259550_SNP [dm3] 3R_14433828_SNP [dm6]	A	T	3.718e^-5	0.381	INTRON cv-c
2R	8383825	2R_8383825_SNP [dm3] 2R_12496320_SNP [dm6]	C	T	3.764e^-5	0.381	INTRON fdl & 1 other
2R	12476003	2R_12476003_SNP [dm3] 2R_16588498_SNP [dm6]	G	A	3.786e^-5	0.381	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13043938	3R_13043938_SNP [dm3] 3R_17218216_SNP [dm6]	T	G	3.814e^-5	0.381	NON_SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
3L	8733470	3L_8733470_SNP [dm3] 3L_8740370_SNP [dm6]	G	A	3.830e^-5	0.381	SYNONYMOUS_CODING Prm	TF binding site mE1_TFBS_cad
2R	14328244	2R_14328244_DEL [dm3] 2R_18440739_DEL [dm6]	ATAATGTGAGTTGA...	A	3.832e^-5	0.381	UPSTREAM slim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5834956	2R_5834956_SNP [dm3] 2R_9947451_SNP [dm6]	T	A	3.841e^-5	0.381	INTRON Mef2	TF binding site mE1_TFBS_sens
3L	15069961	3L_15069961_INS [dm3] 3L_15076861_INS [dm6]	A	AGGATAA	3.842e^-5	0.381	DOWNSTREAM Or71a INTRON cp309
2L	7333613	2L_7333613_SNP [dm3] 2L_7333613_SNP [dm6]	C	T	3.858e^-5	0.381	UPSTREAM Wnt6 INTERGENIC
2L	8563190	2L_8563190_SNP [dm3] 2L_8563190_SNP [dm6]	C	T	3.898e^-5	0.382	INTRON Sema-1a
X	6334210	X_6334210_SNP [dm3] X_6440177_SNP [dm6]	C	T	3.926e^-5	0.382	INTRON CG42340
2R	10509931	2R_10509931_SNP [dm3] 2R_14622426_SNP [dm6]	C	T	3.977e^-5	0.382	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	4466616	2L_4466616_SNP [dm3] 2L_4466616_SNP [dm6]	G	T	4.022e^-5	0.382	NON_SYNONYMOUS_CODING CG17840	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16261654	3L_16261654_SNP [dm3] 3L_16268554_SNP [dm6]	C	T	4.035e^-5	0.382	UPSTREAM CG4950 & 1 other INTERGENIC
2R	10509688	2R_10509688_SNP [dm3] 2R_14622183_SNP [dm6]	G	C	4.042e^-5	0.382	UPSTREAM CG12863 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 1 other INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	8529637	2R_8529637_SNP [dm3] 2R_12642132_SNP [dm6]	A	G	4.123e^-5	0.382	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
3L	2431939	3L_2431939_SNP [dm3] 3L_2431939_SNP [dm6]	G	A	4.129e^-5	0.382	INTRON CG45186
2R	10517997	2R_10517997_SNP [dm3] 2R_14630492_SNP [dm6]	A	C	4.129e^-5	0.382	SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10509708	2R_10509708_SNP [dm3] 2R_14622203_SNP [dm6]	G	T	4.159e^-5	0.382	UPSTREAM CG12863 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 1 other INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	3944639	2R_3944639_SNP [dm3] 2R_8057134_SNP [dm6]	T	C	4.170e^-5	0.382	SYNONYMOUS_CODING CG12769	TF binding site mE1_TFBS_chinmo
3L	1356009	3L_1356009_SNP [dm3] 3L_1356009_SNP [dm6]	T	C	4.187e^-5	0.382	INTRON Ptp61F	TF binding site mE1_TFBS_inv
4	273050	4_273050_SNP [dm3] 4_252424_SNP [dm6]	G	A	4.215e^-5	0.382	INTRON dpr7
3R	15193189	3R_15193189_SNP [dm3] 3R_19367467_SNP [dm6]	G	A	4.219e^-5	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6113630	3L_6113630_SNP [dm3] 3L_6120530_SNP [dm6]	G	A	4.223e^-5	0.382	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18383588	3R_18383588_SNP [dm3] 3R_22557866_SNP [dm6]	C	T	4.263e^-5	0.382	DOWNSTREAM CG5278 INTERGENIC
2L	11494733	2L_11494733_SNP [dm3] 2L_11494733_SNP [dm6]	C	A	4.273e^-5	0.382	INTERGENIC
2L	14786072	2L_14786072_SNP [dm3] 2L_14786072_SNP [dm6]	T	C	4.273e^-5	0.382	INTERGENIC
2R	8897575	2R_8897575_SNP [dm3] 2R_13010070_SNP [dm6]	C	T	4.276e^-5	0.382	INTERGENIC
2L	11494735	2L_11494735_SNP [dm3] 2L_11494735_SNP [dm6]	T	G	4.278e^-5	0.382	INTERGENIC
2L	9657103	2L_9657103_SNP [dm3] 2L_9657103_SNP [dm6]	C	T	4.302e^-5	0.382	SYNONYMOUS_CODING CG33299
3R	16263930	3R_16263930_SNP [dm3] 3R_20438208_SNP [dm6]	A	G	4.330e^-5	0.383	INTRON Gfrl
2R	10499576	2R_10499576_SNP [dm3] 2R_14612071_SNP [dm6]	T	C	4.344e^-5	0.383	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2
2R	8453903	2R_8453903_SNP [dm3] 2R_12566398_SNP [dm6]	C	G	4.404e^-5	0.385	NON_SYNONYMOUS_CODING Cyp301a1
X	13931381	X_13931381_SNP [dm3] X_14037348_SNP [dm6]	C	T	4.420e^-5	0.385	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9649310	2L_9649310_SNP [dm3] 2L_9649310_SNP [dm6]	C	T	4.429e^-5	0.385	SYNONYMOUS_CODING Apoltp
3R	15528323	3R_15528323_SNP [dm3] 3R_19702601_SNP [dm6]	T	G	4.552e^-5	0.393	INTERGENIC
2R	9433219	2R_9433219_SNP [dm3] 2R_13545714_SNP [dm6]	A	T	4.657e^-5	0.398	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12333416	2R_12333416_DEL [dm3] 2R_16445911_DEL [dm6]	AA	A	4.660e^-5	0.398	UPSTREAM CG15925 INTERGENIC
3R	15244331	3R_15244331_SNP [dm3] 3R_19418609_SNP [dm6]	T	C	4.664e^-5	0.398	INTRON CG31221
2L	14143580	2L_14143580_SNP [dm3] 2L_14143580_SNP [dm6]	G	C	4.685e^-5	0.398	INTRON CG17341
3R	12686209	3R_12686209_SNP [dm3] 3R_16860487_SNP [dm6]	A	G	4.712e^-5	0.398	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6334198	X_6334198_SNP [dm3] X_6440165_SNP [dm6]	T	C	4.731e^-5	0.398	INTRON CG42340
2R	10492095	2R_10492095_SNP [dm3] 2R_14604590_SNP [dm6]	C	G	4.777e^-5	0.4	UTR_3_PRIME CG12868 UPSTREAM tra2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5826799	2R_5826799_SNP [dm3] 2R_9939294_SNP [dm6]	T	A	4.926e^-5	0.406	INTRON Mef2	regulatory region REDfly_CRMs
3L	16325335	3L_16325335_SNP [dm3] 3L_16332235_SNP [dm6]	A	T	4.967e^-5	0.406	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16456911	3L_16456911_SNP [dm3] 3L_16463811_SNP [dm6]	T	C	5.038e^-5	0.406	INTRON CG33158	TF binding site BDTNP1_TFBS_twi
3R	12684521	3R_12684521_INS [dm3] 3R_16858799_INS [dm6]	A	ATA	5.055e^-5	0.406	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9435157	2L_9435157_SNP [dm3] 2L_9435157_SNP [dm6]	A	C	5.068e^-5	0.406	UTR_3_PRIME scat UPSTREAM CG3769	TF binding site mE1_TFBS_cad
3R	3867862	3R_3867862_SNP [dm3] 3R_8042140_SNP [dm6]	G	A	5.076e^-5	0.406	DOWNSTREAM CG43060 INTRON CG43060
3R	15245502	3R_15245502_DEL [dm3] 3R_19419780_DEL [dm6]	TTTGGT	T	5.089e^-5	0.406	INTRON CG31221
2L	18405350	2L_18405350_SNP [dm3] 2L_18405350_SNP [dm6]	T	C	5.099e^-5	0.406	DOWNSTREAM CR44487 INTERGENIC
2R	6466482	2R_6466482_SNP [dm3] 2R_10578977_SNP [dm6]	G	A	5.112e^-5	0.406	INTRON psq
3L	16735382	3L_16735382_SNP [dm3] 3L_16742282_SNP [dm6]	A	G	5.136e^-5	0.406	INTERGENIC
2R	14518355	2R_14518355_SNP [dm3] 2R_18630850_SNP [dm6]	G	A	5.152e^-5	0.406	SYNONYMOUS_CODING CG5482
2R	16362367	2R_16362367_SNP [dm3] 2R_20474862_SNP [dm6]	G	A	5.166e^-5	0.406	INTRON CG12484
3R	12681915	3R_12681915_SNP [dm3] 3R_16856193_SNP [dm6]	A	T	5.226e^-5	0.406	UPSTREAM mir-iab-4 DOWNSTREAM mir-iab-8 & 1 other INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12099837	2R_12099837_SNP [dm3] 2R_16212332_SNP [dm6]	T	C	5.265e^-5	0.406	INTRON mrj
2R	14809800	2R_14809800_SNP [dm3] 2R_18922295_SNP [dm6]	A	G	5.272e^-5	0.406	INTRON sano	TF binding site mE1_TFBS_sbb
3L	6282883	3L_6282883_SNP [dm3] 3L_6289783_SNP [dm6]	C	G	5.335e^-5	0.406	INTERGENIC
2R	9268306	2R_9268306_SNP [dm3] 2R_13380801_SNP [dm6]	T	C	5.349e^-5	0.406	INTERGENIC
2R	9268368	2R_9268368_SNP [dm3] 2R_13380863_SNP [dm6]	C	T	5.349e^-5	0.406	INTERGENIC
X	7150094	X_7150094_SNP [dm3] X_7256061_SNP [dm6]	C	T	5.363e^-5	0.406	INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	16276513	3R_16276513_SNP [dm3] 3R_20450791_SNP [dm6]	C	A	5.430e^-5	0.406	INTRON Gfrl
2R	18942409	2R_18942409_SNP [dm3] 2R_23054886_SNP [dm6]	G	T	5.460e^-5	0.406	UPSTREAM CG44252 INTERGENIC
2R	12099831	2R_12099831_SNP [dm3] 2R_16212326_SNP [dm6]	A	G	5.499e^-5	0.406	INTRON mrj
2L	9413733	2L_9413733_DEL [dm3] 2L_9413733_DEL [dm6]	AATTTC	A	5.511e^-5	0.406	INTRON Shawl
3R	18987868	3R_18987868_SNP [dm3] 3R_23162146_SNP [dm6]	A	T	5.544e^-5	0.406	UPSTREAM CG13829 INTERGENIC
2L	12090228	2L_12090228_SNP [dm3] 2L_12090228_SNP [dm6]	C	A	5.550e^-5	0.406	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14835892	2R_14835892_SNP [dm3] 2R_18948387_SNP [dm6]	C	T	5.560e^-5	0.406	INTRON sano
X	7576782	X_7576782_SNP [dm3] X_7682749_SNP [dm6]	G	C	5.564e^-5	0.406	UTR_3_PRIME CHES-1-like DOWNSTREAM CHES-1-like
2L	9649280	2L_9649280_SNP [dm3] 2L_9649280_SNP [dm6]	T	C	5.583e^-5	0.406	SYNONYMOUS_CODING Apoltp
3L	16267549	3L_16267549_SNP [dm3] 3L_16274449_SNP [dm6]	C	T	5.608e^-5	0.406	DOWNSTREAM CG13066 INTERGENIC
2R	14083490	2R_14083490_SNP [dm3] 2R_18195985_SNP [dm6]	A	T	5.609e^-5	0.406	INTERGENIC
2R	14598411	2R_14598411_SNP [dm3] 2R_18710906_SNP [dm6]	T	A	5.615e^-5	0.406	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19670318	3R_19670318_DEL [dm3] 3R_23844596_DEL [dm6]	CAA	C	5.632e^-5	0.406	INTRON CG34355	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3R	19670322	3R_19670322_DEL [dm3] 3R_23844600_DEL [dm6]	GCAC	G	5.632e^-5	0.406	INTRON CG34355	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3R	17678843	3R_17678843_SNP [dm3] 3R_21853121_SNP [dm6]	A	G	5.642e^-5	0.406	INTRON glec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	11494703	2L_11494703_SNP [dm3] 2L_11494703_SNP [dm6]	G	T	5.659e^-5	0.406	INTERGENIC
3L	12316811	3L_12316811_SNP [dm3] 3L_12323711_SNP [dm6]	G	T	5.710e^-5	0.406	INTERGENIC
2R	2475823	2R_2475823_SNP [dm3] 2R_6588318_SNP [dm6]	G	T	5.722e^-5	0.406	INTRON jing
2L	2039677	2L_2039677_SNP [dm3] 2L_2039677_SNP [dm6]	G	C	5.755e^-5	0.406	UPSTREAM Su_dx_ INTRON Su_dx_
3R	11230099	3R_11230099_SNP [dm3] 3R_15404377_SNP [dm6]	G	A	5.823e^-5	0.406	INTRON CG6125
3R	3832867	3R_3832867_SNP [dm3] 3R_8007145_SNP [dm6]	T	A	5.847e^-5	0.406	INTRON CG2767
3R	12686234	3R_12686234_SNP [dm3] 3R_16860512_SNP [dm6]	C	G	5.852e^-5	0.406	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	10501756	2R_10501756_SNP [dm3] 2R_14614251_SNP [dm6]	T	A	5.856e^-5	0.406	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2R	10505423	2R_10505423_SNP [dm3] 2R_14617918_SNP [dm6]	C	T	5.856e^-5	0.406	UTR_5_PRIME Su_var_2-HP2 UPSTREAM Sec61beta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	7098485	3L_7098485_SNP [dm3] 3L_7105385_SNP [dm6]	A	T	5.915e^-5	0.406	INTRON form3
2L	7332852	2L_7332852_SNP [dm3] 2L_7332852_SNP [dm6]	G	T	5.924e^-5	0.406	UPSTREAM Wnt6 INTERGENIC
2R	14918288	2R_14918288_DEL [dm3] 2R_19030783_DEL [dm6]	TACAAT	T	5.929e^-5	0.406	DOWNSTREAM CG43351 INTRON 5-HT1B
2R	17616532	2R_17616532_SNP [dm3] 2R_21729027_SNP [dm6]	T	A	5.941e^-5	0.406	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11494745	2L_11494745_SNP [dm3] 2L_11494745_SNP [dm6]	A	G	5.954e^-5	0.406	INTERGENIC
3R	18832259	3R_18832259_SNP [dm3] 3R_23006537_SNP [dm6]	C	T	5.972e^-5	0.406	INTRON CG34375
3L	9493835	3L_9493835_SNP [dm3] 3L_9500735_SNP [dm6]	C	G	5.983e^-5	0.406	UTR_5_PRIME path INTRON path	TF binding site BDTNP1_TFBS_twi
3L	9294304	3L_9294304_SNP [dm3] 3L_9301204_SNP [dm6]	G	C	5.988e^-5	0.406	INTERGENIC
2L	9611728	2L_9611728_SNP [dm3] 2L_9611728_SNP [dm6]	T	C	6.022e^-5	0.406	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15835939	3L_15835939_SNP [dm3] 3L_15842839_SNP [dm6]	T	G	6.039e^-5	0.406	DOWNSTREAM mir-263b INTRON CG32150
3L	8260839	3L_8260839_SNP [dm3] 3L_8267739_SNP [dm6]	T	A	6.072e^-5	0.406	INTRON Dscam4
2R	18942404	2R_18942404_SNP [dm3] 2R_23054881_SNP [dm6]	C	T	6.099e^-5	0.406	UPSTREAM CG44252 INTERGENIC
3L	6079275	3L_6079275_SNP [dm3] 3L_6086175_SNP [dm6]	C	T	6.112e^-5	0.406	INTRON CG13293
X	19435152	X_19435152_DEL [dm3] X_19541119_DEL [dm6]	TGTTT	T	6.143e^-5	0.406	INTRON CG32532
2R	3679801	2R_3679801_SNP [dm3] 2R_7792296_SNP [dm6]	A	G	6.181e^-5	0.406	SYNONYMOUS_CODING Gapdh1	TF binding site mE1_TFBS_HSA
3L	16283379	3L_16283379_SNP [dm3] 3L_16290279_SNP [dm6]	A	G	6.219e^-5	0.406	SYNONYMOUS_CODING CG13045
2R	6951604	2R_6951604_SNP [dm3] 2R_11064099_SNP [dm6]	A	C	6.246e^-5	0.406	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10509945	2R_10509945_SNP [dm3] 2R_14622440_SNP [dm6]	G	C	6.301e^-5	0.406	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	16733632	3L_16733632_SNP [dm3] 3L_16740532_SNP [dm6]	C	T	6.301e^-5	0.406	INTERGENIC
3L	11267022	3L_11267022_SNP [dm3] 3L_11273922_SNP [dm6]	A	G	6.307e^-5	0.406	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9657290	2L_9657290_SNP [dm3] 2L_9657290_SNP [dm6]	T	G	6.326e^-5	0.406	UTR_3_PRIME CG33299
2R	9434627	2R_9434627_SNP [dm3] 2R_13547122_SNP [dm6]	A	G	6.342e^-5	0.406	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16868646	2R_16868646_SNP [dm3] 2R_20981141_SNP [dm6]	C	T	6.347e^-5	0.406	INTRON CG9313	TF binding site mE1_TFBS_cad
2R	6466259	2R_6466259_SNP [dm3] 2R_10578754_SNP [dm6]	G	C	6.350e^-5	0.406	INTRON psq
3L	16283382	3L_16283382_SNP [dm3] 3L_16290282_SNP [dm6]	G	A	6.366e^-5	0.406	SYNONYMOUS_CODING CG13045
2R	17028843	2R_17028843_DEL [dm3] 2R_21141338_DEL [dm6]	ATGGAAACTAGCTTTCA...	A	6.407e^-5	0.406	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26959872	3R_26959872_SNP [dm3] 3R_31134150_SNP [dm6]	G	A	6.425e^-5	0.406	UPSTREAM Gycbeta100B INTERGENIC
2R	16056408	2R_16056408_SNP [dm3] 2R_20168903_SNP [dm6]	C	T	6.467e^-5	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13742947	X_13742947_SNP [dm3] X_13848914_SNP [dm6]	A	C	6.475e^-5	0.406	UTR_3_PRIME mamo
2L	9611719	2L_9611719_SNP [dm3] 2L_9611719_SNP [dm6]	T	C	6.479e^-5	0.406	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11752903	2L_11752903_DEL [dm3] 2L_11752903_DEL [dm6]	AA	A	6.491e^-5	0.406	DOWNSTREAM CG42470 & 1 other INTERGENIC
3R	1713150	3R_1713150_SNP [dm3] 3R_5887428_SNP [dm6]	G	C	6.514e^-5	0.406	INTRON CG34113
3R	16276555	3R_16276555_SNP [dm3] 3R_20450833_SNP [dm6]	G	A	6.521e^-5	0.406	INTRON Gfrl
X	5146250	X_5146250_SNP [dm3] X_5252217_SNP [dm6]	T	A	6.527e^-5	0.406	UTR_3_PRIME CG15465 & 1 other	TF binding site mE1_TFBS_kn
3L	1867708	3L_1867708_SNP [dm3] 3L_1867708_SNP [dm6]	A	C	6.550e^-5	0.406	UTR_3_PRIME CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12680156	2L_12680156_SNP [dm3] 2L_12680156_SNP [dm6]	C	T	6.560e^-5	0.406	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16270103	3L_16270103_SNP [dm3] 3L_16277003_SNP [dm6]	C	A	6.627e^-5	0.408	UPSTREAM CG13065 INTERGENIC
2R	12475751	2R_12475751_SNP [dm3] 2R_16588246_SNP [dm6]	A	T	6.699e^-5	0.408	NON_SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4807937	3R_4807937_SNP [dm3] 3R_8982215_SNP [dm6]	G	A	6.725e^-5	0.408	DOWNSTREAM RagA-B INTRON CAHbeta	TF binding site mE1_TFBS_sens
3R	13025242	3R_13025242_SNP [dm3] 3R_17199520_SNP [dm6]	T	G	6.733e^-5	0.408	INTRON Mur89F
2R	8389199	2R_8389199_SNP [dm3] 2R_12501694_SNP [dm6]	C	T	6.767e^-5	0.408	DOWNSTREAM s-cup INTRON fdl
3L	8260811	3L_8260811_SNP [dm3] 3L_8267711_SNP [dm6]	T	A	6.772e^-5	0.408	INTRON Dscam4
2R	10201847	2R_10201847_SNP [dm3] 2R_14314342_SNP [dm6]	C	A	6.782e^-5	0.408	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25302466	3R_25302466_SNP [dm3] 3R_29476744_SNP [dm6]	T	A	6.815e^-5	0.408	INTRON Ptp99A
3L	14075442	3L_14075442_SNP [dm3] 3L_14082342_SNP [dm6]	T	C	6.816e^-5	0.408	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10514046	2R_10514046_SNP [dm3] 2R_14626541_SNP [dm6]	A	G	6.881e^-5	0.408	INTERGENIC
3L	10666654	3L_10666654_SNP [dm3] 3L_10673554_SNP [dm6]	A	G	6.896e^-5	0.408	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7905095	3L_7905095_SNP [dm3] 3L_7911995_SNP [dm6]	A	C	6.909e^-5	0.408	UPSTREAM CG8281 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	6.925e^-5	0.408	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11183802	2L_11183802_SNP [dm3] 2L_11183802_SNP [dm6]	T	C	6.955e^-5	0.408	INTRON Ca-beta
2R	12333495	2R_12333495_SNP [dm3] 2R_16445990_SNP [dm6]	A	C	6.957e^-5	0.408	UTR_5_PRIME CG15925
2L	13544529	2L_13544529_SNP [dm3] 2L_13544529_SNP [dm6]	A	T	6.981e^-5	0.408	DOWNSTREAM CG16853 INTRON B4
2L	3953538	2L_3953538_SNP [dm3] 2L_3953538_SNP [dm6]	A	T	7.022e^-5	0.408	INTRON fred
3R	24030798	3R_24030798_SNP [dm3] 3R_28205076_SNP [dm6]	G	T	7.029e^-5	0.408	INTRON CG34354
2R	17118952	2R_17118952_SNP [dm3] 2R_21231447_SNP [dm6]	G	C	7.061e^-5	0.408	INTRON ASPP
2L	6512023	2L_6512023_SNP [dm3] 2L_6512023_SNP [dm6]	C	T	7.083e^-5	0.408	INTRON CG31637
X	15539910	X_15539910_SNP [dm3] X_15645877_SNP [dm6]	G	C	7.118e^-5	0.408	DOWNSTREAM CG8117 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	15235172	3R_15235172_SNP [dm3] 3R_19409450_SNP [dm6]	C	T	7.149e^-5	0.408	SPLICE_SITE_REGION CG11626 INTRON CG11626
3R	18765194	3R_18765194_SNP [dm3] 3R_22939472_SNP [dm6]	T	G	7.151e^-5	0.408	INTRON klg
3R	1713121	3R_1713121_SNP [dm3] 3R_5887399_SNP [dm6]	A	G	7.156e^-5	0.408	INTRON CG34113
2R	12368056	2R_12368056_SNP [dm3] 2R_16480551_SNP [dm6]	T	A	7.178e^-5	0.408	INTERGENIC
X	12148977	X_12148977_SNP [dm3] X_12254944_SNP [dm6]	C	G	7.191e^-5	0.408	INTRON Ten-a
2R	14598183	2R_14598183_SNP [dm3] 2R_18710678_SNP [dm6]	T	C	7.192e^-5	0.408	UPSTREAM pncr016:2R INTRON CG15087	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18423939	2L_18423939_SNP [dm3] 2L_18423939_SNP [dm6]	C	T	7.235e^-5	0.408	INTERGENIC
3L	7903933	3L_7903933_SNP [dm3] 3L_7910833_SNP [dm6]	T	A	7.242e^-5	0.408	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8911635	2R_8911635_DEL [dm3] 2R_13024130_DEL [dm6]	GATGGG	G	7.259e^-5	0.408	INTERGENIC
2R	9816989	2R_9816989_SNP [dm3] 2R_13929484_SNP [dm6]	C	T	7.288e^-5	0.408	INTRON shot
3R	12346842	3R_12346842_SNP [dm3] 3R_16521120_SNP [dm6]	A	C	7.334e^-5	0.408	INTRON CG42342	TF binding site mE1_TFBS_cad
3R	13959046	3R_13959046_SNP [dm3] 3R_18133324_SNP [dm6]	G	A	7.381e^-5	0.408	UTR_3_PRIME sr
2R	17305067	2R_17305067_SNP [dm3] 2R_21417562_SNP [dm6]	T	C	7.390e^-5	0.408	UPSTREAM Sdc INTRON Sdc
2L	9688068	2L_9688068_SNP [dm3] 2L_9688068_SNP [dm6]	C	T	7.394e^-5	0.408	INTRON Pka-C1	TF binding site mE1_TFBS_inv
3L	3863581	3L_3863581_SNP [dm3] 3L_3863581_SNP [dm6]	C	T	7.405e^-5	0.408	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3863583	3L_3863583_SNP [dm3] 3L_3863583_SNP [dm6]	G	A	7.405e^-5	0.408	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18878162	X_18878162_SNP [dm3] X_18984129_SNP [dm6]	A	C	7.447e^-5	0.408	INTRON CG43759
2L	3953528	2L_3953528_SNP [dm3] 2L_3953528_SNP [dm6]	C	A	7.448e^-5	0.408	INTRON fred
2R	6087584	2R_6087584_SNP [dm3] 2R_10200079_SNP [dm6]	A	T	7.464e^-5	0.408	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15967385	2L_15967385_SNP [dm3] 2L_15967385_SNP [dm6]	T	C	7.484e^-5	0.408	INTERGENIC
2L	12780664	2L_12780664_INS [dm3] 2L_12780664_INS [dm6]	G	GT	7.502e^-5	0.408	INTERGENIC
2L	9435477	2L_9435477_SNP [dm3] 2L_9435477_SNP [dm6]	C	A	7.565e^-5	0.409	UTR_5_PRIME CG3769 DOWNSTREAM scat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9435771	2L_9435771_SNP [dm3] 2L_9435771_SNP [dm6]	C	T	7.565e^-5	0.409	DOWNSTREAM scat INTRON CG3769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3374957	2R_3374957_SNP [dm3] 2R_7487452_SNP [dm6]	C	T	7.601e^-5	0.41	INTRON wech	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	9435780	2L_9435780_SNP [dm3] 2L_9435780_SNP [dm6]	T	C	7.634e^-5	0.41	DOWNSTREAM scat INTRON CG3769	TF binding site BDTNP1_TFBS_dl
X	15037965	X_15037965_SNP [dm3] X_15143932_SNP [dm6]	C	A	7.685e^-5	0.411	INTRON CG9095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15959500	3L_15959500_SNP [dm3] 3L_15966400_SNP [dm6]	C	A	7.687e^-5	0.411	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7223228	2L_7223228_DEL [dm3] 2L_7223228_DEL [dm6]	TT	T	7.759e^-5	0.413	UPSTREAM ico DOWNSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15333010	3R_15333010_SNP [dm3] 3R_19507288_SNP [dm6]	G	A	7.853e^-5	0.417	INTRON Dys
2L	7225410	2L_7225410_SNP [dm3] 2L_7225410_SNP [dm6]	C	T	7.865e^-5	0.417	DOWNSTREAM Ndae1 INTRON Ndae1
3L	2156900	3L_2156900_SNP [dm3] 3L_2156900_SNP [dm6]	T	A	7.904e^-5	0.418	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
2L	3953539	2L_3953539_SNP [dm3] 2L_3953539_SNP [dm6]	A	C	7.978e^-5	0.42	INTRON fred
3R	14874396	3R_14874396_SNP [dm3] 3R_19048674_SNP [dm6]	G	A	7.996e^-5	0.42	SYNONYMOUS_CODING cdi	TF binding site mE1_TFBS_chinmo
2L	9435519	2L_9435519_SNP [dm3] 2L_9435519_SNP [dm6]	C	T	8.023e^-5	0.42	NON_SYNONYMOUS_CODING CG3769 DOWNSTREAM scat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7332879	2L_7332879_SNP [dm3] 2L_7332879_SNP [dm6]	A	G	8.034e^-5	0.42	UPSTREAM Wnt6 INTERGENIC
3L	16270127	3L_16270127_SNP [dm3] 3L_16277027_SNP [dm6]	A	C	8.120e^-5	0.423	UPSTREAM CG13065 INTERGENIC
3R	14574123	3R_14574123_SNP [dm3] 3R_18748401_SNP [dm6]	C	G	8.152e^-5	0.423	NON_SYNONYMOUS_CODING gwl INTRON gwl	TF binding site mE1_TFBS_cad
3R	17961005	3R_17961005_SNP [dm3] 3R_22135283_SNP [dm6]	A	G	8.156e^-5	0.423	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	13248094	3L_13248094_SNP [dm3] 3L_13254994_SNP [dm6]	T	A	8.192e^-5	0.423	INTRON caps
3R	18856261	3R_18856261_SNP [dm3] 3R_23030539_SNP [dm6]	C	A	8.216e^-5	0.423	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11336864	3L_11336864_DEL [dm3] 3L_11343764_DEL [dm6]	AAGCGGTGCGG...	A	8.245e^-5	0.423	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
2L	9422022	2L_9422022_SNP [dm3] 2L_9422022_SNP [dm6]	C	G	8.267e^-5	0.423	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11049516	X_11049516_DEL [dm3] X_11155483_DEL [dm6]	ATA	A	8.274e^-5	0.423	INTRON Dlic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10499032	2R_10499032_SNP [dm3] 2R_14611527_SNP [dm6]	T	A	8.326e^-5	0.424	INTRON Su_var_2-HP2
2L	9435202	2L_9435202_SNP [dm3] 2L_9435202_SNP [dm6]	C	G	8.395e^-5	0.425	UTR_3_PRIME scat UPSTREAM CG3769	TF binding site BDTNP1_TFBS_dl
2L	6203706	2L_6203706_SNP [dm3] 2L_6203706_SNP [dm6]	G	T	8.401e^-5	0.425	INTRON CG34380	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	17955600	X_17955600_SNP [dm3] X_18061567_SNP [dm6]	G	A	8.402e^-5	0.425	INTRON Sh
2L	18423949	2L_18423949_SNP [dm3] 2L_18423949_SNP [dm6]	G	A	8.485e^-5	0.425	INTERGENIC
X	6334201	X_6334201_SNP [dm3] X_6440168_SNP [dm6]	C	G	8.501e^-5	0.425	INTRON CG42340
3L	15835777	3L_15835777_SNP [dm3] 3L_15842677_SNP [dm6]	C	A	8.536e^-5	0.425	DOWNSTREAM mir-263b INTRON CG32150
2L	10495593	2L_10495593_SNP [dm3] 2L_10495593_SNP [dm6]	A	G	8.541e^-5	0.425	INTRON Myo31DF
2L	8888960	2L_8888960_SNP [dm3] 2L_8888960_SNP [dm6]	T	G	8.568e^-5	0.425	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	6209281	2R_6209281_SNP [dm3] 2R_10321776_SNP [dm6]	C	A	8.569e^-5	0.425	UTR_3_PRIME Ndg DOWNSTREAM CG42732
3R	21628619	3R_21628619_DEL [dm3] 3R_25802897_DEL [dm6]	AA	A	8.597e^-5	0.425	INTERGENIC
3R	18856217	3R_18856217_SNP [dm3] 3R_23030495_SNP [dm6]	T	C	8.641e^-5	0.425	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11752886	2L_11752886_SNP [dm3] 2L_11752886_SNP [dm6]	A	C	8.648e^-5	0.425	DOWNSTREAM CG42470 & 1 other INTERGENIC
2L	14169402	2L_14169402_SNP [dm3] 2L_14169402_SNP [dm6]	C	A	8.652e^-5	0.425	INTRON CG43333
2R	12202234	2R_12202234_SNP [dm3] 2R_16314729_SNP [dm6]	A	G	8.687e^-5	0.425	INTRON Nox	TF binding site mE1_TFBS_cad
3L	12276744	3L_12276744_SNP [dm3] 3L_12283644_SNP [dm6]	T	C	8.691e^-5	0.425	INTERGENIC
3R	26820384	3R_26820384_SNP [dm3] 3R_30994662_SNP [dm6]	G	A	8.702e^-5	0.425	INTRON 5-HT7
2L	4859596	2L_4859596_SNP [dm3] 2L_4859596_SNP [dm6]	T	C	8.832e^-5	0.428	INTRON pog
2R	17152649	2R_17152649_SNP [dm3] 2R_21265144_SNP [dm6]	A	T	8.834e^-5	0.428	UTR_3_PRIME CG30391 INTRON Rgk3
3L	16268108	3L_16268108_SNP [dm3] 3L_16275008_SNP [dm6]	G	A	8.837e^-5	0.428	INTERGENIC
3L	15005967	3L_15005967_SNP [dm3] 3L_15012867_SNP [dm6]	A	T	8.846e^-5	0.428	INTRON Reck
2L	8804023	2L_8804023_SNP [dm3] 2L_8804023_SNP [dm6]	G	A	8.892e^-5	0.428	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5643145	3R_5643145_SNP [dm3] 3R_9817423_SNP [dm6]	A	T	8.893e^-5	0.428	UPSTREAM CG16904 DOWNSTREAM CG9459 INTERGENIC
X	9549406	X_9549406_SNP [dm3] X_9655373_SNP [dm6]	G	A	8.959e^-5	0.43	INTRON l_1_G0232
2R	14603484	2R_14603484_SNP [dm3] 2R_18715979_SNP [dm6]	T	A	9.001e^-5	0.431	INTERGENIC
2L	9435381	2L_9435381_SNP [dm3] 2L_9435381_SNP [dm6]	G	A	9.023e^-5	0.431	UPSTREAM CG3769 DOWNSTREAM scat INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9435365	2L_9435365_SNP [dm3] 2L_9435365_SNP [dm6]	G	T	9.071e^-5	0.431	UPSTREAM CG3769 DOWNSTREAM scat INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9299641	3L_9299641_SNP [dm3] 3L_9306541_SNP [dm6]	C	T	9.084e^-5	0.431	INTERGENIC
2R	11935643	2R_11935643_SNP [dm3] 2R_16048138_SNP [dm6]	G	T	9.106e^-5	0.431	SYNONYMOUS_CODING CG8405 DOWNSTREAM SP2353	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11493438	2L_11493438_SNP [dm3] 2L_11493438_SNP [dm6]	C	A	9.224e^-5	0.436	INTERGENIC
3L	8663052	3L_8663052_SNP [dm3] 3L_8669952_SNP [dm6]	C	T	9.339e^-5	0.44	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1295071	2L_1295071_SNP [dm3] 2L_1295071_SNP [dm6]	G	T	9.357e^-5	0.44	UTR_3_PRIME robo3 DOWNSTREAM robo3
2L	9762489	2L_9762489_SNP [dm3] 2L_9762489_SNP [dm6]	C	T	9.433e^-5	0.442	UTR_3_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13020744	3R_13020744_SNP [dm3] 3R_17195022_SNP [dm6]	G	C	9.460e^-5	0.442	INTRON Mur89F
X	3022065	X_3022065_SNP [dm3] X_3128032_SNP [dm6]	G	C	9.466e^-5	0.442	UPSTREAM kirre INTRON kirre
2L	16488450	2L_16488450_SNP [dm3] 2L_16488450_SNP [dm6]	T	C	9.496e^-5	0.442	NON_SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv
2L	9611824	2L_9611824_SNP [dm3] 2L_9611824_SNP [dm6]	C	G	9.605e^-5	0.445	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7905097	3L_7905097_SNP [dm3] 3L_7911997_SNP [dm6]	A	T	9.607e^-5	0.445	UPSTREAM CG8281 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8563135	2L_8563135_SNP [dm3] 2L_8563135_SNP [dm6]	G	A	9.639e^-5	0.445	INTRON Sema-1a
