DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.555e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.06779

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.8807	0.0528
In_3R_P	5.3247	0.0698

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1881 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6027938	3L_6027938_SNP [dm3] 3L_6034838_SNP [dm6]	C	G	9.467e^-7	0.79	UPSTREAM yip7 & 1 other INTERGENIC
3L	6027850	3L_6027850_SNP [dm3] 3L_6034750_SNP [dm6]	T	A	1.314e^-6	0.79	UPSTREAM yip7 & 1 other INTERGENIC
3R	19170314	3R_19170314_SNP [dm3] 3R_23344592_SNP [dm6]	G	C	2.265e^-6	0.79	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11701982	2L_11701982_SNP [dm3] 2L_11701982_SNP [dm6]	A	G	2.381e^-6	0.79	INTERGENIC
3L	7826685	3L_7826685_DEL [dm3] 3L_7833585_DEL [dm6]	AG	A	2.474e^-6	0.79	UPSTREAM Pdp1 INTRON Pdp1
3L	7826682	3L_7826682_SNP [dm3] 3L_7833582_SNP [dm6]	T	A	2.749e^-6	0.79	UPSTREAM Pdp1 INTRON Pdp1
2R	19547275	2R_19547275_SNP [dm3] 2R_23659752_SNP [dm6]	A	G	3.017e^-6	0.79	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7826634	3L_7826634_SNP [dm3] 3L_7833534_SNP [dm6]	A	G	3.445e^-6	0.79	UPSTREAM Pdp1 INTRON Pdp1
2R	12137514	2R_12137514_SNP [dm3] 2R_16250009_SNP [dm6]	A	T	3.953e^-6	0.79	UPSTREAM CngA INTRON CngA
3L	13734319	3L_13734319_SNP [dm3] 3L_13741219_SNP [dm6]	T	G	4.478e^-6	0.79	INTRON bru-3
2L	6983506	2L_6983506_SNP [dm3] 2L_6983506_SNP [dm6]	T	G	4.791e^-6	0.79	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12672082	2L_12672082_SNP [dm3] 2L_12672082_SNP [dm6]	A	G	5.206e^-6	0.79	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	8027333	2L_8027333_SNP [dm3] 2L_8027333_SNP [dm6]	G	A	5.473e^-6	0.79	SYNONYMOUS_CODING CG7367 DOWNSTREAM Tg
3R	20788785	3R_20788785_SNP [dm3] 3R_24963063_SNP [dm6]	T	G	6.672e^-6	0.853	INTERGENIC
3R	19170316	3R_19170316_SNP [dm3] 3R_23344594_SNP [dm6]	A	T	8.606e^-6	0.853	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19546113	2R_19546113_SNP [dm3] 2R_23658590_SNP [dm6]	A	G	9.555e^-6	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19547846	2R_19547846_SNP [dm3] 2R_23660323_SNP [dm6]	C	T	9.776e^-6	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8094057	3R_8094057_SNP [dm3] 3R_12268335_SNP [dm6]	A	G	1.005e^-5	0.853	UPSTREAM CR44039 INTRON svp
2R	19548250	2R_19548250_SNP [dm3] 2R_23660727_SNP [dm6]	T	C	1.066e^-5	0.853	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19546318	2R_19546318_SNP [dm3] 2R_23658795_SNP [dm6]	T	C	1.088e^-5	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546440	2R_19546440_INS [dm3] 2R_23658917_INS [dm6]	A	AGTTGAG	1.126e^-5	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546308	2R_19546308_SNP [dm3] 2R_23658785_SNP [dm6]	T	C	1.133e^-5	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546444	2R_19546444_INS [dm3] 2R_23658921_INS [dm6]	A	AGTACTTTCCATGTGAGCCC...	1.174e^-5	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26792560	3R_26792560_SNP [dm3] 3R_30966838_SNP [dm6]	C	G	1.199e^-5	0.853	INTERGENIC
2L	9654961	2L_9654961_SNP [dm3] 2L_9654961_SNP [dm6]	G	T	1.240e^-5	0.853	SYNONYMOUS_CODING Apoltp
2R	19546203	2R_19546203_SNP [dm3] 2R_23658680_SNP [dm6]	T	A	1.324e^-5	0.853	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15466440	2R_15466440_SNP [dm3] 2R_19578935_SNP [dm6]	A	C	1.419e^-5	0.853	INTRON sm
2R	15466505	2R_15466505_SNP [dm3] 2R_19579000_SNP [dm6]	G	C	1.419e^-5	0.853	INTRON sm
2R	15466514	2R_15466514_SNP [dm3] 2R_19579009_SNP [dm6]	A	G	1.419e^-5	0.853	INTRON sm
2R	15466557	2R_15466557_SNP [dm3] 2R_19579052_SNP [dm6]	T	C	1.419e^-5	0.853	INTRON sm
3R	20788771	3R_20788771_SNP [dm3] 3R_24963049_SNP [dm6]	A	G	1.460e^-5	0.853	INTERGENIC
2R	12137491	2R_12137491_SNP [dm3] 2R_16249986_SNP [dm6]	A	T	1.502e^-5	0.853	UPSTREAM CngA INTRON CngA
2R	15466501	2R_15466501_SNP [dm3] 2R_19578996_SNP [dm6]	G	C	1.522e^-5	0.853	INTRON sm
3R	9723638	3R_9723638_SNP [dm3] 3R_13897916_SNP [dm6]	C	G	1.546e^-5	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11821965	2L_11821965_SNP [dm3] 2L_11821965_SNP [dm6]	T	A	1.640e^-5	0.872	UPSTREAM Pde1c INTRON Pde1c
2R	15466386	2R_15466386_SNP [dm3] 2R_19578881_SNP [dm6]	C	G	1.684e^-5	0.872	INTRON sm
3L	7826788	3L_7826788_SNP [dm3] 3L_7833688_SNP [dm6]	T	A	1.720e^-5	0.872	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_Trl
2R	12137504	2R_12137504_SNP [dm3] 2R_16249999_SNP [dm6]	C	T	1.825e^-5	0.901	UPSTREAM CngA INTRON CngA
2R	5085995	2R_5085995_SNP [dm3] 2R_9198490_SNP [dm6]	A	C	1.925e^-5	0.909	INTRON unpg	transposable element FlyBase
3L	12023867	3L_12023867_SNP [dm3] 3L_12030767_SNP [dm6]	C	T	1.975e^-5	0.909	INTRON rols	TF binding site mE1_TFBS_cad
3L	19081282	3L_19081282_SNP [dm3] 3L_19088182_SNP [dm6]	T	G	2.100e^-5	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3967536	X_3967536_SNP [dm3] X_4073503_SNP [dm6]	T	C	2.128e^-5	0.909	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3268066	2L_3268066_SNP [dm3] 2L_3268066_SNP [dm6]	T	C	2.139e^-5	0.909	UPSTREAM CR44484 INTERGENIC
2R	9145253	2R_9145253_SNP [dm3] 2R_13257748_SNP [dm6]	A	G	2.142e^-5	0.909	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
3R	5098742	3R_5098742_SNP [dm3] 3R_9273020_SNP [dm6]	A	T	2.194e^-5	0.909	INTERGENIC
2R	8534699	2R_8534699_DEL [dm3] 2R_12647194_DEL [dm6]	AC	G	2.230e^-5	0.909	INTRON CG8785
3L	7826664	3L_7826664_SNP [dm3] 3L_7833564_SNP [dm6]	C	A	2.294e^-5	0.916	UPSTREAM Pdp1 INTRON Pdp1
2L	19166430	2L_19166430_INS [dm3] 2L_19166430_INS [dm6]	G	GGGG	2.442e^-5	0.939	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	5425397	X_5425397_SNP [dm3] X_5531364_SNP [dm6]	A	T	2.518e^-5	0.939	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19546477	2R_19546477_SNP [dm3] 2R_23658954_SNP [dm6]	T	A	2.591e^-5	0.939	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13538099	3L_13538099_SNP [dm3] 3L_13544999_SNP [dm6]	A	G	2.678e^-5	0.939	INTRON bru-3	TF binding site BDTNP1_TFBS_dl
2R	12137465	2R_12137465_SNP [dm3] 2R_16249960_SNP [dm6]	G	A	2.742e^-5	0.939	UPSTREAM CngA INTRON CngA
3R	21383066	3R_21383066_SNP [dm3] 3R_25557344_SNP [dm6]	T	A	2.765e^-5	0.939	INTRON msi
X	6203980	X_6203980_SNP [dm3] X_6309947_SNP [dm6]	G	T	2.802e^-5	0.939	INTRON CG15894
2R	19546481	2R_19546481_SNP [dm3] 2R_23658958_SNP [dm6]	C	T	2.881e^-5	0.939	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546473	2R_19546473_SNP [dm3] 2R_23658950_SNP [dm6]	G	C	2.890e^-5	0.939	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19546452	2R_19546452_SNP [dm3] 2R_23658929_SNP [dm6]	A	C	2.902e^-5	0.939	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7859361	3L_7859361_SNP [dm3] 3L_7866261_SNP [dm6]	T	A	3.070e^-5	0.939	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	16275585	2R_16275585_SNP [dm3] 2R_20388080_SNP [dm6]	T	A	3.264e^-5	0.939	INTERGENIC
3L	19081248	3L_19081248_SNP [dm3] 3L_19088148_SNP [dm6]	C	A	3.334e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24871998	3R_24871998_SNP [dm3] 3R_29046276_SNP [dm6]	C	G	3.354e^-5	0.939	UTR_3_PRIME Pkc98E
3L	14419056	3L_14419056_DEL [dm3] 3L_14425956_DEL [dm6]	TTTCGT	T	3.373e^-5	0.939	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19230090	2R_19230090_SNP [dm3] 2R_23342567_SNP [dm6]	A	G	3.499e^-5	0.939	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6273253	2L_6273253_SNP [dm3] 2L_6273253_SNP [dm6]	A	T	3.519e^-5	0.939	INTRON Ddr
2L	9654992	2L_9654992_SNP [dm3] 2L_9654992_SNP [dm6]	G	T	3.553e^-5	0.939	NON_SYNONYMOUS_CODING Apoltp
2L	9654862	2L_9654862_SNP [dm3] 2L_9654862_SNP [dm6]	C	T	3.744e^-5	0.939	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12530300	2R_12530300_SNP [dm3] 2R_16642795_SNP [dm6]	G	C	3.932e^-5	0.939	INTRON gprs
2R	16440115	2R_16440115_SNP [dm3] 2R_20552610_SNP [dm6]	G	A	3.962e^-5	0.939	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18388893	3L_18388893_SNP [dm3] 3L_18395793_SNP [dm6]	G	A	3.975e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7135221	3L_7135221_SNP [dm3] 3L_7142121_SNP [dm6]	C	T	4.021e^-5	0.939	DOWNSTREAM corn INTRON melt
2L	9654879	2L_9654879_SNP [dm3] 2L_9654879_SNP [dm6]	C	A	4.024e^-5	0.939	NON_SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8769531	3R_8769531_SNP [dm3] 3R_12943809_SNP [dm6]	C	T	4.229e^-5	0.939	INTERGENIC
2R	20233465	2R_20233465_INS [dm3] 2R_24345942_INS [dm6]	T	TTAT	4.233e^-5	0.939	INTRON bs
2R	19439701	2R_19439701_SNP [dm3] 2R_23552178_SNP [dm6]	C	A	4.238e^-5	0.939	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17430389	X_17430389_SNP [dm3] X_17536356_SNP [dm6]	A	C	4.242e^-5	0.939	INTRON CG43658
3R	19170310	3R_19170310_SNP [dm3] 3R_23344588_SNP [dm6]	T	C	4.264e^-5	0.939	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20312675	2R_20312675_SNP [dm3] 2R_24425152_SNP [dm6]	C	A	4.273e^-5	0.939	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9217213	2R_9217213_SNP [dm3] 2R_13329708_SNP [dm6]	G	A	4.319e^-5	0.939	UPSTREAM mir-184 EXON CR44206
2L	4280195	2L_4280195_SNP [dm3] 2L_4280195_SNP [dm6]	C	T	4.378e^-5	0.939	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21087292	X_21087292_SNP [dm3] X_21216265_SNP [dm6]	A	G	4.524e^-5	0.939	INTRON CG32521	transposable element FlyBase
X	20447505	X_20447505_DEL [dm3] X_20576478_DEL [dm6]	AAGGATATCTGACAGTCGGG...	A	4.537e^-5	0.939	INTERGENIC	transposable element FlyBase
2L	9747996	2L_9747996_INS [dm3] 2L_9747996_INS [dm6]	T	TT	4.555e^-5	0.939	UTR_3_PRIME Cyp4e3
2R	20233359	2R_20233359_SNP [dm3] 2R_24345836_SNP [dm6]	T	C	4.572e^-5	0.939	INTRON bs
2L	9655244	2L_9655244_SNP [dm3] 2L_9655244_SNP [dm6]	G	T	4.763e^-5	0.939	SYNONYMOUS_CODING Apoltp
3R	8094862	3R_8094862_SNP [dm3] 3R_12269140_SNP [dm6]	C	T	5.024e^-5	0.939	INTRON svp & 1 other
2R	20249679	2R_20249679_SNP [dm3] 2R_24362156_SNP [dm6]	T	C	5.086e^-5	0.939	INTRON bs & 1 other
3L	1727403	3L_1727403_SNP [dm3] 3L_1727403_SNP [dm6]	T	A	5.112e^-5	0.939	INTRON drpr	TF binding site BDTNP1_TFBS_twi
2L	4280197	2L_4280197_SNP [dm3] 2L_4280197_SNP [dm6]	A	T	5.162e^-5	0.939	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20836785	X_20836785_SNP [dm3] X_20965758_SNP [dm6]	T	G	5.216e^-5	0.939	UPSTREAM CG1304 INTERGENIC
3R	9726662	3R_9726662_SNP [dm3] 3R_13900940_SNP [dm6]	T	C	5.237e^-5	0.939	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18294801	3L_18294801_SNP [dm3] 3L_18301701_SNP [dm6]	C	G	5.500e^-5	0.939	UPSTREAM CG13700 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6446931	X_6446931_SNP [dm3] X_6552898_SNP [dm6]	T	A	5.530e^-5	0.939	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10959977	X_10959977_SNP [dm3] X_11065944_SNP [dm6]	A	G	5.558e^-5	0.939	UPSTREAM CG15203 EXON CR45614
3R	25960500	3R_25960500_SNP [dm3] 3R_30134778_SNP [dm6]	G	T	5.627e^-5	0.939	UPSTREAM Tpi DOWNSTREAM AdoR INTERGENIC
2R	19548142	2R_19548142_SNP [dm3] 2R_23660619_SNP [dm6]	C	T	5.677e^-5	0.939	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	7826669	3L_7826669_SNP [dm3] 3L_7833569_SNP [dm6]	T	C	5.693e^-5	0.939	UPSTREAM Pdp1 INTRON Pdp1
2R	15940819	2R_15940819_SNP [dm3] 2R_20053314_SNP [dm6]	C	T	5.813e^-5	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	7533141	3R_7533141_SNP [dm3] 3R_11707419_SNP [dm6]	T	A	5.901e^-5	0.939	INTERGENIC
3L	12454840	3L_12454840_SNP [dm3] 3L_12461740_SNP [dm6]	C	G	5.965e^-5	0.939	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
2R	17474722	2R_17474722_SNP [dm3] 2R_21587217_SNP [dm6]	A	G	6.008e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17327629	2R_17327629_INS [dm3] 2R_21440124_INS [dm6]	A	AA	6.134e^-5	0.939	INTRON Sdc
2R	14720533	2R_14720533_SNP [dm3] 2R_18833028_SNP [dm6]	C	A	6.140e^-5	0.939	SYNONYMOUS_CODING CG15082 DOWNSTREAM CG15098
2R	12440438	2R_12440438_SNP [dm3] 2R_16552933_SNP [dm6]	A	G	6.189e^-5	0.939	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12048833	3L_12048833_SNP [dm3] 3L_12055733_SNP [dm6]	C	G	6.335e^-5	0.939	SPLICE_SITE_ACCEPTOR rols START_GAINED rols UTR_5_PRIME rols INTRON rols
2R	17474669	2R_17474669_SNP [dm3] 2R_21587164_SNP [dm6]	C	G	6.363e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19299446	X_19299446_SNP [dm3] X_19405413_SNP [dm6]	T	G	6.471e^-5	0.939	INTRON kek5
2L	7259916	2L_7259916_SNP [dm3] 2L_7259916_SNP [dm6]	C	T	6.562e^-5	0.939	INTRON Wnt4
3L	5471091	3L_5471091_INS [dm3] 3L_5477991_INS [dm6]	G	GG	6.572e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7854899	3L_7854899_SNP [dm3] 3L_7861799_SNP [dm6]	G	A	6.587e^-5	0.939	INTRON Pdp1
3L	11877549	3L_11877549_DEL [dm3] 3L_11884449_DEL [dm6]	TGTGATGTT	A	6.619e^-5	0.939	DOWNSTREAM CCDC151 INTRON CG44837
3L	10944318	3L_10944318_INS [dm3] 3L_10951218_INS [dm6]	A	AAATACAAA	6.625e^-5	0.939	INTERGENIC
X	16345268	X_16345268_SNP [dm3] X_16451235_SNP [dm6]	A	C	6.781e^-5	0.939	INTRON Rbp2	TF binding site mE1_TFBS_HSA
X	18931412	X_18931412_SNP [dm3] X_19037379_SNP [dm6]	G	T	6.792e^-5	0.939	INTERGENIC
2R	8131290	2R_8131290_SNP [dm3] 2R_12243785_SNP [dm6]	T	G	6.936e^-5	0.939	DOWNSTREAM CG43244 & 1 other INTERGENIC
2R	20228442	2R_20228442_SNP [dm3] 2R_24340919_SNP [dm6]	T	A	7.123e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6467710	2L_6467710_SNP [dm3] 2L_6467710_SNP [dm6]	A	T	7.163e^-5	0.939	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11000438	3L_11000438_SNP [dm3] 3L_11007338_SNP [dm6]	G	T	7.228e^-5	0.939	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19123022	2L_19123022_DEL [dm3] 2L_19123022_DEL [dm6]	TG	T	7.280e^-5	0.939	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	19123063	2L_19123063_SNP [dm3] 2L_19123063_SNP [dm6]	C	G	7.337e^-5	0.939	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
X	16090825	X_16090825_SNP [dm3] X_16196792_SNP [dm6]	G	T	7.364e^-5	0.939	INTERGENIC
3L	5604182	3L_5604182_SNP [dm3] 3L_5611082_SNP [dm6]	A	T	7.433e^-5	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9282728	2R_9282728_SNP [dm3] 2R_13395223_SNP [dm6]	T	A	7.504e^-5	0.939	SYNONYMOUS_CODING CG4744 DOWNSTREAM AttC
2L	6799541	2L_6799541_SNP [dm3] 2L_6799541_SNP [dm6]	A	G	7.557e^-5	0.939	UPSTREAM tRNA:CR31631 & 1 other DOWNSTREAM CG17376 EXON CR43610	regulatory region REDfly_CRMs
3L	478145	3L_478145_DEL [dm3] 3L_478145_DEL [dm6]	GT	G	7.587e^-5	0.939	INTRON klar	TF binding site BDTNP1_TFBS_da
2R	19693046	2R_19693046_SNP [dm3] 2R_23805523_SNP [dm6]	T	C	7.701e^-5	0.939	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20985484	3R_20985484_SNP [dm3] 3R_25159762_SNP [dm6]	G	A	7.731e^-5	0.939	INTERGENIC
2L	21995941	2L_21995941_SNP [dm3] 2L_21995941_SNP [dm6]	A	C	7.748e^-5	0.939	INTERGENIC
X	1677103	X_1677103_SNP [dm3] X_1783070_SNP [dm6]	T	G	7.867e^-5	0.939	INTRON CG42666 & 1 other	TF binding site mE1_TFBS_cad
3L	9196554	3L_9196554_SNP [dm3] 3L_9203454_SNP [dm6]	A	C	7.874e^-5	0.939	SYNONYMOUS_CODING Slc45-1
2L	6467708	2L_6467708_SNP [dm3] 2L_6467708_SNP [dm6]	T	C	7.876e^-5	0.939	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11369351	3R_11369351_SNP [dm3] 3R_15543629_SNP [dm6]	A	T	8.109e^-5	0.939	SYNONYMOUS_CODING CG6045	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8716998	X_8716998_SNP [dm3] X_8822965_SNP [dm6]	T	G	8.130e^-5	0.939	INTERGENIC
2L	19942454	2L_19942454_SNP [dm3] 2L_19942454_SNP [dm6]	A	T	8.138e^-5	0.939	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	17428866	2R_17428866_SNP [dm3] 2R_21541361_SNP [dm6]	A	G	8.150e^-5	0.939	UPSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	9196633	3L_9196633_SNP [dm3] 3L_9203533_SNP [dm6]	G	C	8.190e^-5	0.939	NON_SYNONYMOUS_CODING Slc45-1
3R	8769578	3R_8769578_SNP [dm3] 3R_12943856_SNP [dm6]	G	T	8.199e^-5	0.939	INTERGENIC
2L	19930210	2L_19930210_SNP [dm3] 2L_19930210_SNP [dm6]	T	C	8.221e^-5	0.939	INTRON sick
2L	11821958	2L_11821958_SNP [dm3] 2L_11821958_SNP [dm6]	G	A	8.365e^-5	0.939	UPSTREAM Pde1c INTRON Pde1c
X	9314041	X_9314041_SNP [dm3] X_9420008_SNP [dm6]	G	A	8.435e^-5	0.939	INTRON mgl
2R	19547841	2R_19547841_INS [dm3] 2R_23660318_INS [dm6]	G	GGTG	8.474e^-5	0.939	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11708901	2L_11708901_SNP [dm3] 2L_11708901_SNP [dm6]	G	A	8.540e^-5	0.939	INTERGENIC
3L	7826620	3L_7826620_SNP [dm3] 3L_7833520_SNP [dm6]	A	G	8.656e^-5	0.939	UPSTREAM Pdp1 INTRON Pdp1
X	20836970	X_20836970_SNP [dm3] X_20965943_SNP [dm6]	C	T	8.660e^-5	0.939	UPSTREAM CG1304 INTERGENIC
2L	7366243	2L_7366243_SNP [dm3] 2L_7366243_SNP [dm6]	T	A	8.663e^-5	0.939	INTRON Wnt10
3L	10361517	3L_10361517_SNP [dm3] 3L_10368417_SNP [dm6]	A	G	8.701e^-5	0.939	DOWNSTREAM CR44327 INTERGENIC
3R	11367532	3R_11367532_SNP [dm3] 3R_15541810_SNP [dm6]	G	T	9.001e^-5	0.939	SYNONYMOUS_CODING CG18519 DOWNSTREAM CG6045	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6043690	2R_6043690_SNP [dm3] 2R_10156185_SNP [dm6]	C	T	9.053e^-5	0.939	UTR_3_PRIME mlt DOWNSTREAM mlt INTRON KCNQ
3R	14947135	3R_14947135_SNP [dm3] 3R_19121413_SNP [dm6]	G	C	9.106e^-5	0.939	INTRON CG6040
2R	19404136	2R_19404136_DEL [dm3] 2R_23516613_DEL [dm6]	TTG	GA	9.120e^-5	0.939	INTERGENIC
2R	9282716	2R_9282716_SNP [dm3] 2R_13395211_SNP [dm6]	G	A	9.210e^-5	0.939	SYNONYMOUS_CODING CG4744 DOWNSTREAM AttC
2R	19548249	2R_19548249_SNP [dm3] 2R_23660726_SNP [dm6]	A	G	9.213e^-5	0.939	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	20447359	X_20447359_DEL [dm3] X_20576332_DEL [dm6]	AG	A	9.375e^-5	0.939	INTERGENIC	transposable element FlyBase
3R	4144730	3R_4144730_SNP [dm3] 3R_8319008_SNP [dm6]	A	T	9.540e^-5	0.939	UTR_3_PRIME Ctr1B DOWNSTREAM Poxm
2L	6305355	2L_6305355_SNP [dm3] 2L_6305355_SNP [dm6]	T	C	9.554e^-5	0.939	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9647732	2L_9647732_SNP [dm3] 2L_9647732_SNP [dm6]	C	A	9.758e^-5	0.939	SYNONYMOUS_CODING Apoltp
2R	17428907	2R_17428907_SNP [dm3] 2R_21541402_SNP [dm6]	G	T	9.885e^-5	0.939	UPSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	7366226	2L_7366226_SNP [dm3] 2L_7366226_SNP [dm6]	G	A	9.922e^-5	0.939	INTRON Wnt10
2L	19874890	2L_19874890_SNP [dm3] 2L_19874890_SNP [dm6]	G	C	9.986e^-5	0.939	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19883136	2L_19883136_SNP [dm3] 2L_19883136_SNP [dm6]	G	C	1.005e^-4	0.939	INTRON sick
3R	10349959	3R_10349959_SNP [dm3] 3R_14524237_SNP [dm6]	C	T	1.013e^-4	0.939	INTRON Pde6
2R	1816688	2R_1816688_SNP [dm3] 2R_5929183_SNP [dm6]	C	T	1.025e^-4	0.939	SYNONYMOUS_CODING CG43366
X	6471677	X_6471677_SNP [dm3] X_6577644_SNP [dm6]	G	T	1.041e^-4	0.939	INTRON CG34417
2L	3149846	2L_3149846_SNP [dm3] 2L_3149846_SNP [dm6]	G	A	1.042e^-4	0.939	INTRON Mad
3L	3044617	3L_3044617_SNP [dm3] 3L_3044617_SNP [dm6]	T	A	1.046e^-4	0.939	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site mE1_TFBS_HSA
3L	9591316	3L_9591316_SNP [dm3] 3L_9598216_SNP [dm6]	T	C	1.053e^-4	0.939	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23232381	3R_23232381_SNP [dm3] 3R_27406659_SNP [dm6]	A	G	1.053e^-4	0.939	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19456078	2R_19456078_SNP [dm3] 2R_23568555_SNP [dm6]	C	A	1.075e^-4	0.939	INTRON apt
X	10959966	X_10959966_SNP [dm3] X_11065933_SNP [dm6]	A	T	1.075e^-4	0.939	UPSTREAM CG15203 EXON CR45614
2L	7369171	2L_7369171_SNP [dm3] 2L_7369171_SNP [dm6]	A	G	1.095e^-4	0.939	DOWNSTREAM CR44063 INTRON Wnt10
2L	17414561	2L_17414561_SNP [dm3] 2L_17414561_SNP [dm6]	G	T	1.099e^-4	0.939	DOWNSTREAM Dif INTRON Dif
3L	10944314	3L_10944314_SNP [dm3] 3L_10951214_SNP [dm6]	A	T	1.104e^-4	0.939	INTERGENIC
3R	15849051	3R_15849051_SNP [dm3] 3R_20023329_SNP [dm6]	T	G	1.105e^-4	0.939	INTRON psidin	TF binding site mE1_TFBS_cad
2R	12864217	2R_12864217_SNP [dm3] 2R_16976712_SNP [dm6]	C	G	1.106e^-4	0.939	INTRON Cbp53E
3R	25965841	3R_25965841_SNP [dm3] 3R_30140119_SNP [dm6]	G	A	1.113e^-4	0.939	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3L	9574783	3L_9574783_SNP [dm3] 3L_9581683_SNP [dm6]	C	T	1.123e^-4	0.939	SYNONYMOUS_CODING CG42673
2L	8865311	2L_8865311_SNP [dm3] 2L_8865311_SNP [dm6]	T	C	1.125e^-4	0.939	SYNONYMOUS_CODING CG32988 UPSTREAM CG32983 DOWNSTREAM CG32987 EXON CR45260	TF binding site mE1_TFBS_HSA
2R	14955110	2R_14955110_SNP [dm3] 2R_19067605_SNP [dm6]	C	T	1.142e^-4	0.939	INTRON 5-HT1A
X	5728364	X_5728364_SNP [dm3] X_5834331_SNP [dm6]	G	C	1.146e^-4	0.939	INTRON CG15765
X	14805567	X_14805567_SNP [dm3] X_14911534_SNP [dm6]	T	C	1.153e^-4	0.939	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
2R	19595698	2R_19595698_SNP [dm3] 2R_23708175_SNP [dm6]	C	T	1.160e^-4	0.939	NON_SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14950716	2L_14950716_SNP [dm3] 2L_14950716_SNP [dm6]	T	G	1.160e^-4	0.939	INTRON CG42313
X	8716744	X_8716744_SNP [dm3] X_8822711_SNP [dm6]	A	T	1.160e^-4	0.939	INTERGENIC
2L	20699954	2L_20699954_SNP [dm3] 2L_20699954_SNP [dm6]	A	G	1.170e^-4	0.939	INTRON Hr38
X	7105519	X_7105519_SNP [dm3] X_7211486_SNP [dm6]	A	G	1.171e^-4	0.939	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10195336	2R_10195336_SNP [dm3] 2R_14307831_SNP [dm6]	G	T	1.185e^-4	0.939	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17262747	2R_17262747_SNP [dm3] 2R_21375242_SNP [dm6]	A	G	1.187e^-4	0.939	INTRON cv-2
X	14617182	X_14617182_DEL [dm3] X_14723149_DEL [dm6]	TAGCTA	T	1.204e^-4	0.939	INTRON NetB	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sbb
2R	17452534	2R_17452534_SNP [dm3] 2R_21565029_SNP [dm6]	A	T	1.219e^-4	0.939	INTRON CG10440
2L	4328137	2L_4328137_SNP [dm3] 2L_4328137_SNP [dm6]	C	T	1.223e^-4	0.939	INTRON CG16857
2L	12672035	2L_12672035_SNP [dm3] 2L_12672035_SNP [dm6]	T	A	1.224e^-4	0.939	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	10049498	3L_10049498_SNP [dm3] 3L_10056398_SNP [dm6]	G	A	1.224e^-4	0.939	INTRON dpr6
X	12838449	X_12838449_SNP [dm3] X_12944416_SNP [dm6]	A	T	1.228e^-4	0.939	INTRON fne
3R	15034406	3R_15034406_SNP [dm3] 3R_19208684_SNP [dm6]	C	T	1.229e^-4	0.939	INTERGENIC
2L	9746231	2L_9746231_SNP [dm3] 2L_9746231_SNP [dm6]	C	T	1.234e^-4	0.939	INTRON Nckx30C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20447333	X_20447333_DEL [dm3] X_20576306_DEL [dm6]	TG	T	1.238e^-4	0.939	INTERGENIC	transposable element FlyBase
X	16345942	X_16345942_SNP [dm3] X_16451909_SNP [dm6]	A	T	1.240e^-4	0.939	INTRON Rbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21030925	3R_21030925_SNP [dm3] 3R_25205203_SNP [dm6]	G	A	1.240e^-4	0.939	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	20985560	3R_20985560_SNP [dm3] 3R_25159838_SNP [dm6]	T	A	1.243e^-4	0.939	INTERGENIC
2L	13171914	2L_13171914_SNP [dm3] 2L_13171914_SNP [dm6]	G	T	1.248e^-4	0.939	SYNONYMOUS_CODING Sfmbt
3L	16668743	3L_16668743_SNP [dm3] 3L_16675643_SNP [dm6]	A	G	1.261e^-4	0.939	SYNONYMOUS_CODING CG13032 DOWNSTREAM Lasp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16271424	3L_16271424_DEL [dm3] 3L_16278324_DEL [dm6]	TG	C	1.277e^-4	0.939	DOWNSTREAM CG13050 & 1 other INTERGENIC
3R	14996866	3R_14996866_INS [dm3] 3R_19171144_INS [dm6]	C	CAACAATTCTC...	1.286e^-4	0.939	DOWNSTREAM sqz INTERGENIC
2R	14955111	2R_14955111_SNP [dm3] 2R_19067606_SNP [dm6]	G	A	1.301e^-4	0.939	INTRON 5-HT1A
3R	14912851	3R_14912851_SNP [dm3] 3R_19087129_SNP [dm6]	C	A	1.309e^-4	0.939	INTRON cdi	TF binding site mE1_TFBS_chinmo
2L	12588572	2L_12588572_SNP [dm3] 2L_12588572_SNP [dm6]	A	G	1.312e^-4	0.939	INTRON nub
2R	7696582	2R_7696582_SNP [dm3] 2R_11809077_SNP [dm6]	T	C	1.320e^-4	0.939	INTRON ths	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7931219	X_7931219_SNP [dm3] X_8037186_SNP [dm6]	G	A	1.326e^-4	0.939	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2R	8668084	2R_8668084_SNP [dm3] 2R_12780579_SNP [dm6]	C	T	1.327e^-4	0.939	UTR_5_PRIME sca	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13276987	3L_13276987_SNP [dm3] 3L_13283887_SNP [dm6]	G	A	1.330e^-4	0.939	DOWNSTREAM CR43146 EXON CR43913
2R	17447642	2R_17447642_SNP [dm3] 2R_21560137_SNP [dm6]	G	C	1.338e^-4	0.939	DOWNSTREAM CG10440 & 1 other INTERGENIC
2R	2900509	2R_2900509_SNP [dm3] 2R_7013004_SNP [dm6]	G	A	1.344e^-4	0.939	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	16275645	2R_16275645_SNP [dm3] 2R_20388140_SNP [dm6]	C	T	1.352e^-4	0.939	INTERGENIC
3L	22768357	3L_22768357_SNP [dm3] 3L_22775257_SNP [dm6]	A	G	1.363e^-4	0.939	INTRON SPoCk	TF binding site mE1_TFBS_inv
2L	10145834	2L_10145834_SNP [dm3] 2L_10145834_SNP [dm6]	G	A	1.365e^-4	0.939	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
3L	4547171	3L_4547171_SNP [dm3] 3L_4547171_SNP [dm6]	T	C	1.368e^-4	0.939	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11154965	2L_11154965_INS [dm3] 2L_11154965_INS [dm6]	T	TT	1.374e^-4	0.939	INTRON CG6287
2R	11421843	2R_11421843_SNP [dm3] 2R_15534338_SNP [dm6]	G	T	1.377e^-4	0.939	INTRON CG30471
2R	17048738	2R_17048738_SNP [dm3] 2R_21161233_SNP [dm6]	A	G	1.384e^-4	0.939	UPSTREAM CG30389 & 2 others DOWNSTREAM tRNA:G3:57BCa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21384771	3R_21384771_SNP [dm3] 3R_25559049_SNP [dm6]	C	G	1.387e^-4	0.939	INTRON msi
2L	7358648	2L_7358648_SNP [dm3] 2L_7358648_SNP [dm6]	G	A	1.388e^-4	0.939	INTERGENIC
2L	9647666	2L_9647666_SNP [dm3] 2L_9647666_SNP [dm6]	T	C	1.394e^-4	0.939	SYNONYMOUS_CODING Apoltp
2L	5440111	2L_5440111_SNP [dm3] 2L_5440111_SNP [dm6]	C	A	1.411e^-4	0.939	UPSTREAM CR31647 INTERGENIC
2R	12126936	2R_12126936_SNP [dm3] 2R_16239431_SNP [dm6]	A	G	1.415e^-4	0.939	SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20253896	2R_20253896_SNP [dm3] 2R_24366373_SNP [dm6]	C	G	1.430e^-4	0.939	INTRON bs & 1 other
3L	14319148	3L_14319148_SNP [dm3] 3L_14326048_SNP [dm6]	A	C	1.435e^-4	0.939	INTRON fz & 1 other
2R	1641614	2R_1641614_SNP [dm3] 2R_5754109_SNP [dm6]	A	G	1.442e^-4	0.939	UPSTREAM l_2_09851 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16428585	2L_16428585_INS [dm3] 2L_16428585_INS [dm6]	A	TG	1.447e^-4	0.939	INTRON CG5888
2L	7358666	2L_7358666_SNP [dm3] 2L_7358666_SNP [dm6]	G	A	1.458e^-4	0.939	INTERGENIC
2R	4408398	2R_4408398_INS [dm3] 2R_8520893_INS [dm6]	A	AA	1.460e^-4	0.939	INTRON mtt
3L	6513957	3L_6513957_SNP [dm3] 3L_6520857_SNP [dm6]	G	A	1.465e^-4	0.939	INTRON sfl
2R	19540295	2R_19540295_SNP [dm3] 2R_23652772_SNP [dm6]	A	G	1.470e^-4	0.939	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	1684231	X_1684231_SNP [dm3] X_1790198_SNP [dm6]	T	C	1.472e^-4	0.939	SYNONYMOUS_CODING CG32806 INTRON CG42666
2R	19545260	2R_19545260_SNP [dm3] 2R_23657737_SNP [dm6]	C	G	1.472e^-4	0.939	UTR_5_PRIME Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3707880	X_3707880_SNP [dm3] X_3813847_SNP [dm6]	G	C	1.476e^-4	0.939	INTRON ec
2R	8338559	2R_8338559_SNP [dm3] 2R_12451054_SNP [dm6]	G	C	1.478e^-4	0.939	NON_SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12840595	2L_12840595_SNP [dm3] 2L_12840595_SNP [dm6]	C	A	1.483e^-4	0.939	UPSTREAM CR44970 & 1 other INTERGENIC
3L	18388892	3L_18388892_SNP [dm3] 3L_18395792_SNP [dm6]	T	C	1.486e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5897030	X_5897030_SNP [dm3] X_6002997_SNP [dm6]	T	C	1.491e^-4	0.939	INTRON CR44498
2R	17939084	2R_17939084_SNP [dm3] 2R_22051579_SNP [dm6]	T	C	1.492e^-4	0.939	INTERGENIC
3R	21630620	3R_21630620_SNP [dm3] 3R_25804898_SNP [dm6]	C	T	1.495e^-4	0.939	INTERGENIC
2L	7358685	2L_7358685_SNP [dm3] 2L_7358685_SNP [dm6]	G	A	1.501e^-4	0.939	INTERGENIC
2L	16430473	2L_16430473_SNP [dm3] 2L_16430473_SNP [dm6]	G	A	1.502e^-4	0.939	INTRON CG5888
2L	12672041	2L_12672041_SNP [dm3] 2L_12672041_SNP [dm6]	A	G	1.505e^-4	0.939	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	14947091	3R_14947091_SNP [dm3] 3R_19121369_SNP [dm6]	T	G	1.515e^-4	0.939	INTRON CG6040
X	3862049	X_3862049_SNP [dm3] X_3968016_SNP [dm6]	T	C	1.515e^-4	0.939	UPSTREAM CR45481 DOWNSTREAM CG6414 INTRON CG6428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	11150089	3L_11150089_SNP [dm3] 3L_11156989_SNP [dm6]	A	G	1.523e^-4	0.939	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5113727	3R_5113727_SNP [dm3] 3R_9288005_SNP [dm6]	C	T	1.529e^-4	0.939	INTERGENIC
2R	17448371	2R_17448371_SNP [dm3] 2R_21560866_SNP [dm6]	A	G	1.533e^-4	0.939	UTR_3_PRIME CG10440 DOWNSTREAM Egfr
X	21087281	X_21087281_INS [dm3] X_21216254_INS [dm6]	A	AA	1.537e^-4	0.939	INTRON CG32521	transposable element FlyBase
3L	10606856	3L_10606856_SNP [dm3] 3L_10613756_SNP [dm6]	G	T	1.539e^-4	0.939	INTERGENIC
2R	12554423	2R_12554423_SNP [dm3] 2R_16666918_SNP [dm6]	C	T	1.556e^-4	0.939	INTRON Picot
