DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.949e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07534

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2717 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	12999077	3R_12999077_SNP [dm3] 3R_17173355_SNP [dm6]	T	A	1.917e^-7	0.178	INTRON Mur89F
3R	12994092	3R_12994092_SNP [dm3] 3R_17168370_SNP [dm6]	A	T	2.522e^-7	0.178	INTRON Mur89F	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12989550	3R_12989550_SNP [dm3] 3R_17163828_SNP [dm6]	T	A	4.649e^-7	0.178	INTRON Mur89F
3R	12998833	3R_12998833_DEL [dm3] 3R_17173111_DEL [dm6]	TCAGA	C	5.230e^-7	0.178	INTRON Mur89F
3R	12994111	3R_12994111_SNP [dm3] 3R_17168389_SNP [dm6]	T	G	5.461e^-7	0.178	INTRON Mur89F	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12998517	3R_12998517_SNP [dm3] 3R_17172795_SNP [dm6]	A	T	6.679e^-7	0.178	INTRON Mur89F
3R	13004916	3R_13004916_SNP [dm3] 3R_17179194_SNP [dm6]	G	A	7.074e^-7	0.178	INTRON Mur89F
3R	12999178	3R_12999178_SNP [dm3] 3R_17173456_SNP [dm6]	T	A	7.609e^-7	0.178	INTRON Mur89F
X	5725042	X_5725042_SNP [dm3] X_5831009_SNP [dm6]	T	A	8.812e^-7	0.184	DOWNSTREAM CR43264 INTRON CG15765
3R	12993794	3R_12993794_SNP [dm3] 3R_17168072_SNP [dm6]	G	A	9.918e^-7	0.186	INTRON Mur89F
3R	12989396	3R_12989396_SNP [dm3] 3R_17163674_SNP [dm6]	G	C	1.346e^-6	0.202	INTRON Mur89F
3L	19043600	3L_19043600_SNP [dm3] 3L_19050500_SNP [dm6]	C	G	1.394e^-6	0.202	DOWNSTREAM Acp76A INTERGENIC
2L	3993299	2L_3993299_SNP [dm3] 2L_3993299_SNP [dm6]	G	T	1.511e^-6	0.202	INTERGENIC
3R	12998815	3R_12998815_SNP [dm3] 3R_17173093_SNP [dm6]	G	A	1.523e^-6	0.202	INTRON Mur89F
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	1.683e^-6	0.202	DOWNSTREAM CR43264 INTRON CG15765
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	1.811e^-6	0.202	DOWNSTREAM CR43264 INTRON CG15765
3R	25463591	3R_25463591_SNP [dm3] 3R_29637869_SNP [dm6]	C	T	1.828e^-6	0.202	INTRON Dop1R2
2L	9311446	2L_9311446_SNP [dm3] 2L_9311446_SNP [dm6]	A	G	2.030e^-6	0.202	INTERGENIC
3R	8083320	3R_8083320_SNP [dm3] 3R_12257598_SNP [dm6]	G	A	2.146e^-6	0.202	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12984799	3R_12984799_SNP [dm3] 3R_17159077_SNP [dm6]	G	A	2.210e^-6	0.202	SYNONYMOUS_CODING Mur89F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13002427	3R_13002427_SNP [dm3] 3R_17176705_SNP [dm6]	C	T	2.262e^-6	0.202	INTRON Mur89F
2L	6330099	2L_6330099_SNP [dm3] 2L_6330099_SNP [dm6]	T	C	2.582e^-6	0.22	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3R	12989269	3R_12989269_SNP [dm3] 3R_17163547_SNP [dm6]	A	T	2.966e^-6	0.242	INTRON Mur89F
3R	20410068	3R_20410068_SNP [dm3] 3R_24584346_SNP [dm6]	C	T	3.210e^-6	0.251	SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5881190	3L_5881190_SNP [dm3] 3L_5888090_SNP [dm6]	T	A	3.688e^-6	0.269	INTERGENIC
3R	13005036	3R_13005036_SNP [dm3] 3R_17179314_SNP [dm6]	G	A	3.734e^-6	0.269	INTRON Mur89F
3L	19043594	3L_19043594_SNP [dm3] 3L_19050494_SNP [dm6]	C	T	4.152e^-6	0.278	DOWNSTREAM Acp76A INTERGENIC
3L	19043597	3L_19043597_INS [dm3] 3L_19050497_INS [dm6]	T	TA	4.152e^-6	0.278	DOWNSTREAM Acp76A INTERGENIC
3R	13810644	3R_13810644_DEL [dm3] 3R_17984922_DEL [dm6]	CGGTCCGAAATG...	C	4.450e^-6	0.288	INTRON cpo
3R	12990249	3R_12990249_SNP [dm3] 3R_17164527_SNP [dm6]	C	T	4.729e^-6	0.291	INTRON Mur89F
3R	12989315	3R_12989315_SNP [dm3] 3R_17163593_SNP [dm6]	T	C	4.937e^-6	0.291	INTRON Mur89F
3R	12999103	3R_12999103_SNP [dm3] 3R_17173381_SNP [dm6]	A	C	5.251e^-6	0.291	INTRON Mur89F
3R	12990431	3R_12990431_SNP [dm3] 3R_17164709_SNP [dm6]	C	T	5.348e^-6	0.291	INTRON Mur89F
3R	12989251	3R_12989251_SNP [dm3] 3R_17163529_SNP [dm6]	G	T	5.544e^-6	0.291	INTRON Mur89F
2R	9608642	2R_9608642_SNP [dm3] 2R_13721137_SNP [dm6]	T	A	5.659e^-6	0.291	INTRON fas
3R	12999641	3R_12999641_SNP [dm3] 3R_17173919_SNP [dm6]	A	G	5.749e^-6	0.291	INTRON Mur89F
2L	5160509	2L_5160509_SNP [dm3] 2L_5160509_SNP [dm6]	C	T	5.749e^-6	0.291	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8897771	2R_8897771_SNP [dm3] 2R_13010266_SNP [dm6]	C	T	5.960e^-6	0.293	INTERGENIC
X	11119047	X_11119047_DEL [dm3] X_11225014_DEL [dm6]	CTTCTGATGC	C	6.178e^-6	0.293	CODON_DELETION CG44422 UTR_3_PRIME CG44422	TF binding site mE1_TFBS_chinmo
3L	16273752	3L_16273752_SNP [dm3] 3L_16280652_SNP [dm6]	C	A	6.241e^-6	0.293	SYNONYMOUS_CODING CG13064 DOWNSTREAM CG13049
3R	27272298	3R_27272298_SNP [dm3] 3R_31446576_SNP [dm6]	T	G	6.829e^-6	0.309	INTRON Gprk2
3R	12998860	3R_12998860_SNP [dm3] 3R_17173138_SNP [dm6]	C	T	6.981e^-6	0.309	INTRON Mur89F
3R	20410128	3R_20410128_SNP [dm3] 3R_24584406_SNP [dm6]	C	T	7.296e^-6	0.309	SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
3R	12986477	3R_12986477_SNP [dm3] 3R_17160755_SNP [dm6]	C	T	7.507e^-6	0.309	INTRON Mur89F
3R	27272280	3R_27272280_SNP [dm3] 3R_31446558_SNP [dm6]	G	A	7.591e^-6	0.309	INTRON Gprk2
3R	6157287	3R_6157287_SNP [dm3] 3R_10331565_SNP [dm6]	C	T	7.743e^-6	0.309	UPSTREAM CG12818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	12476921	3L_12476921_SNP [dm3] 3L_12483821_SNP [dm6]	G	A	7.912e^-6	0.309	INTRON CG10663 & 1 other
3L	19043563	3L_19043563_SNP [dm3] 3L_19050463_SNP [dm6]	T	C	8.077e^-6	0.309	DOWNSTREAM Acp76A INTERGENIC
2L	8568256	2L_8568256_SNP [dm3] 2L_8568256_SNP [dm6]	G	A	8.082e^-6	0.309	INTRON Sema-1a
2L	9239515	2L_9239515_SNP [dm3] 2L_9239515_SNP [dm6]	C	T	8.796e^-6	0.33	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7837668	3L_7837668_SNP [dm3] 3L_7844568_SNP [dm6]	T	C	9.347e^-6	0.337	INTRON Pdp1	regulatory region REDfly_CRMs
3R	12986349	3R_12986349_SNP [dm3] 3R_17160627_SNP [dm6]	G	C	9.365e^-6	0.337	INTRON Mur89F
3L	19043580	3L_19043580_SNP [dm3] 3L_19050480_SNP [dm6]	A	C	9.531e^-6	0.337	DOWNSTREAM Acp76A INTERGENIC
3L	19043654	3L_19043654_SNP [dm3] 3L_19050554_SNP [dm6]	T	A	9.806e^-6	0.341	DOWNSTREAM Acp76A INTERGENIC
3R	13596418	3R_13596418_SNP [dm3] 3R_17770696_SNP [dm6]	A	C	1.007e^-5	0.342	INTRON CG43102
2L	9312449	2L_9312449_SNP [dm3] 2L_9312449_SNP [dm6]	G	A	1.037e^-5	0.342	INTERGENIC
3R	11815768	3R_11815768_SNP [dm3] 3R_15990046_SNP [dm6]	T	C	1.039e^-5	0.342	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9312434	2L_9312434_SNP [dm3] 2L_9312434_SNP [dm6]	A	G	1.061e^-5	0.343	INTERGENIC
3R	12994827	3R_12994827_SNP [dm3] 3R_17169105_SNP [dm6]	G	A	1.110e^-5	0.353	INTRON Mur89F
2R	16227739	2R_16227739_SNP [dm3] 2R_20340234_SNP [dm6]	A	G	1.196e^-5	0.374	INTERGENIC
3R	13003334	3R_13003334_SNP [dm3] 3R_17177612_SNP [dm6]	T	A	1.221e^-5	0.375	INTRON Mur89F
3R	13002919	3R_13002919_SNP [dm3] 3R_17177197_SNP [dm6]	T	G	1.238e^-5	0.375	INTRON Mur89F
X	6297423	X_6297423_SNP [dm3] X_6403390_SNP [dm6]	T	A	1.270e^-5	0.378	INTERGENIC
3R	13002419	3R_13002419_SNP [dm3] 3R_17176697_SNP [dm6]	C	G	1.366e^-5	0.395	INTRON Mur89F
3R	23768127	3R_23768127_SNP [dm3] 3R_27942405_SNP [dm6]	G	A	1.391e^-5	0.395	DOWNSTREAM mfrn INTRON CG5514
3R	25187133	3R_25187133_SNP [dm3] 3R_29361411_SNP [dm6]	A	G	1.393e^-5	0.395	INTERGENIC
2R	19184109	2R_19184109_SNP [dm3] 2R_23296586_SNP [dm6]	G	A	1.443e^-5	0.395	INTERGENIC
X	17319643	X_17319643_SNP [dm3] X_17425610_SNP [dm6]	T	C	1.468e^-5	0.395	UPSTREAM CG5613 INTRON CG12994 & 1 other
3L	19043620	3L_19043620_SNP [dm3] 3L_19050520_SNP [dm6]	A	G	1.517e^-5	0.395	DOWNSTREAM Acp76A INTERGENIC
3R	8083723	3R_8083723_SNP [dm3] 3R_12258001_SNP [dm6]	C	T	1.539e^-5	0.395	UPSTREAM svp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	4573949	2R_4573949_SNP [dm3] 2R_8686444_SNP [dm6]	T	A	1.561e^-5	0.395	INTERGENIC
2R	18013569	2R_18013569_SNP [dm3] 2R_22126064_SNP [dm6]	C	T	1.586e^-5	0.395	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
3L	11451442	3L_11451442_SNP [dm3] 3L_11458342_SNP [dm6]	T	C	1.651e^-5	0.395	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3L	16277225	3L_16277225_SNP [dm3] 3L_16284125_SNP [dm6]	C	A	1.676e^-5	0.395	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3L	18846991	3L_18846991_SNP [dm3] 3L_18853891_SNP [dm6]	G	A	1.677e^-5	0.395	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21296405	3R_21296405_SNP [dm3] 3R_25470683_SNP [dm6]	C	T	1.726e^-5	0.395	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
3R	10312908	3R_10312908_SNP [dm3] 3R_14487186_SNP [dm6]	C	T	1.739e^-5	0.395	INTERGENIC
3L	19043525	3L_19043525_SNP [dm3] 3L_19050425_SNP [dm6]	A	T	1.743e^-5	0.395	DOWNSTREAM Acp76A INTERGENIC
3R	11808750	3R_11808750_SNP [dm3] 3R_15983028_SNP [dm6]	A	G	1.743e^-5	0.395	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
3R	7551153	3R_7551153_SNP [dm3] 3R_11725431_SNP [dm6]	T	G	1.790e^-5	0.395	INTRON CG12594	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6904346	2L_6904346_SNP [dm3] 2L_6904346_SNP [dm6]	A	C	1.792e^-5	0.395	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7290354	2L_7290354_SNP [dm3] 2L_7290354_SNP [dm6]	T	C	1.792e^-5	0.395	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11823387	X_11823387_SNP [dm3] X_11929354_SNP [dm6]	T	C	1.812e^-5	0.395	SYNONYMOUS_CODING CG10362
3L	9680067	3L_9680067_SNP [dm3] 3L_9686967_SNP [dm6]	A	G	1.823e^-5	0.395	DOWNSTREAM CG16719 INTRON CG6767
3R	19054662	3R_19054662_SNP [dm3] 3R_23228940_SNP [dm6]	T	C	1.831e^-5	0.395	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27272252	3R_27272252_SNP [dm3] 3R_31446530_SNP [dm6]	C	T	1.835e^-5	0.395	INTRON Gprk2
3R	13003355	3R_13003355_SNP [dm3] 3R_17177633_SNP [dm6]	G	C	1.881e^-5	0.395	INTRON Mur89F
3L	19043547	3L_19043547_DEL [dm3] 3L_19050447_DEL [dm6]	AA	T	1.891e^-5	0.395	DOWNSTREAM Acp76A INTERGENIC
3L	16271712	3L_16271712_SNP [dm3] 3L_16278612_SNP [dm6]	C	T	1.901e^-5	0.395	UTR_3_PRIME CG13050 DOWNSTREAM CG13065
3R	25365316	3R_25365316_SNP [dm3] 3R_29539594_SNP [dm6]	G	C	1.915e^-5	0.395	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20410073	3R_20410073_SNP [dm3] 3R_24584351_SNP [dm6]	G	T	1.916e^-5	0.395	SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6243520	2L_6243520_DEL [dm3] 2L_6243520_DEL [dm6]	AA	T	1.972e^-5	0.401	INTERGENIC
3L	19043531	3L_19043531_DEL [dm3] 3L_19050431_DEL [dm6]	ACCA	A	1.990e^-5	0.401	DOWNSTREAM Acp76A INTERGENIC
3R	13810624	3R_13810624_SNP [dm3] 3R_17984902_SNP [dm6]	A	G	2.082e^-5	0.403	INTRON cpo
3L	10751035	3L_10751035_SNP [dm3] 3L_10757935_SNP [dm6]	A	G	2.085e^-5	0.403	INTERGENIC
3R	19500472	3R_19500472_INS [dm3] 3R_23674750_INS [dm6]	C	CAATGC	2.088e^-5	0.403	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10347864	3R_10347864_SNP [dm3] 3R_14522142_SNP [dm6]	A	T	2.098e^-5	0.403	INTRON Pde6 & 1 other
3R	13002769	3R_13002769_SNP [dm3] 3R_17177047_SNP [dm6]	C	G	2.104e^-5	0.403	INTRON Mur89F
3R	12997115	3R_12997115_SNP [dm3] 3R_17171393_SNP [dm6]	A	T	2.159e^-5	0.406	INTRON Mur89F
3L	19043538	3L_19043538_SNP [dm3] 3L_19050438_SNP [dm6]	C	T	2.207e^-5	0.406	DOWNSTREAM Acp76A INTERGENIC
3R	6158409	3R_6158409_SNP [dm3] 3R_10332687_SNP [dm6]	G	A	2.260e^-5	0.406	UTR_3_PRIME CG12818 UPSTREAM sle	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12997348	3R_12997348_SNP [dm3] 3R_17171626_SNP [dm6]	T	A	2.261e^-5	0.406	INTRON Mur89F
2L	3915988	2L_3915988_SNP [dm3] 2L_3915988_SNP [dm6]	C	T	2.268e^-5	0.406	INTRON fred
3R	12980470	3R_12980470_SNP [dm3] 3R_17154748_SNP [dm6]	G	A	2.273e^-5	0.406	SYNONYMOUS_CODING Mur89F DOWNSTREAM CG5292	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12992788	3R_12992788_SNP [dm3] 3R_17167066_SNP [dm6]	C	A	2.276e^-5	0.406	INTRON Mur89F
3R	19500420	3R_19500420_SNP [dm3] 3R_23674698_SNP [dm6]	A	G	2.409e^-5	0.426	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16280966	3L_16280966_SNP [dm3] 3L_16287866_SNP [dm6]	G	T	2.532e^-5	0.43	NON_SYNONYMOUS_CODING CG13046
3R	12995116	3R_12995116_SNP [dm3] 3R_17169394_SNP [dm6]	C	T	2.541e^-5	0.43	INTRON Mur89F
3R	12992911	3R_12992911_SNP [dm3] 3R_17167189_SNP [dm6]	T	A	2.541e^-5	0.43	INTRON Mur89F
3L	7405936	3L_7405936_SNP [dm3] 3L_7412836_SNP [dm6]	C	T	2.543e^-5	0.43	INTERGENIC
3L	19043550	3L_19043550_SNP [dm3] 3L_19050450_SNP [dm6]	G	A	2.567e^-5	0.43	DOWNSTREAM Acp76A INTERGENIC
3L	19043630	3L_19043630_SNP [dm3] 3L_19050530_SNP [dm6]	T	A	2.588e^-5	0.43	DOWNSTREAM Acp76A INTERGENIC
3L	19043509	3L_19043509_SNP [dm3] 3L_19050409_SNP [dm6]	G	A	2.611e^-5	0.43	DOWNSTREAM Acp76A INTERGENIC
2L	14278784	2L_14278784_SNP [dm3] 2L_14278784_SNP [dm6]	C	T	2.613e^-5	0.43	DOWNSTREAM CG32971 INTRON wb
2R	10570073	2R_10570073_SNP [dm3] 2R_14682568_SNP [dm6]	A	T	2.658e^-5	0.431	INTRON mspo
3R	24361568	3R_24361568_SNP [dm3] 3R_28535846_SNP [dm6]	C	G	2.690e^-5	0.431	INTRON Ppn
X	17051209	X_17051209_SNP [dm3] X_17157176_SNP [dm6]	G	A	2.705e^-5	0.431	NON_SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
3R	16431274	3R_16431274_INS [dm3] 3R_20605552_INS [dm6]	C	CGCC	2.712e^-5	0.431	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
2L	9310783	2L_9310783_SNP [dm3] 2L_9310783_SNP [dm6]	A	G	2.751e^-5	0.434	INTERGENIC
3L	18140975	3L_18140975_SNP [dm3] 3L_18147875_SNP [dm6]	C	T	2.779e^-5	0.434	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17756707	3R_17756707_SNP [dm3] 3R_21930985_SNP [dm6]	A	G	2.819e^-5	0.437	INTERGENIC
3L	1903410	3L_1903410_SNP [dm3] 3L_1903410_SNP [dm6]	T	A	2.853e^-5	0.437	INTRON CG1887
2R	8897904	2R_8897904_SNP [dm3] 2R_13010399_SNP [dm6]	T	G	2.865e^-5	0.437	INTERGENIC
3R	12999374	3R_12999374_SNP [dm3] 3R_17173652_SNP [dm6]	G	A	2.911e^-5	0.44	INTRON Mur89F
3R	19500427	3R_19500427_SNP [dm3] 3R_23674705_SNP [dm6]	G	A	3.010e^-5	0.443	INTERGENIC	TF binding site mE1_TFBS_inv
X	17319636	X_17319636_SNP [dm3] X_17425603_SNP [dm6]	C	T	3.028e^-5	0.443	UPSTREAM CG5613 INTRON CG12994 & 1 other
X	17051045	X_17051045_SNP [dm3] X_17157012_SNP [dm6]	C	T	3.052e^-5	0.443	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
3R	11577574	3R_11577574_SNP [dm3] 3R_15751852_SNP [dm6]	A	G	3.059e^-5	0.443	INTERGENIC
2L	15628244	2L_15628244_SNP [dm3] 2L_15628244_SNP [dm6]	C	A	3.077e^-5	0.443	UPSTREAM CG7631 INTERGENIC
3L	19043504	3L_19043504_INS [dm3] 3L_19050404_INS [dm6]	A	ATTATAACTTGA...	3.080e^-5	0.443	DOWNSTREAM Acp76A INTERGENIC
3L	11920416	3L_11920416_SNP [dm3] 3L_11927316_SNP [dm6]	C	T	3.097e^-5	0.443	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19501079	3R_19501079_SNP [dm3] 3R_23675357_SNP [dm6]	A	T	3.166e^-5	0.45	INTERGENIC
3L	19043528	3L_19043528_SNP [dm3] 3L_19050428_SNP [dm6]	T	G	3.219e^-5	0.453	DOWNSTREAM Acp76A INTERGENIC
2L	9158808	2L_9158808_SNP [dm3] 2L_9158808_SNP [dm6]	A	G	3.238e^-5	0.453	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	26278272	3R_26278272_SNP [dm3] 3R_30452550_SNP [dm6]	T	C	3.280e^-5	0.454	INTRON aralar1
3L	1903380	3L_1903380_INS [dm3] 3L_1903380_INS [dm6]	A	AA	3.292e^-5	0.454	INTRON CG1887
2L	567798	2L_567798_SNP [dm3] 2L_567798_SNP [dm6]	G	C	3.317e^-5	0.454	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9310501	2L_9310501_SNP [dm3] 2L_9310501_SNP [dm6]	T	A	3.366e^-5	0.456	INTERGENIC
3R	13015007	3R_13015007_SNP [dm3] 3R_17189285_SNP [dm6]	C	T	3.385e^-5	0.456	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1903366	3L_1903366_SNP [dm3] 3L_1903366_SNP [dm6]	A	G	3.456e^-5	0.456	INTRON CG1887
3L	11342042	3L_11342042_SNP [dm3] 3L_11348942_SNP [dm6]	T	A	3.507e^-5	0.456	DOWNSTREAM CR45251 INTERGENIC
3L	13911262	3L_13911262_SNP [dm3] 3L_13918162_SNP [dm6]	A	C	3.540e^-5	0.456	INTRON Rgl
3R	12978634	3R_12978634_SNP [dm3] 3R_17152912_SNP [dm6]	A	G	3.540e^-5	0.456	UTR_3_PRIME CG5292 DOWNSTREAM Mur89F
3R	13195209	3R_13195209_SNP [dm3] 3R_17369487_SNP [dm6]	C	T	3.541e^-5	0.456	INTERGENIC
X	6297429	X_6297429_SNP [dm3] X_6403396_SNP [dm6]	T	A	3.541e^-5	0.456	INTERGENIC
3L	16278213	3L_16278213_SNP [dm3] 3L_16285113_SNP [dm6]	G	A	3.551e^-5	0.456	SYNONYMOUS_CODING CG13047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14278811	2L_14278811_SNP [dm3] 2L_14278811_SNP [dm6]	G	T	3.583e^-5	0.457	DOWNSTREAM CG32971 INTRON wb
X	19922514	X_19922514_SNP [dm3] X_20028481_SNP [dm6]	T	C	3.636e^-5	0.458	SYNONYMOUS_CODING Dop2R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13025477	3R_13025477_SNP [dm3] 3R_17199755_SNP [dm6]	T	G	3.644e^-5	0.458	INTRON Mur89F
3R	19500428	3R_19500428_SNP [dm3] 3R_23674706_SNP [dm6]	T	A	3.687e^-5	0.458	INTERGENIC	TF binding site mE1_TFBS_inv
3L	19043616	3L_19043616_SNP [dm3] 3L_19050516_SNP [dm6]	G	A	3.707e^-5	0.458	DOWNSTREAM Acp76A INTERGENIC
3L	16272161	3L_16272161_SNP [dm3] 3L_16279061_SNP [dm6]	G	A	3.712e^-5	0.458	NON_SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
3L	7837720	3L_7837720_SNP [dm3] 3L_7844620_SNP [dm6]	C	A	3.751e^-5	0.46	INTRON Pdp1	regulatory region REDfly_CRMs
2R	17292740	2R_17292740_SNP [dm3] 2R_21405235_SNP [dm6]	A	G	3.804e^-5	0.463	INTRON Sdc
2L	3915958	2L_3915958_SNP [dm3] 2L_3915958_SNP [dm6]	T	C	3.842e^-5	0.465	INTRON fred
2R	14728979	2R_14728979_SNP [dm3] 2R_18841474_SNP [dm6]	C	T	3.881e^-5	0.467	NON_SYNONYMOUS_CODING CG15099
3L	7082450	3L_7082450_SNP [dm3] 3L_7089350_SNP [dm6]	C	A	3.906e^-5	0.467	UPSTREAM Cpr65Eb INTERGENIC
3L	1216667	3L_1216667_SNP [dm3] 3L_1216667_SNP [dm6]	T	A	3.976e^-5	0.47	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	16272476	3L_16272476_SNP [dm3] 3L_16279376_SNP [dm6]	C	T	3.986e^-5	0.47	UPSTREAM CG13050 INTERGENIC
3L	5245277	3L_5245277_SNP [dm3] 3L_5252177_SNP [dm6]	G	A	4.085e^-5	0.471	INTRON shep
2L	4097462	2L_4097462_SNP [dm3] 2L_4097462_SNP [dm6]	T	C	4.174e^-5	0.471	INTRON ed
X	9851652	X_9851652_INS [dm3] X_9957619_INS [dm6]	A	AA	4.222e^-5	0.471	INTERGENIC
3R	12988352	3R_12988352_SNP [dm3] 3R_17162630_SNP [dm6]	A	T	4.234e^-5	0.471	INTRON Mur89F
3R	18966011	3R_18966011_SNP [dm3] 3R_23140289_SNP [dm6]	C	T	4.272e^-5	0.471	INTRON hh	TF binding site mE1_TFBS_cad
2L	6904352	2L_6904352_SNP [dm3] 2L_6904352_SNP [dm6]	C	T	4.273e^-5	0.471	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21238025	3R_21238025_SNP [dm3] 3R_25412303_SNP [dm6]	C	T	4.365e^-5	0.471	INTRON Fur1
3L	11919985	3L_11919985_SNP [dm3] 3L_11926885_SNP [dm6]	A	T	4.391e^-5	0.471	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4431419	2L_4431419_SNP [dm3] 2L_4431419_SNP [dm6]	T	A	4.403e^-5	0.471	INTRON CG15431
3R	13385954	3R_13385954_SNP [dm3] 3R_17560232_SNP [dm6]	T	C	4.410e^-5	0.471	INTRON Hmx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17984130	2R_17984130_SNP [dm3] 2R_22096625_SNP [dm6]	C	T	4.436e^-5	0.471	INTRON CG11073
2L	9313394	2L_9313394_SNP [dm3] 2L_9313394_SNP [dm6]	G	A	4.442e^-5	0.471	INTERGENIC
3L	1903374	3L_1903374_SNP [dm3] 3L_1903374_SNP [dm6]	T	A	4.522e^-5	0.471	INTRON CG1887
3R	23723022	3R_23723022_SNP [dm3] 3R_27897300_SNP [dm6]	C	T	4.536e^-5	0.471	INTRON CG34353
2L	6519951	2L_6519951_SNP [dm3] 2L_6519951_SNP [dm6]	A	T	4.536e^-5	0.471	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25190679	3R_25190679_SNP [dm3] 3R_29364957_SNP [dm6]	A	C	4.543e^-5	0.471	INTERGENIC
3R	26278273	3R_26278273_SNP [dm3] 3R_30452551_SNP [dm6]	T	C	4.571e^-5	0.471	INTRON aralar1
3L	5138737	3L_5138737_SNP [dm3] 3L_5145637_SNP [dm6]	G	T	4.576e^-5	0.471	SYNONYMOUS_CODING CG10671 UPSTREAM Aats-ala-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17286540	2R_17286540_SNP [dm3] 2R_21399035_SNP [dm6]	G	A	4.582e^-5	0.471	SYNONYMOUS_CODING Sdc INTRON Sdc
3R	11808735	3R_11808735_SNP [dm3] 3R_15983013_SNP [dm6]	T	A	4.600e^-5	0.471	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
X	6297404	X_6297404_SNP [dm3] X_6403371_SNP [dm6]	A	T	4.632e^-5	0.471	INTERGENIC
X	6297417	X_6297417_SNP [dm3] X_6403384_SNP [dm6]	C	T	4.632e^-5	0.471	INTERGENIC
3R	14785685	3R_14785685_DEL [dm3] 3R_18959963_DEL [dm6]	CTCTGAATATC...	C	4.642e^-5	0.471	INTRON CG42613 & 1 other
3R	11803217	3R_11803217_SNP [dm3] 3R_15977495_SNP [dm6]	G	A	4.649e^-5	0.471	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
2L	3472717	2L_3472717_SNP [dm3] 2L_3472717_SNP [dm6]	C	T	4.656e^-5	0.471	START_GAINED pgant4 UTR_5_PRIME pgant4 UPSTREAM pgant4 DOWNSTREAM CG31776	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12051710	3L_12051710_SNP [dm3] 3L_12058610_SNP [dm6]	C	A	4.656e^-5	0.471	INTRON rols
X	15779237	X_15779237_INS [dm3] X_15885204_INS [dm6]	C	CTCCTCCTCCTCC...	4.667e^-5	0.471	CODON_INSERTION tay	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	26277727	3R_26277727_SNP [dm3] 3R_30452005_SNP [dm6]	A	T	4.770e^-5	0.478	INTRON aralar1
3R	13002266	3R_13002266_SNP [dm3] 3R_17176544_SNP [dm6]	C	T	4.814e^-5	0.479	INTRON Mur89F
3R	9735037	3R_9735037_SNP [dm3] 3R_13909315_SNP [dm6]	C	T	4.845e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12997072	3R_12997072_SNP [dm3] 3R_17171350_SNP [dm6]	A	T	4.867e^-5	0.479	INTRON Mur89F
3L	10728342	3L_10728342_INS [dm3] 3L_10735242_INS [dm6]	T	TTAT	4.899e^-5	0.479	INTERGENIC
X	11823378	X_11823378_SNP [dm3] X_11929345_SNP [dm6]	G	T	4.923e^-5	0.479	SYNONYMOUS_CODING CG10362
2L	9300645	2L_9300645_SNP [dm3] 2L_9300645_SNP [dm6]	G	A	4.982e^-5	0.479	UTR_3_PRIME Ggamma30A
3L	7837702	3L_7837702_SNP [dm3] 3L_7844602_SNP [dm6]	C	G	4.989e^-5	0.479	INTRON Pdp1	regulatory region REDfly_CRMs
3L	11919968	3L_11919968_INS [dm3] 3L_11926868_INS [dm6]	C	CT	5.021e^-5	0.479	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8083342	3R_8083342_SNP [dm3] 3R_12257620_SNP [dm6]	G	C	5.032e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13015006	3R_13015006_SNP [dm3] 3R_17189284_SNP [dm6]	C	T	5.032e^-5	0.479	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6297419	X_6297419_SNP [dm3] X_6403386_SNP [dm6]	T	A	5.065e^-5	0.479	INTERGENIC
2L	9313950	2L_9313950_SNP [dm3] 2L_9313950_SNP [dm6]	G	A	5.085e^-5	0.479	INTERGENIC
3R	13017829	3R_13017829_SNP [dm3] 3R_17192107_SNP [dm6]	A	C	5.138e^-5	0.48	INTRON Mur89F
2L	7160723	2L_7160723_SNP [dm3] 2L_7160723_SNP [dm6]	C	A	5.147e^-5	0.48	INTERGENIC
3R	13562766	3R_13562766_SNP [dm3] 3R_17737044_SNP [dm6]	A	G	5.209e^-5	0.484	UTR_5_PRIME TyrRII
2L	3910816	2L_3910816_SNP [dm3] 2L_3910816_SNP [dm6]	C	T	5.300e^-5	0.485	DOWNSTREAM CG31773 INTRON fred
3L	11334473	3L_11334473_SNP [dm3] 3L_11341373_SNP [dm6]	G	C	5.313e^-5	0.485	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10997517	3L_10997517_SNP [dm3] 3L_11004417_SNP [dm6]	C	T	5.321e^-5	0.485	INTRON klu
3R	23811181	3R_23811181_SNP [dm3] 3R_27985459_SNP [dm6]	A	C	5.330e^-5	0.485	INTRON betaTub97EF
X	10458800	X_10458800_SNP [dm3] X_10564767_SNP [dm6]	T	C	5.412e^-5	0.49	INTRON spri
3R	26179052	3R_26179052_SNP [dm3] 3R_30353330_SNP [dm6]	T	A	5.498e^-5	0.491	INTRON hdc
2L	3384790	2L_3384790_SNP [dm3] 2L_3384790_SNP [dm6]	C	A	5.531e^-5	0.491	INTERGENIC
3R	16891371	3R_16891371_SNP [dm3] 3R_21065649_SNP [dm6]	G	T	5.533e^-5	0.491	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	20082334	3L_20082334_SNP [dm3] 3L_20089234_SNP [dm6]	T	C	5.536e^-5	0.491	UPSTREAM sNPF-R INTERGENIC
2L	15020652	2L_15020652_SNP [dm3] 2L_15020652_SNP [dm6]	A	T	5.571e^-5	0.491	INTRON GABA-B-R1
3R	11786983	3R_11786983_SNP [dm3] 3R_15961261_SNP [dm6]	C	T	5.592e^-5	0.491	UTR_3_PRIME Sap47 DOWNSTREAM Sap47 & 1 other
3R	13015100	3R_13015100_SNP [dm3] 3R_17189378_SNP [dm6]	T	C	5.600e^-5	0.491	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4532839	X_4532839_SNP [dm3] X_4638806_SNP [dm6]	C	A	5.666e^-5	0.493	UTR_3_PRIME pon DOWNSTREAM CG3081	TF binding site mE1_TFBS_cad
2R	17321959	2R_17321959_SNP [dm3] 2R_21434454_SNP [dm6]	C	T	5.735e^-5	0.493	INTRON Sdc
3L	7837717	3L_7837717_SNP [dm3] 3L_7844617_SNP [dm6]	A	G	5.746e^-5	0.493	INTRON Pdp1	regulatory region REDfly_CRMs
3L	17500382	3L_17500382_SNP [dm3] 3L_17507282_SNP [dm6]	G	T	5.790e^-5	0.493	INTRON Oatp74D
3R	11806193	3R_11806193_SNP [dm3] 3R_15980471_SNP [dm6]	A	G	5.792e^-5	0.493	SPLICE_SITE_REGION Hel89B SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19142490	3R_19142490_SNP [dm3] 3R_23316768_SNP [dm6]	G	A	5.845e^-5	0.493	INTRON pnt
3L	1469020	3L_1469020_SNP [dm3] 3L_1469020_SNP [dm6]	G	C	5.874e^-5	0.493	DOWNSTREAM rho INTRON Ptp61F
X	2823447	X_2823447_SNP [dm3] X_2929414_SNP [dm6]	G	A	5.910e^-5	0.493	UPSTREAM CG32793 INTRON kirre
X	10283526	X_10283526_SNP [dm3] X_10389493_SNP [dm6]	G	A	5.910e^-5	0.493	INTRON flw
3R	20272888	3R_20272888_SNP [dm3] 3R_24447166_SNP [dm6]	A	C	5.914e^-5	0.493	INTRON nAChRalpha1
3R	25986442	3R_25986442_SNP [dm3] 3R_30160720_SNP [dm6]	A	T	5.944e^-5	0.493	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15588108	X_15588108_SNP [dm3] X_15694075_SNP [dm6]	A	G	5.951e^-5	0.493	UPSTREAM CR45526 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10813001	X_10813001_SNP [dm3] X_10918968_SNP [dm6]	T	G	5.986e^-5	0.493	INTRON CG43901
3R	11815869	3R_11815869_SNP [dm3] 3R_15990147_SNP [dm6]	C	T	6.042e^-5	0.493	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18140963	3L_18140963_SNP [dm3] 3L_18147863_SNP [dm6]	T	A	6.050e^-5	0.493	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24871764	3R_24871764_SNP [dm3] 3R_29046042_SNP [dm6]	C	T	6.050e^-5	0.493	INTRON Pkc98E
X	13002734	X_13002734_SNP [dm3] X_13108701_SNP [dm6]	C	A	6.100e^-5	0.495	UPSTREAM Fer3HCH INTRON CG43313
3R	12992941	3R_12992941_SNP [dm3] 3R_17167219_SNP [dm6]	G	A	6.173e^-5	0.496	INTRON Mur89F
X	17319635	X_17319635_SNP [dm3] X_17425602_SNP [dm6]	G	A	6.179e^-5	0.496	UPSTREAM CG5613 INTRON CG12994 & 1 other
3R	13525010	3R_13525010_SNP [dm3] 3R_17699288_SNP [dm6]	T	C	6.192e^-5	0.496	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
3R	25611372	3R_25611372_SNP [dm3] 3R_29785650_SNP [dm6]	A	G	6.352e^-5	0.503	INTRON kay
3L	19043624	3L_19043624_SNP [dm3] 3L_19050524_SNP [dm6]	A	T	6.357e^-5	0.503	DOWNSTREAM Acp76A INTERGENIC
3R	24991747	3R_24991747_SNP [dm3] 3R_29166025_SNP [dm6]	C	T	6.359e^-5	0.503	INTRON CG11898
3L	16277467	3L_16277467_SNP [dm3] 3L_16284367_SNP [dm6]	G	T	6.444e^-5	0.508	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3R	18945486	3R_18945486_SNP [dm3] 3R_23119764_SNP [dm6]	C	G	6.468e^-5	0.508	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl
2L	12847280	2L_12847280_SNP [dm3] 2L_12847280_SNP [dm6]	T	C	6.539e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21394173	3R_21394173_SNP [dm3] 3R_25568451_SNP [dm6]	A	C	6.673e^-5	0.511	INTRON msi
3R	27248695	3R_27248695_SNP [dm3] 3R_31422973_SNP [dm6]	A	G	6.680e^-5	0.511	INTRON Gprk2
2R	17327145	2R_17327145_INS [dm3] 2R_21439640_INS [dm6]	A	GTTTTTGGGGC...	6.703e^-5	0.511	INTRON Sdc
2L	8478857	2L_8478857_SNP [dm3] 2L_8478857_SNP [dm6]	G	T	6.716e^-5	0.511	UTR_5_PRIME d DOWNSTREAM CheA29a INTRON d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19052484	3L_19052484_SNP [dm3] 3L_19059384_SNP [dm6]	C	T	6.751e^-5	0.511	DOWNSTREAM CG3797 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9611208	2L_9611208_SNP [dm3] 2L_9611208_SNP [dm6]	G	C	6.777e^-5	0.511	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7683099	3R_7683099_SNP [dm3] 3R_11857377_SNP [dm6]	C	A	6.778e^-5	0.511	INTRON CG6959
3L	2628044	3L_2628044_SNP [dm3] 3L_2628044_SNP [dm6]	T	G	6.802e^-5	0.511	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3921314	2L_3921314_SNP [dm3] 2L_3921314_SNP [dm6]	G	T	6.851e^-5	0.511	INTRON fred
3R	25468068	3R_25468068_SNP [dm3] 3R_29642346_SNP [dm6]	C	T	6.885e^-5	0.511	INTRON Dop1R2	TF binding site mE1_TFBS_cad
3L	7405307	3L_7405307_SNP [dm3] 3L_7412207_SNP [dm6]	C	T	6.933e^-5	0.511	INTERGENIC
X	2823462	X_2823462_SNP [dm3] X_2929429_SNP [dm6]	A	G	6.975e^-5	0.511	UPSTREAM CG32793 INTRON kirre
2R	18015290	2R_18015290_SNP [dm3] 2R_22127785_SNP [dm6]	T	C	6.989e^-5	0.511	UPSTREAM NtR & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	10822690	3L_10822690_SNP [dm3] 3L_10829590_SNP [dm6]	A	T	7.049e^-5	0.511	INTERGENIC
3R	9637432	3R_9637432_SNP [dm3] 3R_13811710_SNP [dm6]	A	C	7.055e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2823413	X_2823413_SNP [dm3] X_2929380_SNP [dm6]	A	G	7.063e^-5	0.511	UPSTREAM CG32793 INTRON kirre
