DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.537e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09875

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1916 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13689804	3L_13689804_SNP [dm3] 3L_13696704_SNP [dm6]	T	A	2.263e^-7	0.256	INTRON bru-3
X	5662593	X_5662593_DEL [dm3] X_5768560_DEL [dm6]	AGATATACTTATCA...	A	4.200e^-7	0.256	INTRON CG42699 & 1 other
2L	15442424	2L_15442424_SNP [dm3] 2L_15442424_SNP [dm6]	T	A	6.126e^-7	0.256	DOWNSTREAM CR44862 INTERGENIC
X	10517809	X_10517809_SNP [dm3] X_10623776_SNP [dm6]	A	G	6.995e^-7	0.256	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2L	13753128	2L_13753128_SNP [dm3] 2L_13753128_SNP [dm6]	T	A	9.088e^-7	0.256	INTRON CR44846 & 1 other
X	4492314	X_4492314_SNP [dm3] X_4598281_SNP [dm6]	A	G	1.201e^-6	0.256	INTRON CR32773
X	4492318	X_4492318_SNP [dm3] X_4598285_SNP [dm6]	G	T	1.219e^-6	0.256	INTRON CR32773
X	4492186	X_4492186_SNP [dm3] X_4598153_SNP [dm6]	A	T	1.244e^-6	0.256	INTRON CR32773
X	4492219	X_4492219_SNP [dm3] X_4598186_SNP [dm6]	T	A	1.525e^-6	0.256	INTRON CR32773
X	4492315	X_4492315_SNP [dm3] X_4598282_SNP [dm6]	T	C	1.672e^-6	0.256	INTRON CR32773
3L	13689865	3L_13689865_SNP [dm3] 3L_13696765_SNP [dm6]	C	T	1.732e^-6	0.256	INTRON bru-3
X	4492189	X_4492189_SNP [dm3] X_4598156_SNP [dm6]	A	T	1.763e^-6	0.256	INTRON CR32773
X	4492198	X_4492198_SNP [dm3] X_4598165_SNP [dm6]	T	A	1.905e^-6	0.256	INTRON CR32773
X	4492088	X_4492088_SNP [dm3] X_4598055_SNP [dm6]	C	T	1.954e^-6	0.256	INTRON CR32773
2L	15442428	2L_15442428_DEL [dm3] 2L_15442428_DEL [dm6]	TA	C	2.102e^-6	0.256	DOWNSTREAM CR44862 INTERGENIC
X	4492353	X_4492353_INS [dm3] X_4598320_INS [dm6]	C	CTATTC	2.186e^-6	0.256	INTRON CR32773
3L	16617880	3L_16617880_SNP [dm3] 3L_16624780_SNP [dm6]	C	T	2.530e^-6	0.267	NON_SYNONYMOUS_CODING Abl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4492380	X_4492380_SNP [dm3] X_4598347_SNP [dm6]	T	A	2.558e^-6	0.267	INTRON CR32773
3L	16756990	3L_16756990_DEL [dm3] 3L_16763890_DEL [dm6]	CGC	C	3.144e^-6	0.299	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4492220	X_4492220_SNP [dm3] X_4598187_SNP [dm6]	C	G	3.299e^-6	0.299	INTRON CR32773
2R	10091065	2R_10091065_SNP [dm3] 2R_14203560_SNP [dm6]	C	G	3.343e^-6	0.299	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10091062	2R_10091062_SNP [dm3] 2R_14203557_SNP [dm6]	G	T	3.587e^-6	0.306	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4492194	X_4492194_SNP [dm3] X_4598161_SNP [dm6]	T	A	3.820e^-6	0.312	INTRON CR32773
3L	23199403	3L_23199403_SNP [dm3] 3L_23206303_SNP [dm6]	T	A	4.303e^-6	0.325	UPSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	13607868	2R_13607868_SNP [dm3] 2R_17720363_SNP [dm6]	A	G	4.388e^-6	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9946781	2L_9946781_SNP [dm3] 2L_9946781_SNP [dm6]	G	A	4.500e^-6	0.325	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15442412	2L_15442412_SNP [dm3] 2L_15442412_SNP [dm6]	G	T	4.881e^-6	0.339	DOWNSTREAM CR44862 INTERGENIC
3L	2778433	3L_2778433_SNP [dm3] 3L_2778433_SNP [dm6]	A	G	5.589e^-6	0.374	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4492151	X_4492151_SNP [dm3] X_4598118_SNP [dm6]	A	T	6.153e^-6	0.398	INTRON CR32773
3L	16267562	3L_16267562_MNP [dm3] 3L_16274462_MNP [dm6]	TTAT	CATC	6.446e^-6	0.399	DOWNSTREAM CG13066 INTERGENIC
X	4492312	X_4492312_SNP [dm3] X_4598279_SNP [dm6]	C	T	6.597e^-6	0.399	INTRON CR32773
X	4492381	X_4492381_SNP [dm3] X_4598348_SNP [dm6]	A	T	7.048e^-6	0.413	INTRON CR32773
2L	15442333	2L_15442333_SNP [dm3] 2L_15442333_SNP [dm6]	T	A	7.852e^-6	0.442	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
2L	1823253	2L_1823253_SNP [dm3] 2L_1823253_SNP [dm6]	A	C	8.006e^-6	0.442	SYNONYMOUS_CODING CG31933 DOWNSTREAM CG31664
X	4492339	X_4492339_SNP [dm3] X_4598306_SNP [dm6]	T	C	8.305e^-6	0.445	INTRON CR32773
3L	15436115	3L_15436115_SNP [dm3] 3L_15443015_SNP [dm6]	G	A	9.580e^-6	0.499	INTERGENIC
X	11119047	X_11119047_DEL [dm3] X_11225014_DEL [dm6]	CTTCTGATGC	C	1.026e^-5	0.52	CODON_DELETION CG44422 UTR_3_PRIME CG44422	TF binding site mE1_TFBS_chinmo
3L	1676146	3L_1676146_SNP [dm3] 3L_1676146_SNP [dm6]	G	T	1.216e^-5	0.6	INTRON CG7991
3L	2370943	3L_2370943_SNP [dm3] 3L_2370943_SNP [dm6]	G	A	1.287e^-5	0.609	SYNONYMOUS_CODING CG1317	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18565818	3L_18565818_SNP [dm3] 3L_18572718_SNP [dm6]	G	A	1.310e^-5	0.609	INTRON AstC-R1
X	4044206	X_4044206_INS [dm3] X_4150173_INS [dm6]	T	TCCTT	1.402e^-5	0.609	INTRON Fas2
2L	5260136	2L_5260136_SNP [dm3] 2L_5260136_SNP [dm6]	G	A	1.431e^-5	0.609	DOWNSTREAM CR44744 INTRON tkv
X	4492261	X_4492261_DEL [dm3] X_4598228_DEL [dm6]	TCGCAATAATGAAAGTGTAT...	T	1.490e^-5	0.609	INTRON CR32773
3L	16267567	3L_16267567_INS [dm3] 3L_16274467_INS [dm6]	G	CGCCCA	1.525e^-5	0.609	DOWNSTREAM CG13066 INTERGENIC
3R	10342578	3R_10342578_DEL [dm3] 3R_14516856_DEL [dm6]	ATGACGTCACCGTA...	A	1.546e^-5	0.609	UPSTREAM CG34273 INTRON Pde6
X	4492364	X_4492364_SNP [dm3] X_4598331_SNP [dm6]	T	A	1.587e^-5	0.609	INTRON CR32773
2L	2205660	2L_2205660_DEL [dm3] 2L_2205660_DEL [dm6]	AA	A	1.592e^-5	0.609	DOWNSTREAM CG33124 INTRON CG31668
3L	23199405	3L_23199405_SNP [dm3] 3L_23206305_SNP [dm6]	A	T	1.597e^-5	0.609	UPSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	15481411	2L_15481411_SNP [dm3] 2L_15481411_SNP [dm6]	G	T	1.614e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15481424	2L_15481424_SNP [dm3] 2L_15481424_SNP [dm6]	A	G	1.624e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10511282	X_10511282_SNP [dm3] X_10617249_SNP [dm6]	T	G	1.711e^-5	0.629	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	1.774e^-5	0.64	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2R	2599145	2R_2599145_SNP [dm3] 2R_6711640_SNP [dm6]	T	C	1.824e^-5	0.646	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	18722020	2L_18722020_SNP [dm3] 2L_18722020_SNP [dm6]	A	G	2.021e^-5	0.702	INTRON CG10348
3R	8438046	3R_8438046_SNP [dm3] 3R_12612324_SNP [dm6]	G	T	2.138e^-5	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	6564802	3L_6564802_SNP [dm3] 3L_6571702_SNP [dm6]	C	T	2.253e^-5	0.745	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13214956	3L_13214956_SNP [dm3] 3L_13221856_SNP [dm6]	G	A	2.308e^-5	0.745	INTERGENIC
3L	9322308	3L_9322308_SNP [dm3] 3L_9329208_SNP [dm6]	T	C	2.342e^-5	0.745	INTERGENIC
3L	7948804	3L_7948804_SNP [dm3] 3L_7955704_SNP [dm6]	A	G	2.457e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10514856	X_10514856_SNP [dm3] X_10620823_SNP [dm6]	G	T	2.475e^-5	0.745	UPSTREAM CG43347 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18982148	X_18982148_SNP [dm3] X_19088115_SNP [dm6]	C	T	2.543e^-5	0.745	INTERGENIC
3L	2778439	3L_2778439_SNP [dm3] 3L_2778439_SNP [dm6]	A	G	2.572e^-5	0.745	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15442354	2L_15442354_SNP [dm3] 2L_15442354_SNP [dm6]	A	T	2.576e^-5	0.745	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10215153	3R_10215153_SNP [dm3] 3R_14389431_SNP [dm6]	G	A	2.601e^-5	0.745	INTERGENIC
3L	2370268	3L_2370268_SNP [dm3] 3L_2370268_SNP [dm6]	C	A	2.632e^-5	0.745	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13239313	2L_13239313_SNP [dm3] 2L_13239313_SNP [dm6]	T	C	2.634e^-5	0.745	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC
3R	8886063	3R_8886063_INS [dm3] 3R_13060341_INS [dm6]	A	ACTGATACA	2.700e^-5	0.745	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	15442449	2L_15442449_SNP [dm3] 2L_15442449_SNP [dm6]	C	T	2.723e^-5	0.745	DOWNSTREAM CR44862 INTERGENIC
2R	19527293	2R_19527293_SNP [dm3] 2R_23639770_SNP [dm6]	G	A	2.868e^-5	0.745	UPSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7622192	2R_7622192_SNP [dm3] 2R_11734687_SNP [dm6]	A	T	2.871e^-5	0.745	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15442464	2L_15442464_INS [dm3] 2L_15442464_INS [dm6]	T	TGTATT	2.879e^-5	0.745	DOWNSTREAM CR44862 INTERGENIC
X	22045845	X_22045845_SNP [dm3] X_22644009_SNP [dm6]	G	C	2.880e^-5	0.745	INTERGENIC
2R	6807363	2R_6807363_SNP [dm3] 2R_10919858_SNP [dm6]	C	T	2.933e^-5	0.745	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10170009	3L_10170009_SNP [dm3] 3L_10176909_SNP [dm6]	T	A	2.945e^-5	0.745	INTRON dpr10
3R	26151369	3R_26151369_INS [dm3] 3R_30325647_INS [dm6]	T	TC	2.979e^-5	0.745	INTRON hdc	TF binding site mE1_TFBS_chinmo
3R	7010695	3R_7010695_SNP [dm3] 3R_11184973_SNP [dm6]	G	T	3.068e^-5	0.757	INTERGENIC
X	13321114	X_13321114_SNP [dm3] X_13427081_SNP [dm6]	T	A	3.148e^-5	0.757	INTERGENIC
2R	5282557	2R_5282557_SNP [dm3] 2R_9395052_SNP [dm6]	A	G	3.150e^-5	0.757	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad
2L	1823297	2L_1823297_SNP [dm3] 2L_1823297_SNP [dm6]	G	A	3.258e^-5	0.773	UTR_5_PRIME CG31933 DOWNSTREAM CG31664
3L	10775071	3L_10775071_SNP [dm3] 3L_10781971_SNP [dm6]	C	T	3.326e^-5	0.774	INTERGENIC
3L	7948889	3L_7948889_SNP [dm3] 3L_7955789_SNP [dm6]	A	G	3.345e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3795215	3L_3795215_SNP [dm3] 3L_3795215_SNP [dm6]	A	G	3.556e^-5	0.803	UPSTREAM CG32264 INTRON CG32264
2R	11840101	2R_11840101_SNP [dm3] 2R_15952596_SNP [dm6]	A	G	3.669e^-5	0.803	UPSTREAM Strn-Mlck INTRON Strn-Mlck
3L	2572386	3L_2572386_SNP [dm3] 3L_2572386_SNP [dm6]	C	T	3.671e^-5	0.803	INTRON msn
3R	7998700	3R_7998700_SNP [dm3] 3R_12172978_SNP [dm6]	T	A	3.689e^-5	0.803	INTERGENIC
2R	17315834	2R_17315834_SNP [dm3] 2R_21428329_SNP [dm6]	C	T	3.707e^-5	0.803	INTRON Sdc
2R	6807364	2R_6807364_SNP [dm3] 2R_10919859_SNP [dm6]	G	A	3.815e^-5	0.803	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10421699	3R_10421699_SNP [dm3] 3R_14595977_SNP [dm6]	C	T	3.844e^-5	0.803	UPSTREAM stumps INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3365102	2L_3365102_SNP [dm3] 2L_3365102_SNP [dm6]	T	C	3.894e^-5	0.803	UTR_5_PRIME CG34394 INTRON CG34394
3R	11516157	3R_11516157_SNP [dm3] 3R_15690435_SNP [dm6]	C	A	3.912e^-5	0.803	UTR_3_PRIME pxb
2L	9718583	2L_9718583_SNP [dm3] 2L_9718583_SNP [dm6]	C	T	3.929e^-5	0.803	INTRON Nckx30C
2L	11404834	2L_11404834_DEL [dm3] 2L_11404834_DEL [dm6]	TTGAATATATATTTATTAGA...	AC	3.940e^-5	0.803	INTERGENIC	regulatory region REDfly_CRMs
X	4492357	X_4492357_SNP [dm3] X_4598324_SNP [dm6]	G	T	4.067e^-5	0.82	INTRON CR32773
3L	2681909	3L_2681909_SNP [dm3] 3L_2681909_SNP [dm6]	A	G	4.122e^-5	0.823	INTRON Fife
X	10511180	X_10511180_SNP [dm3] X_10617147_SNP [dm6]	G	A	4.228e^-5	0.835	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	17338029	2R_17338029_SNP [dm3] 2R_21450524_SNP [dm6]	A	T	4.408e^-5	0.837	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12362316	2L_12362316_SNP [dm3] 2L_12362316_SNP [dm6]	G	C	4.466e^-5	0.837	INTRON bru-2
3L	16365098	3L_16365098_SNP [dm3] 3L_16371998_SNP [dm6]	G	A	4.467e^-5	0.837	UTR_3_PRIME roq DOWNSTREAM roq
3L	7948934	3L_7948934_SNP [dm3] 3L_7955834_SNP [dm6]	C	A	4.494e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13911297	2L_13911297_SNP [dm3] 2L_13911297_SNP [dm6]	C	G	4.505e^-5	0.837	UPSTREAM Acyp INTRON Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16414555	2L_16414555_SNP [dm3] 2L_16414555_SNP [dm6]	G	A	4.566e^-5	0.837	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9797435	3R_9797435_SNP [dm3] 3R_13971713_SNP [dm6]	A	C	4.582e^-5	0.837	START_GAINED rdx UTR_5_PRIME rdx UPSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	592595	2R_592595_SNP [dm3] 2R_4705090_SNP [dm6]	T	A	4.720e^-5	0.837	INTRON Nipped-B
3L	2779484	3L_2779484_SNP [dm3] 3L_2779484_SNP [dm6]	A	G	4.770e^-5	0.837	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15474489	2L_15474489_SNP [dm3] 2L_15474489_SNP [dm6]	T	C	4.827e^-5	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15442400	2L_15442400_SNP [dm3] 2L_15442400_SNP [dm6]	A	T	4.902e^-5	0.837	DOWNSTREAM CR44862 INTERGENIC
3R	10215247	3R_10215247_SNP [dm3] 3R_14389525_SNP [dm6]	G	C	4.993e^-5	0.837	INTERGENIC
X	22045854	X_22045854_SNP [dm3] X_22644018_SNP [dm6]	C	G	4.999e^-5	0.837	INTERGENIC
3L	12534591	3L_12534591_DEL [dm3] 3L_12541491_DEL [dm6]	TAAAAC	T	5.065e^-5	0.837	UPSTREAM CR43612 INTRON sowah
2L	1823259	2L_1823259_SNP [dm3] 2L_1823259_SNP [dm6]	T	C	5.071e^-5	0.837	SYNONYMOUS_CODING CG31933 DOWNSTREAM CG31664
3L	23199445	3L_23199445_DEL [dm3] 3L_23206345_DEL [dm6]	TA	T	5.111e^-5	0.837	UPSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	13937389	3R_13937389_SNP [dm3] 3R_18111667_SNP [dm6]	T	C	5.134e^-5	0.837	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5282581	2R_5282581_SNP [dm3] 2R_9395076_SNP [dm6]	G	C	5.148e^-5	0.837	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad
3L	9322323	3L_9322323_SNP [dm3] 3L_9329223_SNP [dm6]	A	T	5.161e^-5	0.837	INTERGENIC
3R	9429465	3R_9429465_SNP [dm3] 3R_13603743_SNP [dm6]	G	A	5.173e^-5	0.837	INTERGENIC
3R	7998787	3R_7998787_SNP [dm3] 3R_12173065_SNP [dm6]	T	C	5.176e^-5	0.837	INTERGENIC
X	22045918	X_22045918_SNP [dm3] X_22644082_SNP [dm6]	T	A	5.269e^-5	0.842	INTERGENIC
3R	17976766	3R_17976766_SNP [dm3] 3R_22151044_SNP [dm6]	A	C	5.294e^-5	0.842	INTRON SKIP
3R	10215341	3R_10215341_SNP [dm3] 3R_14389619_SNP [dm6]	T	C	5.388e^-5	0.844	INTERGENIC
2R	15552388	2R_15552388_SNP [dm3] 2R_19664883_SNP [dm6]	T	A	5.437e^-5	0.844	DOWNSTREAM hrg INTRON hrg
2L	2798328	2L_2798328_SNP [dm3] 2L_2798328_SNP [dm6]	G	A	5.470e^-5	0.844	DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	10670161	2R_10670161_SNP [dm3] 2R_14782656_SNP [dm6]	C	T	5.557e^-5	0.844	INTRON kn
2L	9541654	2L_9541654_SNP [dm3] 2L_9541654_SNP [dm6]	A	G	5.628e^-5	0.844	SYNONYMOUS_CODING CG17855
3R	12956070	3R_12956070_SNP [dm3] 3R_17130348_SNP [dm6]	G	A	5.669e^-5	0.844	SYNONYMOUS_CODING CG17475 DOWNSTREAM CG4053	TF binding site mE1_TFBS_cad
2L	15442349	2L_15442349_SNP [dm3] 2L_15442349_SNP [dm6]	T	G	5.671e^-5	0.844	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15442466	2L_15442466_SNP [dm3] 2L_15442466_SNP [dm6]	C	T	5.700e^-5	0.844	DOWNSTREAM CR44862 INTERGENIC
3L	16270249	3L_16270249_INS [dm3] 3L_16277149_INS [dm6]	A	TGGTGCAACCAC...	5.713e^-5	0.844	UPSTREAM CG13065 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16355039	3R_16355039_SNP [dm3] 3R_20529317_SNP [dm6]	A	G	5.796e^-5	0.845	INTERGENIC
2L	18849559	2L_18849559_SNP [dm3] 2L_18849559_SNP [dm6]	C	T	5.809e^-5	0.845	INTRON CG17321
3L	24002482	3L_24002482_SNP [dm3] 3L_24009382_SNP [dm6]	G	A	5.896e^-5	0.851	DOWNSTREAM CR40053 INTERGENIC
3L	9322452	3L_9322452_SNP [dm3] 3L_9329352_SNP [dm6]	T	G	6.267e^-5	0.867	INTERGENIC
3L	2281570	3L_2281570_SNP [dm3] 3L_2281570_SNP [dm6]	G	A	6.342e^-5	0.867	INTERGENIC
2R	19352433	2R_19352433_SNP [dm3] 2R_23464910_SNP [dm6]	C	T	6.352e^-5	0.867	INTRON CG43795
3L	2174004	3L_2174004_SNP [dm3] 3L_2174004_SNP [dm6]	A	G	6.409e^-5	0.867	INTRON CG15820	TF binding site mE1_TFBS_cad
2L	15442343	2L_15442343_SNP [dm3] 2L_15442343_SNP [dm6]	T	C	6.412e^-5	0.867	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2681908	3L_2681908_SNP [dm3] 3L_2681908_SNP [dm6]	G	A	6.449e^-5	0.867	INTRON Fife
3R	16841042	3R_16841042_DEL [dm3] 3R_21015320_DEL [dm6]	GATCGAATACCACATACATA...	G	6.478e^-5	0.867	UTR_3_PRIME Calx UPSTREAM CG5697 DOWNSTREAM Calx
X	12854142	X_12854142_SNP [dm3] X_12960109_SNP [dm6]	A	G	6.502e^-5	0.867	NON_SYNONYMOUS_CODING CG32642
2R	2598134	2R_2598134_SNP [dm3] 2R_6710629_SNP [dm6]	G	A	6.515e^-5	0.867	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	2598215	2R_2598215_SNP [dm3] 2R_6710710_SNP [dm6]	T	C	6.538e^-5	0.867	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	19832902	3R_19832902_SNP [dm3] 3R_24007180_SNP [dm6]	A	C	6.635e^-5	0.867	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	7999418	3R_7999418_SNP [dm3] 3R_12173696_SNP [dm6]	T	C	6.650e^-5	0.867	INTERGENIC
2R	767383	2R_767383_SNP [dm3] 2R_4879878_SNP [dm6]	T	G	6.694e^-5	0.867	INTERGENIC
3L	2459915	3L_2459915_SNP [dm3] 3L_2459915_SNP [dm6]	A	T	6.707e^-5	0.867	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
3L	18565823	3L_18565823_SNP [dm3] 3L_18572723_SNP [dm6]	T	C	6.857e^-5	0.867	INTRON AstC-R1
3R	13699955	3R_13699955_SNP [dm3] 3R_17874233_SNP [dm6]	G	T	7.049e^-5	0.867	UTR_3_PRIME Rim DOWNSTREAM Rim
3R	12218781	3R_12218781_SNP [dm3] 3R_16393059_SNP [dm6]	A	T	7.094e^-5	0.867	INTRON ss	regulatory region REDfly_CRMs
3R	10169087	3R_10169087_SNP [dm3] 3R_14343365_SNP [dm6]	C	A	7.140e^-5	0.867	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4172672	3L_4172672_SNP [dm3] 3L_4172672_SNP [dm6]	T	C	7.142e^-5	0.867	SYNONYMOUS_CODING Ero1L
X	8325726	X_8325726_SNP [dm3] X_8431693_SNP [dm6]	A	C	7.156e^-5	0.867	UTR_3_PRIME Trf2
2L	16414497	2L_16414497_INS [dm3] 2L_16414497_INS [dm6]	A	AA	7.194e^-5	0.867	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2R	2839384	2R_2839384_SNP [dm3] 2R_6951879_SNP [dm6]	C	T	7.244e^-5	0.867	INTRON mim & 2 others
3R	9653292	3R_9653292_INS [dm3] 3R_13827570_INS [dm6]	T	TATTTTATATTT...	7.298e^-5	0.867	UPSTREAM CR43300 INTRON Mst87F
3L	10942046	3L_10942046_SNP [dm3] 3L_10948946_SNP [dm6]	T	A	7.329e^-5	0.867	INTERGENIC
X	2489485	X_2489485_SNP [dm3] X_2595452_SNP [dm6]	G	A	7.349e^-5	0.867	INTRON egh
2L	13911210	2L_13911210_SNP [dm3] 2L_13911210_SNP [dm6]	A	G	7.398e^-5	0.867	NON_SYNONYMOUS_CODING Ance-2 UPSTREAM Acyp	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	15552574	2R_15552574_SNP [dm3] 2R_19665069_SNP [dm6]	A	G	7.651e^-5	0.867	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	4003445	3L_4003445_SNP [dm3] 3L_4003445_SNP [dm6]	G	A	7.698e^-5	0.867	UPSTREAM CG14985 INTERGENIC
2R	18061467	2R_18061467_SNP [dm3] 2R_22173962_SNP [dm6]	A	T	7.736e^-5	0.867	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10174970	3L_10174970_SNP [dm3] 3L_10181870_SNP [dm6]	G	C	7.745e^-5	0.867	INTRON dpr10
3L	1688921	3L_1688921_SNP [dm3] 3L_1688921_SNP [dm6]	C	G	7.791e^-5	0.867	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	15760381	3L_15760381_SNP [dm3] 3L_15767281_SNP [dm6]	A	C	7.973e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	1673955	3L_1673955_SNP [dm3] 3L_1673955_SNP [dm6]	T	A	7.997e^-5	0.867	UPSTREAM CG7991 INTERGENIC
2L	12413451	2L_12413451_SNP [dm3] 2L_12413451_SNP [dm6]	C	T	8.019e^-5	0.867	INTRON vir-1
X	13452947	X_13452947_SNP [dm3] X_13558914_SNP [dm6]	A	T	8.215e^-5	0.867	INTERGENIC
3L	2174026	3L_2174026_SNP [dm3] 3L_2174026_SNP [dm6]	T	A	8.217e^-5	0.867	INTRON CG15820	TF binding site mE1_TFBS_cad
2R	4105076	2R_4105076_SNP [dm3] 2R_8217571_SNP [dm6]	C	G	8.224e^-5	0.867	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6292456	3L_6292456_SNP [dm3] 3L_6299356_SNP [dm6]	A	G	8.271e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7010675	3R_7010675_SNP [dm3] 3R_11184953_SNP [dm6]	G	A	8.301e^-5	0.867	INTERGENIC
2L	3711286	2L_3711286_SNP [dm3] 2L_3711286_SNP [dm6]	T	C	8.318e^-5	0.867	SYNONYMOUS_CODING cutlet DOWNSTREAM CG31955	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	10511122	X_10511122_INS [dm3] X_10617089_INS [dm6]	G	GTTGCTG	8.336e^-5	0.867	CODON_INSERTION CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	19560125	3R_19560125_SNP [dm3] 3R_23734403_SNP [dm6]	A	G	8.369e^-5	0.867	UPSTREAM Rpn9 INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2174012	3L_2174012_INS [dm3] 3L_2174012_INS [dm6]	A	AAGT	8.470e^-5	0.867	INTRON CG15820	TF binding site mE1_TFBS_cad
3L	2174014	3L_2174014_DEL [dm3] 3L_2174014_DEL [dm6]	TGA	T	8.470e^-5	0.867	INTRON CG15820	TF binding site mE1_TFBS_cad
2L	7208784	2L_7208784_SNP [dm3] 2L_7208784_SNP [dm6]	C	T	8.488e^-5	0.867	INTRON CG13784
2R	5610828	2R_5610828_SNP [dm3] 2R_9723323_SNP [dm6]	C	T	8.516e^-5	0.867	INTRON sqa
2R	5258553	2R_5258553_SNP [dm3] 2R_9371048_SNP [dm6]	A	G	8.706e^-5	0.867	INTRON CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8568256	2L_8568256_SNP [dm3] 2L_8568256_SNP [dm6]	G	A	8.713e^-5	0.867	INTRON Sema-1a
3R	16840364	3R_16840364_INS [dm3] 3R_21014642_INS [dm6]	A	AA	8.718e^-5	0.867	UTR_3_PRIME Calx DOWNSTREAM Calx
2R	10543259	2R_10543259_SNP [dm3] 2R_14655754_SNP [dm6]	A	C	8.722e^-5	0.867	INTERGENIC
2R	13310602	2R_13310602_SNP [dm3] 2R_17423097_SNP [dm6]	C	T	8.755e^-5	0.867	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10169431	3L_10169431_SNP [dm3] 3L_10176331_SNP [dm6]	C	A	8.761e^-5	0.867	INTRON dpr10
2L	11404926	2L_11404926_SNP [dm3] 2L_11404926_SNP [dm6]	G	A	8.764e^-5	0.867	INTERGENIC	regulatory region REDfly_CRMs
2L	13816086	2L_13816086_SNP [dm3] 2L_13816086_SNP [dm6]	T	G	8.768e^-5	0.867	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4172809	3L_4172809_SNP [dm3] 3L_4172809_SNP [dm6]	T	C	8.806e^-5	0.867	SYNONYMOUS_CODING Ero1L
2L	8193487	2L_8193487_SNP [dm3] 2L_8193487_SNP [dm6]	A	C	8.855e^-5	0.867	UTR_3_PRIME CG8475 INTRON CG8475
3L	3795188	3L_3795188_SNP [dm3] 3L_3795188_SNP [dm6]	T	A	8.857e^-5	0.867	UPSTREAM CG32264 INTRON CG32264
2L	13814633	2L_13814633_SNP [dm3] 2L_13814633_SNP [dm6]	G	A	8.867e^-5	0.867	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14003141	2L_14003141_SNP [dm3] 2L_14003141_SNP [dm6]	G	A	8.920e^-5	0.867	INTERGENIC
3L	4398146	3L_4398146_SNP [dm3] 3L_4398146_SNP [dm6]	A	C	8.972e^-5	0.867	INTRON slow
X	4622143	X_4622143_SNP [dm3] X_4728110_SNP [dm6]	A	C	8.993e^-5	0.867	UTR_3_PRIME Proc-R
3L	24044188	3L_24044188_SNP [dm3] 3L_24051088_SNP [dm6]	G	A	9.030e^-5	0.867	INTERGENIC
3L	2780994	3L_2780994_SNP [dm3] 3L_2780994_SNP [dm6]	T	C	9.061e^-5	0.867	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	16414347	2L_16414347_SNP [dm3] 2L_16414347_SNP [dm6]	C	A	9.073e^-5	0.867	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2L	2263254	2L_2263254_SNP [dm3] 2L_2263254_SNP [dm6]	T	C	9.124e^-5	0.867	UPSTREAM CG4270 DOWNSTREAM CG34049 INTERGENIC
2L	19810581	2L_19810581_SNP [dm3] 2L_19810581_SNP [dm6]	T	A	9.141e^-5	0.867	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16037177	3R_16037177_SNP [dm3] 3R_20211455_SNP [dm6]	A	G	9.230e^-5	0.867	SYNONYMOUS_CODING Nlg4	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	16756972	3L_16756972_SNP [dm3] 3L_16763872_SNP [dm6]	C	T	9.314e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24761527	3R_24761527_SNP [dm3] 3R_28935805_SNP [dm6]	G	T	9.362e^-5	0.867	INTRON CG14521
3L	2174005	3L_2174005_SNP [dm3] 3L_2174005_SNP [dm6]	A	T	9.435e^-5	0.867	INTRON CG15820	TF binding site mE1_TFBS_cad
2R	6807380	2R_6807380_SNP [dm3] 2R_10919875_SNP [dm6]	G	A	9.453e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
X	6141133	X_6141133_SNP [dm3] X_6247100_SNP [dm6]	G	A	9.472e^-5	0.867	SYNONYMOUS_CODING Rbcn-3A	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12091125	2R_12091125_SNP [dm3] 2R_16203620_SNP [dm6]	A	T	9.504e^-5	0.867	UTR_3_PRIME mrj UPSTREAM shark
X	22045872	X_22045872_DEL [dm3] X_22644036_DEL [dm6]	TATGT	T	9.572e^-5	0.867	INTERGENIC
3L	18559148	3L_18559148_SNP [dm3] 3L_18566048_SNP [dm6]	C	A	9.615e^-5	0.867	INTRON AstC-R1
2L	16414275	2L_16414275_SNP [dm3] 2L_16414275_SNP [dm6]	C	T	9.735e^-5	0.867	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2R	17937725	2R_17937725_SNP [dm3] 2R_22050220_SNP [dm6]	T	G	9.739e^-5	0.867	INTERGENIC
3L	2173992	3L_2173992_DEL [dm3] 3L_2173992_DEL [dm6]	ATA	A	9.767e^-5	0.867	INTRON CG15820	TF binding site mE1_TFBS_cad
3R	12912980	3R_12912980_SNP [dm3] 3R_17087258_SNP [dm6]	G	T	9.789e^-5	0.867	SYNONYMOUS_CODING GckIII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13821899	2L_13821899_SNP [dm3] 2L_13821899_SNP [dm6]	G	A	9.808e^-5	0.867	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15073690	3L_15073690_INS [dm3] 3L_15080590_INS [dm6]	A	ATTTA	9.848e^-5	0.867	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	22896269	3R_22896269_SNP [dm3] 3R_27070547_SNP [dm6]	T	C	9.896e^-5	0.867	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5263393	X_5263393_SNP [dm3] X_5369360_SNP [dm6]	G	T	9.918e^-5	0.867	INTRON SK
3L	10487963	3L_10487963_SNP [dm3] 3L_10494863_SNP [dm6]	T	C	9.955e^-5	0.867	INTRON A2bp1
2R	11570774	2R_11570774_SNP [dm3] 2R_15683269_SNP [dm6]	G	T	9.976e^-5	0.867	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	1965995	2L_1965995_SNP [dm3] 2L_1965995_SNP [dm6]	T	G	1.005e^-4	0.867	DOWNSTREAM tRNA:CR31942 INTRON erm	TF binding site mE1_TFBS_chinmo
2R	10108387	2R_10108387_SNP [dm3] 2R_14220882_SNP [dm6]	G	C	1.005e^-4	0.867	INTRON CG8468	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	22045847	X_22045847_SNP [dm3] X_22644011_SNP [dm6]	A	T	1.008e^-4	0.867	INTERGENIC
2R	10095104	2R_10095104_SNP [dm3] 2R_14207599_SNP [dm6]	C	T	1.025e^-4	0.878	INTRON Sox15	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4003297	3L_4003297_INS [dm3] 3L_4003297_INS [dm6]	T	TAT	1.036e^-4	0.883	UPSTREAM CG14985 INTERGENIC
3L	7948811	3L_7948811_SNP [dm3] 3L_7955711_SNP [dm6]	T	C	1.050e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18986359	3R_18986359_SNP [dm3] 3R_23160637_SNP [dm6]	A	C	1.055e^-4	0.891	SYNONYMOUS_CODING CG13829	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2779837	3L_2779837_SNP [dm3] 3L_2779837_SNP [dm6]	T	C	1.060e^-4	0.891	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2139784	3L_2139784_SNP [dm3] 3L_2139784_SNP [dm6]	C	T	1.069e^-4	0.893	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10487964	3L_10487964_SNP [dm3] 3L_10494864_SNP [dm6]	T	G	1.073e^-4	0.893	INTRON A2bp1
3L	12244882	3L_12244882_SNP [dm3] 3L_12251782_SNP [dm6]	G	A	1.076e^-4	0.893	INTRON app
2R	18664076	2R_18664076_SNP [dm3] 2R_22776571_SNP [dm6]	C	A	1.096e^-4	0.894	INTRON CG42260
3L	1216294	3L_1216294_SNP [dm3] 3L_1216294_SNP [dm6]	A	T	1.097e^-4	0.894	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	7948877	3L_7948877_SNP [dm3] 3L_7955777_SNP [dm6]	A	T	1.100e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2780909	3L_2780909_SNP [dm3] 3L_2780909_SNP [dm6]	C	G	1.102e^-4	0.894	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2R	18173839	2R_18173839_SNP [dm3] 2R_22286334_SNP [dm6]	A	C	1.102e^-4	0.894	UTR_3_PRIME dve
3L	3013281	3L_3013281_SNP [dm3] 3L_3013281_SNP [dm6]	A	G	1.112e^-4	0.894	INTERGENIC
3L	462772	3L_462772_SNP [dm3] 3L_462772_SNP [dm6]	A	G	1.114e^-4	0.894	INTRON klar
3R	26125305	3R_26125305_SNP [dm3] 3R_30299583_SNP [dm6]	C	T	1.116e^-4	0.894	INTRON hdc
3L	19093394	3L_19093394_SNP [dm3] 3L_19100294_SNP [dm6]	G	A	1.124e^-4	0.895	UTR_5_PRIME Gem2 INTRON Gem2	TF binding site mE1_TFBS_cad
2L	11344267	2L_11344267_INS [dm3] 2L_11344267_INS [dm6]	A	ATGAA	1.126e^-4	0.895	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	13189687	3R_13189687_DEL [dm3] 3R_17363965_DEL [dm6]	GCCGT	G	1.144e^-4	0.903	INTRON beat-IIa
3R	10331019	3R_10331019_SNP [dm3] 3R_14505297_SNP [dm6]	A	T	1.154e^-4	0.903	INTRON CR44177	TF binding site mE1_TFBS_cad
2L	4276707	2L_4276707_SNP [dm3] 2L_4276707_SNP [dm6]	C	G	1.160e^-4	0.903	DOWNSTREAM Art2 INTERGENIC
2L	4276709	2L_4276709_SNP [dm3] 2L_4276709_SNP [dm6]	T	C	1.160e^-4	0.903	DOWNSTREAM Art2 INTERGENIC
3L	7948858	3L_7948858_SNP [dm3] 3L_7955758_SNP [dm6]	T	A	1.169e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14889722	3L_14889722_SNP [dm3] 3L_14896622_SNP [dm6]	G	A	1.172e^-4	0.903	INTERGENIC
2R	18061864	2R_18061864_SNP [dm3] 2R_22174359_SNP [dm6]	T	C	1.186e^-4	0.903	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	10665009	2R_10665009_SNP [dm3] 2R_14777504_SNP [dm6]	C	T	1.187e^-4	0.903	INTRON kn	regulatory region REDfly_CRMs
2L	7067724	2L_7067724_SNP [dm3] 2L_7067724_SNP [dm6]	G	C	1.189e^-4	0.903	UPSTREAM CG11289 INTERGENIC
X	13321099	X_13321099_SNP [dm3] X_13427066_SNP [dm6]	A	C	1.191e^-4	0.903	INTERGENIC
2L	12412978	2L_12412978_SNP [dm3] 2L_12412978_SNP [dm6]	T	A	1.199e^-4	0.903	INTRON vir-1
2L	12914375	2L_12914375_SNP [dm3] 2L_12914375_SNP [dm6]	T	C	1.203e^-4	0.903	SYNONYMOUS_CODING ACXC UTR_3_PRIME ACXC
3L	10173108	3L_10173108_SNP [dm3] 3L_10180008_SNP [dm6]	C	T	1.221e^-4	0.903	INTRON dpr10
