DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.557e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.054	0.0799

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2126 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16573867	2R_16573867_SNP [dm3] 2R_20686362_SNP [dm6]	A	T	4.719e^-7	0.875	SYNONYMOUS_CODING Gr57a
3L	9209039	3L_9209039_SNP [dm3] 3L_9215939_SNP [dm6]	G	A	9.545e^-7	0.875	DOWNSTREAM CG4476 INTERGENIC
3L	18100184	3L_18100184_SNP [dm3] 3L_18107084_SNP [dm6]	A	G	2.379e^-6	0.875	SYNONYMOUS_CODING mRpS26 UPSTREAM CG13698 DOWNSTREAM CG5147	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26962890	3R_26962890_SNP [dm3] 3R_31137168_SNP [dm6]	T	C	2.953e^-6	0.875	INTRON Gycbeta100B
3L	10554240	3L_10554240_SNP [dm3] 3L_10561140_SNP [dm6]	G	T	4.358e^-6	0.875	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8712598	3L_8712598_SNP [dm3] 3L_8719498_SNP [dm6]	A	G	4.862e^-6	0.875	SYNONYMOUS_CODING SrpRbeta DOWNSTREAM CG32022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3L	8679532	3L_8679532_SNP [dm3] 3L_8686432_SNP [dm6]	C	T	5.005e^-6	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10007844	2R_10007844_SNP [dm3] 2R_14120339_SNP [dm6]	A	C	5.333e^-6	0.875	INTRON Prosap
X	672997	X_672997_SNP [dm3] X_778964_SNP [dm6]	A	T	5.807e^-6	0.875	INTRON fz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3444129	2L_3444129_DEL [dm3] 2L_3444129_DEL [dm6]	ACTGTCACCTAACACTTGGC...	A	6.204e^-6	0.875	INTERGENIC
3R	24674386	3R_24674386_SNP [dm3] 3R_28848664_SNP [dm6]	G	A	6.799e^-6	0.875	INTRON spg
3R	25933219	3R_25933219_SNP [dm3] 3R_30107497_SNP [dm6]	A	G	7.647e^-6	0.875	INTRON sima
3L	7324956	3L_7324956_SNP [dm3] 3L_7331856_SNP [dm6]	C	A	8.764e^-6	0.875	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
3R	13796364	3R_13796364_SNP [dm3] 3R_17970642_SNP [dm6]	G	T	1.048e^-5	0.875	INTRON cpo
2R	10007811	2R_10007811_DEL [dm3] 2R_14120306_DEL [dm6]	TT	T	1.055e^-5	0.875	INTRON Prosap
2L	2903316	2L_2903316_SNP [dm3] 2L_2903316_SNP [dm6]	A	G	1.203e^-5	0.875	INTRON lilli	TF binding site mE1_TFBS_chinmo
3L	8724359	3L_8724359_SNP [dm3] 3L_8731259_SNP [dm6]	A	T	1.219e^-5	0.875	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3L	18099665	3L_18099665_SNP [dm3] 3L_18106565_SNP [dm6]	C	T	1.250e^-5	0.875	UPSTREAM mRpS26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	4788320	X_4788320_SNP [dm3] X_4894287_SNP [dm6]	A	T	1.258e^-5	0.875	INTRON CG42594
2L	9657181	2L_9657181_SNP [dm3] 2L_9657181_SNP [dm6]	G	T	1.306e^-5	0.875	SYNONYMOUS_CODING CG33299
3R	25933228	3R_25933228_SNP [dm3] 3R_30107506_SNP [dm6]	A	T	1.346e^-5	0.875	INTRON sima
3R	26960158	3R_26960158_SNP [dm3] 3R_31134436_SNP [dm6]	C	G	1.352e^-5	0.875	UTR_5_PRIME Gycbeta100B
2R	9566378	2R_9566378_SNP [dm3] 2R_13678873_SNP [dm6]	T	A	1.372e^-5	0.875	INTRON fas
2R	16573792	2R_16573792_SNP [dm3] 2R_20686287_SNP [dm6]	C	T	1.545e^-5	0.875	SYNONYMOUS_CODING Gr57a
3L	16246288	3L_16246288_SNP [dm3] 3L_16253188_SNP [dm6]	A	G	1.611e^-5	0.875	UPSTREAM CG13055 INTERGENIC
2L	4372845	2L_4372845_SNP [dm3] 2L_4372845_SNP [dm6]	C	T	1.626e^-5	0.875	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	19907366	3R_19907366_SNP [dm3] 3R_24081644_SNP [dm6]	C	T	1.667e^-5	0.875	INTRON 4EHP
2L	9646337	2L_9646337_SNP [dm3] 2L_9646337_SNP [dm6]	A	G	1.708e^-5	0.875	SYNONYMOUS_CODING Apoltp
3L	10554241	3L_10554241_SNP [dm3] 3L_10561141_SNP [dm6]	T	C	1.730e^-5	0.875	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16309493	X_16309493_SNP [dm3] X_16415460_SNP [dm6]	A	G	1.782e^-5	0.875	NON_SYNONYMOUS_CODING Traf-like UTR_5_PRIME Traf-like DOWNSTREAM CG4301 INTRON Traf-like	TF binding site BDTNP1_TFBS_twi
3R	26955176	3R_26955176_SNP [dm3] 3R_31129454_SNP [dm6]	G	A	1.800e^-5	0.875	SYNONYMOUS_CODING CG15556
3L	1267022	3L_1267022_SNP [dm3] 3L_1267022_SNP [dm6]	G	A	1.801e^-5	0.875	INTRON CG9134
3R	26807112	3R_26807112_SNP [dm3] 3R_30981390_SNP [dm6]	T	C	1.815e^-5	0.875	INTRON 5-HT7
3R	19698058	3R_19698058_SNP [dm3] 3R_23872336_SNP [dm6]	A	C	1.861e^-5	0.875	INTRON Pli
3R	10808677	3R_10808677_SNP [dm3] 3R_14982955_SNP [dm6]	G	C	1.958e^-5	0.875	INTERGENIC
3R	25933227	3R_25933227_SNP [dm3] 3R_30107505_SNP [dm6]	G	C	1.966e^-5	0.875	INTRON sima
3L	6992444	3L_6992444_SNP [dm3] 3L_6999344_SNP [dm6]	G	T	2.065e^-5	0.875	INTRON Mp
X	12632358	X_12632358_SNP [dm3] X_12738325_SNP [dm6]	A	G	2.065e^-5	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3L	1590095	3L_1590095_SNP [dm3] 3L_1590095_SNP [dm6]	A	T	2.156e^-5	0.875	INTRON CG13917
3L	8712586	3L_8712586_SNP [dm3] 3L_8719486_SNP [dm6]	A	T	2.233e^-5	0.875	SYNONYMOUS_CODING SrpRbeta DOWNSTREAM CG32022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
2R	17974300	2R_17974300_SNP [dm3] 2R_22086795_SNP [dm6]	C	A	2.249e^-5	0.875	SYNONYMOUS_CODING CG13502 INTRON CG13502
3L	16246319	3L_16246319_SNP [dm3] 3L_16253219_SNP [dm6]	A	C	2.259e^-5	0.875	UPSTREAM CG13055 INTERGENIC
3R	17498414	3R_17498414_SNP [dm3] 3R_21672692_SNP [dm6]	G	T	2.344e^-5	0.875	UTR_3_PRIME CG31176 UPSTREAM DNApol-alpha180
3R	17497826	3R_17497826_SNP [dm3] 3R_21672104_SNP [dm6]	G	A	2.372e^-5	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6494050	3L_6494050_SNP [dm3] 3L_6500950_SNP [dm6]	T	C	2.383e^-5	0.875	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	7759786	2L_7759786_SNP [dm3] 2L_7759786_SNP [dm6]	T	C	2.465e^-5	0.875	INTRON CG7196
3R	19907689	3R_19907689_SNP [dm3] 3R_24081967_SNP [dm6]	C	A	2.468e^-5	0.875	INTRON 4EHP
3R	27025773	3R_27025773_SNP [dm3] 3R_31200051_SNP [dm6]	C	T	2.475e^-5	0.875	INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12629524	X_12629524_INS [dm3] X_12735491_INS [dm6]	A	ATACAAA	2.535e^-5	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8879573	2R_8879573_SNP [dm3] 2R_12992068_SNP [dm6]	G	A	2.595e^-5	0.875	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6390382	3L_6390382_SNP [dm3] 3L_6397282_SNP [dm6]	T	A	2.730e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16612137	2R_16612137_INS [dm3] 2R_20724632_INS [dm6]	A	AGACACCCAAA...	2.822e^-5	0.875	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9665906	2L_9665906_SNP [dm3] 2L_9665906_SNP [dm6]	T	A	2.889e^-5	0.875	INTERGENIC
2L	9665907	2L_9665907_SNP [dm3] 2L_9665907_SNP [dm6]	C	G	2.889e^-5	0.875	INTERGENIC
2L	9665924	2L_9665924_SNP [dm3] 2L_9665924_SNP [dm6]	T	A	2.889e^-5	0.875	INTERGENIC
2L	9665909	2L_9665909_SNP [dm3] 2L_9665909_SNP [dm6]	G	A	2.899e^-5	0.875	INTERGENIC
3L	18835063	3L_18835063_SNP [dm3] 3L_18841963_SNP [dm6]	A	C	2.977e^-5	0.875	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2186739	2L_2186739_SNP [dm3] 2L_2186739_SNP [dm6]	C	G	2.987e^-5	0.875	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26221652	3R_26221652_SNP [dm3] 3R_30395930_SNP [dm6]	T	C	2.992e^-5	0.875	INTERGENIC
X	11141078	X_11141078_SNP [dm3] X_11247045_SNP [dm6]	G	A	3.007e^-5	0.875	SYNONYMOUS_CODING CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18868153	3R_18868153_SNP [dm3] 3R_23042431_SNP [dm6]	C	T	3.013e^-5	0.875	SYNONYMOUS_CODING CG13838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2132745	3L_2132745_SNP [dm3] 3L_2132745_SNP [dm6]	G	A	3.130e^-5	0.875	INTRON zormin
3L	18099602	3L_18099602_SNP [dm3] 3L_18106502_SNP [dm6]	A	T	3.138e^-5	0.875	UPSTREAM mRpS26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1193619	2L_1193619_SNP [dm3] 2L_1193619_SNP [dm6]	G	A	3.164e^-5	0.875	INTRON CG5001
X	11438528	X_11438528_SNP [dm3] X_11544495_SNP [dm6]	A	G	3.184e^-5	0.875	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7325106	3L_7325106_SNP [dm3] 3L_7332006_SNP [dm6]	A	G	3.286e^-5	0.875	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
3L	22158157	3L_22158157_SNP [dm3] 3L_22165057_SNP [dm6]	G	A	3.423e^-5	0.875	INTRON olf413	TF binding site mE1_TFBS_Kr
3R	21639337	3R_21639337_SNP [dm3] 3R_25813615_SNP [dm6]	A	G	3.435e^-5	0.875	DOWNSTREAM CG17770 & 1 other INTERGENIC
2L	4097536	2L_4097536_SNP [dm3] 2L_4097536_SNP [dm6]	C	T	3.481e^-5	0.875	INTRON ed
2L	1021743	2L_1021743_SNP [dm3] 2L_1021743_SNP [dm6]	C	G	3.481e^-5	0.875	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18848338	3L_18848338_SNP [dm3] 3L_18855238_SNP [dm6]	C	T	3.551e^-5	0.875	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10781839	X_10781839_SNP [dm3] X_10887806_SNP [dm6]	A	G	3.552e^-5	0.875	INTRON Ork1	TF binding site mE1_TFBS_inv
2R	10007815	2R_10007815_SNP [dm3] 2R_14120310_SNP [dm6]	A	G	3.786e^-5	0.875	INTRON Prosap
3R	12976222	3R_12976222_SNP [dm3] 3R_17150500_SNP [dm6]	C	G	3.793e^-5	0.875	UPSTREAM CG5285 DOWNSTREAM Det INTERGENIC	TF binding site mE1_TFBS_ttk
2L	4280335	2L_4280335_SNP [dm3] 2L_4280335_SNP [dm6]	T	C	3.803e^-5	0.875	INTRON Art2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	1139286	2L_1139286_SNP [dm3] 2L_1139286_SNP [dm6]	G	C	3.986e^-5	0.875	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	256339	2L_256339_SNP [dm3] 2L_256339_SNP [dm6]	G	A	3.988e^-5	0.875	INTRON CG3645
3L	2104988	3L_2104988_SNP [dm3] 3L_2104988_SNP [dm6]	A	G	4.033e^-5	0.875	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
3R	10808478	3R_10808478_SNP [dm3] 3R_14982756_SNP [dm6]	A	C	4.069e^-5	0.875	INTERGENIC
3L	13313472	3L_13313472_SNP [dm3] 3L_13320372_SNP [dm6]	A	C	4.080e^-5	0.875	INTERGENIC
2L	1611183	2L_1611183_SNP [dm3] 2L_1611183_SNP [dm6]	G	A	4.139e^-5	0.875	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1912431	2L_1912431_SNP [dm3] 2L_1912431_SNP [dm6]	A	T	4.218e^-5	0.875	INTRON CG7337
3R	27022990	3R_27022990_SNP [dm3] 3R_31197268_SNP [dm6]	A	G	4.221e^-5	0.875	INTRON CG1544	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12976408	3R_12976408_SNP [dm3] 3R_17150686_SNP [dm6]	T	G	4.234e^-5	0.875	NON_SYNONYMOUS_CODING CG5285 DOWNSTREAM Det	TF binding site mE1_TFBS_ttk
2L	1610856	2L_1610856_SNP [dm3] 2L_1610856_SNP [dm6]	C	A	4.235e^-5	0.875	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25806070	3R_25806070_SNP [dm3] 3R_29980348_SNP [dm6]	C	T	4.398e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19215728	2R_19215728_SNP [dm3] 2R_23328205_SNP [dm6]	G	A	4.400e^-5	0.875	UPSTREAM CG30417 INTERGENIC
3L	18848339	3L_18848339_DEL [dm3] 3L_18855239_DEL [dm6]	AAC	A	4.454e^-5	0.875	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10348593	2R_10348593_SNP [dm3] 2R_14461088_SNP [dm6]	G	T	4.476e^-5	0.875	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	7882834	3L_7882834_SNP [dm3] 3L_7889734_SNP [dm6]	G	A	4.618e^-5	0.875	INTRON CG32365	TF binding site BDTNP1_TFBS_dl
3R	25933214	3R_25933214_SNP [dm3] 3R_30107492_SNP [dm6]	T	A	4.693e^-5	0.875	INTRON sima
2L	1135277	2L_1135277_SNP [dm3] 2L_1135277_SNP [dm6]	C	T	4.805e^-5	0.875	INTRON CG4577	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6298804	3R_6298804_SNP [dm3] 3R_10473082_SNP [dm6]	A	C	4.928e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17497989	3R_17497989_SNP [dm3] 3R_21672267_SNP [dm6]	G	A	4.969e^-5	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17550468	3R_17550468_SNP [dm3] 3R_21724746_SNP [dm6]	A	T	5.004e^-5	0.875	INTERGENIC
2L	9196795	2L_9196795_SNP [dm3] 2L_9196795_SNP [dm6]	C	G	5.084e^-5	0.875	INTRON tai
3R	17498949	3R_17498949_SNP [dm3] 3R_21673227_SNP [dm6]	G	T	5.104e^-5	0.875	INTRON CG31176
X	18251508	X_18251508_DEL [dm3] X_18357475_DEL [dm6]	TATGTGAATGAGTT...	A	5.282e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16880933	3R_16880933_DEL [dm3] 3R_21055211_DEL [dm6]	AA	A	5.351e^-5	0.875	INTRON Mvl
3R	17498869	3R_17498869_SNP [dm3] 3R_21673147_SNP [dm6]	A	G	5.425e^-5	0.875	INTRON CG31176
2L	1904738	2L_1904738_SNP [dm3] 2L_1904738_SNP [dm6]	A	T	5.472e^-5	0.875	INTRON CG7337
X	10918251	X_10918251_DEL [dm3] X_11024218_DEL [dm6]	AAATCAA	A	5.558e^-5	0.875	INTRON CG42339
3R	21591151	3R_21591151_SNP [dm3] 3R_25765429_SNP [dm6]	A	C	5.568e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_inv
X	11438409	X_11438409_SNP [dm3] X_11544376_SNP [dm6]	T	C	5.589e^-5	0.875	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17280592	2R_17280592_SNP [dm3] 2R_21393087_SNP [dm6]	T	G	5.618e^-5	0.875	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
2L	9646258	2L_9646258_SNP [dm3] 2L_9646258_SNP [dm6]	T	C	5.646e^-5	0.875	SPLICE_SITE_REGION Apoltp INTRON Apoltp
2L	61797	2L_61797_SNP [dm3] 2L_61797_SNP [dm6]	G	C	5.686e^-5	0.875	INTRON Cda5
3L	18433334	3L_18433334_SNP [dm3] 3L_18440234_SNP [dm6]	G	A	5.709e^-5	0.875	UPSTREAM CR43280 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18433330	3L_18433330_SNP [dm3] 3L_18440230_SNP [dm6]	A	T	5.756e^-5	0.875	UPSTREAM CR43280 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17858233	3R_17858233_SNP [dm3] 3R_22032511_SNP [dm6]	G	A	5.760e^-5	0.875	SYNONYMOUS_CODING CG6015 UTR_3_PRIME CG45099 UPSTREAM CG13409	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4271909	3R_4271909_SNP [dm3] 3R_8446187_SNP [dm6]	C	G	5.785e^-5	0.875	INTRON CG45263
2L	561822	2L_561822_SNP [dm3] 2L_561822_SNP [dm6]	T	C	5.795e^-5	0.875	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3R	17498912	3R_17498912_DEL [dm3] 3R_21673190_DEL [dm6]	ACATTGCTTGCTTA...	A	5.823e^-5	0.875	INTRON CG31176
3R	17497907	3R_17497907_SNP [dm3] 3R_21672185_SNP [dm6]	T	A	5.887e^-5	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8263	2L_8263_SNP [dm3] 2L_8263_SNP [dm6]	G	A	5.951e^-5	0.875	NON_SYNONYMOUS_CODING CG11023
2L	7682460	2L_7682460_SNP [dm3] 2L_7682460_SNP [dm6]	A	G	5.972e^-5	0.875	SYNONYMOUS_CODING Myo28B1
3R	17550466	3R_17550466_SNP [dm3] 3R_21724744_SNP [dm6]	C	G	6.085e^-5	0.875	INTERGENIC
3R	26897523	3R_26897523_SNP [dm3] 3R_31071801_SNP [dm6]	A	T	6.166e^-5	0.875	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	9866985	3R_9866985_SNP [dm3] 3R_14041263_SNP [dm6]	C	G	6.176e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8338900	3L_8338900_SNP [dm3] 3L_8345800_SNP [dm6]	A	C	6.233e^-5	0.875	SYNONYMOUS_CODING CG7182 UPSTREAM GAPcenA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18881565	2R_18881565_SNP [dm3] 2R_22994042_SNP [dm6]	T	A	6.403e^-5	0.875	UTR_3_PRIME CG9896 INTRON twi
3R	26960433	3R_26960433_DEL [dm3] 3R_31134711_DEL [dm6]	TT	T	6.436e^-5	0.875	INTRON Gycbeta100B
3L	7580716	3L_7580716_SNP [dm3] 3L_7587616_SNP [dm6]	C	T	6.454e^-5	0.875	DOWNSTREAM CG14838 & 1 other INTERGENIC
2R	15157010	2R_15157010_INS [dm3] 2R_19269505_INS [dm6]	A	AGAATATA	6.459e^-5	0.875	UPSTREAM rib INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22951662	3R_22951662_SNP [dm3] 3R_27125940_SNP [dm6]	C	G	6.478e^-5	0.875	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1611015	2L_1611015_SNP [dm3] 2L_1611015_SNP [dm6]	G	C	6.481e^-5	0.875	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	18251504	X_18251504_SNP [dm3] X_18357471_SNP [dm6]	G	A	6.522e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24180501	3R_24180501_SNP [dm3] 3R_28354779_SNP [dm6]	C	T	6.524e^-5	0.875	INTERGENIC
3R	18091272	3R_18091272_SNP [dm3] 3R_22265550_SNP [dm6]	A	T	6.544e^-5	0.875	INTRON SKIP
3R	19338311	3R_19338311_DEL [dm3] 3R_23512589_DEL [dm6]	TACAAT	T	6.563e^-5	0.875	INTERGENIC
2L	9203084	2L_9203084_SNP [dm3] 2L_9203084_SNP [dm6]	T	C	6.566e^-5	0.875	INTRON tai	TF binding site mE1_TFBS_Trl
3L	1590098	3L_1590098_SNP [dm3] 3L_1590098_SNP [dm6]	T	C	6.607e^-5	0.875	INTRON CG13917
3L	647072	3L_647072_SNP [dm3] 3L_647072_SNP [dm6]	A	C	6.642e^-5	0.875	INTERGENIC
2L	15341483	2L_15341483_SNP [dm3] 2L_15341483_SNP [dm6]	G	T	6.672e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8060442	2L_8060442_SNP [dm3] 2L_8060442_SNP [dm6]	C	A	6.701e^-5	0.875	SYNONYMOUS_CODING poe
3L	8795300	3L_8795300_SNP [dm3] 3L_8802200_SNP [dm6]	T	A	6.716e^-5	0.875	UPSTREAM CG34426 & 1 other INTERGENIC
3L	6992108	3L_6992108_SNP [dm3] 3L_6999008_SNP [dm6]	G	A	6.721e^-5	0.875	INTRON Mp
X	1688202	X_1688202_SNP [dm3] X_1794169_SNP [dm6]	A	G	6.819e^-5	0.875	INTRON CG42666	TF binding site BDTNP1_TFBS_dl
3R	23777007	3R_23777007_SNP [dm3] 3R_27951285_SNP [dm6]	A	G	6.922e^-5	0.875	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24180512	3R_24180512_SNP [dm3] 3R_28354790_SNP [dm6]	T	C	6.959e^-5	0.875	INTERGENIC
2L	7757532	2L_7757532_SNP [dm3] 2L_7757532_SNP [dm6]	A	T	6.965e^-5	0.875	DOWNSTREAM CG14538 INTRON CG7196
X	18251505	X_18251505_SNP [dm3] X_18357472_SNP [dm6]	G	T	6.969e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12574227	3R_12574227_SNP [dm3] 3R_16748505_SNP [dm6]	T	C	6.997e^-5	0.875	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	43102	2L_43102_SNP [dm3] 2L_43102_SNP [dm6]	A	G	7.046e^-5	0.875	INTRON Cda5	TF binding site BDTNP1_TFBS_dl
2L	7757195	2L_7757195_INS [dm3] 2L_7757195_INS [dm6]	T	TGCCTT	7.123e^-5	0.875	DOWNSTREAM CG14538 INTRON CG7196
2L	1610949	2L_1610949_SNP [dm3] 2L_1610949_SNP [dm6]	G	A	7.182e^-5	0.875	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4408560	2L_4408560_SNP [dm3] 2L_4408560_SNP [dm6]	A	T	7.266e^-5	0.875	INTRON CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6494113	3L_6494113_SNP [dm3] 3L_6501013_SNP [dm6]	G	A	7.293e^-5	0.875	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	16624826	3R_16624826_SNP [dm3] 3R_20799104_SNP [dm6]	T	C	7.313e^-5	0.875	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21860391	X_21860391_SNP [dm3] X_22458555_SNP [dm6]	C	T	7.370e^-5	0.875	INTRON CG14619
3L	8338930	3L_8338930_SNP [dm3] 3L_8345830_SNP [dm6]	G	T	7.439e^-5	0.875	SYNONYMOUS_CODING CG7182 UPSTREAM GAPcenA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14464613	3R_14464613_SNP [dm3] 3R_18638891_SNP [dm6]	T	C	7.517e^-5	0.875	INTRON qin & 1 other
3R	14464615	3R_14464615_SNP [dm3] 3R_18638893_SNP [dm6]	C	A	7.517e^-5	0.875	INTRON qin & 1 other
3R	14464637	3R_14464637_SNP [dm3] 3R_18638915_SNP [dm6]	A	G	7.517e^-5	0.875	INTRON qin & 1 other
3R	14464638	3R_14464638_SNP [dm3] 3R_18638916_SNP [dm6]	A	G	7.517e^-5	0.875	INTRON qin & 1 other
3R	16027486	3R_16027486_DEL [dm3] 3R_20201764_DEL [dm6]	TC	T	7.544e^-5	0.875	INTERGENIC
X	6387107	X_6387107_SNP [dm3] X_6493074_SNP [dm6]	T	A	7.558e^-5	0.875	INTRON CG42340
3L	7533468	3L_7533468_SNP [dm3] 3L_7540368_SNP [dm6]	T	C	7.570e^-5	0.875	SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf
3R	17497914	3R_17497914_DEL [dm3] 3R_21672192_DEL [dm6]	AGTGGATCACA...	A	7.625e^-5	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20907251	3R_20907251_SNP [dm3] 3R_25081529_SNP [dm6]	T	C	7.699e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	150932	2L_150932_SNP [dm3] 2L_150932_SNP [dm6]	T	G	7.704e^-5	0.875	INTRON CG11455 & 1 other
3R	13796692	3R_13796692_SNP [dm3] 3R_17970970_SNP [dm6]	T	C	7.842e^-5	0.875	INTRON cpo
2L	7713170	2L_7713170_SNP [dm3] 2L_7713170_SNP [dm6]	A	G	7.909e^-5	0.875	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
3L	18835218	3L_18835218_SNP [dm3] 3L_18842118_SNP [dm6]	T	G	7.913e^-5	0.875	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7805460	3L_7805460_SNP [dm3] 3L_7812360_SNP [dm6]	G	T	7.916e^-5	0.875	UTR_3_PRIME Pdp1
3L	561566	3L_561566_SNP [dm3] 3L_561566_SNP [dm6]	C	A	7.934e^-5	0.875	INTRON hipk	TF binding site BDTNP1_TFBS_twi
3R	26246660	3R_26246660_SNP [dm3] 3R_30420938_SNP [dm6]	A	G	7.947e^-5	0.875	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	9866983	3R_9866983_SNP [dm3] 3R_14041261_SNP [dm6]	T	A	7.966e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17280240	2R_17280240_SNP [dm3] 2R_21392735_SNP [dm6]	T	G	8.018e^-5	0.875	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
3R	15627022	3R_15627022_SNP [dm3] 3R_19801300_SNP [dm6]	C	G	8.026e^-5	0.875	INTRON bnl	TF binding site mE1_TFBS_inv
2L	9203070	2L_9203070_INS [dm3] 2L_9203070_INS [dm6]	A	ATGCA	8.028e^-5	0.875	INTRON tai	TF binding site mE1_TFBS_Trl
2L	4080036	2L_4080036_SNP [dm3] 2L_4080036_SNP [dm6]	A	G	8.077e^-5	0.875	INTRON ed
2L	6108529	2L_6108529_SNP [dm3] 2L_6108529_SNP [dm6]	A	T	8.254e^-5	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	18176809	X_18176809_DEL [dm3] X_18282776_DEL [dm6]	CGATGG	T	8.275e^-5	0.875	INTRON upd3	TF binding site BDTNP1_TFBS_dl
2R	18132331	2R_18132331_SNP [dm3] 2R_22244826_SNP [dm6]	A	C	8.305e^-5	0.875	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9202958	2L_9202958_SNP [dm3] 2L_9202958_SNP [dm6]	T	G	8.384e^-5	0.875	INTRON tai
3R	15549195	3R_15549195_SNP [dm3] 3R_19723473_SNP [dm6]	A	G	8.392e^-5	0.875	INTERGENIC
3R	19338319	3R_19338319_SNP [dm3] 3R_23512597_SNP [dm6]	T	G	8.415e^-5	0.875	INTERGENIC
3R	26955130	3R_26955130_SNP [dm3] 3R_31129408_SNP [dm6]	T	C	8.554e^-5	0.875	NON_SYNONYMOUS_CODING CG15556
2L	11126881	2L_11126881_SNP [dm3] 2L_11126881_SNP [dm6]	T	A	8.658e^-5	0.875	INTRON Nup160
2R	17265383	2R_17265383_SNP [dm3] 2R_21377878_SNP [dm6]	T	C	8.697e^-5	0.875	INTRON cv-2
X	12459638	X_12459638_DEL [dm3] X_12565605_DEL [dm6]	TT	T	8.754e^-5	0.875	UTR_5_PRIME CG43921	TF binding site mE1_TFBS_kn
2L	9646504	2L_9646504_SNP [dm3] 2L_9646504_SNP [dm6]	C	G	8.777e^-5	0.875	INTRON Apoltp
3R	17727737	3R_17727737_SNP [dm3] 3R_21902015_SNP [dm6]	A	G	8.832e^-5	0.875	INTRON CG6678
3L	13769844	3L_13769844_SNP [dm3] 3L_13776744_SNP [dm6]	T	C	8.845e^-5	0.875	INTRON bru-3
3R	15637850	3R_15637850_SNP [dm3] 3R_19812128_SNP [dm6]	C	T	8.848e^-5	0.875	INTRON bnl
3L	5026867	3L_5026867_SNP [dm3] 3L_5026867_SNP [dm6]	A	T	8.880e^-5	0.875	INTRON Con
2L	836453	2L_836453_SNP [dm3] 2L_836453_SNP [dm6]	C	G	9.042e^-5	0.875	INTRON drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26572579	3R_26572579_SNP [dm3] 3R_30746857_SNP [dm6]	A	G	9.118e^-5	0.875	UPSTREAM Npc2h EXON CR43238
2L	1623737	2L_1623737_DEL [dm3] 2L_1623737_DEL [dm6]	AT	G	9.345e^-5	0.875	UPSTREAM CR44603 EXON CR44603
2R	13931804	2R_13931804_SNP [dm3] 2R_18044299_SNP [dm6]	T	G	9.361e^-5	0.875	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
X	16349722	X_16349722_DEL [dm3] X_16455689_DEL [dm6]	TT	T	9.469e^-5	0.875	UTR_3_PRIME para DOWNSTREAM Rbp2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	4435060	2L_4435060_SNP [dm3] 2L_4435060_SNP [dm6]	A	T	9.590e^-5	0.875	DOWNSTREAM CG34177 & 1 other INTRON CG15431
3L	18099710	3L_18099710_DEL [dm3] 3L_18106610_DEL [dm6]	TT	T	9.680e^-5	0.875	UTR_5_PRIME mRpS26 UPSTREAM CG13698	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8022893	3L_8022893_SNP [dm3] 3L_8029793_SNP [dm6]	A	T	9.724e^-5	0.875	INTRON nmo
X	13682885	X_13682885_SNP [dm3] X_13788852_SNP [dm6]	C	T	9.735e^-5	0.875	INTRON inaE
2L	39030	2L_39030_DEL [dm3] 2L_39030_DEL [dm6]	TCTGTA	T	9.963e^-5	0.875	INTRON Cda5
3L	18829819	3L_18829819_SNP [dm3] 3L_18836719_SNP [dm6]	T	C	9.986e^-5	0.875	INTRON Indy	TF binding site mE1_TFBS_zfh1
3L	22141038	3L_22141038_SNP [dm3] 3L_22147938_SNP [dm6]	A	C	1.014e^-4	0.875	INTRON olf413	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	19312835	3L_19312835_INS [dm3] 3L_19319735_INS [dm6]	C	GG	1.017e^-4	0.875	INTRON pip
2R	14716520	2R_14716520_SNP [dm3] 2R_18829015_SNP [dm6]	G	C	1.022e^-4	0.875	INTRON CG15097
3L	10776495	3L_10776495_DEL [dm3] 3L_10783395_DEL [dm6]	AA	A	1.023e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_inv
3R	7138798	3R_7138798_SNP [dm3] 3R_11313076_SNP [dm6]	G	A	1.027e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13631642	X_13631642_SNP [dm3] X_13737609_SNP [dm6]	A	G	1.030e^-4	0.875	SYNONYMOUS_CODING Grip91 UPSTREAM CG11134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5108349	X_5108349_SNP [dm3] X_5214316_SNP [dm6]	G	T	1.033e^-4	0.875	INTRON CG15465 & 1 other
3R	25972368	3R_25972368_SNP [dm3] 3R_30146646_SNP [dm6]	G	A	1.034e^-4	0.875	INTRON AdoR
3L	16266157	3L_16266157_SNP [dm3] 3L_16273057_SNP [dm6]	C	A	1.034e^-4	0.875	INTRON CG13066
3L	11171447	3L_11171447_SNP [dm3] 3L_11178347_SNP [dm6]	T	A	1.041e^-4	0.875	UTR_3_PRIME GlcAT-P