3R	14728529	3R_14728529_SNP [dm3] 3R_18902807_SNP [dm6]	A	T	1.559e^-4	0.939	UPSTREAM CG14294 INTRON CG34284	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12022057	2L_12022057_SNP [dm3] 2L_12022057_SNP [dm6]	T	C	1.561e^-4	0.939	INTERGENIC
X	1677108	X_1677108_SNP [dm3] X_1783075_SNP [dm6]	C	A	1.562e^-4	0.939	INTRON CG42666 & 1 other	TF binding site mE1_TFBS_cad
X	16345940	X_16345940_SNP [dm3] X_16451907_SNP [dm6]	T	C	1.562e^-4	0.939	INTRON Rbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18342132	2R_18342132_SNP [dm3] 2R_22454627_SNP [dm6]	A	T	1.595e^-4	0.939	UPSTREAM CG10384 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4711712	X_4711712_SNP [dm3] X_4817679_SNP [dm6]	A	G	1.600e^-4	0.939	INTERGENIC
3R	21544963	3R_21544963_SNP [dm3] 3R_25719241_SNP [dm6]	G	A	1.609e^-4	0.939	INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6171845	3L_6171845_SNP [dm3] 3L_6178745_SNP [dm6]	T	C	1.612e^-4	0.939	UTR_3_PRIME CG7376 & 1 other
2L	11704717	2L_11704717_SNP [dm3] 2L_11704717_SNP [dm6]	C	G	1.619e^-4	0.939	INTERGENIC
3R	22565402	3R_22565402_SNP [dm3] 3R_26739680_SNP [dm6]	G	T	1.622e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22565534	3R_22565534_SNP [dm3] 3R_26739812_SNP [dm6]	A	G	1.622e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22565572	3R_22565572_SNP [dm3] 3R_26739850_SNP [dm6]	C	T	1.622e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8084982	3R_8084982_SNP [dm3] 3R_12259260_SNP [dm6]	G	A	1.623e^-4	0.939	INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da
X	2685416	X_2685416_SNP [dm3] X_2791383_SNP [dm6]	G	A	1.635e^-4	0.939	UPSTREAM CG32795 INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11426616	2R_11426616_SNP [dm3] 2R_15539111_SNP [dm6]	A	G	1.635e^-4	0.939	SYNONYMOUS_CODING CG30467 DOWNSTREAM CG8187	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7826784	3L_7826784_SNP [dm3] 3L_7833684_SNP [dm6]	G	T	1.638e^-4	0.939	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_Trl
2L	15333210	2L_15333210_SNP [dm3] 2L_15333210_SNP [dm6]	A	T	1.640e^-4	0.939	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6513949	3L_6513949_SNP [dm3] 3L_6520849_SNP [dm6]	T	A	1.640e^-4	0.939	INTRON sfl
X	9006947	X_9006947_SNP [dm3] X_9112914_SNP [dm6]	C	T	1.646e^-4	0.939	INTRON AP-1gamma
3L	8312413	3L_8312413_SNP [dm3] 3L_8319313_SNP [dm6]	T	A	1.651e^-4	0.939	UPSTREAM CG43059 INTERGENIC
2L	9923302	2L_9923302_DEL [dm3] 2L_9923302_DEL [dm6]	TGGT	T	1.670e^-4	0.939	SPLICE_SITE_REGION TbCMF46 DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20934179	2L_20934179_SNP [dm3] 2L_20934179_SNP [dm6]	C	T	1.680e^-4	0.939	UPSTREAM CG9270 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16271445	3L_16271445_DEL [dm3] 3L_16278345_DEL [dm6]	TATA	T	1.682e^-4	0.939	DOWNSTREAM CG13050 & 1 other INTERGENIC
3R	21192921	3R_21192921_SNP [dm3] 3R_25367199_SNP [dm6]	G	A	1.683e^-4	0.939	INTRON Fur1
2R	17033427	2R_17033427_SNP [dm3] 2R_21145922_SNP [dm6]	C	A	1.689e^-4	0.939	UPSTREAM Hmg-2 DOWNSTREAM Xbp1 INTERGENIC
3R	4127008	3R_4127008_SNP [dm3] 3R_8301286_SNP [dm6]	A	G	1.696e^-4	0.939	UPSTREAM mRpL1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19327303	2R_19327303_SNP [dm3] 2R_23439780_SNP [dm6]	C	T	1.708e^-4	0.939	DOWNSTREAM Or59a INTERGENIC
3L	15351328	3L_15351328_SNP [dm3] 3L_15358228_SNP [dm6]	A	C	1.718e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9934632	X_9934632_SNP [dm3] X_10040599_SNP [dm6]	T	G	1.720e^-4	0.939	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
3L	20060780	3L_20060780_INS [dm3] 3L_20067680_INS [dm6]	C	GTATCAAAACAAATTTCTTG...	1.725e^-4	0.939	INTRON sNPF-R
2L	6467716	2L_6467716_SNP [dm3] 2L_6467716_SNP [dm6]	T	C	1.727e^-4	0.939	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23235071	3R_23235071_DEL [dm3] 3R_27409349_DEL [dm6]	CCGCTTTTGC	C	1.729e^-4	0.939	INTRON side
2R	14574839	2R_14574839_SNP [dm3] 2R_18687334_SNP [dm6]	A	G	1.735e^-4	0.939	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17450881	2R_17450881_SNP [dm3] 2R_21563376_SNP [dm6]	C	G	1.741e^-4	0.939	INTRON CG10440
2R	14151612	2R_14151612_SNP [dm3] 2R_18264107_SNP [dm6]	C	T	1.743e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11704720	2L_11704720_INS [dm3] 2L_11704720_INS [dm6]	C	CCGAAC	1.751e^-4	0.939	INTERGENIC
3R	20096593	3R_20096593_SNP [dm3] 3R_24270871_SNP [dm6]	T	A	1.756e^-4	0.939	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	21544822	3R_21544822_SNP [dm3] 3R_25719100_SNP [dm6]	T	G	1.759e^-4	0.939	INTRON LpR2
2L	16428429	2L_16428429_SNP [dm3] 2L_16428429_SNP [dm6]	G	A	1.772e^-4	0.939	INTRON CG5888
2R	15287494	2R_15287494_SNP [dm3] 2R_19399989_SNP [dm6]	A	G	1.775e^-4	0.939	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
2L	1062860	2L_1062860_SNP [dm3] 2L_1062860_SNP [dm6]	C	T	1.779e^-4	0.939	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25350244	3R_25350244_SNP [dm3] 3R_29524522_SNP [dm6]	T	C	1.784e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12840609	2L_12840609_SNP [dm3] 2L_12840609_SNP [dm6]	C	T	1.785e^-4	0.939	UPSTREAM CR44970 & 1 other INTERGENIC
3R	17011139	3R_17011139_SNP [dm3] 3R_21185417_SNP [dm6]	A	T	1.788e^-4	0.939	INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8770846	3R_8770846_SNP [dm3] 3R_12945124_SNP [dm6]	A	G	1.791e^-4	0.939	INTERGENIC
2L	3831043	2L_3831043_SNP [dm3] 2L_3831043_SNP [dm6]	C	A	1.794e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22016180	2L_22016180_SNP [dm3] 2L_22016180_SNP [dm6]	A	G	1.800e^-4	0.939	SYNONYMOUS_CODING CG31693	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14327754	2R_14327754_SNP [dm3] 2R_18440249_SNP [dm6]	A	C	1.819e^-4	0.939	UTR_5_PRIME CG30118 UPSTREAM slim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	7058990	X_7058990_SNP [dm3] X_7164957_SNP [dm6]	A	G	1.823e^-4	0.939	INTRON CG9650
2L	8628141	2L_8628141_SNP [dm3] 2L_8628141_SNP [dm6]	A	G	1.826e^-4	0.939	INTRON Sema-1a
2L	5612209	2L_5612209_SNP [dm3] 2L_5612209_SNP [dm6]	T	C	1.827e^-4	0.939	INTRON CG14010
2L	9925967	2L_9925967_SNP [dm3] 2L_9925967_SNP [dm6]	G	A	1.829e^-4	0.939	INTRON CG42366
3R	6711257	3R_6711257_SNP [dm3] 3R_10885535_SNP [dm6]	A	C	1.837e^-4	0.939	UPSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19081746	3L_19081746_SNP [dm3] 3L_19088646_SNP [dm6]	G	A	1.840e^-4	0.939	INTERGENIC
X	7551654	X_7551654_DEL [dm3] X_7657621_DEL [dm6]	TGAAATCG	T	1.841e^-4	0.939	INTRON ct
3R	6710511	3R_6710511_SNP [dm3] 3R_10884789_SNP [dm6]	G	C	1.845e^-4	0.939	NON_SYNONYMOUS_CODING CG14696 UPSTREAM Leash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20250121	2R_20250121_SNP [dm3] 2R_24362598_SNP [dm6]	T	C	1.849e^-4	0.939	INTRON bs & 1 other	TF binding site mE1_TFBS_chinmo
3L	15351459	3L_15351459_SNP [dm3] 3L_15358359_SNP [dm6]	C	A	1.851e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20957165	X_20957165_SNP [dm3] X_21086138_SNP [dm6]	A	G	1.858e^-4	0.939	INTERGENIC
3L	16271437	3L_16271437_SNP [dm3] 3L_16278337_SNP [dm6]	G	A	1.861e^-4	0.939	DOWNSTREAM CG13050 & 1 other INTERGENIC
3L	5734911	3L_5734911_SNP [dm3] 3L_5741811_SNP [dm6]	T	C	1.862e^-4	0.939	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3R	7372662	3R_7372662_SNP [dm3] 3R_11546940_SNP [dm6]	C	G	1.865e^-4	0.939	INTERGENIC
3R	20668861	3R_20668861_SNP [dm3] 3R_24843139_SNP [dm6]	A	T	1.871e^-4	0.939	INTRON Esp
X	8022995	X_8022995_SNP [dm3] X_8128962_SNP [dm6]	A	G	1.871e^-4	0.939	UTR_5_PRIME cyr UPSTREAM CG2116 INTRON cyr	TF binding site BDTNP1_TFBS_dl
2L	8472987	2L_8472987_SNP [dm3] 2L_8472987_SNP [dm6]	G	A	1.877e^-4	0.939	INTRON d
2L	7366205	2L_7366205_SNP [dm3] 2L_7366205_SNP [dm6]	A	C	1.905e^-4	0.939	INTRON Wnt10
X	13577902	X_13577902_SNP [dm3] X_13683869_SNP [dm6]	C	A	1.906e^-4	0.939	SYNONYMOUS_CODING CG11158 DOWNSTREAM CG9940	TF binding site mE1_TFBS_sens
2L	7073391	2L_7073391_SNP [dm3] 2L_7073391_SNP [dm6]	A	C	1.919e^-4	0.939	INTRON Pvf2
X	10959933	X_10959933_SNP [dm3] X_11065900_SNP [dm6]	A	G	1.920e^-4	0.939	UPSTREAM CG15203 EXON CR45614
3L	10740572	3L_10740572_SNP [dm3] 3L_10747472_SNP [dm6]	A	G	1.922e^-4	0.939	INTERGENIC
X	3975685	X_3975685_SNP [dm3] X_4081652_SNP [dm6]	G	T	1.923e^-4	0.939	INTRON CG43689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14632137	2L_14632137_SNP [dm3] 2L_14632137_SNP [dm6]	T	C	1.929e^-4	0.939	INTRON osp
2R	4132291	2R_4132291_SNP [dm3] 2R_8244786_SNP [dm6]	G	T	1.935e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_z
3L	14086382	3L_14086382_SNP [dm3] 3L_14093282_SNP [dm6]	A	G	1.936e^-4	0.939	INTERGENIC
3L	10049318	3L_10049318_SNP [dm3] 3L_10056218_SNP [dm6]	G	A	1.941e^-4	0.939	INTRON dpr6
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	1.941e^-4	0.939	INTERGENIC
2L	12840619	2L_12840619_SNP [dm3] 2L_12840619_SNP [dm6]	C	T	1.948e^-4	0.939	UPSTREAM CR44970 & 1 other INTERGENIC
X	3707898	X_3707898_SNP [dm3] X_3813865_SNP [dm6]	G	A	1.948e^-4	0.939	INTRON ec
X	14108017	X_14108017_INS [dm3] X_14213984_INS [dm6]	C	CTT	1.961e^-4	0.939	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13171270	2R_13171270_SNP [dm3] 2R_17283765_SNP [dm6]	T	A	1.963e^-4	0.939	INTRON mbl
2R	20320817	2R_20320817_SNP [dm3] 2R_24433294_SNP [dm6]	G	A	1.964e^-4	0.939	UPSTREAM Pgam5-2 INTERGENIC
3R	23187826	3R_23187826_SNP [dm3] 3R_27362104_SNP [dm6]	C	T	1.982e^-4	0.939	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1681783	X_1681783_SNP [dm3] X_1787750_SNP [dm6]	G	T	1.984e^-4	0.939	UTR_3_PRIME Adar INTRON CG42666
3L	11838625	3L_11838625_SNP [dm3] 3L_11845525_SNP [dm6]	C	A	1.985e^-4	0.939	INTERGENIC
2R	17048350	2R_17048350_SNP [dm3] 2R_21160845_SNP [dm6]	A	G	1.988e^-4	0.939	UPSTREAM CG30389 & 1 other DOWNSTREAM tRNA:CR30206 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6984076	3R_6984076_SNP [dm3] 3R_11158354_SNP [dm6]	C	T	1.989e^-4	0.939	INTRON Ugt86Da
2L	7358637	2L_7358637_SNP [dm3] 2L_7358637_SNP [dm6]	A	T	1.991e^-4	0.939	INTERGENIC
3R	21384782	3R_21384782_SNP [dm3] 3R_25559060_SNP [dm6]	C	T	1.999e^-4	0.939	INTRON msi
3L	6027837	3L_6027837_SNP [dm3] 3L_6034737_SNP [dm6]	A	G	2.000e^-4	0.939	UPSTREAM yip7 & 1 other INTERGENIC
3R	14911790	3R_14911790_SNP [dm3] 3R_19086068_SNP [dm6]	C	T	2.002e^-4	0.939	INTRON cdi	TF binding site mE1_TFBS_sens
2R	16732349	2R_16732349_SNP [dm3] 2R_20844844_SNP [dm6]	A	T	2.005e^-4	0.939	INTERGENIC
2L	13098285	2L_13098285_SNP [dm3] 2L_13098285_SNP [dm6]	C	G	2.007e^-4	0.939	DOWNSTREAM CR45447 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1378764	3L_1378764_INS [dm3] 3L_1378764_INS [dm6]	T	TG	2.008e^-4	0.939	INTRON Ptp61F & 1 other
3L	478045	3L_478045_SNP [dm3] 3L_478045_SNP [dm6]	A	T	2.010e^-4	0.939	INTRON klar
3R	15829665	3R_15829665_SNP [dm3] 3R_20003943_SNP [dm6]	C	T	2.020e^-4	0.939	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
2R	13112725	2R_13112725_SNP [dm3] 2R_17225220_SNP [dm6]	A	C	2.039e^-4	0.939	INTRON mbl
3R	9738315	3R_9738315_SNP [dm3] 3R_13912593_SNP [dm6]	C	T	2.039e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	19081773	3L_19081773_SNP [dm3] 3L_19088673_SNP [dm6]	T	A	2.040e^-4	0.939	INTERGENIC
3R	6863742	3R_6863742_DEL [dm3] 3R_11038020_DEL [dm6]	TGCC	T	2.041e^-4	0.939	INTRON CG34114
2R	14720914	2R_14720914_SNP [dm3] 2R_18833409_SNP [dm6]	A	C	2.048e^-4	0.939	UTR_3_PRIME CG15098 DOWNSTREAM CG15082
X	14763215	X_14763215_INS [dm3] X_14869182_INS [dm6]	G	GCT	2.049e^-4	0.939	INTRON Flo2 & 1 other
2R	7043051	2R_7043051_SNP [dm3] 2R_11155546_SNP [dm6]	C	T	2.049e^-4	0.939	DOWNSTREAM CG13230 INTRON CG13229
X	1684235	X_1684235_SNP [dm3] X_1790202_SNP [dm6]	G	T	2.051e^-4	0.939	NON_SYNONYMOUS_CODING CG32806 INTRON CG42666
3L	13279181	3L_13279181_SNP [dm3] 3L_13286081_SNP [dm6]	A	G	2.053e^-4	0.939	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2L	8027305	2L_8027305_SNP [dm3] 2L_8027305_SNP [dm6]	T	C	2.063e^-4	0.939	SPLICE_SITE_REGION CG7367 DOWNSTREAM Tg INTRON CG7367
2R	12072463	2R_12072463_SNP [dm3] 2R_16184958_SNP [dm6]	A	C	2.070e^-4	0.939	UTR_3_PRIME Lis-1 DOWNSTREAM Lis-1 & 1 other	TF binding site mE1_TFBS_HSA
3R	7150335	3R_7150335_SNP [dm3] 3R_11324613_SNP [dm6]	G	A	2.072e^-4	0.939	INTERGENIC
3R	27007176	3R_27007176_SNP [dm3] 3R_31181454_SNP [dm6]	C	T	2.086e^-4	0.939	NON_SYNONYMOUS_CODING mesh
3R	8116731	3R_8116731_SNP [dm3] 3R_12291009_SNP [dm6]	A	G	2.090e^-4	0.939	INTRON svp
2R	17042713	2R_17042713_SNP [dm3] 2R_21155208_SNP [dm6]	C	A	2.096e^-4	0.939	SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5070721	2R_5070721_SNP [dm3] 2R_9183216_SNP [dm6]	C	G	2.103e^-4	0.939	UPSTREAM CR44284 INTRON ltd	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3R	26814212	3R_26814212_SNP [dm3] 3R_30988490_SNP [dm6]	T	G	2.109e^-4	0.939	DOWNSTREAM CG31008 INTRON 5-HT7
2L	12840620	2L_12840620_SNP [dm3] 2L_12840620_SNP [dm6]	C	T	2.116e^-4	0.939	UPSTREAM CR44970 & 1 other INTERGENIC
3R	5193222	3R_5193222_SNP [dm3] 3R_9367500_SNP [dm6]	A	C	2.134e^-4	0.939	NON_SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
3R	21322775	3R_21322775_SNP [dm3] 3R_25497053_SNP [dm6]	G	C	2.136e^-4	0.939	UPSTREAM CR44948 INTERGENIC
X	16219224	X_16219224_SNP [dm3] X_16325191_SNP [dm6]	T	A	2.144e^-4	0.939	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
X	1676536	X_1676536_SNP [dm3] X_1782503_SNP [dm6]	G	A	2.147e^-4	0.939	INTRON CG42666 & 1 other
X	3707584	X_3707584_SNP [dm3] X_3813551_SNP [dm6]	C	A	2.147e^-4	0.939	INTRON ec
3R	13918501	3R_13918501_SNP [dm3] 3R_18092779_SNP [dm6]	T	C	2.157e^-4	0.939	INTRON sr	TF binding site BDTNP1_TFBS_twi
3L	16271450	3L_16271450_SNP [dm3] 3L_16278350_SNP [dm6]	T	A	2.157e^-4	0.939	DOWNSTREAM CG13050 & 1 other INTERGENIC
2L	12760401	2L_12760401_DEL [dm3] 2L_12760401_DEL [dm6]	CAC	C	2.160e^-4	0.939	UTR_3_PRIME CG15483
3R	25258893	3R_25258893_SNP [dm3] 3R_29433171_SNP [dm6]	A	T	2.163e^-4	0.939	INTRON Ptp99A
3R	22844535	3R_22844535_SNP [dm3] 3R_27018813_SNP [dm6]	C	G	2.209e^-4	0.939	SYNONYMOUS_CODING CG17191 UPSTREAM CG17192 INTRON RYa-R
X	9006919	X_9006919_SNP [dm3] X_9112886_SNP [dm6]	T	A	2.219e^-4	0.939	INTRON AP-1gamma
3R	19170292	3R_19170292_SNP [dm3] 3R_23344570_SNP [dm6]	T	C	2.220e^-4	0.939	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10195529	2R_10195529_SNP [dm3] 2R_14308024_SNP [dm6]	C	T	2.231e^-4	0.939	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7073392	2L_7073392_SNP [dm3] 2L_7073392_SNP [dm6]	G	A	2.249e^-4	0.939	INTRON Pvf2
3L	12418517	3L_12418517_SNP [dm3] 3L_12425417_SNP [dm6]	A	G	2.252e^-4	0.939	SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad
2L	17503200	2L_17503200_SNP [dm3] 2L_17503200_SNP [dm6]	T	G	2.266e^-4	0.939	INTRON Dhc36C
3L	845123	3L_845123_SNP [dm3] 3L_845123_SNP [dm6]	G	A	2.271e^-4	0.939	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
3L	5980625	3L_5980625_SNP [dm3] 3L_5987525_SNP [dm6]	T	G	2.280e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	13491633	3L_13491633_SNP [dm3] 3L_13498533_SNP [dm6]	A	G	2.280e^-4	0.939	INTRON Tgi
2R	8555484	2R_8555484_SNP [dm3] 2R_12667979_SNP [dm6]	C	T	2.308e^-4	0.939	UTR_5_PRIME nemy
2L	6508218	2L_6508218_SNP [dm3] 2L_6508218_SNP [dm6]	G	T	2.308e^-4	0.939	INTRON CG31637 EXON CR44775
X	16219227	X_16219227_SNP [dm3] X_16325194_SNP [dm6]	T	C	2.310e^-4	0.939	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
3L	5980919	3L_5980919_DEL [dm3] 3L_5987819_DEL [dm6]	TGG	A	2.310e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	8671371	X_8671371_SNP [dm3] X_8777338_SNP [dm6]	A	G	2.315e^-4	0.939	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9997687	3R_9997687_SNP [dm3] 3R_14171965_SNP [dm6]	C	G	2.318e^-4	0.939	UTR_3_PRIME Dop1R1
2L	8873532	2L_8873532_SNP [dm3] 2L_8873532_SNP [dm6]	A	C	2.331e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10174086	3R_10174086_SNP [dm3] 3R_14348364_SNP [dm6]	T	C	2.332e^-4	0.939	INTRON NK7.1
2R	14184523	2R_14184523_SNP [dm3] 2R_18297018_SNP [dm6]	G	A	2.341e^-4	0.939	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3R	20992109	3R_20992109_SNP [dm3] 3R_25166387_SNP [dm6]	A	T	2.343e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6148232	2L_6148232_SNP [dm3] 2L_6148232_SNP [dm6]	A	T	2.343e^-4	0.939	INTERGENIC
2L	13908759	2L_13908759_SNP [dm3] 2L_13908759_SNP [dm6]	C	T	2.351e^-4	0.939	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad
3L	15351466	3L_15351466_SNP [dm3] 3L_15358366_SNP [dm6]	G	T	2.355e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5441489	3L_5441489_SNP [dm3] 3L_5448389_SNP [dm6]	A	C	2.363e^-4	0.939	INTERGENIC
X	11776390	X_11776390_SNP [dm3] X_11882357_SNP [dm6]	T	A	2.367e^-4	0.939	INTRON CG10353
2L	19159110	2L_19159110_SNP [dm3] 2L_19159110_SNP [dm6]	T	C	2.386e^-4	0.939	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11851302	2R_11851302_SNP [dm3] 2R_15963797_SNP [dm6]	G	C	2.402e^-4	0.939	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4899742	3L_4899742_SNP [dm3] 3L_4899742_SNP [dm6]	A	G	2.402e^-4	0.939	INTRON CG13704
3L	12158530	3L_12158530_SNP [dm3] 3L_12165430_SNP [dm6]	C	T	2.404e^-4	0.939	UTR_3_PRIME Rh7
2L	7259039	2L_7259039_SNP [dm3] 2L_7259039_SNP [dm6]	T	C	2.425e^-4	0.939	DOWNSTREAM CG31909 INTRON Wnt4
X	3140901	X_3140901_DEL [dm3] X_3246868_DEL [dm6]	TT	T	2.428e^-4	0.939	INTRON dnc
2R	14897935	2R_14897935_SNP [dm3] 2R_19010430_SNP [dm6]	T	C	2.434e^-4	0.939	INTERGENIC
3R	11578235	3R_11578235_SNP [dm3] 3R_15752513_SNP [dm6]	A	G	2.446e^-4	0.939	INTERGENIC
2L	6238737	2L_6238737_SNP [dm3] 2L_6238737_SNP [dm6]	G	T	2.447e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	4145017	2L_4145017_SNP [dm3] 2L_4145017_SNP [dm6]	C	A	2.447e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8639107	2L_8639107_SNP [dm3] 2L_8639107_SNP [dm6]	C	A	2.448e^-4	0.939	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8773670	3R_8773670_SNP [dm3] 3R_12947948_SNP [dm6]	T	C	2.450e^-4	0.939	INTERGENIC
2R	11772441	2R_11772441_SNP [dm3] 2R_15884936_SNP [dm6]	A	C	2.451e^-4	0.939	INTRON sli
2L	9651452	2L_9651452_SNP [dm3] 2L_9651452_SNP [dm6]	C	A	2.451e^-4	0.939	INTRON Apoltp
3L	899999	3L_899999_SNP [dm3] 3L_899999_SNP [dm6]	T	C	2.459e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	19119137	2L_19119137_SNP [dm3] 2L_19119137_SNP [dm6]	G	A	2.476e^-4	0.939	INTRON Ddc	regulatory region REDfly_CRMs
3R	21629872	3R_21629872_SNP [dm3] 3R_25804150_SNP [dm6]	A	C	2.477e^-4	0.939	INTERGENIC
2R	20239014	2R_20239014_SNP [dm3] 2R_24351491_SNP [dm6]	G	A	2.480e^-4	0.939	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21384778	3R_21384778_SNP [dm3] 3R_25559056_SNP [dm6]	G	A	2.489e^-4	0.939	INTRON msi
X	16012013	X_16012013_SNP [dm3] X_16117980_SNP [dm6]	C	T	2.495e^-4	0.939	DOWNSTREAM disco-r INTERGENIC
3L	12454833	3L_12454833_SNP [dm3] 3L_12461733_SNP [dm6]	T	A	2.496e^-4	0.939	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
2R	13780234	2R_13780234_SNP [dm3] 2R_17892729_SNP [dm6]	G	C	2.498e^-4	0.939	DOWNSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7358662	2L_7358662_SNP [dm3] 2L_7358662_SNP [dm6]	T	C	2.509e^-4	0.939	INTERGENIC
3L	12455021	3L_12455021_SNP [dm3] 3L_12461921_SNP [dm6]	T	C	2.515e^-4	0.939	DOWNSTREAM eyg INTERGENIC
2L	3665423	2L_3665423_SNP [dm3] 2L_3665423_SNP [dm6]	T	C	2.515e^-4	0.939	INTRON CG34340
3L	9390167	3L_9390167_SNP [dm3] 3L_9397067_SNP [dm6]	A	C	2.520e^-4	0.939	INTRON CG4080
3R	15446199	3R_15446199_SNP [dm3] 3R_19620477_SNP [dm6]	T	A	2.524e^-4	0.939	INTRON CG6231
2L	12672046	2L_12672046_SNP [dm3] 2L_12672046_SNP [dm6]	T	G	2.538e^-4	0.939	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	8989533	2L_8989533_SNP [dm3] 2L_8989533_SNP [dm6]	T	G	2.540e^-4	0.939	UTR_5_PRIME rost UPSTREAM rost
3L	2568040	3L_2568040_SNP [dm3] 3L_2568040_SNP [dm6]	C	T	2.543e^-4	0.939	INTRON msn
X	5061050	X_5061050_INS [dm3] X_5167017_INS [dm6]	T	TAT	2.544e^-4	0.939	INTRON rg & 1 other
X	18071166	X_18071166_SNP [dm3] X_18177133_SNP [dm6]	G	C	2.548e^-4	0.939	UPSTREAM Frq2 INTERGENIC
3R	5693456	3R_5693456_SNP [dm3] 3R_9867734_SNP [dm6]	C	T	2.549e^-4	0.939	UTR_5_PRIME Teh1	TF binding site BDTNP1_TFBS_dl
3L	944791	3L_944791_SNP [dm3] 3L_944791_SNP [dm6]	T	C	2.556e^-4	0.939	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2846128	3R_2846128_SNP [dm3] 3R_7020406_SNP [dm6]	T	G	2.560e^-4	0.939	INTERGENIC
2L	22056617	2L_22056617_SNP [dm3] 2L_22056617_SNP [dm6]	G	A	2.572e^-4	0.939	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1198883	X_1198883_SNP [dm3] X_1304850_SNP [dm6]	A	T	2.574e^-4	0.939	UPSTREAM DAAM INTRON DAAM
2L	10110244	2L_10110244_SNP [dm3] 2L_10110244_SNP [dm6]	T	G	2.581e^-4	0.939	INTRON CG44153 & 1 other
3R	21391836	3R_21391836_SNP [dm3] 3R_25566114_SNP [dm6]	G	A	2.596e^-4	0.939	INTRON msi
3L	4390136	3L_4390136_SNP [dm3] 3L_4390136_SNP [dm6]	C	T	2.598e^-4	0.939	INTRON slow
2R	20232537	2R_20232537_SNP [dm3] 2R_24345014_SNP [dm6]	A	C	2.600e^-4	0.939	INTRON bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6984075	3R_6984075_SNP [dm3] 3R_11158353_SNP [dm6]	C	T	2.605e^-4	0.939	INTRON Ugt86Da
3L	9390472	3L_9390472_SNP [dm3] 3L_9397372_SNP [dm6]	T	C	2.608e^-4	0.939	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
3R	15277872	3R_15277872_SNP [dm3] 3R_19452150_SNP [dm6]	A	G	2.616e^-4	0.939	INTRON CG31221
2L	19120026	2L_19120026_SNP [dm3] 2L_19120026_SNP [dm6]	C	A	2.617e^-4	0.939	UTR_5_PRIME Ddc INTRON Ddc	regulatory region REDfly_CRMs
3L	5441464	3L_5441464_SNP [dm3] 3L_5448364_SNP [dm6]	T	C	2.618e^-4	0.939	INTERGENIC
3L	1926422	3L_1926422_SNP [dm3] 3L_1926422_SNP [dm6]	A	G	2.621e^-4	0.939	DOWNSTREAM tRNA:CR32312 INTRON Dbx
3L	2657826	3L_2657826_SNP [dm3] 3L_2657826_SNP [dm6]	T	C	2.627e^-4	0.939	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	16244355	2R_16244355_SNP [dm3] 2R_20356850_SNP [dm6]	G	T	2.628e^-4	0.939	INTERGENIC
3L	11366539	3L_11366539_SNP [dm3] 3L_11373439_SNP [dm6]	T	C	2.629e^-4	0.939	INTERGENIC
X	5728363	X_5728363_SNP [dm3] X_5834330_SNP [dm6]	C	T	2.643e^-4	0.939	INTRON CG15765
3R	17288410	3R_17288410_SNP [dm3] 3R_21462688_SNP [dm6]	A	T	2.649e^-4	0.939	INTERGENIC
3R	9726798	3R_9726798_SNP [dm3] 3R_13901076_SNP [dm6]	G	A	2.649e^-4	0.939	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9743367	3R_9743367_SNP [dm3] 3R_13917645_SNP [dm6]	T	C	2.658e^-4	0.939	INTERGENIC
X	3957109	X_3957109_SNP [dm3] X_4063076_SNP [dm6]	G	A	2.663e^-4	0.939	INTERGENIC
2R	6111501	2R_6111501_SNP [dm3] 2R_10223996_SNP [dm6]	G	A	2.664e^-4	0.939	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
3R	6852352	3R_6852352_SNP [dm3] 3R_11026630_SNP [dm6]	C	T	2.693e^-4	0.939	INTRON CG34114
2L	17501126	2L_17501126_SNP [dm3] 2L_17501126_SNP [dm6]	G	A	2.698e^-4	0.939	UPSTREAM Dhc36C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	14947109	3R_14947109_SNP [dm3] 3R_19121387_SNP [dm6]	T	G	2.702e^-4	0.939	INTRON CG6040
3L	9488332	3L_9488332_SNP [dm3] 3L_9495232_SNP [dm6]	T	C	2.703e^-4	0.939	UTR_3_PRIME path
3R	22536544	3R_22536544_SNP [dm3] 3R_26710822_SNP [dm6]	C	A	2.705e^-4	0.939	INTRON amon
2R	14606959	2R_14606959_SNP [dm3] 2R_18719454_SNP [dm6]	C	A	2.710e^-4	0.939	UPSTREAM mir-4982 INTRON Hs3st-A
3L	13826932	3L_13826932_SNP [dm3] 3L_13833832_SNP [dm6]	G	T	2.714e^-4	0.939	INTERGENIC
X	3001500	X_3001500_SNP [dm3] X_3107467_SNP [dm6]	A	T	2.714e^-4	0.939	INTRON kirre
3L	1112572	3L_1112572_SNP [dm3] 3L_1112572_SNP [dm6]	A	T	2.725e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5903303	2L_5903303_SNP [dm3] 2L_5903303_SNP [dm6]	A	T	2.731e^-4	0.939	UTR_3_PRIME CG9021 DOWNSTREAM CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13916447	3L_13916447_SNP [dm3] 3L_13923347_SNP [dm6]	T	A	2.732e^-4	0.939	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
2L	22963943	2L_22963943_SNP [dm3] 2L_23071211_SNP [dm6]	C	A	2.741e^-4	0.939	DOWNSTREAM CR43242
2R	19397069	2R_19397069_SNP [dm3] 2R_23509546_SNP [dm6]	T	G	2.742e^-4	0.939	INTERGENIC
2L	11154951	2L_11154951_SNP [dm3] 2L_11154951_SNP [dm6]	G	A	2.752e^-4	0.939	INTRON CG6287
3L	7143261	3L_7143261_SNP [dm3] 3L_7150161_SNP [dm6]	T	A	2.757e^-4	0.939	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24655946	3R_24655946_SNP [dm3] 3R_28830224_SNP [dm6]	A	T	2.766e^-4	0.939	INTRON WASp
2R	10348467	2R_10348467_SNP [dm3] 2R_14460962_SNP [dm6]	T	A	2.783e^-4	0.939	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	3810765	2L_3810765_SNP [dm3] 2L_3810765_SNP [dm6]	C	G	2.785e^-4	0.939	DOWNSTREAM CG3407 & 1 other INTERGENIC
3R	21544829	3R_21544829_SNP [dm3] 3R_25719107_SNP [dm6]	A	G	2.787e^-4	0.939	INTRON LpR2
X	4714155	X_4714155_SNP [dm3] X_4820122_SNP [dm6]	C	T	2.791e^-4	0.939	INTERGENIC
3R	15277898	3R_15277898_SNP [dm3] 3R_19452176_SNP [dm6]	A	G	2.792e^-4	0.939	INTRON CG31221
X	18453557	X_18453557_SNP [dm3] X_18559524_SNP [dm6]	T	A	2.794e^-4	0.939	INTRON Bx
2L	2652986	2L_2652986_SNP [dm3] 2L_2652986_SNP [dm6]	G	A	2.794e^-4	0.939	UPSTREAM Prosbeta4R1 & 1 other INTERGENIC
2R	14351795	2R_14351795_DEL [dm3] 2R_18464290_DEL [dm6]	TT	T	2.797e^-4	0.939	INTRON CG30116
2L	7255397	2L_7255397_SNP [dm3] 2L_7255397_SNP [dm6]	G	A	2.800e^-4	0.939	DOWNSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	8671288	X_8671288_SNP [dm3] X_8777255_SNP [dm6]	C	A	2.801e^-4	0.939	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15288170	X_15288170_SNP [dm3] X_15394137_SNP [dm6]	C	T	2.807e^-4	0.939	NON_SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2R	15691156	2R_15691156_SNP [dm3] 2R_19803651_SNP [dm6]	G	A	2.810e^-4	0.939	DOWNSTREAM tRNA:K2:56EF INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9723587	3R_9723587_DEL [dm3] 3R_13897865_DEL [dm6]	TT	A	2.811e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	14637040	2R_14637040_DEL [dm3] 2R_18749535_DEL [dm6]	GG	G	2.812e^-4	0.939	INTRON Hs3st-A
3R	7826630	3R_7826630_SNP [dm3] 3R_12000908_SNP [dm6]	T	C	2.817e^-4	0.939	INTRON Tk & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	18866462	X_18866462_SNP [dm3] X_18972429_SNP [dm6]	C	T	2.845e^-4	0.939	INTRON CG43759
2R	8534555	2R_8534555_SNP [dm3] 2R_12647050_SNP [dm6]	G	C	2.858e^-4	0.939	INTRON CG8785
3L	14419065	3L_14419065_DEL [dm3] 3L_14425965_DEL [dm6]	TTTA	T	2.859e^-4	0.939	INTRON bbg	TF binding site mE1_TFBS_cnc
X	8750036	X_8750036_SNP [dm3] X_8856003_SNP [dm6]	C	T	2.860e^-4	0.939	INTRON CG12075
3L	12052652	3L_12052652_INS [dm3] 3L_12059552_INS [dm6]	A	AC	2.865e^-4	0.939	INTRON rols
2R	16244357	2R_16244357_SNP [dm3] 2R_20356852_SNP [dm6]	T	A	2.865e^-4	0.939	INTERGENIC
2R	20238975	2R_20238975_SNP [dm3] 2R_24351452_SNP [dm6]	A	G	2.874e^-4	0.939	UPSTREAM CG44812 DOWNSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15446210	3R_15446210_SNP [dm3] 3R_19620488_SNP [dm6]	A	T	2.877e^-4	0.939	INTRON CG6231
X	10120831	X_10120831_SNP [dm3] X_10226798_SNP [dm6]	C	T	2.881e^-4	0.939	START_GAINED CG34408 UTR_5_PRIME CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
X	9006441	X_9006441_INS [dm3] X_9112408_INS [dm6]	C	CTT	2.882e^-4	0.939	INTRON AP-1gamma
3L	6028215	3L_6028215_INS [dm3] 3L_6035115_INS [dm6]	T	TT	2.891e^-4	0.939	UPSTREAM yip7 & 1 other INTERGENIC
2L	3071323	2L_3071323_SNP [dm3] 2L_3071323_SNP [dm6]	T	C	2.893e^-4	0.939	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20249407	2R_20249407_INS [dm3] 2R_24361884_INS [dm6]	T	TT	2.894e^-4	0.939	INTRON bs & 1 other
2L	14417655	2L_14417655_SNP [dm3] 2L_14417655_SNP [dm6]	T	A	2.898e^-4	0.939	UPSTREAM Pburs INTERGENIC
X	11076098	X_11076098_SNP [dm3] X_11182065_SNP [dm6]	A	T	2.898e^-4	0.939	UPSTREAM CG15200 INTERGENIC
2R	18555546	2R_18555546_SNP [dm3] 2R_22668041_SNP [dm6]	C	T	2.915e^-4	0.939	SYNONYMOUS_CODING CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
3R	21630684	3R_21630684_SNP [dm3] 3R_25804962_SNP [dm6]	C	T	2.928e^-4	0.939	INTERGENIC
3R	11979601	3R_11979601_SNP [dm3] 3R_16153879_SNP [dm6]	G	A	2.951e^-4	0.939	INTERGENIC
X	20798830	X_20798830_SNP [dm3] X_20927803_SNP [dm6]	C	T	2.958e^-4	0.939	UPSTREAM shakB INTERGENIC
2L	6148119	2L_6148119_SNP [dm3] 2L_6148119_SNP [dm6]	T	C	2.961e^-4	0.939	INTERGENIC
X	7931093	X_7931093_SNP [dm3] X_8037060_SNP [dm6]	T	G	2.965e^-4	0.939	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2R	16726936	2R_16726936_SNP [dm3] 2R_20839431_SNP [dm6]	T	C	2.976e^-4	0.939	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15287490	2R_15287490_SNP [dm3] 2R_19399985_SNP [dm6]	A	G	2.993e^-4	0.939	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
2R	19161197	2R_19161197_SNP [dm3] 2R_23273674_SNP [dm6]	T	A	2.996e^-4	0.939	INTRON ord