2L	6822950	2L_6822950_SNP [dm3] 2L_6822950_SNP [dm6]	C	A	1.222e^-4	0.903	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	10156634	3R_10156634_SNP [dm3] 3R_14330912_SNP [dm6]	G	A	1.223e^-4	0.903	NON_SYNONYMOUS_CODING NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8437314	3R_8437314_SNP [dm3] 3R_12611592_SNP [dm6]	A	C	1.224e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	2794310	X_2794310_SNP [dm3] X_2900277_SNP [dm6]	C	T	1.226e^-4	0.903	INTRON kirre
X	5705233	X_5705233_SNP [dm3] X_5811200_SNP [dm6]	G	A	1.227e^-4	0.903	DOWNSTREAM CR45529 INTERGENIC
2R	19844358	2R_19844358_SNP [dm3] 2R_23956835_SNP [dm6]	T	A	1.231e^-4	0.903	SYNONYMOUS_CODING CG16787 DOWNSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9436615	2R_9436615_SNP [dm3] 2R_13549110_SNP [dm6]	A	G	1.233e^-4	0.903	SYNONYMOUS_CODING CG33156
2R	18991966	2R_18991966_SNP [dm3] 2R_23104443_SNP [dm6]	T	C	1.237e^-4	0.903	NON_SYNONYMOUS_CODING Gr59d UPSTREAM Gr59c
2R	8464869	2R_8464869_SNP [dm3] 2R_12577364_SNP [dm6]	A	G	1.243e^-4	0.904	INTRON Sin3A
3R	22100124	3R_22100124_SNP [dm3] 3R_26274402_SNP [dm6]	A	G	1.250e^-4	0.905	INTRON CG6154
X	3182902	X_3182902_SNP [dm3] X_3288869_SNP [dm6]	C	T	1.255e^-4	0.905	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2778463	3L_2778463_SNP [dm3] 3L_2778463_SNP [dm6]	G	A	1.263e^-4	0.908	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1856136	2L_1856136_SNP [dm3] 2L_1856136_SNP [dm6]	A	G	1.275e^-4	0.908	INTRON wry
2R	15552422	2R_15552422_SNP [dm3] 2R_19664917_SNP [dm6]	T	A	1.277e^-4	0.908	DOWNSTREAM hrg INTRON hrg
2R	18917359	2R_18917359_SNP [dm3] 2R_23029836_SNP [dm6]	G	C	1.279e^-4	0.908	INTRON twi & 1 other
2R	8465032	2R_8465032_SNP [dm3] 2R_12577527_SNP [dm6]	C	A	1.291e^-4	0.908	UTR_3_PRIME Sin3A DOWNSTREAM Sin3A INTRON Sin3A
2R	18991970	2R_18991970_SNP [dm3] 2R_23104447_SNP [dm6]	G	A	1.297e^-4	0.908	SYNONYMOUS_CODING Gr59d UPSTREAM Gr59c
3R	11837337	3R_11837337_SNP [dm3] 3R_16011615_SNP [dm6]	A	G	1.305e^-4	0.908	UPSTREAM GATAe INTRON GATAe	TF binding site mE1_TFBS_cad
3L	4701011	3L_4701011_SNP [dm3] 3L_4701011_SNP [dm6]	A	C	1.309e^-4	0.908	INTRON RhoGEF64C
X	6200449	X_6200449_SNP [dm3] X_6306416_SNP [dm6]	A	C	1.311e^-4	0.908	SYNONYMOUS_CODING CG3823
3R	22896261	3R_22896261_SNP [dm3] 3R_27070539_SNP [dm6]	A	G	1.315e^-4	0.908	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2596764	2R_2596764_SNP [dm3] 2R_6709259_SNP [dm6]	C	T	1.323e^-4	0.908	DOWNSTREAM CR43611 INTRON CG3409 & 1 other
2R	2596771	2R_2596771_SNP [dm3] 2R_6709266_SNP [dm6]	A	G	1.323e^-4	0.908	DOWNSTREAM CR43611 INTRON CG3409 & 1 other
3L	12134528	3L_12134528_SNP [dm3] 3L_12141428_SNP [dm6]	C	T	1.325e^-4	0.908	INTRON RhoGAP68F
3L	21997904	3L_21997904_SNP [dm3] 3L_22004804_SNP [dm6]	A	T	1.326e^-4	0.908	INTERGENIC
X	16049207	X_16049207_SNP [dm3] X_16155174_SNP [dm6]	G	T	1.339e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	12854495	X_12854495_SNP [dm3] X_12960462_SNP [dm6]	G	A	1.342e^-4	0.909	SYNONYMOUS_CODING CG32642
3R	10509631	3R_10509631_SNP [dm3] 3R_14683909_SNP [dm6]	C	T	1.343e^-4	0.909	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	8131352	3R_8131352_SNP [dm3] 3R_12305630_SNP [dm6]	A	T	1.359e^-4	0.913	INTERGENIC
2L	13355515	2L_13355515_SNP [dm3] 2L_13355515_SNP [dm6]	T	C	1.360e^-4	0.913	UPSTREAM CG9395 INTERGENIC
2L	9541623	2L_9541623_SNP [dm3] 2L_9541623_SNP [dm6]	C	G	1.363e^-4	0.913	INTRON CG17855
2L	9543391	2L_9543391_SNP [dm3] 2L_9543391_SNP [dm6]	C	T	1.372e^-4	0.916	SYNONYMOUS_CODING Cpr30B UPSTREAM CG13113 DOWNSTREAM CG17855
3L	7948844	3L_7948844_SNP [dm3] 3L_7955744_SNP [dm6]	G	C	1.382e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11180355	X_11180355_SNP [dm3] X_11286322_SNP [dm6]	G	T	1.382e^-4	0.916	INTRON CG44422
3R	19974456	3R_19974456_SNP [dm3] 3R_24148734_SNP [dm6]	C	G	1.390e^-4	0.916	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	5384339	2L_5384339_SNP [dm3] 2L_5384339_SNP [dm6]	A	G	1.392e^-4	0.916	INTERGENIC
3R	7010691	3R_7010691_SNP [dm3] 3R_11184969_SNP [dm6]	G	A	1.402e^-4	0.92	INTERGENIC
2L	1823346	2L_1823346_INS [dm3] 2L_1823346_INS [dm6]	G	GAAAG	1.417e^-4	0.924	UPSTREAM CG31933 DOWNSTREAM CG31664 INTERGENIC
3L	16267559	3L_16267559_SNP [dm3] 3L_16274459_SNP [dm6]	T	C	1.422e^-4	0.924	DOWNSTREAM CG13066 INTERGENIC
2L	2205676	2L_2205676_SNP [dm3] 2L_2205676_SNP [dm6]	T	G	1.426e^-4	0.924	DOWNSTREAM CG33124 INTRON CG31668
2R	2596836	2R_2596836_SNP [dm3] 2R_6709331_SNP [dm6]	G	C	1.428e^-4	0.924	DOWNSTREAM CR43611 INTRON CG3409 & 1 other
3R	9434071	3R_9434071_SNP [dm3] 3R_13608349_SNP [dm6]	T	A	1.439e^-4	0.925	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
2R	15552563	2R_15552563_SNP [dm3] 2R_19665058_SNP [dm6]	A	G	1.443e^-4	0.925	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	14618730	3L_14618730_SNP [dm3] 3L_14625630_SNP [dm6]	T	C	1.448e^-4	0.925	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	9543715	2L_9543715_SNP [dm3] 2L_9543715_SNP [dm6]	T	C	1.451e^-4	0.925	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3R	26151366	3R_26151366_SNP [dm3] 3R_30325644_SNP [dm6]	T	A	1.454e^-4	0.925	INTRON hdc	TF binding site mE1_TFBS_chinmo
X	13703673	X_13703673_SNP [dm3] X_13809640_SNP [dm6]	G	A	1.468e^-4	0.929	SYNONYMOUS_CODING inaE UTR_3_PRIME inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3522739	2L_3522739_SNP [dm3] 2L_3522739_SNP [dm6]	G	A	1.477e^-4	0.929	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	16414508	2L_16414508_SNP [dm3] 2L_16414508_SNP [dm6]	G	A	1.481e^-4	0.929	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
3R	13177252	3R_13177252_SNP [dm3] 3R_17351530_SNP [dm6]	A	C	1.485e^-4	0.929	INTRON beat-IIa
2L	13753184	2L_13753184_DEL [dm3] 2L_13753184_DEL [dm6]	GAGG	G	1.492e^-4	0.929	INTRON CR44846 & 1 other
2R	9430770	2R_9430770_SNP [dm3] 2R_13543265_SNP [dm6]	C	G	1.497e^-4	0.929	INTRON CG6145
3R	19833206	3R_19833206_SNP [dm3] 3R_24007484_SNP [dm6]	G	T	1.498e^-4	0.929	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22127764	3R_22127764_SNP [dm3] 3R_26302042_SNP [dm6]	A	G	1.502e^-4	0.929	INTERGENIC
2L	14346479	2L_14346479_SNP [dm3] 2L_14346479_SNP [dm6]	G	T	1.515e^-4	0.929	NON_SYNONYMOUS_CODING Send2 DOWNSTREAM CG33090 & 1 other
3L	20975664	3L_20975664_DEL [dm3] 3L_20982564_DEL [dm6]	CA	C	1.528e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19717236	X_19717236_SNP [dm3] X_19823203_SNP [dm6]	C	A	1.530e^-4	0.929	DOWNSTREAM skpE INTERGENIC
3R	19833237	3R_19833237_SNP [dm3] 3R_24007515_SNP [dm6]	C	T	1.531e^-4	0.929	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5282632	2R_5282632_SNP [dm3] 2R_9395127_SNP [dm6]	T	C	1.531e^-4	0.929	DOWNSTREAM CG8800 INTRON l_2_03659	TF binding site mE1_TFBS_cad
3L	2628044	3L_2628044_SNP [dm3] 3L_2628044_SNP [dm6]	T	G	1.534e^-4	0.929	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4172741	3L_4172741_SNP [dm3] 3L_4172741_SNP [dm6]	A	G	1.535e^-4	0.929	NON_SYNONYMOUS_CODING Ero1L
X	4044128	X_4044128_SNP [dm3] X_4150095_SNP [dm6]	T	G	1.548e^-4	0.934	INTRON Fas2
2L	8222977	2L_8222977_SNP [dm3] 2L_8222977_SNP [dm6]	A	T	1.561e^-4	0.937	SYNONYMOUS_CODING Pvr
3L	2912082	3L_2912082_SNP [dm3] 3L_2912082_SNP [dm6]	T	C	1.564e^-4	0.937	INTRON Shab
X	3182758	X_3182758_SNP [dm3] X_3288725_SNP [dm6]	T	A	1.569e^-4	0.937	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	7948843	3L_7948843_SNP [dm3] 3L_7955743_SNP [dm6]	T	A	1.576e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23199343	3L_23199343_INS [dm3] 3L_23206243_INS [dm6]	A	ATA	1.585e^-4	0.939	UPSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	18062097	2R_18062097_SNP [dm3] 2R_22174592_SNP [dm6]	G	A	1.588e^-4	0.939	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1688933	3L_1688933_SNP [dm3] 3L_1688933_SNP [dm6]	T	C	1.597e^-4	0.939	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	9429462	3R_9429462_SNP [dm3] 3R_13603740_SNP [dm6]	C	T	1.598e^-4	0.939	INTERGENIC
2R	5533346	2R_5533346_SNP [dm3] 2R_9645841_SNP [dm6]	G	C	1.605e^-4	0.939	INTRON Mmp2
3L	21761609	3L_21761609_SNP [dm3] 3L_21768509_SNP [dm6]	A	G	1.607e^-4	0.939	INTRON Syn1 & 1 other
X	3541739	X_3541739_SNP [dm3] X_3647706_SNP [dm6]	A	G	1.616e^-4	0.939	INTRON AstA-R1
X	18994749	X_18994749_SNP [dm3] X_19100716_SNP [dm6]	G	A	1.617e^-4	0.939	INTERGENIC
2R	5282798	2R_5282798_INS [dm3] 2R_9395293_INS [dm6]	T	TTTCT	1.626e^-4	0.94	DOWNSTREAM CG8800 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	5385930	2L_5385930_SNP [dm3] 2L_5385930_SNP [dm6]	C	A	1.629e^-4	0.94	INTERGENIC
3R	13699913	3R_13699913_SNP [dm3] 3R_17874191_SNP [dm6]	A	T	1.653e^-4	0.941	UTR_3_PRIME Rim DOWNSTREAM Rim
2L	4505288	2L_4505288_SNP [dm3] 2L_4505288_SNP [dm6]	T	C	1.654e^-4	0.941	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8558650	3R_8558650_DEL [dm3] 3R_12732928_DEL [dm6]	TTCTATTTATTTCTATT...	T	1.659e^-4	0.941	INTERGENIC
3L	8878537	3L_8878537_SNP [dm3] 3L_8885437_SNP [dm6]	T	C	1.664e^-4	0.941	INTRON dally
3L	10174780	3L_10174780_SNP [dm3] 3L_10181680_SNP [dm6]	A	G	1.666e^-4	0.941	INTRON dpr10
2R	15552397	2R_15552397_SNP [dm3] 2R_19664892_SNP [dm6]	G	A	1.670e^-4	0.941	DOWNSTREAM hrg INTRON hrg
3R	4984621	3R_4984621_SNP [dm3] 3R_9158899_SNP [dm6]	T	C	1.672e^-4	0.941	UPSTREAM pum INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10808649	3L_10808649_SNP [dm3] 3L_10815549_SNP [dm6]	C	G	1.692e^-4	0.941	UTR_3_PRIME CG42831
X	4559428	X_4559428_SNP [dm3] X_4665395_SNP [dm6]	A	G	1.696e^-4	0.941	INTRON CG3009
3L	3248140	3L_3248140_DEL [dm3] 3L_3248140_DEL [dm6]	GATGCG	T	1.704e^-4	0.941	UTR_5_PRIME CG43389
2R	6881891	2R_6881891_SNP [dm3] 2R_10994386_SNP [dm6]	C	G	1.713e^-4	0.941	INTRON luna	TF binding site BDTNP1_TFBS_twi
2R	593653	2R_593653_SNP [dm3] 2R_4706148_SNP [dm6]	G	T	1.714e^-4	0.941	INTRON Nipped-B
2R	7622250	2R_7622250_SNP [dm3] 2R_11734745_SNP [dm6]	A	C	1.714e^-4	0.941	INTERGENIC
2L	4022189	2L_4022189_DEL [dm3] 2L_4022189_DEL [dm6]	AA	A	1.716e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7948841	3L_7948841_SNP [dm3] 3L_7955741_SNP [dm6]	C	A	1.721e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	604337	2R_604337_SNP [dm3] 2R_4716832_SNP [dm6]	G	A	1.722e^-4	0.941	INTRON Nipped-B	transposable element FlyBase
3L	13158237	3L_13158237_DEL [dm3] 3L_13165137_DEL [dm6]	TA	T	1.734e^-4	0.941	INTERGENIC
2L	9718575	2L_9718575_SNP [dm3] 2L_9718575_SNP [dm6]	T	A	1.740e^-4	0.941	INTRON Nckx30C
2R	6269498	2R_6269498_SNP [dm3] 2R_10381993_SNP [dm6]	A	G	1.750e^-4	0.941	INTRON CG42732	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10774923	3L_10774923_SNP [dm3] 3L_10781823_SNP [dm6]	G	C	1.752e^-4	0.941	INTERGENIC
2L	9654295	2L_9654295_SNP [dm3] 2L_9654295_SNP [dm6]	C	T	1.758e^-4	0.941	SYNONYMOUS_CODING Apoltp
X	22035204	X_22035204_SNP [dm3] X_22633368_SNP [dm6]	T	C	1.758e^-4	0.941	UPSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_z transposable element FlyBase
3R	10879190	3R_10879190_SNP [dm3] 3R_15053468_SNP [dm6]	A	G	1.760e^-4	0.941	INTERGENIC
3L	3039691	3L_3039691_SNP [dm3] 3L_3039691_SNP [dm6]	C	G	1.768e^-4	0.941	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	2628685	2R_2628685_SNP [dm3] 2R_6741180_SNP [dm6]	T	C	1.772e^-4	0.941	UPSTREAM l_2_01289 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	2205529	2L_2205529_SNP [dm3] 2L_2205529_SNP [dm6]	A	G	1.774e^-4	0.941	SYNONYMOUS_CODING CG31668 DOWNSTREAM CG33124
3L	9774982	3L_9774982_SNP [dm3] 3L_9781882_SNP [dm6]	C	T	1.779e^-4	0.941	SYNONYMOUS_CODING CG8177 DOWNSTREAM CG8177 INTRON CG8177
X	12805280	X_12805280_SNP [dm3] X_12911247_SNP [dm6]	C	T	1.781e^-4	0.941	INTRON CG4645
3R	16355001	3R_16355001_SNP [dm3] 3R_20529279_SNP [dm6]	C	A	1.784e^-4	0.941	INTERGENIC
3L	6137436	3L_6137436_SNP [dm3] 3L_6144336_SNP [dm6]	G	A	1.793e^-4	0.941	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
2R	575416	2R_575416_SNP [dm3] 2R_4687911_SNP [dm6]	C	A	1.796e^-4	0.941	INTERGENIC
2R	577832	2R_577832_SNP [dm3] 2R_4690327_SNP [dm6]	C	A	1.796e^-4	0.941	INTERGENIC	transposable element FlyBase
2R	593026	2R_593026_SNP [dm3] 2R_4705521_SNP [dm6]	G	A	1.796e^-4	0.941	INTRON Nipped-B	transposable element FlyBase
3R	21855623	3R_21855623_SNP [dm3] 3R_26029901_SNP [dm6]	T	A	1.805e^-4	0.941	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	762822	2R_762822_SNP [dm3] 2R_4875317_SNP [dm6]	G	A	1.807e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	3711370	2L_3711370_SNP [dm3] 2L_3711370_SNP [dm6]	C	T	1.822e^-4	0.944	SYNONYMOUS_CODING cutlet DOWNSTREAM CG31955	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	5481998	3L_5481998_DEL [dm3] 3L_5488898_DEL [dm6]	CC	C	1.822e^-4	0.944	INTERGENIC
3L	3009114	3L_3009114_SNP [dm3] 3L_3009114_SNP [dm6]	T	C	1.826e^-4	0.944	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
2R	576029	2R_576029_SNP [dm3] 2R_4688524_SNP [dm6]	A	G	1.843e^-4	0.946	INTERGENIC	transposable element FlyBase
3R	9880402	3R_9880402_SNP [dm3] 3R_14054680_SNP [dm6]	A	T	1.851e^-4	0.946	INTERGENIC
2R	17444084	2R_17444084_SNP [dm3] 2R_21556579_SNP [dm6]	A	C	1.866e^-4	0.946	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24896291	3R_24896291_SNP [dm3] 3R_29070569_SNP [dm6]	T	C	1.867e^-4	0.946	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11581289	2R_11581289_SNP [dm3] 2R_15693784_SNP [dm6]	A	C	1.873e^-4	0.946	UPSTREAM CG33460 DOWNSTREAM CG30087 EXON CR44372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9593493	2R_9593493_SNP [dm3] 2R_13705988_SNP [dm6]	C	G	1.877e^-4	0.946	INTRON fas
2L	7625005	2L_7625005_SNP [dm3] 2L_7625005_SNP [dm6]	C	T	1.878e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	2851759	2L_2851759_SNP [dm3] 2L_2851759_SNP [dm6]	C	T	1.885e^-4	0.946	INTRON CG3104
2R	592324	2R_592324_SNP [dm3] 2R_4704819_SNP [dm6]	G	T	1.906e^-4	0.946	INTRON Nipped-B
2L	16414318	2L_16414318_SNP [dm3] 2L_16414318_SNP [dm6]	A	T	1.907e^-4	0.946	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2R	14397067	2R_14397067_SNP [dm3] 2R_18509562_SNP [dm6]	C	T	1.913e^-4	0.946	INTERGENIC
3L	8628705	3L_8628705_SNP [dm3] 3L_8635605_SNP [dm6]	G	A	1.917e^-4	0.946	INTRON Zasp66
3L	6137429	3L_6137429_SNP [dm3] 3L_6144329_SNP [dm6]	G	A	1.918e^-4	0.946	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
2L	8195614	2L_8195614_INS [dm3] 2L_8195614_INS [dm6]	A	AA	1.918e^-4	0.946	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16410656	3R_16410656_SNP [dm3] 3R_20584934_SNP [dm6]	G	T	1.923e^-4	0.946	INTRON CG16953
2R	8464342	2R_8464342_SNP [dm3] 2R_12576837_SNP [dm6]	G	A	1.930e^-4	0.946	NON_SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A
3R	26369271	3R_26369271_SNP [dm3] 3R_30543549_SNP [dm6]	A	G	1.933e^-4	0.946	INTRON tmod	TF binding site BDTNP1_TFBS_twi
2L	4276727	2L_4276727_SNP [dm3] 2L_4276727_SNP [dm6]	T	C	1.957e^-4	0.946	DOWNSTREAM Art2 INTERGENIC
3R	7010699	3R_7010699_SNP [dm3] 3R_11184977_SNP [dm6]	A	G	1.974e^-4	0.946	INTERGENIC
3R	24896639	3R_24896639_SNP [dm3] 3R_29070917_SNP [dm6]	C	G	1.976e^-4	0.946	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19454829	2R_19454829_SNP [dm3] 2R_23567306_SNP [dm6]	C	T	1.980e^-4	0.946	UPSTREAM apt INTRON apt	TF binding site mE1_TFBS_chinmo
2R	8961691	2R_8961691_SNP [dm3] 2R_13074186_SNP [dm6]	C	A	1.981e^-4	0.946	INTRON Drl-2
3L	867329	3L_867329_SNP [dm3] 3L_867329_SNP [dm6]	T	C	1.983e^-4	0.946	INTRON CG12502
3L	11062131	3L_11062131_SNP [dm3] 3L_11069031_SNP [dm6]	A	G	1.998e^-4	0.946	DOWNSTREAM CG6310 & 2 others INTERGENIC
3R	10879168	3R_10879168_SNP [dm3] 3R_15053446_SNP [dm6]	A	C	2.000e^-4	0.946	INTERGENIC
2L	5384452	2L_5384452_SNP [dm3] 2L_5384452_SNP [dm6]	T	C	2.000e^-4	0.946	INTERGENIC
3L	12534828	3L_12534828_SNP [dm3] 3L_12541728_SNP [dm6]	C	T	2.002e^-4	0.946	UPSTREAM CR43612 INTRON sowah EXON CR43612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4948626	3R_4948626_SNP [dm3] 3R_9122904_SNP [dm6]	C	T	2.003e^-4	0.946	INTRON pum
3L	2217096	3L_2217096_SNP [dm3] 3L_2217096_SNP [dm6]	G	A	2.007e^-4	0.946	INTERGENIC
2L	11404763	2L_11404763_SNP [dm3] 2L_11404763_SNP [dm6]	C	A	2.008e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
3R	26151664	3R_26151664_SNP [dm3] 3R_30325942_SNP [dm6]	A	C	2.009e^-4	0.946	INTRON hdc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19597685	X_19597685_SNP [dm3] X_19703652_SNP [dm6]	C	T	2.010e^-4	0.946	SYNONYMOUS_CODING CG14232 UPSTREAM CG14230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12675960	X_12675960_SNP [dm3] X_12781927_SNP [dm6]	A	T	2.013e^-4	0.946	INTRON CG32647
3L	20975667	3L_20975667_DEL [dm3] 3L_20982567_DEL [dm6]	GCC	G	2.015e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6151807	3L_6151807_SNP [dm3] 3L_6158707_SNP [dm6]	G	A	2.015e^-4	0.946	UPSTREAM Cpr65Ay INTERGENIC
2L	15602566	2L_15602566_SNP [dm3] 2L_15602566_SNP [dm6]	A	C	2.018e^-4	0.946	INTERGENIC
3L	16270239	3L_16270239_SNP [dm3] 3L_16277139_SNP [dm6]	C	A	2.026e^-4	0.946	UPSTREAM CG13065 INTERGENIC	TF binding site mE1_TFBS_cad
X	13446729	X_13446729_SNP [dm3] X_13552696_SNP [dm6]	G	A	2.027e^-4	0.946	UTR_3_PRIME CG11816 DOWNSTREAM CG11816
X	7206441	X_7206441_SNP [dm3] X_7312408_SNP [dm6]	T	C	2.031e^-4	0.946	INTRON CR44357 & 1 other
2L	10869751	2L_10869751_SNP [dm3] 2L_10869751_SNP [dm6]	T	C	2.033e^-4	0.946	UPSTREAM CG12517 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9542441	2L_9542441_SNP [dm3] 2L_9542441_SNP [dm6]	C	A	2.049e^-4	0.951	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
2L	9541690	2L_9541690_SNP [dm3] 2L_9541690_SNP [dm6]	C	T	2.054e^-4	0.951	SYNONYMOUS_CODING CG17855
3R	5163548	3R_5163548_SNP [dm3] 3R_9337826_SNP [dm6]	G	A	2.059e^-4	0.951	DOWNSTREAM CR43301 & 1 other INTERGENIC
2L	13813762	2L_13813762_SNP [dm3] 2L_13813762_SNP [dm6]	A	T	2.069e^-4	0.952	UPSTREAM Sos & 1 other DOWNSTREAM CG16865 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	761609	2R_761609_SNP [dm3] 2R_4874104_SNP [dm6]	C	T	2.075e^-4	0.952	INTERGENIC	transposable element FlyBase
3L	14081640	3L_14081640_SNP [dm3] 3L_14088540_SNP [dm6]	A	G	2.089e^-4	0.952	INTERGENIC
2L	16581211	2L_16581211_SNP [dm3] 2L_16581211_SNP [dm6]	G	A	2.095e^-4	0.952	INTRON CG42389
3L	10064524	3L_10064524_SNP [dm3] 3L_10071424_SNP [dm6]	A	G	2.107e^-4	0.952	INTRON dpr6
X	16017363	X_16017363_SNP [dm3] X_16123330_SNP [dm6]	A	C	2.111e^-4	0.952	INTRON disco-r
2L	2895969	2L_2895969_SNP [dm3] 2L_2895969_SNP [dm6]	G	A	2.120e^-4	0.952	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	23520342	3R_23520342_DEL [dm3] 3R_27694620_DEL [dm6]	AAGAAA	A	2.128e^-4	0.952	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
3R	9413046	3R_9413046_SNP [dm3] 3R_13587324_SNP [dm6]	G	A	2.132e^-4	0.952	UPSTREAM CG14370 INTERGENIC
2L	9541934	2L_9541934_SNP [dm3] 2L_9541934_SNP [dm6]	C	A	2.143e^-4	0.952	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
2L	1511779	2L_1511779_SNP [dm3] 2L_1511779_SNP [dm6]	C	T	2.146e^-4	0.952	INTERGENIC
2R	11065795	2R_11065795_SNP [dm3] 2R_15178290_SNP [dm6]	A	C	2.178e^-4	0.952	INTRON igl
3R	7998697	3R_7998697_SNP [dm3] 3R_12172975_SNP [dm6]	T	G	2.179e^-4	0.952	INTERGENIC
3L	4412784	3L_4412784_SNP [dm3] 3L_4412784_SNP [dm6]	C	G	2.189e^-4	0.952	INTRON DOR
3L	13310238	3L_13310238_SNP [dm3] 3L_13317138_SNP [dm6]	T	G	2.191e^-4	0.952	INTERGENIC
X	8131898	X_8131898_SNP [dm3] X_8237865_SNP [dm6]	C	T	2.192e^-4	0.952	SYNONYMOUS_CODING sdt
3L	21654141	3L_21654141_DEL [dm3] 3L_21661041_DEL [dm6]	AA	A	2.194e^-4	0.952	INTRON CG43980
3R	13031001	3R_13031001_SNP [dm3] 3R_17205279_SNP [dm6]	G	T	2.197e^-4	0.952	INTERGENIC
3L	2796777	3L_2796777_SNP [dm3] 3L_2796777_SNP [dm6]	A	C	2.197e^-4	0.952	INTRON CG43444	TF binding site mE1_TFBS_inv
X	5263427	X_5263427_SNP [dm3] X_5369394_SNP [dm6]	T	C	2.198e^-4	0.952	INTRON SK
2L	7897422	2L_7897422_INS [dm3] 2L_7897422_INS [dm6]	A	AGTCTA	2.210e^-4	0.952	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17587016	X_17587016_SNP [dm3] X_17692983_SNP [dm6]	T	A	2.213e^-4	0.952	INTRON chas
3L	2796737	3L_2796737_SNP [dm3] 3L_2796737_SNP [dm6]	A	T	2.216e^-4	0.952	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	2358537	3L_2358537_SNP [dm3] 3L_2358537_SNP [dm6]	A	G	2.217e^-4	0.952	INTERGENIC
X	6200451	X_6200451_SNP [dm3] X_6306418_SNP [dm6]	A	G	2.221e^-4	0.952	NON_SYNONYMOUS_CODING CG3823
2R	766496	2R_766496_SNP [dm3] 2R_4878991_SNP [dm6]	G	C	2.232e^-4	0.952	INTERGENIC
X	2794198	X_2794198_SNP [dm3] X_2900165_SNP [dm6]	G	T	2.232e^-4	0.952	INTRON kirre
2L	20707703	2L_20707703_SNP [dm3] 2L_20707703_SNP [dm6]	T	C	2.232e^-4	0.952	INTRON Hr38
2R	601930	2R_601930_DEL [dm3] 2R_4714425_DEL [dm6]	CATAC	C	2.234e^-4	0.952	INTRON Nipped-B	transposable element FlyBase
2L	12638391	2L_12638391_SNP [dm3] 2L_12638391_SNP [dm6]	T	C	2.236e^-4	0.952	INTRON Ref2	TF binding site BDTNP1_TFBS_twi
3R	8032876	3R_8032876_SNP [dm3] 3R_12207154_SNP [dm6]	C	G	2.236e^-4	0.952	DOWNSTREAM tRNA:CR31356 INTERGENIC
3R	11322341	3R_11322341_SNP [dm3] 3R_15496619_SNP [dm6]	C	G	2.238e^-4	0.952	DOWNSTREAM CG5213 INTERGENIC
3L	19093873	3L_19093873_SNP [dm3] 3L_19100773_SNP [dm6]	A	T	2.239e^-4	0.952	UPSTREAM Gem2 INTERGENIC
3R	8035251	3R_8035251_SNP [dm3] 3R_12209529_SNP [dm6]	G	A	2.244e^-4	0.952	INTRON CG4830
2R	16373791	2R_16373791_SNP [dm3] 2R_20486286_SNP [dm6]	G	T	2.251e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2205620	2L_2205620_SNP [dm3] 2L_2205620_SNP [dm6]	C	T	2.261e^-4	0.952	NON_SYNONYMOUS_CODING CG31668 DOWNSTREAM CG33124
3R	17704840	3R_17704840_SNP [dm3] 3R_21879118_SNP [dm6]	C	A	2.264e^-4	0.952	NON_SYNONYMOUS_CODING P5CDh2 UPSTREAM CG34148 EXON CR45046	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	10514625	X_10514625_SNP [dm3] X_10620592_SNP [dm6]	A	T	2.270e^-4	0.952	UPSTREAM CG43347 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11346915	2L_11346915_SNP [dm3] 2L_11346915_SNP [dm6]	T	C	2.270e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9755355	2R_9755355_SNP [dm3] 2R_13867850_SNP [dm6]	T	C	2.272e^-4	0.952	INTRON shot
3L	523976	3L_523976_SNP [dm3] 3L_523976_SNP [dm6]	G	C	2.274e^-4	0.952	INTRON klar	regulatory region REDfly_CRMs
2L	3914410	2L_3914410_SNP [dm3] 2L_3914410_SNP [dm6]	A	T	2.274e^-4	0.952	UPSTREAM CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7183802	3L_7183802_SNP [dm3] 3L_7190702_SNP [dm6]	A	G	2.282e^-4	0.953	UPSTREAM Dscam2 INTERGENIC
3L	14898724	3L_14898724_SNP [dm3] 3L_14905624_SNP [dm6]	T	C	2.300e^-4	0.953	INTRON DCX-EMAP
2R	15552520	2R_15552520_INS [dm3] 2R_19665015_INS [dm6]	T	TT	2.305e^-4	0.953	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	15719362	3L_15719362_SNP [dm3] 3L_15726262_SNP [dm6]	A	G	2.306e^-4	0.953	INTRON comm
2R	9790589	2R_9790589_SNP [dm3] 2R_13903084_SNP [dm6]	C	T	2.310e^-4	0.953	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	14834047	3R_14834047_SNP [dm3] 3R_19008325_SNP [dm6]	A	G	2.314e^-4	0.953	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18748927	2R_18748927_SNP [dm3] 2R_22861404_SNP [dm6]	T	A	2.320e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13452141	X_13452141_SNP [dm3] X_13558108_SNP [dm6]	A	C	2.338e^-4	0.953	DOWNSTREAM CG32631 INTERGENIC
2R	15552380	2R_15552380_SNP [dm3] 2R_19664875_SNP [dm6]	C	T	2.339e^-4	0.953	DOWNSTREAM hrg INTRON hrg
2L	3969770	2L_3969770_SNP [dm3] 2L_3969770_SNP [dm6]	T	A	2.348e^-4	0.953	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8915783	3R_8915783_SNP [dm3] 3R_13090061_SNP [dm6]	A	T	2.350e^-4	0.953	UTR_3_PRIME CG34308 INTRON timeout
2R	19297612	2R_19297612_SNP [dm3] 2R_23410089_SNP [dm6]	C	G	2.352e^-4	0.953	INTERGENIC
3R	26151474	3R_26151474_SNP [dm3] 3R_30325752_SNP [dm6]	G	A	2.355e^-4	0.953	INTRON hdc	TF binding site mE1_TFBS_chinmo
2L	12897005	2L_12897005_INS [dm3] 2L_12897005_INS [dm6]	C	CTTTCACAC	2.361e^-4	0.953	INTERGENIC
X	6316418	X_6316418_SNP [dm3] X_6422385_SNP [dm6]	G	A	2.373e^-4	0.953	DOWNSTREAM CG42340 INTERGENIC
3L	13310121	3L_13310121_SNP [dm3] 3L_13317021_SNP [dm6]	A	C	2.373e^-4	0.953	INTERGENIC
3L	10064544	3L_10064544_SNP [dm3] 3L_10071444_SNP [dm6]	G	A	2.382e^-4	0.953	INTRON dpr6
3L	2140066	3L_2140066_SNP [dm3] 3L_2140066_SNP [dm6]	C	T	2.383e^-4	0.953	NON_SYNONYMOUS_CODING zormin INTRON zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10174156	3L_10174156_SNP [dm3] 3L_10181056_SNP [dm6]	C	G	2.384e^-4	0.953	INTRON dpr10
3R	5256026	3R_5256026_SNP [dm3] 3R_9430304_SNP [dm6]	C	T	2.384e^-4	0.953	INTRON ps	TF binding site mE1_TFBS_Trl
X	8407270	X_8407270_SNP [dm3] X_8513237_SNP [dm6]	G	C	2.386e^-4	0.953	INTRON CG33181
2R	15096407	2R_15096407_SNP [dm3] 2R_19208902_SNP [dm6]	T	G	2.396e^-4	0.953	INTRON hppy
3L	13859693	3L_13859693_SNP [dm3] 3L_13866593_SNP [dm6]	A	T	2.398e^-4	0.953	DOWNSTREAM dysc INTRON CG8745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	741411	2R_741411_SNP [dm3] 2R_4853906_SNP [dm6]	G	A	2.401e^-4	0.953	INTERGENIC
2R	18005902	2R_18005902_SNP [dm3] 2R_22118397_SNP [dm6]	A	T	2.413e^-4	0.953	INTRON Vrp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8818995	2L_8818995_SNP [dm3] 2L_8818995_SNP [dm6]	A	G	2.418e^-4	0.953	INTERGENIC
2R	6699367	2R_6699367_SNP [dm3] 2R_10811862_SNP [dm6]	G	A	2.430e^-4	0.953	SYNONYMOUS_CODING mms4 UPSTREAM CG7637 DOWNSTREAM CG12341	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22035497	X_22035497_SNP [dm3] X_22633661_SNP [dm6]	T	G	2.431e^-4	0.953	UPSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA transposable element FlyBase
2R	7622459	2R_7622459_SNP [dm3] 2R_11734954_SNP [dm6]	T	A	2.431e^-4	0.953	INTERGENIC
X	6200458	X_6200458_SNP [dm3] X_6306425_SNP [dm6]	C	T	2.433e^-4	0.953	SYNONYMOUS_CODING CG3823
3R	5255866	3R_5255866_SNP [dm3] 3R_9430144_SNP [dm6]	G	A	2.434e^-4	0.953	INTRON ps	TF binding site mE1_TFBS_Trl
2L	3348314	2L_3348314_SNP [dm3] 2L_3348314_SNP [dm6]	A	T	2.441e^-4	0.954	INTRON E23
2L	1856096	2L_1856096_SNP [dm3] 2L_1856096_SNP [dm6]	G	A	2.476e^-4	0.956	INTRON wry
2R	17749669	2R_17749669_SNP [dm3] 2R_21862164_SNP [dm6]	G	C	2.480e^-4	0.956	DOWNSTREAM CG9294 INTERGENIC
2R	15552381	2R_15552381_SNP [dm3] 2R_19664876_SNP [dm6]	T	A	2.487e^-4	0.956	DOWNSTREAM hrg INTRON hrg
3L	9321913	3L_9321913_SNP [dm3] 3L_9328813_SNP [dm6]	G	A	2.490e^-4	0.956	INTERGENIC
3R	16498134	3R_16498134_SNP [dm3] 3R_20672412_SNP [dm6]	A	G	2.493e^-4	0.956	UTR_3_PRIME Cpr92F
X	3334314	X_3334314_SNP [dm3] X_3440281_SNP [dm6]	G	T	2.496e^-4	0.956	UPSTREAM CG12535 INTRON CR44999 & 1 other
2L	17156563	2L_17156563_SNP [dm3] 2L_17156563_SNP [dm6]	A	G	2.497e^-4	0.956	INTRON beat-IIIa & 1 other
2R	11735758	2R_11735758_SNP [dm3] 2R_15848253_SNP [dm6]	A	T	2.508e^-4	0.956	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
X	10511204	X_10511204_SNP [dm3] X_10617171_SNP [dm6]	A	G	2.520e^-4	0.956	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	13030634	3R_13030634_SNP [dm3] 3R_17204912_SNP [dm6]	T	C	2.521e^-4	0.956	INTERGENIC
3R	8050942	3R_8050942_SNP [dm3] 3R_12225220_SNP [dm6]	A	G	2.526e^-4	0.956	UPSTREAM CR43477 & 1 other DOWNSTREAM CG12256 INTERGENIC
2L	14996561	2L_14996561_SNP [dm3] 2L_14996561_SNP [dm6]	C	T	2.547e^-4	0.956	INTRON mol	TF binding site BDTNP1_TFBS_dl
3R	14717220	3R_14717220_SNP [dm3] 3R_18891498_SNP [dm6]	G	T	2.549e^-4	0.956	INTERGENIC
X	3463043	X_3463043_DEL [dm3] X_3569010_DEL [dm6]	GCCGAACAGCTACCA...	T	2.550e^-4	0.956	UTR_5_PRIME CG32791 UPSTREAM ppk8 INTRON ppk8
3L	2279824	3L_2279824_SNP [dm3] 3L_2279824_SNP [dm6]	G	A	2.560e^-4	0.956	INTERGENIC
3R	5782972	3R_5782972_SNP [dm3] 3R_9957250_SNP [dm6]	C	G	2.568e^-4	0.956	DOWNSTREAM Glut4EF INTRON Glut4EF	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	2642266	2R_2642266_SNP [dm3] 2R_6754761_SNP [dm6]	T	G	2.575e^-4	0.956	NON_SYNONYMOUS_CODING Eb1
2L	11065136	2L_11065136_SNP [dm3] 2L_11065136_SNP [dm6]	A	T	2.578e^-4	0.956	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11735777	2R_11735777_SNP [dm3] 2R_15848272_SNP [dm6]	G	C	2.579e^-4	0.956	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	10174998	3L_10174998_SNP [dm3] 3L_10181898_SNP [dm6]	C	A	2.587e^-4	0.956	INTRON dpr10
2R	4122223	2R_4122223_SNP [dm3] 2R_8234718_SNP [dm6]	T	G	2.589e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10636247	3R_10636247_SNP [dm3] 3R_14810525_SNP [dm6]	G	A	2.592e^-4	0.956	INTRON btsz