3L	11919976	3L_11919976_DEL [dm3] 3L_11926876_DEL [dm6]	TCTC	T	7.087e^-5	0.511	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16361886	2R_16361886_INS [dm3] 2R_20474381_INS [dm6]	G	GATCTCA	7.087e^-5	0.511	INTRON CG12484
3R	27175063	3R_27175063_SNP [dm3] 3R_31349341_SNP [dm6]	T	C	7.122e^-5	0.511	INTRON CG34347	regulatory region REDfly_CRMs
3L	7404140	3L_7404140_SNP [dm3] 3L_7411040_SNP [dm6]	G	A	7.137e^-5	0.511	INTERGENIC
3R	24361575	3R_24361575_SNP [dm3] 3R_28535853_SNP [dm6]	A	G	7.140e^-5	0.511	INTRON Ppn
3L	2651009	3L_2651009_SNP [dm3] 3L_2651009_SNP [dm6]	T	G	7.155e^-5	0.511	DOWNSTREAM CG1246 INTRON Aats-pro	TF binding site mE1_TFBS_hkb
3R	24994432	3R_24994432_SNP [dm3] 3R_29168710_SNP [dm6]	G	A	7.172e^-5	0.511	INTRON CG11898
3L	10727600	3L_10727600_SNP [dm3] 3L_10734500_SNP [dm6]	C	T	7.208e^-5	0.512	INTERGENIC
3L	12012972	3L_12012972_SNP [dm3] 3L_12019872_SNP [dm6]	C	T	7.294e^-5	0.512	INTRON rols
2L	3659799	2L_3659799_SNP [dm3] 2L_3659799_SNP [dm6]	A	T	7.318e^-5	0.512	INTERGENIC
3L	455045	3L_455045_SNP [dm3] 3L_455045_SNP [dm6]	C	T	7.342e^-5	0.512	INTRON klar
3L	7086548	3L_7086548_SNP [dm3] 3L_7093448_SNP [dm6]	T	C	7.356e^-5	0.512	SYNONYMOUS_CODING Cpr65Ec	TF binding site mE1_TFBS_inv
X	3602041	X_3602041_SNP [dm3] X_3708008_SNP [dm6]	C	T	7.359e^-5	0.512	INTRON Rala
X	10283532	X_10283532_SNP [dm3] X_10389499_SNP [dm6]	A	G	7.376e^-5	0.512	INTRON flw
X	7358854	X_7358854_SNP [dm3] X_7464821_SNP [dm6]	C	T	7.446e^-5	0.515	INTERGENIC
3L	16271748	3L_16271748_SNP [dm3] 3L_16278648_SNP [dm6]	G	T	7.485e^-5	0.516	UTR_3_PRIME CG13050 DOWNSTREAM CG13065
2R	7820373	2R_7820373_SNP [dm3] 2R_11932868_SNP [dm6]	A	C	7.540e^-5	0.518	INTERGENIC
2R	17345329	2R_17345329_SNP [dm3] 2R_21457824_SNP [dm6]	G	C	7.597e^-5	0.519	INTRON Sdc
3L	10765849	3L_10765849_SNP [dm3] 3L_10772749_SNP [dm6]	C	A	7.603e^-5	0.519	INTRON CG43245
2R	19710536	2R_19710536_SNP [dm3] 2R_23823013_SNP [dm6]	T	C	7.650e^-5	0.519	DOWNSTREAM CG4763 INTRON CG5549
3L	10729093	3L_10729093_SNP [dm3] 3L_10735993_SNP [dm6]	C	T	7.684e^-5	0.519	INTERGENIC
3L	11919970	3L_11919970_SNP [dm3] 3L_11926870_SNP [dm6]	T	G	7.690e^-5	0.519	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12994841	3R_12994841_SNP [dm3] 3R_17169119_SNP [dm6]	C	T	7.749e^-5	0.519	INTRON Mur89F
2L	15255180	2L_15255180_SNP [dm3] 2L_15255180_SNP [dm6]	T	A	7.763e^-5	0.519	NON_SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13002720	3R_13002720_SNP [dm3] 3R_17176998_SNP [dm6]	G	A	7.806e^-5	0.519	INTRON Mur89F
2L	567795	2L_567795_SNP [dm3] 2L_567795_SNP [dm6]	T	C	7.821e^-5	0.519	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	19142570	3R_19142570_INS [dm3] 3R_23316848_INS [dm6]	T	TCTT	7.825e^-5	0.519	INTRON pnt
3R	1696387	3R_1696387_SNP [dm3] 3R_5870665_SNP [dm6]	A	T	7.898e^-5	0.521	INTRON CG34113
2R	14439839	2R_14439839_SNP [dm3] 2R_18552334_SNP [dm6]	T	C	7.919e^-5	0.521	INTERGENIC
2L	6907209	2L_6907209_DEL [dm3] 2L_6907209_DEL [dm6]	TTTTTA	T	7.961e^-5	0.521	UPSTREAM Rat1 DOWNSTREAM Nlg2 INTRON CG13773
2L	567801	2L_567801_SNP [dm3] 2L_567801_SNP [dm6]	G	A	8.003e^-5	0.521	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16270103	3L_16270103_SNP [dm3] 3L_16277003_SNP [dm6]	C	A	8.007e^-5	0.521	UPSTREAM CG13065 INTERGENIC
3R	10299286	3R_10299286_SNP [dm3] 3R_14473564_SNP [dm6]	A	G	8.119e^-5	0.526	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9317950	2L_9317950_SNP [dm3] 2L_9317950_SNP [dm6]	G	C	8.155e^-5	0.526	INTERGENIC
2L	9310503	2L_9310503_SNP [dm3] 2L_9310503_SNP [dm6]	T	A	8.164e^-5	0.526	INTERGENIC
3L	13680936	3L_13680936_SNP [dm3] 3L_13687836_SNP [dm6]	C	T	8.283e^-5	0.532	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	21427687	3R_21427687_SNP [dm3] 3R_25601965_SNP [dm6]	G	A	8.315e^-5	0.532	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2R	17322773	2R_17322773_DEL [dm3] 2R_21435268_DEL [dm6]	TC	T	8.410e^-5	0.532	INTRON Sdc
2L	9322314	2L_9322314_SNP [dm3] 2L_9322314_SNP [dm6]	C	T	8.415e^-5	0.532	INTERGENIC
3R	9653593	3R_9653593_SNP [dm3] 3R_13827871_SNP [dm6]	T	G	8.441e^-5	0.532	UTR_5_PRIME Mst87F UPSTREAM CR43300 & 1 other	regulatory region REDfly_CRMs
3R	12976222	3R_12976222_SNP [dm3] 3R_17150500_SNP [dm6]	C	G	8.442e^-5	0.532	UPSTREAM CG5285 DOWNSTREAM Det INTERGENIC	TF binding site mE1_TFBS_ttk
2L	9130346	2L_9130346_SNP [dm3] 2L_9130346_SNP [dm6]	C	T	8.492e^-5	0.532	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3R	9726940	3R_9726940_SNP [dm3] 3R_13901218_SNP [dm6]	T	A	8.493e^-5	0.532	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25467717	3R_25467717_SNP [dm3] 3R_29641995_SNP [dm6]	C	T	8.554e^-5	0.532	NON_SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11232028	3R_11232028_SNP [dm3] 3R_15406306_SNP [dm6]	G	T	8.557e^-5	0.532	UPSTREAM CG6125 INTRON CG6125
2L	6249626	2L_6249626_SNP [dm3] 2L_6249626_SNP [dm6]	C	A	8.561e^-5	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18269927	2R_18269927_SNP [dm3] 2R_22382422_SNP [dm6]	T	C	8.625e^-5	0.534	UTR_3_PRIME wrapper UPSTREAM CG13506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5366948	X_5366948_SNP [dm3] X_5472915_SNP [dm6]	A	T	8.677e^-5	0.534	INTRON SPR
2L	15840225	2L_15840225_SNP [dm3] 2L_15840225_SNP [dm6]	C	T	8.700e^-5	0.534	DOWNSTREAM CR45694 INTERGENIC
2L	9130347	2L_9130347_SNP [dm3] 2L_9130347_SNP [dm6]	G	A	8.706e^-5	0.534	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3L	20082356	3L_20082356_SNP [dm3] 3L_20089256_SNP [dm6]	C	T	8.749e^-5	0.534	UPSTREAM sNPF-R INTERGENIC
X	12378561	X_12378561_DEL [dm3] X_12484528_DEL [dm6]	AA	A	8.792e^-5	0.534	INTERGENIC
3L	16273044	3L_16273044_SNP [dm3] 3L_16279944_SNP [dm6]	T	C	8.821e^-5	0.534	UPSTREAM CG13050 & 1 other INTERGENIC
3L	16271958	3L_16271958_SNP [dm3] 3L_16278858_SNP [dm6]	C	T	8.854e^-5	0.534	NON_SYNONYMOUS_CODING CG13050 DOWNSTREAM CG13065
3R	24060286	3R_24060286_SNP [dm3] 3R_28234564_SNP [dm6]	C	G	8.896e^-5	0.534	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6332885	X_6332885_SNP [dm3] X_6438852_SNP [dm6]	C	T	8.899e^-5	0.534	INTRON CG42340
3L	18140902	3L_18140902_SNP [dm3] 3L_18147802_SNP [dm6]	C	T	8.908e^-5	0.534	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25468182	3R_25468182_SNP [dm3] 3R_29642460_SNP [dm6]	T	C	9.072e^-5	0.537	INTRON Dop1R2	TF binding site mE1_TFBS_cad
3R	23671015	3R_23671015_SNP [dm3] 3R_27845293_SNP [dm6]	A	T	9.080e^-5	0.537	UPSTREAM Or98a INTRON CG34353 & 1 other
3R	5012290	3R_5012290_SNP [dm3] 3R_9186568_SNP [dm6]	T	C	9.083e^-5	0.537	INTRON pum
3L	17278394	3L_17278394_SNP [dm3] 3L_17285294_SNP [dm6]	C	T	9.135e^-5	0.537	INTERGENIC
3R	12994568	3R_12994568_SNP [dm3] 3R_17168846_SNP [dm6]	C	G	9.242e^-5	0.537	INTRON Mur89F
X	6297347	X_6297347_SNP [dm3] X_6403314_SNP [dm6]	T	A	9.244e^-5	0.537	INTERGENIC
3R	9710989	3R_9710989_SNP [dm3] 3R_13885267_SNP [dm6]	A	G	9.276e^-5	0.537	INTERGENIC
3L	18262441	3L_18262441_SNP [dm3] 3L_18269341_SNP [dm6]	C	A	9.317e^-5	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9311397	2L_9311397_SNP [dm3] 2L_9311397_SNP [dm6]	C	T	9.323e^-5	0.537	INTERGENIC
3L	16273352	3L_16273352_SNP [dm3] 3L_16280252_SNP [dm6]	C	A	9.328e^-5	0.537	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
2R	13489718	2R_13489718_SNP [dm3] 2R_17602213_SNP [dm6]	T	A	9.375e^-5	0.537	SYNONYMOUS_CODING lack	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3913451	2L_3913451_SNP [dm3] 2L_3913451_SNP [dm6]	C	T	9.400e^-5	0.537	NON_SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site mE1_TFBS_inv
3R	10367061	3R_10367061_SNP [dm3] 3R_14541339_SNP [dm6]	G	T	9.420e^-5	0.537	INTRON Pde6
2R	17326132	2R_17326132_SNP [dm3] 2R_21438627_SNP [dm6]	G	A	9.472e^-5	0.537	INTRON Sdc
2R	17347890	2R_17347890_SNP [dm3] 2R_21460385_SNP [dm6]	G	C	9.482e^-5	0.537	INTRON Sdc
3R	9707681	3R_9707681_SNP [dm3] 3R_13881959_SNP [dm6]	G	A	9.492e^-5	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18241684	2R_18241684_SNP [dm3] 2R_22354179_SNP [dm6]	G	A	9.495e^-5	0.537	INTRON Liprin-gamma
3L	1352732	3L_1352732_SNP [dm3] 3L_1352732_SNP [dm6]	T	C	9.496e^-5	0.537	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	9731135	2L_9731135_SNP [dm3] 2L_9731135_SNP [dm6]	A	T	9.505e^-5	0.537	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	6297414	X_6297414_SNP [dm3] X_6403381_SNP [dm6]	T	C	9.544e^-5	0.538	INTERGENIC
2L	8169697	2L_8169697_SNP [dm3] 2L_8169697_SNP [dm6]	C	T	9.631e^-5	0.539	INTRON Piezo
2L	8478856	2L_8478856_SNP [dm3] 2L_8478856_SNP [dm6]	A	G	9.666e^-5	0.539	UTR_5_PRIME d DOWNSTREAM CheA29a INTRON d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22155216	X_22155216_SNP [dm3] X_22753380_SNP [dm6]	T	G	9.725e^-5	0.539	INTRON CR44997	transposable element FlyBase
X	5700434	X_5700434_SNP [dm3] X_5806401_SNP [dm6]	G	T	9.748e^-5	0.539	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8568385	2L_8568385_SNP [dm3] 2L_8568385_SNP [dm6]	C	A	9.768e^-5	0.539	INTRON Sema-1a
2L	8568387	2L_8568387_SNP [dm3] 2L_8568387_SNP [dm6]	G	C	9.768e^-5	0.539	INTRON Sema-1a
3R	26978005	3R_26978005_SNP [dm3] 3R_31152283_SNP [dm6]	A	C	9.770e^-5	0.539	INTRON Gycbeta100B
3R	10337561	3R_10337561_INS [dm3] 3R_14511839_INS [dm6]	T	TTGC	9.847e^-5	0.539	UTR_5_PRIME mRpL11 UPSTREAM HtrA2 DOWNSTREAM CG8461	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10136632	2L_10136632_SNP [dm3] 2L_10136632_SNP [dm6]	T	C	9.861e^-5	0.539	INTRON CG44153	TF binding site mE1_TFBS_cad
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	9.868e^-5	0.539	INTERGENIC
3R	6158542	3R_6158542_INS [dm3] 3R_10332820_INS [dm6]	T	TTA	9.889e^-5	0.539	UPSTREAM sle DOWNSTREAM CG12818 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	8548539	3L_8548539_SNP [dm3] 3L_8555439_SNP [dm6]	T	A	1.003e^-4	0.544	INTRON rhea
3R	13000203	3R_13000203_SNP [dm3] 3R_17174481_SNP [dm6]	A	C	1.007e^-4	0.544	INTRON Mur89F
3L	3706261	3L_3706261_SNP [dm3] 3L_3706261_SNP [dm6]	A	C	1.010e^-4	0.544	INTERGENIC
3L	16277678	3L_16277678_SNP [dm3] 3L_16284578_SNP [dm6]	C	T	1.017e^-4	0.544	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
2L	1939670	2L_1939670_SNP [dm3] 2L_1939670_SNP [dm6]	C	G	1.022e^-4	0.544	SYNONYMOUS_CODING CG7337 INTRON CG7337
3L	16325335	3L_16325335_SNP [dm3] 3L_16332235_SNP [dm6]	A	T	1.022e^-4	0.544	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	455037	3L_455037_SNP [dm3] 3L_455037_SNP [dm6]	G	C	1.023e^-4	0.544	INTRON klar
3R	24871763	3R_24871763_SNP [dm3] 3R_29046041_SNP [dm6]	C	A	1.026e^-4	0.544	INTRON Pkc98E
2R	9608661	2R_9608661_SNP [dm3] 2R_13721156_SNP [dm6]	A	G	1.028e^-4	0.544	INTRON fas
3R	8172953	3R_8172953_SNP [dm3] 3R_12347231_SNP [dm6]	G	T	1.036e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	27300496	3R_27300496_SNP [dm3] 3R_31474774_SNP [dm6]	C	G	1.041e^-4	0.544	INTERGENIC
3R	8079962	3R_8079962_SNP [dm3] 3R_12254240_SNP [dm6]	G	A	1.042e^-4	0.544	UTR_5_PRIME CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	3730453	3L_3730453_SNP [dm3] 3L_3730453_SNP [dm6]	C	A	1.044e^-4	0.544	INTRON CG32264
3R	9777815	3R_9777815_SNP [dm3] 3R_13952093_SNP [dm6]	T	C	1.046e^-4	0.544	UPSTREAM CG9926 INTERGENIC
2L	8860877	2L_8860877_SNP [dm3] 2L_8860877_SNP [dm6]	A	G	1.051e^-4	0.544	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9158939	2L_9158939_DEL [dm3] 2L_9158939_DEL [dm6]	TGGATCT	T	1.051e^-4	0.544	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	13025716	3R_13025716_SNP [dm3] 3R_17199994_SNP [dm6]	T	C	1.052e^-4	0.544	INTRON Mur89F
3L	5245219	3L_5245219_SNP [dm3] 3L_5252119_SNP [dm6]	C	G	1.054e^-4	0.544	INTRON shep
2R	7040079	2R_7040079_INS [dm3] 2R_11152574_INS [dm6]	G	GCG	1.057e^-4	0.544	INTRON CG13229
3L	1278780	3L_1278780_SNP [dm3] 3L_1278780_SNP [dm6]	T	G	1.058e^-4	0.544	INTRON CG32333
3R	25468082	3R_25468082_SNP [dm3] 3R_29642360_SNP [dm6]	T	A	1.063e^-4	0.544	INTRON Dop1R2	TF binding site mE1_TFBS_cad
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	1.064e^-4	0.544	INTRON CR44997
2L	3921269	2L_3921269_SNP [dm3] 2L_3921269_SNP [dm6]	A	G	1.068e^-4	0.544	INTRON fred
3R	6157002	3R_6157002_INS [dm3] 3R_10331280_INS [dm6]	G	GG	1.075e^-4	0.544	UTR_5_PRIME Bruce UPSTREAM CG12818	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	6154444	3R_6154444_SNP [dm3] 3R_10328722_SNP [dm6]	C	T	1.078e^-4	0.544	SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
2L	8568381	2L_8568381_SNP [dm3] 2L_8568381_SNP [dm6]	A	T	1.082e^-4	0.544	INTRON Sema-1a
3R	25190693	3R_25190693_SNP [dm3] 3R_29364971_SNP [dm6]	A	G	1.083e^-4	0.544	INTERGENIC
2L	3645141	2L_3645141_SNP [dm3] 2L_3645141_SNP [dm6]	T	G	1.084e^-4	0.544	INTRON for
3R	26116810	3R_26116810_SNP [dm3] 3R_30291088_SNP [dm6]	T	A	1.086e^-4	0.544	INTRON hdc
3L	7405004	3L_7405004_SNP [dm3] 3L_7411904_SNP [dm6]	A	C	1.089e^-4	0.544	INTERGENIC
3L	18131740	3L_18131740_SNP [dm3] 3L_18138640_SNP [dm6]	C	T	1.090e^-4	0.544	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2835197	3R_2835197_SNP [dm3] 3R_7009475_SNP [dm6]	A	G	1.091e^-4	0.544	INTERGENIC
3L	2397470	3L_2397470_SNP [dm3] 3L_2397470_SNP [dm6]	T	A	1.099e^-4	0.545	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	2669374	2L_2669374_SNP [dm3] 2L_2669374_SNP [dm6]	C	T	1.101e^-4	0.545	UPSTREAM Gr23a INTERGENIC
2L	16490819	2L_16490819_SNP [dm3] 2L_16490819_SNP [dm6]	T	G	1.101e^-4	0.545	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	13002363	3R_13002363_SNP [dm3] 3R_17176641_SNP [dm6]	G	A	1.113e^-4	0.549	INTRON Mur89F
3L	17132013	3L_17132013_SNP [dm3] 3L_17138913_SNP [dm6]	G	T	1.120e^-4	0.551	INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12985882	3R_12985882_SNP [dm3] 3R_17160160_SNP [dm6]	A	G	1.125e^-4	0.553	INTRON Mur89F
X	6297437	X_6297437_SNP [dm3] X_6403404_SNP [dm6]	A	C	1.133e^-4	0.555	INTERGENIC
3R	12980143	3R_12980143_SNP [dm3] 3R_17154421_SNP [dm6]	G	T	1.139e^-4	0.555	SYNONYMOUS_CODING Mur89F DOWNSTREAM CG5292	TF binding site mE1_TFBS_cad
3R	11232031	3R_11232031_SNP [dm3] 3R_15406309_SNP [dm6]	C	T	1.144e^-4	0.555	UPSTREAM CG6125 INTRON CG6125
3R	5918968	3R_5918968_SNP [dm3] 3R_10093246_SNP [dm6]	C	A	1.150e^-4	0.555	UPSTREAM CR43459 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20872231	X_20872231_SNP [dm3] X_21001204_SNP [dm6]	C	A	1.151e^-4	0.555	INTERGENIC
2L	3914410	2L_3914410_SNP [dm3] 2L_3914410_SNP [dm6]	A	T	1.152e^-4	0.555	UPSTREAM CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12988576	3R_12988576_SNP [dm3] 3R_17162854_SNP [dm6]	A	G	1.152e^-4	0.555	INTRON Mur89F
3R	13002017	3R_13002017_SNP [dm3] 3R_17176295_SNP [dm6]	A	G	1.159e^-4	0.557	INTRON Mur89F
3L	7837704	3L_7837704_SNP [dm3] 3L_7844604_SNP [dm6]	C	A	1.161e^-4	0.557	INTRON Pdp1	regulatory region REDfly_CRMs
X	10946033	X_10946033_SNP [dm3] X_11052000_SNP [dm6]	G	A	1.169e^-4	0.558	DOWNSTREAM CG1552 INTERGENIC
3R	13802855	3R_13802855_SNP [dm3] 3R_17977133_SNP [dm6]	A	G	1.173e^-4	0.558	INTRON cpo
2R	12987003	2R_12987003_SNP [dm3] 2R_17099498_SNP [dm6]	T	A	1.175e^-4	0.558	UTR_5_PRIME GstS1 UPSTREAM CG30456
3R	13286741	3R_13286741_SNP [dm3] 3R_17461019_SNP [dm6]	T	A	1.177e^-4	0.558	INTERGENIC
3R	13400339	3R_13400339_SNP [dm3] 3R_17574617_SNP [dm6]	G	T	1.182e^-4	0.558	INTERGENIC
3R	9584308	3R_9584308_SNP [dm3] 3R_13758586_SNP [dm6]	T	G	1.184e^-4	0.558	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19043632	3L_19043632_MNP [dm3] 3L_19050532_MNP [dm6]	ATGG	CCCT	1.185e^-4	0.558	DOWNSTREAM Acp76A INTERGENIC
2L	3921323	2L_3921323_SNP [dm3] 2L_3921323_SNP [dm6]	G	T	1.189e^-4	0.558	INTRON fred
3R	19490790	3R_19490790_SNP [dm3] 3R_23665068_SNP [dm6]	G	A	1.191e^-4	0.558	INTRON CG31145
3L	18520979	3L_18520979_SNP [dm3] 3L_18527879_SNP [dm6]	C	A	1.203e^-4	0.558	DOWNSTREAM CG32198 INTERGENIC
3L	16272406	3L_16272406_SNP [dm3] 3L_16279306_SNP [dm6]	T	A	1.204e^-4	0.558	UPSTREAM CG13050 INTERGENIC
3R	20296799	3R_20296799_SNP [dm3] 3R_24471077_SNP [dm6]	T	C	1.204e^-4	0.558	DOWNSTREAM CG31128 INTERGENIC
3R	12995517	3R_12995517_SNP [dm3] 3R_17169795_SNP [dm6]	G	A	1.205e^-4	0.558	INTRON Mur89F
X	8735698	X_8735698_SNP [dm3] X_8841665_SNP [dm6]	T	C	1.206e^-4	0.558	INTRON CG12075
X	18694640	X_18694640_SNP [dm3] X_18800607_SNP [dm6]	A	G	1.214e^-4	0.56	INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11919967	3L_11919967_SNP [dm3] 3L_11926867_SNP [dm6]	A	C	1.219e^-4	0.56	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4135535	3R_4135535_SNP [dm3] 3R_8309813_SNP [dm6]	G	T	1.219e^-4	0.56	NON_SYNONYMOUS_CODING CG11693	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_inv
3R	23671215	3R_23671215_SNP [dm3] 3R_27845493_SNP [dm6]	C	T	1.223e^-4	0.56	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
3R	9711019	3R_9711019_SNP [dm3] 3R_13885297_SNP [dm6]	C	G	1.224e^-4	0.56	INTERGENIC
3L	12440955	3L_12440955_SNP [dm3] 3L_12447855_SNP [dm6]	C	T	1.245e^-4	0.566	INTERGENIC
3R	18945796	3R_18945796_SNP [dm3] 3R_23120074_SNP [dm6]	G	T	1.246e^-4	0.566	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl
3L	16261776	3L_16261776_SNP [dm3] 3L_16268676_SNP [dm6]	C	T	1.251e^-4	0.566	UPSTREAM CG4950 & 1 other INTERGENIC
3R	23671204	3R_23671204_SNP [dm3] 3R_27845482_SNP [dm6]	C	T	1.251e^-4	0.566	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
3R	26169319	3R_26169319_INS [dm3] 3R_30343597_INS [dm6]	C	CTAC	1.263e^-4	0.566	INTRON hdc
3R	8083355	3R_8083355_SNP [dm3] 3R_12257633_SNP [dm6]	G	A	1.264e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13153891	3R_13153891_SNP [dm3] 3R_17328169_SNP [dm6]	T	G	1.265e^-4	0.566	INTRON beat-IIa
2L	5468332	2L_5468332_SNP [dm3] 2L_5468332_SNP [dm6]	A	G	1.270e^-4	0.566	DOWNSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12988722	3R_12988722_SNP [dm3] 3R_17163000_SNP [dm6]	C	T	1.277e^-4	0.566	INTRON Mur89F
3R	27630760	3R_27630760_SNP [dm3] 3R_31805038_SNP [dm6]	G	A	1.284e^-4	0.566	SYNONYMOUS_CODING CG42233 UPSTREAM CG1971	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2667127	2L_2667127_SNP [dm3] 2L_2667127_SNP [dm6]	T	C	1.290e^-4	0.566	DOWNSTREAM CG9879 INTERGENIC
3R	13001703	3R_13001703_SNP [dm3] 3R_17175981_SNP [dm6]	G	T	1.291e^-4	0.566	INTRON Mur89F
3R	5012291	3R_5012291_SNP [dm3] 3R_9186569_SNP [dm6]	T	C	1.295e^-4	0.566	INTRON pum
3R	24872380	3R_24872380_SNP [dm3] 3R_29046658_SNP [dm6]	A	G	1.299e^-4	0.566	UTR_3_PRIME Pkc98E
3R	13958062	3R_13958062_SNP [dm3] 3R_18132340_SNP [dm6]	A	G	1.300e^-4	0.566	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8211958	3R_8211958_SNP [dm3] 3R_12386236_SNP [dm6]	A	G	1.300e^-4	0.566	UPSTREAM CG34402 & 1 other DOWNSTREAM GstD11 INTERGENIC
2L	7379386	2L_7379386_SNP [dm3] 2L_7379386_SNP [dm6]	A	G	1.304e^-4	0.566	SYNONYMOUS_CODING ninaC
3R	6157656	3R_6157656_SNP [dm3] 3R_10331934_SNP [dm6]	T	C	1.304e^-4	0.566	NON_SYNONYMOUS_CODING CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	13857570	3R_13857570_SNP [dm3] 3R_18031848_SNP [dm6]	C	T	1.308e^-4	0.566	INTERGENIC
X	13002820	X_13002820_SNP [dm3] X_13108787_SNP [dm6]	C	T	1.308e^-4	0.566	UPSTREAM Fer3HCH INTRON CG43313
3R	5864372	3R_5864372_SNP [dm3] 3R_10038650_SNP [dm6]	G	T	1.314e^-4	0.566	INTRON Mical
2R	12699404	2R_12699404_SNP [dm3] 2R_16811899_SNP [dm6]	T	A	1.316e^-4	0.566	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
3R	27654071	3R_27654071_SNP [dm3] 3R_31828349_SNP [dm6]	G	T	1.317e^-4	0.566	INTRON RhoGAP100F
3L	11919963	3L_11919963_MNP [dm3] 3L_11926863_MNP [dm6]	ATT	GCA	1.318e^-4	0.566	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3922168	2L_3922168_INS [dm3] 2L_3922168_INS [dm6]	C	CC	1.320e^-4	0.566	INTRON fred
3L	2022424	3L_2022424_SNP [dm3] 3L_2022424_SNP [dm6]	T	A	1.320e^-4	0.566	NON_SYNONYMOUS_CODING CG42356 UPSTREAM CG42357
X	4805307	X_4805307_SNP [dm3] X_4911274_SNP [dm6]	T	C	1.322e^-4	0.566	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6264854	X_6264854_SNP [dm3] X_6370821_SNP [dm6]	C	A	1.325e^-4	0.566	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
2R	18009040	2R_18009040_DEL [dm3] 2R_22121535_DEL [dm6]	AAA	A	1.327e^-4	0.566	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18618985	2R_18618985_SNP [dm3] 2R_22731480_SNP [dm6]	G	A	1.329e^-4	0.566	SYNONYMOUS_CODING jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13015261	3R_13015261_DEL [dm3] 3R_17189539_DEL [dm6]	TGTCATCAC	T	1.331e^-4	0.566	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2823376	X_2823376_SNP [dm3] X_2929343_SNP [dm6]	G	C	1.334e^-4	0.566	UPSTREAM CG32793 INTRON kirre
3R	16892482	3R_16892482_SNP [dm3] 3R_21066760_SNP [dm6]	T	C	1.343e^-4	0.568	INTRON AnxB9
3R	27258873	3R_27258873_SNP [dm3] 3R_31433151_SNP [dm6]	T	A	1.345e^-4	0.568	INTRON Gprk2
3R	26280547	3R_26280547_SNP [dm3] 3R_30454825_SNP [dm6]	T	G	1.352e^-4	0.569	INTRON aralar1
X	8431727	X_8431727_SNP [dm3] X_8537694_SNP [dm6]	C	A	1.359e^-4	0.569	INTRON Nrg
3R	16891076	3R_16891076_SNP [dm3] 3R_21065354_SNP [dm6]	C	T	1.363e^-4	0.569	START_GAINED AnxB9 UTR_5_PRIME AnxB9 UPSTREAM Cortactin & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	21711380	2L_21711380_SNP [dm3] 2L_21711380_SNP [dm6]	T	C	1.364e^-4	0.569	SYNONYMOUS_CODING CG31619	TF binding site mE1_TFBS_HSA
2R	17348464	2R_17348464_SNP [dm3] 2R_21460959_SNP [dm6]	T	A	1.365e^-4	0.569	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	16953959	2L_16953959_INS [dm3] 2L_16953959_INS [dm6]	G	GTAAGTTATCAG...	1.368e^-4	0.569	INTERGENIC
3L	14081260	3L_14081260_DEL [dm3] 3L_14088160_DEL [dm6]	AAA	C	1.375e^-4	0.569	INTERGENIC
3L	1368283	3L_1368283_SNP [dm3] 3L_1368283_SNP [dm6]	G	A	1.375e^-4	0.569	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11556336	3R_11556336_SNP [dm3] 3R_15730614_SNP [dm6]	C	T	1.376e^-4	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17249416	2L_17249416_SNP [dm3] 2L_17249416_SNP [dm6]	A	G	1.380e^-4	0.569	INTRON beat-IIIc
3R	10318496	3R_10318496_INS [dm3] 3R_14492774_INS [dm6]	T	TTAGATTAGATAGATAGATA...	1.381e^-4	0.569	INTERGENIC
2R	19854651	2R_19854651_SNP [dm3] 2R_23967128_SNP [dm6]	A	T	1.388e^-4	0.569	UTR_3_PRIME CG34213 UPSTREAM or DOWNSTREAM Alas
2L	9126498	2L_9126498_SNP [dm3] 2L_9126498_SNP [dm6]	A	T	1.388e^-4	0.569	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	6959316	3L_6959316_SNP [dm3] 3L_6966216_SNP [dm6]	A	G	1.393e^-4	0.57	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4960893	X_4960893_SNP [dm3] X_5066860_SNP [dm6]	G	T	1.399e^-4	0.572	NON_SYNONYMOUS_CODING ovo	TF binding site mE1_TFBS_chinmo
3R	19307627	3R_19307627_SNP [dm3] 3R_23481905_SNP [dm6]	T	C	1.415e^-4	0.574	NON_SYNONYMOUS_CODING Ir94f
3L	16270739	3L_16270739_SNP [dm3] 3L_16277639_SNP [dm6]	G	A	1.419e^-4	0.574	SYNONYMOUS_CODING CG13065 DOWNSTREAM CG13050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11397545	2L_11397545_SNP [dm3] 2L_11397545_SNP [dm6]	A	G	1.419e^-4	0.574	INTERGENIC	regulatory region REDfly_CRMs
2R	17348637	2R_17348637_INS [dm3] 2R_21461132_INS [dm6]	C	CC	1.421e^-4	0.574	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	21991890	2L_21991890_SNP [dm3] 2L_21991890_SNP [dm6]	G	A	1.421e^-4	0.574	SYNONYMOUS_CODING CG2528	TF binding site mE1_TFBS_HSA
3L	6574926	3L_6574926_SNP [dm3] 3L_6581826_SNP [dm6]	T	A	1.429e^-4	0.576	INTRON CG18769 & 1 other
3R	16909540	3R_16909540_SNP [dm3] 3R_21083818_SNP [dm6]	T	G	1.437e^-4	0.577	UTR_3_PRIME RhoGAP93B
3R	16431300	3R_16431300_SNP [dm3] 3R_20605578_SNP [dm6]	G	A	1.438e^-4	0.577	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
2R	18013584	2R_18013584_SNP [dm3] 2R_22126079_SNP [dm6]	C	T	1.449e^-4	0.581	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
3R	10318514	3R_10318514_SNP [dm3] 3R_14492792_SNP [dm6]	T	C	1.458e^-4	0.582	INTERGENIC
3R	21643707	3R_21643707_SNP [dm3] 3R_25817985_SNP [dm6]	C	G	1.474e^-4	0.582	INTERGENIC
2R	8777589	2R_8777589_INS [dm3] 2R_12890084_INS [dm6]	T	TTTGTGACCG	1.475e^-4	0.582	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	19917254	2R_19917254_SNP [dm3] 2R_24029731_SNP [dm6]	C	T	1.479e^-4	0.582	SYNONYMOUS_CODING CG3163 UPSTREAM HSPC300 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	3267227	3R_3267227_SNP [dm3] 3R_7441505_SNP [dm6]	A	G	1.480e^-4	0.582	SYNONYMOUS_CODING CG14598
3R	14534716	3R_14534716_SNP [dm3] 3R_18708994_SNP [dm6]	G	A	1.480e^-4	0.582	INTRON VAChT & 1 other
3R	10936864	3R_10936864_SNP [dm3] 3R_15111142_SNP [dm6]	T	A	1.486e^-4	0.582	INTRON CG42788
2L	9300723	2L_9300723_SNP [dm3] 2L_9300723_SNP [dm6]	C	T	1.488e^-4	0.582	UTR_3_PRIME Ggamma30A
3L	15557048	3L_15557048_SNP [dm3] 3L_15563948_SNP [dm6]	C	A	1.491e^-4	0.582	UPSTREAM CG7739 INTRON CG7427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14565371	2R_14565371_SNP [dm3] 2R_18677866_SNP [dm6]	G	C	1.495e^-4	0.582	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	19833697	3R_19833697_SNP [dm3] 3R_24007975_SNP [dm6]	C	T	1.496e^-4	0.582	INTRON KrT95D
3R	12989221	3R_12989221_DEL [dm3] 3R_17163499_DEL [dm6]	ATAA	A	1.498e^-4	0.582	INTRON Mur89F
2R	8777610	2R_8777610_INS [dm3] 2R_12890105_INS [dm6]	A	AC	1.498e^-4	0.582	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	3191308	X_3191308_SNP [dm3] X_3297275_SNP [dm6]	C	A	1.507e^-4	0.582	INTRON dnc
2R	17326123	2R_17326123_SNP [dm3] 2R_21438618_SNP [dm6]	G	C	1.508e^-4	0.582	INTRON Sdc
3R	6152540	3R_6152540_SNP [dm3] 3R_10326818_SNP [dm6]	T	G	1.508e^-4	0.582	INTRON Bruce	TF binding site mE1_TFBS_inv
X	3101892	X_3101892_SNP [dm3] X_3207859_SNP [dm6]	G	A	1.510e^-4	0.582	INTRON dnc
3R	13000191	3R_13000191_SNP [dm3] 3R_17174469_SNP [dm6]	A	G	1.515e^-4	0.582	INTRON Mur89F
2L	1888111	2L_1888111_SNP [dm3] 2L_1888111_SNP [dm6]	A	G	1.516e^-4	0.582	INTRON CG7337	TF binding site BDTNP1_TFBS_da
2L	6519762	2L_6519762_SNP [dm3] 2L_6519762_SNP [dm6]	T	A	1.517e^-4	0.582	INTRON CG31637
2R	4302187	2R_4302187_SNP [dm3] 2R_8414682_SNP [dm6]	A	G	1.517e^-4	0.582	INTERGENIC
2L	9322018	2L_9322018_SNP [dm3] 2L_9322018_SNP [dm6]	G	C	1.531e^-4	0.586	INTERGENIC
X	1510575	X_1510575_SNP [dm3] X_1616542_SNP [dm6]	G	C	1.535e^-4	0.586	INTRON br & 1 other	TF binding site mE1_TFBS_Trl
3R	7178120	3R_7178120_SNP [dm3] 3R_11352398_SNP [dm6]	G	C	1.542e^-4	0.588	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11057075	2L_11057075_INS [dm3] 2L_11057075_INS [dm6]	T	TGAT	1.551e^-4	0.59	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16169439	2L_16169439_SNP [dm3] 2L_16169439_SNP [dm6]	A	T	1.555e^-4	0.59	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9593522	2R_9593522_SNP [dm3] 2R_13706017_SNP [dm6]	A	G	1.558e^-4	0.59	INTRON fas
3R	12570898	3R_12570898_SNP [dm3] 3R_16745176_SNP [dm6]	G	A	1.561e^-4	0.59	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	18428982	2L_18428982_SNP [dm3] 2L_18428982_SNP [dm6]	T	C	1.570e^-4	0.59	INTERGENIC
3L	4005200	3L_4005200_SNP [dm3] 3L_4005200_SNP [dm6]	C	T	1.571e^-4	0.59	UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6330010	2L_6330010_SNP [dm3] 2L_6330010_SNP [dm6]	C	T	1.573e^-4	0.59	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3R	12976320	3R_12976320_SNP [dm3] 3R_17150598_SNP [dm6]	A	T	1.574e^-4	0.59	UTR_5_PRIME CG5285 DOWNSTREAM Det	TF binding site mE1_TFBS_ttk
3L	12082973	3L_12082973_INS [dm3] 3L_12089873_INS [dm6]	G	GG	1.585e^-4	0.59	DOWNSTREAM CG17154 INTERGENIC
3R	10318488	3R_10318488_SNP [dm3] 3R_14492766_SNP [dm6]	A	T	1.593e^-4	0.59	INTERGENIC
3R	24007446	3R_24007446_SNP [dm3] 3R_28181724_SNP [dm6]	C	G	1.594e^-4	0.59	INTRON CG34354
2L	11397491	2L_11397491_SNP [dm3] 2L_11397491_SNP [dm6]	T	A	1.594e^-4	0.59	INTERGENIC	regulatory region REDfly_CRMs
2L	9158848	2L_9158848_SNP [dm3] 2L_9158848_SNP [dm6]	T	A	1.604e^-4	0.59	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	11012633	3L_11012633_SNP [dm3] 3L_11019533_SNP [dm6]	T	A	1.608e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13001879	3R_13001879_SNP [dm3] 3R_17176157_SNP [dm6]	C	T	1.608e^-4	0.59	INTRON Mur89F
2L	3832703	2L_3832703_DEL [dm3] 2L_3832703_DEL [dm6]	GTTG	G	1.613e^-4	0.59	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Kr