3L	9808435	3L_9808435_SNP [dm3] 3L_9815335_SNP [dm6]	A	C	1.045e^-4	0.875	UPSTREAM CG43897 INTRON CG43897
X	8628194	X_8628194_INS [dm3] X_8734161_INS [dm6]	C	CACAC	1.049e^-4	0.875	INTERGENIC
3R	24180485	3R_24180485_SNP [dm3] 3R_28354763_SNP [dm6]	C	T	1.055e^-4	0.875	INTERGENIC
3L	22149731	3L_22149731_SNP [dm3] 3L_22156631_SNP [dm6]	C	T	1.055e^-4	0.875	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16350538	X_16350538_SNP [dm3] X_16456505_SNP [dm6]	T	G	1.066e^-4	0.875	UTR_3_PRIME para	TF binding site BDTNP1_TFBS_dl
3L	1590093	3L_1590093_SNP [dm3] 3L_1590093_SNP [dm6]	T	G	1.067e^-4	0.875	INTRON CG13917
3L	8338906	3L_8338906_SNP [dm3] 3L_8345806_SNP [dm6]	C	G	1.067e^-4	0.875	SYNONYMOUS_CODING CG7182 UPSTREAM GAPcenA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3957508	2L_3957508_SNP [dm3] 2L_3957508_SNP [dm6]	C	T	1.069e^-4	0.875	INTRON fred
3R	2841407	3R_2841407_SNP [dm3] 3R_7015685_SNP [dm6]	G	T	1.071e^-4	0.875	INTERGENIC
X	17368637	X_17368637_SNP [dm3] X_17474604_SNP [dm6]	C	T	1.072e^-4	0.875	INTRON CG43658
3L	956807	3L_956807_SNP [dm3] 3L_956807_SNP [dm6]	G	C	1.073e^-4	0.875	INTRON Glut1
3R	12206366	3R_12206366_SNP [dm3] 3R_16380644_SNP [dm6]	C	T	1.074e^-4	0.875	INTRON ss
X	13574001	X_13574001_SNP [dm3] X_13679968_SNP [dm6]	T	C	1.074e^-4	0.875	SYNONYMOUS_CODING CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5542339	X_5542339_SNP [dm3] X_5648306_SNP [dm6]	A	T	1.082e^-4	0.875	INTRON CG42492
3R	10273710	3R_10273710_SNP [dm3] 3R_14447988_SNP [dm6]	T	C	1.088e^-4	0.875	INTRON cv-c
3R	15891264	3R_15891264_SNP [dm3] 3R_20065542_SNP [dm6]	G	A	1.093e^-4	0.875	INTERGENIC
2R	17829514	2R_17829514_SNP [dm3] 2R_21942009_SNP [dm6]	C	T	1.096e^-4	0.875	INTRON Fili	TF binding site mE1_TFBS_cad
2L	1623763	2L_1623763_SNP [dm3] 2L_1623763_SNP [dm6]	G	A	1.100e^-4	0.875	UPSTREAM CR44603 EXON CR44603
3L	9106078	3L_9106078_SNP [dm3] 3L_9112978_SNP [dm6]	T	A	1.106e^-4	0.875	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9201956	2L_9201956_SNP [dm3] 2L_9201956_SNP [dm6]	A	G	1.110e^-4	0.875	INTRON tai
3R	17499734	3R_17499734_SNP [dm3] 3R_21674012_SNP [dm6]	C	T	1.112e^-4	0.875	INTRON CG31176
3R	25210187	3R_25210187_SNP [dm3] 3R_29384465_SNP [dm6]	G	T	1.115e^-4	0.875	INTRON Ptp99A
2L	9665923	2L_9665923_SNP [dm3] 2L_9665923_SNP [dm6]	C	T	1.131e^-4	0.875	INTERGENIC
2L	3886977	2L_3886977_SNP [dm3] 2L_3886977_SNP [dm6]	T	A	1.133e^-4	0.875	SPLICE_SITE_REGION capu INTRON capu
2L	7762987	2L_7762987_SNP [dm3] 2L_7762987_SNP [dm6]	C	T	1.138e^-4	0.875	INTRON CG7196
2L	7758095	2L_7758095_SNP [dm3] 2L_7758095_SNP [dm6]	A	C	1.142e^-4	0.875	INTRON CG7196
3L	19222597	3L_19222597_SNP [dm3] 3L_19229497_SNP [dm6]	G	A	1.147e^-4	0.875	INTRON fz2 EXON CR43893
3L	8860584	3L_8860584_SNP [dm3] 3L_8867484_SNP [dm6]	A	T	1.148e^-4	0.875	INTRON dally
3R	25985501	3R_25985501_SNP [dm3] 3R_30159779_SNP [dm6]	A	T	1.154e^-4	0.875	INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16493956	3R_16493956_SNP [dm3] 3R_20668234_SNP [dm6]	C	T	1.155e^-4	0.875	INTERGENIC
2R	8879705	2R_8879705_SNP [dm3] 2R_12992200_SNP [dm6]	G	T	1.165e^-4	0.875	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22158311	3L_22158311_SNP [dm3] 3L_22165211_SNP [dm6]	T	C	1.181e^-4	0.875	INTRON olf413	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
2L	9646212	2L_9646212_SNP [dm3] 2L_9646212_SNP [dm6]	G	T	1.183e^-4	0.875	INTRON Apoltp
2L	19219145	2L_19219145_SNP [dm3] 2L_19219145_SNP [dm6]	G	C	1.183e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18835266	3L_18835266_SNP [dm3] 3L_18842166_SNP [dm6]	G	A	1.187e^-4	0.875	UPSTREAM Indy INTRON Indy & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20401960	X_20401960_SNP [dm3] X_20530933_SNP [dm6]	A	T	1.188e^-4	0.875	INTERGENIC
3R	14020136	3R_14020136_SNP [dm3] 3R_18194414_SNP [dm6]	A	C	1.195e^-4	0.875	UTR_3_PRIME Ssdp DOWNSTREAM Ssdp
3L	9353094	3L_9353094_SNP [dm3] 3L_9359994_SNP [dm6]	A	C	1.199e^-4	0.875	UTR_3_PRIME CG32039 UPSTREAM CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21643838	3L_21643838_SNP [dm3] 3L_21650738_SNP [dm6]	G	T	1.200e^-4	0.875	INTRON CG43980
2L	140689	2L_140689_SNP [dm3] 2L_140689_SNP [dm6]	T	C	1.200e^-4	0.875	NON_SYNONYMOUS_CODING CG31975 UTR_5_PRIME CG31976 DOWNSTREAM CG31974 INTRON CG11455
2L	8835137	2L_8835137_SNP [dm3] 2L_8835137_SNP [dm6]	G	A	1.206e^-4	0.875	INTERGENIC
3L	7821406	3L_7821406_INS [dm3] 3L_7828306_INS [dm6]	T	TT	1.208e^-4	0.875	UPSTREAM Pdp1 INTRON Pdp1
3L	6110796	3L_6110796_SNP [dm3] 3L_6117696_SNP [dm6]	C	T	1.212e^-4	0.875	INTRON Ets65A
X	22051181	X_22051181_SNP [dm3] X_22649345_SNP [dm6]	G	T	1.214e^-4	0.875	INTERGENIC
2R	17826372	2R_17826372_SNP [dm3] 2R_21938867_SNP [dm6]	C	T	1.215e^-4	0.875	INTRON Fili
X	18251198	X_18251198_SNP [dm3] X_18357165_SNP [dm6]	A	C	1.219e^-4	0.875	UPSTREAM CG6123 INTERGENIC
2L	7763215	2L_7763215_SNP [dm3] 2L_7763215_SNP [dm6]	C	A	1.219e^-4	0.875	INTRON CG7196
3L	16929539	3L_16929539_INS [dm3] 3L_16936439_INS [dm6]	A	AAA	1.221e^-4	0.875	UPSTREAM CG11905 INTERGENIC
2L	9112617	2L_9112617_SNP [dm3] 2L_9112617_SNP [dm6]	C	T	1.226e^-4	0.875	SYNONYMOUS_CODING Or30a
2L	1890502	2L_1890502_SNP [dm3] 2L_1890502_SNP [dm6]	T	A	1.228e^-4	0.875	INTRON CG7337
3R	17529913	3R_17529913_SNP [dm3] 3R_21704191_SNP [dm6]	G	A	1.238e^-4	0.875	INTRON CG31176
3L	7805225	3L_7805225_SNP [dm3] 3L_7812125_SNP [dm6]	G	T	1.248e^-4	0.875	UTR_3_PRIME Pdp1
3R	15627108	3R_15627108_SNP [dm3] 3R_19801386_SNP [dm6]	A	T	1.248e^-4	0.875	INTRON bnl	TF binding site mE1_TFBS_inv
3R	7702810	3R_7702810_SNP [dm3] 3R_11877088_SNP [dm6]	G	A	1.248e^-4	0.875	UPSTREAM sad INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8532090	2L_8532090_SNP [dm3] 2L_8532090_SNP [dm6]	C	A	1.250e^-4	0.875	INTRON CG17834
3R	17498151	3R_17498151_SNP [dm3] 3R_21672429_SNP [dm6]	A	T	1.256e^-4	0.875	UTR_3_PRIME CG31176 UPSTREAM DNApol-alpha180	TF binding site BDTNP1_TFBS_dl
2L	1129613	2L_1129613_SNP [dm3] 2L_1129613_SNP [dm6]	C	A	1.262e^-4	0.875	UPSTREAM Pino INTRON CG4552	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14113224	3L_14113224_SNP [dm3] 3L_14120124_SNP [dm6]	G	T	1.262e^-4	0.875	INTRON Sox21b	TF binding site mE1_TFBS_inv
3R	17497118	3R_17497118_SNP [dm3] 3R_21671396_SNP [dm6]	A	G	1.264e^-4	0.875	SYNONYMOUS_CODING DNApol-alpha180 DOWNSTREAM CG31176	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21845170	3R_21845170_SNP [dm3] 3R_26019448_SNP [dm6]	T	C	1.274e^-4	0.875	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25261178	3R_25261178_SNP [dm3] 3R_29435456_SNP [dm6]	G	T	1.278e^-4	0.875	INTRON Ptp99A
2L	9112586	2L_9112586_SNP [dm3] 2L_9112586_SNP [dm6]	A	G	1.280e^-4	0.875	NON_SYNONYMOUS_CODING Or30a
X	6387069	X_6387069_SNP [dm3] X_6493036_SNP [dm6]	T	A	1.287e^-4	0.875	INTRON CG42340
X	21154806	X_21154806_SNP [dm3] X_21283779_SNP [dm6]	G	T	1.291e^-4	0.875	INTERGENIC
3R	22986490	3R_22986490_INS [dm3] 3R_27160768_INS [dm6]	C	TT	1.294e^-4	0.875	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
2L	1238729	2L_1238729_SNP [dm3] 2L_1238729_SNP [dm6]	C	G	1.297e^-4	0.875	INTERGENIC
3R	16503242	3R_16503242_SNP [dm3] 3R_20677520_SNP [dm6]	G	A	1.300e^-4	0.875	UPSTREAM CR43452 & 1 other EXON CR45024
X	11438550	X_11438550_SNP [dm3] X_11544517_SNP [dm6]	G	T	1.317e^-4	0.875	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20256860	3R_20256860_SNP [dm3] 3R_24431138_SNP [dm6]	T	C	1.332e^-4	0.875	INTRON nAChRalpha1
X	6387118	X_6387118_SNP [dm3] X_6493085_SNP [dm6]	T	C	1.335e^-4	0.875	INTRON CG42340
3L	10281237	3L_10281237_SNP [dm3] 3L_10288137_SNP [dm6]	T	C	1.337e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12630778	X_12630778_SNP [dm3] X_12736745_SNP [dm6]	C	G	1.337e^-4	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
2R	13140124	2R_13140124_INS [dm3] 2R_17252619_INS [dm6]	A	AGTTAA	1.353e^-4	0.875	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	2212069	2L_2212069_SNP [dm3] 2L_2212069_SNP [dm6]	A	G	1.353e^-4	0.875	SYNONYMOUS_CODING CG15385 DOWNSTREAM Uch	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10348388	2R_10348388_SNP [dm3] 2R_14460883_SNP [dm6]	C	T	1.359e^-4	0.875	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	17277426	2R_17277426_SNP [dm3] 2R_21389921_SNP [dm6]	C	A	1.360e^-4	0.875	DOWNSTREAM Acox57D-p INTRON Acox57D-d
3L	1881192	3L_1881192_SNP [dm3] 3L_1881192_SNP [dm6]	G	A	1.361e^-4	0.875	SYNONYMOUS_CODING CG13937	TF binding site mE1_TFBS_chinmo
3R	19338364	3R_19338364_SNP [dm3] 3R_23512642_SNP [dm6]	G	C	1.367e^-4	0.875	DOWNSTREAM Irk2 INTERGENIC
3L	18841043	3L_18841043_SNP [dm3] 3L_18847943_SNP [dm6]	G	C	1.368e^-4	0.875	INTERGENIC	transposable element FlyBase
3R	16240761	3R_16240761_SNP [dm3] 3R_20415039_SNP [dm6]	G	T	1.368e^-4	0.875	INTRON Gfrl
2L	7683476	2L_7683476_SNP [dm3] 2L_7683476_SNP [dm6]	A	G	1.380e^-4	0.875	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16057846	3R_16057846_DEL [dm3] 3R_20232124_DEL [dm6]	TT	T	1.383e^-4	0.875	INTRON Nlg4
3R	14315640	3R_14315640_SNP [dm3] 3R_18489918_SNP [dm6]	T	A	1.394e^-4	0.875	INTRON fru	TF binding site mE1_TFBS_cad
X	8121893	X_8121893_SNP [dm3] X_8227860_SNP [dm6]	A	T	1.399e^-4	0.875	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	14315618	3R_14315618_INS [dm3] 3R_18489896_INS [dm6]	T	TGATGC	1.400e^-4	0.875	INTRON fru
3L	16929443	3L_16929443_SNP [dm3] 3L_16936343_SNP [dm6]	A	G	1.420e^-4	0.875	UPSTREAM CG11905 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13140149	2R_13140149_SNP [dm3] 2R_17252644_SNP [dm6]	T	A	1.426e^-4	0.875	INTRON mbl	TF binding site BDTNP1_TFBS_twi
X	8397754	X_8397754_SNP [dm3] X_8503721_SNP [dm6]	A	G	1.427e^-4	0.875	INTRON CG33181
3L	9357319	3L_9357319_DEL [dm3] 3L_9364219_DEL [dm6]	TTAT	T	1.428e^-4	0.875	UPSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_HSA
X	5542826	X_5542826_SNP [dm3] X_5648793_SNP [dm6]	T	A	1.431e^-4	0.875	UPSTREAM CG42492 INTERGENIC
3L	959839	3L_959839_DEL [dm3] 3L_959839_DEL [dm6]	GCTGGTA	G	1.437e^-4	0.875	SPLICE_SITE_DONOR Glut1 SPLICE_SITE_REGION Glut1 UTR_5_PRIME Glut1 INTRON Glut1	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	713622	X_713622_SNP [dm3] X_819589_SNP [dm6]	G	T	1.438e^-4	0.875	SYNONYMOUS_CODING CG43867
3L	19315411	3L_19315411_SNP [dm3] 3L_19322311_SNP [dm6]	C	T	1.448e^-4	0.875	INTRON pip
3R	4106740	3R_4106740_SNP [dm3] 3R_8281018_SNP [dm6]	C	A	1.453e^-4	0.875	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	22055797	X_22055797_SNP [dm3] X_22653961_SNP [dm6]	A	G	1.465e^-4	0.875	INTERGENIC	transposable element FlyBase
X	22054081	X_22054081_SNP [dm3] X_22652245_SNP [dm6]	C	G	1.472e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15951909	3R_15951909_SNP [dm3] 3R_20126187_SNP [dm6]	A	G	1.476e^-4	0.875	INTERGENIC
X	19617905	X_19617905_SNP [dm3] X_19723872_SNP [dm6]	C	T	1.477e^-4	0.875	SPLICE_SITE_REGION CG12531 INTRON CG12531
X	22053548	X_22053548_SNP [dm3] X_22651712_SNP [dm6]	T	A	1.477e^-4	0.875	INTERGENIC
2L	5372	2L_5372_SNP [dm3] 2L_5372_SNP [dm6]	T	A	1.488e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8339391	3L_8339391_SNP [dm3] 3L_8346291_SNP [dm6]	T	A	1.494e^-4	0.875	START_GAINED CG7182 UTR_5_PRIME CG7182 UPSTREAM GAPcenA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4372678	2L_4372678_SNP [dm3] 2L_4372678_SNP [dm6]	G	A	1.496e^-4	0.875	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	8415875	3L_8415875_SNP [dm3] 3L_8422775_SNP [dm6]	A	G	1.497e^-4	0.875	UPSTREAM CG32354 INTERGENIC
3R	18235848	3R_18235848_SNP [dm3] 3R_22410126_SNP [dm6]	C	G	1.504e^-4	0.875	NON_SYNONYMOUS_CODING CG13850	TF binding site mE1_TFBS_sens
3L	3353508	3L_3353508_SNP [dm3] 3L_3353508_SNP [dm6]	C	T	1.504e^-4	0.875	INTRON kst	TF binding site mE1_TFBS_cad
3R	26241099	3R_26241099_DEL [dm3] 3R_30415377_DEL [dm6]	CA	T	1.505e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9566334	2R_9566334_SNP [dm3] 2R_13678829_SNP [dm6]	G	A	1.518e^-4	0.875	INTRON fas
2L	9101879	2L_9101879_SNP [dm3] 2L_9101879_SNP [dm6]	G	C	1.552e^-4	0.875	INTERGENIC
3R	16748487	3R_16748487_SNP [dm3] 3R_20922765_SNP [dm6]	A	T	1.552e^-4	0.875	INTRON CG31191 & 1 other
2L	946545	2L_946545_SNP [dm3] 2L_946545_SNP [dm6]	C	A	1.566e^-4	0.875	INTRON CG4341
2L	9680554	2L_9680554_SNP [dm3] 2L_9680554_SNP [dm6]	C	G	1.570e^-4	0.875	INTERGENIC
2L	663507	2L_663507_SNP [dm3] 2L_663507_SNP [dm6]	A	G	1.571e^-4	0.875	INTRON ds
3R	15637882	3R_15637882_SNP [dm3] 3R_19812160_SNP [dm6]	T	C	1.576e^-4	0.875	INTRON bnl
3R	17564026	3R_17564026_SNP [dm3] 3R_21738304_SNP [dm6]	A	T	1.584e^-4	0.875	UPSTREAM CG42870 DOWNSTREAM CG34034 INTERGENIC
2R	16422764	2R_16422764_SNP [dm3] 2R_20535259_SNP [dm6]	C	A	1.585e^-4	0.875	NON_SYNONYMOUS_CODING CG18067	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7800596	3L_7800596_SNP [dm3] 3L_7807496_SNP [dm6]	G	A	1.595e^-4	0.875	INTRON CG32369	TF binding site mE1_TFBS_Trl
2R	9980804	2R_9980804_SNP [dm3] 2R_14093299_SNP [dm6]	G	T	1.604e^-4	0.875	INTRON Prosap
2R	6851395	2R_6851395_SNP [dm3] 2R_10963890_SNP [dm6]	G	C	1.608e^-4	0.875	INTERGENIC
3R	18691195	3R_18691195_SNP [dm3] 3R_22865473_SNP [dm6]	T	C	1.612e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26895109	3R_26895109_SNP [dm3] 3R_31069387_SNP [dm6]	T	C	1.615e^-4	0.875	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16349994	X_16349994_SNP [dm3] X_16455961_SNP [dm6]	C	T	1.618e^-4	0.875	UTR_3_PRIME para DOWNSTREAM Rbp2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3R	17629650	3R_17629650_SNP [dm3] 3R_21803928_SNP [dm6]	G	A	1.631e^-4	0.875	NON_SYNONYMOUS_CODING CASK INTRON CASK	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7758093	2L_7758093_SNP [dm3] 2L_7758093_SNP [dm6]	C	A	1.632e^-4	0.875	INTRON CG7196
3L	2104943	3L_2104943_SNP [dm3] 3L_2104943_SNP [dm6]	G	T	1.637e^-4	0.875	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
3R	26050437	3R_26050437_SNP [dm3] 3R_30224715_SNP [dm6]	T	A	1.640e^-4	0.875	INTERGENIC
2L	8532096	2L_8532096_SNP [dm3] 2L_8532096_SNP [dm6]	G	A	1.647e^-4	0.875	INTRON CG17834
2L	39037	2L_39037_INS [dm3] 2L_39037_INS [dm6]	A	AGAGCGTAAGAGCGGT...	1.648e^-4	0.875	INTRON Cda5
2L	2292402	2L_2292402_SNP [dm3] 2L_2292402_SNP [dm6]	T	C	1.674e^-4	0.875	INTERGENIC
3L	17684399	3L_17684399_SNP [dm3] 3L_17691299_SNP [dm6]	C	T	1.677e^-4	0.875	INTRON Ccn
2L	1108114	2L_1108114_SNP [dm3] 2L_1108114_SNP [dm6]	G	A	1.685e^-4	0.875	NON_SYNONYMOUS_CODING mtRNApol UPSTREAM CG14339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	10035024	3R_10035024_SNP [dm3] 3R_14209302_SNP [dm6]	T	G	1.685e^-4	0.875	INTRON Dop1R1
3R	10035034	3R_10035034_SNP [dm3] 3R_14209312_SNP [dm6]	T	C	1.689e^-4	0.875	INTRON Dop1R1
2R	14624780	2R_14624780_SNP [dm3] 2R_18737275_SNP [dm6]	A	G	1.696e^-4	0.875	INTRON Hs3st-A	TF binding site mE1_TFBS_kn
2L	135931	2L_135931_SNP [dm3] 2L_135931_SNP [dm6]	A	G	1.699e^-4	0.875	UPSTREAM CR44186 INTRON CG11455 EXON CR44185
2R	9566357	2R_9566357_SNP [dm3] 2R_13678852_SNP [dm6]	T	C	1.705e^-4	0.875	INTRON fas
2L	604805	2L_604805_SNP [dm3] 2L_604805_SNP [dm6]	C	T	1.709e^-4	0.875	DOWNSTREAM CG13689 INTERGENIC
3L	3510398	3L_3510398_SNP [dm3] 3L_3510398_SNP [dm6]	C	G	1.710e^-4	0.875	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3R	26036179	3R_26036179_SNP [dm3] 3R_30210457_SNP [dm6]	C	T	1.710e^-4	0.875	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	73974	2L_73974_SNP [dm3] 2L_73974_SNP [dm6]	A	G	1.711e^-4	0.875	UPSTREAM galectin & 1 other INTRON galectin
3L	17683093	3L_17683093_SNP [dm3] 3L_17689993_SNP [dm6]	T	C	1.715e^-4	0.875	UPSTREAM Ccn INTERGENIC
2R	14396529	2R_14396529_SNP [dm3] 2R_18509024_SNP [dm6]	C	A	1.718e^-4	0.875	INTERGENIC
2L	3386974	2L_3386974_SNP [dm3] 2L_3386974_SNP [dm6]	T	C	1.719e^-4	0.875	DOWNSTREAM Sfp23F & 1 other EXON CR45301
2R	15157071	2R_15157071_SNP [dm3] 2R_19269566_SNP [dm6]	A	G	1.720e^-4	0.875	UPSTREAM rib INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	21613147	3L_21613147_SNP [dm3] 3L_21620047_SNP [dm6]	G	A	1.721e^-4	0.875	UTR_3_PRIME CG7166 DOWNSTREAM CG11307
2L	7763219	2L_7763219_SNP [dm3] 2L_7763219_SNP [dm6]	C	A	1.722e^-4	0.875	INTRON CG7196
3L	9054836	3L_9054836_SNP [dm3] 3L_9061736_SNP [dm6]	G	T	1.726e^-4	0.875	INTRON Argk
2L	7762086	2L_7762086_SNP [dm3] 2L_7762086_SNP [dm6]	G	C	1.729e^-4	0.875	INTRON CG7196
3L	8019230	3L_8019230_SNP [dm3] 3L_8026130_SNP [dm6]	A	T	1.730e^-4	0.875	INTRON nmo
3R	12976269	3R_12976269_SNP [dm3] 3R_17150547_SNP [dm6]	T	C	1.734e^-4	0.875	UPSTREAM CG5285 DOWNSTREAM Det INTERGENIC	TF binding site mE1_TFBS_ttk
3L	12967079	3L_12967079_SNP [dm3] 3L_12973979_SNP [dm6]	C	G	1.743e^-4	0.875	DOWNSTREAM CG10749 INTERGENIC
3L	8849510	3L_8849510_SNP [dm3] 3L_8856410_SNP [dm6]	A	G	1.744e^-4	0.875	INTRON dally
3R	25422937	3R_25422937_SNP [dm3] 3R_29597215_SNP [dm6]	T	C	1.748e^-4	0.875	INTRON alph
2R	12369435	2R_12369435_SNP [dm3] 2R_16481930_SNP [dm6]	T	G	1.750e^-4	0.875	INTERGENIC
3R	16027491	3R_16027491_SNP [dm3] 3R_20201769_SNP [dm6]	T	C	1.752e^-4	0.875	INTERGENIC
2R	18464700	2R_18464700_SNP [dm3] 2R_22577195_SNP [dm6]	C	T	1.756e^-4	0.875	INTRON dnr1
2R	16612393	2R_16612393_SNP [dm3] 2R_20724888_SNP [dm6]	A	T	1.756e^-4	0.875	INTRON dpr
3R	26243339	3R_26243339_SNP [dm3] 3R_30417617_SNP [dm6]	C	A	1.763e^-4	0.875	INTERGENIC
X	18040631	X_18040631_SNP [dm3] X_18146598_SNP [dm6]	G	A	1.766e^-4	0.875	INTERGENIC
3R	8151742	3R_8151742_SNP [dm3] 3R_12326020_SNP [dm6]	G	A	1.784e^-4	0.875	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19895704	2R_19895704_SNP [dm3] 2R_24008181_SNP [dm6]	T	A	1.787e^-4	0.875	INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	4408564	2L_4408564_SNP [dm3] 2L_4408564_SNP [dm6]	T	G	1.799e^-4	0.875	INTRON CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7759939	2L_7759939_SNP [dm3] 2L_7759939_SNP [dm6]	C	G	1.799e^-4	0.875	INTRON CG7196
2R	13140148	2R_13140148_SNP [dm3] 2R_17252643_SNP [dm6]	A	T	1.805e^-4	0.875	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	7759877	2L_7759877_SNP [dm3] 2L_7759877_SNP [dm6]	G	A	1.816e^-4	0.875	INTRON CG7196
2R	11797937	2R_11797937_INS [dm3] 2R_15910432_INS [dm6]	G	GAAGGAG	1.823e^-4	0.875	INTRON sli
2L	1237480	2L_1237480_SNP [dm3] 2L_1237480_SNP [dm6]	G	A	1.825e^-4	0.875	INTERGENIC
2R	13931650	2R_13931650_SNP [dm3] 2R_18044145_SNP [dm6]	G	A	1.832e^-4	0.875	UTR_3_PRIME CG5770 UPSTREAM CG5773
2R	12369260	2R_12369260_SNP [dm3] 2R_16481755_SNP [dm6]	C	T	1.835e^-4	0.875	INTERGENIC
3L	852765	3L_852765_SNP [dm3] 3L_852765_SNP [dm6]	A	T	1.836e^-4	0.875	UTR_3_PRIME dpr20 DOWNSTREAM CG13890
3R	15631706	3R_15631706_SNP [dm3] 3R_19805984_SNP [dm6]	C	T	1.838e^-4	0.875	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6108560	2L_6108560_SNP [dm3] 2L_6108560_SNP [dm6]	T	A	1.841e^-4	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11171448	3L_11171448_SNP [dm3] 3L_11178348_SNP [dm6]	A	G	1.842e^-4	0.875	UTR_3_PRIME GlcAT-P
X	5226612	X_5226612_SNP [dm3] X_5332579_SNP [dm6]	A	G	1.848e^-4	0.875	UPSTREAM CanB DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	836503	2L_836503_SNP [dm3] 2L_836503_SNP [dm6]	G	A	1.855e^-4	0.875	INTRON drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7127599	2R_7127599_SNP [dm3] 2R_11240094_SNP [dm6]	T	A	1.859e^-4	0.875	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
X	19617968	X_19617968_SNP [dm3] X_19723935_SNP [dm6]	C	T	1.861e^-4	0.875	INTRON CG12531
3L	9508421	3L_9508421_SNP [dm3] 3L_9515321_SNP [dm6]	A	C	1.865e^-4	0.875	INTRON CG33700
3R	19341242	3R_19341242_SNP [dm3] 3R_23515520_SNP [dm6]	A	C	1.865e^-4	0.875	INTRON Irk2
3R	13799645	3R_13799645_SNP [dm3] 3R_17973923_SNP [dm6]	T	G	1.876e^-4	0.875	INTRON cpo
2L	7754809	2L_7754809_SNP [dm3] 2L_7754809_SNP [dm6]	T	G	1.877e^-4	0.875	INTRON CG7196
3R	18914453	3R_18914453_SNP [dm3] 3R_23088731_SNP [dm6]	T	C	1.884e^-4	0.875	INTRON CG13830	TF binding site mE1_TFBS_cad
X	16922102	X_16922102_SNP [dm3] X_17028069_SNP [dm6]	T	A	1.891e^-4	0.875	INTRON CG45002
2L	3148174	2L_3148174_SNP [dm3] 2L_3148174_SNP [dm6]	G	A	1.907e^-4	0.875	SYNONYMOUS_CODING Mad
3R	17935131	3R_17935131_SNP [dm3] 3R_22109409_SNP [dm6]	C	T	1.911e^-4	0.875	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17493350	3R_17493350_SNP [dm3] 3R_21667628_SNP [dm6]	C	A	1.917e^-4	0.875	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1629060	X_1629060_SNP [dm3] X_1735027_SNP [dm6]	G	C	1.926e^-4	0.875	DOWNSTREAM Scgdelta INTERGENIC
X	17390192	X_17390192_SNP [dm3] X_17496159_SNP [dm6]	C	T	1.927e^-4	0.875	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	7763229	2L_7763229_SNP [dm3] 2L_7763229_SNP [dm6]	T	A	1.934e^-4	0.875	INTRON CG7196
2L	7762087	2L_7762087_SNP [dm3] 2L_7762087_SNP [dm6]	C	T	1.945e^-4	0.875	INTRON CG7196
3R	2179158	3R_2179158_SNP [dm3] 3R_6353436_SNP [dm6]	C	A	1.949e^-4	0.875	UTR_5_PRIME Pak UPSTREAM Pak INTRON Pak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15626921	3R_15626921_SNP [dm3] 3R_19801199_SNP [dm6]	C	T	1.951e^-4	0.875	INTRON bnl	TF binding site mE1_TFBS_inv
2L	4435050	2L_4435050_SNP [dm3] 2L_4435050_SNP [dm6]	T	C	1.951e^-4	0.875	UTR_3_PRIME CG34177 & 1 other INTRON CG15431
3L	13313102	3L_13313102_SNP [dm3] 3L_13320002_SNP [dm6]	C	T	1.958e^-4	0.875	INTERGENIC
3L	7821347	3L_7821347_SNP [dm3] 3L_7828247_SNP [dm6]	C	T	1.968e^-4	0.875	UPSTREAM Pdp1 INTRON Pdp1
X	12164362	X_12164362_SNP [dm3] X_12270329_SNP [dm6]	T	C	1.973e^-4	0.875	INTRON Ten-a
3L	10825841	3L_10825841_SNP [dm3] 3L_10832741_SNP [dm6]	C	G	1.987e^-4	0.875	INTERGENIC
3R	19649135	3R_19649135_SNP [dm3] 3R_23823413_SNP [dm6]	C	T	1.992e^-4	0.875	INTRON CG34355
3L	10840187	3L_10840187_SNP [dm3] 3L_10847087_SNP [dm6]	C	T	1.993e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1623406	2L_1623406_SNP [dm3] 2L_1623406_SNP [dm6]	C	T	1.995e^-4	0.875	EXON CR44603
2L	5762	2L_5762_SNP [dm3] 2L_5762_SNP [dm6]	T	C	1.996e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18448047	2L_18448047_SNP [dm3] 2L_18448047_SNP [dm6]	C	A	2.000e^-4	0.875	NON_SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5683736	2L_5683736_SNP [dm3] 2L_5683736_SNP [dm6]	G	A	2.007e^-4	0.875	INTERGENIC
3R	16655800	3R_16655800_SNP [dm3] 3R_20830078_SNP [dm6]	G	A	2.016e^-4	0.875	INTRON AdSS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13047926	2R_13047926_SNP [dm3] 2R_17160421_SNP [dm6]	A	G	2.017e^-4	0.875	SYNONYMOUS_CODING CG30457
2L	6108525	2L_6108525_SNP [dm3] 2L_6108525_SNP [dm6]	G	T	2.022e^-4	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	877219	3L_877219_SNP [dm3] 3L_877219_SNP [dm6]	G	T	2.026e^-4	0.875	DOWNSTREAM CG13907 INTRON CG32479
3L	16628758	3L_16628758_SNP [dm3] 3L_16635658_SNP [dm6]	C	T	2.047e^-4	0.875	INTRON Abl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12380190	3R_12380190_SNP [dm3] 3R_16554468_SNP [dm6]	G	A	2.048e^-4	0.875	INTRON CG42342
2R	13931763	2R_13931763_SNP [dm3] 2R_18044258_SNP [dm6]	A	C	2.054e^-4	0.875	UTR_3_PRIME CG5770 UPSTREAM CG5773
3L	19135401	3L_19135401_SNP [dm3] 3L_19142301_SNP [dm6]	C	T	2.059e^-4	0.875	UTR_3_PRIME fz2 DOWNSTREAM fz2	TF binding site BDTNP1_TFBS_dl
3L	619462	3L_619462_SNP [dm3] 3L_619462_SNP [dm6]	A	T	2.069e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	9417863	2L_9417863_SNP [dm3] 2L_9417863_SNP [dm6]	T	C	2.075e^-4	0.875	INTRON Mco1
3R	26241261	3R_26241261_SNP [dm3] 3R_30415539_SNP [dm6]	C	T	2.097e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	20211201	3R_20211201_SNP [dm3] 3R_24385479_SNP [dm6]	C	G	2.098e^-4	0.875	UPSTREAM CG17780 DOWNSTREAM CG5768 INTERGENIC
3R	17498471	3R_17498471_DEL [dm3] 3R_21672749_DEL [dm6]	GTACAGCAAAGCAGATA...	G	2.098e^-4	0.875	UTR_3_PRIME CG31176 UPSTREAM DNApol-alpha180
2L	1238767	2L_1238767_INS [dm3] 2L_1238767_INS [dm6]	A	GTAC	2.100e^-4	0.875	INTERGENIC