3L	11479576	3L_11479576_SNP [dm3] 3L_11486476_SNP [dm6]	G	A	2.997e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	12139559	2R_12139559_SNP [dm3] 2R_16252054_SNP [dm6]	T	G	3.001e^-4	0.939	INTRON CngA
2R	17543196	2R_17543196_SNP [dm3] 2R_21655691_SNP [dm6]	T	C	3.004e^-4	0.939	SYNONYMOUS_CODING CG10082 DOWNSTREAM CR43786	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19161198	2R_19161198_SNP [dm3] 2R_23273675_SNP [dm6]	C	T	3.011e^-4	0.939	INTRON ord
2R	9556085	2R_9556085_SNP [dm3] 2R_13668580_SNP [dm6]	C	T	3.015e^-4	0.939	SYNONYMOUS_CODING CG18368 DOWNSTREAM CG13337 INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11520685	X_11520685_SNP [dm3] X_11626652_SNP [dm6]	G	C	3.022e^-4	0.939	INTRON Ptp10D
2L	20907017	2L_20907017_SNP [dm3] 2L_20907017_SNP [dm6]	T	A	3.033e^-4	0.939	INTRON sky & 1 other
3L	6288837	3L_6288837_SNP [dm3] 3L_6295737_SNP [dm6]	T	C	3.037e^-4	0.939	INTERGENIC
2L	3210445	2L_3210445_SNP [dm3] 2L_3210445_SNP [dm6]	C	G	3.037e^-4	0.939	UPSTREAM CR45336 INTERGENIC
3R	19894850	3R_19894850_SNP [dm3] 3R_24069128_SNP [dm6]	G	C	3.042e^-4	0.939	INTRON 4EHP
2R	20219756	2R_20219756_SNP [dm3] 2R_24332233_SNP [dm6]	G	A	3.045e^-4	0.939	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1644082	2R_1644082_SNP [dm3] 2R_5756577_SNP [dm6]	A	G	3.055e^-4	0.939	DOWNSTREAM l_2_09851 INTERGENIC
2R	5254531	2R_5254531_SNP [dm3] 2R_9367026_SNP [dm6]	T	C	3.057e^-4	0.939	INTRON CG13954
2R	9563326	2R_9563326_SNP [dm3] 2R_13675821_SNP [dm6]	A	G	3.088e^-4	0.939	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4600342	2L_4600342_SNP [dm3] 2L_4600342_SNP [dm6]	C	T	3.093e^-4	0.939	INTRON dp
3L	13835662	3L_13835662_SNP [dm3] 3L_13842562_SNP [dm6]	T	C	3.095e^-4	0.939	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
2L	13977366	2L_13977366_SNP [dm3] 2L_13977366_SNP [dm6]	C	T	3.103e^-4	0.939	SYNONYMOUS_CODING Cyp28a5 UPSTREAM NimC1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22565570	3R_22565570_SNP [dm3] 3R_26739848_SNP [dm6]	A	T	3.107e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19632461	2L_19632461_SNP [dm3] 2L_19632461_SNP [dm6]	C	T	3.114e^-4	0.939	INTRON Lar
2R	16244302	2R_16244302_SNP [dm3] 2R_20356797_SNP [dm6]	G	A	3.117e^-4	0.939	INTERGENIC
X	17398782	X_17398782_SNP [dm3] X_17504749_SNP [dm6]	C	G	3.119e^-4	0.939	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5980903	3L_5980903_SNP [dm3] 3L_5987803_SNP [dm6]	A	G	3.121e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10502735	2L_10502735_SNP [dm3] 2L_10502735_SNP [dm6]	T	C	3.124e^-4	0.939	INTRON Myo31DF
2R	19693091	2R_19693091_SNP [dm3] 2R_23805568_SNP [dm6]	G	A	3.126e^-4	0.939	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7619550	X_7619550_SNP [dm3] X_7725517_SNP [dm6]	T	A	3.132e^-4	0.939	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_sens
3R	24873149	3R_24873149_SNP [dm3] 3R_29047427_SNP [dm6]	G	A	3.137e^-4	0.939	UTR_3_PRIME Pkc98E DOWNSTREAM Pkc98E
3R	23183123	3R_23183123_SNP [dm3] 3R_27357401_SNP [dm6]	T	G	3.141e^-4	0.939	INTRON CG42534	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5063837	2R_5063837_SNP [dm3] 2R_9176332_SNP [dm6]	G	T	3.143e^-4	0.939	INTRON Rme-8
2R	19876528	2R_19876528_SNP [dm3] 2R_23989005_SNP [dm6]	G	C	3.144e^-4	0.939	NON_SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7579214	2L_7579214_SNP [dm3] 2L_7579214_SNP [dm6]	T	G	3.156e^-4	0.939	UPSTREAM RapGAP1 INTERGENIC
2L	14417663	2L_14417663_SNP [dm3] 2L_14417663_SNP [dm6]	A	C	3.166e^-4	0.939	UPSTREAM Pburs INTERGENIC
2L	2597211	2L_2597211_SNP [dm3] 2L_2597211_SNP [dm6]	A	C	3.172e^-4	0.939	INTERGENIC
3R	15277924	3R_15277924_SNP [dm3] 3R_19452202_SNP [dm6]	G	A	3.182e^-4	0.939	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	8088457	3R_8088457_SNP [dm3] 3R_12262735_SNP [dm6]	T	C	3.185e^-4	0.939	NON_SYNONYMOUS_CODING CG44037 INTRON svp
X	6537519	X_6537519_SNP [dm3] X_6643486_SNP [dm6]	G	A	3.201e^-4	0.939	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17262748	2R_17262748_SNP [dm3] 2R_21375243_SNP [dm6]	A	T	3.203e^-4	0.939	INTRON cv-2
2L	2652988	2L_2652988_SNP [dm3] 2L_2652988_SNP [dm6]	G	A	3.205e^-4	0.939	UPSTREAM Prosbeta4R1 & 1 other INTERGENIC
X	15819567	X_15819567_SNP [dm3] X_15925534_SNP [dm6]	T	A	3.215e^-4	0.939	DOWNSTREAM CG8916 INTRON Lcch3
3R	8094866	3R_8094866_SNP [dm3] 3R_12269144_SNP [dm6]	G	A	3.220e^-4	0.939	INTRON svp & 1 other
3L	12025618	3L_12025618_SNP [dm3] 3L_12032518_SNP [dm6]	C	T	3.222e^-4	0.939	UPSTREAM CG43993 INTRON rols
X	6929476	X_6929476_SNP [dm3] X_7035443_SNP [dm6]	T	G	3.231e^-4	0.939	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2R	16297578	2R_16297578_SNP [dm3] 2R_20410073_SNP [dm6]	C	A	3.246e^-4	0.939	INTERGENIC
3L	18649568	3L_18649568_SNP [dm3] 3L_18656468_SNP [dm6]	A	C	3.248e^-4	0.939	INTRON MYPT-75D
3L	2657824	3L_2657824_SNP [dm3] 3L_2657824_SNP [dm6]	A	T	3.256e^-4	0.939	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	3126645	2L_3126645_SNP [dm3] 2L_3126645_SNP [dm6]	G	A	3.272e^-4	0.939	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19645671	2L_19645671_SNP [dm3] 2L_19645671_SNP [dm6]	G	A	3.278e^-4	0.939	INTRON Lar
2L	9488593	2L_9488593_SNP [dm3] 2L_9488593_SNP [dm6]	T	C	3.278e^-4	0.939	INTERGENIC
2L	5579549	2L_5579549_DEL [dm3] 2L_5579549_DEL [dm6]	TTTAGAAAACT...	T	3.280e^-4	0.939	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12063008	3L_12063008_SNP [dm3] 3L_12069908_SNP [dm6]	T	G	3.281e^-4	0.939	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	7826603	3L_7826603_SNP [dm3] 3L_7833503_SNP [dm6]	A	G	3.287e^-4	0.939	UPSTREAM Pdp1 INTRON Pdp1
2R	16126116	2R_16126116_SNP [dm3] 2R_20238611_SNP [dm6]	G	T	3.289e^-4	0.939	NON_SYNONYMOUS_CODING CG13869 UTR_3_PRIME CG11099
3L	7996579	3L_7996579_SNP [dm3] 3L_8003479_SNP [dm6]	A	C	3.293e^-4	0.939	INTRON nmo
3R	10401884	3R_10401884_SNP [dm3] 3R_14576162_SNP [dm6]	A	T	3.296e^-4	0.939	UPSTREAM CG7987 DOWNSTREAM CG44094 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15333153	2L_15333153_SNP [dm3] 2L_15333153_SNP [dm6]	A	C	3.299e^-4	0.939	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7358691	2L_7358691_SNP [dm3] 2L_7358691_SNP [dm6]	T	G	3.306e^-4	0.939	INTERGENIC
2R	20320843	2R_20320843_SNP [dm3] 2R_24433320_SNP [dm6]	A	G	3.308e^-4	0.939	UPSTREAM Pgam5-2 INTERGENIC
X	9768926	X_9768926_SNP [dm3] X_9874893_SNP [dm6]	C	T	3.308e^-4	0.939	SYNONYMOUS_CODING CG15247 UPSTREAM CG32695	TF binding site mE1_TFBS_chinmo
3L	13528509	3L_13528509_SNP [dm3] 3L_13535409_SNP [dm6]	C	T	3.309e^-4	0.939	UTR_3_PRIME bru-3 DOWNSTREAM bru-3	TF binding site mE1_TFBS_kn
3L	9390423	3L_9390423_SNP [dm3] 3L_9397323_SNP [dm6]	T	C	3.312e^-4	0.939	INTRON CG4080
2R	9576151	2R_9576151_SNP [dm3] 2R_13688646_SNP [dm6]	A	C	3.316e^-4	0.939	INTRON fas
X	2684489	X_2684489_SNP [dm3] X_2790456_SNP [dm6]	T	A	3.339e^-4	0.939	UTR_5_PRIME CG32795 UPSTREAM CG32795 DOWNSTREAM w INTRON kirre	insulator FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14619507	2L_14619507_DEL [dm3] 2L_14619507_DEL [dm6]	AA	A	3.340e^-4	0.939	DOWNSTREAM Adhr & 1 other INTRON osp
2R	6810455	2R_6810455_SNP [dm3] 2R_10922950_SNP [dm6]	T	C	3.341e^-4	0.939	INTERGENIC
3L	19079686	3L_19079686_SNP [dm3] 3L_19086586_SNP [dm6]	A	C	3.345e^-4	0.939	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12671529	2L_12671529_DEL [dm3] 2L_12671529_DEL [dm6]	TT	T	3.349e^-4	0.939	INTRON pdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	10045821	3R_10045821_SNP [dm3] 3R_14220099_SNP [dm6]	A	G	3.350e^-4	0.939	SYNONYMOUS_CODING CG31326 DOWNSTREAM CG33109
X	16925949	X_16925949_SNP [dm3] X_17031916_SNP [dm6]	T	A	3.357e^-4	0.939	INTRON CG45002
2L	16428590	2L_16428590_INS [dm3] 2L_16428590_INS [dm6]	C	TATGTA	3.358e^-4	0.939	INTRON CG5888
3L	17401771	3L_17401771_SNP [dm3] 3L_17408671_SNP [dm6]	C	G	3.359e^-4	0.939	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7731178	3R_7731178_SNP [dm3] 3R_11905456_SNP [dm6]	T	A	3.363e^-4	0.939	INTRON Cad87A
3R	12947515	3R_12947515_SNP [dm3] 3R_17121793_SNP [dm6]	A	G	3.366e^-4	0.939	UTR_3_PRIME CG42779 DOWNSTREAM CG34278 INTRON cher	TF binding site mE1_TFBS_inv
X	2870817	X_2870817_SNP [dm3] X_2976784_SNP [dm6]	T	G	3.368e^-4	0.939	INTRON kirre
2R	13597064	2R_13597064_SNP [dm3] 2R_17709559_SNP [dm6]	T	A	3.374e^-4	0.939	UPSTREAM CG6424 INTRON CG6424
3R	8085194	3R_8085194_SNP [dm3] 3R_12259472_SNP [dm6]	G	A	3.385e^-4	0.939	INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_da
X	9006177	X_9006177_SNP [dm3] X_9112144_SNP [dm6]	G	A	3.385e^-4	0.939	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_twi
2R	17360353	2R_17360353_SNP [dm3] 2R_21472848_SNP [dm6]	C	T	3.391e^-4	0.939	INTRON Sdc
3L	7857088	3L_7857088_SNP [dm3] 3L_7863988_SNP [dm6]	T	G	3.393e^-4	0.939	INTRON Pdp1
3L	18402003	3L_18402003_SNP [dm3] 3L_18408903_SNP [dm6]	C	T	3.404e^-4	0.939	INTERGENIC
3R	14152517	3R_14152517_SNP [dm3] 3R_18326795_SNP [dm6]	T	C	3.405e^-4	0.939	INTRON CG31235
2R	4412630	2R_4412630_SNP [dm3] 2R_8525125_SNP [dm6]	T	A	3.413e^-4	0.939	INTRON mtt
2L	21976917	2L_21976917_SNP [dm3] 2L_21976917_SNP [dm6]	T	C	3.414e^-4	0.939	INTERGENIC
X	3707640	X_3707640_SNP [dm3] X_3813607_SNP [dm6]	C	T	3.430e^-4	0.939	INTRON ec
X	7105424	X_7105424_SNP [dm3] X_7211391_SNP [dm6]	T	C	3.434e^-4	0.939	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9925987	2L_9925987_SNP [dm3] 2L_9925987_SNP [dm6]	A	C	3.434e^-4	0.939	INTRON CG42366
2R	11402253	2R_11402253_SNP [dm3] 2R_15514748_SNP [dm6]	G	A	3.440e^-4	0.939	SYNONYMOUS_CODING GalNAc-T1
2L	1456568	2L_1456568_SNP [dm3] 2L_1456568_SNP [dm6]	C	T	3.443e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24415167	3R_24415167_SNP [dm3] 3R_28589445_SNP [dm6]	C	G	3.443e^-4	0.939	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10731933	X_10731933_SNP [dm3] X_10837900_SNP [dm6]	T	C	3.447e^-4	0.939	INTRON sbr
3L	12442172	3L_12442172_SNP [dm3] 3L_12449072_SNP [dm6]	T	C	3.447e^-4	0.939	INTERGENIC
2L	11704758	2L_11704758_SNP [dm3] 2L_11704758_SNP [dm6]	G	A	3.450e^-4	0.939	INTERGENIC
2L	2652931	2L_2652931_SNP [dm3] 2L_2652931_SNP [dm6]	T	A	3.453e^-4	0.939	UPSTREAM Prosbeta4R1 & 1 other INTERGENIC
X	20447151	X_20447151_DEL [dm3] X_20576124_DEL [dm6]	AGGATCAATAGCCAAGTCGA...	A	3.454e^-4	0.939	INTERGENIC	transposable element FlyBase
3L	18685234	3L_18685234_SNP [dm3] 3L_18692134_SNP [dm6]	T	A	3.457e^-4	0.939	INTERGENIC
2R	13936365	2R_13936365_INS [dm3] 2R_18048860_INS [dm6]	T	TAATA	3.457e^-4	0.939	UTR_3_PRIME CG34005 & 1 other DOWNSTREAM CG14495 & 1 other	TF binding site mE1_TFBS_bab1
2L	14570672	2L_14570672_SNP [dm3] 2L_14570672_SNP [dm6]	A	T	3.462e^-4	0.939	INTERGENIC
2L	19113813	2L_19113813_SNP [dm3] 2L_19113813_SNP [dm6]	T	C	3.463e^-4	0.939	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19166449	2L_19166449_SNP [dm3] 2L_19166449_SNP [dm6]	A	G	3.467e^-4	0.939	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	13143947	X_13143947_SNP [dm3] X_13249914_SNP [dm6]	T	A	3.471e^-4	0.939	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3L	14583365	3L_14583365_SNP [dm3] 3L_14590265_SNP [dm6]	G	T	3.474e^-4	0.939	INTRON HGTX
3L	10361908	3L_10361908_SNP [dm3] 3L_10368808_SNP [dm6]	G	T	3.488e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7255404	2L_7255404_SNP [dm3] 2L_7255404_SNP [dm6]	G	T	3.490e^-4	0.939	DOWNSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	1679506	X_1679506_SNP [dm3] X_1785473_SNP [dm6]	G	T	3.492e^-4	0.939	UTR_3_PRIME Adar INTRON CG42666
3L	14766523	3L_14766523_SNP [dm3] 3L_14773423_SNP [dm6]	T	C	3.492e^-4	0.939	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24657991	3R_24657991_SNP [dm3] 3R_28832269_SNP [dm6]	G	C	3.501e^-4	0.939	UPSTREAM WASp DOWNSTREAM Apc INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7143308	3L_7143308_SNP [dm3] 3L_7150208_SNP [dm6]	C	G	3.503e^-4	0.939	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15034407	3R_15034407_SNP [dm3] 3R_19208685_SNP [dm6]	G	A	3.505e^-4	0.939	INTERGENIC
2L	18746803	2L_18746803_SNP [dm3] 2L_18746803_SNP [dm6]	T	C	3.508e^-4	0.939	INTERGENIC
X	21085623	X_21085623_SNP [dm3] X_21214596_SNP [dm6]	T	C	3.509e^-4	0.939	INTRON CG32521
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	3.513e^-4	0.939	INTRON Mhc
3R	25525122	3R_25525122_SNP [dm3] 3R_29699400_SNP [dm6]	T	C	3.517e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23604540	3R_23604540_SNP [dm3] 3R_27778818_SNP [dm6]	C	A	3.521e^-4	0.939	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	9192943	3L_9192943_SNP [dm3] 3L_9199843_SNP [dm6]	G	A	3.531e^-4	0.939	INTERGENIC
3R	8771034	3R_8771034_SNP [dm3] 3R_12945312_SNP [dm6]	A	C	3.532e^-4	0.939	INTERGENIC
2R	14955093	2R_14955093_SNP [dm3] 2R_19067588_SNP [dm6]	A	T	3.539e^-4	0.939	INTRON 5-HT1A
2R	17048116	2R_17048116_SNP [dm3] 2R_21160611_SNP [dm6]	C	A	3.539e^-4	0.939	UPSTREAM CG30389 & 1 other DOWNSTREAM tRNA:CR30206 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	16732644	2R_16732644_SNP [dm3] 2R_20845139_SNP [dm6]	T	C	3.540e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9484981	3L_9484981_INS [dm3] 3L_9491881_INS [dm6]	T	TT	3.551e^-4	0.939	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8639111	2L_8639111_SNP [dm3] 2L_8639111_SNP [dm6]	C	T	3.555e^-4	0.939	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8735856	3R_8735856_SNP [dm3] 3R_12910134_SNP [dm6]	T	G	3.566e^-4	0.939	UTR_3_PRIME CG10909
2R	16595165	2R_16595165_SNP [dm3] 2R_20707660_SNP [dm6]	C	A	3.570e^-4	0.939	INTRON dpr
3R	21026873	3R_21026873_SNP [dm3] 3R_25201151_SNP [dm6]	T	A	3.574e^-4	0.939	INTRON Cad96Ca & 1 other
3R	22257438	3R_22257438_INS [dm3] 3R_26431716_INS [dm6]	G	GAG	3.582e^-4	0.939	INTERGENIC
3R	14912831	3R_14912831_SNP [dm3] 3R_19087109_SNP [dm6]	C	T	3.608e^-4	0.939	INTRON cdi	TF binding site mE1_TFBS_chinmo
2L	15327854	2L_15327854_SNP [dm3] 2L_15327854_SNP [dm6]	G	C	3.611e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12193390	3L_12193390_SNP [dm3] 3L_12200290_SNP [dm6]	T	A	3.615e^-4	0.939	DOWNSTREAM Adk1 INTERGENIC
X	10009270	X_10009270_SNP [dm3] X_10115237_SNP [dm6]	T	G	3.616e^-4	0.939	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	2032897	3R_2032897_SNP [dm3] 3R_6207175_SNP [dm6]	G	A	3.616e^-4	0.939	SYNONYMOUS_CODING Osi24	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14955652	2R_14955652_SNP [dm3] 2R_19068147_SNP [dm6]	A	T	3.617e^-4	0.939	INTRON 5-HT1A
2L	19930468	2L_19930468_SNP [dm3] 2L_19930468_SNP [dm6]	A	G	3.617e^-4	0.939	INTRON sick
X	20826196	X_20826196_SNP [dm3] X_20955169_SNP [dm6]	A	G	3.621e^-4	0.939	INTERGENIC
2L	19874885	2L_19874885_SNP [dm3] 2L_19874885_SNP [dm6]	A	C	3.625e^-4	0.939	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20846926	3R_20846926_SNP [dm3] 3R_25021204_SNP [dm6]	G	A	3.628e^-4	0.939	INTRON tnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7857070	3L_7857070_SNP [dm3] 3L_7863970_SNP [dm6]	C	A	3.637e^-4	0.939	INTRON Pdp1
2L	3566457	2L_3566457_SNP [dm3] 2L_3566457_SNP [dm6]	T	C	3.642e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3812187	2L_3812187_SNP [dm3] 2L_3812187_SNP [dm6]	G	A	3.643e^-4	0.939	SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	16261776	3L_16261776_SNP [dm3] 3L_16268676_SNP [dm6]	C	T	3.644e^-4	0.939	UPSTREAM CG4950 & 1 other INTERGENIC
2L	9964083	2L_9964083_SNP [dm3] 2L_9964083_SNP [dm6]	T	A	3.657e^-4	0.939	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
3R	2350124	3R_2350124_SNP [dm3] 3R_6524402_SNP [dm6]	C	G	3.658e^-4	0.939	INTERGENIC
2R	19694288	2R_19694288_SNP [dm3] 2R_23806765_SNP [dm6]	G	A	3.667e^-4	0.939	SYNONYMOUS_CODING Ssrp UPSTREAM CG13561 DOWNSTREAM CG5539	TF binding site mE1_TFBS_cad
3L	9591495	3L_9591495_SNP [dm3] 3L_9598395_SNP [dm6]	C	A	3.669e^-4	0.939	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
3R	23469776	3R_23469776_SNP [dm3] 3R_27644054_SNP [dm6]	G	T	3.669e^-4	0.939	INTRON tau
X	1665180	X_1665180_SNP [dm3] X_1771147_SNP [dm6]	C	G	3.678e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6929470	X_6929470_SNP [dm3] X_7035437_SNP [dm6]	A	C	3.679e^-4	0.939	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	3553785	2L_3553785_SNP [dm3] 2L_3553785_SNP [dm6]	T	A	3.680e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15351488	3L_15351488_SNP [dm3] 3L_15358388_SNP [dm6]	T	G	3.684e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12671830	2L_12671830_SNP [dm3] 2L_12671830_SNP [dm6]	T	G	3.686e^-4	0.939	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2L	17501000	2L_17501000_SNP [dm3] 2L_17501000_SNP [dm6]	G	C	3.686e^-4	0.939	UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	1679497	X_1679497_SNP [dm3] X_1785464_SNP [dm6]	A	T	3.688e^-4	0.939	UTR_3_PRIME Adar INTRON CG42666
2R	17448283	2R_17448283_SNP [dm3] 2R_21560778_SNP [dm6]	C	T	3.696e^-4	0.939	UTR_3_PRIME CG10440 DOWNSTREAM Egfr
X	14805573	X_14805573_SNP [dm3] X_14911540_SNP [dm6]	G	A	3.696e^-4	0.939	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
3L	7048616	3L_7048616_SNP [dm3] 3L_7055516_SNP [dm6]	A	T	3.696e^-4	0.939	INTERGENIC
3R	15034474	3R_15034474_SNP [dm3] 3R_19208752_SNP [dm6]	A	G	3.699e^-4	0.939	INTERGENIC
2R	9146235	2R_9146235_SNP [dm3] 2R_13258730_SNP [dm6]	A	T	3.702e^-4	0.939	DOWNSTREAM CG10799 INTERGENIC
3L	12194261	3L_12194261_SNP [dm3] 3L_12201161_SNP [dm6]	G	T	3.703e^-4	0.939	INTRON Adk1
2R	14452860	2R_14452860_SNP [dm3] 2R_18565355_SNP [dm6]	C	T	3.715e^-4	0.939	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13495728	3L_13495728_SNP [dm3] 3L_13502628_SNP [dm6]	A	T	3.721e^-4	0.939	UPSTREAM Spt20 DOWNSTREAM Tgi INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	19623567	3R_19623567_SNP [dm3] 3R_23797845_SNP [dm6]	C	T	3.744e^-4	0.939	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1215440	X_1215440_SNP [dm3] X_1321407_SNP [dm6]	C	A	3.745e^-4	0.939	INTRON DAAM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19648347	2L_19648347_SNP [dm3] 2L_19648347_SNP [dm6]	A	C	3.758e^-4	0.939	INTRON Lar
3L	7857139	3L_7857139_SNP [dm3] 3L_7864039_SNP [dm6]	C	T	3.768e^-4	0.939	INTRON Pdp1
3L	6751299	3L_6751299_SNP [dm3] 3L_6758199_SNP [dm6]	G	A	3.771e^-4	0.939	INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20907031	2L_20907031_SNP [dm3] 2L_20907031_SNP [dm6]	C	T	3.786e^-4	0.939	INTRON sky & 1 other
2L	19942334	2L_19942334_SNP [dm3] 2L_19942334_SNP [dm6]	C	T	3.795e^-4	0.939	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7356918	2L_7356918_SNP [dm3] 2L_7356918_SNP [dm6]	C	T	3.798e^-4	0.939	INTERGENIC
2R	8129492	2R_8129492_SNP [dm3] 2R_12241987_SNP [dm6]	A	C	3.809e^-4	0.939	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	2567934	3L_2567934_SNP [dm3] 3L_2567934_SNP [dm6]	G	A	3.809e^-4	0.939	INTRON msn	regulatory region REDfly_CRMs
X	20731910	X_20731910_SNP [dm3] X_20860883_SNP [dm6]	C	G	3.814e^-4	0.939	INTRON shakB
2R	20312741	2R_20312741_SNP [dm3] 2R_24425218_SNP [dm6]	A	G	3.819e^-4	0.939	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19595186	2R_19595186_SNP [dm3] 2R_23707663_SNP [dm6]	G	A	3.820e^-4	0.939	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19300234	X_19300234_SNP [dm3] X_19406201_SNP [dm6]	T	C	3.821e^-4	0.939	INTRON kek5
3L	12568879	3L_12568879_SNP [dm3] 3L_12575779_SNP [dm6]	C	T	3.824e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10728008	3L_10728008_SNP [dm3] 3L_10734908_SNP [dm6]	G	A	3.826e^-4	0.939	INTERGENIC
X	20803332	X_20803332_SNP [dm3] X_20932305_SNP [dm6]	A	G	3.827e^-4	0.939	SYNONYMOUS_CODING CG11227 UTR_3_PRIME CG11227	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19876377	2R_19876377_SNP [dm3] 2R_23988854_SNP [dm6]	A	C	3.829e^-4	0.939	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12454835	3L_12454835_SNP [dm3] 3L_12461735_SNP [dm6]	G	A	3.830e^-4	0.939	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
3L	3865251	3L_3865251_SNP [dm3] 3L_3865251_SNP [dm6]	G	A	3.836e^-4	0.939	UPSTREAM CR45379 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14725003	X_14725003_SNP [dm3] X_14830970_SNP [dm6]	T	A	3.846e^-4	0.939	INTRON CG14408	TF binding site mE1_TFBS_cad
2L	19942253	2L_19942253_SNP [dm3] 2L_19942253_SNP [dm6]	C	G	3.853e^-4	0.939	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
2L	14581733	2L_14581733_SNP [dm3] 2L_14581733_SNP [dm6]	G	A	3.856e^-4	0.939	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23966190	3R_23966190_SNP [dm3] 3R_28140468_SNP [dm6]	G	A	3.858e^-4	0.939	INTERGENIC
3R	11368434	3R_11368434_SNP [dm3] 3R_15542712_SNP [dm6]	A	G	3.881e^-4	0.939	UPSTREAM CG18519 DOWNSTREAM CG6045 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14722542	2R_14722542_SNP [dm3] 2R_18835037_SNP [dm6]	A	G	3.894e^-4	0.939	UPSTREAM CG15083 & 1 other INTERGENIC
2L	3715081	2L_3715081_SNP [dm3] 2L_3715081_SNP [dm6]	C	T	3.896e^-4	0.939	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17048645	3L_17048645_SNP [dm3] 3L_17055545_SNP [dm6]	A	G	3.899e^-4	0.939	UPSTREAM CG7724 DOWNSTREAM rogdi INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	18394415	3L_18394415_SNP [dm3] 3L_18401315_SNP [dm6]	T	C	3.901e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2R	17291634	2R_17291634_SNP [dm3] 2R_21404129_SNP [dm6]	C	T	3.902e^-4	0.939	INTRON Sdc
3L	16028041	3L_16028041_DEL [dm3] 3L_16034941_DEL [dm6]	GCAGT	G	3.911e^-4	0.939	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16149045	X_16149045_SNP [dm3] X_16255012_SNP [dm6]	C	A	3.927e^-4	0.939	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	3.928e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	20058631	3L_20058631_SNP [dm3] 3L_20065531_SNP [dm6]	T	G	3.929e^-4	0.939	INTRON sNPF-R
2L	3665408	2L_3665408_SNP [dm3] 2L_3665408_SNP [dm6]	T	C	3.931e^-4	0.939	INTRON CG34340
2L	1320820	2L_1320820_SNP [dm3] 2L_1320820_SNP [dm6]	C	T	3.933e^-4	0.939	INTERGENIC
2L	8011717	2L_8011717_SNP [dm3] 2L_8011717_SNP [dm6]	T	C	3.939e^-4	0.939	UTR_5_PRIME Tg
2R	8955067	2R_8955067_SNP [dm3] 2R_13067562_SNP [dm6]	G	A	3.946e^-4	0.939	INTRON Drl-2	TF binding site mE1_TFBS_chinmo
3L	18110445	3L_18110445_SNP [dm3] 3L_18117345_SNP [dm6]	A	T	3.947e^-4	0.939	UTR_3_PRIME CG32195 INTRON CG7341
3R	14917774	3R_14917774_SNP [dm3] 3R_19092052_SNP [dm6]	T	A	3.963e^-4	0.939	INTRON cdi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8088451	3R_8088451_SNP [dm3] 3R_12262729_SNP [dm6]	T	C	3.975e^-4	0.939	NON_SYNONYMOUS_CODING CG44037 INTRON svp
2R	11454829	2R_11454829_SNP [dm3] 2R_15567324_SNP [dm6]	C	T	3.983e^-4	0.939	SYNONYMOUS_CODING Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8516389	2R_8516389_SNP [dm3] 2R_12628884_SNP [dm6]	A	G	3.989e^-4	0.939	UTR_3_PRIME muskelin DOWNSTREAM muskelin & 1 other
2L	21996376	2L_21996376_SNP [dm3] 2L_21996376_SNP [dm6]	A	T	3.993e^-4	0.939	INTERGENIC
3R	25744487	3R_25744487_SNP [dm3] 3R_29918765_SNP [dm6]	G	C	3.996e^-4	0.939	INTRON trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12074077	3L_12074077_SNP [dm3] 3L_12080977_SNP [dm6]	T	A	3.997e^-4	0.939	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8897904	2R_8897904_SNP [dm3] 2R_13010399_SNP [dm6]	T	G	4.009e^-4	0.939	INTERGENIC
2R	17943946	2R_17943946_SNP [dm3] 2R_22056441_SNP [dm6]	A	G	4.019e^-4	0.939	DOWNSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19937661	2L_19937661_SNP [dm3] 2L_19937661_SNP [dm6]	A	G	4.024e^-4	0.939	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18016405	2R_18016405_SNP [dm3] 2R_22128900_SNP [dm6]	G	A	4.026e^-4	0.939	INTRON NtR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19923056	2R_19923056_SNP [dm3] 2R_24035533_SNP [dm6]	T	C	4.027e^-4	0.939	NON_SYNONYMOUS_CODING MAN1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10959718	X_10959718_SNP [dm3] X_11065685_SNP [dm6]	C	G	4.037e^-4	0.939	UPSTREAM CR45614 & 1 other INTERGENIC
2R	12778518	2R_12778518_DEL [dm3] 2R_16891013_DEL [dm6]	TGCAA	T	4.039e^-4	0.939	INTRON CG8910	TF binding site BDTNP1_TFBS_dl
2L	6245919	2L_6245919_SNP [dm3] 2L_6245919_SNP [dm6]	C	T	4.049e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7826631	3R_7826631_SNP [dm3] 3R_12000909_SNP [dm6]	T	C	4.058e^-4	0.939	INTRON Tk & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12074151	3L_12074151_SNP [dm3] 3L_12081051_SNP [dm6]	C	T	4.066e^-4	0.939	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4728025	3L_4728025_SNP [dm3] 3L_4728025_SNP [dm6]	G	T	4.070e^-4	0.939	INTRON RhoGEF64C
2L	20861133	2L_20861133_SNP [dm3] 2L_20861133_SNP [dm6]	C	T	4.080e^-4	0.939	DOWNSTREAM CG9336 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11852022	3L_11852022_SNP [dm3] 3L_11858922_SNP [dm6]	T	G	4.082e^-4	0.939	INTRON CG44837
3L	7272080	3L_7272080_SNP [dm3] 3L_7278980_SNP [dm6]	G	A	4.087e^-4	0.939	INTRON unc-13-4A
3L	2655019	3L_2655019_SNP [dm3] 3L_2655019_SNP [dm6]	T	C	4.093e^-4	0.939	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2L	8005161	2L_8005161_SNP [dm3] 2L_8005161_SNP [dm6]	C	G	4.093e^-4	0.939	SYNONYMOUS_CODING Spn28Dc UPSTREAM Wwox	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9964079	2L_9964079_SNP [dm3] 2L_9964079_SNP [dm6]	G	A	4.101e^-4	0.939	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	4.124e^-4	0.939	INTRON Mhc
X	9768224	X_9768224_INS [dm3] X_9874191_INS [dm6]	A	AGTACTATA	4.127e^-4	0.939	UPSTREAM CG32695 DOWNSTREAM CG15247 INTERGENIC
3L	19006825	3L_19006825_SNP [dm3] 3L_19013725_SNP [dm6]	C	A	4.134e^-4	0.939	INTRON nkd
3R	5663436	3R_5663436_SNP [dm3] 3R_9837714_SNP [dm6]	C	T	4.136e^-4	0.939	INTRON Teh1
3L	18646131	3L_18646131_SNP [dm3] 3L_18653031_SNP [dm6]	A	T	4.142e^-4	0.939	INTRON MYPT-75D
X	6471175	X_6471175_SNP [dm3] X_6577142_SNP [dm6]	T	G	4.147e^-4	0.939	INTRON CG34417	TF binding site mE1_TFBS_HSA
2R	17448203	2R_17448203_SNP [dm3] 2R_21560698_SNP [dm6]	C	A	4.153e^-4	0.939	UTR_3_PRIME CG10440 DOWNSTREAM Egfr
3R	15849865	3R_15849865_SNP [dm3] 3R_20024143_SNP [dm6]	C	T	4.155e^-4	0.939	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
X	6447057	X_6447057_SNP [dm3] X_6553024_SNP [dm6]	A	G	4.158e^-4	0.939	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3260601	2R_3260601_SNP [dm3] 2R_7373096_SNP [dm6]	G	T	4.168e^-4	0.939	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17163069	2R_17163069_SNP [dm3] 2R_21275564_SNP [dm6]	A	G	4.175e^-4	0.939	INTRON Rgk3
2L	7159879	2L_7159879_SNP [dm3] 2L_7159879_SNP [dm6]	A	C	4.178e^-4	0.939	INTERGENIC
X	4290922	X_4290922_SNP [dm3] X_4396889_SNP [dm6]	T	C	4.181e^-4	0.939	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14897840	2R_14897840_SNP [dm3] 2R_19010335_SNP [dm6]	A	T	4.185e^-4	0.939	INTERGENIC
3L	10728652	3L_10728652_SNP [dm3] 3L_10735552_SNP [dm6]	G	T	4.193e^-4	0.939	INTERGENIC
3L	12454836	3L_12454836_SNP [dm3] 3L_12461736_SNP [dm6]	T	C	4.197e^-4	0.939	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
2L	6148107	2L_6148107_SNP [dm3] 2L_6148107_SNP [dm6]	A	G	4.203e^-4	0.939	INTERGENIC
3R	11839112	3R_11839112_SNP [dm3] 3R_16013390_SNP [dm6]	G	A	4.205e^-4	0.939	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26792533	3R_26792533_SNP [dm3] 3R_30966811_SNP [dm6]	A	G	4.218e^-4	0.939	INTERGENIC
X	21084385	X_21084385_SNP [dm3] X_21213358_SNP [dm6]	T	G	4.219e^-4	0.939	INTRON CG32521
2L	4224646	2L_4224646_SNP [dm3] 2L_4224646_SNP [dm6]	G	A	4.227e^-4	0.939	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9651013	2L_9651013_SNP [dm3] 2L_9651013_SNP [dm6]	C	G	4.246e^-4	0.939	SYNONYMOUS_CODING Apoltp
2R	10610161	2R_10610161_SNP [dm3] 2R_14722656_SNP [dm6]	G	A	4.250e^-4	0.939	INTERGENIC
2L	6535263	2L_6535263_SNP [dm3] 2L_6535263_SNP [dm6]	G	T	4.257e^-4	0.939	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	26780582	3R_26780582_SNP [dm3] 3R_30954860_SNP [dm6]	G	A	4.259e^-4	0.939	INTERGENIC
2L	1320902	2L_1320902_SNP [dm3] 2L_1320902_SNP [dm6]	T	A	4.264e^-4	0.939	INTERGENIC
2R	4119893	2R_4119893_SNP [dm3] 2R_8232388_SNP [dm6]	A	G	4.272e^-4	0.939	UPSTREAM dpn INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	20228295	2L_20228295_SNP [dm3] 2L_20228295_SNP [dm6]	T	C	4.273e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5862481	2L_5862481_SNP [dm3] 2L_5862481_SNP [dm6]	C	T	4.274e^-4	0.939	INTRON rau
X	7105522	X_7105522_SNP [dm3] X_7211489_SNP [dm6]	A	G	4.278e^-4	0.939	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8265515	2R_8265515_SNP [dm3] 2R_12378010_SNP [dm6]	C	G	4.282e^-4	0.939	UPSTREAM Cpr49Ab DOWNSTREAM Cpr49Aa INTERGENIC	TF binding site mE1_TFBS_cad