2R	5851715	2R_5851715_SNP [dm3] 2R_9964210_SNP [dm6]	G	A	9.687e^-5	0.446	SYNONYMOUS_CODING CG1418 DOWNSTREAM Pal1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8836317	2L_8836317_SNP [dm3] 2L_8836317_SNP [dm6]	G	A	9.762e^-5	0.447	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	20055848	2R_20055848_SNP [dm3] 2R_24168325_SNP [dm6]	C	T	9.763e^-5	0.447	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2903011	2L_2903011_DEL [dm3] 2L_2903011_DEL [dm6]	GGGGG	G	9.800e^-5	0.447	INTRON lilli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7177138	2L_7177138_SNP [dm3] 2L_7177138_SNP [dm6]	G	A	9.821e^-5	0.447	DOWNSTREAM CR44613 INTERGENIC
3R	26295304	3R_26295304_SNP [dm3] 3R_30469582_SNP [dm6]	G	A	9.823e^-5	0.447	INTRON PH4alphaEFB
2L	11752612	2L_11752612_SNP [dm3] 2L_11752612_SNP [dm6]	G	A	9.898e^-5	0.449	DOWNSTREAM CG42470 INTERGENIC
2R	14726347	2R_14726347_SNP [dm3] 2R_18838842_SNP [dm6]	C	T	9.973e^-5	0.449	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6979655	3L_6979655_SNP [dm3] 3L_6986555_SNP [dm6]	T	A	9.991e^-5	0.449	INTERGENIC
2R	10512334	2R_10512334_SNP [dm3] 2R_14624829_SNP [dm6]	A	T	1.002e^-4	0.449	DOWNSTREAM snoRNA:Me28S-G2703b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2L	16491525	2L_16491525_SNP [dm3] 2L_16491525_SNP [dm6]	A	T	1.005e^-4	0.449	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	9506617	2L_9506617_SNP [dm3] 2L_9506617_SNP [dm6]	A	T	1.005e^-4	0.449	INTRON CG33298
2L	11496068	2L_11496068_SNP [dm3] 2L_11496068_SNP [dm6]	T	C	1.007e^-4	0.449	DOWNSTREAM CG6488 INTERGENIC
3L	10666605	3L_10666605_SNP [dm3] 3L_10673505_SNP [dm6]	C	T	1.008e^-4	0.449	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9649237	2L_9649237_SNP [dm3] 2L_9649237_SNP [dm6]	T	G	1.011e^-4	0.449	SYNONYMOUS_CODING Apoltp
3R	26167384	3R_26167384_SNP [dm3] 3R_30341662_SNP [dm6]	T	A	1.011e^-4	0.449	INTRON hdc
X	1880246	X_1880246_SNP [dm3] X_1986213_SNP [dm6]	G	A	1.012e^-4	0.449	INTRON Hr4
2R	6694260	2R_6694260_SNP [dm3] 2R_10806755_SNP [dm6]	T	C	1.019e^-4	0.449	UPSTREAM wde INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7223261	2L_7223261_SNP [dm3] 2L_7223261_SNP [dm6]	T	G	1.026e^-4	0.449	UPSTREAM ico DOWNSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	12682495	3R_12682495_SNP [dm3] 3R_16856773_SNP [dm6]	C	T	1.030e^-4	0.449	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14598040	2R_14598040_SNP [dm3] 2R_18710535_SNP [dm6]	C	T	1.032e^-4	0.449	SYNONYMOUS_CODING CG15087 UPSTREAM pncr016:2R	TF binding site BDTNP1_TFBS_dl
2R	9675734	2R_9675734_SNP [dm3] 2R_13788229_SNP [dm6]	T	C	1.032e^-4	0.449	DOWNSTREAM Cpr50Ca INTERGENIC
2L	9611755	2L_9611755_SNP [dm3] 2L_9611755_SNP [dm6]	T	C	1.035e^-4	0.449	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8359178	2L_8359178_SNP [dm3] 2L_8359178_SNP [dm6]	G	A	1.036e^-4	0.449	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3373801	2R_3373801_SNP [dm3] 2R_7486296_SNP [dm6]	C	T	1.037e^-4	0.449	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25469468	3R_25469468_SNP [dm3] 3R_29643746_SNP [dm6]	G	C	1.037e^-4	0.449	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	9433646	2L_9433646_SNP [dm3] 2L_9433646_SNP [dm6]	C	T	1.038e^-4	0.449	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16489457	2L_16489457_SNP [dm3] 2L_16489457_SNP [dm6]	G	C	1.039e^-4	0.449	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	14163807	2L_14163807_SNP [dm3] 2L_14163807_SNP [dm6]	T	C	1.042e^-4	0.449	UTR_3_PRIME CG43333 UPSTREAM CG43332
3L	9870446	3L_9870446_SNP [dm3] 3L_9877346_SNP [dm6]	A	G	1.046e^-4	0.449	DOWNSTREAM CR45406 INTERGENIC
2L	7632632	2L_7632632_SNP [dm3] 2L_7632632_SNP [dm6]	G	A	1.048e^-4	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16279681	3R_16279681_SNP [dm3] 3R_20453959_SNP [dm6]	G	T	1.049e^-4	0.449	INTRON Gfrl
3R	12349872	3R_12349872_SNP [dm3] 3R_16524150_SNP [dm6]	C	A	1.057e^-4	0.451	INTRON CG42342	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3L	2113886	3L_2113886_SNP [dm3] 3L_2113886_SNP [dm6]	G	A	1.057e^-4	0.451	INTRON sls
3R	5756986	3R_5756986_SNP [dm3] 3R_9931264_SNP [dm6]	G	T	1.073e^-4	0.453	INTRON Glut4EF
3L	16733330	3L_16733330_SNP [dm3] 3L_16740230_SNP [dm6]	C	T	1.076e^-4	0.453	DOWNSTREAM CG9701 INTERGENIC
3R	24034523	3R_24034523_SNP [dm3] 3R_28208801_SNP [dm6]	G	A	1.078e^-4	0.453	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2147383	3L_2147383_SNP [dm3] 3L_2147383_SNP [dm6]	T	A	1.078e^-4	0.453	INTRON zormin
3L	16276690	3L_16276690_DEL [dm3] 3L_16283590_DEL [dm6]	TTTA	T	1.080e^-4	0.453	INTRON CG13048
3R	24113625	3R_24113625_SNP [dm3] 3R_28287903_SNP [dm6]	A	G	1.081e^-4	0.453	INTERGENIC
2L	4100534	2L_4100534_DEL [dm3] 2L_4100534_DEL [dm6]	AA	T	1.081e^-4	0.453	INTRON ed
2R	10501631	2R_10501631_SNP [dm3] 2R_14614126_SNP [dm6]	A	G	1.082e^-4	0.453	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2L	14143544	2L_14143544_SNP [dm3] 2L_14143544_SNP [dm6]	C	A	1.092e^-4	0.456	INTRON CG17341
2R	14823023	2R_14823023_SNP [dm3] 2R_18935518_SNP [dm6]	G	A	1.093e^-4	0.456	INTRON sano
3L	9876156	3L_9876156_SNP [dm3] 3L_9883056_SNP [dm6]	C	G	1.100e^-4	0.458	NON_SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16251281	3L_16251281_SNP [dm3] 3L_16258181_SNP [dm6]	G	C	1.107e^-4	0.459	UPSTREAM CG13054 DOWNSTREAM CG13053 INTERGENIC
3L	16269897	3L_16269897_SNP [dm3] 3L_16276797_SNP [dm6]	A	C	1.108e^-4	0.459	UPSTREAM CG13065 INTERGENIC
3R	16276934	3R_16276934_SNP [dm3] 3R_20451212_SNP [dm6]	G	C	1.121e^-4	0.463	INTRON Gfrl
3R	17943405	3R_17943405_SNP [dm3] 3R_22117683_SNP [dm6]	C	G	1.124e^-4	0.463	NON_SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
2R	5826362	2R_5826362_SNP [dm3] 2R_9938857_SNP [dm6]	G	A	1.132e^-4	0.464	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	499699	3R_499699_SNP [dm3] 3R_4673977_SNP [dm6]	A	T	1.133e^-4	0.464	INTRON CG43427 EXON CR44157
2L	11124981	2L_11124981_SNP [dm3] 2L_11124981_SNP [dm6]	A	C	1.139e^-4	0.464	INTRON Nup160
2L	16869287	2L_16869287_INS [dm3] 2L_16869287_INS [dm6]	C	TT	1.140e^-4	0.464	UPSTREAM CR31781 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10775901	2R_10775901_SNP [dm3] 2R_14888396_SNP [dm6]	C	T	1.141e^-4	0.464	SYNONYMOUS_CODING Cyp6a8
2R	1575518	2R_1575518_SNP [dm3] 2R_5688013_SNP [dm6]	T	C	1.142e^-4	0.464	UTR_5_PRIME scaf
2R	10448025	2R_10448025_SNP [dm3] 2R_14560520_SNP [dm6]	C	T	1.144e^-4	0.464	INTRON ttv
2R	18490091	2R_18490091_SNP [dm3] 2R_22602586_SNP [dm6]	A	G	1.149e^-4	0.464	NON_SYNONYMOUS_CODING CG4294
2R	14916673	2R_14916673_SNP [dm3] 2R_19029168_SNP [dm6]	G	C	1.150e^-4	0.464	UTR_5_PRIME 5-HT1B UPSTREAM CG43351	TF binding site mE1_TFBS_HSA
X	17585421	X_17585421_SNP [dm3] X_17691388_SNP [dm6]	C	G	1.151e^-4	0.464	INTRON chas
2R	17856400	2R_17856400_SNP [dm3] 2R_21968895_SNP [dm6]	G	T	1.158e^-4	0.466	INTRON ppk9
2L	6349489	2L_6349489_SNP [dm3] 2L_6349489_SNP [dm6]	G	T	1.169e^-4	0.469	UTR_3_PRIME CG9498
2R	16191192	2R_16191192_SNP [dm3] 2R_20303687_SNP [dm6]	T	C	1.172e^-4	0.469	DOWNSTREAM CR44640 & 2 others INTERGENIC
3R	12679768	3R_12679768_SNP [dm3] 3R_16854046_SNP [dm6]	G	A	1.174e^-4	0.469	DOWNSTREAM iab-8 INTRON iab-8 & 1 other EXON iab-4
2R	10510762	2R_10510762_SNP [dm3] 2R_14623257_SNP [dm6]	T	G	1.181e^-4	0.47	UPSTREAM snoRNA:Me28S-A992 & 4 others DOWNSTREAM snoRNA:Me28S-C3227b & 3 others INTRON Uhg5	TF binding site mE1_TFBS_zfh1
2L	9649270	2L_9649270_SNP [dm3] 2L_9649270_SNP [dm6]	G	A	1.182e^-4	0.47	SYNONYMOUS_CODING Apoltp
2R	5826045	2R_5826045_SNP [dm3] 2R_9938540_SNP [dm6]	A	C	1.182e^-4	0.47	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3553656	2L_3553656_SNP [dm3] 2L_3553656_SNP [dm6]	T	G	1.187e^-4	0.47	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2829811	3L_2829811_SNP [dm3] 3L_2829811_SNP [dm6]	G	C	1.187e^-4	0.47	INTRON CG43444
3L	6979658	3L_6979658_SNP [dm3] 3L_6986558_SNP [dm6]	T	G	1.194e^-4	0.471	INTERGENIC
3L	16262679	3L_16262679_SNP [dm3] 3L_16269579_SNP [dm6]	C	T	1.200e^-4	0.472	SYNONYMOUS_CODING CG13068 DOWNSTREAM CG34248
3R	24034517	3R_24034517_SNP [dm3] 3R_28208795_SNP [dm6]	G	T	1.200e^-4	0.472	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	6340083	2L_6340083_SNP [dm3] 2L_6340083_SNP [dm6]	A	G	1.204e^-4	0.472	INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	7203257	2L_7203257_SNP [dm3] 2L_7203257_SNP [dm6]	A	G	1.215e^-4	0.476	INTRON CG4502	TF binding site BDTNP1_TFBS_dl
2L	15918477	2L_15918477_INS [dm3] 2L_15918477_INS [dm6]	T	TT	1.218e^-4	0.476	DOWNSTREAM CG13244 INTRON beat-Ib
2L	10899633	2L_10899633_SNP [dm3] 2L_10899633_SNP [dm6]	C	T	1.226e^-4	0.476	DOWNSTREAM CG14070 INTERGENIC
2R	9972674	2R_9972674_SNP [dm3] 2R_14085169_SNP [dm6]	A	C	1.226e^-4	0.476	INTRON Prosap	TF binding site mE1_TFBS_bab1
X	11952376	X_11952376_SNP [dm3] X_12058343_SNP [dm6]	C	T	1.227e^-4	0.476	INTRON CR43960 & 1 other
3R	19659897	3R_19659897_SNP [dm3] 3R_23834175_SNP [dm6]	A	C	1.234e^-4	0.476	INTRON CG34355
3R	13024518	3R_13024518_SNP [dm3] 3R_17198796_SNP [dm6]	T	A	1.237e^-4	0.476	INTRON Mur89F
3R	12882775	3R_12882775_SNP [dm3] 3R_17057053_SNP [dm6]	A	G	1.237e^-4	0.476	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6525898	3L_6525898_SNP [dm3] 3L_6532798_SNP [dm6]	T	C	1.240e^-4	0.476	DOWNSTREAM CG32396 INTRON sfl
3L	7904825	3L_7904825_SNP [dm3] 3L_7911725_SNP [dm6]	G	A	1.241e^-4	0.476	START_GAINED pbl UTR_5_PRIME pbl UPSTREAM CG8281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6459236	2L_6459236_SNP [dm3] 2L_6459236_SNP [dm6]	T	G	1.241e^-4	0.476	UTR_3_PRIME CG16947 DOWNSTREAM CG16947 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	6132085	2L_6132085_SNP [dm3] 2L_6132085_SNP [dm6]	T	C	1.248e^-4	0.477	INTRON CG9222
3L	15835959	3L_15835959_SNP [dm3] 3L_15842859_SNP [dm6]	G	T	1.249e^-4	0.477	DOWNSTREAM mir-263b INTRON CG32150
2L	6132076	2L_6132076_SNP [dm3] 2L_6132076_SNP [dm6]	A	T	1.252e^-4	0.477	INTRON CG9222
3R	13596273	3R_13596273_SNP [dm3] 3R_17770551_SNP [dm6]	A	G	1.253e^-4	0.477	SYNONYMOUS_CODING CG43102
2R	15824243	2R_15824243_INS [dm3] 2R_19936738_INS [dm6]	C	CCA	1.268e^-4	0.481	INTERGENIC
2L	7921341	2L_7921341_SNP [dm3] 2L_7921341_SNP [dm6]	G	A	1.270e^-4	0.481	INTRON Snoo
2R	18943116	2R_18943116_SNP [dm3] 2R_23055593_SNP [dm6]	G	A	1.286e^-4	0.486	UTR_5_PRIME CG44252 INTRON CG44252
3R	19925976	3R_19925976_SNP [dm3] 3R_24100254_SNP [dm6]	C	T	1.295e^-4	0.488	INTRON 4EHP
2L	16488469	2L_16488469_SNP [dm3] 2L_16488469_SNP [dm6]	T	C	1.296e^-4	0.488	SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv
3R	12683162	3R_12683162_SNP [dm3] 3R_16857440_SNP [dm6]	A	G	1.298e^-4	0.488	DOWNSTREAM iab-4 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14601787	2R_14601787_SNP [dm3] 2R_18714282_SNP [dm6]	C	A	1.300e^-4	0.488	INTERGENIC
3L	16255754	3L_16255754_SNP [dm3] 3L_16262654_SNP [dm6]	T	G	1.311e^-4	0.49	UPSTREAM CG13071 & 1 other INTERGENIC
3R	24653569	3R_24653569_SNP [dm3] 3R_28827847_SNP [dm6]	A	T	1.312e^-4	0.49	UPSTREAM WASp INTRON WASp
2R	12475806	2R_12475806_SNP [dm3] 2R_16588301_SNP [dm6]	A	G	1.315e^-4	0.49	INTRON CG8311	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4860275	X_4860275_SNP [dm3] X_4966242_SNP [dm6]	T	G	1.320e^-4	0.49	INTRON CR44833	regulatory region REDfly_CRMs
3R	26998754	3R_26998754_SNP [dm3] 3R_31173032_SNP [dm6]	T	C	1.321e^-4	0.49	INTRON Gycbeta100B
X	20043772	X_20043772_SNP [dm3] X_20149739_SNP [dm6]	C	T	1.322e^-4	0.49	INTRON CG9572
3R	4057983	3R_4057983_SNP [dm3] 3R_8232261_SNP [dm6]	C	T	1.330e^-4	0.491	UPSTREAM CR45551 DOWNSTREAM CR45549 INTERGENIC
3R	15528969	3R_15528969_SNP [dm3] 3R_19703247_SNP [dm6]	G	A	1.331e^-4	0.491	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9762479	2L_9762479_SNP [dm3] 2L_9762479_SNP [dm6]	G	C	1.333e^-4	0.491	UTR_3_PRIME Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14601985	2R_14601985_SNP [dm3] 2R_18714480_SNP [dm6]	A	G	1.340e^-4	0.493	INTERGENIC
3R	726537	3R_726537_SNP [dm3] 3R_4900815_SNP [dm6]	T	C	1.349e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9606643	2L_9606643_SNP [dm3] 2L_9606643_SNP [dm6]	C	T	1.350e^-4	0.495	INTERGENIC	regulatory region REDfly_CRMs
2R	8445225	2R_8445225_SNP [dm3] 2R_12557720_SNP [dm6]	C	T	1.354e^-4	0.495	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad
2L	11732195	2L_11732195_SNP [dm3] 2L_11732195_SNP [dm6]	T	G	1.356e^-4	0.495	INTERGENIC
3L	16257493	3L_16257493_SNP [dm3] 3L_16264393_SNP [dm6]	A	T	1.361e^-4	0.495	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	7717304	3L_7717304_SNP [dm3] 3L_7724204_SNP [dm6]	G	A	1.362e^-4	0.495	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5684668	X_5684668_SNP [dm3] X_5790635_SNP [dm6]	T	A	1.379e^-4	0.497	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CR44832	TF binding site mE1_TFBS_cad
3R	16282433	3R_16282433_SNP [dm3] 3R_20456711_SNP [dm6]	A	G	1.379e^-4	0.497	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi
2R	18505873	2R_18505873_SNP [dm3] 2R_22618368_SNP [dm6]	C	T	1.384e^-4	0.497	INTRON CG33143
2R	19615908	2R_19615908_SNP [dm3] 2R_23728385_SNP [dm6]	C	T	1.385e^-4	0.497	INTRON Sesn
3R	15235137	3R_15235137_SNP [dm3] 3R_19409415_SNP [dm6]	A	T	1.389e^-4	0.497	INTRON CG11626
X	3814631	X_3814631_SNP [dm3] X_3920598_SNP [dm6]	C	T	1.390e^-4	0.497	INTRON CG42541
2R	12367858	2R_12367858_SNP [dm3] 2R_16480353_SNP [dm6]	G	A	1.390e^-4	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4786884	X_4786884_SNP [dm3] X_4892851_SNP [dm6]	A	C	1.393e^-4	0.497	INTRON CG42594
3R	15235592	3R_15235592_SNP [dm3] 3R_19409870_SNP [dm6]	C	A	1.394e^-4	0.497	SYNONYMOUS_CODING CG11626
2R	5862613	2R_5862613_SNP [dm3] 2R_9975108_SNP [dm6]	G	A	1.395e^-4	0.497	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	3376533	2R_3376533_SNP [dm3] 2R_7489028_SNP [dm6]	T	A	1.396e^-4	0.497	UPSTREAM wech INTRON wech	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12529496	2R_12529496_SNP [dm3] 2R_16641991_SNP [dm6]	G	A	1.403e^-4	0.498	INTRON gprs
X	5507374	X_5507374_SNP [dm3] X_5613341_SNP [dm6]	A	G	1.410e^-4	0.5	UTR_3_PRIME CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
2L	11124742	2L_11124742_SNP [dm3] 2L_11124742_SNP [dm6]	T	A	1.412e^-4	0.5	SPLICE_SITE_REGION Nup160 INTRON Nup160	TF binding site mE1_TFBS_sens
3R	26295176	3R_26295176_SNP [dm3] 3R_30469454_SNP [dm6]	T	C	1.427e^-4	0.502	INTRON PH4alphaEFB
2L	1688937	2L_1688937_SNP [dm3] 2L_1688937_SNP [dm6]	T	G	1.434e^-4	0.502	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15295258	2R_15295258_SNP [dm3] 2R_19407753_SNP [dm6]	T	A	1.435e^-4	0.502	INTRON hts
3R	19571100	3R_19571100_SNP [dm3] 3R_23745378_SNP [dm6]	T	A	1.436e^-4	0.502	INTRON Hmgcr
X	10893274	X_10893274_SNP [dm3] X_10999241_SNP [dm6]	T	A	1.440e^-4	0.502	INTRON CG42339
3R	5534824	3R_5534824_SNP [dm3] 3R_9709102_SNP [dm6]	A	G	1.441e^-4	0.502	SYNONYMOUS_CODING trbd	TF binding site mE1_TFBS_chinmo
3R	13043421	3R_13043421_SNP [dm3] 3R_17217699_SNP [dm6]	A	G	1.442e^-4	0.502	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
2R	8528850	2R_8528850_SNP [dm3] 2R_12641345_SNP [dm6]	C	T	1.444e^-4	0.502	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	1.447e^-4	0.502	INTRON mAChR-B
3L	4632288	3L_4632288_SNP [dm3] 3L_4632288_SNP [dm6]	C	T	1.447e^-4	0.502	INTRON axo
3R	15528234	3R_15528234_SNP [dm3] 3R_19702512_SNP [dm6]	G	A	1.451e^-4	0.502	INTERGENIC
2R	10794076	2R_10794076_SNP [dm3] 2R_14906571_SNP [dm6]	A	G	1.458e^-4	0.502	UPSTREAM CG10249 INTRON CG10249
3R	26167373	3R_26167373_SNP [dm3] 3R_30341651_SNP [dm6]	C	T	1.460e^-4	0.502	INTRON hdc
3L	15320826	3L_15320826_SNP [dm3] 3L_15327726_SNP [dm6]	C	A	1.462e^-4	0.502	INTERGENIC
2R	6701883	2R_6701883_SNP [dm3] 2R_10814378_SNP [dm6]	A	G	1.465e^-4	0.502	SYNONYMOUS_CODING CG7222	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13597635	3R_13597635_SNP [dm3] 3R_17771913_SNP [dm6]	C	T	1.465e^-4	0.502	SYNONYMOUS_CODING CG43102
2L	17270613	2L_17270613_SNP [dm3] 2L_17270613_SNP [dm6]	T	A	1.466e^-4	0.502	INTERGENIC
3L	3864185	3L_3864185_SNP [dm3] 3L_3864185_SNP [dm6]	A	C	1.473e^-4	0.502	EXON CR45379
3R	14076952	3R_14076952_SNP [dm3] 3R_18251230_SNP [dm6]	G	A	1.474e^-4	0.502	SYNONYMOUS_CODING CG18598 DOWNSTREAM 14-3-3epsilon & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5252715	2L_5252715_SNP [dm3] 2L_5252715_SNP [dm6]	G	T	1.476e^-4	0.502	INTRON tkv
2R	15734984	2R_15734984_SNP [dm3] 2R_19847479_SNP [dm6]	G	A	1.477e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14775670	2R_14775670_SNP [dm3] 2R_18888165_SNP [dm6]	A	G	1.478e^-4	0.502	INTRON sano
X	20474920	X_20474920_SNP [dm3] X_20603893_SNP [dm6]	T	C	1.480e^-4	0.502	INTRON RunxA
2L	8179660	2L_8179660_SNP [dm3] 2L_8179660_SNP [dm6]	T	C	1.485e^-4	0.502	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad
2R	9268941	2R_9268941_SNP [dm3] 2R_13381436_SNP [dm6]	A	C	1.487e^-4	0.502	INTERGENIC
X	731375	X_731375_SNP [dm3] X_837342_SNP [dm6]	G	C	1.495e^-4	0.504	UPSTREAM CG43867 INTRON CG43867
3R	17960495	3R_17960495_SNP [dm3] 3R_22134773_SNP [dm6]	C	T	1.508e^-4	0.507	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18443033	3R_18443033_SNP [dm3] 3R_22617311_SNP [dm6]	C	T	1.509e^-4	0.507	SYNONYMOUS_CODING CG31161 DOWNSTREAM EF-G2	TF binding site mE1_TFBS_sens
3L	1745753	3L_1745753_DEL [dm3] 3L_1745753_DEL [dm6]	TGACTAAGG	A	1.517e^-4	0.507	DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10206125	2R_10206125_SNP [dm3] 2R_14318620_SNP [dm6]	A	T	1.517e^-4	0.507	INTRON Shroom
3R	14194814	3R_14194814_DEL [dm3] 3R_18369092_DEL [dm6]	AGTTG	A	1.518e^-4	0.507	UTR_3_PRIME gl INTRON gl
3R	11681563	3R_11681563_SNP [dm3] 3R_15855841_SNP [dm6]	T	C	1.519e^-4	0.507	NON_SYNONYMOUS_CODING Hmt-1	TF binding site mE1_TFBS_sens
2R	16273851	2R_16273851_SNP [dm3] 2R_20386346_SNP [dm6]	G	T	1.521e^-4	0.507	INTERGENIC
X	7727776	X_7727776_SNP [dm3] X_7833743_SNP [dm6]	T	A	1.532e^-4	0.508	INTRON CG1402
3R	15559138	3R_15559138_SNP [dm3] 3R_19733416_SNP [dm6]	C	G	1.537e^-4	0.508	INTRON GluClalpha
X	2388075	X_2388075_SNP [dm3] X_2494042_SNP [dm6]	T	C	1.541e^-4	0.508	INTRON trol
2L	17608579	2L_17608579_SNP [dm3] 2L_17608579_SNP [dm6]	G	A	1.547e^-4	0.508	INTERGENIC
2R	6700621	2R_6700621_SNP [dm3] 2R_10813116_SNP [dm6]	C	A	1.550e^-4	0.508	UTR_5_PRIME CG12341 UPSTREAM CG7222 DOWNSTREAM mms4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	21713687	3R_21713687_SNP [dm3] 3R_25887965_SNP [dm6]	T	C	1.561e^-4	0.508	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
X	20945975	X_20945975_SNP [dm3] X_21074948_SNP [dm6]	G	A	1.562e^-4	0.508	INTRON bves
2R	19655216	2R_19655216_SNP [dm3] 2R_23767693_SNP [dm6]	A	G	1.564e^-4	0.508	INTRON CG9850
2R	5854416	2R_5854416_SNP [dm3] 2R_9966911_SNP [dm6]	C	T	1.564e^-4	0.508	UPSTREAM CG12133 INTERGENIC
2R	12264817	2R_12264817_SNP [dm3] 2R_16377312_SNP [dm6]	T	G	1.566e^-4	0.508	INTERGENIC
X	18386273	X_18386273_SNP [dm3] X_18492240_SNP [dm6]	G	T	1.569e^-4	0.508	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
2L	16491066	2L_16491066_SNP [dm3] 2L_16491066_SNP [dm6]	A	G	1.572e^-4	0.508	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_Ubx
X	7576831	X_7576831_SNP [dm3] X_7682798_SNP [dm6]	T	C	1.585e^-4	0.508	UTR_3_PRIME CHES-1-like DOWNSTREAM CHES-1-like
X	18878070	X_18878070_SNP [dm3] X_18984037_SNP [dm6]	A	G	1.585e^-4	0.508	INTRON CG43759
X	20475044	X_20475044_SNP [dm3] X_20604017_SNP [dm6]	A	G	1.586e^-4	0.508	INTRON RunxA	TF binding site mE1_TFBS_chinmo
3L	2316217	3L_2316217_SNP [dm3] 3L_2316217_SNP [dm6]	A	C	1.587e^-4	0.508	DOWNSTREAM CR45427 INTERGENIC
3R	4460495	3R_4460495_SNP [dm3] 3R_8634773_SNP [dm6]	C	T	1.587e^-4	0.508	SYNONYMOUS_CODING Or85e
2L	11676509	2L_11676509_SNP [dm3] 2L_11676509_SNP [dm6]	C	T	1.589e^-4	0.508	INTERGENIC
2L	9152189	2L_9152189_SNP [dm3] 2L_9152189_SNP [dm6]	T	C	1.592e^-4	0.508	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3L	15835892	3L_15835892_SNP [dm3] 3L_15842792_SNP [dm6]	T	A	1.596e^-4	0.508	DOWNSTREAM mir-263b INTRON CG32150
2R	8768189	2R_8768189_SNP [dm3] 2R_12880684_SNP [dm6]	C	G	1.605e^-4	0.508	UPSTREAM Nmda1 DOWNSTREAM CR45141 INTRON Aats-asp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	11497245	2L_11497245_SNP [dm3] 2L_11497245_SNP [dm6]	G	A	1.608e^-4	0.508	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
2R	9268341	2R_9268341_SNP [dm3] 2R_13380836_SNP [dm6]	A	G	1.611e^-4	0.508	INTERGENIC
3L	2361313	3L_2361313_SNP [dm3] 3L_2361313_SNP [dm6]	C	T	1.612e^-4	0.508	SYNONYMOUS_CODING CG13801	TF binding site mE1_TFBS_sens
3L	16283624	3L_16283624_SNP [dm3] 3L_16290524_SNP [dm6]	C	T	1.614e^-4	0.508	NON_SYNONYMOUS_CODING CG13045
3R	12684657	3R_12684657_SNP [dm3] 3R_16858935_SNP [dm6]	A	T	1.616e^-4	0.508	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18725529	3R_18725529_SNP [dm3] 3R_22899807_SNP [dm6]	T	G	1.617e^-4	0.508	INTRON klg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2828529	3L_2828529_SNP [dm3] 3L_2828529_SNP [dm6]	C	T	1.621e^-4	0.508	INTRON CG43444
3L	10673250	3L_10673250_SNP [dm3] 3L_10680150_SNP [dm6]	T	G	1.627e^-4	0.508	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14220054	3L_14220054_SNP [dm3] 3L_14226954_SNP [dm6]	G	T	1.627e^-4	0.508	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	15835970	3L_15835970_SNP [dm3] 3L_15842870_SNP [dm6]	A	G	1.628e^-4	0.508	DOWNSTREAM mir-263b INTRON CG32150
2L	16488873	2L_16488873_SNP [dm3] 2L_16488873_SNP [dm6]	T	C	1.631e^-4	0.508	NON_SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	16257017	3L_16257017_SNP [dm3] 3L_16263917_SNP [dm6]	A	C	1.637e^-4	0.508	NON_SYNONYMOUS_CODING CG13070 DOWNSTREAM CG13071 & 1 other
2R	6090408	2R_6090408_SNP [dm3] 2R_10202903_SNP [dm6]	T	G	1.638e^-4	0.508	INTERGENIC
2R	6090414	2R_6090414_SNP [dm3] 2R_10202909_SNP [dm6]	T	C	1.638e^-4	0.508	INTERGENIC
3L	16255806	3L_16255806_SNP [dm3] 3L_16262706_SNP [dm6]	T	C	1.640e^-4	0.508	UPSTREAM CG13071 & 1 other INTERGENIC
3R	24034528	3R_24034528_SNP [dm3] 3R_28208806_SNP [dm6]	G	C	1.644e^-4	0.508	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	4472271	2L_4472271_SNP [dm3] 2L_4472271_SNP [dm6]	C	T	1.644e^-4	0.508	INTRON ine
3R	3937660	3R_3937660_SNP [dm3] 3R_8111938_SNP [dm6]	C	G	1.648e^-4	0.508	DOWNSTREAM CR44331 INTRON puc	TF binding site BDTNP1_TFBS_dl
X	17564711	X_17564711_DEL [dm3] X_17670678_DEL [dm6]	CATGC	C	1.649e^-4	0.508	INTRON CG12990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6680289	X_6680289_SNP [dm3] X_6786256_SNP [dm6]	C	T	1.650e^-4	0.508	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
2R	18670585	2R_18670585_SNP [dm3] 2R_22783080_SNP [dm6]	G	T	1.653e^-4	0.508	INTRON CG42260
2R	14918165	2R_14918165_SNP [dm3] 2R_19030660_SNP [dm6]	C	A	1.655e^-4	0.508	DOWNSTREAM CG43351 INTRON 5-HT1B
3R	26118297	3R_26118297_SNP [dm3] 3R_30292575_SNP [dm6]	A	T	1.656e^-4	0.508	INTRON hdc
3R	22224449	3R_22224449_SNP [dm3] 3R_26398727_SNP [dm6]	A	G	1.657e^-4	0.508	INTERGENIC
3L	12641914	3L_12641914_SNP [dm3] 3L_12648814_SNP [dm6]	T	A	1.657e^-4	0.508	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3894163	2L_3894163_SNP [dm3] 2L_3894163_SNP [dm6]	C	G	1.670e^-4	0.508	INTRON capu
2L	8773853	2L_8773853_SNP [dm3] 2L_8773853_SNP [dm6]	T	A	1.672e^-4	0.508	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8448071	2R_8448071_SNP [dm3] 2R_12560566_SNP [dm6]	G	A	1.677e^-4	0.508	SYNONYMOUS_CODING fra
3L	15835659	3L_15835659_SNP [dm3] 3L_15842559_SNP [dm6]	A	G	1.678e^-4	0.508	DOWNSTREAM mir-263b INTRON CG32150
3R	25124629	3R_25124629_SNP [dm3] 3R_29298907_SNP [dm6]	C	A	1.680e^-4	0.508	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14797757	2L_14797757_SNP [dm3] 2L_14797757_SNP [dm6]	G	C	1.680e^-4	0.508	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16276508	3R_16276508_SNP [dm3] 3R_20450786_SNP [dm6]	A	T	1.680e^-4	0.508	INTRON Gfrl
3L	16253766	3L_16253766_SNP [dm3] 3L_16260666_SNP [dm6]	A	G	1.682e^-4	0.508	UPSTREAM CG13053 DOWNSTREAM CG34247 INTERGENIC
2R	9268334	2R_9268334_SNP [dm3] 2R_13380829_SNP [dm6]	T	A	1.682e^-4	0.508	INTERGENIC
2L	11753185	2L_11753185_SNP [dm3] 2L_11753185_SNP [dm6]	C	T	1.687e^-4	0.508	UTR_3_PRIME CG42470 DOWNSTREAM CG42471 & 1 other
2R	20062198	2R_20062198_SNP [dm3] 2R_24174675_SNP [dm6]	A	T	1.687e^-4	0.508	UPSTREAM Nop60B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14512184	3L_14512184_SNP [dm3] 3L_14519084_SNP [dm6]	C	T	1.689e^-4	0.508	DOWNSTREAM CG9592 & 1 other INTRON bbg
2L	6988351	2L_6988351_SNP [dm3] 2L_6988351_SNP [dm6]	G	A	1.690e^-4	0.508	INTRON uif
2L	18385627	2L_18385627_SNP [dm3] 2L_18385627_SNP [dm6]	G	A	1.695e^-4	0.508	INTRON Fas3
2L	6361903	2L_6361903_SNP [dm3] 2L_6361903_SNP [dm6]	T	C	1.696e^-4	0.508	DOWNSTREAM CR44778 INTERGENIC
3R	12683283	3R_12683283_SNP [dm3] 3R_16857561_SNP [dm6]	T	C	1.701e^-4	0.508	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16276666	3R_16276666_SNP [dm3] 3R_20450944_SNP [dm6]	T	G	1.702e^-4	0.508	INTRON Gfrl
2L	6780755	2L_6780755_SNP [dm3] 2L_6780755_SNP [dm6]	C	G	1.703e^-4	0.508	INTRON nrv1
3L	9865346	3L_9865346_SNP [dm3] 3L_9872246_SNP [dm6]	C	A	1.704e^-4	0.508	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	8047334	X_8047334_SNP [dm3] X_8153301_SNP [dm6]	T	C	1.705e^-4	0.508	SYNONYMOUS_CODING CG18262	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4730376	2L_4730376_SNP [dm3] 2L_4730376_SNP [dm6]	G	C	1.706e^-4	0.508	INTERGENIC
3R	5785713	3R_5785713_SNP [dm3] 3R_9959991_SNP [dm6]	A	T	1.714e^-4	0.509	INTRON Glut4EF
3L	11633431	3L_11633431_SNP [dm3] 3L_11640331_SNP [dm6]	C	T	1.716e^-4	0.509	INTRON CG32091
3L	14536639	3L_14536639_SNP [dm3] 3L_14543539_SNP [dm6]	G	A	1.731e^-4	0.511	INTRON CG9238
2R	20386734	2R_20386734_SNP [dm3] 2R_24499211_SNP [dm6]	G	T	1.733e^-4	0.511	DOWNSTREAM Ssl & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16279633	3R_16279633_DEL [dm3] 3R_20453911_DEL [dm6]	TGT	T	1.735e^-4	0.511	INTRON Gfrl
