DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.401e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05015
In_3R_P	0.08983

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.8081	0.0548

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2855 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13753467	2L_13753467_SNP [dm3] 2L_13753467_SNP [dm6]	C	A	2.497e^-8	0.047	INTRON CR44846 & 1 other EXON CR44846
2R	18535943	2R_18535943_SNP [dm3] 2R_22648438_SNP [dm6]	G	A	3.113e^-7	0.284	NON_SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3L	8411070	3L_8411070_SNP [dm3] 3L_8417970_SNP [dm6]	A	G	4.535e^-7	0.284	INTRON CG32354
2L	488234	2L_488234_SNP [dm3] 2L_488234_SNP [dm6]	A	T	1.362e^-6	0.549	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5973162	3R_5973162_SNP [dm3] 3R_10147440_SNP [dm6]	A	C	2.024e^-6	0.549	INTRON Invadolysin
3L	10302292	3L_10302292_SNP [dm3] 3L_10309192_SNP [dm6]	C	T	3.934e^-6	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7805497	2L_7805497_SNP [dm3] 2L_7805497_SNP [dm6]	G	C	4.528e^-6	0.549	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5973299	3R_5973299_SNP [dm3] 3R_10147577_SNP [dm6]	C	G	4.912e^-6	0.549	INTRON Invadolysin
3R	5973315	3R_5973315_SNP [dm3] 3R_10147593_SNP [dm6]	A	G	5.273e^-6	0.549	INTRON Invadolysin
2R	17878082	2R_17878082_SNP [dm3] 2R_21990577_SNP [dm6]	C	A	5.357e^-6	0.549	INTRON CG34370
2L	12900449	2L_12900449_SNP [dm3] 2L_12900449_SNP [dm6]	T	A	5.616e^-6	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11878391	2R_11878391_SNP [dm3] 2R_15990886_SNP [dm6]	C	G	6.058e^-6	0.549	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12796966	2L_12796966_SNP [dm3] 2L_12796966_SNP [dm6]	C	G	6.099e^-6	0.549	INTERGENIC
3L	10302302	3L_10302302_SNP [dm3] 3L_10309202_SNP [dm6]	C	A	6.484e^-6	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5611852	3L_5611852_SNP [dm3] 3L_5618752_SNP [dm6]	G	T	6.505e^-6	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3292837	3R_3292837_SNP [dm3] 3R_7467115_SNP [dm6]	G	A	6.960e^-6	0.549	DOWNSTREAM CR44934 INTERGENIC
2L	5861821	2L_5861821_SNP [dm3] 2L_5861821_SNP [dm6]	T	A	6.989e^-6	0.549	INTRON rau
3L	5611774	3L_5611774_SNP [dm3] 3L_5618674_SNP [dm6]	T	C	7.393e^-6	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11326823	3R_11326823_SNP [dm3] 3R_15501101_SNP [dm6]	G	T	8.085e^-6	0.549	INTERGENIC
2R	18534249	2R_18534249_SNP [dm3] 2R_22646744_SNP [dm6]	C	T	8.281e^-6	0.549	SYNONYMOUS_CODING CG30195 UPSTREAM CG2852 DOWNSTREAM CG34446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16915586	3L_16915586_SNP [dm3] 3L_16922486_SNP [dm6]	C	A	8.356e^-6	0.549	UTR_3_PRIME Lmpt UPSTREAM CG13028
2R	2811918	2R_2811918_SNP [dm3] 2R_6924413_SNP [dm6]	C	A	8.377e^-6	0.549	NON_SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	5861832	2L_5861832_INS [dm3] 2L_5861832_INS [dm6]	A	AAGATA	8.575e^-6	0.549	INTRON rau
2R	17878083	2R_17878083_SNP [dm3] 2R_21990578_SNP [dm6]	C	A	8.807e^-6	0.549	INTRON CG34370
3R	27577732	3R_27577732_SNP [dm3] 3R_31752010_SNP [dm6]	C	T	9.158e^-6	0.549	SYNONYMOUS_CODING salt DOWNSTREAM CG1910
2L	18108552	2L_18108552_SNP [dm3] 2L_18108552_SNP [dm6]	G	C	9.933e^-6	0.549	INTERGENIC
3R	10505796	3R_10505796_SNP [dm3] 3R_14680074_SNP [dm6]	T	G	1.003e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	27581525	3R_27581525_SNP [dm3] 3R_31755803_SNP [dm6]	C	T	1.059e^-5	0.549	INTRON CG2187	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10509180	3R_10509180_SNP [dm3] 3R_14683458_SNP [dm6]	A	T	1.062e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	5861808	2L_5861808_SNP [dm3] 2L_5861808_SNP [dm6]	A	G	1.093e^-5	0.549	INTRON rau
3R	10510327	3R_10510327_SNP [dm3] 3R_14684605_SNP [dm6]	A	T	1.126e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	3307796	3R_3307796_SNP [dm3] 3R_7482074_SNP [dm6]	T	C	1.142e^-5	0.549	INTERGENIC
3R	3307774	3R_3307774_SNP [dm3] 3R_7482052_SNP [dm6]	T	A	1.186e^-5	0.549	INTERGENIC
3L	5611855	3L_5611855_SNP [dm3] 3L_5618755_SNP [dm6]	A	G	1.202e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13692502	2R_13692502_SNP [dm3] 2R_17804997_SNP [dm6]	A	G	1.248e^-5	0.549	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5611849	3L_5611849_SNP [dm3] 3L_5618749_SNP [dm6]	A	G	1.282e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9272070	2L_9272070_SNP [dm3] 2L_9272070_SNP [dm6]	G	C	1.303e^-5	0.549	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	12799611	2L_12799611_SNP [dm3] 2L_12799611_SNP [dm6]	T	C	1.312e^-5	0.549	INTERGENIC
3R	3267777	3R_3267777_SNP [dm3] 3R_7442055_SNP [dm6]	G	A	1.326e^-5	0.549	DOWNSTREAM CG14598 INTERGENIC
3R	11337874	3R_11337874_SNP [dm3] 3R_15512152_SNP [dm6]	G	C	1.410e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	18330144	X_18330144_SNP [dm3] X_18436111_SNP [dm6]	C	T	1.447e^-5	0.549	NON_SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
3L	10302252	3L_10302252_SNP [dm3] 3L_10309152_SNP [dm6]	G	A	1.525e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10509226	3R_10509226_SNP [dm3] 3R_14683504_SNP [dm6]	A	T	1.530e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	1.552e^-5	0.549	INTERGENIC
3L	13922496	3L_13922496_SNP [dm3] 3L_13929396_SNP [dm6]	C	T	1.610e^-5	0.549	UTR_5_PRIME Gl UPSTREAM CG8833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	859037	3R_859037_SNP [dm3] 3R_5033315_SNP [dm6]	T	C	1.649e^-5	0.549	INTERGENIC
2L	4205365	2L_4205365_SNP [dm3] 2L_4205365_SNP [dm6]	G	A	1.715e^-5	0.549	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	9364553	3R_9364553_SNP [dm3] 3R_13538831_SNP [dm6]	G	A	1.726e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1694850	3L_1694850_SNP [dm3] 3L_1694850_SNP [dm6]	T	A	1.731e^-5	0.549	NON_SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	27523558	3R_27523558_SNP [dm3] 3R_31697836_SNP [dm6]	G	A	1.740e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
3L	10302256	3L_10302256_SNP [dm3] 3L_10309156_SNP [dm6]	A	T	1.873e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10302262	3L_10302262_SNP [dm3] 3L_10309162_SNP [dm6]	A	G	1.971e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10529540	2L_10529540_SNP [dm3] 2L_10529540_SNP [dm6]	T	A	2.020e^-5	0.549	NON_SYNONYMOUS_CODING Lip4 INTRON Lip4
3L	14973168	3L_14973168_SNP [dm3] 3L_14980068_SNP [dm6]	A	T	2.074e^-5	0.549	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
3R	3267739	3R_3267739_SNP [dm3] 3R_7442017_SNP [dm6]	T	G	2.109e^-5	0.549	DOWNSTREAM CG14598 INTERGENIC
2R	19553588	2R_19553588_SNP [dm3] 2R_23666065_SNP [dm6]	T	G	2.180e^-5	0.549	INTRON Pde8	TF binding site mE1_TFBS_Trl
3R	1538776	3R_1538776_SNP [dm3] 3R_5713054_SNP [dm6]	C	T	2.208e^-5	0.549	UTR_3_PRIME cas DOWNSTREAM plx
2R	11874423	2R_11874423_SNP [dm3] 2R_15986918_SNP [dm6]	A	G	2.245e^-5	0.549	UPSTREAM CR45021 INTRON Strn-Mlck
2L	12908674	2L_12908674_SNP [dm3] 2L_12908674_SNP [dm6]	G	T	2.248e^-5	0.549	INTERGENIC
3R	3295658	3R_3295658_DEL [dm3] 3R_7469936_DEL [dm6]	AGAGCAAA	A	2.322e^-5	0.549	INTERGENIC
3R	27580713	3R_27580713_SNP [dm3] 3R_31754991_SNP [dm6]	C	T	2.333e^-5	0.549	UPSTREAM salt DOWNSTREAM CG2187 INTERGENIC
3R	2748710	3R_2748710_SNP [dm3] 3R_6922988_SNP [dm6]	A	T	2.336e^-5	0.549	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2R	15401811	2R_15401811_SNP [dm3] 2R_19514306_SNP [dm6]	C	T	2.386e^-5	0.549	UPSTREAM Ir56d INTERGENIC
2L	16764221	2L_16764221_SNP [dm3] 2L_16764221_SNP [dm6]	G	A	2.391e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10875743	3R_10875743_SNP [dm3] 3R_15050021_SNP [dm6]	C	T	2.393e^-5	0.549	INTERGENIC
2R	9260148	2R_9260148_SNP [dm3] 2R_13372643_SNP [dm6]	G	A	2.408e^-5	0.549	INTERGENIC
3R	8778426	3R_8778426_SNP [dm3] 3R_12952704_SNP [dm6]	T	C	2.487e^-5	0.549	INTRON grsm
2L	4110941	2L_4110941_SNP [dm3] 2L_4110941_SNP [dm6]	A	C	2.502e^-5	0.549	INTRON ed	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16915598	3L_16915598_SNP [dm3] 3L_16922498_SNP [dm6]	T	G	2.502e^-5	0.549	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
3R	26634477	3R_26634477_SNP [dm3] 3R_30808755_SNP [dm6]	C	T	2.520e^-5	0.549	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb
X	5577426	X_5577426_SNP [dm3] X_5683393_SNP [dm6]	T	C	2.530e^-5	0.549	NON_SYNONYMOUS_CODING CG42449 DOWNSTREAM Gr5a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13753488	2L_13753488_SNP [dm3] 2L_13753488_SNP [dm6]	A	G	2.584e^-5	0.549	INTRON CR44846 & 1 other EXON CR44846
2R	10720127	2R_10720127_DEL [dm3] 2R_14832622_DEL [dm6]	GGTTCT	G	2.587e^-5	0.549	UPSTREAM CG10205 INTERGENIC
3R	3274115	3R_3274115_SNP [dm3] 3R_7448393_SNP [dm6]	C	T	2.760e^-5	0.549	INTERGENIC
2L	16619531	2L_16619531_SNP [dm3] 2L_16619531_SNP [dm6]	G	A	2.762e^-5	0.549	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3252824	3R_3252824_SNP [dm3] 3R_7427102_SNP [dm6]	C	T	2.792e^-5	0.549	INTERGENIC
X	15087816	X_15087816_MNP [dm3] X_15193783_MNP [dm6]	TCCAC	GTAGA	2.801e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12911347	2L_12911347_SNP [dm3] 2L_12911347_SNP [dm6]	A	T	2.813e^-5	0.549	INTERGENIC
3R	27027464	3R_27027464_SNP [dm3] 3R_31201742_SNP [dm6]	A	G	2.819e^-5	0.549	SYNONYMOUS_CODING CG1544
3R	24205494	3R_24205494_SNP [dm3] 3R_28379772_SNP [dm6]	T	G	2.841e^-5	0.549	INTERGENIC
2L	16696824	2L_16696824_SNP [dm3] 2L_16696824_SNP [dm6]	A	C	2.865e^-5	0.549	DOWNSTREAM CR44975 INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2390352	X_2390352_SNP [dm3] X_2496319_SNP [dm6]	G	T	2.866e^-5	0.549	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21907896	X_21907896_SNP [dm3] X_22506060_SNP [dm6]	G	A	2.875e^-5	0.549	SYNONYMOUS_CODING l_1_G0196
3R	3286503	3R_3286503_SNP [dm3] 3R_7460781_SNP [dm6]	A	T	2.892e^-5	0.549	INTERGENIC
2L	4865254	2L_4865254_SNP [dm3] 2L_4865254_SNP [dm6]	G	A	2.921e^-5	0.549	UTR_5_PRIME pog	TF binding site mE1_TFBS_inv
2L	18108783	2L_18108783_SNP [dm3] 2L_18108783_SNP [dm6]	G	A	2.927e^-5	0.549	INTERGENIC
2L	18180395	2L_18180395_SNP [dm3] 2L_18180395_SNP [dm6]	A	T	2.937e^-5	0.549	DOWNSTREAM CG7180 INTRON CG42750
3R	10511351	3R_10511351_SNP [dm3] 3R_14685629_SNP [dm6]	C	G	2.979e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6026780	3L_6026780_SNP [dm3] 3L_6033680_SNP [dm6]	C	T	3.010e^-5	0.549	UTR_3_PRIME CG10477
3L	14973157	3L_14973157_SNP [dm3] 3L_14980057_SNP [dm6]	T	G	3.031e^-5	0.549	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
X	22155423	X_22155423_SNP [dm3] X_22753587_SNP [dm6]	T	C	3.048e^-5	0.549	INTRON CR44997	transposable element FlyBase
3L	14973147	3L_14973147_SNP [dm3] 3L_14980047_SNP [dm6]	A	G	3.064e^-5	0.549	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
2L	12797294	2L_12797294_SNP [dm3] 2L_12797294_SNP [dm6]	G	A	3.102e^-5	0.549	INTERGENIC
2L	2572928	2L_2572928_SNP [dm3] 2L_2572928_SNP [dm6]	T	C	3.110e^-5	0.549	NON_SYNONYMOUS_CODING Cyp309a2 DOWNSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	13651397	3R_13651397_SNP [dm3] 3R_17825675_SNP [dm6]	T	C	3.137e^-5	0.549	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23316920	3R_23316920_SNP [dm3] 3R_27491198_SNP [dm6]	G	T	3.239e^-5	0.549	INTERGENIC
3L	16915659	3L_16915659_SNP [dm3] 3L_16922559_SNP [dm6]	G	A	3.320e^-5	0.549	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
2R	18221617	2R_18221617_SNP [dm3] 2R_22334112_SNP [dm6]	C	A	3.334e^-5	0.549	UTR_3_PRIME Liprin-gamma DOWNSTREAM CG34208
2L	12799708	2L_12799708_SNP [dm3] 2L_12799708_SNP [dm6]	G	A	3.418e^-5	0.549	INTERGENIC
2L	10850295	2L_10850295_SNP [dm3] 2L_10850295_SNP [dm6]	C	T	3.427e^-5	0.549	UTR_5_PRIME porin INTRON porin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27026900	3R_27026900_SNP [dm3] 3R_31201178_SNP [dm6]	T	A	3.437e^-5	0.549	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_cad
3L	1694786	3L_1694786_SNP [dm3] 3L_1694786_SNP [dm6]	A	C	3.440e^-5	0.549	NON_SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	860665	3R_860665_SNP [dm3] 3R_5034943_SNP [dm6]	A	T	3.454e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16910021	3R_16910021_SNP [dm3] 3R_21084299_SNP [dm6]	G	T	3.500e^-5	0.549	INTRON RhoGAP93B
2R	10720126	2R_10720126_INS [dm3] 2R_14832621_INS [dm6]	G	GAGAACCCTCTTGAACT...	3.508e^-5	0.549	UPSTREAM CG10205 INTERGENIC
2L	3657896	2L_3657896_SNP [dm3] 2L_3657896_SNP [dm6]	T	C	3.514e^-5	0.549	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1609677	2L_1609677_SNP [dm3] 2L_1609677_SNP [dm6]	G	T	3.544e^-5	0.549	INTRON CG31935	TF binding site mE1_TFBS_cad
2L	12797735	2L_12797735_SNP [dm3] 2L_12797735_SNP [dm6]	A	T	3.564e^-5	0.549	INTERGENIC
2R	10404293	2R_10404293_SNP [dm3] 2R_14516788_SNP [dm6]	G	A	3.587e^-5	0.549	INTERGENIC
3R	22667757	3R_22667757_SNP [dm3] 3R_26842035_SNP [dm6]	A	T	3.592e^-5	0.549	UTR_3_PRIME Tl DOWNSTREAM Lerp & 1 other
3R	27570199	3R_27570199_SNP [dm3] 3R_31744477_SNP [dm6]	G	C	3.611e^-5	0.549	SYNONYMOUS_CODING CG1896 DOWNSTREAM awd & 1 other	TF binding site BDTNP1_TFBS_dl
2R	1772354	2R_1772354_SNP [dm3] 2R_5884849_SNP [dm6]	C	T	3.620e^-5	0.549	UPSTREAM CR44125 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	11879425	2R_11879425_SNP [dm3] 2R_15991920_SNP [dm6]	A	G	3.628e^-5	0.549	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	17571248	2L_17571248_SNP [dm3] 2L_17571248_SNP [dm6]	T	C	3.654e^-5	0.549	INTERGENIC
2L	3657900	2L_3657900_SNP [dm3] 2L_3657900_SNP [dm6]	C	G	3.685e^-5	0.549	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26693124	3R_26693124_SNP [dm3] 3R_30867402_SNP [dm6]	C	G	3.722e^-5	0.549	UPSTREAM Cpr100A INTERGENIC
3L	5611856	3L_5611856_SNP [dm3] 3L_5618756_SNP [dm6]	T	A	3.831e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3547536	2L_3547536_SNP [dm3] 2L_3547536_SNP [dm6]	A	C	3.841e^-5	0.549	UTR_3_PRIME drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12901026	2L_12901026_SNP [dm3] 2L_12901026_SNP [dm6]	A	G	3.848e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_cad
X	15087804	X_15087804_SNP [dm3] X_15193771_SNP [dm6]	C	A	3.877e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12901103	2L_12901103_SNP [dm3] 2L_12901103_SNP [dm6]	T	A	3.902e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_cad
X	2390262	X_2390262_SNP [dm3] X_2496229_SNP [dm6]	A	G	3.946e^-5	0.549	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9371300	2L_9371300_SNP [dm3] 2L_9371300_SNP [dm6]	A	G	3.978e^-5	0.549	UTR_3_PRIME Shawl UPSTREAM CR43865
2R	11878259	2R_11878259_SNP [dm3] 2R_15990754_SNP [dm6]	G	A	3.984e^-5	0.549	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9651907	3R_9651907_SNP [dm3] 3R_13826185_SNP [dm6]	G	T	4.008e^-5	0.549	DOWNSTREAM Mst87F INTERGENIC
X	15087811	X_15087811_SNP [dm3] X_15193778_SNP [dm6]	A	T	4.041e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9367504	2L_9367504_DEL [dm3] 2L_9367504_DEL [dm6]	TA	T	4.049e^-5	0.549	UPSTREAM CG34181 INTERGENIC
2R	14996845	2R_14996845_SNP [dm3] 2R_19109340_SNP [dm6]	T	C	4.060e^-5	0.549	INTRON 5-HT1A
2R	19553589	2R_19553589_SNP [dm3] 2R_23666066_SNP [dm6]	T	C	4.118e^-5	0.549	INTRON Pde8	TF binding site mE1_TFBS_Trl
X	15496345	X_15496345_SNP [dm3] X_15602312_SNP [dm6]	G	T	4.130e^-5	0.549	DOWNSTREAM sog INTERGENIC
3R	3294726	3R_3294726_SNP [dm3] 3R_7469004_SNP [dm6]	A	G	4.189e^-5	0.549	UPSTREAM CR44934 INTERGENIC
3L	10302275	3L_10302275_SNP [dm3] 3L_10309175_SNP [dm6]	A	T	4.196e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12797215	2L_12797215_SNP [dm3] 2L_12797215_SNP [dm6]	C	T	4.198e^-5	0.549	INTERGENIC
2R	11877637	2R_11877637_SNP [dm3] 2R_15990132_SNP [dm6]	A	G	4.201e^-5	0.549	UPSTREAM Strn-Mlck INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18535991	2R_18535991_INS [dm3] 2R_22648486_INS [dm6]	C	CCAAGAA	4.219e^-5	0.549	UPSTREAM CG34446 & 1 other DOWNSTREAM CG3746 INTERGENIC
X	21922359	X_21922359_INS [dm3] X_22520523_INS [dm6]	T	TG	4.308e^-5	0.549	INTRON CG17600
3R	23316898	3R_23316898_SNP [dm3] 3R_27491176_SNP [dm6]	G	T	4.319e^-5	0.549	INTERGENIC
3R	3271000	3R_3271000_SNP [dm3] 3R_7445278_SNP [dm6]	T	G	4.336e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18303786	2R_18303786_SNP [dm3] 2R_22416281_SNP [dm6]	G	C	4.338e^-5	0.549	SYNONYMOUS_CODING qkr58E-2 UPSTREAM qkr58E-1 EXON CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16985358	3R_16985358_SNP [dm3] 3R_21159636_SNP [dm6]	G	A	4.347e^-5	0.549	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
3R	27577487	3R_27577487_SNP [dm3] 3R_31751765_SNP [dm6]	G	A	4.360e^-5	0.549	UTR_3_PRIME CG1910 DOWNSTREAM salt
X	2752897	X_2752897_SNP [dm3] X_2858864_SNP [dm6]	T	A	4.362e^-5	0.549	INTRON kirre
3R	26694765	3R_26694765_SNP [dm3] 3R_30869043_SNP [dm6]	C	T	4.363e^-5	0.549	UTR_3_PRIME Cpr100A
2L	8411203	2L_8411203_SNP [dm3] 2L_8411203_SNP [dm6]	C	A	4.374e^-5	0.549	NON_SYNONYMOUS_CODING CG13397 DOWNSTREAM CG13398	TF binding site mE1_TFBS_Trl
2L	12909181	2L_12909181_SNP [dm3] 2L_12909181_SNP [dm6]	A	T	4.376e^-5	0.549	INTERGENIC
2L	12798115	2L_12798115_SNP [dm3] 2L_12798115_SNP [dm6]	C	G	4.393e^-5	0.549	INTERGENIC
X	8142664	X_8142664_SNP [dm3] X_8248631_SNP [dm6]	G	A	4.434e^-5	0.549	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	3392282	2L_3392282_SNP [dm3] 2L_3392282_SNP [dm6]	G	C	4.489e^-5	0.549	INTERGENIC
3L	7796541	3L_7796541_SNP [dm3] 3L_7803441_SNP [dm6]	G	C	4.529e^-5	0.549	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10302289	3L_10302289_SNP [dm3] 3L_10309189_SNP [dm6]	T	G	4.544e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3306571	3R_3306571_DEL [dm3] 3R_7480849_DEL [dm6]	AG	A	4.586e^-5	0.549	INTERGENIC
2L	12901084	2L_12901084_DEL [dm3] 2L_12901084_DEL [dm6]	ACGG	A	4.600e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3295570	3R_3295570_SNP [dm3] 3R_7469848_SNP [dm6]	C	T	4.619e^-5	0.549	INTERGENIC
3R	3295571	3R_3295571_SNP [dm3] 3R_7469849_SNP [dm6]	A	T	4.619e^-5	0.549	INTERGENIC
3R	26084804	3R_26084804_SNP [dm3] 3R_30259082_SNP [dm6]	C	T	4.620e^-5	0.549	INTERGENIC
2L	16621564	2L_16621564_SNP [dm3] 2L_16621564_SNP [dm6]	C	T	4.643e^-5	0.549	INTRON CG42389	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	21226149	X_21226149_SNP [dm3] X_21355122_SNP [dm6]	C	G	4.664e^-5	0.549	NON_SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3905887	2L_3905887_SNP [dm3] 2L_3905887_SNP [dm6]	C	T	4.664e^-5	0.549	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5398229	2L_5398229_SNP [dm3] 2L_5398229_SNP [dm6]	A	T	4.703e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3645127	2L_3645127_SNP [dm3] 2L_3645127_SNP [dm6]	C	T	4.704e^-5	0.549	INTRON for
2L	17571270	2L_17571270_SNP [dm3] 2L_17571270_SNP [dm6]	C	T	4.793e^-5	0.549	INTERGENIC
2R	18101348	2R_18101348_SNP [dm3] 2R_22213843_SNP [dm6]	G	A	4.838e^-5	0.549	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	8854675	3L_8854675_DEL [dm3] 3L_8861575_DEL [dm6]	TAATAAAGTTTATGATAAAT...	T	4.892e^-5	0.549	INTRON dally
3L	22410565	3L_22410565_SNP [dm3] 3L_22417465_SNP [dm6]	A	T	4.940e^-5	0.549	INTERGENIC
2L	503551	2L_503551_SNP [dm3] 2L_503551_SNP [dm6]	G	A	4.984e^-5	0.549	INTRON ush
2L	5397552	2L_5397552_SNP [dm3] 2L_5397552_SNP [dm6]	C	T	5.047e^-5	0.549	INTERGENIC
X	21226096	X_21226096_SNP [dm3] X_21355069_SNP [dm6]	T	C	5.048e^-5	0.549	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6374355	3L_6374355_SNP [dm3] 3L_6381255_SNP [dm6]	C	T	5.063e^-5	0.549	INTERGENIC
2L	12908658	2L_12908658_SNP [dm3] 2L_12908658_SNP [dm6]	C	G	5.126e^-5	0.549	INTERGENIC
X	5578818	X_5578818_SNP [dm3] X_5684785_SNP [dm6]	G	A	5.187e^-5	0.549	DOWNSTREAM CG3160 & 1 other INTERGENIC
3R	8778790	3R_8778790_SNP [dm3] 3R_12953068_SNP [dm6]	T	C	5.193e^-5	0.549	INTRON grsm
2L	2588050	2L_2588050_SNP [dm3] 2L_2588050_SNP [dm6]	T	C	5.198e^-5	0.549	INTERGENIC
2L	12912458	2L_12912458_SNP [dm3] 2L_12912458_SNP [dm6]	T	G	5.213e^-5	0.549	UPSTREAM ACXC INTERGENIC
3R	13651396	3R_13651396_SNP [dm3] 3R_17825674_SNP [dm6]	A	C	5.238e^-5	0.549	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18588940	2R_18588940_SNP [dm3] 2R_22701435_SNP [dm6]	T	C	5.257e^-5	0.549	UTR_3_PRIME CG30259 UPSTREAM robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_kn
2R	19874814	2R_19874814_SNP [dm3] 2R_23987291_SNP [dm6]	G	C	5.273e^-5	0.549	UTR_3_PRIME CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	2390278	X_2390278_SNP [dm3] X_2496245_SNP [dm6]	G	A	5.280e^-5	0.549	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14996911	2R_14996911_SNP [dm3] 2R_19109406_SNP [dm6]	A	T	5.306e^-5	0.549	INTRON 5-HT1A
2L	12901093	2L_12901093_SNP [dm3] 2L_12901093_SNP [dm6]	G	A	5.332e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9366010	2R_9366010_INS [dm3] 2R_13478505_INS [dm6]	T	TTT	5.344e^-5	0.549	DOWNSTREAM CG43192 INTRON arr
2R	15565356	2R_15565356_SNP [dm3] 2R_19677851_SNP [dm6]	A	C	5.434e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3259844	3R_3259844_SNP [dm3] 3R_7434122_SNP [dm6]	T	C	5.605e^-5	0.549	INTERGENIC
3L	16915733	3L_16915733_SNP [dm3] 3L_16922633_SNP [dm6]	T	G	5.631e^-5	0.549	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
2L	499256	2L_499256_SNP [dm3] 2L_499256_SNP [dm6]	G	A	5.687e^-5	0.549	INTRON ush
2L	8603313	2L_8603313_SNP [dm3] 2L_8603313_SNP [dm6]	T	G	5.738e^-5	0.549	INTRON Sema-1a
3R	10287060	3R_10287060_SNP [dm3] 3R_14461338_SNP [dm6]	T	A	5.740e^-5	0.549	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
X	18413295	X_18413295_SNP [dm3] X_18519262_SNP [dm6]	A	C	5.750e^-5	0.549	INTRON Bx & 1 other	TF binding site mE1_TFBS_chinmo
3L	10854449	3L_10854449_SNP [dm3] 3L_10861349_SNP [dm6]	G	C	5.756e^-5	0.549	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	8096614	X_8096614_SNP [dm3] X_8202581_SNP [dm6]	C	T	5.800e^-5	0.549	INTRON sdt	TF binding site mE1_TFBS_inv
2L	3490648	2L_3490648_SNP [dm3] 2L_3490648_SNP [dm6]	C	A	5.807e^-5	0.549	INTRON CG15414
2R	11879857	2R_11879857_SNP [dm3] 2R_15992352_SNP [dm6]	A	T	5.870e^-5	0.549	UTR_5_PRIME Pex11 UPSTREAM CG8320	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	20140803	2R_20140803_SNP [dm3] 2R_24253280_SNP [dm6]	G	C	5.896e^-5	0.549	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5984434	3L_5984434_SNP [dm3] 3L_5991334_SNP [dm6]	A	T	5.903e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12797629	2L_12797629_SNP [dm3] 2L_12797629_SNP [dm6]	G	C	5.955e^-5	0.549	INTERGENIC
2R	13533146	2R_13533146_SNP [dm3] 2R_17645641_SNP [dm6]	A	G	5.967e^-5	0.549	INTERGENIC
2L	10241686	2L_10241686_SNP [dm3] 2L_10241686_SNP [dm6]	G	A	5.986e^-5	0.549	SYNONYMOUS_CODING me31B UPSTREAM CR44995 DOWNSTREAM chico	TF binding site mE1_TFBS_sens
X	18413124	X_18413124_SNP [dm3] X_18519091_SNP [dm6]	C	T	5.999e^-5	0.549	SYNONYMOUS_CODING Aats-his INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	3301386	3R_3301386_SNP [dm3] 3R_7475664_SNP [dm6]	G	T	6.012e^-5	0.549	UPSTREAM snRNA:7SK DOWNSTREAM tRNA:V3b:84Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
2L	8053369	2L_8053369_SNP [dm3] 2L_8053369_SNP [dm6]	C	G	6.035e^-5	0.549	UTR_3_PRIME CG7466 DOWNSTREAM poe
2R	7526147	2R_7526147_DEL [dm3] 2R_11638642_DEL [dm6]	CAGAGCTTCTTTGTCTC...	C	6.065e^-5	0.549	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12901312	2L_12901312_SNP [dm3] 2L_12901312_SNP [dm6]	G	A	6.075e^-5	0.549	INTERGENIC
2R	5091916	2R_5091916_SNP [dm3] 2R_9204411_SNP [dm6]	G	A	6.079e^-5	0.549	UTR_3_PRIME CG8027
2R	20024544	2R_20024544_SNP [dm3] 2R_24137021_SNP [dm6]	G	A	6.085e^-5	0.549	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12933310	2R_12933310_SNP [dm3] 2R_17045805_SNP [dm6]	A	G	6.100e^-5	0.549	SYNONYMOUS_CODING CG9640	TF binding site mE1_TFBS_sens
2L	2824606	2L_2824606_SNP [dm3] 2L_2824606_SNP [dm6]	T	C	6.116e^-5	0.549	NON_SYNONYMOUS_CODING CG3123 INTRON Duox	TF binding site mE1_TFBS_sens
2R	15401794	2R_15401794_SNP [dm3] 2R_19514289_SNP [dm6]	A	G	6.144e^-5	0.549	UPSTREAM Ir56d INTERGENIC
3R	4307793	3R_4307793_SNP [dm3] 3R_8482071_SNP [dm6]	T	C	6.203e^-5	0.549	INTERGENIC
3R	3301709	3R_3301709_SNP [dm3] 3R_7475987_SNP [dm6]	G	T	6.237e^-5	0.549	UPSTREAM snRNA:7SK & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15297212	2R_15297212_SNP [dm3] 2R_19409707_SNP [dm6]	A	G	6.349e^-5	0.549	SYNONYMOUS_CODING hts
2L	3395071	2L_3395071_SNP [dm3] 2L_3395071_SNP [dm6]	A	C	6.517e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12975912	2R_12975912_INS [dm3] 2R_17088407_INS [dm6]	A	ATCAAGT	6.523e^-5	0.549	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
2L	5861803	2L_5861803_SNP [dm3] 2L_5861803_SNP [dm6]	C	A	6.527e^-5	0.549	INTRON rau
2R	20106292	2R_20106292_SNP [dm3] 2R_24218769_SNP [dm6]	A	G	6.539e^-5	0.549	INTRON CG30419
2L	6807973	2L_6807973_SNP [dm3] 2L_6807973_SNP [dm6]	T	A	6.539e^-5	0.549	INTERGENIC
3L	14227628	3L_14227628_SNP [dm3] 3L_14234528_SNP [dm6]	C	T	6.547e^-5	0.549	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
2R	16961208	2R_16961208_SNP [dm3] 2R_21073703_SNP [dm6]	A	T	6.631e^-5	0.549	UPSTREAM CG10527 & 1 other INTERGENIC
3R	5916339	3R_5916339_SNP [dm3] 3R_10090617_SNP [dm6]	T	G	6.645e^-5	0.549	UPSTREAM mir-317 DOWNSTREAM CR45054 INTERGENIC
X	8402856	X_8402856_SNP [dm3] X_8508823_SNP [dm6]	A	G	6.668e^-5	0.549	UPSTREAM CG33181 INTRON CG33181
2L	16764266	2L_16764266_SNP [dm3] 2L_16764266_SNP [dm6]	T	A	6.690e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17851379	3R_17851379_DEL [dm3] 3R_22025657_DEL [dm6]	CGTCTAAAGTTATATTCTAT...	C	6.712e^-5	0.549	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12902812	2L_12902812_SNP [dm3] 2L_12902812_SNP [dm6]	A	T	6.721e^-5	0.549	INTERGENIC
2R	18066834	2R_18066834_SNP [dm3] 2R_22179329_SNP [dm6]	A	T	6.786e^-5	0.549	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10303658	3L_10303658_SNP [dm3] 3L_10310558_SNP [dm6]	C	T	6.957e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17598297	3L_17598297_SNP [dm3] 3L_17605197_SNP [dm6]	G	A	7.007e^-5	0.549	INTRON Eip74EF
3R	26693293	3R_26693293_SNP [dm3] 3R_30867571_SNP [dm6]	C	A	7.020e^-5	0.549	UTR_5_PRIME Cpr100A
2L	9271899	2L_9271899_SNP [dm3] 2L_9271899_SNP [dm6]	A	G	7.038e^-5	0.549	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
X	2390435	X_2390435_SNP [dm3] X_2496402_SNP [dm6]	T	G	7.079e^-5	0.549	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5938423	3R_5938423_DEL [dm3] 3R_10112701_DEL [dm6]	AA	A	7.083e^-5	0.549	UTR_5_PRIME CG3940	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21408693	3R_21408693_SNP [dm3] 3R_25582971_SNP [dm6]	C	A	7.083e^-5	0.549	START_GAINED CG4582 UTR_5_PRIME CG4582 INTRON msi	TF binding site mE1_TFBS_cad
2R	18101547	2R_18101547_SNP [dm3] 2R_22214042_SNP [dm6]	G	A	7.148e^-5	0.549	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12205559	3L_12205559_SNP [dm3] 3L_12212459_SNP [dm6]	A	G	7.158e^-5	0.549	SYNONYMOUS_CODING app DOWNSTREAM app INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15787267	2R_15787267_SNP [dm3] 2R_19899762_SNP [dm6]	G	T	7.223e^-5	0.549	INTERGENIC
2R	6590662	2R_6590662_SNP [dm3] 2R_10703157_SNP [dm6]	T	C	7.258e^-5	0.549	INTRON stan
2L	12912450	2L_12912450_SNP [dm3] 2L_12912450_SNP [dm6]	T	A	7.319e^-5	0.549	UPSTREAM ACXC INTERGENIC
2L	12912451	2L_12912451_SNP [dm3] 2L_12912451_SNP [dm6]	G	T	7.319e^-5	0.549	UPSTREAM ACXC INTERGENIC
2R	18599165	2R_18599165_SNP [dm3] 2R_22711660_SNP [dm6]	T	C	7.398e^-5	0.549	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3R	3261207	3R_3261207_SNP [dm3] 3R_7435485_SNP [dm6]	G	C	7.423e^-5	0.549	INTERGENIC
2L	17882202	2L_17882202_SNP [dm3] 2L_17882202_SNP [dm6]	T	C	7.493e^-5	0.549	INTERGENIC
3R	27573856	3R_27573856_SNP [dm3] 3R_31748134_SNP [dm6]	G	A	7.518e^-5	0.549	UPSTREAM CG1910 & 1 other INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	27573877	3R_27573877_SNP [dm3] 3R_31748155_SNP [dm6]	G	A	7.518e^-5	0.549	UPSTREAM CG1910 & 1 other INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	3302356	3R_3302356_SNP [dm3] 3R_7476634_SNP [dm6]	T	G	7.590e^-5	0.549	UPSTREAM tRNA:V3b:84Dd INTERGENIC
3R	3294945	3R_3294945_SNP [dm3] 3R_7469223_SNP [dm6]	C	A	7.598e^-5	0.549	UPSTREAM CR44934 INTERGENIC
2L	3757763	2L_3757763_SNP [dm3] 2L_3757763_SNP [dm6]	G	A	7.666e^-5	0.549	UTR_5_PRIME CG43707
2R	9366001	2R_9366001_SNP [dm3] 2R_13478496_SNP [dm6]	T	C	7.684e^-5	0.549	DOWNSTREAM CG43192 INTRON arr
2R	19500605	2R_19500605_SNP [dm3] 2R_23613082_SNP [dm6]	G	T	7.753e^-5	0.549	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