2L	9621896	2L_9621896_INS [dm3] 2L_9621896_INS [dm6]	T	TT	2.598e^-4	0.956	INTRON GlcAT-S
X	8113791	X_8113791_SNP [dm3] X_8219758_SNP [dm6]	T	G	2.601e^-4	0.956	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2836822	2L_2836822_SNP [dm3] 2L_2836822_SNP [dm6]	G	T	2.606e^-4	0.956	INTRON CG3119
2L	19674980	2L_19674980_SNP [dm3] 2L_19674980_SNP [dm6]	A	T	2.607e^-4	0.956	INTRON Lar
3R	3171928	3R_3171928_SNP [dm3] 3R_7346206_SNP [dm6]	C	T	2.615e^-4	0.956	SYNONYMOUS_CODING CG31496 UPSTREAM nxf4	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3039661	3L_3039661_SNP [dm3] 3L_3039661_SNP [dm6]	A	G	2.617e^-4	0.956	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2224594	2L_2224594_SNP [dm3] 2L_2224594_SNP [dm6]	A	G	2.627e^-4	0.956	SYNONYMOUS_CODING papi DOWNSTREAM CG15387	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2278823	3L_2278823_SNP [dm3] 3L_2278823_SNP [dm6]	G	T	2.629e^-4	0.956	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2753652	X_2753652_SNP [dm3] X_2859619_SNP [dm6]	G	A	2.637e^-4	0.956	INTRON kirre
3R	22747033	3R_22747033_SNP [dm3] 3R_26921311_SNP [dm6]	C	A	2.640e^-4	0.956	INTRON sda
2L	15999380	2L_15999380_SNP [dm3] 2L_15999380_SNP [dm6]	A	T	2.648e^-4	0.956	UPSTREAM beat-Ic INTERGENIC
2R	7129938	2R_7129938_SNP [dm3] 2R_11242433_SNP [dm6]	T	G	2.649e^-4	0.956	UPSTREAM Listericin INTERGENIC
3L	9322340	3L_9322340_SNP [dm3] 3L_9329240_SNP [dm6]	G	T	2.650e^-4	0.956	INTERGENIC
3L	3249015	3L_3249015_DEL [dm3] 3L_3249015_DEL [dm6]	AAATAAGCAA	A	2.656e^-4	0.956	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2633726	2R_2633726_SNP [dm3] 2R_6746221_SNP [dm6]	A	T	2.657e^-4	0.956	UPSTREAM CG3267 DOWNSTREAM phtf INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	2595941	2R_2595941_SNP [dm3] 2R_6708436_SNP [dm6]	T	C	2.657e^-4	0.956	UPSTREAM CR43611 & 2 others INTRON CG3409 & 2 others
2L	13355495	2L_13355495_SNP [dm3] 2L_13355495_SNP [dm6]	C	T	2.659e^-4	0.956	UPSTREAM CG9395 INTERGENIC
3L	4172356	3L_4172356_SNP [dm3] 3L_4172356_SNP [dm6]	T	C	2.662e^-4	0.956	SYNONYMOUS_CODING Ero1L
3R	20720584	3R_20720584_SNP [dm3] 3R_24894862_SNP [dm6]	A	C	2.666e^-4	0.956	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3383635	3R_3383635_DEL [dm3] 3R_7557913_DEL [dm6]	GG	G	2.675e^-4	0.956	INTERGENIC
3R	21976122	3R_21976122_SNP [dm3] 3R_26150400_SNP [dm6]	G	T	2.675e^-4	0.956	INTERGENIC
2R	12837084	2R_12837084_SNP [dm3] 2R_16949579_SNP [dm6]	G	C	2.679e^-4	0.956	NON_SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4507891	2L_4507891_SNP [dm3] 2L_4507891_SNP [dm6]	T	C	2.682e^-4	0.956	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3101892	X_3101892_SNP [dm3] X_3207859_SNP [dm6]	G	A	2.691e^-4	0.956	INTRON dnc
2L	16414265	2L_16414265_SNP [dm3] 2L_16414265_SNP [dm6]	G	A	2.709e^-4	0.956	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
3L	4172974	3L_4172974_SNP [dm3] 3L_4172974_SNP [dm6]	T	C	2.716e^-4	0.956	SYNONYMOUS_CODING Ero1L UPSTREAM CG18675
X	19597343	X_19597343_SNP [dm3] X_19703310_SNP [dm6]	G	A	2.721e^-4	0.956	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13189686	3R_13189686_SNP [dm3] 3R_17363964_SNP [dm6]	A	T	2.728e^-4	0.956	INTRON beat-IIa
3L	10226846	3L_10226846_SNP [dm3] 3L_10233746_SNP [dm6]	G	T	2.729e^-4	0.956	INTERGENIC
X	8247322	X_8247322_SNP [dm3] X_8353289_SNP [dm6]	T	C	2.730e^-4	0.956	INTRON nAChRalpha3
3R	4934396	3R_4934396_SNP [dm3] 3R_9108674_SNP [dm6]	A	G	2.733e^-4	0.956	INTRON pum
X	15578013	X_15578013_SNP [dm3] X_15683980_SNP [dm6]	C	T	2.733e^-4	0.956	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	726763	2L_726763_SNP [dm3] 2L_726763_SNP [dm6]	A	G	2.742e^-4	0.956	INTERGENIC
2L	3894022	2L_3894022_SNP [dm3] 2L_3894022_SNP [dm6]	G	A	2.743e^-4	0.956	INTRON capu
X	8391214	X_8391214_SNP [dm3] X_8497181_SNP [dm6]	A	T	2.744e^-4	0.956	INTRON CG33181
X	5458315	X_5458315_SNP [dm3] X_5564282_SNP [dm6]	G	A	2.744e^-4	0.956	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	2140951	X_2140951_SNP [dm3] X_2246918_SNP [dm6]	T	C	2.747e^-4	0.956	NON_SYNONYMOUS_CODING Or2a DOWNSTREAM fs_1_K10 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5353615	3R_5353615_SNP [dm3] 3R_9527893_SNP [dm6]	A	T	2.752e^-4	0.956	DOWNSTREAM CG8176 & 1 other INTERGENIC
2L	6249182	2L_6249182_SNP [dm3] 2L_6249182_SNP [dm6]	G	A	2.758e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	7674219	2L_7674219_SNP [dm3] 2L_7674219_SNP [dm6]	G	A	2.781e^-4	0.957	INTRON Slob & 1 other
3L	2783296	3L_2783296_SNP [dm3] 3L_2783296_SNP [dm6]	T	A	2.784e^-4	0.957	SYNONYMOUS_CODING pgant6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26118636	3R_26118636_SNP [dm3] 3R_30292914_SNP [dm6]	G	T	2.786e^-4	0.957	INTRON hdc
3R	9725435	3R_9725435_SNP [dm3] 3R_13899713_SNP [dm6]	C	A	2.791e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	2838344	2R_2838344_SNP [dm3] 2R_6950839_SNP [dm6]	C	T	2.795e^-4	0.957	SYNONYMOUS_CODING ppk25 DOWNSTREAM CheB42a INTRON mim & 1 other
2R	4275225	2R_4275225_SNP [dm3] 2R_8387720_SNP [dm6]	T	C	2.800e^-4	0.957	INTRON pdm3
3L	4174740	3L_4174740_SNP [dm3] 3L_4174740_SNP [dm6]	A	G	2.805e^-4	0.957	SYNONYMOUS_CODING CG18675 DOWNSTREAM Ero1L & 1 other
X	10617339	X_10617339_SNP [dm3] X_10723306_SNP [dm6]	A	C	2.808e^-4	0.957	INTRON CG32676
2R	18366427	2R_18366427_DEL [dm3] 2R_22478922_DEL [dm6]	ATCTACA	C	2.809e^-4	0.957	SPLICE_SITE_REGION CG4752 INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5364393	X_5364393_SNP [dm3] X_5470360_SNP [dm6]	T	C	2.811e^-4	0.957	INTRON SPR
2L	9868092	2L_9868092_SNP [dm3] 2L_9868092_SNP [dm6]	C	T	2.819e^-4	0.958	INTRON nAChRalpha6
3R	10342100	3R_10342100_SNP [dm3] 3R_14516378_SNP [dm6]	A	G	2.835e^-4	0.958	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
3L	21736714	3L_21736714_SNP [dm3] 3L_21743614_SNP [dm6]	C	T	2.836e^-4	0.958	SYNONYMOUS_CODING CG14565	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11735735	2R_11735735_SNP [dm3] 2R_15848230_SNP [dm6]	G	A	2.845e^-4	0.958	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2L	13821812	2L_13821812_SNP [dm3] 2L_13821812_SNP [dm6]	G	C	2.846e^-4	0.958	NON_SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4122230	2R_4122230_SNP [dm3] 2R_8234725_SNP [dm6]	T	C	2.848e^-4	0.958	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10879179	3R_10879179_SNP [dm3] 3R_15053457_SNP [dm6]	G	A	2.850e^-4	0.958	INTERGENIC
X	2333466	X_2333466_SNP [dm3] X_2439433_SNP [dm6]	C	G	2.860e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10666580	2R_10666580_SNP [dm3] 2R_14779075_SNP [dm6]	A	G	2.873e^-4	0.961	INTRON kn
3L	4173375	3L_4173375_SNP [dm3] 3L_4173375_SNP [dm6]	T	C	2.875e^-4	0.961	NON_SYNONYMOUS_CODING Ero1L UPSTREAM CG18675
2L	2014846	2L_2014846_SNP [dm3] 2L_2014846_SNP [dm6]	A	G	2.881e^-4	0.962	INTRON CG4238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5010788	2R_5010788_SNP [dm3] 2R_9123283_SNP [dm6]	A	G	2.902e^-4	0.962	UTR_3_PRIME GstE13 DOWNSTREAM CG18659
2L	19212019	2L_19212019_SNP [dm3] 2L_19212019_SNP [dm6]	C	T	2.903e^-4	0.962	INTERGENIC
2L	6941723	2L_6941723_DEL [dm3] 2L_6941723_DEL [dm6]	ACTTCAGTCA	A	2.918e^-4	0.962	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	2360632	3R_2360632_SNP [dm3] 3R_6534910_SNP [dm6]	C	T	2.922e^-4	0.962	INTRON dpr11
2R	12131936	2R_12131936_SNP [dm3] 2R_16244431_SNP [dm6]	T	C	2.932e^-4	0.962	INTRON CngA	TF binding site mE1_TFBS_inv
2R	12131943	2R_12131943_SNP [dm3] 2R_16244438_SNP [dm6]	T	C	2.932e^-4	0.962	INTRON CngA	TF binding site mE1_TFBS_inv
3R	18516169	3R_18516169_SNP [dm3] 3R_22690447_SNP [dm6]	T	A	2.942e^-4	0.962	UPSTREAM Nup133 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9244238	2R_9244238_SNP [dm3] 2R_13356733_SNP [dm6]	T	C	2.950e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14340897	2R_14340897_SNP [dm3] 2R_18453392_SNP [dm6]	A	G	2.952e^-4	0.962	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
2L	9532108	2L_9532108_SNP [dm3] 2L_9532108_SNP [dm6]	C	T	2.956e^-4	0.962	INTRON Oatp30B
3R	18919856	3R_18919856_SNP [dm3] 3R_23094134_SNP [dm6]	C	A	2.978e^-4	0.962	SYNONYMOUS_CODING CG17110 UTR_3_PRIME CG6726 DOWNSTREAM CG6726 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13096570	3L_13096570_SNP [dm3] 3L_13103470_SNP [dm6]	C	A	2.980e^-4	0.962	INTERGENIC
X	16317041	X_16317041_INS [dm3] X_16423008_INS [dm6]	G	GAGG	2.981e^-4	0.962	UTR_5_PRIME hang UPSTREAM AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19559300	3R_19559300_SNP [dm3] 3R_23733578_SNP [dm6]	T	A	2.989e^-4	0.962	UTR_5_PRIME Hmgcr UPSTREAM Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	15852010	2L_15852010_SNP [dm3] 2L_15852010_SNP [dm6]	G	T	2.999e^-4	0.962	UPSTREAM CG13243 INTERGENIC
3R	10342543	3R_10342543_SNP [dm3] 3R_14516821_SNP [dm6]	T	A	3.021e^-4	0.962	UPSTREAM CG34273 INTRON Pde6
2R	15842194	2R_15842194_DEL [dm3] 2R_19954689_DEL [dm6]	TTGTTTTCGT	T	3.023e^-4	0.962	DOWNSTREAM CG44622 INTERGENIC
3L	2798100	3L_2798100_DEL [dm3] 3L_2798100_DEL [dm6]	GT	G	3.026e^-4	0.962	INTRON CG43444
3L	24001668	3L_24001668_SNP [dm3] 3L_24008568_SNP [dm6]	G	C	3.027e^-4	0.962	INTERGENIC
3R	14505680	3R_14505680_SNP [dm3] 3R_18679958_SNP [dm6]	C	T	3.029e^-4	0.962	SYNONYMOUS_CODING CG7706 UPSTREAM CG7708
2R	9437614	2R_9437614_SNP [dm3] 2R_13550109_SNP [dm6]	G	A	3.030e^-4	0.962	SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3248003	3L_3248003_SNP [dm3] 3L_3248003_SNP [dm6]	C	T	3.036e^-4	0.962	UPSTREAM CG43389 INTERGENIC
3L	2278829	3L_2278829_SNP [dm3] 3L_2278829_SNP [dm6]	C	T	3.040e^-4	0.962	DOWNSTREAM yellow-g2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2333449	X_2333449_SNP [dm3] X_2439416_SNP [dm6]	A	T	3.045e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9532264	2L_9532264_SNP [dm3] 2L_9532264_SNP [dm6]	C	A	3.058e^-4	0.962	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18938715	3L_18938715_SNP [dm3] 3L_18945615_SNP [dm6]	G	T	3.059e^-4	0.962	INTRON CG32204
3R	18919934	3R_18919934_SNP [dm3] 3R_23094212_SNP [dm6]	C	T	3.063e^-4	0.962	SYNONYMOUS_CODING CG17110 UTR_3_PRIME CG6726 DOWNSTREAM CG6726 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3541828	X_3541828_SNP [dm3] X_3647795_SNP [dm6]	G	A	3.069e^-4	0.962	INTRON AstA-R1
2L	15481013	2L_15481013_SNP [dm3] 2L_15481013_SNP [dm6]	A	G	3.077e^-4	0.962	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	3248839	3L_3248839_SNP [dm3] 3L_3248839_SNP [dm6]	C	A	3.079e^-4	0.962	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12914551	2L_12914551_SNP [dm3] 2L_12914551_SNP [dm6]	A	T	3.080e^-4	0.962	INTRON ACXC
2R	11693649	2R_11693649_SNP [dm3] 2R_15806144_SNP [dm6]	T	C	3.086e^-4	0.962	INTRON tun & 1 other
2R	11215154	2R_11215154_SNP [dm3] 2R_15327649_SNP [dm6]	G	A	3.088e^-4	0.962	NON_SYNONYMOUS_CODING CG8160
2R	6699777	2R_6699777_SNP [dm3] 2R_10812272_SNP [dm6]	C	T	3.088e^-4	0.962	UTR_3_PRIME CG12341 DOWNSTREAM mms4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26357057	3R_26357057_DEL [dm3] 3R_30531335_DEL [dm6]	GA	G	3.097e^-4	0.962	INTRON CR45552 EXON CR45553
3R	16739766	3R_16739766_SNP [dm3] 3R_20914044_SNP [dm6]	T	A	3.097e^-4	0.962	UPSTREAM hdly INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2646914	3L_2646914_DEL [dm3] 3L_2646914_DEL [dm6]	GTTGGA	C	3.121e^-4	0.962	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	19409633	3L_19409633_SNP [dm3] 3L_19416533_SNP [dm6]	G	A	3.123e^-4	0.962	INTERGENIC
3L	3248154	3L_3248154_INS [dm3] 3L_3248154_INS [dm6]	T	TGTAT	3.124e^-4	0.962	UTR_5_PRIME CG43389
2R	6718570	2R_6718570_SNP [dm3] 2R_10831065_SNP [dm6]	G	T	3.130e^-4	0.962	INTRON CG12344	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8057479	3L_8057479_SNP [dm3] 3L_8064379_SNP [dm6]	G	A	3.132e^-4	0.962	UTR_5_PRIME Ect4
3L	16088635	3L_16088635_SNP [dm3] 3L_16095535_SNP [dm6]	C	T	3.136e^-4	0.962	UTR_3_PRIME ClC-c DOWNSTREAM CG13074
2R	767897	2R_767897_SNP [dm3] 2R_4880392_SNP [dm6]	T	G	3.147e^-4	0.962	INTERGENIC
3L	22302061	3L_22302061_SNP [dm3] 3L_22308961_SNP [dm6]	A	C	3.153e^-4	0.962	INTRON Ten-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22407172	2L_22407172_SNP [dm3] 2L_22407172_SNP [dm6]	A	G	3.158e^-4	0.962	INTERGENIC
X	21027159	X_21027159_SNP [dm3] X_21156132_SNP [dm6]	A	G	3.162e^-4	0.962	DOWNSTREAM CR32511 EXON CR45499
2L	15105179	2L_15105179_SNP [dm3] 2L_15105179_SNP [dm6]	A	G	3.187e^-4	0.962	INTERGENIC
3R	23520210	3R_23520210_DEL [dm3] 3R_27694488_DEL [dm6]	TTGAACTAACTTCTAAGTGA...	T	3.196e^-4	0.962	UTR_3_PRIME CG43319 UPSTREAM Acp98AB & 1 other
X	17708353	X_17708353_DEL [dm3] X_17814320_DEL [dm6]	TAAAG	T	3.196e^-4	0.962	DOWNSTREAM OdsH INTERGENIC
2R	14397507	2R_14397507_SNP [dm3] 2R_18510002_SNP [dm6]	G	A	3.198e^-4	0.962	INTERGENIC
2R	8464815	2R_8464815_SNP [dm3] 2R_12577310_SNP [dm6]	G	T	3.201e^-4	0.962	INTRON Sin3A
3L	13859531	3L_13859531_SNP [dm3] 3L_13866431_SNP [dm6]	T	A	3.204e^-4	0.962	DOWNSTREAM dysc INTRON CG8745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13914106	2L_13914106_SNP [dm3] 2L_13914106_SNP [dm6]	T	A	3.214e^-4	0.962	UPSTREAM Ance-3 INTERGENIC
X	9733871	X_9733871_SNP [dm3] X_9839838_SNP [dm6]	G	A	3.217e^-4	0.962	INTRON CG32698
2L	4546305	2L_4546305_SNP [dm3] 2L_4546305_SNP [dm6]	G	T	3.219e^-4	0.962	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4505329	2L_4505329_SNP [dm3] 2L_4505329_SNP [dm6]	C	G	3.229e^-4	0.962	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9312480	2L_9312480_SNP [dm3] 2L_9312480_SNP [dm6]	C	T	3.232e^-4	0.962	INTERGENIC
3R	10421705	3R_10421705_DEL [dm3] 3R_14595983_DEL [dm6]	TT	T	3.233e^-4	0.962	UPSTREAM stumps INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	10054726	2L_10054726_SNP [dm3] 2L_10054726_SNP [dm6]	C	G	3.244e^-4	0.962	DOWNSTREAM CR44875 INTRON Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
3L	2281613	3L_2281613_SNP [dm3] 3L_2281613_SNP [dm6]	G	T	3.245e^-4	0.962	INTERGENIC
3R	10342547	3R_10342547_SNP [dm3] 3R_14516825_SNP [dm6]	C	T	3.245e^-4	0.962	UPSTREAM CG34273 INTRON Pde6
2L	18865403	2L_18865403_SNP [dm3] 2L_18865403_SNP [dm6]	C	G	3.254e^-4	0.962	INTRON tup	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	15062239	3R_15062239_SNP [dm3] 3R_19236517_SNP [dm6]	C	T	3.272e^-4	0.962	INTRON unc79
2R	8897575	2R_8897575_SNP [dm3] 2R_13010070_SNP [dm6]	C	T	3.275e^-4	0.962	INTERGENIC
2L	15998731	2L_15998731_SNP [dm3] 2L_15998731_SNP [dm6]	G	A	3.278e^-4	0.962	INTERGENIC
2L	1512623	2L_1512623_SNP [dm3] 2L_1512623_SNP [dm6]	A	G	3.283e^-4	0.962	INTERGENIC
X	2428991	X_2428991_SNP [dm3] X_2534958_SNP [dm6]	A	G	3.283e^-4	0.962	INTRON trol
2L	3081574	2L_3081574_SNP [dm3] 2L_3081574_SNP [dm6]	A	T	3.286e^-4	0.962	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4507874	2L_4507874_SNP [dm3] 2L_4507874_SNP [dm6]	G	A	3.289e^-4	0.962	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17747861	2R_17747861_DEL [dm3] 2R_21860356_DEL [dm6]	AAG	A	3.292e^-4	0.962	UPSTREAM CG9294 INTERGENIC
2L	9230375	2L_9230375_SNP [dm3] 2L_9230375_SNP [dm6]	G	A	3.308e^-4	0.962	INTRON tai	TF binding site BDTNP1_TFBS_twi
2R	16975182	2R_16975182_SNP [dm3] 2R_21087677_SNP [dm6]	A	G	3.308e^-4	0.962	DOWNSTREAM Rbpn-5 INTRON Treh	TF binding site mE1_TFBS_cad
2R	2418283	2R_2418283_SNP [dm3] 2R_6530778_SNP [dm6]	T	C	3.311e^-4	0.962	INTRON jing
2L	1527248	2L_1527248_DEL [dm3] 2L_1527248_DEL [dm6]	CC	C	3.311e^-4	0.962	INTERGENIC
3R	19243874	3R_19243874_SNP [dm3] 3R_23418152_SNP [dm6]	G	T	3.323e^-4	0.962	INTRON CG4374
3L	12504730	3L_12504730_SNP [dm3] 3L_12511630_SNP [dm6]	C	G	3.326e^-4	0.962	SYNONYMOUS_CODING sti
3L	19410987	3L_19410987_DEL [dm3] 3L_19417887_DEL [dm6]	GTGTGGG	G	3.334e^-4	0.962	INTERGENIC
2L	12362366	2L_12362366_SNP [dm3] 2L_12362366_SNP [dm6]	T	C	3.338e^-4	0.962	INTRON bru-2
2L	11346542	2L_11346542_SNP [dm3] 2L_11346542_SNP [dm6]	C	T	3.346e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	12534606	3L_12534606_SNP [dm3] 3L_12541506_SNP [dm6]	T	C	3.351e^-4	0.962	UPSTREAM CR43612 INTRON sowah
3R	8063889	3R_8063889_SNP [dm3] 3R_12238167_SNP [dm6]	G	A	3.366e^-4	0.962	NON_SYNONYMOUS_CODING Cyp313a3
X	11283558	X_11283558_SNP [dm3] X_11389525_SNP [dm6]	G	T	3.368e^-4	0.962	UPSTREAM dlg1 DOWNSTREAM dlg1 INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16023566	X_16023566_SNP [dm3] X_16129533_SNP [dm6]	A	T	3.370e^-4	0.962	INTRON disco-r
3L	7277653	3L_7277653_SNP [dm3] 3L_7284553_SNP [dm6]	G	T	3.375e^-4	0.962	INTRON unc-13-4A
X	12805357	X_12805357_SNP [dm3] X_12911324_SNP [dm6]	T	C	3.399e^-4	0.962	INTRON CG4645
3L	3248794	3L_3248794_SNP [dm3] 3L_3248794_SNP [dm6]	T	A	3.401e^-4	0.962	NON_SYNONYMOUS_CODING CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15578022	X_15578022_DEL [dm3] X_15683989_DEL [dm6]	ATGTGTCAC	A	3.408e^-4	0.962	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11366401	3L_11366401_SNP [dm3] 3L_11373301_SNP [dm6]	T	A	3.413e^-4	0.962	INTERGENIC
3R	5251595	3R_5251595_SNP [dm3] 3R_9425873_SNP [dm6]	C	T	3.416e^-4	0.962	INTRON ps
X	10511450	X_10511450_SNP [dm3] X_10617417_SNP [dm6]	A	G	3.421e^-4	0.962	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21015697	3R_21015697_SNP [dm3] 3R_25189975_SNP [dm6]	C	T	3.422e^-4	0.962	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10103302	2R_10103302_SNP [dm3] 2R_14215797_SNP [dm6]	G	C	3.424e^-4	0.962	DOWNSTREAM mir-308 INTRON RpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	10488016	3L_10488016_SNP [dm3] 3L_10494916_SNP [dm6]	A	T	3.427e^-4	0.962	INTRON A2bp1
2R	17747866	2R_17747866_DEL [dm3] 2R_21860361_DEL [dm6]	TATATAGAATGT...	T	3.430e^-4	0.962	UPSTREAM CG9294 INTERGENIC
3R	22100126	3R_22100126_SNP [dm3] 3R_26274404_SNP [dm6]	T	G	3.435e^-4	0.962	INTRON CG6154
3L	8636928	3L_8636928_DEL [dm3] 3L_8643828_DEL [dm6]	CC	C	3.437e^-4	0.962	DOWNSTREAM Cpr66D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15471182	2L_15471182_SNP [dm3] 2L_15471182_SNP [dm6]	T	C	3.438e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16482329	2R_16482329_SNP [dm3] 2R_20594824_SNP [dm6]	A	G	3.439e^-4	0.962	INTRON bl
2R	10665060	2R_10665060_SNP [dm3] 2R_14777555_SNP [dm6]	T	A	3.445e^-4	0.962	INTRON kn	regulatory region REDfly_CRMs
3L	11911426	3L_11911426_SNP [dm3] 3L_11918326_SNP [dm6]	T	A	3.448e^-4	0.962	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	2343982	3L_2343982_SNP [dm3] 3L_2343982_SNP [dm6]	G	A	3.451e^-4	0.962	SYNONYMOUS_CODING MsR1	TF binding site mE1_TFBS_chinmo
2R	15552513	2R_15552513_SNP [dm3] 2R_19665008_SNP [dm6]	T	G	3.462e^-4	0.962	DOWNSTREAM hrg INTRON hrg	TF binding site BDTNP1_TFBS_dl
3L	2681902	3L_2681902_INS [dm3] 3L_2681902_INS [dm6]	A	AATGAT	3.479e^-4	0.962	INTRON Fife
2L	5386519	2L_5386519_SNP [dm3] 2L_5386519_SNP [dm6]	C	T	3.479e^-4	0.962	INTERGENIC
3L	402006	3L_402006_SNP [dm3] 3L_402006_SNP [dm6]	A	C	3.484e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19232142	X_19232142_SNP [dm3] X_19338109_SNP [dm6]	A	C	3.492e^-4	0.962	INTRON nAChRalpha7	TF binding site mE1_TFBS_zfh1
3R	23977629	3R_23977629_SNP [dm3] 3R_28151907_SNP [dm6]	A	G	3.494e^-4	0.962	INTRON CG34354
3L	2780281	3L_2780281_SNP [dm3] 3L_2780281_SNP [dm6]	C	T	3.494e^-4	0.962	SYNONYMOUS_CODING Atg2 UPSTREAM mRpS35	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14340278	2R_14340278_SNP [dm3] 2R_18452773_SNP [dm6]	T	G	3.507e^-4	0.962	UTR_3_PRIME CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3248846	3L_3248846_SNP [dm3] 3L_3248846_SNP [dm6]	C	T	3.518e^-4	0.962	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13688125	3R_13688125_SNP [dm3] 3R_17862403_SNP [dm6]	T	C	3.521e^-4	0.962	INTRON tinc
2L	11350632	2L_11350632_SNP [dm3] 2L_11350632_SNP [dm6]	T	G	3.531e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs
3R	5254505	3R_5254505_SNP [dm3] 3R_9428783_SNP [dm6]	G	A	3.539e^-4	0.962	INTRON ps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13310140	3L_13310140_SNP [dm3] 3L_13317040_SNP [dm6]	T	C	3.551e^-4	0.962	INTERGENIC
X	11180348	X_11180348_SNP [dm3] X_11286315_SNP [dm6]	A	C	3.559e^-4	0.962	INTRON CG44422
3L	12534623	3L_12534623_SNP [dm3] 3L_12541523_SNP [dm6]	T	A	3.565e^-4	0.962	UPSTREAM CR43612 INTRON sowah
3R	19559269	3R_19559269_SNP [dm3] 3R_23733547_SNP [dm6]	T	A	3.573e^-4	0.962	UTR_5_PRIME Hmgcr UPSTREAM Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2593048	2L_2593048_SNP [dm3] 2L_2593048_SNP [dm6]	G	A	3.579e^-4	0.962	DOWNSTREAM CG15394 INTERGENIC
3L	4173043	3L_4173043_SNP [dm3] 3L_4173043_SNP [dm6]	T	C	3.579e^-4	0.962	SYNONYMOUS_CODING Ero1L UPSTREAM CG18675
3L	18489265	3L_18489265_SNP [dm3] 3L_18496165_SNP [dm6]	C	T	3.588e^-4	0.962	INTRON AstC-R2
3R	13718983	3R_13718983_SNP [dm3] 3R_17893261_SNP [dm6]	G	A	3.595e^-4	0.962	INTRON Rim
2R	12213861	2R_12213861_SNP [dm3] 2R_16326356_SNP [dm6]	G	A	3.601e^-4	0.962	SYNONYMOUS_CODING Vha44
3L	21621463	3L_21621463_SNP [dm3] 3L_21628363_SNP [dm6]	G	T	3.606e^-4	0.962	UTR_3_PRIME CG11306 & 1 other DOWNSTREAM CG11306
2R	18753662	2R_18753662_SNP [dm3] 2R_22866139_SNP [dm6]	C	A	3.613e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15062247	3R_15062247_SNP [dm3] 3R_19236525_SNP [dm6]	G	A	3.615e^-4	0.962	INTRON unc79
3L	16269817	3L_16269817_SNP [dm3] 3L_16276717_SNP [dm6]	T	A	3.617e^-4	0.962	UPSTREAM CG13065 INTERGENIC
3R	26124539	3R_26124539_SNP [dm3] 3R_30298817_SNP [dm6]	T	A	3.618e^-4	0.962	INTRON hdc
3R	18457579	3R_18457579_INS [dm3] 3R_22631857_INS [dm6]	T	TGATTATATTGATCGACTTT...	3.625e^-4	0.962	INTRON loco	regulatory region REDfly_CRMs
2L	13822495	2L_13822495_SNP [dm3] 2L_13822495_SNP [dm6]	T	G	3.630e^-4	0.962	INTRON b
3L	10487952	3L_10487952_SNP [dm3] 3L_10494852_SNP [dm6]	G	A	3.633e^-4	0.962	INTRON A2bp1
2L	15441484	2L_15441484_SNP [dm3] 2L_15441484_SNP [dm6]	T	A	3.638e^-4	0.962	UPSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10897505	3L_10897505_DEL [dm3] 3L_10904405_DEL [dm6]	AAAGGA	A	3.638e^-4	0.962	INTERGENIC
2L	873155	2L_873155_SNP [dm3] 2L_873155_SNP [dm6]	G	A	3.645e^-4	0.962	NON_SYNONYMOUS_CODING PNUTS	TF binding site mE1_TFBS_sens
2R	19246024	2R_19246024_SNP [dm3] 2R_23358501_SNP [dm6]	A	G	3.649e^-4	0.962	UTR_3_PRIME CG9875 UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
2R	19246071	2R_19246071_SNP [dm3] 2R_23358548_SNP [dm6]	T	A	3.649e^-4	0.962	UPSTREAM CG3500 & 2 others DOWNSTREAM CG9875 EXON CR44168
3R	22895481	3R_22895481_INS [dm3] 3R_27069759_INS [dm6]	T	TGGCT	3.650e^-4	0.962	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16318998	2R_16318998_SNP [dm3] 2R_20431493_SNP [dm6]	C	T	3.657e^-4	0.962	INTRON CG12484
3L	8102452	3L_8102452_SNP [dm3] 3L_8109352_SNP [dm6]	C	T	3.659e^-4	0.962	SYNONYMOUS_CODING fan DOWNSTREAM Ect4	TF binding site mE1_TFBS_bab1
2L	8193426	2L_8193426_SNP [dm3] 2L_8193426_SNP [dm6]	A	G	3.664e^-4	0.962	UTR_3_PRIME CG8475 INTRON CG8475
3R	18944966	3R_18944966_SNP [dm3] 3R_23119244_SNP [dm6]	T	A	3.666e^-4	0.962	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl
3L	12504718	3L_12504718_SNP [dm3] 3L_12511618_SNP [dm6]	A	G	3.673e^-4	0.962	SYNONYMOUS_CODING sti
2L	2906495	2L_2906495_SNP [dm3] 2L_2906495_SNP [dm6]	C	G	3.676e^-4	0.962	INTRON lilli
2R	12213600	2R_12213600_SNP [dm3] 2R_16326095_SNP [dm6]	G	A	3.681e^-4	0.962	INTRON Vha44
2L	15442475	2L_15442475_SNP [dm3] 2L_15442475_SNP [dm6]	A	C	3.686e^-4	0.962	DOWNSTREAM CR44862 INTERGENIC
2L	14996560	2L_14996560_SNP [dm3] 2L_14996560_SNP [dm6]	T	C	3.687e^-4	0.962	INTRON mol	TF binding site BDTNP1_TFBS_dl
2R	747648	2R_747648_SNP [dm3] 2R_4860143_SNP [dm6]	C	G	3.690e^-4	0.962	INTERGENIC	transposable element FlyBase
3R	18957943	3R_18957943_INS [dm3] 3R_23132221_INS [dm6]	G	GCTTGCCAG	3.693e^-4	0.962	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11759968	3L_11759968_SNP [dm3] 3L_11766868_SNP [dm6]	T	C	3.698e^-4	0.962	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18061591	2R_18061591_SNP [dm3] 2R_22174086_SNP [dm6]	A	C	3.705e^-4	0.962	SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site mE1_TFBS_sens
2L	19734288	2L_19734288_SNP [dm3] 2L_19734288_SNP [dm6]	T	G	3.713e^-4	0.962	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
2L	19734291	2L_19734291_SNP [dm3] 2L_19734291_SNP [dm6]	G	A	3.719e^-4	0.962	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
2L	3969898	2L_3969898_SNP [dm3] 2L_3969898_SNP [dm6]	G	A	3.721e^-4	0.962	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12674677	3L_12674677_SNP [dm3] 3L_12681577_SNP [dm6]	T	G	3.727e^-4	0.962	INTERGENIC
2L	13355446	2L_13355446_SNP [dm3] 2L_13355446_SNP [dm6]	T	A	3.737e^-4	0.962	UPSTREAM CG9395 INTERGENIC
2R	5282793	2R_5282793_SNP [dm3] 2R_9395288_SNP [dm6]	G	T	3.739e^-4	0.962	DOWNSTREAM CG8800 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3R	13426232	3R_13426232_SNP [dm3] 3R_17600510_SNP [dm6]	G	T	3.741e^-4	0.962	INTERGENIC
2R	10288521	2R_10288521_SNP [dm3] 2R_14401016_SNP [dm6]	A	C	3.742e^-4	0.962	INTERGENIC
2R	6227808	2R_6227808_SNP [dm3] 2R_10340303_SNP [dm6]	T	C	3.744e^-4	0.962	INTRON CG42732
X	14791804	X_14791804_SNP [dm3] X_14897771_SNP [dm6]	C	T	3.771e^-4	0.962	UPSTREAM CG9514 INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4701186	3L_4701186_SNP [dm3] 3L_4701186_SNP [dm6]	C	T	3.773e^-4	0.962	INTRON RhoGEF64C
3L	11321539	3L_11321539_SNP [dm3] 3L_11328439_SNP [dm6]	T	A	3.782e^-4	0.962	INTERGENIC
X	13321111	X_13321111_SNP [dm3] X_13427078_SNP [dm6]	C	G	3.788e^-4	0.962	INTERGENIC
3L	10388893	3L_10388893_SNP [dm3] 3L_10395793_SNP [dm6]	G	A	3.791e^-4	0.962	INTERGENIC
X	15578098	X_15578098_SNP [dm3] X_15684065_SNP [dm6]	T	G	3.792e^-4	0.962	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17587037	X_17587037_INS [dm3] X_17693004_INS [dm6]	A	AA	3.800e^-4	0.962	INTRON chas
2R	11731849	2R_11731849_SNP [dm3] 2R_15844344_SNP [dm6]	G	A	3.802e^-4	0.962	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
X	3163858	X_3163858_SNP [dm3] X_3269825_SNP [dm6]	C	G	3.807e^-4	0.962	INTRON dnc
X	4290218	X_4290218_SNP [dm3] X_4396185_SNP [dm6]	A	G	3.816e^-4	0.962	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12218893	3R_12218893_SNP [dm3] 3R_16393171_SNP [dm6]	C	A	3.818e^-4	0.962	INTRON ss	regulatory region REDfly_CRMs
2R	8448065	2R_8448065_SNP [dm3] 2R_12560560_SNP [dm6]	C	T	3.819e^-4	0.962	SYNONYMOUS_CODING fra
3R	19833225	3R_19833225_SNP [dm3] 3R_24007503_SNP [dm6]	C	T	3.823e^-4	0.962	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17981754	3L_17981754_SNP [dm3] 3L_17988654_SNP [dm6]	C	A	3.826e^-4	0.962	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20039112	3R_20039112_SNP [dm3] 3R_24213390_SNP [dm6]	A	G	3.827e^-4	0.962	INTRON twin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	5370822	2L_5370822_SNP [dm3] 2L_5370822_SNP [dm6]	C	T	3.836e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5653653	2R_5653653_SNP [dm3] 2R_9766148_SNP [dm6]	T	C	3.846e^-4	0.962	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
3L	6733513	3L_6733513_SNP [dm3] 3L_6740413_SNP [dm6]	G	A	3.847e^-4	0.962	UTR_3_PRIME dikar INTRON dikar
3L	2173998	3L_2173998_SNP [dm3] 3L_2173998_SNP [dm6]	G	A	3.847e^-4	0.962	INTRON CG15820	TF binding site mE1_TFBS_cad
3R	7164558	3R_7164558_SNP [dm3] 3R_11338836_SNP [dm6]	G	C	3.849e^-4	0.962	INTRON pros
3L	7992526	3L_7992526_SNP [dm3] 3L_7999426_SNP [dm6]	T	A	3.851e^-4	0.962	INTRON nmo
2R	4106408	2R_4106408_SNP [dm3] 2R_8218903_SNP [dm6]	G	A	3.856e^-4	0.962	SYNONYMOUS_CODING LRP1
X	12676211	X_12676211_INS [dm3] X_12782178_INS [dm6]	T	CTA	3.869e^-4	0.962	INTRON CG32647
2R	2960560	2R_2960560_SNP [dm3] 2R_7073055_SNP [dm6]	A	G	3.877e^-4	0.962	UTR_3_PRIME CG12831
2L	15281712	2L_15281712_SNP [dm3] 2L_15281712_SNP [dm6]	A	T	3.880e^-4	0.962	INTERGENIC
3L	2440041	3L_2440041_SNP [dm3] 3L_2440041_SNP [dm6]	T	C	3.888e^-4	0.962	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2205687	2L_2205687_SNP [dm3] 2L_2205687_SNP [dm6]	G	A	3.895e^-4	0.962	DOWNSTREAM CG33124 INTRON CG31668