2R	3157068	2R_3157068_SNP [dm3] 2R_7269563_SNP [dm6]	C	T	1.735e^-4	0.511	INTERGENIC
2R	18498093	2R_18498093_SNP [dm3] 2R_22610588_SNP [dm6]	A	G	1.737e^-4	0.511	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23180865	3R_23180865_SNP [dm3] 3R_27355143_SNP [dm6]	A	G	1.737e^-4	0.511	INTRON CG42534
X	4786880	X_4786880_INS [dm3] X_4892847_INS [dm6]	A	AA	1.746e^-4	0.511	INTRON CG42594
3L	4350948	3L_4350948_SNP [dm3] 3L_4350948_SNP [dm6]	G	T	1.750e^-4	0.511	INTRON Cip4
X	9687785	X_9687785_SNP [dm3] X_9793752_SNP [dm6]	T	C	1.750e^-4	0.511	UPSTREAM CG32698 INTRON CG32698
3R	22902469	3R_22902469_SNP [dm3] 3R_27076747_SNP [dm6]	C	A	1.755e^-4	0.511	INTRON CG14257
2R	15297550	2R_15297550_SNP [dm3] 2R_19410045_SNP [dm6]	G	A	1.757e^-4	0.511	NON_SYNONYMOUS_CODING hts
2L	16867855	2L_16867855_SNP [dm3] 2L_16867855_SNP [dm6]	A	C	1.758e^-4	0.511	INTERGENIC
3R	13043951	3R_13043951_SNP [dm3] 3R_17218229_SNP [dm6]	T	C	1.765e^-4	0.511	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
3L	14809888	3L_14809888_SNP [dm3] 3L_14816788_SNP [dm6]	T	A	1.765e^-4	0.511	INTRON CG17839
2L	11496299	2L_11496299_SNP [dm3] 2L_11496299_SNP [dm6]	C	T	1.769e^-4	0.511	DOWNSTREAM CG6488 INTERGENIC
3R	21703465	3R_21703465_SNP [dm3] 3R_25877743_SNP [dm6]	T	C	1.772e^-4	0.511	INTRON Tsp96F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11433952	2L_11433952_DEL [dm3] 2L_11433952_DEL [dm6]	GAAATAAG	G	1.772e^-4	0.511	DOWNSTREAM salm INTERGENIC
2L	1359956	2L_1359956_DEL [dm3] 2L_1359956_DEL [dm6]	CTC	C	1.772e^-4	0.511	UTR_3_PRIME NLaz UPSTREAM CG31659 DOWNSTREAM NLaz
2R	10496023	2R_10496023_SNP [dm3] 2R_14608518_SNP [dm6]	T	C	1.772e^-4	0.511	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10487734	2R_10487734_SNP [dm3] 2R_14600229_SNP [dm6]	C	A	1.775e^-4	0.511	SYNONYMOUS_CODING RpI1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13043954	3R_13043954_SNP [dm3] 3R_17218232_SNP [dm6]	A	T	1.786e^-4	0.513	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
X	19203271	X_19203271_SNP [dm3] X_19309238_SNP [dm6]	T	G	1.789e^-4	0.513	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3477408	2L_3477408_SNP [dm3] 2L_3477408_SNP [dm6]	G	A	1.790e^-4	0.513	EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13999527	2L_13999527_SNP [dm3] 2L_13999527_SNP [dm6]	G	A	1.802e^-4	0.515	INTRON rk
3L	11336617	3L_11336617_SNP [dm3] 3L_11343517_SNP [dm6]	T	C	1.812e^-4	0.517	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	14597983	2R_14597983_SNP [dm3] 2R_18710478_SNP [dm6]	T	C	1.822e^-4	0.519	SYNONYMOUS_CODING CG15087 UPSTREAM pncr016:2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10510891	2R_10510891_DEL [dm3] 2R_14623386_DEL [dm6]	TATT	T	1.823e^-4	0.519	UPSTREAM snoRNA:Me28S-G2703a & 3 others DOWNSTREAM snoRNA:Me28S-C3227b & 4 others INTRON Uhg5	TF binding site mE1_TFBS_kn
2R	11766974	2R_11766974_SNP [dm3] 2R_15879469_SNP [dm6]	A	G	1.829e^-4	0.52	SYNONYMOUS_CODING sli
X	3421142	X_3421142_SNP [dm3] X_3527109_SNP [dm6]	T	A	1.835e^-4	0.521	INTRON CG32791
2R	15955929	2R_15955929_SNP [dm3] 2R_20068424_SNP [dm6]	C	T	1.839e^-4	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16284995	3L_16284995_SNP [dm3] 3L_16291895_SNP [dm6]	C	A	1.844e^-4	0.521	UPSTREAM CG13045 INTERGENIC
2L	15941122	2L_15941122_SNP [dm3] 2L_15941122_SNP [dm6]	G	T	1.845e^-4	0.521	UPSTREAM CG12448 INTRON beat-Ib
2R	17118994	2R_17118994_SNP [dm3] 2R_21231489_SNP [dm6]	T	C	1.849e^-4	0.521	INTRON ASPP
2L	27181	2L_27181_SNP [dm3] 2L_27181_SNP [dm6]	A	G	1.853e^-4	0.521	SYNONYMOUS_CODING Cda5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	5252827	2L_5252827_SNP [dm3] 2L_5252827_SNP [dm6]	A	G	1.853e^-4	0.521	INTRON tkv
2R	16273918	2R_16273918_SNP [dm3] 2R_20386413_SNP [dm6]	A	G	1.874e^-4	0.525	INTERGENIC
3L	1278762	3L_1278762_SNP [dm3] 3L_1278762_SNP [dm6]	G	A	1.875e^-4	0.525	INTRON CG32333
3L	10522164	3L_10522164_SNP [dm3] 3L_10529064_SNP [dm6]	T	G	1.877e^-4	0.525	INTRON A2bp1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	8696168	3L_8696168_SNP [dm3] 3L_8703068_SNP [dm6]	C	A	1.877e^-4	0.525	INTERGENIC
2L	11908459	2L_11908459_SNP [dm3] 2L_11908459_SNP [dm6]	A	G	1.884e^-4	0.525	INTRON Pde1c
X	16511429	X_16511429_SNP [dm3] X_16617396_SNP [dm6]	T	G	1.885e^-4	0.525	INTRON CG9782
3L	5120858	3L_5120858_SNP [dm3] 3L_5127758_SNP [dm6]	C	G	1.888e^-4	0.525	INTERGENIC
3L	21097774	3L_21097774_SNP [dm3] 3L_21104674_SNP [dm6]	A	G	1.896e^-4	0.526	INTRON ko	regulatory region REDfly_CRMs
3L	2113872	3L_2113872_SNP [dm3] 3L_2113872_SNP [dm6]	T	C	1.899e^-4	0.526	INTRON sls
3R	12683351	3R_12683351_SNP [dm3] 3R_16857629_SNP [dm6]	A	G	1.900e^-4	0.526	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21077074	3L_21077074_SNP [dm3] 3L_21083974_SNP [dm6]	T	C	1.903e^-4	0.526	INTRON ko
X	14321399	X_14321399_SNP [dm3] X_14427366_SNP [dm6]	A	G	1.906e^-4	0.526	INTRON dpr8
X	9135276	X_9135276_SNP [dm3] X_9241243_SNP [dm6]	G	T	1.915e^-4	0.526	SYNONYMOUS_CODING mxc	TF binding site mE1_TFBS_sens
X	14321398	X_14321398_SNP [dm3] X_14427365_SNP [dm6]	A	G	1.918e^-4	0.526	INTRON dpr8
3R	19670298	3R_19670298_SNP [dm3] 3R_23844576_SNP [dm6]	A	G	1.919e^-4	0.526	INTRON CG34355	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
X	19203232	X_19203232_SNP [dm3] X_19309199_SNP [dm6]	A	T	1.920e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	1.920e^-4	0.526	UTR_3_PRIME Cpr50Ca
3L	5390691	3L_5390691_SNP [dm3] 3L_5397591_SNP [dm6]	G	C	1.920e^-4	0.526	INTERGENIC
3L	2107963	3L_2107963_SNP [dm3] 3L_2107963_SNP [dm6]	C	G	1.935e^-4	0.527	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4100281	2L_4100281_SNP [dm3] 2L_4100281_SNP [dm6]	T	G	1.936e^-4	0.527	INTRON ed
2L	1362807	2L_1362807_SNP [dm3] 2L_1362807_SNP [dm6]	A	G	1.937e^-4	0.527	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
X	11273412	X_11273412_SNP [dm3] X_11379379_SNP [dm6]	T	C	1.952e^-4	0.527	INTRON dlg1
3R	4057977	3R_4057977_SNP [dm3] 3R_8232255_SNP [dm6]	G	A	1.958e^-4	0.527	UPSTREAM CR45551 DOWNSTREAM CR45549 INTERGENIC
2R	5826403	2R_5826403_SNP [dm3] 2R_9938898_SNP [dm6]	T	A	1.963e^-4	0.527	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	4611820	3L_4611820_SNP [dm3] 3L_4611820_SNP [dm6]	C	A	1.965e^-4	0.527	INTRON Src64B
2L	4813938	2L_4813938_SNP [dm3] 2L_4813938_SNP [dm6]	A	G	1.966e^-4	0.527	INTRON CG15629
3R	11230176	3R_11230176_SNP [dm3] 3R_15404454_SNP [dm6]	A	C	1.967e^-4	0.527	INTRON CG6125
2R	11170570	2R_11170570_SNP [dm3] 2R_15283065_SNP [dm6]	T	C	1.969e^-4	0.527	INTRON Trpm
3R	26167346	3R_26167346_SNP [dm3] 3R_30341624_SNP [dm6]	C	G	1.969e^-4	0.527	INTRON hdc
X	18878080	X_18878080_SNP [dm3] X_18984047_SNP [dm6]	C	T	1.969e^-4	0.527	INTRON CG43759
3L	8044386	3L_8044386_SNP [dm3] 3L_8051286_SNP [dm6]	T	A	1.970e^-4	0.527	UTR_3_PRIME nmo DOWNSTREAM nmo
X	11050170	X_11050170_SNP [dm3] X_11156137_SNP [dm6]	C	G	1.972e^-4	0.527	DOWNSTREAM CG32668 INTRON Dlic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12035136	2R_12035136_SNP [dm3] 2R_16147631_SNP [dm6]	T	C	1.974e^-4	0.527	NON_SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2R	18505361	2R_18505361_SNP [dm3] 2R_22617856_SNP [dm6]	G	A	1.977e^-4	0.527	INTRON CG33143	TF binding site mE1_TFBS_cad
2R	14596861	2R_14596861_SNP [dm3] 2R_18709356_SNP [dm6]	G	A	1.983e^-4	0.527	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
X	10194654	X_10194654_SNP [dm3] X_10300621_SNP [dm6]	C	G	1.986e^-4	0.527	INTRON alpha-Man-I
X	10194657	X_10194657_SNP [dm3] X_10300624_SNP [dm6]	A	G	1.986e^-4	0.527	INTRON alpha-Man-I
2R	5849618	2R_5849618_SNP [dm3] 2R_9962113_SNP [dm6]	A	T	1.987e^-4	0.527	INTRON Pal1	TF binding site mE1_TFBS_cad
3L	6628838	3L_6628838_SNP [dm3] 3L_6635738_SNP [dm6]	T	C	1.992e^-4	0.527	DOWNSTREAM GluRIA INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19203250	X_19203250_SNP [dm3] X_19309217_SNP [dm6]	T	G	1.992e^-4	0.527	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15865985	3R_15865985_SNP [dm3] 3R_20040263_SNP [dm6]	A	T	1.994e^-4	0.527	INTRON CG17193
2R	19403697	2R_19403697_SNP [dm3] 2R_23516174_SNP [dm6]	C	T	1.997e^-4	0.527	INTERGENIC
2R	9898784	2R_9898784_SNP [dm3] 2R_14011279_SNP [dm6]	C	T	1.998e^-4	0.527	INTRON mam
2L	943029	2L_943029_SNP [dm3] 2L_943029_SNP [dm6]	G	A	1.999e^-4	0.527	INTRON CG4341
X	19203251	X_19203251_SNP [dm3] X_19309218_SNP [dm6]	A	G	2.005e^-4	0.528	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2565118	3L_2565118_SNP [dm3] 3L_2565118_SNP [dm6]	C	A	2.009e^-4	0.528	INTRON msn
2R	11876362	2R_11876362_DEL [dm3] 2R_15988857_DEL [dm6]	CC	C	2.013e^-4	0.529	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
2L	17816223	2L_17816223_SNP [dm3] 2L_17816223_SNP [dm6]	C	A	2.024e^-4	0.53	INTRON CadN2
2R	10196857	2R_10196857_SNP [dm3] 2R_14309352_SNP [dm6]	A	T	2.025e^-4	0.53	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	5826402	2R_5826402_SNP [dm3] 2R_9938897_SNP [dm6]	T	A	2.030e^-4	0.53	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	8836325	2L_8836325_SNP [dm3] 2L_8836325_SNP [dm6]	C	A	2.034e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	16734726	3L_16734726_SNP [dm3] 3L_16741626_SNP [dm6]	T	A	2.035e^-4	0.53	INTERGENIC
2L	9436035	2L_9436035_SNP [dm3] 2L_9436035_SNP [dm6]	C	A	2.036e^-4	0.53	NON_SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like DOWNSTREAM scat
3L	1897110	3L_1897110_SNP [dm3] 3L_1897110_SNP [dm6]	G	A	2.048e^-4	0.53	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	6048596	2R_6048596_SNP [dm3] 2R_10161091_SNP [dm6]	A	C	2.049e^-4	0.53	INTRON KCNQ	TF binding site mE1_TFBS_HSA
3R	10162728	3R_10162728_DEL [dm3] 3R_14337006_DEL [dm6]	TTT	T	2.054e^-4	0.53	INTRON NK7.1	TF binding site mE1_TFBS_kn
2R	6714866	2R_6714866_SNP [dm3] 2R_10827361_SNP [dm6]	C	G	2.058e^-4	0.53	SYNONYMOUS_CODING CG12325 DOWNSTREAM CG12344
X	4786978	X_4786978_SNP [dm3] X_4892945_SNP [dm6]	T	A	2.059e^-4	0.53	INTRON CG42594
2R	6466965	2R_6466965_SNP [dm3] 2R_10579460_SNP [dm6]	A	T	2.065e^-4	0.53	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5050364	2L_5050364_SNP [dm3] 2L_5050364_SNP [dm6]	A	T	2.068e^-4	0.53	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
2L	13707331	2L_13707331_INS [dm3] 2L_13707331_INS [dm6]	A	ACAACC	2.069e^-4	0.53	UPSTREAM CG7311 INTRON CG31814
3R	10050796	3R_10050796_SNP [dm3] 3R_14225074_SNP [dm6]	C	T	2.070e^-4	0.53	UPSTREAM Sp212 DOWNSTREAM CG9631 INTERGENIC	TF binding site mE1_TFBS_cad
X	6640915	X_6640915_SNP [dm3] X_6746882_SNP [dm6]	G	A	2.073e^-4	0.53	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17160338	X_17160338_SNP [dm3] X_17266305_SNP [dm6]	G	T	2.076e^-4	0.53	INTRON f
2L	8358952	2L_8358952_SNP [dm3] 2L_8358952_SNP [dm6]	C	T	2.079e^-4	0.53	NON_SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16276520	3R_16276520_SNP [dm3] 3R_20450798_SNP [dm6]	A	G	2.079e^-4	0.53	INTRON Gfrl
2R	10482304	2R_10482304_SNP [dm3] 2R_14594799_SNP [dm6]	T	A	2.081e^-4	0.53	NON_SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2R	10499046	2R_10499046_DEL [dm3] 2R_14611541_DEL [dm6]	AA	A	2.089e^-4	0.53	INTRON Su_var_2-HP2
2L	11744766	2L_11744766_SNP [dm3] 2L_11744766_SNP [dm6]	A	G	2.092e^-4	0.53	UPSTREAM CR44144 DOWNSTREAM Vha100-5 INTERGENIC
2L	9331498	2L_9331498_DEL [dm3] 2L_9331498_DEL [dm6]	AACAA	A	2.094e^-4	0.53	UTR_3_PRIME Cks30A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	14119409	2L_14119409_SNP [dm3] 2L_14119409_SNP [dm6]	G	A	2.096e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	5852195	2R_5852195_SNP [dm3] 2R_9964690_SNP [dm6]	G	A	2.102e^-4	0.53	SYNONYMOUS_CODING CG1418 DOWNSTREAM Pal1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	16491385	2L_16491385_SNP [dm3] 2L_16491385_SNP [dm6]	A	T	2.103e^-4	0.53	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	9694630	2L_9694630_SNP [dm3] 2L_9694630_SNP [dm6]	A	G	2.109e^-4	0.53	INTRON Pka-C1
3L	6307212	3L_6307212_SNP [dm3] 3L_6314112_SNP [dm6]	G	A	2.110e^-4	0.53	INTERGENIC
2R	10504877	2R_10504877_SNP [dm3] 2R_14617372_SNP [dm6]	C	A	2.112e^-4	0.53	INTRON Su_var_2-HP2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	16251321	3L_16251321_INS [dm3] 3L_16258221_INS [dm6]	C	CCAC	2.112e^-4	0.53	DOWNSTREAM CG13053 INTERGENIC
3L	16711385	3L_16711385_SNP [dm3] 3L_16718285_SNP [dm6]	C	T	2.113e^-4	0.53	NON_SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13025114	3R_13025114_SNP [dm3] 3R_17199392_SNP [dm6]	G	C	2.114e^-4	0.53	INTRON Mur89F
3L	6305997	3L_6305997_SNP [dm3] 3L_6312897_SNP [dm6]	G	C	2.114e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24034553	3R_24034553_DEL [dm3] 3R_28208831_DEL [dm6]	TCCGTTTGT	T	2.118e^-4	0.53	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	23806122	3R_23806122_SNP [dm3] 3R_27980400_SNP [dm6]	G	C	2.118e^-4	0.53	INTRON betaTub97EF
3L	2840033	3L_2840033_SNP [dm3] 3L_2840033_SNP [dm6]	G	T	2.124e^-4	0.53	INTRON CG43444
2L	9147726	2L_9147726_SNP [dm3] 2L_9147726_SNP [dm6]	C	T	2.129e^-4	0.53	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	21628613	3R_21628613_SNP [dm3] 3R_25802891_SNP [dm6]	T	C	2.130e^-4	0.53	INTERGENIC
3R	12682745	3R_12682745_SNP [dm3] 3R_16857023_SNP [dm6]	G	A	2.132e^-4	0.53	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16104484	2R_16104484_SNP [dm3] 2R_20216979_SNP [dm6]	G	A	2.132e^-4	0.53	INTERGENIC
2R	4633978	2R_4633978_SNP [dm3] 2R_8746473_SNP [dm6]	C	A	2.133e^-4	0.53	INTRON CG8740
3L	4944141	3L_4944141_SNP [dm3] 3L_4944141_SNP [dm6]	T	C	2.137e^-4	0.53	INTRON Con
X	3021686	X_3021686_SNP [dm3] X_3127653_SNP [dm6]	T	G	2.140e^-4	0.53	UPSTREAM kirre INTRON kirre
2L	7568302	2L_7568302_SNP [dm3] 2L_7568302_SNP [dm6]	C	T	2.144e^-4	0.53	INTRON RapGAP1
2L	9437321	2L_9437321_SNP [dm3] 2L_9437321_SNP [dm6]	C	T	2.154e^-4	0.53	UPSTREAM numb DOWNSTREAM CG3769 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	11080804	2L_11080804_SNP [dm3] 2L_11080804_SNP [dm6]	G	A	2.154e^-4	0.53	INTRON AstC
3L	6307200	3L_6307200_SNP [dm3] 3L_6314100_SNP [dm6]	G	T	2.155e^-4	0.53	INTERGENIC
2L	8773973	2L_8773973_SNP [dm3] 2L_8773973_SNP [dm6]	G	A	2.157e^-4	0.53	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	721249	3R_721249_SNP [dm3] 3R_4895527_SNP [dm6]	C	T	2.164e^-4	0.53	UPSTREAM CR45580 INTERGENIC
2R	9268346	2R_9268346_DEL [dm3] 2R_13380841_DEL [dm6]	TAT	T	2.166e^-4	0.53	INTERGENIC
2L	9433493	2L_9433493_SNP [dm3] 2L_9433493_SNP [dm6]	G	A	2.171e^-4	0.53	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9870331	3L_9870331_SNP [dm3] 3L_9877231_SNP [dm6]	T	C	2.178e^-4	0.53	DOWNSTREAM CR45406 INTERGENIC
3R	16283086	3R_16283086_SNP [dm3] 3R_20457364_SNP [dm6]	A	C	2.182e^-4	0.53	INTRON Gfrl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15235128	3R_15235128_SNP [dm3] 3R_19409406_SNP [dm6]	T	A	2.183e^-4	0.53	INTRON CG11626
2L	7583288	2L_7583288_SNP [dm3] 2L_7583288_SNP [dm6]	A	C	2.189e^-4	0.53	UTR_3_PRIME Spn28B DOWNSTREAM Spn28B
2L	11503822	2L_11503822_SNP [dm3] 2L_11503822_SNP [dm6]	G	A	2.193e^-4	0.53	INTRON spz4
3L	4736891	3L_4736891_SNP [dm3] 3L_4736891_SNP [dm6]	C	A	2.193e^-4	0.53	INTRON RhoGEF64C
X	11050285	X_11050285_SNP [dm3] X_11156252_SNP [dm6]	A	T	2.194e^-4	0.53	DOWNSTREAM CG32668 INTRON Dlic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12853101	3L_12853101_SNP [dm3] 3L_12860001_SNP [dm6]	T	A	2.197e^-4	0.53	NON_SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
3R	3868164	3R_3868164_SNP [dm3] 3R_8042442_SNP [dm6]	T	G	2.206e^-4	0.53	DOWNSTREAM CG43060 INTRON CG43060
3L	15622115	3L_15622115_SNP [dm3] 3L_15629015_SNP [dm6]	G	A	2.206e^-4	0.53	INTRON comm3
3L	8044395	3L_8044395_SNP [dm3] 3L_8051295_SNP [dm6]	A	T	2.207e^-4	0.53	UTR_3_PRIME nmo DOWNSTREAM nmo
3R	712768	3R_712768_SNP [dm3] 3R_4887046_SNP [dm6]	G	A	2.211e^-4	0.53	INTERGENIC
2R	6466180	2R_6466180_INS [dm3] 2R_10578675_INS [dm6]	G	GG	2.213e^-4	0.53	INTRON psq
X	14046492	X_14046492_SNP [dm3] X_14152459_SNP [dm6]	A	T	2.214e^-4	0.53	UPSTREAM CG12479 INTERGENIC
2R	5846591	2R_5846591_SNP [dm3] 2R_9959086_SNP [dm6]	A	T	2.215e^-4	0.53	UPSTREAM Pal1 & 1 other DOWNSTREAM CG15863 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13692496	3L_13692496_SNP [dm3] 3L_13699396_SNP [dm6]	A	G	2.215e^-4	0.53	INTRON bru-3
3R	4057942	3R_4057942_SNP [dm3] 3R_8232220_SNP [dm6]	A	T	2.216e^-4	0.53	UPSTREAM CR45551 INTERGENIC
X	11050336	X_11050336_SNP [dm3] X_11156303_SNP [dm6]	A	T	2.217e^-4	0.53	DOWNSTREAM CG32668 INTRON Dlic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6220294	2R_6220294_SNP [dm3] 2R_10332789_SNP [dm6]	T	A	2.218e^-4	0.53	INTRON CG42732
3R	5643118	3R_5643118_SNP [dm3] 3R_9817396_SNP [dm6]	G	A	2.223e^-4	0.53	UPSTREAM CG16904 DOWNSTREAM CG9459 INTERGENIC
3R	5643120	3R_5643120_SNP [dm3] 3R_9817398_SNP [dm6]	T	C	2.223e^-4	0.53	UPSTREAM CG16904 DOWNSTREAM CG9459 INTERGENIC
2R	15295302	2R_15295302_SNP [dm3] 2R_19407797_SNP [dm6]	T	G	2.231e^-4	0.532	INTRON hts
3R	25302604	3R_25302604_SNP [dm3] 3R_29476882_SNP [dm6]	G	A	2.236e^-4	0.532	INTRON Ptp99A
2L	10528483	2L_10528483_SNP [dm3] 2L_10528483_SNP [dm6]	T	A	2.239e^-4	0.532	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	24034493	3R_24034493_SNP [dm3] 3R_28208771_SNP [dm6]	C	T	2.245e^-4	0.533	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8359008	2L_8359008_SNP [dm3] 2L_8359008_SNP [dm6]	C	A	2.248e^-4	0.533	NON_SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8552248	X_8552248_SNP [dm3] X_8658215_SNP [dm6]	A	C	2.251e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9507749	3L_9507749_SNP [dm3] 3L_9514649_SNP [dm6]	A	T	2.268e^-4	0.533	SYNONYMOUS_CODING CG33700 UPSTREAM CR33701
3L	6022967	3L_6022967_SNP [dm3] 3L_6029867_SNP [dm6]	G	A	2.269e^-4	0.533	INTERGENIC
X	4532839	X_4532839_SNP [dm3] X_4638806_SNP [dm6]	C	A	2.272e^-4	0.533	UTR_3_PRIME pon DOWNSTREAM CG3081	TF binding site mE1_TFBS_cad
3R	14874443	3R_14874443_SNP [dm3] 3R_19048721_SNP [dm6]	T	C	2.272e^-4	0.533	NON_SYNONYMOUS_CODING cdi	TF binding site mE1_TFBS_chinmo
3R	23435744	3R_23435744_SNP [dm3] 3R_27610022_SNP [dm6]	T	C	2.276e^-4	0.533	INTRON Tusp
2L	8804024	2L_8804024_SNP [dm3] 2L_8804024_SNP [dm6]	G	T	2.279e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12669736	2L_12669736_SNP [dm3] 2L_12669736_SNP [dm6]	T	C	2.280e^-4	0.533	UPSTREAM CG15485 INTRON pdm2
3R	17678109	3R_17678109_SNP [dm3] 3R_21852387_SNP [dm6]	T	G	2.287e^-4	0.533	INTRON glec
3R	16442079	3R_16442079_SNP [dm3] 3R_20616357_SNP [dm6]	T	A	2.289e^-4	0.533	INTRON CG15923
2R	11957941	2R_11957941_SNP [dm3] 2R_16070436_SNP [dm6]	G	A	2.289e^-4	0.533	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3877621	2L_3877621_SNP [dm3] 2L_3877621_SNP [dm6]	T	C	2.294e^-4	0.533	INTRON capu
2L	11398766	2L_11398766_SNP [dm3] 2L_11398766_SNP [dm6]	T	C	2.295e^-4	0.533	INTERGENIC	regulatory region REDfly_CRMs
3R	16276475	3R_16276475_SNP [dm3] 3R_20450753_SNP [dm6]	G	T	2.303e^-4	0.533	INTRON Gfrl
2R	15297909	2R_15297909_SNP [dm3] 2R_19410404_SNP [dm6]	G	C	2.304e^-4	0.533	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
3L	17438773	3L_17438773_SNP [dm3] 3L_17445673_SNP [dm6]	C	T	2.304e^-4	0.533	UPSTREAM CG18265 INTRON CG18265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10486115	2R_10486115_SNP [dm3] 2R_14598610_SNP [dm6]	C	T	2.310e^-4	0.533	SYNONYMOUS_CODING RpI1
X	12377740	X_12377740_DEL [dm3] X_12483707_DEL [dm6]	AAG	T	2.318e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11753233	X_11753233_INS [dm3] X_11859200_INS [dm6]	A	ATTGAGGAACTTTACATGGA...	2.318e^-4	0.533	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	16735247	3L_16735247_SNP [dm3] 3L_16742147_SNP [dm6]	T	G	2.322e^-4	0.533	INTERGENIC
2L	6611998	2L_6611998_SNP [dm3] 2L_6611998_SNP [dm6]	A	G	2.325e^-4	0.533	INTRON CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	20060624	2R_20060624_SNP [dm3] 2R_24173101_SNP [dm6]	G	C	2.327e^-4	0.533	NON_SYNONYMOUS_CODING CG3328 DOWNSTREAM mRpS17	TF binding site mE1_TFBS_chinmo
3R	26347874	3R_26347874_SNP [dm3] 3R_30522152_SNP [dm6]	G	T	2.328e^-4	0.533	INTRON jdp
2R	17305072	2R_17305072_SNP [dm3] 2R_21417567_SNP [dm6]	G	C	2.331e^-4	0.533	UPSTREAM Sdc INTRON Sdc
2L	14098874	2L_14098874_SNP [dm3] 2L_14098874_SNP [dm6]	A	G	2.331e^-4	0.533	INTERGENIC
3R	16766761	3R_16766761_SNP [dm3] 3R_20941039_SNP [dm6]	A	T	2.335e^-4	0.533	INTRON CG31191
X	12544536	X_12544536_SNP [dm3] X_12650503_SNP [dm6]	A	T	2.337e^-4	0.533	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
3L	2156867	3L_2156867_SNP [dm3] 3L_2156867_SNP [dm6]	T	C	2.338e^-4	0.533	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
2L	6823318	2L_6823318_SNP [dm3] 2L_6823318_SNP [dm6]	T	A	2.339e^-4	0.533	INTRON sens-2
2L	12805933	2L_12805933_SNP [dm3] 2L_12805933_SNP [dm6]	G	C	2.341e^-4	0.533	INTERGENIC
2L	10095763	2L_10095763_SNP [dm3] 2L_10095763_SNP [dm6]	A	T	2.341e^-4	0.533	INTRON CG44153 & 1 other
3L	14646848	3L_14646848_SNP [dm3] 3L_14653748_SNP [dm6]	G	A	2.341e^-4	0.533	INTRON dlp
X	7150182	X_7150182_SNP [dm3] X_7256149_SNP [dm6]	T	G	2.343e^-4	0.533	INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	14786080	2L_14786080_SNP [dm3] 2L_14786080_SNP [dm6]	T	C	2.351e^-4	0.533	INTERGENIC
3L	16253402	3L_16253402_INS [dm3] 3L_16260302_INS [dm6]	A	AT	2.354e^-4	0.533	UPSTREAM CG13053 DOWNSTREAM CG34247 INTERGENIC
3L	16892106	3L_16892106_SNP [dm3] 3L_16899006_SNP [dm6]	C	A	2.357e^-4	0.533	UPSTREAM Lmpt INTRON Lmpt
2L	13544504	2L_13544504_INS [dm3] 2L_13544504_INS [dm6]	A	ATTTACCA	2.360e^-4	0.533	DOWNSTREAM CG16853 INTRON B4
2L	18358019	2L_18358019_SNP [dm3] 2L_18358019_SNP [dm6]	T	C	2.364e^-4	0.533	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	4635447	3L_4635447_DEL [dm3] 3L_4635447_DEL [dm6]	TTT	T	2.366e^-4	0.533	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14626501	2R_14626501_SNP [dm3] 2R_18738996_SNP [dm6]	A	G	2.367e^-4	0.533	UTR_3_PRIME CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
3L	21157012	3L_21157012_SNP [dm3] 3L_21163912_SNP [dm6]	A	G	2.369e^-4	0.533	INTRON Ac78C
3L	16272161	3L_16272161_SNP [dm3] 3L_16279061_SNP [dm6]	G	A	2.372e^-4	0.533	NON_SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
X	14320807	X_14320807_SNP [dm3] X_14426774_SNP [dm6]	T	G	2.373e^-4	0.533	INTRON dpr8
2L	8775590	2L_8775590_SNP [dm3] 2L_8775590_SNP [dm6]	A	G	2.376e^-4	0.533	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7568359	2L_7568359_SNP [dm3] 2L_7568359_SNP [dm6]	G	A	2.376e^-4	0.533	INTRON RapGAP1
X	11120398	X_11120398_SNP [dm3] X_11226365_SNP [dm6]	G	A	2.378e^-4	0.533	INTRON CG44422
2R	19183530	2R_19183530_SNP [dm3] 2R_23296007_SNP [dm6]	T	C	2.386e^-4	0.534	INTERGENIC
2R	16633694	2R_16633694_SNP [dm3] 2R_20746189_SNP [dm6]	C	A	2.391e^-4	0.534	INTRON dpr
2L	10080926	2L_10080926_SNP [dm3] 2L_10080926_SNP [dm6]	C	A	2.393e^-4	0.534	INTRON CG44153
2R	20079467	2R_20079467_SNP [dm3] 2R_24191944_SNP [dm6]	G	T	2.395e^-4	0.534	NON_SYNONYMOUS_CODING ocm	TF binding site mE1_TFBS_HSA
2R	6230294	2R_6230294_SNP [dm3] 2R_10342789_SNP [dm6]	G	A	2.398e^-4	0.534	INTRON CG42732
X	9950623	X_9950623_SNP [dm3] X_10056590_SNP [dm6]	A	C	2.403e^-4	0.534	UTR_3_PRIME CG15312 DOWNSTREAM CG15312
3R	13024646	3R_13024646_SNP [dm3] 3R_17198924_SNP [dm6]	A	G	2.405e^-4	0.534	INTRON Mur89F
2L	18423943	2L_18423943_SNP [dm3] 2L_18423943_SNP [dm6]	T	A	2.409e^-4	0.534	INTERGENIC
2R	8584028	2R_8584028_SNP [dm3] 2R_12696523_SNP [dm6]	G	A	2.412e^-4	0.534	INTERGENIC
2L	3314294	2L_3314294_SNP [dm3] 2L_3314294_SNP [dm6]	C	T	2.413e^-4	0.534	SYNONYMOUS_CODING CG3277
2R	13214224	2R_13214224_SNP [dm3] 2R_17326719_SNP [dm6]	C	T	2.413e^-4	0.534	INTRON mbl
2L	9926967	2L_9926967_SNP [dm3] 2L_9926967_SNP [dm6]	C	T	2.424e^-4	0.535	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18752534	3R_18752534_SNP [dm3] 3R_22926812_SNP [dm6]	T	A	2.424e^-4	0.535	INTRON klg
3R	15246250	3R_15246250_SNP [dm3] 3R_19420528_SNP [dm6]	T	G	2.429e^-4	0.535	INTRON CG31221
X	15791214	X_15791214_SNP [dm3] X_15897181_SNP [dm6]	A	G	2.437e^-4	0.536	SYNONYMOUS_CODING shi
2R	7232361	2R_7232361_SNP [dm3] 2R_11344856_SNP [dm6]	T	G	2.440e^-4	0.536	SYNONYMOUS_CODING alphaTry DOWNSTREAM epsilonTry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11494717	2L_11494717_SNP [dm3] 2L_11494717_SNP [dm6]	C	T	2.443e^-4	0.536	INTERGENIC
2L	15954196	2L_15954196_SNP [dm3] 2L_15954196_SNP [dm6]	C	T	2.450e^-4	0.536	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb
3L	18487755	3L_18487755_SNP [dm3] 3L_18494655_SNP [dm6]	G	A	2.450e^-4	0.536	INTRON AstC-R2
2L	18311673	2L_18311673_SNP [dm3] 2L_18311673_SNP [dm6]	T	C	2.453e^-4	0.536	DOWNSTREAM CR45721 INTERGENIC
2R	14598384	2R_14598384_SNP [dm3] 2R_18710879_SNP [dm6]	T	G	2.455e^-4	0.536	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1349004	2R_1349004_SNP [dm3] 2R_5461499_SNP [dm6]	A	G	2.462e^-4	0.536	INTERGENIC	transposable element FlyBase
X	7150165	X_7150165_SNP [dm3] X_7256132_SNP [dm6]	T	G	2.466e^-4	0.536	INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	16325276	3L_16325276_SNP [dm3] 3L_16332176_SNP [dm6]	C	T	2.466e^-4	0.536	SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11753167	2L_11753167_SNP [dm3] 2L_11753167_SNP [dm6]	G	T	2.467e^-4	0.536	UTR_3_PRIME CG42470 DOWNSTREAM CG42471 & 1 other
3R	21292549	3R_21292549_SNP [dm3] 3R_25466827_SNP [dm6]	G	T	2.470e^-4	0.536	INTRON Fur1
2L	11494226	2L_11494226_INS [dm3] 2L_11494226_INS [dm6]	T	TT	2.472e^-4	0.536	INTERGENIC
3L	16269761	3L_16269761_SNP [dm3] 3L_16276661_SNP [dm6]	A	C	2.476e^-4	0.536	UPSTREAM CG13065 INTERGENIC
3R	11304582	3R_11304582_SNP [dm3] 3R_15478860_SNP [dm6]	A	T	2.478e^-4	0.536	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9844470	2L_9844470_SNP [dm3] 2L_9844470_SNP [dm6]	G	T	2.481e^-4	0.536	INTRON nAChRalpha6