3R	23777457	3R_23777457_SNP [dm3] 3R_27951735_SNP [dm6]	G	A	2.103e^-4	0.875	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15985891	2L_15985891_SNP [dm3] 2L_15985891_SNP [dm6]	T	G	2.109e^-4	0.875	INTERGENIC
3R	4222076	3R_4222076_SNP [dm3] 3R_8396354_SNP [dm6]	A	C	2.110e^-4	0.875	INTRON CG45263
2L	9665916	2L_9665916_INS [dm3] 2L_9665916_INS [dm6]	T	AAAG	2.115e^-4	0.875	INTERGENIC
2L	1294598	2L_1294598_SNP [dm3] 2L_1294598_SNP [dm6]	A	T	2.116e^-4	0.875	UTR_3_PRIME robo3
X	19792103	X_19792103_SNP [dm3] X_19898070_SNP [dm6]	T	A	2.128e^-4	0.875	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
2L	6108545	2L_6108545_SNP [dm3] 2L_6108545_SNP [dm6]	A	T	2.132e^-4	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	13033446	3R_13033446_SNP [dm3] 3R_17207724_SNP [dm6]	G	C	2.136e^-4	0.875	INTERGENIC
3R	25832236	3R_25832236_SNP [dm3] 3R_30006514_SNP [dm6]	G	A	2.142e^-4	0.875	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site mE1_TFBS_sens
X	12632170	X_12632170_SNP [dm3] X_12738137_SNP [dm6]	G	A	2.147e^-4	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10940089	3R_10940089_SNP [dm3] 3R_15114367_SNP [dm6]	G	T	2.156e^-4	0.875	INTRON CG42788
2R	13140562	2R_13140562_SNP [dm3] 2R_17253057_SNP [dm6]	A	G	2.160e^-4	0.875	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	836391	2L_836391_SNP [dm3] 2L_836391_SNP [dm6]	T	C	2.160e^-4	0.875	INTRON drongo	TF binding site mE1_TFBS_chinmo
3L	21849543	3L_21849543_SNP [dm3] 3L_21856443_SNP [dm6]	A	T	2.160e^-4	0.875	INTRON mub
3L	18839059	3L_18839059_SNP [dm3] 3L_18845959_SNP [dm6]	T	A	2.162e^-4	0.875	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14904797	2L_14904797_SNP [dm3] 2L_14904797_SNP [dm6]	G	A	2.166e^-4	0.875	INTERGENIC
2R	11677124	2R_11677124_INS [dm3] 2R_15789619_INS [dm6]	A	AA	2.167e^-4	0.875	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	19792110	X_19792110_SNP [dm3] X_19898077_SNP [dm6]	A	T	2.168e^-4	0.875	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
2L	7754885	2L_7754885_SNP [dm3] 2L_7754885_SNP [dm6]	T	G	2.171e^-4	0.875	INTRON CG7196
3L	19221792	3L_19221792_SNP [dm3] 3L_19228692_SNP [dm6]	G	A	2.171e^-4	0.875	UPSTREAM CR43893 INTRON fz2
3L	956703	3L_956703_SNP [dm3] 3L_956703_SNP [dm6]	A	G	2.172e^-4	0.875	INTRON Glut1
2L	9101011	2L_9101011_SNP [dm3] 2L_9101011_SNP [dm6]	G	C	2.176e^-4	0.875	INTERGENIC
2L	714846	2L_714846_SNP [dm3] 2L_714846_SNP [dm6]	T	C	2.178e^-4	0.875	UTR_5_PRIME ds INTRON CR44988	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19359730	2R_19359730_SNP [dm3] 2R_23472207_SNP [dm6]	A	T	2.185e^-4	0.875	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3L	23841621	3L_23841621_SNP [dm3] 3L_23848521_SNP [dm6]	A	C	2.189e^-4	0.875	INTRON CG40470
3R	16473291	3R_16473291_SNP [dm3] 3R_20647569_SNP [dm6]	A	G	2.195e^-4	0.875	SYNONYMOUS_CODING GluRIIE
3R	7138756	3R_7138756_SNP [dm3] 3R_11313034_SNP [dm6]	T	C	2.200e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19792048	X_19792048_SNP [dm3] X_19898015_SNP [dm6]	C	A	2.201e^-4	0.875	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
3R	8430466	3R_8430466_SNP [dm3] 3R_12604744_SNP [dm6]	A	T	2.208e^-4	0.875	INTERGENIC
3L	9808307	3L_9808307_SNP [dm3] 3L_9815207_SNP [dm6]	A	T	2.211e^-4	0.875	UPSTREAM CG43897 INTRON CG43897
X	12096409	X_12096409_SNP [dm3] X_12202376_SNP [dm6]	A	G	2.227e^-4	0.875	INTRON Ten-a	enhancer mE1_CBP_Enhancers
X	22051419	X_22051419_SNP [dm3] X_22649583_SNP [dm6]	T	C	2.228e^-4	0.875	INTERGENIC
X	22040853	X_22040853_INS [dm3] X_22639017_INS [dm6]	C	TTTATTATAGA...	2.231e^-4	0.875	INTERGENIC
2R	19966370	2R_19966370_SNP [dm3] 2R_24078847_SNP [dm6]	T	C	2.244e^-4	0.875	SYNONYMOUS_CODING CG10339 DOWNSTREAM Mlp60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8628220	X_8628220_SNP [dm3] X_8734187_SNP [dm6]	A	C	2.251e^-4	0.875	INTERGENIC
3L	18605108	3L_18605108_SNP [dm3] 3L_18612008_SNP [dm6]	A	G	2.260e^-4	0.875	NON_SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	11891481	3L_11891481_SNP [dm3] 3L_11898381_SNP [dm6]	C	T	2.262e^-4	0.875	UPSTREAM CR43624 INTRON CG44837
X	16928217	X_16928217_SNP [dm3] X_17034184_SNP [dm6]	G	C	2.265e^-4	0.875	INTRON CG45002
2L	1610928	2L_1610928_SNP [dm3] 2L_1610928_SNP [dm6]	G	C	2.268e^-4	0.875	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	2822329	X_2822329_SNP [dm3] X_2928296_SNP [dm6]	A	G	2.271e^-4	0.875	INTRON kirre
X	8681253	X_8681253_SNP [dm3] X_8787220_SNP [dm6]	C	T	2.276e^-4	0.875	INTRON Lim1
3R	17503541	3R_17503541_SNP [dm3] 3R_21677819_SNP [dm6]	C	T	2.281e^-4	0.875	INTRON CG31176
X	12098836	X_12098836_SNP [dm3] X_12204803_SNP [dm6]	A	G	2.287e^-4	0.875	INTRON Ten-a
2L	6108532	2L_6108532_SNP [dm3] 2L_6108532_SNP [dm6]	T	A	2.294e^-4	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8423218	X_8423218_SNP [dm3] X_8529185_SNP [dm6]	T	G	2.295e^-4	0.875	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	6565907	3L_6565907_SNP [dm3] 3L_6572807_SNP [dm6]	C	G	2.302e^-4	0.875	INTRON CG18769 & 1 other
3L	8025876	3L_8025876_SNP [dm3] 3L_8032776_SNP [dm6]	A	G	2.310e^-4	0.875	INTRON nmo
3R	25454130	3R_25454130_SNP [dm3] 3R_29628408_SNP [dm6]	C	T	2.310e^-4	0.875	INTERGENIC
3L	3878811	3L_3878811_SNP [dm3] 3L_3878811_SNP [dm6]	A	G	2.316e^-4	0.875	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	22065478	3R_22065478_SNP [dm3] 3R_26239756_SNP [dm6]	A	C	2.316e^-4	0.875	INTRON CR42745
2R	7061961	2R_7061961_SNP [dm3] 2R_11174456_SNP [dm6]	C	T	2.318e^-4	0.875	UTR_5_PRIME shn INTRON shn	TF binding site mE1_TFBS_Trl
3R	24226080	3R_24226080_SNP [dm3] 3R_28400358_SNP [dm6]	C	A	2.319e^-4	0.875	INTERGENIC
3R	16042210	3R_16042210_SNP [dm3] 3R_20216488_SNP [dm6]	A	C	2.319e^-4	0.875	SYNONYMOUS_CODING Nlg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14032807	3R_14032807_SNP [dm3] 3R_18207085_SNP [dm6]	G	A	2.320e^-4	0.875	INTRON CG7985
3L	966549	3L_966549_SNP [dm3] 3L_966549_SNP [dm6]	C	T	2.320e^-4	0.875	INTRON Glut1
2R	18794828	2R_18794828_SNP [dm3] 2R_22907305_SNP [dm6]	T	A	2.326e^-4	0.875	INTRON nahoda
2L	1305250	2L_1305250_SNP [dm3] 2L_1305250_SNP [dm6]	C	T	2.328e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17222496	2L_17222496_SNP [dm3] 2L_17222496_SNP [dm6]	A	G	2.332e^-4	0.875	INTRON beat-IIIc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	26240867	3R_26240867_SNP [dm3] 3R_30415145_SNP [dm6]	A	G	2.332e^-4	0.875	INTERGENIC
3L	2497650	3L_2497650_SNP [dm3] 3L_2497650_SNP [dm6]	T	C	2.340e^-4	0.875	NON_SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1108118	2L_1108118_SNP [dm3] 2L_1108118_SNP [dm6]	T	C	2.342e^-4	0.875	NON_SYNONYMOUS_CODING mtRNApol UPSTREAM CG14339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	17688830	2R_17688830_SNP [dm3] 2R_21801325_SNP [dm6]	A	G	2.349e^-4	0.875	UPSTREAM CG4386 INTERGENIC
3L	10832020	3L_10832020_SNP [dm3] 3L_10838920_SNP [dm6]	G	A	2.349e^-4	0.875	INTERGENIC
3L	20932780	3L_20932780_SNP [dm3] 3L_20939680_SNP [dm6]	C	T	2.354e^-4	0.875	INTRON fng
3R	19111140	3R_19111140_SNP [dm3] 3R_23285418_SNP [dm6]	T	C	2.356e^-4	0.875	SYNONYMOUS_CODING CG6763 DOWNSTREAM CG17083	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11815768	3R_11815768_SNP [dm3] 3R_15990046_SNP [dm6]	T	C	2.363e^-4	0.875	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8339177	3L_8339177_SNP [dm3] 3L_8346077_SNP [dm6]	G	A	2.372e^-4	0.875	UTR_5_PRIME CG7182 UPSTREAM GAPcenA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25497419	3R_25497419_SNP [dm3] 3R_29671697_SNP [dm6]	A	C	2.387e^-4	0.875	UTR_5_PRIME Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16655247	3R_16655247_SNP [dm3] 3R_20829525_SNP [dm6]	G	C	2.398e^-4	0.875	INTRON AdSS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16036255	3L_16036255_SNP [dm3] 3L_16043155_SNP [dm6]	C	A	2.402e^-4	0.875	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Stat92E
3R	26241310	3R_26241310_SNP [dm3] 3R_30415588_SNP [dm6]	G	T	2.403e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7705418	2L_7705418_SNP [dm3] 2L_7705418_SNP [dm6]	G	A	2.405e^-4	0.875	NON_SYNONYMOUS_CODING Tep3
2L	9101968	2L_9101968_SNP [dm3] 2L_9101968_SNP [dm6]	T	A	2.406e^-4	0.875	INTERGENIC
2L	13087843	2L_13087843_SNP [dm3] 2L_13087843_SNP [dm6]	A	G	2.410e^-4	0.875	INTERGENIC
3L	10671778	3L_10671778_SNP [dm3] 3L_10678678_SNP [dm6]	G	T	2.417e^-4	0.875	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	5800709	3L_5800709_SNP [dm3] 3L_5807609_SNP [dm6]	T	A	2.418e^-4	0.875	INTRON S6k	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21650265	3R_21650265_SNP [dm3] 3R_25824543_SNP [dm6]	G	A	2.418e^-4	0.875	EXON CR44949
2L	1943536	2L_1943536_SNP [dm3] 2L_1943536_SNP [dm6]	C	G	2.421e^-4	0.875	UTR_3_PRIME CG7337 DOWNSTREAM CG7337
2R	19966994	2R_19966994_SNP [dm3] 2R_24079471_SNP [dm6]	A	G	2.424e^-4	0.875	SYNONYMOUS_CODING CG10339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1611365	2L_1611365_SNP [dm3] 2L_1611365_SNP [dm6]	A	T	2.445e^-4	0.875	UPSTREAM CG14352 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	9665903	2L_9665903_SNP [dm3] 2L_9665903_SNP [dm6]	T	A	2.448e^-4	0.875	INTERGENIC
2R	17974246	2R_17974246_SNP [dm3] 2R_22086741_SNP [dm6]	G	A	2.448e^-4	0.875	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj INTRON CG13502
3R	26788145	3R_26788145_SNP [dm3] 3R_30962423_SNP [dm6]	T	C	2.451e^-4	0.875	DOWNSTREAM Ctr1C & 1 other INTERGENIC
X	4301946	X_4301946_SNP [dm3] X_4407913_SNP [dm6]	C	T	2.456e^-4	0.875	INTRON CR32773
3L	5781303	3L_5781303_SNP [dm3] 3L_5788203_SNP [dm6]	A	T	2.460e^-4	0.875	INTERGENIC
X	12633492	X_12633492_INS [dm3] X_12739459_INS [dm6]	A	AA	2.461e^-4	0.875	INTRON Smr	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	2292659	2L_2292659_SNP [dm3] 2L_2292659_SNP [dm6]	T	C	2.466e^-4	0.875	INTERGENIC
3R	21640174	3R_21640174_INS [dm3] 3R_25814452_INS [dm6]	A	AGTATTTTA	2.466e^-4	0.875	INTERGENIC
3R	21650153	3R_21650153_SNP [dm3] 3R_25824431_SNP [dm6]	C	T	2.472e^-4	0.875	EXON CR44949
3R	19230759	3R_19230759_SNP [dm3] 3R_23405037_SNP [dm6]	G	T	2.475e^-4	0.875	SYNONYMOUS_CODING Ir94d UPSTREAM Ir94e
3R	25832230	3R_25832230_SNP [dm3] 3R_30006508_SNP [dm6]	A	G	2.484e^-4	0.875	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site mE1_TFBS_sens
3L	7532389	3L_7532389_SNP [dm3] 3L_7539289_SNP [dm6]	G	T	2.488e^-4	0.875	NON_SYNONYMOUS_CODING CG16998 UTR_3_PRIME lqf DOWNSTREAM CG32374
3R	23805331	3R_23805331_SNP [dm3] 3R_27979609_SNP [dm6]	A	T	2.489e^-4	0.875	INTRON betaTub97EF
2L	9374238	2L_9374238_DEL [dm3] 2L_9374238_DEL [dm6]	TTAAAC	T	2.495e^-4	0.875	DOWNSTREAM CR43865 INTRON Shawl
3L	8019231	3L_8019231_SNP [dm3] 3L_8026131_SNP [dm6]	T	A	2.497e^-4	0.875	INTRON nmo
3L	21611307	3L_21611307_SNP [dm3] 3L_21618207_SNP [dm6]	T	C	2.498e^-4	0.875	UPSTREAM S1P INTRON CG11307
2L	9776313	2L_9776313_SNP [dm3] 2L_9776313_SNP [dm6]	A	T	2.499e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9646254	2L_9646254_SNP [dm3] 2L_9646254_SNP [dm6]	C	G	2.499e^-4	0.875	INTRON Apoltp
3L	10813789	3L_10813789_SNP [dm3] 3L_10820689_SNP [dm6]	G	C	2.501e^-4	0.875	INTERGENIC
3L	8714435	3L_8714435_SNP [dm3] 3L_8721335_SNP [dm6]	G	A	2.518e^-4	0.875	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14315641	3R_14315641_SNP [dm3] 3R_18489919_SNP [dm6]	T	G	2.525e^-4	0.875	INTRON fru	TF binding site mE1_TFBS_cad
3R	19907812	3R_19907812_SNP [dm3] 3R_24082090_SNP [dm6]	T	C	2.527e^-4	0.875	INTRON 4EHP
3L	833810	3L_833810_SNP [dm3] 3L_833810_SNP [dm6]	A	C	2.537e^-4	0.875	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17688512	3L_17688512_SNP [dm3] 3L_17695412_SNP [dm6]	C	G	2.540e^-4	0.875	INTRON Ccn
3L	18884169	3L_18884169_SNP [dm3] 3L_18891069_SNP [dm6]	C	T	2.542e^-4	0.875	UPSTREAM CG3961 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12096398	X_12096398_SNP [dm3] X_12202365_SNP [dm6]	T	G	2.545e^-4	0.875	INTRON Ten-a	enhancer mE1_CBP_Enhancers
3L	16266201	3L_16266201_SNP [dm3] 3L_16273101_SNP [dm6]	A	G	2.552e^-4	0.875	INTRON CG13066
X	18741014	X_18741014_SNP [dm3] X_18846981_SNP [dm6]	C	T	2.556e^-4	0.875	SYNONYMOUS_CODING CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19678452	2R_19678452_SNP [dm3] 2R_23790929_SNP [dm6]	A	G	2.556e^-4	0.875	SYNONYMOUS_CODING CG15800 INTRON CG9850
3R	14677899	3R_14677899_INS [dm3] 3R_18852177_INS [dm6]	T	TTTAAT	2.570e^-4	0.875	UPSTREAM CR45633 & 1 other INTERGENIC
X	22053519	X_22053519_SNP [dm3] X_22651683_SNP [dm6]	C	T	2.574e^-4	0.875	INTERGENIC
X	12096394	X_12096394_SNP [dm3] X_12202361_SNP [dm6]	C	A	2.574e^-4	0.875	INTRON Ten-a	enhancer mE1_CBP_Enhancers
3R	14677902	3R_14677902_SNP [dm3] 3R_18852180_SNP [dm6]	G	A	2.574e^-4	0.875	UPSTREAM CR45633 & 1 other INTERGENIC
3L	8638343	3L_8638343_SNP [dm3] 3L_8645243_SNP [dm6]	G	A	2.577e^-4	0.875	NON_SYNONYMOUS_CODING CG13305 SYNONYMOUS_CODING CG13305
3R	18691194	3R_18691194_SNP [dm3] 3R_22865472_SNP [dm6]	A	T	2.578e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7749598	3R_7749598_SNP [dm3] 3R_11923876_SNP [dm6]	G	A	2.582e^-4	0.875	INTRON Cad87A
3R	18744753	3R_18744753_SNP [dm3] 3R_22919031_SNP [dm6]	C	T	2.584e^-4	0.875	INTRON klg
3R	17497986	3R_17497986_DEL [dm3] 3R_21672264_DEL [dm6]	TA	T	2.602e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5738809	3L_5738809_SNP [dm3] 3L_5745709_SNP [dm6]	T	A	2.607e^-4	0.875	UTR_3_PRIME sif INTRON sif
3R	13794349	3R_13794349_SNP [dm3] 3R_17968627_SNP [dm6]	A	G	2.611e^-4	0.875	INTRON cpo
2L	4714784	2L_4714784_SNP [dm3] 2L_4714784_SNP [dm6]	A	T	2.620e^-4	0.875	INTRON CG34351
2L	1238728	2L_1238728_SNP [dm3] 2L_1238728_SNP [dm6]	G	C	2.623e^-4	0.875	INTERGENIC
2L	14298686	2L_14298686_SNP [dm3] 2L_14298686_SNP [dm6]	G	A	2.626e^-4	0.875	INTRON wb
3L	7324863	3L_7324863_SNP [dm3] 3L_7331763_SNP [dm6]	G	A	2.637e^-4	0.875	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
2L	7759546	2L_7759546_SNP [dm3] 2L_7759546_SNP [dm6]	T	C	2.641e^-4	0.875	INTRON CG7196
2R	16543052	2R_16543052_INS [dm3] 2R_20655547_INS [dm6]	T	TTT	2.643e^-4	0.875	UPSTREAM CG16799 DOWNSTREAM CG11159 INTRON Lrt
3L	17285761	3L_17285761_SNP [dm3] 3L_17292661_SNP [dm6]	T	A	2.647e^-4	0.875	INTERGENIC
X	4301945	X_4301945_SNP [dm3] X_4407912_SNP [dm6]	A	C	2.653e^-4	0.875	INTRON CR32773
3R	17935365	3R_17935365_SNP [dm3] 3R_22109643_SNP [dm6]	A	T	2.659e^-4	0.875	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7326686	X_7326686_SNP [dm3] X_7432653_SNP [dm6]	G	C	2.665e^-4	0.875	INTERGENIC
3L	16245972	3L_16245972_SNP [dm3] 3L_16252872_SNP [dm6]	C	G	2.670e^-4	0.875	UPSTREAM CG13055 INTERGENIC
3R	18261373	3R_18261373_SNP [dm3] 3R_22435651_SNP [dm6]	T	A	2.675e^-4	0.875	INTRON CG13847
3L	7533441	3L_7533441_SNP [dm3] 3L_7540341_SNP [dm6]	G	C	2.675e^-4	0.875	SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf
X	10879109	X_10879109_SNP [dm3] X_10985076_SNP [dm6]	A	G	2.677e^-4	0.875	INTRON CG42339
3R	13604736	3R_13604736_SNP [dm3] 3R_17779014_SNP [dm6]	G	A	2.681e^-4	0.875	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3R	18868197	3R_18868197_SNP [dm3] 3R_23042475_SNP [dm6]	A	C	2.681e^-4	0.875	NON_SYNONYMOUS_CODING CG13838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9646376	2L_9646376_SNP [dm3] 2L_9646376_SNP [dm6]	T	C	2.694e^-4	0.875	SYNONYMOUS_CODING Apoltp
3R	17550461	3R_17550461_SNP [dm3] 3R_21724739_SNP [dm6]	C	A	2.699e^-4	0.875	INTERGENIC
2R	18925294	2R_18925294_SNP [dm3] 2R_23037771_SNP [dm6]	G	A	2.699e^-4	0.875	INTRON twi & 1 other
3R	2020230	3R_2020230_SNP [dm3] 3R_6194508_SNP [dm6]	T	C	2.701e^-4	0.875	UTR_3_PRIME NPFR INTRON NPFR
3R	14315625	3R_14315625_MNP [dm3] 3R_18489903_MNP [dm6]	TAT	GTA	2.706e^-4	0.875	INTRON fru	TF binding site mE1_TFBS_cad
2R	17278357	2R_17278357_SNP [dm3] 2R_21390852_SNP [dm6]	C	T	2.708e^-4	0.875	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
X	18741059	X_18741059_SNP [dm3] X_18847026_SNP [dm6]	C	T	2.711e^-4	0.875	SYNONYMOUS_CODING CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6992134	3L_6992134_SNP [dm3] 3L_6999034_SNP [dm6]	G	A	2.714e^-4	0.875	INTRON Mp
2L	1191915	2L_1191915_SNP [dm3] 2L_1191915_SNP [dm6]	C	T	2.718e^-4	0.875	SPLICE_SITE_REGION CG5001 INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1100142	2L_1100142_SNP [dm3] 2L_1100142_SNP [dm6]	T	A	2.722e^-4	0.875	INTRON CG4629
2R	20125377	2R_20125377_SNP [dm3] 2R_24237854_SNP [dm6]	A	C	2.732e^-4	0.875	EXON CR44827
2R	15365497	2R_15365497_SNP [dm3] 2R_19477992_SNP [dm6]	C	T	2.736e^-4	0.875	INTRON par-1
3R	16324846	3R_16324846_SNP [dm3] 3R_20499124_SNP [dm6]	C	T	2.743e^-4	0.875	DOWNSTREAM Dic2 INTERGENIC
2L	8835760	2L_8835760_SNP [dm3] 2L_8835760_SNP [dm6]	T	G	2.745e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	171348	2L_171348_SNP [dm3] 2L_171348_SNP [dm6]	C	A	2.745e^-4	0.875	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7762175	2L_7762175_SNP [dm3] 2L_7762175_SNP [dm6]	A	T	2.747e^-4	0.875	INTRON CG7196
3R	25265194	3R_25265194_SNP [dm3] 3R_29439472_SNP [dm6]	C	A	2.761e^-4	0.875	INTRON Ptp99A
2L	42709	2L_42709_SNP [dm3] 2L_42709_SNP [dm6]	G	A	2.764e^-4	0.875	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17889584	3R_17889584_SNP [dm3] 3R_22063862_SNP [dm6]	C	T	2.769e^-4	0.875	INTRON how
3L	5409760	3L_5409760_SNP [dm3] 3L_5416660_SNP [dm6]	G	T	2.772e^-4	0.875	INTERGENIC
3L	8271135	3L_8271135_INS [dm3] 3L_8278035_INS [dm6]	C	CAGGATC	2.772e^-4	0.875	INTRON Dscam4	TF binding site mE1_TFBS_cad
X	22053498	X_22053498_SNP [dm3] X_22651662_SNP [dm6]	C	T	2.784e^-4	0.875	INTERGENIC
3R	19122890	3R_19122890_SNP [dm3] 3R_23297168_SNP [dm6]	C	T	2.787e^-4	0.875	INTRON pnt
3R	24820134	3R_24820134_SNP [dm3] 3R_28994412_SNP [dm6]	T	G	2.788e^-4	0.875	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	58825	2L_58825_SNP [dm3] 2L_58825_SNP [dm6]	G	A	2.793e^-4	0.875	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9106023	3L_9106023_SNP [dm3] 3L_9112923_SNP [dm6]	A	C	2.796e^-4	0.875	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24799489	3R_24799489_SNP [dm3] 3R_28973767_SNP [dm6]	G	A	2.796e^-4	0.875	INTERGENIC
3R	15820397	3R_15820397_SNP [dm3] 3R_19994675_SNP [dm6]	A	T	2.803e^-4	0.875	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1611204	2L_1611204_SNP [dm3] 2L_1611204_SNP [dm6]	T	C	2.807e^-4	0.875	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9208320	2L_9208320_SNP [dm3] 2L_9208320_SNP [dm6]	C	T	2.812e^-4	0.875	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1713327	3R_1713327_SNP [dm3] 3R_5887605_SNP [dm6]	G	A	2.815e^-4	0.875	INTRON CG34113
X	7326680	X_7326680_SNP [dm3] X_7432647_SNP [dm6]	G	A	2.822e^-4	0.875	INTERGENIC
X	22054059	X_22054059_SNP [dm3] X_22652223_SNP [dm6]	G	C	2.825e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17278049	2R_17278049_SNP [dm3] 2R_21390544_SNP [dm6]	C	T	2.834e^-4	0.875	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2L	60532	2L_60532_DEL [dm3] 2L_60532_DEL [dm6]	TTTT	A	2.839e^-4	0.875	INTRON Cda5	transposable element FlyBase
3R	8248858	3R_8248858_SNP [dm3] 3R_12423136_SNP [dm6]	G	A	2.844e^-4	0.875	SYNONYMOUS_CODING CG17202 UPSTREAM Scgbeta DOWNSTREAM Pp1-87B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21561096	3L_21561096_SNP [dm3] 3L_21567996_SNP [dm6]	A	T	2.844e^-4	0.875	DOWNSTREAM CG7172 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	25528328	3R_25528328_DEL [dm3] 3R_29702606_DEL [dm6]	TCT	T	2.844e^-4	0.875	INTERGENIC
3L	19233130	3L_19233130_INS [dm3] 3L_19240030_INS [dm6]	C	CCAGTC	2.846e^-4	0.875	SPLICE_SITE_REGION CR43892 EXON CR43892
3R	16748577	3R_16748577_DEL [dm3] 3R_20922855_DEL [dm6]	AGTCAATTT	A	2.849e^-4	0.875	INTRON CG31191 & 1 other
3L	13171412	3L_13171412_SNP [dm3] 3L_13178312_SNP [dm6]	A	G	2.853e^-4	0.875	INTERGENIC
3R	19919756	3R_19919756_SNP [dm3] 3R_24094034_SNP [dm6]	G	A	2.854e^-4	0.875	INTRON 4EHP
3R	19341223	3R_19341223_SNP [dm3] 3R_23515501_SNP [dm6]	A	T	2.855e^-4	0.875	INTRON Irk2
2L	1473802	2L_1473802_SNP [dm3] 2L_1473802_SNP [dm6]	C	T	2.856e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17530126	3R_17530126_SNP [dm3] 3R_21704404_SNP [dm6]	T	G	2.861e^-4	0.875	INTRON CG31176
3L	9106121	3L_9106121_SNP [dm3] 3L_9113021_SNP [dm6]	T	C	2.862e^-4	0.875	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1237478	2L_1237478_SNP [dm3] 2L_1237478_SNP [dm6]	C	T	2.869e^-4	0.875	INTERGENIC
X	8669467	X_8669467_SNP [dm3] X_8775434_SNP [dm6]	T	A	2.879e^-4	0.875	INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	7865722	2R_7865722_SNP [dm3] 2R_11978217_SNP [dm6]	G	A	2.886e^-4	0.875	SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290 & 1 other	TF binding site mE1_TFBS_sens
3L	956609	3L_956609_SNP [dm3] 3L_956609_SNP [dm6]	C	T	2.886e^-4	0.875	INTRON Glut1
X	12630946	X_12630946_SNP [dm3] X_12736913_SNP [dm6]	A	T	2.887e^-4	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25972189	3R_25972189_SNP [dm3] 3R_30146467_SNP [dm6]	G	C	2.891e^-4	0.875	INTRON AdoR
3L	10150660	3L_10150660_SNP [dm3] 3L_10157560_SNP [dm6]	G	A	2.894e^-4	0.875	INTRON dpr10
2R	7029903	2R_7029903_SNP [dm3] 2R_11142398_SNP [dm6]	G	A	2.897e^-4	0.875	INTRON CG13229
3R	17550438	3R_17550438_SNP [dm3] 3R_21724716_SNP [dm6]	T	C	2.901e^-4	0.875	INTERGENIC
X	4343771	X_4343771_SNP [dm3] X_4449738_SNP [dm6]	A	G	2.919e^-4	0.875	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9212228	2L_9212228_SNP [dm3] 2L_9212228_SNP [dm6]	A	C	2.921e^-4	0.875	INTRON tai
2L	11016895	2L_11016895_SNP [dm3] 2L_11016895_SNP [dm6]	C	T	2.922e^-4	0.875	UPSTREAM CG14913 DOWNSTREAM Acp32CD INTRON Samuel
3R	18261352	3R_18261352_SNP [dm3] 3R_22435630_SNP [dm6]	C	T	2.923e^-4	0.875	INTRON CG13847
3L	21601381	3L_21601381_SNP [dm3] 3L_21608281_SNP [dm6]	G	A	2.925e^-4	0.875	UTR_5_PRIME TfAP-2 INTRON TfAP-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18144106	X_18144106_SNP [dm3] X_18250073_SNP [dm6]	A	G	2.926e^-4	0.875	INTERGENIC
3R	15637794	3R_15637794_SNP [dm3] 3R_19812072_SNP [dm6]	C	A	2.928e^-4	0.875	INTRON bnl	TF binding site mE1_TFBS_sens
X	16927813	X_16927813_SNP [dm3] X_17033780_SNP [dm6]	T	A	2.930e^-4	0.875	INTRON CG45002
X	5744683	X_5744683_SNP [dm3] X_5850650_SNP [dm6]	A	G	2.935e^-4	0.875	INTERGENIC
3L	959799	3L_959799_SNP [dm3] 3L_959799_SNP [dm6]	T	C	2.936e^-4	0.875	UTR_5_PRIME Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2L	81696	2L_81696_SNP [dm3] 2L_81696_SNP [dm6]	C	T	2.937e^-4	0.875	DOWNSTREAM net INTERGENIC
3R	26243202	3R_26243202_SNP [dm3] 3R_30417480_SNP [dm6]	G	T	2.946e^-4	0.875	INTERGENIC
3R	25946177	3R_25946177_SNP [dm3] 3R_30120455_SNP [dm6]	A	T	2.947e^-4	0.875	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22988159	3R_22988159_SNP [dm3] 3R_27162437_SNP [dm6]	G	A	2.947e^-4	0.875	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2R	17005619	2R_17005619_SNP [dm3] 2R_21118114_SNP [dm6]	A	C	2.952e^-4	0.875	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2L	7754680	2L_7754680_SNP [dm3] 2L_7754680_SNP [dm6]	G	A	2.960e^-4	0.875	INTRON CG7196
3L	18907815	3L_18907815_SNP [dm3] 3L_18914715_SNP [dm6]	C	T	2.960e^-4	0.875	UPSTREAM CG14077 INTERGENIC
2L	4372672	2L_4372672_SNP [dm3] 2L_4372672_SNP [dm6]	C	T	2.967e^-4	0.875	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	8339192	3L_8339192_SNP [dm3] 3L_8346092_SNP [dm6]	T	G	2.980e^-4	0.875	UTR_5_PRIME CG7182 UPSTREAM GAPcenA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1694094	2L_1694094_SNP [dm3] 2L_1694094_SNP [dm6]	A	G	2.995e^-4	0.875	INTRON chinmo
X	12015495	X_12015495_SNP [dm3] X_12121462_SNP [dm6]	A	G	2.997e^-4	0.875	INTRON Ten-a
3R	21449845	3R_21449845_SNP [dm3] 3R_25624123_SNP [dm6]	G	A	3.000e^-4	0.875	UPSTREAM Npl4 DOWNSTREAM Ssadh INTRON Npl4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	5781406	3L_5781406_SNP [dm3] 3L_5788306_SNP [dm6]	C	A	3.006e^-4	0.875	INTERGENIC