2R	17255597	2R_17255597_SNP [dm3] 2R_21368092_SNP [dm6]	C	T	4.285e^-4	0.939	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5016155	X_5016155_SNP [dm3] X_5122122_SNP [dm6]	C	T	4.285e^-4	0.939	INTRON rg & 1 other
3R	23331962	3R_23331962_SNP [dm3] 3R_27506240_SNP [dm6]	T	C	4.288e^-4	0.939	INTERGENIC
2L	11693413	2L_11693413_DEL [dm3] 2L_11693413_DEL [dm6]	AACGTGGGCGCATATGA...	A	4.300e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11000427	3L_11000427_SNP [dm3] 3L_11007327_SNP [dm6]	A	G	4.320e^-4	0.939	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6447015	X_6447015_SNP [dm3] X_6552982_SNP [dm6]	C	T	4.325e^-4	0.939	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5349640	3L_5349640_SNP [dm3] 3L_5356540_SNP [dm6]	T	A	4.333e^-4	0.939	UPSTREAM lama DOWNSTREAM tRNA:CR32421 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4618244	2L_4618244_SNP [dm3] 2L_4618244_SNP [dm6]	A	C	4.339e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15277865	3R_15277865_DEL [dm3] 3R_19452143_DEL [dm6]	TT	T	4.352e^-4	0.939	INTRON CG31221
2R	5062637	2R_5062637_SNP [dm3] 2R_9175132_SNP [dm6]	G	A	4.353e^-4	0.939	INTRON Rme-8
X	4290954	X_4290954_SNP [dm3] X_4396921_SNP [dm6]	T	C	4.353e^-4	0.939	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21997048	3R_21997048_SNP [dm3] 3R_26171326_SNP [dm6]	C	G	4.354e^-4	0.939	UPSTREAM CG31323 INTRON CG31323
X	13217321	X_13217321_SNP [dm3] X_13323288_SNP [dm6]	T	C	4.354e^-4	0.939	INTRON IP3K2
2L	14581715	2L_14581715_SNP [dm3] 2L_14581715_SNP [dm6]	A	C	4.371e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12672075	2L_12672075_SNP [dm3] 2L_12672075_SNP [dm6]	T	G	4.375e^-4	0.939	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	4899948	3L_4899948_SNP [dm3] 3L_4899948_SNP [dm6]	T	G	4.377e^-4	0.939	INTRON CG13704
X	14808111	X_14808111_SNP [dm3] X_14914078_SNP [dm6]	T	C	4.378e^-4	0.939	UPSTREAM CG12398 INTRON Flo2
X	1677081	X_1677081_SNP [dm3] X_1783048_SNP [dm6]	G	A	4.380e^-4	0.939	INTRON CG42666 & 1 other	TF binding site mE1_TFBS_cad
3L	15351590	3L_15351590_SNP [dm3] 3L_15358490_SNP [dm6]	G	A	4.381e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17542987	2R_17542987_SNP [dm3] 2R_21655482_SNP [dm6]	G	T	4.396e^-4	0.939	SYNONYMOUS_CODING CG10082 DOWNSTREAM CR43786	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1484407	2L_1484407_SNP [dm3] 2L_1484407_SNP [dm6]	C	G	4.414e^-4	0.939	INTERGENIC
X	906824	X_906824_SNP [dm3] X_1012791_SNP [dm6]	C	A	4.420e^-4	0.939	UTR_5_PRIME su_w[a]_ DOWNSTREAM CG14631
X	21929617	X_21929617_SNP [dm3] X_22527781_SNP [dm6]	T	C	4.423e^-4	0.939	INTRON CG17600
2R	3003748	2R_3003748_SNP [dm3] 2R_7116243_SNP [dm6]	C	A	4.439e^-4	0.939	INTRON esn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1400129	3L_1400129_SNP [dm3] 3L_1400129_SNP [dm6]	C	T	4.439e^-4	0.939	SYNONYMOUS_CODING CG32320 INTRON Ptp61F
2L	14605019	2L_14605019_SNP [dm3] 2L_14605019_SNP [dm6]	C	T	4.449e^-4	0.939	NON_SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo
2R	8534526	2R_8534526_SNP [dm3] 2R_12647021_SNP [dm6]	G	T	4.450e^-4	0.939	INTRON CG8785
2L	7289006	2L_7289006_SNP [dm3] 2L_7289006_SNP [dm6]	C	G	4.451e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7366201	2L_7366201_SNP [dm3] 2L_7366201_SNP [dm6]	G	A	4.453e^-4	0.939	INTRON Wnt10
X	21088394	X_21088394_SNP [dm3] X_21217367_SNP [dm6]	A	G	4.459e^-4	0.939	UPSTREAM CG32523 INTRON CG32521
2L	9169324	2L_9169324_SNP [dm3] 2L_9169324_SNP [dm6]	C	G	4.489e^-4	0.939	INTRON tai
2R	11398697	2R_11398697_SNP [dm3] 2R_15511192_SNP [dm6]	T	C	4.495e^-4	0.939	UPSTREAM GalNAc-T1 INTERGENIC
3L	13734357	3L_13734357_SNP [dm3] 3L_13741257_SNP [dm6]	G	A	4.497e^-4	0.939	INTRON bru-3
3R	24637233	3R_24637233_SNP [dm3] 3R_28811511_SNP [dm6]	T	C	4.505e^-4	0.939	UPSTREAM CG1646 & 1 other INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	3385318	X_3385318_SNP [dm3] X_3491285_SNP [dm6]	G	A	4.508e^-4	0.939	UTR_3_PRIME Gas8 DOWNSTREAM Gas8 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3268015	2L_3268015_SNP [dm3] 2L_3268015_SNP [dm6]	A	C	4.510e^-4	0.939	UPSTREAM CR44484 INTERGENIC
2R	4118932	2R_4118932_SNP [dm3] 2R_8231427_SNP [dm6]	T	G	4.519e^-4	0.939	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
X	20954718	X_20954718_SNP [dm3] X_21083691_SNP [dm6]	G	A	4.523e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15703669	2R_15703669_SNP [dm3] 2R_19816164_SNP [dm6]	T	C	4.527e^-4	0.939	UTR_3_PRIME Obp56h DOWNSTREAM Obp56h
2L	5612207	2L_5612207_SNP [dm3] 2L_5612207_SNP [dm6]	T	C	4.546e^-4	0.939	INTRON CG14010
2R	6354521	2R_6354521_SNP [dm3] 2R_10467016_SNP [dm6]	C	G	4.552e^-4	0.939	NON_SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8265517	2R_8265517_SNP [dm3] 2R_12378012_SNP [dm6]	G	C	4.552e^-4	0.939	UPSTREAM Cpr49Ab DOWNSTREAM Cpr49Aa INTERGENIC	TF binding site mE1_TFBS_cad
X	20796739	X_20796739_SNP [dm3] X_20925712_SNP [dm6]	G	A	4.557e^-4	0.939	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14725000	X_14725000_SNP [dm3] X_14830967_SNP [dm6]	A	T	4.562e^-4	0.939	INTRON CG14408	TF binding site mE1_TFBS_cad
2R	20326199	2R_20326199_SNP [dm3] 2R_24438676_SNP [dm6]	C	T	4.562e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17037760	2R_17037760_DEL [dm3] 2R_21150255_DEL [dm6]	AA	C	4.568e^-4	0.939	INTRON CG30389
X	4350743	X_4350743_SNP [dm3] X_4456710_SNP [dm6]	C	T	4.569e^-4	0.939	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11549448	2L_11549448_SNP [dm3] 2L_11549448_SNP [dm6]	G	A	4.570e^-4	0.939	INTRON CR44494
3L	15351518	3L_15351518_SNP [dm3] 3L_15358418_SNP [dm6]	T	C	4.573e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12671973	2L_12671973_SNP [dm3] 2L_12671973_SNP [dm6]	G	A	4.576e^-4	0.939	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	5897457	2L_5897457_SNP [dm3] 2L_5897457_SNP [dm6]	G	A	4.584e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17415441	2L_17415441_SNP [dm3] 2L_17415441_SNP [dm6]	G	A	4.584e^-4	0.939	UTR_3_PRIME Dif INTRON Dif	TF binding site mE1_TFBS_inv
2L	22054590	2L_22054590_SNP [dm3] 2L_22054590_SNP [dm6]	C	A	4.585e^-4	0.939	UPSTREAM CG34173 INTERGENIC
2R	17181037	2R_17181037_DEL [dm3] 2R_21293532_DEL [dm6]	ACAGAGTAAA	A	4.594e^-4	0.939	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17447676	2R_17447676_SNP [dm3] 2R_21560171_SNP [dm6]	G	T	4.599e^-4	0.939	DOWNSTREAM CG10440 & 1 other INTERGENIC
X	3707804	X_3707804_SNP [dm3] X_3813771_SNP [dm6]	A	G	4.609e^-4	0.939	INTRON ec
2R	16732574	2R_16732574_SNP [dm3] 2R_20845069_SNP [dm6]	T	A	4.610e^-4	0.939	INTERGENIC
X	4065573	X_4065573_SNP [dm3] X_4171540_SNP [dm6]	C	G	4.619e^-4	0.939	INTRON Fas2	TF binding site mE1_TFBS_inv
2R	10796716	2R_10796716_SNP [dm3] 2R_14909211_SNP [dm6]	T	C	4.620e^-4	0.939	INTRON CG10249
X	4532314	X_4532314_SNP [dm3] X_4638281_SNP [dm6]	T	C	4.624e^-4	0.939	SYNONYMOUS_CODING pon DOWNSTREAM CG3081	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15277903	3R_15277903_SNP [dm3] 3R_19452181_SNP [dm6]	G	T	4.630e^-4	0.939	INTRON CG31221
X	14348870	X_14348870_SNP [dm3] X_14454837_SNP [dm6]	A	G	4.646e^-4	0.939	INTRON dpr8
2L	16289499	2L_16289499_SNP [dm3] 2L_16289499_SNP [dm6]	A	T	4.648e^-4	0.939	NON_SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
2L	9926009	2L_9926009_SNP [dm3] 2L_9926009_SNP [dm6]	A	T	4.648e^-4	0.939	INTRON CG42366
X	20855373	X_20855373_SNP [dm3] X_20984346_SNP [dm6]	T	C	4.663e^-4	0.939	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3862021	X_3862021_SNP [dm3] X_3967988_SNP [dm6]	T	A	4.663e^-4	0.939	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
X	13034561	X_13034561_SNP [dm3] X_13140528_SNP [dm6]	A	G	4.670e^-4	0.939	INTRON CG32645	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9633362	3R_9633362_SNP [dm3] 3R_13807640_SNP [dm6]	A	T	4.677e^-4	0.939	INTERGENIC
3R	13007920	3R_13007920_SNP [dm3] 3R_17182198_SNP [dm6]	A	T	4.681e^-4	0.939	INTRON Mur89F
2L	905450	2L_905450_SNP [dm3] 2L_905450_SNP [dm6]	C	T	4.687e^-4	0.939	INTERGENIC
3R	5090904	3R_5090904_SNP [dm3] 3R_9265182_SNP [dm6]	A	G	4.688e^-4	0.939	UTR_3_PRIME Aats-trp	TF binding site mE1_TFBS_cad
2R	20260408	2R_20260408_SNP [dm3] 2R_24372885_SNP [dm6]	A	T	4.691e^-4	0.939	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20287159	2R_20287159_SNP [dm3] 2R_24399636_SNP [dm6]	G	C	4.691e^-4	0.939	UPSTREAM Rpn8 INTRON slik
X	15432870	X_15432870_SNP [dm3] X_15538837_SNP [dm6]	T	A	4.692e^-4	0.939	INTRON Ac13E
X	10789339	X_10789339_SNP [dm3] X_10895306_SNP [dm6]	G	A	4.697e^-4	0.939	SYNONYMOUS_CODING CG1582	TF binding site mE1_TFBS_cad
X	12317193	X_12317193_SNP [dm3] X_12423160_SNP [dm6]	A	G	4.700e^-4	0.939	INTERGENIC
X	18386831	X_18386831_SNP [dm3] X_18492798_SNP [dm6]	C	T	4.700e^-4	0.939	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
2R	6354560	2R_6354560_SNP [dm3] 2R_10467055_SNP [dm6]	C	T	4.706e^-4	0.939	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1965691	3L_1965691_SNP [dm3] 3L_1965691_SNP [dm6]	G	A	4.711e^-4	0.939	SYNONYMOUS_CODING SCOT	TF binding site mE1_TFBS_chinmo
2R	13131604	2R_13131604_SNP [dm3] 2R_17244099_SNP [dm6]	C	T	4.714e^-4	0.939	INTRON mbl	TF binding site mE1_TFBS_inv
X	5728625	X_5728625_SNP [dm3] X_5834592_SNP [dm6]	G	A	4.721e^-4	0.939	INTRON CG15765
3L	478000	3L_478000_SNP [dm3] 3L_478000_SNP [dm6]	T	G	4.728e^-4	0.939	INTRON klar
3R	25316734	3R_25316734_SNP [dm3] 3R_29491012_SNP [dm6]	T	C	4.732e^-4	0.939	UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other INTRON Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16928217	X_16928217_SNP [dm3] X_17034184_SNP [dm6]	G	C	4.734e^-4	0.939	INTRON CG45002
2R	11399069	2R_11399069_SNP [dm3] 2R_15511564_SNP [dm6]	A	C	4.741e^-4	0.939	UPSTREAM GalNAc-T1 INTERGENIC
X	10009261	X_10009261_SNP [dm3] X_10115228_SNP [dm6]	T	A	4.741e^-4	0.939	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	11895945	2L_11895945_SNP [dm3] 2L_11895945_SNP [dm6]	G	A	4.741e^-4	0.939	INTRON Pde1c
2R	12440238	2R_12440238_SNP [dm3] 2R_16552733_SNP [dm6]	A	G	4.748e^-4	0.939	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	7015653	3R_7015653_SNP [dm3] 3R_11189931_SNP [dm6]	A	T	4.755e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19374708	2L_19374708_SNP [dm3] 2L_19374708_SNP [dm6]	G	A	4.765e^-4	0.939	INTERGENIC
3R	21030376	3R_21030376_SNP [dm3] 3R_25204654_SNP [dm6]	G	A	4.766e^-4	0.939	NON_SYNONYMOUS_CODING Cad96Ca INTRON CG13654
3R	10589325	3R_10589325_SNP [dm3] 3R_14763603_SNP [dm6]	T	C	4.780e^-4	0.939	INTRON jvl
X	4065625	X_4065625_SNP [dm3] X_4171592_SNP [dm6]	T	C	4.784e^-4	0.939	INTRON Fas2	TF binding site mE1_TFBS_inv
2L	16447009	2L_16447009_SNP [dm3] 2L_16447009_SNP [dm6]	G	T	4.794e^-4	0.939	UPSTREAM Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
X	13860783	X_13860783_SNP [dm3] X_13966750_SNP [dm6]	C	A	4.799e^-4	0.939	INTRON mamo
X	2837435	X_2837435_SNP [dm3] X_2943402_SNP [dm6]	C	T	4.804e^-4	0.939	UTR_5_PRIME CG14422 INTRON kirre
2R	20308551	2R_20308551_SNP [dm3] 2R_24421028_SNP [dm6]	C	G	4.819e^-4	0.939	INTRON prom
3R	26346377	3R_26346377_SNP [dm3] 3R_30520655_SNP [dm6]	C	A	4.826e^-4	0.939	INTRON jdp
2R	18006165	2R_18006165_SNP [dm3] 2R_22118660_SNP [dm6]	A	G	4.829e^-4	0.939	INTRON Vrp1	TF binding site mE1_TFBS_HSA
2L	11671799	2L_11671799_SNP [dm3] 2L_11671799_SNP [dm6]	C	T	4.830e^-4	0.939	INTERGENIC
2L	19378082	2L_19378082_INS [dm3] 2L_19378082_INS [dm6]	C	CC	4.839e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17043089	2R_17043089_SNP [dm3] 2R_21155584_SNP [dm6]	C	T	4.844e^-4	0.939	INTRON CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20907006	2L_20907006_SNP [dm3] 2L_20907006_SNP [dm6]	T	G	4.845e^-4	0.939	INTRON sky & 1 other
2L	1259352	2L_1259352_SNP [dm3] 2L_1259352_SNP [dm6]	C	G	4.851e^-4	0.939	INTRON robo3	TF binding site mE1_TFBS_Kr
X	9006430	X_9006430_SNP [dm3] X_9112397_SNP [dm6]	G	A	4.857e^-4	0.939	INTRON AP-1gamma
2L	506810	2L_506810_SNP [dm3] 2L_506810_SNP [dm6]	C	T	4.871e^-4	0.939	INTRON ush
X	9672519	X_9672519_SNP [dm3] X_9778486_SNP [dm6]	C	T	4.874e^-4	0.939	UPSTREAM CG1354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10096702	2L_10096702_SNP [dm3] 2L_10096702_SNP [dm6]	C	G	4.895e^-4	0.939	INTRON CG44153 & 1 other
2L	10096703	2L_10096703_SNP [dm3] 2L_10096703_SNP [dm6]	C	A	4.895e^-4	0.939	INTRON CG44153 & 1 other
2R	16678955	2R_16678955_DEL [dm3] 2R_20791450_DEL [dm6]	AA	A	4.902e^-4	0.939	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
2R	16678958	2R_16678958_SNP [dm3] 2R_20791453_SNP [dm6]	G	C	4.902e^-4	0.939	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
2L	19111608	2L_19111608_SNP [dm3] 2L_19111608_SNP [dm6]	A	T	4.908e^-4	0.939	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18209716	3L_18209716_SNP [dm3] 3L_18216616_SNP [dm6]	G	T	4.911e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8421385	3L_8421385_SNP [dm3] 3L_8428285_SNP [dm6]	A	G	4.929e^-4	0.939	UTR_3_PRIME Cbl INTRON Cbl
3L	6279969	3L_6279969_SNP [dm3] 3L_6286869_SNP [dm6]	G	T	4.936e^-4	0.939	INTERGENIC
2L	7073449	2L_7073449_SNP [dm3] 2L_7073449_SNP [dm6]	T	G	4.937e^-4	0.939	INTRON Pvf2
2L	5334568	2L_5334568_SNP [dm3] 2L_5334568_SNP [dm6]	A	G	4.937e^-4	0.939	INTRON fusl
2L	5441941	2L_5441941_SNP [dm3] 2L_5441941_SNP [dm6]	G	A	4.945e^-4	0.939	INTERGENIC
3R	21861576	3R_21861576_SNP [dm3] 3R_26035854_SNP [dm6]	A	G	4.949e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5949955	3R_5949955_SNP [dm3] 3R_10124233_SNP [dm6]	G	A	4.956e^-4	0.939	SYNONYMOUS_CODING knk	TF binding site mE1_TFBS_HSA
2R	19338028	2R_19338028_SNP [dm3] 2R_23450505_SNP [dm6]	T	G	4.960e^-4	0.939	INTRON CG43795
2L	9647714	2L_9647714_SNP [dm3] 2L_9647714_SNP [dm6]	G	A	4.969e^-4	0.939	SYNONYMOUS_CODING Apoltp
2R	14349723	2R_14349723_SNP [dm3] 2R_18462218_SNP [dm6]	C	A	4.979e^-4	0.939	NON_SYNONYMOUS_CODING CG30116
3R	12947482	3R_12947482_SNP [dm3] 3R_17121760_SNP [dm6]	A	G	4.990e^-4	0.939	SYNONYMOUS_CODING CG42779 DOWNSTREAM CG34278 INTRON cher	TF binding site mE1_TFBS_inv
3L	9999154	3L_9999154_SNP [dm3] 3L_10006054_SNP [dm6]	A	T	5.018e^-4	0.939	INTRON dpr6
2L	7253713	2L_7253713_SNP [dm3] 2L_7253713_SNP [dm6]	G	A	5.023e^-4	0.939	UPSTREAM CG13786 INTERGENIC
3L	7998894	3L_7998894_SNP [dm3] 3L_8005794_SNP [dm6]	A	T	5.026e^-4	0.939	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16652344	3R_16652344_SNP [dm3] 3R_20826622_SNP [dm6]	A	G	5.027e^-4	0.939	UPSTREAM CR44047 INTRON AdSS
X	1665093	X_1665093_SNP [dm3] X_1771060_SNP [dm6]	A	G	5.030e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15277948	3R_15277948_SNP [dm3] 3R_19452226_SNP [dm6]	C	A	5.031e^-4	0.939	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	26792532	3R_26792532_SNP [dm3] 3R_30966810_SNP [dm6]	G	A	5.046e^-4	0.939	INTERGENIC
3L	12454949	3L_12454949_SNP [dm3] 3L_12461849_SNP [dm6]	A	T	5.049e^-4	0.939	DOWNSTREAM eyg INTERGENIC	TF binding site mE1_TFBS_inv
3L	12145451	3L_12145451_INS [dm3] 3L_12152351_INS [dm6]	T	TAT	5.054e^-4	0.939	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	4292845	X_4292845_SNP [dm3] X_4398812_SNP [dm6]	C	T	5.062e^-4	0.939	INTRON CR32773
3L	12048942	3L_12048942_SNP [dm3] 3L_12055842_SNP [dm6]	C	T	5.062e^-4	0.939	UTR_5_PRIME rols INTRON rols	TF binding site mE1_TFBS_Trl
2R	8130722	2R_8130722_SNP [dm3] 2R_12243217_SNP [dm6]	C	T	5.069e^-4	0.939	SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
3R	13930563	3R_13930563_DEL [dm3] 3R_18104841_DEL [dm6]	GG	G	5.089e^-4	0.939	INTRON sr
X	20797266	X_20797266_SNP [dm3] X_20926239_SNP [dm6]	G	T	5.089e^-4	0.939	INTRON shakB	TF binding site BDTNP1_TFBS_dl
X	5701543	X_5701543_SNP [dm3] X_5807510_SNP [dm6]	A	G	5.093e^-4	0.939	INTERGENIC
3R	6851765	3R_6851765_SNP [dm3] 3R_11026043_SNP [dm6]	A	G	5.103e^-4	0.939	INTRON CG34114
2L	5868800	2L_5868800_SNP [dm3] 2L_5868800_SNP [dm6]	T	C	5.106e^-4	0.939	INTRON rau
2L	2653921	2L_2653921_SNP [dm3] 2L_2653921_SNP [dm6]	C	T	5.130e^-4	0.939	UTR_3_PRIME Prosbeta4R1 UPSTREAM Or23a
2R	17419802	2R_17419802_SNP [dm3] 2R_21532297_SNP [dm6]	G	A	5.136e^-4	0.939	UPSTREAM CR44725 INTRON Egfr
3L	18398476	3L_18398476_SNP [dm3] 3L_18405376_SNP [dm6]	C	G	5.139e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2R	14722541	2R_14722541_SNP [dm3] 2R_18835036_SNP [dm6]	T	C	5.142e^-4	0.939	UPSTREAM CG15083 & 1 other INTERGENIC
X	3937443	X_3937443_SNP [dm3] X_4043410_SNP [dm6]	T	G	5.148e^-4	0.939	INTERGENIC
X	3707548	X_3707548_SNP [dm3] X_3813515_SNP [dm6]	G	A	5.151e^-4	0.939	INTRON ec
3R	17661075	3R_17661075_SNP [dm3] 3R_21835353_SNP [dm6]	A	G	5.154e^-4	0.939	INTERGENIC
3R	6984068	3R_6984068_SNP [dm3] 3R_11158346_SNP [dm6]	T	C	5.158e^-4	0.939	INTRON Ugt86Da
3L	16027741	3L_16027741_SNP [dm3] 3L_16034641_SNP [dm6]	C	G	5.159e^-4	0.939	UPSTREAM CG5895 DOWNSTREAM CG42716 INTRON CG42538	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15839214	3R_15839214_SNP [dm3] 3R_20013492_SNP [dm6]	A	T	5.169e^-4	0.939	UTR_5_PRIME CG17190 UPSTREAM CG4836
2L	9487363	2L_9487363_SNP [dm3] 2L_9487363_SNP [dm6]	T	A	5.178e^-4	0.939	INTERGENIC
3L	13836564	3L_13836564_SNP [dm3] 3L_13843464_SNP [dm6]	G	C	5.187e^-4	0.939	UPSTREAM Tsp68C & 1 other INTERGENIC
2L	16431169	2L_16431169_SNP [dm3] 2L_16431169_SNP [dm6]	C	T	5.187e^-4	0.939	INTRON CG5888
X	19299394	X_19299394_SNP [dm3] X_19405361_SNP [dm6]	T	A	5.193e^-4	0.939	INTRON kek5
3L	11613310	3L_11613310_SNP [dm3] 3L_11620210_SNP [dm6]	T	G	5.196e^-4	0.939	UPSTREAM Muc68Ca DOWNSTREAM CG6084 INTERGENIC
3R	16483011	3R_16483011_SNP [dm3] 3R_20657289_SNP [dm6]	T	C	5.202e^-4	0.939	UPSTREAM Nep4 INTRON Nep4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17252440	2R_17252440_SNP [dm3] 2R_21364935_SNP [dm6]	G	A	5.206e^-4	0.939	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9768202	X_9768202_SNP [dm3] X_9874169_SNP [dm6]	C	T	5.208e^-4	0.939	UPSTREAM CG32695 DOWNSTREAM CG15247 INTERGENIC
3L	16217143	3L_16217143_SNP [dm3] 3L_16224043_SNP [dm6]	C	A	5.212e^-4	0.939	INTERGENIC
2L	2653976	2L_2653976_SNP [dm3] 2L_2653976_SNP [dm6]	G	A	5.213e^-4	0.939	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2R	17054875	2R_17054875_SNP [dm3] 2R_21167370_SNP [dm6]	T	G	5.218e^-4	0.939	SYNONYMOUS_CODING CG4266 INTRON CG4266	TF binding site mE1_TFBS_sens
X	20957139	X_20957139_SNP [dm3] X_21086112_SNP [dm6]	T	C	5.222e^-4	0.939	INTERGENIC
2R	15994173	2R_15994173_SNP [dm3] 2R_20106668_SNP [dm6]	G	T	5.227e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3430905	2L_3430905_DEL [dm3] 2L_3430905_DEL [dm6]	TTC	T	5.230e^-4	0.939	INTERGENIC
3L	7278485	3L_7278485_SNP [dm3] 3L_7285385_SNP [dm6]	C	T	5.243e^-4	0.939	INTRON unc-13-4A
2R	14445740	2R_14445740_SNP [dm3] 2R_18558235_SNP [dm6]	G	A	5.249e^-4	0.939	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1262688	X_1262688_SNP [dm3] X_1368655_SNP [dm6]	T	A	5.250e^-4	0.939	UPSTREAM CG14770 INTERGENIC	TF binding site mE1_TFBS_sens
2L	6618258	2L_6618258_SNP [dm3] 2L_6618258_SNP [dm6]	C	T	5.251e^-4	0.939	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
3L	9595256	3L_9595256_SNP [dm3] 3L_9602156_SNP [dm6]	A	G	5.254e^-4	0.939	SYNONYMOUS_CODING CG3306 UPSTREAM CG3088
2L	7972187	2L_7972187_SNP [dm3] 2L_7972187_SNP [dm6]	T	G	5.262e^-4	0.939	INTRON Snoo
X	15432869	X_15432869_SNP [dm3] X_15538836_SNP [dm6]	T	A	5.273e^-4	0.939	INTRON Ac13E
3L	18393899	3L_18393899_SNP [dm3] 3L_18400799_SNP [dm6]	T	C	5.275e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1680796	2R_1680796_SNP [dm3] 2R_5793291_SNP [dm6]	C	T	5.277e^-4	0.939	UPSTREAM Or42a INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15332756	2L_15332756_SNP [dm3] 2L_15332756_SNP [dm6]	T	A	5.280e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	20219717	2R_20219717_INS [dm3] 2R_24332194_INS [dm6]	G	GG	5.289e^-4	0.939	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1159203	2L_1159203_SNP [dm3] 2L_1159203_SNP [dm6]	A	G	5.289e^-4	0.939	SYNONYMOUS_CODING Tango14 UPSTREAM capt EXON CR43767	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6546420	2L_6546420_SNP [dm3] 2L_6546420_SNP [dm6]	G	A	5.298e^-4	0.939	INTRON eya	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	17424812	2R_17424812_SNP [dm3] 2R_21537307_SNP [dm6]	A	G	5.299e^-4	0.939	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 DOWNSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_sens
2R	14979845	2R_14979845_SNP [dm3] 2R_19092340_SNP [dm6]	T	A	5.303e^-4	0.939	INTRON 5-HT1A
2R	12854431	2R_12854431_SNP [dm3] 2R_16966926_SNP [dm6]	C	A	5.310e^-4	0.939	INTERGENIC
2R	12126942	2R_12126942_SNP [dm3] 2R_16239437_SNP [dm6]	A	G	5.320e^-4	0.939	SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15158891	3L_15158891_SNP [dm3] 3L_15165791_SNP [dm6]	G	A	5.322e^-4	0.939	INTERGENIC
2R	11287299	2R_11287299_SNP [dm3] 2R_15399794_SNP [dm6]	C	A	5.327e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6751343	3L_6751343_SNP [dm3] 3L_6758243_SNP [dm6]	A	G	5.335e^-4	0.939	INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4290921	X_4290921_SNP [dm3] X_4396888_SNP [dm6]	A	G	5.347e^-4	0.939	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19905814	2R_19905814_SNP [dm3] 2R_24018291_SNP [dm6]	G	A	5.351e^-4	0.939	SYNONYMOUS_CODING CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19905823	2R_19905823_SNP [dm3] 2R_24018300_SNP [dm6]	T	C	5.351e^-4	0.939	SYNONYMOUS_CODING CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6006534	3R_6006534_SNP [dm3] 3R_10180812_SNP [dm6]	G	C	5.352e^-4	0.939	INTRON CG12814
2R	16600445	2R_16600445_SNP [dm3] 2R_20712940_SNP [dm6]	C	T	5.353e^-4	0.939	INTRON dpr
2L	4620884	2L_4620884_SNP [dm3] 2L_4620884_SNP [dm6]	T	C	5.385e^-4	0.939	EXON CR44609
X	8234110	X_8234110_SNP [dm3] X_8340077_SNP [dm6]	G	T	5.389e^-4	0.939	INTRON nAChRalpha3
2L	8628193	2L_8628193_SNP [dm3] 2L_8628193_SNP [dm6]	A	C	5.393e^-4	0.939	INTRON Sema-1a
2R	11337077	2R_11337077_SNP [dm3] 2R_15449572_SNP [dm6]	T	A	5.398e^-4	0.939	INTRON CG43729
2R	14638492	2R_14638492_SNP [dm3] 2R_18750987_SNP [dm6]	G	C	5.398e^-4	0.939	NON_SYNONYMOUS_CODING Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	2543285	2L_2543285_SNP [dm3] 2L_2543285_SNP [dm6]	A	C	5.399e^-4	0.939	INTERGENIC
2R	7876753	2R_7876753_SNP [dm3] 2R_11989248_SNP [dm6]	A	T	5.403e^-4	0.939	START_GAINED CG8298 UTR_5_PRIME CG8298 UPSTREAM rho-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	16483014	3R_16483014_SNP [dm3] 3R_20657292_SNP [dm6]	A	C	5.415e^-4	0.939	UPSTREAM Nep4 INTRON Nep4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11430540	2R_11430540_SNP [dm3] 2R_15543035_SNP [dm6]	C	T	5.430e^-4	0.939	SYNONYMOUS_CODING eIF2B-gamma DOWNSTREAM Vha36-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11923732	3L_11923732_SNP [dm3] 3L_11930632_SNP [dm6]	A	T	5.433e^-4	0.939	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20555541	3L_20555541_SNP [dm3] 3L_20562441_SNP [dm6]	C	G	5.436e^-4	0.939	INTERGENIC
3R	2359060	3R_2359060_INS [dm3] 3R_6533338_INS [dm6]	T	TT	5.441e^-4	0.939	INTRON dpr11
2L	9923358	2L_9923358_SNP [dm3] 2L_9923358_SNP [dm6]	T	A	5.450e^-4	0.939	SPLICE_SITE_REGION TbCMF46 DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24216201	3R_24216201_SNP [dm3] 3R_28390479_SNP [dm6]	T	A	5.457e^-4	0.939	INTERGENIC
X	17333204	X_17333204_SNP [dm3] X_17439171_SNP [dm6]	T	C	5.465e^-4	0.939	INTRON CG12994
3R	21381975	3R_21381975_SNP [dm3] 3R_25556253_SNP [dm6]	C	A	5.468e^-4	0.939	INTRON msi
2R	15821314	2R_15821314_DEL [dm3] 2R_19933809_DEL [dm6]	GA	T	5.485e^-4	0.939	UPSTREAM CR44627 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	21102344	X_21102344_SNP [dm3] X_21231317_SNP [dm6]	C	T	5.493e^-4	0.939	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3L	2474485	3L_2474485_SNP [dm3] 3L_2474485_SNP [dm6]	T	C	5.501e^-4	0.939	DOWNSTREAM CG16762 INTRON CG45186
2L	12453394	2L_12453394_SNP [dm3] 2L_12453394_SNP [dm6]	C	T	5.514e^-4	0.939	UPSTREAM CR17024 & 1 other INTERGENIC
3L	22475813	3L_22475813_SNP [dm3] 3L_22482713_SNP [dm6]	A	G	5.526e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20470655	X_20470655_SNP [dm3] X_20599628_SNP [dm6]	A	G	5.532e^-4	0.939	INTRON RunxA
3R	24634506	3R_24634506_SNP [dm3] 3R_28808784_SNP [dm6]	A	G	5.538e^-4	0.939	INTRON wdn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8770819	3R_8770819_SNP [dm3] 3R_12945097_SNP [dm6]	A	G	5.542e^-4	0.939	INTERGENIC
3L	10944483	3L_10944483_SNP [dm3] 3L_10951383_SNP [dm6]	A	T	5.548e^-4	0.939	INTERGENIC
2R	11400441	2R_11400441_SNP [dm3] 2R_15512936_SNP [dm6]	A	T	5.553e^-4	0.939	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
3R	8437534	3R_8437534_SNP [dm3] 3R_12611812_SNP [dm6]	A	G	5.554e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	6644723	2R_6644723_SNP [dm3] 2R_10757218_SNP [dm6]	T	A	5.555e^-4	0.939	NON_SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5465144	2L_5465144_SNP [dm3] 2L_5465144_SNP [dm6]	C	A	5.557e^-4	0.939	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	12157413	2L_12157413_SNP [dm3] 2L_12157413_SNP [dm6]	T	C	5.559e^-4	0.939	INTRON CG31760
2R	5135534	2R_5135534_SNP [dm3] 2R_9248029_SNP [dm6]	A	T	5.562e^-4	0.939	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3735781	3L_3735781_SNP [dm3] 3L_3735781_SNP [dm6]	T	A	5.563e^-4	0.939	INTRON CG32264
X	20500108	X_20500108_SNP [dm3] X_20629081_SNP [dm6]	C	A	5.563e^-4	0.939	INTERGENIC
X	20836920	X_20836920_SNP [dm3] X_20965893_SNP [dm6]	A	G	5.566e^-4	0.939	UPSTREAM CG1304 INTERGENIC
2L	7356141	2L_7356141_SNP [dm3] 2L_7356141_SNP [dm6]	G	C	5.567e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17048934	2R_17048934_SNP [dm3] 2R_21161429_SNP [dm6]	A	G	5.570e^-4	0.939	UPSTREAM tRNA:CR30208 & 3 others DOWNSTREAM CG4266 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5476575	2L_5476575_SNP [dm3] 2L_5476575_SNP [dm6]	A	C	5.575e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
X	15751462	X_15751462_SNP [dm3] X_15857429_SNP [dm6]	C	G	5.579e^-4	0.939	UTR_5_PRIME Myb DOWNSTREAM AlkB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14319223	3L_14319223_SNP [dm3] 3L_14326123_SNP [dm6]	C	T	5.589e^-4	0.939	INTRON fz EXON CR45025
2R	6601994	2R_6601994_SNP [dm3] 2R_10714489_SNP [dm6]	C	T	5.600e^-4	0.939	SYNONYMOUS_CODING stan
3L	6702898	3L_6702898_SNP [dm3] 3L_6709798_SNP [dm6]	G	A	5.604e^-4	0.939	DOWNSTREAM CG8519 INTERGENIC
3R	5949485	3R_5949485_SNP [dm3] 3R_10123763_SNP [dm6]	C	G	5.604e^-4	0.939	NON_SYNONYMOUS_CODING knk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9006171	X_9006171_SNP [dm3] X_9112138_SNP [dm6]	T	A	5.607e^-4	0.939	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_twi
2R	12863922	2R_12863922_SNP [dm3] 2R_16976417_SNP [dm6]	C	A	5.609e^-4	0.939	INTRON Cbp53E
3R	25822411	3R_25822411_SNP [dm3] 3R_29996689_SNP [dm6]	G	A	5.610e^-4	0.939	SYNONYMOUS_CODING Sas-6 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2094909	3L_2094909_SNP [dm3] 3L_2094909_SNP [dm6]	T	C	5.616e^-4	0.939	INTRON sls
X	13881541	X_13881541_SNP [dm3] X_13987508_SNP [dm6]	A	T	5.617e^-4	0.939	INTRON mamo	TF binding site mE1_TFBS_HSA
2R	19346622	2R_19346622_SNP [dm3] 2R_23459099_SNP [dm6]	C	G	5.619e^-4	0.939	UPSTREAM skpF INTRON CG43795
2L	5791556	2L_5791556_SNP [dm3] 2L_5791556_SNP [dm6]	T	C	5.624e^-4	0.939	INTRON CG9171
2L	4087358	2L_4087358_SNP [dm3] 2L_4087358_SNP [dm6]	T	C	5.632e^-4	0.939	INTRON ed
X	6855851	X_6855851_SNP [dm3] X_6961818_SNP [dm6]	C	A	5.636e^-4	0.939	INTRON CG14431 & 1 other

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.468e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02453

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.022	0.0492

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1809 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7782912	2L_7782912_SNP [dm3] 2L_7782912_SNP [dm6]	C	T	3.879e^-7	0.727	UTR_5_PRIME CG7154 DOWNSTREAM CG7164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	8094778	X_8094778_SNP [dm3] X_8200745_SNP [dm6]	C	T	2.979e^-6	0.853	INTRON sdt
2L	4280195	2L_4280195_SNP [dm3] 2L_4280195_SNP [dm6]	C	T	3.078e^-6	0.853	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13171270	2R_13171270_SNP [dm3] 2R_17283765_SNP [dm6]	T	A	3.389e^-6	0.853	INTRON mbl