2L	9180473	2L_9180473_SNP [dm3] 2L_9180473_SNP [dm6]	A	C	2.483e^-4	0.536	INTRON tai
3L	1897147	3L_1897147_SNP [dm3] 3L_1897147_SNP [dm6]	G	T	2.485e^-4	0.536	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	9378723	2R_9378723_SNP [dm3] 2R_13491218_SNP [dm6]	G	A	2.490e^-4	0.537	INTRON bbc
2R	17137986	2R_17137986_SNP [dm3] 2R_21250481_SNP [dm6]	G	T	2.493e^-4	0.537	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	15937863	3L_15937863_SNP [dm3] 3L_15944763_SNP [dm6]	C	G	2.507e^-4	0.539	INTRON Pka-C3
3R	21713643	3R_21713643_SNP [dm3] 3R_25887921_SNP [dm6]	A	C	2.512e^-4	0.54	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
2R	10320108	2R_10320108_SNP [dm3] 2R_14432603_SNP [dm6]	T	C	2.520e^-4	0.54	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1690176	3L_1690176_SNP [dm3] 3L_1690176_SNP [dm6]	C	T	2.520e^-4	0.54	INTRON CG7991
2L	11692865	2L_11692865_SNP [dm3] 2L_11692865_SNP [dm6]	C	A	2.526e^-4	0.541	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15333011	3R_15333011_SNP [dm3] 3R_19507289_SNP [dm6]	C	T	2.535e^-4	0.541	INTRON Dys
X	12638416	X_12638416_SNP [dm3] X_12744383_SNP [dm6]	G	A	2.540e^-4	0.541	UTR_5_PRIME CG4004 UPSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22967122	3L_22967122_SNP [dm3] 3L_22974022_SNP [dm6]	C	A	2.541e^-4	0.541	INTERGENIC	transposable element FlyBase
2R	17304884	2R_17304884_SNP [dm3] 2R_21417379_SNP [dm6]	C	A	2.544e^-4	0.541	UPSTREAM Sdc INTRON Sdc
2L	6459230	2L_6459230_SNP [dm3] 2L_6459230_SNP [dm6]	G	T	2.545e^-4	0.541	UTR_3_PRIME CG16947 DOWNSTREAM CG16947 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25126708	3R_25126708_SNP [dm3] 3R_29300986_SNP [dm6]	G	T	2.546e^-4	0.541	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA
2R	11996556	2R_11996556_SNP [dm3] 2R_16109051_SNP [dm6]	C	T	2.552e^-4	0.541	SYNONYMOUS_CODING Ric	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3923976	3L_3923976_SNP [dm3] 3L_3923976_SNP [dm6]	G	A	2.553e^-4	0.541	INTRON Eip63F-1
2L	6010169	2L_6010169_SNP [dm3] 2L_6010169_SNP [dm6]	C	A	2.556e^-4	0.541	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
3L	2827334	3L_2827334_SNP [dm3] 3L_2827334_SNP [dm6]	G	C	2.562e^-4	0.541	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26995394	3R_26995394_SNP [dm3] 3R_31169672_SNP [dm6]	G	T	2.563e^-4	0.541	UPSTREAM stops INTRON Gycbeta100B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17565851	X_17565851_SNP [dm3] X_17671818_SNP [dm6]	G	A	2.566e^-4	0.541	SYNONYMOUS_CODING CG12990 DOWNSTREAM chas
3R	7665449	3R_7665449_SNP [dm3] 3R_11839727_SNP [dm6]	G	C	2.569e^-4	0.541	INTRON CG6959
3R	15529035	3R_15529035_SNP [dm3] 3R_19703313_SNP [dm6]	C	G	2.569e^-4	0.541	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12770001	2L_12770001_SNP [dm3] 2L_12770001_SNP [dm6]	C	T	2.573e^-4	0.541	INTERGENIC
3R	13596268	3R_13596268_SNP [dm3] 3R_17770546_SNP [dm6]	G	A	2.576e^-4	0.541	SYNONYMOUS_CODING CG43102
2L	7576039	2L_7576039_SNP [dm3] 2L_7576039_SNP [dm6]	T	A	2.578e^-4	0.541	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
3R	13597620	3R_13597620_SNP [dm3] 3R_17771898_SNP [dm6]	G	A	2.579e^-4	0.541	SYNONYMOUS_CODING CG43102
3R	16281463	3R_16281463_SNP [dm3] 3R_20455741_SNP [dm6]	C	T	2.581e^-4	0.541	INTRON Gfrl
3R	19660681	3R_19660681_SNP [dm3] 3R_23834959_SNP [dm6]	C	T	2.599e^-4	0.544	INTRON CG34355
3L	9367467	3L_9367467_SNP [dm3] 3L_9374367_SNP [dm6]	G	A	2.600e^-4	0.544	SYNONYMOUS_CODING Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12347330	2L_12347330_SNP [dm3] 2L_12347330_SNP [dm6]	T	C	2.616e^-4	0.546	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16276704	3R_16276704_SNP [dm3] 3R_20450982_SNP [dm6]	G	A	2.617e^-4	0.546	INTRON Gfrl
2L	4798244	2L_4798244_SNP [dm3] 2L_4798244_SNP [dm6]	C	A	2.622e^-4	0.546	INTRON Clect27
3R	15235197	3R_15235197_SNP [dm3] 3R_19409475_SNP [dm6]	G	A	2.625e^-4	0.546	SYNONYMOUS_CODING CG11626
2L	9413613	2L_9413613_SNP [dm3] 2L_9413613_SNP [dm6]	T	C	2.626e^-4	0.546	INTRON Shawl
2L	8267505	2L_8267505_SNP [dm3] 2L_8267505_SNP [dm6]	G	T	2.635e^-4	0.546	INTRON Btk29A
2R	4119791	2R_4119791_SNP [dm3] 2R_8232286_SNP [dm6]	G	A	2.635e^-4	0.546	UTR_5_PRIME dpn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18219301	2L_18219301_SNP [dm3] 2L_18219301_SNP [dm6]	A	T	2.641e^-4	0.546	INTRON CG42750
2R	9886677	2R_9886677_SNP [dm3] 2R_13999172_SNP [dm6]	G	C	2.641e^-4	0.546	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	7331749	2L_7331749_SNP [dm3] 2L_7331749_SNP [dm6]	G	A	2.645e^-4	0.546	INTERGENIC
X	12544176	X_12544176_DEL [dm3] X_12650143_DEL [dm6]	TCT	T	2.650e^-4	0.546	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8191899	2L_8191899_SNP [dm3] 2L_8191899_SNP [dm6]	G	A	2.655e^-4	0.546	SYNONYMOUS_CODING CG8475 UTR_3_PRIME CG8475	TF binding site mE1_TFBS_cad
2R	17273692	2R_17273692_SNP [dm3] 2R_21386187_SNP [dm6]	G	T	2.656e^-4	0.546	UTR_5_PRIME EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2443864	2L_2443864_SNP [dm3] 2L_2443864_SNP [dm6]	G	A	2.662e^-4	0.546	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	18505928	2R_18505928_SNP [dm3] 2R_22618423_SNP [dm6]	A	G	2.665e^-4	0.546	INTRON CG33143
2R	10510942	2R_10510942_SNP [dm3] 2R_14623437_SNP [dm6]	C	A	2.666e^-4	0.546	UPSTREAM snoRNA:Me28S-G2703a & 3 others DOWNSTREAM snoRNA:Me28S-U1848 & 3 others EXON Uhg5	TF binding site mE1_TFBS_kn
2L	6158189	2L_6158189_SNP [dm3] 2L_6158189_SNP [dm6]	A	T	2.668e^-4	0.546	INTERGENIC
3R	12682331	3R_12682331_SNP [dm3] 3R_16856609_SNP [dm6]	C	A	2.671e^-4	0.546	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2113536	3L_2113536_SNP [dm3] 3L_2113536_SNP [dm6]	A	G	2.677e^-4	0.546	INTRON sls
2R	15823728	2R_15823728_SNP [dm3] 2R_19936223_SNP [dm6]	A	C	2.678e^-4	0.546	INTERGENIC
2R	9433907	2R_9433907_SNP [dm3] 2R_13546402_SNP [dm6]	C	T	2.681e^-4	0.546	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	4492574	3L_4492574_SNP [dm3] 3L_4492574_SNP [dm6]	G	T	2.683e^-4	0.546	INTERGENIC
2R	5866383	2R_5866383_SNP [dm3] 2R_9978878_SNP [dm6]	C	T	2.684e^-4	0.546	UPSTREAM eve EXON CR43948	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	3262150	3R_3262150_SNP [dm3] 3R_7436428_SNP [dm6]	G	T	2.684e^-4	0.546	INTERGENIC
X	7150123	X_7150123_SNP [dm3] X_7256090_SNP [dm6]	G	A	2.685e^-4	0.546	INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	9233631	3L_9233631_SNP [dm3] 3L_9240531_SNP [dm6]	A	T	2.688e^-4	0.546	INTERGENIC
2L	1950486	2L_1950486_SNP [dm3] 2L_1950486_SNP [dm6]	T	C	2.690e^-4	0.546	UTR_3_PRIME erm
2L	8665141	2L_8665141_SNP [dm3] 2L_8665141_SNP [dm6]	A	T	2.694e^-4	0.546	INTRON Sema-1a
2L	11493483	2L_11493483_DEL [dm3] 2L_11493483_DEL [dm6]	TCT	T	2.709e^-4	0.546	INTERGENIC
2L	12086606	2L_12086606_SNP [dm3] 2L_12086606_SNP [dm6]	T	C	2.709e^-4	0.546	UPSTREAM CR44593 & 1 other DOWNSTREAM CR44592 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4736902	3L_4736902_SNP [dm3] 3L_4736902_SNP [dm6]	C	T	2.711e^-4	0.546	INTRON RhoGEF64C
3R	12346909	3R_12346909_SNP [dm3] 3R_16521187_SNP [dm6]	A	G	2.712e^-4	0.546	INTRON CG42342	TF binding site mE1_TFBS_cad
2L	14346814	2L_14346814_SNP [dm3] 2L_14346814_SNP [dm6]	A	T	2.715e^-4	0.546	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
3R	25597350	3R_25597350_SNP [dm3] 3R_29771628_SNP [dm6]	C	T	2.716e^-4	0.546	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14598138	2R_14598138_SNP [dm3] 2R_18710633_SNP [dm6]	A	T	2.717e^-4	0.546	UPSTREAM pncr016:2R INTRON CG15087	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19273487	3L_19273487_SNP [dm3] 3L_19280387_SNP [dm6]	C	T	2.718e^-4	0.546	SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2R	7032796	2R_7032796_SNP [dm3] 2R_11145291_SNP [dm6]	T	C	2.718e^-4	0.546	UPSTREAM CG13231 INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5909692	3L_5909692_SNP [dm3] 3L_5916592_SNP [dm6]	C	A	2.723e^-4	0.546	INTRON CG13288
2L	14346799	2L_14346799_SNP [dm3] 2L_14346799_SNP [dm6]	T	C	2.730e^-4	0.547	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2L	10575199	2L_10575199_DEL [dm3] 2L_10575199_DEL [dm6]	AA	A	2.737e^-4	0.547	DOWNSTREAM w-cup INTRON Trim9
3L	9502198	3L_9502198_SNP [dm3] 3L_9509098_SNP [dm6]	G	T	2.740e^-4	0.547	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24563399	3R_24563399_SNP [dm3] 3R_28737677_SNP [dm6]	T	A	2.741e^-4	0.547	INTRON AstA-R2
X	14316151	X_14316151_SNP [dm3] X_14422118_SNP [dm6]	T	A	2.745e^-4	0.547	INTRON dpr8	TF binding site mE1_TFBS_inv
3R	3926090	3R_3926090_SNP [dm3] 3R_8100368_SNP [dm6]	G	A	2.753e^-4	0.547	SYNONYMOUS_CODING CG7900	TF binding site BDTNP1_TFBS_bcd
3R	18503411	3R_18503411_SNP [dm3] 3R_22677689_SNP [dm6]	T	C	2.755e^-4	0.547	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9763142	2L_9763142_SNP [dm3] 2L_9763142_SNP [dm6]	T	C	2.757e^-4	0.547	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16255789	3L_16255789_SNP [dm3] 3L_16262689_SNP [dm6]	G	T	2.760e^-4	0.547	UPSTREAM CG13071 & 1 other INTERGENIC
2L	10184228	2L_10184228_SNP [dm3] 2L_10184228_SNP [dm6]	C	G	2.767e^-4	0.547	INTRON Sur
2L	1015828	2L_1015828_SNP [dm3] 2L_1015828_SNP [dm6]	T	C	2.768e^-4	0.547	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1375695	3L_1375695_SNP [dm3] 3L_1375695_SNP [dm6]	C	T	2.768e^-4	0.547	INTRON Ptp61F & 1 other
2L	12246577	2L_12246577_SNP [dm3] 2L_12246577_SNP [dm6]	T	G	2.771e^-4	0.547	INTRON aret
X	4786899	X_4786899_SNP [dm3] X_4892866_SNP [dm6]	C	T	2.772e^-4	0.547	INTRON CG42594
2R	10506652	2R_10506652_SNP [dm3] 2R_14619147_SNP [dm6]	G	A	2.780e^-4	0.547	SYNONYMOUS_CODING Sec61beta DOWNSTREAM CG12863	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9434632	2R_9434632_SNP [dm3] 2R_13547127_SNP [dm6]	A	G	2.784e^-4	0.547	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16735287	3L_16735287_SNP [dm3] 3L_16742187_SNP [dm6]	T	C	2.793e^-4	0.547	INTERGENIC
2R	8444745	2R_8444745_SNP [dm3] 2R_12557240_SNP [dm6]	A	G	2.796e^-4	0.547	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1746113	3L_1746113_SNP [dm3] 3L_1746113_SNP [dm6]	C	T	2.796e^-4	0.547	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	1746115	3L_1746115_DEL [dm3] 3L_1746115_DEL [dm6]	CTG	C	2.796e^-4	0.547	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	23769821	3R_23769821_SNP [dm3] 3R_27944099_SNP [dm6]	G	T	2.797e^-4	0.547	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15297293	2R_15297293_SNP [dm3] 2R_19409788_SNP [dm6]	T	A	2.800e^-4	0.547	INTRON hts
3L	13850183	3L_13850183_SNP [dm3] 3L_13857083_SNP [dm6]	T	C	2.805e^-4	0.547	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
X	15996316	X_15996316_SNP [dm3] X_16102283_SNP [dm6]	T	G	2.808e^-4	0.547	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6282938	3L_6282938_SNP [dm3] 3L_6289838_SNP [dm6]	G	A	2.808e^-4	0.547	INTERGENIC
3L	14220060	3L_14220060_SNP [dm3] 3L_14226960_SNP [dm6]	C	A	2.810e^-4	0.547	INTRON nuf
3R	12683150	3R_12683150_SNP [dm3] 3R_16857428_SNP [dm6]	G	T	2.810e^-4	0.547	DOWNSTREAM iab-4 INTRON iab-8	insulator Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14460374	X_14460374_SNP [dm3] X_14566341_SNP [dm6]	T	C	2.822e^-4	0.547	INTERGENIC
2R	11564551	2R_11564551_SNP [dm3] 2R_15677046_SNP [dm6]	A	T	2.827e^-4	0.547	UPSTREAM fus DOWNSTREAM CG8207 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10029527	3L_10029527_SNP [dm3] 3L_10036427_SNP [dm6]	A	C	2.831e^-4	0.547	INTRON dpr6
2R	16764579	2R_16764579_SNP [dm3] 2R_20877074_SNP [dm6]	C	G	2.834e^-4	0.547	INTRON Ipk1
2R	9816961	2R_9816961_SNP [dm3] 2R_13929456_SNP [dm6]	A	C	2.836e^-4	0.547	INTRON shot
2R	10485001	2R_10485001_SNP [dm3] 2R_14597496_SNP [dm6]	C	T	2.838e^-4	0.547	SYNONYMOUS_CODING RpI1
2R	9385721	2R_9385721_SNP [dm3] 2R_13498216_SNP [dm6]	T	A	2.843e^-4	0.547	INTRON drk
2R	17853079	2R_17853079_SNP [dm3] 2R_21965574_SNP [dm6]	T	A	2.851e^-4	0.547	INTRON ppk9
3L	1273217	3L_1273217_DEL [dm3] 3L_1273217_DEL [dm6]	GC	T	2.853e^-4	0.547	INTRON CG9134
2L	5759634	2L_5759634_SNP [dm3] 2L_5759634_SNP [dm6]	C	T	2.855e^-4	0.547	INTRON CG11030	TF binding site mE1_TFBS_cad
2L	16491234	2L_16491234_SNP [dm3] 2L_16491234_SNP [dm6]	G	C	2.855e^-4	0.547	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	25517196	3R_25517196_SNP [dm3] 3R_29691474_SNP [dm6]	G	A	2.864e^-4	0.547	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13671033	3L_13671033_SNP [dm3] 3L_13677933_SNP [dm6]	G	A	2.864e^-4	0.547	INTRON bru-3
2R	6702840	2R_6702840_SNP [dm3] 2R_10815335_SNP [dm6]	A	T	2.874e^-4	0.547	UTR_3_PRIME CG7222 DOWNSTREAM dgo
2R	9368336	2R_9368336_SNP [dm3] 2R_13480831_SNP [dm6]	T	C	2.876e^-4	0.547	INTRON arr
2R	20062223	2R_20062223_INS [dm3] 2R_24174700_INS [dm6]	A	AA	2.887e^-4	0.547	UPSTREAM Nop60B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	18111427	X_18111427_SNP [dm3] X_18217394_SNP [dm6]	G	T	2.887e^-4	0.547	INTRON CG33639
3L	14536637	3L_14536637_SNP [dm3] 3L_14543537_SNP [dm6]	C	A	2.891e^-4	0.547	INTRON CG9238
2R	17118993	2R_17118993_SNP [dm3] 2R_21231488_SNP [dm6]	C	T	2.891e^-4	0.547	INTRON ASPP
2R	5853354	2R_5853354_SNP [dm3] 2R_9965849_SNP [dm6]	C	A	2.894e^-4	0.547	UPSTREAM CG1418 INTERGENIC
3L	19330997	3L_19330997_SNP [dm3] 3L_19337897_SNP [dm6]	C	T	2.897e^-4	0.547	UPSTREAM pip INTERGENIC
2L	1671797	2L_1671797_SNP [dm3] 2L_1671797_SNP [dm6]	C	G	2.898e^-4	0.547	INTRON chinmo
2L	8188463	2L_8188463_SNP [dm3] 2L_8188463_SNP [dm6]	A	C	2.898e^-4	0.547	SYNONYMOUS_CODING Piezo
3L	16276720	3L_16276720_SNP [dm3] 3L_16283620_SNP [dm6]	A	T	2.900e^-4	0.547	INTRON CG13048
2L	2443881	2L_2443881_SNP [dm3] 2L_2443881_SNP [dm6]	G	C	2.909e^-4	0.547	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	21899144	X_21899144_SNP [dm3] X_22497308_SNP [dm6]	T	C	2.912e^-4	0.547	SYNONYMOUS_CODING l_1_G0196
3R	26129678	3R_26129678_SNP [dm3] 3R_30303956_SNP [dm6]	T	A	2.912e^-4	0.547	INTRON hdc
3L	2867287	3L_2867287_SNP [dm3] 3L_2867287_SNP [dm6]	A	G	2.915e^-4	0.547	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	4730356	2L_4730356_DEL [dm3] 2L_4730356_DEL [dm6]	TGT	G	2.917e^-4	0.547	INTERGENIC
X	16569128	X_16569128_SNP [dm3] X_16675095_SNP [dm6]	A	G	2.917e^-4	0.547	INTRON CG13012
3L	1188977	3L_1188977_SNP [dm3] 3L_1188977_SNP [dm6]	G	A	2.919e^-4	0.547	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	3619600	2L_3619600_SNP [dm3] 2L_3619600_SNP [dm6]	C	A	2.924e^-4	0.547	SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	8047343	X_8047343_SNP [dm3] X_8153310_SNP [dm6]	G	T	2.924e^-4	0.547	SYNONYMOUS_CODING CG18262	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14346826	2L_14346826_SNP [dm3] 2L_14346826_SNP [dm6]	T	C	2.934e^-4	0.547	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2L	19725525	2L_19725525_SNP [dm3] 2L_19725525_SNP [dm6]	T	C	2.935e^-4	0.547	INTRON Lar
2L	11496623	2L_11496623_SNP [dm3] 2L_11496623_SNP [dm6]	G	A	2.945e^-4	0.547	DOWNSTREAM CG6488 INTERGENIC
2L	14346825	2L_14346825_SNP [dm3] 2L_14346825_SNP [dm6]	C	T	2.947e^-4	0.547	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2R	12364472	2R_12364472_SNP [dm3] 2R_16476967_SNP [dm6]	G	A	2.949e^-4	0.547	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.380e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.007862

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	12.5437	0.0019

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3018 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6988351	2L_6988351_SNP [dm3] 2L_6988351_SNP [dm6]	G	A	5.649e^-9	0.011	INTRON uif
2L	14521684	2L_14521684_SNP [dm3] 2L_14521684_SNP [dm6]	G	T	7.497e^-7	0.289	INTERGENIC
2L	14521682	2L_14521682_INS [dm3] 2L_14521682_INS [dm6]	T	TCC	8.978e^-7	0.289	INTERGENIC
3R	21292549	3R_21292549_SNP [dm3] 3R_25466827_SNP [dm6]	G	T	1.046e^-6	0.289	INTRON Fur1
2L	14769419	2L_14769419_SNP [dm3] 2L_14769419_SNP [dm6]	G	C	1.084e^-6	0.289	INTERGENIC
X	1655679	X_1655679_INS [dm3] X_1761646_INS [dm6]	G	GG	1.157e^-6	0.289	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1655602	X_1655602_SNP [dm3] X_1761569_SNP [dm6]	A	G	1.188e^-6	0.289	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1655613	X_1655613_SNP [dm3] X_1761580_SNP [dm6]	G	A	1.231e^-6	0.289	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6988388	2L_6988388_SNP [dm3] 2L_6988388_SNP [dm6]	C	A	1.524e^-6	0.317	INTRON uif
2L	14769431	2L_14769431_SNP [dm3] 2L_14769431_SNP [dm6]	A	C	1.864e^-6	0.35	INTERGENIC
X	1649242	X_1649242_SNP [dm3] X_1755209_SNP [dm6]	G	C	2.579e^-6	0.388	INTERGENIC
2R	6466482	2R_6466482_SNP [dm3] 2R_10578977_SNP [dm6]	G	A	2.632e^-6	0.388	INTRON psq
3R	11477587	3R_11477587_SNP [dm3] 3R_15651865_SNP [dm6]	A	T	2.902e^-6	0.388	INTERGENIC
2R	6507197	2R_6507197_SNP [dm3] 2R_10619692_SNP [dm6]	T	A	3.003e^-6	0.388	INTRON CG11883
3R	21292472	3R_21292472_SNP [dm3] 3R_25466750_SNP [dm6]	T	A	3.101e^-6	0.388	INTRON Fur1
2R	12367858	2R_12367858_SNP [dm3] 2R_16480353_SNP [dm6]	G	A	3.747e^-6	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14143544	2L_14143544_SNP [dm3] 2L_14143544_SNP [dm6]	C	A	3.825e^-6	0.416	INTRON CG17341
2R	6487366	2R_6487366_SNP [dm3] 2R_10599861_SNP [dm6]	T	G	3.993e^-6	0.416	INTRON psq
2L	4798244	2L_4798244_SNP [dm3] 2L_4798244_SNP [dm6]	C	A	4.411e^-6	0.416	INTRON Clect27
2R	6466180	2R_6466180_INS [dm3] 2R_10578675_INS [dm6]	G	GG	4.682e^-6	0.416	INTRON psq
2R	6487343	2R_6487343_SNP [dm3] 2R_10599838_SNP [dm6]	C	T	4.886e^-6	0.416	INTRON psq
X	2073442	X_2073442_SNP [dm3] X_2179409_SNP [dm6]	C	T	5.178e^-6	0.416	NON_SYNONYMOUS_CODING Cyp4ae1 DOWNSTREAM Cyp4d2 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14146266	2L_14146266_SNP [dm3] 2L_14146266_SNP [dm6]	C	G	5.404e^-6	0.416	INTRON CG17341
X	7727773	X_7727773_SNP [dm3] X_7833740_SNP [dm6]	C	G	6.602e^-6	0.416	INTRON CG1402
2R	10514046	2R_10514046_SNP [dm3] 2R_14626541_SNP [dm6]	A	G	6.694e^-6	0.416	INTERGENIC
2R	10512551	2R_10512551_SNP [dm3] 2R_14625046_SNP [dm6]	C	T	6.965e^-6	0.416	DOWNSTREAM snoRNA:Me28S-G2703c & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10509931	2R_10509931_SNP [dm3] 2R_14622426_SNP [dm6]	C	T	7.085e^-6	0.416	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	6951604	2R_6951604_SNP [dm3] 2R_11064099_SNP [dm6]	A	C	7.373e^-6	0.416	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10509945	2R_10509945_SNP [dm3] 2R_14622440_SNP [dm6]	G	C	7.497e^-6	0.416	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	499699	3R_499699_SNP [dm3] 3R_4673977_SNP [dm6]	A	T	7.612e^-6	0.416	INTRON CG43427 EXON CR44157
3L	9367031	3L_9367031_SNP [dm3] 3L_9373931_SNP [dm6]	T	C	8.717e^-6	0.416	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	10509708	2R_10509708_SNP [dm3] 2R_14622203_SNP [dm6]	G	T	8.904e^-6	0.416	UPSTREAM CG12863 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 1 other INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	14965916	2L_14965916_SNP [dm3] 2L_14965916_SNP [dm6]	G	A	9.080e^-6	0.416	INTRON CG42313
2R	6466259	2R_6466259_SNP [dm3] 2R_10578754_SNP [dm6]	G	C	9.312e^-6	0.416	INTRON psq
3L	4639118	3L_4639118_SNP [dm3] 3L_4639118_SNP [dm6]	T	C	9.461e^-6	0.416	INTRON axo
3L	4639057	3L_4639057_SNP [dm3] 3L_4639057_SNP [dm6]	A	T	9.625e^-6	0.416	INTRON axo
2R	10509688	2R_10509688_SNP [dm3] 2R_14622183_SNP [dm6]	G	C	9.774e^-6	0.416	UPSTREAM CG12863 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 1 other INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	4309448	2L_4309448_SNP [dm3] 2L_4309448_SNP [dm6]	T	G	9.943e^-6	0.416	INTRON tutl
2L	14143718	2L_14143718_SNP [dm3] 2L_14143718_SNP [dm6]	G	A	1.042e^-5	0.416	INTRON CG17341
2L	11023847	2L_11023847_SNP [dm3] 2L_11023847_SNP [dm6]	T	G	1.057e^-5	0.416	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	9649280	2L_9649280_SNP [dm3] 2L_9649280_SNP [dm6]	T	C	1.060e^-5	0.416	SYNONYMOUS_CODING Apoltp
X	1651635	X_1651635_SNP [dm3] X_1757602_SNP [dm6]	A	G	1.108e^-5	0.416	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4639043	3L_4639043_DEL [dm3] 3L_4639043_DEL [dm6]	CAAGCACCCA	C	1.145e^-5	0.416	INTRON axo
3L	4639056	3L_4639056_SNP [dm3] 3L_4639056_SNP [dm6]	A	T	1.145e^-5	0.416	INTRON axo
3L	4639097	3L_4639097_SNP [dm3] 3L_4639097_SNP [dm6]	C	T	1.145e^-5	0.416	INTRON axo
3L	9366788	3L_9366788_SNP [dm3] 3L_9373688_SNP [dm6]	T	A	1.148e^-5	0.416	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	4639113	3L_4639113_SNP [dm3] 3L_4639113_SNP [dm6]	T	G	1.185e^-5	0.416	INTRON axo
2L	6203848	2L_6203848_DEL [dm3] 2L_6203848_DEL [dm6]	GCAGTG	G	1.217e^-5	0.416	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	7727772	X_7727772_SNP [dm3] X_7833739_SNP [dm6]	T	C	1.220e^-5	0.416	INTRON CG1402
2L	14144660	2L_14144660_SNP [dm3] 2L_14144660_SNP [dm6]	T	C	1.301e^-5	0.416	INTRON CG17341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11336864	3L_11336864_DEL [dm3] 3L_11343764_DEL [dm6]	AAGCGGTGCGG...	A	1.321e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	4639081	3L_4639081_SNP [dm3] 3L_4639081_SNP [dm6]	T	C	1.329e^-5	0.416	INTRON axo
3L	8697353	3L_8697353_SNP [dm3] 3L_8704253_SNP [dm6]	C	T	1.336e^-5	0.416	INTERGENIC
2L	14143580	2L_14143580_SNP [dm3] 2L_14143580_SNP [dm6]	G	C	1.345e^-5	0.416	INTRON CG17341
2L	14098874	2L_14098874_SNP [dm3] 2L_14098874_SNP [dm6]	A	G	1.348e^-5	0.416	INTERGENIC
2L	6391073	2L_6391073_SNP [dm3] 2L_6391073_SNP [dm6]	T	C	1.397e^-5	0.416	INTRON CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15240063	3R_15240063_SNP [dm3] 3R_19414341_SNP [dm6]	A	G	1.415e^-5	0.416	INTRON CG31221	TF binding site mE1_TFBS_inv
X	13575140	X_13575140_SNP [dm3] X_13681107_SNP [dm6]	G	A	1.426e^-5	0.416	UPSTREAM CG12177 INTERGENIC
3L	4776056	3L_4776056_SNP [dm3] 3L_4776056_SNP [dm6]	G	C	1.471e^-5	0.416	INTRON RhoGEF64C
X	16262739	X_16262739_SNP [dm3] X_16368706_SNP [dm6]	T	C	1.480e^-5	0.416	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
2L	14521698	2L_14521698_SNP [dm3] 2L_14521698_SNP [dm6]	C	T	1.499e^-5	0.416	INTERGENIC
3L	4639110	3L_4639110_SNP [dm3] 3L_4639110_SNP [dm6]	T	A	1.507e^-5	0.416	INTRON axo
3L	4639092	3L_4639092_SNP [dm3] 3L_4639092_SNP [dm6]	A	G	1.510e^-5	0.416	INTRON axo
2L	6349489	2L_6349489_SNP [dm3] 2L_6349489_SNP [dm6]	G	T	1.561e^-5	0.416	UTR_3_PRIME CG9498
2R	10501631	2R_10501631_SNP [dm3] 2R_14614126_SNP [dm6]	A	G	1.564e^-5	0.416	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
X	22123717	X_22123717_SNP [dm3] X_22721881_SNP [dm6]	G	A	1.597e^-5	0.416	INTRON CR44997
2L	14769189	2L_14769189_SNP [dm3] 2L_14769189_SNP [dm6]	T	C	1.607e^-5	0.416	INTERGENIC
3L	2962699	3L_2962699_SNP [dm3] 3L_2962699_SNP [dm6]	C	A	1.639e^-5	0.416	INTRON Or63a
2R	10492095	2R_10492095_SNP [dm3] 2R_14604590_SNP [dm6]	C	G	1.656e^-5	0.416	UTR_3_PRIME CG12868 UPSTREAM tra2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22120821	X_22120821_SNP [dm3] X_22718985_SNP [dm6]	T	A	1.689e^-5	0.416	INTRON CR44997
2R	10499576	2R_10499576_SNP [dm3] 2R_14612071_SNP [dm6]	T	C	1.723e^-5	0.416	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2
3R	15193169	3R_15193169_SNP [dm3] 3R_19367447_SNP [dm6]	G	T	1.736e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16325335	3L_16325335_SNP [dm3] 3L_16332235_SNP [dm6]	A	T	1.766e^-5	0.416	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24628976	3R_24628976_SNP [dm3] 3R_28803254_SNP [dm6]	C	G	1.779e^-5	0.416	INTERGENIC
2L	14554215	2L_14554215_SNP [dm3] 2L_14554215_SNP [dm6]	C	G	1.787e^-5	0.416	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	24637130	3R_24637130_SNP [dm3] 3R_28811408_SNP [dm6]	A	T	1.793e^-5	0.416	UPSTREAM CG1646 & 1 other INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	10501756	2R_10501756_SNP [dm3] 2R_14614251_SNP [dm6]	T	A	1.810e^-5	0.416	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2R	10505423	2R_10505423_SNP [dm3] 2R_14617918_SNP [dm6]	C	T	1.810e^-5	0.416	UTR_5_PRIME Su_var_2-HP2 UPSTREAM Sec61beta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8836317	2L_8836317_SNP [dm3] 2L_8836317_SNP [dm6]	G	A	1.813e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	4572618	2R_4572618_SNP [dm3] 2R_8685113_SNP [dm6]	G	A	1.817e^-5	0.416	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14370866	2L_14370866_SNP [dm3] 2L_14370866_SNP [dm6]	T	G	1.825e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	7727776	X_7727776_SNP [dm3] X_7833743_SNP [dm6]	T	A	1.851e^-5	0.416	INTRON CG1402
3R	728124	3R_728124_SNP [dm3] 3R_4902402_SNP [dm6]	A	G	1.874e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9649310	2L_9649310_SNP [dm3] 2L_9649310_SNP [dm6]	C	T	1.894e^-5	0.416	SYNONYMOUS_CODING Apoltp
2R	6305695	2R_6305695_SNP [dm3] 2R_10418190_SNP [dm6]	T	C	1.925e^-5	0.416	UPSTREAM Prx2540-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	22123698	X_22123698_SNP [dm3] X_22721862_SNP [dm6]	T	C	1.926e^-5	0.416	INTRON CR44997
3R	24629106	3R_24629106_SNP [dm3] 3R_28803384_SNP [dm6]	C	A	1.961e^-5	0.416	INTERGENIC
2R	8857650	2R_8857650_SNP [dm3] 2R_12970145_SNP [dm6]	G	A	1.980e^-5	0.416	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9366939	3L_9366939_SNP [dm3] 3L_9373839_SNP [dm6]	T	G	2.020e^-5	0.416	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	728241	3R_728241_SNP [dm3] 3R_4902519_SNP [dm6]	T	A	2.027e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2962691	3L_2962691_SNP [dm3] 3L_2962691_SNP [dm6]	T	C	2.055e^-5	0.416	INTRON Or63a
3R	17804123	3R_17804123_SNP [dm3] 3R_21978401_SNP [dm6]	G	A	2.094e^-5	0.416	INTRON Eip93F