2L	7689202	2L_7689202_SNP [dm3] 2L_7689202_SNP [dm6]	C	T	7.782e^-5	0.549	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2L	12912448	2L_12912448_SNP [dm3] 2L_12912448_SNP [dm6]	C	A	7.793e^-5	0.549	UPSTREAM ACXC INTERGENIC
2L	2991289	2L_2991289_SNP [dm3] 2L_2991289_SNP [dm6]	A	G	7.805e^-5	0.549	INTRON okr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12901079	2L_12901079_DEL [dm3] 2L_12901079_DEL [dm6]	CGGT	C	7.881e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11687669	2L_11687669_SNP [dm3] 2L_11687669_SNP [dm6]	A	T	7.886e^-5	0.549	INTERGENIC
2L	14361546	2L_14361546_SNP [dm3] 2L_14361546_SNP [dm6]	A	C	7.892e^-5	0.549	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC
3L	5984678	3L_5984678_SNP [dm3] 3L_5991578_SNP [dm6]	A	T	7.920e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17851459	3R_17851459_SNP [dm3] 3R_22025737_SNP [dm6]	T	A	7.936e^-5	0.549	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1696387	3R_1696387_SNP [dm3] 3R_5870665_SNP [dm6]	A	T	7.939e^-5	0.549	INTRON CG34113
2R	1188379	2R_1188379_SNP [dm3] 2R_5300874_SNP [dm6]	A	G	7.993e^-5	0.549	INTERGENIC	transposable element FlyBase
2L	12904183	2L_12904183_SNP [dm3] 2L_12904183_SNP [dm6]	C	T	8.033e^-5	0.549	INTERGENIC
2L	12798114	2L_12798114_SNP [dm3] 2L_12798114_SNP [dm6]	C	A	8.045e^-5	0.549	INTERGENIC
3L	8626698	3L_8626698_SNP [dm3] 3L_8633598_SNP [dm6]	C	G	8.085e^-5	0.549	NON_SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1694752	3L_1694752_SNP [dm3] 3L_1694752_SNP [dm6]	G	A	8.101e^-5	0.549	SYNONYMOUS_CODING CG12011 INTRON CG7991
2L	17875105	2L_17875105_SNP [dm3] 2L_17875105_SNP [dm6]	T	G	8.152e^-5	0.549	INTRON CadN2
2R	16575871	2R_16575871_SNP [dm3] 2R_20688366_SNP [dm6]	C	A	8.161e^-5	0.549	INTERGENIC
2L	12798111	2L_12798111_SNP [dm3] 2L_12798111_SNP [dm6]	C	T	8.166e^-5	0.549	INTERGENIC
2L	16622621	2L_16622621_SNP [dm3] 2L_16622621_SNP [dm6]	C	T	8.171e^-5	0.549	SYNONYMOUS_CODING CG42389 INTRON CG42389	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21410221	3R_21410221_SNP [dm3] 3R_25584499_SNP [dm6]	A	G	8.176e^-5	0.549	UTR_5_PRIME msi INTRON msi
3R	27557238	3R_27557238_SNP [dm3] 3R_31731516_SNP [dm6]	C	T	8.182e^-5	0.549	UTR_3_PRIME ttk INTRON ttk
3L	10129815	3L_10129815_SNP [dm3] 3L_10136715_SNP [dm6]	C	T	8.184e^-5	0.549	INTRON dpr6
X	14743374	X_14743374_SNP [dm3] X_14849341_SNP [dm6]	T	A	8.216e^-5	0.549	UPSTREAM CG9522 INTRON Flo2
2R	12477432	2R_12477432_SNP [dm3] 2R_16589927_SNP [dm6]	G	A	8.239e^-5	0.549	SYNONYMOUS_CODING CG8306 UPSTREAM CG8311	TF binding site mE1_TFBS_bab1
2R	7324218	2R_7324218_SNP [dm3] 2R_11436713_SNP [dm6]	C	T	8.251e^-5	0.549	INTRON CG7777
3R	3306037	3R_3306037_SNP [dm3] 3R_7480315_SNP [dm6]	C	A	8.287e^-5	0.549	INTERGENIC
2L	16764262	2L_16764262_DEL [dm3] 2L_16764262_DEL [dm6]	AA	A	8.298e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27018795	3R_27018795_SNP [dm3] 3R_31193073_SNP [dm6]	T	C	8.337e^-5	0.549	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3284934	3R_3284934_SNP [dm3] 3R_7459212_SNP [dm6]	C	T	8.364e^-5	0.549	INTERGENIC
2L	2594137	2L_2594137_SNP [dm3] 2L_2594137_SNP [dm6]	C	G	8.402e^-5	0.549	INTERGENIC
3R	3309697	3R_3309697_SNP [dm3] 3R_7483975_SNP [dm6]	T	C	8.475e^-5	0.549	INTERGENIC
2L	16764312	2L_16764312_SNP [dm3] 2L_16764312_SNP [dm6]	A	G	8.500e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2257666	3R_2257666_SNP [dm3] 3R_6431944_SNP [dm6]	C	T	8.535e^-5	0.549	INTRON gpp
X	20848213	X_20848213_SNP [dm3] X_20977186_SNP [dm6]	T	C	8.708e^-5	0.549	INTERGENIC
2R	7324215	2R_7324215_SNP [dm3] 2R_11436710_SNP [dm6]	A	C	8.778e^-5	0.549	INTRON CG7777
2R	15479761	2R_15479761_SNP [dm3] 2R_19592256_SNP [dm6]	A	G	8.788e^-5	0.549	INTRON sm
3R	10511893	3R_10511893_SNP [dm3] 3R_14686171_SNP [dm6]	G	T	8.791e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2431371	3L_2431371_SNP [dm3] 3L_2431371_SNP [dm6]	A	G	8.805e^-5	0.549	INTRON CG45186
2L	12641173	2L_12641173_SNP [dm3] 2L_12641173_SNP [dm6]	T	G	8.835e^-5	0.549	UTR_5_PRIME Ref2
3L	8853520	3L_8853520_SNP [dm3] 3L_8860420_SNP [dm6]	A	G	8.840e^-5	0.549	INTRON dally
2L	9369828	2L_9369828_SNP [dm3] 2L_9369828_SNP [dm6]	G	C	8.842e^-5	0.549	DOWNSTREAM Shawl INTERGENIC
2L	19382394	2L_19382394_SNP [dm3] 2L_19382394_SNP [dm6]	G	A	8.873e^-5	0.549	DOWNSTREAM fon INTRON CG17350	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27556873	3R_27556873_SNP [dm3] 3R_31731151_SNP [dm6]	A	G	8.950e^-5	0.549	UTR_3_PRIME ttk INTRON ttk
3L	1288650	3L_1288650_SNP [dm3] 3L_1288650_SNP [dm6]	G	A	8.993e^-5	0.549	DOWNSTREAM CG32333 INTRON CG32333	TF binding site mE1_TFBS_chinmo
3L	1529993	3L_1529993_SNP [dm3] 3L_1529993_SNP [dm6]	G	A	9.001e^-5	0.549	NON_SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad
2L	12912456	2L_12912456_SNP [dm3] 2L_12912456_SNP [dm6]	T	A	9.046e^-5	0.549	UPSTREAM ACXC INTERGENIC
2R	11878463	2R_11878463_SNP [dm3] 2R_15990958_SNP [dm6]	G	A	9.072e^-5	0.549	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4104536	2L_4104536_SNP [dm3] 2L_4104536_SNP [dm6]	T	C	9.076e^-5	0.549	INTRON ed
2L	17883745	2L_17883745_SNP [dm3] 2L_17883745_SNP [dm6]	A	G	9.095e^-5	0.549	INTERGENIC
3L	14836099	3L_14836099_SNP [dm3] 3L_14842999_SNP [dm6]	C	T	9.096e^-5	0.549	INTRON CG17839
3R	10511166	3R_10511166_SNP [dm3] 3R_14685444_SNP [dm6]	G	A	9.119e^-5	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3265270	3R_3265270_SNP [dm3] 3R_7439548_SNP [dm6]	C	A	9.120e^-5	0.549	UPSTREAM CG14598 INTERGENIC
2L	18586697	2L_18586697_SNP [dm3] 2L_18586697_SNP [dm6]	A	T	9.146e^-5	0.549	INTRON Pde11
3R	10415167	3R_10415167_SNP [dm3] 3R_14589445_SNP [dm6]	A	G	9.155e^-5	0.549	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16015164	2R_16015164_SNP [dm3] 2R_20127659_SNP [dm6]	T	C	9.165e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12800064	2L_12800064_SNP [dm3] 2L_12800064_SNP [dm6]	A	G	9.271e^-5	0.549	INTERGENIC
3R	27574068	3R_27574068_SNP [dm3] 3R_31748346_SNP [dm6]	C	T	9.290e^-5	0.549	UPSTREAM CG1910 & 1 other INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	18523004	2R_18523004_SNP [dm3] 2R_22635499_SNP [dm6]	G	A	9.348e^-5	0.549	SYNONYMOUS_CODING CG17807 DOWNSTREAM Cdk9	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2R	15065876	2R_15065876_SNP [dm3] 2R_19178371_SNP [dm6]	A	T	9.368e^-5	0.549	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26683803	3R_26683803_SNP [dm3] 3R_30858081_SNP [dm6]	C	G	9.371e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_sens
2R	4423098	2R_4423098_SNP [dm3] 2R_8535593_SNP [dm6]	C	T	9.374e^-5	0.549	INTERGENIC
3L	18091987	3L_18091987_SNP [dm3] 3L_18098887_SNP [dm6]	A	C	9.390e^-5	0.549	INTRON CG13698
2R	7526839	2R_7526839_SNP [dm3] 2R_11639334_SNP [dm6]	T	A	9.406e^-5	0.549	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18297996	2L_18297996_SNP [dm3] 2L_18297996_SNP [dm6]	A	C	9.428e^-5	0.549	DOWNSTREAM CG5790 INTERGENIC
2L	12757847	2L_12757847_SNP [dm3] 2L_12757847_SNP [dm6]	C	A	9.445e^-5	0.549	INTERGENIC
3R	3289904	3R_3289904_SNP [dm3] 3R_7464182_SNP [dm6]	G	C	9.448e^-5	0.549	INTERGENIC
X	8813682	X_8813682_SNP [dm3] X_8919649_SNP [dm6]	C	T	9.522e^-5	0.549	INTRON rdgA EXON CR44111
3L	5982990	3L_5982990_SNP [dm3] 3L_5989890_SNP [dm6]	C	T	9.537e^-5	0.549	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24205532	3R_24205532_SNP [dm3] 3R_28379810_SNP [dm6]	T	G	9.573e^-5	0.549	INTERGENIC
2R	4356621	2R_4356621_SNP [dm3] 2R_8469116_SNP [dm6]	C	A	9.576e^-5	0.549	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
3L	8853525	3L_8853525_SNP [dm3] 3L_8860425_SNP [dm6]	T	G	9.614e^-5	0.549	INTRON dally
3R	23185263	3R_23185263_INS [dm3] 3R_27359541_INS [dm6]	T	TCT	9.619e^-5	0.549	INTRON CG42534
3L	6374293	3L_6374293_SNP [dm3] 3L_6381193_SNP [dm6]	T	A	9.620e^-5	0.549	INTERGENIC
2L	8339311	2L_8339311_SNP [dm3] 2L_8339311_SNP [dm6]	G	A	9.649e^-5	0.549	INTRON CG14274
3R	26634648	3R_26634648_SNP [dm3] 3R_30808926_SNP [dm6]	G	T	9.658e^-5	0.549	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	2560500	2L_2560500_SNP [dm3] 2L_2560500_SNP [dm6]	A	C	9.667e^-5	0.549	INTERGENIC
2R	4425838	2R_4425838_SNP [dm3] 2R_8538333_SNP [dm6]	G	C	9.707e^-5	0.549	INTERGENIC
X	10869001	X_10869001_SNP [dm3] X_10974968_SNP [dm6]	C	T	9.721e^-5	0.549	INTRON CG42339
X	5444130	X_5444130_SNP [dm3] X_5550097_SNP [dm6]	T	C	9.757e^-5	0.549	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	7334344	3L_7334344_SNP [dm3] 3L_7341244_SNP [dm6]	C	T	9.820e^-5	0.549	DOWNSTREAM CG8596 INTRON lark	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3657322	2L_3657322_SNP [dm3] 2L_3657322_SNP [dm6]	G	T	9.853e^-5	0.549	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
2L	18195451	2L_18195451_SNP [dm3] 2L_18195451_SNP [dm6]	T	C	9.856e^-5	0.549	INTRON CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5970515	3R_5970515_SNP [dm3] 3R_10144793_SNP [dm6]	G	A	9.906e^-5	0.549	UTR_5_PRIME Invadolysin UPSTREAM TAF1B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12912461	2L_12912461_INS [dm3] 2L_12912461_INS [dm6]	A	AAATGTAA	9.958e^-5	0.549	UPSTREAM ACXC INTERGENIC
3R	3269658	3R_3269658_SNP [dm3] 3R_7443936_SNP [dm6]	T	A	1.005e^-4	0.549	INTERGENIC
2R	7519929	2R_7519929_SNP [dm3] 2R_11632424_SNP [dm6]	A	C	1.008e^-4	0.549	UTR_5_PRIME CG9005 INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	25358633	3R_25358633_SNP [dm3] 3R_29532911_SNP [dm6]	T	A	1.009e^-4	0.549	INTERGENIC
2L	4275129	2L_4275129_SNP [dm3] 2L_4275129_SNP [dm6]	T	C	1.011e^-4	0.549	INTERGENIC
3L	5923193	3L_5923193_SNP [dm3] 3L_5930093_SNP [dm6]	A	G	1.013e^-4	0.549	UTR_3_PRIME Vap-33B DOWNSTREAM Rcc1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17882455	2L_17882455_SNP [dm3] 2L_17882455_SNP [dm6]	T	C	1.014e^-4	0.549	INTERGENIC
2L	10658910	2L_10658910_SNP [dm3] 2L_10658910_SNP [dm6]	T	C	1.015e^-4	0.549	DOWNSTREAM CR45692 & 1 other INTERGENIC
2L	18183200	2L_18183200_SNP [dm3] 2L_18183200_SNP [dm6]	G	A	1.016e^-4	0.549	SYNONYMOUS_CODING CG7180 INTRON CG42750
3R	3301380	3R_3301380_SNP [dm3] 3R_7475658_SNP [dm6]	C	T	1.017e^-4	0.549	UPSTREAM snRNA:7SK DOWNSTREAM tRNA:V3b:84Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
X	3250165	X_3250165_SNP [dm3] X_3356132_SNP [dm6]	C	T	1.018e^-4	0.549	INTERGENIC
2L	15338426	2L_15338426_SNP [dm3] 2L_15338426_SNP [dm6]	A	T	1.021e^-4	0.549	INTERGENIC
3L	12965609	3L_12965609_SNP [dm3] 3L_12972509_SNP [dm6]	A	T	1.022e^-4	0.549	UTR_5_PRIME CG10749 UPSTREAM CG10748
3L	2573617	3L_2573617_SNP [dm3] 3L_2573617_SNP [dm6]	C	A	1.023e^-4	0.549	INTRON msn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1962690	2L_1962690_SNP [dm3] 2L_1962690_SNP [dm6]	A	G	1.036e^-4	0.549	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6026734	3L_6026734_SNP [dm3] 3L_6033634_SNP [dm6]	C	T	1.038e^-4	0.549	UTR_3_PRIME CG10477
3L	18559238	3L_18559238_SNP [dm3] 3L_18566138_SNP [dm6]	T	G	1.038e^-4	0.549	INTRON AstC-R1
3R	810116	3R_810116_SNP [dm3] 3R_4984394_SNP [dm6]	G	A	1.041e^-4	0.549	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6158189	2L_6158189_SNP [dm3] 2L_6158189_SNP [dm6]	A	T	1.041e^-4	0.549	INTERGENIC
2R	9365993	2R_9365993_INS [dm3] 2R_13478488_INS [dm6]	C	CTTTAA	1.042e^-4	0.549	DOWNSTREAM CG43192 INTRON arr
3R	3297858	3R_3297858_SNP [dm3] 3R_7472136_SNP [dm6]	A	G	1.043e^-4	0.549	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
X	1628933	X_1628933_SNP [dm3] X_1734900_SNP [dm6]	A	T	1.043e^-4	0.549	INTERGENIC
2R	12937083	2R_12937083_SNP [dm3] 2R_17049578_SNP [dm6]	T	G	1.048e^-4	0.549	DOWNSTREAM CG9642 INTRON CG9646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11687652	2L_11687652_INS [dm3] 2L_11687652_INS [dm6]	G	GG	1.048e^-4	0.549	INTERGENIC
2L	12904181	2L_12904181_INS [dm3] 2L_12904181_INS [dm6]	T	TGTGCCTAGAAGC...	1.050e^-4	0.549	INTERGENIC
3R	17851357	3R_17851357_SNP [dm3] 3R_22025635_SNP [dm6]	G	T	1.051e^-4	0.549	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19824086	2R_19824086_SNP [dm3] 2R_23936563_SNP [dm6]	T	C	1.051e^-4	0.549	UPSTREAM Ca-P60A DOWNSTREAM CG3735 INTERGENIC
3R	10351390	3R_10351390_SNP [dm3] 3R_14525668_SNP [dm6]	C	A	1.051e^-4	0.549	INTRON Pde6
2L	12904165	2L_12904165_SNP [dm3] 2L_12904165_SNP [dm6]	C	G	1.053e^-4	0.549	INTERGENIC
2R	11883639	2R_11883639_DEL [dm3] 2R_15996134_DEL [dm6]	GC	G	1.055e^-4	0.549	INTRON ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12804984	2L_12804984_SNP [dm3] 2L_12804984_SNP [dm6]	A	G	1.060e^-4	0.549	INTERGENIC
3R	10491969	3R_10491969_SNP [dm3] 3R_14666247_SNP [dm6]	C	A	1.064e^-4	0.549	NON_SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_chinmo
2L	9369408	2L_9369408_SNP [dm3] 2L_9369408_SNP [dm6]	A	G	1.068e^-4	0.549	DOWNSTREAM CG34181 & 1 other INTERGENIC
3L	6026747	3L_6026747_SNP [dm3] 3L_6033647_SNP [dm6]	G	A	1.069e^-4	0.549	UTR_3_PRIME CG10477
3L	7906973	3L_7906973_SNP [dm3] 3L_7913873_SNP [dm6]	A	T	1.070e^-4	0.549	SYNONYMOUS_CODING CG8111 DOWNSTREAM CG8281	TF binding site mE1_TFBS_chinmo
3R	10510196	3R_10510196_SNP [dm3] 3R_14684474_SNP [dm6]	G	A	1.071e^-4	0.549	INTRON Meltrin
X	12719435	X_12719435_SNP [dm3] X_12825402_SNP [dm6]	C	A	1.071e^-4	0.549	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16621339	2L_16621339_SNP [dm3] 2L_16621339_SNP [dm6]	T	A	1.092e^-4	0.549	INTRON CG42389
3L	5373869	3L_5373869_SNP [dm3] 3L_5380769_SNP [dm6]	C	T	1.095e^-4	0.549	INTRON Ir64a	TF binding site mE1_TFBS_sens
3L	8854613	3L_8854613_SNP [dm3] 3L_8861513_SNP [dm6]	A	G	1.096e^-4	0.549	INTRON dally
2L	10077873	2L_10077873_SNP [dm3] 2L_10077873_SNP [dm6]	G	T	1.098e^-4	0.549	INTRON CG44153
3R	10506487	3R_10506487_SNP [dm3] 3R_14680765_SNP [dm6]	C	A	1.099e^-4	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	21907866	X_21907866_SNP [dm3] X_22506030_SNP [dm6]	A	C	1.099e^-4	0.549	SYNONYMOUS_CODING l_1_G0196
X	8566292	X_8566292_SNP [dm3] X_8672259_SNP [dm6]	C	T	1.101e^-4	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10516964	3R_10516964_SNP [dm3] 3R_14691242_SNP [dm6]	T	A	1.108e^-4	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
X	15653110	X_15653110_SNP [dm3] X_15759077_SNP [dm6]	A	G	1.109e^-4	0.549	INTRON Graf	TF binding site BDTNP1_TFBS_twi
3R	10507954	3R_10507954_SNP [dm3] 3R_14682232_SNP [dm6]	T	A	1.113e^-4	0.549	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18595547	2R_18595547_SNP [dm3] 2R_22708042_SNP [dm6]	T	C	1.115e^-4	0.549	SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
2L	6595172	2L_6595172_SNP [dm3] 2L_6595172_SNP [dm6]	C	G	1.116e^-4	0.549	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18179896	2L_18179896_SNP [dm3] 2L_18179896_SNP [dm6]	A	C	1.117e^-4	0.549	DOWNSTREAM CG7180 INTRON CG42750
3L	8853983	3L_8853983_SNP [dm3] 3L_8860883_SNP [dm6]	A	G	1.119e^-4	0.549	INTRON dally
X	20631013	X_20631013_INS [dm3] X_20759986_INS [dm6]	A	AGA	1.124e^-4	0.549	DOWNSTREAM CR44710 EXON CR43838	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	698807	3R_698807_SNP [dm3] 3R_4873085_SNP [dm6]	G	A	1.124e^-4	0.549	INTERGENIC	regulatory region REDfly_CRMs
3L	2228748	3L_2228748_SNP [dm3] 3L_2228748_SNP [dm6]	T	A	1.127e^-4	0.549	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	16546720	3L_16546720_SNP [dm3] 3L_16553620_SNP [dm6]	T	C	1.137e^-4	0.549	INTERGENIC
3R	9750700	3R_9750700_DEL [dm3] 3R_13924978_DEL [dm6]	TAA	T	1.137e^-4	0.549	INTERGENIC
3R	26693292	3R_26693292_SNP [dm3] 3R_30867570_SNP [dm6]	T	A	1.138e^-4	0.549	UTR_5_PRIME Cpr100A
2R	12035665	2R_12035665_SNP [dm3] 2R_16148160_SNP [dm6]	T	C	1.141e^-4	0.549	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
2L	1732756	2L_1732756_SNP [dm3] 2L_1732756_SNP [dm6]	A	G	1.142e^-4	0.549	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
X	3628636	X_3628636_SNP [dm3] X_3734603_SNP [dm6]	C	G	1.148e^-4	0.549	INTRON tlk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18534113	2R_18534113_SNP [dm3] 2R_22646608_SNP [dm6]	T	C	1.152e^-4	0.549	UPSTREAM CG2852 DOWNSTREAM CG30195 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10302213	3L_10302213_SNP [dm3] 3L_10309113_SNP [dm6]	G	T	1.152e^-4	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5984557	3L_5984557_SNP [dm3] 3L_5991457_SNP [dm6]	C	A	1.155e^-4	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3803143	2L_3803143_SNP [dm3] 2L_3803143_SNP [dm6]	A	G	1.159e^-4	0.549	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12914316	2L_12914316_SNP [dm3] 2L_12914316_SNP [dm6]	T	C	1.162e^-4	0.549	SYNONYMOUS_CODING ACXC UTR_3_PRIME ACXC
2L	16621539	2L_16621539_SNP [dm3] 2L_16621539_SNP [dm6]	T	A	1.162e^-4	0.549	INTRON CG42389	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	1.172e^-4	0.549	UPSTREAM TrpA1 INTRON TrpA1
3L	5981494	3L_5981494_INS [dm3] 3L_5988394_INS [dm6]	C	CC	1.174e^-4	0.549	INTERGENIC	TF binding site mE1_TFBS_sens
2L	18143956	2L_18143956_SNP [dm3] 2L_18143956_SNP [dm6]	A	G	1.174e^-4	0.549	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E
2L	11744242	2L_11744242_SNP [dm3] 2L_11744242_SNP [dm6]	T	C	1.175e^-4	0.549	UTR_3_PRIME Vha100-5 EXON CR44144
3R	4221461	3R_4221461_SNP [dm3] 3R_8395739_SNP [dm6]	A	G	1.177e^-4	0.549	INTRON CG45263
3L	1694363	3L_1694363_SNP [dm3] 3L_1694363_SNP [dm6]	C	T	1.178e^-4	0.549	UPSTREAM CG12011 INTRON CG7991
X	8402954	X_8402954_SNP [dm3] X_8508921_SNP [dm6]	A	C	1.182e^-4	0.549	UPSTREAM CG33181 INTRON CG33181
X	5186007	X_5186007_SNP [dm3] X_5291974_SNP [dm6]	T	C	1.183e^-4	0.549	INTERGENIC
2R	4480528	2R_4480528_SNP [dm3] 2R_8593023_SNP [dm6]	T	C	1.185e^-4	0.549	DOWNSTREAM CG43183 INTERGENIC
3R	1813691	3R_1813691_SNP [dm3] 3R_5987969_SNP [dm6]	C	G	1.194e^-4	0.549	INTERGENIC
3R	24209742	3R_24209742_SNP [dm3] 3R_28384020_SNP [dm6]	A	T	1.197e^-4	0.549	INTERGENIC
3R	3261085	3R_3261085_SNP [dm3] 3R_7435363_SNP [dm6]	G	A	1.197e^-4	0.549	INTERGENIC
3L	1694849	3L_1694849_SNP [dm3] 3L_1694849_SNP [dm6]	G	A	1.197e^-4	0.549	NON_SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	17851438	3R_17851438_SNP [dm3] 3R_22025716_SNP [dm6]	G	C	1.204e^-4	0.549	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4036126	2L_4036126_SNP [dm3] 2L_4036126_SNP [dm6]	T	C	1.204e^-4	0.549	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	5879744	2L_5879744_SNP [dm3] 2L_5879744_SNP [dm6]	C	A	1.205e^-4	0.549	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9623798	2R_9623798_SNP [dm3] 2R_13736293_SNP [dm6]	C	G	1.206e^-4	0.549	INTRON fas
2L	16954690	2L_16954690_SNP [dm3] 2L_16954690_SNP [dm6]	T	C	1.209e^-4	0.549	INTERGENIC
X	5444136	X_5444136_SNP [dm3] X_5550103_SNP [dm6]	G	A	1.209e^-4	0.549	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	11875521	2R_11875521_SNP [dm3] 2R_15988016_SNP [dm6]	A	G	1.214e^-4	0.549	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2L	1530196	2L_1530196_SNP [dm3] 2L_1530196_SNP [dm6]	A	T	1.215e^-4	0.549	INTERGENIC
3L	8850809	3L_8850809_SNP [dm3] 3L_8857709_SNP [dm6]	G	T	1.218e^-4	0.549	INTRON dally
3R	9038538	3R_9038538_DEL [dm3] 3R_13212816_DEL [dm6]	GG	G	1.220e^-4	0.549	INTRON CG8483
3R	24162681	3R_24162681_SNP [dm3] 3R_28336959_SNP [dm6]	C	T	1.224e^-4	0.549	UPSTREAM larp DOWNSTREAM Gfat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13964137	3L_13964137_SNP [dm3] 3L_13971037_SNP [dm6]	G	A	1.228e^-4	0.549	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3L	5987146	3L_5987146_SNP [dm3] 3L_5994046_SNP [dm6]	A	C	1.229e^-4	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16961070	2R_16961070_SNP [dm3] 2R_21073565_SNP [dm6]	A	G	1.236e^-4	0.549	UPSTREAM CG10527 & 1 other INTERGENIC
2R	18282835	2R_18282835_SNP [dm3] 2R_22395330_SNP [dm6]	A	T	1.238e^-4	0.549	INTRON babos
2L	3657928	2L_3657928_SNP [dm3] 2L_3657928_SNP [dm6]	A	T	1.239e^-4	0.549	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	3161520	3R_3161520_SNP [dm3] 3R_7335798_SNP [dm6]	C	T	1.239e^-4	0.549	INTERGENIC
3R	3307666	3R_3307666_SNP [dm3] 3R_7481944_SNP [dm6]	A	C	1.240e^-4	0.549	INTERGENIC
2L	7574706	2L_7574706_SNP [dm3] 2L_7574706_SNP [dm6]	G	A	1.243e^-4	0.549	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4276696	3R_4276696_SNP [dm3] 3R_8450974_SNP [dm6]	C	G	1.250e^-4	0.55	INTRON CG45263
2R	16694093	2R_16694093_SNP [dm3] 2R_20806588_SNP [dm6]	G	A	1.258e^-4	0.552	INTERGENIC
3R	8873120	3R_8873120_SNP [dm3] 3R_13047398_SNP [dm6]	C	T	1.264e^-4	0.552	UPSTREAM CG31157 DOWNSTREAM Hsc70-2 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12912580	2L_12912580_SNP [dm3] 2L_12912580_SNP [dm6]	T	G	1.268e^-4	0.552	UTR_5_PRIME ACXC
2R	18590251	2R_18590251_SNP [dm3] 2R_22702746_SNP [dm6]	T	C	1.271e^-4	0.552	SYNONYMOUS_CODING Obp59a INTRON CG30259
3R	3262061	3R_3262061_SNP [dm3] 3R_7436339_SNP [dm6]	T	A	1.274e^-4	0.552	INTERGENIC
X	10868959	X_10868959_SNP [dm3] X_10974926_SNP [dm6]	C	A	1.276e^-4	0.552	INTRON CG42339
3R	26381517	3R_26381517_SNP [dm3] 3R_30555795_SNP [dm6]	G	T	1.278e^-4	0.552	UTR_3_PRIME CG34155 INTRON tmod
2R	2115050	2R_2115050_SNP [dm3] 2R_6227545_SNP [dm6]	G	A	1.278e^-4	0.552	DOWNSTREAM tomboy40 INTRON bin3
3L	14834405	3L_14834405_SNP [dm3] 3L_14841305_SNP [dm6]	A	G	1.283e^-4	0.553	INTRON CG17839
2L	12912442	2L_12912442_SNP [dm3] 2L_12912442_SNP [dm6]	T	A	1.291e^-4	0.555	UPSTREAM ACXC INTERGENIC
3R	3283464	3R_3283464_SNP [dm3] 3R_7457742_SNP [dm6]	C	T	1.294e^-4	0.555	INTERGENIC
2L	16621147	2L_16621147_SNP [dm3] 2L_16621147_SNP [dm6]	G	A	1.300e^-4	0.556	INTRON CG42389
2R	11883624	2R_11883624_SNP [dm3] 2R_15996119_SNP [dm6]	G	A	1.303e^-4	0.556	INTRON ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11879539	2R_11879539_SNP [dm3] 2R_15992034_SNP [dm6]	A	G	1.306e^-4	0.556	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	8507634	3R_8507634_SNP [dm3] 3R_12681912_SNP [dm6]	G	T	1.306e^-4	0.556	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
2R	12035797	2R_12035797_SNP [dm3] 2R_16148292_SNP [dm6]	C	T	1.313e^-4	0.556	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
X	20631006	X_20631006_SNP [dm3] X_20759979_SNP [dm6]	A	G	1.314e^-4	0.556	DOWNSTREAM CR44710 EXON CR43838	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	26647211	3R_26647211_SNP [dm3] 3R_30821489_SNP [dm6]	A	C	1.321e^-4	0.556	UPSTREAM cindr INTRON cindr	TF binding site BDTNP1_TFBS_z
3R	3289180	3R_3289180_SNP [dm3] 3R_7463458_SNP [dm6]	T	C	1.332e^-4	0.556	INTERGENIC
2L	12903454	2L_12903454_SNP [dm3] 2L_12903454_SNP [dm6]	G	A	1.332e^-4	0.556	INTERGENIC
2L	6788118	2L_6788118_SNP [dm3] 2L_6788118_SNP [dm6]	T	A	1.335e^-4	0.556	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11874763	2R_11874763_SNP [dm3] 2R_15987258_SNP [dm6]	G	A	1.338e^-4	0.556	UTR_5_PRIME Strn-Mlck UPSTREAM CR45021 INTRON Strn-Mlck
3R	10511667	3R_10511667_SNP [dm3] 3R_14685945_SNP [dm6]	C	T	1.340e^-4	0.556	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27555161	3R_27555161_SNP [dm3] 3R_31729439_SNP [dm6]	A	T	1.343e^-4	0.556	INTRON ttk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12975923	2R_12975923_DEL [dm3] 2R_17088418_DEL [dm6]	CAAATG	C	1.344e^-4	0.556	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
X	4568068	X_4568068_SNP [dm3] X_4674035_SNP [dm6]	T	G	1.348e^-4	0.556	INTRON rap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14973151	3L_14973151_SNP [dm3] 3L_14980051_SNP [dm6]	G	C	1.352e^-4	0.556	INTRON CG3349	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sbb
3R	2666690	3R_2666690_SNP [dm3] 3R_6840968_SNP [dm6]	G	A	1.355e^-4	0.556	INTRON Scr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	5986136	3L_5986136_SNP [dm3] 3L_5993036_SNP [dm6]	A	G	1.359e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	708538	3R_708538_SNP [dm3] 3R_4882816_SNP [dm6]	A	G	1.360e^-4	0.556	INTERGENIC
3R	27027002	3R_27027002_SNP [dm3] 3R_31201280_SNP [dm6]	C	T	1.360e^-4	0.556	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_cad
3R	25222678	3R_25222678_SNP [dm3] 3R_29396956_SNP [dm6]	A	G	1.364e^-4	0.556	INTRON Ptp99A
2R	4311316	2R_4311316_SNP [dm3] 2R_8423811_SNP [dm6]	C	A	1.365e^-4	0.556	INTRON CSN7
3L	10303670	3L_10303670_SNP [dm3] 3L_10310570_SNP [dm6]	C	G	1.366e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14198012	2R_14198012_SNP [dm3] 2R_18310507_SNP [dm6]	G	A	1.368e^-4	0.556	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11875506	2R_11875506_SNP [dm3] 2R_15988001_SNP [dm6]	T	A	1.373e^-4	0.556	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3L	14834488	3L_14834488_SNP [dm3] 3L_14841388_SNP [dm6]	C	T	1.373e^-4	0.556	INTRON CG17839
2L	3764415	2L_3764415_SNP [dm3] 2L_3764415_SNP [dm6]	T	C	1.375e^-4	0.556	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8111885	X_8111885_SNP [dm3] X_8217852_SNP [dm6]	G	C	1.382e^-4	0.556	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	18137348	2L_18137348_SNP [dm3] 2L_18137348_SNP [dm6]	T	C	1.383e^-4	0.556	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12202380	3L_12202380_SNP [dm3] 3L_12209280_SNP [dm6]	T	C	1.384e^-4	0.556	UTR_3_PRIME app INTRON app
3R	3289014	3R_3289014_SNP [dm3] 3R_7463292_SNP [dm6]	G	A	1.398e^-4	0.559	INTERGENIC
2L	9272816	2L_9272816_SNP [dm3] 2L_9272816_SNP [dm6]	A	G	1.399e^-4	0.559	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
X	20853174	X_20853174_SNP [dm3] X_20982147_SNP [dm6]	A	T	1.401e^-4	0.559	INTERGENIC
3L	9212134	3L_9212134_SNP [dm3] 3L_9219034_SNP [dm6]	A	G	1.415e^-4	0.564	INTERGENIC
3R	27819605	3R_27819605_SNP [dm3] 3R_31993883_SNP [dm6]	A	C	1.420e^-4	0.564	UPSTREAM heph INTRON heph
3R	17203647	3R_17203647_SNP [dm3] 3R_21377925_SNP [dm6]	C	A	1.428e^-4	0.565	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23316951	3R_23316951_SNP [dm3] 3R_27491229_SNP [dm6]	C	T	1.429e^-4	0.565	INTERGENIC
3R	9480138	3R_9480138_SNP [dm3] 3R_13654416_SNP [dm6]	C	T	1.430e^-4	0.565	UTR_3_PRIME rin DOWNSTREAM Rbp4
2L	17842867	2L_17842867_SNP [dm3] 2L_17842867_SNP [dm6]	A	G	1.442e^-4	0.568	INTRON CadN2
2R	1745389	2R_1745389_SNP [dm3] 2R_5857884_SNP [dm6]	A	T	1.448e^-4	0.568	INTRON dpr12
2L	2996463	2L_2996463_SNP [dm3] 2L_2996463_SNP [dm6]	C	T	1.454e^-4	0.568	INTRON CG3558
2L	11672835	2L_11672835_SNP [dm3] 2L_11672835_SNP [dm6]	C	T	1.456e^-4	0.568	INTERGENIC
3R	3316952	3R_3316952_SNP [dm3] 3R_7491230_SNP [dm6]	A	G	1.457e^-4	0.568	INTRON alpha-Est10	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	686710	3R_686710_SNP [dm3] 3R_4860988_SNP [dm6]	A	G	1.457e^-4	0.568	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3599253	3R_3599253_SNP [dm3] 3R_7773531_SNP [dm6]	C	G	1.466e^-4	0.569	INTERGENIC
2L	8339281	2L_8339281_SNP [dm3] 2L_8339281_SNP [dm6]	G	T	1.472e^-4	0.569	INTRON CG14274
2R	9612868	2R_9612868_SNP [dm3] 2R_13725363_SNP [dm6]	T	C	1.473e^-4	0.569	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11973358	2L_11973358_SNP [dm3] 2L_11973358_SNP [dm6]	G	T	1.475e^-4	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17853934	2L_17853934_SNP [dm3] 2L_17853934_SNP [dm6]	A	G	1.477e^-4	0.569	INTRON CadN2
3L	6017601	3L_6017601_SNP [dm3] 3L_6024501_SNP [dm6]	G	T	1.483e^-4	0.569	INTRON PVRAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11881115	2R_11881115_SNP [dm3] 2R_15993610_SNP [dm6]	C	A	1.486e^-4	0.569	UTR_3_PRIME CG8320 & 1 other DOWNSTREAM ATPCL
2R	13378746	2R_13378746_SNP [dm3] 2R_17491241_SNP [dm6]	A	T	1.487e^-4	0.569	NON_SYNONYMOUS_CODING NT5E-2
2L	12903994	2L_12903994_SNP [dm3] 2L_12903994_SNP [dm6]	G	C	1.487e^-4	0.569	INTERGENIC
3L	16880499	3L_16880499_SNP [dm3] 3L_16887399_SNP [dm6]	T	G	1.493e^-4	0.57	INTRON Lmpt
2L	4284550	2L_4284550_SNP [dm3] 2L_4284550_SNP [dm6]	G	C	1.502e^-4	0.572	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20115145	2L_20115145_SNP [dm3] 2L_20115145_SNP [dm6]	G	C	1.505e^-4	0.572	INTERGENIC
3R	17164881	3R_17164881_SNP [dm3] 3R_21339159_SNP [dm6]	A	G	1.510e^-4	0.572	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	686706	3R_686706_SNP [dm3] 3R_4860984_SNP [dm6]	C	A	1.510e^-4	0.572	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9322303	3L_9322303_SNP [dm3] 3L_9329203_SNP [dm6]	A	G	1.513e^-4	0.572	INTERGENIC
3R	10518046	3R_10518046_SNP [dm3] 3R_14692324_SNP [dm6]	A	T	1.526e^-4	0.575	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2L	12912455	2L_12912455_SNP [dm3] 2L_12912455_SNP [dm6]	T	A	1.532e^-4	0.575	UPSTREAM ACXC INTERGENIC
2L	10541950	2L_10541950_SNP [dm3] 2L_10541950_SNP [dm6]	C	T	1.533e^-4	0.575	DOWNSTREAM CR44618 INTERGENIC