3R	25065300	3R_25065300_SNP [dm3] 3R_29239578_SNP [dm6]	A	G	3.018e^-4	0.875	SYNONYMOUS_CODING CG31427 UPSTREAM CG11951
2R	10010382	2R_10010382_INS [dm3] 2R_14122877_INS [dm6]	A	AA	3.020e^-4	0.875	INTRON Prosap	TF binding site mE1_TFBS_inv
3R	14889783	3R_14889783_SNP [dm3] 3R_19064061_SNP [dm6]	A	C	3.023e^-4	0.875	INTRON cdi
2L	7705541	2L_7705541_SNP [dm3] 2L_7705541_SNP [dm6]	G	C	3.024e^-4	0.875	NON_SYNONYMOUS_CODING Tep3
X	1688181	X_1688181_SNP [dm3] X_1794148_SNP [dm6]	G	T	3.032e^-4	0.875	INTRON CG42666	TF binding site BDTNP1_TFBS_dl
X	12096403	X_12096403_SNP [dm3] X_12202370_SNP [dm6]	A	G	3.059e^-4	0.875	INTRON Ten-a	enhancer mE1_CBP_Enhancers
3L	14449247	3L_14449247_SNP [dm3] 3L_14456147_SNP [dm6]	A	C	3.061e^-4	0.875	INTRON bbg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	12096384	X_12096384_DEL [dm3] X_12202351_DEL [dm6]	ATTT	GAA	3.066e^-4	0.875	INTRON Ten-a	enhancer mE1_CBP_Enhancers
2L	1155642	2L_1155642_SNP [dm3] 2L_1155642_SNP [dm6]	T	G	3.072e^-4	0.875	INTRON capt	TF binding site BDTNP1_TFBS_dl
X	8761488	X_8761488_SNP [dm3] X_8867455_SNP [dm6]	T	A	3.075e^-4	0.875	INTRON CG12075
X	11344554	X_11344554_SNP [dm3] X_11450521_SNP [dm6]	G	A	3.077e^-4	0.875	INTRON Evi5	TF binding site mE1_TFBS_HSA
3R	18677736	3R_18677736_SNP [dm3] 3R_22852014_SNP [dm6]	G	A	3.079e^-4	0.875	UPSTREAM CR43846 INTERGENIC
X	5542672	X_5542672_SNP [dm3] X_5648639_SNP [dm6]	A	T	3.085e^-4	0.875	UPSTREAM CG42492 INTERGENIC
2L	3801234	2L_3801234_SNP [dm3] 2L_3801234_SNP [dm6]	C	A	3.086e^-4	0.875	SYNONYMOUS_CODING CG3921
3R	7608806	3R_7608806_SNP [dm3] 3R_11783084_SNP [dm6]	C	T	3.089e^-4	0.875	NON_SYNONYMOUS_CODING CG17360
2R	14138933	2R_14138933_SNP [dm3] 2R_18251428_SNP [dm6]	T	A	3.091e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26106285	3R_26106285_SNP [dm3] 3R_30280563_SNP [dm6]	T	C	3.096e^-4	0.875	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	9929657	2L_9929657_SNP [dm3] 2L_9929657_SNP [dm6]	C	A	3.098e^-4	0.875	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21154849	X_21154849_SNP [dm3] X_21283822_SNP [dm6]	G	A	3.100e^-4	0.875	INTERGENIC
3R	13042415	3R_13042415_SNP [dm3] 3R_17216693_SNP [dm6]	A	G	3.109e^-4	0.875	DOWNSTREAM CG31262 INTERGENIC
X	18251496	X_18251496_SNP [dm3] X_18357463_SNP [dm6]	G	A	3.113e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13299080	3R_13299080_SNP [dm3] 3R_17473358_SNP [dm6]	T	C	3.120e^-4	0.875	DOWNSTREAM Dscam3 INTERGENIC
3L	17713748	3L_17713748_INS [dm3] 3L_17720648_INS [dm6]	A	ACCCACA	3.121e^-4	0.875	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_kn
X	22051781	X_22051781_SNP [dm3] X_22649945_SNP [dm6]	A	G	3.127e^-4	0.875	INTERGENIC
2L	8791327	2L_8791327_SNP [dm3] 2L_8791327_SNP [dm6]	G	T	3.128e^-4	0.875	INTERGENIC
3L	3580871	3L_3580871_SNP [dm3] 3L_3580871_SNP [dm6]	C	T	3.128e^-4	0.875	INTRON Eip63E
X	12096405	X_12096405_SNP [dm3] X_12202372_SNP [dm6]	T	A	3.133e^-4	0.875	INTRON Ten-a	enhancer mE1_CBP_Enhancers
3L	3038023	3L_3038023_SNP [dm3] 3L_3038023_SNP [dm6]	T	A	3.133e^-4	0.875	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	22126622	3L_22126622_SNP [dm3] 3L_22133522_SNP [dm6]	C	T	3.138e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7795528	3R_7795528_SNP [dm3] 3R_11969806_SNP [dm6]	A	T	3.142e^-4	0.875	INTRON GC1
3L	18935594	3L_18935594_INS [dm3] 3L_18942494_INS [dm6]	G	GCCACGCAAG	3.142e^-4	0.875	INTRON CG32204
2L	7705370	2L_7705370_SNP [dm3] 2L_7705370_SNP [dm6]	T	G	3.143e^-4	0.875	INTRON Tep3
2L	9359605	2L_9359605_SNP [dm3] 2L_9359605_SNP [dm6]	A	C	3.146e^-4	0.875	INTERGENIC
X	21154276	X_21154276_SNP [dm3] X_21283249_SNP [dm6]	A	T	3.164e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13791255	3R_13791255_SNP [dm3] 3R_17965533_SNP [dm6]	C	T	3.168e^-4	0.875	INTRON cpo
3R	20349206	3R_20349206_SNP [dm3] 3R_24523484_SNP [dm6]	A	C	3.169e^-4	0.875	UTR_5_PRIME CG13622	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19359709	2R_19359709_SNP [dm3] 2R_23472186_SNP [dm6]	C	T	3.170e^-4	0.875	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3R	19122892	3R_19122892_SNP [dm3] 3R_23297170_SNP [dm6]	T	C	3.171e^-4	0.875	INTRON pnt
3L	11184757	3L_11184757_SNP [dm3] 3L_11191657_SNP [dm6]	T	G	3.177e^-4	0.875	INTRON GlcAT-P
2L	1108107	2L_1108107_DEL [dm3] 2L_1108107_DEL [dm6]	TGTT	T	3.183e^-4	0.875	CODON_DELETION mtRNApol UPSTREAM CG14339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	12459620	X_12459620_SNP [dm3] X_12565587_SNP [dm6]	C	A	3.187e^-4	0.875	UTR_5_PRIME CG43921	TF binding site mE1_TFBS_kn
3R	5847231	3R_5847231_SNP [dm3] 3R_10021509_SNP [dm6]	T	G	3.191e^-4	0.875	UPSTREAM Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	23777517	3R_23777517_SNP [dm3] 3R_27951795_SNP [dm6]	G	A	3.200e^-4	0.875	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10652474	3R_10652474_SNP [dm3] 3R_14826752_SNP [dm6]	A	G	3.203e^-4	0.875	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25225137	3R_25225137_SNP [dm3] 3R_29399415_SNP [dm6]	A	T	3.213e^-4	0.875	INTRON Ptp99A
2R	19322750	2R_19322750_SNP [dm3] 2R_23435227_SNP [dm6]	G	A	3.222e^-4	0.875	INTERGENIC
2R	16618226	2R_16618226_SNP [dm3] 2R_20730721_SNP [dm6]	G	T	3.233e^-4	0.875	UPSTREAM CG13442 INTRON dpr
3L	833784	3L_833784_SNP [dm3] 3L_833784_SNP [dm6]	A	T	3.235e^-4	0.875	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10534449	3L_10534449_SNP [dm3] 3L_10541349_SNP [dm6]	T	A	3.241e^-4	0.875	INTRON A2bp1
X	11015769	X_11015769_SNP [dm3] X_11121736_SNP [dm6]	G	A	3.252e^-4	0.875	SYNONYMOUS_CODING CG11122	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23841527	3L_23841527_SNP [dm3] 3L_23848427_SNP [dm6]	G	T	3.253e^-4	0.875	INTRON CG40470
3R	26392848	3R_26392848_SNP [dm3] 3R_30567126_SNP [dm6]	G	A	3.263e^-4	0.875	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8724276	3L_8724276_SNP [dm3] 3L_8731176_SNP [dm6]	T	C	3.264e^-4	0.875	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3L	12960523	3L_12960523_SNP [dm3] 3L_12967423_SNP [dm6]	A	T	3.280e^-4	0.875	NON_SYNONYMOUS_CODING Or69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5108809	2R_5108809_SNP [dm3] 2R_9221304_SNP [dm6]	A	G	3.284e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4855638	2L_4855638_SNP [dm3] 2L_4855638_SNP [dm6]	A	T	3.286e^-4	0.875	INTRON pog
X	11229303	X_11229303_SNP [dm3] X_11335270_SNP [dm6]	G	A	3.289e^-4	0.875	INTRON Kap3	TF binding site mE1_TFBS_cad
X	22044672	X_22044672_SNP [dm3] X_22642836_SNP [dm6]	C	A	3.292e^-4	0.875	INTERGENIC
3L	4694662	3L_4694662_SNP [dm3] 3L_4694662_SNP [dm6]	C	T	3.293e^-4	0.875	SYNONYMOUS_CODING CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5410643	3L_5410643_SNP [dm3] 3L_5417543_SNP [dm6]	C	T	3.294e^-4	0.875	INTERGENIC
3L	6664667	3L_6664667_SNP [dm3] 3L_6671567_SNP [dm6]	T	C	3.294e^-4	0.875	INTERGENIC
2L	9549498	2L_9549498_SNP [dm3] 2L_9549498_SNP [dm6]	G	A	3.299e^-4	0.875	UTR_3_PRIME jp
3R	13604760	3R_13604760_SNP [dm3] 3R_17779038_SNP [dm6]	T	C	3.307e^-4	0.875	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3L	17683591	3L_17683591_SNP [dm3] 3L_17690491_SNP [dm6]	T	G	3.309e^-4	0.875	INTRON Ccn
X	9884025	X_9884025_SNP [dm3] X_9989992_SNP [dm6]	T	A	3.312e^-4	0.875	INTRON CG32694	TF binding site mE1_TFBS_HSA
3L	17101906	3L_17101906_SNP [dm3] 3L_17108806_SNP [dm6]	A	T	3.314e^-4	0.875	INTRON Rbp6
3R	16888677	3R_16888677_SNP [dm3] 3R_21062955_SNP [dm6]	A	G	3.315e^-4	0.875	SYNONYMOUS_CODING Cortactin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10837646	3L_10837646_SNP [dm3] 3L_10844546_SNP [dm6]	T	A	3.316e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25637677	3R_25637677_SNP [dm3] 3R_29811955_SNP [dm6]	G	C	3.322e^-4	0.875	SYNONYMOUS_CODING ca
X	21154284	X_21154284_MNP [dm3] X_21283257_MNP [dm6]	CTG	TAT	3.325e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20148454	3L_20148454_SNP [dm3] 3L_20155354_SNP [dm6]	T	A	3.329e^-4	0.875	INTRON CG42674
3L	877232	3L_877232_SNP [dm3] 3L_877232_SNP [dm6]	C	A	3.337e^-4	0.875	DOWNSTREAM CG13907 INTRON CG32479
3R	4978763	3R_4978763_DEL [dm3] 3R_9153041_DEL [dm6]	GCATTCGATGGG...	G	3.342e^-4	0.875	INTRON pum
3L	1390676	3L_1390676_SNP [dm3] 3L_1390676_SNP [dm6]	C	A	3.343e^-4	0.875	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26956152	3R_26956152_SNP [dm3] 3R_31130430_SNP [dm6]	G	A	3.343e^-4	0.875	UTR_5_PRIME CG15556 UPSTREAM CG15556	TF binding site mE1_TFBS_cad
3R	17806913	3R_17806913_SNP [dm3] 3R_21981191_SNP [dm6]	T	C	3.344e^-4	0.875	INTRON Eip93F
3L	8724286	3L_8724286_INS [dm3] 3L_8731186_INS [dm6]	G	GG	3.346e^-4	0.875	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
X	5709178	X_5709178_SNP [dm3] X_5815145_SNP [dm6]	T	A	3.347e^-4	0.875	NON_SYNONYMOUS_CODING CG15766	TF binding site mE1_TFBS_chinmo
3L	19524747	3L_19524747_SNP [dm3] 3L_19531647_SNP [dm6]	G	A	3.347e^-4	0.875	INTERGENIC
2L	7695400	2L_7695400_SNP [dm3] 2L_7695400_SNP [dm6]	C	T	3.349e^-4	0.875	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
2L	9398846	2L_9398846_SNP [dm3] 2L_9398846_SNP [dm6]	T	G	3.363e^-4	0.875	UPSTREAM CG4438 INTRON Shawl
3R	811278	3R_811278_SNP [dm3] 3R_4985556_SNP [dm6]	T	C	3.366e^-4	0.875	DOWNSTREAM CG2022 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	14315732	3R_14315732_SNP [dm3] 3R_18490010_SNP [dm6]	A	G	3.367e^-4	0.875	INTRON fru	TF binding site mE1_TFBS_cad
3L	18839097	3L_18839097_SNP [dm3] 3L_18845997_SNP [dm6]	A	G	3.374e^-4	0.875	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24515840	3R_24515840_DEL [dm3] 3R_28690118_DEL [dm6]	TAATATATATAATAT...	T	3.375e^-4	0.875	INTRON CG9990	TF binding site mE1_TFBS_inv
3L	8339637	3L_8339637_SNP [dm3] 3L_8346537_SNP [dm6]	G	A	3.377e^-4	0.875	UPSTREAM GAPcenA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18874669	2R_18874669_SNP [dm3] 2R_22987146_SNP [dm6]	C	T	3.391e^-4	0.875	UPSTREAM CG9897 DOWNSTREAM CR42742 INTRON twi
3L	6802495	3L_6802495_SNP [dm3] 3L_6809395_SNP [dm6]	C	T	3.393e^-4	0.875	INTERGENIC
3L	10534445	3L_10534445_SNP [dm3] 3L_10541345_SNP [dm6]	A	T	3.399e^-4	0.875	INTRON A2bp1
3L	3553813	3L_3553813_SNP [dm3] 3L_3553813_SNP [dm6]	G	T	3.406e^-4	0.875	INTRON Eip63E
2L	6108522	2L_6108522_SNP [dm3] 2L_6108522_SNP [dm6]	C	A	3.409e^-4	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25758963	3R_25758963_SNP [dm3] 3R_29933241_SNP [dm6]	T	C	3.410e^-4	0.875	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9192577	2L_9192577_SNP [dm3] 2L_9192577_SNP [dm6]	C	T	3.417e^-4	0.875	INTRON tai
2R	13710421	2R_13710421_SNP [dm3] 2R_17822916_SNP [dm6]	C	T	3.423e^-4	0.875	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
3R	26036301	3R_26036301_SNP [dm3] 3R_30210579_SNP [dm6]	T	A	3.426e^-4	0.875	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	18893164	3R_18893164_SNP [dm3] 3R_23067442_SNP [dm6]	A	C	3.442e^-4	0.875	UPSTREAM CG17111 INTERGENIC
2L	6108686	2L_6108686_SNP [dm3] 2L_6108686_SNP [dm6]	G	C	3.444e^-4	0.875	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	2417073	2L_2417073_SNP [dm3] 2L_2417073_SNP [dm6]	A	T	3.456e^-4	0.875	SYNONYMOUS_CODING CG34448 UPSTREAM CG31948
3R	2831931	3R_2831931_SNP [dm3] 3R_7006209_SNP [dm6]	T	A	3.464e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt
X	5226542	X_5226542_SNP [dm3] X_5332509_SNP [dm6]	C	T	3.466e^-4	0.875	UTR_5_PRIME CanB UPSTREAM CanB DOWNSTREAM XRCC1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1433820	2L_1433820_SNP [dm3] 2L_1433820_SNP [dm6]	C	A	3.474e^-4	0.875	DOWNSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
2R	18024123	2R_18024123_SNP [dm3] 2R_22136618_SNP [dm6]	G	A	3.478e^-4	0.875	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19973662	3R_19973662_SNP [dm3] 3R_24147940_SNP [dm6]	A	C	3.485e^-4	0.875	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1	TF binding site mE1_TFBS_sens
2L	20866204	2L_20866204_DEL [dm3] 2L_20866204_DEL [dm6]	CC	C	3.492e^-4	0.875	INTRON CG9338	TF binding site mE1_TFBS_HSA
2R	16610348	2R_16610348_SNP [dm3] 2R_20722843_SNP [dm6]	G	A	3.493e^-4	0.875	INTRON dpr EXON CR44660
2L	46708	2L_46708_SNP [dm3] 2L_46708_SNP [dm6]	T	A	3.506e^-4	0.875	INTRON Cda5
X	22053487	X_22053487_SNP [dm3] X_22651651_SNP [dm6]	A	G	3.507e^-4	0.875	INTERGENIC
3L	7821355	3L_7821355_SNP [dm3] 3L_7828255_SNP [dm6]	G	A	3.525e^-4	0.875	UPSTREAM Pdp1 INTRON Pdp1
3R	18261344	3R_18261344_SNP [dm3] 3R_22435622_SNP [dm6]	T	A	3.525e^-4	0.875	INTRON CG13847
X	12632202	X_12632202_SNP [dm3] X_12738169_SNP [dm6]	C	G	3.528e^-4	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22977161	3R_22977161_SNP [dm3] 3R_27151439_SNP [dm6]	A	T	3.533e^-4	0.875	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1438438	2L_1438438_SNP [dm3] 2L_1438438_SNP [dm6]	T	A	3.533e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25935991	3R_25935991_SNP [dm3] 3R_30110269_SNP [dm6]	A	G	3.534e^-4	0.875	SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad
3L	7324995	3L_7324995_SNP [dm3] 3L_7331895_SNP [dm6]	G	C	3.536e^-4	0.875	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
3R	13642247	3R_13642247_SNP [dm3] 3R_17816525_SNP [dm6]	C	T	3.540e^-4	0.875	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17177839	3R_17177839_SNP [dm3] 3R_21352117_SNP [dm6]	T	G	3.541e^-4	0.875	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2L	7705719	2L_7705719_SNP [dm3] 2L_7705719_SNP [dm6]	C	T	3.541e^-4	0.875	SYNONYMOUS_CODING Tep3
2L	7765948	2L_7765948_SNP [dm3] 2L_7765948_SNP [dm6]	T	A	3.548e^-4	0.875	DOWNSTREAM CG7196 INTERGENIC
2L	1013846	2L_1013846_DEL [dm3] 2L_1013846_DEL [dm6]	AAA	G	3.555e^-4	0.875	UTR_3_PRIME IA-2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7129833	2L_7129833_SNP [dm3] 2L_7129833_SNP [dm6]	A	C	3.563e^-4	0.875	INTRON Pvf3
3L	21597898	3L_21597898_DEL [dm3] 3L_21604798_DEL [dm6]	AAATGT	A	3.564e^-4	0.875	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	17390284	X_17390284_INS [dm3] X_17496251_INS [dm6]	A	ACATA	3.577e^-4	0.875	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	8023934	3L_8023934_SNP [dm3] 3L_8030834_SNP [dm6]	T	G	3.589e^-4	0.875	INTRON nmo
3L	958939	3L_958939_SNP [dm3] 3L_958939_SNP [dm6]	C	T	3.602e^-4	0.875	UPSTREAM Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4365113	X_4365113_SNP [dm3] X_4471080_SNP [dm6]	C	T	3.606e^-4	0.875	INTRON bi & 1 other
2L	9401049	2L_9401049_SNP [dm3] 2L_9401049_SNP [dm6]	T	A	3.609e^-4	0.875	INTRON Shawl
2L	1611324	2L_1611324_SNP [dm3] 2L_1611324_SNP [dm6]	A	T	3.611e^-4	0.875	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	13315555	3L_13315555_SNP [dm3] 3L_13322455_SNP [dm6]	G	A	3.620e^-4	0.875	INTERGENIC
2L	45120	2L_45120_SNP [dm3] 2L_45120_SNP [dm6]	T	A	3.627e^-4	0.875	INTRON Cda5	TF binding site mE1_TFBS_HSA
2L	6108494	2L_6108494_DEL [dm3] 2L_6108494_DEL [dm6]	TTAT	T	3.642e^-4	0.875	INTRON stai
2L	1610997	2L_1610997_SNP [dm3] 2L_1610997_SNP [dm6]	G	A	3.659e^-4	0.875	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18835210	3L_18835210_SNP [dm3] 3L_18842110_SNP [dm6]	G	C	3.668e^-4	0.875	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13313340	3L_13313340_SNP [dm3] 3L_13320240_SNP [dm6]	G	A	3.668e^-4	0.875	INTERGENIC
3R	20828523	3R_20828523_SNP [dm3] 3R_25002801_SNP [dm6]	A	G	3.669e^-4	0.875	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21154281	X_21154281_SNP [dm3] X_21283254_SNP [dm6]	A	T	3.674e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15241399	3L_15241399_SNP [dm3] 3L_15248299_SNP [dm6]	A	G	3.675e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	18529333	3R_18529333_SNP [dm3] 3R_22703611_SNP [dm6]	G	T	3.681e^-4	0.875	DOWNSTREAM CG13842 INTRON CG6972	TF binding site mE1_TFBS_inv
3L	10482061	3L_10482061_SNP [dm3] 3L_10488961_SNP [dm6]	A	C	3.685e^-4	0.875	INTRON A2bp1
3L	6747792	3L_6747792_SNP [dm3] 3L_6754692_SNP [dm6]	A	G	3.688e^-4	0.875	DOWNSTREAM CG10103 & 1 other INTRON CG10103	TF binding site mE1_TFBS_cad
X	4343975	X_4343975_SNP [dm3] X_4449942_SNP [dm6]	T	A	3.689e^-4	0.875	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15891270	3R_15891270_SNP [dm3] 3R_20065548_SNP [dm6]	C	T	3.692e^-4	0.875	INTERGENIC
2R	6421723	2R_6421723_INS [dm3] 2R_10534218_INS [dm6]	T	TT	3.692e^-4	0.875	UTR_5_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14308135	3R_14308135_SNP [dm3] 3R_18482413_SNP [dm6]	T	C	3.694e^-4	0.875	INTRON fru
3L	8062119	3L_8062119_SNP [dm3] 3L_8069019_SNP [dm6]	C	G	3.697e^-4	0.875	SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
X	6682205	X_6682205_DEL [dm3] X_6788172_DEL [dm6]	TGTGTACT	T	3.699e^-4	0.875	INTRON C3G	TF binding site mE1_TFBS_chinmo
X	18251526	X_18251526_SNP [dm3] X_18357493_SNP [dm6]	T	A	3.704e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1472772	2L_1472772_SNP [dm3] 2L_1472772_SNP [dm6]	G	T	3.705e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9112703	2L_9112703_SNP [dm3] 2L_9112703_SNP [dm6]	T	A	3.706e^-4	0.875	SYNONYMOUS_CODING Or30a
3R	21873683	3R_21873683_SNP [dm3] 3R_26047961_SNP [dm6]	T	C	3.713e^-4	0.875	SYNONYMOUS_CODING gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10007742	2R_10007742_SNP [dm3] 2R_14120237_SNP [dm6]	T	A	3.716e^-4	0.875	INTRON Prosap
X	22053483	X_22053483_SNP [dm3] X_22651647_SNP [dm6]	A	T	3.720e^-4	0.875	INTERGENIC
3L	17713437	3L_17713437_SNP [dm3] 3L_17720337_SNP [dm6]	G	T	3.722e^-4	0.875	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10099449	2R_10099449_SNP [dm3] 2R_14211944_SNP [dm6]	A	G	3.723e^-4	0.875	UTR_5_PRIME Sox15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15628971	3R_15628971_SNP [dm3] 3R_19803249_SNP [dm6]	T	C	3.727e^-4	0.875	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10010428	2R_10010428_SNP [dm3] 2R_14122923_SNP [dm6]	A	T	3.730e^-4	0.875	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	3.737e^-4	0.875	INTERGENIC
3R	22000685	3R_22000685_SNP [dm3] 3R_26174963_SNP [dm6]	C	T	3.743e^-4	0.875	INTRON CG31323
3L	9809553	3L_9809553_SNP [dm3] 3L_9816453_SNP [dm6]	C	G	3.746e^-4	0.875	INTRON CG43897
2R	12829031	2R_12829031_SNP [dm3] 2R_16941526_SNP [dm6]	A	G	3.749e^-4	0.875	INTRON Pkc53E
X	632674	X_632674_SNP [dm3] X_738641_SNP [dm6]	A	C	3.756e^-4	0.875	INTRON sdk
3L	18834233	3L_18834233_SNP [dm3] 3L_18841133_SNP [dm6]	A	T	3.760e^-4	0.875	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17935173	3R_17935173_SNP [dm3] 3R_22109451_SNP [dm6]	C	T	3.761e^-4	0.875	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13103039	2L_13103039_SNP [dm3] 2L_13103039_SNP [dm6]	A	C	3.766e^-4	0.875	INTERGENIC
3R	17534366	3R_17534366_SNP [dm3] 3R_21708644_SNP [dm6]	G	T	3.766e^-4	0.875	INTRON CG31176
3L	21597147	3L_21597147_SNP [dm3] 3L_21604047_SNP [dm6]	A	T	3.766e^-4	0.875	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15260680	3L_15260680_SNP [dm3] 3L_15267580_SNP [dm6]	C	G	3.773e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18834446	3R_18834446_SNP [dm3] 3R_23008724_SNP [dm6]	A	T	3.774e^-4	0.875	INTRON CG34375
X	13957280	X_13957280_SNP [dm3] X_14063247_SNP [dm6]	C	G	3.784e^-4	0.875	INTERGENIC
X	17049340	X_17049340_SNP [dm3] X_17155307_SNP [dm6]	T	C	3.794e^-4	0.875	NON_SYNONYMOUS_CODING xmas-2 UPSTREAM xmas-1	TF binding site mE1_TFBS_sens
2R	14396568	2R_14396568_SNP [dm3] 2R_18509063_SNP [dm6]	A	G	3.798e^-4	0.875	INTERGENIC
X	18151671	X_18151671_DEL [dm3] X_18257638_DEL [dm6]	GG	G	3.801e^-4	0.875	DOWNSTREAM CG15059 EXON CR45613	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3554065	3L_3554065_SNP [dm3] 3L_3554065_SNP [dm6]	C	A	3.812e^-4	0.875	INTRON Eip63E
2R	16362002	2R_16362002_SNP [dm3] 2R_20474497_SNP [dm6]	G	T	3.823e^-4	0.875	INTRON CG12484
3R	16760479	3R_16760479_SNP [dm3] 3R_20934757_SNP [dm6]	C	A	3.824e^-4	0.875	INTRON CG31191
3L	11195461	3L_11195461_SNP [dm3] 3L_11202361_SNP [dm6]	G	A	3.832e^-4	0.875	DOWNSTREAM CG14141 INTRON Plod
2L	6108509	2L_6108509_INS [dm3] 2L_6108509_INS [dm6]	T	TCGTT	3.835e^-4	0.875	INTRON stai
2R	12801899	2R_12801899_SNP [dm3] 2R_16914394_SNP [dm6]	A	T	3.856e^-4	0.875	INTERGENIC
3R	17550625	3R_17550625_SNP [dm3] 3R_21724903_SNP [dm6]	G	A	3.861e^-4	0.875	INTERGENIC
2R	17276973	2R_17276973_SNP [dm3] 2R_21389468_SNP [dm6]	A	G	3.862e^-4	0.875	UTR_5_PRIME Acox57D-d DOWNSTREAM Acox57D-p
2L	9100214	2L_9100214_SNP [dm3] 2L_9100214_SNP [dm6]	A	T	3.881e^-4	0.875	DOWNSTREAM CR44482 INTERGENIC
2L	10633330	2L_10633330_SNP [dm3] 2L_10633330_SNP [dm6]	T	C	3.888e^-4	0.875	INTRON CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	960377	3L_960377_SNP [dm3] 3L_960377_SNP [dm6]	C	T	3.895e^-4	0.875	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9808438	3L_9808438_SNP [dm3] 3L_9815338_SNP [dm6]	C	T	3.904e^-4	0.875	UPSTREAM CG43897 INTRON CG43897
X	635084	X_635084_SNP [dm3] X_741051_SNP [dm6]	A	G	3.904e^-4	0.875	INTRON sdk
3R	8737828	3R_8737828_SNP [dm3] 3R_12912106_SNP [dm6]	T	G	3.907e^-4	0.875	UPSTREAM CG10909 INTERGENIC
X	17390076	X_17390076_SNP [dm3] X_17496043_SNP [dm6]	T	C	3.910e^-4	0.875	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_Kr
3L	7490556	3L_7490556_SNP [dm3] 3L_7497456_SNP [dm6]	A	T	3.911e^-4	0.875	NON_SYNONYMOUS_CODING CG8539
3R	26246774	3R_26246774_SNP [dm3] 3R_30421052_SNP [dm6]	A	T	3.914e^-4	0.875	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10910585	2L_10910585_SNP [dm3] 2L_10910585_SNP [dm6]	G	C	3.920e^-4	0.875	UTR_5_PRIME CG14069 UPSTREAM CG14069
X	20152579	X_20152579_SNP [dm3] X_20281552_SNP [dm6]	A	T	3.939e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2831754	3R_2831754_SNP [dm3] 3R_7006032_SNP [dm6]	A	T	3.956e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10908329	2L_10908329_SNP [dm3] 2L_10908329_SNP [dm6]	G	A	3.957e^-4	0.875	SYNONYMOUS_CODING CG7309
3R	14315679	3R_14315679_SNP [dm3] 3R_18489957_SNP [dm6]	C	T	3.957e^-4	0.875	INTRON fru	TF binding site mE1_TFBS_cad
2L	35760	2L_35760_SNP [dm3] 2L_35760_SNP [dm6]	A	C	3.961e^-4	0.875	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	10486930	3L_10486930_SNP [dm3] 3L_10493830_SNP [dm6]	G	T	3.965e^-4	0.875	DOWNSTREAM S-Lap4 INTRON A2bp1
3R	23434481	3R_23434481_SNP [dm3] 3R_27608759_SNP [dm6]	C	T	3.966e^-4	0.875	INTRON Tusp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13353717	3R_13353717_SNP [dm3] 3R_17527995_SNP [dm6]	A	C	3.967e^-4	0.875	INTERGENIC
2L	703275	2L_703275_SNP [dm3] 2L_703275_SNP [dm6]	A	T	3.969e^-4	0.875	INTRON ds	TF binding site BDTNP1_TFBS_dl
3L	4654756	3L_4654756_SNP [dm3] 3L_4654756_SNP [dm6]	A	G	3.978e^-4	0.875	INTRON axo
3R	26102405	3R_26102405_SNP [dm3] 3R_30276683_SNP [dm6]	C	A	3.985e^-4	0.875	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6494033	3L_6494033_SNP [dm3] 3L_6500933_SNP [dm6]	C	T	3.992e^-4	0.875	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	20662694	3R_20662694_SNP [dm3] 3R_24836972_SNP [dm6]	T	C	3.994e^-4	0.875	UTR_5_PRIME sosie DOWNSTREAM CR45216 INTRON sosie
2L	4435110	2L_4435110_SNP [dm3] 2L_4435110_SNP [dm6]	T	A	3.995e^-4	0.875	DOWNSTREAM CG34177 & 1 other INTRON CG15431
2R	9290469	2R_9290469_SNP [dm3] 2R_13402964_SNP [dm6]	G	A	4.002e^-4	0.875	INTERGENIC
3R	13699226	3R_13699226_SNP [dm3] 3R_17873504_SNP [dm6]	T	C	4.004e^-4	0.875	UTR_3_PRIME Rim DOWNSTREAM tinc
2L	10561634	2L_10561634_SNP [dm3] 2L_10561634_SNP [dm6]	T	C	4.010e^-4	0.875	INTRON Trim9
2R	16196524	2R_16196524_SNP [dm3] 2R_20309019_SNP [dm6]	C	A	4.018e^-4	0.875	UTR_3_PRIME CG13868 UPSTREAM CG11200 DOWNSTREAM CG13868	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7821867	3L_7821867_SNP [dm3] 3L_7828767_SNP [dm6]	G	T	4.024e^-4	0.875	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8838500	2L_8838500_SNP [dm3] 2L_8838500_SNP [dm6]	C	G	4.048e^-4	0.875	INTERGENIC
2R	16609836	2R_16609836_SNP [dm3] 2R_20722331_SNP [dm6]	G	C	4.048e^-4	0.875	UPSTREAM CR44660 INTRON dpr