X	6469939	X_6469939_SNP [dm3] X_6575906_SNP [dm6]	A	C	1.615e^-4	0.59	INTRON CG34417
X	3866392	X_3866392_SNP [dm3] X_3972359_SNP [dm6]	C	T	1.615e^-4	0.59	DOWNSTREAM CR45481 INTERGENIC
3L	7405397	3L_7405397_SNP [dm3] 3L_7412297_SNP [dm6]	T	A	1.618e^-4	0.59	INTERGENIC
3R	24783148	3R_24783148_SNP [dm3] 3R_28957426_SNP [dm6]	T	A	1.629e^-4	0.59	INTRON CG14521
2R	15366398	2R_15366398_SNP [dm3] 2R_19478893_SNP [dm6]	A	T	1.630e^-4	0.59	INTRON par-1
X	13002922	X_13002922_SNP [dm3] X_13108889_SNP [dm6]	G	A	1.630e^-4	0.59	UPSTREAM Fer3HCH INTRON CG43313
3L	5444676	3L_5444676_DEL [dm3] 3L_5451576_DEL [dm6]	TT	T	1.630e^-4	0.59	INTERGENIC
3L	18140949	3L_18140949_DEL [dm3] 3L_18147849_DEL [dm6]	AT	A	1.631e^-4	0.59	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11489518	3R_11489518_SNP [dm3] 3R_15663796_SNP [dm6]	C	A	1.633e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10318540	3R_10318540_SNP [dm3] 3R_14492818_SNP [dm6]	A	C	1.636e^-4	0.59	INTERGENIC
3L	10458731	3L_10458731_SNP [dm3] 3L_10465631_SNP [dm6]	T	A	1.636e^-4	0.59	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTRON S-Lap3
3L	13266821	3L_13266821_SNP [dm3] 3L_13273721_SNP [dm6]	T	A	1.642e^-4	0.59	INTRON caps
3R	13015260	3R_13015260_SNP [dm3] 3R_17189538_SNP [dm6]	T	C	1.644e^-4	0.59	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3730505	3L_3730505_SNP [dm3] 3L_3730505_SNP [dm6]	C	G	1.650e^-4	0.59	INTRON CG32264
3L	13911530	3L_13911530_SNP [dm3] 3L_13918430_SNP [dm6]	C	T	1.653e^-4	0.59	INTRON Rgl
3R	13013818	3R_13013818_SNP [dm3] 3R_17188096_SNP [dm6]	G	C	1.659e^-4	0.59	INTRON Mur89F
3R	9630608	3R_9630608_SNP [dm3] 3R_13804886_SNP [dm6]	G	A	1.660e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13000527	2R_13000527_SNP [dm3] 2R_17113022_SNP [dm6]	G	A	1.661e^-4	0.59	INTRON CG15611
3R	23671200	3R_23671200_SNP [dm3] 3R_27845478_SNP [dm6]	G	A	1.661e^-4	0.59	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
3R	13553261	3R_13553261_SNP [dm3] 3R_17727539_SNP [dm6]	G	A	1.663e^-4	0.59	INTRON Lgr1
X	4139741	X_4139741_SNP [dm3] X_4245708_SNP [dm6]	C	T	1.665e^-4	0.59	INTRON Muc4B	TF binding site mE1_TFBS_sens
3L	1368332	3L_1368332_SNP [dm3] 3L_1368332_SNP [dm6]	A	T	1.671e^-4	0.59	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3472082	2L_3472082_SNP [dm3] 2L_3472082_SNP [dm6]	C	G	1.674e^-4	0.59	SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	11336408	3L_11336408_INS [dm3] 3L_11343308_INS [dm6]	A	AA	1.674e^-4	0.59	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	9154823	2L_9154823_SNP [dm3] 2L_9154823_SNP [dm6]	C	T	1.676e^-4	0.59	INTRON CG32982
3R	23725960	3R_23725960_SNP [dm3] 3R_27900238_SNP [dm6]	C	A	1.683e^-4	0.59	INTRON CG34353
3R	16698632	3R_16698632_SNP [dm3] 3R_20872910_SNP [dm6]	A	C	1.693e^-4	0.59	UPSTREAM TotC INTERGENIC
3R	24199095	3R_24199095_SNP [dm3] 3R_28373373_SNP [dm6]	C	T	1.693e^-4	0.59	INTERGENIC
2L	5126814	2L_5126814_SNP [dm3] 2L_5126814_SNP [dm6]	G	T	1.694e^-4	0.59	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16285906	3L_16285906_SNP [dm3] 3L_16292806_SNP [dm6]	G	T	1.699e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18945407	3R_18945407_SNP [dm3] 3R_23119685_SNP [dm6]	A	T	1.704e^-4	0.59	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl
X	3153711	X_3153711_SNP [dm3] X_3259678_SNP [dm6]	C	G	1.707e^-4	0.59	INTRON dnc
2L	3913266	2L_3913266_SNP [dm3] 2L_3913266_SNP [dm6]	C	T	1.712e^-4	0.59	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8472668	X_8472668_SNP [dm3] X_8578635_SNP [dm6]	T	C	1.716e^-4	0.59	INTRON CG12065
X	2694608	X_2694608_SNP [dm3] X_2800575_SNP [dm6]	A	T	1.721e^-4	0.59	INTRON kirre
3R	13010019	3R_13010019_SNP [dm3] 3R_17184297_SNP [dm6]	C	A	1.723e^-4	0.59	INTRON Mur89F
3R	25212787	3R_25212787_SNP [dm3] 3R_29387065_SNP [dm6]	G	A	1.723e^-4	0.59	INTRON Ptp99A
2L	2670674	2L_2670674_SNP [dm3] 2L_2670674_SNP [dm6]	C	T	1.727e^-4	0.59	SYNONYMOUS_CODING Gr23a UPSTREAM Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	27357153	3R_27357153_SNP [dm3] 3R_31531431_SNP [dm6]	T	A	1.728e^-4	0.59	INTERGENIC
2R	8777607	2R_8777607_SNP [dm3] 2R_12890102_SNP [dm6]	T	A	1.731e^-4	0.59	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	7442018	2R_7442018_SNP [dm3] 2R_11554513_SNP [dm6]	C	G	1.733e^-4	0.59	INTERGENIC
3R	22746544	3R_22746544_SNP [dm3] 3R_26920822_SNP [dm6]	A	C	1.735e^-4	0.59	INTRON sda
3L	6696384	3L_6696384_SNP [dm3] 3L_6703284_SNP [dm6]	A	C	1.736e^-4	0.59	UTR_5_PRIME SP1173 INTRON SP1173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24992882	3R_24992882_SNP [dm3] 3R_29167160_SNP [dm6]	T	C	1.736e^-4	0.59	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16530589	2R_16530589_SNP [dm3] 2R_20643084_SNP [dm6]	A	G	1.740e^-4	0.59	SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 UPSTREAM DMAP1 DOWNSTREAM CG11110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25190698	3R_25190698_SNP [dm3] 3R_29364976_SNP [dm6]	C	A	1.743e^-4	0.59	INTERGENIC
2L	11787494	2L_11787494_SNP [dm3] 2L_11787494_SNP [dm6]	A	G	1.748e^-4	0.59	UPSTREAM CG14931 INTERGENIC
3L	2675774	3L_2675774_SNP [dm3] 3L_2675774_SNP [dm6]	C	A	1.752e^-4	0.59	INTRON Fife
3R	27155389	3R_27155389_SNP [dm3] 3R_31329667_SNP [dm6]	A	G	1.766e^-4	0.59	INTRON CG34347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26116531	3R_26116531_SNP [dm3] 3R_30290809_SNP [dm6]	A	G	1.767e^-4	0.59	INTRON hdc
2L	7163267	2L_7163267_SNP [dm3] 2L_7163267_SNP [dm6]	C	A	1.768e^-4	0.59	INTERGENIC
3R	7683197	3R_7683197_SNP [dm3] 3R_11857475_SNP [dm6]	C	A	1.771e^-4	0.59	INTRON CG6959
2R	17322798	2R_17322798_SNP [dm3] 2R_21435293_SNP [dm6]	C	T	1.773e^-4	0.59	INTRON Sdc
3L	13077098	3L_13077098_SNP [dm3] 3L_13083998_SNP [dm6]	T	A	1.775e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	13002921	X_13002921_SNP [dm3] X_13108888_SNP [dm6]	A	G	1.779e^-4	0.59	UPSTREAM Fer3HCH INTRON CG43313
3L	1469004	3L_1469004_SNP [dm3] 3L_1469004_SNP [dm6]	T	C	1.785e^-4	0.59	DOWNSTREAM rho INTRON Ptp61F
3L	13911077	3L_13911077_SNP [dm3] 3L_13917977_SNP [dm6]	T	A	1.788e^-4	0.59	INTRON Rgl
X	9604529	X_9604529_SNP [dm3] X_9710496_SNP [dm6]	C	T	1.789e^-4	0.59	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24064158	3R_24064158_SNP [dm3] 3R_28238436_SNP [dm6]	A	G	1.790e^-4	0.59	UTR_3_PRIME CG34354 EXON CR45041
3L	10546797	3L_10546797_SNP [dm3] 3L_10553697_SNP [dm6]	A	G	1.792e^-4	0.59	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	8083447	3R_8083447_SNP [dm3] 3R_12257725_SNP [dm6]	T	C	1.797e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25221537	3R_25221537_DEL [dm3] 3R_29395815_DEL [dm6]	GTG	G	1.799e^-4	0.59	INTRON Ptp99A
3L	7279316	3L_7279316_SNP [dm3] 3L_7286216_SNP [dm6]	G	A	1.812e^-4	0.59	INTRON unc-13-4A
3L	19043639	3L_19043639_INS [dm3] 3L_19050539_INS [dm6]	T	TCT	1.822e^-4	0.59	DOWNSTREAM Acp76A INTERGENIC
3R	10926871	3R_10926871_SNP [dm3] 3R_15101149_SNP [dm6]	C	T	1.822e^-4	0.59	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13584208	3L_13584208_SNP [dm3] 3L_13591108_SNP [dm6]	T	A	1.824e^-4	0.59	INTRON bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3698711	3L_3698711_DEL [dm3] 3L_3698711_DEL [dm6]	TT	T	1.829e^-4	0.59	INTERGENIC
3L	10609494	3L_10609494_SNP [dm3] 3L_10616394_SNP [dm6]	C	G	1.834e^-4	0.59	INTERGENIC
X	8513032	X_8513032_SNP [dm3] X_8618999_SNP [dm6]	C	A	1.836e^-4	0.59	INTERGENIC	regulatory region REDfly_CRMs
3R	24447975	3R_24447975_SNP [dm3] 3R_28622253_SNP [dm6]	T	G	1.841e^-4	0.59	INTRON CG10011
3R	6152798	3R_6152798_SNP [dm3] 3R_10327076_SNP [dm6]	C	T	1.849e^-4	0.59	NON_SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
3L	7405068	3L_7405068_SNP [dm3] 3L_7411968_SNP [dm6]	T	A	1.850e^-4	0.59	INTERGENIC
3L	5245471	3L_5245471_SNP [dm3] 3L_5252371_SNP [dm6]	C	G	1.851e^-4	0.59	INTRON shep
3R	13001976	3R_13001976_SNP [dm3] 3R_17176254_SNP [dm6]	C	G	1.854e^-4	0.59	INTRON Mur89F
X	18741871	X_18741871_SNP [dm3] X_18847838_SNP [dm6]	A	G	1.855e^-4	0.59	SYNONYMOUS_CODING CG7280 INTRON CG34422	TF binding site mE1_TFBS_chinmo
3R	12990276	3R_12990276_SNP [dm3] 3R_17164554_SNP [dm6]	G	T	1.856e^-4	0.59	INTRON Mur89F
3R	17372180	3R_17372180_INS [dm3] 3R_21546458_INS [dm6]	C	TT	1.857e^-4	0.59	INTERGENIC
3R	12985473	3R_12985473_SNP [dm3] 3R_17159751_SNP [dm6]	A	C	1.865e^-4	0.59	NON_SYNONYMOUS_CODING Mur89F
2L	10603033	2L_10603033_SNP [dm3] 2L_10603033_SNP [dm6]	G	T	1.868e^-4	0.59	INTRON Trim9
3R	27050957	3R_27050957_SNP [dm3] 3R_31225235_SNP [dm6]	A	G	1.873e^-4	0.59	UTR_5_PRIME CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	11128863	3R_11128863_SNP [dm3] 3R_15303141_SNP [dm6]	T	C	1.875e^-4	0.59	INTRON Tm1
X	22127518	X_22127518_SNP [dm3] X_22725682_SNP [dm6]	T	A	1.878e^-4	0.59	INTRON CR44997
3R	25170792	3R_25170792_SNP [dm3] 3R_29345070_SNP [dm6]	C	G	1.879e^-4	0.59	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19922645	X_19922645_SNP [dm3] X_20028612_SNP [dm6]	G	A	1.883e^-4	0.59	NON_SYNONYMOUS_CODING Dop2R	TF binding site mE1_TFBS_chinmo
X	13002881	X_13002881_SNP [dm3] X_13108848_SNP [dm6]	C	G	1.884e^-4	0.59	UPSTREAM Fer3HCH INTRON CG43313
2R	17346210	2R_17346210_SNP [dm3] 2R_21458705_SNP [dm6]	A	G	1.885e^-4	0.59	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17680312	X_17680312_SNP [dm3] X_17786279_SNP [dm6]	T	A	1.886e^-4	0.59	INTERGENIC
3R	10580568	3R_10580568_SNP [dm3] 3R_14754846_SNP [dm6]	A	G	1.892e^-4	0.59	UPSTREAM CG7362 INTRON jvl
3L	16269897	3L_16269897_SNP [dm3] 3L_16276797_SNP [dm6]	A	C	1.897e^-4	0.59	UPSTREAM CG13065 INTERGENIC
3L	7405079	3L_7405079_SNP [dm3] 3L_7411979_SNP [dm6]	G	A	1.900e^-4	0.59	INTERGENIC
3R	6749710	3R_6749710_SNP [dm3] 3R_10923988_SNP [dm6]	C	T	1.900e^-4	0.59	INTERGENIC
2L	2575020	2L_2575020_SNP [dm3] 2L_2575020_SNP [dm6]	G	A	1.905e^-4	0.59	UTR_5_PRIME Rad1 & 1 other DOWNSTREAM insv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19148634	3R_19148634_SNP [dm3] 3R_23322912_SNP [dm6]	A	C	1.909e^-4	0.59	INTRON pnt
3R	13466441	3R_13466441_SNP [dm3] 3R_17640719_SNP [dm6]	C	T	1.910e^-4	0.59	INTRON CG43175
3L	16281847	3L_16281847_SNP [dm3] 3L_16288747_SNP [dm6]	A	C	1.913e^-4	0.59	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7170103	3R_7170103_SNP [dm3] 3R_11344381_SNP [dm6]	G	A	1.914e^-4	0.59	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	17677840	3L_17677840_SNP [dm3] 3L_17684740_SNP [dm6]	T	A	1.916e^-4	0.59	INTERGENIC
2L	5160521	2L_5160521_SNP [dm3] 2L_5160521_SNP [dm6]	T	C	1.919e^-4	0.59	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13266279	3L_13266279_SNP [dm3] 3L_13273179_SNP [dm6]	C	A	1.926e^-4	0.59	INTRON caps
2L	9315544	2L_9315544_SNP [dm3] 2L_9315544_SNP [dm6]	T	G	1.926e^-4	0.59	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	1.931e^-4	0.59	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	8735701	X_8735701_SNP [dm3] X_8841668_SNP [dm6]	A	C	1.931e^-4	0.59	INTRON CG12075
X	6561142	X_6561142_SNP [dm3] X_6667109_SNP [dm6]	A	G	1.940e^-4	0.59	UTR_3_PRIME Ctr1A
2R	17323373	2R_17323373_SNP [dm3] 2R_21435868_SNP [dm6]	G	C	1.942e^-4	0.59	INTRON Sdc
2L	9610785	2L_9610785_SNP [dm3] 2L_9610785_SNP [dm6]	G	T	1.943e^-4	0.59	SYNONYMOUS_CODING gcm2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1362467	2L_1362467_SNP [dm3] 2L_1362467_SNP [dm6]	A	T	1.948e^-4	0.59	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5592112	3L_5592112_SNP [dm3] 3L_5599012_SNP [dm6]	G	C	1.950e^-4	0.59	SYNONYMOUS_CODING CG10591	TF binding site mE1_TFBS_chinmo
2R	19416642	2R_19416642_SNP [dm3] 2R_23529119_SNP [dm6]	A	G	1.952e^-4	0.59	DOWNSTREAM mi INTRON bw
X	18382799	X_18382799_SNP [dm3] X_18488766_SNP [dm6]	T	C	1.955e^-4	0.59	SYNONYMOUS_CODING CG15046	TF binding site mE1_TFBS_chinmo
X	13002877	X_13002877_SNP [dm3] X_13108844_SNP [dm6]	C	T	1.957e^-4	0.59	UPSTREAM Fer3HCH INTRON CG43313
3R	13754452	3R_13754452_SNP [dm3] 3R_17928730_SNP [dm6]	A	G	1.958e^-4	0.59	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11397554	2L_11397554_SNP [dm3] 2L_11397554_SNP [dm6]	A	G	1.958e^-4	0.59	INTERGENIC	regulatory region REDfly_CRMs
3R	19142544	3R_19142544_SNP [dm3] 3R_23316822_SNP [dm6]	A	G	1.961e^-4	0.59	INTRON pnt
X	8735676	X_8735676_SNP [dm3] X_8841643_SNP [dm6]	G	A	1.968e^-4	0.59	INTRON CG12075
3L	11836489	3L_11836489_SNP [dm3] 3L_11843389_SNP [dm6]	G	T	1.970e^-4	0.59	INTERGENIC
X	2823428	X_2823428_SNP [dm3] X_2929395_SNP [dm6]	A	G	1.970e^-4	0.59	UPSTREAM CG32793 INTRON kirre
3R	11337076	3R_11337076_SNP [dm3] 3R_15511354_SNP [dm6]	T	C	1.971e^-4	0.59	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1319316	2L_1319316_SNP [dm3] 2L_1319316_SNP [dm6]	G	T	1.973e^-4	0.59	INTERGENIC
3L	16270089	3L_16270089_SNP [dm3] 3L_16276989_SNP [dm6]	T	A	1.973e^-4	0.59	UPSTREAM CG13065 INTERGENIC
3R	13000186	3R_13000186_SNP [dm3] 3R_17174464_SNP [dm6]	C	T	1.975e^-4	0.59	INTRON Mur89F
X	6469856	X_6469856_SNP [dm3] X_6575823_SNP [dm6]	T	C	1.980e^-4	0.59	INTRON CG34417
3R	17899396	3R_17899396_SNP [dm3] 3R_22073674_SNP [dm6]	A	G	1.994e^-4	0.592	UTR_3_PRIME how INTRON how
3R	27341568	3R_27341568_SNP [dm3] 3R_31515846_SNP [dm6]	T	A	1.995e^-4	0.592	INTERGENIC
3R	22745853	3R_22745853_SNP [dm3] 3R_26920131_SNP [dm6]	C	G	1.996e^-4	0.592	INTRON sda
3R	25233747	3R_25233747_SNP [dm3] 3R_29408025_SNP [dm6]	T	A	1.997e^-4	0.592	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3L	18132048	3L_18132048_SNP [dm3] 3L_18138948_SNP [dm6]	A	C	2.005e^-4	0.593	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13659761	3R_13659761_SNP [dm3] 3R_17834039_SNP [dm6]	G	A	2.014e^-4	0.595	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16953954	2L_16953954_SNP [dm3] 2L_16953954_SNP [dm6]	T	A	2.017e^-4	0.595	INTERGENIC
3R	23714963	3R_23714963_SNP [dm3] 3R_27889241_SNP [dm6]	T	G	2.022e^-4	0.595	INTRON CG34353
2L	17057759	2L_17057759_INS [dm3] 2L_17057759_INS [dm6]	C	CC	2.029e^-4	0.596	INTERGENIC
2R	19124875	2R_19124875_SNP [dm3] 2R_23237352_SNP [dm6]	G	A	2.032e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7837377	2L_7837377_SNP [dm3] 2L_7837377_SNP [dm6]	G	T	2.045e^-4	0.599	INTERGENIC
2R	14734605	2R_14734605_SNP [dm3] 2R_18847100_SNP [dm6]	C	T	2.054e^-4	0.6	NON_SYNONYMOUS_CODING CG15100 UPSTREAM CG15099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3915828	2L_3915828_SNP [dm3] 2L_3915828_SNP [dm6]	A	T	2.060e^-4	0.6	INTRON fred
3R	10369471	3R_10369471_SNP [dm3] 3R_14543749_SNP [dm6]	T	C	2.063e^-4	0.6	INTRON Pde6
3L	12775636	3L_12775636_SNP [dm3] 3L_12782536_SNP [dm6]	T	A	2.068e^-4	0.6	NON_SYNONYMOUS_CODING CG17666 UPSTREAM CG17666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11397516	2L_11397516_SNP [dm3] 2L_11397516_SNP [dm6]	C	G	2.074e^-4	0.6	INTERGENIC	regulatory region REDfly_CRMs
X	14546312	X_14546312_SNP [dm3] X_14652279_SNP [dm6]	A	G	2.077e^-4	0.6	SYNONYMOUS_CODING NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	2471341	2L_2471341_SNP [dm3] 2L_2471341_SNP [dm6]	C	T	2.080e^-4	0.6	DOWNSTREAM CR45286 INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	4805360	X_4805360_SNP [dm3] X_4911327_SNP [dm6]	A	C	2.084e^-4	0.6	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21125052	2L_21125052_SNP [dm3] 2L_21125052_SNP [dm6]	C	A	2.090e^-4	0.6	INTRON Nhe2
X	14108017	X_14108017_INS [dm3] X_14213984_INS [dm6]	C	CTT	2.093e^-4	0.6	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11216091	3L_11216091_SNP [dm3] 3L_11222991_SNP [dm6]	A	T	2.100e^-4	0.6	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9324232	2L_9324232_SNP [dm3] 2L_9324232_SNP [dm6]	C	G	2.100e^-4	0.6	INTERGENIC
3R	26110943	3R_26110943_SNP [dm3] 3R_30285221_SNP [dm6]	T	C	2.103e^-4	0.6	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6128489	3L_6128489_SNP [dm3] 3L_6135389_SNP [dm6]	C	T	2.107e^-4	0.6	UPSTREAM Lcp65Ag1 DOWNSTREAM Lcp65Af INTERGENIC
X	12972304	X_12972304_SNP [dm3] X_13078271_SNP [dm6]	G	C	2.108e^-4	0.6	UTR_3_PRIME rad DOWNSTREAM hep
X	4560398	X_4560398_SNP [dm3] X_4666365_SNP [dm6]	G	A	2.112e^-4	0.6	DOWNSTREAM rap INTRON CG3009
3R	7550976	3R_7550976_SNP [dm3] 3R_11725254_SNP [dm6]	G	C	2.112e^-4	0.6	INTRON CG12594	TF binding site mE1_TFBS_inv
3R	22746543	3R_22746543_SNP [dm3] 3R_26920821_SNP [dm6]	T	C	2.113e^-4	0.6	INTRON sda
3R	15166857	3R_15166857_SNP [dm3] 3R_19341135_SNP [dm6]	G	A	2.121e^-4	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9313944	2L_9313944_SNP [dm3] 2L_9313944_SNP [dm6]	A	T	2.123e^-4	0.6	INTERGENIC
3R	12998775	3R_12998775_SNP [dm3] 3R_17173053_SNP [dm6]	G	A	2.124e^-4	0.6	INTRON Mur89F
3L	10557085	3L_10557085_SNP [dm3] 3L_10563985_SNP [dm6]	T	C	2.126e^-4	0.6	INTRON A2bp1
3L	4006074	3L_4006074_SNP [dm3] 3L_4006074_SNP [dm6]	C	G	2.132e^-4	0.6	UTR_3_PRIME CG14985 DOWNSTREAM CG14985	TF binding site mE1_TFBS_cad
3L	3703184	3L_3703184_SNP [dm3] 3L_3703184_SNP [dm6]	G	T	2.132e^-4	0.6	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23725973	3R_23725973_SNP [dm3] 3R_27900251_SNP [dm6]	C	A	2.135e^-4	0.6	INTRON CG34353
3L	1346730	3L_1346730_SNP [dm3] 3L_1346730_SNP [dm6]	A	T	2.136e^-4	0.6	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
3L	11044114	3L_11044114_SNP [dm3] 3L_11051014_SNP [dm6]	T	C	2.136e^-4	0.6	UPSTREAM CG43693 DOWNSTREAM CR45119 INTRON CG43693
2L	3915827	2L_3915827_SNP [dm3] 2L_3915827_SNP [dm6]	A	T	2.136e^-4	0.6	INTRON fred
3R	13004767	3R_13004767_SNP [dm3] 3R_17179045_SNP [dm6]	A	T	2.144e^-4	0.601	INTRON Mur89F
3L	13011199	3L_13011199_SNP [dm3] 3L_13018099_SNP [dm6]	A	T	2.151e^-4	0.602	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
3R	26030526	3R_26030526_SNP [dm3] 3R_30204804_SNP [dm6]	G	A	2.153e^-4	0.602	INTERGENIC
3R	11577558	3R_11577558_SNP [dm3] 3R_15751836_SNP [dm6]	G	T	2.158e^-4	0.602	INTERGENIC
3L	1895356	3L_1895356_SNP [dm3] 3L_1895356_SNP [dm6]	T	C	2.160e^-4	0.602	INTRON CG1887
3R	3147611	3R_3147611_SNP [dm3] 3R_7321889_SNP [dm6]	C	G	2.166e^-4	0.602	INTERGENIC
3L	16279182	3L_16279182_SNP [dm3] 3L_16286082_SNP [dm6]	T	G	2.167e^-4	0.602	UPSTREAM CG13047 INTERGENIC
3L	7407067	3L_7407067_DEL [dm3] 3L_7413967_DEL [dm6]	CTTTCAACTCCC...	C	2.174e^-4	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11311630	2R_11311630_SNP [dm3] 2R_15424125_SNP [dm6]	C	G	2.181e^-4	0.603	UTR_5_PRIME CG30472 UPSTREAM CG43729 INTRON CG43729
2L	9308222	2L_9308222_INS [dm3] 2L_9308222_INS [dm6]	T	TCTTACAA	2.183e^-4	0.603	INTERGENIC
X	7133473	X_7133473_SNP [dm3] X_7239440_SNP [dm6]	G	C	2.183e^-4	0.603	SYNONYMOUS_CODING CG9650 INTRON CR44357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11823366	X_11823366_SNP [dm3] X_11929333_SNP [dm6]	A	C	2.191e^-4	0.604	SYNONYMOUS_CODING CG10362
2R	10785621	2R_10785621_SNP [dm3] 2R_14898116_SNP [dm6]	A	T	2.192e^-4	0.604	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17322812	2R_17322812_SNP [dm3] 2R_21435307_SNP [dm6]	T	A	2.196e^-4	0.604	INTRON Sdc
2L	7380005	2L_7380005_SNP [dm3] 2L_7380005_SNP [dm6]	T	C	2.208e^-4	0.606	SYNONYMOUS_CODING ninaC
3R	10505681	3R_10505681_SNP [dm3] 3R_14679959_SNP [dm6]	G	A	2.209e^-4	0.606	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13596133	3R_13596133_SNP [dm3] 3R_17770411_SNP [dm6]	A	G	2.213e^-4	0.606	SYNONYMOUS_CODING CG43102
3R	13117685	3R_13117685_SNP [dm3] 3R_17291963_SNP [dm6]	G	C	2.215e^-4	0.606	INTERGENIC
3L	5245376	3L_5245376_SNP [dm3] 3L_5252276_SNP [dm6]	C	G	2.221e^-4	0.606	INTRON shep
2L	21358516	2L_21358516_SNP [dm3] 2L_21358516_SNP [dm6]	T	C	2.224e^-4	0.606	DOWNSTREAM Tsp39D INTERGENIC	transposable element FlyBase
2R	17444084	2R_17444084_SNP [dm3] 2R_21556579_SNP [dm6]	A	C	2.231e^-4	0.607	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11805585	3R_11805585_SNP [dm3] 3R_15979863_SNP [dm6]	C	T	2.234e^-4	0.607	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10570107	2R_10570107_SNP [dm3] 2R_14682602_SNP [dm6]	T	C	2.251e^-4	0.61	INTRON mspo
3L	11919982	3L_11919982_SNP [dm3] 3L_11926882_SNP [dm6]	A	T	2.252e^-4	0.61	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5013334	3R_5013334_SNP [dm3] 3R_9187612_SNP [dm6]	G	A	2.260e^-4	0.611	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19534395	3R_19534395_SNP [dm3] 3R_23708673_SNP [dm6]	T	G	2.262e^-4	0.611	DOWNSTREAM CG31414 INTERGENIC
X	5574033	X_5574033_SNP [dm3] X_5680000_SNP [dm6]	G	T	2.274e^-4	0.613	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	6574873	3L_6574873_DEL [dm3] 3L_6581773_DEL [dm6]	GCCTTAACACCCTTGGG...	G	2.283e^-4	0.613	INTRON CG18769 & 1 other
3L	16410413	3L_16410413_SNP [dm3] 3L_16417313_SNP [dm6]	T	C	2.285e^-4	0.613	UPSTREAM CG4573 DOWNSTREAM Aats-tyr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5376455	3L_5376455_SNP [dm3] 3L_5383355_SNP [dm6]	T	A	2.285e^-4	0.613	UPSTREAM Ir64a INTERGENIC
3R	9736544	3R_9736544_SNP [dm3] 3R_13910822_SNP [dm6]	G	A	2.286e^-4	0.613	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11577534	3R_11577534_SNP [dm3] 3R_15751812_SNP [dm6]	T	A	2.293e^-4	0.614	INTERGENIC
3L	16270724	3L_16270724_SNP [dm3] 3L_16277624_SNP [dm6]	C	T	2.294e^-4	0.614	SYNONYMOUS_CODING CG13065 DOWNSTREAM CG13050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17207239	3L_17207239_SNP [dm3] 3L_17214139_SNP [dm6]	C	A	2.301e^-4	0.615	INTRON Rbp6
3R	13002002	3R_13002002_SNP [dm3] 3R_17176280_SNP [dm6]	G	A	2.313e^-4	0.617	INTRON Mur89F
3L	16279181	3L_16279181_SNP [dm3] 3L_16286081_SNP [dm6]	A	G	2.320e^-4	0.617	UPSTREAM CG13047 INTERGENIC
2L	11397492	2L_11397492_SNP [dm3] 2L_11397492_SNP [dm6]	T	C	2.324e^-4	0.617	INTERGENIC	regulatory region REDfly_CRMs
3L	3530862	3L_3530862_SNP [dm3] 3L_3530862_SNP [dm6]	T	G	2.324e^-4	0.617	INTRON Eip63E
2R	7679517	2R_7679517_SNP [dm3] 2R_11792012_SNP [dm6]	A	T	2.327e^-4	0.617	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	21394099	3R_21394099_DEL [dm3] 3R_25568377_DEL [dm6]	AA	A	2.329e^-4	0.617	INTRON msi
X	2820867	X_2820867_SNP [dm3] X_2926834_SNP [dm6]	A	C	2.337e^-4	0.618	INTRON kirre & 1 other
3L	11012638	3L_11012638_SNP [dm3] 3L_11019538_SNP [dm6]	A	G	2.347e^-4	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	27203967	3R_27203967_SNP [dm3] 3R_31378245_SNP [dm6]	A	T	2.352e^-4	0.62	INTERGENIC
3R	7683069	3R_7683069_SNP [dm3] 3R_11857347_SNP [dm6]	C	T	2.357e^-4	0.62	INTRON CG6959
3L	18132040	3L_18132040_SNP [dm3] 3L_18138940_SNP [dm6]	T	G	2.360e^-4	0.62	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19597222	X_19597222_SNP [dm3] X_19703189_SNP [dm6]	A	G	2.363e^-4	0.62	SYNONYMOUS_CODING CG14232 UPSTREAM CG14230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14546302	X_14546302_SNP [dm3] X_14652269_SNP [dm6]	C	T	2.375e^-4	0.62	NON_SYNONYMOUS_CODING NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9301328	2L_9301328_SNP [dm3] 2L_9301328_SNP [dm6]	C	T	2.376e^-4	0.62	UTR_3_PRIME Ggamma30A
3R	12976338	3R_12976338_SNP [dm3] 3R_17150616_SNP [dm6]	A	G	2.381e^-4	0.62	UTR_5_PRIME CG5285 DOWNSTREAM Det	TF binding site mE1_TFBS_ttk
3R	26110397	3R_26110397_SNP [dm3] 3R_30284675_SNP [dm6]	A	G	2.381e^-4	0.62	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	8345306	X_8345306_SNP [dm3] X_8451273_SNP [dm6]	G	A	2.384e^-4	0.62	INTRON org-1
3R	18046311	3R_18046311_SNP [dm3] 3R_22220589_SNP [dm6]	G	T	2.388e^-4	0.62	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14660193	3R_14660193_SNP [dm3] 3R_18834471_SNP [dm6]	A	G	2.388e^-4	0.62	INTRON CG18208
X	18982564	X_18982564_SNP [dm3] X_19088531_SNP [dm6]	C	T	2.389e^-4	0.62	INTERGENIC
3R	13195219	3R_13195219_SNP [dm3] 3R_17369497_SNP [dm6]	G	A	2.390e^-4	0.62	INTERGENIC
3L	12054733	3L_12054733_SNP [dm3] 3L_12061633_SNP [dm6]	C	T	2.400e^-4	0.62	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18982699	X_18982699_SNP [dm3] X_19088666_SNP [dm6]	C	A	2.404e^-4	0.62	INTERGENIC
X	19376701	X_19376701_SNP [dm3] X_19482668_SNP [dm6]	C	T	2.405e^-4	0.62	SYNONYMOUS_CODING Nat1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13008832	3R_13008832_SNP [dm3] 3R_17183110_SNP [dm6]	C	A	2.409e^-4	0.62	INTRON Mur89F
3R	24447920	3R_24447920_SNP [dm3] 3R_28622198_SNP [dm6]	C	T	2.409e^-4	0.62	INTRON CG10011
3R	9726662	3R_9726662_SNP [dm3] 3R_13900940_SNP [dm6]	T	C	2.410e^-4	0.62	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19216585	3L_19216585_SNP [dm3] 3L_19223485_SNP [dm6]	T	C	2.429e^-4	0.621	INTRON fz2
3L	7407732	3L_7407732_SNP [dm3] 3L_7414632_SNP [dm6]	A	G	2.430e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18813711	2R_18813711_SNP [dm3] 2R_22926188_SNP [dm6]	C	T	2.430e^-4	0.621	UPSTREAM CG42678 INTRON CG42678	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18140901	3L_18140901_SNP [dm3] 3L_18147801_SNP [dm6]	A	C	2.437e^-4	0.621	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17639810	2L_17639810_SNP [dm3] 2L_17639810_SNP [dm6]	T	C	2.440e^-4	0.621	INTERGENIC
3L	16718790	3L_16718790_SNP [dm3] 3L_16725690_SNP [dm6]	G	A	2.444e^-4	0.621	UTR_3_PRIME CG13026 UPSTREAM PGRP-SB2 DOWNSTREAM CG13031
3L	7986103	3L_7986103_SNP [dm3] 3L_7993003_SNP [dm6]	C	G	2.448e^-4	0.621	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	11919987	3L_11919987_MNP [dm3] 3L_11926887_MNP [dm6]	CCT	ATC	2.452e^-4	0.621	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7405131	3L_7405131_SNP [dm3] 3L_7412031_SNP [dm6]	G	C	2.453e^-4	0.621	INTERGENIC
2L	2471303	2L_2471303_SNP [dm3] 2L_2471303_SNP [dm6]	T	G	2.454e^-4	0.621	DOWNSTREAM CR45286 INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	9726964	3R_9726964_SNP [dm3] 3R_13901242_SNP [dm6]	A	C	2.471e^-4	0.621	UPSTREAM ems INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10771153	3L_10771153_SNP [dm3] 3L_10778053_SNP [dm6]	T	C	2.472e^-4	0.621	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	4783404	2L_4783404_DEL [dm3] 2L_4783404_DEL [dm6]	ATTT	A	2.473e^-4	0.621	INTRON CG15630
2L	4783413	2L_4783413_DEL [dm3] 2L_4783413_DEL [dm6]	ACCGG	A	2.473e^-4	0.621	INTRON CG15630
3L	12933213	3L_12933213_SNP [dm3] 3L_12940113_SNP [dm6]	A	C	2.486e^-4	0.621	INTERGENIC
3L	1707992	3L_1707992_SNP [dm3] 3L_1707992_SNP [dm6]	A	C	2.486e^-4	0.621	INTRON CG7991
X	4805544	X_4805544_SNP [dm3] X_4911511_SNP [dm6]	A	T	2.488e^-4	0.621	UPSTREAM CG32772 INTRON CG32772	TF binding site BDTNP1_TFBS_dl
2R	7043439	2R_7043439_SNP [dm3] 2R_11155934_SNP [dm6]	G	A	2.488e^-4	0.621	DOWNSTREAM CG13230 INTRON CG13229
X	4387805	X_4387805_SNP [dm3] X_4493772_SNP [dm6]	T	C	2.490e^-4	0.621	INTRON CR32773
3R	13195214	3R_13195214_SNP [dm3] 3R_17369492_SNP [dm6]	C	G	2.497e^-4	0.621	INTERGENIC
3L	17134464	3L_17134464_SNP [dm3] 3L_17141364_SNP [dm6]	A	G	2.498e^-4	0.621	INTRON Rbp6
3R	27635392	3R_27635392_SNP [dm3] 3R_31809670_SNP [dm6]	G	A	2.500e^-4	0.621	SYNONYMOUS_CODING CG11576 DOWNSTREAM FeCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24922588	3R_24922588_SNP [dm3] 3R_29096866_SNP [dm6]	G	T	2.503e^-4	0.621	DOWNSTREAM CR45030 INTRON CG11873
2L	17417281	2L_17417281_SNP [dm3] 2L_17417281_SNP [dm6]	T	C	2.504e^-4	0.621	SYNONYMOUS_CODING Dif INTRON Dif
3R	11586357	3R_11586357_SNP [dm3] 3R_15760635_SNP [dm6]	G	C	2.506e^-4	0.621	INTERGENIC
2R	19710228	2R_19710228_SNP [dm3] 2R_23822705_SNP [dm6]	C	G	2.507e^-4	0.621	DOWNSTREAM CG4763 INTRON CG5549
3R	24447899	3R_24447899_SNP [dm3] 3R_28622177_SNP [dm6]	G	C	2.508e^-4	0.621	INTRON CG10011
X	9851685	X_9851685_SNP [dm3] X_9957652_SNP [dm6]	G	A	2.510e^-4	0.621	INTERGENIC
3R	26022634	3R_26022634_SNP [dm3] 3R_30196912_SNP [dm6]	G	C	2.511e^-4	0.621	SYNONYMOUS_CODING CG9743 UPSTREAM CG15531	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1888075	2L_1888075_SNP [dm3] 2L_1888075_SNP [dm6]	C	A	2.512e^-4	0.621	INTRON CG7337	TF binding site BDTNP1_TFBS_da
X	3190302	X_3190302_SNP [dm3] X_3296269_SNP [dm6]	G	A	2.515e^-4	0.621	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26122174	3R_26122174_SNP [dm3] 3R_30296452_SNP [dm6]	C	T	2.519e^-4	0.621	INTRON hdc