2L	3760681	2L_3760681_SNP [dm3] 2L_3760681_SNP [dm6]	G	C	1.534e^-4	0.575	INTRON CG43707	TF binding site mE1_TFBS_chinmo
3L	884771	3L_884771_SNP [dm3] 3L_884771_SNP [dm6]	A	G	1.546e^-4	0.575	INTRON CG32479
3R	3301949	3R_3301949_SNP [dm3] 3R_7476227_SNP [dm6]	A	T	1.547e^-4	0.575	UPSTREAM tRNA:V3b:84Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5940953	3R_5940953_SNP [dm3] 3R_10115231_SNP [dm6]	C	A	1.548e^-4	0.575	INTRON CG3940
3L	8866730	3L_8866730_SNP [dm3] 3L_8873630_SNP [dm6]	G	A	1.549e^-4	0.575	INTRON dally
X	15087909	X_15087909_SNP [dm3] X_15193876_SNP [dm6]	T	C	1.553e^-4	0.575	INTERGENIC
3R	27541570	3R_27541570_SNP [dm3] 3R_31715848_SNP [dm6]	A	C	1.554e^-4	0.575	INTRON ttk	TF binding site mE1_TFBS_Trl
X	5973930	X_5973930_SNP [dm3] X_6079897_SNP [dm6]	T	G	1.554e^-4	0.575	INTRON CG4660
3R	27492812	3R_27492812_SNP [dm3] 3R_31667090_SNP [dm6]	C	T	1.568e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3289268	3R_3289268_SNP [dm3] 3R_7463546_SNP [dm6]	A	G	1.574e^-4	0.576	INTERGENIC
X	3628676	X_3628676_SNP [dm3] X_3734643_SNP [dm6]	T	A	1.575e^-4	0.576	INTRON tlk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15066230	2R_15066230_SNP [dm3] 2R_19178725_SNP [dm6]	T	C	1.585e^-4	0.576	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18330139	X_18330139_SNP [dm3] X_18436106_SNP [dm6]	A	G	1.602e^-4	0.576	SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
3L	5074013	3L_5074013_SNP [dm3] 3L_5074013_SNP [dm6]	C	G	1.603e^-4	0.576	INTRON Con
2L	681986	2L_681986_SNP [dm3] 2L_681986_SNP [dm6]	G	A	1.606e^-4	0.576	INTRON ds
2L	16618071	2L_16618071_SNP [dm3] 2L_16618071_SNP [dm6]	T	G	1.608e^-4	0.576	INTRON CG42389
X	3055663	X_3055663_SNP [dm3] X_3161630_SNP [dm6]	T	A	1.618e^-4	0.576	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3055785	X_3055785_DEL [dm3] X_3161752_DEL [dm6]	CATCC	C	1.618e^-4	0.576	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10938918	3R_10938918_SNP [dm3] 3R_15113196_SNP [dm6]	G	C	1.625e^-4	0.576	INTRON CG42788
3R	27564689	3R_27564689_SNP [dm3] 3R_31738967_SNP [dm6]	A	G	1.630e^-4	0.576	UPSTREAM Ef1alpha100E DOWNSTREAM CG11563 INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2190700	X_2190700_SNP [dm3] X_2296667_SNP [dm6]	C	T	1.632e^-4	0.576	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17901416	2R_17901416_SNP [dm3] 2R_22013911_SNP [dm6]	A	T	1.639e^-4	0.576	INTRON CG34370
3L	8621180	3L_8621180_SNP [dm3] 3L_8628080_SNP [dm6]	G	A	1.642e^-4	0.576	INTRON Zasp66	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12035674	2R_12035674_SNP [dm3] 2R_16148169_SNP [dm6]	G	C	1.648e^-4	0.576	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
2R	11875504	2R_11875504_INS [dm3] 2R_15987999_INS [dm6]	A	AAACTGT	1.656e^-4	0.576	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	11875568	2R_11875568_SNP [dm3] 2R_15988063_SNP [dm6]	A	T	1.656e^-4	0.576	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3L	5984660	3L_5984660_SNP [dm3] 3L_5991560_SNP [dm6]	A	G	1.663e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	3309643	3R_3309643_INS [dm3] 3R_7483921_INS [dm6]	T	TG	1.668e^-4	0.576	INTERGENIC
X	12293689	X_12293689_SNP [dm3] X_12399656_SNP [dm6]	A	G	1.669e^-4	0.576	INTERGENIC
2L	8694048	2L_8694048_SNP [dm3] 2L_8694048_SNP [dm6]	A	T	1.673e^-4	0.576	INTRON Hnf4
3R	9355124	3R_9355124_SNP [dm3] 3R_13529402_SNP [dm6]	T	G	1.674e^-4	0.576	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13378482	2R_13378482_SNP [dm3] 2R_17490977_SNP [dm6]	T	G	1.675e^-4	0.576	NON_SYNONYMOUS_CODING NT5E-2
X	21214116	X_21214116_SNP [dm3] X_21343089_SNP [dm6]	C	T	1.677e^-4	0.576	SYNONYMOUS_CODING fliI	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10432689	3R_10432689_SNP [dm3] 3R_14606967_SNP [dm6]	G	C	1.678e^-4	0.576	SYNONYMOUS_CODING stumps	TF binding site mE1_TFBS_HSA
3R	24207457	3R_24207457_SNP [dm3] 3R_28381735_SNP [dm6]	T	C	1.683e^-4	0.576	INTERGENIC
2R	18589432	2R_18589432_SNP [dm3] 2R_22701927_SNP [dm6]	T	G	1.684e^-4	0.576	NON_SYNONYMOUS_CODING CG30259 SPLICE_SITE_REGION CG30259 UPSTREAM robo & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	8904606	X_8904606_SNP [dm3] X_9010573_SNP [dm6]	T	A	1.686e^-4	0.576	INTRON rdgA & 1 other
3R	10351448	3R_10351448_SNP [dm3] 3R_14525726_SNP [dm6]	C	T	1.686e^-4	0.576	INTRON Pde6
X	3552854	X_3552854_SNP [dm3] X_3658821_SNP [dm6]	C	T	1.687e^-4	0.576	INTRON AstA-R1
2L	12912445	2L_12912445_SNP [dm3] 2L_12912445_SNP [dm6]	G	T	1.687e^-4	0.576	UPSTREAM ACXC INTERGENIC
2L	2591803	2L_2591803_SNP [dm3] 2L_2591803_SNP [dm6]	C	T	1.688e^-4	0.576	UPSTREAM CG15394 INTERGENIC
2L	16623523	2L_16623523_SNP [dm3] 2L_16623523_SNP [dm6]	G	C	1.690e^-4	0.576	INTRON CG42389
2L	12908775	2L_12908775_SNP [dm3] 2L_12908775_SNP [dm6]	T	C	1.693e^-4	0.576	INTERGENIC
3R	3283262	3R_3283262_SNP [dm3] 3R_7457540_SNP [dm6]	A	G	1.694e^-4	0.576	INTERGENIC
3R	17167115	3R_17167115_SNP [dm3] 3R_21341393_SNP [dm6]	G	T	1.695e^-4	0.576	INTRON CG16791
X	7512440	X_7512440_SNP [dm3] X_7618407_SNP [dm6]	T	A	1.695e^-4	0.576	INTRON ct
X	17126976	X_17126976_SNP [dm3] X_17232943_SNP [dm6]	T	C	1.697e^-4	0.576	UTR_5_PRIME f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9355132	3R_9355132_SNP [dm3] 3R_13529410_SNP [dm6]	T	C	1.699e^-4	0.576	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10906788	2L_10906788_SNP [dm3] 2L_10906788_SNP [dm6]	C	T	1.700e^-4	0.576	INTRON CG7309
X	3361588	X_3361588_SNP [dm3] X_3467555_SNP [dm6]	C	G	1.703e^-4	0.576	INTRON CR44999 & 1 other
3R	9355137	3R_9355137_SNP [dm3] 3R_13529415_SNP [dm6]	T	G	1.709e^-4	0.576	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26085825	3R_26085825_SNP [dm3] 3R_30260103_SNP [dm6]	A	G	1.711e^-4	0.576	INTERGENIC
3L	21619953	3L_21619953_SNP [dm3] 3L_21626853_SNP [dm6]	A	G	1.724e^-4	0.576	INTRON CG11306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	12975930	2R_12975930_SNP [dm3] 2R_17088425_SNP [dm6]	A	T	1.725e^-4	0.576	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
3R	3262062	3R_3262062_SNP [dm3] 3R_7436340_SNP [dm6]	C	A	1.736e^-4	0.576	INTERGENIC
3R	27621649	3R_27621649_SNP [dm3] 3R_31795927_SNP [dm6]	C	A	1.740e^-4	0.576	SYNONYMOUS_CODING Acf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18297646	2L_18297646_SNP [dm3] 2L_18297646_SNP [dm6]	C	A	1.740e^-4	0.576	DOWNSTREAM CG5790 INTERGENIC
3R	3302397	3R_3302397_SNP [dm3] 3R_7476675_SNP [dm6]	C	G	1.741e^-4	0.576	UPSTREAM tRNA:V3b:84Dd INTERGENIC
3R	26820043	3R_26820043_SNP [dm3] 3R_30994321_SNP [dm6]	G	C	1.741e^-4	0.576	INTRON 5-HT7
2R	4422461	2R_4422461_SNP [dm3] 2R_8534956_SNP [dm6]	G	T	1.744e^-4	0.576	INTERGENIC
3L	16548347	3L_16548347_SNP [dm3] 3L_16555247_SNP [dm6]	T	C	1.745e^-4	0.576	INTERGENIC
3L	19343676	3L_19343676_SNP [dm3] 3L_19350576_SNP [dm6]	G	T	1.752e^-4	0.576	SYNONYMOUS_CODING CG32206	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10049708	2L_10049708_SNP [dm3] 2L_10049708_SNP [dm6]	C	A	1.753e^-4	0.576	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10516962	3R_10516962_INS [dm3] 3R_14691240_INS [dm6]	T	TTC	1.753e^-4	0.576	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3L	7689028	3L_7689028_SNP [dm3] 3L_7695928_SNP [dm6]	T	C	1.758e^-4	0.576	UPSTREAM CG44195 DOWNSTREAM Ank2 INTRON CG32373 & 1 other
2R	5091801	2R_5091801_SNP [dm3] 2R_9204296_SNP [dm6]	G	T	1.759e^-4	0.576	DOWNSTREAM CG8027 INTERGENIC
X	3628637	X_3628637_SNP [dm3] X_3734604_SNP [dm6]	A	C	1.765e^-4	0.576	INTRON tlk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5982642	3L_5982642_SNP [dm3] 3L_5989542_SNP [dm6]	T	C	1.766e^-4	0.576	INTERGENIC
2L	6595188	2L_6595188_SNP [dm3] 2L_6595188_SNP [dm6]	A	T	1.770e^-4	0.576	INTRON CG11319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3657800	2L_3657800_SNP [dm3] 2L_3657800_SNP [dm6]	C	A	1.777e^-4	0.576	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	3055559	X_3055559_SNP [dm3] X_3161526_SNP [dm6]	C	A	1.791e^-4	0.576	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	18331047	2L_18331047_SNP [dm3] 2L_18331047_SNP [dm6]	T	C	1.791e^-4	0.576	INTRON Fas3	TF binding site mE1_TFBS_inv
2R	4549908	2R_4549908_SNP [dm3] 2R_8662403_SNP [dm6]	G	A	1.795e^-4	0.576	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12779942	X_12779942_SNP [dm3] X_12885909_SNP [dm6]	C	A	1.800e^-4	0.576	INTRON Pde9
2R	4625196	2R_4625196_SNP [dm3] 2R_8737691_SNP [dm6]	C	T	1.809e^-4	0.576	UTR_3_PRIME CG42615 INTRON CG8740	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	1840175	2R_1840175_SNP [dm3] 2R_5952670_SNP [dm6]	A	G	1.815e^-4	0.576	INTERGENIC
X	21919890	X_21919890_SNP [dm3] X_22518054_SNP [dm6]	T	C	1.817e^-4	0.576	INTRON CG17600
2R	9615567	2R_9615567_SNP [dm3] 2R_13728062_SNP [dm6]	C	T	1.818e^-4	0.576	INTRON fas
2R	16441698	2R_16441698_SNP [dm3] 2R_20554193_SNP [dm6]	G	A	1.821e^-4	0.576	INTERGENIC
2L	2571821	2L_2571821_SNP [dm3] 2L_2571821_SNP [dm6]	A	G	1.822e^-4	0.576	INTRON Cyp309a2	TF binding site mE1_TFBS_cad
2R	17549821	2R_17549821_SNP [dm3] 2R_21662316_SNP [dm6]	C	G	1.823e^-4	0.576	UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
3L	5786163	3L_5786163_SNP [dm3] 3L_5793063_SNP [dm6]	A	G	1.826e^-4	0.576	SYNONYMOUS_CODING Bre1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	9355196	3R_9355196_SNP [dm3] 3R_13529474_SNP [dm6]	A	T	1.828e^-4	0.576	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18324453	3R_18324453_SNP [dm3] 3R_22498731_SNP [dm6]	G	A	1.830e^-4	0.576	INTRON Octbeta1R
2R	17905578	2R_17905578_SNP [dm3] 2R_22018073_SNP [dm6]	G	T	1.830e^-4	0.576	INTRON CG34370
3R	3273817	3R_3273817_SNP [dm3] 3R_7448095_SNP [dm6]	C	T	1.831e^-4	0.576	INTERGENIC
2R	19257714	2R_19257714_SNP [dm3] 2R_23370191_SNP [dm6]	G	A	1.832e^-4	0.576	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_sens
3L	3501019	3L_3501019_SNP [dm3] 3L_3501019_SNP [dm6]	G	A	1.833e^-4	0.576	INTRON CG42324
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	1.834e^-4	0.576	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7478710	3R_7478710_SNP [dm3] 3R_11652988_SNP [dm6]	A	G	1.837e^-4	0.576	NON_SYNONYMOUS_CODING Elp1
2L	9368528	2L_9368528_SNP [dm3] 2L_9368528_SNP [dm6]	G	A	1.839e^-4	0.576	DOWNSTREAM CG34181 INTERGENIC
2L	12804977	2L_12804977_SNP [dm3] 2L_12804977_SNP [dm6]	G	A	1.848e^-4	0.576	INTERGENIC
2R	12476817	2R_12476817_SNP [dm3] 2R_16589312_SNP [dm6]	C	G	1.848e^-4	0.576	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14972348	3R_14972348_SNP [dm3] 3R_19146626_SNP [dm6]	A	G	1.855e^-4	0.576	INTRON Ppcs	TF binding site BDTNP1_TFBS_dl
2L	3296796	2L_3296796_SNP [dm3] 2L_3296796_SNP [dm6]	G	A	1.857e^-4	0.576	SYNONYMOUS_CODING CG9663
X	14743379	X_14743379_SNP [dm3] X_14849346_SNP [dm6]	T	G	1.860e^-4	0.576	UPSTREAM CG9522 INTRON Flo2
3L	11568933	3L_11568933_SNP [dm3] 3L_11575833_SNP [dm6]	A	G	1.860e^-4	0.576	SPLICE_SITE_REGION CG33489 INTRON CG33489
3R	23316855	3R_23316855_SNP [dm3] 3R_27491133_SNP [dm6]	G	T	1.860e^-4	0.576	INTERGENIC
3R	2180944	3R_2180944_SNP [dm3] 3R_6355222_SNP [dm6]	T	G	1.868e^-4	0.576	INTRON Pak
2L	9269401	2L_9269401_SNP [dm3] 2L_9269401_SNP [dm6]	G	A	1.871e^-4	0.576	INTRON Ggamma30A
2R	10776258	2R_10776258_SNP [dm3] 2R_14888753_SNP [dm6]	G	A	1.871e^-4	0.576	SYNONYMOUS_CODING Cyp6a8	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	13774857	X_13774857_SNP [dm3] X_13880824_SNP [dm6]	T	A	1.873e^-4	0.576	INTRON mamo
2L	14197080	2L_14197080_SNP [dm3] 2L_14197080_SNP [dm6]	C	T	1.873e^-4	0.576	NON_SYNONYMOUS_CODING Dyrk2
2L	10256076	2L_10256076_SNP [dm3] 2L_10256076_SNP [dm6]	A	T	1.874e^-4	0.576	UPSTREAM CG5676 DOWNSTREAM Pten INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	3055574	X_3055574_SNP [dm3] X_3161541_SNP [dm6]	C	A	1.875e^-4	0.576	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9629119	2L_9629119_SNP [dm3] 2L_9629119_SNP [dm6]	T	C	1.882e^-4	0.576	INTERGENIC
3R	26381598	3R_26381598_SNP [dm3] 3R_30555876_SNP [dm6]	T	A	1.882e^-4	0.576	UTR_3_PRIME CG34155 INTRON tmod
2L	8805063	2L_8805063_SNP [dm3] 2L_8805063_SNP [dm6]	G	A	1.884e^-4	0.576	INTERGENIC
2L	17757692	2L_17757692_SNP [dm3] 2L_17757692_SNP [dm6]	T	A	1.888e^-4	0.576	INTRON CadN	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10874785	2R_10874785_SNP [dm3] 2R_14987280_SNP [dm6]	T	C	1.888e^-4	0.576	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15780976	2R_15780976_SNP [dm3] 2R_19893471_SNP [dm6]	G	A	1.894e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14757151	2R_14757151_SNP [dm3] 2R_18869646_SNP [dm6]	A	G	1.895e^-4	0.576	INTERGENIC
3R	10614801	3R_10614801_SNP [dm3] 3R_14789079_SNP [dm6]	C	T	1.901e^-4	0.576	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20036725	2L_20036725_SNP [dm3] 2L_20036725_SNP [dm6]	C	A	1.902e^-4	0.576	INTRON sNPF
2L	16688159	2L_16688159_SNP [dm3] 2L_16688159_SNP [dm6]	C	A	1.902e^-4	0.576	INTRON grp
2L	3754890	2L_3754890_SNP [dm3] 2L_3754890_SNP [dm6]	G	T	1.903e^-4	0.576	DOWNSTREAM CG10019 INTERGENIC
X	20848162	X_20848162_SNP [dm3] X_20977135_SNP [dm6]	T	C	1.910e^-4	0.576	INTERGENIC
3R	27550088	3R_27550088_SNP [dm3] 3R_31724366_SNP [dm6]	T	C	1.910e^-4	0.576	UPSTREAM ttk INTRON ttk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5600940	2L_5600940_SNP [dm3] 2L_5600940_SNP [dm6]	C	T	1.912e^-4	0.576	DOWNSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	5447715	X_5447715_SNP [dm3] X_5553682_SNP [dm6]	T	C	1.916e^-4	0.576	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3R	17183997	3R_17183997_SNP [dm3] 3R_21358275_SNP [dm6]	A	G	1.923e^-4	0.576	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	17851472	3R_17851472_SNP [dm3] 3R_22025750_SNP [dm6]	T	G	1.928e^-4	0.576	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17851423	3R_17851423_INS [dm3] 3R_22025701_INS [dm6]	A	ATAA	1.936e^-4	0.576	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10825491	3R_10825491_SNP [dm3] 3R_14999769_SNP [dm6]	A	G	1.937e^-4	0.576	INTERGENIC
X	6489640	X_6489640_SNP [dm3] X_6595607_SNP [dm6]	C	T	1.938e^-4	0.576	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7510141	2R_7510141_SNP [dm3] 2R_11622636_SNP [dm6]	G	A	1.939e^-4	0.576	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11370186	2R_11370186_SNP [dm3] 2R_15482681_SNP [dm6]	G	T	1.941e^-4	0.576	UTR_5_PRIME CG8180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7248316	2L_7248316_SNP [dm3] 2L_7248316_SNP [dm6]	G	C	1.943e^-4	0.576	INTRON Ndae1	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9356065	3R_9356065_SNP [dm3] 3R_13530343_SNP [dm6]	A	T	1.946e^-4	0.576	UPSTREAM CG42778 INTERGENIC	TF binding site mE1_TFBS_HSA
X	15257978	X_15257978_SNP [dm3] X_15363945_SNP [dm6]	G	A	1.946e^-4	0.576	INTRON acj6
X	18330142	X_18330142_SNP [dm3] X_18436109_SNP [dm6]	T	C	1.950e^-4	0.576	SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2R	1183649	2R_1183649_SNP [dm3] 2R_5296144_SNP [dm6]	A	T	1.951e^-4	0.576	DOWNSTREAM d4 INTERGENIC
3L	13916281	3L_13916281_SNP [dm3] 3L_13923181_SNP [dm6]	G	A	1.964e^-4	0.576	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	10774471	3R_10774471_SNP [dm3] 3R_14948749_SNP [dm6]	C	T	1.968e^-4	0.576	INTERGENIC
3L	13922509	3L_13922509_SNP [dm3] 3L_13929409_SNP [dm6]	T	C	1.968e^-4	0.576	UTR_5_PRIME Gl UPSTREAM CG8833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	10780853	3L_10780853_SNP [dm3] 3L_10787753_SNP [dm6]	T	C	1.969e^-4	0.576	INTERGENIC
3R	3310075	3R_3310075_SNP [dm3] 3R_7484353_SNP [dm6]	G	A	1.981e^-4	0.576	INTERGENIC
X	5359219	X_5359219_SNP [dm3] X_5465186_SNP [dm6]	C	A	1.986e^-4	0.576	INTRON SPR
3R	632820	3R_632820_SNP [dm3] 3R_4807098_SNP [dm6]	T	C	1.987e^-4	0.576	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	6319696	X_6319696_SNP [dm3] X_6425663_SNP [dm6]	A	T	1.988e^-4	0.576	INTRON CG42340
2L	16770436	2L_16770436_SNP [dm3] 2L_16770436_SNP [dm6]	C	T	1.991e^-4	0.576	INTRON Mhc
2R	18595268	2R_18595268_SNP [dm3] 2R_22707763_SNP [dm6]	T	C	1.996e^-4	0.576	UTR_3_PRIME Obp58d UPSTREAM CG30275 DOWNSTREAM CR43735
3L	21819137	3L_21819137_SNP [dm3] 3L_21826037_SNP [dm6]	A	C	2.000e^-4	0.576	SYNONYMOUS_CODING CG7414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9269893	2L_9269893_SNP [dm3] 2L_9269893_SNP [dm6]	A	G	2.006e^-4	0.576	INTRON Ggamma30A
3R	10379182	3R_10379182_SNP [dm3] 3R_14553460_SNP [dm6]	G	C	2.007e^-4	0.576	INTRON Pde6
3L	8410907	3L_8410907_SNP [dm3] 3L_8417807_SNP [dm6]	T	A	2.009e^-4	0.576	SYNONYMOUS_CODING CG32354	TF binding site mE1_TFBS_chinmo
2L	3803109	2L_3803109_SNP [dm3] 2L_3803109_SNP [dm6]	T	C	2.012e^-4	0.576	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	27583846	3R_27583846_SNP [dm3] 3R_31758124_SNP [dm6]	C	T	2.023e^-4	0.576	UTR_5_PRIME CG2187 UPSTREAM CR44263 & 1 other
3R	8496750	3R_8496750_SNP [dm3] 3R_12671028_SNP [dm6]	A	G	2.030e^-4	0.576	SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8996017	3L_8996017_SNP [dm3] 3L_9002917_SNP [dm6]	A	G	2.032e^-4	0.576	DOWNSTREAM CG5087 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9368697	2L_9368697_SNP [dm3] 2L_9368697_SNP [dm6]	C	G	2.036e^-4	0.576	DOWNSTREAM CG34181 INTERGENIC
3L	6012017	3L_6012017_SNP [dm3] 3L_6018917_SNP [dm6]	T	A	2.038e^-4	0.576	INTRON PVRAP
2L	16984255	2L_16984255_SNP [dm3] 2L_16984255_SNP [dm6]	T	C	2.039e^-4	0.576	UPSTREAM CG31806 INTRON beat-IIIb
2R	20140419	2R_20140419_SNP [dm3] 2R_24252896_SNP [dm6]	C	T	2.043e^-4	0.576	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_chinmo
3R	4768260	3R_4768260_SNP [dm3] 3R_8942538_SNP [dm6]	C	T	2.046e^-4	0.576	UTR_3_PRIME skap DOWNSTREAM CG11964 INTRON skap
3R	16200817	3R_16200817_SNP [dm3] 3R_20375095_SNP [dm6]	G	A	2.047e^-4	0.576	INTERGENIC
3R	9369260	3R_9369260_SNP [dm3] 3R_13543538_SNP [dm6]	T	C	2.049e^-4	0.576	DOWNSTREAM CG31337 INTERGENIC
3R	2181967	3R_2181967_SNP [dm3] 3R_6356245_SNP [dm6]	G	A	2.049e^-4	0.576	INTRON Pak
X	15284743	X_15284743_SNP [dm3] X_15390710_SNP [dm6]	G	C	2.052e^-4	0.576	NON_SYNONYMOUS_CODING Cngl
2R	13420800	2R_13420800_SNP [dm3] 2R_17533295_SNP [dm6]	A	C	2.052e^-4	0.576	INTRON Patronin
2R	11875524	2R_11875524_SNP [dm3] 2R_15988019_SNP [dm6]	T	G	2.054e^-4	0.576	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	5857098	2R_5857098_SNP [dm3] 2R_9969593_SNP [dm6]	G	A	2.058e^-4	0.576	INTRON Adam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8194333	2R_8194333_SNP [dm3] 2R_12306828_SNP [dm6]	T	G	2.061e^-4	0.576	UPSTREAM SIP2 INTRON CG17739
2L	12797646	2L_12797646_SNP [dm3] 2L_12797646_SNP [dm6]	C	T	2.064e^-4	0.576	INTERGENIC
2L	16975308	2L_16975308_SNP [dm3] 2L_16975308_SNP [dm6]	A	G	2.065e^-4	0.576	INTRON beat-IIIb
2L	6808891	2L_6808891_SNP [dm3] 2L_6808891_SNP [dm6]	A	T	2.066e^-4	0.576	INTERGENIC
2R	1879241	2R_1879241_SNP [dm3] 2R_5991736_SNP [dm6]	T	C	2.071e^-4	0.576	INTRON Src42A
2L	4300936	2L_4300936_SNP [dm3] 2L_4300936_SNP [dm6]	T	G	2.077e^-4	0.576	INTRON tutl
2L	3803058	2L_3803058_SNP [dm3] 2L_3803058_SNP [dm6]	G	T	2.079e^-4	0.576	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18214287	2R_18214287_SNP [dm3] 2R_22326782_SNP [dm6]	C	T	2.080e^-4	0.576	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18478138	X_18478138_INS [dm3] X_18584105_INS [dm6]	A	AGCACAA	2.089e^-4	0.576	INTERGENIC
3R	8496816	3R_8496816_SNP [dm3] 3R_12671094_SNP [dm6]	C	A	2.090e^-4	0.576	SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12205769	3L_12205769_SNP [dm3] 3L_12212669_SNP [dm6]	G	A	2.091e^-4	0.576	SYNONYMOUS_CODING app DOWNSTREAM app INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17851663	3R_17851663_SNP [dm3] 3R_22025941_SNP [dm6]	A	G	2.093e^-4	0.576	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8368258	X_8368258_SNP [dm3] X_8474225_SNP [dm6]	T	A	2.096e^-4	0.576	INTRON CG33223 & 1 other
X	8368267	X_8368267_SNP [dm3] X_8474234_SNP [dm6]	G	A	2.096e^-4	0.576	INTRON CG33223 & 1 other
2R	11875541	2R_11875541_SNP [dm3] 2R_15988036_SNP [dm6]	A	G	2.097e^-4	0.576	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2L	3876168	2L_3876168_SNP [dm3] 2L_3876168_SNP [dm6]	G	A	2.097e^-4	0.576	INTRON capu
3L	12666128	3L_12666128_SNP [dm3] 3L_12673028_SNP [dm6]	A	C	2.101e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12783034	X_12783034_SNP [dm3] X_12889001_SNP [dm6]	C	G	2.103e^-4	0.576	INTRON Pde9
3L	16915382	3L_16915382_SNP [dm3] 3L_16922282_SNP [dm6]	C	A	2.104e^-4	0.576	UTR_3_PRIME Lmpt UPSTREAM CG13028
3L	8854736	3L_8854736_SNP [dm3] 3L_8861636_SNP [dm6]	G	C	2.106e^-4	0.576	INTRON dally
3R	26694748	3R_26694748_SNP [dm3] 3R_30869026_SNP [dm6]	A	G	2.107e^-4	0.576	UTR_3_PRIME Cpr100A
2R	11875595	2R_11875595_SNP [dm3] 2R_15988090_SNP [dm6]	T	A	2.109e^-4	0.576	UPSTREAM Strn-Mlck DOWNSTREAM CR45021 INTRON Strn-Mlck
3R	10514678	3R_10514678_SNP [dm3] 3R_14688956_SNP [dm6]	G	A	2.109e^-4	0.576	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
X	8564845	X_8564845_SNP [dm3] X_8670812_SNP [dm6]	C	T	2.115e^-4	0.576	INTERGENIC
X	15087846	X_15087846_SNP [dm3] X_15193813_SNP [dm6]	G	A	2.120e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15167347	3R_15167347_SNP [dm3] 3R_19341625_SNP [dm6]	T	C	2.127e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17851465	3R_17851465_SNP [dm3] 3R_22025743_SNP [dm6]	A	T	2.129e^-4	0.576	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21850478	2L_21850478_SNP [dm3] 2L_21850478_SNP [dm6]	T	C	2.136e^-4	0.576	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	17022850	3R_17022850_SNP [dm3] 3R_21197128_SNP [dm6]	G	A	2.136e^-4	0.576	INTRON SNF4Agamma
2L	12753854	2L_12753854_SNP [dm3] 2L_12753854_SNP [dm6]	C	A	2.137e^-4	0.576	INTERGENIC
3R	27575647	3R_27575647_SNP [dm3] 3R_31749925_SNP [dm6]	G	A	2.140e^-4	0.576	SYNONYMOUS_CODING CG1910	TF binding site mE1_TFBS_sens
2R	15571300	2R_15571300_SNP [dm3] 2R_19683795_SNP [dm6]	C	T	2.145e^-4	0.576	UPSTREAM CG34198 EXON CR44505
2L	22159142	2L_22159142_INS [dm3] 2L_22159142_INS [dm6]	T	TATGT	2.151e^-4	0.576	UTR_3_PRIME CG42748 INTRON CG42748
2L	16473267	2L_16473267_SNP [dm3] 2L_16473267_SNP [dm6]	C	A	2.158e^-4	0.576	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
X	15258010	X_15258010_SNP [dm3] X_15363977_SNP [dm6]	A	G	2.159e^-4	0.576	INTRON acj6
X	19701051	X_19701051_SNP [dm3] X_19807018_SNP [dm6]	G	C	2.167e^-4	0.576	INTERGENIC
2L	16618129	2L_16618129_SNP [dm3] 2L_16618129_SNP [dm6]	G	T	2.170e^-4	0.576	INTRON CG42389
3L	8425192	3L_8425192_SNP [dm3] 3L_8432092_SNP [dm6]	G	A	2.171e^-4	0.576	UTR_3_PRIME Cbl DOWNSTREAM Unr
2R	4422458	2R_4422458_SNP [dm3] 2R_8534953_SNP [dm6]	A	T	2.172e^-4	0.576	INTERGENIC
2L	2549871	2L_2549871_SNP [dm3] 2L_2549871_SNP [dm6]	A	T	2.173e^-4	0.576	INTERGENIC
2R	11875553	2R_11875553_SNP [dm3] 2R_15988048_SNP [dm6]	T	A	2.177e^-4	0.576	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3R	9349973	3R_9349973_SNP [dm3] 3R_13524251_SNP [dm6]	A	G	2.179e^-4	0.576	UPSTREAM CG12538 INTERGENIC
2R	1391503	2R_1391503_DEL [dm3] 2R_5503998_DEL [dm6]	TGGGTATT	T	2.179e^-4	0.576	INTRON CG30438 & 1 other	transposable element FlyBase
2R	16138396	2R_16138396_SNP [dm3] 2R_20250891_SNP [dm6]	G	A	2.180e^-4	0.576	INTRON CG9864
3R	3295568	3R_3295568_SNP [dm3] 3R_7469846_SNP [dm6]	T	C	2.185e^-4	0.576	INTERGENIC
3L	5075574	3L_5075574_SNP [dm3] 3L_5075574_SNP [dm6]	T	G	2.188e^-4	0.576	INTRON Con
2L	6029636	2L_6029636_SNP [dm3] 2L_6029636_SNP [dm6]	C	T	2.195e^-4	0.576	INTRON CG9109
3R	19308342	3R_19308342_SNP [dm3] 3R_23482620_SNP [dm6]	A	G	2.200e^-4	0.576	SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17851564	3R_17851564_SNP [dm3] 3R_22025842_SNP [dm6]	A	T	2.201e^-4	0.576	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11875522	2R_11875522_SNP [dm3] 2R_15988017_SNP [dm6]	T	A	2.202e^-4	0.576	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	11877780	2R_11877780_SNP [dm3] 2R_15990275_SNP [dm6]	G	A	2.205e^-4	0.576	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8411312	2L_8411312_SNP [dm3] 2L_8411312_SNP [dm6]	T	C	2.205e^-4	0.576	NON_SYNONYMOUS_CODING CG13397 DOWNSTREAM CG13398	TF binding site mE1_TFBS_Trl
2L	12411220	2L_12411220_SNP [dm3] 2L_12411220_SNP [dm6]	C	T	2.205e^-4	0.576	INTRON vir-1
2R	17731375	2R_17731375_SNP [dm3] 2R_21843870_SNP [dm6]	A	G	2.208e^-4	0.576	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5686986	3L_5686986_SNP [dm3] 3L_5693886_SNP [dm6]	G	A	2.214e^-4	0.576	INTRON sif
3L	1690176	3L_1690176_SNP [dm3] 3L_1690176_SNP [dm6]	C	T	2.215e^-4	0.576	INTRON CG7991
2R	6414514	2R_6414514_INS [dm3] 2R_10527009_INS [dm6]	T	TT	2.216e^-4	0.576	INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10303691	3L_10303691_SNP [dm3] 3L_10310591_SNP [dm6]	T	C	2.218e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA
X	10730639	X_10730639_SNP [dm3] X_10836606_SNP [dm6]	T	G	2.221e^-4	0.576	SYNONYMOUS_CODING sbr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	487317	2L_487317_SNP [dm3] 2L_487317_SNP [dm6]	A	C	2.222e^-4	0.576	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	9369261	3R_9369261_SNP [dm3] 3R_13543539_SNP [dm6]	T	C	2.222e^-4	0.576	DOWNSTREAM CG31337 INTERGENIC
3L	557219	3L_557219_SNP [dm3] 3L_557219_SNP [dm6]	A	G	2.222e^-4	0.576	INTRON hipk
3L	10923226	3L_10923226_SNP [dm3] 3L_10930126_SNP [dm6]	C	T	2.229e^-4	0.578	INTERGENIC
2L	14197428	2L_14197428_SNP [dm3] 2L_14197428_SNP [dm6]	A	G	2.241e^-4	0.578	SYNONYMOUS_CODING Dyrk2 INTRON Dyrk2
2R	10429219	2R_10429219_SNP [dm3] 2R_14541714_SNP [dm6]	A	T	2.241e^-4	0.578	INTRON ttv
X	21918716	X_21918716_SNP [dm3] X_22516880_SNP [dm6]	T	C	2.245e^-4	0.578	INTRON CG17600	transposable element FlyBase
2R	4422460	2R_4422460_SNP [dm3] 2R_8534955_SNP [dm6]	C	T	2.246e^-4	0.578	INTERGENIC
2R	18434872	2R_18434872_SNP [dm3] 2R_22547367_SNP [dm6]	A	T	2.249e^-4	0.578	UPSTREAM px INTRON px
3R	3284999	3R_3284999_SNP [dm3] 3R_7459277_SNP [dm6]	T	A	2.251e^-4	0.578	INTERGENIC
2L	3800250	2L_3800250_SNP [dm3] 2L_3800250_SNP [dm6]	C	A	2.252e^-4	0.578	INTRON CG3921
3L	462131	3L_462131_DEL [dm3] 3L_462131_DEL [dm6]	TATG	T	2.254e^-4	0.578	INTRON klar
2L	4396918	2L_4396918_SNP [dm3] 2L_4396918_SNP [dm6]	T	A	2.260e^-4	0.578	INTRON l_2_k05819
2R	11874272	2R_11874272_SNP [dm3] 2R_15986767_SNP [dm6]	T	A	2.266e^-4	0.579	UPSTREAM CR45021 INTRON Strn-Mlck
3L	5923793	3L_5923793_SNP [dm3] 3L_5930693_SNP [dm6]	A	T	2.268e^-4	0.579	SYNONYMOUS_CODING Rcc1 DOWNSTREAM Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11875516	2R_11875516_SNP [dm3] 2R_15988011_SNP [dm6]	A	C	2.278e^-4	0.579	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	17292245	2R_17292245_SNP [dm3] 2R_21404740_SNP [dm6]	G	A	2.279e^-4	0.579	INTRON Sdc
3R	3309874	3R_3309874_SNP [dm3] 3R_7484152_SNP [dm6]	T	G	2.280e^-4	0.579	INTERGENIC
X	10730211	X_10730211_SNP [dm3] X_10836178_SNP [dm6]	C	A	2.283e^-4	0.579	INTRON sbr	TF binding site mE1_TFBS_HSA
2L	8786730	2L_8786730_SNP [dm3] 2L_8786730_SNP [dm6]	G	C	2.295e^-4	0.579	INTERGENIC
2L	20617742	2L_20617742_SNP [dm3] 2L_20617742_SNP [dm6]	C	T	2.299e^-4	0.579	DOWNSTREAM mir-288 INTRON CR44909
3R	17851414	3R_17851414_SNP [dm3] 3R_22025692_SNP [dm6]	T	C	2.299e^-4	0.579	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10776270	2R_10776270_SNP [dm3] 2R_14888765_SNP [dm6]	C	A	2.304e^-4	0.579	SYNONYMOUS_CODING Cyp6a8	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	13609773	2L_13609773_SNP [dm3] 2L_13609773_SNP [dm6]	T	C	2.307e^-4	0.579	UPSTREAM mir-2489 INTRON kuz
2R	18595272	2R_18595272_SNP [dm3] 2R_22707767_SNP [dm6]	A	G	2.310e^-4	0.579	UTR_3_PRIME Obp58d UPSTREAM CG30275 DOWNSTREAM CR43735
2R	1186557	2R_1186557_SNP [dm3] 2R_5299052_SNP [dm6]	C	T	2.310e^-4	0.579	INTERGENIC
3R	27602143	3R_27602143_SNP [dm3] 3R_31776421_SNP [dm6]	T	A	2.317e^-4	0.579	UPSTREAM faf INTRON CG2126	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	8869789	3R_8869789_INS [dm3] 3R_13044067_INS [dm6]	A	AATA	2.318e^-4	0.579	UTR_3_PRIME CG11670 UPSTREAM CG45122 & 1 other
2R	11879512	2R_11879512_SNP [dm3] 2R_15992007_SNP [dm6]	A	T	2.321e^-4	0.579	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	14063846	2L_14063846_SNP [dm3] 2L_14063846_SNP [dm6]	T	A	2.323e^-4	0.579	INTRON nAChRalpha5
3L	11550730	3L_11550730_INS [dm3] 3L_11557630_INS [dm6]	G	GG	2.326e^-4	0.579	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12922679	2L_12922679_SNP [dm3] 2L_12922679_SNP [dm6]	A	T	2.327e^-4	0.579	INTRON ACXA