3R	19767574	3R_19767574_SNP [dm3] 3R_23941852_SNP [dm6]	T	C	4.049e^-4	0.875	INTRON Gdh
3L	5950075	3L_5950075_DEL [dm3] 3L_5956975_DEL [dm6]	TT	T	4.050e^-4	0.875	INTERGENIC
3R	21348530	3R_21348530_SNP [dm3] 3R_25522808_SNP [dm6]	C	G	4.051e^-4	0.875	INTRON msi
2L	5390	2L_5390_SNP [dm3] 2L_5390_SNP [dm6]	T	A	4.058e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13686462	3R_13686462_SNP [dm3] 3R_17860740_SNP [dm6]	G	A	4.064e^-4	0.875	INTRON tinc
2R	8789839	2R_8789839_SNP [dm3] 2R_12902334_SNP [dm6]	T	C	4.065e^-4	0.875	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14425465	2R_14425465_SNP [dm3] 2R_18537960_SNP [dm6]	T	A	4.071e^-4	0.875	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10335978	3L_10335978_SNP [dm3] 3L_10342878_SNP [dm6]	C	T	4.072e^-4	0.875	INTERGENIC
2L	901875	2L_901875_INS [dm3] 2L_901875_INS [dm6]	C	CTGTGACACATTGATTGGAA...	4.076e^-4	0.875	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1391154	3L_1391154_SNP [dm3] 3L_1391154_SNP [dm6]	A	G	4.081e^-4	0.875	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8359367	2L_8359367_SNP [dm3] 2L_8359367_SNP [dm6]	G	A	4.102e^-4	0.875	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16196497	2R_16196497_DEL [dm3] 2R_20308992_DEL [dm6]	TTATGTTTTAAGTCTCCC...	T	4.103e^-4	0.875	UTR_3_PRIME CG13868 UPSTREAM CG11200 DOWNSTREAM CG13868	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26036312	3R_26036312_SNP [dm3] 3R_30210590_SNP [dm6]	T	A	4.113e^-4	0.875	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	18447480	2L_18447480_SNP [dm3] 2L_18447480_SNP [dm6]	A	C	4.118e^-4	0.875	NON_SYNONYMOUS_CODING ncm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26732358	3R_26732358_SNP [dm3] 3R_30906636_SNP [dm6]	T	C	4.123e^-4	0.875	INTERGENIC
3L	2682002	3L_2682002_SNP [dm3] 3L_2682002_SNP [dm6]	T	A	4.123e^-4	0.875	INTRON Fife
2L	60530	2L_60530_SNP [dm3] 2L_60530_SNP [dm6]	T	A	4.123e^-4	0.875	INTRON Cda5	transposable element FlyBase
2L	2004158	2L_2004158_SNP [dm3] 2L_2004158_SNP [dm6]	G	T	4.123e^-4	0.875	DOWNSTREAM CR43464 INTRON CG33543
2L	17795432	2L_17795432_SNP [dm3] 2L_17795432_SNP [dm6]	A	G	4.134e^-4	0.875	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1902799	2L_1902799_SNP [dm3] 2L_1902799_SNP [dm6]	T	C	4.140e^-4	0.875	INTRON CG7337
3L	2179454	3L_2179454_SNP [dm3] 3L_2179454_SNP [dm6]	C	G	4.149e^-4	0.875	INTERGENIC
2L	6108872	2L_6108872_SNP [dm3] 2L_6108872_SNP [dm6]	T	A	4.151e^-4	0.875	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	4788571	X_4788571_SNP [dm3] X_4894538_SNP [dm6]	C	A	4.160e^-4	0.875	INTRON CG42594
2R	14396562	2R_14396562_SNP [dm3] 2R_18509057_SNP [dm6]	A	T	4.165e^-4	0.875	INTERGENIC
3R	17634389	3R_17634389_SNP [dm3] 3R_21808667_SNP [dm6]	C	A	4.172e^-4	0.875	UTR_5_PRIME CASK UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21154714	X_21154714_SNP [dm3] X_21283687_SNP [dm6]	G	C	4.176e^-4	0.875	INTERGENIC	transposable element FlyBase
2L	18447931	2L_18447931_SNP [dm3] 2L_18447931_SNP [dm6]	A	G	4.178e^-4	0.875	SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	16875614	3R_16875614_SNP [dm3] 3R_21049892_SNP [dm6]	C	A	4.178e^-4	0.875	DOWNSTREAM CG17279 INTERGENIC
3R	25540749	3R_25540749_SNP [dm3] 3R_29715027_SNP [dm6]	A	G	4.179e^-4	0.875	DOWNSTREAM Dup99B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	6950497	3R_6950497_SNP [dm3] 3R_11124775_SNP [dm6]	G	C	4.184e^-4	0.875	INTERGENIC
X	5394025	X_5394025_SNP [dm3] X_5499992_SNP [dm6]	T	G	4.197e^-4	0.875	DOWNSTREAM CG32762 INTERGENIC
3R	26246536	3R_26246536_SNP [dm3] 3R_30420814_SNP [dm6]	A	C	4.198e^-4	0.875	START_GAINED CG42740 UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	19359736	2R_19359736_INS [dm3] 2R_23472213_INS [dm6]	A	AAAGTTGA	4.204e^-4	0.875	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2L	6108474	2L_6108474_SNP [dm3] 2L_6108474_SNP [dm6]	T	C	4.205e^-4	0.875	INTRON stai
2L	8340808	2L_8340808_SNP [dm3] 2L_8340808_SNP [dm6]	A	G	4.209e^-4	0.875	INTRON CG14274
3R	17935336	3R_17935336_SNP [dm3] 3R_22109614_SNP [dm6]	G	T	4.211e^-4	0.875	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17075774	X_17075774_SNP [dm3] X_17181741_SNP [dm6]	G	C	4.215e^-4	0.875	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3918643	3L_3918643_SNP [dm3] 3L_3918643_SNP [dm6]	A	G	4.219e^-4	0.875	INTRON Eip63F-1
3R	17066495	3R_17066495_SNP [dm3] 3R_21240773_SNP [dm6]	T	A	4.221e^-4	0.875	INTERGENIC	regulatory region REDfly_CRMs
2R	17282776	2R_17282776_SNP [dm3] 2R_21395271_SNP [dm6]	A	T	4.222e^-4	0.875	INTRON Sdc
3R	14841118	3R_14841118_SNP [dm3] 3R_19015396_SNP [dm6]	T	C	4.225e^-4	0.875	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10591161	2L_10591161_SNP [dm3] 2L_10591161_SNP [dm6]	T	A	4.235e^-4	0.875	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	7387140	3L_7387140_SNP [dm3] 3L_7394040_SNP [dm6]	C	A	4.236e^-4	0.875	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18741542	2L_18741542_SNP [dm3] 2L_18741542_SNP [dm6]	G	C	4.242e^-4	0.875	DOWNSTREAM CG15167 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11117485	3L_11117485_SNP [dm3] 3L_11124385_SNP [dm6]	C	T	4.243e^-4	0.875	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	17277460	2R_17277460_SNP [dm3] 2R_21389955_SNP [dm6]	A	G	4.243e^-4	0.875	DOWNSTREAM Acox57D-p INTRON Acox57D-d
3R	15549162	3R_15549162_SNP [dm3] 3R_19723440_SNP [dm6]	C	T	4.251e^-4	0.875	INTERGENIC
2L	6108518	2L_6108518_INS [dm3] 2L_6108518_INS [dm6]	A	ATTT	4.259e^-4	0.875	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	8278364	3L_8278364_SNP [dm3] 3L_8285264_SNP [dm6]	C	G	4.263e^-4	0.875	INTRON cert	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3215257	2L_3215257_SNP [dm3] 2L_3215257_SNP [dm6]	T	A	4.268e^-4	0.875	INTERGENIC
X	17049223	X_17049223_SNP [dm3] X_17155190_SNP [dm6]	T	C	4.274e^-4	0.875	NON_SYNONYMOUS_CODING xmas-2 UPSTREAM xmas-1	TF binding site mE1_TFBS_sens
X	8395475	X_8395475_SNP [dm3] X_8501442_SNP [dm6]	G	A	4.289e^-4	0.875	UPSTREAM CG33181 INTRON CG33181
2L	18768721	2L_18768721_SNP [dm3] 2L_18768721_SNP [dm6]	T	C	4.311e^-4	0.875	INTRON ham
2R	17277989	2R_17277989_SNP [dm3] 2R_21390484_SNP [dm6]	C	T	4.312e^-4	0.875	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3R	14315670	3R_14315670_DEL [dm3] 3R_18489948_DEL [dm6]	GAACT	G	4.314e^-4	0.875	INTRON fru	TF binding site mE1_TFBS_cad
2R	10139474	2R_10139474_SNP [dm3] 2R_14251969_SNP [dm6]	A	C	4.315e^-4	0.875	DOWNSTREAM Hsc70-5 INTRON Mdr50	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	960621	3L_960621_SNP [dm3] 3L_960621_SNP [dm6]	T	A	4.318e^-4	0.875	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	8864754	3R_8864754_SNP [dm3] 3R_13039032_SNP [dm6]	A	T	4.320e^-4	0.875	INTRON CG11668
3L	14317293	3L_14317293_DEL [dm3] 3L_14324193_DEL [dm6]	GGG	G	4.339e^-4	0.875	INTRON fz & 1 other
3L	5781289	3L_5781289_DEL [dm3] 3L_5788189_DEL [dm6]	CTA	C	4.343e^-4	0.875	INTERGENIC
2L	12124243	2L_12124243_SNP [dm3] 2L_12124243_SNP [dm6]	T	C	4.357e^-4	0.875	INTRON CG17211
2L	4400444	2L_4400444_SNP [dm3] 2L_4400444_SNP [dm6]	C	A	4.362e^-4	0.875	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003 DOWNSTREAM l_2_k05819
X	11229332	X_11229332_SNP [dm3] X_11335299_SNP [dm6]	A	G	4.367e^-4	0.875	INTRON Kap3	TF binding site mE1_TFBS_cad
3R	18331201	3R_18331201_SNP [dm3] 3R_22505479_SNP [dm6]	A	G	4.368e^-4	0.875	INTRON Octbeta1R
2L	18448480	2L_18448480_SNP [dm3] 2L_18448480_SNP [dm6]	A	T	4.371e^-4	0.875	SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17496924	3R_17496924_SNP [dm3] 3R_21671202_SNP [dm6]	C	T	4.373e^-4	0.875	SYNONYMOUS_CODING DNApol-alpha180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12490046	2L_12490046_SNP [dm3] 2L_12490046_SNP [dm6]	A	G	4.378e^-4	0.875	INTRON bun
3R	16760692	3R_16760692_SNP [dm3] 3R_20934970_SNP [dm6]	A	G	4.380e^-4	0.875	INTRON CG31191
3R	26780590	3R_26780590_SNP [dm3] 3R_30954868_SNP [dm6]	T	C	4.384e^-4	0.875	INTERGENIC
2L	9549493	2L_9549493_SNP [dm3] 2L_9549493_SNP [dm6]	G	C	4.386e^-4	0.875	UTR_3_PRIME jp
2R	10368962	2R_10368962_SNP [dm3] 2R_14481457_SNP [dm6]	T	A	4.392e^-4	0.875	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20387988	2R_20387988_SNP [dm3] 2R_24500465_SNP [dm6]	T	A	4.394e^-4	0.875	UPSTREAM Ssl DOWNSTREAM Prosalpha4T2 INTERGENIC
X	21154721	X_21154721_DEL [dm3] X_21283694_DEL [dm6]	ACTATAGCATTCTCTCTTGT...	A	4.394e^-4	0.875	INTERGENIC	transposable element FlyBase
3L	10824284	3L_10824284_SNP [dm3] 3L_10831184_SNP [dm6]	T	A	4.396e^-4	0.875	INTERGENIC
3L	10934402	3L_10934402_SNP [dm3] 3L_10941302_SNP [dm6]	G	A	4.396e^-4	0.875	INTERGENIC
3R	17497678	3R_17497678_SNP [dm3] 3R_21671956_SNP [dm6]	C	G	4.396e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	17726210	3R_17726210_SNP [dm3] 3R_21900488_SNP [dm6]	C	G	4.398e^-4	0.875	INTRON CG6678
2L	703437	2L_703437_SNP [dm3] 2L_703437_SNP [dm6]	G	A	4.401e^-4	0.875	INTRON ds
3L	20433510	3L_20433510_DEL [dm3] 3L_20440410_DEL [dm6]	CATTGTTA	C	4.404e^-4	0.875	UPSTREAM CG11796 DOWNSTREAM CR45176 EXON CR43943
X	19792105	X_19792105_SNP [dm3] X_19898072_SNP [dm6]	A	C	4.412e^-4	0.875	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
3L	17977057	3L_17977057_SNP [dm3] 3L_17983957_SNP [dm6]	T	C	4.418e^-4	0.875	INTRON Eip75B
3R	26628365	3R_26628365_SNP [dm3] 3R_30802643_SNP [dm6]	G	A	4.419e^-4	0.875	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1291273	2L_1291273_SNP [dm3] 2L_1291273_SNP [dm6]	C	G	4.425e^-4	0.875	INTRON robo3
3L	15736385	3L_15736385_DEL [dm3] 3L_15743285_DEL [dm6]	TT	T	4.441e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	603839	2L_603839_SNP [dm3] 2L_603839_SNP [dm6]	T	C	4.444e^-4	0.875	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
3R	22977195	3R_22977195_SNP [dm3] 3R_27151473_SNP [dm6]	T	A	4.445e^-4	0.875	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1610934	2L_1610934_SNP [dm3] 2L_1610934_SNP [dm6]	A	G	4.454e^-4	0.875	SYNONYMOUS_CODING CG31935 UPSTREAM CG14352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24674364	3R_24674364_SNP [dm3] 3R_28848642_SNP [dm6]	C	T	4.455e^-4	0.875	INTRON spg
2R	14170906	2R_14170906_SNP [dm3] 2R_18283401_SNP [dm6]	C	T	4.460e^-4	0.875	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22049896	X_22049896_SNP [dm3] X_22648060_SNP [dm6]	A	C	4.476e^-4	0.875	INTERGENIC
2L	7693342	2L_7693342_SNP [dm3] 2L_7693342_SNP [dm6]	C	T	4.478e^-4	0.875	UPSTREAM CG7025 DOWNSTREAM Tep2 INTRON CG43235
3L	7826535	3L_7826535_SNP [dm3] 3L_7833435_SNP [dm6]	T	G	4.480e^-4	0.875	UPSTREAM Pdp1 INTRON Pdp1
3L	13315601	3L_13315601_SNP [dm3] 3L_13322501_SNP [dm6]	A	T	4.486e^-4	0.875	INTERGENIC
2L	9229958	2L_9229958_SNP [dm3] 2L_9229958_SNP [dm6]	T	C	4.488e^-4	0.875	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26246511	3R_26246511_SNP [dm3] 3R_30420789_SNP [dm6]	C	T	4.489e^-4	0.875	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	17497651	3R_17497651_SNP [dm3] 3R_21671929_SNP [dm6]	G	T	4.492e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	17497711	3R_17497711_SNP [dm3] 3R_21671989_SNP [dm6]	T	A	4.492e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	14374339	3R_14374339_SNP [dm3] 3R_18548617_SNP [dm6]	T	C	4.493e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18251390	X_18251390_SNP [dm3] X_18357357_SNP [dm6]	G	T	4.495e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5781319	3L_5781319_SNP [dm3] 3L_5788219_SNP [dm6]	A	T	4.495e^-4	0.875	INTERGENIC
X	12166831	X_12166831_SNP [dm3] X_12272798_SNP [dm6]	C	T	4.503e^-4	0.875	INTRON Ten-a
X	9800856	X_9800856_SNP [dm3] X_9906823_SNP [dm6]	G	A	4.510e^-4	0.875	INTERGENIC
3L	18830203	3L_18830203_SNP [dm3] 3L_18837103_SNP [dm6]	A	T	4.514e^-4	0.875	INTRON Indy	TF binding site mE1_TFBS_zfh1
2L	7756056	2L_7756056_SNP [dm3] 2L_7756056_SNP [dm6]	G	T	4.524e^-4	0.875	UPSTREAM CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo
X	6497869	X_6497869_SNP [dm3] X_6603836_SNP [dm6]	G	C	4.525e^-4	0.875	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21650264	3R_21650264_SNP [dm3] 3R_25824542_SNP [dm6]	G	A	4.529e^-4	0.875	EXON CR44949
X	20401977	X_20401977_INS [dm3] X_20530950_INS [dm6]	T	TTAT	4.530e^-4	0.875	INTERGENIC
2L	3343905	2L_3343905_SNP [dm3] 2L_3343905_SNP [dm6]	G	A	4.533e^-4	0.875	INTRON E23
3L	10856702	3L_10856702_SNP [dm3] 3L_10863602_SNP [dm6]	C	T	4.538e^-4	0.875	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2L	3390555	2L_3390555_SNP [dm3] 2L_3390555_SNP [dm6]	T	C	4.538e^-4	0.875	DOWNSTREAM CR44791 INTERGENIC
X	8681561	X_8681561_SNP [dm3] X_8787528_SNP [dm6]	C	T	4.539e^-4	0.875	INTRON Lim1
2L	9651776	2L_9651776_SNP [dm3] 2L_9651776_SNP [dm6]	A	G	4.541e^-4	0.875	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_sens
3L	8973941	3L_8973941_DEL [dm3] 3L_8980841_DEL [dm6]	GCAATTT	G	4.544e^-4	0.875	UPSTREAM CG5644 & 1 other INTERGENIC
3R	21288434	3R_21288434_SNP [dm3] 3R_25462712_SNP [dm6]	T	C	4.547e^-4	0.875	INTRON Fur1
3L	8691843	3L_8691843_SNP [dm3] 3L_8698743_SNP [dm6]	G	A	4.548e^-4	0.875	INTERGENIC
2R	3841476	2R_3841476_SNP [dm3] 2R_7953971_SNP [dm6]	T	G	4.558e^-4	0.875	SYNONYMOUS_CODING CG14764	TF binding site mE1_TFBS_inv
3R	10530871	3R_10530871_SNP [dm3] 3R_14705149_SNP [dm6]	G	A	4.560e^-4	0.875	INTRON kibra
3R	22066062	3R_22066062_SNP [dm3] 3R_26240340_SNP [dm6]	T	C	4.572e^-4	0.875	INTRON CR42745
3L	8679571	3L_8679571_SNP [dm3] 3L_8686471_SNP [dm6]	C	G	4.575e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19583437	2L_19583437_SNP [dm3] 2L_19583437_SNP [dm6]	G	C	4.575e^-4	0.875	SYNONYMOUS_CODING CG10262 UPSTREAM Hakai & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17497712	3R_17497712_SNP [dm3] 3R_21671990_SNP [dm6]	A	T	4.582e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	17531987	3R_17531987_INS [dm3] 3R_21706265_INS [dm6]	G	GTCATGCTAATGTCTTTG...	4.586e^-4	0.875	INTRON CG31176
3R	23777445	3R_23777445_SNP [dm3] 3R_27951723_SNP [dm6]	C	T	4.590e^-4	0.875	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	703150	2L_703150_SNP [dm3] 2L_703150_SNP [dm6]	G	A	4.601e^-4	0.875	INTRON ds	TF binding site BDTNP1_TFBS_dl
2L	15297663	2L_15297663_SNP [dm3] 2L_15297663_SNP [dm6]	T	C	4.603e^-4	0.875	UPSTREAM CG15262 EXON CR43764
3R	26072480	3R_26072480_SNP [dm3] 3R_30246758_SNP [dm6]	C	A	4.607e^-4	0.875	UPSTREAM CG9733 INTERGENIC
3L	3350128	3L_3350128_SNP [dm3] 3L_3350128_SNP [dm6]	G	C	4.612e^-4	0.875	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2368280	2R_2368280_SNP [dm3] 2R_6480775_SNP [dm6]	T	G	4.616e^-4	0.875	INTERGENIC	transposable element FlyBase
3R	23670560	3R_23670560_DEL [dm3] 3R_27844838_DEL [dm6]	GG	G	4.618e^-4	0.875	UPSTREAM Or98P INTRON CG34353
3R	26036322	3R_26036322_SNP [dm3] 3R_30210600_SNP [dm6]	T	C	4.619e^-4	0.875	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
X	19859220	X_19859220_SNP [dm3] X_19965187_SNP [dm6]	A	T	4.621e^-4	0.875	INTRON Nep3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16630148	3L_16630148_SNP [dm3] 3L_16637048_SNP [dm6]	A	T	4.623e^-4	0.875	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16613896	2R_16613896_SNP [dm3] 2R_20726391_SNP [dm6]	T	C	4.632e^-4	0.875	INTRON dpr
3L	11805165	3L_11805165_SNP [dm3] 3L_11812065_SNP [dm6]	C	T	4.634e^-4	0.875	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5781305	3L_5781305_DEL [dm3] 3L_5788205_DEL [dm6]	ATCTCTTAATACA...	T	4.635e^-4	0.875	INTERGENIC
3R	10675398	3R_10675398_SNP [dm3] 3R_14849676_SNP [dm6]	G	A	4.637e^-4	0.875	INTRON btsz
3R	17939383	3R_17939383_DEL [dm3] 3R_22113661_DEL [dm6]	CTGAC	C	4.641e^-4	0.875	FRAME_SHIFT Ir94a
3L	13312102	3L_13312102_SNP [dm3] 3L_13319002_SNP [dm6]	G	A	4.641e^-4	0.875	INTERGENIC
3R	17497562	3R_17497562_SNP [dm3] 3R_21671840_SNP [dm6]	A	G	4.643e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	10270489	2R_10270489_SNP [dm3] 2R_14382984_SNP [dm6]	C	T	4.648e^-4	0.875	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	645327	3L_645327_SNP [dm3] 3L_645327_SNP [dm6]	C	A	4.653e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	21610629	3L_21610629_SNP [dm3] 3L_21617529_SNP [dm6]	A	C	4.672e^-4	0.875	UPSTREAM CG11307 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	20321376	X_20321376_SNP [dm3] X_20450349_SNP [dm6]	A	G	4.674e^-4	0.875	INTRON CG32506
3R	26862708	3R_26862708_SNP [dm3] 3R_31036986_SNP [dm6]	A	G	4.674e^-4	0.875	DOWNSTREAM CG33773 INTERGENIC
3L	18094972	3L_18094972_SNP [dm3] 3L_18101872_SNP [dm6]	C	T	4.674e^-4	0.875	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	16248356	3L_16248356_SNP [dm3] 3L_16255256_SNP [dm6]	G	T	4.682e^-4	0.875	DOWNSTREAM CG13054 INTERGENIC
X	20323856	X_20323856_SNP [dm3] X_20452829_SNP [dm6]	A	G	4.707e^-4	0.875	INTRON CG32506	TF binding site BDTNP1_TFBS_twi
3L	9103282	3L_9103282_SNP [dm3] 3L_9110182_SNP [dm6]	C	T	4.711e^-4	0.875	INTRON bol
3R	17497570	3R_17497570_SNP [dm3] 3R_21671848_SNP [dm6]	A	T	4.712e^-4	0.875	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	18834116	3L_18834116_SNP [dm3] 3L_18841016_SNP [dm6]	C	G	4.720e^-4	0.875	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16327457	3R_16327457_SNP [dm3] 3R_20501735_SNP [dm6]	A	G	4.725e^-4	0.875	UTR_5_PRIME Dic2 UPSTREAM Dic2
2L	7752488	2L_7752488_SNP [dm3] 2L_7752488_SNP [dm6]	T	G	4.738e^-4	0.875	SYNONYMOUS_CODING CG7203 UPSTREAM CR45718

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.652e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06008

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4074	0.067
In_3R_P	5.8972	0.0524

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2075 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10942750	2L_10942750_SNP [dm3] 2L_10942750_SNP [dm6]	C	T	1.243e^-7	0.233	DOWNSTREAM CR44493 INTRON dpr2 EXON CR44492
2L	7713170	2L_7713170_SNP [dm3] 2L_7713170_SNP [dm6]	A	G	3.408e^-7	0.261	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
2L	11384657	2L_11384657_SNP [dm3] 2L_11384657_SNP [dm6]	G	A	4.171e^-7	0.261	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	18895249	2R_18895249_INS [dm3] 2R_23007726_INS [dm6]	T	TT	7.958e^-7	0.373	INTRON twi	TF binding site BDTNP1_TFBS_twi
2R	1721390	2R_1721390_SNP [dm3] 2R_5833885_SNP [dm6]	G	T	1.247e^-6	0.468	INTRON dpr12
2L	1163763	2L_1163763_SNP [dm3] 2L_1163763_SNP [dm6]	T	C	1.555e^-6	0.486	UTR_5_PRIME CG5080 UPSTREAM IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2101048	2R_2101048_SNP [dm3] 2R_6213543_SNP [dm6]	G	A	2.148e^-6	0.503	SYNONYMOUS_CODING l_2_k14710	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2101829	2R_2101829_SNP [dm3] 2R_6214324_SNP [dm6]	C	G	2.148e^-6	0.503	UPSTREAM bin3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5410643	3L_5410643_SNP [dm3] 3L_5417543_SNP [dm6]	C	T	2.677e^-6	0.558	INTERGENIC
2L	2398200	2L_2398200_SNP [dm3] 2L_2398200_SNP [dm6]	T	C	4.301e^-6	0.706	INTRON VGlut
2L	11383900	2L_11383900_SNP [dm3] 2L_11383900_SNP [dm6]	C	T	4.951e^-6	0.706	INTERGENIC	regulatory region REDfly_CRMs
3L	16089539	3L_16089539_SNP [dm3] 3L_16096439_SNP [dm6]	G	A	5.061e^-6	0.706	SYNONYMOUS_CODING CG13074 DOWNSTREAM ClC-c	TF binding site mE1_TFBS_cad
3L	14722629	3L_14722629_SNP [dm3] 3L_14729529_SNP [dm6]	T	C	5.092e^-6	0.706	DOWNSTREAM CG13473 INTRON ome
2L	2398141	2L_2398141_SNP [dm3] 2L_2398141_SNP [dm6]	G	A	6.850e^-6	0.706	INTRON VGlut
3L	8145800	3L_8145800_SNP [dm3] 3L_8152700_SNP [dm6]	T	C	7.048e^-6	0.706	UPSTREAM CG13676 INTERGENIC
3L	14722582	3L_14722582_SNP [dm3] 3L_14729482_SNP [dm6]	C	T	7.842e^-6	0.706	DOWNSTREAM CG13473 INTRON ome
2L	3269338	2L_3269338_SNP [dm3] 2L_3269338_SNP [dm6]	T	G	7.898e^-6	0.706	UPSTREAM CG3347 DOWNSTREAM CR44484 INTERGENIC
2L	11380100	2L_11380100_SNP [dm3] 2L_11380100_SNP [dm6]	C	T	8.097e^-6	0.706	INTERGENIC	regulatory region REDfly_CRMs
2R	12022180	2R_12022180_SNP [dm3] 2R_16134675_SNP [dm6]	A	T	8.641e^-6	0.706	INTRON spin
2R	4526334	2R_4526334_SNP [dm3] 2R_8638829_SNP [dm6]	T	G	9.038e^-6	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1166232	2L_1166232_SNP [dm3] 2L_1166232_SNP [dm6]	C	T	9.987e^-6	0.706	SYNONYMOUS_CODING IntS14 UPSTREAM CG14341 DOWNSTREAM Plap	TF binding site mE1_TFBS_cad
2L	14657158	2L_14657158_SNP [dm3] 2L_14657158_SNP [dm6]	C	T	1.003e^-5	0.706	INTRON osp
2L	10939598	2L_10939598_SNP [dm3] 2L_10939598_SNP [dm6]	C	T	1.023e^-5	0.706	INTRON dpr2
3L	15703887	3L_15703887_SNP [dm3] 3L_15710787_SNP [dm6]	T	A	1.072e^-5	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	1.113e^-5	0.706	INTRON CG40470
2L	1188924	2L_1188924_SNP [dm3] 2L_1188924_SNP [dm6]	C	T	1.153e^-5	0.706	INTRON CG5001
3R	13115706	3R_13115706_SNP [dm3] 3R_17289984_SNP [dm6]	A	T	1.158e^-5	0.706	INTERGENIC
3L	16037894	3L_16037894_SNP [dm3] 3L_16044794_SNP [dm6]	A	G	1.207e^-5	0.706	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	10651277	3R_10651277_SNP [dm3] 3R_14825555_SNP [dm6]	C	G	1.218e^-5	0.706	SYNONYMOUS_CODING btsz
3L	5410645	3L_5410645_SNP [dm3] 3L_5417545_SNP [dm6]	G	A	1.236e^-5	0.706	INTERGENIC
3L	11623108	3L_11623108_SNP [dm3] 3L_11630008_SNP [dm6]	A	G	1.258e^-5	0.706	DOWNSTREAM mir-3642 & 1 other INTRON CG18815
3R	14779716	3R_14779716_SNP [dm3] 3R_18953994_SNP [dm6]	G	T	1.269e^-5	0.706	INTRON CG42613 & 1 other
2L	11381949	2L_11381949_SNP [dm3] 2L_11381949_SNP [dm6]	G	A	1.350e^-5	0.706	INTERGENIC	regulatory region REDfly_CRMs
X	18730781	X_18730781_SNP [dm3] X_18836748_SNP [dm6]	C	A	1.371e^-5	0.706	INTRON Pvf1
2R	2103781	2R_2103781_SNP [dm3] 2R_6216276_SNP [dm6]	A	T	1.377e^-5	0.706	INTRON bin3 EXON CR44161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16886570	3R_16886570_SNP [dm3] 3R_21060848_SNP [dm6]	G	T	1.399e^-5	0.706	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10573170	3R_10573170_SNP [dm3] 3R_14747448_SNP [dm6]	C	T	1.466e^-5	0.706	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2L	10818043	2L_10818043_SNP [dm3] 2L_10818043_SNP [dm6]	T	C	1.510e^-5	0.706	INTRON Nos
X	4942645	X_4942645_INS [dm3] X_5048612_INS [dm6]	A	AA	1.515e^-5	0.706	UTR_5_PRIME ovo INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10058253	2L_10058253_SNP [dm3] 2L_10058253_SNP [dm6]	A	C	1.645e^-5	0.706	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2093461	2R_2093461_SNP [dm3] 2R_6205956_SNP [dm6]	C	T	1.649e^-5	0.706	DOWNSTREAM CG30431 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1160441	2L_1160441_SNP [dm3] 2L_1160441_SNP [dm6]	G	A	1.686e^-5	0.706	UTR_3_PRIME CG5080 DOWNSTREAM Tango14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13769605	3L_13769605_SNP [dm3] 3L_13776505_SNP [dm6]	T	A	1.750e^-5	0.706	INTRON bru-3
X	9914472	X_9914472_SNP [dm3] X_10020439_SNP [dm6]	T	C	1.869e^-5	0.706	INTRON Cht6
3R	21731647	3R_21731647_SNP [dm3] 3R_25905925_SNP [dm6]	A	G	1.872e^-5	0.706	INTRON CR43259 EXON CR43259
3R	14668779	3R_14668779_SNP [dm3] 3R_18843057_SNP [dm6]	A	T	1.891e^-5	0.706	INTRON CG18208
3L	23841459	3L_23841459_SNP [dm3] 3L_23848359_SNP [dm6]	A	T	1.894e^-5	0.706	INTRON CG40470
2L	14651832	2L_14651832_SNP [dm3] 2L_14651832_SNP [dm6]	G	A	1.947e^-5	0.706	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14651833	2L_14651833_SNP [dm3] 2L_14651833_SNP [dm6]	A	G	1.947e^-5	0.706	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9586230	2L_9586230_SNP [dm3] 2L_9586230_SNP [dm6]	G	T	1.955e^-5	0.706	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
X	18730736	X_18730736_SNP [dm3] X_18836703_SNP [dm6]	A	T	1.977e^-5	0.706	INTRON Pvf1
2R	13092466	2R_13092466_SNP [dm3] 2R_17204961_SNP [dm6]	C	T	1.983e^-5	0.706	UPSTREAM CG43237 INTERGENIC
3R	13355181	3R_13355181_SNP [dm3] 3R_17529459_SNP [dm6]	G	T	2.005e^-5	0.706	INTERGENIC
2L	2398040	2L_2398040_SNP [dm3] 2L_2398040_SNP [dm6]	A	G	2.122e^-5	0.706	INTRON VGlut