2R	6563673	2R_6563673_SNP [dm3] 2R_10676168_SNP [dm6]	C	G	2.529e^-4	0.621	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11102207	X_11102207_SNP [dm3] X_11208174_SNP [dm6]	A	T	2.532e^-4	0.621	INTERGENIC
3R	26978000	3R_26978000_SNP [dm3] 3R_31152278_SNP [dm6]	A	G	2.534e^-4	0.621	INTRON Gycbeta100B
3L	3730507	3L_3730507_SNP [dm3] 3L_3730507_SNP [dm6]	T	C	2.535e^-4	0.621	INTRON CG32264
2R	14111334	2R_14111334_SNP [dm3] 2R_18223829_SNP [dm6]	G	C	2.538e^-4	0.621	INTERGENIC
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	2.548e^-4	0.621	INTRON trol
3R	15111571	3R_15111571_SNP [dm3] 3R_19285849_SNP [dm6]	G	A	2.556e^-4	0.621	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3024769	X_3024769_SNP [dm3] X_3130736_SNP [dm6]	C	T	2.559e^-4	0.621	SPLICE_SITE_REGION kirre INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9239326	2L_9239326_SNP [dm3] 2L_9239326_SNP [dm6]	T	C	2.563e^-4	0.621	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8860978	2L_8860978_SNP [dm3] 2L_8860978_SNP [dm6]	T	C	2.565e^-4	0.621	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16438323	3R_16438323_SNP [dm3] 3R_20612601_SNP [dm6]	T	C	2.568e^-4	0.621	NON_SYNONYMOUS_CODING CG15923 UTR_3_PRIME CG15923 DOWNSTREAM bon
3R	7165236	3R_7165236_SNP [dm3] 3R_11339514_SNP [dm6]	G	T	2.576e^-4	0.621	INTRON pros	TF binding site BDTNP1_TFBS_dl
2L	7290585	2L_7290585_SNP [dm3] 2L_7290585_SNP [dm6]	G	T	2.580e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17325399	2R_17325399_SNP [dm3] 2R_21437894_SNP [dm6]	C	A	2.581e^-4	0.621	INTRON Sdc
3R	6158781	3R_6158781_SNP [dm3] 3R_10333059_SNP [dm6]	A	G	2.583e^-4	0.621	UPSTREAM sle DOWNSTREAM CG12818 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7008329	3L_7008329_SNP [dm3] 3L_7015229_SNP [dm6]	C	A	2.583e^-4	0.621	UTR_5_PRIME Mp INTRON Mp
X	13002885	X_13002885_SNP [dm3] X_13108852_SNP [dm6]	T	C	2.583e^-4	0.621	UPSTREAM Fer3HCH INTRON CG43313
3L	15932321	3L_15932321_SNP [dm3] 3L_15939221_SNP [dm6]	G	T	2.585e^-4	0.621	INTRON Pka-C3
3L	10540508	3L_10540508_SNP [dm3] 3L_10547408_SNP [dm6]	T	C	2.586e^-4	0.621	INTRON A2bp1
3L	7406833	3L_7406833_SNP [dm3] 3L_7413733_SNP [dm6]	A	T	2.589e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	15810188	2R_15810188_SNP [dm3] 2R_19922683_SNP [dm6]	T	C	2.590e^-4	0.621	INTERGENIC
X	5727407	X_5727407_SNP [dm3] X_5833374_SNP [dm6]	C	T	2.595e^-4	0.621	INTRON CG15765
3L	8551697	3L_8551697_SNP [dm3] 3L_8558597_SNP [dm6]	A	C	2.601e^-4	0.621	UTR_5_PRIME rhea INTRON rhea
3R	22003875	3R_22003875_SNP [dm3] 3R_26178153_SNP [dm6]	G	A	2.607e^-4	0.621	INTRON CG31323
2L	9312798	2L_9312798_SNP [dm3] 2L_9312798_SNP [dm6]	T	G	2.608e^-4	0.621	INTERGENIC
3L	2409971	3L_2409971_SNP [dm3] 3L_2409971_SNP [dm6]	A	T	2.612e^-4	0.621	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	3191300	X_3191300_SNP [dm3] X_3297267_SNP [dm6]	T	A	2.612e^-4	0.621	INTRON dnc
3L	6696374	3L_6696374_SNP [dm3] 3L_6703274_SNP [dm6]	A	G	2.614e^-4	0.621	UTR_5_PRIME SP1173 INTRON SP1173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24994424	3R_24994424_SNP [dm3] 3R_29168702_SNP [dm6]	C	T	2.627e^-4	0.622	INTRON CG11898
3L	13198541	3L_13198541_SNP [dm3] 3L_13205441_SNP [dm6]	G	A	2.627e^-4	0.622	INTERGENIC
3R	24207829	3R_24207829_SNP [dm3] 3R_28382107_SNP [dm6]	A	T	2.631e^-4	0.622	INTERGENIC
2L	8169316	2L_8169316_SNP [dm3] 2L_8169316_SNP [dm6]	T	C	2.632e^-4	0.622	INTRON Piezo
2R	18813709	2R_18813709_SNP [dm3] 2R_22926186_SNP [dm6]	C	T	2.634e^-4	0.622	UPSTREAM CG42678 INTRON CG42678	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12175072	X_12175072_SNP [dm3] X_12281039_SNP [dm6]	C	A	2.638e^-4	0.622	INTRON Ten-a
3R	10315503	3R_10315503_SNP [dm3] 3R_14489781_SNP [dm6]	G	A	2.639e^-4	0.622	INTERGENIC
2R	4942541	2R_4942541_SNP [dm3] 2R_9055036_SNP [dm6]	C	G	2.657e^-4	0.624	INTRON CG13743	TF binding site BDTNP1_TFBS_twi
3R	24884941	3R_24884941_SNP [dm3] 3R_29059219_SNP [dm6]	T	A	2.658e^-4	0.624	DOWNSTREAM Cul5 & 1 other INTERGENIC
3L	4521456	3L_4521456_SNP [dm3] 3L_4521456_SNP [dm6]	T	G	2.662e^-4	0.624	INTRON Tie
3R	25467082	3R_25467082_SNP [dm3] 3R_29641360_SNP [dm6]	G	A	2.663e^-4	0.624	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16279154	3L_16279154_SNP [dm3] 3L_16286054_SNP [dm6]	C	G	2.678e^-4	0.626	UPSTREAM CG13047 INTERGENIC
3R	9859206	3R_9859206_SNP [dm3] 3R_14033484_SNP [dm6]	G	A	2.679e^-4	0.626	INTRON CG3061	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26318981	3R_26318981_SNP [dm3] 3R_30493259_SNP [dm6]	A	G	2.679e^-4	0.626	SPLICE_SITE_REGION PH4alphaMP SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad
X	13265761	X_13265761_SNP [dm3] X_13371728_SNP [dm6]	C	T	2.690e^-4	0.627	INTRON CG1640	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18132024	3L_18132024_SNP [dm3] 3L_18138924_SNP [dm6]	T	G	2.692e^-4	0.627	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13958095	3R_13958095_SNP [dm3] 3R_18132373_SNP [dm6]	A	G	2.695e^-4	0.627	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6574904	3L_6574904_SNP [dm3] 3L_6581804_SNP [dm6]	T	C	2.696e^-4	0.627	INTRON CG18769 & 1 other
2L	9128098	2L_9128098_SNP [dm3] 2L_9128098_SNP [dm6]	A	C	2.705e^-4	0.627	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3800564	3L_3800564_SNP [dm3] 3L_3800564_SNP [dm6]	A	G	2.711e^-4	0.627	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15277768	2R_15277768_SNP [dm3] 2R_19390263_SNP [dm6]	G	T	2.712e^-4	0.627	NON_SYNONYMOUS_CODING CG11257 DOWNSTREAM CG10081	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3913269	2L_3913269_SNP [dm3] 2L_3913269_SNP [dm6]	T	C	2.714e^-4	0.627	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15810378	2R_15810378_SNP [dm3] 2R_19922873_SNP [dm6]	T	G	2.714e^-4	0.627	INTERGENIC
2L	14977175	2L_14977175_SNP [dm3] 2L_14977175_SNP [dm6]	T	C	2.718e^-4	0.627	INTRON mol
3R	26611826	3R_26611826_SNP [dm3] 3R_30786104_SNP [dm6]	C	A	2.732e^-4	0.629	SYNONYMOUS_CODING zfh1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5818697	3L_5818697_SNP [dm3] 3L_5825597_SNP [dm6]	G	A	2.737e^-4	0.63	INTRON vn
2R	9090987	2R_9090987_SNP [dm3] 2R_13203482_SNP [dm6]	T	C	2.739e^-4	0.63	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	2.746e^-4	0.63	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4360984	X_4360984_SNP [dm3] X_4466951_SNP [dm6]	A	G	2.752e^-4	0.631	INTRON bi & 1 other
3R	26268189	3R_26268189_SNP [dm3] 3R_30442467_SNP [dm6]	G	A	2.755e^-4	0.631	INTRON CG15537
3R	9714394	3R_9714394_SNP [dm3] 3R_13888672_SNP [dm6]	T	C	2.758e^-4	0.631	INTERGENIC
3L	290607	3L_290607_SNP [dm3] 3L_290607_SNP [dm6]	T	G	2.769e^-4	0.632	INTRON RhoGEF3
2R	7043549	2R_7043549_SNP [dm3] 2R_11156044_SNP [dm6]	G	A	2.769e^-4	0.632	DOWNSTREAM CG13230 INTRON CG13229
2R	19917456	2R_19917456_SNP [dm3] 2R_24029933_SNP [dm6]	G	A	2.774e^-4	0.632	NON_SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	18140986	3L_18140986_DEL [dm3] 3L_18147886_DEL [dm6]	AAACTA	A	2.777e^-4	0.632	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3915792	2L_3915792_INS [dm3] 2L_3915792_INS [dm6]	A	AA	2.790e^-4	0.633	INTRON fred
3R	13004011	3R_13004011_SNP [dm3] 3R_17178289_SNP [dm6]	G	C	2.794e^-4	0.633	INTRON Mur89F
3L	16318387	3L_16318387_SNP [dm3] 3L_16325287_SNP [dm6]	C	T	2.800e^-4	0.633	SYNONYMOUS_CODING CG13040 DOWNSTREAM CG13059 & 1 other
2R	12037970	2R_12037970_SNP [dm3] 2R_16150465_SNP [dm6]	G	T	2.804e^-4	0.633	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4783419	2L_4783419_SNP [dm3] 2L_4783419_SNP [dm6]	C	T	2.808e^-4	0.633	INTRON CG15630
3R	13195221	3R_13195221_DEL [dm3] 3R_17369499_DEL [dm6]	ATGAAGTTTTTCTCATGCTT...	A	2.808e^-4	0.633	INTERGENIC
3R	21716055	3R_21716055_SNP [dm3] 3R_25890333_SNP [dm6]	G	C	2.811e^-4	0.633	INTRON Lnk
X	12378807	X_12378807_SNP [dm3] X_12484774_SNP [dm6]	C	A	2.812e^-4	0.633	INTERGENIC
3L	19872325	3L_19872325_SNP [dm3] 3L_19879225_SNP [dm6]	C	T	2.816e^-4	0.633	SYNONYMOUS_CODING CG8334	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6591911	3L_6591911_SNP [dm3] 3L_6598811_SNP [dm6]	A	T	2.817e^-4	0.633	SYNONYMOUS_CODING ndl
3L	767137	3L_767137_SNP [dm3] 3L_767137_SNP [dm6]	C	T	2.818e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	9697159	3R_9697159_SNP [dm3] 3R_13871437_SNP [dm6]	A	G	2.827e^-4	0.634	INTRON E5
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	2.836e^-4	0.635	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13025853	3R_13025853_SNP [dm3] 3R_17200131_SNP [dm6]	A	T	2.841e^-4	0.635	INTRON Mur89F
2L	3921878	2L_3921878_SNP [dm3] 2L_3921878_SNP [dm6]	A	G	2.841e^-4	0.635	INTRON fred
3R	23650368	3R_23650368_INS [dm3] 3R_27824646_INS [dm6]	G	GAGTATAAA	2.851e^-4	0.635	INTRON CG34353
X	7132798	X_7132798_SNP [dm3] X_7238765_SNP [dm6]	T	C	2.855e^-4	0.635	SYNONYMOUS_CODING CG9650 INTRON CR44357	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16158454	2R_16158454_SNP [dm3] 2R_20270949_SNP [dm6]	C	G	2.858e^-4	0.635	UTR_3_PRIME CG8908 DOWNSTREAM CG10444
3R	12997373	3R_12997373_SNP [dm3] 3R_17171651_SNP [dm6]	C	A	2.860e^-4	0.635	INTRON Mur89F
X	8426566	X_8426566_INS [dm3] X_8532533_INS [dm6]	T	TAGAT	2.865e^-4	0.635	INTRON Nrg
2R	13561574	2R_13561574_SNP [dm3] 2R_17674069_SNP [dm6]	A	G	2.866e^-4	0.635	UTR_3_PRIME Sema-1b
3R	10821426	3R_10821426_SNP [dm3] 3R_14995704_SNP [dm6]	C	A	2.869e^-4	0.635	INTERGENIC
X	2817978	X_2817978_SNP [dm3] X_2923945_SNP [dm6]	C	A	2.879e^-4	0.635	SYNONYMOUS_CODING CG3588 UTR_3_PRIME CG3588 DOWNSTREAM CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
3R	13002886	3R_13002886_SNP [dm3] 3R_17177164_SNP [dm6]	C	T	2.882e^-4	0.635	INTRON Mur89F
3R	23971028	3R_23971028_DEL [dm3] 3R_28145306_DEL [dm6]	CTTTGG	C	2.888e^-4	0.635	INTERGENIC
2R	14565441	2R_14565441_SNP [dm3] 2R_18677936_SNP [dm6]	G	A	2.889e^-4	0.635	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	20162751	3L_20162751_SNP [dm3] 3L_20169651_SNP [dm6]	G	A	2.889e^-4	0.635	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	974857	3L_974857_SNP [dm3] 3L_974857_SNP [dm6]	A	G	2.890e^-4	0.635	UTR_3_PRIME Glut1 INTRON Glut1
3R	26978008	3R_26978008_SNP [dm3] 3R_31152286_SNP [dm6]	T	C	2.895e^-4	0.635	INTRON Gycbeta100B
2L	3832919	2L_3832919_SNP [dm3] 2L_3832919_SNP [dm6]	C	A	2.908e^-4	0.635	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	25001338	3R_25001338_SNP [dm3] 3R_29175616_SNP [dm6]	G	T	2.910e^-4	0.635	INTRON CG14509
2R	18037948	2R_18037948_SNP [dm3] 2R_22150443_SNP [dm6]	A	C	2.913e^-4	0.635	INTRON a
X	17820954	X_17820954_SNP [dm3] X_17926921_SNP [dm6]	T	G	2.913e^-4	0.635	UTR_3_PRIME Sh
3R	12978719	3R_12978719_SNP [dm3] 3R_17152997_SNP [dm6]	T	G	2.914e^-4	0.635	UTR_3_PRIME CG5292 & 1 other
X	3190257	X_3190257_SNP [dm3] X_3296224_SNP [dm6]	A	T	2.915e^-4	0.635	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8897700	2R_8897700_SNP [dm3] 2R_13010195_SNP [dm6]	T	C	2.918e^-4	0.635	INTERGENIC
X	10107875	X_10107875_SNP [dm3] X_10213842_SNP [dm6]	C	T	2.919e^-4	0.635	INTRON l_1_G0230	TF binding site mE1_TFBS_sens
3R	24515451	3R_24515451_SNP [dm3] 3R_28689729_SNP [dm6]	T	A	2.919e^-4	0.635	INTRON CG9990
3L	7405064	3L_7405064_INS [dm3] 3L_7411964_INS [dm6]	G	AT	2.922e^-4	0.635	INTERGENIC
3R	13009500	3R_13009500_DEL [dm3] 3R_17183778_DEL [dm6]	TC	T	2.924e^-4	0.635	INTRON Mur89F
3R	11760745	3R_11760745_SNP [dm3] 3R_15935023_SNP [dm6]	T	G	2.936e^-4	0.635	UPSTREAM Sap47 DOWNSTREAM blp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13195264	3R_13195264_DEL [dm3] 3R_17369542_DEL [dm6]	CTAAAGTTTG	C	2.940e^-4	0.635	INTERGENIC
3L	4107738	3L_4107738_SNP [dm3] 3L_4107738_SNP [dm6]	C	A	2.941e^-4	0.635	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19183208	2R_19183208_SNP [dm3] 2R_23295685_SNP [dm6]	G	A	2.943e^-4	0.635	INTERGENIC
3R	10301439	3R_10301439_DEL [dm3] 3R_14475717_DEL [dm6]	GT	G	2.944e^-4	0.635	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22251086	X_22251086_SNP [dm3] X_22849250_SNP [dm6]	C	A	2.951e^-4	0.635	INTRON fog & 1 other
3R	13023838	3R_13023838_SNP [dm3] 3R_17198116_SNP [dm6]	C	G	2.954e^-4	0.635	INTRON Mur89F
2L	567486	2L_567486_SNP [dm3] 2L_567486_SNP [dm6]	A	G	2.954e^-4	0.635	SYNONYMOUS_CODING Nle UPSTREAM CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13489704	3L_13489704_SNP [dm3] 3L_13496604_SNP [dm6]	T	A	2.957e^-4	0.635	INTRON Tgi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6853735	2R_6853735_SNP [dm3] 2R_10966230_SNP [dm6]	A	C	2.963e^-4	0.636	INTERGENIC
X	22152854	X_22152854_SNP [dm3] X_22751018_SNP [dm6]	C	T	2.965e^-4	0.636	INTRON CR44997
3L	3551215	3L_3551215_SNP [dm3] 3L_3551215_SNP [dm6]	A	G	2.970e^-4	0.636	INTRON Eip63E
3R	18945483	3R_18945483_SNP [dm3] 3R_23119761_SNP [dm6]	T	A	2.974e^-4	0.636	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl
3R	14681095	3R_14681095_SNP [dm3] 3R_18855373_SNP [dm6]	T	A	2.978e^-4	0.636	INTERGENIC
3R	12998784	3R_12998784_SNP [dm3] 3R_17173062_SNP [dm6]	A	C	2.983e^-4	0.636	INTRON Mur89F
3R	26278311	3R_26278311_SNP [dm3] 3R_30452589_SNP [dm6]	T	C	2.984e^-4	0.636	INTRON aralar1
3R	14223846	3R_14223846_DEL [dm3] 3R_18398124_DEL [dm6]	GG	T	2.986e^-4	0.636	INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	3824549	2L_3824549_SNP [dm3] 2L_3824549_SNP [dm6]	A	T	2.990e^-4	0.636	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	19833679	3R_19833679_SNP [dm3] 3R_24007957_SNP [dm6]	T	A	2.996e^-4	0.636	INTRON KrT95D
2R	19129339	2R_19129339_SNP [dm3] 2R_23241816_SNP [dm6]	T	C	2.997e^-4	0.636	INTERGENIC
2L	8411016	2L_8411016_SNP [dm3] 2L_8411016_SNP [dm6]	G	A	3.000e^-4	0.636	SYNONYMOUS_CODING CG13397
3R	6157321	3R_6157321_SNP [dm3] 3R_10331599_SNP [dm6]	G	T	3.003e^-4	0.636	UTR_5_PRIME CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	9708639	3R_9708639_SNP [dm3] 3R_13882917_SNP [dm6]	G	A	3.010e^-4	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6297829	X_6297829_SNP [dm3] X_6403796_SNP [dm6]	A	G	3.016e^-4	0.637	INTERGENIC
3R	21649071	3R_21649071_SNP [dm3] 3R_25823349_SNP [dm6]	A	G	3.018e^-4	0.637	DOWNSTREAM CR44949 INTERGENIC
X	3190350	X_3190350_SNP [dm3] X_3296317_SNP [dm6]	A	G	3.025e^-4	0.637	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16251799	2R_16251799_SNP [dm3] 2R_20364294_SNP [dm6]	A	G	3.027e^-4	0.637	INTERGENIC
X	2369424	X_2369424_SNP [dm3] X_2475391_SNP [dm6]	A	C	3.033e^-4	0.637	DOWNSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3R	19833691	3R_19833691_SNP [dm3] 3R_24007969_SNP [dm6]	A	T	3.036e^-4	0.637	INTRON KrT95D
2L	11787544	2L_11787544_SNP [dm3] 2L_11787544_SNP [dm6]	A	G	3.042e^-4	0.637	UPSTREAM CG14931 INTERGENIC
X	20010682	X_20010682_SNP [dm3] X_20116649_SNP [dm6]	A	G	3.046e^-4	0.637	INTERGENIC
2R	19855481	2R_19855481_SNP [dm3] 2R_23967958_SNP [dm6]	A	G	3.047e^-4	0.637	UTR_5_PRIME or UPSTREAM CG34213 DOWNSTREAM CG10904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26120346	3R_26120346_SNP [dm3] 3R_30294624_SNP [dm6]	G	A	3.048e^-4	0.637	INTRON hdc
3R	26110445	3R_26110445_SNP [dm3] 3R_30284723_SNP [dm6]	G	C	3.052e^-4	0.637	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	7578043	X_7578043_SNP [dm3] X_7684010_SNP [dm6]	T	C	3.055e^-4	0.637	UTR_3_PRIME CHES-1-like DOWNSTREAM CHES-1-like
3R	23476266	3R_23476266_SNP [dm3] 3R_27650544_SNP [dm6]	T	G	3.059e^-4	0.637	DOWNSTREAM tau INTRON tau
3R	3814262	3R_3814262_SNP [dm3] 3R_7988540_SNP [dm6]	T	A	3.061e^-4	0.637	INTRON CG2781
2L	4799591	2L_4799591_SNP [dm3] 2L_4799591_SNP [dm6]	A	C	3.067e^-4	0.637	INTRON Clect27	TF binding site mE1_TFBS_cad
2L	5567221	2L_5567221_SNP [dm3] 2L_5567221_SNP [dm6]	T	A	3.069e^-4	0.637	INTERGENIC
3R	19783733	3R_19783733_SNP [dm3] 3R_23958011_SNP [dm6]	C	A	3.070e^-4	0.637	SYNONYMOUS_CODING Aats-glupro UPSTREAM AP-1sigma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11919961	3L_11919961_SNP [dm3] 3L_11926861_SNP [dm6]	A	C	3.075e^-4	0.637	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17050187	2L_17050187_SNP [dm3] 2L_17050187_SNP [dm6]	C	T	3.082e^-4	0.637	INTERGENIC
3L	6959341	3L_6959341_SNP [dm3] 3L_6966241_SNP [dm6]	T	C	3.083e^-4	0.637	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3659727	2L_3659727_SNP [dm3] 2L_3659727_SNP [dm6]	A	G	3.088e^-4	0.637	INTERGENIC
2L	9309052	2L_9309052_SNP [dm3] 2L_9309052_SNP [dm6]	T	C	3.088e^-4	0.637	INTERGENIC
3R	10006234	3R_10006234_SNP [dm3] 3R_14180512_SNP [dm6]	G	T	3.090e^-4	0.637	INTRON Dop1R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8357054	3R_8357054_SNP [dm3] 3R_12531332_SNP [dm6]	A	T	3.093e^-4	0.637	INTRON Octbeta3R
2L	4301491	2L_4301491_SNP [dm3] 2L_4301491_SNP [dm6]	G	A	3.096e^-4	0.637	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11318463	3L_11318463_SNP [dm3] 3L_11325363_SNP [dm6]	T	C	3.102e^-4	0.637	UPSTREAM CR44723 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12986990	3R_12986990_SNP [dm3] 3R_17161268_SNP [dm6]	G	C	3.107e^-4	0.637	INTRON Mur89F
2L	1888116	2L_1888116_SNP [dm3] 2L_1888116_SNP [dm6]	G	T	3.107e^-4	0.637	INTRON CG7337	TF binding site BDTNP1_TFBS_da
3L	6491784	3L_6491784_SNP [dm3] 3L_6498684_SNP [dm6]	T	A	3.120e^-4	0.639	INTRON sfl	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
2L	1888106	2L_1888106_SNP [dm3] 2L_1888106_SNP [dm6]	G	A	3.131e^-4	0.64	INTRON CG7337	TF binding site BDTNP1_TFBS_da
3R	26469513	3R_26469513_SNP [dm3] 3R_30643791_SNP [dm6]	T	C	3.131e^-4	0.64	UTR_3_PRIME CG31013
3R	13195204	3R_13195204_SNP [dm3] 3R_17369482_SNP [dm6]	G	A	3.141e^-4	0.64	INTERGENIC
3R	12385221	3R_12385221_SNP [dm3] 3R_16559499_SNP [dm6]	G	A	3.150e^-4	0.64	INTRON CG42342
3L	6953676	3L_6953676_SNP [dm3] 3L_6960576_SNP [dm6]	A	T	3.155e^-4	0.64	SYNONYMOUS_CODING sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13077099	3L_13077099_SNP [dm3] 3L_13083999_SNP [dm6]	G	C	3.158e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25463575	3R_25463575_DEL [dm3] 3R_29637853_DEL [dm6]	TT	T	3.159e^-4	0.64	INTRON Dop1R2
3L	1346729	3L_1346729_SNP [dm3] 3L_1346729_SNP [dm6]	A	T	3.160e^-4	0.64	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
X	14796006	X_14796006_SNP [dm3] X_14901973_SNP [dm6]	A	C	3.160e^-4	0.64	UTR_3_PRIME CG9512 INTRON Flo2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11601057	3R_11601057_SNP [dm3] 3R_15775335_SNP [dm6]	A	T	3.164e^-4	0.64	UPSTREAM CR45206 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18008972	2R_18008972_SNP [dm3] 2R_22121467_SNP [dm6]	C	A	3.168e^-4	0.64	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15166870	3R_15166870_SNP [dm3] 3R_19341148_SNP [dm6]	T	C	3.170e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3153676	X_3153676_SNP [dm3] X_3259643_SNP [dm6]	A	G	3.171e^-4	0.64	INTRON dnc
X	19599758	X_19599758_SNP [dm3] X_19705725_SNP [dm6]	G	A	3.175e^-4	0.64	SYNONYMOUS_CODING CG14230 DOWNSTREAM meso18E	TF binding site mE1_TFBS_cad
3R	10698410	3R_10698410_SNP [dm3] 3R_14872688_SNP [dm6]	G	C	3.179e^-4	0.64	INTRON btsz
3L	298134	3L_298134_SNP [dm3] 3L_298134_SNP [dm6]	A	G	3.182e^-4	0.64	SYNONYMOUS_CODING RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	21646404	3R_21646404_SNP [dm3] 3R_25820682_SNP [dm6]	G	A	3.194e^-4	0.641	INTERGENIC
3L	6959377	3L_6959377_SNP [dm3] 3L_6966277_SNP [dm6]	A	T	3.196e^-4	0.641	INTRON CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24976041	3R_24976041_SNP [dm3] 3R_29150319_SNP [dm6]	A	G	3.197e^-4	0.641	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo
3R	24362526	3R_24362526_SNP [dm3] 3R_28536804_SNP [dm6]	A	T	3.211e^-4	0.643	INTRON Ppn
2R	17444727	2R_17444727_SNP [dm3] 2R_21557222_SNP [dm6]	T	C	3.216e^-4	0.643	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12661220	3L_12661220_DEL [dm3] 3L_12668120_DEL [dm6]	TGATGGCACTATTAGCATTT...	T	3.219e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9944472	X_9944472_INS [dm3] X_10050439_INS [dm6]	A	ACA	3.224e^-4	0.643	UTR_3_PRIME Cht6 DOWNSTREAM Yp2
2L	7252564	2L_7252564_SNP [dm3] 2L_7252564_SNP [dm6]	C	T	3.225e^-4	0.643	NON_SYNONYMOUS_CODING CG13786
3L	11208618	3L_11208618_SNP [dm3] 3L_11215518_SNP [dm6]	T	G	3.233e^-4	0.643	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	7962731	3L_7962731_DEL [dm3] 3L_7969631_DEL [dm6]	CC	C	3.240e^-4	0.643	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25234379	3R_25234379_SNP [dm3] 3R_29408657_SNP [dm6]	G	A	3.241e^-4	0.643	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3L	16273003	3L_16273003_SNP [dm3] 3L_16279903_SNP [dm6]	G	T	3.243e^-4	0.643	UPSTREAM CG13050 & 1 other INTERGENIC
3R	13023784	3R_13023784_SNP [dm3] 3R_17198062_SNP [dm6]	C	T	3.249e^-4	0.643	INTRON Mur89F
X	17319919	X_17319919_SNP [dm3] X_17425886_SNP [dm6]	T	G	3.251e^-4	0.643	UPSTREAM CG5613 INTRON CG12994 & 1 other
2L	15017484	2L_15017484_SNP [dm3] 2L_15017484_SNP [dm6]	T	C	3.253e^-4	0.643	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl
3R	25729398	3R_25729398_SNP [dm3] 3R_29903676_SNP [dm6]	T	A	3.255e^-4	0.643	SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
3L	6574923	3L_6574923_SNP [dm3] 3L_6581823_SNP [dm6]	T	A	3.260e^-4	0.643	INTRON CG18769 & 1 other
2R	17322809	2R_17322809_SNP [dm3] 2R_21435304_SNP [dm6]	A	G	3.263e^-4	0.643	INTRON Sdc
3R	19038364	3R_19038364_SNP [dm3] 3R_23212642_SNP [dm6]	G	A	3.263e^-4	0.643	INTRON cnc	TF binding site BDTNP1_TFBS_slp1
2R	15277901	2R_15277901_SNP [dm3] 2R_19390396_SNP [dm6]	G	C	3.266e^-4	0.643	SYNONYMOUS_CODING CG11257	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11762651	3R_11762651_SNP [dm3] 3R_15936929_SNP [dm6]	G	C	3.271e^-4	0.643	INTRON Sap47
3R	25365391	3R_25365391_SNP [dm3] 3R_29539669_SNP [dm6]	A	T	3.281e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11788721	3R_11788721_SNP [dm3] 3R_15962999_SNP [dm6]	G	A	3.286e^-4	0.643	NON_SYNONYMOUS_CODING CG4287 UPSTREAM CG5516 DOWNSTREAM Sap47	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	4047059	3R_4047059_SNP [dm3] 3R_8221337_SNP [dm6]	A	G	3.290e^-4	0.643	SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_sens
3L	6697549	3L_6697549_SNP [dm3] 3L_6704449_SNP [dm6]	G	A	3.291e^-4	0.643	UPSTREAM SP1173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10727466	3L_10727466_SNP [dm3] 3L_10734366_SNP [dm6]	G	A	3.293e^-4	0.643	INTERGENIC
3R	8083272	3R_8083272_SNP [dm3] 3R_12257550_SNP [dm6]	C	T	3.296e^-4	0.643	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6089893	X_6089893_SNP [dm3] X_6195860_SNP [dm6]	G	T	3.296e^-4	0.643	SYNONYMOUS_CODING CG32750 DOWNSTREAM CG32751
3R	24447911	3R_24447911_SNP [dm3] 3R_28622189_SNP [dm6]	A	G	3.300e^-4	0.643	INTRON CG10011
3L	19396820	3L_19396820_SNP [dm3] 3L_19403720_SNP [dm6]	C	A	3.301e^-4	0.643	INTRON CG32206
3R	11585163	3R_11585163_SNP [dm3] 3R_15759441_SNP [dm6]	C	T	3.301e^-4	0.643	INTERGENIC
3R	6155245	3R_6155245_SNP [dm3] 3R_10329523_SNP [dm6]	A	G	3.307e^-4	0.643	SYNONYMOUS_CODING Bruce
X	22251081	X_22251081_SNP [dm3] X_22849245_SNP [dm6]	A	G	3.313e^-4	0.643	INTRON fog & 1 other
2R	14732552	2R_14732552_SNP [dm3] 2R_18845047_SNP [dm6]	C	A	3.315e^-4	0.643	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16418533	3L_16418533_SNP [dm3] 3L_16425433_SNP [dm6]	G	A	3.316e^-4	0.643	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	4708201	2L_4708201_SNP [dm3] 2L_4708201_SNP [dm6]	C	T	3.319e^-4	0.643	INTRON CG34351
2L	9299124	2L_9299124_SNP [dm3] 2L_9299124_SNP [dm6]	A	C	3.329e^-4	0.644	UTR_3_PRIME Ggamma30A
2L	17005713	2L_17005713_DEL [dm3] 2L_17005713_DEL [dm6]	AT	G	3.344e^-4	0.644	INTERGENIC
X	10212145	X_10212145_SNP [dm3] X_10318112_SNP [dm6]	G	A	3.351e^-4	0.644	INTRON alpha-Man-I
X	17732879	X_17732879_SNP [dm3] X_17838846_SNP [dm6]	G	A	3.353e^-4	0.644	INTRON CG6398
2L	14977147	2L_14977147_SNP [dm3] 2L_14977147_SNP [dm6]	T	A	3.354e^-4	0.644	INTRON mol
2L	9239774	2L_9239774_SNP [dm3] 2L_9239774_SNP [dm6]	G	A	3.355e^-4	0.644	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5540481	2L_5540481_SNP [dm3] 2L_5540481_SNP [dm6]	T	C	3.357e^-4	0.644	UTR_3_PRIME Hel25E INTRON Hel25E	TF binding site mE1_TFBS_sens
X	17319749	X_17319749_SNP [dm3] X_17425716_SNP [dm6]	T	C	3.358e^-4	0.644	UPSTREAM CG5613 INTRON CG12994 & 1 other
X	18982148	X_18982148_SNP [dm3] X_19088115_SNP [dm6]	C	T	3.359e^-4	0.644	INTERGENIC
3R	14874237	3R_14874237_SNP [dm3] 3R_19048515_SNP [dm6]	A	T	3.361e^-4	0.644	SYNONYMOUS_CODING cdi	TF binding site mE1_TFBS_chinmo
3R	13000247	3R_13000247_SNP [dm3] 3R_17174525_SNP [dm6]	A	T	3.363e^-4	0.644	INTRON Mur89F
3L	5818746	3L_5818746_SNP [dm3] 3L_5825646_SNP [dm6]	A	C	3.368e^-4	0.644	INTRON vn
3R	10358285	3R_10358285_SNP [dm3] 3R_14532563_SNP [dm6]	G	A	3.371e^-4	0.644	INTRON Pde6
3R	9722279	3R_9722279_SNP [dm3] 3R_13896557_SNP [dm6]	C	A	3.373e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	12509967	3L_12509967_SNP [dm3] 3L_12516867_SNP [dm6]	G	A	3.382e^-4	0.645	NON_SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_chinmo
2R	18241673	2R_18241673_SNP [dm3] 2R_22354168_SNP [dm6]	G	T	3.387e^-4	0.646	INTRON Liprin-gamma
3R	13015328	3R_13015328_SNP [dm3] 3R_17189606_SNP [dm6]	T	C	3.397e^-4	0.646	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12999211	3R_12999211_SNP [dm3] 3R_17173489_SNP [dm6]	A	G	3.398e^-4	0.646	INTRON Mur89F
2L	4097689	2L_4097689_SNP [dm3] 2L_4097689_SNP [dm6]	T	C	3.411e^-4	0.646	INTRON ed	TF binding site mE1_TFBS_cad
3R	10013132	3R_10013132_SNP [dm3] 3R_14187410_SNP [dm6]	C	T	3.414e^-4	0.646	INTRON Dop1R1
X	7778175	X_7778175_SNP [dm3] X_7884142_SNP [dm6]	G	A	3.417e^-4	0.646	UPSTREAM Ir7g & 1 other INTERGENIC
3R	10295948	3R_10295948_SNP [dm3] 3R_14470226_SNP [dm6]	T	A	3.418e^-4	0.646	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2669416	2L_2669416_SNP [dm3] 2L_2669416_SNP [dm6]	T	C	3.422e^-4	0.646	UPSTREAM Gr23a INTERGENIC
3L	2651116	3L_2651116_SNP [dm3] 3L_2651116_SNP [dm6]	G	A	3.422e^-4	0.646	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro UPSTREAM Snup & 1 other DOWNSTREAM CG1246	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	2868112	3R_2868112_SNP [dm3] 3R_7042390_SNP [dm6]	C	A	3.425e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	18131766	3L_18131766_SNP [dm3] 3L_18138666_SNP [dm6]	G	A	3.427e^-4	0.646	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12712522	3L_12712522_SNP [dm3] 3L_12719422_SNP [dm6]	A	G	3.435e^-4	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13015165	3R_13015165_SNP [dm3] 3R_17189443_SNP [dm6]	T	C	3.437e^-4	0.646	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16730526	3R_16730526_SNP [dm3] 3R_20904804_SNP [dm6]	T	G	3.440e^-4	0.646	DOWNSTREAM TotX INTRON CG5621
3R	24913524	3R_24913524_DEL [dm3] 3R_29087802_DEL [dm6]	AAA	A	3.444e^-4	0.646	UPSTREAM CG11873 INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3921879	2L_3921879_SNP [dm3] 2L_3921879_SNP [dm6]	G	A	3.445e^-4	0.646	INTRON fred
2R	9769800	2R_9769800_SNP [dm3] 2R_13882295_SNP [dm6]	G	A	3.448e^-4	0.646	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.806e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2310 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13958095	3R_13958095_SNP [dm3] 3R_18132373_SNP [dm6]	A	G	7.960e^-7	0.45	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20397786	X_20397786_SNP [dm3] X_20526759_SNP [dm6]	T	C	9.405e^-7	0.45	UPSTREAM CG42579 INTERGENIC
3R	5478605	3R_5478605_SNP [dm3] 3R_9652883_SNP [dm6]	A	C	1.084e^-6	0.45	SYNONYMOUS_CODING CG43441 INTRON CG9492
3L	20023565	3L_20023565_SNP [dm3] 3L_20030465_SNP [dm6]	T	C	1.720e^-6	0.45	INTERGENIC
3L	7629387	3L_7629387_SNP [dm3] 3L_7636287_SNP [dm6]	G	A	1.869e^-6	0.45	SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1879241	2R_1879241_SNP [dm3] 2R_5991736_SNP [dm6]	T	C	1.901e^-6	0.45	INTRON Src42A
3R	22746543	3R_22746543_SNP [dm3] 3R_26920821_SNP [dm6]	T	C	2.069e^-6	0.45	INTRON sda
X	6334526	X_6334526_SNP [dm3] X_6440493_SNP [dm6]	C	T	2.101e^-6	0.45	INTRON CG42340
X	6387069	X_6387069_SNP [dm3] X_6493036_SNP [dm6]	T	A	2.159e^-6	0.45	INTRON CG42340