2L	1708089	2L_1708089_SNP [dm3] 2L_1708089_SNP [dm6]	C	A	2.328e^-4	0.579	SYNONYMOUS_CODING CG17660 UPSTREAM CR44976	TF binding site mE1_TFBS_cad
2R	18593061	2R_18593061_SNP [dm3] 2R_22705556_SNP [dm6]	G	A	2.334e^-4	0.579	SYNONYMOUS_CODING Obp58b DOWNSTREAM Obp58c
2R	12110314	2R_12110314_SNP [dm3] 2R_16222809_SNP [dm6]	T	C	2.341e^-4	0.579	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	4347005	2L_4347005_SNP [dm3] 2L_4347005_SNP [dm6]	A	C	2.344e^-4	0.579	UPSTREAM CR44697 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2996450	2L_2996450_SNP [dm3] 2L_2996450_SNP [dm6]	G	A	2.350e^-4	0.579	INTRON CG3558
3L	23751639	3L_23751639_INS [dm3] 3L_23758539_INS [dm6]	T	TT	2.350e^-4	0.579	INTERGENIC	transposable element FlyBase
2L	11522977	2L_11522977_SNP [dm3] 2L_11522977_SNP [dm6]	T	C	2.357e^-4	0.579	UPSTREAM CG43153 DOWNSTREAM CG31705 INTERGENIC
3L	20959498	3L_20959498_SNP [dm3] 3L_20966398_SNP [dm6]	T	A	2.362e^-4	0.579	NON_SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287
X	8564788	X_8564788_SNP [dm3] X_8670755_SNP [dm6]	T	A	2.365e^-4	0.579	INTERGENIC
2R	11875508	2R_11875508_MNP [dm3] 2R_15988003_MNP [dm6]	CCAC	GGTT	2.379e^-4	0.579	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	18859702	2R_18859702_SNP [dm3] 2R_22972179_SNP [dm6]	C	T	2.380e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18184757	2L_18184757_SNP [dm3] 2L_18184757_SNP [dm6]	C	T	2.382e^-4	0.579	UTR_5_PRIME CG7180 UPSTREAM CG7180 DOWNSTREAM CR44900 INTRON CG42750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	332105	2L_332105_SNP [dm3] 2L_332105_SNP [dm6]	G	A	2.385e^-4	0.579	NON_SYNONYMOUS_CODING CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
3R	26698654	3R_26698654_SNP [dm3] 3R_30872932_SNP [dm6]	T	A	2.395e^-4	0.579	UPSTREAM CG15545 INTERGENIC
2L	16052621	2L_16052621_SNP [dm3] 2L_16052621_SNP [dm6]	A	C	2.395e^-4	0.579	INTRON beat-Ia
3R	25972368	3R_25972368_SNP [dm3] 3R_30146646_SNP [dm6]	G	A	2.396e^-4	0.579	INTRON AdoR
2L	17770166	2L_17770166_SNP [dm3] 2L_17770166_SNP [dm6]	G	A	2.398e^-4	0.579	INTRON CadN
2R	17992360	2R_17992360_SNP [dm3] 2R_22104855_SNP [dm6]	T	C	2.399e^-4	0.579	SYNONYMOUS_CODING CG6613
2R	3665902	2R_3665902_SNP [dm3] 2R_7778397_SNP [dm6]	C	A	2.408e^-4	0.579	INTRON CG30497 & 1 other
X	16955048	X_16955048_INS [dm3] X_17061015_INS [dm6]	A	AA	2.409e^-4	0.579	INTRON CG45002
2R	11877189	2R_11877189_SNP [dm3] 2R_15989684_SNP [dm6]	G	A	2.417e^-4	0.579	UTR_3_PRIME CG8314 UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10776246	2R_10776246_SNP [dm3] 2R_14888741_SNP [dm6]	C	T	2.417e^-4	0.579	SYNONYMOUS_CODING Cyp6a8	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	10492047	3R_10492047_SNP [dm3] 3R_14666325_SNP [dm6]	C	A	2.418e^-4	0.579	NON_SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_chinmo
X	17126990	X_17126990_SNP [dm3] X_17232957_SNP [dm6]	C	A	2.420e^-4	0.579	UTR_5_PRIME f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5076006	3L_5076006_SNP [dm3] 3L_5076006_SNP [dm6]	A	G	2.420e^-4	0.579	INTRON Con
3R	3267608	3R_3267608_SNP [dm3] 3R_7441886_SNP [dm6]	A	G	2.423e^-4	0.579	UTR_3_PRIME CG14598
3R	10940206	3R_10940206_SNP [dm3] 3R_15114484_SNP [dm6]	A	G	2.424e^-4	0.579	INTRON CG42788
X	8564815	X_8564815_SNP [dm3] X_8670782_SNP [dm6]	A	G	2.424e^-4	0.579	INTERGENIC
X	21228462	X_21228462_SNP [dm3] X_21357435_SNP [dm6]	A	G	2.425e^-4	0.579	UTR_3_PRIME sol UPSTREAM Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16621332	2L_16621332_SNP [dm3] 2L_16621332_SNP [dm6]	C	T	2.426e^-4	0.579	INTRON CG42389
X	21475297	X_21475297_SNP [dm3] X_21604270_SNP [dm6]	G	T	2.432e^-4	0.579	INTRON CG14476	transposable element FlyBase
X	2390382	X_2390382_SNP [dm3] X_2496349_SNP [dm6]	A	T	2.434e^-4	0.579	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3303125	3R_3303125_SNP [dm3] 3R_7477403_SNP [dm6]	A	T	2.435e^-4	0.579	INTERGENIC
3R	3259387	3R_3259387_SNP [dm3] 3R_7433665_SNP [dm6]	C	T	2.440e^-4	0.579	INTERGENIC
3R	15212735	3R_15212735_SNP [dm3] 3R_19387013_SNP [dm6]	T	G	2.440e^-4	0.579	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
3R	15212738	3R_15212738_SNP [dm3] 3R_19387016_SNP [dm6]	C	T	2.440e^-4	0.579	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
2L	3394639	2L_3394639_SNP [dm3] 2L_3394639_SNP [dm6]	G	C	2.447e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9323067	3L_9323067_SNP [dm3] 3L_9329967_SNP [dm6]	C	T	2.448e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12170234	3L_12170234_SNP [dm3] 3L_12177134_SNP [dm6]	G	T	2.451e^-4	0.579	UPSTREAM CAH2 INTERGENIC
X	18807336	X_18807336_SNP [dm3] X_18913303_SNP [dm6]	T	G	2.452e^-4	0.579	DOWNSTREAM CR44708 INTERGENIC
3R	3271116	3R_3271116_SNP [dm3] 3R_7445394_SNP [dm6]	C	T	2.457e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11877902	2R_11877902_SNP [dm3] 2R_15990397_SNP [dm6]	C	A	2.464e^-4	0.579	UPSTREAM Strn-Mlck DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2641459	2L_2641459_SNP [dm3] 2L_2641459_SNP [dm6]	C	A	2.466e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18636898	2R_18636898_SNP [dm3] 2R_22749393_SNP [dm6]	T	A	2.466e^-4	0.579	INTRON CG42260
3R	11219370	3R_11219370_SNP [dm3] 3R_15393648_SNP [dm6]	T	C	2.468e^-4	0.579	INTRON Rbp
3R	4224023	3R_4224023_SNP [dm3] 3R_8398301_SNP [dm6]	G	C	2.468e^-4	0.579	INTRON CG45263
2L	18137409	2L_18137409_SNP [dm3] 2L_18137409_SNP [dm6]	T	A	2.469e^-4	0.579	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12405889	2L_12405889_INS [dm3] 2L_12405889_INS [dm6]	A	AA	2.470e^-4	0.579	INTRON vir-1
2L	9653543	2L_9653543_SNP [dm3] 2L_9653543_SNP [dm6]	T	C	2.476e^-4	0.58	SYNONYMOUS_CODING Apoltp
2L	5497957	2L_5497957_SNP [dm3] 2L_5497957_SNP [dm6]	C	T	2.479e^-4	0.58	INTERGENIC
3L	12170241	3L_12170241_SNP [dm3] 3L_12177141_SNP [dm6]	A	G	2.489e^-4	0.581	UPSTREAM CAH2 INTERGENIC
3R	687677	3R_687677_SNP [dm3] 3R_4861955_SNP [dm6]	T	C	2.497e^-4	0.582	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6171597	2R_6171597_SNP [dm3] 2R_10284092_SNP [dm6]	C	A	2.498e^-4	0.582	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2L	19920118	2L_19920118_SNP [dm3] 2L_19920118_SNP [dm6]	A	T	2.507e^-4	0.582	INTRON sick EXON CR43828
2R	13773102	2R_13773102_DEL [dm3] 2R_17885597_DEL [dm6]	AA	A	2.509e^-4	0.582	INTRON Elk
2L	22133171	2L_22133171_SNP [dm3] 2L_22133171_SNP [dm6]	C	A	2.514e^-4	0.582	DOWNSTREAM CR43241 INTRON CG42748	TF binding site BDTNP1_TFBS_dl
3R	22490622	3R_22490622_SNP [dm3] 3R_26664900_SNP [dm6]	G	A	2.519e^-4	0.582	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2L	13754807	2L_13754807_SNP [dm3] 2L_13754807_SNP [dm6]	T	G	2.519e^-4	0.582	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
2L	15770631	2L_15770631_SNP [dm3] 2L_15770631_SNP [dm6]	C	T	2.520e^-4	0.582	NON_SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11823801	2R_11823801_SNP [dm3] 2R_15936296_SNP [dm6]	C	G	2.525e^-4	0.582	UTR_3_PRIME Mlf DOWNSTREAM Mlf & 1 other	TF binding site mE1_TFBS_HSA
3R	4276542	3R_4276542_SNP [dm3] 3R_8450820_SNP [dm6]	T	G	2.528e^-4	0.582	INTRON CG45263
2R	3696755	2R_3696755_SNP [dm3] 2R_7809250_SNP [dm6]	T	A	2.536e^-4	0.582	DOWNSTREAM CG1550 INTRON sax
3L	16916687	3L_16916687_SNP [dm3] 3L_16923587_SNP [dm6]	G	A	2.537e^-4	0.582	NON_SYNONYMOUS_CODING CG13028 DOWNSTREAM CG13023	TF binding site mE1_TFBS_HSA
3R	4247284	3R_4247284_SNP [dm3] 3R_8421562_SNP [dm6]	T	A	2.541e^-4	0.582	UPSTREAM Obp85a INTRON CG45263
3L	10766157	3L_10766157_SNP [dm3] 3L_10773057_SNP [dm6]	T	C	2.545e^-4	0.582	UTR_3_PRIME CG43245
X	10859634	X_10859634_SNP [dm3] X_10965601_SNP [dm6]	A	C	2.550e^-4	0.582	SYNONYMOUS_CODING C901	TF binding site mE1_TFBS_chinmo
2L	12912287	2L_12912287_SNP [dm3] 2L_12912287_SNP [dm6]	A	G	2.553e^-4	0.582	UPSTREAM ACXC INTERGENIC
3L	10304360	3L_10304360_SNP [dm3] 3L_10311260_SNP [dm6]	A	G	2.556e^-4	0.582	INTERGENIC
2L	17757593	2L_17757593_SNP [dm3] 2L_17757593_SNP [dm6]	T	C	2.557e^-4	0.582	INTRON CadN	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12912058	2L_12912058_SNP [dm3] 2L_12912058_SNP [dm6]	C	T	2.558e^-4	0.582	UPSTREAM ACXC INTERGENIC
3L	18481662	3L_18481662_SNP [dm3] 3L_18488562_SNP [dm6]	T	A	2.567e^-4	0.582	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
3R	24019795	3R_24019795_SNP [dm3] 3R_28194073_SNP [dm6]	G	A	2.567e^-4	0.582	INTRON CG34354
2R	18534124	2R_18534124_INS [dm3] 2R_22646619_INS [dm6]	T	TATATAAGCAT...	2.568e^-4	0.582	UTR_3_PRIME CG30195 UPSTREAM CG2852 DOWNSTREAM CG34446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5923500	3L_5923500_SNP [dm3] 3L_5930400_SNP [dm6]	A	G	2.569e^-4	0.582	UTR_3_PRIME Rcc1 DOWNSTREAM Vap-33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5140526	3L_5140526_SNP [dm3] 3L_5147426_SNP [dm6]	C	A	2.573e^-4	0.582	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7185093	2L_7185093_SNP [dm3] 2L_7185093_SNP [dm6]	G	T	2.577e^-4	0.582	DOWNSTREAM CG4496 INTRON CG4495
3L	16830597	3L_16830597_SNP [dm3] 3L_16837497_SNP [dm6]	C	T	2.582e^-4	0.582	INTERGENIC
X	21915700	X_21915700_SNP [dm3] X_22513864_SNP [dm6]	A	T	2.595e^-4	0.582	DOWNSTREAM CR43962 INTERGENIC
3L	14800130	3L_14800130_SNP [dm3] 3L_14807030_SNP [dm6]	T	G	2.597e^-4	0.582	INTRON CG17839
2L	11945348	2L_11945348_SNP [dm3] 2L_11945348_SNP [dm6]	T	C	2.598e^-4	0.582	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	15482218	2R_15482218_SNP [dm3] 2R_19594713_SNP [dm6]	C	T	2.599e^-4	0.582	SYNONYMOUS_CODING CG16716 INTRON sm
3R	690494	3R_690494_SNP [dm3] 3R_4864772_SNP [dm6]	T	A	2.611e^-4	0.582	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16735945	3L_16735945_SNP [dm3] 3L_16742845_SNP [dm6]	G	T	2.615e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7834231	2L_7834231_SNP [dm3] 2L_7834231_SNP [dm6]	C	T	2.616e^-4	0.582	DOWNSTREAM mts INTERGENIC
2R	16146673	2R_16146673_SNP [dm3] 2R_20259168_SNP [dm6]	A	G	2.617e^-4	0.582	NON_SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3000717	3L_3000717_SNP [dm3] 3L_3000717_SNP [dm6]	T	G	2.618e^-4	0.582	UPSTREAM FMRFaR INTERGENIC
3R	9750608	3R_9750608_DEL [dm3] 3R_13924886_DEL [dm6]	AATTGCCAAGTACCGAT...	A	2.621e^-4	0.582	INTERGENIC
3R	9750643	3R_9750643_SNP [dm3] 3R_13924921_SNP [dm6]	A	T	2.621e^-4	0.582	INTERGENIC
3R	9750655	3R_9750655_DEL [dm3] 3R_13924933_DEL [dm6]	AAAATG	A	2.621e^-4	0.582	INTERGENIC
X	8564820	X_8564820_SNP [dm3] X_8670787_SNP [dm6]	G	A	2.622e^-4	0.582	INTERGENIC
2R	4654481	2R_4654481_SNP [dm3] 2R_8766976_SNP [dm6]	A	C	2.623e^-4	0.582	INTERGENIC
2L	18130437	2L_18130437_DEL [dm3] 2L_18130437_DEL [dm6]	TCATTTGGTCGAT...	T	2.634e^-4	0.582	UTR_3_PRIME kel DOWNSTREAM CG5758
X	8368402	X_8368402_SNP [dm3] X_8474369_SNP [dm6]	A	G	2.636e^-4	0.582	SYNONYMOUS_CODING Cp7Fb INTRON CG33223
3R	23057520	3R_23057520_SNP [dm3] 3R_27231798_SNP [dm6]	G	C	2.636e^-4	0.582	SYNONYMOUS_CODING CG31064 INTRON CG31064
2R	19500608	2R_19500608_SNP [dm3] 2R_23613085_SNP [dm6]	T	G	2.636e^-4	0.582	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
2R	6177225	2R_6177225_SNP [dm3] 2R_10289720_SNP [dm6]	G	C	2.638e^-4	0.582	INTRON CAP
2L	11610049	2L_11610049_SNP [dm3] 2L_11610049_SNP [dm6]	T	C	2.645e^-4	0.582	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3L	5972348	3L_5972348_SNP [dm3] 3L_5979248_SNP [dm6]	T	C	2.647e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	6116197	2R_6116197_SNP [dm3] 2R_10228692_SNP [dm6]	T	C	2.650e^-4	0.582	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4307424	3R_4307424_SNP [dm3] 3R_8481702_SNP [dm6]	A	T	2.660e^-4	0.582	INTERGENIC
2R	2901890	2R_2901890_INS [dm3] 2R_7014385_INS [dm6]	A	CTATT	2.661e^-4	0.582	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11878193	2R_11878193_SNP [dm3] 2R_15990688_SNP [dm6]	G	A	2.661e^-4	0.582	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18039372	2L_18039372_SNP [dm3] 2L_18039372_SNP [dm6]	T	C	2.662e^-4	0.582	INTRON rdo
3L	22389847	3L_22389847_SNP [dm3] 3L_22396747_SNP [dm6]	G	A	2.664e^-4	0.582	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi
3R	14718672	3R_14718672_SNP [dm3] 3R_18892950_SNP [dm6]	T	G	2.664e^-4	0.582	INTERGENIC
2L	6085333	2L_6085333_MNP [dm3] 2L_6085333_MNP [dm6]	ATC	TCT	2.669e^-4	0.582	INTRON Kr-h1
2L	6085340	2L_6085340_MNP [dm3] 2L_6085340_MNP [dm6]	CGT	ATC	2.669e^-4	0.582	INTRON Kr-h1
2L	6085343	2L_6085343_INS [dm3] 2L_6085343_INS [dm6]	T	TATCTG	2.669e^-4	0.582	INTRON Kr-h1
2R	11880064	2R_11880064_SNP [dm3] 2R_15992559_SNP [dm6]	C	T	2.682e^-4	0.583	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24209908	3R_24209908_SNP [dm3] 3R_28384186_SNP [dm6]	A	T	2.682e^-4	0.583	INTERGENIC
3R	25227549	3R_25227549_SNP [dm3] 3R_29401827_SNP [dm6]	G	C	2.684e^-4	0.583	INTRON Ptp99A
2L	12912049	2L_12912049_SNP [dm3] 2L_12912049_SNP [dm6]	A	G	2.688e^-4	0.583	UPSTREAM ACXC INTERGENIC
3R	26751980	3R_26751980_SNP [dm3] 3R_30926258_SNP [dm6]	A	G	2.692e^-4	0.583	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	12293273	X_12293273_SNP [dm3] X_12399240_SNP [dm6]	T	G	2.692e^-4	0.583	INTERGENIC
2L	1961713	2L_1961713_SNP [dm3] 2L_1961713_SNP [dm6]	T	A	2.699e^-4	0.584	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3287946	3R_3287946_SNP [dm3] 3R_7462224_SNP [dm6]	A	G	2.711e^-4	0.584	INTERGENIC
3R	9358588	3R_9358588_DEL [dm3] 3R_13532866_DEL [dm6]	GGATACCGTG	A	2.713e^-4	0.584	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14227966	3L_14227966_DEL [dm3] 3L_14234866_DEL [dm6]	AAGTGT	A	2.713e^-4	0.584	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	21229047	X_21229047_SNP [dm3] X_21358020_SNP [dm6]	G	T	2.714e^-4	0.584	UPSTREAM Sep1 DOWNSTREAM sol INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13923250	2L_13923250_SNP [dm3] 2L_13923250_SNP [dm6]	A	T	2.723e^-4	0.584	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13923251	2L_13923251_SNP [dm3] 2L_13923251_SNP [dm6]	T	A	2.723e^-4	0.584	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6145963	3R_6145963_SNP [dm3] 3R_10320241_SNP [dm6]	G	A	2.724e^-4	0.584	SYNONYMOUS_CODING Bruce
2L	13250387	2L_13250387_INS [dm3] 2L_13250387_INS [dm6]	T	TTT	2.726e^-4	0.584	DOWNSTREAM CG16820 INTERGENIC
2R	11881605	2R_11881605_SNP [dm3] 2R_15994100_SNP [dm6]	C	T	2.731e^-4	0.584	UTR_3_PRIME ATPCL DOWNSTREAM CG8320
X	18330140	X_18330140_SNP [dm3] X_18436107_SNP [dm6]	C	T	2.733e^-4	0.584	NON_SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2R	6531582	2R_6531582_SNP [dm3] 2R_10644077_SNP [dm6]	T	C	2.743e^-4	0.584	INTRON Git	TF binding site mE1_TFBS_HSA
3R	10511965	3R_10511965_SNP [dm3] 3R_14686243_SNP [dm6]	T	G	2.744e^-4	0.584	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1308351	2L_1308351_SNP [dm3] 2L_1308351_SNP [dm6]	T	C	2.749e^-4	0.584	INTERGENIC
2R	11875442	2R_11875442_SNP [dm3] 2R_15987937_SNP [dm6]	G	A	2.754e^-4	0.584	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2L	10943829	2L_10943829_SNP [dm3] 2L_10943829_SNP [dm6]	T	A	2.756e^-4	0.584	UPSTREAM CR44492 & 1 other INTRON dpr2
2L	11687655	2L_11687655_SNP [dm3] 2L_11687655_SNP [dm6]	T	G	2.757e^-4	0.584	INTERGENIC
2L	17631913	2L_17631913_SNP [dm3] 2L_17631913_SNP [dm6]	C	A	2.760e^-4	0.584	INTERGENIC
2L	13754804	2L_13754804_SNP [dm3] 2L_13754804_SNP [dm6]	C	T	2.760e^-4	0.584	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
X	3055641	X_3055641_SNP [dm3] X_3161608_SNP [dm6]	A	G	2.764e^-4	0.584	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	2904562	2R_2904562_SNP [dm3] 2R_7017057_SNP [dm6]	G	C	2.773e^-4	0.584	NON_SYNONYMOUS_CODING Tsp42Ee
2L	16996169	2L_16996169_INS [dm3] 2L_16996169_INS [dm6]	A	ATA	2.776e^-4	0.584	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1961717	2L_1961717_SNP [dm3] 2L_1961717_SNP [dm6]	G	C	2.776e^-4	0.584	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9653609	2L_9653609_SNP [dm3] 2L_9653609_SNP [dm6]	T	C	2.777e^-4	0.584	SYNONYMOUS_CODING Apoltp
3R	3600154	3R_3600154_SNP [dm3] 3R_7774432_SNP [dm6]	T	C	2.777e^-4	0.584	INTERGENIC
3L	8373904	3L_8373904_SNP [dm3] 3L_8380804_SNP [dm6]	G	T	2.781e^-4	0.584	DOWNSTREAM ImpE1 INTRON ImpE1
3R	10514630	3R_10514630_SNP [dm3] 3R_14688908_SNP [dm6]	T	A	2.781e^-4	0.584	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22921126	3L_22921126_DEL [dm3] 3L_22928026_DEL [dm6]	AGC	A	2.792e^-4	0.585	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	17882211	2L_17882211_SNP [dm3] 2L_17882211_SNP [dm6]	C	T	2.793e^-4	0.585	INTERGENIC
2R	18534158	2R_18534158_SNP [dm3] 2R_22646653_SNP [dm6]	G	T	2.794e^-4	0.585	UTR_3_PRIME CG30195 UPSTREAM CG2852 DOWNSTREAM CG34446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5971558	3R_5971558_SNP [dm3] 3R_10145836_SNP [dm6]	G	T	2.799e^-4	0.585	INTRON Invadolysin
2L	3721772	2L_3721772_SNP [dm3] 2L_3721772_SNP [dm6]	A	G	2.803e^-4	0.585	INTRON Shaw
2L	18981834	2L_18981834_SNP [dm3] 2L_18981834_SNP [dm6]	A	T	2.805e^-4	0.585	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3360820	2L_3360820_SNP [dm3] 2L_3360820_SNP [dm6]	C	T	2.808e^-4	0.585	SYNONYMOUS_CODING CG34394
2L	10256063	2L_10256063_SNP [dm3] 2L_10256063_SNP [dm6]	A	T	2.820e^-4	0.587	UPSTREAM CG5676 DOWNSTREAM Pten INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	18515466	2R_18515466_SNP [dm3] 2R_22627961_SNP [dm6]	C	A	2.825e^-4	0.587	INTRON CG33143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11476085	3L_11476085_SNP [dm3] 3L_11482985_SNP [dm6]	T	G	2.828e^-4	0.587	INTERGENIC
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	2.829e^-4	0.587	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	7266966	3L_7266966_SNP [dm3] 3L_7273866_SNP [dm6]	T	C	2.832e^-4	0.587	INTRON unc-13-4A
2L	12911378	2L_12911378_SNP [dm3] 2L_12911378_SNP [dm6]	T	G	2.833e^-4	0.587	INTERGENIC
3L	17157660	3L_17157660_SNP [dm3] 3L_17164560_SNP [dm6]	G	C	2.839e^-4	0.587	INTRON Rbp6
2L	11687656	2L_11687656_SNP [dm3] 2L_11687656_SNP [dm6]	G	T	2.842e^-4	0.587	INTERGENIC
2L	12907014	2L_12907014_SNP [dm3] 2L_12907014_SNP [dm6]	T	G	2.848e^-4	0.588	INTERGENIC
2L	5485331	2L_5485331_DEL [dm3] 2L_5485331_DEL [dm6]	AA	A	2.854e^-4	0.588	INTERGENIC
2R	11877762	2R_11877762_SNP [dm3] 2R_15990257_SNP [dm6]	A	G	2.863e^-4	0.589	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5076167	3L_5076167_SNP [dm3] 3L_5076167_SNP [dm6]	G	T	2.873e^-4	0.589	INTRON Con
2L	1850644	2L_1850644_SNP [dm3] 2L_1850644_SNP [dm6]	A	G	2.875e^-4	0.589	INTRON wry
3R	27634077	3R_27634077_SNP [dm3] 3R_31808355_SNP [dm6]	G	A	2.881e^-4	0.589	SYNONYMOUS_CODING CG11576	TF binding site mE1_TFBS_cad
3L	10780749	3L_10780749_SNP [dm3] 3L_10787649_SNP [dm6]	T	C	2.882e^-4	0.589	INTERGENIC
2R	3674875	2R_3674875_SNP [dm3] 2R_7787370_SNP [dm6]	C	T	2.884e^-4	0.589	SYNONYMOUS_CODING CanB2 DOWNSTREAM mir-4980
2L	3551684	2L_3551684_INS [dm3] 2L_3551684_INS [dm6]	A	AGCTGGAGCTGGA...	2.885e^-4	0.589	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16577309	2R_16577309_SNP [dm3] 2R_20689804_SNP [dm6]	T	C	2.885e^-4	0.589	INTERGENIC
2R	10595209	2R_10595209_SNP [dm3] 2R_14707704_SNP [dm6]	A	C	2.890e^-4	0.589	INTRON mspo
2L	5485356	2L_5485356_SNP [dm3] 2L_5485356_SNP [dm6]	A	C	2.890e^-4	0.589	INTERGENIC
2L	9344266	2L_9344266_SNP [dm3] 2L_9344266_SNP [dm6]	T	C	2.892e^-4	0.589	SYNONYMOUS_CODING CG3748
3R	3329833	3R_3329833_DEL [dm3] 3R_7504111_DEL [dm6]	GAAATTAAAGG...	G	2.899e^-4	0.589	INTRON alpha-Est9
2L	3796079	2L_3796079_SNP [dm3] 2L_3796079_SNP [dm6]	G	A	2.901e^-4	0.589	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3055590	X_3055590_SNP [dm3] X_3161557_SNP [dm6]	T	A	2.911e^-4	0.591	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16915386	3L_16915386_DEL [dm3] 3L_16922286_DEL [dm6]	GAATG	G	2.915e^-4	0.591	UTR_3_PRIME Lmpt UPSTREAM CG13028
3R	3307292	3R_3307292_SNP [dm3] 3R_7481570_SNP [dm6]	G	T	2.918e^-4	0.591	INTERGENIC
3L	8755121	3L_8755121_SNP [dm3] 3L_8762021_SNP [dm6]	A	G	2.937e^-4	0.593	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3328097	3R_3328097_SNP [dm3] 3R_7502375_SNP [dm6]	T	C	2.944e^-4	0.593	UTR_5_PRIME CG1287 INTRON alpha-Est9
2L	5946955	2L_5946955_SNP [dm3] 2L_5946955_SNP [dm6]	G	A	2.948e^-4	0.593	DOWNSTREAM CR44986 INTRON Gpdh
2L	20117012	2L_20117012_SNP [dm3] 2L_20117012_SNP [dm6]	A	C	2.950e^-4	0.593	INTERGENIC	transposable element FlyBase
2R	15480515	2R_15480515_SNP [dm3] 2R_19593010_SNP [dm6]	C	A	2.952e^-4	0.593	UPSTREAM CG16716 INTRON sm
2L	5392050	2L_5392050_SNP [dm3] 2L_5392050_SNP [dm6]	T	C	2.952e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	3287208	3R_3287208_SNP [dm3] 3R_7461486_SNP [dm6]	T	G	2.957e^-4	0.593	INTERGENIC
3L	7955549	3L_7955549_SNP [dm3] 3L_7962449_SNP [dm6]	T	C	2.959e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
X	8564823	X_8564823_SNP [dm3] X_8670790_SNP [dm6]	A	T	2.960e^-4	0.593	INTERGENIC
2R	9610573	2R_9610573_SNP [dm3] 2R_13723068_SNP [dm6]	C	A	2.960e^-4	0.593	INTRON fas
2R	11823798	2R_11823798_SNP [dm3] 2R_15936293_SNP [dm6]	A	G	2.969e^-4	0.593	UTR_3_PRIME Mlf DOWNSTREAM Mlf & 1 other	TF binding site mE1_TFBS_HSA
X	14214308	X_14214308_SNP [dm3] X_14320275_SNP [dm6]	G	T	2.980e^-4	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11142575	3L_11142575_SNP [dm3] 3L_11149475_SNP [dm6]	A	T	2.984e^-4	0.593	DOWNSTREAM CG6216 INTRON CG32082
2L	10614162	2L_10614162_SNP [dm3] 2L_10614162_SNP [dm6]	G	T	2.985e^-4	0.593	INTRON Trim9
2L	18333803	2L_18333803_SNP [dm3] 2L_18333803_SNP [dm6]	C	A	2.988e^-4	0.593	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	20826568	X_20826568_SNP [dm3] X_20955541_SNP [dm6]	A	G	2.996e^-4	0.593	INTERGENIC
2L	17855237	2L_17855237_SNP [dm3] 2L_17855237_SNP [dm6]	T	A	2.996e^-4	0.593	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14205913	3R_14205913_INS [dm3] 3R_18380191_INS [dm6]	T	TAGCACGTTTACTGGGAT...	3.001e^-4	0.593	INTRON CG7675
2L	5602540	2L_5602540_SNP [dm3] 2L_5602540_SNP [dm6]	G	A	3.001e^-4	0.593	UTR_3_PRIME CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12191348	3R_12191348_SNP [dm3] 3R_16365626_SNP [dm6]	A	T	3.001e^-4	0.593	UTR_5_PRIME CG14880	regulatory region REDfly_CRMs
2R	6641984	2R_6641984_SNP [dm3] 2R_10754479_SNP [dm6]	T	C	3.013e^-4	0.593	INTRON CG33144
2L	10152972	2L_10152972_SNP [dm3] 2L_10152972_SNP [dm6]	C	A	3.015e^-4	0.593	NON_SYNONYMOUS_CODING CG4839 INTRON CG44153
2R	7512424	2R_7512424_SNP [dm3] 2R_11624919_SNP [dm6]	C	G	3.018e^-4	0.593	NON_SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17842766	2L_17842766_INS [dm3] 2L_17842766_INS [dm6]	T	TGTAT	3.032e^-4	0.593	INTRON CadN2
3R	26698651	3R_26698651_DEL [dm3] 3R_30872929_DEL [dm6]	AT	A	3.032e^-4	0.593	UPSTREAM CG15545 INTERGENIC
2L	9360406	2L_9360406_SNP [dm3] 2L_9360406_SNP [dm6]	G	T	3.038e^-4	0.593	INTERGENIC
3R	14941463	3R_14941463_SNP [dm3] 3R_19115741_SNP [dm6]	A	C	3.042e^-4	0.593	INTRON CG6040
2R	9615620	2R_9615620_SNP [dm3] 2R_13728115_SNP [dm6]	C	T	3.044e^-4	0.593	INTRON fas
3L	477057	3L_477057_SNP [dm3] 3L_477057_SNP [dm6]	A	G	3.046e^-4	0.593	INTRON klar
3R	3288879	3R_3288879_SNP [dm3] 3R_7463157_SNP [dm6]	G	T	3.046e^-4	0.593	INTERGENIC
2L	12901518	2L_12901518_SNP [dm3] 2L_12901518_SNP [dm6]	G	A	3.048e^-4	0.593	INTERGENIC
2R	19500631	2R_19500631_SNP [dm3] 2R_23613108_SNP [dm6]	G	T	3.049e^-4	0.593	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
3L	1472109	3L_1472109_SNP [dm3] 3L_1472109_SNP [dm6]	T	C	3.051e^-4	0.593	UPSTREAM CG32319 INTRON Ptp61F
3L	3534640	3L_3534640_SNP [dm3] 3L_3534640_SNP [dm6]	T	C	3.059e^-4	0.593	INTRON Eip63E
X	22328172	X_22328172_SNP [dm3] X_22926336_SNP [dm6]	T	A	3.059e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12272758	2R_12272758_SNP [dm3] 2R_16385253_SNP [dm6]	A	G	3.061e^-4	0.593	UTR_3_PRIME CG43187
3L	8853881	3L_8853881_SNP [dm3] 3L_8860781_SNP [dm6]	C	T	3.062e^-4	0.593	INTRON dally
2R	11877750	2R_11877750_SNP [dm3] 2R_15990245_SNP [dm6]	A	G	3.072e^-4	0.593	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17806202	2R_17806202_SNP [dm3] 2R_21918697_SNP [dm6]	G	A	3.073e^-4	0.593	INTRON Fili
3R	2769706	3R_2769706_SNP [dm3] 3R_6943984_SNP [dm6]	T	C	3.074e^-4	0.593	INTRON Antp
X	21071420	X_21071420_SNP [dm3] X_21200393_SNP [dm6]	G	C	3.076e^-4	0.593	INTERGENIC
2L	12756612	2L_12756612_SNP [dm3] 2L_12756612_SNP [dm6]	T	C	3.079e^-4	0.593	INTERGENIC
3L	18091998	3L_18091998_SNP [dm3] 3L_18098898_SNP [dm6]	T	A	3.080e^-4	0.593	INTRON CG13698
3R	23316863	3R_23316863_SNP [dm3] 3R_27491141_SNP [dm6]	A	T	3.083e^-4	0.593	INTERGENIC
3L	16330970	3L_16330970_SNP [dm3] 3L_16337870_SNP [dm6]	T	A	3.086e^-4	0.593	INTERGENIC
2R	7515525	2R_7515525_SNP [dm3] 2R_11628020_SNP [dm6]	A	T	3.090e^-4	0.593	INTRON CG9005	TF binding site BDTNP1_TFBS_dl
2R	7515526	2R_7515526_SNP [dm3] 2R_11628021_SNP [dm6]	T	A	3.090e^-4	0.593	INTRON CG9005	TF binding site BDTNP1_TFBS_dl
2L	2673013	2L_2673013_SNP [dm3] 2L_2673013_SNP [dm6]	T	C	3.094e^-4	0.593	DOWNSTREAM Gr23a INTERGENIC
3R	27566940	3R_27566940_SNP [dm3] 3R_31741218_SNP [dm6]	G	T	3.095e^-4	0.593	INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
3L	10273267	3L_10273267_SNP [dm3] 3L_10280167_SNP [dm6]	T	C	3.095e^-4	0.593	INTERGENIC
3L	1690161	3L_1690161_SNP [dm3] 3L_1690161_SNP [dm6]	C	T	3.096e^-4	0.593	INTRON CG7991
3R	9491790	3R_9491790_SNP [dm3] 3R_13666068_SNP [dm6]	A	G	3.097e^-4	0.593	DOWNSTREAM Task6 INTRON B52
2L	9369309	2L_9369309_SNP [dm3] 2L_9369309_SNP [dm6]	G	A	3.100e^-4	0.593	DOWNSTREAM CG34181 & 1 other INTERGENIC
X	17126966	X_17126966_SNP [dm3] X_17232933_SNP [dm6]	G	T	3.100e^-4	0.593	UPSTREAM f INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5904805	3R_5904805_INS [dm3] 3R_10079083_INS [dm6]	A	AAGGAA	3.110e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3284972	3R_3284972_SNP [dm3] 3R_7459250_SNP [dm6]	G	T	3.122e^-4	0.595	INTERGENIC
2L	12908766	2L_12908766_SNP [dm3] 2L_12908766_SNP [dm6]	C	T	3.123e^-4	0.595	INTERGENIC
X	15262101	X_15262101_DEL [dm3] X_15368068_DEL [dm6]	CCTCGGTCAGGCGCCCC...	C	3.123e^-4	0.595	INTRON acj6
3L	6996697	3L_6996697_SNP [dm3] 3L_7003597_SNP [dm6]	T	C	3.135e^-4	0.597	INTRON Mp
3R	17206904	3R_17206904_SNP [dm3] 3R_21381182_SNP [dm6]	C	G	3.141e^-4	0.597	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	10273181	3L_10273181_SNP [dm3] 3L_10280081_SNP [dm6]	C	T	3.143e^-4	0.597	INTERGENIC
2R	4426542	2R_4426542_SNP [dm3] 2R_8539037_SNP [dm6]	C	T	3.146e^-4	0.597	INTERGENIC
2R	11876525	2R_11876525_SNP [dm3] 2R_15989020_SNP [dm6]	C	T	3.155e^-4	0.597	UTR_5_PRIME Strn-Mlck DOWNSTREAM CR45021 & 1 other
2L	10943850	2L_10943850_SNP [dm3] 2L_10943850_SNP [dm6]	A	T	3.156e^-4	0.597	UPSTREAM CR44492 & 1 other INTRON dpr2
3R	27091954	3R_27091954_SNP [dm3] 3R_31266232_SNP [dm6]	C	G	3.156e^-4	0.597	SYNONYMOUS_CODING ppk24
2L	16618245	2L_16618245_DEL [dm3] 2L_16618245_DEL [dm6]	TCC	GA	3.160e^-4	0.597	INTRON CG42389
2L	8912880	2L_8912880_SNP [dm3] 2L_8912880_SNP [dm6]	C	T	3.161e^-4	0.597	INTRON CG34398
2L	3803031	2L_3803031_SNP [dm3] 2L_3803031_SNP [dm6]	T	A	3.164e^-4	0.597	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	27002086	3R_27002086_SNP [dm3] 3R_31176364_SNP [dm6]	C	A	3.170e^-4	0.597	INTRON Gycbeta100B
3R	2697807	3R_2697807_SNP [dm3] 3R_6872085_SNP [dm6]	G	T	3.171e^-4	0.597	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	18596498	2R_18596498_SNP [dm3] 2R_22708993_SNP [dm6]	C	A	3.175e^-4	0.597	UPSTREAM CR43735 INTRON CG30275
3L	16548881	3L_16548881_SNP [dm3] 3L_16555781_SNP [dm6]	A	T	3.179e^-4	0.598	INTERGENIC
2L	9315396	2L_9315396_SNP [dm3] 2L_9315396_SNP [dm6]	G	A	3.191e^-4	0.598	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17757843	2L_17757843_SNP [dm3] 2L_17757843_SNP [dm6]	G	C	3.196e^-4	0.598	INTRON CadN	TF binding site mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.617e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04286

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.1693	0.0277

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2393 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14220096	3L_14220096_SNP [dm3] 3L_14226996_SNP [dm6]	A	T	7.248e^-8	0.136	INTRON nuf
3L	14220060	3L_14220060_SNP [dm3] 3L_14226960_SNP [dm6]	C	A	2.228e^-7	0.206	INTRON nuf
3R	4307793	3R_4307793_SNP [dm3] 3R_8482071_SNP [dm6]	T	C	3.745e^-7	0.206	INTERGENIC
3L	14220283	3L_14220283_SNP [dm3] 3L_14227183_SNP [dm6]	C	T	5.855e^-7	0.206	INTRON nuf
3L	14220118	3L_14220118_SNP [dm3] 3L_14227018_SNP [dm6]	C	T	6.481e^-7	0.206	INTRON nuf