2L	7711603	2L_7711603_SNP [dm3] 2L_7711603_SNP [dm6]	T	C	2.149e^-5	0.706	SPLICE_SITE_DONOR Ntl DOWNSTREAM Tep3 INTRON Ntl & 1 other
3L	23880121	3L_23880121_SNP [dm3] 3L_23887021_SNP [dm6]	T	A	2.211e^-5	0.706	INTRON CG40470
2R	19108123	2R_19108123_SNP [dm3] 2R_23220600_SNP [dm6]	A	G	2.323e^-5	0.706	INTERGENIC
3R	17928836	3R_17928836_SNP [dm3] 3R_22103114_SNP [dm6]	C	T	2.341e^-5	0.706	UPSTREAM CG13407 INTRON CG5778
3R	10698524	3R_10698524_SNP [dm3] 3R_14872802_SNP [dm6]	T	C	2.360e^-5	0.706	INTRON btsz
3L	11623157	3L_11623157_SNP [dm3] 3L_11630057_SNP [dm6]	G	T	2.375e^-5	0.706	DOWNSTREAM mir-3642 & 1 other INTRON CG18815
X	22261517	X_22261517_SNP [dm3] X_22859681_SNP [dm6]	C	A	2.394e^-5	0.706	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16894944	3R_16894944_SNP [dm3] 3R_21069222_SNP [dm6]	T	A	2.401e^-5	0.706	INTRON AnxB9	TF binding site mE1_TFBS_HSA
2L	11380665	2L_11380665_DEL [dm3] 2L_11380665_DEL [dm6]	AATTATAAAAGCTACGGCGC...	A	2.403e^-5	0.706	INTERGENIC	regulatory region REDfly_CRMs
3L	16037905	3L_16037905_SNP [dm3] 3L_16044805_SNP [dm6]	A	T	2.411e^-5	0.706	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	11380654	2L_11380654_SNP [dm3] 2L_11380654_SNP [dm6]	G	A	2.658e^-5	0.739	INTERGENIC	regulatory region REDfly_CRMs
2L	12050194	2L_12050194_SNP [dm3] 2L_12050194_SNP [dm6]	A	G	2.712e^-5	0.739	SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo
X	4329960	X_4329960_SNP [dm3] X_4435927_SNP [dm6]	A	T	2.721e^-5	0.739	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2103352	2R_2103352_SNP [dm3] 2R_6215847_SNP [dm6]	C	A	2.732e^-5	0.739	DOWNSTREAM CR44161 INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10573227	3R_10573227_SNP [dm3] 3R_14747505_SNP [dm6]	C	A	2.750e^-5	0.739	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2R	16251761	2R_16251761_SNP [dm3] 2R_20364256_SNP [dm6]	T	C	2.758e^-5	0.739	INTERGENIC
X	22260473	X_22260473_SNP [dm3] X_22858637_SNP [dm6]	A	G	2.936e^-5	0.756	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9344821	2L_9344821_SNP [dm3] 2L_9344821_SNP [dm6]	T	A	2.941e^-5	0.756	DOWNSTREAM CG3748 INTERGENIC
3L	15703886	3L_15703886_SNP [dm3] 3L_15710786_SNP [dm6]	T	C	2.978e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13597908	3L_13597908_SNP [dm3] 3L_13604808_SNP [dm6]	A	C	2.984e^-5	0.756	INTRON bru-3
3R	19908294	3R_19908294_SNP [dm3] 3R_24082572_SNP [dm6]	A	T	3.152e^-5	0.779	INTRON 4EHP
3L	3013542	3L_3013542_SNP [dm3] 3L_3013542_SNP [dm6]	T	A	3.184e^-5	0.779	INTERGENIC
3R	20350386	3R_20350386_SNP [dm3] 3R_24524664_SNP [dm6]	T	C	3.198e^-5	0.779	UPSTREAM CG13622 & 1 other INTERGENIC
3R	2981679	3R_2981679_SNP [dm3] 3R_7155957_SNP [dm6]	T	G	3.276e^-5	0.788	UPSTREAM MAGE INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	13857789	3R_13857789_SNP [dm3] 3R_18032067_SNP [dm6]	T	C	3.424e^-5	0.792	INTERGENIC
3L	3145052	3L_3145052_SNP [dm3] 3L_3145052_SNP [dm6]	C	T	3.431e^-5	0.792	NON_SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4119446	X_4119446_SNP [dm3] X_4225413_SNP [dm6]	A	C	3.472e^-5	0.792	INTERGENIC
2L	2398025	2L_2398025_SNP [dm3] 2L_2398025_SNP [dm6]	A	G	3.498e^-5	0.792	INTRON VGlut
2R	1965316	2R_1965316_SNP [dm3] 2R_6077811_SNP [dm6]	A	G	3.530e^-5	0.792	SYNONYMOUS_CODING CG7849 DOWNSTREAM CG14590
3L	23945762	3L_23945762_SNP [dm3] 3L_23952662_SNP [dm6]	G	A	3.573e^-5	0.792	INTRON CG40470
2L	10830399	2L_10830399_SNP [dm3] 2L_10830399_SNP [dm6]	G	C	3.618e^-5	0.792	INTRON Nos
3R	13379336	3R_13379336_SNP [dm3] 3R_17553614_SNP [dm6]	C	T	3.630e^-5	0.792	INTERGENIC
3L	13769604	3L_13769604_SNP [dm3] 3L_13776504_SNP [dm6]	C	A	3.772e^-5	0.803	INTRON bru-3
3L	18485233	3L_18485233_SNP [dm3] 3L_18492133_SNP [dm6]	A	G	3.779e^-5	0.803	INTRON AstC-R2
X	4942687	X_4942687_INS [dm3] X_5048654_INS [dm6]	A	AA	3.811e^-5	0.803	UTR_5_PRIME ovo INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16121690	2L_16121690_SNP [dm3] 2L_16121690_SNP [dm6]	A	T	3.938e^-5	0.809	INTERGENIC
3R	10698688	3R_10698688_SNP [dm3] 3R_14872966_SNP [dm6]	A	G	4.045e^-5	0.809	INTRON btsz
3L	13769594	3L_13769594_SNP [dm3] 3L_13776494_SNP [dm6]	A	T	4.050e^-5	0.809	INTRON bru-3
3L	24371897	3L_24371897_SNP [dm3] 3L_24378797_SNP [dm6]	G	C	4.080e^-5	0.809	INTRON nvd
3L	16498892	3L_16498892_SNP [dm3] 3L_16505792_SNP [dm6]	G	C	4.146e^-5	0.809	INTRON CG43373
3R	19736429	3R_19736429_SNP [dm3] 3R_23910707_SNP [dm6]	T	C	4.217e^-5	0.809	INTRON sba
2L	2398033	2L_2398033_SNP [dm3] 2L_2398033_SNP [dm6]	C	G	4.256e^-5	0.809	INTRON VGlut
X	6834427	X_6834427_SNP [dm3] X_6940394_SNP [dm6]	G	A	4.276e^-5	0.809	INTRON CG14431
2L	9344508	2L_9344508_DEL [dm3] 2L_9344508_DEL [dm6]	TC	T	4.283e^-5	0.809	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	13873863	2L_13873863_SNP [dm3] 2L_13873863_SNP [dm6]	T	G	4.326e^-5	0.809	INTRON CenG1A
3L	336811	3L_336811_SNP [dm3] 3L_336811_SNP [dm6]	C	T	4.429e^-5	0.809	INTRON Ptpmeg & 1 other
2R	4526622	2R_4526622_SNP [dm3] 2R_8639117_SNP [dm6]	G	A	4.441e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15703899	3L_15703899_SNP [dm3] 3L_15710799_SNP [dm6]	G	T	4.447e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26459341	3R_26459341_SNP [dm3] 3R_30633619_SNP [dm6]	C	T	4.453e^-5	0.809	INTERGENIC
3L	8779443	3L_8779443_SNP [dm3] 3L_8786343_SNP [dm6]	T	A	4.484e^-5	0.809	SYNONYMOUS_CODING Fhos
3R	13369295	3R_13369295_SNP [dm3] 3R_17543573_SNP [dm6]	A	C	4.622e^-5	0.81	SYNONYMOUS_CODING SF1 UTR_3_PRIME SF1 DOWNSTREAM SF1
3L	4348278	3L_4348278_DEL [dm3] 3L_4348278_DEL [dm6]	TGCTA	C	4.630e^-5	0.81	DOWNSTREAM CR45156 INTRON Cip4
2R	19895704	2R_19895704_SNP [dm3] 2R_24008181_SNP [dm6]	T	A	4.631e^-5	0.81	INTRON Unc-89	TF binding site mE1_TFBS_cad
3R	17531664	3R_17531664_SNP [dm3] 3R_21705942_SNP [dm6]	T	A	4.663e^-5	0.81	INTRON CG31176
2L	9344266	2L_9344266_SNP [dm3] 2L_9344266_SNP [dm6]	T	C	4.850e^-5	0.823	SYNONYMOUS_CODING CG3748
2L	10989975	2L_10989975_SNP [dm3] 2L_10989975_SNP [dm6]	G	A	4.853e^-5	0.823	SPLICE_SITE_REGION CG16833 START_GAINED CG16833 UTR_5_PRIME CG16833 DOWNSTREAM CG12253 INTRON CG16833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11383860	2L_11383860_SNP [dm3] 2L_11383860_SNP [dm6]	C	T	4.873e^-5	0.823	INTERGENIC	regulatory region REDfly_CRMs
3R	9796460	3R_9796460_DEL [dm3] 3R_13970738_DEL [dm6]	AGTCAACA	A	5.130e^-5	0.853	UPSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	13379492	3R_13379492_SNP [dm3] 3R_17553770_SNP [dm6]	T	A	5.138e^-5	0.853	INTERGENIC
2R	14820682	2R_14820682_SNP [dm3] 2R_18933177_SNP [dm6]	A	G	5.575e^-5	0.867	INTRON sano
3L	2045962	3L_2045962_SNP [dm3] 3L_2045962_SNP [dm6]	A	G	5.783e^-5	0.867	SYNONYMOUS_CODING sls INTRON sls
X	22266569	X_22266569_SNP [dm3] X_22864733_SNP [dm6]	A	C	5.861e^-5	0.867	INTRON CG42346
3R	23797129	3R_23797129_SNP [dm3] 3R_27971407_SNP [dm6]	A	T	5.895e^-5	0.867	INTRON betaTub97EF
3L	16482035	3L_16482035_SNP [dm3] 3L_16488935_SNP [dm6]	C	T	5.896e^-5	0.867	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11141462	3R_11141462_SNP [dm3] 3R_15315740_SNP [dm6]	C	G	5.991e^-5	0.867	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11623008	3L_11623008_SNP [dm3] 3L_11629908_SNP [dm6]	C	G	6.039e^-5	0.867	UTR_3_PRIME CG18815 DOWNSTREAM mir-3642 INTRON CG18815
3R	900722	3R_900722_SNP [dm3] 3R_5075000_SNP [dm6]	G	T	6.108e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10834808	2L_10834808_SNP [dm3] 2L_10834808_SNP [dm6]	C	A	6.164e^-5	0.867	INTRON Nos
2L	8416114	2L_8416114_SNP [dm3] 2L_8416114_SNP [dm6]	C	T	6.261e^-5	0.867	UPSTREAM CG13398 INTRON Akap200	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	8235997	X_8235997_SNP [dm3] X_8341964_SNP [dm6]	G	A	6.301e^-5	0.867	INTRON nAChRalpha3
3L	16037459	3L_16037459_INS [dm3] 3L_16044359_INS [dm6]	G	GACTG	6.371e^-5	0.867	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	15568636	3L_15568636_SNP [dm3] 3L_15575536_SNP [dm6]	T	G	6.506e^-5	0.867	INTRON CG6498
2R	8009740	2R_8009740_SNP [dm3] 2R_12122235_SNP [dm6]	T	C	6.577e^-5	0.867	INTERGENIC
3L	15568654	3L_15568654_SNP [dm3] 3L_15575554_SNP [dm6]	G	C	6.586e^-5	0.867	NON_SYNONYMOUS_CODING CG6498 SPLICE_SITE_REGION CG6498
3L	4997941	3L_4997941_SNP [dm3] 3L_4997941_SNP [dm6]	T	A	6.586e^-5	0.867	INTRON Con
3L	951457	3L_951457_SNP [dm3] 3L_951457_SNP [dm6]	A	T	6.606e^-5	0.867	INTRON Glut1
X	8236001	X_8236001_SNP [dm3] X_8341968_SNP [dm6]	T	C	6.629e^-5	0.867	INTRON nAChRalpha3
3R	13385748	3R_13385748_SNP [dm3] 3R_17560026_SNP [dm6]	C	T	6.715e^-5	0.867	SYNONYMOUS_CODING Hmx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9344787	2L_9344787_SNP [dm3] 2L_9344787_SNP [dm6]	T	C	6.744e^-5	0.867	DOWNSTREAM CG3748 INTERGENIC
2L	9344774	2L_9344774_SNP [dm3] 2L_9344774_SNP [dm6]	T	A	6.857e^-5	0.867	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3R	21731343	3R_21731343_SNP [dm3] 3R_25905621_SNP [dm6]	T	C	6.865e^-5	0.867	DOWNSTREAM CR43259 INTRON CR43259
2R	10711946	2R_10711946_SNP [dm3] 2R_14824441_SNP [dm6]	T	C	6.874e^-5	0.867	UPSTREAM CR45329 INTERGENIC
X	15639389	X_15639389_SNP [dm3] X_15745356_SNP [dm6]	G	A	6.984e^-5	0.867	SYNONYMOUS_CODING CG8944
3L	1063024	3L_1063024_SNP [dm3] 3L_1063024_SNP [dm6]	C	T	7.020e^-5	0.867	INTRON bab1
2L	10945543	2L_10945543_SNP [dm3] 2L_10945543_SNP [dm6]	T	C	7.052e^-5	0.867	INTRON dpr2
3R	17705149	3R_17705149_SNP [dm3] 3R_21879427_SNP [dm6]	T	G	7.073e^-5	0.867	UPSTREAM CG34148 INTRON P5CDh2 EXON CR45046	TF binding site mE1_TFBS_sens
3R	26460046	3R_26460046_DEL [dm3] 3R_30634324_DEL [dm6]	TT	T	7.263e^-5	0.867	INTERGENIC
3L	13613750	3L_13613750_SNP [dm3] 3L_13620650_SNP [dm6]	C	T	7.284e^-5	0.867	UPSTREAM mir-289 INTRON bru-3
2R	2818272	2R_2818272_SNP [dm3] 2R_6930767_SNP [dm6]	G	A	7.289e^-5	0.867	INTRON mim
3R	25396900	3R_25396900_SNP [dm3] 3R_29571178_SNP [dm6]	A	T	7.296e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9284908	3R_9284908_SNP [dm3] 3R_13459186_SNP [dm6]	T	C	7.297e^-5	0.867	INTRON CR17025 & 1 other
X	18847357	X_18847357_SNP [dm3] X_18953324_SNP [dm6]	T	A	7.373e^-5	0.867	INTRON CG43759
3L	15703870	3L_15703870_SNP [dm3] 3L_15710770_SNP [dm6]	T	A	7.474e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11384062	2L_11384062_SNP [dm3] 2L_11384062_SNP [dm6]	T	G	7.584e^-5	0.867	INTERGENIC	regulatory region REDfly_CRMs
2L	11381964	2L_11381964_SNP [dm3] 2L_11381964_SNP [dm6]	A	G	7.648e^-5	0.867	INTERGENIC	regulatory region REDfly_CRMs
2R	13140148	2R_13140148_SNP [dm3] 2R_17252643_SNP [dm6]	A	T	7.767e^-5	0.867	INTRON mbl	TF binding site BDTNP1_TFBS_twi
X	21328448	X_21328448_SNP [dm3] X_21457421_SNP [dm6]	G	A	7.811e^-5	0.867	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	8145763	3L_8145763_SNP [dm3] 3L_8152663_SNP [dm6]	T	A	7.858e^-5	0.867	UPSTREAM CG13676 INTERGENIC
2R	2093093	2R_2093093_SNP [dm3] 2R_6205588_SNP [dm6]	A	T	7.879e^-5	0.867	DOWNSTREAM CG30431 INTERGENIC
3R	23732387	3R_23732387_SNP [dm3] 3R_27906665_SNP [dm6]	C	G	7.888e^-5	0.867	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23953755	3L_23953755_SNP [dm3] 3L_23960655_SNP [dm6]	T	C	7.952e^-5	0.867	INTRON CG40470
X	18982148	X_18982148_SNP [dm3] X_19088115_SNP [dm6]	C	T	8.144e^-5	0.867	INTERGENIC
3L	13618736	3L_13618736_SNP [dm3] 3L_13625636_SNP [dm6]	C	A	8.186e^-5	0.867	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	22260448	X_22260448_DEL [dm3] X_22858612_DEL [dm6]	AGGGGGGAA	A	8.222e^-5	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13769590	3L_13769590_SNP [dm3] 3L_13776490_SNP [dm6]	C	T	8.253e^-5	0.867	INTRON bru-3
2L	13849546	2L_13849546_SNP [dm3] 2L_13849546_SNP [dm6]	C	A	8.264e^-5	0.867	SYNONYMOUS_CODING CG7968 DOWNSTREAM CG7953 INTRON CenG1A
2L	14978230	2L_14978230_SNP [dm3] 2L_14978230_SNP [dm6]	A	T	8.308e^-5	0.867	INTRON mol
X	22260445	X_22260445_INS [dm3] X_22858609_INS [dm6]	T	TCATCATATCAAAGAAGATA...	8.423e^-5	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18841604	3L_18841604_SNP [dm3] 3L_18848504_SNP [dm6]	T	C	8.506e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9455403	3R_9455403_SNP [dm3] 3R_13629681_SNP [dm6]	C	T	8.540e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13769591	3L_13769591_SNP [dm3] 3L_13776491_SNP [dm6]	C	T	8.694e^-5	0.867	INTRON bru-3
2R	14820452	2R_14820452_SNP [dm3] 2R_18932947_SNP [dm6]	G	C	8.788e^-5	0.867	INTRON sano
3L	21140885	3L_21140885_SNP [dm3] 3L_21147785_SNP [dm6]	C	T	8.796e^-5	0.867	NON_SYNONYMOUS_CODING Ac78C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	11383902	2L_11383902_DEL [dm3] 2L_11383902_DEL [dm6]	ATG	A	8.803e^-5	0.867	INTERGENIC	regulatory region REDfly_CRMs
3L	23731875	3L_23731875_SNP [dm3] 3L_23738775_SNP [dm6]	G	A	8.864e^-5	0.867	INTRON CG17698	transposable element FlyBase
3R	13346792	3R_13346792_SNP [dm3] 3R_17521070_SNP [dm6]	C	A	8.882e^-5	0.867	INTERGENIC
2L	13040469	2L_13040469_SNP [dm3] 2L_13040469_SNP [dm6]	T	A	8.883e^-5	0.867	INTRON CG9932
2R	14820706	2R_14820706_SNP [dm3] 2R_18933201_SNP [dm6]	T	A	9.013e^-5	0.867	INTRON sano
4	441485	4_441485_SNP [dm3] 4_420859_SNP [dm6]	G	T	9.028e^-5	0.867	INTERGENIC	transposable element FlyBase
3R	15754533	3R_15754533_SNP [dm3] 3R_19928811_SNP [dm6]	T	C	9.108e^-5	0.867	UPSTREAM CG4459 DOWNSTREAM Hs6st INTERGENIC	TF binding site mE1_TFBS_cad
3R	3396036	3R_3396036_SNP [dm3] 3R_7570314_SNP [dm6]	C	A	9.128e^-5	0.867	UTR_3_PRIME CG34127 DOWNSTREAM CG34127
X	21912017	X_21912017_SNP [dm3] X_22510181_SNP [dm6]	G	A	9.134e^-5	0.867	INTERGENIC	transposable element FlyBase
2L	7677273	2L_7677273_SNP [dm3] 2L_7677273_SNP [dm6]	T	A	9.220e^-5	0.867	INTRON Myo28B1
X	22260651	X_22260651_SNP [dm3] X_22858815_SNP [dm6]	C	T	9.296e^-5	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16604748	X_16604748_SNP [dm3] X_16710715_SNP [dm6]	G	C	9.300e^-5	0.867	UPSTREAM CG13008 DOWNSTREAM CG4678 INTRON CG4678
3L	23995373	3L_23995373_INS [dm3] 3L_24002273_INS [dm6]	C	CATCTCCAG	9.402e^-5	0.867	INTERGENIC
2L	2512650	2L_2512650_SNP [dm3] 2L_2512650_SNP [dm6]	A	C	9.459e^-5	0.867	INTERGENIC
3R	27012768	3R_27012768_SNP [dm3] 3R_31187046_SNP [dm6]	C	A	9.489e^-5	0.867	INTRON mesh
2L	9344790	2L_9344790_SNP [dm3] 2L_9344790_SNP [dm6]	T	G	9.508e^-5	0.867	DOWNSTREAM CG3748 INTERGENIC
3L	7965745	3L_7965745_SNP [dm3] 3L_7972645_SNP [dm6]	A	G	9.508e^-5	0.867	SYNONYMOUS_CODING CG8042 DOWNSTREAM RNaseX25
3R	3482818	3R_3482818_SNP [dm3] 3R_7657096_SNP [dm6]	T	G	9.550e^-5	0.867	INTERGENIC
3L	17368319	3L_17368319_INS [dm3] 3L_17375219_INS [dm6]	C	CC	9.574e^-5	0.867	INTRON Cad74A
3R	18529333	3R_18529333_SNP [dm3] 3R_22703611_SNP [dm6]	G	T	9.576e^-5	0.867	DOWNSTREAM CG13842 INTRON CG6972	TF binding site mE1_TFBS_inv
3L	8427479	3L_8427479_INS [dm3] 3L_8434379_INS [dm6]	G	GATTGGTAGCCTGCTCGGTT...	9.644e^-5	0.867	UTR_3_PRIME Unr
3R	22115594	3R_22115594_SNP [dm3] 3R_26289872_SNP [dm6]	G	A	9.782e^-5	0.867	INTERGENIC
2L	1157138	2L_1157138_SNP [dm3] 2L_1157138_SNP [dm6]	C	T	9.794e^-5	0.867	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	23950103	3L_23950103_SNP [dm3] 3L_23957003_SNP [dm6]	G	A	9.818e^-5	0.867	INTRON CG40470
3L	23656225	3L_23656225_SNP [dm3] 3L_23663125_SNP [dm6]	A	T	9.822e^-5	0.867	INTRON AGO3
3L	3106074	3L_3106074_DEL [dm3] 3L_3106074_DEL [dm6]	CC	C	9.894e^-5	0.867	INTRON Cht7
3L	23841621	3L_23841621_SNP [dm3] 3L_23848521_SNP [dm6]	A	C	9.919e^-5	0.867	INTRON CG40470
3L	16916586	3L_16916586_SNP [dm3] 3L_16923486_SNP [dm6]	A	G	9.944e^-5	0.867	SYNONYMOUS_CODING CG13028 DOWNSTREAM Lmpt & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14820711	2R_14820711_SNP [dm3] 2R_18933206_SNP [dm6]	G	A	9.952e^-5	0.867	INTRON sano
2R	19921732	2R_19921732_SNP [dm3] 2R_24034209_SNP [dm6]	A	C	9.970e^-5	0.867	UTR_5_PRIME MAN1 UPSTREAM MAN1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	1404184	2L_1404184_SNP [dm3] 2L_1404184_SNP [dm6]	T	A	9.972e^-5	0.867	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
3R	13802855	3R_13802855_SNP [dm3] 3R_17977133_SNP [dm6]	A	G	1.015e^-4	0.867	INTRON cpo
2R	1746722	2R_1746722_SNP [dm3] 2R_5859217_SNP [dm6]	G	T	1.018e^-4	0.867	UTR_3_PRIME dpr12
3R	17705166	3R_17705166_SNP [dm3] 3R_21879444_SNP [dm6]	G	T	1.028e^-4	0.867	UPSTREAM CG34148 INTRON P5CDh2 EXON CR45046	TF binding site mE1_TFBS_sens
3R	17656963	3R_17656963_SNP [dm3] 3R_21831241_SNP [dm6]	C	T	1.029e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23615376	3R_23615376_SNP [dm3] 3R_27789654_SNP [dm6]	C	T	1.030e^-4	0.867	INTRON CG34353
2L	1907291	2L_1907291_SNP [dm3] 2L_1907291_SNP [dm6]	A	C	1.036e^-4	0.867	INTRON CG7337
2L	7756056	2L_7756056_SNP [dm3] 2L_7756056_SNP [dm6]	G	T	1.036e^-4	0.867	UPSTREAM CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo
3R	3462562	3R_3462562_SNP [dm3] 3R_7636840_SNP [dm6]	C	T	1.037e^-4	0.867	INTRON CG34127
2L	9235611	2L_9235611_SNP [dm3] 2L_9235611_SNP [dm6]	C	G	1.043e^-4	0.867	DOWNSTREAM tRNA:CR31885 INTRON tai
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	1.045e^-4	0.867	UPSTREAM CG43366 INTERGENIC
3L	11622928	3L_11622928_SNP [dm3] 3L_11629828_SNP [dm6]	A	G	1.048e^-4	0.867	UTR_3_PRIME CG18815 DOWNSTREAM mir-3642 INTRON CG18815
2L	8338500	2L_8338500_SNP [dm3] 2L_8338500_SNP [dm6]	T	G	1.051e^-4	0.867	INTRON CG14274
2L	1157899	2L_1157899_SNP [dm3] 2L_1157899_SNP [dm6]	A	T	1.060e^-4	0.867	UPSTREAM Tango14 DOWNSTREAM CR43767 INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	21795702	2L_21795702_DEL [dm3] 2L_21795702_DEL [dm6]	TATTTGGAT	T	1.062e^-4	0.867	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	9342499	2L_9342499_SNP [dm3] 2L_9342499_SNP [dm6]	C	T	1.065e^-4	0.867	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3R	22480614	3R_22480614_SNP [dm3] 3R_26654892_SNP [dm6]	T	A	1.068e^-4	0.867	INTRON beat-VII	TF binding site mE1_TFBS_bab1
3L	23679250	3L_23679250_SNP [dm3] 3L_23686150_SNP [dm6]	C	G	1.070e^-4	0.867	INTRON AGO3
2R	16662314	2R_16662314_SNP [dm3] 2R_20774809_SNP [dm6]	A	G	1.085e^-4	0.867	NON_SYNONYMOUS_CODING CG13443 DOWNSTREAM CG43709	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18869236	3L_18869236_SNP [dm3] 3L_18876136_SNP [dm6]	C	T	1.098e^-4	0.867	SYNONYMOUS_CODING Ugt
2R	14820672	2R_14820672_SNP [dm3] 2R_18933167_SNP [dm6]	A	C	1.100e^-4	0.867	INTRON sano
3R	26459150	3R_26459150_SNP [dm3] 3R_30633428_SNP [dm6]	G	A	1.108e^-4	0.867	INTERGENIC
2L	10908329	2L_10908329_SNP [dm3] 2L_10908329_SNP [dm6]	G	A	1.109e^-4	0.867	SYNONYMOUS_CODING CG7309
3L	23952259	3L_23952259_INS [dm3] 3L_23959159_INS [dm6]	T	TTTTCAAATAAACTATCAAT...	1.111e^-4	0.867	INTRON CG40470
3L	13597863	3L_13597863_SNP [dm3] 3L_13604763_SNP [dm6]	G	T	1.133e^-4	0.867	INTRON bru-3
3R	3229274	3R_3229274_SNP [dm3] 3R_7403552_SNP [dm6]	T	A	1.134e^-4	0.867	INTERGENIC
X	2662272	X_2662272_SNP [dm3] X_2768239_SNP [dm6]	G	A	1.135e^-4	0.867	INTRON kirre
3R	13114680	3R_13114680_SNP [dm3] 3R_17288958_SNP [dm6]	T	A	1.136e^-4	0.867	DOWNSTREAM CR43490 INTERGENIC
3R	19942141	3R_19942141_SNP [dm3] 3R_24116419_SNP [dm6]	A	G	1.143e^-4	0.867	UPSTREAM CG13607 INTRON Rootletin
3L	8146439	3L_8146439_DEL [dm3] 3L_8153339_DEL [dm6]	AA	A	1.146e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13599478	3L_13599478_SNP [dm3] 3L_13606378_SNP [dm6]	C	T	1.153e^-4	0.867	INTRON bru-3
2L	11407172	2L_11407172_SNP [dm3] 2L_11407172_SNP [dm6]	C	G	1.154e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
2R	13140149	2R_13140149_SNP [dm3] 2R_17252644_SNP [dm6]	T	A	1.165e^-4	0.867	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	20840896	2L_20840896_SNP [dm3] 2L_20840896_SNP [dm6]	A	G	1.171e^-4	0.867	UTR_5_PRIME CG31676	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	12586454	2L_12586454_DEL [dm3] 2L_12586454_DEL [dm6]	TT	T	1.186e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	22422086	3L_22422086_DEL [dm3] 3L_22428986_DEL [dm6]	TTCAGAAATCTAG...	T	1.194e^-4	0.867	INTERGENIC
2R	18121238	2R_18121238_SNP [dm3] 2R_22233733_SNP [dm6]	A	T	1.196e^-4	0.867	INTERGENIC
2R	8789839	2R_8789839_SNP [dm3] 2R_12902334_SNP [dm6]	T	C	1.197e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22210360	3L_22210360_SNP [dm3] 3L_22217260_SNP [dm6]	T	C	1.199e^-4	0.867	INTRON olf413
2L	1157134	2L_1157134_SNP [dm3] 2L_1157134_SNP [dm6]	G	A	1.201e^-4	0.867	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1161236	2L_1161236_SNP [dm3] 2L_1161236_SNP [dm6]	G	A	1.205e^-4	0.867	INTRON CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	496532	3L_496532_SNP [dm3] 3L_496532_SNP [dm6]	T	C	1.220e^-4	0.867	INTRON klar
X	22266810	X_22266810_SNP [dm3] X_22864974_SNP [dm6]	T	C	1.222e^-4	0.867	INTRON CG42346
X	22261509	X_22261509_SNP [dm3] X_22859673_SNP [dm6]	C	T	1.225e^-4	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19222494	3R_19222494_SNP [dm3] 3R_23396772_SNP [dm6]	T	C	1.227e^-4	0.867	INTERGENIC
2L	8339211	2L_8339211_SNP [dm3] 2L_8339211_SNP [dm6]	T	A	1.239e^-4	0.867	INTRON CG14274
3L	4653219	3L_4653219_SNP [dm3] 3L_4653219_SNP [dm6]	C	T	1.242e^-4	0.867	INTRON axo
2L	4347687	2L_4347687_SNP [dm3] 2L_4347687_SNP [dm6]	A	T	1.243e^-4	0.867	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9449299	3R_9449299_SNP [dm3] 3R_13623577_SNP [dm6]	C	G	1.244e^-4	0.867	INTERGENIC
2L	7713766	2L_7713766_SNP [dm3] 2L_7713766_SNP [dm6]	A	G	1.247e^-4	0.867	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
2L	12586402	2L_12586402_SNP [dm3] 2L_12586402_SNP [dm6]	T	G	1.252e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1164135	2L_1164135_SNP [dm3] 2L_1164135_SNP [dm6]	G	A	1.255e^-4	0.867	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11366625	2L_11366625_SNP [dm3] 2L_11366625_SNP [dm6]	T	C	1.258e^-4	0.867	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13379359	3R_13379359_SNP [dm3] 3R_17553637_SNP [dm6]	T	G	1.271e^-4	0.867	INTERGENIC
3L	13250316	3L_13250316_SNP [dm3] 3L_13257216_SNP [dm6]	G	A	1.271e^-4	0.867	INTRON caps
2L	10939599	2L_10939599_SNP [dm3] 2L_10939599_SNP [dm6]	G	T	1.272e^-4	0.867	INTRON dpr2
3R	14026805	3R_14026805_SNP [dm3] 3R_18201083_SNP [dm6]	C	T	1.275e^-4	0.867	INTRON CG7985
3R	13351250	3R_13351250_SNP [dm3] 3R_17525528_SNP [dm6]	A	G	1.282e^-4	0.867	INTERGENIC
2L	2398032	2L_2398032_SNP [dm3] 2L_2398032_SNP [dm6]	A	C	1.293e^-4	0.867	INTRON VGlut
2L	2184658	2L_2184658_DEL [dm3] 2L_2184658_DEL [dm6]	ACA	A	1.294e^-4	0.867	EXON CR43751	regulatory region REDfly_CRMs
X	16604730	X_16604730_SNP [dm3] X_16710697_SNP [dm6]	G	A	1.301e^-4	0.867	UPSTREAM CG13008 DOWNSTREAM CG4678 INTRON CG4678
3L	6958604	3L_6958604_SNP [dm3] 3L_6965504_SNP [dm6]	G	T	1.304e^-4	0.867	NON_SYNONYMOUS_CODING CG10064 UPSTREAM sgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14682271	3L_14682271_INS [dm3] 3L_14689171_INS [dm6]	T	TA	1.312e^-4	0.867	INTRON ome
3R	26460058	3R_26460058_SNP [dm3] 3R_30634336_SNP [dm6]	G	A	1.314e^-4	0.867	INTERGENIC
2R	18905975	2R_18905975_SNP [dm3] 2R_23018452_SNP [dm6]	C	A	1.328e^-4	0.867	INTRON twi & 1 other
2L	7339348	2L_7339348_SNP [dm3] 2L_7339348_SNP [dm6]	T	A	1.328e^-4	0.867	INTRON Wnt6
2R	19695524	2R_19695524_SNP [dm3] 2R_23808001_SNP [dm6]	G	A	1.332e^-4	0.867	SYNONYMOUS_CODING Ssrp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26165516	3R_26165516_SNP [dm3] 3R_30339794_SNP [dm6]	T	A	1.344e^-4	0.867	INTRON hdc
2L	562807	2L_562807_SNP [dm3] 2L_562807_SNP [dm6]	C	T	1.350e^-4	0.867	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	2447270	2L_2447270_SNP [dm3] 2L_2447270_SNP [dm6]	C	T	1.355e^-4	0.867	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	13591690	3L_13591690_SNP [dm3] 3L_13598590_SNP [dm6]	C	A	1.358e^-4	0.867	UPSTREAM CR45120 INTRON bru-3
2L	1157964	2L_1157964_SNP [dm3] 2L_1157964_SNP [dm6]	A	G	1.369e^-4	0.867	UPSTREAM Tango14 DOWNSTREAM CR43767 INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19908347	3R_19908347_SNP [dm3] 3R_24082625_SNP [dm6]	A	G	1.371e^-4	0.867	INTRON 4EHP