3L	15795311	3L_15795311_SNP [dm3] 3L_15802211_SNP [dm6]	G	A	3.909e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2218863	3L_2218863_SNP [dm3] 3L_2218863_SNP [dm6]	A	T	3.911e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17018712	2R_17018712_SNP [dm3] 2R_21131207_SNP [dm6]	G	A	3.934e^-4	0.962	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
2R	6827805	2R_6827805_SNP [dm3] 2R_10940300_SNP [dm6]	T	C	3.935e^-4	0.962	UTR_3_PRIME Spn47C
3R	19696827	3R_19696827_SNP [dm3] 3R_23871105_SNP [dm6]	T	C	3.938e^-4	0.962	INTRON Pli
3R	25565763	3R_25565763_SNP [dm3] 3R_29740041_SNP [dm6]	A	G	3.944e^-4	0.962	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12534577	3L_12534577_SNP [dm3] 3L_12541477_SNP [dm6]	C	A	3.946e^-4	0.962	UPSTREAM CR43612 INTRON sowah
3L	8641347	3L_8641347_SNP [dm3] 3L_8648247_SNP [dm6]	A	G	3.953e^-4	0.962	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17504293	2R_17504293_SNP [dm3] 2R_21616788_SNP [dm6]	G	T	3.959e^-4	0.962	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15436890	2L_15436890_SNP [dm3] 2L_15436890_SNP [dm6]	C	T	3.960e^-4	0.962	DOWNSTREAM CR44861 INTERGENIC
3R	9828084	3R_9828084_SNP [dm3] 3R_14002362_SNP [dm6]	T	A	3.961e^-4	0.962	INTRON rdx
2L	2863889	2L_2863889_SNP [dm3] 2L_2863889_SNP [dm6]	T	G	3.961e^-4	0.962	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13158281	3L_13158281_DEL [dm3] 3L_13165181_DEL [dm6]	TGCCTTTATATAT...	T	3.962e^-4	0.962	INTERGENIC
2R	2597725	2R_2597725_SNP [dm3] 2R_6710220_SNP [dm6]	A	G	3.963e^-4	0.962	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	4469792	2L_4469792_SNP [dm3] 2L_4469792_SNP [dm6]	T	C	3.965e^-4	0.962	INTRON ine	TF binding site mE1_TFBS_cad
3R	4948072	3R_4948072_SNP [dm3] 3R_9122350_SNP [dm6]	T	G	3.989e^-4	0.962	INTRON pum
2L	2866877	2L_2866877_SNP [dm3] 2L_2866877_SNP [dm6]	T	C	3.997e^-4	0.962	SYNONYMOUS_CODING CG2991
2R	758804	2R_758804_SNP [dm3] 2R_4871299_SNP [dm6]	T	A	4.003e^-4	0.962	INTERGENIC
3L	20483377	3L_20483377_SNP [dm3] 3L_20490277_SNP [dm6]	A	T	4.006e^-4	0.962	INTRON ZnT77C
3R	16998614	3R_16998614_SNP [dm3] 3R_21172892_SNP [dm6]	T	C	4.011e^-4	0.962	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10818874	X_10818874_SNP [dm3] X_10924841_SNP [dm6]	G	A	4.016e^-4	0.962	SYNONYMOUS_CODING v
3L	4170705	3L_4170705_SNP [dm3] 3L_4170705_SNP [dm6]	A	G	4.019e^-4	0.962	SYNONYMOUS_CODING Ero1L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13891310	2L_13891310_SNP [dm3] 2L_13891310_SNP [dm6]	G	A	4.019e^-4	0.962	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_HSA
3R	12990668	3R_12990668_SNP [dm3] 3R_17164946_SNP [dm6]	G	A	4.023e^-4	0.962	INTRON Mur89F
2L	5384303	2L_5384303_SNP [dm3] 2L_5384303_SNP [dm6]	A	G	4.028e^-4	0.962	INTERGENIC
X	16225151	X_16225151_SNP [dm3] X_16331118_SNP [dm6]	A	C	4.029e^-4	0.962	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12362359	2L_12362359_SNP [dm3] 2L_12362359_SNP [dm6]	A	T	4.039e^-4	0.962	INTRON bru-2
3L	14900622	3L_14900622_SNP [dm3] 3L_14907522_SNP [dm6]	T	A	4.042e^-4	0.962	INTRON DCX-EMAP	TF binding site BDTNP1_TFBS_twi
2L	4172499	2L_4172499_SNP [dm3] 2L_4172499_SNP [dm6]	A	G	4.046e^-4	0.962	INTERGENIC
3L	14889729	3L_14889729_SNP [dm3] 3L_14896629_SNP [dm6]	C	G	4.047e^-4	0.962	INTERGENIC
X	11283112	X_11283112_SNP [dm3] X_11389079_SNP [dm6]	T	C	4.055e^-4	0.962	UTR_3_PRIME dlg1 UPSTREAM dlg1 INTRON dlg1	TF binding site BDTNP1_TFBS_dl
2R	7267595	2R_7267595_SNP [dm3] 2R_11380090_SNP [dm6]	C	T	4.057e^-4	0.962	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
3R	9028150	3R_9028150_SNP [dm3] 3R_13202428_SNP [dm6]	C	T	4.070e^-4	0.962	INTERGENIC
X	7683342	X_7683342_SNP [dm3] X_7789309_SNP [dm6]	G	A	4.074e^-4	0.962	INTERGENIC
2L	7673304	2L_7673304_SNP [dm3] 2L_7673304_SNP [dm6]	T	C	4.074e^-4	0.962	INTRON Slob & 1 other
2L	13355523	2L_13355523_SNP [dm3] 2L_13355523_SNP [dm6]	A	T	4.075e^-4	0.962	UPSTREAM CG9395 INTERGENIC
X	21921402	X_21921402_SNP [dm3] X_22519566_SNP [dm6]	T	A	4.082e^-4	0.962	INTRON CG17600
3R	9414981	3R_9414981_SNP [dm3] 3R_13589259_SNP [dm6]	C	T	4.087e^-4	0.962	DOWNSTREAM CG14370 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9791057	2R_9791057_SNP [dm3] 2R_13903552_SNP [dm6]	C	T	4.088e^-4	0.962	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	1856914	3L_1856914_SNP [dm3] 3L_1856914_SNP [dm6]	T	C	4.092e^-4	0.962	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6684961	2R_6684961_SNP [dm3] 2R_10797456_SNP [dm6]	G	A	4.094e^-4	0.962	INTRON CG33144
3L	15794408	3L_15794408_SNP [dm3] 3L_15801308_SNP [dm6]	G	A	4.094e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12318801	2L_12318801_SNP [dm3] 2L_12318801_SNP [dm6]	T	C	4.100e^-4	0.962	INTERGENIC
X	2333165	X_2333165_SNP [dm3] X_2439132_SNP [dm6]	C	T	4.103e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11261642	2L_11261642_SNP [dm3] 2L_11261642_SNP [dm6]	G	C	4.110e^-4	0.962	NON_SYNONYMOUS_CODING cmet DOWNSTREAM ab
3L	18310333	3L_18310333_SNP [dm3] 3L_18317233_SNP [dm6]	G	T	4.117e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2141265	X_2141265_SNP [dm3] X_2247232_SNP [dm6]	C	T	4.119e^-4	0.962	SYNONYMOUS_CODING Or2a DOWNSTREAM crn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10685679	3R_10685679_SNP [dm3] 3R_14859957_SNP [dm6]	C	G	4.127e^-4	0.962	UTR_5_PRIME btsz
2L	13911853	2L_13911853_SNP [dm3] 2L_13911853_SNP [dm6]	A	G	4.129e^-4	0.962	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16294892	X_16294892_SNP [dm3] X_16400859_SNP [dm6]	C	A	4.133e^-4	0.962	SYNONYMOUS_CODING CG9981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16269916	3L_16269916_SNP [dm3] 3L_16276816_SNP [dm6]	A	G	4.133e^-4	0.962	UPSTREAM CG13065 INTERGENIC
3L	7948818	3L_7948818_SNP [dm3] 3L_7955718_SNP [dm6]	A	T	4.137e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18366963	2R_18366963_SNP [dm3] 2R_22479458_SNP [dm6]	T	A	4.144e^-4	0.962	INTRON CG4752	TF binding site mE1_TFBS_cad
2L	13813382	2L_13813382_SNP [dm3] 2L_13813382_SNP [dm6]	A	G	4.146e^-4	0.962	UPSTREAM Sos & 1 other DOWNSTREAM CG16865 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12423604	3L_12423604_SNP [dm3] 3L_12430504_SNP [dm6]	C	T	4.146e^-4	0.962	INTRON toe
X	11183044	X_11183044_SNP [dm3] X_11289011_SNP [dm6]	A	G	4.161e^-4	0.962	INTRON CG44422
2L	2372081	2L_2372081_SNP [dm3] 2L_2372081_SNP [dm6]	T	A	4.175e^-4	0.962	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
3R	13032464	3R_13032464_SNP [dm3] 3R_17206742_SNP [dm6]	T	C	4.189e^-4	0.962	INTERGENIC
3L	3613582	3L_3613582_SNP [dm3] 3L_3613582_SNP [dm6]	C	T	4.192e^-4	0.962	INTRON CG10359
3R	19832863	3R_19832863_INS [dm3] 3R_24007141_INS [dm6]	C	CCAC	4.199e^-4	0.962	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	2780831	3L_2780831_SNP [dm3] 3L_2780831_SNP [dm6]	T	C	4.210e^-4	0.962	UPSTREAM mRpS35 DOWNSTREAM Atg2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	8827071	3L_8827071_SNP [dm3] 3L_8833971_SNP [dm6]	A	T	4.217e^-4	0.962	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	19132565	3R_19132565_SNP [dm3] 3R_23306843_SNP [dm6]	C	A	4.242e^-4	0.962	INTRON pnt
3L	18310336	3L_18310336_SNP [dm3] 3L_18317236_SNP [dm6]	T	A	4.247e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6302979	2L_6302979_SNP [dm3] 2L_6302979_SNP [dm6]	C	T	4.249e^-4	0.962	INTRON Ddr
2L	2216295	2L_2216295_SNP [dm3] 2L_2216295_SNP [dm6]	A	G	4.253e^-4	0.962	UTR_5_PRIME CG10880 UPSTREAM mio DOWNSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5621770	2L_5621770_SNP [dm3] 2L_5621770_SNP [dm6]	A	G	4.254e^-4	0.962	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo
X	10075632	X_10075632_SNP [dm3] X_10181599_SNP [dm6]	T	C	4.255e^-4	0.962	INTRON CG43902 & 1 other
2L	13814453	2L_13814453_SNP [dm3] 2L_13814453_SNP [dm6]	G	A	4.263e^-4	0.962	SYNONYMOUS_CODING Sos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15437643	2L_15437643_SNP [dm3] 2L_15437643_SNP [dm6]	C	G	4.274e^-4	0.962	INTERGENIC
2R	11693650	2R_11693650_SNP [dm3] 2R_15806145_SNP [dm6]	C	T	4.279e^-4	0.962	INTRON tun & 1 other
X	15578017	X_15578017_DEL [dm3] X_15683984_DEL [dm6]	TC	T	4.291e^-4	0.962	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15959455	2R_15959455_SNP [dm3] 2R_20071950_SNP [dm6]	C	G	4.299e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9312491	2L_9312491_INS [dm3] 2L_9312491_INS [dm6]	T	TTATTTCTTGT...	4.301e^-4	0.962	INTERGENIC
2R	12131940	2R_12131940_SNP [dm3] 2R_16244435_SNP [dm6]	G	A	4.305e^-4	0.962	INTRON CngA	TF binding site mE1_TFBS_inv
3L	9230713	3L_9230713_SNP [dm3] 3L_9237613_SNP [dm6]	G	T	4.316e^-4	0.962	UPSTREAM CG4483 INTERGENIC
3R	11063957	3R_11063957_SNP [dm3] 3R_15238235_SNP [dm6]	G	C	4.320e^-4	0.962	INTRON tefu
3L	13318565	3L_13318565_SNP [dm3] 3L_13325465_SNP [dm6]	C	T	4.327e^-4	0.962	UPSTREAM CR44558 INTERGENIC
3L	6616627	3L_6616627_SNP [dm3] 3L_6623527_SNP [dm6]	T	G	4.342e^-4	0.962	UPSTREAM GluRIA INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8750126	2L_8750126_SNP [dm3] 2L_8750126_SNP [dm6]	G	A	4.343e^-4	0.962	INTERGENIC
2R	18062347	2R_18062347_SNP [dm3] 2R_22174842_SNP [dm6]	T	C	4.353e^-4	0.962	UPSTREAM CG6758 & 1 other DOWNSTREAM CR45151 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9946673	2L_9946673_SNP [dm3] 2L_9946673_SNP [dm6]	C	A	4.356e^-4	0.962	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	2628678	2R_2628678_SNP [dm3] 2R_6741173_SNP [dm6]	G	T	4.358e^-4	0.962	UPSTREAM l_2_01289 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	1806936	3L_1806936_SNP [dm3] 3L_1806936_SNP [dm6]	T	G	4.364e^-4	0.962	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10409220	3R_10409220_SNP [dm3] 3R_14583498_SNP [dm6]	G	A	4.377e^-4	0.962	INTRON stumps
2L	4751586	2L_4751586_SNP [dm3] 2L_4751586_SNP [dm6]	C	T	4.379e^-4	0.962	INTRON CG15630
2R	9755418	2R_9755418_SNP [dm3] 2R_13867913_SNP [dm6]	A	G	4.380e^-4	0.962	INTRON shot
X	13446701	X_13446701_SNP [dm3] X_13552668_SNP [dm6]	C	T	4.382e^-4	0.962	UTR_3_PRIME CG11816 DOWNSTREAM CG11816
3R	19833127	3R_19833127_SNP [dm3] 3R_24007405_SNP [dm6]	A	G	4.393e^-4	0.962	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11106819	3R_11106819_SNP [dm3] 3R_15281097_SNP [dm6]	G	A	4.394e^-4	0.962	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6725329	3L_6725329_SNP [dm3] 3L_6732229_SNP [dm6]	G	T	4.395e^-4	0.962	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17549505	X_17549505_SNP [dm3] X_17655472_SNP [dm6]	T	G	4.395e^-4	0.962	INTRON IntS2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21775186	3R_21775186_SNP [dm3] 3R_25949464_SNP [dm6]	T	C	4.401e^-4	0.962	INTRON CCAP-R
X	10515461	X_10515461_DEL [dm3] X_10621428_DEL [dm6]	CTGCGAC	C	4.405e^-4	0.962	DOWNSTREAM Rab9Db INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5428985	2L_5428985_DEL [dm3] 2L_5428985_DEL [dm6]	TAGTCATCTT	T	4.413e^-4	0.962	INTERGENIC
X	12674544	X_12674544_SNP [dm3] X_12780511_SNP [dm6]	T	C	4.414e^-4	0.962	INTRON CG32647
3L	12635140	3L_12635140_SNP [dm3] 3L_12642040_SNP [dm6]	A	C	4.422e^-4	0.962	SPLICE_SITE_REGION CR32111 INTRON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25066247	3R_25066247_DEL [dm3] 3R_29240525_DEL [dm6]	ATGTCTCATCTCTGCACGTT...	A	4.429e^-4	0.962	UPSTREAM CG31427 DOWNSTREAM CG31445 INTERGENIC
3L	14564000	3L_14564000_SNP [dm3] 3L_14570900_SNP [dm6]	T	C	4.434e^-4	0.962	INTERGENIC
3R	14369965	3R_14369965_SNP [dm3] 3R_18544243_SNP [dm6]	G	A	4.442e^-4	0.962	INTRON fru
2R	5653651	2R_5653651_SNP [dm3] 2R_9766146_SNP [dm6]	C	T	4.445e^-4	0.962	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
2R	13729937	2R_13729937_SNP [dm3] 2R_17842432_SNP [dm6]	T	G	4.454e^-4	0.962	UTR_3_PRIME grh DOWNSTREAM grh
3L	15807390	3L_15807390_SNP [dm3] 3L_15814290_SNP [dm6]	G	A	4.465e^-4	0.962	INTRON fwe
3L	14640527	3L_14640527_SNP [dm3] 3L_14647427_SNP [dm6]	A	G	4.475e^-4	0.962	INTRON dlp
2L	7673365	2L_7673365_SNP [dm3] 2L_7673365_SNP [dm6]	G	T	4.487e^-4	0.962	INTRON Slob & 1 other
3L	11995043	3L_11995043_SNP [dm3] 3L_12001943_SNP [dm6]	C	A	4.487e^-4	0.962	UPSTREAM Pop2 INTRON Pop2	TF binding site BDTNP1_TFBS_dl
2L	9542941	2L_9542941_SNP [dm3] 2L_9542941_SNP [dm6]	C	T	4.494e^-4	0.962	UTR_5_PRIME Cpr30B DOWNSTREAM CG17855
X	20291198	X_20291198_SNP [dm3] X_20420171_SNP [dm6]	C	A	4.497e^-4	0.962	NON_SYNONYMOUS_CODING Obp19d DOWNSTREAM Pp4-19C	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2681901	3L_2681901_SNP [dm3] 3L_2681901_SNP [dm6]	A	T	4.504e^-4	0.962	INTRON Fife
2L	7671796	2L_7671796_SNP [dm3] 2L_7671796_SNP [dm6]	G	A	4.506e^-4	0.962	INTRON Slob & 1 other
X	11180343	X_11180343_SNP [dm3] X_11286310_SNP [dm6]	T	A	4.508e^-4	0.962	INTRON CG44422
3R	20335590	3R_20335590_SNP [dm3] 3R_24509868_SNP [dm6]	T	C	4.510e^-4	0.962	INTRON nAChRbeta2
X	10776568	X_10776568_SNP [dm3] X_10882535_SNP [dm6]	T	C	4.518e^-4	0.962	SPLICE_SITE_REGION Ork1 INTRON Ork1
2L	2205538	2L_2205538_SNP [dm3] 2L_2205538_SNP [dm6]	C	G	4.523e^-4	0.962	SYNONYMOUS_CODING CG31668 DOWNSTREAM CG33124
X	12675849	X_12675849_SNP [dm3] X_12781816_SNP [dm6]	C	T	4.525e^-4	0.962	INTRON CG32647
X	13445911	X_13445911_SNP [dm3] X_13551878_SNP [dm6]	C	G	4.531e^-4	0.962	DOWNSTREAM CG11816 INTERGENIC
X	16048670	X_16048670_SNP [dm3] X_16154637_SNP [dm6]	A	T	4.534e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	11734898	X_11734898_SNP [dm3] X_11840865_SNP [dm6]	G	A	4.542e^-4	0.962	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	24427026	3R_24427026_SNP [dm3] 3R_28601304_SNP [dm6]	T	C	4.549e^-4	0.962	UPSTREAM snoRNA:Psi28S-3405a & 3 others INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	4505582	2L_4505582_SNP [dm3] 2L_4505582_SNP [dm6]	T	C	4.554e^-4	0.962	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17743004	2R_17743004_SNP [dm3] 2R_21855499_SNP [dm6]	T	C	4.560e^-4	0.962	INTERGENIC
X	11180328	X_11180328_SNP [dm3] X_11286295_SNP [dm6]	T	G	4.567e^-4	0.962	INTRON CG44422
2L	1527244	2L_1527244_SNP [dm3] 2L_1527244_SNP [dm6]	T	A	4.572e^-4	0.962	INTERGENIC
3R	3769138	3R_3769138_INS [dm3] 3R_7943416_INS [dm6]	A	AA	4.574e^-4	0.962	INTRON dsx
3L	9106850	3L_9106850_SNP [dm3] 3L_9113750_SNP [dm6]	A	G	4.575e^-4	0.962	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10990417	3L_10990417_SNP [dm3] 3L_10997317_SNP [dm6]	A	T	4.580e^-4	0.962	INTRON klu	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13442027	X_13442027_SNP [dm3] X_13547994_SNP [dm6]	G	A	4.582e^-4	0.962	INTERGENIC
3R	24815070	3R_24815070_SNP [dm3] 3R_28989348_SNP [dm6]	A	G	4.593e^-4	0.962	INTERGENIC
3L	18938553	3L_18938553_SNP [dm3] 3L_18945453_SNP [dm6]	G	T	4.593e^-4	0.962	INTRON CG32204
2R	11972869	2R_11972869_SNP [dm3] 2R_16085364_SNP [dm6]	A	G	4.598e^-4	0.962	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12534662	3L_12534662_SNP [dm3] 3L_12541562_SNP [dm6]	T	A	4.603e^-4	0.962	UPSTREAM CR43612 INTRON sowah
3R	7010673	3R_7010673_SNP [dm3] 3R_11184951_SNP [dm6]	A	C	4.612e^-4	0.962	INTERGENIC
X	22035372	X_22035372_SNP [dm3] X_22633536_SNP [dm6]	T	C	4.613e^-4	0.962	UPSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA transposable element FlyBase
3R	7944485	3R_7944485_SNP [dm3] 3R_12118763_SNP [dm6]	A	T	4.619e^-4	0.962	INTERGENIC
X	20858613	X_20858613_SNP [dm3] X_20987586_SNP [dm6]	G	A	4.622e^-4	0.962	INTERGENIC
3R	22717909	3R_22717909_DEL [dm3] 3R_26892187_DEL [dm6]	TAG	T	4.626e^-4	0.962	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2L	8978022	2L_8978022_SNP [dm3] 2L_8978022_SNP [dm6]	G	C	4.633e^-4	0.962	UTR_3_PRIME CG13101
2R	3141947	2R_3141947_SNP [dm3] 2R_7254442_SNP [dm6]	C	A	4.634e^-4	0.962	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9367390	2L_9367390_SNP [dm3] 2L_9367390_SNP [dm6]	C	A	4.637e^-4	0.962	UPSTREAM CG34181 INTERGENIC
3R	22087373	3R_22087373_SNP [dm3] 3R_26261651_SNP [dm6]	T	A	4.647e^-4	0.962	UPSTREAM Ald DOWNSTREAM CR44321 INTERGENIC
3L	10487937	3L_10487937_SNP [dm3] 3L_10494837_SNP [dm6]	T	G	4.647e^-4	0.962	INTRON A2bp1
2L	12671685	2L_12671685_SNP [dm3] 2L_12671685_SNP [dm6]	T	A	4.660e^-4	0.962	INTRON pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	3683698	3R_3683698_SNP [dm3] 3R_7857976_SNP [dm6]	T	C	4.661e^-4	0.962	UTR_3_PRIME CG17816 DOWNSTREAM CG17816
X	12676195	X_12676195_SNP [dm3] X_12782162_SNP [dm6]	C	T	4.670e^-4	0.962	INTRON CG32647
2R	2860203	2R_2860203_SNP [dm3] 2R_6972698_SNP [dm6]	G	A	4.671e^-4	0.962	SYNONYMOUS_CODING Cyp6u1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2372110	2L_2372110_SNP [dm3] 2L_2372110_SNP [dm6]	T	A	4.681e^-4	0.962	UPSTREAM CG3597 DOWNSTREAM CG3609 INTERGENIC
2R	17315755	2R_17315755_SNP [dm3] 2R_21428250_SNP [dm6]	A	G	4.691e^-4	0.962	INTRON Sdc
3R	21976155	3R_21976155_SNP [dm3] 3R_26150433_SNP [dm6]	G	A	4.702e^-4	0.962	INTERGENIC
3L	18935423	3L_18935423_INS [dm3] 3L_18942323_INS [dm6]	C	TGTCAT	4.710e^-4	0.962	INTRON CG32204
X	13446666	X_13446666_SNP [dm3] X_13552633_SNP [dm6]	C	T	4.721e^-4	0.962	UTR_3_PRIME CG11816 DOWNSTREAM CG11816
3R	1665639	3R_1665639_SNP [dm3] 3R_5839917_SNP [dm6]	C	G	4.725e^-4	0.962	INTERGENIC
3R	7858272	3R_7858272_SNP [dm3] 3R_12032550_SNP [dm6]	A	G	4.728e^-4	0.962	UPSTREAM CG31358 & 3 others INTERGENIC
2L	16414354	2L_16414354_SNP [dm3] 2L_16414354_SNP [dm6]	C	T	4.729e^-4	0.962	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
3R	21590697	3R_21590697_DEL [dm3] 3R_25764975_DEL [dm6]	AAATAAATCTCA...	A	4.733e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10167560	3L_10167560_SNP [dm3] 3L_10174460_SNP [dm6]	A	T	4.735e^-4	0.962	INTRON dpr10
3R	26116810	3R_26116810_SNP [dm3] 3R_30291088_SNP [dm6]	T	A	4.736e^-4	0.962	INTRON hdc
2R	12837253	2R_12837253_SNP [dm3] 2R_16949748_SNP [dm6]	T	C	4.744e^-4	0.962	SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2216389	2L_2216389_SNP [dm3] 2L_2216389_SNP [dm6]	A	T	4.748e^-4	0.962	UPSTREAM mio & 1 other DOWNSTREAM CG15386 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21976079	3R_21976079_SNP [dm3] 3R_26150357_SNP [dm6]	A	G	4.751e^-4	0.962	INTERGENIC
3L	4174358	3L_4174358_SNP [dm3] 3L_4174358_SNP [dm6]	C	T	4.753e^-4	0.962	DOWNSTREAM Ero1L & 1 other INTRON CG18675	TF binding site mE1_TFBS_sens
2R	11731246	2R_11731246_SNP [dm3] 2R_15843741_SNP [dm6]	G	A	4.760e^-4	0.962	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	20350386	3R_20350386_SNP [dm3] 3R_24524664_SNP [dm6]	T	C	4.761e^-4	0.962	UPSTREAM CG13622 & 1 other INTERGENIC
3R	3683675	3R_3683675_SNP [dm3] 3R_7857953_SNP [dm6]	G	T	4.762e^-4	0.962	UTR_3_PRIME CG17816 DOWNSTREAM CG17816
2L	12907281	2L_12907281_SNP [dm3] 2L_12907281_SNP [dm6]	C	T	4.768e^-4	0.962	INTERGENIC
2L	11783619	2L_11783619_SNP [dm3] 2L_11783619_SNP [dm6]	A	T	4.770e^-4	0.962	INTERGENIC
3L	2778722	3L_2778722_SNP [dm3] 3L_2778722_SNP [dm6]	T	C	4.794e^-4	0.962	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16269917	3L_16269917_SNP [dm3] 3L_16276817_SNP [dm6]	C	T	4.795e^-4	0.962	UPSTREAM CG13065 INTERGENIC
X	16250606	X_16250606_SNP [dm3] X_16356573_SNP [dm6]	A	G	4.797e^-4	0.962	DOWNSTREAM U2af50 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3164473	3R_3164473_SNP [dm3] 3R_7338751_SNP [dm6]	C	T	4.805e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10779468	3L_10779468_SNP [dm3] 3L_10786368_SNP [dm6]	A	G	4.810e^-4	0.962	INTERGENIC
X	12854984	X_12854984_SNP [dm3] X_12960951_SNP [dm6]	G	C	4.814e^-4	0.962	DOWNSTREAM CG32642 INTERGENIC
2L	9544478	2L_9544478_SNP [dm3] 2L_9544478_SNP [dm6]	C	A	4.815e^-4	0.962	NON_SYNONYMOUS_CODING CG13113 DOWNSTREAM Cpr30B	TF binding site mE1_TFBS_cad
2L	2264121	2L_2264121_SNP [dm3] 2L_2264121_SNP [dm6]	C	T	4.825e^-4	0.962	SYNONYMOUS_CODING CG4270 DOWNSTREAM CG34049 & 1 other
2L	7674021	2L_7674021_SNP [dm3] 2L_7674021_SNP [dm6]	C	A	4.826e^-4	0.962	INTRON Slob & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22035238	X_22035238_SNP [dm3] X_22633402_SNP [dm6]	C	A	4.835e^-4	0.962	UPSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_z transposable element FlyBase
2R	18660344	2R_18660344_SNP [dm3] 2R_22772839_SNP [dm6]	G	A	4.844e^-4	0.962	INTRON CG42260
X	10520048	X_10520048_SNP [dm3] X_10626015_SNP [dm6]	G	A	4.849e^-4	0.962	SYNONYMOUS_CODING CG9806	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7897385	2L_7897385_SNP [dm3] 2L_7897385_SNP [dm6]	A	T	4.853e^-4	0.962	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4170708	3L_4170708_SNP [dm3] 3L_4170708_SNP [dm6]	T	C	4.866e^-4	0.962	SYNONYMOUS_CODING Ero1L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16630093	X_16630093_SNP [dm3] X_16736060_SNP [dm6]	A	T	4.870e^-4	0.962	DOWNSTREAM TwdlY INTRON CG9634
3L	3945386	3L_3945386_SNP [dm3] 3L_3945386_SNP [dm6]	G	A	4.874e^-4	0.962	SYNONYMOUS_CODING CG14982	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
X	5361559	X_5361559_SNP [dm3] X_5467526_SNP [dm6]	A	C	4.874e^-4	0.962	INTRON SPR
2L	13813526	2L_13813526_SNP [dm3] 2L_13813526_SNP [dm6]	C	T	4.875e^-4	0.962	UPSTREAM Sos & 1 other DOWNSTREAM CG16865 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11058581	3L_11058581_SNP [dm3] 3L_11065481_SNP [dm6]	G	A	4.877e^-4	0.962	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101 UPSTREAM CG32075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11760039	3L_11760039_SNP [dm3] 3L_11766939_SNP [dm6]	T	C	4.888e^-4	0.962	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC
3R	8031031	3R_8031031_SNP [dm3] 3R_12205309_SNP [dm6]	T	A	4.888e^-4	0.962	INTERGENIC
2R	16319043	2R_16319043_SNP [dm3] 2R_20431538_SNP [dm6]	C	T	4.895e^-4	0.962	INTRON CG12484
3L	15077587	3L_15077587_SNP [dm3] 3L_15084487_SNP [dm6]	C	T	4.899e^-4	0.962	SYNONYMOUS_CODING cp309 UTR_5_PRIME cp309	TF binding site mE1_TFBS_cad
X	17708382	X_17708382_SNP [dm3] X_17814349_SNP [dm6]	C	A	4.900e^-4	0.962	DOWNSTREAM OdsH INTERGENIC
3L	16267112	3L_16267112_SNP [dm3] 3L_16274012_SNP [dm6]	T	C	4.907e^-4	0.962	DOWNSTREAM CG13066 INTERGENIC
2L	5386498	2L_5386498_SNP [dm3] 2L_5386498_SNP [dm6]	G	C	4.911e^-4	0.962	INTERGENIC
2R	6813668	2R_6813668_SNP [dm3] 2R_10926163_SNP [dm6]	C	G	4.914e^-4	0.962	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12053480	2R_12053480_SNP [dm3] 2R_16165975_SNP [dm6]	G	T	4.916e^-4	0.962	INTRON lbk
2L	13355520	2L_13355520_SNP [dm3] 2L_13355520_SNP [dm6]	G	T	4.919e^-4	0.962	UPSTREAM CG9395 INTERGENIC
3R	5697349	3R_5697349_SNP [dm3] 3R_9871627_SNP [dm6]	G	A	4.921e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	15436321	3L_15436321_SNP [dm3] 3L_15443221_SNP [dm6]	T	C	4.921e^-4	0.962	INTERGENIC
2L	7333347	2L_7333347_SNP [dm3] 2L_7333347_SNP [dm6]	T	A	4.925e^-4	0.962	UPSTREAM Wnt6 INTERGENIC
2L	5384410	2L_5384410_SNP [dm3] 2L_5384410_SNP [dm6]	A	T	4.929e^-4	0.962	INTERGENIC
2R	11693663	2R_11693663_SNP [dm3] 2R_15806158_SNP [dm6]	T	A	4.933e^-4	0.962	INTRON tun & 1 other
3L	16270127	3L_16270127_SNP [dm3] 3L_16277027_SNP [dm6]	A	C	4.948e^-4	0.962	UPSTREAM CG13065 INTERGENIC
2L	12855271	2L_12855271_MNP [dm3] 2L_12855271_MNP [dm6]	TAGATA	GCTTAT	4.952e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26151961	3R_26151961_SNP [dm3] 3R_30326239_SNP [dm6]	C	T	4.954e^-4	0.962	INTRON hdc	TF binding site mE1_TFBS_chinmo
X	4965032	X_4965032_SNP [dm3] X_5070999_SNP [dm6]	T	G	4.955e^-4	0.962	DOWNSTREAM CG32767 & 1 other INTERGENIC
3L	2278041	3L_2278041_SNP [dm3] 3L_2278041_SNP [dm6]	G	T	4.960e^-4	0.962	DOWNSTREAM yellow-g2 INTERGENIC
2L	1545264	2L_1545264_SNP [dm3] 2L_1545264_SNP [dm6]	T	C	4.961e^-4	0.962	INTERGENIC
3R	8775071	3R_8775071_SNP [dm3] 3R_12949349_SNP [dm6]	A	G	4.965e^-4	0.962	DOWNSTREAM grsm INTERGENIC
2L	14898284	2L_14898284_SNP [dm3] 2L_14898284_SNP [dm6]	C	T	4.977e^-4	0.962	INTERGENIC
3L	15936504	3L_15936504_SNP [dm3] 3L_15943404_SNP [dm6]	G	A	4.980e^-4	0.962	INTRON Pka-C3
3R	25477358	3R_25477358_SNP [dm3] 3R_29651636_SNP [dm6]	G	T	4.992e^-4	0.962	INTRON Dop1R2
3L	9198741	3L_9198741_SNP [dm3] 3L_9205641_SNP [dm6]	T	C	4.993e^-4	0.962	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	2274679	3R_2274679_SNP [dm3] 3R_6448957_SNP [dm6]	A	C	5.008e^-4	0.962	UTR_3_PRIME gpp DOWNSTREAM gpp & 1 other
2R	10672102	2R_10672102_SNP [dm3] 2R_14784597_SNP [dm6]	C	A	5.011e^-4	0.962	INTRON kn	TF binding site mE1_TFBS_inv
3R	9724574	3R_9724574_SNP [dm3] 3R_13898852_SNP [dm6]	C	A	5.014e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1856372	2L_1856372_SNP [dm3] 2L_1856372_SNP [dm6]	T	A	5.015e^-4	0.962	INTRON wry
3R	10636304	3R_10636304_DEL [dm3] 3R_14810582_DEL [dm6]	ATATTAGAAACCATTGC...	A	5.023e^-4	0.962	INTRON btsz
2R	16247903	2R_16247903_SNP [dm3] 2R_20360398_SNP [dm6]	A	G	5.023e^-4	0.962	INTERGENIC
3R	3679016	3R_3679016_SNP [dm3] 3R_7853294_SNP [dm6]	G	C	5.027e^-4	0.962	UTR_3_PRIME CG34384
3L	10171843	3L_10171843_SNP [dm3] 3L_10178743_SNP [dm6]	G	T	5.039e^-4	0.962	INTRON dpr10
2L	2908332	2L_2908332_SNP [dm3] 2L_2908332_SNP [dm6]	G	A	5.040e^-4	0.962	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	2780919	3L_2780919_SNP [dm3] 3L_2780919_SNP [dm6]	T	C	5.058e^-4	0.962	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2R	8490991	2R_8490991_SNP [dm3] 2R_12603486_SNP [dm6]	A	G	5.058e^-4	0.962	INTRON Amph
3R	14697756	3R_14697756_INS [dm3] 3R_18872034_INS [dm6]	A	ATT	5.064e^-4	0.962	INTERGENIC
2R	15552438	2R_15552438_SNP [dm3] 2R_19664933_SNP [dm6]	C	T	5.067e^-4	0.962	DOWNSTREAM hrg INTRON hrg
3L	6724192	3L_6724192_SNP [dm3] 3L_6731092_SNP [dm6]	C	T	5.068e^-4	0.962	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4338455	X_4338455_SNP [dm3] X_4444422_SNP [dm6]	G	A	5.096e^-4	0.962	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	21710104	2L_21710104_SNP [dm3] 2L_21710104_SNP [dm6]	G	A	5.099e^-4	0.962	INTRON CG31619	transposable element FlyBase
X	22136264	X_22136264_SNP [dm3] X_22734428_SNP [dm6]	T	G	5.106e^-4	0.962	INTRON CR44997
X	10517853	X_10517853_SNP [dm3] X_10623820_SNP [dm6]	G	T	5.132e^-4	0.962	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2L	8591631	2L_8591631_SNP [dm3] 2L_8591631_SNP [dm6]	T	A	5.133e^-4	0.962	UPSTREAM CR43855 INTRON Sema-1a & 1 other
3L	12534647	3L_12534647_SNP [dm3] 3L_12541547_SNP [dm6]	G	A	5.144e^-4	0.962	UPSTREAM CR43612 INTRON sowah
3R	10924790	3R_10924790_SNP [dm3] 3R_15099068_SNP [dm6]	T	A	5.147e^-4	0.962	SYNONYMOUS_CODING CG42788	TF binding site BDTNP1_TFBS_sna
2L	14003126	2L_14003126_SNP [dm3] 2L_14003126_SNP [dm6]	C	T	5.150e^-4	0.962	INTERGENIC
2R	5282796	2R_5282796_SNP [dm3] 2R_9395291_SNP [dm6]	C	G	5.159e^-4	0.962	DOWNSTREAM CG8800 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	15602732	2L_15602732_SNP [dm3] 2L_15602732_SNP [dm6]	G	T	5.160e^-4	0.962	INTERGENIC
2L	3342752	2L_3342752_SNP [dm3] 2L_3342752_SNP [dm6]	T	G	5.163e^-4	0.962	INTRON E23	TF binding site mE1_TFBS_cad
3R	23208145	3R_23208145_SNP [dm3] 3R_27382423_SNP [dm6]	G	A	5.165e^-4	0.962	SYNONYMOUS_CODING side	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9541533	2L_9541533_SNP [dm3] 2L_9541533_SNP [dm6]	T	C	5.170e^-4	0.962	SYNONYMOUS_CODING CG17855
3R	8031059	3R_8031059_SNP [dm3] 3R_12205337_SNP [dm6]	G	A	5.172e^-4	0.962	INTERGENIC
3L	1105994	3L_1105994_SNP [dm3] 3L_1105994_SNP [dm6]	C	T	5.191e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	6698527	2R_6698527_SNP [dm3] 2R_10811022_SNP [dm6]	G	C	5.194e^-4	0.962	UPSTREAM mms4 & 1 other DOWNSTREAM CG12935 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	3248286	3L_3248286_SNP [dm3] 3L_3248286_SNP [dm6]	C	G	5.195e^-4	0.962	INTRON CG43389
3R	16355117	3R_16355117_SNP [dm3] 3R_20529395_SNP [dm6]	A	T	5.197e^-4	0.962	INTERGENIC
2R	15552434	2R_15552434_SNP [dm3] 2R_19664929_SNP [dm6]	G	A	5.201e^-4	0.962	DOWNSTREAM hrg INTRON hrg
3R	8035146	3R_8035146_SNP [dm3] 3R_12209424_SNP [dm6]	G	A	5.204e^-4	0.962	SYNONYMOUS_CODING CG4830
2R	18156797	2R_18156797_SNP [dm3] 2R_22269292_SNP [dm6]	C	G	5.206e^-4	0.962	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	3796820	2L_3796820_SNP [dm3] 2L_3796820_SNP [dm6]	G	A	5.208e^-4	0.962	SYNONYMOUS_CODING CG3921
3L	12833388	3L_12833388_SNP [dm3] 3L_12840288_SNP [dm6]	C	T	5.213e^-4	0.962	INTRON CG10960