3L	14220111	3L_14220111_SNP [dm3] 3L_14227011_SNP [dm6]	T	A	6.574e^-7	0.206	INTRON nuf
2R	11878391	2R_11878391_SNP [dm3] 2R_15990886_SNP [dm6]	C	G	9.432e^-7	0.223	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14220103	3L_14220103_SNP [dm3] 3L_14227003_SNP [dm6]	C	G	1.047e^-6	0.223	INTRON nuf
3L	14220054	3L_14220054_SNP [dm3] 3L_14226954_SNP [dm6]	G	T	1.069e^-6	0.223	INTRON nuf	TF binding site mE1_TFBS_bab1
2R	11879857	2R_11879857_SNP [dm3] 2R_15992352_SNP [dm6]	A	T	1.226e^-6	0.23	UTR_5_PRIME Pex11 UPSTREAM CG8320	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	14220016	3L_14220016_SNP [dm3] 3L_14226916_SNP [dm6]	A	C	1.512e^-6	0.253	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219878	3L_14219878_SNP [dm3] 3L_14226778_SNP [dm6]	T	G	1.622e^-6	0.253	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219908	3L_14219908_SNP [dm3] 3L_14226808_SNP [dm6]	G	A	1.911e^-6	0.264	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219901	3L_14219901_SNP [dm3] 3L_14226801_SNP [dm6]	T	C	1.969e^-6	0.264	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	12412719	3L_12412719_SNP [dm3] 3L_12419619_SNP [dm6]	C	G	2.724e^-6	0.32	INTERGENIC
2R	15059836	2R_15059836_SNP [dm3] 2R_19172331_SNP [dm6]	G	C	3.051e^-6	0.32	INTRON CG10737
2R	11878259	2R_11878259_SNP [dm3] 2R_15990754_SNP [dm6]	G	A	3.118e^-6	0.32	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14198012	2R_14198012_SNP [dm3] 2R_18310507_SNP [dm6]	G	A	3.528e^-6	0.32	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14220354	3L_14220354_SNP [dm3] 3L_14227254_SNP [dm6]	A	G	3.556e^-6	0.32	INTRON nuf
3L	14219885	3L_14219885_SNP [dm3] 3L_14226785_SNP [dm6]	T	A	3.577e^-6	0.32	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	5973162	3R_5973162_SNP [dm3] 3R_10147440_SNP [dm6]	A	C	3.837e^-6	0.32	INTRON Invadolysin
3L	14219896	3L_14219896_SNP [dm3] 3L_14226796_SNP [dm6]	C	A	3.923e^-6	0.32	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219867	3L_14219867_SNP [dm3] 3L_14226767_SNP [dm6]	C	T	4.046e^-6	0.32	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219716	3L_14219716_SNP [dm3] 3L_14226616_SNP [dm6]	A	G	4.094e^-6	0.32	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	16915586	3L_16915586_SNP [dm3] 3L_16922486_SNP [dm6]	C	A	4.525e^-6	0.33	UTR_3_PRIME Lmpt UPSTREAM CG13028
3L	14219866	3L_14219866_SNP [dm3] 3L_14226766_SNP [dm6]	A	G	4.576e^-6	0.33	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	14219989	3L_14219989_SNP [dm3] 3L_14226889_SNP [dm6]	T	G	4.837e^-6	0.336	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	9942562	3R_9942562_SNP [dm3] 3R_14116840_SNP [dm6]	C	T	5.580e^-6	0.374	INTRON Kif19A
3L	16915598	3L_16915598_SNP [dm3] 3L_16922498_SNP [dm6]	T	G	6.204e^-6	0.401	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
2R	16573846	2R_16573846_SNP [dm3] 2R_20686341_SNP [dm6]	A	G	7.484e^-6	0.439	SYNONYMOUS_CODING Gr57a
2L	7805497	2L_7805497_SNP [dm3] 2L_7805497_SNP [dm6]	G	C	7.758e^-6	0.439	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6027243	3L_6027243_SNP [dm3] 3L_6034143_SNP [dm6]	G	C	7.832e^-6	0.439	SYNONYMOUS_CODING CG10477
3R	25222678	3R_25222678_SNP [dm3] 3R_29396956_SNP [dm6]	A	G	8.014e^-6	0.439	INTRON Ptp99A
2R	11880064	2R_11880064_SNP [dm3] 2R_15992559_SNP [dm6]	C	T	8.061e^-6	0.439	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11879539	2R_11879539_SNP [dm3] 2R_15992034_SNP [dm6]	A	G	8.196e^-6	0.439	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22667757	3R_22667757_SNP [dm3] 3R_26842035_SNP [dm6]	A	T	8.942e^-6	0.456	UTR_3_PRIME Tl DOWNSTREAM Lerp & 1 other
2R	11880461	2R_11880461_SNP [dm3] 2R_15992956_SNP [dm6]	C	A	8.992e^-6	0.456	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14220330	3L_14220330_SNP [dm3] 3L_14227230_SNP [dm6]	T	C	9.466e^-6	0.467	INTRON nuf
3R	5973299	3R_5973299_SNP [dm3] 3R_10147577_SNP [dm6]	C	G	1.025e^-5	0.473	INTRON Invadolysin
2R	11877762	2R_11877762_SNP [dm3] 2R_15990257_SNP [dm6]	A	G	1.028e^-5	0.473	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11877780	2R_11877780_SNP [dm3] 2R_15990275_SNP [dm6]	G	A	1.045e^-5	0.473	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12910441	X_12910441_INS [dm3] X_13016408_INS [dm6]	T	TTCGAAGT	1.071e^-5	0.473	INTRON rad
2R	11877750	2R_11877750_SNP [dm3] 2R_15990245_SNP [dm6]	A	G	1.121e^-5	0.473	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11877637	2R_11877637_SNP [dm3] 2R_15990132_SNP [dm6]	A	G	1.126e^-5	0.473	UPSTREAM Strn-Mlck INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11882421	2R_11882421_SNP [dm3] 2R_15994916_SNP [dm6]	G	A	1.166e^-5	0.473	SYNONYMOUS_CODING ATPCL
2L	8048128	2L_8048128_SNP [dm3] 2L_8048128_SNP [dm6]	T	C	1.177e^-5	0.473	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	9936346	2L_9936346_SNP [dm3] 2L_9936346_SNP [dm6]	A	G	1.185e^-5	0.473	UTR_3_PRIME CG31712 UPSTREAM CR45007 INTRON CG31712
2R	11880107	2R_11880107_SNP [dm3] 2R_15992602_SNP [dm6]	G	A	1.231e^-5	0.476	UTR_5_PRIME CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	13395220	2L_13395220_SNP [dm3] 2L_13395220_SNP [dm6]	G	T	1.249e^-5	0.476	UPSTREAM RpL24 DOWNSTREAM CG16957 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4152514	3R_4152514_SNP [dm3] 3R_8326792_SNP [dm6]	T	G	1.268e^-5	0.476	INTRON Poxm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12420730	2L_12420730_SNP [dm3] 2L_12420730_SNP [dm6]	C	G	1.330e^-5	0.489	INTRON vir-1
3R	4312731	3R_4312731_SNP [dm3] 3R_8487009_SNP [dm6]	T	G	1.460e^-5	0.517	INTERGENIC
3L	12617689	3L_12617689_SNP [dm3] 3L_12624589_SNP [dm6]	C	T	1.464e^-5	0.517	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25166499	3R_25166499_SNP [dm3] 3R_29340777_SNP [dm6]	A	C	1.489e^-5	0.517	INTERGENIC
2L	2641459	2L_2641459_SNP [dm3] 2L_2641459_SNP [dm6]	C	A	1.530e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14197080	2L_14197080_SNP [dm3] 2L_14197080_SNP [dm6]	C	T	1.573e^-5	0.524	NON_SYNONYMOUS_CODING Dyrk2
3R	4307279	3R_4307279_SNP [dm3] 3R_8481557_SNP [dm6]	G	T	1.647e^-5	0.524	INTERGENIC
2L	8048213	2L_8048213_SNP [dm3] 2L_8048213_SNP [dm6]	T	C	1.661e^-5	0.524	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5879744	2L_5879744_SNP [dm3] 2L_5879744_SNP [dm6]	C	A	1.832e^-5	0.524	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11878193	2R_11878193_SNP [dm3] 2R_15990688_SNP [dm6]	G	A	1.865e^-5	0.524	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14219766	3L_14219766_SNP [dm3] 3L_14226666_SNP [dm6]	C	G	1.867e^-5	0.524	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	18726545	3R_18726545_DEL [dm3] 3R_22900823_DEL [dm6]	TT	T	1.887e^-5	0.524	INTRON klg
3R	26935914	3R_26935914_SNP [dm3] 3R_31110192_SNP [dm6]	C	T	1.901e^-5	0.524	INTERGENIC
2L	6085333	2L_6085333_MNP [dm3] 2L_6085333_MNP [dm6]	ATC	TCT	2.048e^-5	0.524	INTRON Kr-h1
2L	6085340	2L_6085340_MNP [dm3] 2L_6085340_MNP [dm6]	CGT	ATC	2.048e^-5	0.524	INTRON Kr-h1
2L	6085343	2L_6085343_INS [dm3] 2L_6085343_INS [dm6]	T	TATCTG	2.048e^-5	0.524	INTRON Kr-h1
2R	11876525	2R_11876525_SNP [dm3] 2R_15989020_SNP [dm6]	C	T	2.095e^-5	0.524	UTR_5_PRIME Strn-Mlck DOWNSTREAM CR45021 & 1 other
X	8142664	X_8142664_SNP [dm3] X_8248631_SNP [dm6]	G	A	2.134e^-5	0.524	DOWNSTREAM ND75 & 1 other INTERGENIC
X	16698634	X_16698634_SNP [dm3] X_16804601_SNP [dm6]	A	T	2.198e^-5	0.524	NON_SYNONYMOUS_CODING CG13005	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12420710	2L_12420710_SNP [dm3] 2L_12420710_SNP [dm6]	G	A	2.227e^-5	0.524	INTRON vir-1
2L	12420721	2L_12420721_SNP [dm3] 2L_12420721_SNP [dm6]	T	C	2.227e^-5	0.524	INTRON vir-1
3R	10505796	3R_10505796_SNP [dm3] 3R_14680074_SNP [dm6]	T	G	2.232e^-5	0.524	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	14219864	3L_14219864_SNP [dm3] 3L_14226764_SNP [dm6]	A	G	2.238e^-5	0.524	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	3009487	3R_3009487_SNP [dm3] 3R_7183765_SNP [dm6]	A	T	2.244e^-5	0.524	DOWNSTREAM CG10055 & 1 other INTERGENIC
3R	15212720	3R_15212720_SNP [dm3] 3R_19386998_SNP [dm6]	T	C	2.305e^-5	0.524	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
2L	17882202	2L_17882202_SNP [dm3] 2L_17882202_SNP [dm6]	T	C	2.347e^-5	0.524	INTERGENIC
3L	14843717	3L_14843717_INS [dm3] 3L_14850617_INS [dm6]	C	CGTATCGTATATCGTATCGT...	2.357e^-5	0.524	INTRON CG17839
2L	10184866	2L_10184866_SNP [dm3] 2L_10184866_SNP [dm6]	T	C	2.380e^-5	0.524	SYNONYMOUS_CODING Sur	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	2380273	2R_2380273_SNP [dm3] 2R_6492768_SNP [dm6]	C	T	2.386e^-5	0.524	INTERGENIC
2L	16428767	2L_16428767_SNP [dm3] 2L_16428767_SNP [dm6]	A	G	2.408e^-5	0.524	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12420656	2L_12420656_SNP [dm3] 2L_12420656_SNP [dm6]	G	A	2.422e^-5	0.524	INTRON vir-1
3R	26898335	3R_26898335_SNP [dm3] 3R_31072613_SNP [dm6]	C	T	2.423e^-5	0.524	INTRON Sox100B
X	15359250	X_15359250_SNP [dm3] X_15465217_SNP [dm6]	A	T	2.456e^-5	0.524	UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
3L	6026699	3L_6026699_SNP [dm3] 3L_6033599_SNP [dm6]	A	C	2.465e^-5	0.524	UTR_3_PRIME CG10477
3L	15592330	3L_15592330_SNP [dm3] 3L_15599230_SNP [dm6]	A	T	2.556e^-5	0.524	INTRON RhoGAP71E
X	6718761	X_6718761_SNP [dm3] X_6824728_SNP [dm6]	C	T	2.557e^-5	0.524	SYNONYMOUS_CODING nonC DOWNSTREAM Atx-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11879425	2R_11879425_SNP [dm3] 2R_15991920_SNP [dm6]	A	G	2.690e^-5	0.524	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	20078838	2L_20078838_SNP [dm3] 2L_20078838_SNP [dm6]	T	C	2.693e^-5	0.524	DOWNSTREAM fok INTRON neb	TF binding site mE1_TFBS_cad mE1_TFBS_zfh1
2L	13609773	2L_13609773_SNP [dm3] 2L_13609773_SNP [dm6]	T	C	2.725e^-5	0.524	UPSTREAM mir-2489 INTRON kuz
2L	13263621	2L_13263621_SNP [dm3] 2L_13263621_SNP [dm6]	C	G	2.739e^-5	0.524	INTRON CG44085
X	14351790	X_14351790_SNP [dm3] X_14457757_SNP [dm6]	A	C	2.740e^-5	0.524	INTRON dpr8
2L	6493301	2L_6493301_SNP [dm3] 2L_6493301_SNP [dm6]	C	T	2.768e^-5	0.524	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5577426	X_5577426_SNP [dm3] X_5683393_SNP [dm6]	T	C	2.772e^-5	0.524	NON_SYNONYMOUS_CODING CG42449 DOWNSTREAM Gr5a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10822100	3L_10822100_SNP [dm3] 3L_10829000_SNP [dm6]	C	T	2.785e^-5	0.524	INTERGENIC
3L	10606729	3L_10606729_SNP [dm3] 3L_10613629_SNP [dm6]	T	C	2.790e^-5	0.524	INTERGENIC
2R	12975912	2R_12975912_INS [dm3] 2R_17088407_INS [dm6]	A	ATCAAGT	2.806e^-5	0.524	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
2L	12377919	2L_12377919_DEL [dm3] 2L_12377919_DEL [dm6]	GGCTG	G	2.813e^-5	0.524	INTRON bru-2
2L	13609765	2L_13609765_SNP [dm3] 2L_13609765_SNP [dm6]	T	A	2.816e^-5	0.524	UPSTREAM mir-2489 INTRON kuz
2R	12975923	2R_12975923_DEL [dm3] 2R_17088418_DEL [dm6]	CAAATG	C	2.819e^-5	0.524	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
2R	14197125	2R_14197125_INS [dm3] 2R_18309620_INS [dm6]	A	ACA	2.878e^-5	0.524	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9938998	3R_9938998_SNP [dm3] 3R_14113276_SNP [dm6]	C	A	2.896e^-5	0.524	INTRON Kif19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11878463	2R_11878463_SNP [dm3] 2R_15990958_SNP [dm6]	G	A	2.919e^-5	0.524	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26898327	3R_26898327_SNP [dm3] 3R_31072605_SNP [dm6]	G	C	2.920e^-5	0.524	INTRON Sox100B
2L	12420611	2L_12420611_SNP [dm3] 2L_12420611_SNP [dm6]	G	A	2.932e^-5	0.524	INTRON vir-1
3L	2755774	3L_2755774_SNP [dm3] 3L_2755774_SNP [dm6]	A	C	2.943e^-5	0.524	INTRON Mrtf	TF binding site mE1_TFBS_inv
2R	11881115	2R_11881115_SNP [dm3] 2R_15993610_SNP [dm6]	C	A	2.964e^-5	0.524	UTR_3_PRIME CG8320 & 1 other DOWNSTREAM ATPCL
2L	5581389	2L_5581389_SNP [dm3] 2L_5581389_SNP [dm6]	G	C	3.066e^-5	0.537	UPSTREAM CG14011 INTERGENIC
2R	4600952	2R_4600952_SNP [dm3] 2R_8713447_SNP [dm6]	G	A	3.119e^-5	0.542	UTR_5_PRIME PGRP-SC1b UPSTREAM CG14743
2R	11877902	2R_11877902_SNP [dm3] 2R_15990397_SNP [dm6]	C	A	3.198e^-5	0.55	UPSTREAM Strn-Mlck DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9932656	2L_9932656_SNP [dm3] 2L_9932656_SNP [dm6]	T	C	3.272e^-5	0.552	SYNONYMOUS_CODING Cpr30F	TF binding site mE1_TFBS_chinmo
2L	12398022	2L_12398022_SNP [dm3] 2L_12398022_SNP [dm6]	A	G	3.321e^-5	0.552	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2L	12420676	2L_12420676_DEL [dm3] 2L_12420676_DEL [dm6]	ATATG	A	3.382e^-5	0.552	INTRON vir-1
3L	16205288	3L_16205288_SNP [dm3] 3L_16212188_SNP [dm6]	A	G	3.419e^-5	0.552	DOWNSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21347307	2L_21347307_SNP [dm3] 2L_21347307_SNP [dm6]	T	A	3.446e^-5	0.552	INTRON Tsp39D
3R	10432689	3R_10432689_SNP [dm3] 3R_14606967_SNP [dm6]	G	C	3.522e^-5	0.552	SYNONYMOUS_CODING stumps	TF binding site mE1_TFBS_HSA
2L	13395199	2L_13395199_SNP [dm3] 2L_13395199_SNP [dm6]	C	A	3.528e^-5	0.552	UPSTREAM RpL24 DOWNSTREAM CG16957 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14198005	2L_14198005_SNP [dm3] 2L_14198005_SNP [dm6]	C	A	3.582e^-5	0.552	UPSTREAM Dyrk2 INTRON Dyrk2
2L	17882211	2L_17882211_SNP [dm3] 2L_17882211_SNP [dm6]	C	T	3.590e^-5	0.552	INTERGENIC
2L	6093927	2L_6093927_SNP [dm3] 2L_6093927_SNP [dm6]	C	T	3.619e^-5	0.552	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5973315	3R_5973315_SNP [dm3] 3R_10147593_SNP [dm6]	A	G	3.686e^-5	0.552	INTRON Invadolysin
3L	14227628	3L_14227628_SNP [dm3] 3L_14234528_SNP [dm6]	C	T	3.707e^-5	0.552	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
2R	7574950	2R_7574950_SNP [dm3] 2R_11687445_SNP [dm6]	A	T	3.708e^-5	0.552	UTR_5_PRIME Buffy
2R	19500753	2R_19500753_SNP [dm3] 2R_23613230_SNP [dm6]	A	T	3.716e^-5	0.552	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
3R	25473781	3R_25473781_INS [dm3] 3R_29648059_INS [dm6]	A	AA	3.722e^-5	0.552	INTRON Dop1R2
3R	26932531	3R_26932531_SNP [dm3] 3R_31106809_SNP [dm6]	A	T	3.737e^-5	0.552	SYNONYMOUS_CODING CG11318
3R	8960745	3R_8960745_SNP [dm3] 3R_13135023_SNP [dm6]	T	C	3.774e^-5	0.552	INTRON timeout & 2 others
2R	12975930	2R_12975930_SNP [dm3] 2R_17088425_SNP [dm6]	A	T	3.781e^-5	0.552	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
3L	18870904	3L_18870904_SNP [dm3] 3L_18877804_SNP [dm6]	T	C	3.797e^-5	0.552	UTR_3_PRIME Ugt DOWNSTREAM CG3961
2R	2503038	2R_2503038_SNP [dm3] 2R_6615533_SNP [dm6]	T	C	3.837e^-5	0.552	SYNONYMOUS_CODING jing	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6011677	3L_6011677_SNP [dm3] 3L_6018577_SNP [dm6]	C	T	3.851e^-5	0.552	INTRON PVRAP
2L	5397552	2L_5397552_SNP [dm3] 2L_5397552_SNP [dm6]	C	T	3.858e^-5	0.552	INTERGENIC
X	12070506	X_12070506_SNP [dm3] X_12176473_SNP [dm6]	T	C	3.915e^-5	0.556	UTR_3_PRIME CG1924 INTRON Ten-a
2L	5372015	2L_5372015_SNP [dm3] 2L_5372015_SNP [dm6]	A	G	3.987e^-5	0.562	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12301680	3L_12301680_SNP [dm3] 3L_12308580_SNP [dm6]	T	A	4.043e^-5	0.562	INTERGENIC
2R	11879590	2R_11879590_SNP [dm3] 2R_15992085_SNP [dm6]	A	T	4.080e^-5	0.562	UPSTREAM CG8314 & 1 other INTRON Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	17501312	2R_17501312_SNP [dm3] 2R_21613807_SNP [dm6]	T	C	4.097e^-5	0.562	UPSTREAM CG15673 DOWNSTREAM CG18870 INTERGENIC
3R	18256612	3R_18256612_INS [dm3] 3R_22430890_INS [dm6]	T	TGTTTTCTTTGCCGT...	4.102e^-5	0.562	INTRON CG13847
X	10730211	X_10730211_SNP [dm3] X_10836178_SNP [dm6]	C	A	4.155e^-5	0.565	INTRON sbr	TF binding site mE1_TFBS_HSA
3R	781541	3R_781541_SNP [dm3] 3R_4955819_SNP [dm6]	G	T	4.281e^-5	0.573	UPSTREAM CG14661 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19968308	2R_19968308_DEL [dm3] 2R_24080785_DEL [dm6]	TGCAAGAAATCGGATT...	T	4.323e^-5	0.573	UPSTREAM CG13564 & 2 others INTERGENIC
3R	11145681	3R_11145681_DEL [dm3] 3R_15319959_DEL [dm6]	TT	T	4.327e^-5	0.573	UTR_5_PRIME CG6276 UPSTREAM CG44040 & 1 other	TF binding site mE1_TFBS_cad
2R	11883504	2R_11883504_SNP [dm3] 2R_15995999_SNP [dm6]	G	A	4.336e^-5	0.573	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13008073	3L_13008073_SNP [dm3] 3L_13014973_SNP [dm6]	A	G	4.496e^-5	0.576	SYNONYMOUS_CODING MICAL-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5336035	2L_5336035_SNP [dm3] 2L_5336035_SNP [dm6]	G	C	4.541e^-5	0.576	UTR_5_PRIME fusl INTRON fusl
2L	7179411	2L_7179411_SNP [dm3] 2L_7179411_SNP [dm6]	C	T	4.543e^-5	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12879949	2R_12879949_SNP [dm3] 2R_16992444_SNP [dm6]	A	T	4.574e^-5	0.576	INTRON Cbp53E
3R	20707162	3R_20707162_SNP [dm3] 3R_24881440_SNP [dm6]	C	A	4.634e^-5	0.576	UTR_3_PRIME CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
X	6928260	X_6928260_INS [dm3] X_7034227_INS [dm6]	A	AAGTAACACGCCCAA...	4.652e^-5	0.576	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10730639	X_10730639_SNP [dm3] X_10836606_SNP [dm6]	T	G	4.712e^-5	0.576	SYNONYMOUS_CODING sbr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12376223	2L_12376223_SNP [dm3] 2L_12376223_SNP [dm6]	C	G	4.765e^-5	0.576	INTRON bru-2
2L	12376227	2L_12376227_SNP [dm3] 2L_12376227_SNP [dm6]	A	T	4.768e^-5	0.576	INTRON bru-2
3R	20254870	3R_20254870_DEL [dm3] 3R_24429148_DEL [dm6]	AA	A	4.793e^-5	0.576	INTRON nAChRalpha1	TF binding site mE1_TFBS_chinmo
3L	14219854	3L_14219854_SNP [dm3] 3L_14226754_SNP [dm6]	A	G	4.794e^-5	0.576	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	7688763	3R_7688763_SNP [dm3] 3R_11863041_SNP [dm6]	T	C	4.796e^-5	0.576	INTRON CG6959	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21874769	2L_21874769_SNP [dm3] 2L_21874769_SNP [dm6]	G	C	4.845e^-5	0.576	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9879753	3R_9879753_SNP [dm3] 3R_14054031_SNP [dm6]	G	C	4.887e^-5	0.576	INTERGENIC
3L	12301648	3L_12301648_SNP [dm3] 3L_12308548_SNP [dm6]	G	A	4.893e^-5	0.576	INTERGENIC
3R	18054490	3R_18054490_SNP [dm3] 3R_22228768_SNP [dm6]	G	A	4.924e^-5	0.576	INTRON SKIP
3R	26883602	3R_26883602_SNP [dm3] 3R_31057880_SNP [dm6]	G	A	4.945e^-5	0.576	UTR_5_PRIME dco
2L	12371836	2L_12371836_SNP [dm3] 2L_12371836_SNP [dm6]	C	T	4.948e^-5	0.576	INTRON bru-2
3R	22732632	3R_22732632_SNP [dm3] 3R_26906910_SNP [dm6]	C	T	5.018e^-5	0.576	INTRON T48	regulatory region REDfly_CRMs
2L	14196772	2L_14196772_SNP [dm3] 2L_14196772_SNP [dm6]	A	T	5.032e^-5	0.576	INTRON Dyrk2
X	5860616	X_5860616_SNP [dm3] X_5966583_SNP [dm6]	G	A	5.044e^-5	0.576	SYNONYMOUS_CODING Grip	TF binding site BDTNP1_TFBS_dl
2L	5336321	2L_5336321_SNP [dm3] 2L_5336321_SNP [dm6]	C	G	5.064e^-5	0.576	UPSTREAM fusl INTRON fusl
2L	5336219	2L_5336219_SNP [dm3] 2L_5336219_SNP [dm6]	C	T	5.071e^-5	0.576	UPSTREAM fusl INTRON fusl
2L	7265892	2L_7265892_SNP [dm3] 2L_7265892_SNP [dm6]	C	T	5.120e^-5	0.578	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
3L	13009877	3L_13009877_SNP [dm3] 3L_13016777_SNP [dm6]	C	T	5.298e^-5	0.595	UTR_3_PRIME CG11267 DOWNSTREAM mRpL20
2L	14202885	2L_14202885_SNP [dm3] 2L_14202885_SNP [dm6]	G	C	5.528e^-5	0.617	INTRON Dyrk2
2R	11877189	2R_11877189_SNP [dm3] 2R_15989684_SNP [dm6]	G	A	5.577e^-5	0.619	UTR_3_PRIME CG8314 UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2618930	2L_2618930_SNP [dm3] 2L_2618930_SNP [dm6]	T	A	5.632e^-5	0.621	INTERGENIC
2R	15458291	2R_15458291_SNP [dm3] 2R_19570786_SNP [dm6]	T	G	5.674e^-5	0.622	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11638706	3R_11638706_SNP [dm3] 3R_15812984_SNP [dm6]	C	T	5.729e^-5	0.625	INTRON alpha-Man-IIb
2R	11879900	2R_11879900_SNP [dm3] 2R_15992395_SNP [dm6]	G	A	5.762e^-5	0.625	UPSTREAM CG8320 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16915659	3L_16915659_SNP [dm3] 3L_16922559_SNP [dm6]	G	A	5.838e^-5	0.629	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
2L	14196643	2L_14196643_SNP [dm3] 2L_14196643_SNP [dm6]	G	A	5.884e^-5	0.631	INTRON Dyrk2
3R	11726237	3R_11726237_SNP [dm3] 3R_15900515_SNP [dm6]	T	G	6.058e^-5	0.639	INTRON glob1
2L	14980196	2L_14980196_SNP [dm3] 2L_14980196_SNP [dm6]	G	A	6.076e^-5	0.639	INTRON mol
2L	16480336	2L_16480336_SNP [dm3] 2L_16480336_SNP [dm6]	G	C	6.094e^-5	0.639	INTRON dac
2R	16354065	2R_16354065_SNP [dm3] 2R_20466560_SNP [dm6]	G	A	6.122e^-5	0.639	INTRON CG12484
3L	6997112	3L_6997112_DEL [dm3] 3L_7004012_DEL [dm6]	AT	A	6.133e^-5	0.639	INTRON Mp
2R	6530121	2R_6530121_SNP [dm3] 2R_10642616_SNP [dm6]	G	A	6.213e^-5	0.641	SYNONYMOUS_CODING Git DOWNSTREAM CG11883	TF binding site mE1_TFBS_HSA
2R	17501475	2R_17501475_SNP [dm3] 2R_21613970_SNP [dm6]	T	C	6.216e^-5	0.641	UTR_3_PRIME CG18870 UPSTREAM CG15673 DOWNSTREAM CG18870
X	6717605	X_6717605_SNP [dm3] X_6823572_SNP [dm6]	G	A	6.368e^-5	0.653	SYNONYMOUS_CODING Atx-1 UPSTREAM nonC DOWNSTREAM CG4542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23316920	3R_23316920_SNP [dm3] 3R_27491198_SNP [dm6]	G	T	6.492e^-5	0.657	INTERGENIC
2L	14213642	2L_14213642_INS [dm3] 2L_14213642_INS [dm6]	T	TCGT	6.624e^-5	0.657	INTRON Dyrk2
2R	11881292	2R_11881292_SNP [dm3] 2R_15993787_SNP [dm6]	T	G	6.639e^-5	0.657	UTR_3_PRIME ATPCL DOWNSTREAM ATPCL & 1 other
3R	9651907	3R_9651907_SNP [dm3] 3R_13826185_SNP [dm6]	G	T	6.683e^-5	0.657	DOWNSTREAM Mst87F INTERGENIC
3L	1433464	3L_1433464_INS [dm3] 3L_1433464_INS [dm6]	T	TGT	6.694e^-5	0.657	DOWNSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8910546	3R_8910546_SNP [dm3] 3R_13084824_SNP [dm6]	C	G	6.730e^-5	0.657	UPSTREAM CR44967 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	21347309	2L_21347309_SNP [dm3] 2L_21347309_SNP [dm6]	A	T	6.742e^-5	0.657	INTRON Tsp39D
3L	14227939	3L_14227939_SNP [dm3] 3L_14234839_SNP [dm6]	T	C	6.742e^-5	0.657	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	16915733	3L_16915733_SNP [dm3] 3L_16922633_SNP [dm6]	T	G	6.743e^-5	0.657	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
X	6717491	X_6717491_SNP [dm3] X_6823458_SNP [dm6]	T	C	6.830e^-5	0.657	SYNONYMOUS_CODING Atx-1 DOWNSTREAM CG4542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17396240	2L_17396240_SNP [dm3] 2L_17396240_SNP [dm6]	G	A	6.831e^-5	0.657	INTRON CLIP-190
2L	17396241	2L_17396241_INS [dm3] 2L_17396241_INS [dm6]	A	ATAGGG	6.831e^-5	0.657	INTRON CLIP-190
2L	14213623	2L_14213623_SNP [dm3] 2L_14213623_SNP [dm6]	T	A	6.918e^-5	0.659	INTRON Dyrk2
2R	11877542	2R_11877542_SNP [dm3] 2R_15990037_SNP [dm6]	G	A	6.934e^-5	0.659	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26898332	3R_26898332_SNP [dm3] 3R_31072610_SNP [dm6]	C	A	6.959e^-5	0.659	INTRON Sox100B
3L	6997116	3L_6997116_SNP [dm3] 3L_7004016_SNP [dm6]	A	C	7.100e^-5	0.665	INTRON Mp
3L	10923226	3L_10923226_SNP [dm3] 3L_10930126_SNP [dm6]	C	T	7.115e^-5	0.665	INTERGENIC
2L	9272718	2L_9272718_SNP [dm3] 2L_9272718_SNP [dm6]	T	C	7.122e^-5	0.665	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	21829062	2L_21829062_SNP [dm3] 2L_21829062_SNP [dm6]	C	A	7.250e^-5	0.668	UTR_5_PRIME tsh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10948430	3L_10948430_INS [dm3] 3L_10955330_INS [dm6]	C	CC	7.269e^-5	0.668	INTERGENIC
3L	4407475	3L_4407475_SNP [dm3] 3L_4407475_SNP [dm6]	A	T	7.375e^-5	0.668	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	13194717	2R_13194717_SNP [dm3] 2R_17307212_SNP [dm6]	A	G	7.390e^-5	0.668	INTRON mbl EXON CR43661
3R	20601957	3R_20601957_INS [dm3] 3R_24776235_INS [dm6]	G	GT	7.405e^-5	0.668	INTRON CG42331	TF binding site mE1_TFBS_cad
2L	10184805	2L_10184805_SNP [dm3] 2L_10184805_SNP [dm6]	C	A	7.439e^-5	0.668	NON_SYNONYMOUS_CODING Sur	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	21995373	2L_21995373_SNP [dm3] 2L_21995373_SNP [dm6]	T	G	7.629e^-5	0.668	INTERGENIC
2R	11878247	2R_11878247_SNP [dm3] 2R_15990742_SNP [dm6]	C	G	7.640e^-5	0.668	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6026780	3L_6026780_SNP [dm3] 3L_6033680_SNP [dm6]	C	T	7.698e^-5	0.668	UTR_3_PRIME CG10477
3L	13678483	3L_13678483_SNP [dm3] 3L_13685383_SNP [dm6]	A	G	7.728e^-5	0.668	INTRON bru-3
3R	4307424	3R_4307424_SNP [dm3] 3R_8481702_SNP [dm6]	A	T	7.735e^-5	0.668	INTERGENIC
2R	5084248	2R_5084248_SNP [dm3] 2R_9196743_SNP [dm6]	T	A	7.743e^-5	0.668	INTRON unpg
2R	19565857	2R_19565857_SNP [dm3] 2R_23678334_SNP [dm6]	G	C	7.784e^-5	0.668	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7574880	2R_7574880_INS [dm3] 2R_11687375_INS [dm6]	T	TT	7.832e^-5	0.668	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs
2L	14197987	2L_14197987_SNP [dm3] 2L_14197987_SNP [dm6]	A	G	7.871e^-5	0.668	UPSTREAM Dyrk2 INTRON Dyrk2
X	6005104	X_6005104_DEL [dm3] X_6111071_DEL [dm6]	ACA	A	7.883e^-5	0.668	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
X	6928221	X_6928221_SNP [dm3] X_7034188_SNP [dm6]	G	A	7.896e^-5	0.668	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11875506	2R_11875506_SNP [dm3] 2R_15988001_SNP [dm6]	T	A	8.043e^-5	0.668	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3R	26759579	3R_26759579_SNP [dm3] 3R_30933857_SNP [dm6]	A	T	8.057e^-5	0.668	INTERGENIC
2R	11880471	2R_11880471_DEL [dm3] 2R_15992966_DEL [dm6]	AA	A	8.126e^-5	0.668	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10877200	3L_10877200_SNP [dm3] 3L_10884100_SNP [dm6]	A	G	8.147e^-5	0.668	DOWNSTREAM CG6404 & 1 other INTERGENIC
2L	20617742	2L_20617742_SNP [dm3] 2L_20617742_SNP [dm6]	C	T	8.149e^-5	0.668	DOWNSTREAM mir-288 INTRON CR44909
2L	8475116	2L_8475116_SNP [dm3] 2L_8475116_SNP [dm6]	T	A	8.175e^-5	0.668	INTRON d
2L	5592419	2L_5592419_SNP [dm3] 2L_5592419_SNP [dm6]	G	A	8.222e^-5	0.668	INTERGENIC
2L	12411220	2L_12411220_SNP [dm3] 2L_12411220_SNP [dm6]	C	T	8.259e^-5	0.668	INTRON vir-1
2R	18455949	2R_18455949_DEL [dm3] 2R_22568444_DEL [dm6]	ATTTGGATAATCAG...	A	8.288e^-5	0.668	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18455963	2R_18455963_INS [dm3] 2R_22568458_INS [dm6]	C	CCCGCT	8.288e^-5	0.668	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11879512	2R_11879512_SNP [dm3] 2R_15992007_SNP [dm6]	A	T	8.389e^-5	0.668	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	20038581	2L_20038581_SNP [dm3] 2L_20038581_SNP [dm6]	G	A	8.417e^-5	0.668	INTRON sNPF
3L	15972355	3L_15972355_SNP [dm3] 3L_15979255_SNP [dm6]	C	T	8.618e^-5	0.668	UPSTREAM CG17027 DOWNSTREAM CG17029 INTRON brm & 1 other
2L	12382792	2L_12382792_INS [dm3] 2L_12382792_INS [dm6]	C	CC	8.655e^-5	0.668	INTRON bru-2
X	6928232	X_6928232_SNP [dm3] X_7034199_SNP [dm6]	G	A	8.735e^-5	0.668	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4311316	2R_4311316_SNP [dm3] 2R_8423811_SNP [dm6]	C	A	8.744e^-5	0.668	INTRON CSN7
3R	859037	3R_859037_SNP [dm3] 3R_5033315_SNP [dm6]	T	C	8.780e^-5	0.668	INTERGENIC
3R	12412337	3R_12412337_SNP [dm3] 3R_16586615_SNP [dm6]	C	T	8.810e^-5	0.668	INTERGENIC
2R	11875516	2R_11875516_SNP [dm3] 2R_15988011_SNP [dm6]	A	C	8.863e^-5	0.668	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3L	6997121	3L_6997121_SNP [dm3] 3L_7004021_SNP [dm6]	A	G	8.890e^-5	0.668	INTRON Mp
2R	13754237	2R_13754237_SNP [dm3] 2R_17866732_SNP [dm6]	G	A	8.896e^-5	0.668	UTR_3_PRIME Mapmodulin UPSTREAM thr DOWNSTREAM Mapmodulin	TF binding site mE1_TFBS_sens
3R	11332669	3R_11332669_SNP [dm3] 3R_15506947_SNP [dm6]	C	T	8.923e^-5	0.668	DOWNSTREAM CG44014 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	13999112	2R_13999112_SNP [dm3] 2R_18111607_SNP [dm6]	G	C	8.934e^-5	0.668	INTERGENIC
2R	11875521	2R_11875521_SNP [dm3] 2R_15988016_SNP [dm6]	A	G	8.957e^-5	0.668	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	11875508	2R_11875508_MNP [dm3] 2R_15988003_MNP [dm6]	CCAC	GGTT	8.990e^-5	0.668	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2L	17396317	2L_17396317_SNP [dm3] 2L_17396317_SNP [dm6]	C	T	9.077e^-5	0.668	INTRON CLIP-190
3R	11275809	3R_11275809_SNP [dm3] 3R_15450087_SNP [dm6]	C	T	9.089e^-5	0.668	INTRON AdamTS-A
2R	18349099	2R_18349099_SNP [dm3] 2R_22461594_SNP [dm6]	G	T	9.225e^-5	0.668	INTRON CG10384
2L	14193341	2L_14193341_SNP [dm3] 2L_14193341_SNP [dm6]	C	A	9.258e^-5	0.668	INTRON Dyrk2
3R	13531466	3R_13531466_SNP [dm3] 3R_17705744_SNP [dm6]	G	A	9.268e^-5	0.668	INTRON osa
3R	23272464	3R_23272464_SNP [dm3] 3R_27446742_SNP [dm6]	C	A	9.278e^-5	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25438875	3R_25438875_SNP [dm3] 3R_29613153_SNP [dm6]	C	T	9.414e^-5	0.668	INTRON alph
2L	13395178	2L_13395178_SNP [dm3] 2L_13395178_SNP [dm6]	G	A	9.422e^-5	0.668	UPSTREAM RpL24 DOWNSTREAM CG16957 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10595209	2R_10595209_SNP [dm3] 2R_14707704_SNP [dm6]	A	C	9.457e^-5	0.668	INTRON mspo