3R	19736508	3R_19736508_SNP [dm3] 3R_23910786_SNP [dm6]	G	A	1.372e^-4	0.867	INTRON sba
X	5097000	X_5097000_INS [dm3] X_5202967_INS [dm6]	C	CTATTTTC	1.378e^-4	0.867	INTRON rg & 1 other
2R	1762259	2R_1762259_SNP [dm3] 2R_5874754_SNP [dm6]	A	C	1.380e^-4	0.867	INTERGENIC
3L	3559398	3L_3559398_INS [dm3] 3L_3559398_INS [dm6]	CA	GCTG	1.380e^-4	0.867	INTRON Eip63E
2R	7073663	2R_7073663_INS [dm3] 2R_11186158_INS [dm6]	A	ACA	1.387e^-4	0.867	INTRON shn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	8712598	3L_8712598_SNP [dm3] 3L_8719498_SNP [dm6]	A	G	1.389e^-4	0.867	SYNONYMOUS_CODING SrpRbeta DOWNSTREAM CG32022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3R	21731313	3R_21731313_SNP [dm3] 3R_25905591_SNP [dm6]	G	A	1.389e^-4	0.867	DOWNSTREAM CR43259 INTRON CR43259
3L	15640547	3L_15640547_SNP [dm3] 3L_15647447_SNP [dm6]	C	T	1.403e^-4	0.867	SYNONYMOUS_CODING comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15402606	2L_15402606_SNP [dm3] 2L_15402606_SNP [dm6]	A	C	1.405e^-4	0.867	INTERGENIC
3L	13769601	3L_13769601_SNP [dm3] 3L_13776501_SNP [dm6]	T	G	1.406e^-4	0.867	INTRON bru-3
3R	26960158	3R_26960158_SNP [dm3] 3R_31134436_SNP [dm6]	C	G	1.414e^-4	0.867	UTR_5_PRIME Gycbeta100B
3L	6664667	3L_6664667_SNP [dm3] 3L_6671567_SNP [dm6]	T	C	1.423e^-4	0.867	INTERGENIC
3R	9454611	3R_9454611_SNP [dm3] 3R_13628889_SNP [dm6]	A	G	1.423e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1163934	2L_1163934_SNP [dm3] 2L_1163934_SNP [dm6]	C	G	1.429e^-4	0.867	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9441901	3R_9441901_SNP [dm3] 3R_13616179_SNP [dm6]	T	A	1.430e^-4	0.867	NON_SYNONYMOUS_CODING CG9269
3L	10816767	3L_10816767_SNP [dm3] 3L_10823667_SNP [dm6]	A	T	1.442e^-4	0.867	INTERGENIC
3L	18850873	3L_18850873_SNP [dm3] 3L_18857773_SNP [dm6]	C	G	1.442e^-4	0.867	DOWNSTREAM CR45388 INTERGENIC
3L	16929539	3L_16929539_INS [dm3] 3L_16936439_INS [dm6]	A	AAA	1.442e^-4	0.867	UPSTREAM CG11905 INTERGENIC
3L	23952244	3L_23952244_DEL [dm3] 3L_23959144_DEL [dm6]	CG	C	1.445e^-4	0.867	INTRON CG40470
2L	1158386	2L_1158386_SNP [dm3] 2L_1158386_SNP [dm6]	G	A	1.447e^-4	0.867	UPSTREAM Tango14 & 1 other DOWNSTREAM CR43767 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16509097	3L_16509097_SNP [dm3] 3L_16515997_SNP [dm6]	G	C	1.448e^-4	0.867	INTRON CG43373
2L	9342764	2L_9342764_SNP [dm3] 2L_9342764_SNP [dm6]	T	C	1.454e^-4	0.867	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
X	5990185	X_5990185_SNP [dm3] X_6096152_SNP [dm6]	C	A	1.462e^-4	0.867	UTR_5_PRIME Nep1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	1916480	2L_1916480_SNP [dm3] 2L_1916480_SNP [dm6]	G	T	1.466e^-4	0.867	INTRON CG7337
2L	11364010	2L_11364010_SNP [dm3] 2L_11364010_SNP [dm6]	A	G	1.467e^-4	0.867	INTRON salr	TF binding site mE1_TFBS_HSA
3L	13233443	3L_13233443_SNP [dm3] 3L_13240343_SNP [dm6]	G	C	1.467e^-4	0.867	INTRON caps
2L	11378494	2L_11378494_SNP [dm3] 2L_11378494_SNP [dm6]	T	A	1.471e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	9449213	3R_9449213_SNP [dm3] 3R_13623491_SNP [dm6]	A	G	1.474e^-4	0.867	INTERGENIC
3L	23954695	3L_23954695_SNP [dm3] 3L_23961595_SNP [dm6]	A	C	1.476e^-4	0.867	INTRON CG40470
X	19077403	X_19077403_SNP [dm3] X_19183370_SNP [dm6]	T	G	1.484e^-4	0.867	UPSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9817703	2L_9817703_SNP [dm3] 2L_9817703_SNP [dm6]	G	T	1.485e^-4	0.867	INTRON nAChRalpha6
2R	18272586	2R_18272586_SNP [dm3] 2R_22385081_SNP [dm6]	T	A	1.485e^-4	0.867	INTRON CG13506
X	8556657	X_8556657_SNP [dm3] X_8662624_SNP [dm6]	C	T	1.495e^-4	0.867	INTERGENIC
3L	3261963	3L_3261963_SNP [dm3] 3L_3261963_SNP [dm6]	G	T	1.502e^-4	0.867	INTRON ckd
2L	1164106	2L_1164106_SNP [dm3] 2L_1164106_SNP [dm6]	G	A	1.513e^-4	0.867	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13122503	2L_13122503_SNP [dm3] 2L_13122503_SNP [dm6]	T	C	1.521e^-4	0.867	INTERGENIC
3R	9442264	3R_9442264_SNP [dm3] 3R_13616542_SNP [dm6]	G	C	1.523e^-4	0.867	DOWNSTREAM CG9269 INTERGENIC
2L	9344710	2L_9344710_SNP [dm3] 2L_9344710_SNP [dm6]	C	A	1.531e^-4	0.867	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	9342721	2L_9342721_SNP [dm3] 2L_9342721_SNP [dm6]	T	A	1.535e^-4	0.867	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3R	9443387	3R_9443387_SNP [dm3] 3R_13617665_SNP [dm6]	T	A	1.535e^-4	0.867	DOWNSTREAM CR45680 INTERGENIC
2L	13171123	2L_13171123_SNP [dm3] 2L_13171123_SNP [dm6]	T	A	1.540e^-4	0.867	INTRON Sfmbt
3L	5463785	3L_5463785_SNP [dm3] 3L_5470685_SNP [dm6]	A	C	1.545e^-4	0.867	INTERGENIC
X	19155772	X_19155772_SNP [dm3] X_19261739_SNP [dm6]	T	C	1.559e^-4	0.867	UPSTREAM Vav & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	6664671	3L_6664671_SNP [dm3] 3L_6671571_SNP [dm6]	C	T	1.563e^-4	0.867	INTERGENIC
2L	5566870	2L_5566870_SNP [dm3] 2L_5566870_SNP [dm6]	C	G	1.564e^-4	0.867	INTERGENIC
2L	17807435	2L_17807435_SNP [dm3] 2L_17807435_SNP [dm6]	C	A	1.567e^-4	0.867	INTRON CadN2
2L	7677282	2L_7677282_SNP [dm3] 2L_7677282_SNP [dm6]	A	G	1.569e^-4	0.867	INTRON Myo28B1
3R	10784069	3R_10784069_SNP [dm3] 3R_14958347_SNP [dm6]	A	T	1.570e^-4	0.867	INTERGENIC
2R	7069053	2R_7069053_SNP [dm3] 2R_11181548_SNP [dm6]	G	T	1.571e^-4	0.867	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16028485	2L_16028485_SNP [dm3] 2L_16028485_SNP [dm6]	C	T	1.575e^-4	0.867	INTRON beat-Ic
3R	16730224	3R_16730224_SNP [dm3] 3R_20904502_SNP [dm6]	G	A	1.576e^-4	0.867	DOWNSTREAM TotX INTRON CG5621
X	19155774	X_19155774_SNP [dm3] X_19261741_SNP [dm6]	A	G	1.585e^-4	0.867	UPSTREAM Vav & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	26487653	3R_26487653_SNP [dm3] 3R_30661931_SNP [dm6]	G	T	1.585e^-4	0.867	INTERGENIC
3L	11313782	3L_11313782_SNP [dm3] 3L_11320682_SNP [dm6]	T	A	1.586e^-4	0.867	UTR_3_PRIME CG6168
3L	11313784	3L_11313784_SNP [dm3] 3L_11320684_SNP [dm6]	A	T	1.586e^-4	0.867	UTR_3_PRIME CG6168
X	5760553	X_5760553_SNP [dm3] X_5866520_SNP [dm6]	T	A	1.589e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9128690	2L_9128690_SNP [dm3] 2L_9128690_SNP [dm6]	T	C	1.604e^-4	0.867	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10321631	3L_10321631_SNP [dm3] 3L_10328531_SNP [dm6]	A	T	1.622e^-4	0.867	INTERGENIC
3R	3483643	3R_3483643_SNP [dm3] 3R_7657921_SNP [dm6]	T	A	1.625e^-4	0.867	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_inv
2R	9368725	2R_9368725_SNP [dm3] 2R_13481220_SNP [dm6]	C	T	1.630e^-4	0.867	INTRON arr
2L	9116826	2L_9116826_SNP [dm3] 2L_9116826_SNP [dm6]	T	C	1.631e^-4	0.867	INTERGENIC
2L	10957266	2L_10957266_SNP [dm3] 2L_10957266_SNP [dm6]	C	A	1.632e^-4	0.867	INTRON dpr2
3R	22480394	3R_22480394_SNP [dm3] 3R_26654672_SNP [dm6]	C	G	1.633e^-4	0.867	INTRON beat-VII	TF binding site mE1_TFBS_bab1
2L	9418299	2L_9418299_SNP [dm3] 2L_9418299_SNP [dm6]	A	G	1.634e^-4	0.867	INTRON Mco1
3R	9373914	3R_9373914_SNP [dm3] 3R_13548192_SNP [dm6]	G	C	1.635e^-4	0.867	INTERGENIC
X	6894594	X_6894594_SNP [dm3] X_7000561_SNP [dm6]	C	T	1.635e^-4	0.867	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	26948531	3R_26948531_SNP [dm3] 3R_31122809_SNP [dm6]	G	A	1.644e^-4	0.867	SYNONYMOUS_CODING Prosalpha3T
2L	21071704	2L_21071704_SNP [dm3] 2L_21071704_SNP [dm6]	A	G	1.645e^-4	0.867	UPSTREAM CG9265 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13802182	3R_13802182_DEL [dm3] 3R_17976460_DEL [dm6]	TGAT	T	1.646e^-4	0.867	INTRON cpo
2L	12930551	2L_12930551_SNP [dm3] 2L_12930551_SNP [dm6]	A	T	1.652e^-4	0.867	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3L	5253575	3L_5253575_DEL [dm3] 3L_5260475_DEL [dm6]	CTCAC	C	1.657e^-4	0.867	INTRON shep
3R	10651100	3R_10651100_INS [dm3] 3R_14825378_INS [dm6]	G	GCTG	1.660e^-4	0.867	CODON_INSERTION btsz
2L	9319603	2L_9319603_SNP [dm3] 2L_9319603_SNP [dm6]	C	T	1.674e^-4	0.867	INTERGENIC
3L	16949950	3L_16949950_SNP [dm3] 3L_16956850_SNP [dm6]	A	T	1.678e^-4	0.867	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3L	13619842	3L_13619842_DEL [dm3] 3L_13626742_DEL [dm6]	CCACCAGCAGGACGGCTTGT...	A	1.682e^-4	0.867	INTRON bru-3
3L	14722503	3L_14722503_SNP [dm3] 3L_14729403_SNP [dm6]	T	G	1.684e^-4	0.867	DOWNSTREAM CG13473 INTRON ome
2R	1959634	2R_1959634_SNP [dm3] 2R_6072129_SNP [dm6]	C	T	1.688e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13598592	3L_13598592_SNP [dm3] 3L_13605492_SNP [dm6]	A	T	1.692e^-4	0.867	INTRON bru-3
2L	9344630	2L_9344630_SNP [dm3] 2L_9344630_SNP [dm6]	G	T	1.723e^-4	0.867	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2R	18905990	2R_18905990_INS [dm3] 2R_23018467_INS [dm6]	A	ACCCACA	1.724e^-4	0.867	INTRON twi & 1 other
3L	6992108	3L_6992108_SNP [dm3] 3L_6999008_SNP [dm6]	G	A	1.730e^-4	0.867	INTRON Mp
3L	8645064	3L_8645064_SNP [dm3] 3L_8651964_SNP [dm6]	C	T	1.733e^-4	0.867	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	13704843	3R_13704843_DEL [dm3] 3R_17879121_DEL [dm6]	AGAGTTATATGGTCGAAA...	A	1.742e^-4	0.867	INTRON Rim	TF binding site mE1_TFBS_inv
2L	13040967	2L_13040967_SNP [dm3] 2L_13040967_SNP [dm6]	G	T	1.756e^-4	0.867	INTRON CG9932
2L	9651776	2L_9651776_SNP [dm3] 2L_9651776_SNP [dm6]	A	G	1.764e^-4	0.867	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_sens
3L	13769660	3L_13769660_SNP [dm3] 3L_13776560_SNP [dm6]	T	G	1.772e^-4	0.867	INTRON bru-3
2R	17852112	2R_17852112_SNP [dm3] 2R_21964607_SNP [dm6]	T	C	1.781e^-4	0.867	SYNONYMOUS_CODING ppk9	TF binding site mE1_TFBS_chinmo
3L	13624689	3L_13624689_SNP [dm3] 3L_13631589_SNP [dm6]	A	C	1.786e^-4	0.867	INTRON bru-3
2L	6750024	2L_6750024_INS [dm3] 2L_6750024_INS [dm6]	A	AAA	1.790e^-4	0.867	INTRON CG11221
3R	21731470	3R_21731470_SNP [dm3] 3R_25905748_SNP [dm6]	C	A	1.792e^-4	0.867	INTRON CR43259 EXON CR43259
3L	5342049	3L_5342049_SNP [dm3] 3L_5348949_SNP [dm6]	T	A	1.794e^-4	0.867	INTRON lama
3L	16997407	3L_16997407_SNP [dm3] 3L_17004307_SNP [dm6]	G	A	1.800e^-4	0.867	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11378471	2L_11378471_INS [dm3] 2L_11378471_INS [dm6]	A	AGTTCAATATAA...	1.808e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12022222	2R_12022222_SNP [dm3] 2R_16134717_SNP [dm6]	C	T	1.810e^-4	0.867	INTRON spin
2R	14567765	2R_14567765_SNP [dm3] 2R_18680260_SNP [dm6]	C	T	1.811e^-4	0.867	SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	24241337	3L_24241337_SNP [dm3] 3L_24248237_SNP [dm6]	G	A	1.816e^-4	0.867	INTRON Snap25
2L	17807183	2L_17807183_SNP [dm3] 2L_17807183_SNP [dm6]	T	C	1.820e^-4	0.867	INTRON CadN2
2L	7250148	2L_7250148_SNP [dm3] 2L_7250148_SNP [dm6]	T	C	1.821e^-4	0.867	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25360474	3R_25360474_SNP [dm3] 3R_29534752_SNP [dm6]	A	C	1.825e^-4	0.867	INTRON CR43613	TF binding site mE1_TFBS_chinmo
3L	14722504	3L_14722504_DEL [dm3] 3L_14729404_DEL [dm6]	ACTTTTATATTAGGC...	A	1.825e^-4	0.867	DOWNSTREAM CG13473 INTRON ome
3L	16484329	3L_16484329_SNP [dm3] 3L_16491229_SNP [dm6]	C	A	1.828e^-4	0.867	DOWNSTREAM CG42514 & 1 other INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	14984408	2L_14984408_SNP [dm3] 2L_14984408_SNP [dm6]	A	G	1.834e^-4	0.867	INTRON mol
2L	12930559	2L_12930559_SNP [dm3] 2L_12930559_SNP [dm6]	C	T	1.844e^-4	0.867	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3R	15699118	3R_15699118_DEL [dm3] 3R_19873396_DEL [dm6]	TAT	T	1.849e^-4	0.867	INTRON CG4562
3L	4611475	3L_4611475_SNP [dm3] 3L_4611475_SNP [dm6]	A	G	1.851e^-4	0.867	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3R	26455869	3R_26455869_SNP [dm3] 3R_30630147_SNP [dm6]	T	A	1.851e^-4	0.867	INTERGENIC
3R	9447078	3R_9447078_SNP [dm3] 3R_13621356_SNP [dm6]	G	A	1.878e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8009752	2R_8009752_SNP [dm3] 2R_12122247_SNP [dm6]	T	A	1.880e^-4	0.867	INTERGENIC
X	21283409	X_21283409_SNP [dm3] X_21412382_SNP [dm6]	G	A	1.881e^-4	0.867	INTERGENIC
3R	9453821	3R_9453821_SNP [dm3] 3R_13628099_SNP [dm6]	G	T	1.883e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	23695821	3L_23695821_DEL [dm3] 3L_23702721_DEL [dm6]	GGA	G	1.883e^-4	0.867	INTERGENIC	transposable element FlyBase
2L	11384068	2L_11384068_SNP [dm3] 2L_11384068_SNP [dm6]	G	A	1.886e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
3L	11624815	3L_11624815_SNP [dm3] 3L_11631715_SNP [dm6]	G	T	1.887e^-4	0.867	DOWNSTREAM CG18815 & 1 other INTRON CG32091
2R	19974896	2R_19974896_DEL [dm3] 2R_24087373_DEL [dm6]	AGGATTGCAGCGCATTGT...	A	1.888e^-4	0.867	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3191300	X_3191300_SNP [dm3] X_3297267_SNP [dm6]	T	A	1.893e^-4	0.867	INTRON dnc
2R	2044419	2R_2044419_SNP [dm3] 2R_6156914_SNP [dm6]	C	A	1.900e^-4	0.867	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13599922	3L_13599922_INS [dm3] 3L_13606822_INS [dm6]	G	GAATG	1.909e^-4	0.867	INTRON bru-3
2L	10720712	2L_10720712_SNP [dm3] 2L_10720712_SNP [dm6]	A	C	1.911e^-4	0.867	INTERGENIC
3L	6646046	3L_6646046_SNP [dm3] 3L_6652946_SNP [dm6]	G	A	1.915e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9150868	2R_9150868_SNP [dm3] 2R_13263363_SNP [dm6]	T	A	1.916e^-4	0.867	INTRON CG42319
2R	9150879	2R_9150879_SNP [dm3] 2R_13263374_SNP [dm6]	T	A	1.916e^-4	0.867	INTRON CG42319
2R	9150924	2R_9150924_SNP [dm3] 2R_13263419_SNP [dm6]	T	C	1.916e^-4	0.867	INTRON CG42319
3R	9451678	3R_9451678_SNP [dm3] 3R_13625956_SNP [dm6]	A	G	1.918e^-4	0.867	INTERGENIC
3R	9373910	3R_9373910_SNP [dm3] 3R_13548188_SNP [dm6]	C	T	1.925e^-4	0.867	INTERGENIC
3L	16483746	3L_16483746_DEL [dm3] 3L_16490646_DEL [dm6]	TGT	T	1.932e^-4	0.867	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	9449196	3R_9449196_SNP [dm3] 3R_13623474_SNP [dm6]	A	G	1.941e^-4	0.867	INTERGENIC
2R	8786334	2R_8786334_SNP [dm3] 2R_12898829_SNP [dm6]	C	A	1.942e^-4	0.867	UTR_3_PRIME vg
3L	8672931	3L_8672931_SNP [dm3] 3L_8679831_SNP [dm6]	G	T	1.964e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	13365964	X_13365964_SNP [dm3] X_13471931_SNP [dm6]	T	C	1.965e^-4	0.867	INTRON Neto
3R	1585638	3R_1585638_SNP [dm3] 3R_5759916_SNP [dm6]	G	C	1.966e^-4	0.867	UTR_3_PRIME CG2082 UPSTREAM Sec8 INTRON CG2082
3L	13767842	3L_13767842_SNP [dm3] 3L_13774742_SNP [dm6]	T	A	1.966e^-4	0.867	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12830661	2R_12830661_SNP [dm3] 2R_16943156_SNP [dm6]	A	C	1.967e^-4	0.867	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E	TF binding site mE1_TFBS_inv
2L	14657324	2L_14657324_SNP [dm3] 2L_14657324_SNP [dm6]	T	C	1.979e^-4	0.867	INTRON osp	TF binding site mE1_TFBS_inv
2L	9117496	2L_9117496_SNP [dm3] 2L_9117496_SNP [dm6]	G	A	1.982e^-4	0.867	INTERGENIC
3R	13351169	3R_13351169_SNP [dm3] 3R_17525447_SNP [dm6]	A	C	1.992e^-4	0.867	INTERGENIC
2R	18895125	2R_18895125_SNP [dm3] 2R_23007602_SNP [dm6]	C	G	1.994e^-4	0.867	INTRON twi	TF binding site BDTNP1_TFBS_twi
3R	21580788	3R_21580788_SNP [dm3] 3R_25755066_SNP [dm6]	C	T	1.998e^-4	0.867	INTRON LpR1
2R	9150639	2R_9150639_DEL [dm3] 2R_13263134_DEL [dm6]	GTG	G	2.000e^-4	0.867	INTRON CG42319
2L	7677489	2L_7677489_SNP [dm3] 2L_7677489_SNP [dm6]	A	G	2.004e^-4	0.867	INTRON Myo28B1
2L	11379988	2L_11379988_SNP [dm3] 2L_11379988_SNP [dm6]	T	C	2.009e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
2L	8328810	2L_8328810_SNP [dm3] 2L_8328810_SNP [dm6]	C	T	2.011e^-4	0.867	UPSTREAM CG14275 INTRON CG14275	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5263275	3R_5263275_SNP [dm3] 3R_9437553_SNP [dm6]	A	T	2.013e^-4	0.867	INTRON ps	TF binding site mE1_TFBS_Trl
2R	9150925	2R_9150925_SNP [dm3] 2R_13263420_SNP [dm6]	C	T	2.014e^-4	0.867	INTRON CG42319
2L	9344621	2L_9344621_SNP [dm3] 2L_9344621_SNP [dm6]	G	A	2.015e^-4	0.867	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3L	11313821	3L_11313821_SNP [dm3] 3L_11320721_SNP [dm6]	T	C	2.015e^-4	0.867	SYNONYMOUS_CODING CG6168
3R	10722876	3R_10722876_SNP [dm3] 3R_14897154_SNP [dm6]	G	C	2.016e^-4	0.867	SYNONYMOUS_CODING Nup93-2 DOWNSTREAM CG14860	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7722572	2L_7722572_SNP [dm3] 2L_7722572_SNP [dm6]	T	C	2.016e^-4	0.867	NON_SYNONYMOUS_CODING CG13794 DOWNSTREAM CG13795
3R	10683433	3R_10683433_SNP [dm3] 3R_14857711_SNP [dm6]	G	A	2.017e^-4	0.867	INTRON btsz
X	18847424	X_18847424_SNP [dm3] X_18953391_SNP [dm6]	A	T	2.018e^-4	0.867	INTRON CG43759
2L	1193619	2L_1193619_SNP [dm3] 2L_1193619_SNP [dm6]	G	A	2.023e^-4	0.867	INTRON CG5001
3R	17704840	3R_17704840_SNP [dm3] 3R_21879118_SNP [dm6]	C	A	2.025e^-4	0.867	NON_SYNONYMOUS_CODING P5CDh2 UPSTREAM CG34148 EXON CR45046	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	23977541	3L_23977541_SNP [dm3] 3L_23984441_SNP [dm6]	G	A	2.027e^-4	0.867	INTRON CG40470
2L	13040972	2L_13040972_SNP [dm3] 2L_13040972_SNP [dm6]	A	G	2.034e^-4	0.867	INTRON CG9932
2L	12930519	2L_12930519_DEL [dm3] 2L_12930519_DEL [dm6]	TTCACGTGTTTTCAAATGCA...	T	2.039e^-4	0.867	DOWNSTREAM ACXE INTERGENIC
3L	23532163	3L_23532163_SNP [dm3] 3L_23539063_SNP [dm6]	A	C	2.041e^-4	0.867	INTERGENIC
3L	22178204	3L_22178204_SNP [dm3] 3L_22185104_SNP [dm6]	C	A	2.045e^-4	0.867	INTRON olf413	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	23169383	3L_23169383_DEL [dm3] 3L_23176283_DEL [dm6]	TT	T	2.048e^-4	0.867	INTRON CG34031
X	14405453	X_14405453_SNP [dm3] X_14511420_SNP [dm6]	A	G	2.051e^-4	0.867	INTERGENIC
2R	12829410	2R_12829410_SNP [dm3] 2R_16941905_SNP [dm6]	G	A	2.057e^-4	0.867	INTRON Pkc53E
3L	4611536	3L_4611536_SNP [dm3] 3L_4611536_SNP [dm6]	C	T	2.061e^-4	0.867	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
2L	13040970	2L_13040970_SNP [dm3] 2L_13040970_SNP [dm6]	T	A	2.062e^-4	0.867	INTRON CG9932
2R	1682025	2R_1682025_SNP [dm3] 2R_5794520_SNP [dm6]	C	A	2.064e^-4	0.867	UPSTREAM Tsp42A INTERGENIC	transposable element FlyBase
3R	16195611	3R_16195611_SNP [dm3] 3R_20369889_SNP [dm6]	A	G	2.065e^-4	0.867	INTERGENIC
3R	10771455	3R_10771455_SNP [dm3] 3R_14945733_SNP [dm6]	A	G	2.071e^-4	0.867	INTERGENIC
2R	9150813	2R_9150813_DEL [dm3] 2R_13263308_DEL [dm6]	AATAAAGA	A	2.071e^-4	0.867	INTRON CG42319
2L	7713209	2L_7713209_SNP [dm3] 2L_7713209_SNP [dm6]	A	C	2.072e^-4	0.867	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
3L	18848806	3L_18848806_SNP [dm3] 3L_18855706_SNP [dm6]	G	T	2.096e^-4	0.867	INTERGENIC
2L	561561	2L_561561_SNP [dm3] 2L_561561_SNP [dm6]	G	T	2.108e^-4	0.867	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
3L	14423353	3L_14423353_SNP [dm3] 3L_14430253_SNP [dm6]	A	G	2.110e^-4	0.867	INTRON bbg
2L	1160567	2L_1160567_SNP [dm3] 2L_1160567_SNP [dm6]	G	A	2.114e^-4	0.867	SYNONYMOUS_CODING CG5080 DOWNSTREAM Tango14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	584200	2L_584200_SNP [dm3] 2L_584200_SNP [dm6]	T	G	2.119e^-4	0.867	SYNONYMOUS_CODING Gsc
X	22147886	X_22147886_SNP [dm3] X_22746050_SNP [dm6]	G	A	2.128e^-4	0.867	INTRON CR44997
2L	549481	2L_549481_SNP [dm3] 2L_549481_SNP [dm6]	A	G	2.135e^-4	0.867	UTR_5_PRIME Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13648000	3L_13648000_SNP [dm3] 3L_13654900_SNP [dm6]	A	C	2.141e^-4	0.867	INTRON bru-3
2L	3847813	2L_3847813_SNP [dm3] 2L_3847813_SNP [dm6]	C	T	2.149e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3482841	3R_3482841_SNP [dm3] 3R_7657119_SNP [dm6]	T	G	2.154e^-4	0.867	INTERGENIC
3R	10680876	3R_10680876_SNP [dm3] 3R_14855154_SNP [dm6]	C	G	2.158e^-4	0.867	INTRON btsz
3L	16997387	3L_16997387_INS [dm3] 3L_17004287_INS [dm6]	G	GTTTTACAAATATAATTGTC...	2.159e^-4	0.867	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9312043	2L_9312043_INS [dm3] 2L_9312043_INS [dm6]	T	TT	2.174e^-4	0.867	INTERGENIC
2L	9630222	2L_9630222_SNP [dm3] 2L_9630222_SNP [dm6]	T	A	2.177e^-4	0.867	INTERGENIC
X	22263752	X_22263752_DEL [dm3] X_22861916_DEL [dm6]	TGTGGCATTCAGCTCAT...	T	2.183e^-4	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	1999403	2R_1999403_SNP [dm3] 2R_6111898_SNP [dm6]	A	G	2.189e^-4	0.867	INTRON EcR
3L	8678720	3L_8678720_DEL [dm3] 3L_8685620_DEL [dm6]	TAT	T	2.192e^-4	0.867	INTERGENIC
3R	9449186	3R_9449186_SNP [dm3] 3R_13623464_SNP [dm6]	G	A	2.196e^-4	0.867	INTERGENIC
3L	4611471	3L_4611471_SNP [dm3] 3L_4611471_SNP [dm6]	T	C	2.202e^-4	0.867	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
2L	10834778	2L_10834778_SNP [dm3] 2L_10834778_SNP [dm6]	A	G	2.205e^-4	0.867	INTRON Nos
3R	15045512	3R_15045512_SNP [dm3] 3R_19219790_SNP [dm6]	T	C	2.211e^-4	0.867	INTRON vib
3L	18840243	3L_18840243_SNP [dm3] 3L_18847143_SNP [dm6]	G	C	2.212e^-4	0.867	UPSTREAM Indy INTERGENIC
3R	10218377	3R_10218377_INS [dm3] 3R_14392655_INS [dm6]	G	GACTTCAACT	2.213e^-4	0.867	UTR_3_PRIME cv-c
3R	13686505	3R_13686505_SNP [dm3] 3R_17860783_SNP [dm6]	T	A	2.215e^-4	0.867	INTRON tinc
3R	9452404	3R_9452404_SNP [dm3] 3R_13626682_SNP [dm6]	G	A	2.217e^-4	0.867	INTERGENIC
2L	17764354	2L_17764354_SNP [dm3] 2L_17764354_SNP [dm6]	G	T	2.218e^-4	0.867	INTRON CadN	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	1916034	2L_1916034_SNP [dm3] 2L_1916034_SNP [dm6]	A	T	2.219e^-4	0.867	INTRON CG7337
2R	9150805	2R_9150805_SNP [dm3] 2R_13263300_SNP [dm6]	G	A	2.226e^-4	0.867	INTRON CG42319
2L	14393216	2L_14393216_SNP [dm3] 2L_14393216_SNP [dm6]	A	G	2.227e^-4	0.867	INTRON elB	TF binding site mE1_TFBS_inv
3R	10424712	3R_10424712_SNP [dm3] 3R_14598990_SNP [dm6]	C	T	2.229e^-4	0.867	INTRON stumps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12930627	2L_12930627_SNP [dm3] 2L_12930627_SNP [dm6]	C	T	2.231e^-4	0.867	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3R	9456453	3R_9456453_SNP [dm3] 3R_13630731_SNP [dm6]	T	C	2.237e^-4	0.867	DOWNSTREAM CR45594 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	9451679	3R_9451679_SNP [dm3] 3R_13625957_SNP [dm6]	T	C	2.247e^-4	0.867	INTERGENIC
3L	16997394	3L_16997394_SNP [dm3] 3L_17004294_SNP [dm6]	C	A	2.247e^-4	0.867	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18001679	3R_18001679_SNP [dm3] 3R_22175957_SNP [dm6]	T	G	2.253e^-4	0.867	INTRON SKIP
3R	3063044	3R_3063044_SNP [dm3] 3R_7237322_SNP [dm6]	A	C	2.255e^-4	0.867	SPLICE_SITE_REGION CG14608 INTRON CG14608
3L	11120559	3L_11120559_SNP [dm3] 3L_11127459_SNP [dm6]	A	G	2.276e^-4	0.867	INTRON CG42575
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	2.277e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4348287	3L_4348287_SNP [dm3] 3L_4348287_SNP [dm6]	T	G	2.283e^-4	0.867	DOWNSTREAM CR45156 INTRON Cip4
3R	13350864	3R_13350864_INS [dm3] 3R_17525142_INS [dm6]	G	GCTGGA	2.283e^-4	0.867	INTERGENIC
3R	13350865	3R_13350865_DEL [dm3] 3R_17525143_DEL [dm6]	TGTTAATAA	T	2.283e^-4	0.867	INTERGENIC
2L	10857626	2L_10857626_SNP [dm3] 2L_10857626_SNP [dm6]	T	C	2.288e^-4	0.867	SYNONYMOUS_CODING ial UPSTREAM Dnz1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20138532	3L_20138532_SNP [dm3] 3L_20145432_SNP [dm6]	A	C	2.293e^-4	0.867	INTERGENIC
3L	8909826	3L_8909826_SNP [dm3] 3L_8916726_SNP [dm6]	T	C	2.294e^-4	0.867	INTRON Tsp66E
3L	14722488	3L_14722488_SNP [dm3] 3L_14729388_SNP [dm6]	A	G	2.297e^-4	0.867	DOWNSTREAM CG13473 INTRON ome
2R	14820555	2R_14820555_SNP [dm3] 2R_18933050_SNP [dm6]	T	C	2.298e^-4	0.867	INTRON sano
3R	13355211	3R_13355211_SNP [dm3] 3R_17529489_SNP [dm6]	T	C	2.304e^-4	0.867	INTERGENIC
3L	601026	3L_601026_SNP [dm3] 3L_601026_SNP [dm6]	T	G	2.313e^-4	0.867	INTRON CG13893	TF binding site mE1_TFBS_inv
X	11409493	X_11409493_SNP [dm3] X_11515460_SNP [dm6]	A	T	2.322e^-4	0.867	INTRON Drak	TF binding site mE1_TFBS_Kr
X	2378397	X_2378397_SNP [dm3] X_2484364_SNP [dm6]	C	A	2.324e^-4	0.867	SYNONYMOUS_CODING trol
2R	12169347	2R_12169347_SNP [dm3] 2R_16281842_SNP [dm6]	C	T	2.335e^-4	0.867	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18272587	2R_18272587_SNP [dm3] 2R_22385082_SNP [dm6]	T	A	2.339e^-4	0.867	INTRON CG13506