2L	4280197	2L_4280197_SNP [dm3] 2L_4280197_SNP [dm6]	A	T	3.546e^-6	0.853	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13734319	3L_13734319_SNP [dm3] 3L_13741219_SNP [dm6]	T	G	3.614e^-6	0.853	INTRON bru-3
2R	19687345	2R_19687345_SNP [dm3] 2R_23799822_SNP [dm6]	T	C	3.757e^-6	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19170314	3R_19170314_SNP [dm3] 3R_23344592_SNP [dm6]	G	C	3.999e^-6	0.853	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6544015	2R_6544015_SNP [dm3] 2R_10656510_SNP [dm6]	T	A	4.867e^-6	0.853	DOWNSTREAM CR44452 INTERGENIC
X	5016155	X_5016155_SNP [dm3] X_5122122_SNP [dm6]	C	T	5.832e^-6	0.853	INTRON rg & 1 other
2R	6544046	2R_6544046_SNP [dm3] 2R_10656541_SNP [dm6]	G	A	5.963e^-6	0.853	DOWNSTREAM CR44452 INTERGENIC
2L	3263247	2L_3263247_SNP [dm3] 2L_3263247_SNP [dm6]	A	G	6.647e^-6	0.853	DOWNSTREAM CR45706 INTERGENIC
3R	6852352	3R_6852352_SNP [dm3] 3R_11026630_SNP [dm6]	C	T	6.997e^-6	0.853	INTRON CG34114
2R	9217213	2R_9217213_SNP [dm3] 2R_13329708_SNP [dm6]	G	A	7.038e^-6	0.853	UPSTREAM mir-184 EXON CR44206
3R	8773670	3R_8773670_SNP [dm3] 3R_12947948_SNP [dm6]	T	C	7.214e^-6	0.853	INTERGENIC
2R	17574118	2R_17574118_SNP [dm3] 2R_21686613_SNP [dm6]	A	G	7.532e^-6	0.853	DOWNSTREAM CG10306 INTRON Tbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13112725	2R_13112725_SNP [dm3] 2R_17225220_SNP [dm6]	A	C	8.306e^-6	0.853	INTRON mbl
3R	15280011	3R_15280011_SNP [dm3] 3R_19454289_SNP [dm6]	C	T	8.714e^-6	0.853	INTRON CG31221
3R	14996866	3R_14996866_INS [dm3] 3R_19171144_INS [dm6]	C	CAACAATTCTC...	8.970e^-6	0.853	DOWNSTREAM sqz INTERGENIC
2R	14184523	2R_14184523_SNP [dm3] 2R_18297018_SNP [dm6]	G	A	9.876e^-6	0.853	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
X	8716744	X_8716744_SNP [dm3] X_8822711_SNP [dm6]	A	T	1.078e^-5	0.853	INTERGENIC
X	5016192	X_5016192_SNP [dm3] X_5122159_SNP [dm6]	A	G	1.150e^-5	0.853	INTRON rg & 1 other
3R	19170316	3R_19170316_SNP [dm3] 3R_23344594_SNP [dm6]	A	T	1.306e^-5	0.853	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6983506	2L_6983506_SNP [dm3] 2L_6983506_SNP [dm6]	T	G	1.309e^-5	0.853	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17574115	2R_17574115_SNP [dm3] 2R_21686610_SNP [dm6]	G	A	1.344e^-5	0.853	DOWNSTREAM CG10306 INTRON Tbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8342634	2R_8342634_SNP [dm3] 2R_12455129_SNP [dm6]	A	G	1.376e^-5	0.853	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	9145253	2R_9145253_SNP [dm3] 2R_13257748_SNP [dm6]	A	G	1.442e^-5	0.853	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
3R	8735856	3R_8735856_SNP [dm3] 3R_12910134_SNP [dm6]	T	G	1.542e^-5	0.853	UTR_3_PRIME CG10909
3L	11593876	3L_11593876_SNP [dm3] 3L_11600776_SNP [dm6]	G	A	1.556e^-5	0.853	UPSTREAM CG14137 & 1 other INTRON CG7368
2L	10113909	2L_10113909_SNP [dm3] 2L_10113909_SNP [dm6]	G	T	1.663e^-5	0.853	INTRON CG44153 & 1 other
2L	19166449	2L_19166449_SNP [dm3] 2L_19166449_SNP [dm6]	A	G	1.830e^-5	0.853	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	16476708	2R_16476708_SNP [dm3] 2R_20589203_SNP [dm6]	A	C	1.844e^-5	0.853	INTRON bl	TF binding site BDTNP1_TFBS_dl
3L	10999091	3L_10999091_SNP [dm3] 3L_11005991_SNP [dm6]	T	A	1.851e^-5	0.853	INTRON klu
2L	12588572	2L_12588572_SNP [dm3] 2L_12588572_SNP [dm6]	A	G	1.912e^-5	0.853	INTRON nub
3L	9761501	3L_9761501_SNP [dm3] 3L_9768401_SNP [dm6]	A	T	1.968e^-5	0.853	INTRON CG8177
3R	8773581	3R_8773581_SNP [dm3] 3R_12947859_SNP [dm6]	T	G	2.091e^-5	0.853	INTERGENIC
3R	25978191	3R_25978191_SNP [dm3] 3R_30152469_SNP [dm6]	A	G	2.108e^-5	0.853	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19170310	3R_19170310_SNP [dm3] 3R_23344588_SNP [dm6]	T	C	2.137e^-5	0.853	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	8828556	X_8828556_SNP [dm3] X_8934523_SNP [dm6]	C	T	2.154e^-5	0.853	INTRON rdgA
2R	17314474	2R_17314474_SNP [dm3] 2R_21426969_SNP [dm6]	C	A	2.198e^-5	0.853	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3263665	2L_3263665_SNP [dm3] 2L_3263665_SNP [dm6]	A	G	2.202e^-5	0.853	DOWNSTREAM CR45706 INTERGENIC
2L	9926009	2L_9926009_SNP [dm3] 2L_9926009_SNP [dm6]	A	T	2.230e^-5	0.853	INTRON CG42366
2R	17574150	2R_17574150_SNP [dm3] 2R_21686645_SNP [dm6]	A	T	2.284e^-5	0.853	DOWNSTREAM CG10306 INTRON Tbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10157944	3R_10157944_SNP [dm3] 3R_14332222_SNP [dm6]	C	T	2.313e^-5	0.853	INTRON NK7.1
X	20827443	X_20827443_SNP [dm3] X_20956416_SNP [dm6]	T	C	2.316e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3770808	3L_3770808_SNP [dm3] 3L_3770808_SNP [dm6]	A	G	2.415e^-5	0.853	INTRON CG32264
3R	10153576	3R_10153576_SNP [dm3] 3R_14327854_SNP [dm6]	G	A	2.415e^-5	0.853	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	10740572	3L_10740572_SNP [dm3] 3L_10747472_SNP [dm6]	A	G	2.438e^-5	0.853	INTERGENIC
2R	9237892	2R_9237892_SNP [dm3] 2R_13350387_SNP [dm6]	C	A	2.481e^-5	0.853	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19167471	2L_19167471_SNP [dm3] 2L_19167471_SNP [dm6]	T	C	2.517e^-5	0.853	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11367532	3R_11367532_SNP [dm3] 3R_15541810_SNP [dm6]	G	T	2.518e^-5	0.853	SYNONYMOUS_CODING CG18519 DOWNSTREAM CG6045	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3200392	2L_3200392_SNP [dm3] 2L_3200392_SNP [dm6]	T	C	2.534e^-5	0.853	UPSTREAM CG34393 INTRON CG34393
2L	3566699	2L_3566699_SNP [dm3] 2L_3566699_SNP [dm6]	G	A	2.553e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	19942334	2L_19942334_SNP [dm3] 2L_19942334_SNP [dm6]	C	T	2.559e^-5	0.853	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14908041	3R_14908041_SNP [dm3] 3R_19082319_SNP [dm6]	C	G	2.602e^-5	0.853	INTRON cdi
2R	9790047	2R_9790047_SNP [dm3] 2R_13902542_SNP [dm6]	C	A	2.605e^-5	0.853	INTRON shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1752299	2L_1752299_SNP [dm3] 2L_1752299_SNP [dm6]	A	T	2.806e^-5	0.853	UPSTREAM CG17648 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9528151	2L_9528151_SNP [dm3] 2L_9528151_SNP [dm6]	G	A	2.812e^-5	0.853	UPSTREAM CG31883 INTRON Oatp30B
3L	10999092	3L_10999092_SNP [dm3] 3L_11005992_SNP [dm6]	A	C	2.818e^-5	0.853	INTRON klu
2L	7823433	2L_7823433_SNP [dm3] 2L_7823433_SNP [dm6]	A	T	2.827e^-5	0.853	INTRON CG7115
2L	3057318	2L_3057318_DEL [dm3] 2L_3057318_DEL [dm6]	GG	G	2.840e^-5	0.853	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20447359	X_20447359_DEL [dm3] X_20576332_DEL [dm6]	AG	A	2.884e^-5	0.853	INTERGENIC	transposable element FlyBase
2L	13171914	2L_13171914_SNP [dm3] 2L_13171914_SNP [dm6]	G	T	2.894e^-5	0.853	SYNONYMOUS_CODING Sfmbt
X	8716736	X_8716736_SNP [dm3] X_8822703_SNP [dm6]	G	A	2.910e^-5	0.853	INTERGENIC
2L	19609228	2L_19609228_SNP [dm3] 2L_19609228_SNP [dm6]	G	A	3.042e^-5	0.878	INTRON Lar
3R	6851765	3R_6851765_SNP [dm3] 3R_11026043_SNP [dm6]	A	G	3.181e^-5	0.883	INTRON CG34114
3R	10349959	3R_10349959_SNP [dm3] 3R_14524237_SNP [dm6]	C	T	3.191e^-5	0.883	INTRON Pde6
3R	11369351	3R_11369351_SNP [dm3] 3R_15543629_SNP [dm6]	A	T	3.202e^-5	0.883	SYNONYMOUS_CODING CG6045	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3566705	2L_3566705_SNP [dm3] 2L_3566705_SNP [dm6]	C	A	3.312e^-5	0.9	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9525051	3L_9525051_SNP [dm3] 3L_9531951_SNP [dm6]	T	A	3.414e^-5	0.907	DOWNSTREAM Or67a INTERGENIC
3L	1741314	3L_1741314_SNP [dm3] 3L_1741314_SNP [dm6]	T	A	3.536e^-5	0.907	UPSTREAM Gk INTRON Gk	TF binding site mE1_TFBS_cad
2R	19687268	2R_19687268_SNP [dm3] 2R_23799745_SNP [dm6]	C	T	3.597e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8765664	3R_8765664_SNP [dm3] 3R_12939942_SNP [dm6]	T	C	3.715e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14581361	3L_14581361_SNP [dm3] 3L_14588261_SNP [dm6]	T	C	3.751e^-5	0.907	INTRON HGTX
3R	8768217	3R_8768217_SNP [dm3] 3R_12942495_SNP [dm6]	A	T	3.784e^-5	0.907	INTERGENIC
2R	14899481	2R_14899481_SNP [dm3] 2R_19011976_SNP [dm6]	G	T	3.804e^-5	0.907	INTERGENIC
2R	13133736	2R_13133736_SNP [dm3] 2R_17246231_SNP [dm6]	C	T	3.850e^-5	0.907	SYNONYMOUS_CODING CG18469 DOWNSTREAM CG12699 INTRON mbl
X	20873946	X_20873946_DEL [dm3] X_21002919_DEL [dm6]	CC	C	3.852e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	13133673	2R_13133673_SNP [dm3] 2R_17246168_SNP [dm6]	G	A	3.918e^-5	0.907	SYNONYMOUS_CODING CG18469 DOWNSTREAM CG12699 INTRON mbl
2L	3566715	2L_3566715_SNP [dm3] 2L_3566715_SNP [dm6]	T	A	3.951e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19693046	2R_19693046_SNP [dm3] 2R_23805523_SNP [dm6]	T	C	3.964e^-5	0.907	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1698439	3L_1698439_SNP [dm3] 3L_1698439_SNP [dm6]	G	C	4.042e^-5	0.907	INTRON CG7991
3L	14581372	3L_14581372_SNP [dm3] 3L_14588272_SNP [dm6]	C	T	4.066e^-5	0.907	INTRON HGTX
3L	15250165	3L_15250165_SNP [dm3] 3L_15257065_SNP [dm6]	C	A	4.084e^-5	0.907	INTERGENIC
2R	13133688	2R_13133688_SNP [dm3] 2R_17246183_SNP [dm6]	G	T	4.186e^-5	0.907	SYNONYMOUS_CODING CG18469 DOWNSTREAM CG12699 INTRON mbl
2L	9924005	2L_9924005_SNP [dm3] 2L_9924005_SNP [dm6]	A	C	4.314e^-5	0.907	SYNONYMOUS_CODING TbCMF46	TF binding site mE1_TFBS_cad
3R	10153727	3R_10153727_SNP [dm3] 3R_14328005_SNP [dm6]	G	A	4.337e^-5	0.907	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	5244713	2L_5244713_SNP [dm3] 2L_5244713_SNP [dm6]	G	A	4.407e^-5	0.907	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
2R	19451934	2R_19451934_SNP [dm3] 2R_23564411_SNP [dm6]	T	C	4.433e^-5	0.907	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9923302	2L_9923302_DEL [dm3] 2L_9923302_DEL [dm6]	TGGT	T	4.463e^-5	0.907	SPLICE_SITE_REGION TbCMF46 DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1741441	3L_1741441_SNP [dm3] 3L_1741441_SNP [dm6]	G	A	4.470e^-5	0.907	UPSTREAM Gk INTRON Gk	TF binding site mE1_TFBS_cad
3R	9916237	3R_9916237_SNP [dm3] 3R_14090515_SNP [dm6]	A	C	4.498e^-5	0.907	UPSTREAM Npc2b INTRON Npc2b
2L	19612401	2L_19612401_SNP [dm3] 2L_19612401_SNP [dm6]	G	A	4.547e^-5	0.907	INTRON Lar
2L	3566692	2L_3566692_SNP [dm3] 2L_3566692_SNP [dm6]	G	A	4.613e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14897935	2R_14897935_SNP [dm3] 2R_19010430_SNP [dm6]	T	C	4.631e^-5	0.907	INTERGENIC
2L	3355667	2L_3355667_DEL [dm3] 2L_3355667_DEL [dm6]	TTCT	T	4.640e^-5	0.907	UPSTREAM E23 INTERGENIC	TF binding site mE1_TFBS_Trl
X	17430389	X_17430389_SNP [dm3] X_17536356_SNP [dm6]	A	C	4.691e^-5	0.907	INTRON CG43658
2L	19611949	2L_19611949_SNP [dm3] 2L_19611949_SNP [dm6]	C	A	4.777e^-5	0.914	INTRON Lar
X	20874029	X_20874029_SNP [dm3] X_21003002_SNP [dm6]	A	G	4.848e^-5	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4656434	X_4656434_SNP [dm3] X_4762401_SNP [dm6]	A	T	4.900e^-5	0.919	INTERGENIC
2R	14899459	2R_14899459_SNP [dm3] 2R_19011954_SNP [dm6]	G	T	5.003e^-5	0.929	INTERGENIC
2R	5972892	2R_5972892_SNP [dm3] 2R_10085387_SNP [dm6]	A	G	5.087e^-5	0.935	UTR_5_PRIME CG2269 DOWNSTREAM sut4
3R	6843102	3R_6843102_SNP [dm3] 3R_11017380_SNP [dm6]	T	A	5.163e^-5	0.936	INTRON CG34114
3R	10050418	3R_10050418_SNP [dm3] 3R_14224696_SNP [dm6]	T	A	5.251e^-5	0.936	UPSTREAM Sp212 DOWNSTREAM CG9631 INTERGENIC
2L	5244675	2L_5244675_SNP [dm3] 2L_5244675_SNP [dm6]	A	G	5.262e^-5	0.936	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
2R	1044162	2R_1044162_DEL [dm3] 2R_5156657_DEL [dm6]	CTTGGC	C	5.387e^-5	0.936	INTERGENIC
3R	5949485	3R_5949485_SNP [dm3] 3R_10123763_SNP [dm6]	C	G	5.440e^-5	0.936	NON_SYNONYMOUS_CODING knk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20447505	X_20447505_DEL [dm3] X_20576478_DEL [dm6]	AAGGATATCTGACAGTCGGG...	A	5.523e^-5	0.936	INTERGENIC	transposable element FlyBase
2L	20655064	2L_20655064_SNP [dm3] 2L_20655064_SNP [dm6]	C	A	5.746e^-5	0.936	NON_SYNONYMOUS_CODING bru	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8338070	2R_8338070_SNP [dm3] 2R_12450565_SNP [dm6]	A	C	5.773e^-5	0.936	NON_SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	15228180	X_15228180_SNP [dm3] X_15334147_SNP [dm6]	A	G	5.806e^-5	0.936	UPSTREAM CG9114 & 1 other DOWNSTREAM CR44998 INTRON HDAC6
3L	7826685	3L_7826685_DEL [dm3] 3L_7833585_DEL [dm6]	AG	A	5.849e^-5	0.936	UPSTREAM Pdp1 INTRON Pdp1
2L	19610616	2L_19610616_SNP [dm3] 2L_19610616_SNP [dm6]	C	T	5.907e^-5	0.936	START_GAINED Lar UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
4	469010	4_469010_SNP [dm3] 4_448384_SNP [dm6]	A	T	5.957e^-5	0.936	INTRON CaMKI
2L	5579549	2L_5579549_DEL [dm3] 2L_5579549_DEL [dm6]	TTTAGAAAACT...	T	6.003e^-5	0.936	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8628141	2L_8628141_SNP [dm3] 2L_8628141_SNP [dm6]	A	G	6.019e^-5	0.936	INTRON Sema-1a
2R	11809964	2R_11809964_SNP [dm3] 2R_15922459_SNP [dm6]	G	C	6.094e^-5	0.936	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6148232	2L_6148232_SNP [dm3] 2L_6148232_SNP [dm6]	A	T	6.117e^-5	0.936	INTERGENIC
X	20447435	X_20447435_SNP [dm3] X_20576408_SNP [dm6]	T	G	6.118e^-5	0.936	INTERGENIC	transposable element FlyBase
2R	7664354	2R_7664354_SNP [dm3] 2R_11776849_SNP [dm6]	T	C	6.133e^-5	0.936	INTRON ths	TF binding site mE1_TFBS_inv
2L	1260531	2L_1260531_SNP [dm3] 2L_1260531_SNP [dm6]	C	T	6.153e^-5	0.936	INTRON robo3
2R	3003748	2R_3003748_SNP [dm3] 2R_7116243_SNP [dm6]	C	A	6.159e^-5	0.936	INTRON esn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6851832	3R_6851832_SNP [dm3] 3R_11026110_SNP [dm6]	C	T	6.251e^-5	0.936	INTRON CG34114
2R	14606959	2R_14606959_SNP [dm3] 2R_18719454_SNP [dm6]	C	A	6.252e^-5	0.936	UPSTREAM mir-4982 INTRON Hs3st-A
X	5016135	X_5016135_INS [dm3] X_5122102_INS [dm6]	T	TT	6.265e^-5	0.936	INTRON rg & 1 other
2R	15703669	2R_15703669_SNP [dm3] 2R_19816164_SNP [dm6]	T	C	6.423e^-5	0.936	UTR_3_PRIME Obp56h DOWNSTREAM Obp56h
X	15288170	X_15288170_SNP [dm3] X_15394137_SNP [dm6]	C	T	6.452e^-5	0.936	NON_SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
2L	3263564	2L_3263564_SNP [dm3] 2L_3263564_SNP [dm6]	T	A	6.506e^-5	0.936	DOWNSTREAM CR45706 INTERGENIC
2R	4412630	2R_4412630_SNP [dm3] 2R_8525125_SNP [dm6]	T	A	6.548e^-5	0.936	INTRON mtt
3L	2243672	3L_2243672_SNP [dm3] 3L_2243672_SNP [dm6]	G	A	6.592e^-5	0.936	UTR_3_PRIME ACXD UPSTREAM CG32301
2R	9451407	2R_9451407_SNP [dm3] 2R_13563902_SNP [dm6]	G	A	6.609e^-5	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	19163532	2L_19163532_SNP [dm3] 2L_19163532_SNP [dm6]	C	T	6.700e^-5	0.936	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7978714	X_7978714_SNP [dm3] X_8084681_SNP [dm6]	A	G	6.760e^-5	0.936	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19930210	2L_19930210_SNP [dm3] 2L_19930210_SNP [dm6]	T	C	6.813e^-5	0.936	INTRON sick
2L	3173287	2L_3173287_SNP [dm3] 2L_3173287_SNP [dm6]	C	A	6.814e^-5	0.936	UTR_3_PRIME CG31698 UPSTREAM CR44003 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5334568	2L_5334568_SNP [dm3] 2L_5334568_SNP [dm6]	A	G	6.852e^-5	0.936	INTRON fusl
2L	20699954	2L_20699954_SNP [dm3] 2L_20699954_SNP [dm6]	A	G	6.882e^-5	0.936	INTRON Hr38
2R	16479327	2R_16479327_SNP [dm3] 2R_20591822_SNP [dm6]	G	A	6.888e^-5	0.936	INTRON bl	TF binding site BDTNP1_TFBS_dl
2R	9102742	2R_9102742_SNP [dm3] 2R_13215237_SNP [dm6]	G	T	7.098e^-5	0.958	SYNONYMOUS_CODING CG4627 UPSTREAM AQP DOWNSTREAM CG4630	TF binding site BDTNP1_TFBS_dl
2R	1641614	2R_1641614_SNP [dm3] 2R_5754109_SNP [dm6]	A	G	7.219e^-5	0.958	UPSTREAM l_2_09851 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9740675	3R_9740675_SNP [dm3] 3R_13914953_SNP [dm6]	C	T	7.308e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17574139	2R_17574139_SNP [dm3] 2R_21686634_SNP [dm6]	C	G	7.327e^-5	0.958	DOWNSTREAM CG10306 INTRON Tbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19480709	2L_19480709_INS [dm3] 2L_19480709_INS [dm6]	G	GGGGAGAGTC	7.369e^-5	0.958	INTERGENIC
3R	5996682	3R_5996682_SNP [dm3] 3R_10170960_SNP [dm6]	C	A	7.420e^-5	0.958	UPSTREAM Best1 DOWNSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
3L	18549481	3L_18549481_SNP [dm3] 3L_18556381_SNP [dm6]	T	C	7.466e^-5	0.958	INTERGENIC
3R	26929383	3R_26929383_INS [dm3] 3R_31103661_INS [dm6]	A	AATATATCTCTTCATTTTAA...	7.623e^-5	0.958	INTERGENIC
2R	18453931	2R_18453931_SNP [dm3] 2R_22566426_SNP [dm6]	G	T	7.641e^-5	0.958	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7826682	3L_7826682_SNP [dm3] 3L_7833582_SNP [dm6]	T	A	7.687e^-5	0.958	UPSTREAM Pdp1 INTRON Pdp1
2R	10962434	2R_10962434_SNP [dm3] 2R_15074929_SNP [dm6]	G	A	7.692e^-5	0.958	INTERGENIC
2L	14570672	2L_14570672_SNP [dm3] 2L_14570672_SNP [dm6]	A	T	7.700e^-5	0.958	INTERGENIC
2R	9451386	2R_9451386_SNP [dm3] 2R_13563881_SNP [dm6]	C	A	7.744e^-5	0.958	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	9244249	2R_9244249_SNP [dm3] 2R_13356744_SNP [dm6]	A	C	8.098e^-5	0.958	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19505916	2L_19505916_SNP [dm3] 2L_19505916_SNP [dm6]	A	G	8.125e^-5	0.958	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22257235	3R_22257235_SNP [dm3] 3R_26431513_SNP [dm6]	G	A	8.176e^-5	0.958	INTERGENIC
2L	19159110	2L_19159110_SNP [dm3] 2L_19159110_SNP [dm6]	T	C	8.190e^-5	0.958	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5110696	X_5110696_SNP [dm3] X_5216663_SNP [dm6]	T	C	8.206e^-5	0.958	INTRON CG15465 & 1 other
3R	25978246	3R_25978246_SNP [dm3] 3R_30152524_SNP [dm6]	G	T	8.221e^-5	0.958	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8737791	3R_8737791_SNP [dm3] 3R_12912069_SNP [dm6]	C	T	8.299e^-5	0.958	UPSTREAM CG10909 INTERGENIC
2R	9146235	2R_9146235_SNP [dm3] 2R_13258730_SNP [dm6]	A	T	8.312e^-5	0.958	DOWNSTREAM CG10799 INTERGENIC
2L	9926143	2L_9926143_INS [dm3] 2L_9926143_INS [dm6]	A	AAATCAACAATATAAAACTC...	8.370e^-5	0.958	INTRON CG42366	TF binding site mE1_TFBS_cad
3R	8770846	3R_8770846_SNP [dm3] 3R_12945124_SNP [dm6]	A	G	8.384e^-5	0.958	INTERGENIC
2R	7523596	2R_7523596_SNP [dm3] 2R_11636091_SNP [dm6]	C	T	8.432e^-5	0.958	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10706504	2L_10706504_SNP [dm3] 2L_10706504_SNP [dm6]	A	T	8.440e^-5	0.958	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2L	20926149	2L_20926149_SNP [dm3] 2L_20926149_SNP [dm6]	G	A	8.481e^-5	0.958	UPSTREAM RPA2 DOWNSTREAM CG9272 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8579180	2L_8579180_SNP [dm3] 2L_8579180_SNP [dm6]	C	A	8.488e^-5	0.958	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10153502	3R_10153502_SNP [dm3] 3R_14327780_SNP [dm6]	A	G	8.490e^-5	0.958	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	12370850	2R_12370850_SNP [dm3] 2R_16483345_SNP [dm6]	A	T	8.526e^-5	0.958	INTERGENIC
2R	15703668	2R_15703668_SNP [dm3] 2R_19816163_SNP [dm6]	T	C	8.752e^-5	0.967	UTR_3_PRIME Obp56h DOWNSTREAM Obp56h
X	15289928	X_15289928_SNP [dm3] X_15395895_SNP [dm6]	A	G	8.986e^-5	0.967	INTRON Cngl
X	20447333	X_20447333_DEL [dm3] X_20576306_DEL [dm6]	TG	T	9.001e^-5	0.967	INTERGENIC	transposable element FlyBase
2L	9923358	2L_9923358_SNP [dm3] 2L_9923358_SNP [dm6]	T	A	9.044e^-5	0.967	SPLICE_SITE_REGION TbCMF46 DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	9.056e^-5	0.967	INTERGENIC
X	10225699	X_10225699_SNP [dm3] X_10331666_SNP [dm6]	A	G	9.072e^-5	0.967	UTR_5_PRIME CG15306
3L	2979271	3L_2979271_SNP [dm3] 3L_2979271_SNP [dm6]	T	G	9.101e^-5	0.967	INTERGENIC
X	4384158	X_4384158_SNP [dm3] X_4490125_SNP [dm6]	G	T	9.104e^-5	0.967	INTRON CR32773	TF binding site mE1_TFBS_Kr
3L	4900056	3L_4900056_SNP [dm3] 3L_4900056_SNP [dm6]	T	C	9.170e^-5	0.967	INTRON CG13704
2L	1259352	2L_1259352_SNP [dm3] 2L_1259352_SNP [dm6]	C	G	9.241e^-5	0.967	INTRON robo3	TF binding site mE1_TFBS_Kr
2L	20934656	2L_20934656_SNP [dm3] 2L_20934656_SNP [dm6]	A	C	9.281e^-5	0.967	UPSTREAM CG9270 INTERGENIC
2R	1583223	2R_1583223_SNP [dm3] 2R_5695718_SNP [dm6]	T	G	9.293e^-5	0.967	INTERGENIC
2L	14451655	2L_14451655_SNP [dm3] 2L_14451655_SNP [dm6]	T	C	9.298e^-5	0.967	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	3057120	2L_3057120_SNP [dm3] 2L_3057120_SNP [dm6]	A	C	9.401e^-5	0.967	DOWNSTREAM v_2_k05816 INTRON CG3523	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3057193	2L_3057193_SNP [dm3] 2L_3057193_SNP [dm6]	T	A	9.401e^-5	0.967	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	428677	2L_428677_SNP [dm3] 2L_428677_SNP [dm6]	G	T	9.512e^-5	0.967	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13172734	2R_13172734_SNP [dm3] 2R_17285229_SNP [dm6]	C	G	9.518e^-5	0.967	INTRON mbl
2L	8472987	2L_8472987_SNP [dm3] 2L_8472987_SNP [dm6]	G	A	9.591e^-5	0.967	INTRON d
X	2323089	X_2323089_SNP [dm3] X_2429056_SNP [dm6]	C	A	9.649e^-5	0.967	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	9925806	2L_9925806_SNP [dm3] 2L_9925806_SNP [dm6]	G	A	9.686e^-5	0.967	UPSTREAM TbCMF46 INTRON CG42366
2R	18943171	2R_18943171_SNP [dm3] 2R_23055648_SNP [dm6]	C	A	9.696e^-5	0.967	UTR_5_PRIME CG44252 INTRON CG44252
X	3967536	X_3967536_SNP [dm3] X_4073503_SNP [dm6]	T	C	9.808e^-5	0.973	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10999129	3L_10999129_SNP [dm3] 3L_11006029_SNP [dm6]	G	A	9.961e^-5	0.974	INTRON klu
2R	16476723	2R_16476723_SNP [dm3] 2R_20589218_SNP [dm6]	G	A	1.002e^-4	0.974	INTRON bl	TF binding site BDTNP1_TFBS_dl
3R	26129562	3R_26129562_SNP [dm3] 3R_30303840_SNP [dm6]	T	A	1.011e^-4	0.974	INTRON hdc
2R	13597064	2R_13597064_SNP [dm3] 2R_17709559_SNP [dm6]	T	A	1.035e^-4	0.974	UPSTREAM CG6424 INTRON CG6424
X	5016121	X_5016121_SNP [dm3] X_5122088_SNP [dm6]	C	A	1.047e^-4	0.974	INTRON rg & 1 other
2R	9174834	2R_9174834_SNP [dm3] 2R_13287329_SNP [dm6]	T	C	1.050e^-4	0.974	INTRON Dh31-R
2L	12672082	2L_12672082_SNP [dm3] 2L_12672082_SNP [dm6]	A	G	1.058e^-4	0.974	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	9721590	3R_9721590_SNP [dm3] 3R_13895868_SNP [dm6]	G	A	1.060e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8816107	3R_8816107_SNP [dm3] 3R_12990385_SNP [dm6]	T	C	1.063e^-4	0.974	SYNONYMOUS_CODING CG31342 UTR_3_PRIME CG31342	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5072160	2R_5072160_SNP [dm3] 2R_9184655_SNP [dm6]	G	A	1.070e^-4	0.974	DOWNSTREAM CR44284 INTRON ltd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	22493466	3R_22493466_SNP [dm3] 3R_26667744_SNP [dm6]	G	T	1.071e^-4	0.974	INTRON beat-VII
3R	22844535	3R_22844535_SNP [dm3] 3R_27018813_SNP [dm6]	C	G	1.074e^-4	0.974	SYNONYMOUS_CODING CG17191 UPSTREAM CG17192 INTRON RYa-R
2L	1087562	2L_1087562_SNP [dm3] 2L_1087562_SNP [dm6]	A	G	1.081e^-4	0.974	INTRON CG4629
2L	20934179	2L_20934179_SNP [dm3] 2L_20934179_SNP [dm6]	C	T	1.086e^-4	0.974	UPSTREAM CG9270 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2734782	2L_2734782_SNP [dm3] 2L_2734782_SNP [dm6]	C	A	1.092e^-4	0.974	INTRON CG31689
3L	14582297	3L_14582297_SNP [dm3] 3L_14589197_SNP [dm6]	A	G	1.098e^-4	0.974	INTRON HGTX
3L	18390160	3L_18390160_SNP [dm3] 3L_18397060_SNP [dm6]	A	T	1.120e^-4	0.974	DOWNSTREAM rpr INTERGENIC
2R	6295287	2R_6295287_SNP [dm3] 2R_10407782_SNP [dm6]	T	C	1.122e^-4	0.974	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
X	4787137	X_4787137_SNP [dm3] X_4893104_SNP [dm6]	A	T	1.126e^-4	0.974	INTRON CG42594
3L	9554302	3L_9554302_DEL [dm3] 3L_9561202_DEL [dm6]	CC	C	1.132e^-4	0.974	INTRON CG42673
3R	5998220	3R_5998220_SNP [dm3] 3R_10172498_SNP [dm6]	A	G	1.156e^-4	0.974	INTRON CG12814
2L	3172693	2L_3172693_SNP [dm3] 2L_3172693_SNP [dm6]	G	C	1.157e^-4	0.974	DOWNSTREAM tRNA:S7:23Ea & 1 other INTRON CR44003	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	19508477	X_19508477_SNP [dm3] X_19614444_SNP [dm6]	C	T	1.167e^-4	0.974	SPLICE_SITE_REGION Tyler & 1 other SYNONYMOUS_CODING Shawn UTR_3_PRIME Tyler	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10225886	X_10225886_SNP [dm3] X_10331853_SNP [dm6]	G	A	1.172e^-4	0.974	UPSTREAM CG15306 INTERGENIC
2L	20934666	2L_20934666_MNP [dm3] 2L_20934666_MNP [dm6]	CACT	GTTA	1.178e^-4	0.974	UPSTREAM CG9270 INTERGENIC
3R	8766324	3R_8766324_SNP [dm3] 3R_12940602_SNP [dm6]	A	C	1.184e^-4	0.974	INTERGENIC
X	20974911	X_20974911_SNP [dm3] X_21103884_SNP [dm6]	A	C	1.187e^-4	0.974	DOWNSTREAM CG1503 INTRON stg1 & 1 other
3R	4002277	3R_4002277_SNP [dm3] 3R_8176555_SNP [dm6]	T	C	1.188e^-4	0.974	INTRON grn	TF binding site BDTNP1_TFBS_dl
2L	7285284	2L_7285284_SNP [dm3] 2L_7285284_SNP [dm6]	A	G	1.189e^-4	0.974	INTERGENIC
3L	14580441	3L_14580441_SNP [dm3] 3L_14587341_SNP [dm6]	C	T	1.193e^-4	0.974	INTRON HGTX
2L	1094294	2L_1094294_SNP [dm3] 2L_1094294_SNP [dm6]	T	C	1.193e^-4	0.974	INTRON CG4629
2R	7664139	2R_7664139_SNP [dm3] 2R_11776634_SNP [dm6]	G	T	1.198e^-4	0.974	INTRON ths	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12366390	2R_12366390_SNP [dm3] 2R_16478885_SNP [dm6]	C	A	1.198e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8716727	X_8716727_DEL [dm3] X_8822694_DEL [dm6]	GTCAAG	G	1.202e^-4	0.974	INTERGENIC
3L	7208749	3L_7208749_SNP [dm3] 3L_7215649_SNP [dm6]	G	A	1.213e^-4	0.974	INTERGENIC
3L	10728652	3L_10728652_SNP [dm3] 3L_10735552_SNP [dm6]	G	T	1.213e^-4	0.974	INTERGENIC
3L	4284668	3L_4284668_SNP [dm3] 3L_4284668_SNP [dm6]	G	A	1.217e^-4	0.974	SYNONYMOUS_CODING CG1316	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens
X	21874790	X_21874790_SNP [dm3] X_22472954_SNP [dm6]	C	A	1.227e^-4	0.974	UPSTREAM CG14613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	12864217	2R_12864217_SNP [dm3] 2R_16976712_SNP [dm6]	C	G	1.230e^-4	0.974	INTRON Cbp53E
2L	12101672	2L_12101672_SNP [dm3] 2L_12101672_SNP [dm6]	T	A	1.233e^-4	0.974	SYNONYMOUS_CODING Patsas DOWNSTREAM Ced-12	TF binding site mE1_TFBS_sens
X	2776763	X_2776763_DEL [dm3] X_2882730_DEL [dm6]	TGTTGTTGTT	T	1.246e^-4	0.974	CODON_DELETION CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	10225887	X_10225887_SNP [dm3] X_10331854_SNP [dm6]	T	G	1.254e^-4	0.974	UPSTREAM CG15306 INTERGENIC
X	4536783	X_4536783_SNP [dm3] X_4642750_SNP [dm6]	C	G	1.263e^-4	0.974	INTRON CG3081 & 1 other	TF binding site mE1_TFBS_chinmo
2R	4140177	2R_4140177_SNP [dm3] 2R_8252672_SNP [dm6]	C	T	1.277e^-4	0.974	INTERGENIC
2R	11421843	2R_11421843_SNP [dm3] 2R_15534338_SNP [dm6]	G	T	1.280e^-4	0.974	INTRON CG30471
3L	12866198	3L_12866198_SNP [dm3] 3L_12873098_SNP [dm6]	G	C	1.291e^-4	0.974	INTERGENIC
2L	19163534	2L_19163534_SNP [dm3] 2L_19163534_SNP [dm6]	T	C	1.293e^-4	0.974	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6410991	2L_6410991_SNP [dm3] 2L_6410991_SNP [dm6]	C	T	1.294e^-4	0.974	START_GAINED CG42368 UTR_5_PRIME CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13143947	X_13143947_SNP [dm3] X_13249914_SNP [dm6]	T	A	1.304e^-4	0.974	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3R	9740676	3R_9740676_SNP [dm3] 3R_13914954_SNP [dm6]	A	T	1.305e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19942454	2L_19942454_SNP [dm3] 2L_19942454_SNP [dm6]	A	T	1.314e^-4	0.974	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	731915	2L_731915_SNP [dm3] 2L_731915_SNP [dm6]	C	T	1.318e^-4	0.974	INTERGENIC
2R	9248081	2R_9248081_SNP [dm3] 2R_13360576_SNP [dm6]	G	A	1.318e^-4	0.974	INTERGENIC
X	4787133	X_4787133_SNP [dm3] X_4893100_SNP [dm6]	T	G	1.320e^-4	0.974	INTRON CG42594
2L	20931647	2L_20931647_SNP [dm3] 2L_20931647_SNP [dm6]	G	C	1.323e^-4	0.974	SYNONYMOUS_CODING CG9270	TF binding site mE1_TFBS_sens
X	5897030	X_5897030_SNP [dm3] X_6002997_SNP [dm6]	T	C	1.328e^-4	0.974	INTRON CR44498
2R	18515857	2R_18515857_SNP [dm3] 2R_22628352_SNP [dm6]	T	C	1.334e^-4	0.974	INTRON CG33143
4	469009	4_469009_SNP [dm3] 4_448383_SNP [dm6]	A	T	1.338e^-4	0.974	INTRON CaMKI
2L	20934664	2L_20934664_SNP [dm3] 2L_20934664_SNP [dm6]	T	A	1.350e^-4	0.974	UPSTREAM CG9270 INTERGENIC
2L	9925063	2L_9925063_SNP [dm3] 2L_9925063_SNP [dm6]	T	A	1.356e^-4	0.974	UPSTREAM CG42366 & 1 other INTERGENIC
2L	5408288	2L_5408288_DEL [dm3] 2L_5408288_DEL [dm6]	TGCTGGGAGGAGT...	T	1.363e^-4	0.974	INTRON H15	TF binding site mE1_TFBS_cad
2L	20934672	2L_20934672_SNP [dm3] 2L_20934672_SNP [dm6]	A	T	1.365e^-4	0.974	UPSTREAM CG9270 INTERGENIC
2L	20934662	2L_20934662_SNP [dm3] 2L_20934662_SNP [dm6]	C	A	1.372e^-4	0.974	UPSTREAM CG9270 INTERGENIC
2R	19693091	2R_19693091_SNP [dm3] 2R_23805568_SNP [dm6]	G	A	1.378e^-4	0.974	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11154965	2L_11154965_INS [dm3] 2L_11154965_INS [dm6]	T	TT	1.379e^-4	0.974	INTRON CG6287
2L	9926057	2L_9926057_SNP [dm3] 2L_9926057_SNP [dm6]	C	T	1.393e^-4	0.974	INTRON CG42366
3L	7826634	3L_7826634_SNP [dm3] 3L_7833534_SNP [dm6]	A	G	1.408e^-4	0.974	UPSTREAM Pdp1 INTRON Pdp1