X	14569864	X_14569864_SNP [dm3] X_14675831_SNP [dm6]	C	A	2.104e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11074035	2R_11074035_SNP [dm3] 2R_15186530_SNP [dm6]	T	G	2.124e^-5	0.416	DOWNSTREAM CG43068 INTRON igl
2R	12035128	2R_12035128_SNP [dm3] 2R_16147623_SNP [dm6]	C	T	2.176e^-5	0.416	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2R	6230306	2R_6230306_SNP [dm3] 2R_10342801_SNP [dm6]	C	A	2.221e^-5	0.416	INTRON CG42732
2R	10487734	2R_10487734_SNP [dm3] 2R_14600229_SNP [dm6]	C	A	2.224e^-5	0.416	SYNONYMOUS_CODING RpI1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	3158154	2R_3158154_SNP [dm3] 2R_7270649_SNP [dm6]	T	G	2.243e^-5	0.416	INTERGENIC
2R	11074074	2R_11074074_SNP [dm3] 2R_15186569_SNP [dm6]	T	A	2.318e^-5	0.416	DOWNSTREAM CG43068 INTRON igl
3R	17831392	3R_17831392_SNP [dm3] 3R_22005670_SNP [dm6]	G	T	2.325e^-5	0.416	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11023837	2L_11023837_SNP [dm3] 2L_11023837_SNP [dm6]	T	G	2.355e^-5	0.416	INTRON Samuel	TF binding site mE1_TFBS_cad
2R	6230305	2R_6230305_SNP [dm3] 2R_10342800_SNP [dm6]	G	A	2.401e^-5	0.416	INTRON CG42732
3L	7907882	3L_7907882_SNP [dm3] 3L_7914782_SNP [dm6]	G	A	2.406e^-5	0.416	SYNONYMOUS_CODING CG8111 UPSTREAM CG32368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10496023	2R_10496023_SNP [dm3] 2R_14608518_SNP [dm6]	T	C	2.410e^-5	0.416	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8857751	2R_8857751_SNP [dm3] 2R_12970246_SNP [dm6]	C	G	2.413e^-5	0.416	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8891144	2L_8891144_SNP [dm3] 2L_8891144_SNP [dm6]	A	C	2.433e^-5	0.416	UPSTREAM CG42713 INTERGENIC
2R	13367676	2R_13367676_SNP [dm3] 2R_17480171_SNP [dm6]	C	T	2.453e^-5	0.416	SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14081890	2R_14081890_SNP [dm3] 2R_18194385_SNP [dm6]	C	T	2.478e^-5	0.416	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6820308	2L_6820308_SNP [dm3] 2L_6820308_SNP [dm6]	T	G	2.508e^-5	0.416	INTERGENIC
3L	9294304	3L_9294304_SNP [dm3] 3L_9301204_SNP [dm6]	G	C	2.509e^-5	0.416	INTERGENIC
X	20026539	X_20026539_DEL [dm3] X_20132506_DEL [dm6]	GGGTCGATG	G	2.514e^-5	0.416	INTERGENIC
X	12680458	X_12680458_SNP [dm3] X_12786425_SNP [dm6]	G	A	2.551e^-5	0.416	UTR_3_PRIME Pde9
2L	7592850	2L_7592850_SNP [dm3] 2L_7592850_SNP [dm6]	C	G	2.555e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11023830	2L_11023830_DEL [dm3] 2L_11023830_DEL [dm6]	TT	T	2.557e^-5	0.416	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	14169402	2L_14169402_SNP [dm3] 2L_14169402_SNP [dm6]	C	A	2.562e^-5	0.416	INTRON CG43333
X	22127134	X_22127134_SNP [dm3] X_22725298_SNP [dm6]	G	T	2.592e^-5	0.416	INTRON CR44997
2L	6988424	2L_6988424_SNP [dm3] 2L_6988424_SNP [dm6]	A	T	2.609e^-5	0.416	INTRON uif
2R	14835892	2R_14835892_SNP [dm3] 2R_18948387_SNP [dm6]	C	T	2.616e^-5	0.416	INTRON sano
3R	26152339	3R_26152339_SNP [dm3] 3R_30326617_SNP [dm6]	T	G	2.651e^-5	0.417	INTRON hdc
2L	1038703	2L_1038703_SNP [dm3] 2L_1038703_SNP [dm6]	C	T	2.671e^-5	0.417	DOWNSTREAM CG4415 INTRON IA-2
X	22148726	X_22148726_SNP [dm3] X_22746890_SNP [dm6]	T	C	2.710e^-5	0.419	INTRON CR44997
3R	728242	3R_728242_SNP [dm3] 3R_4902520_SNP [dm6]	T	C	2.727e^-5	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10509228	2R_10509228_SNP [dm3] 2R_14621723_SNP [dm6]	T	C	2.816e^-5	0.423	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1394243	2L_1394243_SNP [dm3] 2L_1394243_SNP [dm6]	G	A	2.823e^-5	0.423	SYNONYMOUS_CODING lea
3L	1495752	3L_1495752_SNP [dm3] 3L_1495752_SNP [dm6]	T	C	2.841e^-5	0.423	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
2L	10255960	2L_10255960_INS [dm3] 2L_10255960_INS [dm6]	A	AACA	2.842e^-5	0.423	UPSTREAM CG5676 DOWNSTREAM Pten INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	16486459	3L_16486459_SNP [dm3] 3L_16493359_SNP [dm6]	G	C	2.980e^-5	0.434	SYNONYMOUS_CODING CG42514 INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9638399	2R_9638399_SNP [dm3] 2R_13750894_SNP [dm6]	C	T	2.988e^-5	0.434	INTERGENIC
3L	16279182	3L_16279182_SNP [dm3] 3L_16286082_SNP [dm6]	T	G	2.993e^-5	0.434	UPSTREAM CG13047 INTERGENIC
3R	708538	3R_708538_SNP [dm3] 3R_4882816_SNP [dm6]	A	G	3.025e^-5	0.434	INTERGENIC
3L	9501756	3L_9501756_SNP [dm3] 3L_9508656_SNP [dm6]	A	G	3.076e^-5	0.434	INTRON CG3408	TF binding site BDTNP1_TFBS_dl
2R	7324925	2R_7324925_SNP [dm3] 2R_11437420_SNP [dm6]	G	A	3.187e^-5	0.434	INTRON CG7777
3L	9367467	3L_9367467_SNP [dm3] 3L_9374367_SNP [dm6]	G	A	3.198e^-5	0.434	SYNONYMOUS_CODING Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7727790	X_7727790_SNP [dm3] X_7833757_SNP [dm6]	G	T	3.262e^-5	0.434	INTRON CG1402
2R	6466965	2R_6466965_SNP [dm3] 2R_10579460_SNP [dm6]	A	T	3.262e^-5	0.434	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20026537	X_20026537_SNP [dm3] X_20132504_SNP [dm6]	A	G	3.274e^-5	0.434	INTERGENIC
3L	16279181	3L_16279181_SNP [dm3] 3L_16286081_SNP [dm6]	A	G	3.278e^-5	0.434	UPSTREAM CG13047 INTERGENIC
3L	2999029	3L_2999029_SNP [dm3] 3L_2999029_SNP [dm6]	C	T	3.304e^-5	0.434	INTERGENIC
3L	16696808	3L_16696808_DEL [dm3] 3L_16703708_DEL [dm6]	TT	T	3.315e^-5	0.434	INTRON Lasp & 1 other
2L	14093545	2L_14093545_SNP [dm3] 2L_14093545_SNP [dm6]	A	G	3.324e^-5	0.434	UTR_3_PRIME nAChRalpha5 DOWNSTREAM nAChRalpha5
2L	20986803	2L_20986803_SNP [dm3] 2L_20986803_SNP [dm6]	T	A	3.347e^-5	0.434	INTRON CG42238
2R	10505212	2R_10505212_SNP [dm3] 2R_14617707_SNP [dm6]	C	T	3.398e^-5	0.434	NON_SYNONYMOUS_CODING Su_var_2-HP2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2999019	3L_2999019_SNP [dm3] 3L_2999019_SNP [dm6]	C	T	3.404e^-5	0.434	INTERGENIC
2L	14208352	2L_14208352_SNP [dm3] 2L_14208352_SNP [dm6]	C	T	3.433e^-5	0.434	INTRON Dyrk2
2R	14639026	2R_14639026_SNP [dm3] 2R_18751521_SNP [dm6]	A	G	3.444e^-5	0.434	INTRON Hs3st-A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	6203706	2L_6203706_SNP [dm3] 2L_6203706_SNP [dm6]	G	T	3.464e^-5	0.434	INTRON CG34380	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10805838	3R_10805838_SNP [dm3] 3R_14980116_SNP [dm6]	G	A	3.466e^-5	0.434	INTERGENIC
2L	9649270	2L_9649270_SNP [dm3] 2L_9649270_SNP [dm6]	G	A	3.469e^-5	0.434	SYNONYMOUS_CODING Apoltp
3L	16279187	3L_16279187_SNP [dm3] 3L_16286087_SNP [dm6]	T	C	3.507e^-5	0.434	UPSTREAM CG13047 INTERGENIC
3L	12429959	3L_12429959_SNP [dm3] 3L_12436859_SNP [dm6]	T	G	3.532e^-5	0.434	INTERGENIC
X	10759691	X_10759691_SNP [dm3] X_10865658_SNP [dm6]	T	C	3.541e^-5	0.434	UTR_3_PRIME CG2186	TF binding site BDTNP1_TFBS_dl
2L	9648260	2L_9648260_SNP [dm3] 2L_9648260_SNP [dm6]	A	G	3.606e^-5	0.434	SYNONYMOUS_CODING Apoltp
3L	2999016	3L_2999016_SNP [dm3] 3L_2999016_SNP [dm6]	T	C	3.654e^-5	0.434	INTERGENIC
2L	14767961	2L_14767961_SNP [dm3] 2L_14767961_SNP [dm6]	T	C	3.660e^-5	0.434	DOWNSTREAM CG4701 INTERGENIC
2R	17850182	2R_17850182_DEL [dm3] 2R_21962677_DEL [dm6]	ATGTA	A	3.674e^-5	0.434	INTERGENIC
3L	11461609	3L_11461609_SNP [dm3] 3L_11468509_SNP [dm6]	A	G	3.681e^-5	0.434	INTERGENIC
2R	14081895	2R_14081895_SNP [dm3] 2R_18194390_SNP [dm6]	C	T	3.694e^-5	0.434	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25846547	3R_25846547_SNP [dm3] 3R_30020825_SNP [dm6]	C	T	3.714e^-5	0.434	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
2R	5900970	2R_5900970_SNP [dm3] 2R_10013465_SNP [dm6]	T	C	3.749e^-5	0.434	INTRON Pka-R2
3R	21713643	3R_21713643_SNP [dm3] 3R_25887921_SNP [dm6]	A	C	3.754e^-5	0.434	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
3R	18789201	3R_18789201_SNP [dm3] 3R_22963479_SNP [dm6]	T	A	3.766e^-5	0.434	DOWNSTREAM CR43655 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11487189	2L_11487189_SNP [dm3] 2L_11487189_SNP [dm6]	G	T	3.769e^-5	0.434	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2248949	3L_2248949_SNP [dm3] 3L_2248949_SNP [dm6]	C	T	3.787e^-5	0.434	DOWNSTREAM CG32301 INTRON CG32305
X	22126563	X_22126563_SNP [dm3] X_22724727_SNP [dm6]	C	A	3.812e^-5	0.434	INTRON CR44997
3L	2249548	3L_2249548_SNP [dm3] 3L_2249548_SNP [dm6]	C	T	3.822e^-5	0.434	DOWNSTREAM CG32301 INTRON CG32305	TF binding site mE1_TFBS_cad
2R	5900964	2R_5900964_SNP [dm3] 2R_10013459_SNP [dm6]	G	A	3.878e^-5	0.438	INTRON Pka-R2
3L	4639106	3L_4639106_SNP [dm3] 3L_4639106_SNP [dm6]	A	C	3.955e^-5	0.442	INTRON axo
2L	11023850	2L_11023850_SNP [dm3] 2L_11023850_SNP [dm6]	G	T	3.959e^-5	0.442	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	16279184	3L_16279184_SNP [dm3] 3L_16286084_SNP [dm6]	T	C	4.037e^-5	0.448	UPSTREAM CG13047 INTERGENIC
2R	17098444	2R_17098444_SNP [dm3] 2R_21210939_SNP [dm6]	A	T	4.109e^-5	0.453	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	9423824	2L_9423824_SNP [dm3] 2L_9423824_SNP [dm6]	C	A	4.133e^-5	0.453	NON_SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
3L	4350948	3L_4350948_SNP [dm3] 3L_4350948_SNP [dm6]	G	T	4.181e^-5	0.454	INTRON Cip4
X	22129293	X_22129293_SNP [dm3] X_22727457_SNP [dm6]	T	G	4.189e^-5	0.454	INTRON CR44997	transposable element FlyBase
2L	6990399	2L_6990399_SNP [dm3] 2L_6990399_SNP [dm6]	A	T	4.233e^-5	0.456	INTRON uif
2L	8888791	2L_8888791_SNP [dm3] 2L_8888791_SNP [dm6]	T	A	4.280e^-5	0.456	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	14081897	2R_14081897_SNP [dm3] 2R_18194392_SNP [dm6]	A	G	4.300e^-5	0.456	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16279192	3L_16279192_INS [dm3] 3L_16286092_INS [dm6]	T	ACGG	4.303e^-5	0.456	UPSTREAM CG13047 INTERGENIC
2L	6318984	2L_6318984_SNP [dm3] 2L_6318984_SNP [dm6]	A	T	4.461e^-5	0.46	INTRON Ddr
3L	9368439	3L_9368439_SNP [dm3] 3L_9375339_SNP [dm6]	C	A	4.465e^-5	0.46	UPSTREAM CG4461 DOWNSTREAM Hsp22 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5510474	2R_5510474_SNP [dm3] 2R_9622969_SNP [dm6]	T	C	4.469e^-5	0.46	INTRON Mmp2
3R	26071473	3R_26071473_SNP [dm3] 3R_30245751_SNP [dm6]	G	A	4.470e^-5	0.46	SYNONYMOUS_CODING CG9733
2L	14527619	2L_14527619_SNP [dm3] 2L_14527619_SNP [dm6]	G	C	4.481e^-5	0.46	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	22120555	X_22120555_SNP [dm3] X_22718719_SNP [dm6]	A	G	4.485e^-5	0.46	INTRON CR44997
3L	11636798	3L_11636798_SNP [dm3] 3L_11643698_SNP [dm6]	C	T	4.516e^-5	0.46	SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
X	13798273	X_13798273_SNP [dm3] X_13904240_SNP [dm6]	T	G	4.608e^-5	0.467	INTRON mamo
2L	6203925	2L_6203925_SNP [dm3] 2L_6203925_SNP [dm6]	G	T	4.763e^-5	0.478	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	14569832	X_14569832_SNP [dm3] X_14675799_SNP [dm6]	A	C	4.798e^-5	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14527615	2L_14527615_SNP [dm3] 2L_14527615_SNP [dm6]	C	G	4.809e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	22129292	X_22129292_SNP [dm3] X_22727456_SNP [dm6]	C	T	4.831e^-5	0.478	INTRON CR44997	transposable element FlyBase
X	6504889	X_6504889_INS [dm3] X_6610856_INS [dm6]	A	AC	4.893e^-5	0.478	INTRON pigs
3R	7321414	3R_7321414_SNP [dm3] 3R_11495692_SNP [dm6]	G	T	4.917e^-5	0.478	INTERGENIC
3R	24667271	3R_24667271_SNP [dm3] 3R_28841549_SNP [dm6]	C	T	4.956e^-5	0.478	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2L	2544605	2L_2544605_SNP [dm3] 2L_2544605_SNP [dm6]	T	A	4.969e^-5	0.478	INTERGENIC
2R	6557780	2R_6557780_SNP [dm3] 2R_10670275_SNP [dm6]	C	T	4.971e^-5	0.478	INTERGENIC
2L	14142237	2L_14142237_SNP [dm3] 2L_14142237_SNP [dm6]	C	A	4.989e^-5	0.478	INTRON CG17341
3L	2942027	3L_2942027_SNP [dm3] 3L_2942027_SNP [dm6]	T	A	5.011e^-5	0.478	INTRON Shab
2R	14639037	2R_14639037_SNP [dm3] 2R_18751532_SNP [dm6]	A	G	5.055e^-5	0.478	INTRON Hs3st-A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	1648665	X_1648665_SNP [dm3] X_1754632_SNP [dm6]	T	C	5.080e^-5	0.478	UPSTREAM Scgdelta INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11296666	2L_11296666_SNP [dm3] 2L_11296666_SNP [dm6]	C	T	5.126e^-5	0.478	INTERGENIC
2L	6361903	2L_6361903_SNP [dm3] 2L_6361903_SNP [dm6]	T	C	5.214e^-5	0.478	DOWNSTREAM CR44778 INTERGENIC
3L	20751282	3L_20751282_SNP [dm3] 3L_20758182_SNP [dm6]	G	A	5.224e^-5	0.478	UPSTREAM CG43251 INTERGENIC
X	22124697	X_22124697_SNP [dm3] X_22722861_SNP [dm6]	G	A	5.246e^-5	0.478	INTRON CR44997	transposable element FlyBase
2R	18741617	2R_18741617_SNP [dm3] 2R_22854094_SNP [dm6]	A	C	5.252e^-5	0.478	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20334002	2R_20334002_SNP [dm3] 2R_24446479_SNP [dm6]	C	T	5.259e^-5	0.478	SYNONYMOUS_CODING CG3483	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24661208	3R_24661208_SNP [dm3] 3R_28835486_SNP [dm6]	T	C	5.261e^-5	0.478	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13024518	3R_13024518_SNP [dm3] 3R_17198796_SNP [dm6]	T	A	5.287e^-5	0.478	INTRON Mur89F
3L	5659814	3L_5659814_SNP [dm3] 3L_5666714_SNP [dm6]	T	G	5.304e^-5	0.478	INTRON sif
X	22132739	X_22132739_SNP [dm3] X_22730903_SNP [dm6]	A	G	5.305e^-5	0.478	INTRON CR44997	transposable element FlyBase
2L	11080804	2L_11080804_SNP [dm3] 2L_11080804_SNP [dm6]	G	A	5.366e^-5	0.48	INTRON AstC
3L	12399515	3L_12399515_SNP [dm3] 3L_12406415_SNP [dm6]	G	A	5.384e^-5	0.48	UPSTREAM CG32103 INTRON CG32103
2R	12369494	2R_12369494_SNP [dm3] 2R_16481989_SNP [dm6]	C	T	5.404e^-5	0.48	INTERGENIC
2R	6220294	2R_6220294_SNP [dm3] 2R_10332789_SNP [dm6]	T	A	5.460e^-5	0.483	INTRON CG42732
X	6504921	X_6504921_SNP [dm3] X_6610888_SNP [dm6]	G	A	5.641e^-5	0.485	INTRON pigs
3L	16325135	3L_16325135_SNP [dm3] 3L_16332035_SNP [dm6]	A	G	5.647e^-5	0.485	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
2L	8891148	2L_8891148_DEL [dm3] 2L_8891148_DEL [dm6]	AGAT	A	5.654e^-5	0.485	UPSTREAM CG42713 INTERGENIC
X	4986913	X_4986913_INS [dm3] X_5092880_INS [dm6]	C	CAC	5.670e^-5	0.485	INTRON rg & 1 other
X	22129343	X_22129343_SNP [dm3] X_22727507_SNP [dm6]	T	A	5.676e^-5	0.485	INTRON CR44997
X	2071035	X_2071035_SNP [dm3] X_2177002_SNP [dm6]	G	A	5.700e^-5	0.485	SYNONYMOUS_CODING Cyp4d2 EXON CR44690
3L	8206886	3L_8206886_SNP [dm3] 3L_8213786_SNP [dm6]	A	G	5.713e^-5	0.485	DOWNSTREAM CG8006 INTERGENIC
X	1656229	X_1656229_SNP [dm3] X_1762196_SNP [dm6]	A	C	5.719e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20464076	2R_20464076_SNP [dm3] 2R_24576553_SNP [dm6]	G	A	5.745e^-5	0.485	INTRON Start1	TF binding site mE1_TFBS_sens
2R	18880898	2R_18880898_SNP [dm3] 2R_22993375_SNP [dm6]	G	A	5.745e^-5	0.485	DOWNSTREAM CG9896 INTRON twi
3L	15959500	3L_15959500_SNP [dm3] 3L_15966400_SNP [dm6]	C	A	5.817e^-5	0.489	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8839407	2L_8839407_DEL [dm3] 2L_8839407_DEL [dm6]	GCAACCAATTG...	G	5.921e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18878070	X_18878070_SNP [dm3] X_18984037_SNP [dm6]	A	G	5.931e^-5	0.492	INTRON CG43759
2R	8442808	2R_8442808_SNP [dm3] 2R_12555303_SNP [dm6]	G	A	5.995e^-5	0.492	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2L	18441190	2L_18441190_DEL [dm3] 2L_18441190_DEL [dm6]	TATCATTTTCAAATCATCAA...	GTACATGGCATGTA...	6.026e^-5	0.492	DOWNSTREAM RpS26 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21713687	3R_21713687_SNP [dm3] 3R_25887965_SNP [dm6]	T	C	6.035e^-5	0.492	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
2R	17797670	2R_17797670_SNP [dm3] 2R_21910165_SNP [dm6]	A	T	6.069e^-5	0.492	INTRON Fili
3L	16325111	3L_16325111_SNP [dm3] 3L_16332011_SNP [dm6]	C	A	6.097e^-5	0.492	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
3L	16325141	3L_16325141_SNP [dm3] 3L_16332041_SNP [dm6]	A	T	6.097e^-5	0.492	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
2R	6557765	2R_6557765_SNP [dm3] 2R_10670260_SNP [dm6]	G	A	6.117e^-5	0.492	INTERGENIC
3R	12038800	3R_12038800_SNP [dm3] 3R_16213078_SNP [dm6]	C	T	6.127e^-5	0.492	UPSTREAM CR45642 INTERGENIC
2R	8904745	2R_8904745_SNP [dm3] 2R_13017240_SNP [dm6]	C	T	6.169e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11440481	X_11440481_SNP [dm3] X_11546448_SNP [dm6]	T	A	6.249e^-5	0.492	UPSTREAM mir-2492 INTRON Drak
2L	9647732	2L_9647732_SNP [dm3] 2L_9647732_SNP [dm6]	C	A	6.259e^-5	0.492	SYNONYMOUS_CODING Apoltp
3R	24666662	3R_24666662_SNP [dm3] 3R_28840940_SNP [dm6]	A	G	6.279e^-5	0.492	INTRON Apc
3R	3316682	3R_3316682_SNP [dm3] 3R_7490960_SNP [dm6]	G	T	6.317e^-5	0.492	INTRON alpha-Est10	TF binding site mE1_TFBS_ttk
2R	12368056	2R_12368056_SNP [dm3] 2R_16480551_SNP [dm6]	T	A	6.406e^-5	0.492	INTERGENIC
3R	3816993	3R_3816993_SNP [dm3] 3R_7991271_SNP [dm6]	A	T	6.411e^-5	0.492	INTRON CG2781
X	1655167	X_1655167_SNP [dm3] X_1761134_SNP [dm6]	C	A	6.429e^-5	0.492	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10112100	X_10112100_SNP [dm3] X_10218067_SNP [dm6]	G	A	6.487e^-5	0.492	UTR_3_PRIME CG15308 DOWNSTREAM l_1_G0230 INTRON CR45629 EXON CR45629
X	4153332	X_4153332_SNP [dm3] X_4259299_SNP [dm6]	C	T	6.497e^-5	0.492	INTERGENIC
3R	24666600	3R_24666600_SNP [dm3] 3R_28840878_SNP [dm6]	C	G	6.517e^-5	0.492	INTRON Apc
X	15322005	X_15322005_SNP [dm3] X_15427972_SNP [dm6]	T	C	6.520e^-5	0.492	INTRON Cngl
2L	20834454	2L_20834454_SNP [dm3] 2L_20834454_SNP [dm6]	T	G	6.525e^-5	0.492	NON_SYNONYMOUS_CODING Oseg5
3R	24627229	3R_24627229_SNP [dm3] 3R_28801507_SNP [dm6]	G	A	6.567e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25846198	3R_25846198_SNP [dm3] 3R_30020476_SNP [dm6]	G	A	6.572e^-5	0.492	INTRON Mgat2
3L	1897404	3L_1897404_SNP [dm3] 3L_1897404_SNP [dm6]	G	A	6.582e^-5	0.492	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	17630716	3L_17630716_SNP [dm3] 3L_17637616_SNP [dm6]	C	T	6.587e^-5	0.492	SYNONYMOUS_CODING CG7497 DOWNSTREAM Pep
2R	18391373	2R_18391373_SNP [dm3] 2R_22503868_SNP [dm6]	A	T	6.612e^-5	0.492	INTRON px
3L	16279016	3L_16279016_SNP [dm3] 3L_16285916_SNP [dm6]	A	G	6.616e^-5	0.492	UPSTREAM CG13047 INTERGENIC
3L	9366888	3L_9366888_SNP [dm3] 3L_9373788_SNP [dm6]	T	A	6.781e^-5	0.501	START_GAINED Hsp22 UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	12234955	2R_12234955_SNP [dm3] 2R_16347450_SNP [dm6]	C	T	6.799e^-5	0.501	UTR_5_PRIME wcd DOWNSTREAM CG15710	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	8888960	2L_8888960_SNP [dm3] 2L_8888960_SNP [dm6]	T	G	6.815e^-5	0.501	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	2828944	3L_2828944_SNP [dm3] 3L_2828944_SNP [dm6]	T	C	6.887e^-5	0.503	INTRON CG43444
X	17564711	X_17564711_DEL [dm3] X_17670678_DEL [dm6]	CATGC	C	6.891e^-5	0.503	INTRON CG12990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16279154	3L_16279154_SNP [dm3] 3L_16286054_SNP [dm6]	C	G	6.920e^-5	0.503	UPSTREAM CG13047 INTERGENIC
2L	14173564	2L_14173564_SNP [dm3] 2L_14173564_SNP [dm6]	G	C	6.995e^-5	0.507	INTRON CG43333
2L	8836325	2L_8836325_SNP [dm3] 2L_8836325_SNP [dm6]	C	A	7.151e^-5	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	18358019	2L_18358019_SNP [dm3] 2L_18358019_SNP [dm6]	T	C	7.175e^-5	0.509	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	9292436	3L_9292436_SNP [dm3] 3L_9299336_SNP [dm6]	C	A	7.274e^-5	0.509	INTERGENIC
2L	20242	2L_20242_SNP [dm3] 2L_20242_SNP [dm6]	A	G	7.302e^-5	0.509	INTRON l_2_gl
3L	16330479	3L_16330479_SNP [dm3] 3L_16337379_SNP [dm6]	T	G	7.348e^-5	0.509	INTERGENIC
2L	2173149	2L_2173149_SNP [dm3] 2L_2173149_SNP [dm6]	C	G	7.349e^-5	0.509	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12035136	2R_12035136_SNP [dm3] 2R_16147631_SNP [dm6]	T	C	7.406e^-5	0.509	NON_SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
X	22131619	X_22131619_SNP [dm3] X_22729783_SNP [dm6]	T	C	7.418e^-5	0.509	INTRON CR44997	transposable element FlyBase
2L	2678479	2L_2678479_SNP [dm3] 2L_2678479_SNP [dm6]	C	T	7.449e^-5	0.509	INTRON CG31690
X	22120341	X_22120341_SNP [dm3] X_22718505_SNP [dm6]	G	A	7.570e^-5	0.509	INTRON CR44997
2L	1033593	2L_1033593_SNP [dm3] 2L_1033593_SNP [dm6]	T	A	7.582e^-5	0.509	INTRON IA-2
2L	14119409	2L_14119409_SNP [dm3] 2L_14119409_SNP [dm6]	G	A	7.612e^-5	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	10191903	2L_10191903_SNP [dm3] 2L_10191903_SNP [dm6]	C	T	7.613e^-5	0.509	UPSTREAM CG31874 INTRON Sur
3L	16325160	3L_16325160_SNP [dm3] 3L_16332060_SNP [dm6]	G	A	7.616e^-5	0.509	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
2R	19813323	2R_19813323_SNP [dm3] 2R_23925800_SNP [dm6]	C	T	7.633e^-5	0.509	UTR_3_PRIME Ca-P60A DOWNSTREAM kcc INTRON CG2812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19813749	2R_19813749_SNP [dm3] 2R_23926226_SNP [dm6]	G	A	7.633e^-5	0.509	UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON CG2812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8936706	2R_8936706_SNP [dm3] 2R_13049201_SNP [dm6]	C	G	7.642e^-5	0.509	UTR_3_PRIME CG13324
2L	15806	2L_15806_SNP [dm3] 2L_15806_SNP [dm6]	T	C	7.660e^-5	0.509	INTRON l_2_gl
2R	15571885	2R_15571885_SNP [dm3] 2R_19684380_SNP [dm6]	T	G	7.718e^-5	0.509	UPSTREAM CR44505 INTERGENIC
2R	19779261	2R_19779261_SNP [dm3] 2R_23891738_SNP [dm6]	T	C	7.760e^-5	0.509	NON_SYNONYMOUS_CODING DNA-ligI	TF binding site mE1_TFBS_sens
X	1657422	X_1657422_SNP [dm3] X_1763389_SNP [dm6]	A	G	7.771e^-5	0.509	INTERGENIC
2R	10499032	2R_10499032_SNP [dm3] 2R_14611527_SNP [dm6]	T	A	7.787e^-5	0.509	INTRON Su_var_2-HP2
2R	19813380	2R_19813380_SNP [dm3] 2R_23925857_SNP [dm6]	C	G	7.807e^-5	0.509	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14371395	2L_14371395_SNP [dm3] 2L_14371395_SNP [dm6]	C	A	7.824e^-5	0.509	INTERGENIC	TF binding site mE1_TFBS_sens
3L	1897270	3L_1897270_SNP [dm3] 3L_1897270_SNP [dm6]	G	A	7.831e^-5	0.509	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	10810159	3R_10810159_SNP [dm3] 3R_14984437_SNP [dm6]	T	A	7.851e^-5	0.509	INTERGENIC
X	2817838	X_2817838_SNP [dm3] X_2923805_SNP [dm6]	T	A	7.857e^-5	0.509	NON_SYNONYMOUS_CODING CG3588 UTR_3_PRIME CG3588 DOWNSTREAM CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
3R	15528234	3R_15528234_SNP [dm3] 3R_19702512_SNP [dm6]	G	A	7.876e^-5	0.509	INTERGENIC
3R	11477620	3R_11477620_SNP [dm3] 3R_15651898_SNP [dm6]	C	A	7.877e^-5	0.509	INTERGENIC
X	22123828	X_22123828_DEL [dm3] X_22721992_DEL [dm6]	AAGATGCCAGACGCTGCTAT...	A	7.890e^-5	0.509	INTRON CR44997
2R	7544685	2R_7544685_SNP [dm3] 2R_11657180_SNP [dm6]	C	A	7.906e^-5	0.509	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2961085	3L_2961085_SNP [dm3] 3L_2961085_SNP [dm6]	G	A	7.912e^-5	0.509	UPSTREAM Or63a & 1 other INTERGENIC
2L	14771840	2L_14771840_SNP [dm3] 2L_14771840_SNP [dm6]	G	A	7.947e^-5	0.509	INTERGENIC
2R	19812918	2R_19812918_SNP [dm3] 2R_23925395_SNP [dm6]	C	T	7.953e^-5	0.509	NON_SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16285410	3L_16285410_SNP [dm3] 3L_16292310_SNP [dm6]	T	A	8.004e^-5	0.509	INTERGENIC
3L	8260811	3L_8260811_SNP [dm3] 3L_8267711_SNP [dm6]	T	A	8.004e^-5	0.509	INTRON Dscam4
X	5699717	X_5699717_SNP [dm3] X_5805684_SNP [dm6]	G	T	8.066e^-5	0.509	DOWNSTREAM Cpr5C INTERGENIC
2R	19140480	2R_19140480_SNP [dm3] 2R_23252957_SNP [dm6]	G	A	8.110e^-5	0.509	INTERGENIC
3L	16278883	3L_16278883_DEL [dm3] 3L_16285783_DEL [dm6]	ATA	A	8.135e^-5	0.509	UPSTREAM CG13047 INTERGENIC
3R	10554276	3R_10554276_SNP [dm3] 3R_14728554_SNP [dm6]	C	A	8.162e^-5	0.509	INTRON CG7530
X	22133392	X_22133392_SNP [dm3] X_22731556_SNP [dm6]	A	C	8.168e^-5	0.509	INTRON CR44997
X	22131747	X_22131747_SNP [dm3] X_22729911_SNP [dm6]	A	G	8.213e^-5	0.509	INTRON CR44997	transposable element FlyBase
3L	10548943	3L_10548943_SNP [dm3] 3L_10555843_SNP [dm6]	G	T	8.311e^-5	0.509	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	2941866	3L_2941866_SNP [dm3] 3L_2941866_SNP [dm6]	T	C	8.319e^-5	0.509	INTRON Shab
3R	24637128	3R_24637128_SNP [dm3] 3R_28811406_SNP [dm6]	T	A	8.347e^-5	0.509	UPSTREAM CG1646 & 1 other INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	12038827	3R_12038827_SNP [dm3] 3R_16213105_SNP [dm6]	G	A	8.371e^-5	0.509	UPSTREAM CR45642 INTERGENIC
3R	25810371	3R_25810371_SNP [dm3] 3R_29984649_SNP [dm6]	G	A	8.426e^-5	0.509	INTRON CG7896
2R	5856956	2R_5856956_SNP [dm3] 2R_9969451_SNP [dm6]	T	C	8.470e^-5	0.509	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6340085	2L_6340085_INS [dm3] 2L_6340085_INS [dm6]	A	ACATATAGA	8.494e^-5	0.509	INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	26129678	3R_26129678_SNP [dm3] 3R_30303956_SNP [dm6]	T	A	8.542e^-5	0.509	INTRON hdc
3L	4504982	3L_4504982_SNP [dm3] 3L_4504982_SNP [dm6]	T	C	8.583e^-5	0.509	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
2L	4309469	2L_4309469_SNP [dm3] 2L_4309469_SNP [dm6]	A	G	8.606e^-5	0.509	INTRON tutl
X	12798262	X_12798262_SNP [dm3] X_12904229_SNP [dm6]	T	C	8.637e^-5	0.509	UTR_3_PRIME CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo
3R	18797328	3R_18797328_SNP [dm3] 3R_22971606_SNP [dm6]	A	G	8.651e^-5	0.509	INTERGENIC
2L	12513453	2L_12513453_SNP [dm3] 2L_12513453_SNP [dm6]	A	G	8.671e^-5	0.509	INTRON bun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19513899	X_19513899_SNP [dm3] X_19619866_SNP [dm6]	T	A	8.694e^-5	0.509	NON_SYNONYMOUS_CODING CG14221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9366859	3L_9366859_SNP [dm3] 3L_9373759_SNP [dm6]	G	T	8.727e^-5	0.509	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	6423256	2L_6423256_SNP [dm3] 2L_6423256_SNP [dm6]	C	T	8.747e^-5	0.509	UTR_5_PRIME Tig
3R	20717595	3R_20717595_DEL [dm3] 3R_24891873_DEL [dm6]	ACTCA	A	8.749e^-5	0.509	UPSTREAM CG31121 INTRON CG31121
2R	3158156	2R_3158156_DEL [dm3] 2R_7270651_DEL [dm6]	GAAAACCCCATAGC...	G	8.749e^-5	0.509	INTERGENIC
2L	20935617	2L_20935617_SNP [dm3] 2L_20935617_SNP [dm6]	G	T	8.782e^-5	0.509	INTERGENIC
X	22134138	X_22134138_SNP [dm3] X_22732302_SNP [dm6]	G	T	8.818e^-5	0.509	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	19203232	X_19203232_SNP [dm3] X_19309199_SNP [dm6]	A	T	8.841e^-5	0.509	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10486115	2R_10486115_SNP [dm3] 2R_14598610_SNP [dm6]	C	T	8.844e^-5	0.509	SYNONYMOUS_CODING RpI1