2L	12399167	2L_12399167_SNP [dm3] 2L_12399167_SNP [dm6]	A	T	9.477e^-5	0.668	INTRON Pkd2
2R	13501257	2R_13501257_SNP [dm3] 2R_17613752_SNP [dm6]	T	C	9.481e^-5	0.668	INTRON CG10936
2R	13501262	2R_13501262_SNP [dm3] 2R_17613757_SNP [dm6]	T	C	9.481e^-5	0.668	INTRON CG10936
2L	5641156	2L_5641156_SNP [dm3] 2L_5641156_SNP [dm6]	A	T	9.493e^-5	0.668	UPSTREAM mir-961 & 3 others DOWNSTREAM mir-959 & 1 other INTRON CG31646
2L	15338426	2L_15338426_SNP [dm3] 2L_15338426_SNP [dm6]	A	T	9.515e^-5	0.668	INTERGENIC
3R	4152513	3R_4152513_SNP [dm3] 3R_8326791_SNP [dm6]	C	T	9.548e^-5	0.668	INTRON Poxm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14765074	3R_14765074_SNP [dm3] 3R_18939352_SNP [dm6]	A	T	9.586e^-5	0.668	INTRON CG42613
2L	13753467	2L_13753467_SNP [dm3] 2L_13753467_SNP [dm6]	C	A	9.590e^-5	0.668	INTRON CR44846 & 1 other EXON CR44846
3R	25166512	3R_25166512_SNP [dm3] 3R_29340790_SNP [dm6]	T	C	9.594e^-5	0.668	INTERGENIC
2R	13501260	2R_13501260_INS [dm3] 2R_17613755_INS [dm6]	T	TT	9.602e^-5	0.668	INTRON CG10936
3R	26933278	3R_26933278_SNP [dm3] 3R_31107556_SNP [dm6]	G	A	9.615e^-5	0.668	SYNONYMOUS_CODING CG11318
2R	18986219	2R_18986219_SNP [dm3] 2R_23098696_SNP [dm6]	C	A	9.647e^-5	0.668	INTERGENIC
2R	11875595	2R_11875595_SNP [dm3] 2R_15988090_SNP [dm6]	T	A	9.674e^-5	0.668	UPSTREAM Strn-Mlck DOWNSTREAM CR45021 INTRON Strn-Mlck
3R	8496816	3R_8496816_SNP [dm3] 3R_12671094_SNP [dm6]	C	A	9.674e^-5	0.668	SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11440299	3L_11440299_SNP [dm3] 3L_11447199_SNP [dm6]	C	G	9.708e^-5	0.668	DOWNSTREAM CG7557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10511166	3R_10511166_SNP [dm3] 3R_14685444_SNP [dm6]	G	A	9.720e^-5	0.668	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17341838	3L_17341838_SNP [dm3] 3L_17348738_SNP [dm6]	C	T	9.732e^-5	0.668	INTRON Mip
3L	15710517	3L_15710517_SNP [dm3] 3L_15717417_SNP [dm6]	T	C	9.803e^-5	0.668	SYNONYMOUS_CODING CG42571 UPSTREAM CG42570
2L	14199861	2L_14199861_SNP [dm3] 2L_14199861_SNP [dm6]	C	T	9.886e^-5	0.668	INTRON Dyrk2
2L	14199871	2L_14199871_SNP [dm3] 2L_14199871_SNP [dm6]	C	T	9.886e^-5	0.668	INTRON Dyrk2
3L	7809928	3L_7809928_SNP [dm3] 3L_7816828_SNP [dm6]	T	C	9.899e^-5	0.668	INTRON Pdp1
2R	10594754	2R_10594754_SNP [dm3] 2R_14707249_SNP [dm6]	A	C	9.962e^-5	0.668	INTRON mspo
X	21909380	X_21909380_SNP [dm3] X_22507544_SNP [dm6]	G	A	1.000e^-4	0.668	UTR_3_PRIME l_1_G0196
3R	12952326	3R_12952326_SNP [dm3] 3R_17126604_SNP [dm6]	C	T	1.005e^-4	0.668	SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
3R	10529969	3R_10529969_SNP [dm3] 3R_14704247_SNP [dm6]	A	G	1.009e^-4	0.668	INTRON kibra
3L	13010124	3L_13010124_SNP [dm3] 3L_13017024_SNP [dm6]	A	T	1.010e^-4	0.668	DOWNSTREAM mRpL20 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	2343846	2R_2343846_INS [dm3] 2R_6456341_INS [dm6]	T	TAGCGCCGCGTCTTCG...	1.014e^-4	0.668	INTERGENIC	transposable element FlyBase
2R	15065876	2R_15065876_SNP [dm3] 2R_19178371_SNP [dm6]	A	T	1.019e^-4	0.668	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11875504	2R_11875504_INS [dm3] 2R_15987999_INS [dm6]	A	AAACTGT	1.020e^-4	0.668	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	11875568	2R_11875568_SNP [dm3] 2R_15988063_SNP [dm6]	A	T	1.020e^-4	0.668	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2L	21764203	2L_21764203_SNP [dm3] 2L_21764203_SNP [dm6]	C	T	1.021e^-4	0.668	INTRON CG31612
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	1.023e^-4	0.668	UPSTREAM TrpA1 INTRON TrpA1
3R	5445892	3R_5445892_SNP [dm3] 3R_9620170_SNP [dm6]	G	A	1.027e^-4	0.668	INTRON CG8312
2L	16798609	2L_16798609_SNP [dm3] 2L_16798609_SNP [dm6]	A	C	1.028e^-4	0.668	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
3R	4909346	3R_4909346_SNP [dm3] 3R_9083624_SNP [dm6]	C	A	1.030e^-4	0.668	INTRON pum
2L	5946663	2L_5946663_SNP [dm3] 2L_5946663_SNP [dm6]	G	C	1.039e^-4	0.668	SYNONYMOUS_CODING Gpdh DOWNSTREAM CR44986
X	2155003	X_2155003_SNP [dm3] X_2260970_SNP [dm6]	G	T	1.039e^-4	0.668	SYNONYMOUS_CODING l_1_G0144	TF binding site mE1_TFBS_chinmo
2R	12110314	2R_12110314_SNP [dm3] 2R_16222809_SNP [dm6]	T	C	1.040e^-4	0.668	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	10867629	2L_10867629_SNP [dm3] 2L_10867629_SNP [dm6]	C	T	1.041e^-4	0.668	INTERGENIC
X	21226149	X_21226149_SNP [dm3] X_21355122_SNP [dm6]	C	G	1.048e^-4	0.668	NON_SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1838930	2L_1838930_SNP [dm3] 2L_1838930_SNP [dm6]	A	G	1.051e^-4	0.668	DOWNSTREAM CR44073 INTRON wry
2L	14199528	2L_14199528_SNP [dm3] 2L_14199528_SNP [dm6]	C	T	1.058e^-4	0.668	INTRON Dyrk2
X	19626008	X_19626008_SNP [dm3] X_19731975_SNP [dm6]	G	A	1.063e^-4	0.668	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10618810	2L_10618810_SNP [dm3] 2L_10618810_SNP [dm6]	T	A	1.066e^-4	0.668	INTRON Trim9
3L	13010217	3L_13010217_SNP [dm3] 3L_13017117_SNP [dm6]	C	T	1.068e^-4	0.668	DOWNSTREAM mRpL20 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12404950	2L_12404950_SNP [dm3] 2L_12404950_SNP [dm6]	G	A	1.069e^-4	0.668	UPSTREAM vir-1 INTRON vir-1
2L	20078541	2L_20078541_SNP [dm3] 2L_20078541_SNP [dm6]	G	C	1.071e^-4	0.668	DOWNSTREAM fok INTRON neb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	21271795	3L_21271795_SNP [dm3] 3L_21278695_SNP [dm6]	A	T	1.074e^-4	0.668	INTRON AcCoAS
X	6928249	X_6928249_SNP [dm3] X_7034216_SNP [dm6]	G	A	1.075e^-4	0.668	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	781534	3R_781534_SNP [dm3] 3R_4955812_SNP [dm6]	G	T	1.076e^-4	0.668	UPSTREAM CG14661 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4568068	X_4568068_SNP [dm3] X_4674035_SNP [dm6]	T	G	1.091e^-4	0.669	INTRON rap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13999199	2R_13999199_SNP [dm3] 2R_18111694_SNP [dm6]	A	T	1.096e^-4	0.669	INTERGENIC
3L	16915386	3L_16915386_DEL [dm3] 3L_16922286_DEL [dm6]	GAATG	G	1.096e^-4	0.669	UTR_3_PRIME Lmpt UPSTREAM CG13028
3R	25439983	3R_25439983_SNP [dm3] 3R_29614261_SNP [dm6]	T	C	1.099e^-4	0.669	INTRON alph
2L	1739922	2L_1739922_INS [dm3] 2L_1739922_INS [dm6]	A	ATTTTCTAATTTCAT...	1.100e^-4	0.669	INTRON CG17646
2L	14198127	2L_14198127_SNP [dm3] 2L_14198127_SNP [dm6]	G	A	1.102e^-4	0.669	UPSTREAM Dyrk2 INTRON Dyrk2
3L	6012754	3L_6012754_SNP [dm3] 3L_6019654_SNP [dm6]	C	T	1.104e^-4	0.669	SYNONYMOUS_CODING PVRAP
X	3603832	X_3603832_DEL [dm3] X_3709799_DEL [dm6]	GG	G	1.105e^-4	0.669	INTRON Rala
3R	779242	3R_779242_SNP [dm3] 3R_4953520_SNP [dm6]	A	C	1.115e^-4	0.672	UTR_3_PRIME CG14661 UPSTREAM UbcD6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	16428856	2L_16428856_SNP [dm3] 2L_16428856_SNP [dm6]	A	T	1.126e^-4	0.673	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23316898	3R_23316898_SNP [dm3] 3R_27491176_SNP [dm6]	G	T	1.128e^-4	0.673	INTERGENIC
2R	17016315	2R_17016315_SNP [dm3] 2R_21128810_SNP [dm6]	C	A	1.131e^-4	0.673	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5592421	2L_5592421_SNP [dm3] 2L_5592421_SNP [dm6]	T	A	1.132e^-4	0.673	INTERGENIC
2R	7574949	2R_7574949_SNP [dm3] 2R_11687444_SNP [dm6]	T	G	1.138e^-4	0.673	UTR_5_PRIME Buffy
2L	21759567	2L_21759567_SNP [dm3] 2L_21759567_SNP [dm6]	G	A	1.138e^-4	0.673	INTRON CG1416
3R	9364553	3R_9364553_SNP [dm3] 3R_13538831_SNP [dm6]	G	A	1.155e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6026747	3L_6026747_SNP [dm3] 3L_6033647_SNP [dm6]	G	A	1.161e^-4	0.68	UTR_3_PRIME CG10477
3R	5445878	3R_5445878_SNP [dm3] 3R_9620156_SNP [dm6]	C	T	1.161e^-4	0.68	INTRON CG8312
2L	14181430	2L_14181430_SNP [dm3] 2L_14181430_SNP [dm6]	A	T	1.169e^-4	0.682	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1437384	3L_1437384_SNP [dm3] 3L_1437384_SNP [dm6]	G	A	1.172e^-4	0.682	SYNONYMOUS_CODING SA-2 INTRON Ptp61F
3R	26694765	3R_26694765_SNP [dm3] 3R_30869043_SNP [dm6]	C	T	1.178e^-4	0.683	UTR_3_PRIME Cpr100A
2R	15103159	2R_15103159_SNP [dm3] 2R_19215654_SNP [dm6]	A	G	1.186e^-4	0.683	INTRON hppy
X	14351993	X_14351993_SNP [dm3] X_14457960_SNP [dm6]	T	C	1.187e^-4	0.683	INTRON dpr8
2R	14003381	2R_14003381_SNP [dm3] 2R_18115876_SNP [dm6]	C	G	1.188e^-4	0.683	INTERGENIC
3R	22668949	3R_22668949_SNP [dm3] 3R_26843227_SNP [dm6]	T	C	1.191e^-4	0.683	SYNONYMOUS_CODING Lerp DOWNSTREAM Tl
3R	8496750	3R_8496750_SNP [dm3] 3R_12671028_SNP [dm6]	A	G	1.201e^-4	0.686	SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7330872	2R_7330872_SNP [dm3] 2R_11443367_SNP [dm6]	G	A	1.206e^-4	0.687	INTRON qvr
3L	11440287	3L_11440287_SNP [dm3] 3L_11447187_SNP [dm6]	T	A	1.209e^-4	0.687	DOWNSTREAM CG7557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14082640	3L_14082640_SNP [dm3] 3L_14089540_SNP [dm6]	G	T	1.212e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5836789	2R_5836789_SNP [dm3] 2R_9949284_SNP [dm6]	A	G	1.225e^-4	0.691	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9942578	3R_9942578_SNP [dm3] 3R_14116856_SNP [dm6]	T	G	1.228e^-4	0.691	INTRON Kif19A
3L	13666569	3L_13666569_SNP [dm3] 3L_13673469_SNP [dm6]	G	A	1.237e^-4	0.691	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18595547	2R_18595547_SNP [dm3] 2R_22708042_SNP [dm6]	T	C	1.237e^-4	0.691	SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
3L	9693583	3L_9693583_SNP [dm3] 3L_9700483_SNP [dm6]	C	T	1.239e^-4	0.691	DOWNSTREAM CG6761 & 1 other INTERGENIC
3R	19021527	3R_19021527_SNP [dm3] 3R_23195805_SNP [dm6]	A	C	1.248e^-4	0.691	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	12659210	3L_12659210_SNP [dm3] 3L_12666110_SNP [dm6]	A	G	1.251e^-4	0.691	INTERGENIC
3R	15146438	3R_15146438_SNP [dm3] 3R_19320716_SNP [dm6]	C	A	1.252e^-4	0.691	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14856225	3R_14856225_SNP [dm3] 3R_19030503_SNP [dm6]	A	G	1.253e^-4	0.691	SYNONYMOUS_CODING Prp18 UPSTREAM CG6013 DOWNSTREAM P5cr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5215947	X_5215947_SNP [dm3] X_5321914_SNP [dm6]	A	G	1.264e^-4	0.691	SYNONYMOUS_CODING Rnp4F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	14589556	2R_14589556_SNP [dm3] 2R_18702051_SNP [dm6]	T	C	1.264e^-4	0.691	SYNONYMOUS_CODING Sik3 DOWNSTREAM Sik3 INTRON Sik3
2R	9374005	2R_9374005_SNP [dm3] 2R_13486500_SNP [dm6]	T	A	1.268e^-4	0.691	UTR_3_PRIME cid DOWNSTREAM bbc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6145963	3R_6145963_SNP [dm3] 3R_10320241_SNP [dm6]	G	A	1.274e^-4	0.691	SYNONYMOUS_CODING Bruce
3R	18726540	3R_18726540_SNP [dm3] 3R_22900818_SNP [dm6]	G	A	1.275e^-4	0.691	INTRON klg
3R	780477	3R_780477_SNP [dm3] 3R_4954755_SNP [dm6]	A	G	1.282e^-4	0.691	INTRON CG14661
3L	2557523	3L_2557523_SNP [dm3] 3L_2557523_SNP [dm6]	G	A	1.286e^-4	0.691	INTRON msn	TF binding site mE1_TFBS_sens
3L	6997111	3L_6997111_SNP [dm3] 3L_7004011_SNP [dm6]	T	G	1.287e^-4	0.691	INTRON Mp
X	5444666	X_5444666_DEL [dm3] X_5550633_DEL [dm6]	GTTATATGATTT...	C	1.288e^-4	0.691	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	20543675	2R_20543675_SNP [dm3] 2R_24656152_SNP [dm6]	G	C	1.294e^-4	0.691	INTERGENIC
3L	1435921	3L_1435921_SNP [dm3] 3L_1435921_SNP [dm6]	T	G	1.297e^-4	0.691	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14298861	3R_14298861_SNP [dm3] 3R_18473139_SNP [dm6]	A	C	1.299e^-4	0.691	INTRON fru
2L	8623138	2L_8623138_SNP [dm3] 2L_8623138_SNP [dm6]	A	T	1.305e^-4	0.691	INTRON Sema-1a
2R	11875636	2R_11875636_SNP [dm3] 2R_15988131_SNP [dm6]	A	T	1.312e^-4	0.691	UPSTREAM Strn-Mlck DOWNSTREAM CR45021 INTRON Strn-Mlck
2L	21763899	2L_21763899_SNP [dm3] 2L_21763899_SNP [dm6]	T	C	1.314e^-4	0.691	INTRON CG31612
X	6928223	X_6928223_SNP [dm3] X_7034190_SNP [dm6]	T	A	1.317e^-4	0.691	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5592388	2L_5592388_SNP [dm3] 2L_5592388_SNP [dm6]	A	C	1.323e^-4	0.691	INTERGENIC
3L	16916687	3L_16916687_SNP [dm3] 3L_16923587_SNP [dm6]	G	A	1.329e^-4	0.691	NON_SYNONYMOUS_CODING CG13028 DOWNSTREAM CG13023	TF binding site mE1_TFBS_HSA
3L	6878689	3L_6878689_SNP [dm3] 3L_6885589_SNP [dm6]	C	A	1.331e^-4	0.691	INTERGENIC
3L	8628099	3L_8628099_SNP [dm3] 3L_8634999_SNP [dm6]	T	C	1.331e^-4	0.691	SPLICE_SITE_REGION Zasp66 UPSTREAM Cdc6 INTRON Zasp66
3R	26591790	3R_26591790_INS [dm3] 3R_30766068_INS [dm6]	C	CGAC	1.333e^-4	0.691	UTR_5_PRIME zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	9935496	3R_9935496_SNP [dm3] 3R_14109774_SNP [dm6]	C	T	1.337e^-4	0.691	SYNONYMOUS_CODING Or88a INTRON CR44237
2L	14194953	2L_14194953_SNP [dm3] 2L_14194953_SNP [dm6]	C	T	1.346e^-4	0.691	INTRON Dyrk2
2R	9606350	2R_9606350_DEL [dm3] 2R_13718845_DEL [dm6]	CCCAACGGAGC...	C	1.346e^-4	0.691	INTRON fas
3L	7821926	3L_7821926_DEL [dm3] 3L_7828826_DEL [dm6]	GG	G	1.347e^-4	0.691	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11875541	2R_11875541_SNP [dm3] 2R_15988036_SNP [dm6]	A	G	1.348e^-4	0.691	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	18303786	2R_18303786_SNP [dm3] 2R_22416281_SNP [dm6]	G	C	1.357e^-4	0.692	SYNONYMOUS_CODING qkr58E-2 UPSTREAM qkr58E-1 EXON CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1556223	3L_1556223_SNP [dm3] 3L_1556223_SNP [dm6]	G	A	1.362e^-4	0.692	SPLICE_SITE_REGION CG12099 DOWNSTREAM Cct2 INTRON CG12099	TF binding site mE1_TFBS_cad
2L	17223172	2L_17223172_SNP [dm3] 2L_17223172_SNP [dm6]	T	G	1.368e^-4	0.692	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9692466	2L_9692466_SNP [dm3] 2L_9692466_SNP [dm6]	C	A	1.377e^-4	0.692	INTRON Pka-C1
2R	11875553	2R_11875553_SNP [dm3] 2R_15988048_SNP [dm6]	T	A	1.379e^-4	0.692	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3L	9785046	3L_9785046_SNP [dm3] 3L_9791946_SNP [dm6]	C	T	1.383e^-4	0.692	INTRON Zasp67
3L	14671652	3L_14671652_SNP [dm3] 3L_14678552_SNP [dm6]	G	A	1.386e^-4	0.692	UPSTREAM CG4914 INTRON ome
3L	13265689	3L_13265689_SNP [dm3] 3L_13272589_SNP [dm6]	C	T	1.389e^-4	0.692	INTRON caps
3R	4908626	3R_4908626_SNP [dm3] 3R_9082904_SNP [dm6]	C	T	1.391e^-4	0.692	INTRON pum
2R	14617724	2R_14617724_SNP [dm3] 2R_18730219_SNP [dm6]	G	A	1.394e^-4	0.692	SYNONYMOUS_CODING List INTRON Hs3st-A
3R	8511517	3R_8511517_SNP [dm3] 3R_12685795_SNP [dm6]	G	A	1.395e^-4	0.692	INTRON kar	TF binding site mE1_TFBS_cad
X	14351801	X_14351801_SNP [dm3] X_14457768_SNP [dm6]	A	G	1.402e^-4	0.692	INTRON dpr8
2L	10602124	2L_10602124_SNP [dm3] 2L_10602124_SNP [dm6]	T	C	1.404e^-4	0.692	INTRON Trim9
2L	1308489	2L_1308489_SNP [dm3] 2L_1308489_SNP [dm6]	T	A	1.406e^-4	0.692	INTERGENIC
3L	16915382	3L_16915382_SNP [dm3] 3L_16922282_SNP [dm6]	C	A	1.406e^-4	0.692	UTR_3_PRIME Lmpt UPSTREAM CG13028
2L	19623292	2L_19623292_DEL [dm3] 2L_19623292_DEL [dm6]	AA	A	1.414e^-4	0.692	INTRON Lar
3R	4284604	3R_4284604_SNP [dm3] 3R_8458882_SNP [dm6]	T	C	1.415e^-4	0.692	INTRON CG45263
3L	10614549	3L_10614549_SNP [dm3] 3L_10621449_SNP [dm6]	G	T	1.419e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	10999832	2L_10999832_SNP [dm3] 2L_10999832_SNP [dm6]	A	G	1.420e^-4	0.692	SYNONYMOUS_CODING aub
2R	11875522	2R_11875522_SNP [dm3] 2R_15988017_SNP [dm6]	T	A	1.424e^-4	0.692	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2R	11601910	2R_11601910_SNP [dm3] 2R_15714405_SNP [dm6]	A	T	1.427e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8208991	2R_8208991_SNP [dm3] 2R_12321486_SNP [dm6]	T	C	1.436e^-4	0.694	SYNONYMOUS_CODING CG13163 UPSTREAM CR44316	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15442558	2R_15442558_SNP [dm3] 2R_19555053_SNP [dm6]	A	G	1.442e^-4	0.695	INTRON sm
2R	7861808	2R_7861808_SNP [dm3] 2R_11974303_SNP [dm6]	T	C	1.446e^-4	0.695	SYNONYMOUS_CODING CG8290 INTRON CG8290
X	2155219	X_2155219_SNP [dm3] X_2261186_SNP [dm6]	A	G	1.461e^-4	0.697	SYNONYMOUS_CODING l_1_G0144	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14197428	2L_14197428_SNP [dm3] 2L_14197428_SNP [dm6]	A	G	1.463e^-4	0.697	SYNONYMOUS_CODING Dyrk2 INTRON Dyrk2
3R	1255775	3R_1255775_SNP [dm3] 3R_5430053_SNP [dm6]	A	G	1.464e^-4	0.697	INTRON CG14669
2R	9380712	2R_9380712_SNP [dm3] 2R_13493207_SNP [dm6]	C	G	1.468e^-4	0.697	INTRON bbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	616350	3L_616350_DEL [dm3] 3L_616350_DEL [dm6]	TT	T	1.472e^-4	0.697	EXON CR42719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17405130	2L_17405130_SNP [dm3] 2L_17405130_SNP [dm6]	T	C	1.481e^-4	0.697	DOWNSTREAM CLIP-190 INTRON CLIP-190
2R	13501290	2R_13501290_SNP [dm3] 2R_17613785_SNP [dm6]	C	A	1.485e^-4	0.697	INTRON CG10936
2L	21818955	2L_21818955_SNP [dm3] 2L_21818955_SNP [dm6]	C	A	1.488e^-4	0.697	UPSTREAM CR44786 INTERGENIC
2L	21819186	2L_21819186_SNP [dm3] 2L_21819186_SNP [dm6]	T	A	1.488e^-4	0.697	UPSTREAM CR44786 INTERGENIC
3R	9942607	3R_9942607_SNP [dm3] 3R_14116885_SNP [dm6]	A	G	1.489e^-4	0.697	INTRON Kif19A
2L	1709659	2L_1709659_SNP [dm3] 2L_1709659_SNP [dm6]	C	T	1.493e^-4	0.697	SYNONYMOUS_CODING CG17660 UPSTREAM mRpL48 DOWNSTREAM CR44976	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	12398016	2L_12398016_SNP [dm3] 2L_12398016_SNP [dm6]	C	A	1.494e^-4	0.697	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2R	8214241	2R_8214241_SNP [dm3] 2R_12326736_SNP [dm6]	G	C	1.498e^-4	0.697	SYNONYMOUS_CODING garz UPSTREAM CG8841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10226169	3L_10226169_SNP [dm3] 3L_10233069_SNP [dm6]	T	C	1.504e^-4	0.698	INTERGENIC
X	17771191	X_17771191_SNP [dm3] X_17877158_SNP [dm6]	A	T	1.514e^-4	0.699	INTRON mnb	TF binding site BDTNP1_TFBS_twi
2R	11873482	2R_11873482_SNP [dm3] 2R_15985977_SNP [dm6]	C	A	1.518e^-4	0.699	UTR_5_PRIME Strn-Mlck INTRON Strn-Mlck
2R	4704062	2R_4704062_SNP [dm3] 2R_8816557_SNP [dm6]	G	A	1.530e^-4	0.699	INTRON sns
2L	3987703	2L_3987703_SNP [dm3] 2L_3987703_SNP [dm6]	A	T	1.533e^-4	0.699	INTRON fred
2L	16689596	2L_16689596_SNP [dm3] 2L_16689596_SNP [dm6]	C	T	1.535e^-4	0.699	INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6026734	3L_6026734_SNP [dm3] 3L_6033634_SNP [dm6]	C	T	1.537e^-4	0.699	UTR_3_PRIME CG10477
3L	11440249	3L_11440249_SNP [dm3] 3L_11447149_SNP [dm6]	G	T	1.546e^-4	0.699	DOWNSTREAM CG7557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5026907	2L_5026907_SNP [dm3] 2L_5026907_SNP [dm6]	C	G	1.549e^-4	0.699	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	13961332	3R_13961332_SNP [dm3] 3R_18135610_SNP [dm6]	G	T	1.551e^-4	0.699	DOWNSTREAM sr INTERGENIC
X	10732091	X_10732091_SNP [dm3] X_10838058_SNP [dm6]	G	A	1.551e^-4	0.699	INTRON sbr
2L	7156048	2L_7156048_SNP [dm3] 2L_7156048_SNP [dm6]	G	A	1.551e^-4	0.699	SYNONYMOUS_CODING Pvf3	TF binding site mE1_TFBS_sens
3R	4301876	3R_4301876_SNP [dm3] 3R_8476154_SNP [dm6]	A	G	1.561e^-4	0.699	INTRON CG45263	TF binding site BDTNP1_TFBS_twi
2L	4312264	2L_4312264_SNP [dm3] 2L_4312264_SNP [dm6]	A	G	1.563e^-4	0.699	INTRON tutl
2L	12260820	2L_12260820_SNP [dm3] 2L_12260820_SNP [dm6]	A	T	1.568e^-4	0.699	INTRON aret
3L	8626698	3L_8626698_SNP [dm3] 3L_8633598_SNP [dm6]	C	G	1.572e^-4	0.699	NON_SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6717688	X_6717688_SNP [dm3] X_6823655_SNP [dm6]	G	C	1.574e^-4	0.699	UPSTREAM nonC DOWNSTREAM CG4542 INTRON Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18137661	3L_18137661_SNP [dm3] 3L_18144561_SNP [dm6]	T	C	1.577e^-4	0.699	INTRON gk
2L	15472413	2L_15472413_SNP [dm3] 2L_15472413_SNP [dm6]	C	T	1.578e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2557520	3L_2557520_SNP [dm3] 3L_2557520_SNP [dm6]	A	T	1.579e^-4	0.699	INTRON msn	TF binding site mE1_TFBS_sens
3L	1433452	3L_1433452_SNP [dm3] 3L_1433452_SNP [dm6]	T	A	1.580e^-4	0.699	DOWNSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11875524	2R_11875524_SNP [dm3] 2R_15988019_SNP [dm6]	T	G	1.584e^-4	0.699	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
2L	12420643	2L_12420643_SNP [dm3] 2L_12420643_SNP [dm6]	A	C	1.595e^-4	0.702	INTRON vir-1
2R	18034752	2R_18034752_SNP [dm3] 2R_22147247_SNP [dm6]	C	A	1.603e^-4	0.703	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1308567	2L_1308567_SNP [dm3] 2L_1308567_SNP [dm6]	A	T	1.605e^-4	0.703	INTERGENIC
2R	2446436	2R_2446436_SNP [dm3] 2R_6558931_SNP [dm6]	C	T	1.610e^-4	0.704	INTRON jing
3L	11165069	3L_11165069_SNP [dm3] 3L_11171969_SNP [dm6]	A	G	1.615e^-4	0.705	SYNONYMOUS_CODING CG7616	TF binding site mE1_TFBS_cad
2R	12879948	2R_12879948_SNP [dm3] 2R_16992443_SNP [dm6]	T	A	1.633e^-4	0.708	INTRON Cbp53E
X	19951445	X_19951445_SNP [dm3] X_20057412_SNP [dm6]	C	A	1.636e^-4	0.708	INTRON Dop2R
2L	22249105	2L_22249105_DEL [dm3] 2L_22249105_DEL [dm6]	AGTTTCA	G	1.641e^-4	0.708	UPSTREAM Tif-IA INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18900128	X_18900128_SNP [dm3] X_19006095_SNP [dm6]	C	T	1.642e^-4	0.708	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14196881	2L_14196881_SNP [dm3] 2L_14196881_SNP [dm6]	A	G	1.650e^-4	0.708	INTRON Dyrk2
2L	14196943	2L_14196943_SNP [dm3] 2L_14196943_SNP [dm6]	C	G	1.650e^-4	0.708	SYNONYMOUS_CODING Dyrk2
3R	14298796	3R_14298796_SNP [dm3] 3R_18473074_SNP [dm6]	T	G	1.653e^-4	0.708	INTRON fru
2L	14923092	2L_14923092_SNP [dm3] 2L_14923092_SNP [dm6]	G	A	1.656e^-4	0.708	INTRON CG42313
2R	10773840	2R_10773840_SNP [dm3] 2R_14886335_SNP [dm6]	C	A	1.656e^-4	0.708	SYNONYMOUS_CODING Cyp6a21 DOWNSTREAM Cyp6a8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23335935	3R_23335935_SNP [dm3] 3R_27510213_SNP [dm6]	A	G	1.668e^-4	0.711	INTERGENIC
2L	21740504	2L_21740504_SNP [dm3] 2L_21740504_SNP [dm6]	C	A	1.673e^-4	0.711	UTR_3_PRIME step DOWNSTREAM step
3R	22196073	3R_22196073_SNP [dm3] 3R_26370351_SNP [dm6]	T	C	1.679e^-4	0.712	INTERGENIC
3R	25799572	3R_25799572_SNP [dm3] 3R_29973850_SNP [dm6]	C	T	1.691e^-4	0.716	INTERGENIC
2L	7065643	2L_7065643_SNP [dm3] 2L_7065643_SNP [dm6]	C	T	1.694e^-4	0.716	SYNONYMOUS_CODING Nuf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	2809068	2R_2809068_SNP [dm3] 2R_6921563_SNP [dm6]	T	A	1.703e^-4	0.716	UTR_3_PRIME CG30158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8178280	2L_8178280_SNP [dm3] 2L_8178280_SNP [dm6]	G	A	1.708e^-4	0.716	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12495025	3R_12495025_SNP [dm3] 3R_16669303_SNP [dm6]	A	G	1.708e^-4	0.716	INTRON Ubx
3L	14227918	3L_14227918_SNP [dm3] 3L_14234818_SNP [dm6]	C	G	1.715e^-4	0.716	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	17633821	2L_17633821_INS [dm3] 2L_17633821_INS [dm6]	C	AA	1.721e^-4	0.716	INTERGENIC
3L	14082660	3L_14082660_SNP [dm3] 3L_14089560_SNP [dm6]	A	T	1.724e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13563441	3R_13563441_SNP [dm3] 3R_17737719_SNP [dm6]	A	G	1.725e^-4	0.716	INTRON TyrRII
3R	4152608	3R_4152608_SNP [dm3] 3R_8326886_SNP [dm6]	G	T	1.727e^-4	0.716	INTRON Poxm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14227966	3L_14227966_DEL [dm3] 3L_14234866_DEL [dm6]	AAGTGT	A	1.729e^-4	0.716	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5041983	2L_5041983_SNP [dm3] 2L_5041983_SNP [dm6]	T	A	1.739e^-4	0.718	INTRON CG31650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10516964	3R_10516964_SNP [dm3] 3R_14691242_SNP [dm6]	T	A	1.744e^-4	0.719	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2R	15072453	2R_15072453_SNP [dm3] 2R_19184948_SNP [dm6]	C	T	1.750e^-4	0.719	INTRON hppy
2L	11354648	2L_11354648_SNP [dm3] 2L_11354648_SNP [dm6]	G	A	1.752e^-4	0.719	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
X	21190346	X_21190346_SNP [dm3] X_21319319_SNP [dm6]	G	A	1.770e^-4	0.725	UPSTREAM CG33713 & 1 other DOWNSTREAM Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12420661	2L_12420661_SNP [dm3] 2L_12420661_SNP [dm6]	T	C	1.794e^-4	0.73	INTRON vir-1
2L	1739918	2L_1739918_SNP [dm3] 2L_1739918_SNP [dm6]	A	T	1.800e^-4	0.73	INTRON CG17646
3L	5135458	3L_5135458_SNP [dm3] 3L_5142358_SNP [dm6]	C	T	1.802e^-4	0.73	SYNONYMOUS_CODING CG4623 UPSTREAM CG10672
3R	23139556	3R_23139556_SNP [dm3] 3R_27313834_SNP [dm6]	T	C	1.805e^-4	0.73	SYNONYMOUS_CODING CG3339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10570073	2R_10570073_SNP [dm3] 2R_14682568_SNP [dm6]	A	T	1.806e^-4	0.73	INTRON mspo
2L	21301298	2L_21301298_SNP [dm3] 2L_21301298_SNP [dm6]	C	A	1.807e^-4	0.73	INTRON Mio
2L	16428852	2L_16428852_SNP [dm3] 2L_16428852_SNP [dm6]	A	G	1.810e^-4	0.73	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4651582	X_4651582_SNP [dm3] X_4757549_SNP [dm6]	C	G	1.813e^-4	0.73	INTERGENIC
3R	3946024	3R_3946024_SNP [dm3] 3R_8120302_SNP [dm6]	G	A	1.820e^-4	0.73	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4307438	3R_4307438_SNP [dm3] 3R_8481716_SNP [dm6]	G	A	1.821e^-4	0.73	INTERGENIC
3R	21378977	3R_21378977_SNP [dm3] 3R_25553255_SNP [dm6]	C	A	1.838e^-4	0.731	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5592489	2L_5592489_SNP [dm3] 2L_5592489_SNP [dm6]	C	G	1.839e^-4	0.731	INTERGENIC
2R	17501493	2R_17501493_SNP [dm3] 2R_21613988_SNP [dm6]	T	G	1.849e^-4	0.731	UTR_3_PRIME CG18870 UPSTREAM CG15673 DOWNSTREAM CG18870
2L	1308465	2L_1308465_INS [dm3] 2L_1308465_INS [dm6]	T	TA	1.862e^-4	0.731	INTERGENIC
2R	2411767	2R_2411767_SNP [dm3] 2R_6524262_SNP [dm6]	A	G	1.863e^-4	0.731	INTRON jing	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10551256	2L_10551256_SNP [dm3] 2L_10551256_SNP [dm6]	G	C	1.864e^-4	0.731	INTRON Trim9
2R	2688709	2R_2688709_SNP [dm3] 2R_6801204_SNP [dm6]	T	G	1.866e^-4	0.731	INTERGENIC
3L	23833947	3L_23833947_SNP [dm3] 3L_23840847_SNP [dm6]	A	T	1.867e^-4	0.731	INTRON CG40470
3R	23367113	3R_23367113_SNP [dm3] 3R_27541391_SNP [dm6]	A	G	1.871e^-4	0.731	INTERGENIC
2R	11874423	2R_11874423_SNP [dm3] 2R_15986918_SNP [dm6]	A	G	1.875e^-4	0.731	UPSTREAM CR45021 INTRON Strn-Mlck
3R	22668619	3R_22668619_SNP [dm3] 3R_26842897_SNP [dm6]	T	C	1.881e^-4	0.731	UTR_3_PRIME Lerp DOWNSTREAM Tl
3R	10511893	3R_10511893_SNP [dm3] 3R_14686171_SNP [dm6]	G	T	1.882e^-4	0.731	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13999220	2R_13999220_SNP [dm3] 2R_18111715_SNP [dm6]	C	T	1.882e^-4	0.731	INTERGENIC
3R	2059740	3R_2059740_SNP [dm3] 3R_6234018_SNP [dm6]	C	T	1.885e^-4	0.731	UPSTREAM Osi6 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6717894	X_6717894_SNP [dm3] X_6823861_SNP [dm6]	C	T	1.889e^-4	0.731	NON_SYNONYMOUS_CODING Atx-1 UPSTREAM nonC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11875442	2R_11875442_SNP [dm3] 2R_15987937_SNP [dm6]	G	A	1.890e^-4	0.731	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3R	25310870	3R_25310870_SNP [dm3] 3R_29485148_SNP [dm6]	A	T	1.891e^-4	0.731	UTR_3_PRIME Ptp99A & 1 other DOWNSTREAM Ptp99A
2R	13998082	2R_13998082_SNP [dm3] 2R_18110577_SNP [dm6]	C	T	1.903e^-4	0.735	DOWNSTREAM CG34196 INTERGENIC
3L	8866817	3L_8866817_SNP [dm3] 3L_8873717_SNP [dm6]	A	G	1.914e^-4	0.736	INTRON dally
2R	2065314	2R_2065314_SNP [dm3] 2R_6177809_SNP [dm6]	C	A	1.930e^-4	0.736	DOWNSTREAM tRNA:R2:42Aa INTERGENIC	regulatory region REDfly_CRMs
3R	20913303	3R_20913303_SNP [dm3] 3R_25087581_SNP [dm6]	T	G	1.931e^-4	0.736	INTERGENIC	transposable element FlyBase
X	8552380	X_8552380_SNP [dm3] X_8658347_SNP [dm6]	C	A	1.936e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14082566	3L_14082566_SNP [dm3] 3L_14089466_SNP [dm6]	G	T	1.940e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1739916	2L_1739916_SNP [dm3] 2L_1739916_SNP [dm6]	G	A	1.947e^-4	0.736	INTRON CG17646
2R	10415579	2R_10415579_SNP [dm3] 2R_14528074_SNP [dm6]	G	A	1.956e^-4	0.736	INTRON ttv
2R	2689271	2R_2689271_SNP [dm3] 2R_6801766_SNP [dm6]	G	C	1.956e^-4	0.736	INTERGENIC
3L	8624955	3L_8624955_SNP [dm3] 3L_8631855_SNP [dm6]	C	A	1.957e^-4	0.736	UTR_3_PRIME Cdc6 INTRON Zasp66
2L	13687233	2L_13687233_SNP [dm3] 2L_13687233_SNP [dm6]	C	T	1.960e^-4	0.736	INTRON CG31814
2R	14060495	2R_14060495_SNP [dm3] 2R_18172990_SNP [dm6]	T	G	1.960e^-4	0.736	UPSTREAM CR45315 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7875430	3R_7875430_SNP [dm3] 3R_12049708_SNP [dm6]	G	A	1.974e^-4	0.736	UPSTREAM CG14739 INTERGENIC
2R	5387846	2R_5387846_SNP [dm3] 2R_9500341_SNP [dm6]	G	T	1.984e^-4	0.736	INTRON Wnt2
2L	12261152	2L_12261152_SNP [dm3] 2L_12261152_SNP [dm6]	A	T	1.990e^-4	0.736	INTRON aret
3R	16911319	3R_16911319_SNP [dm3] 3R_21085597_SNP [dm6]	A	G	1.999e^-4	0.736	NON_SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad
3R	13563442	3R_13563442_SNP [dm3] 3R_17737720_SNP [dm6]	C	T	2.002e^-4	0.736	INTRON TyrRII