2L	9925951	2L_9925951_SNP [dm3] 2L_9925951_SNP [dm6]	G	A	1.420e^-4	0.974	INTRON CG42366
2R	14899324	2R_14899324_SNP [dm3] 2R_19011819_SNP [dm6]	T	C	1.422e^-4	0.974	INTERGENIC
2L	6617117	2L_6617117_SNP [dm3] 2L_6617117_SNP [dm6]	C	T	1.429e^-4	0.974	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
2R	16814227	2R_16814227_DEL [dm3] 2R_20926722_DEL [dm6]	AA	A	1.434e^-4	0.974	INTRON Rx
X	14635102	X_14635102_SNP [dm3] X_14741069_SNP [dm6]	C	A	1.436e^-4	0.974	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2R	9247877	2R_9247877_SNP [dm3] 2R_13360372_SNP [dm6]	G	A	1.443e^-4	0.974	INTERGENIC
2L	19867665	2L_19867665_SNP [dm3] 2L_19867665_SNP [dm6]	G	C	1.444e^-4	0.974	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13168580	2R_13168580_SNP [dm3] 2R_17281075_SNP [dm6]	C	G	1.458e^-4	0.974	INTRON mbl
2L	3566457	2L_3566457_SNP [dm3] 2L_3566457_SNP [dm6]	T	C	1.458e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17574137	2R_17574137_SNP [dm3] 2R_21686632_SNP [dm6]	C	T	1.461e^-4	0.974	DOWNSTREAM CG10306 INTRON Tbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6148107	2L_6148107_SNP [dm3] 2L_6148107_SNP [dm6]	A	G	1.465e^-4	0.974	INTERGENIC
2L	14664463	2L_14664463_SNP [dm3] 2L_14664463_SNP [dm6]	G	A	1.468e^-4	0.974	INTRON osp
X	18071166	X_18071166_SNP [dm3] X_18177133_SNP [dm6]	G	C	1.471e^-4	0.974	UPSTREAM Frq2 INTERGENIC
3L	19081282	3L_19081282_SNP [dm3] 3L_19088182_SNP [dm6]	T	G	1.471e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7975101	2L_7975101_SNP [dm3] 2L_7975101_SNP [dm6]	A	G	1.476e^-4	0.974	INTRON Snoo
2L	386078	2L_386078_DEL [dm3] 2L_386078_DEL [dm6]	CTCGCAGCTCCTAATCCGA...	C	1.479e^-4	0.974	INTRON al
2L	8875532	2L_8875532_INS [dm3] 2L_8875532_INS [dm6]	A	AGAGTAAAA	1.487e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19505664	2L_19505664_SNP [dm3] 2L_19505664_SNP [dm6]	C	T	1.495e^-4	0.974	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6305355	2L_6305355_SNP [dm3] 2L_6305355_SNP [dm6]	T	C	1.502e^-4	0.974	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2406538	3L_2406538_SNP [dm3] 3L_2406538_SNP [dm6]	T	A	1.502e^-4	0.974	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23478169	3R_23478169_SNP [dm3] 3R_27652447_SNP [dm6]	T	C	1.507e^-4	0.974	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	899999	3L_899999_SNP [dm3] 3L_899999_SNP [dm6]	T	C	1.514e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15280320	3R_15280320_SNP [dm3] 3R_19454598_SNP [dm6]	G	C	1.517e^-4	0.974	INTRON CG31221
X	10225884	X_10225884_SNP [dm3] X_10331851_SNP [dm6]	A	G	1.525e^-4	0.974	UPSTREAM CG15306 INTERGENIC
3R	9726662	3R_9726662_SNP [dm3] 3R_13900940_SNP [dm6]	T	C	1.528e^-4	0.974	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5063837	2R_5063837_SNP [dm3] 2R_9176332_SNP [dm6]	G	T	1.542e^-4	0.974	INTRON Rme-8
2L	10215467	2L_10215467_SNP [dm3] 2L_10215467_SNP [dm6]	C	T	1.547e^-4	0.974	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_sens
2L	5080585	2L_5080585_DEL [dm3] 2L_5080585_DEL [dm6]	AACT	A	1.556e^-4	0.974	INTRON pgant5
2L	20932274	2L_20932274_SNP [dm3] 2L_20932274_SNP [dm6]	C	T	1.556e^-4	0.974	SYNONYMOUS_CODING CG9270	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12367127	2L_12367127_SNP [dm3] 2L_12367127_SNP [dm6]	T	A	1.564e^-4	0.974	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	5579566	2L_5579566_DEL [dm3] 2L_5579566_DEL [dm6]	AGA	A	1.576e^-4	0.974	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9451405	2R_9451405_SNP [dm3] 2R_13563900_SNP [dm6]	C	T	1.578e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	11282554	2R_11282554_SNP [dm3] 2R_15395049_SNP [dm6]	G	T	1.579e^-4	0.974	INTERGENIC
2L	342394	2L_342394_SNP [dm3] 2L_342394_SNP [dm6]	T	C	1.579e^-4	0.974	INTRON Plc21C
2R	15900861	2R_15900861_SNP [dm3] 2R_20013356_SNP [dm6]	T	C	1.590e^-4	0.974	INTERGENIC
2L	20918887	2L_20918887_DEL [dm3] 2L_20918887_DEL [dm6]	CGTTT	C	1.590e^-4	0.974	UTR_5_PRIME sky & 1 other DOWNSTREAM Mtp	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9926066	2L_9926066_INS [dm3] 2L_9926066_INS [dm6]	G	TTGCCTTATTGT...	1.596e^-4	0.974	INTRON CG42366
2R	18516978	2R_18516978_DEL [dm3] 2R_22629473_DEL [dm6]	GCCGTA	G	1.603e^-4	0.974	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	11972589	2R_11972589_SNP [dm3] 2R_16085084_SNP [dm6]	G	A	1.610e^-4	0.974	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25978190	3R_25978190_SNP [dm3] 3R_30152468_SNP [dm6]	A	T	1.612e^-4	0.974	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9926034	2L_9926034_SNP [dm3] 2L_9926034_SNP [dm6]	G	A	1.617e^-4	0.974	INTRON CG42366
2L	10602880	2L_10602880_SNP [dm3] 2L_10602880_SNP [dm6]	A	C	1.617e^-4	0.974	INTRON Trim9
X	14635095	X_14635095_SNP [dm3] X_14741062_SNP [dm6]	A	T	1.620e^-4	0.974	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2R	18516931	2R_18516931_SNP [dm3] 2R_22629426_SNP [dm6]	G	A	1.620e^-4	0.974	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516933	2R_18516933_SNP [dm3] 2R_22629428_SNP [dm6]	C	T	1.620e^-4	0.974	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516965	2R_18516965_DEL [dm3] 2R_22629460_DEL [dm6]	GATTGAACC	G	1.620e^-4	0.974	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	18516988	2R_18516988_SNP [dm3] 2R_22629483_SNP [dm6]	G	A	1.620e^-4	0.974	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2L	9964079	2L_9964079_SNP [dm3] 2L_9964079_SNP [dm6]	G	A	1.622e^-4	0.974	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
3R	24300235	3R_24300235_SNP [dm3] 3R_28474513_SNP [dm6]	T	C	1.631e^-4	0.974	UTR_3_PRIME beat-VI
2L	3351683	2L_3351683_SNP [dm3] 2L_3351683_SNP [dm6]	T	C	1.640e^-4	0.974	INTRON E23
2L	6138872	2L_6138872_SNP [dm3] 2L_6138872_SNP [dm6]	G	C	1.656e^-4	0.974	UPSTREAM CG13991 EXON CR44824
2R	18943084	2R_18943084_SNP [dm3] 2R_23055561_SNP [dm6]	A	G	1.659e^-4	0.974	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
3R	26178733	3R_26178733_SNP [dm3] 3R_30353011_SNP [dm6]	T	G	1.661e^-4	0.974	INTRON hdc
2L	20929439	2L_20929439_SNP [dm3] 2L_20929439_SNP [dm6]	C	A	1.662e^-4	0.974	DOWNSTREAM CG9270 EXON CR33319	transposable element FlyBase
3R	27474287	3R_27474287_SNP [dm3] 3R_31648565_SNP [dm6]	G	A	1.678e^-4	0.974	INTRON kek6
3L	8421385	3L_8421385_SNP [dm3] 3L_8428285_SNP [dm6]	A	G	1.679e^-4	0.974	UTR_3_PRIME Cbl INTRON Cbl
X	18639514	X_18639514_SNP [dm3] X_18745481_SNP [dm6]	C	G	1.680e^-4	0.974	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
2L	12909458	2L_12909458_SNP [dm3] 2L_12909458_SNP [dm6]	G	A	1.699e^-4	0.974	INTERGENIC
2R	10603181	2R_10603181_SNP [dm3] 2R_14715676_SNP [dm6]	G	C	1.699e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12908642	2L_12908642_SNP [dm3] 2L_12908642_SNP [dm6]	A	C	1.701e^-4	0.974	INTERGENIC
3L	7966931	3L_7966931_SNP [dm3] 3L_7973831_SNP [dm6]	T	C	1.701e^-4	0.974	NON_SYNONYMOUS_CODING CG8042	TF binding site mE1_TFBS_chinmo
2L	4095181	2L_4095181_SNP [dm3] 2L_4095181_SNP [dm6]	A	C	1.707e^-4	0.974	INTRON ed	TF binding site BDTNP1_TFBS_twi
3R	14199118	3R_14199118_SNP [dm3] 3R_18373396_SNP [dm6]	G	A	1.709e^-4	0.974	UPSTREAM gl DOWNSTREAM CG14310 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23201183	3R_23201183_SNP [dm3] 3R_27375461_SNP [dm6]	G	A	1.713e^-4	0.974	UTR_3_PRIME side DOWNSTREAM side
3R	7533141	3R_7533141_SNP [dm3] 3R_11707419_SNP [dm6]	T	A	1.716e^-4	0.974	INTERGENIC
2R	11809805	2R_11809805_SNP [dm3] 2R_15922300_SNP [dm6]	C	T	1.724e^-4	0.974	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13168446	2R_13168446_SNP [dm3] 2R_17280941_SNP [dm6]	T	G	1.724e^-4	0.974	INTRON mbl
3L	9276076	3L_9276076_SNP [dm3] 3L_9282976_SNP [dm6]	C	A	1.729e^-4	0.974	SYNONYMOUS_CODING GluRIB
2L	5333862	2L_5333862_SNP [dm3] 2L_5333862_SNP [dm6]	A	G	1.743e^-4	0.974	INTRON fusl
X	20874015	X_20874015_SNP [dm3] X_21002988_SNP [dm6]	C	G	1.743e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6279969	3L_6279969_SNP [dm3] 3L_6286869_SNP [dm6]	G	T	1.751e^-4	0.974	INTERGENIC
2R	12370891	2R_12370891_SNP [dm3] 2R_16483386_SNP [dm6]	G	A	1.761e^-4	0.974	INTERGENIC
3R	2688179	3R_2688179_SNP [dm3] 3R_6862457_SNP [dm6]	C	A	1.765e^-4	0.974	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14899318	2R_14899318_SNP [dm3] 2R_19011813_SNP [dm6]	C	T	1.765e^-4	0.974	INTERGENIC
2L	1258851	2L_1258851_SNP [dm3] 2L_1258851_SNP [dm6]	G	T	1.771e^-4	0.974	INTRON robo3
2R	9259997	2R_9259997_SNP [dm3] 2R_13372492_SNP [dm6]	T	G	1.775e^-4	0.974	INTERGENIC
3L	4284665	3L_4284665_SNP [dm3] 3L_4284665_SNP [dm6]	C	T	1.776e^-4	0.974	SYNONYMOUS_CODING CG1316	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens
2L	9923356	2L_9923356_SNP [dm3] 2L_9923356_SNP [dm6]	C	T	1.788e^-4	0.974	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8770848	3R_8770848_SNP [dm3] 3R_12945126_SNP [dm6]	A	G	1.788e^-4	0.974	INTERGENIC
2L	16523619	2L_16523619_SNP [dm3] 2L_16523619_SNP [dm6]	G	A	1.790e^-4	0.974	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3R	23888607	3R_23888607_SNP [dm3] 3R_28062885_SNP [dm6]	C	T	1.791e^-4	0.974	INTRON CG34362
3R	15280539	3R_15280539_SNP [dm3] 3R_19454817_SNP [dm6]	G	T	1.807e^-4	0.974	INTRON CG31221
X	21102341	X_21102341_SNP [dm3] X_21231314_SNP [dm6]	G	T	1.808e^-4	0.974	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3R	6838117	3R_6838117_SNP [dm3] 3R_11012395_SNP [dm6]	G	A	1.817e^-4	0.974	INTRON CG34114
3L	9762460	3L_9762460_SNP [dm3] 3L_9769360_SNP [dm6]	A	T	1.820e^-4	0.974	UPSTREAM CG8177 INTRON CG8177
2L	5334634	2L_5334634_SNP [dm3] 2L_5334634_SNP [dm6]	T	C	1.828e^-4	0.974	INTRON fusl
3R	22257183	3R_22257183_SNP [dm3] 3R_26431461_SNP [dm6]	G	A	1.831e^-4	0.974	INTERGENIC
3R	8781660	3R_8781660_SNP [dm3] 3R_12955938_SNP [dm6]	G	A	1.833e^-4	0.974	INTRON grsm
3R	2687853	3R_2687853_SNP [dm3] 3R_6862131_SNP [dm6]	C	G	1.839e^-4	0.974	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19942253	2L_19942253_SNP [dm3] 2L_19942253_SNP [dm6]	C	G	1.846e^-4	0.974	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
2L	15333210	2L_15333210_SNP [dm3] 2L_15333210_SNP [dm6]	A	T	1.867e^-4	0.974	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13652394	3R_13652394_SNP [dm3] 3R_17826672_SNP [dm6]	T	C	1.868e^-4	0.974	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	4787154	X_4787154_SNP [dm3] X_4893121_SNP [dm6]	A	G	1.870e^-4	0.974	INTRON CG42594
3R	14911790	3R_14911790_SNP [dm3] 3R_19086068_SNP [dm6]	C	T	1.873e^-4	0.974	INTRON cdi	TF binding site mE1_TFBS_sens
2L	7808798	2L_7808798_SNP [dm3] 2L_7808798_SNP [dm6]	G	T	1.879e^-4	0.974	INTRON cdc14	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9923888	2L_9923888_SNP [dm3] 2L_9923888_SNP [dm6]	C	T	1.883e^-4	0.974	SYNONYMOUS_CODING TbCMF46	TF binding site mE1_TFBS_cad
2R	18616001	2R_18616001_SNP [dm3] 2R_22728496_SNP [dm6]	A	G	1.886e^-4	0.974	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26929398	3R_26929398_SNP [dm3] 3R_31103676_SNP [dm6]	G	T	1.887e^-4	0.974	INTERGENIC
2L	10718780	2L_10718780_DEL [dm3] 2L_10718780_DEL [dm6]	GA	G	1.897e^-4	0.974	INTERGENIC
3L	11334898	3L_11334898_SNP [dm3] 3L_11341798_SNP [dm6]	T	C	1.905e^-4	0.974	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9595713	2R_9595713_SNP [dm3] 2R_13708208_SNP [dm6]	A	G	1.909e^-4	0.974	INTRON fas
3R	9740665	3R_9740665_SNP [dm3] 3R_13914943_SNP [dm6]	G	C	1.910e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19166430	2L_19166430_INS [dm3] 2L_19166430_INS [dm6]	G	GGGG	1.924e^-4	0.974	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	8780661	3R_8780661_DEL [dm3] 3R_12954939_DEL [dm6]	GG	G	1.926e^-4	0.974	INTRON grsm	TF binding site mE1_TFBS_Kr
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	1.938e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25336895	3R_25336895_SNP [dm3] 3R_29511173_SNP [dm6]	G	T	1.938e^-4	0.974	INTERGENIC
3R	19170292	3R_19170292_SNP [dm3] 3R_23344570_SNP [dm6]	T	C	1.938e^-4	0.974	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8771034	3R_8771034_SNP [dm3] 3R_12945312_SNP [dm6]	A	C	1.941e^-4	0.974	INTERGENIC
3L	2335426	3L_2335426_SNP [dm3] 3L_2335426_SNP [dm6]	G	A	1.954e^-4	0.974	INTRON MsR1
2L	19391233	2L_19391233_SNP [dm3] 2L_19391233_SNP [dm6]	A	T	1.957e^-4	0.974	INTRON CG17544	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21135855	X_21135855_SNP [dm3] X_21264828_SNP [dm6]	G	A	1.958e^-4	0.974	INTRON CG32521
3R	23321962	3R_23321962_SNP [dm3] 3R_27496240_SNP [dm6]	A	G	1.959e^-4	0.974	INTERGENIC
3R	15280422	3R_15280422_SNP [dm3] 3R_19454700_SNP [dm6]	C	T	1.959e^-4	0.974	INTRON CG31221
3L	19405078	3L_19405078_SNP [dm3] 3L_19411978_SNP [dm6]	T	C	1.959e^-4	0.974	INTRON CG32206
2L	10846278	2L_10846278_SNP [dm3] 2L_10846278_SNP [dm6]	T	C	1.968e^-4	0.974	SPLICE_SITE_REGION Porin2 UPSTREAM CG17139 & 1 other DOWNSTREAM porin INTRON Porin2
2L	10846284	2L_10846284_SNP [dm3] 2L_10846284_SNP [dm6]	C	T	1.968e^-4	0.974	SPLICE_SITE_REGION Porin2 SYNONYMOUS_CODING Porin2 UPSTREAM CG17139 & 1 other DOWNSTREAM porin
3R	3955840	3R_3955840_SNP [dm3] 3R_8130118_SNP [dm6]	C	T	1.970e^-4	0.974	DOWNSTREAM Gie INTERGENIC
2R	18516913	2R_18516913_SNP [dm3] 2R_22629408_SNP [dm6]	A	T	1.970e^-4	0.974	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2L	10005926	2L_10005926_SNP [dm3] 2L_10005926_SNP [dm6]	G	A	1.972e^-4	0.974	NON_SYNONYMOUS_CODING CG4747 UPSTREAM CR44873	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19456078	2R_19456078_SNP [dm3] 2R_23568555_SNP [dm6]	C	A	1.984e^-4	0.974	INTRON apt
3R	11381333	3R_11381333_SNP [dm3] 3R_15555611_SNP [dm6]	A	G	1.984e^-4	0.974	INTERGENIC
2L	9926032	2L_9926032_SNP [dm3] 2L_9926032_SNP [dm6]	A	C	1.986e^-4	0.974	INTRON CG42366
2R	6041264	2R_6041264_SNP [dm3] 2R_10153759_SNP [dm6]	A	C	1.988e^-4	0.974	UPSTREAM CR45133 INTRON KCNQ EXON CR45133
2L	3172998	2L_3172998_SNP [dm3] 2L_3172998_SNP [dm6]	C	T	1.994e^-4	0.974	UPSTREAM CR44003 & 1 other DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15740763	2R_15740763_SNP [dm3] 2R_19853258_SNP [dm6]	A	T	2.000e^-4	0.974	INTERGENIC
3R	15280337	3R_15280337_DEL [dm3] 3R_19454615_DEL [dm6]	GT	G	2.001e^-4	0.974	INTRON CG31221
3R	15280352	3R_15280352_SNP [dm3] 3R_19454630_SNP [dm6]	T	C	2.001e^-4	0.974	INTRON CG31221
3R	15280391	3R_15280391_SNP [dm3] 3R_19454669_SNP [dm6]	T	C	2.001e^-4	0.974	INTRON CG31221
3R	15277872	3R_15277872_SNP [dm3] 3R_19452150_SNP [dm6]	A	G	2.003e^-4	0.974	INTRON CG31221
X	6389923	X_6389923_SNP [dm3] X_6495890_SNP [dm6]	A	G	2.014e^-4	0.974	INTRON CG42340
2L	19505901	2L_19505901_SNP [dm3] 2L_19505901_SNP [dm6]	C	T	2.026e^-4	0.974	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14979722	3L_14979722_SNP [dm3] 3L_14986622_SNP [dm6]	T	C	2.032e^-4	0.974	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15940819	2R_15940819_SNP [dm3] 2R_20053314_SNP [dm6]	C	T	2.047e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	20836785	X_20836785_SNP [dm3] X_20965758_SNP [dm6]	T	G	2.055e^-4	0.974	UPSTREAM CG1304 INTERGENIC
X	20607268	X_20607268_SNP [dm3] X_20736241_SNP [dm6]	G	A	2.055e^-4	0.974	UPSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5015773	X_5015773_SNP [dm3] X_5121740_SNP [dm6]	C	A	2.072e^-4	0.974	INTRON rg & 1 other
2L	19413547	2L_19413547_SNP [dm3] 2L_19413547_SNP [dm6]	C	A	2.082e^-4	0.974	INTRON Pax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16474210	2R_16474210_SNP [dm3] 2R_20586705_SNP [dm6]	A	G	2.089e^-4	0.974	SYNONYMOUS_CODING Nnf1a UPSTREAM bl	TF binding site BDTNP1_TFBS_dl
2R	18943284	2R_18943284_SNP [dm3] 2R_23055761_SNP [dm6]	G	A	2.093e^-4	0.974	INTRON CG44252
3R	26929385	3R_26929385_SNP [dm3] 3R_31103663_SNP [dm6]	A	T	2.093e^-4	0.974	INTERGENIC
2R	4130587	2R_4130587_SNP [dm3] 2R_8243082_SNP [dm6]	C	T	2.104e^-4	0.974	EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7381925	2L_7381925_SNP [dm3] 2L_7381925_SNP [dm6]	G	A	2.108e^-4	0.974	INTRON ninaC
2L	9923346	2L_9923346_SNP [dm3] 2L_9923346_SNP [dm6]	T	C	2.112e^-4	0.974	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20320656	X_20320656_SNP [dm3] X_20449629_SNP [dm6]	G	C	2.118e^-4	0.974	UTR_5_PRIME CG32506
X	2870817	X_2870817_SNP [dm3] X_2976784_SNP [dm6]	T	G	2.122e^-4	0.974	INTRON kirre
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	2.127e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	19387974	2L_19387974_SNP [dm3] 2L_19387974_SNP [dm6]	A	T	2.137e^-4	0.974	INTRON CG17549
3L	10728410	3L_10728410_SNP [dm3] 3L_10735310_SNP [dm6]	A	G	2.141e^-4	0.974	INTERGENIC
X	13143982	X_13143982_SNP [dm3] X_13249949_SNP [dm6]	T	A	2.144e^-4	0.974	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3L	10944318	3L_10944318_INS [dm3] 3L_10951218_INS [dm6]	A	AAATACAAA	2.147e^-4	0.974	INTERGENIC
3R	20433872	3R_20433872_DEL [dm3] 3R_24608150_DEL [dm6]	AA	A	2.149e^-4	0.974	INTRON mld
2L	7830005	2L_7830005_SNP [dm3] 2L_7830005_SNP [dm6]	G	A	2.151e^-4	0.974	INTRON mts	TF binding site BDTNP1_TFBS_dl
2L	916727	2L_916727_SNP [dm3] 2L_916727_SNP [dm6]	G	C	2.156e^-4	0.974	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	10225868	X_10225868_SNP [dm3] X_10331835_SNP [dm6]	G	A	2.159e^-4	0.974	UPSTREAM CG15306 INTERGENIC
2R	10018633	2R_10018633_SNP [dm3] 2R_14131128_SNP [dm6]	A	G	2.160e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6398993	2L_6398993_SNP [dm3] 2L_6398993_SNP [dm6]	T	C	2.161e^-4	0.974	INTRON CG42368
2R	12440238	2R_12440238_SNP [dm3] 2R_16552733_SNP [dm6]	A	G	2.164e^-4	0.974	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	7164558	3R_7164558_SNP [dm3] 3R_11338836_SNP [dm6]	G	C	2.164e^-4	0.974	INTRON pros
2R	6962749	2R_6962749_INS [dm3] 2R_11075244_INS [dm6]	A	AAC	2.165e^-4	0.974	INTRON luna
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	2.166e^-4	0.974	INTRON sfl
X	11853088	X_11853088_SNP [dm3] X_11959055_SNP [dm6]	G	A	2.168e^-4	0.974	INTRON cac
3L	9869352	3L_9869352_SNP [dm3] 3L_9876252_SNP [dm6]	A	G	2.176e^-4	0.974	EXON CR45406
2L	13171986	2L_13171986_SNP [dm3] 2L_13171986_SNP [dm6]	A	C	2.182e^-4	0.974	SYNONYMOUS_CODING Sfmbt
2L	6244764	2L_6244764_SNP [dm3] 2L_6244764_SNP [dm6]	G	C	2.183e^-4	0.974	INTERGENIC
2R	6295288	2R_6295288_SNP [dm3] 2R_10407783_SNP [dm6]	T	C	2.187e^-4	0.974	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
3L	17337446	3L_17337446_SNP [dm3] 3L_17344346_SNP [dm6]	C	T	2.191e^-4	0.974	SYNONYMOUS_CODING brv2 DOWNSTREAM Mip
3L	2331371	3L_2331371_SNP [dm3] 3L_2331371_SNP [dm6]	C	T	2.200e^-4	0.974	INTRON MsR1
2R	8265515	2R_8265515_SNP [dm3] 2R_12378010_SNP [dm6]	C	G	2.201e^-4	0.974	UPSTREAM Cpr49Ab DOWNSTREAM Cpr49Aa INTERGENIC	TF binding site mE1_TFBS_cad
X	14868547	X_14868547_SNP [dm3] X_14974514_SNP [dm6]	A	G	2.215e^-4	0.976	INTRON eag
2R	14899369	2R_14899369_SNP [dm3] 2R_19011864_SNP [dm6]	A	C	2.223e^-4	0.976	INTERGENIC
2L	20654396	2L_20654396_SNP [dm3] 2L_20654396_SNP [dm6]	G	A	2.224e^-4	0.976	SYNONYMOUS_CODING bru	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	6051317	2R_6051317_SNP [dm3] 2R_10163812_SNP [dm6]	T	C	2.229e^-4	0.976	INTRON KCNQ
2L	17424335	2L_17424335_SNP [dm3] 2L_17424335_SNP [dm6]	A	T	2.232e^-4	0.976	INTRON Dif
X	8716998	X_8716998_SNP [dm3] X_8822965_SNP [dm6]	T	G	2.259e^-4	0.976	INTERGENIC
2R	1582850	2R_1582850_SNP [dm3] 2R_5695345_SNP [dm6]	A	G	2.262e^-4	0.976	INTERGENIC
2R	13692855	2R_13692855_SNP [dm3] 2R_17805350_SNP [dm6]	G	A	2.262e^-4	0.976	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	957597	X_957597_SNP [dm3] X_1063564_SNP [dm6]	G	A	2.267e^-4	0.976	INTRON CR44779	TF binding site BDTNP1_TFBS_dl
3R	21951544	3R_21951544_SNP [dm3] 3R_26125822_SNP [dm6]	A	C	2.278e^-4	0.976	UPSTREAM CG14556 INTRON CG31324
2R	7523447	2R_7523447_SNP [dm3] 2R_11635942_SNP [dm6]	C	T	2.293e^-4	0.976	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16563554	2R_16563554_SNP [dm3] 2R_20676049_SNP [dm6]	A	T	2.297e^-4	0.976	INTERGENIC
2L	3172414	2L_3172414_SNP [dm3] 2L_3172414_SNP [dm6]	A	G	2.310e^-4	0.976	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	9244260	2R_9244260_SNP [dm3] 2R_13356755_SNP [dm6]	G	C	2.318e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3149846	2L_3149846_SNP [dm3] 2L_3149846_SNP [dm6]	G	A	2.322e^-4	0.976	INTRON Mad
2L	4821291	2L_4821291_DEL [dm3] 2L_4821291_DEL [dm6]	GGA	G	2.326e^-4	0.976	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14984460	2R_14984460_SNP [dm3] 2R_19096955_SNP [dm6]	T	A	2.328e^-4	0.976	UPSTREAM Ir56a INTRON 5-HT1A
3L	1399069	3L_1399069_SNP [dm3] 3L_1399069_SNP [dm6]	G	C	2.332e^-4	0.976	DOWNSTREAM tRNA:E4:62Ac & 1 other INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_sens
2R	13692391	2R_13692391_SNP [dm3] 2R_17804886_SNP [dm6]	T	C	2.334e^-4	0.976	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19159413	2L_19159413_SNP [dm3] 2L_19159413_SNP [dm6]	T	G	2.334e^-4	0.976	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
2R	19439701	2R_19439701_SNP [dm3] 2R_23552178_SNP [dm6]	C	A	2.334e^-4	0.976	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16670342	2L_16670342_SNP [dm3] 2L_16670342_SNP [dm6]	G	A	2.337e^-4	0.976	INTRON Trpgamma	TF binding site mE1_TFBS_Kr
2L	9926086	2L_9926086_DEL [dm3] 2L_9926086_DEL [dm6]	TGTTTTCAT	T	2.340e^-4	0.976	INTRON CG42366
3L	7498601	3L_7498601_SNP [dm3] 3L_7505501_SNP [dm6]	G	A	2.356e^-4	0.976	DOWNSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13734357	3L_13734357_SNP [dm3] 3L_13741257_SNP [dm6]	G	A	2.358e^-4	0.976	INTRON bru-3
2L	8865311	2L_8865311_SNP [dm3] 2L_8865311_SNP [dm6]	T	C	2.361e^-4	0.976	SYNONYMOUS_CODING CG32988 UPSTREAM CG32983 DOWNSTREAM CG32987 EXON CR45260	TF binding site mE1_TFBS_HSA
2R	8265517	2R_8265517_SNP [dm3] 2R_12378012_SNP [dm6]	G	C	2.362e^-4	0.976	UPSTREAM Cpr49Ab DOWNSTREAM Cpr49Aa INTERGENIC	TF binding site mE1_TFBS_cad
X	14635088	X_14635088_INS [dm3] X_14741055_INS [dm6]	A	AAAAA	2.362e^-4	0.976	INTRON NetB	TF binding site BDTNP1_TFBS_twi
3L	10592202	3L_10592202_SNP [dm3] 3L_10599102_SNP [dm6]	G	T	2.367e^-4	0.976	INTERGENIC
2R	11809886	2R_11809886_DEL [dm3] 2R_15922381_DEL [dm6]	GAGTAG	G	2.374e^-4	0.976	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25965841	3R_25965841_SNP [dm3] 3R_30140119_SNP [dm6]	G	A	2.395e^-4	0.976	INTRON AdoR	TF binding site mE1_TFBS_chinmo
2L	9923310	2L_9923310_SNP [dm3] 2L_9923310_SNP [dm6]	T	A	2.398e^-4	0.976	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1321061	2L_1321061_SNP [dm3] 2L_1321061_SNP [dm6]	A	G	2.406e^-4	0.976	INTERGENIC
3L	15478857	3L_15478857_SNP [dm3] 3L_15485757_SNP [dm6]	G	A	2.408e^-4	0.976	UPSTREAM Ran-like INTERGENIC
3R	15277898	3R_15277898_SNP [dm3] 3R_19452176_SNP [dm6]	A	G	2.423e^-4	0.976	INTRON CG31221
2R	14720533	2R_14720533_SNP [dm3] 2R_18833028_SNP [dm6]	C	A	2.430e^-4	0.976	SYNONYMOUS_CODING CG15082 DOWNSTREAM CG15098
X	13143983	X_13143983_SNP [dm3] X_13249950_SNP [dm6]	T	A	2.436e^-4	0.976	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3L	6621829	3L_6621829_SNP [dm3] 3L_6628729_SNP [dm6]	A	G	2.439e^-4	0.976	INTRON GluRIA
2R	9885256	2R_9885256_SNP [dm3] 2R_13997751_SNP [dm6]	T	A	2.440e^-4	0.976	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	10511533	3L_10511533_SNP [dm3] 3L_10518433_SNP [dm6]	A	G	2.443e^-4	0.976	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9923354	2L_9923354_SNP [dm3] 2L_9923354_SNP [dm6]	T	C	2.448e^-4	0.976	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9977825	3R_9977825_SNP [dm3] 3R_14152103_SNP [dm6]	T	C	2.452e^-4	0.976	UPSTREAM CG14355 DOWNSTREAM CG42500 & 1 other INTERGENIC
2R	15287461	2R_15287461_SNP [dm3] 2R_19399956_SNP [dm6]	A	G	2.453e^-4	0.976	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
3R	10153234	3R_10153234_SNP [dm3] 3R_14327512_SNP [dm6]	T	G	2.464e^-4	0.976	SYNONYMOUS_CODING CG3321 UPSTREAM Afti & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	5579453	2L_5579453_SNP [dm3] 2L_5579453_SNP [dm6]	G	A	2.466e^-4	0.976	DOWNSTREAM CG14011 INTERGENIC
3L	7427146	3L_7427146_SNP [dm3] 3L_7434046_SNP [dm6]	C	T	2.466e^-4	0.976	SYNONYMOUS_CODING Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	9595715	2R_9595715_SNP [dm3] 2R_13708210_SNP [dm6]	G	A	2.475e^-4	0.976	INTRON fas
3L	7498539	3L_7498539_SNP [dm3] 3L_7505439_SNP [dm6]	T	A	2.477e^-4	0.976	DOWNSTREAM CG7548 INTERGENIC
2L	3071323	2L_3071323_SNP [dm3] 2L_3071323_SNP [dm6]	T	C	2.497e^-4	0.976	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9102741	2R_9102741_SNP [dm3] 2R_13215236_SNP [dm6]	G	T	2.499e^-4	0.976	NON_SYNONYMOUS_CODING CG4627 UPSTREAM AQP DOWNSTREAM CG4630	TF binding site BDTNP1_TFBS_dl
2L	3056974	2L_3056974_SNP [dm3] 2L_3056974_SNP [dm6]	T	A	2.507e^-4	0.976	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20198525	3R_20198525_SNP [dm3] 3R_24372803_SNP [dm6]	C	G	2.514e^-4	0.976	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9977828	3R_9977828_SNP [dm3] 3R_14152106_SNP [dm6]	T	C	2.518e^-4	0.976	UPSTREAM CG14355 DOWNSTREAM CG42500 & 1 other INTERGENIC
2L	10819986	2L_10819986_SNP [dm3] 2L_10819986_SNP [dm6]	C	A	2.527e^-4	0.976	SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos	TF binding site mE1_TFBS_cad
2L	19486778	2L_19486778_SNP [dm3] 2L_19486778_SNP [dm6]	A	G	2.532e^-4	0.976	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC
2R	15287494	2R_15287494_SNP [dm3] 2R_19399989_SNP [dm6]	A	G	2.544e^-4	0.976	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
3L	648037	3L_648037_SNP [dm3] 3L_648037_SNP [dm6]	C	A	2.556e^-4	0.976	UPSTREAM Gale INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14672540	2L_14672540_SNP [dm3] 2L_14672540_SNP [dm6]	T	C	2.562e^-4	0.976	INTRON osp	TF binding site mE1_TFBS_HSA
3R	21629872	3R_21629872_SNP [dm3] 3R_25804150_SNP [dm6]	A	C	2.570e^-4	0.976	INTERGENIC
X	8774250	X_8774250_INS [dm3] X_8880217_INS [dm6]	A	AT	2.572e^-4	0.976	INTRON Moe	TF binding site mE1_TFBS_inv
2L	5868800	2L_5868800_SNP [dm3] 2L_5868800_SNP [dm6]	T	C	2.600e^-4	0.976	INTRON rau
2L	10155233	2L_10155233_SNP [dm3] 2L_10155233_SNP [dm6]	G	A	2.610e^-4	0.976	UTR_3_PRIME CG4839 INTRON CG44153
2L	18861173	2L_18861173_SNP [dm3] 2L_18861173_SNP [dm6]	A	G	2.621e^-4	0.976	SYNONYMOUS_CODING tup
X	1012681	X_1012681_SNP [dm3] X_1118648_SNP [dm6]	G	C	2.621e^-4	0.976	INTRON CG3655	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	8737812	3R_8737812_SNP [dm3] 3R_12912090_SNP [dm6]	C	A	2.622e^-4	0.976	UPSTREAM CG10909 INTERGENIC
2R	18516976	2R_18516976_SNP [dm3] 2R_22629471_SNP [dm6]	C	T	2.625e^-4	0.976	INTRON CG33143	TF binding site mE1_TFBS_chinmo
2R	14897840	2R_14897840_SNP [dm3] 2R_19010335_SNP [dm6]	A	T	2.630e^-4	0.976	INTERGENIC
2L	6399030	2L_6399030_SNP [dm3] 2L_6399030_SNP [dm6]	T	A	2.634e^-4	0.976	INTRON CG42368
X	19299394	X_19299394_SNP [dm3] X_19405361_SNP [dm6]	T	A	2.643e^-4	0.976	INTRON kek5
2L	9920357	2L_9920357_SNP [dm3] 2L_9920357_SNP [dm6]	T	A	2.644e^-4	0.976	UTR_5_PRIME CG4594 DOWNSTREAM CG4598
2R	17574178	2R_17574178_SNP [dm3] 2R_21686673_SNP [dm6]	G	A	2.653e^-4	0.976	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18970568	3R_18970568_SNP [dm3] 3R_23144846_SNP [dm6]	A	G	2.663e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3R	12658157	3R_12658157_SNP [dm3] 3R_16832435_SNP [dm6]	G	A	2.663e^-4	0.976	EXON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	12072463	2R_12072463_SNP [dm3] 2R_16184958_SNP [dm6]	A	C	2.666e^-4	0.976	UTR_3_PRIME Lis-1 DOWNSTREAM Lis-1 & 1 other	TF binding site mE1_TFBS_HSA
3R	8157363	3R_8157363_SNP [dm3] 3R_12331641_SNP [dm6]	T	C	2.672e^-4	0.976	INTERGENIC
3R	5227221	3R_5227221_SNP [dm3] 3R_9401499_SNP [dm6]	T	A	2.675e^-4	0.976	UTR_5_PRIME CG8132 UPSTREAM RpL34b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13283899	2R_13283899_SNP [dm3] 2R_17396394_SNP [dm6]	A	T	2.679e^-4	0.976	INTRON Sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6399034	2L_6399034_SNP [dm3] 2L_6399034_SNP [dm6]	G	T	2.683e^-4	0.976	INTRON CG42368
2R	8986451	2R_8986451_SNP [dm3] 2R_13098946_SNP [dm6]	T	G	2.689e^-4	0.976	INTERGENIC
2R	12442087	2R_12442087_SNP [dm3] 2R_16554582_SNP [dm6]	A	T	2.691e^-4	0.976	UPSTREAM Syn2 INTRON Syn2
2L	7259916	2L_7259916_SNP [dm3] 2L_7259916_SNP [dm6]	C	T	2.693e^-4	0.976	INTRON Wnt4
3R	8768150	3R_8768150_SNP [dm3] 3R_12942428_SNP [dm6]	A	G	2.709e^-4	0.976	INTERGENIC
2L	9922376	2L_9922376_SNP [dm3] 2L_9922376_SNP [dm6]	G	A	2.721e^-4	0.976	SYNONYMOUS_CODING CG4592 DOWNSTREAM CG4594 & 1 other	TF binding site mE1_TFBS_cad