2R	8649956	2R_8649956_SNP [dm3] 2R_12762451_SNP [dm6]	C	T	3.234e^-6	0.607	SYNONYMOUS_CODING CG12374	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13489463	3L_13489463_SNP [dm3] 3L_13496363_SNP [dm6]	T	C	3.678e^-6	0.627	INTRON Tgi
3L	22112954	3L_22112954_SNP [dm3] 3L_22119854_SNP [dm6]	G	T	4.129e^-6	0.645	INTERGENIC
2R	6449211	2R_6449211_SNP [dm3] 2R_10561706_SNP [dm6]	T	A	4.969e^-6	0.662	UTR_5_PRIME psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24991747	3R_24991747_SNP [dm3] 3R_29166025_SNP [dm6]	C	T	5.043e^-6	0.662	INTRON CG11898
3L	16269897	3L_16269897_SNP [dm3] 3L_16276797_SNP [dm6]	A	C	5.581e^-6	0.662	UPSTREAM CG13065 INTERGENIC
3L	16267562	3L_16267562_MNP [dm3] 3L_16274462_MNP [dm6]	TTAT	CATC	6.537e^-6	0.662	DOWNSTREAM CG13066 INTERGENIC
3L	5737017	3L_5737017_SNP [dm3] 3L_5743917_SNP [dm6]	A	T	6.853e^-6	0.662	UTR_3_PRIME sif INTRON sif
3L	4781123	3L_4781123_SNP [dm3] 3L_4781123_SNP [dm6]	T	C	6.894e^-6	0.662	INTRON RhoGEF64C
2R	19330882	2R_19330882_SNP [dm3] 2R_23443359_SNP [dm6]	C	T	7.203e^-6	0.662	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5444734	2R_5444734_SNP [dm3] 2R_9557229_SNP [dm6]	A	T	7.425e^-6	0.662	INTERGENIC
2R	19330883	2R_19330883_SNP [dm3] 2R_23443360_SNP [dm6]	A	C	7.615e^-6	0.662	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5079375	3R_5079375_SNP [dm3] 3R_9253653_SNP [dm6]	A	T	7.770e^-6	0.662	DOWNSTREAM St2 EXON CR16735
3L	16267567	3L_16267567_INS [dm3] 3L_16274467_INS [dm6]	G	CGCCCA	8.609e^-6	0.699	DOWNSTREAM CG13066 INTERGENIC
3L	4780955	3L_4780955_SNP [dm3] 3L_4780955_SNP [dm6]	T	C	8.940e^-6	0.699	INTRON RhoGEF64C
3R	11231015	3R_11231015_SNP [dm3] 3R_15405293_SNP [dm6]	C	G	1.009e^-5	0.754	NON_SYNONYMOUS_CODING CG6125
X	21083148	X_21083148_SNP [dm3] X_21212121_SNP [dm6]	G	T	1.071e^-5	0.754	INTRON CG32521
X	6334543	X_6334543_SNP [dm3] X_6440510_SNP [dm6]	C	T	1.085e^-5	0.754	INTRON CG42340
X	21083163	X_21083163_SNP [dm3] X_21212136_SNP [dm6]	G	A	1.214e^-5	0.778	INTRON CG32521
3R	22746544	3R_22746544_SNP [dm3] 3R_26920822_SNP [dm6]	A	C	1.270e^-5	0.778	INTRON sda
2R	15297293	2R_15297293_SNP [dm3] 2R_19409788_SNP [dm6]	T	A	1.388e^-5	0.778	INTRON hts
3L	18478116	3L_18478116_SNP [dm3] 3L_18485016_SNP [dm6]	G	A	1.388e^-5	0.778	DOWNSTREAM AstC-R2 INTERGENIC	TF binding site mE1_TFBS_kn
3R	27091380	3R_27091380_SNP [dm3] 3R_31265658_SNP [dm6]	C	G	1.411e^-5	0.778	UPSTREAM ppk24 INTERGENIC
3R	26116685	3R_26116685_SNP [dm3] 3R_30290963_SNP [dm6]	T	C	1.437e^-5	0.778	INTRON hdc
X	21083139	X_21083139_SNP [dm3] X_21212112_SNP [dm6]	T	A	1.480e^-5	0.778	INTRON CG32521
2L	12737682	2L_12737682_SNP [dm3] 2L_12737682_SNP [dm6]	T	C	1.489e^-5	0.778	INTRON MRP	TF binding site mE1_TFBS_cad
2L	17641292	2L_17641292_INS [dm3] 2L_17641292_INS [dm6]	A	ATTCCTAGAACGAGGAATAT...	1.493e^-5	0.778	INTERGENIC
X	6387107	X_6387107_SNP [dm3] X_6493074_SNP [dm6]	T	A	1.560e^-5	0.791	INTRON CG42340
3L	10773187	3L_10773187_SNP [dm3] 3L_10780087_SNP [dm6]	A	G	1.608e^-5	0.794	INTERGENIC
3L	16267559	3L_16267559_SNP [dm3] 3L_16274459_SNP [dm6]	T	C	1.826e^-5	0.799	DOWNSTREAM CG13066 INTERGENIC
3R	26116531	3R_26116531_SNP [dm3] 3R_30290809_SNP [dm6]	A	G	1.875e^-5	0.799	INTRON hdc
3L	12262684	3L_12262684_DEL [dm3] 3L_12269584_DEL [dm6]	GG	G	1.903e^-5	0.799	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
2R	6542807	2R_6542807_SNP [dm3] 2R_10655302_SNP [dm6]	A	T	1.923e^-5	0.799	INTERGENIC
2R	10711014	2R_10711014_SNP [dm3] 2R_14823509_SNP [dm6]	T	C	1.972e^-5	0.799	DOWNSTREAM CR45329 INTERGENIC
2R	15297420	2R_15297420_SNP [dm3] 2R_19409915_SNP [dm6]	A	G	2.002e^-5	0.799	SYNONYMOUS_CODING hts
X	18909633	X_18909633_SNP [dm3] X_19015600_SNP [dm6]	T	A	2.032e^-5	0.799	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12718772	3L_12718772_SNP [dm3] 3L_12725672_SNP [dm6]	A	T	2.093e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18479432	3L_18479432_SNP [dm3] 3L_18486332_SNP [dm6]	C	G	2.102e^-5	0.799	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
3R	9148240	3R_9148240_SNP [dm3] 3R_13322518_SNP [dm6]	G	A	2.108e^-5	0.799	INTERGENIC
3R	5731608	3R_5731608_SNP [dm3] 3R_9905886_SNP [dm6]	A	G	2.131e^-5	0.799	INTRON Glut4EF	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3345713	2L_3345713_SNP [dm3] 2L_3345713_SNP [dm6]	A	G	2.163e^-5	0.799	INTRON E23	TF binding site mE1_TFBS_cnc
2L	11397516	2L_11397516_SNP [dm3] 2L_11397516_SNP [dm6]	C	G	2.358e^-5	0.799	INTERGENIC	regulatory region REDfly_CRMs
2R	1204590	2R_1204590_SNP [dm3] 2R_5317085_SNP [dm6]	T	C	2.374e^-5	0.799	INTRON sxc	transposable element FlyBase
3R	14905850	3R_14905850_SNP [dm3] 3R_19080128_SNP [dm6]	G	T	2.396e^-5	0.799	INTRON cdi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	10093495	X_10093495_SNP [dm3] X_10199462_SNP [dm6]	C	G	2.439e^-5	0.799	INTRON CR44894
3L	15193796	3L_15193796_SNP [dm3] 3L_15200696_SNP [dm6]	G	C	2.443e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Ubx
2R	19330915	2R_19330915_SNP [dm3] 2R_23443392_SNP [dm6]	C	T	2.471e^-5	0.799	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8147603	3R_8147603_SNP [dm3] 3R_12321881_SNP [dm6]	G	A	2.488e^-5	0.799	DOWNSTREAM tRNA:CR31432 INTERGENIC
2R	17286540	2R_17286540_SNP [dm3] 2R_21399035_SNP [dm6]	G	A	2.489e^-5	0.799	SYNONYMOUS_CODING Sdc INTRON Sdc
3L	24197591	3L_24197591_SNP [dm3] 3L_24204491_SNP [dm6]	C	T	2.544e^-5	0.799	INTRON Snap25
X	19420639	X_19420639_SNP [dm3] X_19526606_SNP [dm6]	C	T	2.712e^-5	0.799	DOWNSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4791445	3L_4791445_SNP [dm3] 3L_4791445_SNP [dm6]	T	A	2.729e^-5	0.799	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
2R	6934172	2R_6934172_SNP [dm3] 2R_11046667_SNP [dm6]	A	G	2.747e^-5	0.799	INTRON luna
3L	14641444	3L_14641444_SNP [dm3] 3L_14648344_SNP [dm6]	C	G	2.882e^-5	0.799	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9653593	3R_9653593_SNP [dm3] 3R_13827871_SNP [dm6]	T	G	2.898e^-5	0.799	UTR_5_PRIME Mst87F UPSTREAM CR43300 & 1 other	regulatory region REDfly_CRMs
X	5299887	X_5299887_SNP [dm3] X_5405854_SNP [dm6]	G	A	3.008e^-5	0.799	SPLICE_SITE_REGION NAAT1 DOWNSTREAM SK INTRON NAAT1
3R	11231035	3R_11231035_INS [dm3] 3R_15405313_INS [dm6]	A	AGGGGGAAAA	3.214e^-5	0.799	SPLICE_SITE_REGION CG6125 INTRON CG6125
X	18909619	X_18909619_SNP [dm3] X_19015586_SNP [dm6]	A	G	3.302e^-5	0.799	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4176822	3L_4176822_SNP [dm3] 3L_4176822_SNP [dm6]	C	T	3.359e^-5	0.799	INTRON CG18675 & 1 other
3L	4176830	3L_4176830_SNP [dm3] 3L_4176830_SNP [dm6]	G	C	3.359e^-5	0.799	INTRON CG18675 & 1 other
3L	16906443	3L_16906443_SNP [dm3] 3L_16913343_SNP [dm6]	C	T	3.378e^-5	0.799	SYNONYMOUS_CODING Lmpt
2L	19976981	2L_19976981_SNP [dm3] 2L_19976981_SNP [dm6]	C	A	3.402e^-5	0.799	INTRON CG43861
3R	14544361	3R_14544361_SNP [dm3] 3R_18718639_SNP [dm6]	A	C	3.432e^-5	0.799	UTR_3_PRIME VAChT INTRON Cha
3R	5760867	3R_5760867_SNP [dm3] 3R_9935145_SNP [dm6]	C	T	3.438e^-5	0.799	INTRON Glut4EF
2L	12737835	2L_12737835_SNP [dm3] 2L_12737835_SNP [dm6]	G	A	3.539e^-5	0.799	INTRON MRP	TF binding site mE1_TFBS_cad
3R	23429248	3R_23429248_SNP [dm3] 3R_27603526_SNP [dm6]	C	A	3.613e^-5	0.799	INTRON dsd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26116455	3R_26116455_SNP [dm3] 3R_30290733_SNP [dm6]	A	C	3.654e^-5	0.799	INTRON hdc
3R	16431274	3R_16431274_INS [dm3] 3R_20605552_INS [dm6]	C	CGCC	3.686e^-5	0.799	UPSTREAM tRNA:CR31506 INTRON bon	TF binding site mE1_TFBS_cad
3L	21641346	3L_21641346_SNP [dm3] 3L_21648246_SNP [dm6]	G	C	3.690e^-5	0.799	INTRON CG43980
X	10343624	X_10343624_SNP [dm3] X_10449591_SNP [dm6]	A	G	3.831e^-5	0.799	INTRON CG32683
3L	5646627	3L_5646627_SNP [dm3] 3L_5653527_SNP [dm6]	C	T	4.060e^-5	0.799	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	21164575	2L_21164575_SNP [dm3] 2L_21164575_SNP [dm6]	C	T	4.196e^-5	0.799	SYNONYMOUS_CODING CG9246 UPSTREAM CR44910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19138838	3R_19138838_SNP [dm3] 3R_23313116_SNP [dm6]	A	G	4.201e^-5	0.799	INTRON pnt
3L	16261776	3L_16261776_SNP [dm3] 3L_16268676_SNP [dm6]	C	T	4.207e^-5	0.799	UPSTREAM CG4950 & 1 other INTERGENIC
3R	21650153	3R_21650153_SNP [dm3] 3R_25824431_SNP [dm6]	C	T	4.232e^-5	0.799	EXON CR44949
3L	4789933	3L_4789933_SNP [dm3] 3L_4789933_SNP [dm6]	G	C	4.246e^-5	0.799	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
X	21083199	X_21083199_SNP [dm3] X_21212172_SNP [dm6]	A	G	4.377e^-5	0.799	INTRON CG32521
X	2109120	X_2109120_SNP [dm3] X_2215087_SNP [dm6]	G	A	4.453e^-5	0.799	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	7534015	2R_7534015_SNP [dm3] 2R_11646510_SNP [dm6]	C	G	4.604e^-5	0.799	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21650184	3R_21650184_SNP [dm3] 3R_25824462_SNP [dm6]	G	A	4.651e^-5	0.799	EXON CR44949
2L	12797629	2L_12797629_SNP [dm3] 2L_12797629_SNP [dm6]	G	C	4.661e^-5	0.799	INTERGENIC
X	4560398	X_4560398_SNP [dm3] X_4666365_SNP [dm6]	G	A	4.689e^-5	0.799	DOWNSTREAM rap INTRON CG3009
2R	16530589	2R_16530589_SNP [dm3] 2R_20643084_SNP [dm6]	A	G	4.704e^-5	0.799	SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 UPSTREAM DMAP1 DOWNSTREAM CG11110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	5078912	3R_5078912_DEL [dm3] 3R_9253190_DEL [dm6]	ACATAAAATTAACAAGGTTT...	TAAACGAATAAACGAATATT...	4.714e^-5	0.799	UTR_3_PRIME St2 UPSTREAM CR16735 DOWNSTREAM St2 INTRAGENIC St2 INTERGENIC
3R	9429465	3R_9429465_SNP [dm3] 3R_13603743_SNP [dm6]	G	A	4.809e^-5	0.799	INTERGENIC
3L	12712522	3L_12712522_SNP [dm3] 3L_12719422_SNP [dm6]	A	G	4.878e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	19443933	X_19443933_DEL [dm3] X_19549900_DEL [dm6]	TAAATA	T	4.885e^-5	0.799	INTERGENIC
2R	8785712	2R_8785712_SNP [dm3] 2R_12898207_SNP [dm6]	G	C	4.956e^-5	0.799	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15298962	2R_15298962_SNP [dm3] 2R_19411457_SNP [dm6]	G	A	5.006e^-5	0.799	UTR_5_PRIME hts UPSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	14108017	X_14108017_INS [dm3] X_14213984_INS [dm6]	C	CTT	5.007e^-5	0.799	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14177225	3L_14177225_SNP [dm3] 3L_14184125_SNP [dm6]	C	G	5.070e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5340676	2L_5340676_SNP [dm3] 2L_5340676_SNP [dm6]	T	G	5.079e^-5	0.799	SYNONYMOUS_CODING CG12512	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17639810	2L_17639810_SNP [dm3] 2L_17639810_SNP [dm6]	T	C	5.105e^-5	0.799	INTERGENIC
2L	14360945	2L_14360945_SNP [dm3] 2L_14360945_SNP [dm6]	A	G	5.124e^-5	0.799	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9527956	2L_9527956_SNP [dm3] 2L_9527956_SNP [dm6]	C	T	5.188e^-5	0.799	UPSTREAM CG31883 INTRON Oatp30B
2R	7043345	2R_7043345_SNP [dm3] 2R_11155840_SNP [dm6]	G	A	5.216e^-5	0.799	DOWNSTREAM CG13230 INTRON CG13229
2R	15298814	2R_15298814_SNP [dm3] 2R_19411309_SNP [dm6]	T	C	5.233e^-5	0.799	START_GAINED hts UTR_5_PRIME hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19184001	2R_19184001_SNP [dm3] 2R_23296478_SNP [dm6]	C	A	5.257e^-5	0.799	INTERGENIC
3R	21650089	3R_21650089_SNP [dm3] 3R_25824367_SNP [dm6]	C	A	5.288e^-5	0.799	EXON CR44949
3R	10005069	3R_10005069_SNP [dm3] 3R_14179347_SNP [dm6]	C	T	5.314e^-5	0.799	INTRON Dop1R1
2R	1848498	2R_1848498_SNP [dm3] 2R_5960993_SNP [dm6]	A	G	5.337e^-5	0.799	UTR_3_PRIME CG7881 DOWNSTREAM CG7881 & 1 other
2R	5679679	2R_5679679_SNP [dm3] 2R_9792174_SNP [dm6]	T	C	5.462e^-5	0.799	DOWNSTREAM CR44208 INTRON CG1688
2L	17639711	2L_17639711_SNP [dm3] 2L_17639711_SNP [dm6]	A	G	5.497e^-5	0.799	INTERGENIC
3R	19139595	3R_19139595_SNP [dm3] 3R_23313873_SNP [dm6]	G	A	5.524e^-5	0.799	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11245325	2L_11245325_SNP [dm3] 2L_11245325_SNP [dm6]	A	G	5.561e^-5	0.799	INTRON ab
2R	10958364	2R_10958364_SNP [dm3] 2R_15070859_SNP [dm6]	T	C	5.607e^-5	0.799	INTERGENIC
3R	4134256	3R_4134256_SNP [dm3] 3R_8308534_SNP [dm6]	A	G	5.775e^-5	0.799	SYNONYMOUS_CODING tex UPSTREAM mir-4918 DOWNSTREAM CG11693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6387118	X_6387118_SNP [dm3] X_6493085_SNP [dm6]	T	C	5.911e^-5	0.799	INTRON CG42340
3R	12218127	3R_12218127_INS [dm3] 3R_16392405_INS [dm6]	A	AA	5.946e^-5	0.799	INTRON ss	regulatory region REDfly_CRMs
2L	12904165	2L_12904165_SNP [dm3] 2L_12904165_SNP [dm6]	C	G	6.023e^-5	0.799	INTERGENIC
2R	8650150	2R_8650150_SNP [dm3] 2R_12762645_SNP [dm6]	T	A	6.045e^-5	0.799	SYNONYMOUS_CODING CG12374	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25412178	3R_25412178_SNP [dm3] 3R_29586456_SNP [dm6]	C	A	6.102e^-5	0.799	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	7835535	3L_7835535_SNP [dm3] 3L_7842435_SNP [dm6]	G	A	6.157e^-5	0.799	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	3527844	2L_3527844_SNP [dm3] 2L_3527844_SNP [dm6]	A	G	6.168e^-5	0.799	SYNONYMOUS_CODING Spindly DOWNSTREAM CG8852	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12795711	2L_12795711_SNP [dm3] 2L_12795711_SNP [dm6]	G	A	6.169e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17787982	3L_17787982_SNP [dm3] 3L_17794882_SNP [dm6]	T	C	6.199e^-5	0.799	SYNONYMOUS_CODING CG42816	TF binding site mE1_TFBS_sens
3L	11756268	3L_11756268_SNP [dm3] 3L_11763168_SNP [dm6]	T	G	6.257e^-5	0.799	INTRON CG6024
2L	11609684	2L_11609684_SNP [dm3] 2L_11609684_SNP [dm6]	G	A	6.282e^-5	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
2R	16192569	2R_16192569_SNP [dm3] 2R_20305064_SNP [dm6]	G	A	6.381e^-5	0.799	INTRON CG11200
3L	14175019	3L_14175019_SNP [dm3] 3L_14181919_SNP [dm6]	T	C	6.389e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7043346	2R_7043346_SNP [dm3] 2R_11155841_SNP [dm6]	G	A	6.402e^-5	0.799	DOWNSTREAM CG13230 INTRON CG13229
3L	4776509	3L_4776509_SNP [dm3] 3L_4776509_SNP [dm6]	G	A	6.406e^-5	0.799	INTRON RhoGEF64C
2L	12795736	2L_12795736_SNP [dm3] 2L_12795736_SNP [dm6]	G	A	6.496e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17314216	2R_17314216_SNP [dm3] 2R_21426711_SNP [dm6]	A	T	6.525e^-5	0.799	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7015571	2L_7015571_SNP [dm3] 2L_7015571_SNP [dm6]	T	G	6.570e^-5	0.799	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1696303	3R_1696303_SNP [dm3] 3R_5870581_SNP [dm6]	G	A	6.572e^-5	0.799	INTRON CG34113
2R	5675047	2R_5675047_SNP [dm3] 2R_9787542_SNP [dm6]	A	G	6.644e^-5	0.799	UPSTREAM CR44208 INTRON CG1688
3R	4082212	3R_4082212_DEL [dm3] 3R_8256490_DEL [dm6]	CC	C	6.692e^-5	0.799	INTRON mtg
3R	12980470	3R_12980470_SNP [dm3] 3R_17154748_SNP [dm6]	G	A	6.722e^-5	0.799	SYNONYMOUS_CODING Mur89F DOWNSTREAM CG5292	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21164620	2L_21164620_SNP [dm3] 2L_21164620_SNP [dm6]	T	C	6.745e^-5	0.799	SYNONYMOUS_CODING CG9246 UPSTREAM CR44910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9752214	3R_9752214_SNP [dm3] 3R_13926492_SNP [dm6]	A	T	6.808e^-5	0.799	INTERGENIC
2R	11878735	2R_11878735_SNP [dm3] 2R_15991230_SNP [dm6]	C	G	6.814e^-5	0.799	UTR_5_PRIME CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	12262498	3L_12262498_SNP [dm3] 3L_12269398_SNP [dm6]	A	T	6.942e^-5	0.799	UTR_3_PRIME CG32100 DOWNSTREAM Pbgs
2L	3529739	2L_3529739_SNP [dm3] 2L_3529739_SNP [dm6]	G	A	6.954e^-5	0.799	INTRON Spindly	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	16560395	2L_16560395_SNP [dm3] 2L_16560395_SNP [dm6]	G	T	7.026e^-5	0.799	INTRON CG42389
X	5546589	X_5546589_DEL [dm3] X_5652556_DEL [dm6]	TT	A	7.096e^-5	0.799	UTR_3_PRIME CG42265
X	21082915	X_21082915_SNP [dm3] X_21211888_SNP [dm6]	T	C	7.116e^-5	0.799	INTRON CG32521
3L	7404630	3L_7404630_SNP [dm3] 3L_7411530_SNP [dm6]	G	A	7.145e^-5	0.799	INTERGENIC
2L	11609740	2L_11609740_SNP [dm3] 2L_11609740_SNP [dm6]	C	G	7.160e^-5	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3R	21596002	3R_21596002_DEL [dm3] 3R_25770280_DEL [dm6]	GTGGCGAATAATGCCAAG...	G	7.260e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12799611	2L_12799611_SNP [dm3] 2L_12799611_SNP [dm6]	T	C	7.288e^-5	0.799	INTERGENIC
2R	11792480	2R_11792480_SNP [dm3] 2R_15904975_SNP [dm6]	T	C	7.350e^-5	0.799	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	20338985	3R_20338985_SNP [dm3] 3R_24513263_SNP [dm6]	G	C	7.359e^-5	0.799	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2	TF binding site BDTNP1_TFBS_dl
3R	23963224	3R_23963224_SNP [dm3] 3R_28137502_SNP [dm6]	T	C	7.398e^-5	0.799	INTERGENIC
2R	10219418	2R_10219418_SNP [dm3] 2R_14331913_SNP [dm6]	C	T	7.420e^-5	0.799	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3531316	2L_3531316_SNP [dm3] 2L_3531316_SNP [dm6]	G	C	7.428e^-5	0.799	SYNONYMOUS_CODING Che-13 UPSTREAM Spindly
3L	7836879	3L_7836879_SNP [dm3] 3L_7843779_SNP [dm6]	A	T	7.445e^-5	0.799	INTRON Pdp1	regulatory region REDfly_CRMs
3R	13962367	3R_13962367_SNP [dm3] 3R_18136645_SNP [dm6]	G	C	7.448e^-5	0.799	INTERGENIC
3R	5983570	3R_5983570_SNP [dm3] 3R_10157848_SNP [dm6]	G	A	7.516e^-5	0.799	INTRON Invadolysin	TF binding site mE1_TFBS_chinmo
3R	24581488	3R_24581488_SNP [dm3] 3R_28755766_SNP [dm6]	G	C	7.537e^-5	0.799	DOWNSTREAM CG9997 INTRON CG9997
3R	27092006	3R_27092006_SNP [dm3] 3R_31266284_SNP [dm6]	G	A	7.599e^-5	0.799	NON_SYNONYMOUS_CODING ppk24
2L	12804342	2L_12804342_SNP [dm3] 2L_12804342_SNP [dm6]	A	G	7.628e^-5	0.799	INTERGENIC
X	14394338	X_14394338_SNP [dm3] X_14500305_SNP [dm6]	T	C	7.669e^-5	0.799	INTERGENIC
3R	14905849	3R_14905849_SNP [dm3] 3R_19080127_SNP [dm6]	G	A	7.785e^-5	0.799	INTRON cdi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17641282	2L_17641282_SNP [dm3] 2L_17641282_SNP [dm6]	A	T	7.799e^-5	0.799	INTERGENIC
3R	9867619	3R_9867619_SNP [dm3] 3R_14041897_SNP [dm6]	A	T	7.823e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12795942	2L_12795942_SNP [dm3] 2L_12795942_SNP [dm6]	G	A	7.825e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15727776	3L_15727776_SNP [dm3] 3L_15734676_SNP [dm6]	A	C	7.891e^-5	0.799	INTERGENIC
2L	6519517	2L_6519517_SNP [dm3] 2L_6519517_SNP [dm6]	A	C	7.985e^-5	0.799	INTRON CG31637
3L	3282726	3L_3282726_SNP [dm3] 3L_3282726_SNP [dm6]	T	C	7.987e^-5	0.799	INTRON CG12017
2R	19340111	2R_19340111_SNP [dm3] 2R_23452588_SNP [dm6]	C	T	8.012e^-5	0.799	INTRON CG43795
3L	5275695	3L_5275695_SNP [dm3] 3L_5282595_SNP [dm6]	A	T	8.163e^-5	0.799	INTERGENIC
X	11273441	X_11273441_SNP [dm3] X_11379408_SNP [dm6]	G	A	8.174e^-5	0.799	INTRON dlg1
3L	15011880	3L_15011880_SNP [dm3] 3L_15018780_SNP [dm6]	A	G	8.428e^-5	0.799	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13624596	3L_13624596_SNP [dm3] 3L_13631496_SNP [dm6]	G	A	8.454e^-5	0.799	INTRON bru-3
3R	13962362	3R_13962362_SNP [dm3] 3R_18136640_SNP [dm6]	A	T	8.465e^-5	0.799	INTERGENIC
3L	12051704	3L_12051704_SNP [dm3] 3L_12058604_SNP [dm6]	G	A	8.473e^-5	0.799	INTRON rols
3L	5881190	3L_5881190_SNP [dm3] 3L_5888090_SNP [dm6]	T	A	8.496e^-5	0.799	INTERGENIC
2R	18621369	2R_18621369_SNP [dm3] 2R_22733864_SNP [dm6]	G	A	8.631e^-5	0.799	SYNONYMOUS_CODING jbug
3L	16285410	3L_16285410_SNP [dm3] 3L_16292310_SNP [dm6]	T	A	8.660e^-5	0.799	INTERGENIC
3L	12690743	3L_12690743_SNP [dm3] 3L_12697643_SNP [dm6]	G	T	8.669e^-5	0.799	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10465673	2L_10465673_SNP [dm3] 2L_10465673_SNP [dm6]	T	C	8.728e^-5	0.799	INTRON RluA-1
3L	13651038	3L_13651038_SNP [dm3] 3L_13657938_SNP [dm6]	C	T	8.878e^-5	0.799	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	15939923	2R_15939923_INS [dm3] 2R_20052418_INS [dm6]	G	GACCGAAG	8.878e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	22855061	3L_22855061_SNP [dm3] 3L_22861961_SNP [dm6]	T	G	8.922e^-5	0.799	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	2547731	3L_2547731_DEL [dm3] 3L_2547731_DEL [dm6]	GC	G	8.944e^-5	0.799	INTRON Spn
2R	9090987	2R_9090987_SNP [dm3] 2R_13203482_SNP [dm6]	T	C	8.993e^-5	0.799	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
2R	17298438	2R_17298438_SNP [dm3] 2R_21410933_SNP [dm6]	A	T	9.000e^-5	0.799	INTRON Sdc
2L	12904181	2L_12904181_INS [dm3] 2L_12904181_INS [dm6]	T	TGTGCCTAGAAGC...	9.021e^-5	0.799	INTERGENIC
2R	17298230	2R_17298230_DEL [dm3] 2R_21410725_DEL [dm6]	GCTTGGG	G	9.034e^-5	0.799	INTRON Sdc
2L	12799708	2L_12799708_SNP [dm3] 2L_12799708_SNP [dm6]	G	A	9.045e^-5	0.799	INTERGENIC
2L	3530877	2L_3530877_SNP [dm3] 2L_3530877_SNP [dm6]	G	A	9.069e^-5	0.799	UTR_5_PRIME Che-13 UPSTREAM Spindly	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4776052	3L_4776052_SNP [dm3] 3L_4776052_SNP [dm6]	T	C	9.070e^-5	0.799	INTRON RhoGEF64C
2R	9598094	2R_9598094_SNP [dm3] 2R_13710589_SNP [dm6]	A	G	9.093e^-5	0.799	INTRON fas
3R	20377117	3R_20377117_SNP [dm3] 3R_24551395_SNP [dm6]	T	C	9.155e^-5	0.799	SYNONYMOUS_CODING Esyt2 UTR_5_PRIME Esyt2	TF binding site mE1_TFBS_cad
2L	11397554	2L_11397554_SNP [dm3] 2L_11397554_SNP [dm6]	A	G	9.158e^-5	0.799	INTERGENIC	regulatory region REDfly_CRMs
2R	6934177	2R_6934177_SNP [dm3] 2R_11046672_SNP [dm6]	T	C	9.161e^-5	0.799	INTRON luna
2L	7017482	2L_7017482_SNP [dm3] 2L_7017482_SNP [dm6]	A	G	9.209e^-5	0.799	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
3R	9867618	3R_9867618_SNP [dm3] 3R_14041896_SNP [dm6]	A	G	9.239e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11201413	2L_11201413_SNP [dm3] 2L_11201413_SNP [dm6]	T	G	9.256e^-5	0.799	INTRON Ca-beta
3L	11347671	3L_11347671_SNP [dm3] 3L_11354571_SNP [dm6]	G	A	9.298e^-5	0.799	INTERGENIC
2R	5452078	2R_5452078_SNP [dm3] 2R_9564573_SNP [dm6]	T	C	9.314e^-5	0.799	DOWNSTREAM CG1809 EXON CR45281	TF binding site mE1_TFBS_HSA
3L	2425941	3L_2425941_SNP [dm3] 3L_2425941_SNP [dm6]	G	T	9.391e^-5	0.799	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23587244	3R_23587244_SNP [dm3] 3R_27761522_SNP [dm6]	G	C	9.458e^-5	0.799	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1848515	2R_1848515_SNP [dm3] 2R_5961010_SNP [dm6]	G	A	9.585e^-5	0.799	UTR_3_PRIME CG7881 DOWNSTREAM CG7882
2R	16854737	2R_16854737_SNP [dm3] 2R_20967232_SNP [dm6]	C	G	9.659e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13962339	3R_13962339_SNP [dm3] 3R_18136617_SNP [dm6]	G	A	9.699e^-5	0.799	INTERGENIC
2L	7017485	2L_7017485_SNP [dm3] 2L_7017485_SNP [dm6]	A	G	9.703e^-5	0.799	SPLICE_SITE_REGION ade3 SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
3R	26110943	3R_26110943_SNP [dm3] 3R_30285221_SNP [dm6]	T	C	9.888e^-5	0.799	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5411833	3R_5411833_INS [dm3] 3R_9586111_INS [dm6]	G	GG	9.899e^-5	0.799	UTR_3_PRIME CG8301 UPSTREAM P58IPK
X	12272167	X_12272167_SNP [dm3] X_12378134_SNP [dm6]	A	G	9.929e^-5	0.799	UPSTREAM Ir11a INTERGENIC
3L	5838923	3L_5838923_SNP [dm3] 3L_5845823_SNP [dm6]	G	A	1.000e^-4	0.799	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16442464	3L_16442464_SNP [dm3] 3L_16449364_SNP [dm6]	G	T	1.001e^-4	0.799	INTRON CG33158 & 1 other
3L	11756291	3L_11756291_SNP [dm3] 3L_11763191_SNP [dm6]	T	C	1.008e^-4	0.799	INTRON CG6024
3L	23945762	3L_23945762_SNP [dm3] 3L_23952662_SNP [dm6]	G	A	1.013e^-4	0.799	INTRON CG40470
2L	3530515	2L_3530515_SNP [dm3] 2L_3530515_SNP [dm6]	A	G	1.015e^-4	0.799	UPSTREAM Che-13 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4225732	3R_4225732_SNP [dm3] 3R_8400010_SNP [dm6]	T	C	1.022e^-4	0.799	INTRON CG45263
2R	1842634	2R_1842634_SNP [dm3] 2R_5955129_SNP [dm6]	A	G	1.035e^-4	0.799	INTERGENIC
2R	1849221	2R_1849221_SNP [dm3] 2R_5961716_SNP [dm6]	A	G	1.035e^-4	0.799	INTRON CG7881
2R	12053634	2R_12053634_SNP [dm3] 2R_16166129_SNP [dm6]	T	G	1.036e^-4	0.799	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
2L	14342002	2L_14342002_SNP [dm3] 2L_14342002_SNP [dm6]	T	A	1.041e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	15297909	2R_15297909_SNP [dm3] 2R_19410404_SNP [dm6]	G	C	1.041e^-4	0.799	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
2L	3527911	2L_3527911_SNP [dm3] 2L_3527911_SNP [dm6]	T	G	1.053e^-4	0.799	NON_SYNONYMOUS_CODING Spindly DOWNSTREAM CG8852
3L	7101256	3L_7101256_SNP [dm3] 3L_7108156_SNP [dm6]	T	A	1.053e^-4	0.799	INTRON form3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9257235	3L_9257235_SNP [dm3] 3L_9264135_SNP [dm6]	T	G	1.072e^-4	0.799	INTRON GluRIB
2L	1954616	2L_1954616_SNP [dm3] 2L_1954616_SNP [dm6]	G	A	1.074e^-4	0.799	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3583276	3L_3583276_SNP [dm3] 3L_3583276_SNP [dm6]	G	A	1.086e^-4	0.799	INTRON Eip63E	TF binding site mE1_TFBS_inv
2R	1848443	2R_1848443_SNP [dm3] 2R_5960938_SNP [dm6]	C	T	1.086e^-4	0.799	UTR_3_PRIME CG7881 DOWNSTREAM CG7881 & 1 other
3L	13484819	3L_13484819_SNP [dm3] 3L_13491719_SNP [dm6]	C	T	1.094e^-4	0.799	INTRON Tgi
3L	22112649	3L_22112649_SNP [dm3] 3L_22119549_SNP [dm6]	T	G	1.105e^-4	0.799	INTERGENIC
2R	18621501	2R_18621501_SNP [dm3] 2R_22733996_SNP [dm6]	C	T	1.105e^-4	0.799	SYNONYMOUS_CODING jbug
X	18797738	X_18797738_SNP [dm3] X_18903705_SNP [dm6]	C	G	1.105e^-4	0.799	INTRON CG7378
3L	10508855	3L_10508855_SNP [dm3] 3L_10515755_SNP [dm6]	C	T	1.106e^-4	0.799	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	25413009	3R_25413009_SNP [dm3] 3R_29587287_SNP [dm6]	A	C	1.109e^-4	0.799	UTR_3_PRIME CG7567	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	1848482	2R_1848482_SNP [dm3] 2R_5960977_SNP [dm6]	A	T	1.111e^-4	0.799	UTR_3_PRIME CG7881 DOWNSTREAM CG7881 & 1 other
3R	8358482	3R_8358482_SNP [dm3] 3R_12532760_SNP [dm6]	T	G	1.112e^-4	0.799	INTRON Octbeta3R
2R	1868883	2R_1868883_SNP [dm3] 2R_5981378_SNP [dm6]	T	A	1.114e^-4	0.799	UPSTREAM mle & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_kn
3R	15027322	3R_15027322_SNP [dm3] 3R_19201600_SNP [dm6]	C	A	1.116e^-4	0.799	DOWNSTREAM CG31475 INTERGENIC
3R	18962313	3R_18962313_SNP [dm3] 3R_23136591_SNP [dm6]	G	C	1.117e^-4	0.799	INTRON hh
3L	4780814	3L_4780814_SNP [dm3] 3L_4780814_SNP [dm6]	A	G	1.121e^-4	0.799	INTRON RhoGEF64C
3R	13958062	3R_13958062_SNP [dm3] 3R_18132340_SNP [dm6]	A	G	1.129e^-4	0.799	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1879442	2R_1879442_SNP [dm3] 2R_5991937_SNP [dm6]	G	T	1.131e^-4	0.799	INTRON Src42A
2R	17301505	2R_17301505_SNP [dm3] 2R_21414000_SNP [dm6]	G	A	1.131e^-4	0.799	INTRON Sdc
3R	18682405	3R_18682405_SNP [dm3] 3R_22856683_SNP [dm6]	T	A	1.133e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12262501	3L_12262501_SNP [dm3] 3L_12269401_SNP [dm6]	T	C	1.136e^-4	0.799	UTR_3_PRIME CG32100 DOWNSTREAM Pbgs
2L	11679486	2L_11679486_SNP [dm3] 2L_11679486_SNP [dm6]	A	T	1.136e^-4	0.799	INTERGENIC
2L	16560460	2L_16560460_SNP [dm3] 2L_16560460_SNP [dm6]	G	T	1.141e^-4	0.799	INTRON CG42389
2L	21071782	2L_21071782_SNP [dm3] 2L_21071782_SNP [dm6]	G	A	1.143e^-4	0.799	UPSTREAM CG9265 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	18621534	2R_18621534_SNP [dm3] 2R_22734029_SNP [dm6]	G	A	1.143e^-4	0.799	SYNONYMOUS_CODING jbug
3R	4365663	3R_4365663_SNP [dm3] 3R_8539941_SNP [dm6]	C	T	1.149e^-4	0.799	INTERGENIC
3L	18180592	3L_18180592_SNP [dm3] 3L_18187492_SNP [dm6]	A	G	1.156e^-4	0.799	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	12986477	3R_12986477_SNP [dm3] 3R_17160755_SNP [dm6]	C	T	1.156e^-4	0.799	INTRON Mur89F
3R	10652495	3R_10652495_SNP [dm3] 3R_14826773_SNP [dm6]	C	G	1.159e^-4	0.799	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15509992	2L_15509992_SNP [dm3] 2L_15509992_SNP [dm6]	A	T	1.160e^-4	0.799	INTERGENIC
2R	7043337	2R_7043337_SNP [dm3] 2R_11155832_SNP [dm6]	G	A	1.161e^-4	0.799	DOWNSTREAM CG13230 INTRON CG13229
3L	13243899	3L_13243899_SNP [dm3] 3L_13250799_SNP [dm6]	A	T	1.162e^-4	0.799	INTRON caps	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	9711019	3R_9711019_SNP [dm3] 3R_13885297_SNP [dm6]	C	G	1.168e^-4	0.799	INTERGENIC
3R	26115749	3R_26115749_DEL [dm3] 3R_30290027_DEL [dm6]	AGCG	A	1.173e^-4	0.799	INTRON hdc