3L	11382574	3L_11382574_SNP [dm3] 3L_11389474_SNP [dm6]	A	C	5.221e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16410589	3R_16410589_SNP [dm3] 3R_20584867_SNP [dm6]	T	A	5.227e^-4	0.962	INTRON CG16953
2R	10831515	2R_10831515_SNP [dm3] 2R_14944010_SNP [dm6]	A	G	5.232e^-4	0.962	SYNONYMOUS_CODING CG10257 DOWNSTREAM aPKC	TF binding site mE1_TFBS_HSA
2L	11307693	2L_11307693_SNP [dm3] 2L_11307693_SNP [dm6]	A	G	5.235e^-4	0.962	UPSTREAM CR43721 INTERGENIC
X	12805199	X_12805199_SNP [dm3] X_12911166_SNP [dm6]	A	C	5.250e^-4	0.962	INTRON CG4645
2R	11214990	2R_11214990_SNP [dm3] 2R_15327485_SNP [dm6]	C	T	5.256e^-4	0.962	UTR_3_PRIME CG8160

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.753e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1787 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	4398116	3L_4398116_SNP [dm3] 3L_4398116_SNP [dm6]	T	C	1.016e^-6	0.773	INTRON slow
X	2782576	X_2782576_SNP [dm3] X_2888543_SNP [dm6]	A	G	1.244e^-6	0.773	INTRON kirre
3R	5778814	3R_5778814_INS [dm3] 3R_9953092_INS [dm6]	A	ACAGCAAGAATGGCGCCCAA...	2.271e^-6	0.773	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2739802	3L_2739802_SNP [dm3] 3L_2739802_SNP [dm6]	T	C	3.174e^-6	0.773	SYNONYMOUS_CODING Acp62F INTRON Mrtf
X	4492315	X_4492315_SNP [dm3] X_4598282_SNP [dm6]	T	C	3.986e^-6	0.773	INTRON CR32773
3L	12675313	3L_12675313_SNP [dm3] 3L_12682213_SNP [dm6]	C	T	4.520e^-6	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17277012	2R_17277012_SNP [dm3] 2R_21389507_SNP [dm6]	T	C	5.209e^-6	0.773	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2R	6998395	2R_6998395_SNP [dm3] 2R_11110890_SNP [dm6]	T	A	5.632e^-6	0.773	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	831866	2L_831866_SNP [dm3] 2L_831866_SNP [dm6]	T	C	6.120e^-6	0.773	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18364079	2L_18364079_SNP [dm3] 2L_18364079_SNP [dm6]	G	C	6.172e^-6	0.773	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9360305	2R_9360305_SNP [dm3] 2R_13472800_SNP [dm6]	G	A	6.445e^-6	0.773	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4492194	X_4492194_SNP [dm3] X_4598161_SNP [dm6]	T	A	7.686e^-6	0.773	INTRON CR32773
2R	6997878	2R_6997878_SNP [dm3] 2R_11110373_SNP [dm6]	A	G	7.727e^-6	0.773	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4492312	X_4492312_SNP [dm3] X_4598279_SNP [dm6]	C	T	8.374e^-6	0.773	INTRON CR32773
2L	4525190	2L_4525190_SNP [dm3] 2L_4525190_SNP [dm6]	T	C	8.458e^-6	0.773	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4492189	X_4492189_SNP [dm3] X_4598156_SNP [dm6]	A	T	9.159e^-6	0.773	INTRON CR32773
3L	4398146	3L_4398146_SNP [dm3] 3L_4398146_SNP [dm6]	A	C	9.186e^-6	0.773	INTRON slow
3L	9005629	3L_9005629_SNP [dm3] 3L_9012529_SNP [dm6]	C	A	9.603e^-6	0.773	DOWNSTREAM Doc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	4492314	X_4492314_SNP [dm3] X_4598281_SNP [dm6]	A	G	9.774e^-6	0.773	INTRON CR32773
X	4492186	X_4492186_SNP [dm3] X_4598153_SNP [dm6]	A	T	1.003e^-5	0.773	INTRON CR32773
X	4492339	X_4492339_SNP [dm3] X_4598306_SNP [dm6]	T	C	1.048e^-5	0.773	INTRON CR32773
X	4492318	X_4492318_SNP [dm3] X_4598285_SNP [dm6]	G	T	1.062e^-5	0.773	INTRON CR32773
2R	10670161	2R_10670161_SNP [dm3] 2R_14782656_SNP [dm6]	C	T	1.066e^-5	0.773	INTRON kn
2L	3348314	2L_3348314_SNP [dm3] 2L_3348314_SNP [dm6]	A	T	1.085e^-5	0.773	INTRON E23
X	4492381	X_4492381_SNP [dm3] X_4598348_SNP [dm6]	A	T	1.142e^-5	0.773	INTRON CR32773
3L	13277802	3L_13277802_SNP [dm3] 3L_13284702_SNP [dm6]	A	G	1.145e^-5	0.773	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
2L	4525340	2L_4525340_SNP [dm3] 2L_4525340_SNP [dm6]	A	G	1.365e^-5	0.773	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4492380	X_4492380_SNP [dm3] X_4598347_SNP [dm6]	T	A	1.387e^-5	0.773	INTRON CR32773
X	4492357	X_4492357_SNP [dm3] X_4598324_SNP [dm6]	G	T	1.390e^-5	0.773	INTRON CR32773
2L	4525160	2L_4525160_SNP [dm3] 2L_4525160_SNP [dm6]	C	G	1.424e^-5	0.773	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9485228	3L_9485228_INS [dm3] 3L_9492128_INS [dm6]	T	TGT	1.461e^-5	0.773	UTR_5_PRIME CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18364425	2L_18364425_SNP [dm3] 2L_18364425_SNP [dm6]	T	C	1.494e^-5	0.773	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4492364	X_4492364_SNP [dm3] X_4598331_SNP [dm6]	T	A	1.501e^-5	0.773	INTRON CR32773
2R	16374062	2R_16374062_INS [dm3] 2R_20486557_INS [dm6]	C	CC	1.503e^-5	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4492088	X_4492088_SNP [dm3] X_4598055_SNP [dm6]	C	T	1.552e^-5	0.773	INTRON CR32773
3L	9304975	3L_9304975_INS [dm3] 3L_9311875_INS [dm6]	C	CAAC	1.622e^-5	0.773	INTERGENIC
3L	14192415	3L_14192415_SNP [dm3] 3L_14199315_SNP [dm6]	C	G	1.652e^-5	0.773	INTRON nuf
X	3675169	X_3675169_DEL [dm3] X_3781136_DEL [dm6]	GAG	G	1.725e^-5	0.773	INTRON tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13689804	3L_13689804_SNP [dm3] 3L_13696704_SNP [dm6]	T	A	1.785e^-5	0.773	INTRON bru-3
3L	2740368	3L_2740368_DEL [dm3] 3L_2740368_DEL [dm6]	TC	T	1.903e^-5	0.773	DOWNSTREAM Acp62F INTRON Mrtf
2R	12628993	2R_12628993_SNP [dm3] 2R_16741488_SNP [dm6]	A	G	1.944e^-5	0.773	INTERGENIC
3L	2733827	3L_2733827_SNP [dm3] 3L_2733827_SNP [dm6]	C	T	1.998e^-5	0.773	INTRON Mrtf
X	12455701	X_12455701_SNP [dm3] X_12561668_SNP [dm6]	C	T	2.008e^-5	0.773	INTRON CG43921
3L	3773370	3L_3773370_SNP [dm3] 3L_3773370_SNP [dm6]	A	T	2.291e^-5	0.773	INTRON CG32264
X	4492219	X_4492219_SNP [dm3] X_4598186_SNP [dm6]	T	A	2.295e^-5	0.773	INTRON CR32773
3L	1934703	3L_1934703_SNP [dm3] 3L_1934703_SNP [dm6]	G	A	2.370e^-5	0.773	SYNONYMOUS_CODING CG5687
3L	11118505	3L_11118505_INS [dm3] 3L_11125405_INS [dm6]	T	TGTACATAT	2.448e^-5	0.773	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	11118424	3L_11118424_SNP [dm3] 3L_11125324_SNP [dm6]	A	T	2.534e^-5	0.773	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	14881742	2R_14881742_MNP [dm3] 2R_18994237_MNP [dm6]	ATT	GCA	2.538e^-5	0.773	UPSTREAM snoRNA:abba-a INTRON tn
2L	3350330	2L_3350330_DEL [dm3] 2L_3350330_DEL [dm6]	AACCAA	A	2.569e^-5	0.773	INTRON E23
X	10283526	X_10283526_SNP [dm3] X_10389493_SNP [dm6]	G	A	2.578e^-5	0.773	INTRON flw
2R	12628995	2R_12628995_SNP [dm3] 2R_16741490_SNP [dm6]	G	A	2.592e^-5	0.773	INTERGENIC
3R	11337076	3R_11337076_SNP [dm3] 3R_15511354_SNP [dm6]	T	C	2.604e^-5	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19604361	3R_19604361_SNP [dm3] 3R_23778639_SNP [dm6]	T	C	2.619e^-5	0.773	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_sens
2R	14939890	2R_14939890_SNP [dm3] 2R_19052385_SNP [dm6]	A	G	2.663e^-5	0.773	INTERGENIC
2R	17458804	2R_17458804_SNP [dm3] 2R_21571299_SNP [dm6]	T	G	2.718e^-5	0.773	UTR_5_PRIME CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6116678	3R_6116678_SNP [dm3] 3R_10290956_SNP [dm6]	C	T	2.742e^-5	0.773	INTRON CG43143
2R	18075334	2R_18075334_SNP [dm3] 2R_22187829_SNP [dm6]	T	G	2.788e^-5	0.773	INTRON Vps35	TF binding site mE1_TFBS_sens
X	10283462	X_10283462_SNP [dm3] X_10389429_SNP [dm6]	C	A	2.809e^-5	0.773	INTRON flw
2R	4114865	2R_4114865_SNP [dm3] 2R_8227360_SNP [dm6]	C	T	2.889e^-5	0.773	DOWNSTREAM LRP1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
4	135630	4_135630_SNP [dm3] 4_115004_SNP [dm6]	A	G	2.913e^-5	0.773	DOWNSTREAM Ank & 1 other INTERGENIC	transposable element FlyBase
2R	18075349	2R_18075349_SNP [dm3] 2R_22187844_SNP [dm6]	C	T	2.914e^-5	0.773	SPLICE_SITE_REGION Vps35 INTRON Vps35	TF binding site mE1_TFBS_sens
3L	2733820	3L_2733820_SNP [dm3] 3L_2733820_SNP [dm6]	T	C	2.959e^-5	0.773	INTRON Mrtf
X	18495722	X_18495722_SNP [dm3] X_18601689_SNP [dm6]	A	G	2.973e^-5	0.773	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4135269	2L_4135269_SNP [dm3] 2L_4135269_SNP [dm6]	A	G	3.017e^-5	0.773	INTERGENIC
3L	11118422	3L_11118422_SNP [dm3] 3L_11125322_SNP [dm6]	A	T	3.115e^-5	0.773	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	2118216	3L_2118216_SNP [dm3] 3L_2118216_SNP [dm6]	T	A	3.132e^-5	0.773	INTRON zormin
X	4492261	X_4492261_DEL [dm3] X_4598228_DEL [dm6]	TCGCAATAATGAAAGTGTAT...	T	3.240e^-5	0.773	INTRON CR32773
2L	3226360	2L_3226360_SNP [dm3] 2L_3226360_SNP [dm6]	G	A	3.242e^-5	0.773	INTERGENIC
3L	11118430	3L_11118430_INS [dm3] 3L_11125330_INS [dm6]	A	TT	3.301e^-5	0.773	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	17444084	2R_17444084_SNP [dm3] 2R_21556579_SNP [dm6]	A	C	3.340e^-5	0.773	INTRON Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11118485	3L_11118485_SNP [dm3] 3L_11125385_SNP [dm6]	G	A	3.356e^-5	0.773	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	4003445	3L_4003445_SNP [dm3] 3L_4003445_SNP [dm6]	G	A	3.359e^-5	0.773	UPSTREAM CG14985 INTERGENIC
2L	9541152	2L_9541152_SNP [dm3] 2L_9541152_SNP [dm6]	C	T	3.445e^-5	0.773	SYNONYMOUS_CODING CG17855
2L	20996822	2L_20996822_SNP [dm3] 2L_20996822_SNP [dm6]	T	A	3.460e^-5	0.773	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11117254	3L_11117254_SNP [dm3] 3L_11124154_SNP [dm6]	C	G	3.505e^-5	0.773	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9541221	2L_9541221_SNP [dm3] 2L_9541221_SNP [dm6]	G	A	3.523e^-5	0.773	SYNONYMOUS_CODING CG17855
X	4492198	X_4492198_SNP [dm3] X_4598165_SNP [dm6]	T	A	3.588e^-5	0.773	INTRON CR32773
3L	6176525	3L_6176525_SNP [dm3] 3L_6183425_SNP [dm6]	G	A	3.619e^-5	0.773	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13277773	3L_13277773_SNP [dm3] 3L_13284673_SNP [dm6]	T	G	3.763e^-5	0.773	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
2R	18921903	2R_18921903_SNP [dm3] 2R_23034380_SNP [dm6]	G	A	3.768e^-5	0.773	INTRON twi & 1 other	TF binding site mE1_TFBS_cad
X	8152384	X_8152384_SNP [dm3] X_8258351_SNP [dm6]	A	G	3.797e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19546525	2R_19546525_SNP [dm3] 2R_23659002_SNP [dm6]	A	G	3.844e^-5	0.773	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14881764	2R_14881764_SNP [dm3] 2R_18994259_SNP [dm6]	A	G	3.858e^-5	0.773	UPSTREAM snoRNA:abba-a INTRON tn
3R	10847718	3R_10847718_SNP [dm3] 3R_15021996_SNP [dm6]	T	A	3.895e^-5	0.773	INTERGENIC
2R	19128037	2R_19128037_INS [dm3] 2R_23240514_INS [dm6]	A	AA	3.955e^-5	0.773	INTERGENIC
3L	11118486	3L_11118486_SNP [dm3] 3L_11125386_SNP [dm6]	T	G	4.047e^-5	0.773	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	8152347	X_8152347_SNP [dm3] X_8258314_SNP [dm6]	A	G	4.124e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
3L	3537555	3L_3537555_SNP [dm3] 3L_3537555_SNP [dm6]	A	G	4.152e^-5	0.773	INTRON Eip63E
3L	13392650	3L_13392650_INS [dm3] 3L_13399550_INS [dm6]	C	CTGC	4.183e^-5	0.773	CODON_INSERTION sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12323908	3L_12323908_SNP [dm3] 3L_12330808_SNP [dm6]	G	T	4.199e^-5	0.773	INTRON CG32105
X	4492151	X_4492151_SNP [dm3] X_4598118_SNP [dm6]	A	T	4.221e^-5	0.773	INTRON CR32773
2L	9541149	2L_9541149_SNP [dm3] 2L_9541149_SNP [dm6]	G	T	4.246e^-5	0.773	SYNONYMOUS_CODING CG17855
2R	14170295	2R_14170295_SNP [dm3] 2R_18282790_SNP [dm6]	C	T	4.250e^-5	0.773	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4148596	2R_4148596_SNP [dm3] 2R_8261091_SNP [dm6]	T	C	4.282e^-5	0.773	NON_SYNONYMOUS_CODING CG2291 DOWNSTREAM CG14759
3R	20273841	3R_20273841_SNP [dm3] 3R_24448119_SNP [dm6]	A	C	4.317e^-5	0.773	INTRON nAChRalpha1
2L	22111220	2L_22111220_SNP [dm3] 2L_22111220_SNP [dm6]	C	G	4.332e^-5	0.773	DOWNSTREAM CG6675 INTERGENIC	transposable element FlyBase
3L	2706550	3L_2706550_SNP [dm3] 3L_2706550_SNP [dm6]	G	T	4.382e^-5	0.773	INTRON Fife
X	8152406	X_8152406_SNP [dm3] X_8258373_SNP [dm6]	T	C	4.394e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152395	X_8152395_SNP [dm3] X_8258362_SNP [dm6]	A	T	4.445e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2118195	3L_2118195_SNP [dm3] 3L_2118195_SNP [dm6]	C	G	4.455e^-5	0.773	INTRON zormin
3L	2118240	3L_2118240_SNP [dm3] 3L_2118240_SNP [dm6]	G	T	4.455e^-5	0.773	INTRON zormin
3L	2118246	3L_2118246_SNP [dm3] 3L_2118246_SNP [dm6]	A	G	4.455e^-5	0.773	INTRON zormin
2L	3566019	2L_3566019_SNP [dm3] 2L_3566019_SNP [dm6]	C	T	4.456e^-5	0.773	INTERGENIC
3L	2118218	3L_2118218_SNP [dm3] 3L_2118218_SNP [dm6]	G	A	4.481e^-5	0.773	INTRON zormin
X	8152323	X_8152323_SNP [dm3] X_8258290_SNP [dm6]	T	C	4.512e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
3L	5947471	3L_5947471_SNP [dm3] 3L_5954371_SNP [dm6]	C	T	4.551e^-5	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5662593	X_5662593_DEL [dm3] X_5768560_DEL [dm6]	AGATATACTTATCA...	A	4.566e^-5	0.773	INTRON CG42699 & 1 other
X	8152410	X_8152410_SNP [dm3] X_8258377_SNP [dm6]	A	G	4.620e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8152415	X_8152415_SNP [dm3] X_8258382_SNP [dm6]	C	A	4.620e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11337060	3R_11337060_SNP [dm3] 3R_15511338_SNP [dm6]	C	T	4.646e^-5	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8152379	X_8152379_SNP [dm3] X_8258346_SNP [dm6]	T	G	4.679e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4492353	X_4492353_INS [dm3] X_4598320_INS [dm6]	C	CTATTC	4.734e^-5	0.773	INTRON CR32773
X	8152419	X_8152419_SNP [dm3] X_8258386_SNP [dm6]	A	G	4.776e^-5	0.773	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	831560	2L_831560_SNP [dm3] 2L_831560_SNP [dm6]	G	A	4.835e^-5	0.773	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9323318	3L_9323318_SNP [dm3] 3L_9330218_SNP [dm6]	T	C	4.852e^-5	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18364413	2L_18364413_SNP [dm3] 2L_18364413_SNP [dm6]	C	T	4.855e^-5	0.773	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24232514	3R_24232514_SNP [dm3] 3R_28406792_SNP [dm6]	A	G	4.865e^-5	0.773	INTERGENIC
X	18495821	X_18495821_SNP [dm3] X_18601788_SNP [dm6]	T	C	4.969e^-5	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15441536	2L_15441536_SNP [dm3] 2L_15441536_SNP [dm6]	A	G	5.030e^-5	0.78	UPSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21777358	3R_21777358_SNP [dm3] 3R_25951636_SNP [dm6]	C	T	5.171e^-5	0.78	INTRON CCAP-R	TF binding site mE1_TFBS_inv
3L	11118421	3L_11118421_SNP [dm3] 3L_11125321_SNP [dm6]	C	T	5.255e^-5	0.78	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	4003297	3L_4003297_INS [dm3] 3L_4003297_INS [dm6]	T	TAT	5.287e^-5	0.78	UPSTREAM CG14985 INTERGENIC
2L	9543715	2L_9543715_SNP [dm3] 2L_9543715_SNP [dm6]	T	C	5.392e^-5	0.78	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3L	1935129	3L_1935129_SNP [dm3] 3L_1935129_SNP [dm6]	G	A	5.394e^-5	0.78	SYNONYMOUS_CODING CG5687
3L	2118219	3L_2118219_SNP [dm3] 3L_2118219_SNP [dm6]	T	A	5.402e^-5	0.78	INTRON zormin
2L	3566056	2L_3566056_SNP [dm3] 2L_3566056_SNP [dm6]	G	A	5.422e^-5	0.78	INTERGENIC
X	8152336	X_8152336_DEL [dm3] X_8258303_DEL [dm6]	GCTACTCCA	G	5.443e^-5	0.78	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
X	8152368	X_8152368_DEL [dm3] X_8258335_DEL [dm6]	TATACACA	T	5.443e^-5	0.78	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
3L	15077587	3L_15077587_SNP [dm3] 3L_15084487_SNP [dm6]	C	T	5.502e^-5	0.78	SYNONYMOUS_CODING cp309 UTR_5_PRIME cp309	TF binding site mE1_TFBS_cad
2R	9378148	2R_9378148_SNP [dm3] 2R_13490643_SNP [dm6]	C	T	5.504e^-5	0.78	INTRON bbc
2L	3348202	2L_3348202_SNP [dm3] 2L_3348202_SNP [dm6]	A	T	5.566e^-5	0.78	INTRON E23
2R	17482970	2R_17482970_SNP [dm3] 2R_21595465_SNP [dm6]	A	G	5.605e^-5	0.78	INTERGENIC
3L	2796759	3L_2796759_SNP [dm3] 3L_2796759_SNP [dm6]	C	G	5.613e^-5	0.78	INTRON CG43444	TF binding site mE1_TFBS_inv
2R	14881799	2R_14881799_SNP [dm3] 2R_18994294_SNP [dm6]	C	T	5.666e^-5	0.78	UPSTREAM snoRNA:abba-a INTRON tn
2L	2877508	2L_2877508_SNP [dm3] 2L_2877508_SNP [dm6]	A	T	5.680e^-5	0.78	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
X	8152387	X_8152387_SNP [dm3] X_8258354_SNP [dm6]	T	C	5.741e^-5	0.78	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14881689	2R_14881689_SNP [dm3] 2R_18994184_SNP [dm6]	G	T	5.743e^-5	0.78	UPSTREAM snoRNA:abba-a INTRON tn
2R	14881760	2R_14881760_SNP [dm3] 2R_18994255_SNP [dm6]	C	T	5.798e^-5	0.78	UPSTREAM snoRNA:abba-a INTRON tn
3L	11118455	3L_11118455_SNP [dm3] 3L_11125355_SNP [dm6]	C	T	5.848e^-5	0.78	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	5.863e^-5	0.78	INTERGENIC
2L	831536	2L_831536_SNP [dm3] 2L_831536_SNP [dm6]	T	C	5.947e^-5	0.783	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5508556	2L_5508556_SNP [dm3] 2L_5508556_SNP [dm6]	G	C	5.997e^-5	0.783	INTERGENIC
X	2483041	X_2483041_SNP [dm3] X_2589008_SNP [dm6]	T	G	6.068e^-5	0.783	UTR_5_PRIME egh DOWNSTREAM wds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	4003625	3L_4003625_SNP [dm3] 3L_4003625_SNP [dm6]	G	A	6.086e^-5	0.783	SYNONYMOUS_CODING CG14985	TF binding site mE1_TFBS_HSA
3R	11318017	3R_11318017_SNP [dm3] 3R_15492295_SNP [dm6]	G	C	6.130e^-5	0.783	NON_SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3566104	2L_3566104_SNP [dm3] 2L_3566104_SNP [dm6]	C	T	6.149e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2797131	3L_2797131_SNP [dm3] 3L_2797131_SNP [dm6]	T	G	6.175e^-5	0.783	INTRON CG43444
3L	13374242	3L_13374242_SNP [dm3] 3L_13381142_SNP [dm6]	C	T	6.483e^-5	0.812	SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10558770	3L_10558770_SNP [dm3] 3L_10565670_SNP [dm6]	C	T	6.492e^-5	0.812	INTRON A2bp1
3R	24232897	3R_24232897_SNP [dm3] 3R_28407175_SNP [dm6]	C	T	6.655e^-5	0.827	INTERGENIC
2R	18909483	2R_18909483_SNP [dm3] 2R_23021960_SNP [dm6]	G	C	6.776e^-5	0.834	INTRON twi & 1 other
3L	9304979	3L_9304979_SNP [dm3] 3L_9311879_SNP [dm6]	T	G	6.803e^-5	0.834	INTERGENIC
2L	20966465	2L_20966465_DEL [dm3] 2L_20966465_DEL [dm6]	AA	A	7.034e^-5	0.836	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
3R	5904805	3R_5904805_INS [dm3] 3R_10079083_INS [dm6]	A	AAGGAA	7.034e^-5	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2562379	3L_2562379_SNP [dm3] 3L_2562379_SNP [dm6]	A	G	7.085e^-5	0.836	SYNONYMOUS_CODING msn INTRON msn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4492220	X_4492220_SNP [dm3] X_4598187_SNP [dm6]	C	G	7.086e^-5	0.836	INTRON CR32773
3R	19604421	3R_19604421_SNP [dm3] 3R_23778699_SNP [dm6]	T	C	7.115e^-5	0.836	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9542101	2L_9542101_SNP [dm3] 2L_9542101_SNP [dm6]	G	T	7.215e^-5	0.836	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
2R	19105768	2R_19105768_SNP [dm3] 2R_23218245_SNP [dm6]	G	T	7.224e^-5	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	16840320	3R_16840320_SNP [dm3] 3R_21014598_SNP [dm6]	G	A	7.241e^-5	0.836	UTR_3_PRIME Calx DOWNSTREAM Calx
2R	17276869	2R_17276869_DEL [dm3] 2R_21389364_DEL [dm6]	CC	C	7.250e^-5	0.836	UPSTREAM Acox57D-d DOWNSTREAM Acox57D-p INTERGENIC
2R	17083802	2R_17083802_SNP [dm3] 2R_21196297_SNP [dm6]	C	T	7.347e^-5	0.836	INTRON Lapsyn
2L	9413563	2L_9413563_SNP [dm3] 2L_9413563_SNP [dm6]	C	T	7.389e^-5	0.836	INTRON Shawl
X	20475078	X_20475078_SNP [dm3] X_20604051_SNP [dm6]	C	A	7.455e^-5	0.836	INTRON RunxA	TF binding site mE1_TFBS_chinmo
3L	9774982	3L_9774982_SNP [dm3] 3L_9781882_SNP [dm6]	C	T	7.539e^-5	0.836	SYNONYMOUS_CODING CG8177 DOWNSTREAM CG8177 INTRON CG8177
X	17962458	X_17962458_SNP [dm3] X_18068425_SNP [dm6]	T	A	7.554e^-5	0.836	SYNONYMOUS_CODING Dhc16F
X	18386849	X_18386849_SNP [dm3] X_18492816_SNP [dm6]	G	A	7.555e^-5	0.836	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
3L	9304971	3L_9304971_INS [dm3] 3L_9311871_INS [dm6]	C	CAAA	7.556e^-5	0.836	INTERGENIC
3L	11118534	3L_11118534_SNP [dm3] 3L_11125434_SNP [dm6]	C	T	7.606e^-5	0.836	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	3348267	2L_3348267_SNP [dm3] 2L_3348267_SNP [dm6]	T	G	7.654e^-5	0.836	INTRON E23
2L	9541151	2L_9541151_SNP [dm3] 2L_9541151_SNP [dm6]	C	T	7.671e^-5	0.836	NON_SYNONYMOUS_CODING CG17855
3L	4697037	3L_4697037_SNP [dm3] 3L_4697037_SNP [dm6]	G	C	7.791e^-5	0.845	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	9086645	X_9086645_SNP [dm3] X_9192612_SNP [dm6]	T	C	7.855e^-5	0.847	UPSTREAM CG12056 DOWNSTREAM CG12057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	18495852	X_18495852_SNP [dm3] X_18601819_SNP [dm6]	T	A	7.956e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9541134	2L_9541134_SNP [dm3] 2L_9541134_SNP [dm6]	G	A	8.010e^-5	0.854	NON_SYNONYMOUS_CODING CG17855
2R	13390790	2R_13390790_SNP [dm3] 2R_17503285_SNP [dm6]	G	T	8.064e^-5	0.854	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
X	7500111	X_7500111_SNP [dm3] X_7606078_SNP [dm6]	C	A	8.267e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	4071126	2L_4071126_SNP [dm3] 2L_4071126_SNP [dm6]	A	G	8.286e^-5	0.856	INTRON ed
2L	14698606	2L_14698606_SNP [dm3] 2L_14698606_SNP [dm6]	C	A	8.310e^-5	0.856	INTERGENIC
2L	20996903	2L_20996903_SNP [dm3] 2L_20996903_SNP [dm6]	C	A	8.337e^-5	0.856	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4709708	2L_4709708_DEL [dm3] 2L_4709708_DEL [dm6]	TCAGGATTACTTT...	T	8.337e^-5	0.856	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13770004	X_13770004_SNP [dm3] X_13875971_SNP [dm6]	C	A	8.464e^-5	0.856	INTRON mamo
2R	14881698	2R_14881698_SNP [dm3] 2R_18994193_SNP [dm6]	C	T	8.465e^-5	0.856	UPSTREAM snoRNA:abba-a INTRON tn
2R	13648066	2R_13648066_SNP [dm3] 2R_17760561_SNP [dm6]	T	C	8.489e^-5	0.856	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	20318706	X_20318706_SNP [dm3] X_20447679_SNP [dm6]	T	A	8.526e^-5	0.856	DOWNSTREAM CG42578 INTERGENIC
2L	2593048	2L_2593048_SNP [dm3] 2L_2593048_SNP [dm6]	G	A	8.534e^-5	0.856	DOWNSTREAM CG15394 INTERGENIC
3L	16266222	3L_16266222_SNP [dm3] 3L_16273122_SNP [dm6]	A	T	8.655e^-5	0.858	INTRON CG13066
3R	11125694	3R_11125694_SNP [dm3] 3R_15299972_SNP [dm6]	C	T	8.709e^-5	0.858	INTRON Tm1
2L	21999408	2L_21999408_SNP [dm3] 2L_21999408_SNP [dm6]	C	A	8.860e^-5	0.858	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2L	5508524	2L_5508524_DEL [dm3] 2L_5508524_DEL [dm6]	AA	A	8.908e^-5	0.858	INTERGENIC
3R	8770833	3R_8770833_INS [dm3] 3R_12945111_INS [dm6]	G	GGGA	8.921e^-5	0.858	INTERGENIC
3L	7548608	3L_7548608_SNP [dm3] 3L_7555508_SNP [dm6]	T	C	8.959e^-5	0.858	DOWNSTREAM CG14837 INTERGENIC
X	8152394	X_8152394_SNP [dm3] X_8258361_SNP [dm6]	C	T	8.971e^-5	0.858	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7322212	2R_7322212_SNP [dm3] 2R_11434707_SNP [dm6]	A	T	8.989e^-5	0.858	INTERGENIC
2L	6641249	2L_6641249_SNP [dm3] 2L_6641249_SNP [dm6]	A	T	9.028e^-5	0.858	INTRON CG31635
3R	11339374	3R_11339374_SNP [dm3] 3R_15513652_SNP [dm6]	T	C	9.040e^-5	0.858	INTERGENIC
2R	7001077	2R_7001077_SNP [dm3] 2R_11113572_SNP [dm6]	G	A	9.053e^-5	0.858	INTRON luna
3L	6909656	3L_6909656_SNP [dm3] 3L_6916556_SNP [dm6]	A	C	9.111e^-5	0.859	INTERGENIC
3L	3773311	3L_3773311_SNP [dm3] 3L_3773311_SNP [dm6]	T	A	9.174e^-5	0.86	INTRON CG32264
3R	5693873	3R_5693873_SNP [dm3] 3R_9868151_SNP [dm6]	A	G	9.289e^-5	0.866	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	10534419	3L_10534419_SNP [dm3] 3L_10541319_SNP [dm6]	G	T	9.378e^-5	0.866	INTRON A2bp1
2R	11809886	2R_11809886_DEL [dm3] 2R_15922381_DEL [dm6]	GAGTAG	G	9.454e^-5	0.866	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20443293	3R_20443293_SNP [dm3] 3R_24617571_SNP [dm6]	T	C	9.485e^-5	0.866	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13729937	2R_13729937_SNP [dm3] 2R_17842432_SNP [dm6]	T	G	9.513e^-5	0.866	UTR_3_PRIME grh DOWNSTREAM grh
3R	16868802	3R_16868802_SNP [dm3] 3R_21043080_SNP [dm6]	T	C	9.604e^-5	0.866	UPSTREAM Dhc93AB INTERGENIC
3R	22039530	3R_22039530_SNP [dm3] 3R_26213808_SNP [dm6]	A	G	9.610e^-5	0.866	INTERGENIC
3L	13689865	3L_13689865_SNP [dm3] 3L_13696765_SNP [dm6]	C	T	9.676e^-5	0.866	INTRON bru-3
2L	1374527	2L_1374527_SNP [dm3] 2L_1374527_SNP [dm6]	C	T	9.684e^-5	0.866	INTERGENIC
2R	14881774	2R_14881774_SNP [dm3] 2R_18994269_SNP [dm6]	A	T	9.700e^-5	0.866	UPSTREAM snoRNA:abba-a INTRON tn
2L	3348272	2L_3348272_SNP [dm3] 2L_3348272_SNP [dm6]	A	G	9.882e^-5	0.873	INTRON E23
2L	10561534	2L_10561534_SNP [dm3] 2L_10561534_SNP [dm6]	A	C	9.922e^-5	0.873	INTRON Trim9
2R	13730223	2R_13730223_SNP [dm3] 2R_17842718_SNP [dm6]	C	T	9.935e^-5	0.873	UTR_3_PRIME grh UPSTREAM olf186-F
2R	19402069	2R_19402069_SNP [dm3] 2R_23514546_SNP [dm6]	A	G	9.992e^-5	0.873	INTERGENIC
X	8152362	X_8152362_SNP [dm3] X_8258329_SNP [dm6]	T	C	1.001e^-4	0.873	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
3L	3593420	3L_3593420_SNP [dm3] 3L_3593420_SNP [dm6]	T	C	1.016e^-4	0.88	SYNONYMOUS_CODING Eip63E UPSTREAM snRNA:U7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17449913	2R_17449913_SNP [dm3] 2R_21562408_SNP [dm6]	T	C	1.018e^-4	0.88	INTRON CG10440
2L	14697273	2L_14697273_SNP [dm3] 2L_14697273_SNP [dm6]	G	C	1.029e^-4	0.884	INTERGENIC
3L	17778179	3L_17778179_SNP [dm3] 3L_17785079_SNP [dm6]	G	C	1.038e^-4	0.884	EXON CR44668
3L	3594045	3L_3594045_SNP [dm3] 3L_3594045_SNP [dm6]	T	C	1.047e^-4	0.884	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11216091	3L_11216091_SNP [dm3] 3L_11222991_SNP [dm6]	A	T	1.051e^-4	0.884	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3595910	2R_3595910_SNP [dm3] 2R_7708405_SNP [dm6]	A	T	1.051e^-4	0.884	INTRON tor
3L	10479345	3L_10479345_SNP [dm3] 3L_10486245_SNP [dm6]	G	T	1.051e^-4	0.884	INTRON A2bp1
3L	11118414	3L_11118414_INS [dm3] 3L_11125314_INS [dm6]	A	ACAG	1.070e^-4	0.894	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	13249647	2L_13249647_SNP [dm3] 2L_13249647_SNP [dm6]	G	A	1.072e^-4	0.894	SYNONYMOUS_CODING CG16820
3L	4398834	3L_4398834_SNP [dm3] 3L_4398834_SNP [dm6]	A	T	1.085e^-4	0.895	INTRON slow
2L	3350711	2L_3350711_SNP [dm3] 2L_3350711_SNP [dm6]	A	G	1.086e^-4	0.895	INTRON E23
X	10517853	X_10517853_SNP [dm3] X_10623820_SNP [dm6]	G	T	1.089e^-4	0.895	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3R	22355355	3R_22355355_DEL [dm3] 3R_26529633_DEL [dm6]	GGGATGTTGTGGGTTGCCCC...	G	1.100e^-4	0.895	INTRON plum
2R	18920402	2R_18920402_DEL [dm3] 2R_23032879_DEL [dm6]	GTT	G	1.117e^-4	0.895	INTRON twi & 1 other
3L	2098464	3L_2098464_SNP [dm3] 3L_2098464_SNP [dm6]	A	T	1.122e^-4	0.895	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2118258	3L_2118258_SNP [dm3] 3L_2118258_SNP [dm6]	T	C	1.127e^-4	0.895	INTRON zormin
3R	16870055	3R_16870055_SNP [dm3] 3R_21044333_SNP [dm6]	C	T	1.128e^-4	0.895	NON_SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
2R	14441997	2R_14441997_SNP [dm3] 2R_18554492_SNP [dm6]	T	A	1.129e^-4	0.895	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3291828	3L_3291828_SNP [dm3] 3L_3291828_SNP [dm6]	A	T	1.136e^-4	0.895	DOWNSTREAM CG12017 INTRON CG12009
3R	6817480	3R_6817480_SNP [dm3] 3R_10991758_SNP [dm6]	C	T	1.136e^-4	0.895	INTRON CG34114
X	8324338	X_8324338_INS [dm3] X_8430305_INS [dm6]	A	AA	1.136e^-4	0.895	UTR_3_PRIME Trf2 DOWNSTREAM Trf2
2L	830105	2L_830105_SNP [dm3] 2L_830105_SNP [dm6]	T	C	1.137e^-4	0.895	INTRON dock	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17338029	2R_17338029_SNP [dm3] 2R_21450524_SNP [dm6]	A	T	1.143e^-4	0.895	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15269785	2R_15269785_SNP [dm3] 2R_19382280_SNP [dm6]	T	C	1.151e^-4	0.895	SYNONYMOUS_CODING CG10073
2R	13354399	2R_13354399_SNP [dm3] 2R_17466894_SNP [dm6]	G	A	1.153e^-4	0.895	SYNONYMOUS_CODING Tes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7322203	2R_7322203_DEL [dm3] 2R_11434698_DEL [dm6]	TA	T	1.162e^-4	0.895	INTERGENIC
X	8152386	X_8152386_SNP [dm3] X_8258353_SNP [dm6]	C	G	1.166e^-4	0.895	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4148582	2R_4148582_DEL [dm3] 2R_8261077_DEL [dm6]	CCCCAAC	C	1.169e^-4	0.895	CODON_DELETION CG2291 DOWNSTREAM CG14759
X	8324359	X_8324359_SNP [dm3] X_8430326_SNP [dm6]	A	G	1.169e^-4	0.895	UTR_3_PRIME Trf2 DOWNSTREAM Trf2
2R	16829074	2R_16829074_SNP [dm3] 2R_20941569_SNP [dm6]	T	C	1.178e^-4	0.895	INTERGENIC
3L	4842961	3L_4842961_SNP [dm3] 3L_4842961_SNP [dm6]	A	T	1.181e^-4	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14093070	3L_14093070_SNP [dm3] 3L_14099970_SNP [dm6]	C	T	1.184e^-4	0.895	INTERGENIC
2R	17635639	2R_17635639_SNP [dm3] 2R_21748134_SNP [dm6]	A	G	1.193e^-4	0.899	INTERGENIC