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	8.862e^-5	0.509	INTRON CR44997
2R	19854651	2R_19854651_SNP [dm3] 2R_23967128_SNP [dm6]	A	T	8.915e^-5	0.509	UTR_3_PRIME CG34213 UPSTREAM or DOWNSTREAM Alas
3R	24787928	3R_24787928_SNP [dm3] 3R_28962206_SNP [dm6]	G	A	8.927e^-5	0.509	INTRON CG14521
2R	6328332	2R_6328332_SNP [dm3] 2R_10440827_SNP [dm6]	T	G	8.980e^-5	0.509	INTRON Galphao	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9720621	3L_9720621_SNP [dm3] 3L_9727521_SNP [dm6]	T	G	9.002e^-5	0.509	UTR_5_PRIME Naa60 DOWNSTREAM defl	TF binding site mE1_TFBS_HSA
2L	2852715	2L_2852715_SNP [dm3] 2L_2852715_SNP [dm6]	G	A	9.004e^-5	0.509	INTRON CG3104
2L	9646889	2L_9646889_SNP [dm3] 2L_9646889_SNP [dm6]	A	G	9.023e^-5	0.509	NON_SYNONYMOUS_CODING Apoltp
2R	12369484	2R_12369484_SNP [dm3] 2R_16481979_SNP [dm6]	C	T	9.077e^-5	0.509	INTERGENIC
2L	6340083	2L_6340083_SNP [dm3] 2L_6340083_SNP [dm6]	A	G	9.086e^-5	0.509	INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
X	4087176	X_4087176_SNP [dm3] X_4193143_SNP [dm6]	T	C	9.126e^-5	0.509	INTRON Fas2	regulatory region REDfly_CRMs
2R	7032796	2R_7032796_SNP [dm3] 2R_11145291_SNP [dm6]	T	C	9.150e^-5	0.509	UPSTREAM CG13231 INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25854347	3R_25854347_DEL [dm3] 3R_30028625_DEL [dm6]	AAGA	TTT	9.157e^-5	0.509	INTRON Axn
X	6504916	X_6504916_SNP [dm3] X_6610883_SNP [dm6]	C	T	9.167e^-5	0.509	INTRON pigs
3L	10749972	3L_10749972_SNP [dm3] 3L_10756872_SNP [dm6]	G	A	9.242e^-5	0.509	INTERGENIC
2L	16923141	2L_16923141_SNP [dm3] 2L_16923141_SNP [dm6]	T	C	9.333e^-5	0.509	INTERGENIC
3R	12038766	3R_12038766_SNP [dm3] 3R_16213044_SNP [dm6]	G	A	9.341e^-5	0.509	UPSTREAM CR45642 INTERGENIC
2R	12564926	2R_12564926_SNP [dm3] 2R_16677421_SNP [dm6]	T	G	9.374e^-5	0.509	INTRON CG30463
3L	1356009	3L_1356009_SNP [dm3] 3L_1356009_SNP [dm6]	T	C	9.383e^-5	0.509	INTRON Ptp61F	TF binding site mE1_TFBS_inv
2L	6594035	2L_6594035_SNP [dm3] 2L_6594035_SNP [dm6]	A	G	9.417e^-5	0.509	INTRON CG11319
3R	24481979	3R_24481979_SNP [dm3] 3R_28656257_SNP [dm6]	C	T	9.483e^-5	0.509	INTERGENIC
3L	8260839	3L_8260839_SNP [dm3] 3L_8267739_SNP [dm6]	T	A	9.503e^-5	0.509	INTRON Dscam4
2R	10510762	2R_10510762_SNP [dm3] 2R_14623257_SNP [dm6]	T	G	9.504e^-5	0.509	UPSTREAM snoRNA:Me28S-A992 & 4 others DOWNSTREAM snoRNA:Me28S-C3227b & 3 others INTRON Uhg5	TF binding site mE1_TFBS_zfh1
X	2074935	X_2074935_SNP [dm3] X_2180902_SNP [dm6]	G	A	9.575e^-5	0.509	UTR_3_PRIME Cyp4ae1 UPSTREAM pn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12564903	2R_12564903_SNP [dm3] 2R_16677398_SNP [dm6]	C	T	9.589e^-5	0.509	INTRON CG30463
3L	11137598	3L_11137598_SNP [dm3] 3L_11144498_SNP [dm6]	T	G	9.592e^-5	0.509	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	14169398	2L_14169398_SNP [dm3] 2L_14169398_SNP [dm6]	A	C	9.641e^-5	0.509	INTRON CG43333
2R	8529637	2R_8529637_SNP [dm3] 2R_12642132_SNP [dm6]	A	G	9.724e^-5	0.509	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
2L	8891154	2L_8891154_SNP [dm3] 2L_8891154_SNP [dm6]	T	A	9.753e^-5	0.509	UPSTREAM CG42713 INTERGENIC
X	17650338	X_17650338_SNP [dm3] X_17756305_SNP [dm6]	G	A	9.785e^-5	0.509	INTERGENIC
3L	2829665	3L_2829665_SNP [dm3] 3L_2829665_SNP [dm6]	G	A	9.823e^-5	0.509	INTRON CG43444
2L	6325029	2L_6325029_SNP [dm3] 2L_6325029_SNP [dm6]	G	A	9.870e^-5	0.509	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9022199	2L_9022199_SNP [dm3] 2L_9022199_SNP [dm6]	T	C	9.884e^-5	0.509	INTERGENIC
3R	12038823	3R_12038823_SNP [dm3] 3R_16213101_SNP [dm6]	G	A	9.890e^-5	0.509	UPSTREAM CR45642 INTERGENIC
2L	8875931	2L_8875931_SNP [dm3] 2L_8875931_SNP [dm6]	T	C	9.890e^-5	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	10214956	2R_10214956_SNP [dm3] 2R_14327451_SNP [dm6]	G	A	1.000e^-4	0.509	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15941290	2L_15941290_SNP [dm3] 2L_15941290_SNP [dm6]	T	C	1.000e^-4	0.509	UPSTREAM CG12448 INTRON beat-Ib
3R	12346909	3R_12346909_SNP [dm3] 3R_16521187_SNP [dm6]	A	G	1.004e^-4	0.509	INTRON CG42342	TF binding site mE1_TFBS_cad
2R	10512334	2R_10512334_SNP [dm3] 2R_14624829_SNP [dm6]	A	T	1.006e^-4	0.509	DOWNSTREAM snoRNA:Me28S-G2703b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2L	7080428	2L_7080428_SNP [dm3] 2L_7080428_SNP [dm6]	C	T	1.006e^-4	0.509	INTRON Pvf2
3R	21647677	3R_21647677_SNP [dm3] 3R_25821955_SNP [dm6]	A	C	1.010e^-4	0.509	INTERGENIC
X	19069969	X_19069969_DEL [dm3] X_19175936_DEL [dm6]	CAATGCATAC	C	1.013e^-4	0.509	DOWNSTREAM CG7556 INTERGENIC
3R	15528323	3R_15528323_SNP [dm3] 3R_19702601_SNP [dm6]	T	G	1.014e^-4	0.509	INTERGENIC
2R	12564927	2R_12564927_SNP [dm3] 2R_16677422_SNP [dm6]	T	A	1.014e^-4	0.509	INTRON CG30463
X	22131870	X_22131870_SNP [dm3] X_22730034_SNP [dm6]	C	A	1.015e^-4	0.509	INTRON CR44997	transposable element FlyBase
2R	8857412	2R_8857412_SNP [dm3] 2R_12969907_SNP [dm6]	G	A	1.020e^-4	0.509	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9649158	2L_9649158_SNP [dm3] 2L_9649158_SNP [dm6]	A	T	1.024e^-4	0.509	INTRON Apoltp
2L	14370148	2L_14370148_SNP [dm3] 2L_14370148_SNP [dm6]	C	A	1.026e^-4	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	7579904	3L_7579904_SNP [dm3] 3L_7586804_SNP [dm6]	G	A	1.034e^-4	0.509	SYNONYMOUS_CODING CG14838
2L	1033260	2L_1033260_SNP [dm3] 2L_1033260_SNP [dm6]	C	G	1.044e^-4	0.509	INTRON IA-2
2L	14680240	2L_14680240_INS [dm3] 2L_14680240_INS [dm6]	T	TT	1.045e^-4	0.509	INTRON osp
2R	19778146	2R_19778146_SNP [dm3] 2R_23890623_SNP [dm6]	A	C	1.045e^-4	0.509	UPSTREAM Dcp1 INTRON DNA-ligI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	15113649	2L_15113649_SNP [dm3] 2L_15113649_SNP [dm6]	C	A	1.045e^-4	0.509	UTR_5_PRIME stc DOWNSTREAM CG15269	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22124903	X_22124903_SNP [dm3] X_22723067_SNP [dm6]	G	A	1.047e^-4	0.509	INTRON CR44997	transposable element FlyBase
2L	5768772	2L_5768772_SNP [dm3] 2L_5768772_SNP [dm6]	G	A	1.051e^-4	0.509	UTR_3_PRIME CG9171 UPSTREAM CR31912
2L	6457500	2L_6457500_SNP [dm3] 2L_6457500_SNP [dm6]	G	A	1.054e^-4	0.509	INTRON frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2226270	X_2226270_SNP [dm3] X_2332237_SNP [dm6]	A	C	1.055e^-4	0.509	INTRON phl & 1 other
X	2072545	X_2072545_SNP [dm3] X_2178512_SNP [dm6]	C	T	1.058e^-4	0.509	SYNONYMOUS_CODING Cyp4d2 UPSTREAM Cyp4ae1 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6423217	2L_6423217_SNP [dm3] 2L_6423217_SNP [dm6]	G	T	1.059e^-4	0.509	UTR_5_PRIME Tig
2L	6593967	2L_6593967_SNP [dm3] 2L_6593967_SNP [dm6]	A	T	1.062e^-4	0.509	INTRON CG11319
2L	6611998	2L_6611998_SNP [dm3] 2L_6611998_SNP [dm6]	A	G	1.062e^-4	0.509	INTRON CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	9513420	3L_9513420_SNP [dm3] 3L_9520320_SNP [dm6]	A	T	1.072e^-4	0.509	INTRON CG33700
2R	16180907	2R_16180907_SNP [dm3] 2R_20293402_SNP [dm6]	C	G	1.074e^-4	0.509	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2R	19910972	2R_19910972_SNP [dm3] 2R_24023449_SNP [dm6]	T	C	1.074e^-4	0.509	SYNONYMOUS_CODING CG11388 UPSTREAM Adk2 DOWNSTREAM CR45350	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4845174	2R_4845174_SNP [dm3] 2R_8957669_SNP [dm6]	T	G	1.078e^-4	0.509	INTRON babo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19598487	2L_19598487_SNP [dm3] 2L_19598487_SNP [dm6]	T	C	1.080e^-4	0.509	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16325276	3L_16325276_SNP [dm3] 3L_16332176_SNP [dm6]	C	T	1.081e^-4	0.509	SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12550814	2L_12550814_SNP [dm3] 2L_12550814_SNP [dm6]	G	A	1.085e^-4	0.509	INTERGENIC
2L	6988221	2L_6988221_SNP [dm3] 2L_6988221_SNP [dm6]	A	T	1.088e^-4	0.509	INTRON uif
3L	4636371	3L_4636371_SNP [dm3] 3L_4636371_SNP [dm6]	C	T	1.088e^-4	0.509	DOWNSTREAM axo INTRON axo
3R	21360565	3R_21360565_SNP [dm3] 3R_25534843_SNP [dm6]	A	C	1.090e^-4	0.509	INTRON msi
2R	10507291	2R_10507291_SNP [dm3] 2R_14619786_SNP [dm6]	G	C	1.091e^-4	0.509	DOWNSTREAM CG12863 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23865377	3R_23865377_SNP [dm3] 3R_28039655_SNP [dm6]	G	A	1.110e^-4	0.509	INTRON CG34362
2L	14723756	2L_14723756_SNP [dm3] 2L_14723756_SNP [dm6]	A	C	1.113e^-4	0.509	DOWNSTREAM CG42685 INTERGENIC
2R	6252854	2R_6252854_SNP [dm3] 2R_10365349_SNP [dm6]	C	T	1.113e^-4	0.509	UPSTREAM CG42732 INTRON CG42732
3R	15739870	3R_15739870_SNP [dm3] 3R_19914148_SNP [dm6]	T	G	1.116e^-4	0.509	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others
X	20262667	X_20262667_SNP [dm3] X_20391640_SNP [dm6]	C	T	1.123e^-4	0.509	SYNONYMOUS_CODING l_1_G0004 UPSTREAM jb DOWNSTREAM Syx16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11074071	2R_11074071_SNP [dm3] 2R_15186566_SNP [dm6]	T	C	1.128e^-4	0.509	DOWNSTREAM CG43068 INTRON igl
3L	12666813	3L_12666813_SNP [dm3] 3L_12673713_SNP [dm6]	A	T	1.128e^-4	0.509	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15528096	3R_15528096_DEL [dm3] 3R_19702374_DEL [dm6]	ATAATTGGAAAAGCGCAGGC...	A	1.135e^-4	0.509	INTERGENIC
X	22132680	X_22132680_SNP [dm3] X_22730844_SNP [dm6]	A	G	1.136e^-4	0.509	INTRON CR44997	transposable element FlyBase
2L	14209692	2L_14209692_SNP [dm3] 2L_14209692_SNP [dm6]	C	T	1.137e^-4	0.509	INTRON Dyrk2
3L	4636372	3L_4636372_SNP [dm3] 3L_4636372_SNP [dm6]	C	A	1.138e^-4	0.509	DOWNSTREAM axo INTRON axo
3L	6386603	3L_6386603_SNP [dm3] 3L_6393503_SNP [dm6]	A	G	1.139e^-4	0.509	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	9292356	3L_9292356_SNP [dm3] 3L_9299256_SNP [dm6]	A	G	1.141e^-4	0.509	INTERGENIC
2L	14771817	2L_14771817_SNP [dm3] 2L_14771817_SNP [dm6]	A	T	1.142e^-4	0.509	INTERGENIC
3R	15526387	3R_15526387_SNP [dm3] 3R_19700665_SNP [dm6]	G	T	1.144e^-4	0.509	INTERGENIC
3L	4643420	3L_4643420_SNP [dm3] 3L_4643420_SNP [dm6]	G	A	1.145e^-4	0.509	SYNONYMOUS_CODING axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8856645	2R_8856645_SNP [dm3] 2R_12969140_SNP [dm6]	A	C	1.150e^-4	0.509	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	13575162	X_13575162_SNP [dm3] X_13681129_SNP [dm6]	G	C	1.151e^-4	0.509	UPSTREAM CG12177 INTERGENIC
2L	2291441	2L_2291441_SNP [dm3] 2L_2291441_SNP [dm6]	G	T	1.152e^-4	0.509	UPSTREAM robl22E INTERGENIC
X	2069291	X_2069291_SNP [dm3] X_2175258_SNP [dm6]	C	A	1.153e^-4	0.509	START_GAINED Cyp4d14 UTR_5_PRIME Cyp4d14 UPSTREAM Cyp4d2 DOWNSTREAM CR44690 EXON CR45479
2R	12485864	2R_12485864_SNP [dm3] 2R_16598359_SNP [dm6]	C	T	1.155e^-4	0.509	UPSTREAM CG5089 INTRON CG8303
3R	25854229	3R_25854229_SNP [dm3] 3R_30028507_SNP [dm6]	G	T	1.159e^-4	0.509	INTRON Axn
3L	20788734	3L_20788734_SNP [dm3] 3L_20795634_SNP [dm6]	G	T	1.163e^-4	0.509	DOWNSTREAM CR43706 EXON CR43705	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4309523	2L_4309523_SNP [dm3] 2L_4309523_SNP [dm6]	G	C	1.165e^-4	0.509	INTRON tutl
2L	6391094	2L_6391094_SNP [dm3] 2L_6391094_SNP [dm6]	C	A	1.170e^-4	0.509	INTRON CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10950684	2R_10950684_SNP [dm3] 2R_15063179_SNP [dm6]	G	A	1.172e^-4	0.509	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	11332616	2L_11332616_SNP [dm3] 2L_11332616_SNP [dm6]	A	G	1.173e^-4	0.509	INTRON CR44584
3R	26143090	3R_26143090_SNP [dm3] 3R_30317368_SNP [dm6]	T	C	1.177e^-4	0.509	INTRON hdc
X	22148747	X_22148747_SNP [dm3] X_22746911_SNP [dm6]	A	C	1.178e^-4	0.509	INTRON CR44997
2L	8888623	2L_8888623_SNP [dm3] 2L_8888623_SNP [dm6]	A	T	1.179e^-4	0.509	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8889773	2L_8889773_SNP [dm3] 2L_8889773_SNP [dm6]	A	G	1.179e^-4	0.509	INTERGENIC
2R	10674702	2R_10674702_SNP [dm3] 2R_14787197_SNP [dm6]	G	A	1.183e^-4	0.509	INTRON kn
3L	5892978	3L_5892978_SNP [dm3] 3L_5899878_SNP [dm6]	T	C	1.186e^-4	0.509	SYNONYMOUS_CODING CG32409 DOWNSTREAM CG5592 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11273279	X_11273279_SNP [dm3] X_11379246_SNP [dm6]	A	T	1.189e^-4	0.509	INTRON dlg1
3L	9366578	3L_9366578_SNP [dm3] 3L_9373478_SNP [dm6]	G	A	1.192e^-4	0.509	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	1.194e^-4	0.509	INTRON mAChR-B
3R	24034553	3R_24034553_DEL [dm3] 3R_28208831_DEL [dm6]	TCCGTTTGT	T	1.194e^-4	0.509	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2148333	3L_2148333_SNP [dm3] 3L_2148333_SNP [dm6]	T	A	1.196e^-4	0.509	INTRON zormin
3L	1897110	3L_1897110_SNP [dm3] 3L_1897110_SNP [dm6]	G	A	1.200e^-4	0.509	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	13155451	3R_13155451_SNP [dm3] 3R_17329729_SNP [dm6]	G	A	1.200e^-4	0.509	INTRON beat-IIa
X	22130013	X_22130013_SNP [dm3] X_22728177_SNP [dm6]	G	A	1.200e^-4	0.509	INTRON CR44997	transposable element FlyBase
X	1467138	X_1467138_INS [dm3] X_1573105_INS [dm6]	T	TTT	1.204e^-4	0.509	INTRON Mur2B
X	18878080	X_18878080_SNP [dm3] X_18984047_SNP [dm6]	C	T	1.206e^-4	0.509	INTRON CG43759
3R	12670031	3R_12670031_SNP [dm3] 3R_16844309_SNP [dm6]	A	G	1.208e^-4	0.509	DOWNSTREAM iab-8 INTRON iab-8
2R	5883915	2R_5883915_SNP [dm3] 2R_9996410_SNP [dm6]	A	G	1.211e^-4	0.509	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2
X	12909517	X_12909517_SNP [dm3] X_13015484_SNP [dm6]	C	A	1.212e^-4	0.509	INTRON rad
3L	17147361	3L_17147361_SNP [dm3] 3L_17154261_SNP [dm6]	C	G	1.213e^-4	0.509	INTRON Rbp6	TF binding site mE1_TFBS_HSA
2L	347496	2L_347496_SNP [dm3] 2L_347496_SNP [dm6]	T	A	1.218e^-4	0.509	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	22123959	X_22123959_SNP [dm3] X_22722123_SNP [dm6]	C	T	1.219e^-4	0.509	INTRON CR44997
3L	5909680	3L_5909680_SNP [dm3] 3L_5916580_SNP [dm6]	T	C	1.220e^-4	0.509	INTRON CG13288
3R	18169141	3R_18169141_SNP [dm3] 3R_22343419_SNP [dm6]	A	T	1.227e^-4	0.509	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	1.228e^-4	0.509	INTRON CG11030	TF binding site mE1_TFBS_cad
3R	24034528	3R_24034528_SNP [dm3] 3R_28208806_SNP [dm6]	G	C	1.229e^-4	0.509	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	8478445	2R_8478445_SNP [dm3] 2R_12590940_SNP [dm6]	T	C	1.237e^-4	0.509	DOWNSTREAM CR30055 INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	14164202	2L_14164202_SNP [dm3] 2L_14164202_SNP [dm6]	G	A	1.239e^-4	0.509	SYNONYMOUS_CODING CG43333 UPSTREAM CG43332
3L	13109135	3L_13109135_SNP [dm3] 3L_13116035_SNP [dm6]	C	T	1.244e^-4	0.509	SYNONYMOUS_CODING trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17278586	2R_17278586_SNP [dm3] 2R_21391081_SNP [dm6]	T	C	1.245e^-4	0.509	INTRON Acox57D-d	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5900821	2R_5900821_SNP [dm3] 2R_10013316_SNP [dm6]	A	T	1.254e^-4	0.509	INTRON Pka-R2
X	2696219	X_2696219_SNP [dm3] X_2802186_SNP [dm6]	C	T	1.258e^-4	0.509	INTRON kirre
X	17402563	X_17402563_SNP [dm3] X_17508530_SNP [dm6]	G	A	1.258e^-4	0.509	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5143035	2R_5143035_SNP [dm3] 2R_9255530_SNP [dm6]	C	T	1.260e^-4	0.509	SYNONYMOUS_CODING Pkn
2L	11676509	2L_11676509_SNP [dm3] 2L_11676509_SNP [dm6]	C	T	1.260e^-4	0.509	INTERGENIC
3L	1375695	3L_1375695_SNP [dm3] 3L_1375695_SNP [dm6]	C	T	1.262e^-4	0.509	INTRON Ptp61F & 1 other
X	17156388	X_17156388_SNP [dm3] X_17262355_SNP [dm6]	G	T	1.263e^-4	0.509	UPSTREAM f INTRON f	transposable element FlyBase
2L	8888632	2L_8888632_SNP [dm3] 2L_8888632_SNP [dm6]	A	T	1.263e^-4	0.509	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12635743	X_12635743_SNP [dm3] X_12741710_SNP [dm6]	A	T	1.268e^-4	0.509	UPSTREAM CR45623 INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14771830	2L_14771830_INS [dm3] 2L_14771830_INS [dm6]	T	TA	1.271e^-4	0.509	INTERGENIC
2L	8888631	2L_8888631_SNP [dm3] 2L_8888631_SNP [dm6]	T	A	1.273e^-4	0.509	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13366469	2R_13366469_SNP [dm3] 2R_17478964_SNP [dm6]	T	C	1.273e^-4	0.509	UTR_3_PRIME CG43110 UPSTREAM veil INTRON veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8317289	2L_8317289_SNP [dm3] 2L_8317289_SNP [dm6]	A	C	1.274e^-4	0.509	SYNONYMOUS_CODING mtsh UTR_3_PRIME mtsh DOWNSTREAM CG7806	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4627416	3L_4627416_SNP [dm3] 3L_4627416_SNP [dm6]	A	C	1.278e^-4	0.509	SPLICE_SITE_REGION Rpd3 UPSTREAM CR45438 INTRON Rpd3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20003653	3L_20003653_SNP [dm3] 3L_20010553_SNP [dm6]	T	C	1.279e^-4	0.509	SYNONYMOUS_CODING kug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4201939	2L_4201939_SNP [dm3] 2L_4201939_SNP [dm6]	T	C	1.281e^-4	0.509	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
3L	5660855	3L_5660855_SNP [dm3] 3L_5667755_SNP [dm6]	A	G	1.283e^-4	0.509	INTRON sif
X	6707329	X_6707329_SNP [dm3] X_6813296_SNP [dm6]	T	C	1.285e^-4	0.509	UTR_3_PRIME pod1 UPSTREAM iav
2L	2805800	2L_2805800_SNP [dm3] 2L_2805800_SNP [dm6]	A	C	1.287e^-4	0.509	INTRON daw
2L	6457506	2L_6457506_SNP [dm3] 2L_6457506_SNP [dm6]	A	G	1.292e^-4	0.509	INTRON frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14680420	2L_14680420_SNP [dm3] 2L_14680420_SNP [dm6]	C	A	1.295e^-4	0.509	INTRON osp
2R	9006819	2R_9006819_SNP [dm3] 2R_13119314_SNP [dm6]	C	G	1.295e^-4	0.509	INTRON CG13325
2L	6988217	2L_6988217_SNP [dm3] 2L_6988217_SNP [dm6]	A	G	1.296e^-4	0.509	INTRON uif
2L	7707975	2L_7707975_SNP [dm3] 2L_7707975_SNP [dm6]	C	G	1.298e^-4	0.509	DOWNSTREAM CR44990 INTRON Tep3
3L	6812801	3L_6812801_SNP [dm3] 3L_6819701_SNP [dm6]	G	C	1.300e^-4	0.509	INTERGENIC
2L	9424429	2L_9424429_SNP [dm3] 2L_9424429_SNP [dm6]	T	C	1.300e^-4	0.509	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4757483	2L_4757483_DEL [dm3] 2L_4757483_DEL [dm6]	ACA	A	1.301e^-4	0.509	INTRON CG15630
2R	5900819	2R_5900819_SNP [dm3] 2R_10013314_SNP [dm6]	T	C	1.302e^-4	0.509	INTRON Pka-R2
2L	15169424	2L_15169424_SNP [dm3] 2L_15169424_SNP [dm6]	T	C	1.303e^-4	0.509	INTRON CG4168
X	4964848	X_4964848_DEL [dm3] X_5070815_DEL [dm6]	AA	A	1.307e^-4	0.509	UTR_3_PRIME ovo DOWNSTREAM CG32767 & 1 other
2L	4309542	2L_4309542_SNP [dm3] 2L_4309542_SNP [dm6]	C	T	1.312e^-4	0.509	INTRON tutl
2R	10215018	2R_10215018_SNP [dm3] 2R_14327513_SNP [dm6]	G	C	1.312e^-4	0.509	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22129415	X_22129415_SNP [dm3] X_22727579_SNP [dm6]	T	C	1.314e^-4	0.509	INTRON CR44997
X	13861378	X_13861378_SNP [dm3] X_13967345_SNP [dm6]	G	A	1.317e^-4	0.509	UTR_5_PRIME mamo
3R	17321469	3R_17321469_SNP [dm3] 3R_21495747_SNP [dm6]	A	C	1.318e^-4	0.509	INTERGENIC
2R	20689740	2R_20689740_SNP [dm3] 2R_24802217_SNP [dm6]	C	T	1.321e^-4	0.509	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	15868304	3L_15868304_SNP [dm3] 3L_15875204_SNP [dm6]	T	A	1.333e^-4	0.512	DOWNSTREAM CR44051 INTRON pHCl
2L	3551997	2L_3551997_SNP [dm3] 2L_3551997_SNP [dm6]	C	T	1.346e^-4	0.516	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	940721	X_940721_SNP [dm3] X_1046688_SNP [dm6]	T	C	1.352e^-4	0.517	SYNONYMOUS_CODING CG42259 UPSTREAM CR44779 DOWNSTREAM su_w[a]_	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22129416	X_22129416_SNP [dm3] X_22727580_SNP [dm6]	T	A	1.360e^-4	0.519	INTRON CR44997
3L	10749997	3L_10749997_SNP [dm3] 3L_10756897_SNP [dm6]	A	C	1.371e^-4	0.52	INTERGENIC
X	22125001	X_22125001_SNP [dm3] X_22723165_SNP [dm6]	T	G	1.371e^-4	0.52	INTRON CR44997	transposable element FlyBase
3L	16330431	3L_16330431_SNP [dm3] 3L_16337331_SNP [dm6]	T	A	1.373e^-4	0.52	INTERGENIC
2L	15982093	2L_15982093_SNP [dm3] 2L_15982093_SNP [dm6]	T	A	1.375e^-4	0.52	DOWNSTREAM CG10839 INTERGENIC
2L	14164158	2L_14164158_SNP [dm3] 2L_14164158_SNP [dm6]	A	G	1.382e^-4	0.52	SYNONYMOUS_CODING CG43333 UPSTREAM CG43332
X	12090730	X_12090730_SNP [dm3] X_12196697_SNP [dm6]	T	A	1.385e^-4	0.52	INTRON Ten-a
3L	2266216	3L_2266216_SNP [dm3] 3L_2266216_SNP [dm6]	T	C	1.386e^-4	0.52	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	22132423	X_22132423_SNP [dm3] X_22730587_SNP [dm6]	G	C	1.388e^-4	0.52	INTRON CR44997	transposable element FlyBase
2L	14163807	2L_14163807_SNP [dm3] 2L_14163807_SNP [dm6]	T	C	1.389e^-4	0.52	UTR_3_PRIME CG43333 UPSTREAM CG43332
3L	21577645	3L_21577645_SNP [dm3] 3L_21584545_SNP [dm6]	G	A	1.396e^-4	0.52	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8583754	2R_8583754_SNP [dm3] 2R_12696249_SNP [dm6]	A	C	1.398e^-4	0.52	INTERGENIC
2L	5038547	2L_5038547_SNP [dm3] 2L_5038547_SNP [dm6]	A	C	1.399e^-4	0.52	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11568933	3L_11568933_SNP [dm3] 3L_11575833_SNP [dm6]	A	G	1.401e^-4	0.52	SPLICE_SITE_REGION CG33489 INTRON CG33489
2L	6577098	2L_6577098_SNP [dm3] 2L_6577098_SNP [dm6]	G	A	1.405e^-4	0.52	SPLICE_SITE_REGION CG11319 INTRON CG11319
2L	14169382	2L_14169382_SNP [dm3] 2L_14169382_SNP [dm6]	T	C	1.406e^-4	0.52	INTRON CG43333
2L	3316492	2L_3316492_SNP [dm3] 2L_3316492_SNP [dm6]	A	T	1.412e^-4	0.52	DOWNSTREAM CG3326 INTRON CG3277
2L	14377512	2L_14377512_SNP [dm3] 2L_14377512_SNP [dm6]	C	A	1.419e^-4	0.52	DOWNSTREAM ppk INTERGENIC
2L	9380003	2L_9380003_SNP [dm3] 2L_9380003_SNP [dm6]	G	A	1.421e^-4	0.52	INTRON Shawl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6375472	2L_6375472_SNP [dm3] 2L_6375472_SNP [dm6]	A	G	1.430e^-4	0.52	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	22122549	X_22122549_SNP [dm3] X_22720713_SNP [dm6]	G	T	1.432e^-4	0.52	INTRON CR44997	transposable element FlyBase
2R	13355911	2R_13355911_SNP [dm3] 2R_17468406_SNP [dm6]	C	T	1.433e^-4	0.52	NON_SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22131297	X_22131297_SNP [dm3] X_22729461_SNP [dm6]	C	T	1.442e^-4	0.52	INTRON CR44997	transposable element FlyBase
X	22130600	X_22130600_SNP [dm3] X_22728764_SNP [dm6]	C	T	1.447e^-4	0.52	INTRON CR44997
X	22261310	X_22261310_INS [dm3] X_22859474_INS [dm6]	C	CC	1.448e^-4	0.52	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22126115	X_22126115_SNP [dm3] X_22724279_SNP [dm6]	C	T	1.449e^-4	0.52	INTRON CR44997	transposable element FlyBase
2L	6457342	2L_6457342_SNP [dm3] 2L_6457342_SNP [dm6]	C	T	1.450e^-4	0.52	SYNONYMOUS_CODING frj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5900814	2R_5900814_SNP [dm3] 2R_10013309_SNP [dm6]	T	C	1.452e^-4	0.52	INTRON Pka-R2
3L	6094871	3L_6094871_DEL [dm3] 3L_6101771_DEL [dm6]	CCAAGC	C	1.454e^-4	0.52	INTRON Ets65A
X	1656519	X_1656519_SNP [dm3] X_1762486_SNP [dm6]	G	A	1.455e^-4	0.52	INTERGENIC
3R	14954925	3R_14954925_SNP [dm3] 3R_19129203_SNP [dm6]	G	C	1.473e^-4	0.52	NON_SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2L	19722700	2L_19722700_SNP [dm3] 2L_19722700_SNP [dm6]	A	T	1.474e^-4	0.52	INTRON Lar
2L	14502787	2L_14502787_SNP [dm3] 2L_14502787_SNP [dm6]	A	T	1.480e^-4	0.52	INTERGENIC
3L	14076630	3L_14076630_SNP [dm3] 3L_14083530_SNP [dm6]	G	A	1.480e^-4	0.52	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
2R	5857084	2R_5857084_SNP [dm3] 2R_9969579_SNP [dm6]	T	C	1.481e^-4	0.52	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14768906	2L_14768906_INS [dm3] 2L_14768906_INS [dm6]	T	TTAT	1.485e^-4	0.52	INTERGENIC
3L	20744735	3L_20744735_SNP [dm3] 3L_20751635_SNP [dm6]	T	G	1.488e^-4	0.52	INTERGENIC
2R	8445234	2R_8445234_SNP [dm3] 2R_12557729_SNP [dm6]	T	C	1.491e^-4	0.52	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad
2R	2435533	2R_2435533_DEL [dm3] 2R_6548028_DEL [dm6]	TATTCCATTGATGGTATCAA...	C	1.494e^-4	0.52	INTRON jing
2L	1038563	2L_1038563_SNP [dm3] 2L_1038563_SNP [dm6]	C	T	1.495e^-4	0.52	DOWNSTREAM CG4415 INTRON IA-2 & 1 other
2R	8904738	2R_8904738_SNP [dm3] 2R_13017233_SNP [dm6]	T	A	1.497e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8857638	2R_8857638_SNP [dm3] 2R_12970133_SNP [dm6]	C	T	1.502e^-4	0.52	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6084798	3L_6084798_SNP [dm3] 3L_6091698_SNP [dm6]	A	T	1.505e^-4	0.52	UTR_3_PRIME CG13293 DOWNSTREAM CG10469
X	2226260	X_2226260_SNP [dm3] X_2332227_SNP [dm6]	A	T	1.511e^-4	0.52	INTRON phl & 1 other
X	13226335	X_13226335_SNP [dm3] X_13332302_SNP [dm6]	T	A	1.512e^-4	0.52	DOWNSTREAM Jafrac1 INTERGENIC
3L	5660667	3L_5660667_SNP [dm3] 3L_5667567_SNP [dm6]	G	A	1.515e^-4	0.52	INTRON sif
2L	5754628	2L_5754628_SNP [dm3] 2L_5754628_SNP [dm6]	T	C	1.515e^-4	0.52	INTRON CG11030
3L	12616712	3L_12616712_SNP [dm3] 3L_12623612_SNP [dm6]	T	C	1.516e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2074934	X_2074934_SNP [dm3] X_2180901_SNP [dm6]	T	A	1.516e^-4	0.52	UTR_3_PRIME Cyp4ae1 UPSTREAM pn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6702675	2R_6702675_SNP [dm3] 2R_10815170_SNP [dm6]	A	C	1.517e^-4	0.52	UTR_3_PRIME CG7222 DOWNSTREAM dgo
X	13575107	X_13575107_SNP [dm3] X_13681074_SNP [dm6]	G	A	1.518e^-4	0.52	UPSTREAM CG12177 INTERGENIC
X	22124626	X_22124626_SNP [dm3] X_22722790_SNP [dm6]	T	C	1.523e^-4	0.52	INTRON CR44997	transposable element FlyBase
X	22132485	X_22132485_SNP [dm3] X_22730649_SNP [dm6]	T	C	1.527e^-4	0.52	INTRON CR44997	transposable element FlyBase
2L	13920418	2L_13920418_SNP [dm3] 2L_13920418_SNP [dm6]	T	C	1.536e^-4	0.52	DOWNSTREAM CG16886 INTRON Ance-3	TF binding site mE1_TFBS_sbb
2L	6361878	2L_6361878_SNP [dm3] 2L_6361878_SNP [dm6]	A	G	1.537e^-4	0.52	DOWNSTREAM CR44778 INTERGENIC
3L	8582460	3L_8582460_SNP [dm3] 3L_8589360_SNP [dm6]	C	T	1.538e^-4	0.52	UPSTREAM CG43078 INTRON CG43078
2R	10533758	2R_10533758_SNP [dm3] 2R_14646253_SNP [dm6]	G	C	1.542e^-4	0.52	UTR_3_PRIME CG10139 DOWNSTREAM CG10139
2L	9649237	2L_9649237_SNP [dm3] 2L_9649237_SNP [dm6]	T	G	1.544e^-4	0.52	SYNONYMOUS_CODING Apoltp
X	22133397	X_22133397_SNP [dm3] X_22731561_SNP [dm6]	G	A	1.546e^-4	0.52	INTRON CR44997
2R	8339046	2R_8339046_SNP [dm3] 2R_12451541_SNP [dm6]	C	A	1.547e^-4	0.52	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	24667125	3R_24667125_SNP [dm3] 3R_28841403_SNP [dm6]	T	A	1.547e^-4	0.52	INTRON Apc	TF binding site BDTNP1_TFBS_twi