2R	17003015	2R_17003015_SNP [dm3] 2R_21115510_SNP [dm6]	G	A	2.015e^-4	0.736	INTRON ktub
2R	4562636	2R_4562636_SNP [dm3] 2R_8675131_SNP [dm6]	C	T	2.025e^-4	0.736	UPSTREAM Acsl INTRON Acsl
2L	12371711	2L_12371711_INS [dm3] 2L_12371711_INS [dm6]	T	TT	2.038e^-4	0.736	INTRON bru-2
2L	9272070	2L_9272070_SNP [dm3] 2L_9272070_SNP [dm6]	G	C	2.039e^-4	0.736	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2R	14059909	2R_14059909_SNP [dm3] 2R_18172404_SNP [dm6]	A	G	2.042e^-4	0.736	UPSTREAM Dgp-1 & 1 other INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16573777	2R_16573777_SNP [dm3] 2R_20686272_SNP [dm6]	T	G	2.044e^-4	0.736	SYNONYMOUS_CODING Gr57a
3R	14299976	3R_14299976_SNP [dm3] 3R_18474254_SNP [dm6]	T	A	2.046e^-4	0.736	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10538761	2L_10538761_SNP [dm3] 2L_10538761_SNP [dm6]	C	G	2.049e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16573867	2R_16573867_SNP [dm3] 2R_20686362_SNP [dm6]	A	T	2.064e^-4	0.736	SYNONYMOUS_CODING Gr57a
3L	20539726	3L_20539726_SNP [dm3] 3L_20546626_SNP [dm6]	G	T	2.067e^-4	0.736	INTERGENIC
3R	22408921	3R_22408921_SNP [dm3] 3R_26583199_SNP [dm6]	C	T	2.079e^-4	0.736	UTR_3_PRIME scrib INTRON scrib
X	19624870	X_19624870_SNP [dm3] X_19730837_SNP [dm6]	A	G	2.079e^-4	0.736	UPSTREAM AP-1-2beta DOWNSTREAM CG12531 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	18330144	X_18330144_SNP [dm3] X_18436111_SNP [dm6]	C	T	2.080e^-4	0.736	NON_SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2L	11354609	2L_11354609_DEL [dm3] 2L_11354609_DEL [dm6]	GCAACA	G	2.091e^-4	0.736	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	11354619	2L_11354619_SNP [dm3] 2L_11354619_SNP [dm6]	A	T	2.091e^-4	0.736	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	11354642	2L_11354642_DEL [dm3] 2L_11354642_DEL [dm6]	AA	T	2.091e^-4	0.736	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	11354663	2L_11354663_SNP [dm3] 2L_11354663_SNP [dm6]	A	G	2.091e^-4	0.736	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2R	9374968	2R_9374968_SNP [dm3] 2R_13487463_SNP [dm6]	G	T	2.092e^-4	0.736	UTR_3_PRIME bbc DOWNSTREAM cid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9887343	2L_9887343_SNP [dm3] 2L_9887343_SNP [dm6]	T	A	2.094e^-4	0.736	UPSTREAM FKBP59 EXON CR44701	TF binding site mE1_TFBS_bab1
2L	16618189	2L_16618189_SNP [dm3] 2L_16618189_SNP [dm6]	T	G	2.097e^-4	0.736	INTRON CG42389
2L	16798339	2L_16798339_SNP [dm3] 2L_16798339_SNP [dm6]	G	C	2.102e^-4	0.736	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
X	14516456	X_14516456_SNP [dm3] X_14622423_SNP [dm6]	G	C	2.103e^-4	0.736	INTRON NetA
X	14516463	X_14516463_SNP [dm3] X_14622430_SNP [dm6]	C	T	2.103e^-4	0.736	INTRON NetA
3L	18559238	3L_18559238_SNP [dm3] 3L_18566138_SNP [dm6]	T	G	2.110e^-4	0.736	INTRON AstC-R1
3R	1255720	3R_1255720_SNP [dm3] 3R_5429998_SNP [dm6]	A	T	2.111e^-4	0.736	INTRON CG14669
2L	12351399	2L_12351399_SNP [dm3] 2L_12351399_SNP [dm6]	C	T	2.120e^-4	0.736	INTRON bru-2
2L	12351421	2L_12351421_SNP [dm3] 2L_12351421_SNP [dm6]	T	C	2.120e^-4	0.736	INTRON bru-2
2L	1739857	2L_1739857_SNP [dm3] 2L_1739857_SNP [dm6]	C	A	2.123e^-4	0.736	INTRON CG17646
X	15359229	X_15359229_SNP [dm3] X_15465196_SNP [dm6]	T	A	2.125e^-4	0.736	UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
2R	13719709	2R_13719709_INS [dm3] 2R_17832204_INS [dm6]	A	AA	2.127e^-4	0.736	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6716854	X_6716854_SNP [dm3] X_6822821_SNP [dm6]	G	A	2.130e^-4	0.736	UTR_3_PRIME CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6733506	2L_6733506_SNP [dm3] 2L_6733506_SNP [dm6]	C	T	2.134e^-4	0.736	SYNONYMOUS_CODING TTLL3B DOWNSTREAM Liprin-alpha	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	5946955	2L_5946955_SNP [dm3] 2L_5946955_SNP [dm6]	G	A	2.135e^-4	0.736	DOWNSTREAM CR44986 INTRON Gpdh
2L	4325197	2L_4325197_SNP [dm3] 2L_4325197_SNP [dm6]	G	A	2.138e^-4	0.736	INTRON CG16857
2L	1308558	2L_1308558_SNP [dm3] 2L_1308558_SNP [dm6]	T	A	2.139e^-4	0.736	INTERGENIC
X	19623823	X_19623823_SNP [dm3] X_19729790_SNP [dm6]	T	C	2.141e^-4	0.736	UTR_3_PRIME CG12531
3L	16203613	3L_16203613_SNP [dm3] 3L_16210513_SNP [dm6]	A	T	2.143e^-4	0.736	INTERGENIC
3L	16203618	3L_16203618_SNP [dm3] 3L_16210518_SNP [dm6]	A	G	2.143e^-4	0.736	INTERGENIC
2L	10458113	2L_10458113_SNP [dm3] 2L_10458113_SNP [dm6]	T	C	2.151e^-4	0.736	UPSTREAM CG5322 INTRON LM408	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11354608	2L_11354608_SNP [dm3] 2L_11354608_SNP [dm6]	A	T	2.151e^-4	0.736	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2R	15038371	2R_15038371_SNP [dm3] 2R_19150866_SNP [dm6]	A	T	2.153e^-4	0.736	INTRON ena	TF binding site mE1_TFBS_Trl
3R	14300184	3R_14300184_SNP [dm3] 3R_18474462_SNP [dm6]	C	G	2.158e^-4	0.736	INTRON fru	TF binding site BDTNP1_TFBS_dl
2L	1474024	2L_1474024_SNP [dm3] 2L_1474024_SNP [dm6]	T	C	2.166e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11878735	2R_11878735_SNP [dm3] 2R_15991230_SNP [dm6]	C	G	2.170e^-4	0.736	UTR_5_PRIME CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	8949175	X_8949175_SNP [dm3] X_9055142_SNP [dm6]	A	G	2.170e^-4	0.736	SYNONYMOUS_CODING CG15365 DOWNSTREAM CG42388	TF binding site mE1_TFBS_chinmo
X	5862674	X_5862674_SNP [dm3] X_5968641_SNP [dm6]	C	A	2.171e^-4	0.736	INTRON Grip
3R	8869789	3R_8869789_INS [dm3] 3R_13044067_INS [dm6]	A	AATA	2.175e^-4	0.736	UTR_3_PRIME CG11670 UPSTREAM CG45122 & 1 other
3L	14082704	3L_14082704_SNP [dm3] 3L_14089604_SNP [dm6]	G	C	2.177e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1334800	3L_1334800_SNP [dm3] 3L_1334800_SNP [dm6]	T	G	2.178e^-4	0.736	UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	21633340	3L_21633340_SNP [dm3] 3L_21640240_SNP [dm6]	C	G	2.181e^-4	0.736	SYNONYMOUS_CODING CG32445 UPSTREAM Atox1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13250504	2L_13250504_SNP [dm3] 2L_13250504_SNP [dm6]	T	C	2.186e^-4	0.736	DOWNSTREAM CG16820 INTERGENIC
2L	12900449	2L_12900449_SNP [dm3] 2L_12900449_SNP [dm6]	T	A	2.186e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26693293	3R_26693293_SNP [dm3] 3R_30867571_SNP [dm6]	C	A	2.193e^-4	0.736	UTR_5_PRIME Cpr100A
2L	9928738	2L_9928738_SNP [dm3] 2L_9928738_SNP [dm6]	A	T	2.196e^-4	0.736	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2L	12604986	2L_12604986_SNP [dm3] 2L_12604986_SNP [dm6]	T	A	2.198e^-4	0.736	INTRON nub	TF binding site BDTNP1_TFBS_da
3R	8497398	3R_8497398_SNP [dm3] 3R_12671676_SNP [dm6]	C	T	2.199e^-4	0.736	SYNONYMOUS_CODING CG14395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5916339	3R_5916339_SNP [dm3] 3R_10090617_SNP [dm6]	T	G	2.201e^-4	0.736	UPSTREAM mir-317 DOWNSTREAM CR45054 INTERGENIC
2R	14222689	2R_14222689_SNP [dm3] 2R_18335184_SNP [dm6]	C	T	2.201e^-4	0.736	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5777081	X_5777081_INS [dm3] X_5883048_INS [dm6]	C	CC	2.202e^-4	0.736	UTR_3_PRIME CG16721 EXON CR45668	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
X	18275494	X_18275494_SNP [dm3] X_18381461_SNP [dm6]	A	C	2.209e^-4	0.736	UTR_3_PRIME CG6179 DOWNSTREAM betaCOP
3R	12325825	3R_12325825_SNP [dm3] 3R_16500103_SNP [dm6]	G	T	2.221e^-4	0.736	SPLICE_SITE_REGION decay INTRON decay
2L	12420491	2L_12420491_SNP [dm3] 2L_12420491_SNP [dm6]	T	A	2.227e^-4	0.736	INTRON vir-1
3R	14134398	3R_14134398_SNP [dm3] 3R_18308676_SNP [dm6]	C	G	2.234e^-4	0.736	INTRON PKD
3L	14221060	3L_14221060_SNP [dm3] 3L_14227960_SNP [dm6]	T	A	2.241e^-4	0.736	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	729848	3R_729848_SNP [dm3] 3R_4904126_SNP [dm6]	C	T	2.243e^-4	0.736	INTERGENIC
2L	12260833	2L_12260833_SNP [dm3] 2L_12260833_SNP [dm6]	T	G	2.247e^-4	0.736	INTRON aret
3R	4296412	3R_4296412_SNP [dm3] 3R_8470690_SNP [dm6]	T	C	2.249e^-4	0.736	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
X	21186939	X_21186939_SNP [dm3] X_21315912_SNP [dm6]	T	A	2.257e^-4	0.736	UPSTREAM Rpt6 INTRON CG1801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3R	18125677	3R_18125677_SNP [dm3] 3R_22299955_SNP [dm6]	A	G	2.265e^-4	0.736	INTRON CG7084
X	21190719	X_21190719_SNP [dm3] X_21319692_SNP [dm6]	G	A	2.265e^-4	0.736	UPSTREAM CG33713 & 1 other DOWNSTREAM Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11250764	3L_11250764_SNP [dm3] 3L_11257664_SNP [dm6]	C	A	2.267e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9407170	2L_9407170_SNP [dm3] 2L_9407170_SNP [dm6]	T	A	2.273e^-4	0.736	INTRON Shawl
3R	5940953	3R_5940953_SNP [dm3] 3R_10115231_SNP [dm6]	C	A	2.287e^-4	0.736	INTRON CG3940
2L	5252932	2L_5252932_SNP [dm3] 2L_5252932_SNP [dm6]	G	A	2.293e^-4	0.736	INTRON tkv
3R	27505176	3R_27505176_SNP [dm3] 3R_31679454_SNP [dm6]	A	T	2.294e^-4	0.736	INTRON CG11550	TF binding site mE1_TFBS_sens
3L	13751346	3L_13751346_SNP [dm3] 3L_13758246_SNP [dm6]	C	T	2.296e^-4	0.736	INTRON bru-3
2R	17897217	2R_17897217_SNP [dm3] 2R_22009712_SNP [dm6]	T	A	2.297e^-4	0.736	INTRON CG34370
3L	1484972	3L_1484972_SNP [dm3] 3L_1484972_SNP [dm6]	T	A	2.301e^-4	0.736	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	25344450	3R_25344450_SNP [dm3] 3R_29518728_SNP [dm6]	A	G	2.304e^-4	0.736	INTERGENIC
2R	7574605	2R_7574605_SNP [dm3] 2R_11687100_SNP [dm6]	C	T	2.309e^-4	0.736	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs
3R	25344708	3R_25344708_SNP [dm3] 3R_29518986_SNP [dm6]	A	G	2.315e^-4	0.736	INTERGENIC
X	12363699	X_12363699_SNP [dm3] X_12469666_SNP [dm6]	T	A	2.324e^-4	0.736	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10184657	2L_10184657_SNP [dm3] 2L_10184657_SNP [dm6]	G	A	2.327e^-4	0.736	NON_SYNONYMOUS_CODING Sur	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	20485675	2L_20485675_SNP [dm3] 2L_20485675_SNP [dm6]	A	G	2.328e^-4	0.736	UPSTREAM CR44980 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20078135	2L_20078135_SNP [dm3] 2L_20078135_SNP [dm6]	A	G	2.330e^-4	0.736	INTRON neb	TF binding site mE1_TFBS_cad mE1_TFBS_zfh1
2R	16104484	2R_16104484_SNP [dm3] 2R_20216979_SNP [dm6]	G	A	2.331e^-4	0.736	INTERGENIC
3L	12177357	3L_12177357_SNP [dm3] 3L_12184257_SNP [dm6]	G	C	2.333e^-4	0.736	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
2L	8099956	2L_8099956_SNP [dm3] 2L_8099956_SNP [dm6]	T	A	2.341e^-4	0.736	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8099959	2L_8099959_SNP [dm3] 2L_8099959_SNP [dm6]	C	G	2.341e^-4	0.736	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22759317	3R_22759317_SNP [dm3] 3R_26933595_SNP [dm6]	C	A	2.346e^-4	0.736	INTRON sda
2L	11354607	2L_11354607_SNP [dm3] 2L_11354607_SNP [dm6]	G	T	2.347e^-4	0.736	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	10241686	2L_10241686_SNP [dm3] 2L_10241686_SNP [dm6]	G	A	2.347e^-4	0.736	SYNONYMOUS_CODING me31B UPSTREAM CR44995 DOWNSTREAM chico	TF binding site mE1_TFBS_sens
X	14123106	X_14123106_SNP [dm3] X_14229073_SNP [dm6]	A	G	2.348e^-4	0.736	SYNONYMOUS_CODING CG42271	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12371717	2L_12371717_SNP [dm3] 2L_12371717_SNP [dm6]	C	T	2.349e^-4	0.736	INTRON bru-2
3L	11440301	3L_11440301_SNP [dm3] 3L_11447201_SNP [dm6]	G	A	2.354e^-4	0.736	DOWNSTREAM CG7557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14800625	2L_14800625_SNP [dm3] 2L_14800625_SNP [dm6]	G	T	2.365e^-4	0.736	INTERGENIC
3L	10520316	3L_10520316_SNP [dm3] 3L_10527216_SNP [dm6]	T	A	2.369e^-4	0.736	INTRON A2bp1
X	21190649	X_21190649_SNP [dm3] X_21319622_SNP [dm6]	T	A	2.380e^-4	0.736	UPSTREAM CG33713 & 1 other DOWNSTREAM Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14009789	2L_14009789_SNP [dm3] 2L_14009789_SNP [dm6]	G	A	2.385e^-4	0.736	DOWNSTREAM CG42692 & 1 other INTERGENIC
2R	9595277	2R_9595277_SNP [dm3] 2R_13707772_SNP [dm6]	C	A	2.394e^-4	0.736	INTRON fas
3L	6013406	3L_6013406_SNP [dm3] 3L_6020306_SNP [dm6]	A	G	2.406e^-4	0.736	INTRON PVRAP
3L	8458020	3L_8458020_SNP [dm3] 3L_8464920_SNP [dm6]	A	T	2.411e^-4	0.736	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18125722	3R_18125722_SNP [dm3] 3R_22300000_SNP [dm6]	C	G	2.413e^-4	0.736	INTRON CG7084
3R	23481237	3R_23481237_SNP [dm3] 3R_27655515_SNP [dm6]	G	A	2.414e^-4	0.736	INTRON tau	TF binding site mE1_TFBS_chinmo
3L	4469827	3L_4469827_SNP [dm3] 3L_4469827_SNP [dm6]	A	T	2.415e^-4	0.736	UPSTREAM CG32249 INTERGENIC
2L	8578207	2L_8578207_SNP [dm3] 2L_8578207_SNP [dm6]	T	A	2.416e^-4	0.736	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8578208	2L_8578208_INS [dm3] 2L_8578208_INS [dm6]	A	ACTGAGG	2.416e^-4	0.736	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8578210	2L_8578210_SNP [dm3] 2L_8578210_SNP [dm6]	G	A	2.416e^-4	0.736	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12331216	2L_12331216_SNP [dm3] 2L_12331216_SNP [dm6]	A	G	2.418e^-4	0.736	INTERGENIC
2L	5551880	2L_5551880_SNP [dm3] 2L_5551880_SNP [dm6]	G	A	2.421e^-4	0.736	UTR_5_PRIME CG18269 DOWNSTREAM CG14013	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	796422	3R_796422_SNP [dm3] 3R_4970700_SNP [dm6]	G	A	2.427e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	7314087	2R_7314087_SNP [dm3] 2R_11426582_SNP [dm6]	C	G	2.434e^-4	0.736	INTRON Drip
2L	7711444	2L_7711444_SNP [dm3] 2L_7711444_SNP [dm6]	A	T	2.435e^-4	0.736	UPSTREAM CR44990 & 2 others DOWNSTREAM Tep3 INTRON Ntl
3R	25888931	3R_25888931_SNP [dm3] 3R_30063209_SNP [dm6]	A	C	2.437e^-4	0.736	NON_SYNONYMOUS_CODING sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	3967279	2L_3967279_SNP [dm3] 2L_3967279_SNP [dm6]	G	C	2.442e^-4	0.736	INTRON fred
2L	13134792	2L_13134792_SNP [dm3] 2L_13134792_SNP [dm6]	A	T	2.451e^-4	0.736	UTR_3_PRIME CG5122
X	10798925	X_10798925_SNP [dm3] X_10904892_SNP [dm6]	T	C	2.459e^-4	0.736	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18657666	2L_18657666_INS [dm3] 2L_18657666_INS [dm6]	T	TA	2.464e^-4	0.736	INTRON MESR3
3R	20002101	3R_20002101_SNP [dm3] 3R_24176379_SNP [dm6]	A	G	2.467e^-4	0.736	INTRON CG13606
2R	12562975	2R_12562975_DEL [dm3] 2R_16675470_DEL [dm6]	TCTGTGTGC	A	2.474e^-4	0.736	INTRON CG30463
X	2503580	X_2503580_SNP [dm3] X_2609547_SNP [dm6]	T	C	2.475e^-4	0.736	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18900295	X_18900295_SNP [dm3] X_19006262_SNP [dm6]	T	C	2.476e^-4	0.736	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26772222	3R_26772222_SNP [dm3] 3R_30946500_SNP [dm6]	C	T	2.480e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10854449	3L_10854449_SNP [dm3] 3L_10861349_SNP [dm6]	G	C	2.485e^-4	0.736	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	14082705	3L_14082705_SNP [dm3] 3L_14089605_SNP [dm6]	G	T	2.493e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11280061	3R_11280061_SNP [dm3] 3R_15454339_SNP [dm6]	T	C	2.493e^-4	0.736	INTRON AdamTS-A
2R	17504293	2R_17504293_SNP [dm3] 2R_21616788_SNP [dm6]	G	T	2.496e^-4	0.736	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13751347	3L_13751347_SNP [dm3] 3L_13758247_SNP [dm6]	T	G	2.501e^-4	0.736	INTRON bru-3
2R	12821426	2R_12821426_DEL [dm3] 2R_16933921_DEL [dm6]	GTGGC	T	2.504e^-4	0.736	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11897380	2R_11897380_SNP [dm3] 2R_16009875_SNP [dm6]	A	G	2.511e^-4	0.736	SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	19099302	2L_19099302_SNP [dm3] 2L_19099302_SNP [dm6]	A	G	2.515e^-4	0.736	INTRON Lim3	TF binding site mE1_TFBS_HSA
3R	27505177	3R_27505177_SNP [dm3] 3R_31679455_SNP [dm6]	G	A	2.524e^-4	0.736	INTRON CG11550	TF binding site mE1_TFBS_sens
3R	10516962	3R_10516962_INS [dm3] 3R_14691240_INS [dm6]	T	TTC	2.528e^-4	0.736	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2R	11878837	2R_11878837_SNP [dm3] 2R_15991332_SNP [dm6]	A	G	2.528e^-4	0.736	UPSTREAM CG8314 DOWNSTREAM Pex11 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	1308555	2L_1308555_SNP [dm3] 2L_1308555_SNP [dm6]	A	G	2.532e^-4	0.736	INTERGENIC
2L	14193682	2L_14193682_SNP [dm3] 2L_14193682_SNP [dm6]	G	A	2.537e^-4	0.736	INTRON Dyrk2	TF binding site mE1_TFBS_inv
3L	5140525	3L_5140525_SNP [dm3] 3L_5147425_SNP [dm6]	C	T	2.540e^-4	0.736	INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8578197	2L_8578197_SNP [dm3] 2L_8578197_SNP [dm6]	T	A	2.543e^-4	0.736	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10705827	3L_10705827_DEL [dm3] 3L_10712727_DEL [dm6]	TTTCTA	T	2.545e^-4	0.736	INTERGENIC
X	8434174	X_8434174_SNP [dm3] X_8540141_SNP [dm6]	G	A	2.556e^-4	0.736	INTRON Nrg
3R	780109	3R_780109_SNP [dm3] 3R_4954387_SNP [dm6]	C	T	2.557e^-4	0.736	NON_SYNONYMOUS_CODING CG14661	TF binding site mE1_TFBS_sens
X	5882561	X_5882561_SNP [dm3] X_5988528_SNP [dm6]	A	G	2.559e^-4	0.736	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	811058	3R_811058_SNP [dm3] 3R_4985336_SNP [dm6]	C	G	2.559e^-4	0.736	EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22667465	3R_22667465_SNP [dm3] 3R_26841743_SNP [dm6]	T	G	2.563e^-4	0.736	UTR_3_PRIME Tl DOWNSTREAM Lerp
2L	12604975	2L_12604975_SNP [dm3] 2L_12604975_SNP [dm6]	T	C	2.563e^-4	0.736	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1610636	3R_1610636_SNP [dm3] 3R_5784914_SNP [dm6]	G	T	2.566e^-4	0.736	INTRON kat-60L1
2R	4721482	2R_4721482_SNP [dm3] 2R_8833977_SNP [dm6]	G	A	2.567e^-4	0.736	SYNONYMOUS_CODING sns INTRON sns	TF binding site mE1_TFBS_cad
3R	781667	3R_781667_SNP [dm3] 3R_4955945_SNP [dm6]	G	A	2.569e^-4	0.736	UPSTREAM CG14661 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1650298	3L_1650298_SNP [dm3] 3L_1650298_SNP [dm6]	C	A	2.576e^-4	0.736	INTRON CG13920
X	5882559	X_5882559_SNP [dm3] X_5988526_SNP [dm6]	T	G	2.576e^-4	0.736	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17723223	2R_17723223_SNP [dm3] 2R_21835718_SNP [dm6]	C	G	2.578e^-4	0.736	NON_SYNONYMOUS_CODING CG4377 UPSTREAM CG4363
2L	6084954	2L_6084954_SNP [dm3] 2L_6084954_SNP [dm6]	C	A	2.579e^-4	0.736	INTRON Kr-h1
2L	5065768	2L_5065768_SNP [dm3] 2L_5065768_SNP [dm6]	G	T	2.583e^-4	0.736	UPSTREAM qtc INTRON qtc
3L	3113192	3L_3113192_SNP [dm3] 3L_3113192_SNP [dm6]	G	T	2.589e^-4	0.736	NON_SYNONYMOUS_CODING CG45067
3L	8373969	3L_8373969_SNP [dm3] 3L_8380869_SNP [dm6]	G	C	2.591e^-4	0.736	DOWNSTREAM ImpE1 INTRON ImpE1
2L	9932719	2L_9932719_SNP [dm3] 2L_9932719_SNP [dm6]	G	A	2.602e^-4	0.736	SYNONYMOUS_CODING Cpr30F	TF binding site mE1_TFBS_chinmo
X	12070385	X_12070385_INS [dm3] X_12176352_INS [dm6]	T	TGT	2.605e^-4	0.736	DOWNSTREAM CG1924 INTRON Ten-a
2L	17954757	2L_17954757_SNP [dm3] 2L_17954757_SNP [dm6]	T	A	2.607e^-4	0.736	INTERGENIC
3R	9783578	3R_9783578_SNP [dm3] 3R_13957856_SNP [dm6]	G	C	2.607e^-4	0.736	UPSTREAM Ipp INTERGENIC
2R	2427225	2R_2427225_SNP [dm3] 2R_6539720_SNP [dm6]	T	C	2.609e^-4	0.736	INTRON jing
2L	535830	2L_535830_SNP [dm3] 2L_535830_SNP [dm6]	T	A	2.617e^-4	0.736	INTRON ush
3R	11725755	3R_11725755_SNP [dm3] 3R_15900033_SNP [dm6]	C	G	2.617e^-4	0.736	INTRON glob1
2R	17067073	2R_17067073_SNP [dm3] 2R_21179568_SNP [dm6]	G	A	2.620e^-4	0.736	SYNONYMOUS_CODING Pu UPSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14972116	3R_14972116_DEL [dm3] 3R_19146394_DEL [dm6]	TAT	T	2.623e^-4	0.736	INTRON Ppcs
3R	18055216	3R_18055216_SNP [dm3] 3R_22229494_SNP [dm6]	C	T	2.624e^-4	0.736	INTRON SKIP
2L	13250408	2L_13250408_SNP [dm3] 2L_13250408_SNP [dm6]	T	A	2.627e^-4	0.736	DOWNSTREAM CG16820 INTERGENIC
2L	21861365	2L_21861365_SNP [dm3] 2L_21861365_SNP [dm6]	T	C	2.643e^-4	0.736	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6716816	X_6716816_SNP [dm3] X_6822783_SNP [dm6]	C	T	2.644e^-4	0.736	SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2694782	2R_2694782_SNP [dm3] 2R_6807277_SNP [dm6]	C	T	2.646e^-4	0.736	UPSTREAM SdhB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15434634	2R_15434634_SNP [dm3] 2R_19547129_SNP [dm6]	C	T	2.648e^-4	0.736	UPSTREAM sm INTRON sm
X	19918830	X_19918830_SNP [dm3] X_20024797_SNP [dm6]	T	A	2.653e^-4	0.736	UPSTREAM tRNA:CR32826 INTRON Dop2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15059831	2R_15059831_SNP [dm3] 2R_19172326_SNP [dm6]	G	A	2.653e^-4	0.736	INTRON CG10737
2L	10028364	2L_10028364_SNP [dm3] 2L_10028364_SNP [dm6]	G	A	2.656e^-4	0.736	NON_SYNONYMOUS_CODING CG13127
2L	14197310	2L_14197310_SNP [dm3] 2L_14197310_SNP [dm6]	A	G	2.656e^-4	0.736	INTRON Dyrk2
3L	5639458	3L_5639458_SNP [dm3] 3L_5646358_SNP [dm6]	T	C	2.657e^-4	0.736	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22739663	3R_22739663_SNP [dm3] 3R_26913941_SNP [dm6]	C	A	2.663e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17917490	2R_17917490_SNP [dm3] 2R_22029985_SNP [dm6]	G	A	2.667e^-4	0.737	INTRON CG34370
3L	9945902	3L_9945902_SNP [dm3] 3L_9952802_SNP [dm6]	T	C	2.675e^-4	0.737	SYNONYMOUS_CODING CG34356
2R	18437253	2R_18437253_SNP [dm3] 2R_22549748_SNP [dm6]	G	A	2.677e^-4	0.737	UPSTREAM CG6018 INTRON px
2R	11876228	2R_11876228_DEL [dm3] 2R_15988723_DEL [dm6]	GG	G	2.702e^-4	0.742	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
2L	4867788	2L_4867788_SNP [dm3] 2L_4867788_SNP [dm6]	G	C	2.705e^-4	0.742	INTRON pog
2L	12345798	2L_12345798_SNP [dm3] 2L_12345798_SNP [dm6]	A	G	2.710e^-4	0.742	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
X	6719981	X_6719981_SNP [dm3] X_6825948_SNP [dm6]	T	C	2.710e^-4	0.742	NON_SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14222122	2R_14222122_SNP [dm3] 2R_18334617_SNP [dm6]	G	T	2.731e^-4	0.746	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4426626	X_4426626_SNP [dm3] X_4532593_SNP [dm6]	C	T	2.738e^-4	0.746	SYNONYMOUS_CODING CG3556 INTRON CR32773	TF binding site mE1_TFBS_chinmo
2L	10537521	2L_10537521_SNP [dm3] 2L_10537521_SNP [dm6]	T	C	2.738e^-4	0.746	DOWNSTREAM CG18302 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	8540135	2L_8540135_SNP [dm3] 2L_8540135_SNP [dm6]	C	A	2.739e^-4	0.746	INTRON CG17834
2R	13485849	2R_13485849_SNP [dm3] 2R_17598344_SNP [dm6]	C	T	2.759e^-4	0.748	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18285889	2L_18285889_INS [dm3] 2L_18285889_INS [dm6]	T	TT	2.760e^-4	0.748	UPSTREAM CG31787 INTERGENIC
2R	8866299	2R_8866299_SNP [dm3] 2R_12978794_SNP [dm6]	G	T	2.764e^-4	0.748	INTRON Psc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11877154	2R_11877154_SNP [dm3] 2R_15989649_SNP [dm6]	T	A	2.781e^-4	0.748	UPSTREAM Strn-Mlck DOWNSTREAM CG8314 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8946333	3R_8946333_SNP [dm3] 3R_13120611_SNP [dm6]	T	A	2.785e^-4	0.748	INTRON timeout
3L	8255735	3L_8255735_SNP [dm3] 3L_8262635_SNP [dm6]	C	T	2.787e^-4	0.748	INTRON Dscam4
3R	13677437	3R_13677437_SNP [dm3] 3R_17851715_SNP [dm6]	T	C	2.793e^-4	0.748	INTRON tinc
2L	1838929	2L_1838929_SNP [dm3] 2L_1838929_SNP [dm6]	A	G	2.797e^-4	0.748	DOWNSTREAM CR44073 INTRON wry
3L	5079820	3L_5079820_SNP [dm3] 3L_5079820_SNP [dm6]	T	C	2.798e^-4	0.748	UPSTREAM Con INTERGENIC
2R	9044730	2R_9044730_SNP [dm3] 2R_13157225_SNP [dm6]	G	C	2.801e^-4	0.748	SYNONYMOUS_CODING TppII
X	21903463	X_21903463_SNP [dm3] X_22501627_SNP [dm6]	T	C	2.808e^-4	0.748	NON_SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
2L	6305817	2L_6305817_SNP [dm3] 2L_6305817_SNP [dm6]	C	T	2.809e^-4	0.748	INTRON Ddr	TF binding site mE1_TFBS_chinmo
2L	8185707	2L_8185707_SNP [dm3] 2L_8185707_SNP [dm6]	C	T	2.812e^-4	0.748	INTRON Piezo
3R	9374037	3R_9374037_SNP [dm3] 3R_13548315_SNP [dm6]	G	T	2.817e^-4	0.748	INTERGENIC
3L	2163699	3L_2163699_SNP [dm3] 3L_2163699_SNP [dm6]	A	G	2.818e^-4	0.748	UTR_5_PRIME CG15822 INTRON CG15822
3L	2428505	3L_2428505_SNP [dm3] 3L_2428505_SNP [dm6]	T	A	2.819e^-4	0.748	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15338410	2L_15338410_SNP [dm3] 2L_15338410_SNP [dm6]	T	C	2.819e^-4	0.748	INTERGENIC
X	17577188	X_17577188_DEL [dm3] X_17683155_DEL [dm6]	TACAT	T	2.823e^-4	0.748	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5938423	3R_5938423_DEL [dm3] 3R_10112701_DEL [dm6]	AA	A	2.830e^-4	0.748	UTR_5_PRIME CG3940	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9926967	2L_9926967_SNP [dm3] 2L_9926967_SNP [dm6]	C	T	2.831e^-4	0.748	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5336279	2L_5336279_SNP [dm3] 2L_5336279_SNP [dm6]	T	C	2.836e^-4	0.748	UPSTREAM fusl INTRON fusl
3R	10505841	3R_10505841_SNP [dm3] 3R_14680119_SNP [dm6]	G	A	2.842e^-4	0.748	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	21217073	X_21217073_INS [dm3] X_21346046_INS [dm6]	A	ATGATTCTCTTTCGA...	2.845e^-4	0.748	DOWNSTREAM fliI & 1 other INTRON dod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	4549908	2R_4549908_SNP [dm3] 2R_8662403_SNP [dm6]	G	A	2.845e^-4	0.748	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12093009	3L_12093009_SNP [dm3] 3L_12099909_SNP [dm6]	T	C	2.846e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25439951	3R_25439951_SNP [dm3] 3R_29614229_SNP [dm6]	T	A	2.850e^-4	0.748	INTRON alph
2L	6638731	2L_6638731_SNP [dm3] 2L_6638731_SNP [dm6]	T	A	2.875e^-4	0.752	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21174822	X_21174822_SNP [dm3] X_21303795_SNP [dm6]	T	A	2.881e^-4	0.752	UPSTREAM CG1718 & 1 other DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	10977210	3L_10977210_SNP [dm3] 3L_10984110_SNP [dm6]	A	G	2.882e^-4	0.752	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13322958	3R_13322958_SNP [dm3] 3R_17497236_SNP [dm6]	A	C	2.884e^-4	0.752	INTRON Dscam3
2L	7093394	2L_7093394_SNP [dm3] 2L_7093394_SNP [dm6]	G	T	2.887e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1307928	2L_1307928_SNP [dm3] 2L_1307928_SNP [dm6]	G	A	2.909e^-4	0.755	INTERGENIC
3R	2257666	3R_2257666_SNP [dm3] 3R_6431944_SNP [dm6]	C	T	2.912e^-4	0.755	INTRON gpp
3R	10714704	3R_10714704_SNP [dm3] 3R_14888982_SNP [dm6]	C	A	2.914e^-4	0.755	UTR_3_PRIME CG33332 DOWNSTREAM CycC
3R	9451738	3R_9451738_SNP [dm3] 3R_13626016_SNP [dm6]	T	A	2.917e^-4	0.755	INTERGENIC
X	7936502	X_7936502_SNP [dm3] X_8042469_SNP [dm6]	T	C	2.921e^-4	0.755	SYNONYMOUS_CODING fs_1_h	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8373965	3L_8373965_INS [dm3] 3L_8380865_INS [dm6]	T	TGAT	2.928e^-4	0.755	DOWNSTREAM ImpE1 INTRON ImpE1
X	7327693	X_7327693_SNP [dm3] X_7433660_SNP [dm6]	G	A	2.928e^-4	0.755	INTERGENIC
2L	12368568	2L_12368568_SNP [dm3] 2L_12368568_SNP [dm6]	G	A	2.930e^-4	0.755	INTRON bru-2
2L	15202113	2L_15202113_SNP [dm3] 2L_15202113_SNP [dm6]	C	A	2.949e^-4	0.755	UPSTREAM CR43357 & 1 other INTERGENIC
3L	6369922	3L_6369922_SNP [dm3] 3L_6376822_SNP [dm6]	A	T	2.959e^-4	0.755	INTERGENIC
3L	6370151	3L_6370151_SNP [dm3] 3L_6377051_SNP [dm6]	A	G	2.963e^-4	0.755	INTERGENIC
X	17577462	X_17577462_DEL [dm3] X_17683429_DEL [dm6]	CAC	C	2.965e^-4	0.755	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16589467	2L_16589467_SNP [dm3] 2L_16589467_SNP [dm6]	G	A	2.966e^-4	0.755	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
X	19624869	X_19624869_SNP [dm3] X_19730836_SNP [dm6]	G	T	2.969e^-4	0.755	UPSTREAM AP-1-2beta DOWNSTREAM CG12531 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	10615861	2R_10615861_SNP [dm3] 2R_14728356_SNP [dm6]	A	C	2.973e^-4	0.755	INTERGENIC
3R	23316951	3R_23316951_SNP [dm3] 3R_27491229_SNP [dm6]	C	T	2.981e^-4	0.755	INTERGENIC
3L	2518288	3L_2518288_SNP [dm3] 3L_2518288_SNP [dm6]	C	T	2.981e^-4	0.755	INTRON Spn & 1 other
2L	13990437	2L_13990437_SNP [dm3] 2L_13990437_SNP [dm6]	G	A	2.983e^-4	0.755	INTRON rk
3L	16915356	3L_16915356_DEL [dm3] 3L_16922256_DEL [dm6]	ACA	A	2.985e^-4	0.755	UTR_3_PRIME Lmpt UPSTREAM CG13028
3R	710187	3R_710187_SNP [dm3] 3R_4884465_SNP [dm6]	A	C	2.986e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23773965	3R_23773965_SNP [dm3] 3R_27948243_SNP [dm6]	C	T	2.994e^-4	0.755	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8511519	3R_8511519_SNP [dm3] 3R_12685797_SNP [dm6]	C	T	2.998e^-4	0.755	INTRON kar	TF binding site mE1_TFBS_cad
2L	2658346	2L_2658346_SNP [dm3] 2L_2658346_SNP [dm6]	G	T	3.004e^-4	0.755	INTERGENIC
2R	14703996	2R_14703996_SNP [dm3] 2R_18816491_SNP [dm6]	G	C	3.011e^-4	0.755	UTR_5_PRIME CG15096 DOWNSTREAM CR43418
3R	14793310	3R_14793310_INS [dm3] 3R_18967588_INS [dm6]	G	AGTTATAACCA...	3.012e^-4	0.755	INTRON CG42613 & 1 other
2L	17631913	2L_17631913_SNP [dm3] 2L_17631913_SNP [dm6]	C	A	3.014e^-4	0.755	INTERGENIC
3L	14220774	3L_14220774_SNP [dm3] 3L_14227674_SNP [dm6]	T	C	3.014e^-4	0.755	INTRON nuf	TF binding site BDTNP1_TFBS_sna