3L	13374256	3L_13374256_SNP [dm3] 3L_13381156_SNP [dm6]	C	T	1.209e^-4	0.899	NON_SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12421999	X_12421999_SNP [dm3] X_12527966_SNP [dm6]	A	G	1.224e^-4	0.899	INTRON CG43921
2R	18920401	2R_18920401_SNP [dm3] 2R_23032878_SNP [dm6]	T	G	1.233e^-4	0.899	INTRON twi & 1 other
3L	7946959	3L_7946959_SNP [dm3] 3L_7953859_SNP [dm6]	A	G	1.235e^-4	0.899	INTERGENIC
3R	17209156	3R_17209156_SNP [dm3] 3R_21383434_SNP [dm6]	G	A	1.245e^-4	0.899	INTERGENIC
3L	6176618	3L_6176618_SNP [dm3] 3L_6183518_SNP [dm6]	G	A	1.245e^-4	0.899	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7475779	3L_7475779_INS [dm3] 3L_7482679_INS [dm6]	T	TTCAT	1.253e^-4	0.899	INTERGENIC
3L	3773339	3L_3773339_SNP [dm3] 3L_3773339_SNP [dm6]	C	A	1.253e^-4	0.899	INTRON CG32264
3L	4075614	3L_4075614_SNP [dm3] 3L_4075614_SNP [dm6]	C	T	1.257e^-4	0.899	SYNONYMOUS_CODING Gad1
3R	24232815	3R_24232815_SNP [dm3] 3R_28407093_SNP [dm6]	A	T	1.267e^-4	0.899	INTERGENIC
3L	7947176	3L_7947176_SNP [dm3] 3L_7954076_SNP [dm6]	C	T	1.273e^-4	0.899	INTERGENIC
2R	12372857	2R_12372857_SNP [dm3] 2R_16485352_SNP [dm6]	A	C	1.274e^-4	0.899	SYNONYMOUS_CODING CG15712	TF binding site mE1_TFBS_HSA
3L	15263760	3L_15263760_DEL [dm3] 3L_15270660_DEL [dm6]	AT	A	1.276e^-4	0.899	INTERGENIC
2L	10413794	2L_10413794_SNP [dm3] 2L_10413794_SNP [dm6]	T	A	1.278e^-4	0.899	UPSTREAM Klp31E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	7959564	2R_7959564_SNP [dm3] 2R_12072059_SNP [dm6]	C	G	1.279e^-4	0.899	INTRON CG8888
2L	9543391	2L_9543391_SNP [dm3] 2L_9543391_SNP [dm6]	C	T	1.282e^-4	0.899	SYNONYMOUS_CODING Cpr30B UPSTREAM CG13113 DOWNSTREAM CG17855
X	14887175	X_14887175_DEL [dm3] X_14993142_DEL [dm6]	ACA	A	1.293e^-4	0.899	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19710536	2R_19710536_SNP [dm3] 2R_23823013_SNP [dm6]	T	C	1.301e^-4	0.899	DOWNSTREAM CG4763 INTRON CG5549
X	12421985	X_12421985_DEL [dm3] X_12527952_DEL [dm6]	CTAACAC	C	1.315e^-4	0.899	INTRON CG43921
X	20954887	X_20954887_SNP [dm3] X_21083860_SNP [dm6]	T	C	1.324e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16490829	2L_16490829_SNP [dm3] 2L_16490829_SNP [dm6]	A	G	1.331e^-4	0.899	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	10534414	3L_10534414_SNP [dm3] 3L_10541314_SNP [dm6]	T	C	1.332e^-4	0.899	INTRON A2bp1
2L	3350396	2L_3350396_SNP [dm3] 2L_3350396_SNP [dm6]	C	T	1.333e^-4	0.899	INTRON E23
2L	14003141	2L_14003141_SNP [dm3] 2L_14003141_SNP [dm6]	G	A	1.338e^-4	0.899	INTERGENIC
3R	13936811	3R_13936811_SNP [dm3] 3R_18111089_SNP [dm6]	T	C	1.342e^-4	0.899	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1098034	2L_1098034_SNP [dm3] 2L_1098034_SNP [dm6]	C	T	1.350e^-4	0.899	INTRON CG4629
2L	3571566	2L_3571566_SNP [dm3] 2L_3571566_SNP [dm6]	C	T	1.356e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	11118449	3L_11118449_INS [dm3] 3L_11125349_INS [dm6]	A	AAACTTATTCTA...	1.359e^-4	0.899	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	3594186	3L_3594186_SNP [dm3] 3L_3594186_SNP [dm6]	T	G	1.368e^-4	0.899	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22420401	3R_22420401_SNP [dm3] 3R_26594679_SNP [dm6]	G	T	1.378e^-4	0.899	INTRON scrib
2L	14717249	2L_14717249_SNP [dm3] 2L_14717249_SNP [dm6]	G	A	1.379e^-4	0.899	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11118425	3L_11118425_SNP [dm3] 3L_11125325_SNP [dm6]	A	T	1.380e^-4	0.899	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	10622608	3R_10622608_SNP [dm3] 3R_14796886_SNP [dm6]	A	G	1.381e^-4	0.899	INTRON CG14855	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17459965	2R_17459965_SNP [dm3] 2R_21572460_SNP [dm6]	G	T	1.382e^-4	0.899	INTRON CG10440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2796820	3L_2796820_SNP [dm3] 3L_2796820_SNP [dm6]	G	T	1.384e^-4	0.899	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	4369954	3L_4369954_SNP [dm3] 3L_4369954_SNP [dm6]	A	G	1.385e^-4	0.899	SYNONYMOUS_CODING DopEcR
2R	7178033	2R_7178033_SNP [dm3] 2R_11290528_SNP [dm6]	T	C	1.385e^-4	0.899	SYNONYMOUS_CODING CG18335 UPSTREAM fbl6 DOWNSTREAM dare	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6807184	2L_6807184_SNP [dm3] 2L_6807184_SNP [dm6]	G	A	1.385e^-4	0.899	INTERGENIC
3L	6764206	3L_6764206_SNP [dm3] 3L_6771106_SNP [dm6]	C	A	1.388e^-4	0.899	INTERGENIC
3L	3594048	3L_3594048_SNP [dm3] 3L_3594048_SNP [dm6]	G	A	1.400e^-4	0.899	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9543530	2L_9543530_SNP [dm3] 2L_9543530_SNP [dm6]	T	C	1.403e^-4	0.899	UTR_3_PRIME Cpr30B UPSTREAM CG13113
2R	7001076	2R_7001076_SNP [dm3] 2R_11113571_SNP [dm6]	A	T	1.408e^-4	0.899	INTRON luna
2L	3350170	2L_3350170_INS [dm3] 2L_3350170_INS [dm6]	TC	AAAA	1.415e^-4	0.899	INTRON E23
2L	18286747	2L_18286747_SNP [dm3] 2L_18286747_SNP [dm6]	C	G	1.416e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25598224	3R_25598224_SNP [dm3] 3R_29772502_SNP [dm6]	A	T	1.419e^-4	0.899	UPSTREAM kay INTRON kay	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9539541	2L_9539541_SNP [dm3] 2L_9539541_SNP [dm6]	C	A	1.420e^-4	0.899	UTR_3_PRIME Oatp30B UPSTREAM CG17855
X	15461720	X_15461720_SNP [dm3] X_15567687_SNP [dm6]	T	G	1.421e^-4	0.899	INTERGENIC
3L	6348333	3L_6348333_SNP [dm3] 3L_6355233_SNP [dm6]	T	G	1.424e^-4	0.899	INTERGENIC
3L	2118823	3L_2118823_SNP [dm3] 3L_2118823_SNP [dm6]	G	C	1.428e^-4	0.899	NON_SYNONYMOUS_CODING zormin UTR_3_PRIME zormin
2R	12630051	2R_12630051_SNP [dm3] 2R_16742546_SNP [dm6]	A	G	1.450e^-4	0.907	INTERGENIC
2R	7654322	2R_7654322_SNP [dm3] 2R_11766817_SNP [dm6]	A	C	1.455e^-4	0.907	INTRON ths
3R	19604436	3R_19604436_SNP [dm3] 3R_23778714_SNP [dm6]	C	G	1.462e^-4	0.907	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15441484	2L_15441484_SNP [dm3] 2L_15441484_SNP [dm6]	T	A	1.464e^-4	0.907	UPSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16690756	2R_16690756_DEL [dm3] 2R_20803251_DEL [dm6]	TG	T	1.487e^-4	0.907	INTERGENIC
X	8152426	X_8152426_SNP [dm3] X_8258393_SNP [dm6]	G	T	1.490e^-4	0.907	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1881714	3L_1881714_SNP [dm3] 3L_1881714_SNP [dm6]	G	T	1.491e^-4	0.907	INTRON CG13937
2L	14492972	2L_14492972_SNP [dm3] 2L_14492972_SNP [dm6]	A	G	1.494e^-4	0.907	SYNONYMOUS_CODING noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11118428	3L_11118428_SNP [dm3] 3L_11125328_SNP [dm6]	A	T	1.497e^-4	0.907	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	8227362	2L_8227362_SNP [dm3] 2L_8227362_SNP [dm6]	T	G	1.505e^-4	0.907	INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11118385	3L_11118385_SNP [dm3] 3L_11125285_SNP [dm6]	C	G	1.509e^-4	0.907	INTRON CG42575	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	17991832	2R_17991832_SNP [dm3] 2R_22104327_SNP [dm6]	C	T	1.518e^-4	0.907	NON_SYNONYMOUS_CODING CG6613	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18466215	X_18466215_DEL [dm3] X_18572182_DEL [dm6]	CGC	C	1.518e^-4	0.907	UTR_3_PRIME Bx DOWNSTREAM Bx
2L	11791201	2L_11791201_SNP [dm3] 2L_11791201_SNP [dm6]	A	G	1.522e^-4	0.907	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14932
3L	1505884	3L_1505884_SNP [dm3] 3L_1505884_SNP [dm6]	C	T	1.525e^-4	0.907	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad
3L	2735695	3L_2735695_SNP [dm3] 3L_2735695_SNP [dm6]	T	A	1.539e^-4	0.907	INTRON Mrtf
X	6794411	X_6794411_SNP [dm3] X_6900378_SNP [dm6]	T	A	1.540e^-4	0.907	INTERGENIC
2L	7265055	2L_7265055_SNP [dm3] 2L_7265055_SNP [dm6]	G	A	1.557e^-4	0.907	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16692762	2R_16692762_SNP [dm3] 2R_20805257_SNP [dm6]	A	C	1.561e^-4	0.907	INTERGENIC
2L	20851769	2L_20851769_SNP [dm3] 2L_20851769_SNP [dm6]	A	T	1.561e^-4	0.907	UPSTREAM twit DOWNSTREAM CG14402 INTERGENIC	TF binding site mE1_TFBS_inv
3L	3415221	3L_3415221_SNP [dm3] 3L_3415221_SNP [dm6]	G	A	1.567e^-4	0.907	INTRON sty
3R	17209071	3R_17209071_DEL [dm3] 3R_21383349_DEL [dm6]	ATACA	A	1.574e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs
2R	7176897	2R_7176897_DEL [dm3] 2R_11289392_DEL [dm6]	CC	C	1.576e^-4	0.907	SPLICE_SITE_REGION fbl6 UTR_5_PRIME fbl6 DOWNSTREAM CG18335 INTRON fbl6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4436755	2L_4436755_SNP [dm3] 2L_4436755_SNP [dm6]	A	G	1.577e^-4	0.907	INTRON CG15431
2R	12189414	2R_12189414_SNP [dm3] 2R_16301909_SNP [dm6]	C	T	1.585e^-4	0.907	EXON CR45232	TF binding site mE1_TFBS_chinmo
3R	19563556	3R_19563556_SNP [dm3] 3R_23737834_SNP [dm6]	A	C	1.587e^-4	0.907	INTRON Hmgcr
2L	3566169	2L_3566169_SNP [dm3] 2L_3566169_SNP [dm6]	G	A	1.587e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14705040	2L_14705040_SNP [dm3] 2L_14705040_SNP [dm6]	A	G	1.589e^-4	0.907	INTERGENIC
X	8413456	X_8413456_SNP [dm3] X_8519423_SNP [dm6]	T	C	1.591e^-4	0.907	INTRON Nrg	TF binding site mE1_TFBS_HSA
2R	19322816	2R_19322816_SNP [dm3] 2R_23435293_SNP [dm6]	G	C	1.604e^-4	0.907	INTERGENIC
X	16029178	X_16029178_SNP [dm3] X_16135145_SNP [dm6]	A	T	1.607e^-4	0.907	INTRON disco-r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	14342048	3L_14342048_SNP [dm3] 3L_14348948_SNP [dm6]	G	A	1.611e^-4	0.907	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10283431	X_10283431_SNP [dm3] X_10389398_SNP [dm6]	A	T	1.615e^-4	0.907	INTRON flw
2R	17277030	2R_17277030_SNP [dm3] 2R_21389525_SNP [dm6]	G	A	1.615e^-4	0.907	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2L	7082096	2L_7082096_SNP [dm3] 2L_7082096_SNP [dm6]	C	T	1.616e^-4	0.907	INTRON Pvf2	TF binding site mE1_TFBS_cad
X	18877541	X_18877541_SNP [dm3] X_18983508_SNP [dm6]	C	G	1.621e^-4	0.907	INTRON CG43759
2R	15269722	2R_15269722_SNP [dm3] 2R_19382217_SNP [dm6]	C	T	1.622e^-4	0.907	SYNONYMOUS_CODING CG10073
2L	14699551	2L_14699551_SNP [dm3] 2L_14699551_SNP [dm6]	A	G	1.625e^-4	0.907	INTERGENIC
2R	12628974	2R_12628974_SNP [dm3] 2R_16741469_SNP [dm6]	T	A	1.648e^-4	0.916	INTERGENIC
3L	3737956	3L_3737956_SNP [dm3] 3L_3737956_SNP [dm6]	A	C	1.669e^-4	0.916	INTRON CG32264
3L	1934688	3L_1934688_SNP [dm3] 3L_1934688_SNP [dm6]	T	C	1.669e^-4	0.916	SYNONYMOUS_CODING CG5687
3R	14834065	3R_14834065_SNP [dm3] 3R_19008343_SNP [dm6]	C	T	1.678e^-4	0.916	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14939952	2R_14939952_SNP [dm3] 2R_19052447_SNP [dm6]	A	T	1.681e^-4	0.916	INTERGENIC
2L	21095024	2L_21095024_SNP [dm3] 2L_21095024_SNP [dm6]	T	C	1.681e^-4	0.916	UTR_3_PRIME CG12050 DOWNSTREAM CG14397
2R	19105758	2R_19105758_SNP [dm3] 2R_23218235_SNP [dm6]	A	G	1.685e^-4	0.916	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	5736651	X_5736651_SNP [dm3] X_5842618_SNP [dm6]	G	A	1.688e^-4	0.916	INTERGENIC
2L	3566154	2L_3566154_SNP [dm3] 2L_3566154_SNP [dm6]	G	A	1.688e^-4	0.916	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15787629	2R_15787629_SNP [dm3] 2R_19900124_SNP [dm6]	T	G	1.696e^-4	0.916	INTERGENIC
3L	1514147	3L_1514147_SNP [dm3] 3L_1514147_SNP [dm6]	G	C	1.705e^-4	0.916	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
X	6526277	X_6526277_SNP [dm3] X_6632244_SNP [dm6]	A	G	1.710e^-4	0.916	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10479348	3L_10479348_SNP [dm3] 3L_10486248_SNP [dm6]	T	C	1.711e^-4	0.916	INTRON A2bp1
2R	13306563	2R_13306563_SNP [dm3] 2R_17419058_SNP [dm6]	G	T	1.714e^-4	0.916	INTRON cnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	13306564	2R_13306564_SNP [dm3] 2R_17419059_SNP [dm6]	T	G	1.714e^-4	0.916	INTRON cnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	14878478	3L_14878478_SNP [dm3] 3L_14885378_SNP [dm6]	C	T	1.722e^-4	0.916	EXON CR44702
3L	4697035	3L_4697035_SNP [dm3] 3L_4697035_SNP [dm6]	C	G	1.724e^-4	0.916	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5903706	3L_5903706_SNP [dm3] 3L_5910606_SNP [dm6]	A	C	1.751e^-4	0.917	DOWNSTREAM CG13288 INTRON CG13288
3L	5903715	3L_5903715_SNP [dm3] 3L_5910615_SNP [dm6]	A	G	1.751e^-4	0.917	DOWNSTREAM CG13288 INTRON CG13288
2R	2991565	2R_2991565_SNP [dm3] 2R_7104060_SNP [dm6]	A	G	1.756e^-4	0.917	INTRON esn
2L	13167722	2L_13167722_SNP [dm3] 2L_13167722_SNP [dm6]	T	A	1.758e^-4	0.917	NON_SYNONYMOUS_CODING Sir2
3L	15442885	3L_15442885_SNP [dm3] 3L_15449785_SNP [dm6]	T	G	1.772e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6127734	3L_6127734_SNP [dm3] 3L_6134634_SNP [dm6]	G	C	1.785e^-4	0.917	DOWNSTREAM Lcp65Ag1 INTERGENIC
3L	2778439	3L_2778439_SNP [dm3] 3L_2778439_SNP [dm6]	A	G	1.788e^-4	0.917	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9541772	2L_9541772_SNP [dm3] 2L_9541772_SNP [dm6]	C	T	1.794e^-4	0.917	UTR_3_PRIME CG17855
3R	24231860	3R_24231860_SNP [dm3] 3R_28406138_SNP [dm6]	A	T	1.796e^-4	0.917	INTERGENIC
X	18495529	X_18495529_SNP [dm3] X_18601496_SNP [dm6]	G	A	1.798e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2882567	2L_2882567_SNP [dm3] 2L_2882567_SNP [dm6]	G	A	1.802e^-4	0.917	SYNONYMOUS_CODING NTPase INTRON NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6292049	3L_6292049_SNP [dm3] 3L_6298949_SNP [dm6]	T	A	1.804e^-4	0.917	INTERGENIC
2R	4205831	2R_4205831_INS [dm3] 2R_8318326_INS [dm6]	C	CAAC	1.817e^-4	0.917	INTERGENIC
3L	9306738	3L_9306738_SNP [dm3] 3L_9313638_SNP [dm6]	T	A	1.824e^-4	0.917	INTERGENIC
2L	7906722	2L_7906722_SNP [dm3] 2L_7906722_SNP [dm6]	T	C	1.825e^-4	0.917	INTRON Snoo
3L	16215119	3L_16215119_SNP [dm3] 3L_16222019_SNP [dm6]	C	A	1.830e^-4	0.917	UPSTREAM tRNA:CR32153 INTERGENIC
2L	3240259	2L_3240259_INS [dm3] 2L_3240259_INS [dm6]	A	ACATGTCTGATA...	1.840e^-4	0.917	INTERGENIC
3L	2735698	3L_2735698_SNP [dm3] 3L_2735698_SNP [dm6]	T	C	1.841e^-4	0.917	INTRON Mrtf
2L	20970760	2L_20970760_SNP [dm3] 2L_20970760_SNP [dm6]	G	T	1.841e^-4	0.917	INTRON CG42238
2R	13496369	2R_13496369_SNP [dm3] 2R_17608864_SNP [dm6]	G	T	1.842e^-4	0.917	NON_SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_sens
X	20954907	X_20954907_SNP [dm3] X_21083880_SNP [dm6]	G	C	1.843e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20855487	2L_20855487_SNP [dm3] 2L_20855487_SNP [dm6]	A	C	1.844e^-4	0.917	INTRON twit
2L	16490819	2L_16490819_SNP [dm3] 2L_16490819_SNP [dm6]	T	G	1.844e^-4	0.917	UPSTREAM Tpr2 DOWNSTREAM CG4580 EXON CR44994	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	14939699	2R_14939699_INS [dm3] 2R_19052194_INS [dm6]	T	TT	1.848e^-4	0.917	INTERGENIC
2L	3223597	2L_3223597_SNP [dm3] 2L_3223597_SNP [dm6]	T	C	1.848e^-4	0.917	INTERGENIC
2R	16727915	2R_16727915_SNP [dm3] 2R_20840410_SNP [dm6]	C	T	1.863e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
X	6526268	X_6526268_SNP [dm3] X_6632235_SNP [dm6]	G	A	1.869e^-4	0.917	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21112165	X_21112165_SNP [dm3] X_21241138_SNP [dm6]	G	A	1.871e^-4	0.917	INTRON CG32521
2L	9413570	2L_9413570_SNP [dm3] 2L_9413570_SNP [dm6]	C	G	1.875e^-4	0.917	INTRON Shawl
3L	3942390	3L_3942390_SNP [dm3] 3L_3942390_SNP [dm6]	G	T	1.877e^-4	0.917	NON_SYNONYMOUS_CODING CG10863 UPSTREAM CG14982
3R	10296829	3R_10296829_SNP [dm3] 3R_14471107_SNP [dm6]	C	G	1.877e^-4	0.917	INTRON cv-c
2L	11178657	2L_11178657_SNP [dm3] 2L_11178657_SNP [dm6]	T	C	1.882e^-4	0.917	UPSTREAM CG4788 INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20273871	3R_20273871_SNP [dm3] 3R_24448149_SNP [dm6]	T	A	1.908e^-4	0.925	INTRON nAChRalpha1
X	12422006	X_12422006_SNP [dm3] X_12527973_SNP [dm6]	A	C	1.911e^-4	0.925	INTRON CG43921
2L	8376138	2L_8376138_SNP [dm3] 2L_8376138_SNP [dm6]	A	T	1.914e^-4	0.925	SYNONYMOUS_CODING CG13390 UPSTREAM CG17294 DOWNSTREAM Wdr82	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	10794529	X_10794529_SNP [dm3] X_10900496_SNP [dm6]	C	T	1.928e^-4	0.928	UTR_5_PRIME CG15208	TF binding site BDTNP1_TFBS_twi
2L	4944263	2L_4944263_SNP [dm3] 2L_4944263_SNP [dm6]	T	C	1.930e^-4	0.928	UTR_3_PRIME CG14044 & 1 other
3L	2792055	3L_2792055_SNP [dm3] 3L_2792055_SNP [dm6]	G	T	1.946e^-4	0.932	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
3R	22095934	3R_22095934_SNP [dm3] 3R_26270212_SNP [dm6]	A	G	1.949e^-4	0.932	INTRON CG6154
3R	17209179	3R_17209179_SNP [dm3] 3R_21383457_SNP [dm6]	T	G	1.957e^-4	0.932	INTERGENIC
2R	11901525	2R_11901525_SNP [dm3] 2R_16014020_SNP [dm6]	A	G	1.974e^-4	0.932	SYNONYMOUS_CODING Prosbeta1 UPSTREAM Rrp42 DOWNSTREAM CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc
2L	9413558	2L_9413558_SNP [dm3] 2L_9413558_SNP [dm6]	G	C	1.975e^-4	0.932	INTRON Shawl
2R	13901610	2R_13901610_SNP [dm3] 2R_18014105_SNP [dm6]	G	A	1.980e^-4	0.932	INTERGENIC
3R	19054441	3R_19054441_SNP [dm3] 3R_23228719_SNP [dm6]	G	C	1.991e^-4	0.932	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16115828	2R_16115828_SNP [dm3] 2R_20228323_SNP [dm6]	C	T	1.994e^-4	0.932	INTERGENIC
2L	22047812	2L_22047812_SNP [dm3] 2L_22047812_SNP [dm6]	A	G	1.996e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	9304845	3L_9304845_SNP [dm3] 3L_9311745_SNP [dm6]	A	C	2.001e^-4	0.932	INTERGENIC
2L	9542798	2L_9542798_SNP [dm3] 2L_9542798_SNP [dm6]	T	C	2.005e^-4	0.932	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
3L	7265321	3L_7265321_SNP [dm3] 3L_7272221_SNP [dm6]	A	G	2.006e^-4	0.932	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3L	6897157	3L_6897157_SNP [dm3] 3L_6904057_SNP [dm6]	T	C	2.007e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4415257	3L_4415257_SNP [dm3] 3L_4415257_SNP [dm6]	C	A	2.008e^-4	0.932	INTRON DOR
2R	20181276	2R_20181276_SNP [dm3] 2R_24293753_SNP [dm6]	C	G	2.012e^-4	0.932	UPSTREAM CG3394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19604463	3R_19604463_SNP [dm3] 3R_23778741_SNP [dm6]	G	T	2.038e^-4	0.94	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19604493	3R_19604493_SNP [dm3] 3R_23778771_SNP [dm6]	G	A	2.039e^-4	0.94	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3201827	3L_3201827_SNP [dm3] 3L_3201827_SNP [dm6]	G	A	2.050e^-4	0.942	SYNONYMOUS_CODING gry DOWNSTREAM CG32271
3R	21400230	3R_21400230_SNP [dm3] 3R_25574508_SNP [dm6]	C	T	2.063e^-4	0.945	INTRON msi
2R	12271742	2R_12271742_SNP [dm3] 2R_16384237_SNP [dm6]	G	A	2.067e^-4	0.945	UTR_3_PRIME CG43187	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11171116	2R_11171116_SNP [dm3] 2R_15283611_SNP [dm6]	C	G	2.073e^-4	0.945	INTRON Trpm
X	20266332	X_20266332_SNP [dm3] X_20395305_SNP [dm6]	C	G	2.076e^-4	0.945	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15197674	3R_15197674_SNP [dm3] 3R_19371952_SNP [dm6]	A	G	2.097e^-4	0.949	INTRON Ino80
2L	6809736	2L_6809736_SNP [dm3] 2L_6809736_SNP [dm6]	A	G	2.101e^-4	0.949	INTERGENIC
3R	14831766	3R_14831766_SNP [dm3] 3R_19006044_SNP [dm6]	G	A	2.106e^-4	0.949	INTRON gukh	TF binding site mE1_TFBS_chinmo
3R	11331949	3R_11331949_SNP [dm3] 3R_15506227_SNP [dm6]	G	A	2.108e^-4	0.949	INTERGENIC
3L	6295623	3L_6295623_SNP [dm3] 3L_6302523_SNP [dm6]	G	T	2.110e^-4	0.949	DOWNSTREAM CR45420 INTERGENIC
2L	18363992	2L_18363992_SNP [dm3] 2L_18363992_SNP [dm6]	G	A	2.123e^-4	0.953	INTRON Fas3	TF binding site BDTNP1_TFBS_dl
2L	14713466	2L_14713466_SNP [dm3] 2L_14713466_SNP [dm6]	A	G	2.133e^-4	0.954	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
3L	3583947	3L_3583947_SNP [dm3] 3L_3583947_SNP [dm6]	T	C	2.136e^-4	0.954	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1676146	3L_1676146_SNP [dm3] 3L_1676146_SNP [dm6]	G	T	2.158e^-4	0.955	INTRON CG7991
X	6141133	X_6141133_SNP [dm3] X_6247100_SNP [dm6]	G	A	2.163e^-4	0.955	SYNONYMOUS_CODING Rbcn-3A	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2774078	3L_2774078_SNP [dm3] 3L_2774078_SNP [dm6]	G	C	2.164e^-4	0.955	UPSTREAM Atg2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6728633	2L_6728633_SNP [dm3] 2L_6728633_SNP [dm6]	G	T	2.166e^-4	0.955	SYNONYMOUS_CODING Liprin-alpha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19505731	2R_19505731_SNP [dm3] 2R_23618208_SNP [dm6]	A	G	2.175e^-4	0.955	INTERGENIC
3L	7475604	3L_7475604_SNP [dm3] 3L_7482504_SNP [dm6]	G	T	2.180e^-4	0.955	INTERGENIC
2L	14493065	2L_14493065_SNP [dm3] 2L_14493065_SNP [dm6]	A	C	2.183e^-4	0.955	SYNONYMOUS_CODING noc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	2898512	2L_2898512_SNP [dm3] 2L_2898512_SNP [dm6]	A	C	2.188e^-4	0.955	INTRON lilli	TF binding site BDTNP1_TFBS_dl
X	10283532	X_10283532_SNP [dm3] X_10389499_SNP [dm6]	A	G	2.197e^-4	0.955	INTRON flw
3L	6897838	3L_6897838_SNP [dm3] 3L_6904738_SNP [dm6]	A	G	2.200e^-4	0.955	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11249633	2R_11249633_SNP [dm3] 2R_15362128_SNP [dm6]	A	G	2.201e^-4	0.955	SYNONYMOUS_CODING unc-5	TF binding site mE1_TFBS_chinmo
2R	17277035	2R_17277035_SNP [dm3] 2R_21389530_SNP [dm6]	C	T	2.209e^-4	0.955	NON_SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2L	9531535	2L_9531535_SNP [dm3] 2L_9531535_SNP [dm6]	A	T	2.217e^-4	0.955	INTRON Oatp30B
3L	18808313	3L_18808313_SNP [dm3] 3L_18815213_SNP [dm6]	A	T	2.219e^-4	0.955	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	10282368	X_10282368_SNP [dm3] X_10388335_SNP [dm6]	C	A	2.233e^-4	0.955	INTRON flw
X	20039806	X_20039806_INS [dm3] X_20145773_INS [dm6]	T	TGTAT	2.238e^-4	0.955	INTERGENIC
3R	2379689	3R_2379689_SNP [dm3] 3R_6553967_SNP [dm6]	C	T	2.244e^-4	0.955	INTRON dpr11
2L	14713374	2L_14713374_SNP [dm3] 2L_14713374_SNP [dm6]	C	G	2.245e^-4	0.955	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
2L	14713381	2L_14713381_INS [dm3] 2L_14713381_INS [dm6]	G	AAAGTTTCATTTCGGAAAGT...	2.245e^-4	0.955	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
2R	10972105	2R_10972105_SNP [dm3] 2R_15084600_SNP [dm6]	T	A	2.246e^-4	0.955	INTERGENIC
3R	11330738	3R_11330738_SNP [dm3] 3R_15505016_SNP [dm6]	A	T	2.250e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18935401	2R_18935401_SNP [dm3] 2R_23047878_SNP [dm6]	G	A	2.252e^-4	0.955	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3350142	2L_3350142_SNP [dm3] 2L_3350142_SNP [dm6]	G	A	2.267e^-4	0.958	INTRON E23
2R	14771477	2R_14771477_SNP [dm3] 2R_18883972_SNP [dm6]	G	A	2.272e^-4	0.958	INTRON sano
3R	17209174	3R_17209174_DEL [dm3] 3R_21383452_DEL [dm6]	AC	A	2.274e^-4	0.958	INTERGENIC
3L	5903633	3L_5903633_SNP [dm3] 3L_5910533_SNP [dm6]	C	T	2.281e^-4	0.958	DOWNSTREAM CG13288 INTRON CG13288
3L	3013281	3L_3013281_SNP [dm3] 3L_3013281_SNP [dm6]	A	G	2.284e^-4	0.958	INTERGENIC
3L	16134041	3L_16134041_SNP [dm3] 3L_16140941_SNP [dm6]	A	T	2.291e^-4	0.959	SYNONYMOUS_CODING CG5151 UTR_3_PRIME CG32152	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20256434	2R_20256434_SNP [dm3] 2R_24368911_SNP [dm6]	G	T	2.316e^-4	0.963	INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv
2R	19465267	2R_19465267_SNP [dm3] 2R_23577744_SNP [dm6]	C	T	2.317e^-4	0.963	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17083890	2R_17083890_SNP [dm3] 2R_21196385_SNP [dm6]	G	A	2.319e^-4	0.963	INTRON Lapsyn
X	19044435	X_19044435_DEL [dm3] X_19150402_DEL [dm6]	AA	A	2.321e^-4	0.963	INTRON RhoGAP18B
3R	25598219	3R_25598219_SNP [dm3] 3R_29772497_SNP [dm6]	A	G	2.332e^-4	0.964	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20392211	2R_20392211_SNP [dm3] 2R_24504688_SNP [dm6]	G	A	2.334e^-4	0.964	INTERGENIC
2L	3348376	2L_3348376_SNP [dm3] 2L_3348376_SNP [dm6]	G	A	2.345e^-4	0.964	INTRON E23
2R	4107775	2R_4107775_SNP [dm3] 2R_8220270_SNP [dm6]	G	A	2.352e^-4	0.964	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2740199	3L_2740199_SNP [dm3] 3L_2740199_SNP [dm6]	T	A	2.365e^-4	0.964	UTR_3_PRIME Acp62F INTRON Mrtf
2L	9413562	2L_9413562_SNP [dm3] 2L_9413562_SNP [dm6]	T	C	2.375e^-4	0.964	INTRON Shawl
3L	14061266	3L_14061266_SNP [dm3] 3L_14068166_SNP [dm6]	G	A	2.394e^-4	0.964	INTRON CG32138
3R	26077521	3R_26077521_SNP [dm3] 3R_30251799_SNP [dm6]	C	G	2.396e^-4	0.964	NON_SYNONYMOUS_CODING CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	2596472	2R_2596472_SNP [dm3] 2R_6708967_SNP [dm6]	C	A	2.398e^-4	0.964	UPSTREAM CG3409 & 1 other DOWNSTREAM CR43611 INTRON CG3409 & 1 other	TF binding site mE1_TFBS_sens
2L	21999739	2L_21999739_SNP [dm3] 2L_21999739_SNP [dm6]	T	A	2.405e^-4	0.964	EXON CR44916
2R	18061163	2R_18061163_SNP [dm3] 2R_22173658_SNP [dm6]	T	A	2.407e^-4	0.964	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
3R	20495746	3R_20495746_SNP [dm3] 3R_24670024_SNP [dm6]	A	G	2.412e^-4	0.964	INTRON slo
3L	3714713	3L_3714713_SNP [dm3] 3L_3714713_SNP [dm6]	C	G	2.421e^-4	0.964	UTR_3_PRIME CG43089 DOWNSTREAM CG32264 & 1 other
2R	19105731	2R_19105731_SNP [dm3] 2R_23218208_SNP [dm6]	C	T	2.426e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	10479383	3L_10479383_SNP [dm3] 3L_10486283_SNP [dm6]	A	T	2.435e^-4	0.964	INTRON A2bp1
2R	4113211	2R_4113211_SNP [dm3] 2R_8225706_SNP [dm6]	A	T	2.437e^-4	0.964	UTR_3_PRIME LRP1
3L	4701133	3L_4701133_SNP [dm3] 3L_4701133_SNP [dm6]	A	C	2.446e^-4	0.964	INTRON RhoGEF64C
3R	6302286	3R_6302286_SNP [dm3] 3R_10476564_SNP [dm6]	C	A	2.446e^-4	0.964	INTERGENIC
X	13932208	X_13932208_SNP [dm3] X_14038175_SNP [dm6]	A	G	2.453e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18808460	3L_18808460_SNP [dm3] 3L_18815360_SNP [dm6]	A	G	2.454e^-4	0.964	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9532931	2L_9532931_SNP [dm3] 2L_9532931_SNP [dm6]	C	A	2.455e^-4	0.964	INTRON Oatp30B
2L	4185700	2L_4185700_SNP [dm3] 2L_4185700_SNP [dm6]	G	T	2.456e^-4	0.964	DOWNSTREAM CG31961 INTRON CR44057
X	22224889	X_22224889_SNP [dm3] X_22823053_SNP [dm6]	A	T	2.464e^-4	0.964	INTERGENIC	transposable element FlyBase
2R	7001167	2R_7001167_SNP [dm3] 2R_11113662_SNP [dm6]	G	A	2.468e^-4	0.964	INTRON luna
2R	17317326	2R_17317326_INS [dm3] 2R_21429821_INS [dm6]	T	TTCAGTTAGCT...	2.470e^-4	0.964	INTRON Sdc
2L	7367682	2L_7367682_SNP [dm3] 2L_7367682_SNP [dm6]	C	G	2.476e^-4	0.964	INTRON Wnt10
2R	14881779	2R_14881779_SNP [dm3] 2R_18994274_SNP [dm6]	T	G	2.482e^-4	0.964	UPSTREAM snoRNA:abba-a INTRON tn
2L	950913	2L_950913_SNP [dm3] 2L_950913_SNP [dm6]	A	T	2.482e^-4	0.964	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	14106277	3L_14106277_SNP [dm3] 3L_14113177_SNP [dm6]	G	A	2.506e^-4	0.964	SYNONYMOUS_CODING Sox21b
3R	21814868	3R_21814868_SNP [dm3] 3R_25989146_SNP [dm6]	C	A	2.508e^-4	0.964	SYNONYMOUS_CODING Nf1
3R	16276666	3R_16276666_SNP [dm3] 3R_20450944_SNP [dm6]	T	G	2.512e^-4	0.964	INTRON Gfrl
3R	11335647	3R_11335647_SNP [dm3] 3R_15509925_SNP [dm6]	G	A	2.514e^-4	0.964	UPSTREAM CG44013 INTERGENIC
2R	19505735	2R_19505735_SNP [dm3] 2R_23618212_SNP [dm6]	A	C	2.522e^-4	0.964	INTERGENIC
3L	13277970	3L_13277970_MNP [dm3] 3L_13284870_MNP [dm6]	CAT	TCA	2.524e^-4	0.964	UPSTREAM CR43913 DOWNSTREAM CR45752 INTERGENIC
X	18982148	X_18982148_SNP [dm3] X_19088115_SNP [dm6]	C	T	2.528e^-4	0.964	INTERGENIC
3R	17309790	3R_17309790_SNP [dm3] 3R_21484068_SNP [dm6]	G	A	2.534e^-4	0.964	SYNONYMOUS_CODING CG7922
3L	15932653	3L_15932653_SNP [dm3] 3L_15939553_SNP [dm6]	T	C	2.544e^-4	0.964	INTRON Pka-C3
2R	19465125	2R_19465125_SNP [dm3] 2R_23577602_SNP [dm6]	G	A	2.544e^-4	0.964	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	4438380	3L_4438380_SNP [dm3] 3L_4438380_SNP [dm6]	C	T	2.550e^-4	0.964	DOWNSTREAM CG15021 INTERGENIC
3L	2810144	3L_2810144_SNP [dm3] 3L_2810144_SNP [dm6]	A	T	2.552e^-4	0.964	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17635578	2R_17635578_SNP [dm3] 2R_21748073_SNP [dm6]	C	T	2.553e^-4	0.964	INTERGENIC
2L	2877510	2L_2877510_SNP [dm3] 2L_2877510_SNP [dm6]	A	G	2.554e^-4	0.964	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
3L	16218358	3L_16218358_SNP [dm3] 3L_16225258_SNP [dm6]	G	A	2.556e^-4	0.964	DOWNSTREAM l_3_72Dn INTERGENIC
3L	14106199	3L_14106199_SNP [dm3] 3L_14113099_SNP [dm6]	G	A	2.557e^-4	0.964	SYNONYMOUS_CODING Sox21b
3L	6764207	3L_6764207_SNP [dm3] 3L_6771107_SNP [dm6]	G	A	2.558e^-4	0.964	INTERGENIC
3L	4172672	3L_4172672_SNP [dm3] 3L_4172672_SNP [dm6]	T	C	2.564e^-4	0.964	SYNONYMOUS_CODING Ero1L
3R	25852774	3R_25852774_SNP [dm3] 3R_30027052_SNP [dm6]	A	C	2.565e^-4	0.964	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16218278	3L_16218278_INS [dm3] 3L_16225178_INS [dm6]	T	TT	2.570e^-4	0.964	DOWNSTREAM l_3_72Dn INTERGENIC