3L	14484862	3L_14484862_SNP [dm3] 3L_14491762_SNP [dm6]	G	A	1.181e^-4	0.799	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12795760	2L_12795760_SNP [dm3] 2L_12795760_SNP [dm6]	C	A	1.188e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18041411	2R_18041411_SNP [dm3] 2R_22153906_SNP [dm6]	C	G	1.191e^-4	0.799	INTRON a
3R	15298476	3R_15298476_SNP [dm3] 3R_19472754_SNP [dm6]	T	C	1.192e^-4	0.799	INTRON Dys	TF binding site mE1_TFBS_cad
2L	3529590	2L_3529590_SNP [dm3] 2L_3529590_SNP [dm6]	C	T	1.195e^-4	0.799	SYNONYMOUS_CODING Spindly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10939489	2L_10939489_SNP [dm3] 2L_10939489_SNP [dm6]	G	A	1.196e^-4	0.799	INTRON dpr2
2L	11609676	2L_11609676_SNP [dm3] 2L_11609676_SNP [dm6]	T	A	1.202e^-4	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3L	20179891	3L_20179891_SNP [dm3] 3L_20186791_SNP [dm6]	G	A	1.208e^-4	0.799	INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17748607	2R_17748607_SNP [dm3] 2R_21861102_SNP [dm6]	G	A	1.215e^-4	0.799	SYNONYMOUS_CODING CG9294	TF binding site mE1_TFBS_HSA
2L	17641254	2L_17641254_SNP [dm3] 2L_17641254_SNP [dm6]	G	A	1.216e^-4	0.799	INTERGENIC
2R	1843236	2R_1843236_SNP [dm3] 2R_5955731_SNP [dm6]	T	C	1.222e^-4	0.799	INTERGENIC
2L	21166796	2L_21166796_SNP [dm3] 2L_21166796_SNP [dm6]	T	C	1.233e^-4	0.799	SYNONYMOUS_CODING CG43345 START_GAINED CG43346 UTR_5_PRIME CG43346 UPSTREAM CG43346 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6569879	3L_6569879_SNP [dm3] 3L_6576779_SNP [dm6]	A	T	1.233e^-4	0.799	INTRON CG18769 & 1 other
3L	5734019	3L_5734019_SNP [dm3] 3L_5740919_SNP [dm6]	C	T	1.234e^-4	0.799	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2L	11452253	2L_11452253_SNP [dm3] 2L_11452253_SNP [dm6]	A	T	1.235e^-4	0.799	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13203920	3L_13203920_SNP [dm3] 3L_13210820_SNP [dm6]	T	G	1.237e^-4	0.799	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19036690	3R_19036690_SNP [dm3] 3R_23210968_SNP [dm6]	G	A	1.241e^-4	0.799	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	18041383	2R_18041383_SNP [dm3] 2R_22153878_SNP [dm6]	G	T	1.243e^-4	0.799	INTRON a
3R	9867621	3R_9867621_INS [dm3] 3R_14041899_INS [dm6]	T	TTA	1.245e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25810786	3R_25810786_SNP [dm3] 3R_29985064_SNP [dm6]	A	G	1.247e^-4	0.799	INTRON CG7896
3R	23963192	3R_23963192_SNP [dm3] 3R_28137470_SNP [dm6]	A	T	1.256e^-4	0.799	INTERGENIC
3R	3155790	3R_3155790_SNP [dm3] 3R_7330068_SNP [dm6]	T	G	1.256e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4780928	3L_4780928_SNP [dm3] 3L_4780928_SNP [dm6]	C	T	1.265e^-4	0.799	INTRON RhoGEF64C
2L	17641270	2L_17641270_SNP [dm3] 2L_17641270_SNP [dm6]	A	T	1.271e^-4	0.799	INTERGENIC
2L	7017479	2L_7017479_SNP [dm3] 2L_7017479_SNP [dm6]	C	T	1.272e^-4	0.799	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
3R	3159932	3R_3159932_SNP [dm3] 3R_7334210_SNP [dm6]	T	G	1.275e^-4	0.799	INTERGENIC
3R	25410232	3R_25410232_SNP [dm3] 3R_29584510_SNP [dm6]	G	C	1.283e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10711017	2R_10711017_SNP [dm3] 2R_14823512_SNP [dm6]	C	A	1.285e^-4	0.799	DOWNSTREAM CR45329 INTERGENIC
2L	13950997	2L_13950997_SNP [dm3] 2L_13950997_SNP [dm6]	G	C	1.286e^-4	0.799	INTRON Ance-3
X	4362631	X_4362631_SNP [dm3] X_4468598_SNP [dm6]	G	A	1.287e^-4	0.799	INTRON bi & 1 other	TF binding site mE1_TFBS_chinmo
2R	10896422	2R_10896422_SNP [dm3] 2R_15008917_SNP [dm6]	C	A	1.288e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19972279	2R_19972279_SNP [dm3] 2R_24084756_SNP [dm6]	A	C	1.296e^-4	0.799	SYNONYMOUS_CODING CG16786
3L	24170609	3L_24170609_SNP [dm3] 3L_24177509_SNP [dm6]	C	T	1.297e^-4	0.799	INTRON Snap25
X	18910198	X_18910198_SNP [dm3] X_19016165_SNP [dm6]	T	C	1.300e^-4	0.799	INTRON CG43759
3L	18029418	3L_18029418_SNP [dm3] 3L_18036318_SNP [dm6]	G	A	1.302e^-4	0.799	INTRON Eip75B
3R	8772269	3R_8772269_SNP [dm3] 3R_12946547_SNP [dm6]	A	G	1.308e^-4	0.799	INTERGENIC
2L	10516131	2L_10516131_SNP [dm3] 2L_10516131_SNP [dm6]	T	A	1.322e^-4	0.799	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
3R	10202348	3R_10202348_SNP [dm3] 3R_14376626_SNP [dm6]	A	T	1.326e^-4	0.799	EXON CR44943	TF binding site BDTNP1_TFBS_dl
3R	26113058	3R_26113058_SNP [dm3] 3R_30287336_SNP [dm6]	G	A	1.328e^-4	0.799	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16267112	3L_16267112_SNP [dm3] 3L_16274012_SNP [dm6]	T	C	1.330e^-4	0.799	DOWNSTREAM CG13066 INTERGENIC
2R	16329149	2R_16329149_SNP [dm3] 2R_20441644_SNP [dm6]	G	A	1.334e^-4	0.799	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3R	17390542	3R_17390542_INS [dm3] 3R_21564820_INS [dm6]	C	TGT	1.339e^-4	0.799	INTERGENIC
X	12379131	X_12379131_SNP [dm3] X_12485098_SNP [dm6]	G	A	1.340e^-4	0.799	INTERGENIC
2R	4926372	2R_4926372_SNP [dm3] 2R_9038867_SNP [dm6]	G	A	1.356e^-4	0.799	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5015330	3R_5015330_SNP [dm3] 3R_9189608_SNP [dm6]	G	A	1.364e^-4	0.799	INTRON pum
3L	7836769	3L_7836769_SNP [dm3] 3L_7843669_SNP [dm6]	C	G	1.365e^-4	0.799	INTRON Pdp1	regulatory region REDfly_CRMs
2R	17289932	2R_17289932_DEL [dm3] 2R_21402427_DEL [dm6]	CACCCCTCTCC...	C	1.366e^-4	0.799	INTRON Sdc
2R	7322763	2R_7322763_SNP [dm3] 2R_11435258_SNP [dm6]	C	A	1.368e^-4	0.799	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_ttk
3L	5646603	3L_5646603_SNP [dm3] 3L_5653503_SNP [dm6]	G	A	1.370e^-4	0.799	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3191300	X_3191300_SNP [dm3] X_3297267_SNP [dm6]	T	A	1.388e^-4	0.799	INTRON dnc
3R	23184792	3R_23184792_SNP [dm3] 3R_27359070_SNP [dm6]	T	C	1.397e^-4	0.799	UPSTREAM CG42534 INTRON CG42534
2R	17155708	2R_17155708_DEL [dm3] 2R_21268203_DEL [dm6]	AGAAGTAAGTGC...	T	1.403e^-4	0.799	UPSTREAM CG30393 INTRON Rgk3
3L	11756563	3L_11756563_SNP [dm3] 3L_11763463_SNP [dm6]	G	A	1.406e^-4	0.799	INTRON CG6024
2L	14972060	2L_14972060_SNP [dm3] 2L_14972060_SNP [dm6]	T	G	1.412e^-4	0.799	UTR_5_PRIME CG42313
2R	17155839	2R_17155839_SNP [dm3] 2R_21268334_SNP [dm6]	A	T	1.421e^-4	0.799	UPSTREAM CG30393 INTRON Rgk3
3R	9429462	3R_9429462_SNP [dm3] 3R_13603740_SNP [dm6]	C	T	1.422e^-4	0.799	INTERGENIC
2R	7043439	2R_7043439_SNP [dm3] 2R_11155934_SNP [dm6]	G	A	1.424e^-4	0.799	DOWNSTREAM CG13230 INTRON CG13229
3L	4780940	3L_4780940_SNP [dm3] 3L_4780940_SNP [dm6]	C	T	1.424e^-4	0.799	INTRON RhoGEF64C
2L	11016585	2L_11016585_SNP [dm3] 2L_11016585_SNP [dm6]	T	A	1.431e^-4	0.799	UPSTREAM CG14913 DOWNSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3R	21650264	3R_21650264_SNP [dm3] 3R_25824542_SNP [dm6]	G	A	1.437e^-4	0.799	EXON CR44949
2L	6246165	2L_6246165_SNP [dm3] 2L_6246165_SNP [dm6]	G	A	1.441e^-4	0.799	INTERGENIC
3L	4176697	3L_4176697_SNP [dm3] 3L_4176697_SNP [dm6]	C	T	1.443e^-4	0.799	SYNONYMOUS_CODING Teh4 INTRON CG18675
X	3738697	X_3738697_SNP [dm3] X_3844664_SNP [dm6]	G	T	1.447e^-4	0.799	INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	12984799	3R_12984799_SNP [dm3] 3R_17159077_SNP [dm6]	G	A	1.454e^-4	0.799	SYNONYMOUS_CODING Mur89F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22855030	3L_22855030_SNP [dm3] 3L_22861930_SNP [dm6]	T	C	1.455e^-4	0.799	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	5666812	3L_5666812_SNP [dm3] 3L_5673712_SNP [dm6]	C	G	1.458e^-4	0.799	INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2583848	3L_2583848_SNP [dm3] 3L_2583848_SNP [dm6]	G	A	1.459e^-4	0.799	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5432392	3R_5432392_SNP [dm3] 3R_9606670_SNP [dm6]	C	G	1.466e^-4	0.799	INTRON CG8312
2R	6453811	2R_6453811_SNP [dm3] 2R_10566306_SNP [dm6]	T	C	1.467e^-4	0.799	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	13578860	2R_13578860_SNP [dm3] 2R_17691355_SNP [dm6]	C	G	1.469e^-4	0.799	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8407365	3L_8407365_SNP [dm3] 3L_8414265_SNP [dm6]	C	T	1.470e^-4	0.799	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm
2L	12403758	2L_12403758_SNP [dm3] 2L_12403758_SNP [dm6]	G	T	1.474e^-4	0.799	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
3R	19036687	3R_19036687_DEL [dm3] 3R_23210965_DEL [dm6]	GG	G	1.477e^-4	0.799	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1674174	3L_1674174_SNP [dm3] 3L_1674174_SNP [dm6]	T	A	1.477e^-4	0.799	UPSTREAM CG7991 INTERGENIC
2R	18259797	2R_18259797_SNP [dm3] 2R_22372292_SNP [dm6]	A	G	1.484e^-4	0.799	INTRON Liprin-gamma
3R	13573239	3R_13573239_SNP [dm3] 3R_17747517_SNP [dm6]	G	A	1.499e^-4	0.799	DOWNSTREAM TyrRII INTERGENIC
2L	12904183	2L_12904183_SNP [dm3] 2L_12904183_SNP [dm6]	C	T	1.514e^-4	0.799	INTERGENIC
2R	4362959	2R_4362959_DEL [dm3] 2R_8475454_DEL [dm6]	GTTG	G	1.514e^-4	0.799	CODON_DELETION mtt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4370397	2L_4370397_SNP [dm3] 2L_4370397_SNP [dm6]	C	T	1.515e^-4	0.799	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1844570	2R_1844570_SNP [dm3] 2R_5957065_SNP [dm6]	A	C	1.516e^-4	0.799	UPSTREAM CG7882 INTERGENIC
2L	12138301	2L_12138301_SNP [dm3] 2L_12138301_SNP [dm6]	C	G	1.516e^-4	0.799	SYNONYMOUS_CODING Gr33a
3R	14875617	3R_14875617_SNP [dm3] 3R_19049895_SNP [dm6]	C	T	1.519e^-4	0.799	SYNONYMOUS_CODING cdi
3L	6664671	3L_6664671_SNP [dm3] 3L_6671571_SNP [dm6]	C	T	1.524e^-4	0.799	INTERGENIC
3L	22113010	3L_22113010_SNP [dm3] 3L_22119910_SNP [dm6]	T	C	1.533e^-4	0.799	INTERGENIC
2L	14342000	2L_14342000_SNP [dm3] 2L_14342000_SNP [dm6]	A	G	1.536e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	7786348	3L_7786348_SNP [dm3] 3L_7793248_SNP [dm6]	A	T	1.539e^-4	0.799	INTRON CG32369
3R	8358466	3R_8358466_SNP [dm3] 3R_12532744_SNP [dm6]	T	C	1.541e^-4	0.799	INTRON Octbeta3R
X	9199334	X_9199334_SNP [dm3] X_9305301_SNP [dm6]	G	T	1.550e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23963235	3R_23963235_SNP [dm3] 3R_28137513_SNP [dm6]	G	T	1.550e^-4	0.799	INTERGENIC
X	11548327	X_11548327_SNP [dm3] X_11654294_SNP [dm6]	C	T	1.561e^-4	0.799	INTRON Ptp10D
3R	14083103	3R_14083103_SNP [dm3] 3R_18257381_SNP [dm6]	G	T	1.563e^-4	0.799	NON_SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
3R	20338941	3R_20338941_SNP [dm3] 3R_24513219_SNP [dm6]	G	A	1.582e^-4	0.799	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2	TF binding site BDTNP1_TFBS_dl
2L	12904840	2L_12904840_SNP [dm3] 2L_12904840_SNP [dm6]	G	T	1.595e^-4	0.799	INTERGENIC
3R	8772270	3R_8772270_SNP [dm3] 3R_12946548_SNP [dm6]	T	G	1.597e^-4	0.799	INTERGENIC
2L	11453383	2L_11453383_SNP [dm3] 2L_11453383_SNP [dm6]	T	C	1.597e^-4	0.799	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	10385453	3L_10385453_SNP [dm3] 3L_10392353_SNP [dm6]	C	T	1.598e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	13165583	3R_13165583_SNP [dm3] 3R_17339861_SNP [dm6]	G	C	1.600e^-4	0.799	INTRON beat-IIa
3R	14056190	3R_14056190_SNP [dm3] 3R_18230468_SNP [dm6]	G	A	1.601e^-4	0.799	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	12980143	3R_12980143_SNP [dm3] 3R_17154421_SNP [dm6]	G	T	1.606e^-4	0.799	SYNONYMOUS_CODING Mur89F DOWNSTREAM CG5292	TF binding site mE1_TFBS_cad
X	5108349	X_5108349_SNP [dm3] X_5214316_SNP [dm6]	G	T	1.607e^-4	0.799	INTRON CG15465 & 1 other
2R	9427913	2R_9427913_SNP [dm3] 2R_13540408_SNP [dm6]	T	C	1.612e^-4	0.799	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
3L	5735551	3L_5735551_SNP [dm3] 3L_5742451_SNP [dm6]	T	A	1.623e^-4	0.799	UTR_3_PRIME sif INTRON sif
3L	20082334	3L_20082334_SNP [dm3] 3L_20089234_SNP [dm6]	T	C	1.624e^-4	0.799	UPSTREAM sNPF-R INTERGENIC
3R	26118333	3R_26118333_SNP [dm3] 3R_30292611_SNP [dm6]	G	A	1.625e^-4	0.799	INTRON hdc
X	7470127	X_7470127_SNP [dm3] X_7576094_SNP [dm6]	T	C	1.635e^-4	0.799	SYNONYMOUS_CODING CG11369	regulatory region REDfly_CRMs
3L	9554429	3L_9554429_SNP [dm3] 3L_9561329_SNP [dm6]	G	A	1.635e^-4	0.799	INTRON CG42673
2L	3529742	2L_3529742_DEL [dm3] 2L_3529742_DEL [dm6]	TAGATACT	T	1.636e^-4	0.799	INTRON Spindly	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	21711380	2L_21711380_SNP [dm3] 2L_21711380_SNP [dm6]	T	C	1.646e^-4	0.799	SYNONYMOUS_CODING CG31619	TF binding site mE1_TFBS_HSA
2R	9866166	2R_9866166_SNP [dm3] 2R_13978661_SNP [dm6]	A	C	1.651e^-4	0.799	INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7407787	3L_7407787_SNP [dm3] 3L_7414687_SNP [dm6]	G	T	1.653e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10578273	3L_10578273_DEL [dm3] 3L_10585173_DEL [dm6]	AGCA	A	1.659e^-4	0.799	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13036773	3R_13036773_SNP [dm3] 3R_17211051_SNP [dm6]	C	T	1.659e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_inv
X	6386905	X_6386905_SNP [dm3] X_6492872_SNP [dm6]	C	T	1.662e^-4	0.799	INTRON CG42340
2L	14969196	2L_14969196_SNP [dm3] 2L_14969196_SNP [dm6]	C	A	1.673e^-4	0.799	INTRON CG42313
2L	3530368	2L_3530368_DEL [dm3] 2L_3530368_DEL [dm6]	TTGCTCGCATTGT...	T	1.677e^-4	0.799	UPSTREAM Che-13 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15193507	3L_15193507_SNP [dm3] 3L_15200407_SNP [dm6]	A	G	1.682e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	12394136	3L_12394136_SNP [dm3] 3L_12401036_SNP [dm6]	G	A	1.687e^-4	0.799	NON_SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10375786	X_10375786_INS [dm3] X_10481753_INS [dm6]	G	GACCCACTCGTTG...	1.693e^-4	0.799	UTR_3_PRIME PPP4R2r DOWNSTREAM CG32687	TF binding site mE1_TFBS_cad
3R	25412892	3R_25412892_SNP [dm3] 3R_29587170_SNP [dm6]	T	A	1.710e^-4	0.799	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	1183548	2R_1183548_INS [dm3] 2R_5296043_INS [dm6]	T	TGT	1.714e^-4	0.799	DOWNSTREAM d4 INTERGENIC
2L	21164309	2L_21164309_SNP [dm3] 2L_21164309_SNP [dm6]	A	C	1.715e^-4	0.799	NON_SYNONYMOUS_CODING CG9246 UPSTREAM CR44910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8568256	2L_8568256_SNP [dm3] 2L_8568256_SNP [dm6]	G	A	1.718e^-4	0.799	INTRON Sema-1a
2L	12400691	2L_12400691_SNP [dm3] 2L_12400691_SNP [dm6]	A	G	1.719e^-4	0.799	SYNONYMOUS_CODING Pkd2
3R	13962364	3R_13962364_SNP [dm3] 3R_18136642_SNP [dm6]	G	A	1.726e^-4	0.799	INTERGENIC
3L	13375283	3L_13375283_SNP [dm3] 3L_13382183_SNP [dm6]	G	T	1.729e^-4	0.799	UPSTREAM CG14107 & 1 other INTERGENIC
3R	17865083	3R_17865083_SNP [dm3] 3R_22039361_SNP [dm6]	G	C	1.731e^-4	0.799	DOWNSTREAM pit INTERGENIC
2R	16371088	2R_16371088_SNP [dm3] 2R_20483583_SNP [dm6]	A	T	1.735e^-4	0.799	INTERGENIC
3L	9745899	3L_9745899_SNP [dm3] 3L_9752799_SNP [dm6]	C	A	1.742e^-4	0.799	INTRON CG42268
2R	7043279	2R_7043279_SNP [dm3] 2R_11155774_SNP [dm6]	T	C	1.743e^-4	0.799	DOWNSTREAM CG13230 INTRON CG13229
2L	11397545	2L_11397545_SNP [dm3] 2L_11397545_SNP [dm6]	A	G	1.751e^-4	0.799	INTERGENIC	regulatory region REDfly_CRMs
X	13040749	X_13040749_SNP [dm3] X_13146716_SNP [dm6]	T	C	1.755e^-4	0.799	INTRON CG32645
3R	25976746	3R_25976746_SNP [dm3] 3R_30151024_SNP [dm6]	C	A	1.763e^-4	0.799	INTERGENIC
2L	4329695	2L_4329695_SNP [dm3] 2L_4329695_SNP [dm6]	C	T	1.771e^-4	0.799	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
2R	18315191	2R_18315191_DEL [dm3] 2R_22427686_DEL [dm6]	TT	T	1.773e^-4	0.799	SPLICE_SITE_REGION ppk12 UPSTREAM CG10344 INTRON ppk12
2L	3345475	2L_3345475_SNP [dm3] 2L_3345475_SNP [dm6]	G	A	1.774e^-4	0.799	INTRON E23
X	12293708	X_12293708_SNP [dm3] X_12399675_SNP [dm6]	T	C	1.781e^-4	0.799	INTERGENIC
2R	16756950	2R_16756950_SNP [dm3] 2R_20869445_SNP [dm6]	T	A	1.789e^-4	0.799	UPSTREAM IM4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15011961	3L_15011961_SNP [dm3] 3L_15018861_SNP [dm6]	G	A	1.790e^-4	0.799	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12272153	X_12272153_SNP [dm3] X_12378120_SNP [dm6]	G	A	1.790e^-4	0.799	UPSTREAM Ir11a INTERGENIC
2L	6903196	2L_6903196_SNP [dm3] 2L_6903196_SNP [dm6]	C	T	1.791e^-4	0.799	INTRON Nlg2
3R	8552770	3R_8552770_SNP [dm3] 3R_12727048_SNP [dm6]	G	A	1.807e^-4	0.799	UPSTREAM CR44231 INTERGENIC
3L	2780831	3L_2780831_SNP [dm3] 3L_2780831_SNP [dm6]	T	C	1.808e^-4	0.799	UPSTREAM mRpS35 DOWNSTREAM Atg2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	5646632	3L_5646632_SNP [dm3] 3L_5653532_SNP [dm6]	T	G	1.814e^-4	0.799	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7910904	X_7910904_SNP [dm3] X_8016871_SNP [dm6]	C	A	1.816e^-4	0.799	INTRON Tbh
X	14699647	X_14699647_SNP [dm3] X_14805614_SNP [dm6]	A	G	1.824e^-4	0.799	INTRON rut
3R	22743696	3R_22743696_SNP [dm3] 3R_26917974_SNP [dm6]	C	G	1.825e^-4	0.799	INTRON sda
2L	7763643	2L_7763643_SNP [dm3] 2L_7763643_SNP [dm6]	A	G	1.833e^-4	0.799	SYNONYMOUS_CODING CG7196 UPSTREAM CG7196
3R	14056127	3R_14056127_SNP [dm3] 3R_18230405_SNP [dm6]	G	A	1.834e^-4	0.799	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	4551553	3L_4551553_SNP [dm3] 3L_4551553_SNP [dm6]	A	C	1.838e^-4	0.799	SYNONYMOUS_CODING CG11357	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23270618	3R_23270618_SNP [dm3] 3R_27444896_SNP [dm6]	C	T	1.840e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10939996	2L_10939996_SNP [dm3] 2L_10939996_SNP [dm6]	G	C	1.846e^-4	0.799	INTRON dpr2
3R	14437965	3R_14437965_SNP [dm3] 3R_18612243_SNP [dm6]	T	A	1.852e^-4	0.799	INTRON qin & 1 other
3L	8780521	3L_8780521_SNP [dm3] 3L_8787421_SNP [dm6]	C	T	1.856e^-4	0.799	DOWNSTREAM CG5804 INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	801302	2L_801302_SNP [dm3] 2L_801302_SNP [dm6]	A	C	1.858e^-4	0.799	DOWNSTREAM CR45259 INTERGENIC
2L	12798114	2L_12798114_SNP [dm3] 2L_12798114_SNP [dm6]	C	A	1.860e^-4	0.799	INTERGENIC
3R	13466441	3R_13466441_SNP [dm3] 3R_17640719_SNP [dm6]	C	T	1.864e^-4	0.799	INTRON CG43175
3R	19534395	3R_19534395_SNP [dm3] 3R_23708673_SNP [dm6]	T	G	1.872e^-4	0.799	DOWNSTREAM CG31414 INTERGENIC
3L	21638782	3L_21638782_DEL [dm3] 3L_21645682_DEL [dm6]	GAACACTATGAGAGGTT...	G	1.896e^-4	0.799	INTRON CG43980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	11053554	X_11053554_SNP [dm3] X_11159521_SNP [dm6]	A	G	1.896e^-4	0.799	SYNONYMOUS_CODING CG32668 UPSTREAM Dlic INTRON Dlic	TF binding site mE1_TFBS_chinmo
3L	5734236	3L_5734236_SNP [dm3] 3L_5741136_SNP [dm6]	C	T	1.906e^-4	0.799	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12904839	2L_12904839_SNP [dm3] 2L_12904839_SNP [dm6]	T	C	1.907e^-4	0.799	INTERGENIC
X	7944331	X_7944331_SNP [dm3] X_8050298_SNP [dm6]	T	A	1.911e^-4	0.799	INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25976747	3R_25976747_SNP [dm3] 3R_30151025_SNP [dm6]	C	A	1.919e^-4	0.799	INTERGENIC
2L	19674006	2L_19674006_SNP [dm3] 2L_19674006_SNP [dm6]	C	T	1.924e^-4	0.799	INTRON Lar
3R	16438091	3R_16438091_SNP [dm3] 3R_20612369_SNP [dm6]	C	T	1.926e^-4	0.799	UTR_3_PRIME bon & 1 other DOWNSTREAM bon
3L	19333850	3L_19333850_SNP [dm3] 3L_19340750_SNP [dm6]	G	A	1.927e^-4	0.799	UTR_3_PRIME CG32206
3L	4780941	3L_4780941_SNP [dm3] 3L_4780941_SNP [dm6]	T	A	1.929e^-4	0.799	INTRON RhoGEF64C
X	12675979	X_12675979_SNP [dm3] X_12781946_SNP [dm6]	C	A	1.939e^-4	0.799	INTRON CG32647
2L	7726224	2L_7726224_SNP [dm3] 2L_7726224_SNP [dm6]	T	A	1.941e^-4	0.799	UTR_5_PRIME CG13795 DOWNSTREAM CG13796
X	12272151	X_12272151_SNP [dm3] X_12378118_SNP [dm6]	G	A	1.945e^-4	0.799	UPSTREAM Ir11a INTERGENIC
3L	24160183	3L_24160183_SNP [dm3] 3L_24167083_SNP [dm6]	C	T	1.947e^-4	0.799	INTRON Snap25
2R	18055100	2R_18055100_SNP [dm3] 2R_22167595_SNP [dm6]	G	A	1.949e^-4	0.799	INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15297927	2R_15297927_SNP [dm3] 2R_19410422_SNP [dm6]	T	C	1.954e^-4	0.799	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
X	3191308	X_3191308_SNP [dm3] X_3297275_SNP [dm6]	C	A	1.954e^-4	0.799	INTRON dnc
3R	7493797	3R_7493797_SNP [dm3] 3R_11668075_SNP [dm6]	T	C	1.962e^-4	0.799	SYNONYMOUS_CODING CG42327	TF binding site mE1_TFBS_sens
3L	2552346	3L_2552346_SNP [dm3] 3L_2552346_SNP [dm6]	G	C	1.969e^-4	0.799	INTRON Spn	TF binding site BDTNP1_TFBS_dl
2L	12903994	2L_12903994_SNP [dm3] 2L_12903994_SNP [dm6]	G	C	1.972e^-4	0.799	INTERGENIC
2R	16757149	2R_16757149_SNP [dm3] 2R_20869644_SNP [dm6]	C	A	1.977e^-4	0.799	UPSTREAM IM4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17499327	3L_17499327_SNP [dm3] 3L_17506227_SNP [dm6]	T	C	1.980e^-4	0.799	INTRON Oatp74D
2L	5332460	2L_5332460_SNP [dm3] 2L_5332460_SNP [dm6]	T	A	1.982e^-4	0.799	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19330925	2R_19330925_SNP [dm3] 2R_23443402_SNP [dm6]	T	A	1.982e^-4	0.799	UPSTREAM CG43795 INTERGENIC
2L	11791201	2L_11791201_SNP [dm3] 2L_11791201_SNP [dm6]	A	G	1.995e^-4	0.799	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14932
3R	23811181	3R_23811181_SNP [dm3] 3R_27985459_SNP [dm6]	A	C	1.995e^-4	0.799	INTRON betaTub97EF
3R	8887785	3R_8887785_SNP [dm3] 3R_13062063_SNP [dm6]	T	C	2.001e^-4	0.799	UPSTREAM sim INTRON sim
2R	17289921	2R_17289921_DEL [dm3] 2R_21402416_DEL [dm6]	CAC	C	2.017e^-4	0.799	INTRON Sdc
3R	16808299	3R_16808299_DEL [dm3] 3R_20982577_DEL [dm6]	GG	G	2.031e^-4	0.799	INTRON Calx
2L	3659727	2L_3659727_SNP [dm3] 2L_3659727_SNP [dm6]	A	G	2.034e^-4	0.799	INTERGENIC
X	12675978	X_12675978_SNP [dm3] X_12781945_SNP [dm6]	C	T	2.043e^-4	0.799	INTRON CG32647
3R	16730138	3R_16730138_SNP [dm3] 3R_20904416_SNP [dm6]	C	T	2.043e^-4	0.799	SYNONYMOUS_CODING CG5621 DOWNSTREAM TotX
3R	19406716	3R_19406716_DEL [dm3] 3R_23580994_DEL [dm6]	AGTTATTTAAGGAATACTTG...	A	2.074e^-4	0.799	DOWNSTREAM beat-IV INTERGENIC
3L	17783607	3L_17783607_DEL [dm3] 3L_17790507_DEL [dm6]	AAAGCCGGCGCTCCTTGTGA...	A	2.081e^-4	0.799	DOWNSTREAM CG42815 INTERGENIC
2L	11200910	2L_11200910_SNP [dm3] 2L_11200910_SNP [dm6]	A	C	2.090e^-4	0.799	INTRON Ca-beta
X	21329497	X_21329497_DEL [dm3] X_21458470_DEL [dm6]	GAAGCAAG	G	2.091e^-4	0.799	UPSTREAM CG42343 INTERGENIC
3R	21650265	3R_21650265_SNP [dm3] 3R_25824543_SNP [dm6]	G	A	2.092e^-4	0.799	EXON CR44949
2L	11609714	2L_11609714_SNP [dm3] 2L_11609714_SNP [dm6]	C	T	2.095e^-4	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3L	6760905	3L_6760905_SNP [dm3] 3L_6767805_SNP [dm6]	C	A	2.105e^-4	0.799	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	6103599	X_6103599_SNP [dm3] X_6209566_SNP [dm6]	T	C	2.107e^-4	0.799	INTERGENIC
2R	2398348	2R_2398348_SNP [dm3] 2R_6510843_SNP [dm6]	C	A	2.111e^-4	0.799	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	4279111	2R_4279111_SNP [dm3] 2R_8391606_SNP [dm6]	T	G	2.116e^-4	0.799	SYNONYMOUS_CODING pdm3	TF binding site mE1_TFBS_chinmo
2L	802602	2L_802602_SNP [dm3] 2L_802602_SNP [dm6]	A	G	2.120e^-4	0.799	INTERGENIC
2L	4824646	2L_4824646_SNP [dm3] 2L_4824646_SNP [dm6]	A	C	2.120e^-4	0.799	INTRON CG15628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17929688	3R_17929688_SNP [dm3] 3R_22103966_SNP [dm6]	A	G	2.123e^-4	0.799	INTRON CG5778 & 1 other
2L	1782357	2L_1782357_SNP [dm3] 2L_1782357_SNP [dm6]	A	T	2.124e^-4	0.799	INTERGENIC	regulatory region REDfly_CRMs
3R	16730606	3R_16730606_SNP [dm3] 3R_20904884_SNP [dm6]	G	T	2.132e^-4	0.799	DOWNSTREAM TotX INTRON CG5621
3L	12262671	3L_12262671_SNP [dm3] 3L_12269571_SNP [dm6]	A	G	2.132e^-4	0.799	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
3R	13036774	3R_13036774_SNP [dm3] 3R_17211052_SNP [dm6]	A	G	2.139e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_inv
3L	24169589	3L_24169589_SNP [dm3] 3L_24176489_SNP [dm6]	T	C	2.142e^-4	0.799	INTRON Snap25
2R	19184482	2R_19184482_SNP [dm3] 2R_23296959_SNP [dm6]	A	T	2.145e^-4	0.799	INTERGENIC
3R	26113462	3R_26113462_SNP [dm3] 3R_30287740_SNP [dm6]	T	C	2.147e^-4	0.799	INTRON hdc
2L	12797646	2L_12797646_SNP [dm3] 2L_12797646_SNP [dm6]	C	T	2.149e^-4	0.799	INTERGENIC
3L	12052088	3L_12052088_SNP [dm3] 3L_12058988_SNP [dm6]	C	T	2.153e^-4	0.799	INTRON rols
2L	4173414	2L_4173414_SNP [dm3] 2L_4173414_SNP [dm6]	A	T	2.155e^-4	0.799	INTERGENIC
3L	5895007	3L_5895007_SNP [dm3] 3L_5901907_SNP [dm6]	A	G	2.160e^-4	0.799	SYNONYMOUS_CODING QC DOWNSTREAM CG32409 & 1 other
2L	12796966	2L_12796966_SNP [dm3] 2L_12796966_SNP [dm6]	C	G	2.164e^-4	0.799	INTERGENIC
2L	5332487	2L_5332487_SNP [dm3] 2L_5332487_SNP [dm6]	T	A	2.167e^-4	0.799	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2398653	2R_2398653_SNP [dm3] 2R_6511148_SNP [dm6]	C	T	2.170e^-4	0.799	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	22745853	3R_22745853_SNP [dm3] 3R_26920131_SNP [dm6]	C	G	2.177e^-4	0.799	INTRON sda
X	5473822	X_5473822_SNP [dm3] X_5579789_SNP [dm6]	A	T	2.180e^-4	0.799	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6853735	2R_6853735_SNP [dm3] 2R_10966230_SNP [dm6]	A	C	2.192e^-4	0.799	INTERGENIC
3L	18034774	3L_18034774_SNP [dm3] 3L_18041674_SNP [dm6]	G	A	2.200e^-4	0.799	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2L	11602950	2L_11602950_SNP [dm3] 2L_11602950_SNP [dm6]	C	A	2.205e^-4	0.799	INTRON kek2
2L	814651	2L_814651_SNP [dm3] 2L_814651_SNP [dm6]	G	A	2.209e^-4	0.799	NON_SYNONYMOUS_CODING Saf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19163181	2R_19163181_SNP [dm3] 2R_23275658_SNP [dm6]	A	G	2.213e^-4	0.799	UPSTREAM ord INTERGENIC
X	6334210	X_6334210_SNP [dm3] X_6440177_SNP [dm6]	C	T	2.214e^-4	0.799	INTRON CG42340
2R	2407275	2R_2407275_SNP [dm3] 2R_6519770_SNP [dm6]	T	A	2.217e^-4	0.799	INTRON jing
3R	11551441	3R_11551441_SNP [dm3] 3R_15725719_SNP [dm6]	A	G	2.222e^-4	0.799	INTERGENIC
2R	19917456	2R_19917456_SNP [dm3] 2R_24029933_SNP [dm6]	G	A	2.222e^-4	0.799	NON_SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	13120455	2L_13120455_SNP [dm3] 2L_13120455_SNP [dm6]	G	C	2.227e^-4	0.799	UTR_3_PRIME CG43050
3L	8102452	3L_8102452_SNP [dm3] 3L_8109352_SNP [dm6]	C	T	2.230e^-4	0.799	SYNONYMOUS_CODING fan DOWNSTREAM Ect4	TF binding site mE1_TFBS_bab1
2L	14931599	2L_14931599_SNP [dm3] 2L_14931599_SNP [dm6]	G	A	2.231e^-4	0.799	INTRON CG42313
2L	21166709	2L_21166709_SNP [dm3] 2L_21166709_SNP [dm6]	T	A	2.234e^-4	0.799	SYNONYMOUS_CODING CG43345 UTR_5_PRIME CG43346 UPSTREAM CG43346 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15878028	3R_15878028_SNP [dm3] 3R_20052306_SNP [dm6]	T	G	2.234e^-4	0.799	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	7836742	3L_7836742_SNP [dm3] 3L_7843642_SNP [dm6]	A	G	2.235e^-4	0.799	INTRON Pdp1	regulatory region REDfly_CRMs
X	6387071	X_6387071_SNP [dm3] X_6493038_SNP [dm6]	T	A	2.242e^-4	0.799	INTRON CG42340
2R	19036615	2R_19036615_SNP [dm3] 2R_23149092_SNP [dm6]	A	G	2.243e^-4	0.799	INTERGENIC
3R	26121930	3R_26121930_SNP [dm3] 3R_30296208_SNP [dm6]	G	A	2.251e^-4	0.799	INTRON hdc
3L	15116083	3L_15116083_SNP [dm3] 3L_15122983_SNP [dm6]	G	A	2.254e^-4	0.799	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2R	17305003	2R_17305003_SNP [dm3] 2R_21417498_SNP [dm6]	C	G	2.257e^-4	0.799	UPSTREAM Sdc INTRON Sdc
3L	13203919	3L_13203919_SNP [dm3] 3L_13210819_SNP [dm6]	G	A	2.258e^-4	0.799	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18593594	2L_18593594_SNP [dm3] 2L_18593594_SNP [dm6]	A	G	2.270e^-4	0.799	SPLICE_SITE_REGION CG15160 INTRON CG15160
2L	9885414	2L_9885414_SNP [dm3] 2L_9885414_SNP [dm6]	C	A	2.271e^-4	0.799	INTRON nAChRalpha6
3L	11347682	3L_11347682_SNP [dm3] 3L_11354582_SNP [dm6]	T	C	2.272e^-4	0.799	INTERGENIC
3R	26114364	3R_26114364_SNP [dm3] 3R_30288642_SNP [dm6]	G	A	2.278e^-4	0.799	INTRON hdc
3R	6155925	3R_6155925_INS [dm3] 3R_10330203_INS [dm6]	A	ACA	2.282e^-4	0.799	INTRON Bruce
3R	2660110	3R_2660110_SNP [dm3] 3R_6834388_SNP [dm6]	G	T	2.289e^-4	0.799	INTRON Scr	regulatory region REDfly_CRMs
X	7778295	X_7778295_SNP [dm3] X_7884262_SNP [dm6]	T	A	2.296e^-4	0.799	UPSTREAM Ir7g & 1 other INTERGENIC
3L	17787854	3L_17787854_SNP [dm3] 3L_17794754_SNP [dm6]	G	A	2.300e^-4	0.799	SYNONYMOUS_CODING CG42816	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17787878	3L_17787878_SNP [dm3] 3L_17794778_SNP [dm6]	C	T	2.300e^-4	0.799	SPLICE_SITE_REGION CG42816 INTRON CG42816	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12031017	3L_12031017_SNP [dm3] 3L_12037917_SNP [dm6]	A	T	2.306e^-4	0.799	INTRON rols
X	15284765	X_15284765_SNP [dm3] X_15390732_SNP [dm6]	T	A	2.307e^-4	0.799	SYNONYMOUS_CODING Cngl
2L	802595	2L_802595_SNP [dm3] 2L_802595_SNP [dm6]	A	C	2.316e^-4	0.799	INTERGENIC