2R	10833948	2R_10833948_SNP [dm3] 2R_14946443_SNP [dm6]	T	C	2.729e^-4	0.976	INTRON aPKC	TF binding site BDTNP1_TFBS_dl
2R	10833950	2R_10833950_SNP [dm3] 2R_14946445_SNP [dm6]	T	A	2.729e^-4	0.976	INTRON aPKC	TF binding site BDTNP1_TFBS_dl
3R	3101968	3R_3101968_SNP [dm3] 3R_7276246_SNP [dm6]	T	C	2.738e^-4	0.976	INTRON rn
3R	16614690	3R_16614690_SNP [dm3] 3R_20788968_SNP [dm6]	T	C	2.743e^-4	0.976	INTRON Syp
2L	9964083	2L_9964083_SNP [dm3] 2L_9964083_SNP [dm6]	T	A	2.748e^-4	0.976	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
2L	9926100	2L_9926100_SNP [dm3] 2L_9926100_SNP [dm6]	A	T	2.756e^-4	0.976	INTRON CG42366
X	21466040	X_21466040_SNP [dm3] X_21595013_SNP [dm6]	G	A	2.763e^-4	0.976	INTERGENIC
X	4065625	X_4065625_SNP [dm3] X_4171592_SNP [dm6]	T	C	2.773e^-4	0.976	INTRON Fas2	TF binding site mE1_TFBS_inv
2L	3218525	2L_3218525_SNP [dm3] 2L_3218525_SNP [dm6]	A	C	2.774e^-4	0.976	INTERGENIC
X	19299446	X_19299446_SNP [dm3] X_19405413_SNP [dm6]	T	G	2.785e^-4	0.976	INTRON kek5
2L	4026511	2L_4026511_SNP [dm3] 2L_4026511_SNP [dm6]	T	C	2.790e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_sens
2R	14632808	2R_14632808_SNP [dm3] 2R_18745303_SNP [dm6]	A	C	2.794e^-4	0.976	START_GAINED Hs3st-A UTR_5_PRIME Hs3st-A UPSTREAM CG17821
3R	6711257	3R_6711257_SNP [dm3] 3R_10885535_SNP [dm6]	A	C	2.796e^-4	0.976	UPSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4899948	3L_4899948_SNP [dm3] 3L_4899948_SNP [dm6]	T	G	2.808e^-4	0.976	INTRON CG13704
2L	6791895	2L_6791895_SNP [dm3] 2L_6791895_SNP [dm6]	C	T	2.808e^-4	0.976	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5972255	2R_5972255_SNP [dm3] 2R_10084750_SNP [dm6]	T	G	2.809e^-4	0.976	UPSTREAM CG2269 DOWNSTREAM egr & 1 other INTERGENIC
3R	6855642	3R_6855642_SNP [dm3] 3R_11029920_SNP [dm6]	C	G	2.820e^-4	0.976	INTRON CG34114
2L	15084637	2L_15084637_SNP [dm3] 2L_15084637_SNP [dm6]	A	G	2.822e^-4	0.976	INTRON CG15270
2L	14559555	2L_14559555_SNP [dm3] 2L_14559555_SNP [dm6]	T	A	2.825e^-4	0.976	UPSTREAM CR44854 INTERGENIC
3R	8796386	3R_8796386_SNP [dm3] 3R_12970664_SNP [dm6]	C	G	2.833e^-4	0.976	SYNONYMOUS_CODING CG7381 UTR_5_PRIME CG7381
2R	15951994	2R_15951994_SNP [dm3] 2R_20064489_SNP [dm6]	C	T	2.840e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	1613476	2L_1613476_SNP [dm3] 2L_1613476_SNP [dm6]	C	T	2.841e^-4	0.976	DOWNSTREAM CG14352 INTRON RFeSP	TF binding site BDTNP1_TFBS_dl
2L	9923899	2L_9923899_SNP [dm3] 2L_9923899_SNP [dm6]	C	T	2.842e^-4	0.976	NON_SYNONYMOUS_CODING TbCMF46	TF binding site mE1_TFBS_cad
2L	7823890	2L_7823890_SNP [dm3] 2L_7823890_SNP [dm6]	G	A	2.849e^-4	0.976	SYNONYMOUS_CODING CG7115
3R	21459733	3R_21459733_SNP [dm3] 3R_25634011_SNP [dm6]	T	A	2.853e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13597099	2R_13597099_SNP [dm3] 2R_17709594_SNP [dm6]	G	A	2.855e^-4	0.976	UPSTREAM CG6424 INTRON CG6424
X	4786753	X_4786753_SNP [dm3] X_4892720_SNP [dm6]	A	T	2.856e^-4	0.976	INTRON CG42594
3L	9836230	3L_9836230_SNP [dm3] 3L_9843130_SNP [dm6]	T	A	2.858e^-4	0.976	INTRON RasGAP1
3L	15590037	3L_15590037_SNP [dm3] 3L_15596937_SNP [dm6]	C	T	2.862e^-4	0.976	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
2L	19490572	2L_19490572_SNP [dm3] 2L_19490572_SNP [dm6]	A	C	2.870e^-4	0.976	NON_SYNONYMOUS_CODING CG18094 SPLICE_SITE_REGION CG18094 UPSTREAM CG10194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6412541	2L_6412541_DEL [dm3] 2L_6412541_DEL [dm6]	GG	G	2.880e^-4	0.976	UTR_5_PRIME CG13982	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15207457	2L_15207457_SNP [dm3] 2L_15207457_SNP [dm6]	T	A	2.883e^-4	0.976	UPSTREAM CR44196 INTERGENIC
3R	9838952	3R_9838952_SNP [dm3] 3R_14013230_SNP [dm6]	C	T	2.892e^-4	0.976	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	6111501	2R_6111501_SNP [dm3] 2R_10223996_SNP [dm6]	G	A	2.895e^-4	0.976	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
3L	7826788	3L_7826788_SNP [dm3] 3L_7833688_SNP [dm6]	T	A	2.900e^-4	0.976	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_Trl
X	9768926	X_9768926_SNP [dm3] X_9874893_SNP [dm6]	C	T	2.900e^-4	0.976	SYNONYMOUS_CODING CG15247 UPSTREAM CG32695	TF binding site mE1_TFBS_chinmo
2R	18516615	2R_18516615_SNP [dm3] 2R_22629110_SNP [dm6]	A	C	2.901e^-4	0.976	INTRON CG33143
3L	935441	3L_935441_SNP [dm3] 3L_935441_SNP [dm6]	A	C	2.905e^-4	0.976	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
4	483008	4_483008_SNP [dm3] 4_462382_SNP [dm6]	A	G	2.908e^-4	0.976	SPLICE_SITE_REGION bip2 DOWNSTREAM CR45126 INTRON bip2
2R	12508323	2R_12508323_SNP [dm3] 2R_16620818_SNP [dm6]	T	G	2.909e^-4	0.976	INTRON CG5065
X	20447322	X_20447322_SNP [dm3] X_20576295_SNP [dm6]	G	A	2.912e^-4	0.976	INTERGENIC	transposable element FlyBase
3R	8094057	3R_8094057_SNP [dm3] 3R_12268335_SNP [dm6]	A	G	2.912e^-4	0.976	UPSTREAM CR44039 INTRON svp
2R	9247997	2R_9247997_SNP [dm3] 2R_13360492_SNP [dm6]	T	C	2.922e^-4	0.976	INTERGENIC
3L	7426614	3L_7426614_SNP [dm3] 3L_7433514_SNP [dm6]	T	C	2.925e^-4	0.976	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7083357	2L_7083357_SNP [dm3] 2L_7083357_SNP [dm6]	A	G	2.929e^-4	0.976	SYNONYMOUS_CODING Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	648033	3L_648033_SNP [dm3] 3L_648033_SNP [dm6]	T	A	2.929e^-4	0.976	UPSTREAM Gale INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10018530	2R_10018530_SNP [dm3] 2R_14131025_SNP [dm6]	A	C	2.935e^-4	0.976	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2L	2056598	2L_2056598_SNP [dm3] 2L_2056598_SNP [dm6]	C	G	2.938e^-4	0.976	INTRON Or22c
3L	4899742	3L_4899742_SNP [dm3] 3L_4899742_SNP [dm6]	A	G	2.954e^-4	0.976	INTRON CG13704
2L	19165361	2L_19165361_DEL [dm3] 2L_19165361_DEL [dm6]	AA	A	2.960e^-4	0.976	UPSTREAM brat INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	8873532	2L_8873532_SNP [dm3] 2L_8873532_SNP [dm6]	A	C	2.962e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25560171	3R_25560171_SNP [dm3] 3R_29734449_SNP [dm6]	A	T	2.968e^-4	0.976	UTR_3_PRIME Kul DOWNSTREAM CG7601
2L	3263443	2L_3263443_SNP [dm3] 2L_3263443_SNP [dm6]	A	T	2.971e^-4	0.976	DOWNSTREAM CR45706 INTERGENIC
3L	18388564	3L_18388564_SNP [dm3] 3L_18395464_SNP [dm6]	G	A	2.971e^-4	0.976	INTERGENIC
3R	11107410	3R_11107410_SNP [dm3] 3R_15281688_SNP [dm6]	A	G	2.976e^-4	0.976	UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19166566	2L_19166566_DEL [dm3] 2L_19166566_DEL [dm6]	ATTTG	A	2.979e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4284695	3L_4284695_SNP [dm3] 3L_4284695_SNP [dm6]	T	A	2.988e^-4	0.976	SYNONYMOUS_CODING CG1316	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens
2R	18247711	2R_18247711_SNP [dm3] 2R_22360206_SNP [dm6]	T	A	2.989e^-4	0.976	INTRON Liprin-gamma
2R	7222708	2R_7222708_SNP [dm3] 2R_11335203_SNP [dm6]	G	T	2.996e^-4	0.976	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19162956	2L_19162956_SNP [dm3] 2L_19162956_SNP [dm6]	T	G	3.010e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3172315	2L_3172315_SNP [dm3] 2L_3172315_SNP [dm6]	A	G	3.024e^-4	0.976	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	12672041	2L_12672041_SNP [dm3] 2L_12672041_SNP [dm6]	A	G	3.033e^-4	0.976	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	3218520	2L_3218520_SNP [dm3] 2L_3218520_SNP [dm6]	C	T	3.035e^-4	0.976	INTERGENIC
X	21085623	X_21085623_SNP [dm3] X_21214596_SNP [dm6]	T	C	3.038e^-4	0.976	INTRON CG32521
2L	6791905	2L_6791905_SNP [dm3] 2L_6791905_SNP [dm6]	A	C	3.040e^-4	0.976	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24426096	3R_24426096_SNP [dm3] 3R_28600374_SNP [dm6]	T	C	3.048e^-4	0.976	UPSTREAM Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA
3R	23604540	3R_23604540_SNP [dm3] 3R_27778818_SNP [dm6]	C	A	3.050e^-4	0.976	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	5087651	2R_5087651_SNP [dm3] 2R_9200146_SNP [dm6]	T	G	3.066e^-4	0.976	DOWNSTREAM unpg INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	986346	2L_986346_SNP [dm3] 2L_986346_SNP [dm6]	G	C	3.069e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19166686	2L_19166686_SNP [dm3] 2L_19166686_SNP [dm6]	T	C	3.070e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	9406899	3R_9406899_SNP [dm3] 3R_13581177_SNP [dm6]	T	G	3.070e^-4	0.976	INTERGENIC
2L	19166685	2L_19166685_SNP [dm3] 2L_19166685_SNP [dm6]	A	C	3.071e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	4787064	X_4787064_SNP [dm3] X_4893031_SNP [dm6]	G	C	3.081e^-4	0.976	INTRON CG42594
2L	14062244	2L_14062244_SNP [dm3] 2L_14062244_SNP [dm6]	T	C	3.091e^-4	0.976	NON_SYNONYMOUS_CODING nAChRalpha5
3L	15590038	3L_15590038_SNP [dm3] 3L_15596938_SNP [dm6]	A	T	3.092e^-4	0.976	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
2L	6311068	2L_6311068_SNP [dm3] 2L_6311068_SNP [dm6]	G	A	3.101e^-4	0.976	INTRON Ddr
2R	14311532	2R_14311532_SNP [dm3] 2R_18424027_SNP [dm6]	C	A	3.107e^-4	0.976	INTRON CG5174
3R	21544829	3R_21544829_SNP [dm3] 3R_25719107_SNP [dm6]	A	G	3.109e^-4	0.976	INTRON LpR2
2L	9923335	2L_9923335_SNP [dm3] 2L_9923335_SNP [dm6]	T	C	3.118e^-4	0.976	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9925987	2L_9925987_SNP [dm3] 2L_9925987_SNP [dm6]	A	C	3.133e^-4	0.976	INTRON CG42366
2L	4070661	2L_4070661_SNP [dm3] 2L_4070661_SNP [dm6]	C	A	3.134e^-4	0.976	INTRON ed
3R	15280654	3R_15280654_SNP [dm3] 3R_19454932_SNP [dm6]	C	A	3.139e^-4	0.976	INTRON CG31221
2R	8897904	2R_8897904_SNP [dm3] 2R_13010399_SNP [dm6]	T	G	3.153e^-4	0.976	INTERGENIC
2L	7808879	2L_7808879_SNP [dm3] 2L_7808879_SNP [dm6]	A	T	3.159e^-4	0.976	INTRON cdc14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3057004	2L_3057004_SNP [dm3] 2L_3057004_SNP [dm6]	G	A	3.160e^-4	0.976	UTR_5_PRIME CG3523 DOWNSTREAM v_2_k05816 INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15590041	3L_15590041_SNP [dm3] 3L_15596941_SNP [dm6]	C	A	3.160e^-4	0.976	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
3L	10728379	3L_10728379_SNP [dm3] 3L_10735279_SNP [dm6]	C	A	3.161e^-4	0.976	INTERGENIC
X	5874474	X_5874474_SNP [dm3] X_5980441_SNP [dm6]	G	A	3.166e^-4	0.976	INTRON Grip
3R	8783741	3R_8783741_SNP [dm3] 3R_12958019_SNP [dm6]	T	A	3.167e^-4	0.976	INTRON grsm	TF binding site mE1_TFBS_inv
2L	19485260	2L_19485260_SNP [dm3] 2L_19485260_SNP [dm6]	G	T	3.171e^-4	0.976	NON_SYNONYMOUS_CODING CG13084 UPSTREAM CG10195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15277945	3R_15277945_SNP [dm3] 3R_19452223_SNP [dm6]	G	A	3.174e^-4	0.976	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	27212714	3R_27212714_SNP [dm3] 3R_31386992_SNP [dm6]	C	G	3.177e^-4	0.976	INTRON CG1607	TF binding site mE1_TFBS_cad
3R	9740632	3R_9740632_SNP [dm3] 3R_13914910_SNP [dm6]	G	A	3.182e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17454724	2R_17454724_DEL [dm3] 2R_21567219_DEL [dm6]	GCAGCAG	G	3.188e^-4	0.976	INTRON CG10440
2L	14452758	2L_14452758_SNP [dm3] 2L_14452758_SNP [dm6]	A	T	3.189e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	13712120	3R_13712120_SNP [dm3] 3R_17886398_SNP [dm6]	G	T	3.193e^-4	0.976	SYNONYMOUS_CODING Rim	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19694288	2R_19694288_SNP [dm3] 2R_23806765_SNP [dm6]	G	A	3.197e^-4	0.976	SYNONYMOUS_CODING Ssrp UPSTREAM CG13561 DOWNSTREAM CG5539	TF binding site mE1_TFBS_cad
2L	7540568	2L_7540568_DEL [dm3] 2L_7540568_DEL [dm6]	GT	G	3.200e^-4	0.976	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4838517	3L_4838517_SNP [dm3] 3L_4838517_SNP [dm6]	A	G	3.201e^-4	0.976	INTRON CG13707
3L	14293528	3L_14293528_SNP [dm3] 3L_14300428_SNP [dm6]	G	A	3.202e^-4	0.976	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13104787	3L_13104787_SNP [dm3] 3L_13111687_SNP [dm6]	C	T	3.207e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16103546	2R_16103546_SNP [dm3] 2R_20216041_SNP [dm6]	G	T	3.212e^-4	0.976	INTERGENIC
2R	18614945	2R_18614945_SNP [dm3] 2R_22727440_SNP [dm6]	T	C	3.214e^-4	0.976	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7426572	3L_7426572_SNP [dm3] 3L_7433472_SNP [dm6]	C	T	3.218e^-4	0.976	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7426573	3L_7426573_SNP [dm3] 3L_7433473_SNP [dm6]	A	C	3.218e^-4	0.976	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12672035	2L_12672035_SNP [dm3] 2L_12672035_SNP [dm6]	T	A	3.223e^-4	0.976	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	8344609	X_8344609_INS [dm3] X_8450576_INS [dm6]	A	ACATA	3.228e^-4	0.976	INTRON org-1
2L	5114409	2L_5114409_SNP [dm3] 2L_5114409_SNP [dm6]	T	C	3.237e^-4	0.976	INTRON Msp300
X	4787031	X_4787031_SNP [dm3] X_4892998_SNP [dm6]	T	G	3.263e^-4	0.976	INTRON CG42594
X	2323085	X_2323085_SNP [dm3] X_2429052_SNP [dm6]	G	A	3.275e^-4	0.976	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	9768202	X_9768202_SNP [dm3] X_9874169_SNP [dm6]	C	T	3.282e^-4	0.976	UPSTREAM CG32695 DOWNSTREAM CG15247 INTERGENIC
X	17611046	X_17611046_SNP [dm3] X_17717013_SNP [dm6]	T	C	3.283e^-4	0.976	INTRON CG42684
2L	731934	2L_731934_SNP [dm3] 2L_731934_SNP [dm6]	C	T	3.284e^-4	0.976	INTERGENIC
2L	4272813	2L_4272813_SNP [dm3] 2L_4272813_SNP [dm6]	G	A	3.291e^-4	0.976	INTERGENIC
3L	12886663	3L_12886663_SNP [dm3] 3L_12893563_SNP [dm6]	C	T	3.303e^-4	0.976	SYNONYMOUS_CODING CG14118	TF binding site mE1_TFBS_chinmo
2R	19644500	2R_19644500_SNP [dm3] 2R_23756977_SNP [dm6]	G	A	3.311e^-4	0.976	SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	6059215	2R_6059215_DEL [dm3] 2R_10171710_DEL [dm6]	AGCCAA	A	3.312e^-4	0.976	INTRON KCNQ
3L	827932	3L_827932_SNP [dm3] 3L_827932_SNP [dm6]	A	T	3.313e^-4	0.976	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-C788b & 3 others EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	18943090	2R_18943090_SNP [dm3] 2R_23055567_SNP [dm6]	C	T	3.335e^-4	0.976	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
2R	17353815	2R_17353815_SNP [dm3] 2R_21466310_SNP [dm6]	A	T	3.339e^-4	0.976	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3142900	3R_3142900_SNP [dm3] 3R_7317178_SNP [dm6]	A	T	3.348e^-4	0.976	UTR_5_PRIME CG10029
X	20874035	X_20874035_SNP [dm3] X_21003008_SNP [dm6]	T	C	3.348e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5341364	2R_5341364_SNP [dm3] 2R_9453859_SNP [dm6]	A	C	3.361e^-4	0.976	SPLICE_SITE_DONOR CG33758 DOWNSTREAM CG33757 INTRON Camta & 1 other
2L	7822573	2L_7822573_SNP [dm3] 2L_7822573_SNP [dm6]	C	G	3.371e^-4	0.976	INTRON CG7115
2R	19876528	2R_19876528_SNP [dm3] 2R_23989005_SNP [dm6]	G	C	3.377e^-4	0.976	NON_SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3211142	2L_3211142_SNP [dm3] 2L_3211142_SNP [dm6]	A	T	3.377e^-4	0.976	EXON CR45336
3R	8766317	3R_8766317_INS [dm3] 3R_12940595_INS [dm6]	C	CG	3.389e^-4	0.976	INTERGENIC
2R	16917333	2R_16917333_SNP [dm3] 2R_21029828_SNP [dm6]	G	C	3.400e^-4	0.976	INTRON CR45148
2R	7591233	2R_7591233_SNP [dm3] 2R_11703728_SNP [dm6]	A	T	3.404e^-4	0.976	INTERGENIC
X	9314041	X_9314041_SNP [dm3] X_9420008_SNP [dm6]	G	A	3.406e^-4	0.976	INTRON mgl
2L	3715081	2L_3715081_SNP [dm3] 2L_3715081_SNP [dm6]	C	T	3.410e^-4	0.976	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15333184	2L_15333184_SNP [dm3] 2L_15333184_SNP [dm6]	G	A	3.422e^-4	0.976	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15277967	3R_15277967_SNP [dm3] 3R_19452245_SNP [dm6]	G	C	3.442e^-4	0.976	INTRON CG31221	TF binding site mE1_TFBS_Kr
2L	16008674	2L_16008674_SNP [dm3] 2L_16008674_SNP [dm6]	A	T	3.445e^-4	0.976	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	6840130	3R_6840130_SNP [dm3] 3R_11014408_SNP [dm6]	G	T	3.447e^-4	0.976	INTRON CG34114
2L	19388021	2L_19388021_SNP [dm3] 2L_19388021_SNP [dm6]	G	T	3.449e^-4	0.976	INTRON CG17549
2L	3574569	2L_3574569_SNP [dm3] 2L_3574569_SNP [dm6]	A	G	3.459e^-4	0.976	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14524898	3L_14524898_SNP [dm3] 3L_14531798_SNP [dm6]	C	T	3.473e^-4	0.976	INTRON bbg
3R	22751690	3R_22751690_DEL [dm3] 3R_26925968_DEL [dm6]	TT	T	3.476e^-4	0.976	INTRON sda
2L	20683651	2L_20683651_SNP [dm3] 2L_20683651_SNP [dm6]	C	T	3.477e^-4	0.976	UTR_3_PRIME Hr38 DOWNSTREAM CG2617
2L	6019720	2L_6019720_SNP [dm3] 2L_6019720_SNP [dm6]	T	C	3.482e^-4	0.976	UPSTREAM H2.0 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9595256	3L_9595256_SNP [dm3] 3L_9602156_SNP [dm6]	A	G	3.496e^-4	0.976	SYNONYMOUS_CODING CG3306 UPSTREAM CG3088
2R	10962397	2R_10962397_SNP [dm3] 2R_15074892_SNP [dm6]	C	A	3.503e^-4	0.976	INTERGENIC
2L	20934940	2L_20934940_DEL [dm3] 2L_20934940_DEL [dm6]	AA	A	3.508e^-4	0.976	UPSTREAM CG9270 INTERGENIC
2L	19611310	2L_19611310_SNP [dm3] 2L_19611310_SNP [dm6]	T	C	3.516e^-4	0.976	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
3L	3934390	3L_3934390_SNP [dm3] 3L_3934390_SNP [dm6]	C	G	3.519e^-4	0.976	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
X	13176344	X_13176344_SNP [dm3] X_13282311_SNP [dm6]	C	T	3.522e^-4	0.976	INTRON HDAC4
2L	9925761	2L_9925761_SNP [dm3] 2L_9925761_SNP [dm6]	C	G	3.528e^-4	0.976	UPSTREAM TbCMF46 INTRON CG42366
3R	23992387	3R_23992387_SNP [dm3] 3R_28166665_SNP [dm6]	C	T	3.529e^-4	0.976	INTRON CG34354
2R	15787294	2R_15787294_SNP [dm3] 2R_19899789_SNP [dm6]	A	C	3.532e^-4	0.976	INTERGENIC
3L	11175463	3L_11175463_SNP [dm3] 3L_11182363_SNP [dm6]	C	A	3.540e^-4	0.976	NON_SYNONYMOUS_CODING GlcAT-P INTRON GlcAT-P
2L	12300530	2L_12300530_SNP [dm3] 2L_12300530_SNP [dm6]	T	A	3.546e^-4	0.976	INTRON aret	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	6642465	X_6642465_SNP [dm3] X_6748432_SNP [dm6]	C	A	3.553e^-4	0.976	UPSTREAM CR44964 INTRON CG14439
X	2237930	X_2237930_SNP [dm3] X_2343897_SNP [dm6]	G	C	3.562e^-4	0.976	DOWNSTREAM mRpL14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16726936	2R_16726936_SNP [dm3] 2R_20839431_SNP [dm6]	T	C	3.568e^-4	0.976	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11184510	X_11184510_DEL [dm3] X_11290477_DEL [dm6]	ATA	A	3.587e^-4	0.976	INTRON CG44422
2L	6599260	2L_6599260_MNP [dm3] 2L_6599260_MNP [dm6]	ACACAC	CTGTTT	3.593e^-4	0.976	INTRON CG11319
2L	3831043	2L_3831043_SNP [dm3] 2L_3831043_SNP [dm6]	C	A	3.597e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3683929	3L_3683929_SNP [dm3] 3L_3683929_SNP [dm6]	C	T	3.600e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11307085	3L_11307085_SNP [dm3] 3L_11313985_SNP [dm6]	A	G	3.605e^-4	0.976	DOWNSTREAM CG7573 INTERGENIC
3L	6676273	3L_6676273_SNP [dm3] 3L_6683173_SNP [dm6]	C	T	3.624e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5332774	2R_5332774_SNP [dm3] 2R_9445269_SNP [dm6]	T	C	3.624e^-4	0.976	UPSTREAM ced-6 & 1 other DOWNSTREAM CR45321 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	4187266	2L_4187266_SNP [dm3] 2L_4187266_SNP [dm6]	G	A	3.626e^-4	0.976	NON_SYNONYMOUS_CODING CG31961 UPSTREAM lectin-24Db	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_sens
X	2323677	X_2323677_SNP [dm3] X_2429644_SNP [dm6]	A	T	3.630e^-4	0.976	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4965738	X_4965738_SNP [dm3] X_5071705_SNP [dm6]	C	T	3.630e^-4	0.976	UTR_3_PRIME CG32767 DOWNSTREAM ovo
2L	19107211	2L_19107211_SNP [dm3] 2L_19107211_SNP [dm6]	C	T	3.636e^-4	0.976	UPSTREAM Lim3 INTRON Lim3
3R	26059149	3R_26059149_SNP [dm3] 3R_30233427_SNP [dm6]	G	A	3.636e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19166488	2L_19166488_SNP [dm3] 2L_19166488_SNP [dm6]	G	A	3.643e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7975064	2L_7975064_SNP [dm3] 2L_7975064_SNP [dm6]	A	G	3.646e^-4	0.976	INTRON Snoo
2R	1682324	2R_1682324_SNP [dm3] 2R_5794819_SNP [dm6]	T	A	3.651e^-4	0.976	UPSTREAM Tsp42A INTERGENIC	transposable element FlyBase
2R	13255546	2R_13255546_SNP [dm3] 2R_17368041_SNP [dm6]	C	A	3.657e^-4	0.976	INTRON mbl
2L	15228333	2L_15228333_SNP [dm3] 2L_15228333_SNP [dm6]	T	C	3.662e^-4	0.976	DOWNSTREAM ZnT35C INTERGENIC
2L	7128266	2L_7128266_SNP [dm3] 2L_7128266_SNP [dm6]	G	A	3.669e^-4	0.976	INTRON Pvf3
2L	7128267	2L_7128267_SNP [dm3] 2L_7128267_SNP [dm6]	C	G	3.669e^-4	0.976	INTRON Pvf3
3L	14583365	3L_14583365_SNP [dm3] 3L_14590265_SNP [dm6]	G	T	3.678e^-4	0.976	INTRON HGTX
3R	15829665	3R_15829665_SNP [dm3] 3R_20003943_SNP [dm6]	C	T	3.685e^-4	0.976	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
2R	12508330	2R_12508330_SNP [dm3] 2R_16620825_SNP [dm6]	C	T	3.688e^-4	0.976	INTRON CG5065
X	21102344	X_21102344_SNP [dm3] X_21231317_SNP [dm6]	C	T	3.689e^-4	0.976	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
2L	16389829	2L_16389829_SNP [dm3] 2L_16389829_SNP [dm6]	A	T	3.690e^-4	0.976	INTERGENIC
3L	736314	3L_736314_INS [dm3] 3L_736314_INS [dm6]	C	CAACAACC	3.694e^-4	0.976	DOWNSTREAM CR43785 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7736167	3R_7736167_SNP [dm3] 3R_11910445_SNP [dm6]	T	C	3.694e^-4	0.976	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16778804	2R_16778804_SNP [dm3] 2R_20891299_SNP [dm6]	G	C	3.696e^-4	0.976	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6500899	2L_6500899_SNP [dm3] 2L_6500899_SNP [dm6]	A	G	3.702e^-4	0.976	INTRON CG31637
2R	17868925	2R_17868925_DEL [dm3] 2R_21981420_DEL [dm6]	ATA	A	3.706e^-4	0.976	DOWNSTREAM Gr58a INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9127202	2L_9127202_SNP [dm3] 2L_9127202_SNP [dm6]	G	A	3.707e^-4	0.976	SYNONYMOUS_CODING CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	2239449	3L_2239449_SNP [dm3] 3L_2239449_SNP [dm6]	C	T	3.711e^-4	0.976	SYNONYMOUS_CODING ACXD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7498555	3L_7498555_SNP [dm3] 3L_7505455_SNP [dm6]	C	A	3.719e^-4	0.976	DOWNSTREAM CG7548 INTERGENIC
3R	8777792	3R_8777792_SNP [dm3] 3R_12952070_SNP [dm6]	A	T	3.723e^-4	0.976	INTRON grsm
2L	3033219	2L_3033219_SNP [dm3] 2L_3033219_SNP [dm6]	T	C	3.724e^-4	0.976	SYNONYMOUS_CODING CG17258 DOWNSTREAM GABPI
2L	6311210	2L_6311210_SNP [dm3] 2L_6311210_SNP [dm6]	T	C	3.725e^-4	0.976	INTRON Ddr
2R	4409107	2R_4409107_SNP [dm3] 2R_8521602_SNP [dm6]	T	G	3.725e^-4	0.976	UTR_5_PRIME mtt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9175198	2R_9175198_SNP [dm3] 2R_13287693_SNP [dm6]	A	C	3.728e^-4	0.976	INTRON Dh31-R
2R	4606985	2R_4606985_SNP [dm3] 2R_8719480_SNP [dm6]	G	C	3.732e^-4	0.976	SYNONYMOUS_CODING CG14767 DOWNSTREAM CG30357	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12297187	3L_12297187_SNP [dm3] 3L_12304087_SNP [dm6]	C	T	3.732e^-4	0.976	INTERGENIC
2L	9922254	2L_9922254_SNP [dm3] 2L_9922254_SNP [dm6]	T	C	3.736e^-4	0.976	DOWNSTREAM CG4594 & 1 other INTRON CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19113870	2R_19113870_INS [dm3] 2R_23226347_INS [dm6]	C	CACC	3.738e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10728372	3L_10728372_SNP [dm3] 3L_10735272_SNP [dm6]	T	C	3.746e^-4	0.976	INTERGENIC
3L	3092779	3L_3092779_SNP [dm3] 3L_3092779_SNP [dm6]	G	A	3.751e^-4	0.976	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7310074	2R_7310074_SNP [dm3] 2R_11422569_SNP [dm6]	A	G	3.757e^-4	0.976	INTRON Drip
2L	7073290	2L_7073290_SNP [dm3] 2L_7073290_SNP [dm6]	A	T	3.758e^-4	0.976	INTRON Pvf2
3L	648035	3L_648035_SNP [dm3] 3L_648035_SNP [dm6]	T	C	3.761e^-4	0.976	UPSTREAM Gale INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6273253	2L_6273253_SNP [dm3] 2L_6273253_SNP [dm6]	A	T	3.767e^-4	0.976	INTRON Ddr
2L	5333872	2L_5333872_DEL [dm3] 2L_5333872_DEL [dm6]	TT	T	3.769e^-4	0.976	INTRON fusl
3L	12866194	3L_12866194_SNP [dm3] 3L_12873094_SNP [dm6]	C	T	3.778e^-4	0.976	INTERGENIC
X	10741685	X_10741685_SNP [dm3] X_10847652_SNP [dm6]	C	A	3.781e^-4	0.976	UPSTREAM sbr INTRON CG17333	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	24242063	3R_24242063_SNP [dm3] 3R_28416341_SNP [dm6]	C	T	3.785e^-4	0.976	INTERGENIC
3L	9525021	3L_9525021_SNP [dm3] 3L_9531921_SNP [dm6]	G	A	3.788e^-4	0.976	DOWNSTREAM Or67a INTERGENIC
2L	19166948	2L_19166948_SNP [dm3] 2L_19166948_SNP [dm6]	T	C	3.793e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19081248	3L_19081248_SNP [dm3] 3L_19088148_SNP [dm6]	C	A	3.801e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18913342	2L_18913342_SNP [dm3] 2L_18913342_SNP [dm6]	G	A	3.810e^-4	0.976	INTERGENIC
3R	20985484	3R_20985484_SNP [dm3] 3R_25159762_SNP [dm6]	G	A	3.819e^-4	0.976	INTERGENIC
2L	12914686	2L_12914686_SNP [dm3] 2L_12914686_SNP [dm6]	T	C	3.824e^-4	0.976	SYNONYMOUS_CODING ACXC UTR_3_PRIME ACXC
2R	17353814	2R_17353814_SNP [dm3] 2R_21466309_SNP [dm6]	C	T	3.826e^-4	0.976	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2876011	3L_2876011_SNP [dm3] 3L_2876011_SNP [dm6]	C	T	3.828e^-4	0.976	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15277903	3R_15277903_SNP [dm3] 3R_19452181_SNP [dm6]	G	T	3.846e^-4	0.976	INTRON CG31221
2L	6519951	2L_6519951_SNP [dm3] 2L_6519951_SNP [dm6]	A	T	3.849e^-4	0.976	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21087281	X_21087281_INS [dm3] X_21216254_INS [dm6]	A	AA	3.850e^-4	0.976	INTRON CG32521	transposable element FlyBase
2R	16103580	2R_16103580_SNP [dm3] 2R_20216075_SNP [dm6]	T	C	3.861e^-4	0.976	INTERGENIC
2L	19161989	2L_19161989_SNP [dm3] 2L_19161989_SNP [dm6]	C	A	3.882e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_Trl
3L	7032687	3L_7032687_SNP [dm3] 3L_7039587_SNP [dm6]	G	C	3.887e^-4	0.976	INTRON Mp	TF binding site BDTNP1_TFBS_twi
2R	13396595	2R_13396595_INS [dm3] 2R_17509090_INS [dm6]	C	CGTGTCC	3.889e^-4	0.976	UTR_5_PRIME CG34193 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11790985	3L_11790985_SNP [dm3] 3L_11797885_SNP [dm6]	G	A	3.903e^-4	0.976	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20875540	3L_20875540_SNP [dm3] 3L_20882440_SNP [dm6]	T	C	3.904e^-4	0.976	INTRON CG32432
3R	14907988	3R_14907988_SNP [dm3] 3R_19082266_SNP [dm6]	C	T	3.909e^-4	0.976	INTRON cdi
2L	19166464	2L_19166464_INS [dm3] 2L_19166464_INS [dm6]	A	ACA	3.919e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	8717900	3R_8717900_SNP [dm3] 3R_12892178_SNP [dm6]	A	C	3.922e^-4	0.976	NON_SYNONYMOUS_CODING d-cup EXON CR44235
2L	9920413	2L_9920413_SNP [dm3] 2L_9920413_SNP [dm6]	G	C	3.925e^-4	0.976	NON_SYNONYMOUS_CODING CG4594 DOWNSTREAM CG4598
2L	3048945	2L_3048945_DEL [dm3] 2L_3048945_DEL [dm6]	TT	T	3.925e^-4	0.976	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10728434	3L_10728434_SNP [dm3] 3L_10735334_SNP [dm6]	C	T	3.928e^-4	0.976	INTERGENIC
2L	7259808	2L_7259808_SNP [dm3] 2L_7259808_SNP [dm6]	A	G	3.929e^-4	0.976	INTRON Wnt4
3R	8816655	3R_8816655_SNP [dm3] 3R_12990933_SNP [dm6]	A	T	3.933e^-4	0.976	UTR_3_PRIME CG31342 DOWNSTREAM yellow-f	TF binding site mE1_TFBS_cad
2R	19111501	2R_19111501_SNP [dm3] 2R_23223978_SNP [dm6]	G	A	3.942e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	2600914	X_2600914_SNP [dm3] X_2706881_SNP [dm6]	A	G	3.943e^-4	0.976	DOWNSTREAM eIF2B-beta INTRON CG2680	TF binding site mE1_TFBS_cad
3L	10564670	3L_10564670_SNP [dm3] 3L_10571570_SNP [dm6]	G	C	3.946e^-4	0.976	INTRON A2bp1
3L	10645237	3L_10645237_SNP [dm3] 3L_10652137_SNP [dm6]	C	T	3.947e^-4	0.976	INTRON CG32066
2L	1320902	2L_1320902_SNP [dm3] 2L_1320902_SNP [dm6]	T	A	3.953e^-4	0.976	INTERGENIC
2L	13877716	2L_13877716_SNP [dm3] 2L_13877716_SNP [dm6]	A	G	3.957e^-4	0.976	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5110660	X_5110660_SNP [dm3] X_5216627_SNP [dm6]	C	T	3.968e^-4	0.976	INTRON CG15465 & 1 other
3R	8777764	3R_8777764_SNP [dm3] 3R_12952042_SNP [dm6]	T	A	3.973e^-4	0.976	INTRON grsm
X	16906685	X_16906685_SNP [dm3] X_17012652_SNP [dm6]	T	C	3.977e^-4	0.976	INTRON CG45002
3L	14062478	3L_14062478_SNP [dm3] 3L_14069378_SNP [dm6]	A	G	3.982e^-4	0.976	UTR_3_PRIME CG32138 INTRON CG32138
2R	12055430	2R_12055430_SNP [dm3] 2R_16167925_SNP [dm6]	T	C	3.991e^-4	0.976	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19665441	X_19665441_SNP [dm3] X_19771408_SNP [dm6]	T	C	4.002e^-4	0.976	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	648053	3L_648053_SNP [dm3] 3L_648053_SNP [dm6]	T	G	4.031e^-4	0.976	UPSTREAM Gale INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5588337	2L_5588337_SNP [dm3] 2L_5588337_SNP [dm6]	G	A	4.033e^-4	0.976	UTR_5_PRIME CG7251
2R	7310026	2R_7310026_SNP [dm3] 2R_11422521_SNP [dm6]	A	T	4.034e^-4	0.976	INTRON Drip
2L	3173196	2L_3173196_SNP [dm3] 2L_3173196_SNP [dm6]	C	T	4.048e^-4	0.976	UPSTREAM CR44003 & 2 others DOWNSTREAM CG31698 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20872567	X_20872567_SNP [dm3] X_21001540_SNP [dm6]	T	G	4.051e^-4	0.976	INTERGENIC