3L	7202296	3L_7202296_SNP [dm3] 3L_7209196_SNP [dm6]	T	C	1.551e^-4	0.52	INTERGENIC
2L	14502773	2L_14502773_SNP [dm3] 2L_14502773_SNP [dm6]	T	G	1.551e^-4	0.52	INTERGENIC
2L	14502789	2L_14502789_SNP [dm3] 2L_14502789_SNP [dm6]	A	T	1.553e^-4	0.52	INTERGENIC
3L	9366275	3L_9366275_SNP [dm3] 3L_9373175_SNP [dm6]	C	T	1.553e^-4	0.52	SYNONYMOUS_CODING Hsp67Bb UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16868151	2L_16868151_SNP [dm3] 2L_16868151_SNP [dm6]	C	T	1.554e^-4	0.52	INTERGENIC
X	22125020	X_22125020_SNP [dm3] X_22723184_SNP [dm6]	A	G	1.556e^-4	0.52	INTRON CR44997	transposable element FlyBase
2R	5857098	2R_5857098_SNP [dm3] 2R_9969593_SNP [dm6]	G	A	1.559e^-4	0.52	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19069982	X_19069982_SNP [dm3] X_19175949_SNP [dm6]	T	C	1.559e^-4	0.52	DOWNSTREAM CG7556 INTERGENIC
X	14079061	X_14079061_SNP [dm3] X_14185028_SNP [dm6]	G	A	1.563e^-4	0.52	SYNONYMOUS_CODING CG32603	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14178894	2L_14178894_SNP [dm3] 2L_14178894_SNP [dm6]	T	A	1.564e^-4	0.52	INTRON CG43333
2L	2173099	2L_2173099_SNP [dm3] 2L_2173099_SNP [dm6]	C	T	1.566e^-4	0.52	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	2249546	3L_2249546_SNP [dm3] 3L_2249546_SNP [dm6]	T	A	1.569e^-4	0.52	DOWNSTREAM CG32301 INTRON CG32305	TF binding site mE1_TFBS_cad
3R	24034523	3R_24034523_SNP [dm3] 3R_28208801_SNP [dm6]	G	A	1.569e^-4	0.52	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	878557	2L_878557_SNP [dm3] 2L_878557_SNP [dm6]	G	A	1.571e^-4	0.52	SYNONYMOUS_CODING CG15824 DOWNSTREAM ninaA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19321037	2L_19321037_SNP [dm3] 2L_19321037_SNP [dm6]	G	C	1.572e^-4	0.52	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9292385	3L_9292385_SNP [dm3] 3L_9299285_SNP [dm6]	G	T	1.572e^-4	0.52	INTERGENIC
X	2072736	X_2072736_DEL [dm3] X_2178703_DEL [dm6]	TGCATA	T	1.582e^-4	0.522	UTR_3_PRIME Cyp4d2 UPSTREAM Cyp4ae1 INTRON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	5852869	X_5852869_SNP [dm3] X_5958836_SNP [dm6]	C	T	1.588e^-4	0.522	NON_SYNONYMOUS_CODING fs_1_M3 DOWNSTREAM CG6067	TF binding site mE1_TFBS_HSA
2R	6526147	2R_6526147_SNP [dm3] 2R_10638642_SNP [dm6]	A	G	1.592e^-4	0.522	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
X	2069364	X_2069364_SNP [dm3] X_2175331_SNP [dm6]	G	C	1.604e^-4	0.522	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
2R	8743100	2R_8743100_SNP [dm3] 2R_12855595_SNP [dm6]	G	A	1.607e^-4	0.522	UPSTREAM CG17574 INTRON CG17574
2L	16894959	2L_16894959_SNP [dm3] 2L_16894959_SNP [dm6]	G	A	1.612e^-4	0.522	INTRON tweek
2L	22141	2L_22141_SNP [dm3] 2L_22141_SNP [dm6]	T	A	1.616e^-4	0.522	SYNONYMOUS_CODING Ir21a UPSTREAM l_2_gl EXON CR43609	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11336934	3L_11336934_SNP [dm3] 3L_11343834_SNP [dm6]	T	C	1.617e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	16733330	3L_16733330_SNP [dm3] 3L_16740230_SNP [dm6]	C	T	1.617e^-4	0.522	DOWNSTREAM CG9701 INTERGENIC
3R	15526384	3R_15526384_INS [dm3] 3R_19700662_INS [dm6]	T	TGT	1.621e^-4	0.522	INTERGENIC
2R	2573856	2R_2573856_DEL [dm3] 2R_6686351_DEL [dm6]	TTGCAAGGCGGTGT...	T	1.626e^-4	0.522	INTRON CG9422 & 1 other
X	22126501	X_22126501_SNP [dm3] X_22724665_SNP [dm6]	G	A	1.641e^-4	0.522	INTRON CR44997
3L	11137577	3L_11137577_SNP [dm3] 3L_11144477_SNP [dm6]	A	T	1.642e^-4	0.522	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	22123227	X_22123227_SNP [dm3] X_22721391_SNP [dm6]	C	A	1.650e^-4	0.522	INTRON CR44997	transposable element FlyBase
X	18878121	X_18878121_SNP [dm3] X_18984088_SNP [dm6]	G	A	1.650e^-4	0.522	INTRON CG43759
2R	17829407	2R_17829407_SNP [dm3] 2R_21941902_SNP [dm6]	T	G	1.651e^-4	0.522	INTRON Fili
2L	14371512	2L_14371512_SNP [dm3] 2L_14371512_SNP [dm6]	A	C	1.661e^-4	0.522	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9419365	2L_9419365_SNP [dm3] 2L_9419365_SNP [dm6]	A	G	1.662e^-4	0.522	INTRON Mco1
2R	10510392	2R_10510392_SNP [dm3] 2R_14622887_SNP [dm6]	T	C	1.663e^-4	0.522	UPSTREAM snoRNA:Me18S-A1061 & 3 others DOWNSTREAM snoRNA:Me28S-C3227a & 3 others INTRON Uhg5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	17662386	2R_17662386_SNP [dm3] 2R_21774881_SNP [dm6]	T	A	1.665e^-4	0.522	DOWNSTREAM CG4021 INTERGENIC
2R	17662396	2R_17662396_SNP [dm3] 2R_21774891_SNP [dm6]	T	A	1.665e^-4	0.522	DOWNSTREAM CG4021 INTERGENIC
3L	8824910	3L_8824910_SNP [dm3] 3L_8831810_SNP [dm6]	T	A	1.665e^-4	0.522	INTRON dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11137595	3L_11137595_SNP [dm3] 3L_11144495_SNP [dm6]	T	C	1.666e^-4	0.522	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	24787898	3R_24787898_SNP [dm3] 3R_28962176_SNP [dm6]	T	C	1.669e^-4	0.522	INTRON CG14521
3L	15867778	3L_15867778_SNP [dm3] 3L_15874678_SNP [dm6]	T	G	1.669e^-4	0.522	INTRON pHCl
2L	6803722	2L_6803722_SNP [dm3] 2L_6803722_SNP [dm6]	G	A	1.671e^-4	0.522	NON_SYNONYMOUS_CODING CG11236 UPSTREAM CG17377 DOWNSTREAM CG17375	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	11137590	3L_11137590_SNP [dm3] 3L_11144490_SNP [dm6]	T	C	1.673e^-4	0.522	INTRON CG32082	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	16706600	2R_16706600_SNP [dm3] 2R_20819095_SNP [dm6]	G	A	1.674e^-4	0.522	INTERGENIC
2R	3144248	2R_3144248_DEL [dm3] 2R_7256743_DEL [dm6]	TGTCTTA	GAAG	1.675e^-4	0.522	DOWNSTREAM CR45280 INTERGENIC
X	19451109	X_19451109_SNP [dm3] X_19557076_SNP [dm6]	A	G	1.682e^-4	0.522	DOWNSTREAM mir-2499 EXON mir-2499
2L	4311248	2L_4311248_SNP [dm3] 2L_4311248_SNP [dm6]	C	T	1.682e^-4	0.522	INTRON tutl
2L	18435358	2L_18435358_SNP [dm3] 2L_18435358_SNP [dm6]	A	C	1.687e^-4	0.522	INTERGENIC
3L	2341641	3L_2341641_SNP [dm3] 3L_2341641_SNP [dm6]	T	C	1.690e^-4	0.522	INTRON MsR1
X	22123161	X_22123161_SNP [dm3] X_22721325_SNP [dm6]	C	A	1.691e^-4	0.522	INTRON CR44997	transposable element FlyBase
2L	5762	2L_5762_SNP [dm3] 2L_5762_SNP [dm6]	T	C	1.692e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10499046	2R_10499046_DEL [dm3] 2R_14611541_DEL [dm6]	AA	A	1.693e^-4	0.522	INTRON Su_var_2-HP2
2R	10510891	2R_10510891_DEL [dm3] 2R_14623386_DEL [dm6]	TATT	T	1.696e^-4	0.522	UPSTREAM snoRNA:Me28S-G2703a & 3 others DOWNSTREAM snoRNA:Me28S-C3227b & 4 others INTRON Uhg5	TF binding site mE1_TFBS_kn
X	22123025	X_22123025_SNP [dm3] X_22721189_SNP [dm6]	T	A	1.698e^-4	0.522	INTRON CR44997	transposable element FlyBase
3R	24675523	3R_24675523_SNP [dm3] 3R_28849801_SNP [dm6]	C	T	1.698e^-4	0.522	INTRON spg
2L	9945645	2L_9945645_SNP [dm3] 2L_9945645_SNP [dm6]	C	G	1.698e^-4	0.522	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9414067	2L_9414067_SNP [dm3] 2L_9414067_SNP [dm6]	T	C	1.700e^-4	0.522	INTRON Shawl
X	22124753	X_22124753_SNP [dm3] X_22722917_SNP [dm6]	G	C	1.701e^-4	0.522	INTRON CR44997	transposable element FlyBase
2R	13833266	2R_13833266_SNP [dm3] 2R_17945761_SNP [dm6]	C	T	1.703e^-4	0.522	INTERGENIC
X	22134949	X_22134949_SNP [dm3] X_22733113_SNP [dm6]	T	C	1.704e^-4	0.522	INTRON CR44997
3R	21714146	3R_21714146_DEL [dm3] 3R_25888424_DEL [dm6]	GGCGAGCGGTC...	G	1.706e^-4	0.522	UPSTREAM Lnk DOWNSTREAM SppL INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	5754647	2L_5754647_SNP [dm3] 2L_5754647_SNP [dm6]	T	C	1.712e^-4	0.522	INTRON CG11030
3L	4673779	3L_4673779_SNP [dm3] 3L_4673779_SNP [dm6]	T	G	1.715e^-4	0.522	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26763486	3R_26763486_SNP [dm3] 3R_30937764_SNP [dm6]	T	C	1.718e^-4	0.522	UPSTREAM CG15550 INTERGENIC
X	22130619	X_22130619_SNP [dm3] X_22728783_SNP [dm6]	C	T	1.721e^-4	0.522	INTRON CR44997
2L	6325000	2L_6325000_SNP [dm3] 2L_6325000_SNP [dm6]	C	T	1.722e^-4	0.522	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13119975	3R_13119975_SNP [dm3] 3R_17294253_SNP [dm6]	C	T	1.723e^-4	0.522	INTERGENIC
X	22126380	X_22126380_SNP [dm3] X_22724544_SNP [dm6]	A	G	1.724e^-4	0.522	INTRON CR44997	transposable element FlyBase
X	22122855	X_22122855_SNP [dm3] X_22721019_SNP [dm6]	C	T	1.734e^-4	0.524	INTRON CR44997	transposable element FlyBase
2L	13999527	2L_13999527_SNP [dm3] 2L_13999527_SNP [dm6]	G	A	1.736e^-4	0.524	INTRON rk
X	20262311	X_20262311_SNP [dm3] X_20391284_SNP [dm6]	C	G	1.736e^-4	0.524	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3928253	3L_3928253_SNP [dm3] 3L_3928253_SNP [dm6]	A	T	1.742e^-4	0.524	INTRON Eip63F-1
2L	11676745	2L_11676745_SNP [dm3] 2L_11676745_SNP [dm6]	G	A	1.752e^-4	0.526	INTERGENIC
2R	14458577	2R_14458577_SNP [dm3] 2R_18571072_SNP [dm6]	C	A	1.754e^-4	0.526	INTRON GEFmeso
3R	12038771	3R_12038771_SNP [dm3] 3R_16213049_SNP [dm6]	C	G	1.758e^-4	0.526	UPSTREAM CR45642 INTERGENIC
2R	18485099	2R_18485099_SNP [dm3] 2R_22597594_SNP [dm6]	G	A	1.765e^-4	0.526	UTR_5_PRIME CG4269 UPSTREAM CR45328	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5921367	X_5921367_SNP [dm3] X_6027334_SNP [dm6]	T	G	1.766e^-4	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13574670	X_13574670_SNP [dm3] X_13680637_SNP [dm6]	A	T	1.767e^-4	0.526	UPSTREAM CG12177 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10214987	2R_10214987_SNP [dm3] 2R_14327482_SNP [dm6]	T	G	1.768e^-4	0.526	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18435376	2L_18435376_SNP [dm3] 2L_18435376_SNP [dm6]	T	A	1.769e^-4	0.526	INTERGENIC
3R	15193189	3R_15193189_SNP [dm3] 3R_19367467_SNP [dm6]	G	A	1.776e^-4	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	17989359	3L_17989359_SNP [dm3] 3L_17996259_SNP [dm6]	C	T	1.784e^-4	0.527	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	8307809	2R_8307809_SNP [dm3] 2R_12420304_SNP [dm6]	G	A	1.786e^-4	0.527	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
3R	25842766	3R_25842766_SNP [dm3] 3R_30017044_SNP [dm6]	C	A	1.792e^-4	0.527	INTRON Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11490570	2L_11490570_SNP [dm3] 2L_11490570_SNP [dm6]	A	T	1.797e^-4	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10570323	2R_10570323_SNP [dm3] 2R_14682818_SNP [dm6]	A	C	1.798e^-4	0.527	INTRON mspo
3R	18832259	3R_18832259_SNP [dm3] 3R_23006537_SNP [dm6]	C	T	1.801e^-4	0.527	INTRON CG34375
X	22130977	X_22130977_SNP [dm3] X_22729141_SNP [dm6]	A	G	1.803e^-4	0.527	INTRON CR44997
2L	1038569	2L_1038569_SNP [dm3] 2L_1038569_SNP [dm6]	T	A	1.804e^-4	0.527	DOWNSTREAM CG4415 INTRON IA-2 & 1 other
X	22129957	X_22129957_SNP [dm3] X_22728121_SNP [dm6]	A	T	1.806e^-4	0.527	INTRON CR44997
2R	8478456	2R_8478456_SNP [dm3] 2R_12590951_SNP [dm6]	C	A	1.807e^-4	0.527	DOWNSTREAM CR30055 INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	20262309	X_20262309_SNP [dm3] X_20391282_SNP [dm6]	A	T	1.807e^-4	0.527	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16279185	3L_16279185_SNP [dm3] 3L_16286085_SNP [dm6]	G	T	1.809e^-4	0.527	UPSTREAM CG13047 INTERGENIC
3L	18083446	3L_18083446_SNP [dm3] 3L_18090346_SNP [dm6]	C	T	1.811e^-4	0.527	SYNONYMOUS_CODING CG13698
3L	5660844	3L_5660844_SNP [dm3] 3L_5667744_SNP [dm6]	T	G	1.815e^-4	0.527	INTRON sif
2L	14371525	2L_14371525_SNP [dm3] 2L_14371525_SNP [dm6]	T	G	1.821e^-4	0.528	INTERGENIC	TF binding site mE1_TFBS_sens
3R	23865234	3R_23865234_SNP [dm3] 3R_28039512_SNP [dm6]	A	T	1.827e^-4	0.528	INTRON CG34362
3L	9506767	3L_9506767_SNP [dm3] 3L_9513667_SNP [dm6]	T	C	1.831e^-4	0.528	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
X	15325084	X_15325084_SNP [dm3] X_15431051_SNP [dm6]	T	C	1.833e^-4	0.528	INTRON Cngl
X	15037965	X_15037965_SNP [dm3] X_15143932_SNP [dm6]	C	A	1.841e^-4	0.528	INTRON CG9095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16330429	3L_16330429_SNP [dm3] 3L_16337329_SNP [dm6]	A	G	1.846e^-4	0.528	INTERGENIC
X	2087852	X_2087852_DEL [dm3] X_2193819_DEL [dm6]	AA	A	1.849e^-4	0.528	UTR_5_PRIME CG14053 UPSTREAM CG14053 & 1 other INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	1867708	3L_1867708_SNP [dm3] 3L_1867708_SNP [dm6]	A	C	1.851e^-4	0.528	UTR_3_PRIME CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14192618	2L_14192618_SNP [dm3] 2L_14192618_SNP [dm6]	C	A	1.858e^-4	0.528	INTRON Dyrk2
2R	11876362	2R_11876362_DEL [dm3] 2R_15988857_DEL [dm6]	CC	C	1.858e^-4	0.528	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	4087136	X_4087136_SNP [dm3] X_4193103_SNP [dm6]	C	G	1.862e^-4	0.528	INTRON Fas2	regulatory region REDfly_CRMs
X	22129962	X_22129962_SNP [dm3] X_22728126_SNP [dm6]	G	C	1.868e^-4	0.528	INTRON CR44997
3L	4477542	3L_4477542_SNP [dm3] 3L_4477542_SNP [dm6]	C	T	1.869e^-4	0.528	INTERGENIC
X	16293444	X_16293444_SNP [dm3] X_16399411_SNP [dm6]	T	A	1.877e^-4	0.528	DOWNSTREAM CG9981 INTRON mei-41	TF binding site mE1_TFBS_chinmo
2R	16181063	2R_16181063_SNP [dm3] 2R_20293558_SNP [dm6]	C	T	1.883e^-4	0.528	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2L	6593920	2L_6593920_SNP [dm3] 2L_6593920_SNP [dm6]	C	T	1.890e^-4	0.528	INTRON CG11319
2R	12369486	2R_12369486_SNP [dm3] 2R_16481981_SNP [dm6]	T	C	1.893e^-4	0.528	INTERGENIC
2L	10017588	2L_10017588_SNP [dm3] 2L_10017588_SNP [dm6]	C	T	1.897e^-4	0.528	UPSTREAM CG13131 INTERGENIC
2R	19778533	2R_19778533_SNP [dm3] 2R_23891010_SNP [dm6]	G	A	1.898e^-4	0.528	SYNONYMOUS_CODING DNA-ligI UPSTREAM Dcp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8389096	2R_8389096_SNP [dm3] 2R_12501591_SNP [dm6]	G	T	1.899e^-4	0.528	DOWNSTREAM s-cup INTRON fdl
X	22148735	X_22148735_SNP [dm3] X_22746899_SNP [dm6]	T	A	1.902e^-4	0.528	INTRON CR44997
2L	18358372	2L_18358372_SNP [dm3] 2L_18358372_SNP [dm6]	T	A	1.904e^-4	0.528	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	5012116	2R_5012116_SNP [dm3] 2R_9124611_SNP [dm6]	C	T	1.908e^-4	0.528	INTRON CG18659
3L	2248967	3L_2248967_SNP [dm3] 3L_2248967_SNP [dm6]	T	C	1.909e^-4	0.528	SPLICE_SITE_REGION CG32305 DOWNSTREAM CG32301 INTRON CG32305
X	19203271	X_19203271_SNP [dm3] X_19309238_SNP [dm6]	T	G	1.920e^-4	0.528	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5921347	X_5921347_SNP [dm3] X_6027314_SNP [dm6]	C	G	1.922e^-4	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11074417	2R_11074417_SNP [dm3] 2R_15186912_SNP [dm6]	T	G	1.927e^-4	0.528	DOWNSTREAM CG43068 INTRON igl
3R	27561141	3R_27561141_SNP [dm3] 3R_31735419_SNP [dm6]	T	C	1.929e^-4	0.528	DOWNSTREAM CstF-50 & 1 other INTERGENIC
3L	1495619	3L_1495619_SNP [dm3] 3L_1495619_SNP [dm6]	C	G	1.929e^-4	0.528	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
2L	6044790	2L_6044790_SNP [dm3] 2L_6044790_SNP [dm6]	C	T	1.934e^-4	0.528	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9293593	3L_9293593_SNP [dm3] 3L_9300493_SNP [dm6]	A	T	1.936e^-4	0.528	INTERGENIC
2R	7324009	2R_7324009_SNP [dm3] 2R_11436504_SNP [dm6]	A	C	1.937e^-4	0.528	INTRON CG7777
3L	4504954	3L_4504954_SNP [dm3] 3L_4504954_SNP [dm6]	T	A	1.938e^-4	0.528	NON_SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
X	22124349	X_22124349_SNP [dm3] X_22722513_SNP [dm6]	G	A	1.940e^-4	0.528	INTRON CR44997	transposable element FlyBase
2R	10510942	2R_10510942_SNP [dm3] 2R_14623437_SNP [dm6]	C	A	1.940e^-4	0.528	UPSTREAM snoRNA:Me28S-G2703a & 3 others DOWNSTREAM snoRNA:Me28S-U1848 & 3 others EXON Uhg5	TF binding site mE1_TFBS_kn
X	13574685	X_13574685_SNP [dm3] X_13680652_SNP [dm6]	G	T	1.943e^-4	0.528	UPSTREAM CG12177 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13574701	X_13574701_SNP [dm3] X_13680668_SNP [dm6]	T	A	1.943e^-4	0.528	UPSTREAM CG12177 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6629338	2L_6629338_SNP [dm3] 2L_6629338_SNP [dm6]	C	T	1.945e^-4	0.528	INTRON Oatp26F
X	18743111	X_18743111_SNP [dm3] X_18849078_SNP [dm6]	A	G	1.948e^-4	0.528	UTR_5_PRIME CG34422 UPSTREAM CG7280 INTRON CG34422
3L	8548360	3L_8548360_SNP [dm3] 3L_8555260_SNP [dm6]	A	C	1.949e^-4	0.528	INTRON rhea
3L	9501957	3L_9501957_SNP [dm3] 3L_9508857_SNP [dm6]	G	A	1.951e^-4	0.528	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	713220	3R_713220_SNP [dm3] 3R_4887498_SNP [dm6]	A	C	1.953e^-4	0.528	INTERGENIC
2R	10214982	2R_10214982_SNP [dm3] 2R_14327477_SNP [dm6]	A	G	1.954e^-4	0.528	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18558269	3L_18558269_SNP [dm3] 3L_18565169_SNP [dm6]	A	G	1.957e^-4	0.528	INTRON AstC-R1
3L	9513387	3L_9513387_SNP [dm3] 3L_9520287_SNP [dm6]	T	C	1.964e^-4	0.528	INTRON CG33700
3L	1897218	3L_1897218_SNP [dm3] 3L_1897218_SNP [dm6]	A	G	1.967e^-4	0.528	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	10349355	2L_10349355_INS [dm3] 2L_10349355_INS [dm6]	T	TAAAATACACT...	1.971e^-4	0.528	INTRON CG34367
2L	2173053	2L_2173053_SNP [dm3] 2L_2173053_SNP [dm6]	A	T	1.971e^-4	0.528	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11023826	2L_11023826_SNP [dm3] 2L_11023826_SNP [dm6]	G	T	1.975e^-4	0.528	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	14169380	2L_14169380_SNP [dm3] 2L_14169380_SNP [dm6]	T	C	1.989e^-4	0.528	INTRON CG43333
X	19069965	X_19069965_SNP [dm3] X_19175932_SNP [dm6]	T	A	1.989e^-4	0.528	DOWNSTREAM CG7556 INTERGENIC
2R	4572612	2R_4572612_SNP [dm3] 2R_8685107_SNP [dm6]	A	G	1.990e^-4	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6578436	2R_6578436_DEL [dm3] 2R_10690931_DEL [dm6]	CC	C	1.991e^-4	0.528	INTRON stan
3L	6824040	3L_6824040_SNP [dm3] 3L_6830940_SNP [dm6]	T	C	1.992e^-4	0.528	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7140956	3L_7140956_SNP [dm3] 3L_7147856_SNP [dm6]	A	T	1.995e^-4	0.528	UTR_5_PRIME corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18358439	2L_18358439_SNP [dm3] 2L_18358439_SNP [dm6]	T	G	2.003e^-4	0.528	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	11273394	X_11273394_DEL [dm3] X_11379361_DEL [dm6]	ATAAG	A	2.007e^-4	0.528	INTRON dlg1
2L	15976943	2L_15976943_INS [dm3] 2L_15976943_INS [dm6]	A	ATCGTGTTCGGTGTCTATTG...	2.007e^-4	0.528	INTERGENIC
2L	14521770	2L_14521770_SNP [dm3] 2L_14521770_SNP [dm6]	G	C	2.012e^-4	0.528	INTERGENIC
2L	14965948	2L_14965948_SNP [dm3] 2L_14965948_SNP [dm6]	C	G	2.012e^-4	0.528	INTRON CG42313
2L	3877621	2L_3877621_SNP [dm3] 2L_3877621_SNP [dm6]	T	C	2.014e^-4	0.528	INTRON capu
X	13931381	X_13931381_SNP [dm3] X_14037348_SNP [dm6]	C	T	2.016e^-4	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8763879	2R_8763879_SNP [dm3] 2R_12876374_SNP [dm6]	C	G	2.020e^-4	0.528	UTR_5_PRIME CG3814 UPSTREAM Aats-asp DOWNSTREAM Nmda1 INTRON CG3814 EXON CR43468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16265953	3L_16265953_SNP [dm3] 3L_16272853_SNP [dm6]	A	G	2.022e^-4	0.528	UPSTREAM CG13066 DOWNSTREAM CG13067 INTERGENIC
3R	12663958	3R_12663958_SNP [dm3] 3R_16838236_SNP [dm6]	A	T	2.023e^-4	0.528	INTRON iab-8	TF binding site mE1_TFBS_cad
3L	2994080	3L_2994080_SNP [dm3] 3L_2994080_SNP [dm6]	A	C	2.024e^-4	0.528	INTERGENIC
3L	2249554	3L_2249554_SNP [dm3] 3L_2249554_SNP [dm6]	G	A	2.026e^-4	0.528	DOWNSTREAM CG32301 INTRON CG32305	TF binding site mE1_TFBS_cad
X	22130809	X_22130809_SNP [dm3] X_22728973_SNP [dm6]	G	T	2.031e^-4	0.528	INTRON CR44997
2L	9421463	2L_9421463_SNP [dm3] 2L_9421463_SNP [dm6]	G	C	2.031e^-4	0.528	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16278769	3L_16278769_SNP [dm3] 3L_16285669_SNP [dm6]	A	G	2.033e^-4	0.528	UPSTREAM CG13047 INTERGENIC	TF binding site mE1_TFBS_cad
X	22123619	X_22123619_SNP [dm3] X_22721783_SNP [dm6]	C	T	2.041e^-4	0.528	INTRON CR44997
3L	4775866	3L_4775866_SNP [dm3] 3L_4775866_SNP [dm6]	A	T	2.044e^-4	0.528	INTRON RhoGEF64C
2R	15566985	2R_15566985_SNP [dm3] 2R_19679480_SNP [dm6]	T	C	2.044e^-4	0.528	INTERGENIC
2L	12550798	2L_12550798_SNP [dm3] 2L_12550798_SNP [dm6]	C	T	2.051e^-4	0.528	INTERGENIC
2L	21033767	2L_21033767_SNP [dm3] 2L_21033767_SNP [dm6]	G	C	2.053e^-4	0.528	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3300246	3R_3300246_INS [dm3] 3R_7474524_INS [dm6]	A	CTTGATAGAG	2.054e^-4	0.528	UPSTREAM CG1142 DOWNSTREAM snRNA:7SK INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3531017	X_3531017_SNP [dm3] X_3636984_SNP [dm6]	A	C	2.055e^-4	0.528	INTRON AstA-R1
2L	6057717	2L_6057717_SNP [dm3] 2L_6057717_SNP [dm6]	C	T	2.057e^-4	0.528	SYNONYMOUS_CODING CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22134961	X_22134961_SNP [dm3] X_22733125_SNP [dm6]	A	G	2.058e^-4	0.528	INTRON CR44997
2R	7034652	2R_7034652_SNP [dm3] 2R_11147147_SNP [dm6]	T	C	2.061e^-4	0.528	DOWNSTREAM CG12391 & 1 other INTRON CG13229
2L	14141794	2L_14141794_SNP [dm3] 2L_14141794_SNP [dm6]	A	T	2.063e^-4	0.528	INTRON CG17341
2L	18385627	2L_18385627_SNP [dm3] 2L_18385627_SNP [dm6]	G	A	2.065e^-4	0.528	INTRON Fas3
2L	12415087	2L_12415087_SNP [dm3] 2L_12415087_SNP [dm6]	A	G	2.067e^-4	0.528	INTRON vir-1
X	22124951	X_22124951_INS [dm3] X_22723115_INS [dm6]	A	AG	2.068e^-4	0.528	INTRON CR44997	transposable element FlyBase
2L	9436145	2L_9436145_SNP [dm3] 2L_9436145_SNP [dm6]	T	C	2.070e^-4	0.528	SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like DOWNSTREAM scat
2R	13858150	2R_13858150_SNP [dm3] 2R_17970645_SNP [dm6]	G	A	2.070e^-4	0.528	INTERGENIC
X	22197581	X_22197581_SNP [dm3] X_22795745_SNP [dm6]	A	G	2.072e^-4	0.528	INTRON CR44997
2R	10515815	2R_10515815_DEL [dm3] 2R_14628310_DEL [dm6]	AA	A	2.074e^-4	0.528	INTERGENIC
2R	18616090	2R_18616090_SNP [dm3] 2R_22728585_SNP [dm6]	G	A	2.075e^-4	0.528	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	22133303	X_22133303_SNP [dm3] X_22731467_SNP [dm6]	G	C	2.078e^-4	0.528	INTRON CR44997
2L	2864317	2L_2864317_SNP [dm3] 2L_2864317_SNP [dm6]	G	A	2.081e^-4	0.528	INTRON CG2991	TF binding site mE1_TFBS_HSA
3L	6793256	3L_6793256_SNP [dm3] 3L_6800156_SNP [dm6]	C	T	2.083e^-4	0.528	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13806823	X_13806823_SNP [dm3] X_13912790_SNP [dm6]	T	A	2.085e^-4	0.528	INTRON mamo
3L	16278776	3L_16278776_SNP [dm3] 3L_16285676_SNP [dm6]	A	G	2.088e^-4	0.528	UPSTREAM CG13047 INTERGENIC
2L	18441100	2L_18441100_SNP [dm3] 2L_18441100_SNP [dm6]	G	A	2.089e^-4	0.528	DOWNSTREAM RpS26 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	5012004	2R_5012004_SNP [dm3] 2R_9124499_SNP [dm6]	C	T	2.089e^-4	0.528	INTRON CG18659
X	22123047	X_22123047_SNP [dm3] X_22721211_SNP [dm6]	C	A	2.092e^-4	0.528	INTRON CR44997	transposable element FlyBase
2R	6335357	2R_6335357_SNP [dm3] 2R_10447852_SNP [dm6]	A	G	2.098e^-4	0.529	INTRON Galphao
2L	9654879	2L_9654879_SNP [dm3] 2L_9654879_SNP [dm6]	C	A	2.107e^-4	0.53	NON_SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6444628	2R_6444628_SNP [dm3] 2R_10557123_SNP [dm6]	G	T	2.110e^-4	0.53	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	2840033	3L_2840033_SNP [dm3] 3L_2840033_SNP [dm6]	G	T	2.115e^-4	0.53	INTRON CG43444
3L	16721929	3L_16721929_SNP [dm3] 3L_16728829_SNP [dm6]	A	T	2.119e^-4	0.53	NON_SYNONYMOUS_CODING Dbp73D UPSTREAM PGRP-SB1	TF binding site mE1_TFBS_sens
3L	4627343	3L_4627343_SNP [dm3] 3L_4627343_SNP [dm6]	T	G	2.123e^-4	0.53	UPSTREAM CR45438 INTRON Rpd3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18558276	3L_18558276_SNP [dm3] 3L_18565176_SNP [dm6]	G	A	2.126e^-4	0.53	INTRON AstC-R1
2L	1072326	2L_1072326_SNP [dm3] 2L_1072326_SNP [dm6]	G	A	2.130e^-4	0.53	INTRON S	TF binding site mE1_TFBS_sens
3L	11317009	3L_11317009_SNP [dm3] 3L_11323909_SNP [dm6]	A	C	2.131e^-4	0.53	UPSTREAM CR44721 DOWNSTREAM CR44723 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	480967	3R_480967_SNP [dm3] 3R_4655245_SNP [dm6]	T	A	2.135e^-4	0.53	UTR_5_PRIME spartin DOWNSTREAM Karybeta3 INTRON spartin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	22131503	X_22131503_DEL [dm3] X_22729667_DEL [dm6]	ATGCTACA	A	2.137e^-4	0.53	INTRON CR44997	transposable element FlyBase
X	2074931	X_2074931_DEL [dm3] X_2180898_DEL [dm6]	AA	A	2.138e^-4	0.53	UTR_3_PRIME Cyp4ae1 UPSTREAM pn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3673459	2L_3673459_DEL [dm3] 2L_3673459_DEL [dm6]	ACTTTAACGCA...	A	2.142e^-4	0.53	INTRON CG34340
2R	10509565	2R_10509565_SNP [dm3] 2R_14622060_SNP [dm6]	G	A	2.146e^-4	0.53	UPSTREAM snoRNA:Me28S-C3227a & 5 others DOWNSTREAM snoRNA:Me18S-C1366 INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10509572	2R_10509572_SNP [dm3] 2R_14622067_SNP [dm6]	T	A	2.146e^-4	0.53	UPSTREAM snoRNA:Me28S-C3227a & 5 others DOWNSTREAM snoRNA:Me18S-C1366 INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17442555	2R_17442555_SNP [dm3] 2R_21555050_SNP [dm6]	C	A	2.153e^-4	0.53	SPLICE_SITE_REGION Egfr SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_HSA
3R	16350416	3R_16350416_SNP [dm3] 3R_20524694_SNP [dm6]	A	T	2.153e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25798680	3R_25798680_SNP [dm3] 3R_29972958_SNP [dm6]	G	T	2.158e^-4	0.53	INTERGENIC
2R	7570972	2R_7570972_SNP [dm3] 2R_11683467_SNP [dm6]	G	A	2.160e^-4	0.53	DOWNSTREAM CG13196 INTRON Buffy
3L	16278845	3L_16278845_SNP [dm3] 3L_16285745_SNP [dm6]	A	C	2.164e^-4	0.53	UPSTREAM CG13047 INTERGENIC
3L	10548956	3L_10548956_SNP [dm3] 3L_10555856_SNP [dm6]	T	A	2.164e^-4	0.53	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	6375439	2L_6375439_SNP [dm3] 2L_6375439_SNP [dm6]	T	C	2.164e^-4	0.53	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1038527	2L_1038527_SNP [dm3] 2L_1038527_SNP [dm6]	A	G	2.172e^-4	0.53	UTR_3_PRIME CG4415 INTRON IA-2 & 1 other
X	22123373	X_22123373_SNP [dm3] X_22721537_SNP [dm6]	A	T	2.180e^-4	0.53	INTRON CR44997	transposable element FlyBase
3R	21647678	3R_21647678_SNP [dm3] 3R_25821956_SNP [dm6]	T	C	2.183e^-4	0.53	INTERGENIC
3R	24034517	3R_24034517_SNP [dm3] 3R_28208795_SNP [dm6]	G	T	2.185e^-4	0.53	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14164206	2L_14164206_SNP [dm3] 2L_14164206_SNP [dm6]	G	A	2.187e^-4	0.53	SYNONYMOUS_CODING CG43333 UPSTREAM CG43332