3R	23990684	3R_23990684_DEL [dm3] 3R_28164962_DEL [dm6]	TTGCTTC	T	2.317e^-4	0.799	INTRON CG34354
2L	11609770	2L_11609770_SNP [dm3] 2L_11609770_SNP [dm6]	A	G	2.318e^-4	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3R	11422386	3R_11422386_SNP [dm3] 3R_15596664_SNP [dm6]	A	C	2.321e^-4	0.799	INTERGENIC
X	21027159	X_21027159_SNP [dm3] X_21156132_SNP [dm6]	A	G	2.323e^-4	0.799	DOWNSTREAM CR32511 EXON CR45499
2R	1843288	2R_1843288_SNP [dm3] 2R_5955783_SNP [dm6]	A	T	2.334e^-4	0.799	INTERGENIC
3R	26113536	3R_26113536_DEL [dm3] 3R_30287814_DEL [dm6]	TGG	T	2.343e^-4	0.799	INTRON hdc
2L	17508283	2L_17508283_SNP [dm3] 2L_17508283_SNP [dm6]	G	A	2.349e^-4	0.799	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2R	4313410	2R_4313410_SNP [dm3] 2R_8425905_SNP [dm6]	G	A	2.354e^-4	0.799	INTRON CSN7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18130601	2R_18130601_SNP [dm3] 2R_22243096_SNP [dm6]	T	C	2.358e^-4	0.799	UPSTREAM dve INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3859039	3L_3859039_SNP [dm3] 3L_3859039_SNP [dm6]	A	G	2.376e^-4	0.799	INTRON Awh	TF binding site mE1_TFBS_cad
X	5761971	X_5761971_SNP [dm3] X_5867938_SNP [dm6]	G	A	2.377e^-4	0.799	INTERGENIC
2R	10402162	2R_10402162_SNP [dm3] 2R_14514657_SNP [dm6]	T	G	2.395e^-4	0.799	INTRON Cpr51A & 1 other
3R	21637523	3R_21637523_INS [dm3] 3R_25811801_INS [dm6]	A	AAAAATTG	2.405e^-4	0.799	UPSTREAM CG17770 & 1 other DOWNSTREAM CG5024 INTERGENIC
2R	10437910	2R_10437910_SNP [dm3] 2R_14550405_SNP [dm6]	C	T	2.408e^-4	0.799	INTRON ttv
2L	9827403	2L_9827403_SNP [dm3] 2L_9827403_SNP [dm6]	T	A	2.410e^-4	0.799	INTRON nAChRalpha6
3R	11603975	3R_11603975_SNP [dm3] 3R_15778253_SNP [dm6]	A	G	2.411e^-4	0.799	DOWNSTREAM CG4525 INTERGENIC
2R	5785917	2R_5785917_SNP [dm3] 2R_9898412_SNP [dm6]	C	G	2.419e^-4	0.799	UTR_3_PRIME CG30007 DOWNSTREAM CG1441 & 1 other
3L	7469667	3L_7469667_SNP [dm3] 3L_7476567_SNP [dm6]	A	C	2.421e^-4	0.799	DOWNSTREAM CG43292 INTERGENIC
2L	6248297	2L_6248297_SNP [dm3] 2L_6248297_SNP [dm6]	G	C	2.427e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13810644	3R_13810644_DEL [dm3] 3R_17984922_DEL [dm6]	CGGTCCGAAATG...	C	2.433e^-4	0.799	INTRON cpo
2L	10340694	2L_10340694_SNP [dm3] 2L_10340694_SNP [dm6]	G	A	2.440e^-4	0.799	SYNONYMOUS_CODING SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl
3L	12356671	3L_12356671_SNP [dm3] 3L_12363571_SNP [dm6]	C	T	2.450e^-4	0.799	INTERGENIC
3R	18275994	3R_18275994_SNP [dm3] 3R_22450272_SNP [dm6]	T	C	2.454e^-4	0.799	INTRON CG34376	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	10415541	3L_10415541_SNP [dm3] 3L_10422441_SNP [dm6]	A	G	2.454e^-4	0.799	INTERGENIC
X	18910047	X_18910047_INS [dm3] X_19016014_INS [dm6]	T	TACACAAT	2.460e^-4	0.799	INTRON CG43759	TF binding site mE1_TFBS_HSA
2L	21095946	2L_21095946_SNP [dm3] 2L_21095946_SNP [dm6]	G	A	2.462e^-4	0.799	UPSTREAM CG34136 INTRON CG12050
3R	26115286	3R_26115286_INS [dm3] 3R_30289564_INS [dm6]	T	TC	2.471e^-4	0.799	INTRON hdc
3L	13206624	3L_13206624_SNP [dm3] 3L_13213524_SNP [dm6]	G	C	2.474e^-4	0.799	UPSTREAM tRNA:CR32127 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3232433	2L_3232433_SNP [dm3] 2L_3232433_SNP [dm6]	T	C	2.483e^-4	0.799	INTERGENIC
3L	3587147	3L_3587147_SNP [dm3] 3L_3587147_SNP [dm6]	A	C	2.490e^-4	0.799	INTRON Eip63E
3R	9170577	3R_9170577_SNP [dm3] 3R_13344855_SNP [dm6]	A	C	2.490e^-4	0.799	UTR_3_PRIME PK2-R1
3L	7294320	3L_7294320_SNP [dm3] 3L_7301220_SNP [dm6]	G	A	2.494e^-4	0.799	INTRON unc-13-4A
3L	13739678	3L_13739678_SNP [dm3] 3L_13746578_SNP [dm6]	C	T	2.497e^-4	0.799	INTRON bru-3
3L	16270249	3L_16270249_INS [dm3] 3L_16277149_INS [dm6]	A	TGGTGCAACCAC...	2.507e^-4	0.799	UPSTREAM CG13065 INTERGENIC	TF binding site mE1_TFBS_cad
3L	19140705	3L_19140705_SNP [dm3] 3L_19147605_SNP [dm6]	T	C	2.512e^-4	0.799	UPSTREAM fz2 INTRON fz2
X	15205272	X_15205272_SNP [dm3] X_15311239_SNP [dm6]	T	A	2.515e^-4	0.799	INTRON gce	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13490179	3L_13490179_SNP [dm3] 3L_13497079_SNP [dm6]	T	C	2.520e^-4	0.799	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14266859	X_14266859_SNP [dm3] X_14372826_SNP [dm6]	T	G	2.522e^-4	0.799	INTRON dpr8
X	6386792	X_6386792_SNP [dm3] X_6492759_SNP [dm6]	A	T	2.524e^-4	0.799	INTRON CG42340
2R	1879491	2R_1879491_DEL [dm3] 2R_5991986_DEL [dm6]	CTAAGTTAGATAACCGTATA...	C	2.530e^-4	0.799	UPSTREAM Src42A INTRON Src42A	TF binding site mE1_TFBS_Trl
X	20472221	X_20472221_SNP [dm3] X_20601194_SNP [dm6]	T	A	2.547e^-4	0.799	INTRON RunxA
3R	3605147	3R_3605147_SNP [dm3] 3R_7779425_SNP [dm6]	A	T	2.548e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk
2L	9930070	2L_9930070_SNP [dm3] 2L_9930070_SNP [dm6]	A	C	2.549e^-4	0.799	UTR_3_PRIME CG42366 UPSTREAM CG42367 INTRON CG42366	TF binding site mE1_TFBS_HSA
3R	9268136	3R_9268136_SNP [dm3] 3R_13442414_SNP [dm6]	G	T	2.549e^-4	0.799	DOWNSTREAM CR45679 INTERGENIC
3R	24061255	3R_24061255_SNP [dm3] 3R_28235533_SNP [dm6]	G	A	2.552e^-4	0.799	INTRON CG34354
2R	16854738	2R_16854738_SNP [dm3] 2R_20967233_SNP [dm6]	C	T	2.555e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20570646	X_20570646_SNP [dm3] X_20699619_SNP [dm6]	A	C	2.566e^-4	0.799	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	866923	3L_866923_SNP [dm3] 3L_866923_SNP [dm6]	T	C	2.576e^-4	0.799	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23413311	3R_23413311_SNP [dm3] 3R_27587589_SNP [dm6]	T	C	2.587e^-4	0.799	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12293710	X_12293710_DEL [dm3] X_12399677_DEL [dm6]	TG	A	2.587e^-4	0.799	INTERGENIC
3L	19043654	3L_19043654_SNP [dm3] 3L_19050554_SNP [dm6]	T	A	2.605e^-4	0.799	DOWNSTREAM Acp76A INTERGENIC
3R	27092029	3R_27092029_SNP [dm3] 3R_31266307_SNP [dm6]	C	T	2.613e^-4	0.799	SYNONYMOUS_CODING ppk24
2R	16810580	2R_16810580_SNP [dm3] 2R_20923075_SNP [dm6]	A	G	2.625e^-4	0.799	NON_SYNONYMOUS_CODING Rx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7287610	3R_7287610_SNP [dm3] 3R_11461888_SNP [dm6]	C	A	2.628e^-4	0.799	INTRON CG17230
2R	12391479	2R_12391479_SNP [dm3] 2R_16503974_SNP [dm6]	G	A	2.631e^-4	0.799	INTRON Sema-2a
3L	12805363	3L_12805363_SNP [dm3] 3L_12812263_SNP [dm6]	A	C	2.632e^-4	0.799	DOWNSTREAM CG10754 INTRON Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6248476	2L_6248476_SNP [dm3] 2L_6248476_SNP [dm6]	C	T	2.632e^-4	0.799	INTERGENIC
3L	4797495	3L_4797495_SNP [dm3] 3L_4797495_SNP [dm6]	T	C	2.659e^-4	0.799	INTERGENIC
2L	5339944	2L_5339944_SNP [dm3] 2L_5339944_SNP [dm6]	A	G	2.661e^-4	0.799	SYNONYMOUS_CODING CG12512	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26001618	3R_26001618_SNP [dm3] 3R_30175896_SNP [dm6]	C	T	2.668e^-4	0.799	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
X	10375337	X_10375337_SNP [dm3] X_10481304_SNP [dm6]	C	G	2.690e^-4	0.799	NON_SYNONYMOUS_CODING PPP4R2r DOWNSTREAM CG32687	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12795659	2L_12795659_INS [dm3] 2L_12795659_INS [dm6]	T	TTAAAAA	2.692e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15193538	3L_15193538_SNP [dm3] 3L_15200438_SNP [dm6]	G	C	2.695e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	20570666	X_20570666_INS [dm3] X_20699639_INS [dm6]	A	GTATGTGTG	2.700e^-4	0.799	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	802606	2L_802606_SNP [dm3] 2L_802606_SNP [dm6]	C	G	2.704e^-4	0.799	INTERGENIC
3L	9484164	3L_9484164_SNP [dm3] 3L_9491064_SNP [dm6]	G	T	2.709e^-4	0.799	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7798964	3L_7798964_SNP [dm3] 3L_7805864_SNP [dm6]	A	C	2.711e^-4	0.799	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16809633	2R_16809633_SNP [dm3] 2R_20922128_SNP [dm6]	T	C	2.711e^-4	0.799	INTRON Rx
3R	7132065	3R_7132065_DEL [dm3] 3R_11306343_DEL [dm6]	TT	T	2.713e^-4	0.799	UPSTREAM CR31386 INTERGENIC
X	15284678	X_15284678_SNP [dm3] X_15390645_SNP [dm6]	C	T	2.723e^-4	0.799	SYNONYMOUS_CODING Cngl
X	2108785	X_2108785_SNP [dm3] X_2214752_SNP [dm6]	T	A	2.724e^-4	0.799	UTR_3_PRIME Vinc UPSTREAM msta
3R	14083042	3R_14083042_SNP [dm3] 3R_18257320_SNP [dm6]	C	T	2.726e^-4	0.799	SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi
2L	1781814	2L_1781814_SNP [dm3] 2L_1781814_SNP [dm6]	G	C	2.727e^-4	0.799	INTERGENIC
3L	18481656	3L_18481656_SNP [dm3] 3L_18488556_SNP [dm6]	A	C	2.734e^-4	0.799	NON_SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
2L	21189414	2L_21189414_SNP [dm3] 2L_21189414_SNP [dm6]	T	G	2.739e^-4	0.799	INTRON Ret
3L	12147663	3L_12147663_SNP [dm3] 3L_12154563_SNP [dm6]	T	C	2.742e^-4	0.799	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
2L	7822263	2L_7822263_SNP [dm3] 2L_7822263_SNP [dm6]	T	C	2.751e^-4	0.799	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12539112	2L_12539112_SNP [dm3] 2L_12539112_SNP [dm6]	A	G	2.760e^-4	0.799	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	4586167	X_4586167_SNP [dm3] X_4692134_SNP [dm6]	A	G	2.760e^-4	0.799	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	3885863	2L_3885863_SNP [dm3] 2L_3885863_SNP [dm6]	T	C	2.764e^-4	0.799	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	11273448	X_11273448_SNP [dm3] X_11379415_SNP [dm6]	C	T	2.764e^-4	0.799	INTRON dlg1
X	18280553	X_18280553_DEL [dm3] X_18386520_DEL [dm6]	AGTTTA	T	2.766e^-4	0.799	UPSTREAM Tsf1 INTERGENIC
3R	13573240	3R_13573240_SNP [dm3] 3R_17747518_SNP [dm6]	G	A	2.767e^-4	0.799	DOWNSTREAM TyrRII INTERGENIC
X	7470032	X_7470032_SNP [dm3] X_7575999_SNP [dm6]	C	A	2.773e^-4	0.799	NON_SYNONYMOUS_CODING CG11369	regulatory region REDfly_CRMs
2L	21150008	2L_21150008_SNP [dm3] 2L_21150008_SNP [dm6]	C	T	2.784e^-4	0.799	INTERGENIC	transposable element FlyBase
2R	8861851	2R_8861851_SNP [dm3] 2R_12974346_SNP [dm6]	T	C	2.788e^-4	0.799	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17290005	2R_17290005_SNP [dm3] 2R_21402500_SNP [dm6]	G	T	2.792e^-4	0.799	INTRON Sdc
3R	11604297	3R_11604297_SNP [dm3] 3R_15778575_SNP [dm6]	T	G	2.794e^-4	0.799	DOWNSTREAM CG4525 INTERGENIC
3L	8551697	3L_8551697_SNP [dm3] 3L_8558597_SNP [dm6]	A	C	2.796e^-4	0.799	UTR_5_PRIME rhea INTRON rhea
3R	11239993	3R_11239993_SNP [dm3] 3R_15414271_SNP [dm6]	A	G	2.796e^-4	0.799	SYNONYMOUS_CODING Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27092544	3R_27092544_SNP [dm3] 3R_31266822_SNP [dm6]	G	A	2.798e^-4	0.799	INTRON ppk24
2L	14341948	2L_14341948_SNP [dm3] 2L_14341948_SNP [dm6]	C	T	2.801e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	10765795	3L_10765795_SNP [dm3] 3L_10772695_SNP [dm6]	A	T	2.803e^-4	0.799	INTRON CG43245	TF binding site mE1_TFBS_cad
2L	3530057	2L_3530057_SNP [dm3] 2L_3530057_SNP [dm6]	C	A	2.808e^-4	0.799	NON_SYNONYMOUS_CODING Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	3167223	3R_3167223_SNP [dm3] 3R_7341501_SNP [dm6]	T	A	2.810e^-4	0.799	INTERGENIC
2L	6794999	2L_6794999_SNP [dm3] 2L_6794999_SNP [dm6]	C	T	2.812e^-4	0.799	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	5721433	X_5721433_SNP [dm3] X_5827400_SNP [dm6]	A	G	2.824e^-4	0.799	INTRON CG15765
2L	17641264	2L_17641264_SNP [dm3] 2L_17641264_SNP [dm6]	A	G	2.833e^-4	0.799	INTERGENIC
2L	12812152	2L_12812152_SNP [dm3] 2L_12812152_SNP [dm6]	A	G	2.836e^-4	0.799	INTERGENIC
3R	10304650	3R_10304650_SNP [dm3] 3R_14478928_SNP [dm6]	G	A	2.838e^-4	0.799	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13822850	3R_13822850_SNP [dm3] 3R_17997128_SNP [dm6]	C	T	2.847e^-4	0.799	INTRON cpo
X	4244736	X_4244736_SNP [dm3] X_4350703_SNP [dm6]	A	T	2.858e^-4	0.799	INTRON norpA
3L	7996482	3L_7996482_SNP [dm3] 3L_8003382_SNP [dm6]	T	C	2.863e^-4	0.799	INTRON nmo
2L	12898121	2L_12898121_SNP [dm3] 2L_12898121_SNP [dm6]	A	C	2.865e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14341945	2L_14341945_SNP [dm3] 2L_14341945_SNP [dm6]	A	G	2.866e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	4362343	X_4362343_SNP [dm3] X_4468310_SNP [dm6]	T	C	2.872e^-4	0.799	INTRON bi & 1 other	TF binding site mE1_TFBS_chinmo
3R	20376996	3R_20376996_SNP [dm3] 3R_24551274_SNP [dm6]	A	G	2.878e^-4	0.799	INTRON Esyt2	TF binding site mE1_TFBS_cad
3R	9356568	3R_9356568_SNP [dm3] 3R_13530846_SNP [dm6]	T	C	2.881e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13624738	3R_13624738_SNP [dm3] 3R_17799016_SNP [dm6]	G	A	2.883e^-4	0.799	NON_SYNONYMOUS_CODING CG17803 UPSTREAM CG7379	TF binding site BDTNP1_TFBS_dl
3L	14336396	3L_14336396_SNP [dm3] 3L_14343296_SNP [dm6]	A	C	2.886e^-4	0.799	INTRON fz
3R	20376993	3R_20376993_SNP [dm3] 3R_24551271_SNP [dm6]	A	G	2.889e^-4	0.799	INTRON Esyt2	TF binding site mE1_TFBS_cad
2R	4844704	2R_4844704_DEL [dm3] 2R_8957199_DEL [dm6]	CAATTCAAC	C	2.893e^-4	0.799	INTRON babo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19490716	3R_19490716_SNP [dm3] 3R_23664994_SNP [dm6]	G	A	2.894e^-4	0.799	INTRON CG31145
3R	21637905	3R_21637905_SNP [dm3] 3R_25812183_SNP [dm6]	G	A	2.903e^-4	0.799	SYNONYMOUS_CODING CG17770 UTR_5_PRIME Acam UPSTREAM Acam DOWNSTREAM CG5024
3R	23745505	3R_23745505_SNP [dm3] 3R_27919783_SNP [dm6]	A	T	2.912e^-4	0.799	UPSTREAM CG33213 DOWNSTREAM CG12259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10811248	3R_10811248_SNP [dm3] 3R_14985526_SNP [dm6]	G	C	2.922e^-4	0.799	INTERGENIC
2L	3367740	2L_3367740_SNP [dm3] 2L_3367740_SNP [dm6]	C	G	2.930e^-4	0.799	INTRON CG34394	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8103798	X_8103798_SNP [dm3] X_8209765_SNP [dm6]	A	G	2.933e^-4	0.799	SYNONYMOUS_CODING sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5241597	3L_5241597_SNP [dm3] 3L_5248497_SNP [dm6]	T	C	2.934e^-4	0.799	UPSTREAM shep INTRON shep
3R	9750608	3R_9750608_DEL [dm3] 3R_13924886_DEL [dm6]	AATTGCCAAGTACCGAT...	A	2.973e^-4	0.799	INTERGENIC
3R	9750643	3R_9750643_SNP [dm3] 3R_13924921_SNP [dm6]	A	T	2.973e^-4	0.799	INTERGENIC
3R	9750655	3R_9750655_DEL [dm3] 3R_13924933_DEL [dm6]	AAAATG	A	2.973e^-4	0.799	INTERGENIC
3R	27790480	3R_27790480_DEL [dm3] 3R_31964758_DEL [dm6]	TAATGACTTCAA...	T	2.982e^-4	0.799	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5536018	3R_5536018_SNP [dm3] 3R_9710296_SNP [dm6]	A	G	2.983e^-4	0.799	UPSTREAM dmt INTRON trbd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	2109842	X_2109842_SNP [dm3] X_2215809_SNP [dm6]	T	C	2.988e^-4	0.799	SYNONYMOUS_CODING Vinc	TF binding site mE1_TFBS_chinmo
2L	5332484	2L_5332484_SNP [dm3] 2L_5332484_SNP [dm6]	G	A	2.997e^-4	0.799	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6664667	3L_6664667_SNP [dm3] 3L_6671567_SNP [dm6]	T	C	3.011e^-4	0.799	INTERGENIC
2L	13291584	2L_13291584_SNP [dm3] 2L_13291584_SNP [dm6]	G	T	3.016e^-4	0.799	INTRON CG31729	TF binding site mE1_TFBS_HSA
3R	16780362	3R_16780362_SNP [dm3] 3R_20954640_SNP [dm6]	C	T	3.018e^-4	0.799	INTRON Atpalpha
3L	8961395	3L_8961395_SNP [dm3] 3L_8968295_SNP [dm6]	T	A	3.036e^-4	0.799	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	21650750	3R_21650750_SNP [dm3] 3R_25825028_SNP [dm6]	C	A	3.037e^-4	0.799	SPLICE_SITE_REGION CR44949 EXON CR44949
3L	23944473	3L_23944473_SNP [dm3] 3L_23951373_SNP [dm6]	C	A	3.057e^-4	0.799	INTRON CG40470
3R	16730078	3R_16730078_SNP [dm3] 3R_20904356_SNP [dm6]	A	G	3.057e^-4	0.799	SYNONYMOUS_CODING CG5621 DOWNSTREAM TotX
2L	4296281	2L_4296281_DEL [dm3] 2L_4296281_DEL [dm6]	TCTAAACAGT	T	3.070e^-4	0.799	INTRON tutl
2L	14333583	2L_14333583_SNP [dm3] 2L_14333583_SNP [dm6]	T	C	3.080e^-4	0.799	SYNONYMOUS_CODING ms_2_34Fe UPSTREAM CG33090
3R	25470438	3R_25470438_SNP [dm3] 3R_29644716_SNP [dm6]	C	T	3.087e^-4	0.799	INTRON Dop1R2
X	3738812	X_3738812_INS [dm3] X_3844779_INS [dm6]	T	TA	3.087e^-4	0.799	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17285438	3L_17285438_SNP [dm3] 3L_17292338_SNP [dm6]	C	T	3.093e^-4	0.799	INTERGENIC
2L	9164297	2L_9164297_SNP [dm3] 2L_9164297_SNP [dm6]	T	A	3.096e^-4	0.799	UTR_5_PRIME CG13108 DOWNSTREAM CG32982	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7321389	2R_7321389_SNP [dm3] 2R_11433884_SNP [dm6]	C	A	3.104e^-4	0.799	UPSTREAM CR43771 INTERGENIC
2L	12795660	2L_12795660_DEL [dm3] 2L_12795660_DEL [dm6]	ATACC	A	3.106e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18875812	3L_18875812_SNP [dm3] 3L_18882712_SNP [dm6]	C	T	3.119e^-4	0.799	INTRON CG3961
2L	14341958	2L_14341958_DEL [dm3] 2L_14341958_DEL [dm6]	AA	A	3.119e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	27091771	3R_27091771_SNP [dm3] 3R_31266049_SNP [dm6]	A	G	3.123e^-4	0.799	INTRON ppk24
3R	27092143	3R_27092143_SNP [dm3] 3R_31266421_SNP [dm6]	C	T	3.124e^-4	0.799	INTRON ppk24
3L	12051710	3L_12051710_SNP [dm3] 3L_12058610_SNP [dm6]	C	A	3.126e^-4	0.799	INTRON rols
2R	19763286	2R_19763286_SNP [dm3] 2R_23875763_SNP [dm6]	T	C	3.127e^-4	0.799	SYNONYMOUS_CODING ken	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14056226	3R_14056226_SNP [dm3] 3R_18230504_SNP [dm6]	C	A	3.128e^-4	0.799	INTERGENIC	insulator Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7192110	3L_7192110_SNP [dm3] 3L_7199010_SNP [dm6]	A	G	3.135e^-4	0.799	INTERGENIC
3R	3744595	3R_3744595_SNP [dm3] 3R_7918873_SNP [dm6]	A	G	3.136e^-4	0.799	SYNONYMOUS_CODING CG10445
3L	7907015	3L_7907015_SNP [dm3] 3L_7913915_SNP [dm6]	T	C	3.136e^-4	0.799	SYNONYMOUS_CODING CG8111 DOWNSTREAM CG8281	TF binding site mE1_TFBS_chinmo
3L	18881479	3L_18881479_SNP [dm3] 3L_18888379_SNP [dm6]	C	T	3.139e^-4	0.799	INTRON CG3961
X	4568864	X_4568864_SNP [dm3] X_4674831_SNP [dm6]	C	A	3.145e^-4	0.799	INTRON rap
3R	14575113	3R_14575113_SNP [dm3] 3R_18749391_SNP [dm6]	C	T	3.147e^-4	0.799	SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_sens
3R	16438323	3R_16438323_SNP [dm3] 3R_20612601_SNP [dm6]	T	C	3.153e^-4	0.799	NON_SYNONYMOUS_CODING CG15923 UTR_3_PRIME CG15923 DOWNSTREAM bon
3R	25411025	3R_25411025_DEL [dm3] 3R_29585303_DEL [dm6]	TAT	G	3.165e^-4	0.799	INTERGENIC
3L	17794722	3L_17794722_SNP [dm3] 3L_17801622_SNP [dm6]	A	C	3.171e^-4	0.799	DOWNSTREAM CG5589 INTRON NUCB1
3L	10578448	3L_10578448_SNP [dm3] 3L_10585348_SNP [dm6]	C	T	3.177e^-4	0.799	SYNONYMOUS_CODING A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7290731	3R_7290731_SNP [dm3] 3R_11465009_SNP [dm6]	G	T	3.177e^-4	0.799	SYNONYMOUS_CODING CG17230	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27560285	3R_27560285_SNP [dm3] 3R_31734563_SNP [dm6]	G	A	3.179e^-4	0.799	UTR_3_PRIME ttk DOWNSTREAM CstF-50	TF binding site mE1_TFBS_inv
X	14784290	X_14784290_SNP [dm3] X_14890257_SNP [dm6]	A	C	3.182e^-4	0.799	INTRON Flo2 & 1 other
X	18929312	X_18929312_SNP [dm3] X_19035279_SNP [dm6]	C	A	3.184e^-4	0.799	INTERGENIC
3R	22753319	3R_22753319_SNP [dm3] 3R_26927597_SNP [dm6]	T	G	3.186e^-4	0.799	INTRON sda
X	9803657	X_9803657_SNP [dm3] X_9909624_SNP [dm6]	G	A	3.187e^-4	0.799	SYNONYMOUS_CODING CG1986	TF binding site mE1_TFBS_chinmo
X	8247321	X_8247321_SNP [dm3] X_8353288_SNP [dm6]	G	T	3.188e^-4	0.799	INTRON nAChRalpha3
2L	10340671	2L_10340671_SNP [dm3] 2L_10340671_SNP [dm6]	A	T	3.192e^-4	0.799	NON_SYNONYMOUS_CODING SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl
3R	26633539	3R_26633539_SNP [dm3] 3R_30807817_SNP [dm6]	A	G	3.194e^-4	0.799	NON_SYNONYMOUS_CODING dj-1beta UPSTREAM cindr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	27096152	3R_27096152_SNP [dm3] 3R_31270430_SNP [dm6]	G	T	3.196e^-4	0.799	INTERGENIC
3R	2010041	3R_2010041_SNP [dm3] 3R_6184319_SNP [dm6]	T	C	3.197e^-4	0.799	UPSTREAM CR31562 INTERGENIC
3L	14371146	3L_14371146_SNP [dm3] 3L_14378046_SNP [dm6]	A	T	3.198e^-4	0.799	INTERGENIC
2L	12797735	2L_12797735_SNP [dm3] 2L_12797735_SNP [dm6]	A	T	3.199e^-4	0.799	INTERGENIC
3R	17006566	3R_17006566_SNP [dm3] 3R_21180844_SNP [dm6]	T	C	3.211e^-4	0.799	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14341962	2L_14341962_SNP [dm3] 2L_14341962_SNP [dm6]	A	T	3.214e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	7705508	2L_7705508_SNP [dm3] 2L_7705508_SNP [dm6]	C	T	3.216e^-4	0.799	SYNONYMOUS_CODING Tep3
2R	2229308	2R_2229308_SNP [dm3] 2R_6341803_SNP [dm6]	T	C	3.221e^-4	0.799	INTERGENIC	transposable element FlyBase
2R	14523896	2R_14523896_SNP [dm3] 2R_18636391_SNP [dm6]	A	G	3.222e^-4	0.799	SYNONYMOUS_CODING CG30122	TF binding site mE1_TFBS_inv
3R	17535473	3R_17535473_SNP [dm3] 3R_21709751_SNP [dm6]	G	T	3.225e^-4	0.799	INTRON CG31176
3R	13176616	3R_13176616_SNP [dm3] 3R_17350894_SNP [dm6]	C	G	3.228e^-4	0.799	INTRON beat-IIa
3R	14008746	3R_14008746_SNP [dm3] 3R_18183024_SNP [dm6]	C	A	3.235e^-4	0.799	SYNONYMOUS_CODING cdm DOWNSTREAM CG7208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10896346	2R_10896346_DEL [dm3] 2R_15008841_DEL [dm6]	AA	A	3.241e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8552763	3R_8552763_SNP [dm3] 3R_12727041_SNP [dm6]	T	A	3.242e^-4	0.799	UPSTREAM CR44231 INTERGENIC
2R	6934179	2R_6934179_SNP [dm3] 2R_11046674_SNP [dm6]	A	T	3.245e^-4	0.799	INTRON luna
2L	7705541	2L_7705541_SNP [dm3] 2L_7705541_SNP [dm6]	G	C	3.246e^-4	0.799	NON_SYNONYMOUS_CODING Tep3
X	15284305	X_15284305_SNP [dm3] X_15390272_SNP [dm6]	T	A	3.251e^-4	0.799	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
3L	17196560	3L_17196560_SNP [dm3] 3L_17203460_SNP [dm6]	T	A	3.261e^-4	0.799	INTRON Rbp6
3R	21648535	3R_21648535_SNP [dm3] 3R_25822813_SNP [dm6]	A	T	3.262e^-4	0.799	DOWNSTREAM CR44949 INTERGENIC
2R	19237696	2R_19237696_DEL [dm3] 2R_23350173_DEL [dm6]	AA	A	3.262e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16283624	3L_16283624_SNP [dm3] 3L_16290524_SNP [dm6]	C	T	3.262e^-4	0.799	NON_SYNONYMOUS_CODING CG13045
3R	16730622	3R_16730622_SNP [dm3] 3R_20904900_SNP [dm6]	G	A	3.279e^-4	0.799	DOWNSTREAM TotX INTRON CG5621
2L	12901103	2L_12901103_SNP [dm3] 2L_12901103_SNP [dm6]	T	A	3.283e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25410878	3R_25410878_SNP [dm3] 3R_29585156_SNP [dm6]	T	C	3.283e^-4	0.799	INTERGENIC
3R	5563645	3R_5563645_SNP [dm3] 3R_9737923_SNP [dm6]	T	A	3.283e^-4	0.799	INTRON CG12950
2R	17117116	2R_17117116_SNP [dm3] 2R_21229611_SNP [dm6]	C	T	3.284e^-4	0.799	INTRON ASPP
3R	20923235	3R_20923235_SNP [dm3] 3R_25097513_SNP [dm6]	G	A	3.285e^-4	0.799	UPSTREAM CG33095 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21166795	2L_21166795_SNP [dm3] 2L_21166795_SNP [dm6]	C	T	3.285e^-4	0.799	NON_SYNONYMOUS_CODING CG43345 UTR_5_PRIME CG43346 UPSTREAM CG43346 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8135956	2L_8135956_SNP [dm3] 2L_8135956_SNP [dm6]	G	A	3.287e^-4	0.799	SYNONYMOUS_CODING CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11795772	2L_11795772_SNP [dm3] 2L_11795772_SNP [dm6]	T	C	3.292e^-4	0.799	UTR_3_PRIME crol
3R	2660119	3R_2660119_SNP [dm3] 3R_6834397_SNP [dm6]	G	A	3.298e^-4	0.799	INTRON Scr	regulatory region REDfly_CRMs
2L	10155779	2L_10155779_SNP [dm3] 2L_10155779_SNP [dm6]	A	G	3.299e^-4	0.799	UTR_3_PRIME CG4839 DOWNSTREAM CG4839 INTRON CG44153
X	8103885	X_8103885_SNP [dm3] X_8209852_SNP [dm6]	A	G	3.303e^-4	0.799	SYNONYMOUS_CODING sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18579300	2L_18579300_SNP [dm3] 2L_18579300_SNP [dm6]	C	T	3.306e^-4	0.799	INTRON Pde11
3L	10997025	3L_10997025_SNP [dm3] 3L_11003925_SNP [dm6]	C	G	3.311e^-4	0.799	INTRON klu
X	14811294	X_14811294_SNP [dm3] X_14917261_SNP [dm6]	T	C	3.325e^-4	0.799	NON_SYNONYMOUS_CODING Eo INTRON Flo2	TF binding site mE1_TFBS_HSA
2R	7043454	2R_7043454_SNP [dm3] 2R_11155949_SNP [dm6]	T	A	3.331e^-4	0.799	DOWNSTREAM CG13230 INTRON CG13229
X	5262978	X_5262978_SNP [dm3] X_5368945_SNP [dm6]	C	T	3.342e^-4	0.799	INTRON SK
3L	12053838	3L_12053838_SNP [dm3] 3L_12060738_SNP [dm6]	G	T	3.347e^-4	0.799	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6425414	2L_6425414_INS [dm3] 2L_6425414_INS [dm6]	G	GG	3.350e^-4	0.799	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12901079	2L_12901079_DEL [dm3] 2L_12901079_DEL [dm6]	CGGT	C	3.353e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2272425	3L_2272425_SNP [dm3] 3L_2272425_SNP [dm6]	G	A	3.357e^-4	0.799	SYNONYMOUS_CODING yellow-g	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13265987	3L_13265987_DEL [dm3] 3L_13272887_DEL [dm6]	CACCAC	C	3.361e^-4	0.799	INTRON caps
2L	9770716	2L_9770716_SNP [dm3] 2L_9770716_SNP [dm6]	G	T	3.365e^-4	0.799	DOWNSTREAM ppk16 & 1 other INTRON ppk18
2L	8532163	2L_8532163_SNP [dm3] 2L_8532163_SNP [dm6]	G	A	3.374e^-4	0.799	INTRON CG17834
2L	7508002	2L_7508002_SNP [dm3] 2L_7508002_SNP [dm6]	G	T	3.380e^-4	0.799	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8961437	3L_8961437_SNP [dm3] 3L_8968337_SNP [dm6]	A	T	3.381e^-4	0.799	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	1248423	3R_1248423_SNP [dm3] 3R_5422701_SNP [dm6]	A	G	3.385e^-4	0.799	INTRON CG14669
2L	11240125	2L_11240125_SNP [dm3] 2L_11240125_SNP [dm6]	G	A	3.386e^-4	0.799	INTRON ab
3L	2743681	3L_2743681_SNP [dm3] 3L_2743681_SNP [dm6]	G	C	3.389e^-4	0.799	INTRON Mrtf
2L	6447421	2L_6447421_SNP [dm3] 2L_6447421_SNP [dm6]	T	C	3.395e^-4	0.799	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10508815	3L_10508815_SNP [dm3] 3L_10515715_SNP [dm6]	C	G	3.398e^-4	0.799	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	27761633	3R_27761633_SNP [dm3] 3R_31935911_SNP [dm6]	T	G	3.401e^-4	0.799	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16295036	X_16295036_SNP [dm3] X_16401003_SNP [dm6]	C	A	3.412e^-4	0.799	NON_SYNONYMOUS_CODING CG9981	TF binding site mE1_TFBS_HSA
3L	3261074	3L_3261074_SNP [dm3] 3L_3261074_SNP [dm6]	G	A	3.416e^-4	0.799	INTRON ckd
3R	25522134	3R_25522134_SNP [dm3] 3R_29696412_SNP [dm6]	C	T	3.417e^-4	0.799	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14566535	3R_14566535_SNP [dm3] 3R_18740813_SNP [dm6]	A	T	3.417e^-4	0.799	UPSTREAM Mekk1 INTRON Mekk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	14523070	3L_14523070_SNP [dm3] 3L_14529970_SNP [dm6]	A	T	3.419e^-4	0.799	INTRON bbg
3R	18962341	3R_18962341_SNP [dm3] 3R_23136619_SNP [dm6]	T	A	3.420e^-4	0.799	INTRON hh
3R	23968396	3R_23968396_SNP [dm3] 3R_28142674_SNP [dm6]	T	G	3.422e^-4	0.799	INTERGENIC
3R	2983117	3R_2983117_SNP [dm3] 3R_7157395_SNP [dm6]	C	T	3.430e^-4	0.799	INTERGENIC
2R	17304997	2R_17304997_SNP [dm3] 2R_21417492_SNP [dm6]	A	C	3.432e^-4	0.799	UPSTREAM Sdc INTRON Sdc
3L	5435400	3L_5435400_SNP [dm3] 3L_5442300_SNP [dm6]	A	T	3.438e^-4	0.799	UTR_3_PRIME CG34391
2L	1964149	2L_1964149_SNP [dm3] 2L_1964149_SNP [dm6]	G	T	3.444e^-4	0.799	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	2108143	X_2108143_SNP [dm3] X_2214110_SNP [dm6]	C	T	3.445e^-4	0.799	UPSTREAM msta DOWNSTREAM Vinc INTERGENIC
X	15285036	X_15285036_SNP [dm3] X_15391003_SNP [dm6]	T	G	3.446e^-4	0.799	INTRON Cngl
3R	11231048	3R_11231048_SNP [dm3] 3R_15405326_SNP [dm6]	C	A	3.454e^-4	0.799	INTRON CG6125
X	12374654	X_12374654_SNP [dm3] X_12480621_SNP [dm6]	T	C	3.454e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14120356	2R_14120356_SNP [dm3] 2R_18232851_SNP [dm6]	C	T	3.460e^-4	0.799	UTR_5_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	13375329	3L_13375329_SNP [dm3] 3L_13382229_SNP [dm6]	A	G	3.461e^-4	0.799	UPSTREAM CG14107 & 1 other INTERGENIC
3L	16379635	3L_16379635_DEL [dm3] 3L_16386535_DEL [dm6]	AT	C	3.465e^-4	0.799	UTR_5_PRIME RAF2 UPSTREAM CG4729 INTRON RAF2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6795041	2L_6795041_SNP [dm3] 2L_6795041_SNP [dm6]	C	A	3.477e^-4	0.799	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	11698564	2L_11698564_SNP [dm3] 2L_11698564_SNP [dm6]	G	T	3.479e^-4	0.799	INTERGENIC
X	9512929	X_9512929_SNP [dm3] X_9618896_SNP [dm6]	G	T	3.485e^-4	0.799	INTRON CG42797
2L	6245923	2L_6245923_SNP [dm3] 2L_6245923_SNP [dm6]	G	C	3.506e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26120288	3R_26120288_SNP [dm3] 3R_30294566_SNP [dm6]	C	G	3.517e^-4	0.799	INTRON hdc