3L	1439632	3L_1439632_SNP [dm3] 3L_1439632_SNP [dm6]	T	C	2.574e^-4	0.964	INTRON Ptp61F
3L	2118234	3L_2118234_SNP [dm3] 3L_2118234_SNP [dm6]	A	T	2.589e^-4	0.967	INTRON zormin
2L	3351083	2L_3351083_SNP [dm3] 2L_3351083_SNP [dm6]	C	A	2.606e^-4	0.968	INTRON E23
3L	6298195	3L_6298195_SNP [dm3] 3L_6305095_SNP [dm6]	G	A	2.606e^-4	0.968	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
2R	17379727	2R_17379727_SNP [dm3] 2R_21492222_SNP [dm6]	A	G	2.609e^-4	0.968	INTRON Fkbp14
2L	18580632	2L_18580632_SNP [dm3] 2L_18580632_SNP [dm6]	T	C	2.616e^-4	0.968	INTRON Pde11
2L	4155208	2L_4155208_SNP [dm3] 2L_4155208_SNP [dm6]	A	G	2.618e^-4	0.968	INTERGENIC
2L	7084889	2L_7084889_SNP [dm3] 2L_7084889_SNP [dm6]	A	G	2.626e^-4	0.968	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
X	17288696	X_17288696_SNP [dm3] X_17394663_SNP [dm6]	T	G	2.638e^-4	0.968	INTERGENIC
3L	18491555	3L_18491555_SNP [dm3] 3L_18498455_SNP [dm6]	C	A	2.645e^-4	0.968	INTRON AstC-R2
2L	2395858	2L_2395858_SNP [dm3] 2L_2395858_SNP [dm6]	G	A	2.657e^-4	0.968	INTRON VGlut
3L	16218411	3L_16218411_SNP [dm3] 3L_16225311_SNP [dm6]	A	T	2.661e^-4	0.968	DOWNSTREAM l_3_72Dn INTERGENIC
2L	21003924	2L_21003924_SNP [dm3] 2L_21003924_SNP [dm6]	G	A	2.662e^-4	0.968	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	6728379	2L_6728379_SNP [dm3] 2L_6728379_SNP [dm6]	C	T	2.663e^-4	0.968	SYNONYMOUS_CODING Liprin-alpha	TF binding site mE1_TFBS_chinmo
3R	19835230	3R_19835230_SNP [dm3] 3R_24009508_SNP [dm6]	G	A	2.664e^-4	0.968	INTRON KrT95D
3L	7474857	3L_7474857_SNP [dm3] 3L_7481757_SNP [dm6]	A	C	2.677e^-4	0.968	INTERGENIC
3R	21854385	3R_21854385_SNP [dm3] 3R_26028663_SNP [dm6]	C	T	2.681e^-4	0.968	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4081047	2L_4081047_DEL [dm3] 2L_4081047_DEL [dm6]	TATTAAAG	T	2.684e^-4	0.968	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11809805	2R_11809805_SNP [dm3] 2R_15922300_SNP [dm6]	C	T	2.691e^-4	0.968	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2883966	2L_2883966_DEL [dm3] 2L_2883966_DEL [dm6]	GCCTTTTGTGCCG...	G	2.693e^-4	0.968	UPSTREAM NTPase INTRON NTPase	TF binding site BDTNP1_TFBS_dl
X	13207491	X_13207491_SNP [dm3] X_13313458_SNP [dm6]	C	A	2.700e^-4	0.968	INTRON IP3K2
X	20718825	X_20718825_SNP [dm3] X_20847798_SNP [dm6]	T	C	2.711e^-4	0.968	INTRON shakB
3L	14093141	3L_14093141_SNP [dm3] 3L_14100041_SNP [dm6]	T	G	2.719e^-4	0.968	INTERGENIC
2R	17448705	2R_17448705_SNP [dm3] 2R_21561200_SNP [dm6]	C	T	2.731e^-4	0.968	SYNONYMOUS_CODING CG10440	TF binding site mE1_TFBS_chinmo
2R	16727918	2R_16727918_SNP [dm3] 2R_20840413_SNP [dm6]	T	A	2.733e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
2L	4269305	2L_4269305_DEL [dm3] 2L_4269305_DEL [dm6]	AT	A	2.742e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14141107	3L_14141107_SNP [dm3] 3L_14148007_SNP [dm6]	C	T	2.746e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11791390	2L_11791390_SNP [dm3] 2L_11791390_SNP [dm6]	G	A	2.747e^-4	0.968	DOWNSTREAM CG14932 INTRON Tsp33B	TF binding site mE1_TFBS_cad
2R	18922692	2R_18922692_SNP [dm3] 2R_23035169_SNP [dm6]	C	A	2.752e^-4	0.968	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	3351369	2L_3351369_SNP [dm3] 2L_3351369_SNP [dm6]	C	T	2.754e^-4	0.968	INTRON E23
3L	16218430	3L_16218430_SNP [dm3] 3L_16225330_SNP [dm6]	C	T	2.758e^-4	0.968	DOWNSTREAM l_3_72Dn INTERGENIC
X	22224836	X_22224836_SNP [dm3] X_22823000_SNP [dm6]	T	A	2.760e^-4	0.968	INTERGENIC	transposable element FlyBase
2R	13258666	2R_13258666_SNP [dm3] 2R_17371161_SNP [dm6]	G	C	2.761e^-4	0.968	SPLICE_SITE_REGION mbl INTRON mbl
X	10283397	X_10283397_SNP [dm3] X_10389364_SNP [dm6]	A	T	2.762e^-4	0.968	INTRON flw
2L	9532108	2L_9532108_SNP [dm3] 2L_9532108_SNP [dm6]	C	T	2.767e^-4	0.968	INTRON Oatp30B
2L	6728378	2L_6728378_SNP [dm3] 2L_6728378_SNP [dm6]	C	A	2.770e^-4	0.968	SYNONYMOUS_CODING Liprin-alpha	TF binding site mE1_TFBS_chinmo
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	2.772e^-4	0.968	INTRON CR44997
X	8190359	X_8190359_SNP [dm3] X_8296326_SNP [dm6]	T	C	2.780e^-4	0.969	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
2L	13950530	2L_13950530_SNP [dm3] 2L_13950530_SNP [dm6]	G	T	2.784e^-4	0.969	INTRON Ance-3
3R	14884001	3R_14884001_SNP [dm3] 3R_19058279_SNP [dm6]	T	A	2.791e^-4	0.969	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14713401	2L_14713401_SNP [dm3] 2L_14713401_SNP [dm6]	G	A	2.795e^-4	0.969	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
3R	16840364	3R_16840364_INS [dm3] 3R_21014642_INS [dm6]	A	AA	2.803e^-4	0.97	UTR_3_PRIME Calx DOWNSTREAM Calx
2L	3350114	2L_3350114_DEL [dm3] 2L_3350114_DEL [dm6]	AA	A	2.810e^-4	0.97	INTRON E23
3L	18257188	3L_18257188_SNP [dm3] 3L_18264088_SNP [dm6]	C	T	2.814e^-4	0.97	INTERGENIC
X	8190372	X_8190372_SNP [dm3] X_8296339_SNP [dm6]	G	A	2.835e^-4	0.972	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
2L	4477322	2L_4477322_SNP [dm3] 2L_4477322_SNP [dm6]	C	T	2.837e^-4	0.972	UPSTREAM ine DOWNSTREAM dp INTERGENIC
2L	3566200	2L_3566200_SNP [dm3] 2L_3566200_SNP [dm6]	C	T	2.843e^-4	0.972	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2781794	X_2781794_SNP [dm3] X_2887761_SNP [dm6]	T	A	2.845e^-4	0.972	INTRON kirre
2L	3349446	2L_3349446_SNP [dm3] 2L_3349446_SNP [dm6]	T	C	2.849e^-4	0.972	INTRON E23
2L	2877634	2L_2877634_SNP [dm3] 2L_2877634_SNP [dm6]	A	C	2.854e^-4	0.972	SYNONYMOUS_CODING Prx6005 UPSTREAM CG31950 DOWNSTREAM CG8814	TF binding site BDTNP1_TFBS_dl
X	8273486	X_8273486_SNP [dm3] X_8379453_SNP [dm6]	G	T	2.855e^-4	0.972	INTERGENIC
2R	7022329	2R_7022329_SNP [dm3] 2R_11134824_SNP [dm6]	C	T	2.864e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	12805280	X_12805280_SNP [dm3] X_12911247_SNP [dm6]	C	T	2.870e^-4	0.973	INTRON CG4645
2R	17018518	2R_17018518_SNP [dm3] 2R_21131013_SNP [dm6]	G	T	2.875e^-4	0.973	NON_SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
3L	13401620	3L_13401620_SNP [dm3] 3L_13408520_SNP [dm6]	T	A	2.882e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17456080	2R_17456080_SNP [dm3] 2R_21568575_SNP [dm6]	C	T	2.923e^-4	0.973	INTRON CG10440	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11336718	3R_11336718_SNP [dm3] 3R_15510996_SNP [dm6]	T	C	2.943e^-4	0.973	INTERGENIC
2L	13280504	2L_13280504_SNP [dm3] 2L_13280504_SNP [dm6]	G	A	2.944e^-4	0.973	SYNONYMOUS_CODING CG44085 INTRON CG44085
3R	9498571	3R_9498571_SNP [dm3] 3R_13672849_SNP [dm6]	T	C	2.945e^-4	0.973	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	21777321	3R_21777321_SNP [dm3] 3R_25951599_SNP [dm6]	T	G	2.951e^-4	0.973	INTRON CCAP-R	TF binding site mE1_TFBS_inv
2R	16949728	2R_16949728_SNP [dm3] 2R_21062223_SNP [dm6]	A	T	2.955e^-4	0.973	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16949735	2R_16949735_SNP [dm3] 2R_21062230_SNP [dm6]	C	T	2.955e^-4	0.973	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4700497	3L_4700497_SNP [dm3] 3L_4700497_SNP [dm6]	A	G	2.964e^-4	0.973	INTRON RhoGEF64C
3L	5850749	3L_5850749_SNP [dm3] 3L_5857649_SNP [dm6]	C	T	2.966e^-4	0.973	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3942267	3L_3942267_SNP [dm3] 3L_3942267_SNP [dm6]	A	G	2.967e^-4	0.973	SYNONYMOUS_CODING CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916
3R	1254212	3R_1254212_SNP [dm3] 3R_5428490_SNP [dm6]	A	G	2.972e^-4	0.973	INTRON CG14669
2R	12595120	2R_12595120_SNP [dm3] 2R_16707615_SNP [dm6]	A	C	2.982e^-4	0.973	INTRON CG30463
3L	13276371	3L_13276371_DEL [dm3] 3L_13283271_DEL [dm6]	GG	G	2.991e^-4	0.973	DOWNSTREAM CR43913 EXON CR43146
3L	14512571	3L_14512571_SNP [dm3] 3L_14519471_SNP [dm6]	A	T	2.996e^-4	0.973	DOWNSTREAM CG9592 & 1 other INTRON bbg
2R	5070581	2R_5070581_SNP [dm3] 2R_9183076_SNP [dm6]	C	T	3.006e^-4	0.973	UPSTREAM CR44284 INTRON ltd	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14801295	2L_14801295_SNP [dm3] 2L_14801295_SNP [dm6]	C	A	3.020e^-4	0.973	INTERGENIC
X	2781777	X_2781777_SNP [dm3] X_2887744_SNP [dm6]	C	A	3.021e^-4	0.973	INTRON kirre
3R	15633403	3R_15633403_DEL [dm3] 3R_19807681_DEL [dm6]	AAA	A	3.036e^-4	0.973	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	14479571	X_14479571_DEL [dm3] X_14585538_DEL [dm6]	TCT	T	3.045e^-4	0.973	UTR_3_PRIME CG9413 DOWNSTREAM nmdyn-D6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21814638	3R_21814638_SNP [dm3] 3R_25988916_SNP [dm6]	A	G	3.045e^-4	0.973	SYNONYMOUS_CODING Nf1
2R	17497413	2R_17497413_SNP [dm3] 2R_21609908_SNP [dm6]	C	G	3.051e^-4	0.973	NON_SYNONYMOUS_CODING CG15673
3L	3456981	3L_3456981_SNP [dm3] 3L_3456981_SNP [dm6]	T	A	3.055e^-4	0.973	INTRON eIF5B
X	10277752	X_10277752_SNP [dm3] X_10383719_SNP [dm6]	T	C	3.055e^-4	0.973	UTR_3_PRIME Psf3 DOWNSTREAM Psf3 & 1 other
3R	20590972	3R_20590972_SNP [dm3] 3R_24765250_SNP [dm6]	T	C	3.072e^-4	0.973	UPSTREAM AstA INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	9299688	3L_9299688_SNP [dm3] 3L_9306588_SNP [dm6]	T	C	3.075e^-4	0.973	INTERGENIC
3R	22375019	3R_22375019_SNP [dm3] 3R_26549297_SNP [dm6]	G	A	3.076e^-4	0.973	INTRON scrib
X	6195402	X_6195402_SNP [dm3] X_6301369_SNP [dm6]	C	T	3.091e^-4	0.973	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5263393	X_5263393_SNP [dm3] X_5369360_SNP [dm6]	G	T	3.094e^-4	0.973	INTRON SK
3L	2796737	3L_2796737_SNP [dm3] 3L_2796737_SNP [dm6]	A	T	3.095e^-4	0.973	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	6910070	3L_6910070_SNP [dm3] 3L_6916970_SNP [dm6]	T	A	3.096e^-4	0.973	INTERGENIC
2L	4028921	2L_4028921_SNP [dm3] 2L_4028921_SNP [dm6]	A	G	3.099e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16882579	3R_16882579_SNP [dm3] 3R_21056857_SNP [dm6]	G	T	3.100e^-4	0.973	SPLICE_SITE_REGION Mvl INTRON Mvl
2L	18616865	2L_18616865_SNP [dm3] 2L_18616865_SNP [dm6]	A	T	3.101e^-4	0.973	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15082606	2R_15082606_SNP [dm3] 2R_19195101_SNP [dm6]	G	A	3.103e^-4	0.973	INTRON hppy
2L	827240	2L_827240_SNP [dm3] 2L_827240_SNP [dm6]	C	T	3.105e^-4	0.973	INTRON dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10479337	3L_10479337_SNP [dm3] 3L_10486237_SNP [dm6]	T	A	3.109e^-4	0.973	INTRON A2bp1
3L	7758264	3L_7758264_SNP [dm3] 3L_7765164_SNP [dm6]	C	T	3.117e^-4	0.973	SYNONYMOUS_CODING Clk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9375981	2R_9375981_SNP [dm3] 2R_13488476_SNP [dm6]	G	T	3.118e^-4	0.973	INTRON bbc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14717220	3R_14717220_SNP [dm3] 3R_18891498_SNP [dm6]	G	T	3.131e^-4	0.973	INTERGENIC
3L	11534105	3L_11534105_SNP [dm3] 3L_11541005_SNP [dm6]	C	T	3.139e^-4	0.973	INTRON Mob2
2L	4080955	2L_4080955_SNP [dm3] 2L_4080955_SNP [dm6]	A	G	3.140e^-4	0.973	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18212422	X_18212422_SNP [dm3] X_18318389_SNP [dm6]	G	A	3.156e^-4	0.973	INTRON CG6023
3L	9403090	3L_9403090_SNP [dm3] 3L_9409990_SNP [dm6]	T	G	3.161e^-4	0.973	UTR_5_PRIME CG4022	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	14167925	2R_14167925_SNP [dm3] 2R_18280420_SNP [dm6]	G	C	3.163e^-4	0.973	NON_SYNONYMOUS_CODING sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9541288	2L_9541288_SNP [dm3] 2L_9541288_SNP [dm6]	C	T	3.163e^-4	0.973	INTRON CG17855
2L	3350489	2L_3350489_SNP [dm3] 2L_3350489_SNP [dm6]	C	T	3.170e^-4	0.973	INTRON E23
2L	3411270	2L_3411270_SNP [dm3] 2L_3411270_SNP [dm6]	C	A	3.177e^-4	0.973	DOWNSTREAM CG8840 INTRON pgant2
3L	2796777	3L_2796777_SNP [dm3] 3L_2796777_SNP [dm6]	A	C	3.185e^-4	0.973	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	6976998	2L_6976998_SNP [dm3] 2L_6976998_SNP [dm6]	C	T	3.190e^-4	0.973	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	3800282	2L_3800282_SNP [dm3] 2L_3800282_SNP [dm6]	C	T	3.193e^-4	0.973	SPLICE_SITE_REGION CG3921 INTRON CG3921
2L	16468504	2L_16468504_SNP [dm3] 2L_16468504_SNP [dm6]	G	A	3.205e^-4	0.973	SYNONYMOUS_CODING dac
2L	6286399	2L_6286399_SNP [dm3] 2L_6286399_SNP [dm6]	G	A	3.214e^-4	0.973	INTRON Ddr
3L	3593934	3L_3593934_SNP [dm3] 3L_3593934_SNP [dm6]	T	A	3.214e^-4	0.973	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16214689	3L_16214689_SNP [dm3] 3L_16221589_SNP [dm6]	G	A	3.224e^-4	0.973	UPSTREAM tRNA:CR32153 INTERGENIC
3L	4341217	3L_4341217_DEL [dm3] 3L_4341217_DEL [dm6]	AGG	TT	3.224e^-4	0.973	INTRON Cip4
2R	7322189	2R_7322189_SNP [dm3] 2R_11434684_SNP [dm6]	A	G	3.224e^-4	0.973	INTERGENIC
3L	8467835	3L_8467835_SNP [dm3] 3L_8474735_SNP [dm6]	A	G	3.230e^-4	0.973	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8466142	3L_8466142_SNP [dm3] 3L_8473042_SNP [dm6]	A	T	3.232e^-4	0.973	NON_SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad
3L	19062098	3L_19062098_SNP [dm3] 3L_19068998_SNP [dm6]	T	C	3.238e^-4	0.973	NON_SYNONYMOUS_CODING Mkp3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9304904	3L_9304904_SNP [dm3] 3L_9311804_SNP [dm6]	G	A	3.257e^-4	0.973	INTERGENIC
2L	3566047	2L_3566047_SNP [dm3] 2L_3566047_SNP [dm6]	C	A	3.257e^-4	0.973	INTERGENIC
3L	9322277	3L_9322277_SNP [dm3] 3L_9329177_SNP [dm6]	T	A	3.264e^-4	0.973	INTERGENIC
3L	4649766	3L_4649766_SNP [dm3] 3L_4649766_SNP [dm6]	A	G	3.268e^-4	0.973	SYNONYMOUS_CODING CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
X	5653372	X_5653372_INS [dm3] X_5759339_INS [dm6]	C	AAA	3.281e^-4	0.973	UTR_3_PRIME CG15771 DOWNSTREAM MAPk-Ak2	TF binding site mE1_TFBS_HSA
2L	4081046	2L_4081046_SNP [dm3] 2L_4081046_SNP [dm6]	C	T	3.283e^-4	0.973	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6670683	2L_6670683_SNP [dm3] 2L_6670683_SNP [dm6]	G	A	3.284e^-4	0.973	DOWNSTREAM Spn27A INTRON cup & 1 other
3R	19054437	3R_19054437_SNP [dm3] 3R_23228715_SNP [dm6]	C	T	3.288e^-4	0.973	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	21039026	2L_21039026_SNP [dm3] 2L_21039026_SNP [dm6]	C	T	3.290e^-4	0.973	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17209279	3R_17209279_SNP [dm3] 3R_21383557_SNP [dm6]	C	G	3.290e^-4	0.973	INTERGENIC
3R	9379036	3R_9379036_SNP [dm3] 3R_13553314_SNP [dm6]	G	C	3.291e^-4	0.973	INTERGENIC
3L	13276375	3L_13276375_SNP [dm3] 3L_13283275_SNP [dm6]	T	A	3.295e^-4	0.973	DOWNSTREAM CR43913 EXON CR43146
2R	14085279	2R_14085279_SNP [dm3] 2R_18197774_SNP [dm6]	G	A	3.304e^-4	0.973	INTERGENIC
2L	831578	2L_831578_SNP [dm3] 2L_831578_SNP [dm6]	C	T	3.307e^-4	0.973	SYNONYMOUS_CODING dock	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7959579	2R_7959579_SNP [dm3] 2R_12072074_SNP [dm6]	A	G	3.311e^-4	0.973	INTRON CG8888
2L	9946781	2L_9946781_SNP [dm3] 2L_9946781_SNP [dm6]	G	A	3.320e^-4	0.973	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9541654	2L_9541654_SNP [dm3] 2L_9541654_SNP [dm6]	A	G	3.323e^-4	0.973	SYNONYMOUS_CODING CG17855
2R	17557477	2R_17557477_SNP [dm3] 2R_21669972_SNP [dm6]	G	A	3.330e^-4	0.973	UPSTREAM NC2alpha & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2789555	3L_2789555_SNP [dm3] 3L_2789555_SNP [dm6]	T	C	3.333e^-4	0.973	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3594040	3L_3594040_INS [dm3] 3L_3594040_INS [dm6]	T	TCATTATGCCATTT...	3.338e^-4	0.973	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11344268	3R_11344268_SNP [dm3] 3R_15518546_SNP [dm6]	T	G	3.350e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18808485	3L_18808485_SNP [dm3] 3L_18815385_SNP [dm6]	T	C	3.353e^-4	0.973	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14342030	3L_14342030_SNP [dm3] 3L_14348930_SNP [dm6]	T	G	3.371e^-4	0.973	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2740197	3L_2740197_SNP [dm3] 3L_2740197_SNP [dm6]	T	A	3.382e^-4	0.973	UTR_3_PRIME Acp62F INTRON Mrtf
3R	19054436	3R_19054436_SNP [dm3] 3R_23228714_SNP [dm6]	T	C	3.383e^-4	0.973	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18909284	2R_18909284_DEL [dm3] 2R_23021761_DEL [dm6]	AAGCTGA	A	3.391e^-4	0.973	INTRON twi & 1 other
3R	21777459	3R_21777459_SNP [dm3] 3R_25951737_SNP [dm6]	G	A	3.391e^-4	0.973	INTRON CCAP-R
3L	8469460	3L_8469460_SNP [dm3] 3L_8476360_SNP [dm6]	C	T	3.396e^-4	0.973	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4709569	2L_4709569_SNP [dm3] 2L_4709569_SNP [dm6]	A	G	3.400e^-4	0.973	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17456079	2R_17456079_SNP [dm3] 2R_21568574_SNP [dm6]	T	G	3.401e^-4	0.973	INTRON CG10440	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20797260	X_20797260_SNP [dm3] X_20926233_SNP [dm6]	C	T	3.402e^-4	0.973	INTRON shakB	TF binding site BDTNP1_TFBS_dl
2R	17443111	2R_17443111_SNP [dm3] 2R_21555606_SNP [dm6]	C	T	3.403e^-4	0.973	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9442495	2R_9442495_SNP [dm3] 2R_13554990_SNP [dm6]	T	G	3.421e^-4	0.973	UPSTREAM link INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	9475113	2L_9475113_SNP [dm3] 2L_9475113_SNP [dm6]	G	A	3.431e^-4	0.973	INTERGENIC
3L	18808579	3L_18808579_SNP [dm3] 3L_18815479_SNP [dm6]	A	G	3.441e^-4	0.973	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2575001	3L_2575001_SNP [dm3] 3L_2575001_SNP [dm6]	G	C	3.445e^-4	0.973	INTRON msn
3L	10399602	3L_10399602_SNP [dm3] 3L_10406502_SNP [dm6]	C	T	3.446e^-4	0.973	INTERGENIC
3L	2777593	3L_2777593_SNP [dm3] 3L_2777593_SNP [dm6]	C	A	3.455e^-4	0.973	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8376628	2L_8376628_INS [dm3] 2L_8376628_INS [dm6]	A	ATA	3.475e^-4	0.973	SPLICE_SITE_DONOR CG13390 UPSTREAM CG17294 INTRON CG13390	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17371345	2R_17371345_SNP [dm3] 2R_21483840_SNP [dm6]	G	T	3.476e^-4	0.973	NON_SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25603087	3R_25603087_SNP [dm3] 3R_29777365_SNP [dm6]	G	T	3.482e^-4	0.973	INTRON kay	TF binding site BDTNP1_TFBS_z
2R	20208686	2R_20208686_SNP [dm3] 2R_24321163_SNP [dm6]	G	A	3.483e^-4	0.973	INTERGENIC
3R	21827056	3R_21827056_SNP [dm3] 3R_26001334_SNP [dm6]	A	C	3.485e^-4	0.973	DOWNSTREAM E_spl_mgamma-HLH EXON CR45037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25598293	3R_25598293_DEL [dm3] 3R_29772571_DEL [dm6]	TATTAG	C	3.487e^-4	0.973	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9322355	3L_9322355_SNP [dm3] 3L_9329255_SNP [dm6]	G	C	3.489e^-4	0.973	INTERGENIC
3L	14524334	3L_14524334_SNP [dm3] 3L_14531234_SNP [dm6]	T	C	3.493e^-4	0.973	INTRON bbg
3L	15932610	3L_15932610_SNP [dm3] 3L_15939510_SNP [dm6]	C	T	3.494e^-4	0.973	INTRON Pka-C3
X	20678380	X_20678380_SNP [dm3] X_20807353_SNP [dm6]	C	A	3.495e^-4	0.973	INTRON shakB
X	13719487	X_13719487_SNP [dm3] X_13825454_SNP [dm6]	A	G	3.497e^-4	0.973	SYNONYMOUS_CODING Nup93-1 DOWNSTREAM jub	TF binding site mE1_TFBS_sens
3L	2777501	3L_2777501_SNP [dm3] 3L_2777501_SNP [dm6]	G	A	3.514e^-4	0.973	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2777539	3L_2777539_SNP [dm3] 3L_2777539_SNP [dm6]	G	C	3.514e^-4	0.973	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13305819	2R_13305819_SNP [dm3] 2R_17418314_SNP [dm6]	G	A	3.520e^-4	0.973	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3593923	3L_3593923_DEL [dm3] 3L_3593923_DEL [dm6]	TT	T	3.525e^-4	0.973	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14939826	2R_14939826_SNP [dm3] 2R_19052321_SNP [dm6]	A	G	3.540e^-4	0.973	INTERGENIC
2R	20045795	2R_20045795_SNP [dm3] 2R_24158272_SNP [dm6]	A	C	3.540e^-4	0.973	UTR_5_PRIME CG42568 UTR_3_PRIME DnaJ-60 DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4774276	2R_4774276_SNP [dm3] 2R_8886771_SNP [dm6]	A	T	3.547e^-4	0.973	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad
2R	6227808	2R_6227808_SNP [dm3] 2R_10340303_SNP [dm6]	T	C	3.561e^-4	0.973	INTRON CG42732
2L	21116378	2L_21116378_SNP [dm3] 2L_21116378_SNP [dm6]	G	A	3.561e^-4	0.973	NON_SYNONYMOUS_CODING Nhe2	TF binding site BDTNP1_TFBS_twi
3L	7942988	3L_7942988_SNP [dm3] 3L_7949888_SNP [dm6]	A	C	3.566e^-4	0.973	INTRON exex
3R	23365700	3R_23365700_SNP [dm3] 3R_27539978_SNP [dm6]	C	G	3.569e^-4	0.973	DOWNSTREAM CR44288 INTERGENIC
2L	4032400	2L_4032400_SNP [dm3] 2L_4032400_SNP [dm6]	A	C	3.572e^-4	0.973	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10622706	3R_10622706_SNP [dm3] 3R_14796984_SNP [dm6]	A	C	3.572e^-4	0.973	SYNONYMOUS_CODING CG14855
2R	12597749	2R_12597749_SNP [dm3] 2R_16710244_SNP [dm6]	A	G	3.574e^-4	0.973	INTRON CG30463
X	4874167	X_4874167_SNP [dm3] X_4980134_SNP [dm6]	G	C	3.574e^-4	0.973	INTRON CR44833
2R	2857117	2R_2857117_SNP [dm3] 2R_6969612_SNP [dm6]	T	G	3.579e^-4	0.973	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_da
2R	17220214	2R_17220214_SNP [dm3] 2R_21332709_SNP [dm6]	C	T	3.596e^-4	0.973	SYNONYMOUS_CODING dom	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16008435	3L_16008435_INS [dm3] 3L_16015335_INS [dm6]	T	TCT	3.597e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	17559168	2L_17559168_SNP [dm3] 2L_17559168_SNP [dm6]	T	G	3.602e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6362168	2L_6362168_SNP [dm3] 2L_6362168_SNP [dm6]	T	C	3.607e^-4	0.973	DOWNSTREAM CR44778 INTERGENIC
2R	13901541	2R_13901541_SNP [dm3] 2R_18014036_SNP [dm6]	G	C	3.614e^-4	0.973	INTERGENIC
X	8638369	X_8638369_DEL [dm3] X_8744336_DEL [dm6]	CTTTAAGCGCTTTAAGCCGT...	TTTGGCAT	3.619e^-4	0.973	INTERGENIC
2L	21014734	2L_21014734_SNP [dm3] 2L_21014734_SNP [dm6]	T	C	3.619e^-4	0.973	INTRON CG42238
3L	9402701	3L_9402701_SNP [dm3] 3L_9409601_SNP [dm6]	G	A	3.620e^-4	0.973	SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl
3L	3323328	3L_3323328_SNP [dm3] 3L_3323328_SNP [dm6]	A	G	3.621e^-4	0.973	SYNONYMOUS_CODING CG11526 DOWNSTREAM CG12016 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20103072	3L_20103072_SNP [dm3] 3L_20109972_SNP [dm6]	C	G	3.630e^-4	0.973	INTRON Ir76b
3L	16126590	3L_16126590_SNP [dm3] 3L_16133490_SNP [dm6]	C	T	3.633e^-4	0.973	NON_SYNONYMOUS_CODING CG16838	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	2857118	2R_2857118_SNP [dm3] 2R_6969613_SNP [dm6]	T	C	3.635e^-4	0.973	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_da
3R	17347335	3R_17347335_SNP [dm3] 3R_21521613_SNP [dm6]	T	A	3.636e^-4	0.973	INTRON CG7956	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	3422309	3L_3422309_SNP [dm3] 3L_3422309_SNP [dm6]	T	G	3.640e^-4	0.973	INTRON sty
2L	9541696	2L_9541696_SNP [dm3] 2L_9541696_SNP [dm6]	T	C	3.645e^-4	0.973	SYNONYMOUS_CODING CG17855
3R	16869341	3R_16869341_SNP [dm3] 3R_21043619_SNP [dm6]	G	A	3.652e^-4	0.973	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	16869363	3R_16869363_SNP [dm3] 3R_21043641_SNP [dm6]	G	A	3.652e^-4	0.973	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	21026196	2L_21026196_SNP [dm3] 2L_21026196_SNP [dm6]	C	G	3.660e^-4	0.973	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7302305	2L_7302305_SNP [dm3] 2L_7302305_SNP [dm6]	C	A	3.662e^-4	0.973	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	4525812	2L_4525812_SNP [dm3] 2L_4525812_SNP [dm6]	A	G	3.663e^-4	0.973	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
3L	7474550	3L_7474550_SNP [dm3] 3L_7481450_SNP [dm6]	G	A	3.663e^-4	0.973	INTERGENIC
2R	13308930	2R_13308930_SNP [dm3] 2R_17421425_SNP [dm6]	G	C	3.667e^-4	0.973	UTR_5_PRIME l_2_k01209 INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	5883447	3L_5883447_SNP [dm3] 3L_5890347_SNP [dm6]	T	A	3.670e^-4	0.973	INTERGENIC
2L	1377765	2L_1377765_SNP [dm3] 2L_1377765_SNP [dm6]	T	G	3.672e^-4	0.973	INTERGENIC
3R	22357185	3R_22357185_SNP [dm3] 3R_26531463_SNP [dm6]	A	G	3.678e^-4	0.973	INTRON plum
3R	21774304	3R_21774304_SNP [dm3] 3R_25948582_SNP [dm6]	A	T	3.683e^-4	0.973	INTRON CCAP-R
3L	18808079	3L_18808079_SNP [dm3] 3L_18814979_SNP [dm6]	C	T	3.695e^-4	0.973	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11125651	3R_11125651_DEL [dm3] 3R_15299929_DEL [dm6]	TT	T	3.706e^-4	0.973	INTRON Tm1
2R	17277078	2R_17277078_SNP [dm3] 2R_21389573_SNP [dm6]	C	T	3.714e^-4	0.973	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2L	4269308	2L_4269308_SNP [dm3] 2L_4269308_SNP [dm6]	T	G	3.718e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17170593	2R_17170593_SNP [dm3] 2R_21283088_SNP [dm6]	T	C	3.723e^-4	0.973	NON_SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10279096	X_10279096_SNP [dm3] X_10385063_SNP [dm6]	C	A	3.725e^-4	0.973	START_GAINED Psf3 UTR_5_PRIME Psf3 UPSTREAM flw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18040075	3L_18040075_INS [dm3] 3L_18046975_INS [dm6]	A	AA	3.730e^-4	0.973	INTRON Eip75B
X	7498869	X_7498869_SNP [dm3] X_7604836_SNP [dm6]	G	T	3.731e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9360413	2R_9360413_SNP [dm3] 2R_13472908_SNP [dm6]	A	C	3.736e^-4	0.973	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18519414	3L_18519414_SNP [dm3] 3L_18526314_SNP [dm6]	A	C	3.739e^-4	0.973	UPSTREAM CG32198 INTERGENIC	TF binding site mE1_TFBS_run
2L	20043779	2L_20043779_SNP [dm3] 2L_20043779_SNP [dm6]	A	G	3.744e^-4	0.973	INTRON sNPF
3L	7475800	3L_7475800_SNP [dm3] 3L_7482700_SNP [dm6]	G	C	3.746e^-4	0.973	INTERGENIC
3R	11335203	3R_11335203_SNP [dm3] 3R_15509481_SNP [dm6]	A	T	3.763e^-4	0.973	NON_SYNONYMOUS_CODING CG44013 UPSTREAM CG44014
3L	11223911	3L_11223911_SNP [dm3] 3L_11230811_SNP [dm6]	C	T	3.764e^-4	0.973	DOWNSTREAM CR45405 & 1 other INTERGENIC
2R	14441856	2R_14441856_SNP [dm3] 2R_18554351_SNP [dm6]	A	G	3.767e^-4	0.973	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15555496	2R_15555496_SNP [dm3] 2R_19667991_SNP [dm6]	T	C	3.769e^-4	0.973	SYNONYMOUS_CODING hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5168537	3L_5168537_SNP [dm3] 3L_5175437_SNP [dm6]	A	T	3.771e^-4	0.973	INTRON shep
3L	3732597	3L_3732597_SNP [dm3] 3L_3732597_SNP [dm6]	T	C	3.775e^-4	0.973	INTRON CG32264
3L	16213854	3L_16213854_SNP [dm3] 3L_16220754_SNP [dm6]	G	C	3.777e^-4	0.973	INTERGENIC
2L	15474489	2L_15474489_SNP [dm3] 2L_15474489_SNP [dm6]	T	C	3.792e^-4	0.973	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3002762	3L_3002762_SNP [dm3] 3L_3002762_SNP [dm6]	T	A	3.797e^-4	0.973	UPSTREAM FMRFaR INTRON FMRFaR
2R	17241041	2R_17241041_SNP [dm3] 2R_21353536_SNP [dm6]	C	T	3.798e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16213844	3L_16213844_SNP [dm3] 3L_16220744_SNP [dm6]	A	C	3.804e^-4	0.973	INTERGENIC
3L	16213852	3L_16213852_SNP [dm3] 3L_16220752_SNP [dm6]	C	G	3.804e^-4	0.973	INTERGENIC
2L	830093	2L_830093_SNP [dm3] 2L_830093_SNP [dm6]	C	T	3.806e^-4	0.973	INTRON dock	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26091287	3R_26091287_SNP [dm3] 3R_30265565_SNP [dm6]	A	G	3.825e^-4	0.973	INTERGENIC
X	20833577	X_20833577_SNP [dm3] X_20962550_SNP [dm6]	T	C	3.829e^-4	0.973	DOWNSTREAM Ser6 INTERGENIC
X	12377023	X_12377023_SNP [dm3] X_12482990_SNP [dm6]	G	A	3.835e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14524337	3L_14524337_SNP [dm3] 3L_14531237_SNP [dm6]	G	T	3.837e^-4	0.973	INTRON bbg
2L	3349455	2L_3349455_SNP [dm3] 2L_3349455_SNP [dm6]	G	A	3.841e^-4	0.973	INTRON E23
2R	19527069	2R_19527069_SNP [dm3] 2R_23639546_SNP [dm6]	A	G	3.848e^-4	0.973	UPSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16868404	3R_16868404_SNP [dm3] 3R_21042682_SNP [dm6]	C	A	3.849e^-4	0.973	UPSTREAM Dhc93AB INTERGENIC
2R	5107828	2R_5107828_SNP [dm3] 2R_9220323_SNP [dm6]	T	A	3.852e^-4	0.973	INTERGENIC
2R	12025748	2R_12025748_SNP [dm3] 2R_16138243_SNP [dm6]	T	A	3.856e^-4	0.973	UPSTREAM Got1 DOWNSTREAM spin INTERGENIC
3R	11855967	3R_11855967_SNP [dm3] 3R_16030245_SNP [dm6]	A	T	3.861e^-4	0.973	INTRON pnr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1495508	2L_1495508_SNP [dm3] 2L_1495508_SNP [dm6]	C	T	3.863e^-4	0.973	UTR_5_PRIME CG31926 UPSTREAM CG31926 DOWNSTREAM CG33128
3L	18257171	3L_18257171_SNP [dm3] 3L_18264071_SNP [dm6]	A	T	3.866e^-4	0.973	INTERGENIC
X	7500144	X_7500144_SNP [dm3] X_7606111_SNP [dm6]	A	T	3.868e^-4	0.973	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	14699820	2L_14699820_SNP [dm3] 2L_14699820_SNP [dm6]	G	A	3.870e^-4	0.973	INTERGENIC
3L	2559839	3L_2559839_SNP [dm3] 3L_2559839_SNP [dm6]	G	T	3.871e^-4	0.973	INTRON msn
3R	10622620	3R_10622620_SNP [dm3] 3R_14796898_SNP [dm6]	A	G	3.872e^-4	0.973	INTRON CG14855	TF binding site mE1_TFBS_sens