2L	5159342	2L_5159342_SNP [dm3] 2L_5159342_SNP [dm6]	C	A	3.019e^-4	0.755	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	19394096	2L_19394096_SNP [dm3] 2L_19394096_SNP [dm6]	T	C	3.024e^-4	0.755	UPSTREAM CG31798 & 1 other INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	616342	3L_616342_SNP [dm3] 3L_616342_SNP [dm6]	T	A	3.032e^-4	0.755	EXON CR42719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26935257	3R_26935257_SNP [dm3] 3R_31109535_SNP [dm6]	C	T	3.032e^-4	0.755	UPSTREAM CG11318 INTERGENIC
3L	481640	3L_481640_INS [dm3] 3L_481640_INS [dm6]	A	ATA	3.034e^-4	0.755	INTRON klar
X	19679438	X_19679438_SNP [dm3] X_19785405_SNP [dm6]	C	T	3.039e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10088788	3L_10088788_SNP [dm3] 3L_10095688_SNP [dm6]	C	G	3.039e^-4	0.755	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2L	8474334	2L_8474334_SNP [dm3] 2L_8474334_SNP [dm6]	T	C	3.045e^-4	0.755	INTRON d
X	21190413	X_21190413_SNP [dm3] X_21319386_SNP [dm6]	T	C	3.056e^-4	0.755	UPSTREAM CG33713 & 1 other DOWNSTREAM Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	8552324	X_8552324_SNP [dm3] X_8658291_SNP [dm6]	C	T	3.058e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21301264	2L_21301264_SNP [dm3] 2L_21301264_SNP [dm6]	A	C	3.059e^-4	0.755	INTRON Mio
X	21217117	X_21217117_SNP [dm3] X_21346090_SNP [dm6]	A	C	3.060e^-4	0.755	DOWNSTREAM pen INTRON dod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18938747	2R_18938747_SNP [dm3] 2R_23051224_SNP [dm6]	C	T	3.063e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14565371	2R_14565371_SNP [dm3] 2R_18677866_SNP [dm6]	G	C	3.064e^-4	0.755	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	10535208	2L_10535208_SNP [dm3] 2L_10535208_SNP [dm6]	C	T	3.072e^-4	0.755	SYNONYMOUS_CODING CG18302
3R	19271432	3R_19271432_SNP [dm3] 3R_23445710_SNP [dm6]	T	A	3.075e^-4	0.755	INTRON CG4374
2R	8830343	2R_8830343_SNP [dm3] 2R_12942838_SNP [dm6]	C	A	3.078e^-4	0.755	NON_SYNONYMOUS_CODING Mdr49	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20565914	2R_20565914_SNP [dm3] 2R_24678391_SNP [dm6]	C	T	3.083e^-4	0.755	INTRON Mmp1	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	13961335	3R_13961335_INS [dm3] 3R_18135613_INS [dm6]	G	GA	3.083e^-4	0.755	DOWNSTREAM sr INTERGENIC
3L	8804408	3L_8804408_SNP [dm3] 3L_8811308_SNP [dm6]	T	G	3.097e^-4	0.755	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11915238	2L_11915238_SNP [dm3] 2L_11915238_SNP [dm6]	T	C	3.105e^-4	0.755	INTRON Pde1c
2R	6508493	2R_6508493_DEL [dm3] 2R_10620988_DEL [dm6]	TGA	T	3.110e^-4	0.755	INTRON CG11883
3R	26980209	3R_26980209_SNP [dm3] 3R_31154487_SNP [dm6]	C	T	3.116e^-4	0.755	INTRON Gycbeta100B
2R	4611147	2R_4611147_DEL [dm3] 2R_8723642_DEL [dm6]	CTGATGCTTTGAC...	C	3.118e^-4	0.755	UPSTREAM gcl & 1 other INTRON CG14767	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14332765	3L_14332765_SNP [dm3] 3L_14339665_SNP [dm6]	G	C	3.124e^-4	0.755	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17965120	2L_17965120_SNP [dm3] 2L_17965120_SNP [dm6]	C	T	3.130e^-4	0.755	NON_SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA mE1_TFBS_sens
3L	22115973	3L_22115973_SNP [dm3] 3L_22122873_SNP [dm6]	A	G	3.133e^-4	0.755	DOWNSTREAM CR45236 EXON CR45235
2L	10539049	2L_10539049_SNP [dm3] 2L_10539049_SNP [dm6]	T	A	3.137e^-4	0.755	INTERGENIC
3R	14718729	3R_14718729_SNP [dm3] 3R_18893007_SNP [dm6]	T	G	3.142e^-4	0.755	INTERGENIC
2L	3905887	2L_3905887_SNP [dm3] 2L_3905887_SNP [dm6]	C	T	3.147e^-4	0.755	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	22150868	X_22150868_SNP [dm3] X_22749032_SNP [dm6]	C	G	3.151e^-4	0.755	INTRON CR44997
2L	7068204	2L_7068204_SNP [dm3] 2L_7068204_SNP [dm6]	A	G	3.152e^-4	0.755	SYNONYMOUS_CODING CG11289	TF binding site mE1_TFBS_sens
2L	20269909	2L_20269909_SNP [dm3] 2L_20269909_SNP [dm6]	A	C	3.157e^-4	0.755	INTERGENIC
3L	12666128	3L_12666128_SNP [dm3] 3L_12673028_SNP [dm6]	A	C	3.162e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1544472	2L_1544472_SNP [dm3] 2L_1544472_SNP [dm6]	A	C	3.163e^-4	0.755	INTERGENIC
2L	22557681	2L_22557681_SNP [dm3] 2L_22664949_SNP [dm6]	T	C	3.164e^-4	0.755	INTRON CG40006
3L	12054733	3L_12054733_SNP [dm3] 3L_12061633_SNP [dm6]	C	T	3.180e^-4	0.755	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1332846	3L_1332846_SNP [dm3] 3L_1332846_SNP [dm6]	G	A	3.194e^-4	0.755	SYNONYMOUS_CODING msd5 DOWNSTREAM CG2211 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	5853223	2R_5853223_INS [dm3] 2R_9965718_INS [dm6]	A	AT	3.199e^-4	0.755	UPSTREAM CG1418 INTERGENIC	transposable element FlyBase
X	5252460	X_5252460_SNP [dm3] X_5358427_SNP [dm6]	C	G	3.201e^-4	0.755	SYNONYMOUS_CODING SK INTRON SK
X	12738561	X_12738561_DEL [dm3] X_12844528_DEL [dm6]	AC	A	3.205e^-4	0.755	INTRON Pde9
3L	1335122	3L_1335122_SNP [dm3] 3L_1335122_SNP [dm6]	G	A	3.206e^-4	0.755	START_GAINED CG2211 UTR_5_PRIME l_3_02640 & 1 other UPSTREAM CG2211	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8582480	2L_8582480_SNP [dm3] 2L_8582480_SNP [dm6]	T	C	3.206e^-4	0.755	INTRON Sema-1a
2L	10551255	2L_10551255_SNP [dm3] 2L_10551255_SNP [dm6]	T	A	3.207e^-4	0.755	INTRON Trim9
2L	17954784	2L_17954784_SNP [dm3] 2L_17954784_SNP [dm6]	A	T	3.213e^-4	0.755	INTERGENIC
2R	9646706	2R_9646706_SNP [dm3] 2R_13759201_SNP [dm6]	G	C	3.217e^-4	0.755	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23267816	3R_23267816_SNP [dm3] 3R_27442094_SNP [dm6]	C	T	3.227e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14726818	2L_14726818_SNP [dm3] 2L_14726818_SNP [dm6]	A	G	3.228e^-4	0.755	SYNONYMOUS_CODING CG42685
2L	12261063	2L_12261063_SNP [dm3] 2L_12261063_SNP [dm6]	T	A	3.241e^-4	0.755	INTRON aret
2R	7038303	2R_7038303_SNP [dm3] 2R_11150798_SNP [dm6]	G	A	3.242e^-4	0.755	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	18900193	X_18900193_SNP [dm3] X_19006160_SNP [dm6]	A	G	3.243e^-4	0.755	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14703993	2R_14703993_DEL [dm3] 2R_18816488_DEL [dm6]	GG	G	3.256e^-4	0.755	UTR_5_PRIME CG15096 DOWNSTREAM CR43418
2L	5581392	2L_5581392_SNP [dm3] 2L_5581392_SNP [dm6]	C	A	3.260e^-4	0.755	UPSTREAM CG14011 INTERGENIC
3L	10424325	3L_10424325_SNP [dm3] 3L_10431225_SNP [dm6]	C	T	3.263e^-4	0.755	SYNONYMOUS_CODING Ir67b
3L	13261826	3L_13261826_SNP [dm3] 3L_13268726_SNP [dm6]	T	G	3.264e^-4	0.755	INTRON caps
3R	10333474	3R_10333474_SNP [dm3] 3R_14507752_SNP [dm6]	T	C	3.265e^-4	0.755	INTRON CR44177
2R	14343007	2R_14343007_SNP [dm3] 2R_18455502_SNP [dm6]	C	G	3.267e^-4	0.755	INTERGENIC
2L	21807127	2L_21807127_SNP [dm3] 2L_21807127_SNP [dm6]	C	T	3.277e^-4	0.755	INTERGENIC
X	16935334	X_16935334_SNP [dm3] X_17041301_SNP [dm6]	T	C	3.285e^-4	0.755	INTRON CG45002
2R	13239930	2R_13239930_SNP [dm3] 2R_17352425_SNP [dm6]	A	G	3.289e^-4	0.755	UTR_3_PRIME mbl INTRON mbl
3L	12177331	3L_12177331_SNP [dm3] 3L_12184231_SNP [dm6]	T	C	3.289e^-4	0.755	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
2L	21815438	2L_21815438_SNP [dm3] 2L_21815438_SNP [dm6]	C	T	3.294e^-4	0.755	INTERGENIC
2R	9828244	2R_9828244_SNP [dm3] 2R_13940739_SNP [dm6]	C	T	3.299e^-4	0.755	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	11702098	3R_11702098_SNP [dm3] 3R_15876376_SNP [dm6]	T	C	3.312e^-4	0.755	UPSTREAM CG31183 INTERGENIC
2L	17874864	2L_17874864_SNP [dm3] 2L_17874864_SNP [dm6]	C	A	3.315e^-4	0.755	INTRON CadN2
2L	5496959	2L_5496959_SNP [dm3] 2L_5496959_SNP [dm6]	C	T	3.316e^-4	0.755	INTERGENIC
2L	7159343	2L_7159343_SNP [dm3] 2L_7159343_SNP [dm6]	T	A	3.320e^-4	0.755	INTERGENIC
3R	802963	3R_802963_SNP [dm3] 3R_4977241_SNP [dm6]	C	T	3.321e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17681694	2R_17681694_SNP [dm3] 2R_21794189_SNP [dm6]	C	T	3.323e^-4	0.755	INTERGENIC
3R	13583932	3R_13583932_SNP [dm3] 3R_17758210_SNP [dm6]	A	T	3.327e^-4	0.755	INTRON TyrR
3L	13264136	3L_13264136_SNP [dm3] 3L_13271036_SNP [dm6]	A	C	3.328e^-4	0.755	INTRON caps
2R	18996130	2R_18996130_SNP [dm3] 2R_23108607_SNP [dm6]	G	A	3.331e^-4	0.755	INTERGENIC
2L	4325207	2L_4325207_SNP [dm3] 2L_4325207_SNP [dm6]	T	A	3.346e^-4	0.755	INTRON CG16857
2L	17960180	2L_17960180_SNP [dm3] 2L_17960180_SNP [dm6]	C	T	3.349e^-4	0.755	INTERGENIC
2L	17424058	2L_17424058_SNP [dm3] 2L_17424058_SNP [dm6]	C	A	3.351e^-4	0.755	INTRON Dif
3L	14759015	3L_14759015_SNP [dm3] 3L_14765915_SNP [dm6]	G	A	3.353e^-4	0.755	UTR_3_PRIME CG9384
3L	1537799	3L_1537799_SNP [dm3] 3L_1537799_SNP [dm6]	T	C	3.359e^-4	0.755	SYNONYMOUS_CODING CG7852 UPSTREAM CG12091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	800405	3R_800405_SNP [dm3] 3R_4974683_SNP [dm6]	T	C	3.360e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11164943	3L_11164943_SNP [dm3] 3L_11171843_SNP [dm6]	C	T	3.363e^-4	0.755	SYNONYMOUS_CODING CG7616	TF binding site mE1_TFBS_cad
2R	10570157	2R_10570157_SNP [dm3] 2R_14682652_SNP [dm6]	A	C	3.364e^-4	0.755	INTRON mspo
2L	5336458	2L_5336458_DEL [dm3] 2L_5336458_DEL [dm6]	TC	T	3.366e^-4	0.755	UPSTREAM fusl INTRON fusl
3R	9364259	3R_9364259_SNP [dm3] 3R_13538537_SNP [dm6]	A	T	3.367e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14658371	3R_14658371_SNP [dm3] 3R_18832649_SNP [dm6]	T	C	3.369e^-4	0.755	INTRON CG18208
3R	10645754	3R_10645754_SNP [dm3] 3R_14820032_SNP [dm6]	G	T	3.371e^-4	0.755	NON_SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25439933	3R_25439933_SNP [dm3] 3R_29614211_SNP [dm6]	T	A	3.379e^-4	0.755	INTRON alph
3R	23496921	3R_23496921_SNP [dm3] 3R_27671199_SNP [dm6]	A	C	3.389e^-4	0.755	INTRON unc80	TF binding site mE1_TFBS_cad
2L	14923087	2L_14923087_SNP [dm3] 2L_14923087_SNP [dm6]	G	A	3.396e^-4	0.755	SPLICE_SITE_REGION CG42313 INTRON CG42313
3L	6370070	3L_6370070_SNP [dm3] 3L_6376970_SNP [dm6]	T	A	3.403e^-4	0.755	INTERGENIC
3R	3315257	3R_3315257_SNP [dm3] 3R_7489535_SNP [dm6]	T	G	3.406e^-4	0.755	UPSTREAM alpha-Est10 INTRON alpha-Est10	TF binding site mE1_TFBS_cnc
2L	13135078	2L_13135078_SNP [dm3] 2L_13135078_SNP [dm6]	G	A	3.410e^-4	0.755	DOWNSTREAM CG5122 INTERGENIC
2R	8208994	2R_8208994_SNP [dm3] 2R_12321489_SNP [dm6]	A	C	3.411e^-4	0.755	SYNONYMOUS_CODING CG13163 UPSTREAM CR44316	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10578273	3L_10578273_DEL [dm3] 3L_10585173_DEL [dm6]	AGCA	A	3.411e^-4	0.755	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14658259	3R_14658259_SNP [dm3] 3R_18832537_SNP [dm6]	T	A	3.416e^-4	0.755	INTRON CG18208
X	13573416	X_13573416_SNP [dm3] X_13679383_SNP [dm6]	T	A	3.420e^-4	0.755	INTRON CG12177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10371480	2L_10371480_SNP [dm3] 2L_10371480_SNP [dm6]	A	C	3.422e^-4	0.755	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2691902	2R_2691902_SNP [dm3] 2R_6804397_SNP [dm6]	T	A	3.422e^-4	0.755	INTERGENIC
2R	2692437	2R_2692437_SNP [dm3] 2R_6804932_SNP [dm6]	C	T	3.422e^-4	0.755	INTERGENIC
2R	4633484	2R_4633484_SNP [dm3] 2R_8745979_SNP [dm6]	G	A	3.429e^-4	0.755	UTR_5_PRIME CG8740 INTRON CG8740
3L	14469642	3L_14469642_SNP [dm3] 3L_14476542_SNP [dm6]	A	G	3.429e^-4	0.755	UTR_5_PRIME bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2L	11354621	2L_11354621_SNP [dm3] 2L_11354621_SNP [dm6]	A	C	3.443e^-4	0.755	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3R	10516073	3R_10516073_SNP [dm3] 3R_14690351_SNP [dm6]	C	T	3.454e^-4	0.755	INTRON Meltrin
3L	9253429	3L_9253429_SNP [dm3] 3L_9260329_SNP [dm6]	A	C	3.455e^-4	0.755	INTRON GluRIB
2L	13131063	2L_13131063_SNP [dm3] 2L_13131063_SNP [dm6]	A	G	3.456e^-4	0.755	SYNONYMOUS_CODING CG5122
3R	19907366	3R_19907366_SNP [dm3] 3R_24081644_SNP [dm6]	C	T	3.457e^-4	0.755	INTRON 4EHP
3R	11726121	3R_11726121_DEL [dm3] 3R_15900399_DEL [dm6]	CAAAGTAT	C	3.459e^-4	0.755	INTRON glob1
3L	15710645	3L_15710645_SNP [dm3] 3L_15717545_SNP [dm6]	C	T	3.477e^-4	0.755	UPSTREAM CG42570 INTRON CG42571
2R	13996950	2R_13996950_SNP [dm3] 2R_18109445_SNP [dm6]	G	A	3.479e^-4	0.755	UPSTREAM CG34196 INTERGENIC
3R	20884299	3R_20884299_SNP [dm3] 3R_25058577_SNP [dm6]	C	T	3.484e^-4	0.755	UPSTREAM Unc-13-4B INTRON Unc-13-4B
2L	1098188	2L_1098188_SNP [dm3] 2L_1098188_SNP [dm6]	T	C	3.495e^-4	0.755	INTRON CG4629
3R	23958792	3R_23958792_SNP [dm3] 3R_28133070_SNP [dm6]	C	G	3.495e^-4	0.755	INTERGENIC
3L	14671530	3L_14671530_SNP [dm3] 3L_14678430_SNP [dm6]	C	G	3.499e^-4	0.755	UPSTREAM CG4914 INTRON ome
3L	18870984	3L_18870984_INS [dm3] 3L_18877884_INS [dm6]	T	TT	3.504e^-4	0.755	UTR_3_PRIME Ugt DOWNSTREAM CG3961
3R	4134256	3R_4134256_SNP [dm3] 3R_8308534_SNP [dm6]	A	G	3.512e^-4	0.755	SYNONYMOUS_CODING tex UPSTREAM mir-4918 DOWNSTREAM CG11693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9974186	X_9974186_SNP [dm3] X_10080153_SNP [dm6]	G	A	3.516e^-4	0.755	SYNONYMOUS_CODING ZAP3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	17882455	2L_17882455_SNP [dm3] 2L_17882455_SNP [dm6]	T	C	3.520e^-4	0.755	INTERGENIC
2R	18095050	2R_18095050_INS [dm3] 2R_22207545_INS [dm6]	A	ATGGTA	3.522e^-4	0.755	DOWNSTREAM CG3264 INTRON CG3290	TF binding site mE1_TFBS_HSA
3L	12534217	3L_12534217_SNP [dm3] 3L_12541117_SNP [dm6]	C	T	3.530e^-4	0.755	UPSTREAM CR43612 INTRON sowah	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	15164165	3R_15164165_SNP [dm3] 3R_19338443_SNP [dm6]	A	T	3.536e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14177879	3L_14177879_SNP [dm3] 3L_14184779_SNP [dm6]	G	A	3.541e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5946931	2L_5946931_SNP [dm3] 2L_5946931_SNP [dm6]	T	A	3.543e^-4	0.755	DOWNSTREAM CR44986 INTRON Gpdh
3R	10376141	3R_10376141_SNP [dm3] 3R_14550419_SNP [dm6]	A	C	3.543e^-4	0.755	INTRON Pde6
2R	6983251	2R_6983251_SNP [dm3] 2R_11095746_SNP [dm6]	A	T	3.547e^-4	0.755	INTRON luna	TF binding site BDTNP1_TFBS_twi
2L	21874778	2L_21874778_SNP [dm3] 2L_21874778_SNP [dm6]	C	T	3.556e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1714812	2L_1714812_SNP [dm3] 2L_1714812_SNP [dm6]	A	T	3.559e^-4	0.755	INTRON frtz	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	13531935	3R_13531935_SNP [dm3] 3R_17706213_SNP [dm6]	C	A	3.561e^-4	0.755	INTRON osa
X	8290845	X_8290845_SNP [dm3] X_8396812_SNP [dm6]	G	A	3.562e^-4	0.755	DOWNSTREAM CG15345 INTERGENIC
3L	5442481	3L_5442481_SNP [dm3] 3L_5449381_SNP [dm6]	T	A	3.564e^-4	0.755	INTERGENIC
3R	4303401	3R_4303401_SNP [dm3] 3R_8477679_SNP [dm6]	T	G	3.565e^-4	0.755	UPSTREAM CG45263 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run
2R	10498724	2R_10498724_SNP [dm3] 2R_14611219_SNP [dm6]	C	A	3.565e^-4	0.755	SYNONYMOUS_CODING Su_var_2-HP2
X	21907896	X_21907896_SNP [dm3] X_22506060_SNP [dm6]	G	A	3.576e^-4	0.755	SYNONYMOUS_CODING l_1_G0196
3L	4497387	3L_4497387_SNP [dm3] 3L_4497387_SNP [dm6]	A	G	3.583e^-4	0.755	INTRON CG13721	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2155179	X_2155179_SNP [dm3] X_2261146_SNP [dm6]	T	G	3.588e^-4	0.755	NON_SYNONYMOUS_CODING l_1_G0144	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8099958	2L_8099958_SNP [dm3] 2L_8099958_SNP [dm6]	A	T	3.592e^-4	0.755	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14617637	2R_14617637_SNP [dm3] 2R_18730132_SNP [dm6]	C	A	3.593e^-4	0.755	SYNONYMOUS_CODING List INTRON Hs3st-A
3R	802878	3R_802878_SNP [dm3] 3R_4977156_SNP [dm6]	A	G	3.596e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22759315	3R_22759315_SNP [dm3] 3R_26933593_SNP [dm6]	G	C	3.596e^-4	0.755	INTRON sda
X	19624421	X_19624421_SNP [dm3] X_19730388_SNP [dm6]	A	G	3.600e^-4	0.755	UPSTREAM AP-1-2beta DOWNSTREAM CG12531 INTERGENIC	TF binding site mE1_TFBS_HSA
X	4426728	X_4426728_SNP [dm3] X_4532695_SNP [dm6]	G	T	3.610e^-4	0.755	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_chinmo
3R	11146115	3R_11146115_SNP [dm3] 3R_15320393_SNP [dm6]	G	A	3.613e^-4	0.755	UTR_5_PRIME CG44040 UPSTREAM ear & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16573888	2R_16573888_SNP [dm3] 2R_20686383_SNP [dm6]	T	A	3.618e^-4	0.755	SYNONYMOUS_CODING Gr57a
3L	2121589	3L_2121589_SNP [dm3] 3L_2121589_SNP [dm6]	A	C	3.619e^-4	0.755	INTRON zormin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17896552	2R_17896552_DEL [dm3] 2R_22009047_DEL [dm6]	AAAAGAACTTGGC...	A	3.622e^-4	0.755	INTRON CG34370
3R	25345300	3R_25345300_SNP [dm3] 3R_29519578_SNP [dm6]	C	T	3.628e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16819672	3L_16819672_SNP [dm3] 3L_16826572_SNP [dm6]	T	C	3.629e^-4	0.755	INTRON CG13024
2R	9370172	2R_9370172_SNP [dm3] 2R_13482667_SNP [dm6]	C	A	3.633e^-4	0.755	DOWNSTREAM cbc INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11273279	3L_11273279_SNP [dm3] 3L_11280179_SNP [dm6]	G	A	3.633e^-4	0.755	INTERGENIC
2R	13746463	2R_13746463_SNP [dm3] 2R_17858958_SNP [dm6]	G	A	3.634e^-4	0.755	INTRON olf186-F
2L	5336302	2L_5336302_SNP [dm3] 2L_5336302_SNP [dm6]	T	C	3.636e^-4	0.755	UPSTREAM fusl INTRON fusl
2L	18014473	2L_18014473_SNP [dm3] 2L_18014473_SNP [dm6]	C	T	3.644e^-4	0.755	INTRON rdo	regulatory region REDfly_CRMs
3R	20913300	3R_20913300_SNP [dm3] 3R_25087578_SNP [dm6]	T	A	3.647e^-4	0.755	INTERGENIC	transposable element FlyBase
3R	9961938	3R_9961938_SNP [dm3] 3R_14136216_SNP [dm6]	G	A	3.650e^-4	0.755	INTERGENIC
2L	19968158	2L_19968158_INS [dm3] 2L_19968158_INS [dm6]	T	TT	3.652e^-4	0.755	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
2R	14589540	2R_14589540_SNP [dm3] 2R_18702035_SNP [dm6]	C	T	3.660e^-4	0.755	NON_SYNONYMOUS_CODING Sik3 DOWNSTREAM Sik3 INTRON Sik3
3R	8570463	3R_8570463_DEL [dm3] 3R_12744741_DEL [dm6]	AA	A	3.663e^-4	0.755	INTERGENIC
3R	23139433	3R_23139433_SNP [dm3] 3R_27313711_SNP [dm6]	C	T	3.664e^-4	0.755	SYNONYMOUS_CODING CG3339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16428836	2L_16428836_SNP [dm3] 2L_16428836_SNP [dm6]	A	G	3.664e^-4	0.755	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19000115	2R_19000115_SNP [dm3] 2R_23112592_SNP [dm6]	A	G	3.669e^-4	0.755	DOWNSTREAM CR44782 INTERGENIC
2L	16765997	2L_16765997_SNP [dm3] 2L_16765997_SNP [dm6]	T	C	3.671e^-4	0.755	UPSTREAM Mhc INTERGENIC
3R	11696749	3R_11696749_SNP [dm3] 3R_15871027_SNP [dm6]	A	T	3.673e^-4	0.755	INTRON CG31183
3R	23832885	3R_23832885_SNP [dm3] 3R_28007163_SNP [dm6]	A	G	3.673e^-4	0.755	INTERGENIC
2R	14022769	2R_14022769_SNP [dm3] 2R_18135264_SNP [dm6]	G	A	3.674e^-4	0.755	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10334837	3L_10334837_SNP [dm3] 3L_10341737_SNP [dm6]	C	T	3.684e^-4	0.755	INTERGENIC
2L	16944653	2L_16944653_SNP [dm3] 2L_16944653_SNP [dm6]	C	T	3.693e^-4	0.755	DOWNSTREAM CR43053 INTERGENIC
2L	3987686	2L_3987686_SNP [dm3] 2L_3987686_SNP [dm6]	G	T	3.693e^-4	0.755	INTRON fred
3R	792861	3R_792861_SNP [dm3] 3R_4967139_SNP [dm6]	T	C	3.695e^-4	0.755	SYNONYMOUS_CODING CG1124
3R	20913069	3R_20913069_SNP [dm3] 3R_25087347_SNP [dm6]	T	C	3.696e^-4	0.755	INTERGENIC
3R	22005035	3R_22005035_SNP [dm3] 3R_26179313_SNP [dm6]	A	T	3.698e^-4	0.755	INTRON CG31323
3R	25441224	3R_25441224_SNP [dm3] 3R_29615502_SNP [dm6]	T	C	3.702e^-4	0.755	INTRON alph
2R	14194348	2R_14194348_SNP [dm3] 2R_18306843_SNP [dm6]	C	T	3.703e^-4	0.755	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3748443	2L_3748443_SNP [dm3] 2L_3748443_SNP [dm6]	C	T	3.706e^-4	0.755	INTRON CG10019
3L	5473055	3L_5473055_DEL [dm3] 3L_5479955_DEL [dm6]	TTTTTT	CGATG	3.707e^-4	0.755	INTRON CG4835	TF binding site mE1_TFBS_inv
2L	12260860	2L_12260860_SNP [dm3] 2L_12260860_SNP [dm6]	G	A	3.721e^-4	0.755	INTRON aret
3R	12413654	3R_12413654_SNP [dm3] 3R_16587932_SNP [dm6]	T	C	3.729e^-4	0.755	INTERGENIC
3L	5230642	3L_5230642_SNP [dm3] 3L_5237542_SNP [dm6]	T	C	3.730e^-4	0.755	DOWNSTREAM CG4669 INTRON shep
3R	802936	3R_802936_SNP [dm3] 3R_4977214_SNP [dm6]	T	G	3.730e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10639574	2L_10639574_SNP [dm3] 2L_10639574_SNP [dm6]	T	A	3.736e^-4	0.755	UPSTREAM CG31872 EXON CR45351
3L	17222414	3L_17222414_SNP [dm3] 3L_17229314_SNP [dm6]	T	A	3.743e^-4	0.755	INTRON Rbp6
2L	12405090	2L_12405090_DEL [dm3] 2L_12405090_DEL [dm6]	AA	A	3.744e^-4	0.755	UPSTREAM vir-1 INTRON vir-1
3L	14227643	3L_14227643_SNP [dm3] 3L_14234543_SNP [dm6]	A	G	3.749e^-4	0.755	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
3R	11459627	3R_11459627_SNP [dm3] 3R_15633905_SNP [dm6]	C	T	3.749e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10590928	3R_10590928_SNP [dm3] 3R_14765206_SNP [dm6]	T	A	3.752e^-4	0.755	INTRON jvl
3R	7745424	3R_7745424_SNP [dm3] 3R_11919702_SNP [dm6]	G	A	3.752e^-4	0.755	INTRON Cad87A
2R	18596498	2R_18596498_SNP [dm3] 2R_22708993_SNP [dm6]	C	A	3.759e^-4	0.755	UPSTREAM CR43735 INTRON CG30275
2L	7160780	2L_7160780_SNP [dm3] 2L_7160780_SNP [dm6]	G	A	3.761e^-4	0.755	INTERGENIC
2L	10639617	2L_10639617_SNP [dm3] 2L_10639617_SNP [dm6]	C	G	3.764e^-4	0.755	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
2L	3756374	2L_3756374_SNP [dm3] 2L_3756374_SNP [dm6]	A	G	3.768e^-4	0.755	UPSTREAM CG43707 INTERGENIC
3R	5305333	3R_5305333_SNP [dm3] 3R_9479611_SNP [dm6]	T	C	3.775e^-4	0.755	INTRON CG16779
3R	5898380	3R_5898380_SNP [dm3] 3R_10072658_SNP [dm6]	C	G	3.775e^-4	0.755	INTRON nerfin-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2588050	2L_2588050_SNP [dm3] 2L_2588050_SNP [dm6]	T	C	3.775e^-4	0.755	INTERGENIC
2R	18282835	2R_18282835_SNP [dm3] 2R_22395330_SNP [dm6]	A	T	3.782e^-4	0.755	INTRON babos
2R	4573547	2R_4573547_SNP [dm3] 2R_8686042_SNP [dm6]	T	C	3.791e^-4	0.755	INTERGENIC
2R	11877984	2R_11877984_SNP [dm3] 2R_15990479_SNP [dm6]	G	A	3.797e^-4	0.755	SYNONYMOUS_CODING CG8314 UPSTREAM Strn-Mlck DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13857172	3R_13857172_SNP [dm3] 3R_18031450_SNP [dm6]	G	A	3.797e^-4	0.755	INTERGENIC
2R	19964282	2R_19964282_SNP [dm3] 2R_24076759_SNP [dm6]	T	A	3.799e^-4	0.755	SYNONYMOUS_CODING Mlp60A DOWNSTREAM Mlp60A	TF binding site mE1_TFBS_cad
3L	1433442	3L_1433442_SNP [dm3] 3L_1433442_SNP [dm6]	T	C	3.805e^-4	0.755	DOWNSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6303515	3L_6303515_SNP [dm3] 3L_6310415_SNP [dm6]	A	G	3.811e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6343070	2R_6343070_SNP [dm3] 2R_10455565_SNP [dm6]	A	G	3.822e^-4	0.755	SYNONYMOUS_CODING Cyp49a1 INTRON Galphao
3R	4306247	3R_4306247_SNP [dm3] 3R_8480525_SNP [dm6]	G	A	3.823e^-4	0.755	INTERGENIC
X	5882544	X_5882544_SNP [dm3] X_5988511_SNP [dm6]	G	A	3.826e^-4	0.755	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	19691862	3L_19691862_SNP [dm3] 3L_19698762_SNP [dm6]	A	G	3.826e^-4	0.755	INTERGENIC
2L	5336188	2L_5336188_INS [dm3] 2L_5336188_INS [dm6]	G	GG	3.830e^-4	0.755	UPSTREAM fusl INTRON fusl
3L	20875540	3L_20875540_SNP [dm3] 3L_20882440_SNP [dm6]	T	C	3.830e^-4	0.755	INTRON CG32432
2L	3945038	2L_3945038_SNP [dm3] 2L_3945038_SNP [dm6]	C	A	3.830e^-4	0.755	INTRON fred
2L	14335709	2L_14335709_SNP [dm3] 2L_14335709_SNP [dm6]	C	T	3.831e^-4	0.755	INTRON CG33090
2R	11878640	2R_11878640_SNP [dm3] 2R_15991135_SNP [dm6]	C	A	3.834e^-4	0.755	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	13501270	2R_13501270_SNP [dm3] 2R_17613765_SNP [dm6]	A	G	3.835e^-4	0.755	INTRON CG10936
X	14108017	X_14108017_INS [dm3] X_14213984_INS [dm6]	C	CTT	3.844e^-4	0.755	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17883745	2L_17883745_SNP [dm3] 2L_17883745_SNP [dm6]	A	G	3.857e^-4	0.755	INTERGENIC
2R	18134224	2R_18134224_SNP [dm3] 2R_22246719_SNP [dm6]	A	T	3.859e^-4	0.755	INTRON dve
2L	5592373	2L_5592373_SNP [dm3] 2L_5592373_SNP [dm6]	A	T	3.860e^-4	0.755	INTERGENIC
2L	10025358	2L_10025358_SNP [dm3] 2L_10025358_SNP [dm6]	A	G	3.867e^-4	0.755	INTERGENIC
2L	7093392	2L_7093392_SNP [dm3] 2L_7093392_SNP [dm6]	G	A	3.871e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4924321	X_4924321_SNP [dm3] X_5030288_SNP [dm6]	C	G	3.883e^-4	0.755	INTRON CR44833
2L	15335350	2L_15335350_SNP [dm3] 2L_15335350_SNP [dm6]	C	T	3.884e^-4	0.755	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da
2R	10336865	2R_10336865_SNP [dm3] 2R_14449360_SNP [dm6]	C	G	3.888e^-4	0.755	INTRON Oaz	TF binding site mE1_TFBS_Trl
3R	26679655	3R_26679655_SNP [dm3] 3R_30853933_SNP [dm6]	C	T	3.889e^-4	0.755	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14508677	3R_14508677_SNP [dm3] 3R_18682955_SNP [dm6]	A	G	3.889e^-4	0.755	SYNONYMOUS_CODING CG7708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14580761	3L_14580761_SNP [dm3] 3L_14587661_SNP [dm6]	C	A	3.891e^-4	0.755	INTRON HGTX
2R	14635016	2R_14635016_DEL [dm3] 2R_18747511_DEL [dm6]	ACA	A	3.905e^-4	0.755	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	12261118	2L_12261118_SNP [dm3] 2L_12261118_SNP [dm6]	G	A	3.912e^-4	0.755	INTRON aret	insulator Insulator_Class_II.mE01
2R	6343086	2R_6343086_SNP [dm3] 2R_10455581_SNP [dm6]	T	C	3.913e^-4	0.755	SYNONYMOUS_CODING Cyp49a1 INTRON Galphao
3R	27112484	3R_27112484_SNP [dm3] 3R_31286762_SNP [dm6]	T	C	3.915e^-4	0.755	INTERGENIC
3R	19123309	3R_19123309_SNP [dm3] 3R_23297587_SNP [dm6]	G	A	3.920e^-4	0.755	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9827792	2R_9827792_SNP [dm3] 2R_13940287_SNP [dm6]	T	G	3.924e^-4	0.755	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8804527	3L_8804527_SNP [dm3] 3L_8811427_SNP [dm6]	T	A	3.927e^-4	0.755	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20682944	3R_20682944_SNP [dm3] 3R_24857222_SNP [dm6]	T	A	3.936e^-4	0.755	SYNONYMOUS_CODING CG10899 START_GAINED CG10899 UTR_5_PRIME CG10899 UPSTREAM HdacX DOWNSTREAM ppk22
2L	12407108	2L_12407108_SNP [dm3] 2L_12407108_SNP [dm6]	A	C	3.940e^-4	0.755	UTR_3_PRIME vir-1 INTRON vir-1
3L	18256574	3L_18256574_SNP [dm3] 3L_18263474_SNP [dm6]	T	C	3.940e^-4	0.755	INTERGENIC
X	11273448	X_11273448_SNP [dm3] X_11379415_SNP [dm6]	C	T	3.945e^-4	0.755	INTRON dlg1
X	21202970	X_21202970_SNP [dm3] X_21331943_SNP [dm6]	T	G	3.946e^-4	0.755	UTR_3_PRIME tty DOWNSTREAM tty
2L	1714959	2L_1714959_SNP [dm3] 2L_1714959_SNP [dm6]	A	G	3.955e^-4	0.755	INTRON frtz	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1334343	3L_1334343_SNP [dm3] 3L_1334343_SNP [dm6]	A	T	3.958e^-4	0.755	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	5902091	2L_5902091_SNP [dm3] 2L_5902091_SNP [dm6]	G	C	3.959e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17933098	2L_17933098_SNP [dm3] 2L_17933098_SNP [dm6]	G	A	3.960e^-4	0.755	INTERGENIC
3L	7111320	3L_7111320_SNP [dm3] 3L_7118220_SNP [dm6]	G	A	3.961e^-4	0.755	INTRON form3
X	2670787	X_2670787_SNP [dm3] X_2776754_SNP [dm6]	C	G	3.962e^-4	0.755	INTRON kirre
3L	12700538	3L_12700538_SNP [dm3] 3L_12707438_SNP [dm6]	A	G	3.966e^-4	0.755	SYNONYMOUS_CODING mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8876773	2R_8876773_SNP [dm3] 2R_12989268_SNP [dm6]	C	G	3.977e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17896565	2R_17896565_INS [dm3] 2R_22009060_INS [dm6]	G	GATTC	3.985e^-4	0.755	INTRON CG34370
3R	10514630	3R_10514630_SNP [dm3] 3R_14688908_SNP [dm6]	T	A	3.985e^-4	0.755	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7087723	3L_7087723_SNP [dm3] 3L_7094623_SNP [dm6]	A	T	3.998e^-4	0.755	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3R	11459610	3R_11459610_SNP [dm3] 3R_15633888_SNP [dm6]	A	G	4.006e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_Kr
X	20848213	X_20848213_SNP [dm3] X_20977186_SNP [dm6]	T	C	4.006e^-4	0.755	INTERGENIC
X	12910310	X_12910310_SNP [dm3] X_13016277_SNP [dm6]	T	C	4.007e^-4	0.755	INTRON rad
3R	13852370	3R_13852370_SNP [dm3] 3R_18026648_SNP [dm6]	T	A	4.011e^-4	0.755	INTERGENIC
3L	13010848	3L_13010848_SNP [dm3] 3L_13017748_SNP [dm6]	G	A	4.013e^-4	0.755	SYNONYMOUS_CODING mRpL20 UPSTREAM ste14 DOWNSTREAM CG11267 & 1 other
3L	16691072	3L_16691072_DEL [dm3] 3L_16697972_DEL [dm6]	AA	A	4.019e^-4	0.755	DOWNSTREAM CR45179 INTRON Lasp & 1 other
X	2670789	X_2670789_SNP [dm3] X_2776756_SNP [dm6]	T	A	4.021e^-4	0.755	INTRON kirre
3R	14658141	3R_14658141_SNP [dm3] 3R_18832419_SNP [dm6]	C	T	4.032e^-4	0.755	INTRON CG18208
3R	11140995	3R_11140995_SNP [dm3] 3R_15315273_SNP [dm6]	C	G	4.035e^-4	0.755	DOWNSTREAM Tm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	938565	3R_938565_SNP [dm3] 3R_5112843_SNP [dm6]	C	G	4.055e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	9963368	3R_9963368_SNP [dm3] 3R_14137646_SNP [dm6]	T	A	4.065e^-4	0.755	INTERGENIC
3L	3864121	3L_3864121_SNP [dm3] 3L_3864121_SNP [dm6]	C	T	4.071e^-4	0.755	EXON CR45379

By genomic position
Variant impact
Gene name

mn_Resp_I_Carvone phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results