2L	6626534	2L_6626534_SNP [dm3] 2L_6626534_SNP [dm6]	G	T	3.526e^-4	0.799	NON_SYNONYMOUS_CODING Oatp26F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3598767	2L_3598767_SNP [dm3] 2L_3598767_SNP [dm6]	T	A	3.527e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11682302	2L_11682302_SNP [dm3] 2L_11682302_SNP [dm6]	G	A	3.528e^-4	0.799	INTERGENIC
3R	20377036	3R_20377036_SNP [dm3] 3R_24551314_SNP [dm6]	T	A	3.529e^-4	0.799	INTRON Esyt2	TF binding site mE1_TFBS_cad
3L	6572380	3L_6572380_SNP [dm3] 3L_6579280_SNP [dm6]	C	A	3.530e^-4	0.799	INTRON CG18769 & 1 other
X	18910128	X_18910128_DEL [dm3] X_19016095_DEL [dm6]	TAAGGCTGTTCGTTTCCAAG...	T	3.531e^-4	0.799	INTRON CG43759
3L	6111387	3L_6111387_SNP [dm3] 3L_6118287_SNP [dm6]	G	A	3.537e^-4	0.799	INTRON Ets65A
2R	4942540	2R_4942540_SNP [dm3] 2R_9055035_SNP [dm6]	C	A	3.538e^-4	0.799	INTRON CG13743	TF binding site BDTNP1_TFBS_twi
X	6386840	X_6386840_SNP [dm3] X_6492807_SNP [dm6]	A	G	3.540e^-4	0.799	INTRON CG42340
2L	1782048	2L_1782048_SNP [dm3] 2L_1782048_SNP [dm6]	C	T	3.541e^-4	0.799	INTERGENIC
2L	14931590	2L_14931590_SNP [dm3] 2L_14931590_SNP [dm6]	A	G	3.542e^-4	0.799	INTRON CG42313
X	14292961	X_14292961_SNP [dm3] X_14398928_SNP [dm6]	G	A	3.545e^-4	0.799	INTRON dpr8
3R	23476429	3R_23476429_SNP [dm3] 3R_27650707_SNP [dm6]	C	T	3.547e^-4	0.799	UTR_5_PRIME tau DOWNSTREAM tau INTRON tau
3L	9415833	3L_9415833_SNP [dm3] 3L_9422733_SNP [dm6]	T	G	3.548e^-4	0.799	UPSTREAM aay INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3531221	2L_3531221_SNP [dm3] 2L_3531221_SNP [dm6]	T	A	3.551e^-4	0.799	UPSTREAM Spindly INTRON Che-13
3R	26120748	3R_26120748_SNP [dm3] 3R_30295026_SNP [dm6]	C	T	3.552e^-4	0.799	INTRON hdc
2L	12901093	2L_12901093_SNP [dm3] 2L_12901093_SNP [dm6]	G	A	3.561e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3260393	3L_3260393_SNP [dm3] 3L_3260393_SNP [dm6]	C	T	3.562e^-4	0.799	INTRON ckd
2L	11929704	2L_11929704_SNP [dm3] 2L_11929704_SNP [dm6]	T	C	3.564e^-4	0.799	INTERGENIC
X	18909528	X_18909528_SNP [dm3] X_19015495_SNP [dm6]	C	T	3.566e^-4	0.799	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9356576	3R_9356576_SNP [dm3] 3R_13530854_SNP [dm6]	C	A	3.568e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13489957	3L_13489957_SNP [dm3] 3L_13496857_SNP [dm6]	G	C	3.568e^-4	0.799	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6103572	X_6103572_SNP [dm3] X_6209539_SNP [dm6]	T	C	3.577e^-4	0.799	INTERGENIC
3R	26670823	3R_26670823_SNP [dm3] 3R_30845101_SNP [dm6]	C	T	3.577e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	9752273	3R_9752273_SNP [dm3] 3R_13926551_SNP [dm6]	A	T	3.579e^-4	0.799	INTERGENIC
2R	1752193	2R_1752193_SNP [dm3] 2R_5864688_SNP [dm6]	G	C	3.582e^-4	0.799	INTERGENIC
2L	1939670	2L_1939670_SNP [dm3] 2L_1939670_SNP [dm6]	C	G	3.583e^-4	0.799	SYNONYMOUS_CODING CG7337 INTRON CG7337
2R	9090996	2R_9090996_SNP [dm3] 2R_13203491_SNP [dm6]	G	A	3.586e^-4	0.799	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
3L	6110878	3L_6110878_SNP [dm3] 3L_6117778_SNP [dm6]	C	T	3.588e^-4	0.799	INTRON Ets65A
3R	5598186	3R_5598186_SNP [dm3] 3R_9772464_SNP [dm6]	G	A	3.590e^-4	0.799	NON_SYNONYMOUS_CODING Whamy UPSTREAM CG9471	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5664316	2R_5664316_SNP [dm3] 2R_9776811_SNP [dm6]	G	A	3.592e^-4	0.799	DOWNSTREAM CR44207 INTRON CG1688
2L	6247227	2L_6247227_SNP [dm3] 2L_6247227_SNP [dm6]	C	T	3.594e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13493212	3L_13493212_SNP [dm3] 3L_13500112_SNP [dm6]	C	T	3.596e^-4	0.799	INTRON Tgi	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5251241	3L_5251241_SNP [dm3] 3L_5258141_SNP [dm6]	A	G	3.598e^-4	0.799	INTRON shep
X	18280597	X_18280597_SNP [dm3] X_18386564_SNP [dm6]	A	C	3.600e^-4	0.799	UPSTREAM Tsf1 INTERGENIC
3R	27816203	3R_27816203_SNP [dm3] 3R_31990481_SNP [dm6]	G	A	3.603e^-4	0.799	SYNONYMOUS_CODING CG2003 UTR_3_PRIME CG2003 INTRON heph
2L	6799104	2L_6799104_SNP [dm3] 2L_6799104_SNP [dm6]	T	C	3.604e^-4	0.799	UPSTREAM nrv2 & 2 others DOWNSTREAM CG17376 INTERGENIC	regulatory region REDfly_CRMs
X	18910116	X_18910116_SNP [dm3] X_19016083_SNP [dm6]	T	G	3.606e^-4	0.799	INTRON CG43759
2L	12132543	2L_12132543_SNP [dm3] 2L_12132543_SNP [dm6]	C	T	3.609e^-4	0.799	INTRON rho-6
3R	26119168	3R_26119168_INS [dm3] 3R_30293446_INS [dm6]	C	CCAGT	3.615e^-4	0.799	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	12999915	3R_12999915_SNP [dm3] 3R_17174193_SNP [dm6]	A	G	3.633e^-4	0.799	INTRON Mur89F
3L	11366800	3L_11366800_SNP [dm3] 3L_11373700_SNP [dm6]	T	A	3.634e^-4	0.799	INTERGENIC
3R	26006048	3R_26006048_SNP [dm3] 3R_30180326_SNP [dm6]	G	A	3.635e^-4	0.799	UTR_5_PRIME Bet5 DOWNSTREAM CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	11609748	2L_11609748_SNP [dm3] 2L_11609748_SNP [dm6]	T	C	3.641e^-4	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3L	8415707	3L_8415707_SNP [dm3] 3L_8422607_SNP [dm6]	T	C	3.647e^-4	0.799	UPSTREAM CG32354 INTERGENIC
X	4303457	X_4303457_DEL [dm3] X_4409424_DEL [dm6]	CAC	G	3.648e^-4	0.799	INTRON CR32773
3L	16731464	3L_16731464_SNP [dm3] 3L_16738364_SNP [dm6]	T	C	3.651e^-4	0.799	INTRON CG9701	TF binding site mE1_TFBS_sens
2L	4300465	2L_4300465_SNP [dm3] 2L_4300465_SNP [dm6]	A	T	3.661e^-4	0.799	INTRON tutl
3L	10978559	3L_10978559_SNP [dm3] 3L_10985459_SNP [dm6]	C	A	3.670e^-4	0.799	INTRON klu	TF binding site BDTNP1_TFBS_dl
X	2552466	X_2552466_SNP [dm3] X_2658433_SNP [dm6]	T	G	3.673e^-4	0.799	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11792520	2R_11792520_INS [dm3] 2R_15905015_INS [dm6]	A	ATTCCTTGTAGAGTGGCAT...	3.677e^-4	0.799	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	3146296	3R_3146296_SNP [dm3] 3R_7320574_SNP [dm6]	A	G	3.678e^-4	0.799	INTERGENIC
2L	8506601	2L_8506601_SNP [dm3] 2L_8506601_SNP [dm6]	T	A	3.679e^-4	0.799	INTRON Dh31
3L	7229411	3L_7229411_SNP [dm3] 3L_7236311_SNP [dm6]	C	A	3.685e^-4	0.799	DOWNSTREAM CG14826 & 1 other INTERGENIC
2L	1241020	2L_1241020_INS [dm3] 2L_1241020_INS [dm6]	A	ATGATCTA	3.685e^-4	0.799	INTRON CG5397	TF binding site mE1_TFBS_chinmo
2R	13918642	2R_13918642_SNP [dm3] 2R_18031137_SNP [dm6]	T	C	3.689e^-4	0.799	INTERGENIC
3R	12034299	3R_12034299_SNP [dm3] 3R_16208577_SNP [dm6]	G	A	3.693e^-4	0.799	UPSTREAM CR45640 & 1 other DOWNSTREAM CR45638 EXON CR45639
2R	17157337	2R_17157337_SNP [dm3] 2R_21269832_SNP [dm6]	A	T	3.697e^-4	0.799	INTRON Rgk3
3L	5142163	3L_5142163_SNP [dm3] 3L_5149063_SNP [dm6]	C	T	3.702e^-4	0.799	DOWNSTREAM Gen INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo
3R	12986349	3R_12986349_SNP [dm3] 3R_17160627_SNP [dm6]	G	C	3.704e^-4	0.799	INTRON Mur89F
3R	13572368	3R_13572368_DEL [dm3] 3R_17746646_DEL [dm6]	TTTG	T	3.709e^-4	0.799	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
3R	13572373	3R_13572373_DEL [dm3] 3R_17746651_DEL [dm6]	AGCTTCAAAAGCCGCATTTC...	A	3.709e^-4	0.799	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
2L	13290463	2L_13290463_SNP [dm3] 2L_13290463_SNP [dm6]	C	T	3.709e^-4	0.799	UTR_5_PRIME CG31729 UPSTREAM CG31729 DOWNSTREAM Uvrag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26109559	3R_26109559_SNP [dm3] 3R_30283837_SNP [dm6]	C	T	3.711e^-4	0.799	INTRON hdc
3R	5316187	3R_5316187_SNP [dm3] 3R_9490465_SNP [dm6]	A	T	3.717e^-4	0.799	INTRON CG16779
3R	9752198	3R_9752198_SNP [dm3] 3R_13926476_SNP [dm6]	A	G	3.718e^-4	0.799	INTERGENIC
X	5327312	X_5327312_DEL [dm3] X_5433279_DEL [dm6]	AGTGGGAACA	A	3.719e^-4	0.799	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19134992	2R_19134992_SNP [dm3] 2R_23247469_SNP [dm6]	G	C	3.723e^-4	0.799	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1410029	3L_1410029_SNP [dm3] 3L_1410029_SNP [dm6]	G	T	3.740e^-4	0.799	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16549153	2L_16549153_SNP [dm3] 2L_16549153_SNP [dm6]	C	T	3.742e^-4	0.799	DOWNSTREAM CG5968 INTRON CG42389
3L	12051621	3L_12051621_SNP [dm3] 3L_12058521_SNP [dm6]	C	T	3.743e^-4	0.799	INTRON rols
2R	12035932	2R_12035932_SNP [dm3] 2R_16148427_SNP [dm6]	A	G	3.748e^-4	0.799	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
3R	11604006	3R_11604006_SNP [dm3] 3R_15778284_SNP [dm6]	A	C	3.753e^-4	0.799	DOWNSTREAM CG4525 INTERGENIC
3L	5734377	3L_5734377_SNP [dm3] 3L_5741277_SNP [dm6]	G	A	3.760e^-4	0.799	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6526598	3L_6526598_SNP [dm3] 3L_6533498_SNP [dm6]	G	A	3.768e^-4	0.799	INTRON sfl
2L	6425383	2L_6425383_SNP [dm3] 2L_6425383_SNP [dm6]	C	T	3.770e^-4	0.799	SYNONYMOUS_CODING Fic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18536520	3R_18536520_SNP [dm3] 3R_22710798_SNP [dm6]	A	C	3.772e^-4	0.799	UPSTREAM CG4907 DOWNSTREAM wge INTERGENIC
2R	1868673	2R_1868673_SNP [dm3] 2R_5981168_SNP [dm6]	T	A	3.774e^-4	0.799	UPSTREAM mle & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2L	1513464	2L_1513464_SNP [dm3] 2L_1513464_SNP [dm6]	G	A	3.780e^-4	0.799	INTERGENIC
2R	15376658	2R_15376658_SNP [dm3] 2R_19489153_SNP [dm6]	C	T	3.784e^-4	0.799	SYNONYMOUS_CODING Oseg6
X	16049207	X_16049207_SNP [dm3] X_16155174_SNP [dm6]	G	T	3.792e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	15706170	3L_15706170_SNP [dm3] 3L_15713070_SNP [dm6]	T	C	3.794e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	4420039	3R_4420039_SNP [dm3] 3R_8594317_SNP [dm6]	A	C	3.796e^-4	0.799	INTRON 5-HT2B
2L	1954185	2L_1954185_SNP [dm3] 2L_1954185_SNP [dm6]	T	C	3.797e^-4	0.799	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9240542	2R_9240542_SNP [dm3] 2R_13353037_SNP [dm6]	A	G	3.808e^-4	0.799	DOWNSTREAM CG17048 INTRON CR44206
3R	5555296	3R_5555296_SNP [dm3] 3R_9729574_SNP [dm6]	A	T	3.810e^-4	0.799	UTR_5_PRIME FoxP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13891166	3L_13891166_SNP [dm3] 3L_13898066_SNP [dm6]	G	A	3.814e^-4	0.799	INTRON dysc
X	12676880	X_12676880_SNP [dm3] X_12782847_SNP [dm6]	A	G	3.825e^-4	0.799	INTRON CG32647
3R	23226386	3R_23226386_SNP [dm3] 3R_27400664_SNP [dm6]	G	T	3.829e^-4	0.799	INTRON side
3R	18963644	3R_18963644_SNP [dm3] 3R_23137922_SNP [dm6]	G	C	3.835e^-4	0.799	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1203295	2R_1203295_SNP [dm3] 2R_5315790_SNP [dm6]	C	T	3.838e^-4	0.799	INTRON sxc	transposable element FlyBase
2L	9709875	2L_9709875_SNP [dm3] 2L_9709875_SNP [dm6]	G	A	3.838e^-4	0.799	SYNONYMOUS_CODING CG4364 DOWNSTREAM pelo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	13411136	2L_13411136_SNP [dm3] 2L_13411136_SNP [dm6]	G	T	3.844e^-4	0.799	DOWNSTREAM Vm34Ca & 1 other INTERGENIC
3R	26121908	3R_26121908_SNP [dm3] 3R_30296186_SNP [dm6]	A	T	3.845e^-4	0.799	INTRON hdc
2L	9189048	2L_9189048_SNP [dm3] 2L_9189048_SNP [dm6]	C	T	3.851e^-4	0.799	INTRON tai
3R	21637700	3R_21637700_DEL [dm3] 3R_25811978_DEL [dm6]	TTCCT	T	3.865e^-4	0.799	UTR_5_PRIME CG17770 & 1 other UPSTREAM Acam DOWNSTREAM CG5024
2R	11932614	2R_11932614_SNP [dm3] 2R_16045109_SNP [dm6]	T	C	3.869e^-4	0.799	SYNONYMOUS_CODING SP2353
2L	1548805	2L_1548805_SNP [dm3] 2L_1548805_SNP [dm6]	G	A	3.870e^-4	0.799	INTERGENIC
3R	26110445	3R_26110445_SNP [dm3] 3R_30284723_SNP [dm6]	G	C	3.874e^-4	0.799	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	27091967	3R_27091967_SNP [dm3] 3R_31266245_SNP [dm6]	T	C	3.874e^-4	0.799	SYNONYMOUS_CODING ppk24
X	7778175	X_7778175_SNP [dm3] X_7884142_SNP [dm6]	G	A	3.877e^-4	0.799	UPSTREAM Ir7g & 1 other INTERGENIC
3R	9764017	3R_9764017_SNP [dm3] 3R_13938295_SNP [dm6]	A	C	3.880e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	27793152	3R_27793152_DEL [dm3] 3R_31967430_DEL [dm6]	GAAGCTGCTTGG...	G	3.881e^-4	0.799	INTRON heph
X	6386842	X_6386842_SNP [dm3] X_6492809_SNP [dm6]	G	A	3.886e^-4	0.799	INTRON CG42340
X	7130124	X_7130124_SNP [dm3] X_7236091_SNP [dm6]	G	T	3.894e^-4	0.799	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4982915	3L_4982915_SNP [dm3] 3L_4982915_SNP [dm6]	C	A	3.898e^-4	0.799	INTRON Con
2R	7321584	2R_7321584_SNP [dm3] 2R_11434079_SNP [dm6]	C	A	3.900e^-4	0.799	UPSTREAM CR43771 INTERGENIC
2L	21189698	2L_21189698_DEL [dm3] 2L_21189698_DEL [dm6]	TT	T	3.909e^-4	0.799	INTRON Ret
2L	802533	2L_802533_SNP [dm3] 2L_802533_SNP [dm6]	C	T	3.918e^-4	0.799	INTERGENIC
3R	4209413	3R_4209413_SNP [dm3] 3R_8383691_SNP [dm6]	A	C	3.929e^-4	0.799	UTR_3_PRIME CG45263 INTRON CG45263
2R	9091028	2R_9091028_SNP [dm3] 2R_13203523_SNP [dm6]	G	T	3.936e^-4	0.799	NON_SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
3R	11020044	3R_11020044_SNP [dm3] 3R_15194322_SNP [dm6]	C	T	3.939e^-4	0.799	SYNONYMOUS_CODING CG6752	TF binding site mE1_TFBS_sens
2R	8785170	2R_8785170_SNP [dm3] 2R_12897665_SNP [dm6]	A	G	3.945e^-4	0.799	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11756785	2R_11756785_SNP [dm3] 2R_15869280_SNP [dm6]	G	A	3.946e^-4	0.799	UPSTREAM Rif1 DOWNSTREAM sli INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13031001	3R_13031001_SNP [dm3] 3R_17205279_SNP [dm6]	G	T	3.951e^-4	0.799	INTERGENIC
2L	6340085	2L_6340085_INS [dm3] 2L_6340085_INS [dm6]	A	ACATATAGA	3.961e^-4	0.799	INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
X	4585686	X_4585686_SNP [dm3] X_4691653_SNP [dm6]	C	G	3.964e^-4	0.799	UTR_5_PRIME ctp	TF binding site BDTNP1_TFBS_dl
2L	1953926	2L_1953926_SNP [dm3] 2L_1953926_SNP [dm6]	G	A	3.967e^-4	0.799	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10729093	3L_10729093_SNP [dm3] 3L_10735993_SNP [dm6]	C	T	3.968e^-4	0.799	INTERGENIC
3L	3888024	3L_3888024_SNP [dm3] 3L_3888024_SNP [dm6]	G	A	3.971e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1953910	2L_1953910_DEL [dm3] 2L_1953910_DEL [dm6]	TACGA	T	3.975e^-4	0.799	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18546226	3L_18546226_SNP [dm3] 3L_18553126_SNP [dm6]	A	G	3.990e^-4	0.799	INTERGENIC
3L	14321646	3L_14321646_SNP [dm3] 3L_14328546_SNP [dm6]	G	T	3.993e^-4	0.799	UPSTREAM CG13482 INTRON fz
2L	12798111	2L_12798111_SNP [dm3] 2L_12798111_SNP [dm6]	C	T	3.998e^-4	0.799	INTERGENIC
X	10070001	X_10070001_SNP [dm3] X_10175968_SNP [dm6]	G	T	4.009e^-4	0.799	INTRON CG43902 & 1 other
3R	13822710	3R_13822710_SNP [dm3] 3R_17996988_SNP [dm6]	T	A	4.012e^-4	0.799	INTRON cpo
X	18229040	X_18229040_SNP [dm3] X_18335007_SNP [dm6]	C	G	4.017e^-4	0.799	INTRON CG6123
X	6716146	X_6716146_SNP [dm3] X_6822113_SNP [dm6]	C	T	4.020e^-4	0.799	SYNONYMOUS_CODING CG4542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	15298467	3R_15298467_SNP [dm3] 3R_19472745_SNP [dm6]	T	C	4.023e^-4	0.799	INTRON Dys	TF binding site mE1_TFBS_cad
2L	12800064	2L_12800064_SNP [dm3] 2L_12800064_SNP [dm6]	A	G	4.024e^-4	0.799	INTERGENIC
2R	9559008	2R_9559008_SNP [dm3] 2R_13671503_SNP [dm6]	G	A	4.025e^-4	0.799	UTR_3_PRIME CG18368 DOWNSTREAM CR45031 INTRON fas
3L	18140545	3L_18140545_SNP [dm3] 3L_18147445_SNP [dm6]	A	G	4.027e^-4	0.799	INTERGENIC
2L	3915988	2L_3915988_SNP [dm3] 2L_3915988_SNP [dm6]	C	T	4.036e^-4	0.799	INTRON fred
X	8266868	X_8266868_SNP [dm3] X_8372835_SNP [dm6]	G	C	4.039e^-4	0.799	INTERGENIC
X	13673488	X_13673488_SNP [dm3] X_13779455_SNP [dm6]	G	A	4.047e^-4	0.799	UTR_3_PRIME rdgB DOWNSTREAM CtsB1	TF binding site BDTNP1_TFBS_dl
2L	3530498	2L_3530498_SNP [dm3] 2L_3530498_SNP [dm6]	A	C	4.048e^-4	0.799	UPSTREAM Che-13 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12262682	3L_12262682_SNP [dm3] 3L_12269582_SNP [dm6]	C	T	4.055e^-4	0.799	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
2L	2852715	2L_2852715_SNP [dm3] 2L_2852715_SNP [dm6]	G	A	4.060e^-4	0.799	INTRON CG3104
X	6334198	X_6334198_SNP [dm3] X_6440165_SNP [dm6]	T	C	4.060e^-4	0.799	INTRON CG42340
2L	19926309	2L_19926309_SNP [dm3] 2L_19926309_SNP [dm6]	A	T	4.069e^-4	0.799	SYNONYMOUS_CODING sick
3L	14641176	3L_14641176_SNP [dm3] 3L_14648076_SNP [dm6]	C	G	4.070e^-4	0.799	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10712233	3L_10712233_SNP [dm3] 3L_10719133_SNP [dm6]	T	A	4.078e^-4	0.799	INTERGENIC
3L	5424568	3L_5424568_SNP [dm3] 3L_5431468_SNP [dm6]	G	A	4.080e^-4	0.799	INTRON CG34391	TF binding site mE1_TFBS_inv
2R	2398347	2R_2398347_SNP [dm3] 2R_6510842_SNP [dm6]	A	T	4.083e^-4	0.799	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19427504	X_19427504_SNP [dm3] X_19533471_SNP [dm6]	C	T	4.083e^-4	0.799	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11021747	2R_11021747_SNP [dm3] 2R_15134242_SNP [dm6]	T	C	4.085e^-4	0.799	INTRON chn	TF binding site BDTNP1_TFBS_da
3R	13130469	3R_13130469_SNP [dm3] 3R_17304747_SNP [dm6]	G	C	4.087e^-4	0.799	INTERGENIC
2R	5875922	2R_5875922_SNP [dm3] 2R_9988417_SNP [dm6]	G	A	4.088e^-4	0.799	UPSTREAM TER94 EXON CR45324	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
X	18975800	X_18975800_SNP [dm3] X_19081767_SNP [dm6]	T	A	4.092e^-4	0.799	DOWNSTREAM CG7423 INTRON CG14191	TF binding site mE1_TFBS_chinmo
2R	9611603	2R_9611603_SNP [dm3] 2R_13724098_SNP [dm6]	T	C	4.116e^-4	0.799	INTRON fas	TF binding site mE1_TFBS_cad
3R	5750937	3R_5750937_SNP [dm3] 3R_9925215_SNP [dm6]	A	T	4.118e^-4	0.799	INTRON Glut4EF
3L	16377785	3L_16377785_SNP [dm3] 3L_16384685_SNP [dm6]	G	A	4.118e^-4	0.799	UPSTREAM CG4729 INTRON CG4729
3L	7612057	3L_7612057_SNP [dm3] 3L_7618957_SNP [dm6]	A	T	4.120e^-4	0.799	INTRON CG33275
2L	15595615	2L_15595615_SNP [dm3] 2L_15595615_SNP [dm6]	G	C	4.128e^-4	0.799	INTERGENIC
3R	4296412	3R_4296412_SNP [dm3] 3R_8470690_SNP [dm6]	T	C	4.130e^-4	0.799	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
X	18907116	X_18907116_SNP [dm3] X_19013083_SNP [dm6]	T	G	4.138e^-4	0.799	NON_SYNONYMOUS_CODING CG43759	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13647557	3L_13647557_SNP [dm3] 3L_13654457_SNP [dm6]	A	G	4.140e^-4	0.799	INTRON bru-3
3L	19237687	3L_19237687_SNP [dm3] 3L_19244587_SNP [dm6]	C	T	4.140e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14681753	2L_14681753_SNP [dm3] 2L_14681753_SNP [dm6]	C	A	4.147e^-4	0.799	INTRON osp
3L	4722599	3L_4722599_SNP [dm3] 3L_4722599_SNP [dm6]	A	C	4.157e^-4	0.799	INTRON RhoGEF64C
3R	8156262	3R_8156262_SNP [dm3] 3R_12330540_SNP [dm6]	T	A	4.161e^-4	0.799	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15595146	2L_15595146_SNP [dm3] 2L_15595146_SNP [dm6]	G	A	4.163e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13741016	2R_13741016_SNP [dm3] 2R_17853511_SNP [dm6]	T	C	4.175e^-4	0.799	SYNONYMOUS_CODING CG30323 INTRON olf186-F
3R	21628846	3R_21628846_DEL [dm3] 3R_25803124_DEL [dm6]	AATATAGC	A	4.185e^-4	0.799	INTERGENIC
3R	9833843	3R_9833843_SNP [dm3] 3R_14008121_SNP [dm6]	G	T	4.202e^-4	0.799	INTRON rdx
3L	14065951	3L_14065951_SNP [dm3] 3L_14072851_SNP [dm6]	G	T	4.203e^-4	0.799	SYNONYMOUS_CODING Pex1
3L	7835533	3L_7835533_SNP [dm3] 3L_7842433_SNP [dm6]	A	G	4.226e^-4	0.799	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	18616931	2L_18616931_SNP [dm3] 2L_18616931_SNP [dm6]	A	T	4.227e^-4	0.799	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6924824	2R_6924824_DEL [dm3] 2R_11037319_DEL [dm6]	CACAAAT	C	4.240e^-4	0.799	INTRON luna
2R	13851901	2R_13851901_SNP [dm3] 2R_17964396_SNP [dm6]	C	A	4.245e^-4	0.799	INTERGENIC
2L	19679138	2L_19679138_SNP [dm3] 2L_19679138_SNP [dm6]	G	T	4.252e^-4	0.799	INTRON Lar
2R	12646371	2R_12646371_SNP [dm3] 2R_16758866_SNP [dm6]	T	G	4.257e^-4	0.799	INTRON unc-104
X	15204190	X_15204190_SNP [dm3] X_15310157_SNP [dm6]	T	A	4.259e^-4	0.799	INTRON gce
2R	4311316	2R_4311316_SNP [dm3] 2R_8423811_SNP [dm6]	C	A	4.264e^-4	0.799	INTRON CSN7
3R	7423445	3R_7423445_SNP [dm3] 3R_11597723_SNP [dm6]	A	G	4.267e^-4	0.799	INTRON Jupiter
3R	26119369	3R_26119369_SNP [dm3] 3R_30293647_SNP [dm6]	T	G	4.270e^-4	0.799	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12863013	3L_12863013_SNP [dm3] 3L_12869913_SNP [dm6]	T	A	4.276e^-4	0.799	INTERGENIC
3L	15116221	3L_15116221_SNP [dm3] 3L_15123121_SNP [dm6]	A	T	4.278e^-4	0.799	DOWNSTREAM CG32847 INTRON Cep135 & 1 other
3L	16327394	3L_16327394_SNP [dm3] 3L_16334294_SNP [dm6]	A	G	4.287e^-4	0.799	DOWNSTREAM CG13056 INTERGENIC
2L	18849559	2L_18849559_SNP [dm3] 2L_18849559_SNP [dm6]	C	T	4.289e^-4	0.799	INTRON CG17321
2L	3547536	2L_3547536_SNP [dm3] 2L_3547536_SNP [dm6]	A	C	4.299e^-4	0.799	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	45455	3L_45455_SNP [dm3] 3L_45455_SNP [dm6]	C	A	4.306e^-4	0.799	INTERGENIC	transposable element FlyBase
2L	14341967	2L_14341967_SNP [dm3] 2L_14341967_SNP [dm6]	T	A	4.310e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	25410922	3R_25410922_SNP [dm3] 3R_29585200_SNP [dm6]	C	T	4.319e^-4	0.799	INTERGENIC
3L	21052124	3L_21052124_INS [dm3] 3L_21059024_INS [dm6]	A	AA	4.328e^-4	0.799	UTR_5_PRIME siz INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5264023	X_5264023_SNP [dm3] X_5369990_SNP [dm6]	G	A	4.331e^-4	0.799	INTRON SK
3L	7406876	3L_7406876_SNP [dm3] 3L_7413776_SNP [dm6]	C	A	4.338e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12384085	3L_12384085_SNP [dm3] 3L_12390985_SNP [dm6]	C	T	4.340e^-4	0.799	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1843123	2R_1843123_SNP [dm3] 2R_5955618_SNP [dm6]	A	G	4.341e^-4	0.799	INTERGENIC
3R	13956058	3R_13956058_SNP [dm3] 3R_18130336_SNP [dm6]	A	G	4.345e^-4	0.799	INTRON sr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18055337	2R_18055337_SNP [dm3] 2R_22167832_SNP [dm6]	A	G	4.349e^-4	0.799	INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9484135	3L_9484135_SNP [dm3] 3L_9491035_SNP [dm6]	A	T	4.359e^-4	0.799	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11232028	3R_11232028_SNP [dm3] 3R_15406306_SNP [dm6]	G	T	4.364e^-4	0.799	UPSTREAM CG6125 INTRON CG6125
2L	4292242	2L_4292242_SNP [dm3] 2L_4292242_SNP [dm6]	G	A	4.381e^-4	0.799	INTRON tutl
3R	1613800	3R_1613800_SNP [dm3] 3R_5788078_SNP [dm6]	A	G	4.388e^-4	0.799	SYNONYMOUS_CODING CG2051 DOWNSTREAM kat-60L1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17758432	2R_17758432_SNP [dm3] 2R_21870927_SNP [dm6]	A	G	4.388e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15204827	X_15204827_SNP [dm3] X_15310794_SNP [dm6]	C	T	4.391e^-4	0.799	SYNONYMOUS_CODING gce	TF binding site mE1_TFBS_chinmo
2L	4984877	2L_4984877_SNP [dm3] 2L_4984877_SNP [dm6]	T	C	4.393e^-4	0.799	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
2L	11609659	2L_11609659_SNP [dm3] 2L_11609659_SNP [dm6]	A	T	4.395e^-4	0.799	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
X	5815539	X_5815539_SNP [dm3] X_5921506_SNP [dm6]	C	G	4.396e^-4	0.799	INTRON CG3726
X	10092841	X_10092841_DEL [dm3] X_10198808_DEL [dm6]	GA	G	4.407e^-4	0.799	INTRON CR44894
3L	5299866	3L_5299866_SNP [dm3] 3L_5306766_SNP [dm6]	A	C	4.407e^-4	0.799	INTERGENIC
3L	3249015	3L_3249015_DEL [dm3] 3L_3249015_DEL [dm6]	AAATAAGCAA	A	4.411e^-4	0.799	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5478514	3R_5478514_SNP [dm3] 3R_9652792_SNP [dm6]	T	A	4.415e^-4	0.799	UTR_3_PRIME CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
3L	19043563	3L_19043563_SNP [dm3] 3L_19050463_SNP [dm6]	T	C	4.415e^-4	0.799	DOWNSTREAM Acp76A INTERGENIC
3R	26080662	3R_26080662_SNP [dm3] 3R_30254940_SNP [dm6]	C	G	4.416e^-4	0.799	DOWNSTREAM CG18404 INTERGENIC
2R	12995688	2R_12995688_SNP [dm3] 2R_17108183_SNP [dm6]	G	T	4.417e^-4	0.799	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
2L	12811124	2L_12811124_SNP [dm3] 2L_12811124_SNP [dm6]	C	T	4.418e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4611820	3L_4611820_SNP [dm3] 3L_4611820_SNP [dm6]	C	A	4.418e^-4	0.799	INTRON Src64B
3L	1676146	3L_1676146_SNP [dm3] 3L_1676146_SNP [dm6]	G	T	4.421e^-4	0.799	INTRON CG7991
3L	20082356	3L_20082356_SNP [dm3] 3L_20089256_SNP [dm6]	C	T	4.422e^-4	0.799	UPSTREAM sNPF-R INTERGENIC
2L	11698363	2L_11698363_SNP [dm3] 2L_11698363_SNP [dm6]	T	G	4.426e^-4	0.799	INTERGENIC
2L	19953658	2L_19953658_SNP [dm3] 2L_19953658_SNP [dm6]	G	A	4.428e^-4	0.799	INTRON sick
3L	16996097	3L_16996097_SNP [dm3] 3L_17002997_SNP [dm6]	G	A	4.431e^-4	0.799	UPSTREAM CG3764 INTRON CG3764
3L	6647112	3L_6647112_SNP [dm3] 3L_6654012_SNP [dm6]	C	G	4.434e^-4	0.799	INTERGENIC
3R	21628837	3R_21628837_SNP [dm3] 3R_25803115_SNP [dm6]	G	T	4.436e^-4	0.799	INTERGENIC
2L	6014025	2L_6014025_INS [dm3] 2L_6014025_INS [dm6]	G	GCTG	4.437e^-4	0.799	CODON_INSERTION H2.0
2R	14363281	2R_14363281_SNP [dm3] 2R_18475776_SNP [dm6]	C	T	4.438e^-4	0.799	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4421177	3L_4421177_SNP [dm3] 3L_4421177_SNP [dm6]	A	T	4.444e^-4	0.799	UPSTREAM CG15020 DOWNSTREAM DOR INTERGENIC
2L	7085459	2L_7085459_SNP [dm3] 2L_7085459_SNP [dm6]	C	T	4.468e^-4	0.799	UPSTREAM Pvf2 INTERGENIC
3R	8150368	3R_8150368_SNP [dm3] 3R_12324646_SNP [dm6]	C	T	4.470e^-4	0.799	SYNONYMOUS_CODING CG10013
2L	4372845	2L_4372845_SNP [dm3] 2L_4372845_SNP [dm6]	C	T	4.471e^-4	0.799	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	10609439	3R_10609439_SNP [dm3] 3R_14783717_SNP [dm6]	G	A	4.475e^-4	0.799	INTRON jvl
2R	2391289	2R_2391289_SNP [dm3] 2R_6503784_SNP [dm6]	T	A	4.492e^-4	0.799	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11932578	2R_11932578_SNP [dm3] 2R_16045073_SNP [dm6]	G	A	4.497e^-4	0.799	SPLICE_SITE_REGION SP2353 INTRON SP2353
3R	23990653	3R_23990653_SNP [dm3] 3R_28164931_SNP [dm6]	A	T	4.501e^-4	0.799	INTRON CG34354
3R	23990655	3R_23990655_SNP [dm3] 3R_28164933_SNP [dm6]	T	G	4.501e^-4	0.799	INTRON CG34354
3R	23990658	3R_23990658_SNP [dm3] 3R_28164936_SNP [dm6]	T	G	4.501e^-4	0.799	INTRON CG34354
3R	23990659	3R_23990659_SNP [dm3] 3R_28164937_SNP [dm6]	T	A	4.501e^-4	0.799	INTRON CG34354
2L	18456014	2L_18456014_DEL [dm3] 2L_18456014_DEL [dm6]	TT	T	4.501e^-4	0.799	DOWNSTREAM Ntf-2r INTRON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9867609	3R_9867609_SNP [dm3] 3R_14041887_SNP [dm6]	A	T	4.506e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19138775	3L_19138775_SNP [dm3] 3L_19145675_SNP [dm6]	G	C	4.508e^-4	0.799	SYNONYMOUS_CODING fz2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11611682	3R_11611682_SNP [dm3] 3R_15785960_SNP [dm6]	G	T	4.513e^-4	0.799	UPSTREAM CG9590 INTERGENIC
3L	1795822	3L_1795822_SNP [dm3] 3L_1795822_SNP [dm6]	A	G	4.515e^-4	0.799	SYNONYMOUS_CODING Cdc37 UPSTREAM alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1219348	3L_1219348_SNP [dm3] 3L_1219348_SNP [dm6]	T	G	4.517e^-4	0.799	UPSTREAM LysP INTRON mwh
X	2110188	X_2110188_SNP [dm3] X_2216155_SNP [dm6]	C	T	4.521e^-4	0.799	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	19043600	3L_19043600_SNP [dm3] 3L_19050500_SNP [dm6]	C	G	4.524e^-4	0.799	DOWNSTREAM Acp76A INTERGENIC
3R	21628857	3R_21628857_DEL [dm3] 3R_25803135_DEL [dm6]	TTTGATGTTAA...	T	4.529e^-4	0.799	INTERGENIC
3L	10727499	3L_10727499_SNP [dm3] 3L_10734399_SNP [dm6]	C	A	4.531e^-4	0.799	INTERGENIC
3R	21326734	3R_21326734_SNP [dm3] 3R_25501012_SNP [dm6]	T	C	4.533e^-4	0.799	DOWNSTREAM CR43456 INTERGENIC
2L	4294517	2L_4294517_SNP [dm3] 2L_4294517_SNP [dm6]	T	G	4.535e^-4	0.799	INTRON tutl
X	4099366	X_4099366_SNP [dm3] X_4205333_SNP [dm6]	C	T	4.540e^-4	0.799	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14342011	2L_14342011_MNP [dm3] 2L_14342011_MNP [dm6]	AAA	GGG	4.548e^-4	0.799	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	7765031	2L_7765031_SNP [dm3] 2L_7765031_SNP [dm6]	G	A	4.553e^-4	0.799	SYNONYMOUS_CODING CG7196
2L	11915552	2L_11915552_DEL [dm3] 2L_11915552_DEL [dm6]	ACCACCA	A	4.553e^-4	0.799	INTRON Pde1c
3L	7086548	3L_7086548_SNP [dm3] 3L_7093448_SNP [dm6]	T	C	4.554e^-4	0.799	SYNONYMOUS_CODING Cpr65Ec	TF binding site mE1_TFBS_inv
2L	1953783	2L_1953783_SNP [dm3] 2L_1953783_SNP [dm6]	C	A	4.556e^-4	0.799	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17024291	3L_17024291_SNP [dm3] 3L_17031191_SNP [dm6]	G	T	4.558e^-4	0.799	DOWNSTREAM CR45756 INTRON Ilp8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5340790	2L_5340790_SNP [dm3] 2L_5340790_SNP [dm6]	T	C	4.560e^-4	0.799	SYNONYMOUS_CODING CG12512	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo

By genomic position
Variant impact
Gene name

mn_Resp_d_Carvone phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results