3L	2113886	3L_2113886_SNP [dm3] 3L_2113886_SNP [dm6]	G	A	3.890e^-4	0.975	INTRON sls
2L	5013746	2L_5013746_SNP [dm3] 2L_5013746_SNP [dm6]	C	G	3.893e^-4	0.975	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12632700	2R_12632700_SNP [dm3] 2R_16745195_SNP [dm6]	C	A	3.894e^-4	0.975	UPSTREAM Sfp53D DOWNSTREAM CG15617 INTERGENIC
3R	18488712	3R_18488712_SNP [dm3] 3R_22662990_SNP [dm6]	A	G	3.908e^-4	0.977	INTRON CG45058
2R	13956129	2R_13956129_SNP [dm3] 2R_18068624_SNP [dm6]	C	T	3.914e^-4	0.978	INTRON CG34386
3L	2778433	3L_2778433_SNP [dm3] 3L_2778433_SNP [dm6]	A	G	3.926e^-4	0.979	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1084559	3L_1084559_SNP [dm3] 3L_1084559_SNP [dm6]	T	A	3.937e^-4	0.98	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9540982	2L_9540982_SNP [dm3] 2L_9540982_SNP [dm6]	T	C	3.941e^-4	0.98	SYNONYMOUS_CODING CG17855 DOWNSTREAM Oatp30B
2R	13308122	2R_13308122_SNP [dm3] 2R_17420617_SNP [dm6]	A	G	3.954e^-4	0.982	UTR_5_PRIME l_2_k01209 UPSTREAM cnk & 1 other INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3649125	2L_3649125_SNP [dm3] 2L_3649125_SNP [dm6]	T	C	3.971e^-4	0.984	INTRON for
X	6899942	X_6899942_SNP [dm3] X_7005909_SNP [dm6]	T	C	3.982e^-4	0.984	INTRON Inx7
3L	6126930	3L_6126930_SNP [dm3] 3L_6133830_SNP [dm6]	A	G	3.987e^-4	0.984	UPSTREAM Lcp65Ag2 DOWNSTREAM Lcp65Ag1 INTERGENIC
X	12070380	X_12070380_SNP [dm3] X_12176347_SNP [dm6]	A	T	3.991e^-4	0.984	DOWNSTREAM CG1924 INTRON Ten-a
3L	3737001	3L_3737001_SNP [dm3] 3L_3737001_SNP [dm6]	C	T	4.000e^-4	0.984	INTRON CG32264
3L	12513355	3L_12513355_SNP [dm3] 3L_12520255_SNP [dm6]	G	T	4.000e^-4	0.984	UTR_3_PRIME tral DOWNSTREAM tral & 1 other
3R	21738158	3R_21738158_SNP [dm3] 3R_25912436_SNP [dm6]	C	T	4.003e^-4	0.984	NON_SYNONYMOUS_CODING CG42235 INTRON CG42235
2R	19369219	2R_19369219_SNP [dm3] 2R_23481696_SNP [dm6]	C	T	4.004e^-4	0.984	INTRON CG43795
X	21364533	X_21364533_SNP [dm3] X_21493506_SNP [dm6]	T	A	4.029e^-4	0.984	INTERGENIC
2R	4740849	2R_4740849_SNP [dm3] 2R_8853344_SNP [dm6]	T	G	4.031e^-4	0.984	UTR_3_PRIME sns	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14080700	2L_14080700_SNP [dm3] 2L_14080700_SNP [dm6]	T	C	4.032e^-4	0.984	SYNONYMOUS_CODING nAChRalpha5
2L	4081066	2L_4081066_SNP [dm3] 2L_4081066_SNP [dm6]	C	A	4.034e^-4	0.984	INTRON ed	TF binding site BDTNP1_TFBS_dl
3L	24198722	3L_24198722_SNP [dm3] 3L_24205622_SNP [dm6]	C	T	4.039e^-4	0.984	INTRON Snap25
3L	6909744	3L_6909744_SNP [dm3] 3L_6916644_SNP [dm6]	G	A	4.040e^-4	0.984	INTERGENIC
3R	7271315	3R_7271315_SNP [dm3] 3R_11445593_SNP [dm6]	A	C	4.058e^-4	0.984	INTRON CG17230 & 1 other
3L	3873407	3L_3873407_SNP [dm3] 3L_3873407_SNP [dm6]	G	C	4.066e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11331483	3R_11331483_SNP [dm3] 3R_15505761_SNP [dm6]	C	A	4.066e^-4	0.984	INTERGENIC
2L	6728519	2L_6728519_SNP [dm3] 2L_6728519_SNP [dm6]	T	C	4.069e^-4	0.984	SYNONYMOUS_CODING Liprin-alpha	TF binding site mE1_TFBS_chinmo
X	11338935	X_11338935_SNP [dm3] X_11444902_SNP [dm6]	G	T	4.075e^-4	0.984	NON_SYNONYMOUS_CODING Sk1 INTRON Evi5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3594118	3L_3594118_SNP [dm3] 3L_3594118_SNP [dm6]	G	C	4.081e^-4	0.984	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15524378	3L_15524378_SNP [dm3] 3L_15531278_SNP [dm6]	A	T	4.085e^-4	0.984	UPSTREAM CG43248 INTRON CG43248	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2459915	3L_2459915_SNP [dm3] 3L_2459915_SNP [dm6]	A	T	4.094e^-4	0.984	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
3L	2791139	3L_2791139_SNP [dm3] 3L_2791139_SNP [dm6]	G	A	4.096e^-4	0.984	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7001092	2R_7001092_SNP [dm3] 2R_11113587_SNP [dm6]	G	C	4.098e^-4	0.984	INTRON luna
2R	8483722	2R_8483722_SNP [dm3] 2R_12596217_SNP [dm6]	A	T	4.098e^-4	0.984	UPSTREAM CR43909 INTRON Amph
X	13207492	X_13207492_SNP [dm3] X_13313459_SNP [dm6]	A	G	4.102e^-4	0.984	INTRON IP3K2
2L	9541291	2L_9541291_SNP [dm3] 2L_9541291_SNP [dm6]	G	A	4.108e^-4	0.984	INTRON CG17855
2L	14705047	2L_14705047_SNP [dm3] 2L_14705047_SNP [dm6]	G	A	4.108e^-4	0.984	INTERGENIC
3L	22088390	3L_22088390_SNP [dm3] 3L_22095290_SNP [dm6]	G	A	4.122e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2738051	3L_2738051_SNP [dm3] 3L_2738051_SNP [dm6]	G	T	4.124e^-4	0.985	INTRON Mrtf
3L	1391284	3L_1391284_SNP [dm3] 3L_1391284_SNP [dm6]	A	C	4.138e^-4	0.987	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13719484	X_13719484_SNP [dm3] X_13825451_SNP [dm6]	T	C	4.148e^-4	0.987	SYNONYMOUS_CODING Nup93-1 DOWNSTREAM jub	TF binding site mE1_TFBS_sens
3R	11335054	3R_11335054_SNP [dm3] 3R_15509332_SNP [dm6]	C	T	4.148e^-4	0.987	SYNONYMOUS_CODING CG44013 UPSTREAM CG44014
3L	4079415	3L_4079415_SNP [dm3] 3L_4079415_SNP [dm6]	C	G	4.169e^-4	0.989	SYNONYMOUS_CODING Gad1
3L	13882409	3L_13882409_SNP [dm3] 3L_13889309_SNP [dm6]	T	C	4.175e^-4	0.989	INTRON dysc
2L	14713379	2L_14713379_SNP [dm3] 2L_14713379_SNP [dm6]	T	C	4.180e^-4	0.989	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
3R	26057239	3R_26057239_SNP [dm3] 3R_30231517_SNP [dm6]	G	A	4.182e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	15415663	X_15415663_SNP [dm3] X_15521630_SNP [dm6]	G	T	4.183e^-4	0.989	INTRON Ac13E
3L	9320946	3L_9320946_SNP [dm3] 3L_9327846_SNP [dm6]	A	G	4.193e^-4	0.99	INTERGENIC
3L	17773440	3L_17773440_SNP [dm3] 3L_17780340_SNP [dm6]	C	A	4.220e^-4	0.993	INTERGENIC
3L	17773443	3L_17773443_SNP [dm3] 3L_17780343_SNP [dm6]	T	A	4.220e^-4	0.993	INTERGENIC
X	9592112	X_9592112_SNP [dm3] X_9698079_SNP [dm6]	C	T	4.220e^-4	0.993	DOWNSTREAM btd INTERGENIC
3R	13463483	3R_13463483_SNP [dm3] 3R_17637761_SNP [dm6]	G	A	4.236e^-4	0.996	INTRON CG43175
2R	12497748	2R_12497748_SNP [dm3] 2R_16610243_SNP [dm6]	C	T	4.254e^-4	0.998	INTRON CG5065
X	2515656	X_2515656_SNP [dm3] X_2621623_SNP [dm6]	C	T	4.264e^-4	0.998	SYNONYMOUS_CODING Seipin DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo
2R	18909543	2R_18909543_SNP [dm3] 2R_23022020_SNP [dm6]	G	A	4.280e^-4	0.998	INTRON twi & 1 other
2R	18576966	2R_18576966_SNP [dm3] 2R_22689461_SNP [dm6]	C	A	4.282e^-4	0.998	UPSTREAM CR44763 & 1 other DOWNSTREAM CR44762 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17940472	3R_17940472_SNP [dm3] 3R_22114750_SNP [dm6]	A	C	4.284e^-4	0.998	NON_SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3R	21814641	3R_21814641_SNP [dm3] 3R_25988919_SNP [dm6]	A	G	4.285e^-4	0.998	SYNONYMOUS_CODING Nf1
3L	7475791	3L_7475791_SNP [dm3] 3L_7482691_SNP [dm6]	T	G	4.286e^-4	0.998	INTERGENIC
2R	16949737	2R_16949737_SNP [dm3] 2R_21062232_SNP [dm6]	A	G	4.303e^-4	0.998	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9005678	3L_9005678_SNP [dm3] 3L_9012578_SNP [dm6]	G	T	4.305e^-4	0.998	DOWNSTREAM Doc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14388912	2R_14388912_SNP [dm3] 2R_18501407_SNP [dm6]	T	C	4.328e^-4	0.998	INTERGENIC
3L	2740411	3L_2740411_SNP [dm3] 3L_2740411_SNP [dm6]	G	A	4.328e^-4	0.998	DOWNSTREAM Acp62F INTRON Mrtf
2R	7322196	2R_7322196_SNP [dm3] 2R_11434691_SNP [dm6]	C	T	4.335e^-4	0.998	INTERGENIC
3R	16400115	3R_16400115_SNP [dm3] 3R_20574393_SNP [dm6]	A	T	4.338e^-4	0.998	UPSTREAM snoRNA:Psi18S-301 DOWNSTREAM TFAM INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Trl
X	16021640	X_16021640_SNP [dm3] X_16127607_SNP [dm6]	G	A	4.340e^-4	0.998	INTRON disco-r
3L	14100967	3L_14100967_SNP [dm3] 3L_14107867_SNP [dm6]	G	T	4.343e^-4	0.998	UTR_5_PRIME Sox21a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	4435708	2L_4435708_SNP [dm3] 2L_4435708_SNP [dm6]	G	A	4.346e^-4	0.998	DOWNSTREAM CG34177 & 1 other INTRON CG15431
3L	14059666	3L_14059666_SNP [dm3] 3L_14066566_SNP [dm6]	T	G	4.347e^-4	0.998	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3L	2264719	3L_2264719_SNP [dm3] 3L_2264719_SNP [dm6]	C	T	4.350e^-4	0.998	SYNONYMOUS_CODING ecd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6972771	2R_6972771_SNP [dm3] 2R_11085266_SNP [dm6]	G	T	4.350e^-4	0.998	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19604379	3R_19604379_SNP [dm3] 3R_23778657_SNP [dm6]	T	C	4.368e^-4	0.998	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_sens
3R	11335942	3R_11335942_SNP [dm3] 3R_15510220_SNP [dm6]	C	T	4.372e^-4	0.998	UPSTREAM CG44013 INTERGENIC
3L	10534445	3L_10534445_SNP [dm3] 3L_10541345_SNP [dm6]	A	T	4.384e^-4	0.998	INTRON A2bp1
2L	18364881	2L_18364881_SNP [dm3] 2L_18364881_SNP [dm6]	T	A	4.384e^-4	0.998	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3323547	3L_3323547_SNP [dm3] 3L_3323547_SNP [dm6]	T	C	4.385e^-4	0.998	SYNONYMOUS_CODING CG11526	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4081074	2L_4081074_SNP [dm3] 2L_4081074_SNP [dm6]	A	G	4.391e^-4	0.998	INTRON ed	TF binding site BDTNP1_TFBS_dl
X	9591944	X_9591944_SNP [dm3] X_9697911_SNP [dm6]	G	C	4.391e^-4	0.998	DOWNSTREAM btd INTERGENIC
X	5653366	X_5653366_SNP [dm3] X_5759333_SNP [dm6]	T	C	4.392e^-4	0.998	UTR_3_PRIME CG15771 DOWNSTREAM MAPk-Ak2	TF binding site mE1_TFBS_HSA
2R	7533647	2R_7533647_INS [dm3] 2R_11646142_INS [dm6]	C	CACTC	4.399e^-4	0.999	UTR_5_PRIME CG9003 UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4654053	2L_4654053_SNP [dm3] 2L_4654053_SNP [dm6]	C	G	4.406e^-4	0.999	INTERGENIC
3R	6662518	3R_6662518_SNP [dm3] 3R_10836796_SNP [dm6]	G	A	4.421e^-4	1	INTRON Cad86C
3L	9263050	3L_9263050_SNP [dm3] 3L_9269950_SNP [dm6]	G	A	4.426e^-4	1	INTRON GluRIB
3R	11333014	3R_11333014_SNP [dm3] 3R_15507292_SNP [dm6]	G	A	4.431e^-4	1	DOWNSTREAM CG44014 INTERGENIC
2R	17441516	2R_17441516_SNP [dm3] 2R_21554011_SNP [dm6]	C	T	4.431e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13971042	X_13971042_SNP [dm3] X_14077009_SNP [dm6]	C	T	4.445e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13207712	X_13207712_SNP [dm3] X_13313679_SNP [dm6]	C	T	4.446e^-4	1	INTRON IP3K2
2R	13306551	2R_13306551_SNP [dm3] 2R_17419046_SNP [dm6]	A	G	4.449e^-4	1	INTRON cnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	6180778	3R_6180778_SNP [dm3] 3R_10355056_SNP [dm6]	C	T	4.451e^-4	1	INTRON jumu	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16200733	3L_16200733_SNP [dm3] 3L_16207633_SNP [dm6]	A	G	4.463e^-4	1	INTERGENIC
2R	15269698	2R_15269698_SNP [dm3] 2R_19382193_SNP [dm6]	G	C	4.467e^-4	1	SYNONYMOUS_CODING CG10073
2L	9544153	2L_9544153_SNP [dm3] 2L_9544153_SNP [dm6]	G	A	4.475e^-4	1	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC	TF binding site mE1_TFBS_cad
3R	21730637	3R_21730637_SNP [dm3] 3R_25904915_SNP [dm6]	C	G	4.480e^-4	1	DOWNSTREAM CG31089 & 1 other INTRON CR43259
3R	6817387	3R_6817387_SNP [dm3] 3R_10991665_SNP [dm6]	A	G	4.491e^-4	1	INTRON CG34114
2R	4105670	2R_4105670_SNP [dm3] 2R_8218165_SNP [dm6]	A	C	4.495e^-4	1	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad
2L	6974958	2L_6974958_SNP [dm3] 2L_6974958_SNP [dm6]	C	A	4.495e^-4	1	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	12322022	2L_12322022_SNP [dm3] 2L_12322022_SNP [dm6]	G	A	4.511e^-4	1	INTERGENIC	transposable element FlyBase
3L	7946779	3L_7946779_SNP [dm3] 3L_7953679_SNP [dm6]	A	C	4.522e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14107020	3L_14107020_SNP [dm3] 3L_14113920_SNP [dm6]	C	T	4.535e^-4	1	INTRON Sox21b
2L	3851608	2L_3851608_SNP [dm3] 2L_3851608_SNP [dm6]	G	C	4.545e^-4	1	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	20039810	X_20039810_SNP [dm3] X_20145777_SNP [dm6]	A	G	4.549e^-4	1	INTERGENIC
3L	2899060	3L_2899060_SNP [dm3] 3L_2899060_SNP [dm6]	C	T	4.564e^-4	1	INTRON Shab
3R	12810251	3R_12810251_SNP [dm3] 3R_16984529_SNP [dm6]	C	G	4.564e^-4	1	INTRON CG18622
2R	15270269	2R_15270269_SNP [dm3] 2R_19382764_SNP [dm6]	T	A	4.565e^-4	1	SYNONYMOUS_CODING CG10073
2R	15041365	2R_15041365_SNP [dm3] 2R_19153860_SNP [dm6]	A	T	4.566e^-4	1	INTRON ena
2L	20739089	2L_20739089_SNP [dm3] 2L_20739089_SNP [dm6]	A	T	4.570e^-4	1	INTRON Fs_2_Ket
3L	5317465	3L_5317465_SNP [dm3] 3L_5324365_SNP [dm6]	T	A	4.575e^-4	1	INTERGENIC
X	10277328	X_10277328_SNP [dm3] X_10383295_SNP [dm6]	A	G	4.575e^-4	1	UTR_3_PRIME CG17841 DOWNSTREAM Psf3
3L	20976929	3L_20976929_SNP [dm3] 3L_20983829_SNP [dm6]	A	G	4.576e^-4	1	INTERGENIC
X	640905	X_640905_SNP [dm3] X_746872_SNP [dm6]	G	A	4.579e^-4	1	INTRON sdk
3L	10479340	3L_10479340_SNP [dm3] 3L_10486240_SNP [dm6]	G	C	4.579e^-4	1	INTRON A2bp1
2L	4434203	2L_4434203_SNP [dm3] 2L_4434203_SNP [dm6]	C	A	4.580e^-4	1	SYNONYMOUS_CODING CG34177 UTR_5_PRIME CG34178 UPSTREAM CG34178 INTRON CG15431
3L	3593913	3L_3593913_SNP [dm3] 3L_3593913_SNP [dm6]	G	A	4.583e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16311073	X_16311073_SNP [dm3] X_16417040_SNP [dm6]	A	G	4.587e^-4	1	SYNONYMOUS_CODING Traf-like UTR_3_PRIME AnxB11 DOWNSTREAM AnxB11
2R	2993354	2R_2993354_DEL [dm3] 2R_7105849_DEL [dm6]	GG	G	4.596e^-4	1	UPSTREAM esn INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3R	13936805	3R_13936805_SNP [dm3] 3R_18111083_SNP [dm6]	G	T	4.603e^-4	1	INTRON sr	TF binding site mE1_TFBS_HSA
3L	3849670	3L_3849670_SNP [dm3] 3L_3849670_SNP [dm6]	A	G	4.606e^-4	1	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	946936	3L_946936_SNP [dm3] 3L_946936_SNP [dm6]	G	A	4.613e^-4	1	INTRON Glut1
2L	9542800	2L_9542800_SNP [dm3] 2L_9542800_SNP [dm6]	G	A	4.619e^-4	1	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
X	3447844	X_3447844_SNP [dm3] X_3553811_SNP [dm6]	T	A	4.624e^-4	1	INTRON CG32791	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	587480	3R_587480_SNP [dm3] 3R_4761758_SNP [dm6]	T	A	4.635e^-4	1	INTRON atms & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13239313	2L_13239313_SNP [dm3] 2L_13239313_SNP [dm6]	T	C	4.643e^-4	1	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC
2R	15918005	2R_15918005_SNP [dm3] 2R_20030500_SNP [dm6]	T	C	4.653e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	18403604	2R_18403604_SNP [dm3] 2R_22516099_SNP [dm6]	T	G	4.654e^-4	1	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9547450	2L_9547450_SNP [dm3] 2L_9547450_SNP [dm6]	T	A	4.672e^-4	1	DOWNSTREAM jp & 1 other INTERGENIC
2L	7208454	2L_7208454_SNP [dm3] 2L_7208454_SNP [dm6]	G	T	4.679e^-4	1	SYNONYMOUS_CODING CG13784
2L	9542630	2L_9542630_SNP [dm3] 2L_9542630_SNP [dm6]	T	G	4.688e^-4	1	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
3L	6295037	3L_6295037_SNP [dm3] 3L_6301937_SNP [dm6]	A	T	4.692e^-4	1	DOWNSTREAM CR45420 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14828413	3L_14828413_SNP [dm3] 3L_14835313_SNP [dm6]	T	C	4.699e^-4	1	INTRON CG17839
3R	4706205	3R_4706205_SNP [dm3] 3R_8880483_SNP [dm6]	G	A	4.700e^-4	1	INTRON pyd
3L	13185264	3L_13185264_SNP [dm3] 3L_13192164_SNP [dm6]	A	C	4.710e^-4	1	INTERGENIC
2R	17459673	2R_17459673_SNP [dm3] 2R_21572168_SNP [dm6]	A	G	4.714e^-4	1	UPSTREAM CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17787982	3L_17787982_SNP [dm3] 3L_17794882_SNP [dm6]	T	C	4.727e^-4	1	SYNONYMOUS_CODING CG42816	TF binding site mE1_TFBS_sens
2L	1485154	2L_1485154_SNP [dm3] 2L_1485154_SNP [dm6]	G	C	4.732e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4355139	3L_4355139_DEL [dm3] 3L_4355139_DEL [dm6]	AA	A	4.734e^-4	1	INTRON Cip4
2R	13310104	2R_13310104_SNP [dm3] 2R_17422599_SNP [dm6]	G	A	4.736e^-4	1	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	795855	2L_795855_SNP [dm3] 2L_795855_SNP [dm6]	G	A	4.738e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14828465	3L_14828465_SNP [dm3] 3L_14835365_SNP [dm6]	G	A	4.746e^-4	1	INTRON CG17839
3L	2778472	3L_2778472_SNP [dm3] 3L_2778472_SNP [dm6]	G	A	4.756e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11534102	3L_11534102_SNP [dm3] 3L_11541002_SNP [dm6]	C	T	4.757e^-4	1	INTRON Mob2
2L	21998839	2L_21998839_DEL [dm3] 2L_21998839_DEL [dm6]	TTTTTT	T	4.762e^-4	1	DOWNSTREAM CR44916 INTERGENIC
2R	14537771	2R_14537771_SNP [dm3] 2R_18650266_SNP [dm6]	G	A	4.787e^-4	1	INTRON SP2637
2L	9542941	2L_9542941_SNP [dm3] 2L_9542941_SNP [dm6]	C	T	4.790e^-4	1	UTR_5_PRIME Cpr30B DOWNSTREAM CG17855
2R	2942698	2R_2942698_SNP [dm3] 2R_7055193_SNP [dm6]	T	A	4.790e^-4	1	UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42En INTRON Tsp42Eo
X	10280096	X_10280096_SNP [dm3] X_10386063_SNP [dm6]	C	T	4.796e^-4	1	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9537332	2L_9537332_SNP [dm3] 2L_9537332_SNP [dm6]	A	G	4.798e^-4	1	SPLICE_SITE_REGION Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_cad
3L	5083852	3L_5083852_SNP [dm3] 3L_5083852_SNP [dm6]	C	G	4.798e^-4	1	INTERGENIC
3L	3714710	3L_3714710_SNP [dm3] 3L_3714710_SNP [dm6]	G	T	4.802e^-4	1	UTR_3_PRIME CG43089 DOWNSTREAM CG32264 & 1 other
2L	9544478	2L_9544478_SNP [dm3] 2L_9544478_SNP [dm6]	C	A	4.806e^-4	1	NON_SYNONYMOUS_CODING CG13113 DOWNSTREAM Cpr30B	TF binding site mE1_TFBS_cad
2L	8376862	2L_8376862_SNP [dm3] 2L_8376862_SNP [dm6]	C	T	4.806e^-4	1	UPSTREAM CG17294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12422141	X_12422141_SNP [dm3] X_12528108_SNP [dm6]	A	C	4.807e^-4	1	INTRON CG43921
X	12422146	X_12422146_SNP [dm3] X_12528113_SNP [dm6]	G	T	4.807e^-4	1	INTRON CG43921
2R	20251898	2R_20251898_SNP [dm3] 2R_24364375_SNP [dm6]	G	A	4.813e^-4	1	INTRON bs & 1 other
2R	20251899	2R_20251899_SNP [dm3] 2R_24364376_SNP [dm6]	C	A	4.813e^-4	1	INTRON bs & 1 other
X	19044375	X_19044375_SNP [dm3] X_19150342_SNP [dm6]	A	G	4.819e^-4	1	INTRON RhoGAP18B
2L	4081018	2L_4081018_SNP [dm3] 2L_4081018_SNP [dm6]	A	G	4.830e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17596515	2R_17596515_SNP [dm3] 2R_21709010_SNP [dm6]	T	A	4.832e^-4	1	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17276932	2R_17276932_SNP [dm3] 2R_21389427_SNP [dm6]	C	T	4.835e^-4	1	START_GAINED Acox57D-d UTR_5_PRIME Acox57D-d DOWNSTREAM Acox57D-p
2L	9846093	2L_9846093_SNP [dm3] 2L_9846093_SNP [dm6]	C	T	4.836e^-4	1	INTRON nAChRalpha6
2R	14388998	2R_14388998_SNP [dm3] 2R_18501493_SNP [dm6]	A	T	4.846e^-4	1	INTERGENIC
3L	11063912	3L_11063912_DEL [dm3] 3L_11070812_DEL [dm6]	AA	A	4.851e^-4	1	UTR_5_PRIME Mocs1 UPSTREAM CG6310
2R	19558415	2R_19558415_SNP [dm3] 2R_23670892_SNP [dm6]	T	C	4.860e^-4	1	INTRON Pde8	TF binding site mE1_TFBS_chinmo
3L	6910078	3L_6910078_SNP [dm3] 3L_6916978_SNP [dm6]	T	A	4.866e^-4	1	INTERGENIC
3L	5283560	3L_5283560_SNP [dm3] 3L_5290460_SNP [dm6]	G	A	4.866e^-4	1	INTERGENIC
X	16224824	X_16224824_SNP [dm3] X_16330791_SNP [dm6]	C	T	4.868e^-4	1	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14388920	2R_14388920_SNP [dm3] 2R_18501415_SNP [dm6]	A	T	4.896e^-4	1	INTERGENIC
3R	17309739	3R_17309739_SNP [dm3] 3R_21484017_SNP [dm6]	G	T	4.903e^-4	1	SYNONYMOUS_CODING CG7922
3L	14524290	3L_14524290_SNP [dm3] 3L_14531190_SNP [dm6]	A	T	4.908e^-4	1	INTRON bbg
2L	21010947	2L_21010947_SNP [dm3] 2L_21010947_SNP [dm6]	A	T	4.910e^-4	1	INTRON CG42238
3L	14011950	3L_14011950_SNP [dm3] 3L_14018850_SNP [dm6]	A	G	4.913e^-4	1	UTR_3_PRIME upSET	TF binding site mE1_TFBS_kn
3L	14828466	3L_14828466_SNP [dm3] 3L_14835366_SNP [dm6]	A	T	4.914e^-4	1	INTRON CG17839
3L	6909965	3L_6909965_SNP [dm3] 3L_6916865_SNP [dm6]	C	T	4.929e^-4	1	INTERGENIC
3L	3595406	3L_3595406_SNP [dm3] 3L_3595406_SNP [dm6]	G	A	4.929e^-4	1	INTRON Eip63E
3R	10828808	3R_10828808_SNP [dm3] 3R_15003086_SNP [dm6]	G	A	4.943e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8377930	2L_8377930_SNP [dm3] 2L_8377930_SNP [dm6]	C	T	4.973e^-4	1	SYNONYMOUS_CODING CG17294 DOWNSTREAM Aats-ala
X	3419744	X_3419744_SNP [dm3] X_3525711_SNP [dm6]	G	A	4.977e^-4	1	INTRON CG32791
3R	26959872	3R_26959872_SNP [dm3] 3R_31134150_SNP [dm6]	G	A	4.985e^-4	1	UPSTREAM Gycbeta100B INTERGENIC
2L	2893643	2L_2893643_SNP [dm3] 2L_2893643_SNP [dm6]	G	T	4.986e^-4	1	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18061201	2R_18061201_SNP [dm3] 2R_22173696_SNP [dm6]	T	C	4.987e^-4	1	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16840281	3R_16840281_SNP [dm3] 3R_21014559_SNP [dm6]	T	A	4.988e^-4	1	UTR_3_PRIME Calx DOWNSTREAM Calx
3R	16276704	3R_16276704_SNP [dm3] 3R_20450982_SNP [dm6]	G	A	5.002e^-4	1	INTRON Gfrl
3L	2559841	3L_2559841_SNP [dm3] 3L_2559841_SNP [dm6]	A	G	5.026e^-4	1	INTRON msn
3R	17209259	3R_17209259_SNP [dm3] 3R_21383537_SNP [dm6]	C	T	5.028e^-4	1	INTERGENIC
3L	2559840	3L_2559840_SNP [dm3] 3L_2559840_SNP [dm6]	A	G	5.029e^-4	1	INTRON msn
2L	14704875	2L_14704875_SNP [dm3] 2L_14704875_SNP [dm6]	A	T	5.043e^-4	1	INTERGENIC
2R	6076185	2R_6076185_SNP [dm3] 2R_10188680_SNP [dm6]	G	T	5.048e^-4	1	INTRON KCNQ
2L	11791186	2L_11791186_SNP [dm3] 2L_11791186_SNP [dm6]	T	C	5.049e^-4	1	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14932
2L	8978806	2L_8978806_SNP [dm3] 2L_8978806_SNP [dm6]	G	A	5.055e^-4	1	INTRON CG13101
3L	2562385	3L_2562385_SNP [dm3] 3L_2562385_SNP [dm6]	G	A	5.057e^-4	1	SYNONYMOUS_CODING msn INTRON msn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14801481	2L_14801481_SNP [dm3] 2L_14801481_SNP [dm6]	C	A	5.060e^-4	1	UPSTREAM CG33308 INTERGENIC
3R	11347969	3R_11347969_SNP [dm3] 3R_15522247_SNP [dm6]	A	G	5.065e^-4	1	INTERGENIC
3L	15955767	3L_15955767_SNP [dm3] 3L_15962667_SNP [dm6]	T	C	5.070e^-4	1	NON_SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	9541366	2L_9541366_SNP [dm3] 2L_9541366_SNP [dm6]	G	A	5.071e^-4	1	NON_SYNONYMOUS_CODING CG17855
3L	5850765	3L_5850765_INS [dm3] 3L_5857665_INS [dm6]	G	GG	5.071e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	18858214	2R_18858214_SNP [dm3] 2R_22970691_SNP [dm6]	C	G	5.076e^-4	1	INTERGENIC
X	19044387	X_19044387_DEL [dm3] X_19150354_DEL [dm6]	TCCAG	T	5.078e^-4	1	INTRON RhoGAP18B
3L	6129064	3L_6129064_SNP [dm3] 3L_6135964_SNP [dm6]	G	A	5.083e^-4	1	UPSTREAM Lcp65Ag1 DOWNSTREAM Lcp65Af INTERGENIC	transposable element FlyBase
3L	2777212	3L_2777212_SNP [dm3] 3L_2777212_SNP [dm6]	A	G	5.087e^-4	1	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9543719	2L_9543719_SNP [dm3] 2L_9543719_SNP [dm6]	G	A	5.091e^-4	1	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3L	13100412	3L_13100412_SNP [dm3] 3L_13107312_SNP [dm6]	A	C	5.094e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	21364540	X_21364540_SNP [dm3] X_21493513_SNP [dm6]	C	G	5.098e^-4	1	INTERGENIC
3L	16007225	3L_16007225_SNP [dm3] 3L_16014125_SNP [dm6]	C	G	5.100e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18576891	2R_18576891_SNP [dm3] 2R_22689386_SNP [dm6]	G	C	5.100e^-4	1	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1345167	3L_1345167_SNP [dm3] 3L_1345167_SNP [dm6]	G	T	5.101e^-4	1	SPLICE_SITE_REGION Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13671942	3L_13671942_SNP [dm3] 3L_13678842_SNP [dm6]	G	C	5.109e^-4	1	INTRON bru-3
X	15461654	X_15461654_SNP [dm3] X_15567621_SNP [dm6]	G	A	5.115e^-4	1	INTERGENIC
3L	9322303	3L_9322303_SNP [dm3] 3L_9329203_SNP [dm6]	A	G	5.118e^-4	1	INTERGENIC
X	22239748	X_22239748_SNP [dm3] X_22837912_SNP [dm6]	A	T	5.129e^-4	1	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19454829	2R_19454829_SNP [dm3] 2R_23567306_SNP [dm6]	C	T	5.131e^-4	1	UPSTREAM apt INTRON apt	TF binding site mE1_TFBS_chinmo
3L	6910126	3L_6910126_SNP [dm3] 3L_6917026_SNP [dm6]	C	A	5.138e^-4	1	INTERGENIC
2L	13295428	2L_13295428_SNP [dm3] 2L_13295428_SNP [dm6]	A	T	5.146e^-4	1	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_dl
3R	20503259	3R_20503259_SNP [dm3] 3R_24677537_SNP [dm6]	G	A	5.155e^-4	1	INTRON slo
X	20800586	X_20800586_DEL [dm3] X_20929559_DEL [dm6]	TTTTGGC	T	5.164e^-4	1	INTERGENIC	transposable element FlyBase
3L	17760418	3L_17760418_SNP [dm3] 3L_17767318_SNP [dm6]	A	C	5.165e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18772641	3R_18772641_SNP [dm3] 3R_22946919_SNP [dm6]	A	C	5.176e^-4	1	INTRON klg	TF binding site BDTNP1_TFBS_prd
2L	3347168	2L_3347168_SNP [dm3] 2L_3347168_SNP [dm6]	G	T	5.178e^-4	1	INTRON E23
2L	14978225	2L_14978225_DEL [dm3] 2L_14978225_DEL [dm6]	AGCA	A	5.179e^-4	1	INTRON mol
3L	12381042	3L_12381042_SNP [dm3] 3L_12387942_SNP [dm6]	C	A	5.181e^-4	1	START_GAINED Ncc69 UTR_5_PRIME Ncc69 INTRON Ncc69
3L	12381043	3L_12381043_SNP [dm3] 3L_12387943_SNP [dm6]	A	T	5.181e^-4	1	UTR_5_PRIME Ncc69 INTRON Ncc69
2R	17448918	2R_17448918_SNP [dm3] 2R_21561413_SNP [dm6]	T	A	5.182e^-4	1	SYNONYMOUS_CODING CG10440	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15454367	3L_15454367_SNP [dm3] 3L_15461267_SNP [dm6]	C	G	5.185e^-4	1	INTERGENIC
X	9591967	X_9591967_SNP [dm3] X_9697934_SNP [dm6]	A	C	5.226e^-4	1	DOWNSTREAM btd INTERGENIC
X	9592147	X_9592147_DEL [dm3] X_9698114_DEL [dm6]	CCCGGTC	C	5.227e^-4	1	DOWNSTREAM btd INTERGENIC
X	20797119	X_20797119_SNP [dm3] X_20926092_SNP [dm6]	T	C	5.227e^-4	1	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12562090	3L_12562090_SNP [dm3] 3L_12568990_SNP [dm6]	T	G	5.234e^-4	1	INTRON sowah	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17371714	2R_17371714_SNP [dm3] 2R_21484209_SNP [dm6]	T	G	5.234e^-4	1	NON_SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14699389	2L_14699389_SNP [dm3] 2L_14699389_SNP [dm6]	T	G	5.235e^-4	1	INTERGENIC
X	20024609	X_20024609_SNP [dm3] X_20130576_SNP [dm6]	A	G	5.239e^-4	1	DOWNSTREAM CG42582 INTERGENIC
2R	13306555	2R_13306555_SNP [dm3] 2R_17419050_SNP [dm6]	G	A	5.243e^-4	1	INTRON cnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	15347181	3L_15347181_SNP [dm3] 3L_15354081_SNP [dm6]	G	A	5.244e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4863117	X_4863117_SNP [dm3] X_4969084_SNP [dm6]	T	G	5.247e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4863121	X_4863121_SNP [dm3] X_4969088_SNP [dm6]	A	T	5.247e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16424564	3L_16424564_SNP [dm3] 3L_16431464_SNP [dm6]	C	T	5.253e^-4	1	INTRON CG33158 & 1 other
3L	15275164	3L_15275164_SNP [dm3] 3L_15282064_SNP [dm6]	G	A	5.257e^-4	1	INTERGENIC
2L	10315618	2L_10315618_SNP [dm3] 2L_10315618_SNP [dm6]	A	G	5.268e^-4	1	SYNONYMOUS_CODING CG4972	TF binding site mE1_TFBS_sens
3L	3594092	3L_3594092_INS [dm3] 3L_3594092_INS [dm6]	T	TTTTATTTT	5.271e^-4	1	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16870042	3R_16870042_SNP [dm3] 3R_21044320_SNP [dm6]	C	G	5.287e^-4	1	SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
2R	17460061	2R_17460061_DEL [dm3] 2R_21572556_DEL [dm6]	AATGCGGA	A	5.290e^-4	1	INTRON CG10440
3L	1638950	3L_1638950_SNP [dm3] 3L_1638950_SNP [dm6]	C	A	5.315e^-4	1	SYNONYMOUS_CODING metl UPSTREAM Bgb INTRON metl	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	8958533	2L_8958533_SNP [dm3] 2L_8958533_SNP [dm6]	A	T	5.318e^-4	1	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1103186	2L_1103186_SNP [dm3] 2L_1103186_SNP [dm6]	A	G	5.332e^-4	1	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3L	5245219	3L_5245219_SNP [dm3] 3L_5252119_SNP [dm6]	C	G	5.332e^-4	1	INTRON shep
3L	13100374	3L_13100374_SNP [dm3] 3L_13107274_SNP [dm6]	C	T	5.340e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	14085496	2R_14085496_SNP [dm3] 2R_18197991_SNP [dm6]	C	G	5.343e^-4	1	INTERGENIC
3R	10412084	3R_10412084_SNP [dm3] 3R_14586362_SNP [dm6]	T	A	5.345e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17276952	2R_17276952_SNP [dm3] 2R_21389447_SNP [dm6]	T	C	5.351e^-4	1	UTR_5_PRIME Acox57D-d DOWNSTREAM Acox57D-p
3R	15061907	3R_15061907_SNP [dm3] 3R_19236185_SNP [dm6]	C	A	5.351e^-4	1	INTRON unc79
2L	8786034	2L_8786034_SNP [dm3] 2L_8786034_SNP [dm6]	T	A	5.353e^-4	1	INTERGENIC
3L	24426964	3L_24426964_SNP [dm3] 3L_24433864_SNP [dm6]	T	G	5.355e^-4	1	INTERGENIC
2L	2399853	2L_2399853_SNP [dm3] 2L_2399853_SNP [dm6]	G	C	5.365e^-4	1	UPSTREAM VGlut INTRON VGlut
3L	16875628	3L_16875628_DEL [dm3] 3L_16882528_DEL [dm6]	CC	C	5.373e^-4	1	INTRON Lmpt
X	6451604	X_6451604_SNP [dm3] X_6557571_SNP [dm6]	A	C	5.374e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	3875306	3L_3875306_SNP [dm3] 3L_3875306_SNP [dm6]	T	C	5.396e^-4	1	INTERGENIC
2L	9533433	2L_9533433_SNP [dm3] 2L_9533433_SNP [dm6]	A	T	5.397e^-4	1	INTRON Oatp30B

By genomic position
Variant impact
Gene name

mn_Resp_Helional phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results