3L	12876761	3L_12876761_SNP [dm3] 3L_12883661_SNP [dm6]	G	A	2.189e^-4	0.53	INTERGENIC
2L	8889054	2L_8889054_SNP [dm3] 2L_8889054_SNP [dm6]	G	C	2.192e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	1038656	2L_1038656_SNP [dm3] 2L_1038656_SNP [dm6]	C	T	2.194e^-4	0.53	UTR_3_PRIME CG4415 DOWNSTREAM CG4415 INTRON IA-2
2R	15686639	2R_15686639_DEL [dm3] 2R_19799134_DEL [dm6]	GCTTC	G	2.197e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14658642	3R_14658642_SNP [dm3] 3R_18832920_SNP [dm6]	A	G	2.198e^-4	0.53	INTRON CG18208
3R	14657020	3R_14657020_SNP [dm3] 3R_18831298_SNP [dm6]	T	C	2.201e^-4	0.53	INTRON CG18208
2R	6558846	2R_6558846_SNP [dm3] 2R_10671341_SNP [dm6]	A	G	2.202e^-4	0.53	INTERGENIC
2L	7078782	2L_7078782_SNP [dm3] 2L_7078782_SNP [dm6]	T	G	2.214e^-4	0.53	DOWNSTREAM CR44611 INTRON Pvf2
3L	11636934	3L_11636934_SNP [dm3] 3L_11643834_SNP [dm6]	G	A	2.219e^-4	0.53	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
2R	12366924	2R_12366924_SNP [dm3] 2R_16479419_SNP [dm6]	T	C	2.221e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3988358	2L_3988358_SNP [dm3] 2L_3988358_SNP [dm6]	A	T	2.223e^-4	0.53	INTRON fred
2L	10091729	2L_10091729_SNP [dm3] 2L_10091729_SNP [dm6]	G	A	2.229e^-4	0.53	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1094608	3R_1094608_SNP [dm3] 3R_5268886_SNP [dm6]	A	G	2.232e^-4	0.53	UTR_3_PRIME Hph UPSTREAM CR45033 DOWNSTREAM Hph INTRON Hph
X	22131002	X_22131002_SNP [dm3] X_22729166_SNP [dm6]	A	T	2.232e^-4	0.53	INTRON CR44997
2L	8795438	2L_8795438_SNP [dm3] 2L_8795438_SNP [dm6]	C	T	2.233e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	14939862	3R_14939862_SNP [dm3] 3R_19114140_SNP [dm6]	T	C	2.240e^-4	0.53	INTRON CG6040	transposable element FlyBase
2R	8383660	2R_8383660_SNP [dm3] 2R_12496155_SNP [dm6]	A	T	2.240e^-4	0.53	SYNONYMOUS_CODING s-cup INTRON fdl
3L	10693321	3L_10693321_DEL [dm3] 3L_10700221_DEL [dm6]	AAT	A	2.240e^-4	0.53	INTERGENIC
3R	24644041	3R_24644041_SNP [dm3] 3R_28818319_SNP [dm6]	T	A	2.244e^-4	0.53	NON_SYNONYMOUS_CODING CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5532380	3L_5532380_SNP [dm3] 3L_5539280_SNP [dm6]	C	A	2.251e^-4	0.53	SYNONYMOUS_CODING CG10625 UTR_3_PRIME CG10625 INTRON CG10625	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9650119	2L_9650119_SNP [dm3] 2L_9650119_SNP [dm6]	T	C	2.252e^-4	0.53	SYNONYMOUS_CODING Apoltp
3L	16329407	3L_16329407_SNP [dm3] 3L_16336307_SNP [dm6]	G	A	2.253e^-4	0.53	INTERGENIC
2R	3158793	2R_3158793_SNP [dm3] 2R_7271288_SNP [dm6]	G	T	2.255e^-4	0.53	DOWNSTREAM Br140 INTERGENIC
2R	3144130	2R_3144130_SNP [dm3] 2R_7256625_SNP [dm6]	A	G	2.257e^-4	0.53	EXON CR45280
2R	18741611	2R_18741611_SNP [dm3] 2R_22854088_SNP [dm6]	G	T	2.259e^-4	0.53	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4642361	3L_4642361_DEL [dm3] 3L_4642361_DEL [dm6]	TT	T	2.261e^-4	0.53	UTR_3_PRIME axo INTRON axo
2L	9413742	2L_9413742_SNP [dm3] 2L_9413742_SNP [dm6]	G	C	2.274e^-4	0.53	INTRON Shawl
2L	6355398	2L_6355398_SNP [dm3] 2L_6355398_SNP [dm6]	A	C	2.275e^-4	0.53	SYNONYMOUS_CODING ppk14
3R	14955015	3R_14955015_SNP [dm3] 3R_19129293_SNP [dm6]	T	C	2.276e^-4	0.53	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2L	8869647	2L_8869647_INS [dm3] 2L_8869647_INS [dm6]	A	TTGTC	2.278e^-4	0.53	DOWNSTREAM CR44414 INTERGENIC
2L	8869650	2L_8869650_INS [dm3] 2L_8869650_INS [dm6]	A	AT	2.278e^-4	0.53	DOWNSTREAM CR44414 INTERGENIC
2L	12371265	2L_12371265_SNP [dm3] 2L_12371265_SNP [dm6]	T	A	2.280e^-4	0.53	INTRON bru-2
2R	17797675	2R_17797675_SNP [dm3] 2R_21910170_SNP [dm6]	T	C	2.291e^-4	0.53	INTRON Fili
2L	9252537	2L_9252537_SNP [dm3] 2L_9252537_SNP [dm6]	C	A	2.299e^-4	0.53	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1603752	3L_1603752_SNP [dm3] 3L_1603752_SNP [dm6]	T	A	2.300e^-4	0.53	NON_SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	6627595	3L_6627595_SNP [dm3] 3L_6634495_SNP [dm6]	G	A	2.301e^-4	0.53	SYNONYMOUS_CODING GluRIA
2L	2710983	2L_2710983_SNP [dm3] 2L_2710983_SNP [dm6]	C	T	2.304e^-4	0.53	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8401121	3R_8401121_SNP [dm3] 3R_12575399_SNP [dm6]	A	G	2.308e^-4	0.53	INTRON Octbeta2R
3L	2148439	3L_2148439_SNP [dm3] 3L_2148439_SNP [dm6]	G	T	2.311e^-4	0.53	INTRON zormin
2L	6325059	2L_6325059_SNP [dm3] 2L_6325059_SNP [dm6]	G	T	2.323e^-4	0.53	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	501606	3R_501606_SNP [dm3] 3R_4675884_SNP [dm6]	C	A	2.323e^-4	0.53	INTRON CG43427	TF binding site mE1_TFBS_inv
3R	18834669	3R_18834669_DEL [dm3] 3R_23008947_DEL [dm6]	TGT	T	2.324e^-4	0.53	INTRON CG34375
2R	9474470	2R_9474470_INS [dm3] 2R_13586965_INS [dm6]	T	TATGT	2.326e^-4	0.53	INTRON CG6191 & 1 other
3R	24034493	3R_24034493_SNP [dm3] 3R_28208771_SNP [dm6]	C	T	2.330e^-4	0.53	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	2679474	2L_2679474_SNP [dm3] 2L_2679474_SNP [dm6]	G	T	2.330e^-4	0.53	INTRON CG31690
2R	19822064	2R_19822064_SNP [dm3] 2R_23934541_SNP [dm6]	C	A	2.335e^-4	0.53	UPSTREAM Ca-P60A INTRON Ca-P60A
2R	12361695	2R_12361695_SNP [dm3] 2R_16474190_SNP [dm6]	A	G	2.335e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6151339	X_6151339_SNP [dm3] X_6257306_SNP [dm6]	C	G	2.338e^-4	0.53	UTR_3_PRIME Spx DOWNSTREAM schlank
2L	14114574	2L_14114574_SNP [dm3] 2L_14114574_SNP [dm6]	T	A	2.338e^-4	0.53	INTERGENIC
X	22124348	X_22124348_SNP [dm3] X_22722512_SNP [dm6]	G	T	2.340e^-4	0.53	INTRON CR44997	transposable element FlyBase
2R	10500882	2R_10500882_SNP [dm3] 2R_14613377_SNP [dm6]	C	T	2.347e^-4	0.53	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1033590	2L_1033590_SNP [dm3] 2L_1033590_SNP [dm6]	C	A	2.349e^-4	0.53	INTRON IA-2
2L	1033627	2L_1033627_DEL [dm3] 2L_1033627_DEL [dm6]	AT	A	2.349e^-4	0.53	INTRON IA-2
3R	13045826	3R_13045826_SNP [dm3] 3R_17220104_SNP [dm6]	T	C	2.350e^-4	0.53	UPSTREAM CG31262 INTRON CG31262
2L	5769409	2L_5769409_SNP [dm3] 2L_5769409_SNP [dm6]	C	G	2.351e^-4	0.53	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3R	18503411	3R_18503411_SNP [dm3] 3R_22677689_SNP [dm6]	T	C	2.351e^-4	0.53	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13010353	3L_13010353_SNP [dm3] 3L_13017253_SNP [dm6]	G	A	2.352e^-4	0.53	SYNONYMOUS_CODING mRpL20 DOWNSTREAM CG11267	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15005749	2L_15005749_SNP [dm3] 2L_15005749_SNP [dm6]	G	A	2.353e^-4	0.53	UTR_5_PRIME dyn-p25 DOWNSTREAM l_2_35Be	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19818958	2R_19818958_SNP [dm3] 2R_23931435_SNP [dm6]	C	T	2.354e^-4	0.53	NON_SYNONYMOUS_CODING Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11507215	3R_11507215_SNP [dm3] 3R_15681493_SNP [dm6]	T	G	2.359e^-4	0.53	INTRON pxb
3R	24678060	3R_24678060_SNP [dm3] 3R_28852338_SNP [dm6]	A	C	2.359e^-4	0.53	INTRON spg
X	15543223	X_15543223_SNP [dm3] X_15649190_SNP [dm6]	C	T	2.361e^-4	0.53	INTERGENIC
3R	26188973	3R_26188973_SNP [dm3] 3R_30363251_SNP [dm6]	T	A	2.367e^-4	0.53	UTR_3_PRIME hdc
3L	6810470	3L_6810470_SNP [dm3] 3L_6817370_SNP [dm6]	G	A	2.371e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16278821	3L_16278821_SNP [dm3] 3L_16285721_SNP [dm6]	T	C	2.375e^-4	0.53	UPSTREAM CG13047 INTERGENIC
2L	5502158	2L_5502158_SNP [dm3] 2L_5502158_SNP [dm6]	A	G	2.376e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13691762	X_13691762_SNP [dm3] X_13797729_SNP [dm6]	A	T	2.376e^-4	0.53	UPSTREAM CG10996 INTRON inaE
3R	12349872	3R_12349872_SNP [dm3] 3R_16524150_SNP [dm6]	C	A	2.379e^-4	0.53	INTRON CG42342	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2L	8169693	2L_8169693_SNP [dm3] 2L_8169693_SNP [dm6]	G	A	2.379e^-4	0.53	INTRON Piezo
3R	3833328	3R_3833328_INS [dm3] 3R_8007606_INS [dm6]	T	TT	2.385e^-4	0.53	DOWNSTREAM CG11052 INTRON CG2767
3R	24769936	3R_24769936_DEL [dm3] 3R_28944214_DEL [dm6]	TT	T	2.385e^-4	0.53	INTRON CG14521
2R	7031512	2R_7031512_SNP [dm3] 2R_11144007_SNP [dm6]	A	T	2.388e^-4	0.53	UPSTREAM CG13229 INTRON CG13229
2L	8368984	2L_8368984_SNP [dm3] 2L_8368984_SNP [dm6]	G	C	2.390e^-4	0.53	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
X	22138996	X_22138996_SNP [dm3] X_22737160_SNP [dm6]	A	C	2.400e^-4	0.53	INTRON CR44997
2R	10364374	2R_10364374_SNP [dm3] 2R_14476869_SNP [dm6]	G	A	2.400e^-4	0.53	INTRON CR44462	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18878072	X_18878072_SNP [dm3] X_18984039_SNP [dm6]	A	T	2.400e^-4	0.53	INTRON CG43759
3R	21703537	3R_21703537_SNP [dm3] 3R_25877815_SNP [dm6]	G	A	2.401e^-4	0.53	INTRON Tsp96F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16325122	3L_16325122_SNP [dm3] 3L_16332022_SNP [dm6]	A	G	2.403e^-4	0.53	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
2L	16935784	2L_16935784_SNP [dm3] 2L_16935784_SNP [dm6]	C	A	2.404e^-4	0.53	INTERGENIC
3L	16330483	3L_16330483_SNP [dm3] 3L_16337383_SNP [dm6]	A	G	2.418e^-4	0.53	INTERGENIC
3R	13900815	3R_13900815_SNP [dm3] 3R_18075093_SNP [dm6]	C	T	2.418e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22124765	X_22124765_SNP [dm3] X_22722929_SNP [dm6]	A	G	2.424e^-4	0.53	INTRON CR44997	transposable element FlyBase
X	2815768	X_2815768_SNP [dm3] X_2921735_SNP [dm6]	T	C	2.425e^-4	0.53	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	22124619	X_22124619_SNP [dm3] X_22722783_SNP [dm6]	A	G	2.426e^-4	0.53	INTRON CR44997	transposable element FlyBase
2L	347495	2L_347495_SNP [dm3] 2L_347495_SNP [dm6]	A	T	2.426e^-4	0.53	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9650936	2L_9650936_SNP [dm3] 2L_9650936_SNP [dm6]	G	C	2.428e^-4	0.53	NON_SYNONYMOUS_CODING Apoltp
X	22120976	X_22120976_SNP [dm3] X_22719140_SNP [dm6]	A	G	2.430e^-4	0.53	INTRON CR44997
2L	27181	2L_27181_SNP [dm3] 2L_27181_SNP [dm6]	A	G	2.432e^-4	0.53	SYNONYMOUS_CODING Cda5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3L	21760496	3L_21760496_SNP [dm3] 3L_21767396_SNP [dm6]	C	T	2.433e^-4	0.53	UPSTREAM CG42689 INTRON Syn1
2R	18326946	2R_18326946_SNP [dm3] 2R_22439441_SNP [dm6]	C	T	2.437e^-4	0.53	INTERGENIC
2R	8307806	2R_8307806_SNP [dm3] 2R_12420301_SNP [dm6]	C	G	2.441e^-4	0.53	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
3R	24659893	3R_24659893_SNP [dm3] 3R_28834171_SNP [dm6]	T	A	2.444e^-4	0.53	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	14212917	2L_14212917_SNP [dm3] 2L_14212917_SNP [dm6]	C	T	2.448e^-4	0.53	INTRON Dyrk2
3L	2248969	3L_2248969_SNP [dm3] 3L_2248969_SNP [dm6]	C	T	2.452e^-4	0.53	SPLICE_SITE_REGION CG32305 DOWNSTREAM CG32301 INTRON CG32305
2R	7324031	2R_7324031_SNP [dm3] 2R_11436526_SNP [dm6]	T	A	2.465e^-4	0.53	INTRON CG7777
2L	3152955	2L_3152955_SNP [dm3] 2L_3152955_SNP [dm6]	A	T	2.468e^-4	0.53	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
3L	9296006	3L_9296006_SNP [dm3] 3L_9302906_SNP [dm6]	T	C	2.469e^-4	0.53	INTERGENIC
2L	14024315	2L_14024315_SNP [dm3] 2L_14024315_SNP [dm6]	A	T	2.469e^-4	0.53	UPSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21037530	2L_21037530_SNP [dm3] 2L_21037530_SNP [dm6]	T	A	2.472e^-4	0.53	INTRON CG42238	TF binding site BDTNP1_TFBS_hb
3L	16278765	3L_16278765_SNP [dm3] 3L_16285665_SNP [dm6]	A	G	2.481e^-4	0.53	UPSTREAM CG13047 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11636965	3L_11636965_SNP [dm3] 3L_11643865_SNP [dm6]	T	C	2.483e^-4	0.53	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
3L	8663052	3L_8663052_SNP [dm3] 3L_8669952_SNP [dm6]	C	T	2.485e^-4	0.53	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11049500	2R_11049500_SNP [dm3] 2R_15161995_SNP [dm6]	G	A	2.488e^-4	0.53	INTRON igl
2L	7711312	2L_7711312_SNP [dm3] 2L_7711312_SNP [dm6]	G	A	2.488e^-4	0.53	UPSTREAM CR44990 & 2 others DOWNSTREAM Tep3 INTRON Ntl
2L	9411899	2L_9411899_SNP [dm3] 2L_9411899_SNP [dm6]	G	T	2.489e^-4	0.53	INTRON Shawl
3R	12038838	3R_12038838_SNP [dm3] 3R_16213116_SNP [dm6]	A	T	2.491e^-4	0.53	UPSTREAM CR45642 INTERGENIC
2R	10236415	2R_10236415_SNP [dm3] 2R_14348910_SNP [dm6]	C	T	2.491e^-4	0.53	INTRON Shroom
X	22130822	X_22130822_SNP [dm3] X_22728986_SNP [dm6]	T	C	2.500e^-4	0.53	INTRON CR44997
3L	5659718	3L_5659718_SNP [dm3] 3L_5666618_SNP [dm6]	T	C	2.500e^-4	0.53	INTRON sif
2L	14373288	2L_14373288_SNP [dm3] 2L_14373288_SNP [dm6]	G	A	2.505e^-4	0.53	INTERGENIC
2L	10623602	2L_10623602_SNP [dm3] 2L_10623602_SNP [dm6]	A	G	2.510e^-4	0.53	INTRON Trim9
2L	9398303	2L_9398303_SNP [dm3] 2L_9398303_SNP [dm6]	T	A	2.511e^-4	0.53	UPSTREAM CG4438 INTRON Shawl
3R	19813100	3R_19813100_SNP [dm3] 3R_23987378_SNP [dm6]	C	G	2.515e^-4	0.53	START_GAINED CG5902 UTR_5_PRIME CG5902 UPSTREAM CG13603	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16330480	3L_16330480_SNP [dm3] 3L_16337380_SNP [dm6]	A	T	2.515e^-4	0.53	INTERGENIC
3R	21354471	3R_21354471_SNP [dm3] 3R_25528749_SNP [dm6]	C	T	2.518e^-4	0.53	INTRON msi
2L	1671705	2L_1671705_SNP [dm3] 2L_1671705_SNP [dm6]	A	G	2.522e^-4	0.53	INTRON chinmo
3L	11636917	3L_11636917_SNP [dm3] 3L_11643817_SNP [dm6]	T	C	2.525e^-4	0.53	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
2R	6507268	2R_6507268_SNP [dm3] 2R_10619763_SNP [dm6]	C	G	2.525e^-4	0.53	INTRON CG11883
3L	5569072	3L_5569072_SNP [dm3] 3L_5575972_SNP [dm6]	A	C	2.532e^-4	0.53	UPSTREAM Msr-110 INTRON Msr-110
X	18878065	X_18878065_SNP [dm3] X_18984032_SNP [dm6]	C	T	2.533e^-4	0.53	INTRON CG43759
2L	6594116	2L_6594116_SNP [dm3] 2L_6594116_SNP [dm6]	C	T	2.540e^-4	0.53	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
3L	11636786	3L_11636786_SNP [dm3] 3L_11643686_SNP [dm6]	T	A	2.540e^-4	0.53	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
X	22145950	X_22145950_SNP [dm3] X_22744114_SNP [dm6]	C	A	2.540e^-4	0.53	INTRON CR44997	transposable element FlyBase
2L	1391647	2L_1391647_SNP [dm3] 2L_1391647_SNP [dm6]	G	A	2.547e^-4	0.53	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
2L	3437071	2L_3437071_SNP [dm3] 2L_3437071_SNP [dm6]	A	C	2.547e^-4	0.53	INTERGENIC
X	9379041	X_9379041_INS [dm3] X_9485008_INS [dm6]	A	AA	2.549e^-4	0.53	INTRON mgl	TF binding site BDTNP1_TFBS_dl
X	13150476	X_13150476_SNP [dm3] X_13256443_SNP [dm6]	A	G	2.552e^-4	0.53	DOWNSTREAM CG15742 INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10504877	2R_10504877_SNP [dm3] 2R_14617372_SNP [dm6]	C	A	2.553e^-4	0.53	INTRON Su_var_2-HP2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21715910	3R_21715910_SNP [dm3] 3R_25890188_SNP [dm6]	G	T	2.554e^-4	0.53	SYNONYMOUS_CODING Lnk
2L	19845356	2L_19845356_SNP [dm3] 2L_19845356_SNP [dm6]	G	T	2.556e^-4	0.53	INTRON sick
3R	20419946	3R_20419946_SNP [dm3] 3R_24594224_SNP [dm6]	A	T	2.558e^-4	0.53	INTRON mld
2L	18358403	2L_18358403_SNP [dm3] 2L_18358403_SNP [dm6]	C	T	2.559e^-4	0.53	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	12535069	2L_12535069_SNP [dm3] 2L_12535069_SNP [dm6]	G	T	2.559e^-4	0.53	INTRON bun
2R	8383668	2R_8383668_SNP [dm3] 2R_12496163_SNP [dm6]	A	G	2.560e^-4	0.53	NON_SYNONYMOUS_CODING s-cup INTRON fdl
3L	6793188	3L_6793188_SNP [dm3] 3L_6800088_SNP [dm6]	C	A	2.563e^-4	0.53	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	12366869	2R_12366869_SNP [dm3] 2R_16479364_SNP [dm6]	C	A	2.564e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27467307	3R_27467307_SNP [dm3] 3R_31641585_SNP [dm6]	G	A	2.569e^-4	0.53	INTRON kek6
2R	20055848	2R_20055848_SNP [dm3] 2R_24168325_SNP [dm6]	C	T	2.574e^-4	0.53	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6830711	3L_6830711_SNP [dm3] 3L_6837611_SNP [dm6]	G	A	2.575e^-4	0.53	INTERGENIC
X	10112285	X_10112285_SNP [dm3] X_10218252_SNP [dm6]	C	A	2.577e^-4	0.53	SYNONYMOUS_CODING CG15308 DOWNSTREAM l_1_G0230 EXON CR45629
2L	9430078	2L_9430078_SNP [dm3] 2L_9430078_SNP [dm6]	G	A	2.581e^-4	0.53	NON_SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14657017	3R_14657017_SNP [dm3] 3R_18831295_SNP [dm6]	A	G	2.585e^-4	0.53	INTRON CG18208
3L	2148482	3L_2148482_DEL [dm3] 3L_2148482_DEL [dm6]	AG	A	2.589e^-4	0.53	INTRON zormin
X	15479915	X_15479915_SNP [dm3] X_15585882_SNP [dm6]	C	T	2.591e^-4	0.53	UTR_3_PRIME CG9220 DOWNSTREAM CG8097	TF binding site mE1_TFBS_cad
2L	20835488	2L_20835488_SNP [dm3] 2L_20835488_SNP [dm6]	T	A	2.593e^-4	0.53	NON_SYNONYMOUS_CODING Oseg5	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5432884	2L_5432884_SNP [dm3] 2L_5432884_SNP [dm6]	C	A	2.594e^-4	0.53	DOWNSTREAM CR43713 & 1 other EXON CR43714
2L	9650128	2L_9650128_SNP [dm3] 2L_9650128_SNP [dm6]	A	G	2.599e^-4	0.53	SYNONYMOUS_CODING Apoltp
3R	721249	3R_721249_SNP [dm3] 3R_4895527_SNP [dm6]	C	T	2.603e^-4	0.53	UPSTREAM CR45580 INTERGENIC
2L	9934460	2L_9934460_SNP [dm3] 2L_9934460_SNP [dm6]	C	T	2.606e^-4	0.53	DOWNSTREAM CG31712 INTERGENIC
X	22134311	X_22134311_SNP [dm3] X_22732475_SNP [dm6]	T	A	2.607e^-4	0.53	INTRON CR44997
3R	25184576	3R_25184576_SNP [dm3] 3R_29358854_SNP [dm6]	C	G	2.609e^-4	0.53	INTERGENIC
2L	14890853	2L_14890853_SNP [dm3] 2L_14890853_SNP [dm6]	G	A	2.614e^-4	0.53	INTERGENIC
3R	19895654	3R_19895654_SNP [dm3] 3R_24069932_SNP [dm6]	T	A	2.621e^-4	0.53	INTRON 4EHP
2R	11875271	2R_11875271_SNP [dm3] 2R_15987766_SNP [dm6]	G	A	2.626e^-4	0.53	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	7544700	2R_7544700_SNP [dm3] 2R_11657195_SNP [dm6]	C	T	2.628e^-4	0.53	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17315020	2R_17315020_SNP [dm3] 2R_21427515_SNP [dm6]	G	C	2.630e^-4	0.53	INTRON Sdc
2L	12498659	2L_12498659_SNP [dm3] 2L_12498659_SNP [dm6]	A	G	2.635e^-4	0.53	SYNONYMOUS_CODING bun INTRON bun
3R	1096733	3R_1096733_SNP [dm3] 3R_5271011_SNP [dm6]	G	A	2.635e^-4	0.53	UTR_3_PRIME mtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5238783	3L_5238783_SNP [dm3] 3L_5245683_SNP [dm6]	A	G	2.635e^-4	0.53	INTRON shep
2L	13638	2L_13638_SNP [dm3] 2L_13638_SNP [dm6]	G	A	2.636e^-4	0.53	INTRON l_2_gl
2R	10674705	2R_10674705_SNP [dm3] 2R_14787200_SNP [dm6]	T	G	2.643e^-4	0.53	INTRON kn
X	6627450	X_6627450_SNP [dm3] X_6733417_SNP [dm6]	C	T	2.644e^-4	0.53	INTRON CG3168 & 1 other
2R	14139937	2R_14139937_SNP [dm3] 2R_18252432_SNP [dm6]	A	C	2.650e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14181430	2L_14181430_SNP [dm3] 2L_14181430_SNP [dm6]	A	T	2.650e^-4	0.53	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25854134	3R_25854134_SNP [dm3] 3R_30028412_SNP [dm6]	T	A	2.650e^-4	0.53	INTRON Axn
X	7870975	X_7870975_SNP [dm3] X_7976942_SNP [dm6]	A	G	2.654e^-4	0.53	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7646289	2L_7646289_SNP [dm3] 2L_7646289_SNP [dm6]	G	T	2.656e^-4	0.53	DOWNSTREAM Slob INTRON Slob
3L	785078	3L_785078_SNP [dm3] 3L_785078_SNP [dm6]	A	T	2.656e^-4	0.53	INTERGENIC
X	16690679	X_16690679_SNP [dm3] X_16796646_SNP [dm6]	T	A	2.658e^-4	0.53	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
2L	15941267	2L_15941267_SNP [dm3] 2L_15941267_SNP [dm6]	T	A	2.662e^-4	0.53	UPSTREAM CG12448 INTRON beat-Ib
X	22126389	X_22126389_SNP [dm3] X_22724553_SNP [dm6]	C	A	2.663e^-4	0.53	INTRON CR44997	transposable element FlyBase
3L	16491239	3L_16491239_SNP [dm3] 3L_16498139_SNP [dm6]	T	C	2.666e^-4	0.53	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8426496	2L_8426496_SNP [dm3] 2L_8426496_SNP [dm6]	T	C	2.668e^-4	0.53	UPSTREAM Akap200 INTRON Akap200
2R	6357346	2R_6357346_SNP [dm3] 2R_10469841_SNP [dm6]	G	A	2.669e^-4	0.53	SYNONYMOUS_CODING whd DOWNSTREAM CG11777
3L	2902526	3L_2902526_SNP [dm3] 3L_2902526_SNP [dm6]	A	G	2.674e^-4	0.53	INTRON Shab
2R	7324213	2R_7324213_SNP [dm3] 2R_11436708_SNP [dm6]	T	A	2.676e^-4	0.53	INTRON CG7777
X	22129344	X_22129344_SNP [dm3] X_22727508_SNP [dm6]	A	T	2.679e^-4	0.53	INTRON CR44997
2L	14890861	2L_14890861_SNP [dm3] 2L_14890861_SNP [dm6]	A	G	2.681e^-4	0.53	INTERGENIC
3R	15526764	3R_15526764_SNP [dm3] 3R_19701042_SNP [dm6]	A	T	2.689e^-4	0.53	INTERGENIC
2L	12275	2L_12275_SNP [dm3] 2L_12275_SNP [dm6]	G	C	2.690e^-4	0.53	INTRON l_2_gl
3L	15665947	3L_15665947_SNP [dm3] 3L_15672847_SNP [dm6]	T	A	2.690e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4309511	2L_4309511_SNP [dm3] 2L_4309511_SNP [dm6]	C	T	2.692e^-4	0.53	INTRON tutl
3L	2962642	3L_2962642_SNP [dm3] 3L_2962642_SNP [dm6]	T	C	2.695e^-4	0.53	SYNONYMOUS_CODING Or63a UTR_3_PRIME Or63a
3L	10693360	3L_10693360_DEL [dm3] 3L_10700260_DEL [dm6]	AT	A	2.700e^-4	0.531	INTERGENIC
3R	25854395	3R_25854395_DEL [dm3] 3R_30028673_DEL [dm6]	GCATAAAATAGTTTATGAAA...	G	2.704e^-4	0.531	INTRON Axn	TF binding site mE1_TFBS_chinmo
2L	9654862	2L_9654862_SNP [dm3] 2L_9654862_SNP [dm6]	C	T	2.706e^-4	0.531	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6044607	2L_6044607_SNP [dm3] 2L_6044607_SNP [dm6]	C	T	2.708e^-4	0.531	NON_SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21635774	3R_21635774_SNP [dm3] 3R_25810052_SNP [dm6]	T	C	2.710e^-4	0.531	INTERGENIC
3R	18168732	3R_18168732_SNP [dm3] 3R_22343010_SNP [dm6]	G	A	2.713e^-4	0.531	UPSTREAM CG5386 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9427154	2L_9427154_SNP [dm3] 2L_9427154_SNP [dm6]	G	A	2.730e^-4	0.531	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9427486	2L_9427486_SNP [dm3] 2L_9427486_SNP [dm6]	C	T	2.730e^-4	0.531	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2L	9428810	2L_9428810_SNP [dm3] 2L_9428810_SNP [dm6]	T	G	2.730e^-4	0.531	UTR_3_PRIME FucTB DOWNSTREAM Fbp2 & 1 other
2L	9430958	2L_9430958_SNP [dm3] 2L_9430958_SNP [dm6]	A	T	2.730e^-4	0.531	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9430549	2L_9430549_SNP [dm3] 2L_9430549_SNP [dm6]	A	C	2.734e^-4	0.531	UPSTREAM FucTB & 1 other INTRON FucTB
2R	7144111	2R_7144111_SNP [dm3] 2R_11256606_SNP [dm6]	G	A	2.739e^-4	0.531	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Eb
3L	8582486	3L_8582486_SNP [dm3] 3L_8589386_SNP [dm6]	G	A	2.740e^-4	0.531	UPSTREAM CG43078 INTRON CG43078
2L	2562355	2L_2562355_SNP [dm3] 2L_2562355_SNP [dm6]	T	G	2.748e^-4	0.531	DOWNSTREAM Cyp309a1 INTERGENIC
2L	6594040	2L_6594040_DEL [dm3] 2L_6594040_DEL [dm6]	AATTTT	A	2.751e^-4	0.531	INTRON CG11319
3R	24787989	3R_24787989_SNP [dm3] 3R_28962267_SNP [dm6]	C	T	2.754e^-4	0.531	INTRON CG14521
3L	20375880	3L_20375880_SNP [dm3] 3L_20382780_SNP [dm6]	T	C	2.757e^-4	0.531	SYNONYMOUS_CODING CG5498 DOWNSTREAM RhoBTB
3L	16335959	3L_16335959_SNP [dm3] 3L_16342859_SNP [dm6]	C	G	2.757e^-4	0.531	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
2L	256339	2L_256339_SNP [dm3] 2L_256339_SNP [dm6]	G	A	2.763e^-4	0.531	INTRON CG3645
2L	18412960	2L_18412960_SNP [dm3] 2L_18412960_SNP [dm6]	C	G	2.766e^-4	0.531	INTERGENIC
X	6504918	X_6504918_SNP [dm3] X_6610885_SNP [dm6]	G	C	2.766e^-4	0.531	INTRON pigs
2R	11600079	2R_11600079_SNP [dm3] 2R_15712574_SNP [dm6]	C	T	2.772e^-4	0.531	SYNONYMOUS_CODING CG30083
2L	4728758	2L_4728758_SNP [dm3] 2L_4728758_SNP [dm6]	G	C	2.772e^-4	0.531	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2R	11999221	2R_11999221_SNP [dm3] 2R_16111716_SNP [dm6]	C	T	2.775e^-4	0.531	INTRON Asph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	22122763	X_22122763_SNP [dm3] X_22720927_SNP [dm6]	C	T	2.778e^-4	0.531	INTRON CR44997	transposable element FlyBase
2L	17608523	2L_17608523_SNP [dm3] 2L_17608523_SNP [dm6]	G	T	2.784e^-4	0.531	INTERGENIC
X	22261509	X_22261509_SNP [dm3] X_22859673_SNP [dm6]	C	T	2.784e^-4	0.531	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18878073	X_18878073_SNP [dm3] X_18984040_SNP [dm6]	T	G	2.785e^-4	0.531	INTRON CG43759
2R	2568398	2R_2568398_SNP [dm3] 2R_6680893_SNP [dm6]	T	A	2.787e^-4	0.531	UPSTREAM Tdc1 & 1 other INTRON CG9422
2L	7646312	2L_7646312_SNP [dm3] 2L_7646312_SNP [dm6]	A	C	2.788e^-4	0.531	DOWNSTREAM Slob INTRON Slob
2R	12454956	2R_12454956_SNP [dm3] 2R_16567451_SNP [dm6]	A	G	2.791e^-4	0.531	INTRON CG4945
2L	4728795	2L_4728795_SNP [dm3] 2L_4728795_SNP [dm6]	G	C	2.792e^-4	0.531	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	8926621	3L_8926621_SNP [dm3] 3L_8933521_SNP [dm6]	G	T	2.795e^-4	0.531	INTRON CG43783
3R	17321252	3R_17321252_SNP [dm3] 3R_21495530_SNP [dm6]	G	A	2.795e^-4	0.531	INTERGENIC
3L	5855282	3L_5855282_SNP [dm3] 3L_5862182_SNP [dm6]	C	T	2.797e^-4	0.531	INTERGENIC
2R	6694260	2R_6694260_SNP [dm3] 2R_10806755_SNP [dm6]	T	C	2.799e^-4	0.531	UPSTREAM wde INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2073495	X_2073495_SNP [dm3] X_2179462_SNP [dm6]	G	A	2.810e^-4	0.532	SYNONYMOUS_CODING Cyp4ae1 DOWNSTREAM Cyp4d2 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	1656240	X_1656240_SNP [dm3] X_1762207_SNP [dm6]	T	C	2.817e^-4	0.532	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11578394	3L_11578394_SNP [dm3] 3L_11585294_SNP [dm6]	A	G	2.819e^-4	0.532	SYNONYMOUS_CODING rt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4385630	3L_4385630_SNP [dm3] 3L_4385630_SNP [dm6]	A	T	2.822e^-4	0.532	INTRON slow
3R	15528170	3R_15528170_SNP [dm3] 3R_19702448_SNP [dm6]	T	G	2.822e^-4	0.532	INTERGENIC
3R	13042939	3R_13042939_SNP [dm3] 3R_17217217_SNP [dm6]	A	G	2.824e^-4	0.532	UTR_3_PRIME CG31262
3L	10666653	3L_10666653_SNP [dm3] 3L_10673553_SNP [dm6]	G	A	2.833e^-4	0.533	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4571975	2L_4571975_SNP [dm3] 2L_4571975_SNP [dm6]	A	C	2.834e^-4	0.533	INTRON dp
2L	9428316	2L_9428316_SNP [dm3] 2L_9428316_SNP [dm6]	A	C	2.840e^-4	0.533	SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
3R	22922325	3R_22922325_SNP [dm3] 3R_27096603_SNP [dm6]	G	A	2.841e^-4	0.533	SYNONYMOUS_CODING eater DOWNSTREAM CG14259	TF binding site mE1_TFBS_sens
2L	8869574	2L_8869574_DEL [dm3] 2L_8869574_DEL [dm6]	ATCAAAATGC	A	2.848e^-4	0.534	DOWNSTREAM CR44414 INTERGENIC

By genomic position
Variant impact
Gene name

mn_Resp_EthylAcetate phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results