3L	4899759	3L_4899759_SNP [dm3] 3L_4899759_SNP [dm6]	A	T	4.060e^-4	0.976	INTRON CG13704
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	4.073e^-4	0.976	INTERGENIC
2R	8986512	2R_8986512_SNP [dm3] 2R_13099007_SNP [dm6]	G	A	4.074e^-4	0.976	INTERGENIC
3L	6500527	3L_6500527_SNP [dm3] 3L_6507427_SNP [dm6]	C	T	4.076e^-4	0.976	INTRON sfl
3L	13128013	3L_13128013_SNP [dm3] 3L_13134913_SNP [dm6]	G	A	4.079e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16387255	3R_16387255_DEL [dm3] 3R_20561533_DEL [dm6]	TATTAGAAATAGAAAT...	T	4.083e^-4	0.976	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	957574	X_957574_SNP [dm3] X_1063541_SNP [dm6]	G	A	4.091e^-4	0.976	INTRON CR44779	TF binding site BDTNP1_TFBS_dl
X	957607	X_957607_SNP [dm3] X_1063574_SNP [dm6]	A	G	4.091e^-4	0.976	INTRON CR44779	TF binding site BDTNP1_TFBS_dl
3R	24473029	3R_24473029_SNP [dm3] 3R_28647307_SNP [dm6]	T	A	4.096e^-4	0.976	INTERGENIC
2R	16987266	2R_16987266_SNP [dm3] 2R_21099761_SNP [dm6]	A	C	4.096e^-4	0.976	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7974791	2L_7974791_SNP [dm3] 2L_7974791_SNP [dm6]	A	C	4.111e^-4	0.976	INTRON Snoo
2L	7128263	2L_7128263_SNP [dm3] 2L_7128263_SNP [dm6]	G	T	4.112e^-4	0.976	INTRON Pvf3
2R	10018535	2R_10018535_SNP [dm3] 2R_14131030_SNP [dm6]	C	T	4.113e^-4	0.976	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
3R	13853315	3R_13853315_SNP [dm3] 3R_18027593_SNP [dm6]	G	T	4.117e^-4	0.976	INTERGENIC
2R	14315492	2R_14315492_SNP [dm3] 2R_18427987_SNP [dm6]	C	T	4.119e^-4	0.976	NON_SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20583153	X_20583153_SNP [dm3] X_20712126_SNP [dm6]	T	C	4.126e^-4	0.976	INTERGENIC
3R	9840309	3R_9840309_SNP [dm3] 3R_14014587_SNP [dm6]	T	C	4.130e^-4	0.976	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19964062	2L_19964062_SNP [dm3] 2L_19964062_SNP [dm6]	T	A	4.130e^-4	0.976	UPSTREAM CG10680 DOWNSTREAM CG16772 EXON CR45701	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8750036	X_8750036_SNP [dm3] X_8856003_SNP [dm6]	C	T	4.136e^-4	0.976	INTRON CG12075
X	4215166	X_4215166_SNP [dm3] X_4321133_SNP [dm6]	C	T	4.140e^-4	0.976	SYNONYMOUS_CODING CG2982 DOWNSTREAM mRpL33	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9192943	3L_9192943_SNP [dm3] 3L_9199843_SNP [dm6]	G	A	4.145e^-4	0.976	INTERGENIC
3R	9459061	3R_9459061_SNP [dm3] 3R_13633339_SNP [dm6]	G	C	4.155e^-4	0.976	SYNONYMOUS_CODING CG10841
3L	9999154	3L_9999154_SNP [dm3] 3L_10006054_SNP [dm6]	A	T	4.159e^-4	0.976	INTRON dpr6
2R	9679585	2R_9679585_SNP [dm3] 2R_13792080_SNP [dm6]	G	T	4.160e^-4	0.976	EXON CR43811
X	14580401	X_14580401_SNP [dm3] X_14686368_SNP [dm6]	T	C	4.162e^-4	0.976	UTR_3_PRIME NetB
3L	12048833	3L_12048833_SNP [dm3] 3L_12055733_SNP [dm6]	C	G	4.168e^-4	0.976	SPLICE_SITE_ACCEPTOR rols START_GAINED rols UTR_5_PRIME rols INTRON rols
X	21102345	X_21102345_SNP [dm3] X_21231318_SNP [dm6]	T	G	4.180e^-4	0.976	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
2R	20312675	2R_20312675_SNP [dm3] 2R_24425152_SNP [dm6]	C	A	4.190e^-4	0.976	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12072897	3L_12072897_SNP [dm3] 3L_12079797_SNP [dm6]	T	C	4.190e^-4	0.976	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12074151	3L_12074151_SNP [dm3] 3L_12081051_SNP [dm6]	C	T	4.193e^-4	0.976	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19876458	2R_19876458_SNP [dm3] 2R_23988935_SNP [dm6]	G	T	4.197e^-4	0.976	UPSTREAM Phm INTRON Pask	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19388022	2L_19388022_SNP [dm3] 2L_19388022_SNP [dm6]	G	A	4.201e^-4	0.976	INTRON CG17549
2L	8472934	2L_8472934_INS [dm3] 2L_8472934_INS [dm6]	A	ACA	4.205e^-4	0.976	INTRON d
3R	21544822	3R_21544822_SNP [dm3] 3R_25719100_SNP [dm6]	T	G	4.208e^-4	0.976	INTRON LpR2
2L	9923079	2L_9923079_SNP [dm3] 2L_9923079_SNP [dm6]	G	A	4.209e^-4	0.976	SYNONYMOUS_CODING TbCMF46 DOWNSTREAM CG4592	TF binding site mE1_TFBS_cad
X	20447594	X_20447594_SNP [dm3] X_20576567_SNP [dm6]	T	A	4.210e^-4	0.976	INTERGENIC
3R	9972456	3R_9972456_DEL [dm3] 3R_14146734_DEL [dm6]	CAAAC	C	4.213e^-4	0.976	INTERGENIC
X	6206630	X_6206630_SNP [dm3] X_6312597_SNP [dm6]	T	C	4.223e^-4	0.976	INTRON CG15894
2R	13140694	2R_13140694_SNP [dm3] 2R_17253189_SNP [dm6]	A	C	4.230e^-4	0.976	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	12672049	2L_12672049_DEL [dm3] 2L_12672049_DEL [dm6]	GCTTACATATAACAA...	G	4.233e^-4	0.976	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	3048934	2L_3048934_DEL [dm3] 2L_3048934_DEL [dm6]	TT	T	4.235e^-4	0.976	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14808111	X_14808111_SNP [dm3] X_14914078_SNP [dm6]	T	C	4.245e^-4	0.976	UPSTREAM CG12398 INTRON Flo2
3L	10740548	3L_10740548_SNP [dm3] 3L_10747448_SNP [dm6]	C	T	4.250e^-4	0.976	INTERGENIC
3L	10728366	3L_10728366_MNP [dm3] 3L_10735266_MNP [dm6]	CTA	GCC	4.266e^-4	0.976	INTERGENIC
3L	8023060	3L_8023060_SNP [dm3] 3L_8029960_SNP [dm6]	G	A	4.271e^-4	0.976	INTRON nmo
2R	19404136	2R_19404136_DEL [dm3] 2R_23516613_DEL [dm6]	TTG	GA	4.271e^-4	0.976	INTERGENIC
2R	13587945	2R_13587945_INS [dm3] 2R_17700440_INS [dm6]	A	ATA	4.295e^-4	0.976	SPLICE_SITE_REGION Uhg1 UPSTREAM snoRNA:U29:54Ec & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 2 others INTRON Uhg1
3R	24446227	3R_24446227_SNP [dm3] 3R_28620505_SNP [dm6]	A	T	4.301e^-4	0.976	INTRON CG10011
X	15257739	X_15257739_SNP [dm3] X_15363706_SNP [dm6]	T	G	4.311e^-4	0.976	INTRON acj6
2L	5333914	2L_5333914_SNP [dm3] 2L_5333914_SNP [dm6]	A	G	4.314e^-4	0.976	INTRON fusl
3L	10728411	3L_10728411_SNP [dm3] 3L_10735311_SNP [dm6]	T	A	4.317e^-4	0.976	INTERGENIC
2L	19166502	2L_19166502_SNP [dm3] 2L_19166502_SNP [dm6]	C	T	4.327e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9938438	2L_9938438_SNP [dm3] 2L_9938438_SNP [dm6]	C	G	4.327e^-4	0.976	SYNONYMOUS_CODING Apf UPSTREAM CG4619 & 1 other EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	17037760	2R_17037760_DEL [dm3] 2R_21150255_DEL [dm6]	AA	C	4.332e^-4	0.976	INTRON CG30389
2L	19330984	2L_19330984_SNP [dm3] 2L_19330984_SNP [dm6]	T	G	4.341e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1715891	2L_1715891_SNP [dm3] 2L_1715891_SNP [dm6]	T	G	4.343e^-4	0.976	UPSTREAM frtz DOWNSTREAM Rim2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	3098060	X_3098060_INS [dm3] X_3204027_INS [dm6]	A	AG	4.346e^-4	0.976	INTRON dnc
3L	1692241	3L_1692241_SNP [dm3] 3L_1692241_SNP [dm6]	T	C	4.352e^-4	0.976	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20976403	2L_20976403_SNP [dm3] 2L_20976403_SNP [dm6]	G	T	4.354e^-4	0.976	INTRON CG42238
2L	21101842	2L_21101842_SNP [dm3] 2L_21101842_SNP [dm6]	A	G	4.354e^-4	0.976	SYNONYMOUS_CODING CG12050 UPSTREAM CG9257 DOWNSTREAM CR43809	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9244154	2R_9244154_SNP [dm3] 2R_13356649_SNP [dm6]	C	T	4.369e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10728374	3L_10728374_SNP [dm3] 3L_10735274_SNP [dm6]	T	A	4.369e^-4	0.976	INTERGENIC
2R	11114329	2R_11114329_SNP [dm3] 2R_15226824_SNP [dm6]	A	G	4.377e^-4	0.976	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad
3L	18034784	3L_18034784_SNP [dm3] 3L_18041684_SNP [dm6]	T	A	4.383e^-4	0.976	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
3R	10153655	3R_10153655_SNP [dm3] 3R_14327933_SNP [dm6]	T	A	4.386e^-4	0.976	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	16921939	2R_16921939_SNP [dm3] 2R_21034434_SNP [dm6]	A	C	4.390e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10026668	2R_10026668_SNP [dm3] 2R_14139163_SNP [dm6]	G	T	4.391e^-4	0.976	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14199101	3R_14199101_SNP [dm3] 3R_18373379_SNP [dm6]	G	A	4.393e^-4	0.976	UPSTREAM gl DOWNSTREAM CG14310 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7032043	3L_7032043_SNP [dm3] 3L_7038943_SNP [dm6]	C	G	4.398e^-4	0.976	INTRON Mp
3R	26179052	3R_26179052_SNP [dm3] 3R_30353330_SNP [dm6]	T	A	4.406e^-4	0.976	INTRON hdc
X	2323340	X_2323340_SNP [dm3] X_2429307_SNP [dm6]	T	C	4.406e^-4	0.976	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9219483	2R_9219483_SNP [dm3] 2R_13331978_SNP [dm6]	C	G	4.408e^-4	0.976	INTRON CR44206
3L	736133	3L_736133_SNP [dm3] 3L_736133_SNP [dm6]	G	A	4.409e^-4	0.976	DOWNSTREAM CR43785 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17503118	3L_17503118_DEL [dm3] 3L_17510018_DEL [dm6]	AC	A	4.410e^-4	0.976	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19963177	2L_19963177_SNP [dm3] 2L_19963177_SNP [dm6]	A	T	4.419e^-4	0.976	NON_SYNONYMOUS_CODING CG16772 UPSTREAM CG13965 & 1 other DOWNSTREAM CR45701
2L	13977366	2L_13977366_SNP [dm3] 2L_13977366_SNP [dm6]	C	T	4.427e^-4	0.976	SYNONYMOUS_CODING Cyp28a5 UPSTREAM NimC1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7426322	3L_7426322_SNP [dm3] 3L_7433222_SNP [dm6]	T	C	4.434e^-4	0.976	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	7664249	2R_7664249_SNP [dm3] 2R_11776744_SNP [dm6]	A	T	4.434e^-4	0.976	INTRON ths	TF binding site mE1_TFBS_inv
3R	9841009	3R_9841009_SNP [dm3] 3R_14015287_SNP [dm6]	A	T	4.436e^-4	0.976	INTRON rdx
3R	9723638	3R_9723638_SNP [dm3] 3R_13897916_SNP [dm6]	C	G	4.440e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	7519388	2L_7519388_INS [dm3] 2L_7519388_INS [dm6]	T	TA	4.446e^-4	0.976	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9840665	3R_9840665_SNP [dm3] 3R_14014943_SNP [dm6]	G	C	4.449e^-4	0.976	INTRON rdx
3L	10729127	3L_10729127_SNP [dm3] 3L_10736027_SNP [dm6]	A	G	4.454e^-4	0.976	INTERGENIC
3R	13652406	3R_13652406_SNP [dm3] 3R_17826684_SNP [dm6]	T	C	4.457e^-4	0.976	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10656697	3L_10656697_SNP [dm3] 3L_10663597_SNP [dm6]	A	G	4.458e^-4	0.976	DOWNSTREAM CG8003 INTRON CG32068	TF binding site BDTNP1_TFBS_dl
3L	7976018	3L_7976018_SNP [dm3] 3L_7982918_SNP [dm6]	A	T	4.466e^-4	0.976	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1617319	2L_1617319_SNP [dm3] 2L_1617319_SNP [dm6]	T	C	4.471e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	19164281	2L_19164281_SNP [dm3] 2L_19164281_SNP [dm6]	A	T	4.482e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20926776	2L_20926776_SNP [dm3] 2L_20926776_SNP [dm6]	G	T	4.482e^-4	0.976	NON_SYNONYMOUS_CODING CG9272 UPSTREAM RPA2	TF binding site BDTNP1_TFBS_Med
2R	19328784	2R_19328784_SNP [dm3] 2R_23441261_SNP [dm6]	G	A	4.487e^-4	0.976	UPSTREAM Or59a INTERGENIC
3R	13712613	3R_13712613_SNP [dm3] 3R_17886891_SNP [dm6]	C	T	4.491e^-4	0.976	INTRON Rim
3L	14068526	3L_14068526_SNP [dm3] 3L_14075426_SNP [dm6]	G	A	4.508e^-4	0.976	SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl
2L	19879532	2L_19879532_SNP [dm3] 2L_19879532_SNP [dm6]	G	C	4.519e^-4	0.976	INTRON sick
2L	7073392	2L_7073392_SNP [dm3] 2L_7073392_SNP [dm6]	G	A	4.520e^-4	0.976	INTRON Pvf2
3R	13930563	3R_13930563_DEL [dm3] 3R_18104841_DEL [dm6]	GG	G	4.520e^-4	0.976	INTRON sr
2L	16522231	2L_16522231_SNP [dm3] 2L_16522231_SNP [dm6]	C	T	4.526e^-4	0.976	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3R	25312065	3R_25312065_SNP [dm3] 3R_29486343_SNP [dm6]	G	T	4.527e^-4	0.976	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
X	11520685	X_11520685_SNP [dm3] X_11626652_SNP [dm6]	G	C	4.534e^-4	0.976	INTRON Ptp10D
2L	19387981	2L_19387981_SNP [dm3] 2L_19387981_SNP [dm6]	G	A	4.537e^-4	0.976	INTRON CG17549
2L	19388006	2L_19388006_SNP [dm3] 2L_19388006_SNP [dm6]	A	G	4.537e^-4	0.976	INTRON CG17549
X	12562681	X_12562681_SNP [dm3] X_12668648_SNP [dm6]	A	G	4.538e^-4	0.976	INTRON Tis11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6413504	2L_6413504_SNP [dm3] 2L_6413504_SNP [dm6]	G	T	4.543e^-4	0.976	NON_SYNONYMOUS_CODING CG13982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9868488	3L_9868488_SNP [dm3] 3L_9875388_SNP [dm6]	A	G	4.547e^-4	0.976	UPSTREAM CR45406 INTERGENIC
2R	14899328	2R_14899328_SNP [dm3] 2R_19011823_SNP [dm6]	T	A	4.548e^-4	0.976	INTERGENIC
3L	9291957	3L_9291957_SNP [dm3] 3L_9298857_SNP [dm6]	T	C	4.550e^-4	0.976	INTERGENIC
2L	20903503	2L_20903503_SNP [dm3] 2L_20903503_SNP [dm6]	G	A	4.576e^-4	0.976	UTR_5_PRIME sky & 1 other
2L	3048921	2L_3048921_SNP [dm3] 2L_3048921_SNP [dm6]	C	T	4.580e^-4	0.976	DOWNSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17708373	X_17708373_SNP [dm3] X_17814340_SNP [dm6]	T	A	4.587e^-4	0.976	DOWNSTREAM OdsH INTERGENIC
X	19664989	X_19664989_SNP [dm3] X_19770956_SNP [dm6]	C	T	4.589e^-4	0.976	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	10846263	2L_10846263_SNP [dm3] 2L_10846263_SNP [dm6]	C	T	4.608e^-4	0.976	UPSTREAM CG17139 & 1 other DOWNSTREAM porin INTRON Porin2
3L	935693	3L_935693_SNP [dm3] 3L_935693_SNP [dm6]	C	T	4.620e^-4	0.976	INTRON Glut1
2R	13257047	2R_13257047_SNP [dm3] 2R_17369542_SNP [dm6]	T	A	4.622e^-4	0.976	INTRON mbl
2L	3033151	2L_3033151_SNP [dm3] 2L_3033151_SNP [dm6]	G	A	4.625e^-4	0.976	DOWNSTREAM GABPI INTRON CG17258
2R	18555546	2R_18555546_SNP [dm3] 2R_22668041_SNP [dm6]	C	T	4.625e^-4	0.976	SYNONYMOUS_CODING CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
3L	7426371	3L_7426371_SNP [dm3] 3L_7433271_SNP [dm6]	A	T	4.626e^-4	0.976	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	14056966	2L_14056966_SNP [dm3] 2L_14056966_SNP [dm6]	C	A	4.630e^-4	0.976	INTRON nAChRalpha5
2R	6822007	2R_6822007_SNP [dm3] 2R_10934502_SNP [dm6]	G	T	4.645e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7696598	3L_7696598_SNP [dm3] 3L_7703498_SNP [dm6]	C	T	4.649e^-4	0.976	INTRON CG32373 & 1 other
3L	12440918	3L_12440918_SNP [dm3] 3L_12447818_SNP [dm6]	C	A	4.652e^-4	0.976	INTERGENIC
3L	17749758	3L_17749758_SNP [dm3] 3L_17756658_SNP [dm6]	T	G	4.655e^-4	0.976	SYNONYMOUS_CODING Msi INTRON Adgf-A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	20448066	X_20448066_SNP [dm3] X_20577039_SNP [dm6]	T	C	4.658e^-4	0.976	INTERGENIC
3R	19147286	3R_19147286_SNP [dm3] 3R_23321564_SNP [dm6]	A	G	4.662e^-4	0.976	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3846069	2L_3846069_DEL [dm3] 2L_3846069_DEL [dm6]	TTGCCCGCAAACGAAT...	T	4.665e^-4	0.976	UPSTREAM CR44983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14867677	X_14867677_SNP [dm3] X_14973644_SNP [dm6]	C	A	4.666e^-4	0.976	INTRON eag
2L	14559575	2L_14559575_SNP [dm3] 2L_14559575_SNP [dm6]	G	T	4.666e^-4	0.976	UPSTREAM CR44854 INTERGENIC
3R	26525582	3R_26525582_SNP [dm3] 3R_30699860_SNP [dm6]	T	G	4.670e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12367360	3L_12367360_SNP [dm3] 3L_12374260_SNP [dm6]	T	C	4.674e^-4	0.976	INTRON Ncc69	TF binding site mE1_TFBS_cad
2R	16477665	2R_16477665_SNP [dm3] 2R_20590160_SNP [dm6]	C	T	4.674e^-4	0.976	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9935385	2L_9935385_SNP [dm3] 2L_9935385_SNP [dm6]	A	G	4.681e^-4	0.976	SYNONYMOUS_CODING CG31712 UTR_3_PRIME CG31712
3L	11025053	3L_11025053_SNP [dm3] 3L_11031953_SNP [dm6]	C	T	4.689e^-4	0.976	INTERGENIC
3L	9485716	3L_9485716_SNP [dm3] 3L_9492616_SNP [dm6]	G	A	4.701e^-4	0.976	UPSTREAM CG32037 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25687903	3R_25687903_SNP [dm3] 3R_29862181_SNP [dm6]	C	A	4.702e^-4	0.976	UPSTREAM CG15514 & 1 other INTRON RpS8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	19925302	2L_19925302_SNP [dm3] 2L_19925302_SNP [dm6]	C	A	4.706e^-4	0.976	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	12222317	2R_12222317_INS [dm3] 2R_16334812_INS [dm6]	C	CCTCC	4.714e^-4	0.976	UPSTREAM Vha44 INTRON Vha44
3L	18034666	3L_18034666_SNP [dm3] 3L_18041566_SNP [dm6]	C	T	4.717e^-4	0.976	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9503630	2L_9503630_SNP [dm3] 2L_9503630_SNP [dm6]	A	C	4.718e^-4	0.976	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad
3L	5874739	3L_5874739_SNP [dm3] 3L_5881639_SNP [dm6]	T	G	4.719e^-4	0.976	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10226764	3R_10226764_SNP [dm3] 3R_14401042_SNP [dm6]	A	C	4.721e^-4	0.976	INTRON cv-c
3R	8744571	3R_8744571_SNP [dm3] 3R_12918849_SNP [dm6]	G	A	4.725e^-4	0.976	INTRON beat-Vb
3R	24415167	3R_24415167_SNP [dm3] 3R_28589445_SNP [dm6]	C	G	4.731e^-4	0.976	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17827239	3R_17827239_SNP [dm3] 3R_22001517_SNP [dm6]	G	T	4.734e^-4	0.976	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2733733	2L_2733733_SNP [dm3] 2L_2733733_SNP [dm6]	T	G	4.736e^-4	0.976	INTRON CG31689
X	21102319	X_21102319_DEL [dm3] X_21231292_DEL [dm6]	ATTAAATTCCTTAAGA...	T	4.740e^-4	0.976	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
2R	10829995	2R_10829995_SNP [dm3] 2R_14942490_SNP [dm6]	G	A	4.745e^-4	0.976	UTR_5_PRIME CG10257
3R	9862988	3R_9862988_SNP [dm3] 3R_14037266_SNP [dm6]	T	G	4.747e^-4	0.976	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4280585	2L_4280585_SNP [dm3] 2L_4280585_SNP [dm6]	G	A	4.750e^-4	0.976	INTRON Art2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16563545	2R_16563545_SNP [dm3] 2R_20676040_SNP [dm6]	C	T	4.760e^-4	0.976	INTERGENIC
3R	6867310	3R_6867310_SNP [dm3] 3R_11041588_SNP [dm6]	G	T	4.766e^-4	0.976	INTRON CG34114
X	8716420	X_8716420_SNP [dm3] X_8822387_SNP [dm6]	G	A	4.766e^-4	0.976	INTERGENIC
3L	10728361	3L_10728361_SNP [dm3] 3L_10735261_SNP [dm6]	A	T	4.774e^-4	0.976	INTERGENIC
3L	8630339	3L_8630339_DEL [dm3] 3L_8637239_DEL [dm6]	TT	T	4.778e^-4	0.976	DOWNSTREAM Zasp66 INTRON Zasp66
2L	15351502	2L_15351502_SNP [dm3] 2L_15351502_SNP [dm6]	G	C	4.779e^-4	0.976	INTERGENIC
3L	478145	3L_478145_DEL [dm3] 3L_478145_DEL [dm6]	GT	G	4.805e^-4	0.976	INTRON klar	TF binding site BDTNP1_TFBS_da
3R	21861597	3R_21861597_SNP [dm3] 3R_26035875_SNP [dm6]	T	A	4.805e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7749025	2L_7749025_SNP [dm3] 2L_7749025_SNP [dm6]	T	G	4.809e^-4	0.976	INTERGENIC
3L	13106632	3L_13106632_SNP [dm3] 3L_13113532_SNP [dm6]	G	A	4.822e^-4	0.976	UPSTREAM trn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18419081	X_18419081_SNP [dm3] X_18525048_SNP [dm6]	A	T	4.831e^-4	0.976	INTRON Bx
3L	735873	3L_735873_DEL [dm3] 3L_735873_DEL [dm6]	TCTTTT	T	4.847e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11251011	2R_11251011_SNP [dm3] 2R_15363506_SNP [dm6]	C	T	4.849e^-4	0.976	INTRON unc-5
3L	780426	3L_780426_SNP [dm3] 3L_780426_SNP [dm6]	C	A	4.857e^-4	0.976	INTERGENIC
3L	2903049	3L_2903049_SNP [dm3] 3L_2903049_SNP [dm6]	C	T	4.858e^-4	0.976	INTRON Shab
3R	9726798	3R_9726798_SNP [dm3] 3R_13901076_SNP [dm6]	G	A	4.860e^-4	0.976	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	10152472	3R_10152472_SNP [dm3] 3R_14326750_SNP [dm6]	T	G	4.876e^-4	0.976	UPSTREAM CG3321 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24473098	3R_24473098_SNP [dm3] 3R_28647376_SNP [dm6]	G	T	4.877e^-4	0.976	INTERGENIC
X	6537519	X_6537519_SNP [dm3] X_6643486_SNP [dm6]	G	A	4.880e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18419074	X_18419074_SNP [dm3] X_18525041_SNP [dm6]	A	T	4.881e^-4	0.976	INTRON Bx
4	72039	4_72039_SNP [dm3] 4_51413_SNP [dm6]	C	T	4.884e^-4	0.976	SYNONYMOUS_CODING ci	TF binding site BDTNP1_TFBS_dl
3L	3044617	3L_3044617_SNP [dm3] 3L_3044617_SNP [dm6]	T	A	4.887e^-4	0.976	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site mE1_TFBS_HSA
3R	18478950	3R_18478950_DEL [dm3] 3R_22653228_DEL [dm6]	CATTTGTAAGAATTAAATTT...	C	4.887e^-4	0.976	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3L	11273575	3L_11273575_SNP [dm3] 3L_11280475_SNP [dm6]	T	G	4.890e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16317801	2R_16317801_SNP [dm3] 2R_20430296_SNP [dm6]	T	C	4.893e^-4	0.976	INTRON CG12484
3L	6582359	3L_6582359_SNP [dm3] 3L_6589259_SNP [dm6]	T	G	4.899e^-4	0.976	INTRON CG18769 & 1 other
3R	8765387	3R_8765387_SNP [dm3] 3R_12939665_SNP [dm6]	C	G	4.901e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19388008	2L_19388008_DEL [dm3] 2L_19388008_DEL [dm6]	CAATCTATCC	C	4.902e^-4	0.976	INTRON CG17549
X	15432893	X_15432893_SNP [dm3] X_15538860_SNP [dm6]	A	C	4.903e^-4	0.976	INTRON Ac13E
2L	10911806	2L_10911806_SNP [dm3] 2L_10911806_SNP [dm6]	C	T	4.904e^-4	0.976	INTERGENIC
3R	23321926	3R_23321926_SNP [dm3] 3R_27496204_SNP [dm6]	T	C	4.906e^-4	0.976	INTERGENIC
3R	15277924	3R_15277924_SNP [dm3] 3R_19452202_SNP [dm6]	G	A	4.925e^-4	0.976	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	10728364	3L_10728364_SNP [dm3] 3L_10735264_SNP [dm6]	G	A	4.925e^-4	0.976	INTERGENIC
3R	20985560	3R_20985560_SNP [dm3] 3R_25159838_SNP [dm6]	T	A	4.941e^-4	0.976	INTERGENIC
2L	3049442	2L_3049442_SNP [dm3] 2L_3049442_SNP [dm6]	G	A	4.945e^-4	0.976	SYNONYMOUS_CODING v_2_k05816 DOWNSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5940615	3L_5940615_SNP [dm3] 3L_5947515_SNP [dm6]	T	C	4.949e^-4	0.976	INTRON CG33993	TF binding site mE1_TFBS_cad
2L	6019543	2L_6019543_SNP [dm3] 2L_6019543_SNP [dm6]	A	C	4.951e^-4	0.976	UPSTREAM H2.0 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19324713	2L_19324713_SNP [dm3] 2L_19324713_SNP [dm6]	A	G	4.955e^-4	0.976	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7540560	2L_7540560_SNP [dm3] 2L_7540560_SNP [dm6]	G	A	4.955e^-4	0.976	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21952939	3R_21952939_SNP [dm3] 3R_26127217_SNP [dm6]	G	C	4.967e^-4	0.976	NON_SYNONYMOUS_CODING CG14556 INTRON CG31324	TF binding site mE1_TFBS_HSA
3L	22460153	3L_22460153_SNP [dm3] 3L_22467053_SNP [dm6]	A	G	4.974e^-4	0.976	SYNONYMOUS_CODING CG11438	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15869463	3L_15869463_SNP [dm3] 3L_15876363_SNP [dm6]	G	C	4.986e^-4	0.976	INTRON pHCl EXON CR44051
2L	9893769	2L_9893769_SNP [dm3] 2L_9893769_SNP [dm6]	A	G	4.987e^-4	0.976	UPSTREAM mtDNA-helicase DOWNSTREAM Uhg2 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5749856	3R_5749856_SNP [dm3] 3R_9924134_SNP [dm6]	C	G	5.000e^-4	0.976	INTRON Glut4EF
2L	18907635	2L_18907635_SNP [dm3] 2L_18907635_SNP [dm6]	G	A	5.001e^-4	0.976	DOWNSTREAM CR44738 INTERGENIC
2L	9920052	2L_9920052_SNP [dm3] 2L_9920052_SNP [dm6]	T	G	5.002e^-4	0.976	UTR_3_PRIME CG4598 UPSTREAM CG4594 DOWNSTREAM CG4598
X	8716511	X_8716511_SNP [dm3] X_8822478_SNP [dm6]	C	A	5.008e^-4	0.976	INTERGENIC
3L	2867036	3L_2867036_SNP [dm3] 3L_2867036_SNP [dm6]	G	A	5.009e^-4	0.976	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19123063	2L_19123063_SNP [dm3] 2L_19123063_SNP [dm6]	C	G	5.011e^-4	0.976	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
3R	20995832	3R_20995832_SNP [dm3] 3R_25170110_SNP [dm6]	T	C	5.025e^-4	0.976	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15931537	2R_15931537_SNP [dm3] 2R_20044032_SNP [dm6]	T	C	5.026e^-4	0.976	INTERGENIC
2R	15931538	2R_15931538_SNP [dm3] 2R_20044033_SNP [dm6]	T	C	5.026e^-4	0.976	INTERGENIC
2L	19164363	2L_19164363_SNP [dm3] 2L_19164363_SNP [dm6]	G	C	5.030e^-4	0.976	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15277887	3R_15277887_SNP [dm3] 3R_19452165_SNP [dm6]	A	G	5.035e^-4	0.976	INTRON CG31221
X	17708382	X_17708382_SNP [dm3] X_17814349_SNP [dm6]	C	A	5.042e^-4	0.976	DOWNSTREAM OdsH INTERGENIC
2R	16477768	2R_16477768_SNP [dm3] 2R_20590263_SNP [dm6]	C	T	5.046e^-4	0.976	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20198321	3R_20198321_SNP [dm3] 3R_24372599_SNP [dm6]	G	A	5.048e^-4	0.976	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG17781	TF binding site mE1_TFBS_chinmo
2L	7259039	2L_7259039_SNP [dm3] 2L_7259039_SNP [dm6]	T	C	5.050e^-4	0.976	DOWNSTREAM CG31909 INTRON Wnt4
3L	14195897	3L_14195897_SNP [dm3] 3L_14202797_SNP [dm6]	A	T	5.062e^-4	0.976	UPSTREAM CG32141 INTRON nuf
2L	15333153	2L_15333153_SNP [dm3] 2L_15333153_SNP [dm6]	A	C	5.081e^-4	0.976	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10049498	3L_10049498_SNP [dm3] 3L_10056398_SNP [dm6]	G	A	5.094e^-4	0.976	INTRON dpr6
2L	12927097	2L_12927097_DEL [dm3] 2L_12927097_DEL [dm6]	AA	A	5.095e^-4	0.976	INTRON ACXE
X	11745297	X_11745297_DEL [dm3] X_11851264_DEL [dm6]	GG	G	5.101e^-4	0.976	UTR_3_PRIME p24-1 DOWNSTREAM p24-1
3R	9380947	3R_9380947_SNP [dm3] 3R_13555225_SNP [dm6]	C	A	5.105e^-4	0.976	INTERGENIC
2L	15486641	2L_15486641_SNP [dm3] 2L_15486641_SNP [dm6]	T	A	5.107e^-4	0.976	UPSTREAM CR45293 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19123022	2L_19123022_DEL [dm3] 2L_19123022_DEL [dm6]	TG	T	5.109e^-4	0.976	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2R	7310004	2R_7310004_SNP [dm3] 2R_11422499_SNP [dm6]	T	G	5.112e^-4	0.976	INTRON Drip
3L	9393267	3L_9393267_SNP [dm3] 3L_9400167_SNP [dm6]	A	G	5.114e^-4	0.976	SYNONYMOUS_CODING eIF-4E UPSTREAM CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14897968	2R_14897968_SNP [dm3] 2R_19010463_SNP [dm6]	T	C	5.115e^-4	0.976	INTERGENIC
2L	5579270	2L_5579270_SNP [dm3] 2L_5579270_SNP [dm6]	A	T	5.119e^-4	0.976	DOWNSTREAM CG14011 INTERGENIC
2L	5579271	2L_5579271_DEL [dm3] 2L_5579271_DEL [dm6]	TA	T	5.119e^-4	0.976	DOWNSTREAM CG14011 INTERGENIC
3L	10894030	3L_10894030_SNP [dm3] 3L_10900930_SNP [dm6]	A	G	5.131e^-4	0.976	INTERGENIC
X	14108017	X_14108017_INS [dm3] X_14213984_INS [dm6]	C	CTT	5.149e^-4	0.976	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12269613	2R_12269613_SNP [dm3] 2R_16382108_SNP [dm6]	G	T	5.150e^-4	0.976	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3L	388695	3L_388695_SNP [dm3] 3L_388695_SNP [dm6]	C	A	5.158e^-4	0.976	INTRON trh
2R	2598684	2R_2598684_SNP [dm3] 2R_6711179_SNP [dm6]	A	G	5.160e^-4	0.976	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1614831	2L_1614831_SNP [dm3] 2L_1614831_SNP [dm6]	C	T	5.160e^-4	0.976	UPSTREAM RFeSP INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7426378	3L_7426378_SNP [dm3] 3L_7433278_SNP [dm6]	G	C	5.163e^-4	0.976	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	8370900	2L_8370900_SNP [dm3] 2L_8370900_SNP [dm6]	C	G	5.173e^-4	0.976	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
X	4750070	X_4750070_SNP [dm3] X_4856037_SNP [dm6]	T	C	5.176e^-4	0.976	INTRON CG42594
2R	4465741	2R_4465741_SNP [dm3] 2R_8578236_SNP [dm6]	G	A	5.178e^-4	0.976	SYNONYMOUS_CODING CG42326 INTRON CG42326
2R	16158454	2R_16158454_SNP [dm3] 2R_20270949_SNP [dm6]	C	G	5.178e^-4	0.976	UTR_3_PRIME CG8908 DOWNSTREAM CG10444
3L	4899991	3L_4899991_SNP [dm3] 3L_4899991_SNP [dm6]	C	T	5.181e^-4	0.976	INTRON CG13704
3L	2231416	3L_2231416_SNP [dm3] 3L_2231416_SNP [dm6]	C	T	5.183e^-4	0.976	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2231425	3L_2231425_SNP [dm3] 3L_2231425_SNP [dm6]	C	T	5.183e^-4	0.976	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10152463	3R_10152463_SNP [dm3] 3R_14326741_SNP [dm6]	C	G	5.187e^-4	0.976	UPSTREAM CG3321 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19014088	3R_19014088_SNP [dm3] 3R_23188366_SNP [dm6]	G	T	5.200e^-4	0.976	SYNONYMOUS_CODING cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27228314	3R_27228314_SNP [dm3] 3R_31402592_SNP [dm6]	T	C	5.208e^-4	0.976	DOWNSTREAM Gcn2 INTRON CG11337	TF binding site mE1_TFBS_cad
3L	2231383	3L_2231383_SNP [dm3] 3L_2231383_SNP [dm6]	G	A	5.211e^-4	0.976	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16521967	2L_16521967_SNP [dm3] 2L_16521967_SNP [dm6]	T	G	5.214e^-4	0.976	INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17206871	3R_17206871_SNP [dm3] 3R_21381149_SNP [dm6]	C	T	5.219e^-4	0.976	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	10140270	3R_10140270_SNP [dm3] 3R_14314548_SNP [dm6]	G	T	5.222e^-4	0.976	UPSTREAM Crz DOWNSTREAM CG31321 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	4782308	X_4782308_SNP [dm3] X_4888275_SNP [dm6]	T	C	5.231e^-4	0.976	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15225871	2R_15225871_INS [dm3] 2R_19338366_INS [dm6]	G	GTTTGCTGCGGTTCGAGGCC...	5.241e^-4	0.976	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
4	461098	4_461098_SNP [dm3] 4_440472_SNP [dm6]	A	T	5.246e^-4	0.976	SYNONYMOUS_CODING lgs
3R	16695267	3R_16695267_SNP [dm3] 3R_20869545_SNP [dm6]	G	A	5.250e^-4	0.976	INTERGENIC
3R	21861576	3R_21861576_SNP [dm3] 3R_26035854_SNP [dm6]	A	G	5.252e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7589825	3R_7589825_INS [dm3] 3R_11764103_INS [dm6]	T	TT	5.267e^-4	0.976	UTR_5_PRIME Lk6 DOWNSTREAM l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	1588846	2R_1588846_SNP [dm3] 2R_5701341_SNP [dm6]	T	G	5.276e^-4	0.976	UPSTREAM vlc INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

mn_Resp_1_Hexanol phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results