3L	23695256	3L_23695256_SNP [dm3] 3L_23702156_SNP [dm6]	C	T	2.340e^-4	0.867	INTERGENIC	transposable element FlyBase
3R	13351170	3R_13351170_SNP [dm3] 3R_17525448_SNP [dm6]	C	A	2.341e^-4	0.867	INTERGENIC
2L	3645070	2L_3645070_SNP [dm3] 2L_3645070_SNP [dm6]	G	A	2.355e^-4	0.867	INTRON for
2L	7677654	2L_7677654_SNP [dm3] 2L_7677654_SNP [dm6]	G	A	2.357e^-4	0.867	INTRON Myo28B1
3L	15760351	3L_15760351_SNP [dm3] 3L_15767251_SNP [dm6]	G	A	2.358e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	9586379	2L_9586379_SNP [dm3] 2L_9586379_SNP [dm6]	A	T	2.374e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19277021	2R_19277021_SNP [dm3] 2R_23389498_SNP [dm6]	C	T	2.385e^-4	0.867	UTR_3_PRIME CG3530 DOWNSTREAM eIF2B-delta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23621184	3R_23621184_SNP [dm3] 3R_27795462_SNP [dm6]	A	T	2.385e^-4	0.867	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	3694156	2L_3694156_SNP [dm3] 2L_3694156_SNP [dm6]	A	G	2.389e^-4	0.867	UPSTREAM CG3513 & 1 other DOWNSTREAM CG43165 & 1 other EXON CR43364
3R	12334185	3R_12334185_SNP [dm3] 3R_16508463_SNP [dm6]	C	T	2.393e^-4	0.867	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	10945926	2L_10945926_SNP [dm3] 2L_10945926_SNP [dm6]	G	A	2.399e^-4	0.867	INTRON dpr2
2R	18905923	2R_18905923_SNP [dm3] 2R_23018400_SNP [dm6]	T	A	2.402e^-4	0.867	INTRON twi & 1 other
3R	19942107	3R_19942107_SNP [dm3] 3R_24116385_SNP [dm6]	T	C	2.420e^-4	0.867	UPSTREAM CG13607 INTRON Rootletin
3L	17231057	3L_17231057_INS [dm3] 3L_17237957_INS [dm6]	G	GCG	2.423e^-4	0.867	UTR_5_PRIME Rbp6 DOWNSTREAM CG6512	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12636932	X_12636932_SNP [dm3] X_12742899_SNP [dm6]	C	A	2.423e^-4	0.867	UPSTREAM Smr EXON CR45623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16289150	3R_16289150_SNP [dm3] 3R_20463428_SNP [dm6]	C	G	2.424e^-4	0.867	INTRON Gfrl
3R	22412720	3R_22412720_SNP [dm3] 3R_26586998_SNP [dm6]	T	A	2.437e^-4	0.867	UTR_3_PRIME scrib INTRON scrib
3R	9455410	3R_9455410_SNP [dm3] 3R_13629688_SNP [dm6]	C	T	2.441e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23691225	3L_23691225_INS [dm3] 3L_23698125_INS [dm6]	T	TTT	2.446e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	11113507	3L_11113507_SNP [dm3] 3L_11120407_SNP [dm6]	C	T	2.450e^-4	0.867	START_GAINED fd68A UTR_5_PRIME fd68A UPSTREAM fd68A & 1 other INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27155389	3R_27155389_SNP [dm3] 3R_31329667_SNP [dm6]	A	G	2.455e^-4	0.867	INTRON CG34347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13046624	2L_13046624_SNP [dm3] 2L_13046624_SNP [dm6]	C	G	2.457e^-4	0.867	INTRON CG9932
3R	13347172	3R_13347172_SNP [dm3] 3R_17521450_SNP [dm6]	C	A	2.463e^-4	0.867	INTERGENIC
2R	15116536	2R_15116536_SNP [dm3] 2R_19229031_SNP [dm6]	C	A	2.465e^-4	0.867	UPSTREAM cora DOWNSTREAM CG7137 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9374065	3R_9374065_SNP [dm3] 3R_13548343_SNP [dm6]	T	G	2.474e^-4	0.867	INTERGENIC
3R	6649193	3R_6649193_SNP [dm3] 3R_10823471_SNP [dm6]	G	A	2.478e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9318300	2L_9318300_SNP [dm3] 2L_9318300_SNP [dm6]	G	C	2.479e^-4	0.867	INTERGENIC
2L	3182045	2L_3182045_SNP [dm3] 2L_3182045_SNP [dm6]	C	A	2.487e^-4	0.867	INTRON CG34393
3R	13347202	3R_13347202_SNP [dm3] 3R_17521480_SNP [dm6]	C	G	2.488e^-4	0.867	INTERGENIC
3R	7499819	3R_7499819_SNP [dm3] 3R_11674097_SNP [dm6]	C	T	2.490e^-4	0.867	UPSTREAM CG14715 DOWNSTREAM CG18476 & 1 other INTERGENIC
3L	24082279	3L_24082279_SNP [dm3] 3L_24089179_SNP [dm6]	T	A	2.492e^-4	0.867	INTRON Snap25
3L	23955356	3L_23955356_SNP [dm3] 3L_23962256_SNP [dm6]	T	A	2.497e^-4	0.867	INTRON CG40470
3R	13346202	3R_13346202_SNP [dm3] 3R_17520480_SNP [dm6]	C	T	2.498e^-4	0.867	INTERGENIC
3L	4611531	3L_4611531_SNP [dm3] 3L_4611531_SNP [dm6]	A	G	2.527e^-4	0.867	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3R	12325857	3R_12325857_DEL [dm3] 3R_16500135_DEL [dm6]	AT	A	2.532e^-4	0.867	INTRON decay
3R	13347220	3R_13347220_SNP [dm3] 3R_17521498_SNP [dm6]	T	A	2.534e^-4	0.867	INTERGENIC
3L	22307180	3L_22307180_SNP [dm3] 3L_22314080_SNP [dm6]	A	G	2.546e^-4	0.867	INTRON Ten-m
2L	8416093	2L_8416093_SNP [dm3] 2L_8416093_SNP [dm6]	C	T	2.546e^-4	0.867	UPSTREAM CG13398 INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	16134819	3R_16134819_SNP [dm3] 3R_20309097_SNP [dm6]	C	T	2.564e^-4	0.867	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9343320	2L_9343320_SNP [dm3] 2L_9343320_SNP [dm6]	C	T	2.567e^-4	0.867	NON_SYNONYMOUS_CODING CG3748
3L	7273257	3L_7273257_SNP [dm3] 3L_7280157_SNP [dm6]	A	G	2.577e^-4	0.867	INTRON unc-13-4A
2R	14616504	2R_14616504_SNP [dm3] 2R_18728999_SNP [dm6]	A	G	2.579e^-4	0.867	SYNONYMOUS_CODING List INTRON Hs3st-A
2L	1005866	2L_1005866_SNP [dm3] 2L_1005866_SNP [dm6]	A	T	2.579e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_bab1
X	22235141	X_22235141_SNP [dm3] X_22833305_SNP [dm6]	A	G	2.582e^-4	0.867	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
3R	10578135	3R_10578135_SNP [dm3] 3R_14752413_SNP [dm6]	G	T	2.583e^-4	0.867	SYNONYMOUS_CODING CG7362 INTRON jvl
3R	17544820	3R_17544820_SNP [dm3] 3R_21719098_SNP [dm6]	G	A	2.586e^-4	0.867	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	16436168	3L_16436168_SNP [dm3] 3L_16443068_SNP [dm6]	C	T	2.589e^-4	0.867	INTRON CG33158 & 1 other
3R	17806913	3R_17806913_SNP [dm3] 3R_21981191_SNP [dm6]	T	C	2.590e^-4	0.867	INTRON Eip93F
2R	18272597	2R_18272597_SNP [dm3] 2R_22385092_SNP [dm6]	A	C	2.590e^-4	0.867	INTRON CG13506
3R	18683536	3R_18683536_SNP [dm3] 3R_22857814_SNP [dm6]	C	G	2.596e^-4	0.867	INTERGENIC
X	22268098	X_22268098_SNP [dm3] X_22866262_SNP [dm6]	A	G	2.610e^-4	0.867	NON_SYNONYMOUS_CODING CG42346
3R	24992480	3R_24992480_SNP [dm3] 3R_29166758_SNP [dm6]	C	T	2.613e^-4	0.867	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
2R	17852111	2R_17852111_SNP [dm3] 2R_21964606_SNP [dm6]	T	C	2.620e^-4	0.867	NON_SYNONYMOUS_CODING ppk9	TF binding site mE1_TFBS_chinmo
2R	14361106	2R_14361106_SNP [dm3] 2R_18473601_SNP [dm6]	C	A	2.622e^-4	0.867	INTRON CG30116
2L	11383389	2L_11383389_SNP [dm3] 2L_11383389_SNP [dm6]	G	T	2.623e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
3L	23970378	3L_23970378_SNP [dm3] 3L_23977278_SNP [dm6]	T	A	2.628e^-4	0.867	INTRON CG40470
3L	3145301	3L_3145301_SNP [dm3] 3L_3145301_SNP [dm6]	C	T	2.631e^-4	0.867	DOWNSTREAM CG12082 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1071187	3L_1071187_SNP [dm3] 3L_1071187_SNP [dm6]	A	G	2.638e^-4	0.867	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3R	3469071	3R_3469071_SNP [dm3] 3R_7643349_SNP [dm6]	T	A	2.644e^-4	0.867	INTERGENIC	transposable element FlyBase
3L	23428635	3L_23428635_SNP [dm3] 3L_23435535_SNP [dm6]	T	A	2.652e^-4	0.867	INTERGENIC
2R	12829007	2R_12829007_SNP [dm3] 2R_16941502_SNP [dm6]	A	T	2.654e^-4	0.867	INTRON Pkc53E
2L	5428985	2L_5428985_DEL [dm3] 2L_5428985_DEL [dm6]	TAGTCATCTT	T	2.656e^-4	0.867	INTERGENIC
2L	801302	2L_801302_SNP [dm3] 2L_801302_SNP [dm6]	A	C	2.659e^-4	0.867	DOWNSTREAM CR45259 INTERGENIC
3R	4446436	3R_4446436_SNP [dm3] 3R_8620714_SNP [dm6]	G	A	2.676e^-4	0.867	INTRON 5-HT2B
X	8291053	X_8291053_DEL [dm3] X_8397020_DEL [dm6]	TTGTATGTATGT...	T	2.692e^-4	0.867	DOWNSTREAM CG15345 INTERGENIC
3L	10997446	3L_10997446_SNP [dm3] 3L_11004346_SNP [dm6]	A	G	2.693e^-4	0.867	INTRON klu
2L	7755896	2L_7755896_SNP [dm3] 2L_7755896_SNP [dm6]	A	C	2.697e^-4	0.867	UPSTREAM CG14538 INTRON CG7196
X	8310779	X_8310779_SNP [dm3] X_8416746_SNP [dm6]	A	G	2.698e^-4	0.867	INTRON Trf2	TF binding site BDTNP1_TFBS_dl
2L	2611303	2L_2611303_INS [dm3] 2L_2611303_INS [dm6]	T	TT	2.700e^-4	0.867	DOWNSTREAM CG15395 INTERGENIC
3L	22331507	3L_22331507_SNP [dm3] 3L_22338407_SNP [dm6]	T	A	2.704e^-4	0.867	INTRON Ten-m
3L	18492648	3L_18492648_SNP [dm3] 3L_18499548_SNP [dm6]	G	C	2.712e^-4	0.867	INTRON AstC-R2
3L	16504646	3L_16504646_SNP [dm3] 3L_16511546_SNP [dm6]	T	C	2.718e^-4	0.867	INTRON CG43373
3R	13421634	3R_13421634_SNP [dm3] 3R_17595912_SNP [dm6]	A	C	2.724e^-4	0.867	SPLICE_SITE_REGION Sgs5 UPSTREAM CG7606 DOWNSTREAM CG7587 INTRON Sgs5
3R	17952835	3R_17952835_SNP [dm3] 3R_22127113_SNP [dm6]	C	A	2.725e^-4	0.867	INTRON CG42390
3L	2810142	3L_2810142_SNP [dm3] 3L_2810142_SNP [dm6]	G	A	2.727e^-4	0.867	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9586187	2L_9586187_SNP [dm3] 2L_9586187_SNP [dm6]	A	T	2.729e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	16294444	3R_16294444_SNP [dm3] 3R_20468722_SNP [dm6]	A	T	2.729e^-4	0.867	INTRON Gfrl
X	17175415	X_17175415_INS [dm3] X_17281382_INS [dm6]	T	TACCAGCG	2.731e^-4	0.867	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16294388	3R_16294388_SNP [dm3] 3R_20468666_SNP [dm6]	T	C	2.733e^-4	0.867	INTRON Gfrl
3R	13390205	3R_13390205_SNP [dm3] 3R_17564483_SNP [dm6]	A	G	2.734e^-4	0.867	INTRON Hmx
3R	13346903	3R_13346903_SNP [dm3] 3R_17521181_SNP [dm6]	G	A	2.738e^-4	0.867	INTERGENIC
3L	3261873	3L_3261873_SNP [dm3] 3L_3261873_SNP [dm6]	A	T	2.744e^-4	0.867	INTRON ckd
2L	3607301	2L_3607301_SNP [dm3] 2L_3607301_SNP [dm6]	T	A	2.746e^-4	0.867	UPSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	5978807	3R_5978807_SNP [dm3] 3R_10153085_SNP [dm6]	G	C	2.750e^-4	0.867	INTRON Invadolysin
3R	12742559	3R_12742559_INS [dm3] 3R_16916837_INS [dm6]	T	TTT	2.752e^-4	0.867	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	18895203	2R_18895203_SNP [dm3] 2R_23007680_SNP [dm6]	T	G	2.754e^-4	0.867	INTRON twi	TF binding site BDTNP1_TFBS_twi
3R	13421654	3R_13421654_SNP [dm3] 3R_17595932_SNP [dm6]	T	A	2.757e^-4	0.867	UPSTREAM CG7606 DOWNSTREAM CG7587 INTRON Sgs5
3R	3471395	3R_3471395_SNP [dm3] 3R_7645673_SNP [dm6]	T	A	2.763e^-4	0.867	INTERGENIC
X	3191308	X_3191308_SNP [dm3] X_3297275_SNP [dm6]	C	A	2.764e^-4	0.867	INTRON dnc
3R	10655818	3R_10655818_SNP [dm3] 3R_14830096_SNP [dm6]	G	T	2.770e^-4	0.867	INTRON btsz	TF binding site mE1_TFBS_chinmo
X	18741059	X_18741059_SNP [dm3] X_18847026_SNP [dm6]	C	T	2.775e^-4	0.867	SYNONYMOUS_CODING CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13873843	2L_13873843_SNP [dm3] 2L_13873843_SNP [dm6]	G	T	2.778e^-4	0.867	INTRON CenG1A
3L	18029418	3L_18029418_SNP [dm3] 3L_18036318_SNP [dm6]	G	A	2.780e^-4	0.867	INTRON Eip75B
3L	5464392	3L_5464392_SNP [dm3] 3L_5471292_SNP [dm6]	T	A	2.792e^-4	0.867	INTERGENIC
3R	10683363	3R_10683363_SNP [dm3] 3R_14857641_SNP [dm6]	T	C	2.816e^-4	0.867	INTRON btsz
3R	9372869	3R_9372869_SNP [dm3] 3R_13547147_SNP [dm6]	C	T	2.816e^-4	0.867	INTERGENIC
2L	5142392	2L_5142392_SNP [dm3] 2L_5142392_SNP [dm6]	T	G	2.833e^-4	0.867	NON_SYNONYMOUS_CODING Msp300
3L	14722708	3L_14722708_SNP [dm3] 3L_14729608_SNP [dm6]	C	T	2.833e^-4	0.867	DOWNSTREAM CG13473 INTRON ome
3R	13099100	3R_13099100_SNP [dm3] 3R_17273378_SNP [dm6]	T	A	2.839e^-4	0.867	INTERGENIC
2L	21787395	2L_21787395_SNP [dm3] 2L_21787395_SNP [dm6]	A	G	2.844e^-4	0.867	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9449297	3R_9449297_SNP [dm3] 3R_13623575_SNP [dm6]	C	T	2.846e^-4	0.867	INTERGENIC
3L	23954756	3L_23954756_SNP [dm3] 3L_23961656_SNP [dm6]	G	A	2.850e^-4	0.867	INTRON CG40470
2R	17466754	2R_17466754_SNP [dm3] 2R_21579249_SNP [dm6]	G	A	2.854e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5259303	2R_5259303_SNP [dm3] 2R_9371798_SNP [dm6]	A	G	2.857e^-4	0.867	INTRON CG13954	TF binding site mE1_TFBS_cad
2L	10946006	2L_10946006_SNP [dm3] 2L_10946006_SNP [dm6]	A	C	2.861e^-4	0.867	INTRON dpr2
3L	22178188	3L_22178188_SNP [dm3] 3L_22185088_SNP [dm6]	A	C	2.866e^-4	0.867	INTRON olf413	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12586442	2L_12586442_SNP [dm3] 2L_12586442_SNP [dm6]	C	A	2.868e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24704601	3R_24704601_SNP [dm3] 3R_28878879_SNP [dm6]	C	T	2.871e^-4	0.867	SYNONYMOUS_CODING CG14523 INTRON CG33203
3L	23952248	3L_23952248_SNP [dm3] 3L_23959148_SNP [dm6]	A	T	2.872e^-4	0.867	INTRON CG40470
3L	10803305	3L_10803305_SNP [dm3] 3L_10810205_SNP [dm6]	G	A	2.880e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21731488	3R_21731488_INS [dm3] 3R_25905766_INS [dm6]	C	TTTATCTTCATAGTTTTATC...	2.888e^-4	0.867	INTRON CR43259 EXON CR43259
2L	6061006	2L_6061006_SNP [dm3] 2L_6061006_SNP [dm6]	G	A	2.889e^-4	0.867	SYNONYMOUS_CODING CG9140 DOWNSTREAM CG13995 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12264348	2L_12264348_SNP [dm3] 2L_12264348_SNP [dm6]	C	A	2.890e^-4	0.867	INTRON aret
3R	13350926	3R_13350926_SNP [dm3] 3R_17525204_SNP [dm6]	A	T	2.891e^-4	0.867	INTERGENIC
2L	14651811	2L_14651811_SNP [dm3] 2L_14651811_SNP [dm6]	A	C	2.897e^-4	0.867	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	4046731	X_4046731_SNP [dm3] X_4152698_SNP [dm6]	A	G	2.904e^-4	0.867	INTRON Fas2
3R	22480645	3R_22480645_SNP [dm3] 3R_26654923_SNP [dm6]	C	G	2.910e^-4	0.867	INTRON beat-VII	TF binding site mE1_TFBS_bab1
3L	18518543	3L_18518543_SNP [dm3] 3L_18525443_SNP [dm6]	T	G	2.912e^-4	0.867	INTERGENIC
2R	11839205	2R_11839205_SNP [dm3] 2R_15951700_SNP [dm6]	A	T	2.916e^-4	0.867	UTR_3_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
3L	7996646	3L_7996646_INS [dm3] 3L_8003546_INS [dm6]	A	AGTA	2.917e^-4	0.867	INTRON nmo
3L	16017902	3L_16017902_SNP [dm3] 3L_16024802_SNP [dm6]	A	T	2.921e^-4	0.867	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	9454839	3R_9454839_SNP [dm3] 3R_13629117_SNP [dm6]	G	T	2.922e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9347789	2L_9347789_SNP [dm3] 2L_9347789_SNP [dm6]	G	A	2.925e^-4	0.867	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	18630030	3R_18630030_SNP [dm3] 3R_22804308_SNP [dm6]	A	C	2.930e^-4	0.867	UTR_5_PRIME CG7031
X	22264005	X_22264005_SNP [dm3] X_22862169_SNP [dm6]	A	G	2.933e^-4	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13346224	3R_13346224_SNP [dm3] 3R_17520502_SNP [dm6]	A	G	2.934e^-4	0.867	INTERGENIC
3L	15760357	3L_15760357_SNP [dm3] 3L_15767257_SNP [dm6]	C	G	2.935e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	11390725	2L_11390725_SNP [dm3] 2L_11390725_SNP [dm6]	T	G	2.936e^-4	0.867	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
3L	8679532	3L_8679532_SNP [dm3] 3L_8686432_SNP [dm6]	C	T	2.945e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10698345	3R_10698345_SNP [dm3] 3R_14872623_SNP [dm6]	T	C	2.946e^-4	0.867	INTRON btsz
2L	1161239	2L_1161239_SNP [dm3] 2L_1161239_SNP [dm6]	T	A	2.948e^-4	0.867	INTRON CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13351142	3R_13351142_SNP [dm3] 3R_17525420_SNP [dm6]	G	A	2.950e^-4	0.867	INTERGENIC
3R	19541645	3R_19541645_SNP [dm3] 3R_23715923_SNP [dm6]	T	G	2.954e^-4	0.867	INTRON nau	regulatory region REDfly_CRMs
2L	2148015	2L_2148015_SNP [dm3] 2L_2148015_SNP [dm6]	T	C	2.959e^-4	0.867	SYNONYMOUS_CODING CG7261 UPSTREAM CG11723	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9143089	2R_9143089_SNP [dm3] 2R_13255584_SNP [dm6]	T	C	2.979e^-4	0.867	UPSTREAM CR44343 INTERGENIC
2R	20441640	2R_20441640_DEL [dm3] 2R_24554117_DEL [dm6]	TT	C	2.984e^-4	0.867	INTRON CG4622 & 1 other
3L	24032490	3L_24032490_SNP [dm3] 3L_24039390_SNP [dm6]	C	T	2.991e^-4	0.867	INTERGENIC
2R	6724251	2R_6724251_DEL [dm3] 2R_10836746_DEL [dm6]	CCC	C	2.993e^-4	0.867	UTR_3_PRIME CG7686 DOWNSTREAM CG7686
2L	8615782	2L_8615782_DEL [dm3] 2L_8615782_DEL [dm6]	TACTT	T	2.999e^-4	0.867	INTRON Sema-1a
2R	6610472	2R_6610472_SNP [dm3] 2R_10722967_SNP [dm6]	T	C	3.003e^-4	0.867	UTR_3_PRIME Rab3	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13644809	3L_13644809_SNP [dm3] 3L_13651709_SNP [dm6]	G	A	3.004e^-4	0.867	INTRON bru-3
3L	8714435	3L_8714435_SNP [dm3] 3L_8721335_SNP [dm6]	G	A	3.008e^-4	0.867	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14757040	3R_14757040_SNP [dm3] 3R_18931318_SNP [dm6]	A	T	3.012e^-4	0.867	UTR_5_PRIME CG42613	TF binding site mE1_TFBS_Trl
3R	11442284	3R_11442284_SNP [dm3] 3R_15616562_SNP [dm6]	T	C	3.012e^-4	0.867	INTERGENIC
3L	10534414	3L_10534414_SNP [dm3] 3L_10541314_SNP [dm6]	T	C	3.022e^-4	0.867	INTRON A2bp1
3L	13615358	3L_13615358_SNP [dm3] 3L_13622258_SNP [dm6]	C	A	3.023e^-4	0.867	INTRON bru-3
3R	19167960	3R_19167960_SNP [dm3] 3R_23342238_SNP [dm6]	C	T	3.023e^-4	0.867	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	13797751	3R_13797751_SNP [dm3] 3R_17972029_SNP [dm6]	A	G	3.030e^-4	0.867	INTRON cpo
3L	23693012	3L_23693012_SNP [dm3] 3L_23699912_SNP [dm6]	C	T	3.033e^-4	0.867	INTERGENIC	transposable element FlyBase
2L	2339165	2L_2339165_SNP [dm3] 2L_2339165_SNP [dm6]	C	G	3.042e^-4	0.867	SYNONYMOUS_CODING eys INTRON CG9967
2L	7677544	2L_7677544_SNP [dm3] 2L_7677544_SNP [dm6]	A	G	3.045e^-4	0.867	INTRON Myo28B1
3R	17497989	3R_17497989_SNP [dm3] 3R_21672267_SNP [dm6]	G	A	3.051e^-4	0.867	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10722814	X_10722814_SNP [dm3] X_10828781_SNP [dm6]	C	T	3.052e^-4	0.867	INTERGENIC
3L	23691222	3L_23691222_INS [dm3] 3L_23698122_INS [dm6]	A	ATTT	3.059e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	24358374	3L_24358374_SNP [dm3] 3L_24365274_SNP [dm6]	C	T	3.060e^-4	0.867	INTRON nvd
2L	9545737	2L_9545737_SNP [dm3] 2L_9545737_SNP [dm6]	C	T	3.060e^-4	0.867	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2R	9151301	2R_9151301_SNP [dm3] 2R_13263796_SNP [dm6]	C	T	3.064e^-4	0.867	INTRON CG42319
3L	10620716	3L_10620716_SNP [dm3] 3L_10627616_SNP [dm6]	C	T	3.066e^-4	0.867	DOWNSTREAM CG14151 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	1958702	2R_1958702_SNP [dm3] 2R_6071197_SNP [dm6]	T	C	3.078e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19559590	X_19559590_SNP [dm3] X_19665557_SNP [dm6]	G	A	3.079e^-4	0.867	UTR_3_PRIME Ssu72	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	24734907	3R_24734907_SNP [dm3] 3R_28909185_SNP [dm6]	T	A	3.103e^-4	0.867	SYNONYMOUS_CODING Doa UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19112078	2R_19112078_SNP [dm3] 2R_23224555_SNP [dm6]	A	C	3.110e^-4	0.867	INTERGENIC
2R	18087115	2R_18087115_SNP [dm3] 2R_22199610_SNP [dm6]	A	C	3.119e^-4	0.867	INTRON Swim
3L	12000543	3L_12000543_SNP [dm3] 3L_12007443_SNP [dm6]	T	C	3.125e^-4	0.867	DOWNSTREAM rols INTRON CG6928
2L	6885491	2L_6885491_SNP [dm3] 2L_6885491_SNP [dm6]	G	A	3.129e^-4	0.867	INTRON Nlg2
X	5467034	X_5467034_SNP [dm3] X_5573001_SNP [dm6]	C	G	3.133e^-4	0.867	INTERGENIC
2R	6610449	2R_6610449_DEL [dm3] 2R_10722944_DEL [dm6]	TT	T	3.141e^-4	0.867	UTR_3_PRIME Rab3	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	19283665	2L_19283665_SNP [dm3] 2L_19283665_SNP [dm6]	T	C	3.142e^-4	0.867	INTERGENIC
3R	26862708	3R_26862708_SNP [dm3] 3R_31036986_SNP [dm6]	A	G	3.146e^-4	0.867	DOWNSTREAM CG33773 INTERGENIC
2R	8000570	2R_8000570_SNP [dm3] 2R_12113065_SNP [dm6]	C	G	3.154e^-4	0.867	INTRON jeb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13122748	2L_13122748_INS [dm3] 2L_13122748_INS [dm6]	A	AA	3.158e^-4	0.867	INTERGENIC
2R	15680424	2R_15680424_SNP [dm3] 2R_19792919_SNP [dm6]	T	C	3.160e^-4	0.867	INTERGENIC
3R	14754508	3R_14754508_SNP [dm3] 3R_18928786_SNP [dm6]	G	A	3.160e^-4	0.867	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1166414	2L_1166414_SNP [dm3] 2L_1166414_SNP [dm6]	T	G	3.160e^-4	0.867	UTR_3_PRIME IntS14 UPSTREAM CG14341 DOWNSTREAM Plap	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	1167124	2L_1167124_SNP [dm3] 2L_1167124_SNP [dm6]	T	A	3.169e^-4	0.867	NON_SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_chinmo
3L	4347938	3L_4347938_SNP [dm3] 3L_4347938_SNP [dm6]	C	T	3.169e^-4	0.867	DOWNSTREAM CR45156 INTRON Cip4
X	22266660	X_22266660_SNP [dm3] X_22864824_SNP [dm6]	T	A	3.170e^-4	0.867	INTRON CG42346
2R	14321990	2R_14321990_SNP [dm3] 2R_18434485_SNP [dm6]	C	T	3.170e^-4	0.867	INTRON CG30118
3R	16294315	3R_16294315_SNP [dm3] 3R_20468593_SNP [dm6]	G	A	3.171e^-4	0.867	INTRON Gfrl
3L	16483585	3L_16483585_SNP [dm3] 3L_16490485_SNP [dm6]	G	C	3.173e^-4	0.867	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16483751	3L_16483751_SNP [dm3] 3L_16490651_SNP [dm6]	G	A	3.173e^-4	0.867	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	4855638	2L_4855638_SNP [dm3] 2L_4855638_SNP [dm6]	A	T	3.178e^-4	0.867	INTRON pog
3R	8363127	3R_8363127_SNP [dm3] 3R_12537405_SNP [dm6]	A	G	3.182e^-4	0.867	INTRON Octbeta3R
2R	20266116	2R_20266116_SNP [dm3] 2R_24378593_SNP [dm6]	A	G	3.182e^-4	0.867	NON_SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
X	7870975	X_7870975_SNP [dm3] X_7976942_SNP [dm6]	A	G	3.183e^-4	0.867	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17807433	2L_17807433_SNP [dm3] 2L_17807433_SNP [dm6]	A	T	3.186e^-4	0.867	INTRON CadN2
2L	9435695	2L_9435695_SNP [dm3] 2L_9435695_SNP [dm6]	C	T	3.194e^-4	0.867	SYNONYMOUS_CODING CG3769 DOWNSTREAM scat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10321696	3L_10321696_SNP [dm3] 3L_10328596_SNP [dm6]	G	A	3.197e^-4	0.867	INTERGENIC
3L	13769630	3L_13769630_SNP [dm3] 3L_13776530_SNP [dm6]	C	A	3.199e^-4	0.867	INTRON bru-3
2L	9314316	2L_9314316_SNP [dm3] 2L_9314316_SNP [dm6]	A	G	3.201e^-4	0.867	INTERGENIC
2L	11867211	2L_11867211_SNP [dm3] 2L_11867211_SNP [dm6]	G	C	3.203e^-4	0.867	INTRON Pde1c
2R	10354386	2R_10354386_SNP [dm3] 2R_14466881_SNP [dm6]	C	A	3.205e^-4	0.867	DOWNSTREAM Oaz INTERGENIC
3R	20937232	3R_20937232_SNP [dm3] 3R_25111510_SNP [dm6]	G	A	3.206e^-4	0.867	SYNONYMOUS_CODING CG13650	TF binding site mE1_TFBS_cad
3L	10803312	3L_10803312_SNP [dm3] 3L_10810212_SNP [dm6]	A	G	3.207e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11170823	3L_11170823_SNP [dm3] 3L_11177723_SNP [dm6]	C	A	3.218e^-4	0.867	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
3R	3469072	3R_3469072_INS [dm3] 3R_7643350_INS [dm6]	C	CATTAAGA	3.219e^-4	0.867	INTERGENIC	transposable element FlyBase
3R	3469074	3R_3469074_INS [dm3] 3R_7643352_INS [dm6]	A	AGT	3.219e^-4	0.867	INTERGENIC	transposable element FlyBase
2L	2447323	2L_2447323_SNP [dm3] 2L_2447323_SNP [dm6]	T	C	3.220e^-4	0.867	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9407447	2L_9407447_SNP [dm3] 2L_9407447_SNP [dm6]	C	T	3.221e^-4	0.867	INTRON Shawl
2R	2932798	2R_2932798_SNP [dm3] 2R_7045293_SNP [dm6]	C	T	3.225e^-4	0.867	UPSTREAM Tsp42El DOWNSTREAM Tsp42Ek INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11330376	3L_11330376_INS [dm3] 3L_11337276_INS [dm6]	T	TT	3.226e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_sens
2R	12911689	2R_12911689_SNP [dm3] 2R_17024184_SNP [dm6]	G	C	3.235e^-4	0.867	SYNONYMOUS_CODING Ark UTR_3_PRIME Ark EXON CR44390
2L	2903316	2L_2903316_SNP [dm3] 2L_2903316_SNP [dm6]	A	G	3.237e^-4	0.867	INTRON lilli	TF binding site mE1_TFBS_chinmo
2L	4219229	2L_4219229_SNP [dm3] 2L_4219229_SNP [dm6]	G	C	3.238e^-4	0.867	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14682274	3L_14682274_SNP [dm3] 3L_14689174_SNP [dm6]	T	A	3.242e^-4	0.867	INTRON ome
2R	18936117	2R_18936117_SNP [dm3] 2R_23048594_SNP [dm6]	T	A	3.247e^-4	0.867	DOWNSTREAM twi INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22661876	3L_22661876_SNP [dm3] 3L_22668776_SNP [dm6]	G	A	3.250e^-4	0.867	DOWNSTREAM mir-958 INTRON CR43270
3R	27235243	3R_27235243_SNP [dm3] 3R_31409521_SNP [dm6]	G	A	3.253e^-4	0.867	INTRON Gprk2
X	22264490	X_22264490_SNP [dm3] X_22862654_SNP [dm6]	C	G	3.273e^-4	0.867	INTRON CG42346	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12300435	3R_12300435_SNP [dm3] 3R_16474713_SNP [dm6]	A	G	3.273e^-4	0.867	SYNONYMOUS_CODING Gyc-89Da	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10520198	3L_10520198_SNP [dm3] 3L_10527098_SNP [dm6]	G	A	3.279e^-4	0.867	INTRON A2bp1
3L	24066707	3L_24066707_SNP [dm3] 3L_24073607_SNP [dm6]	G	T	3.283e^-4	0.867	UPSTREAM Snap25 INTERGENIC
3R	3482030	3R_3482030_SNP [dm3] 3R_7656308_SNP [dm6]	A	C	3.285e^-4	0.867	INTERGENIC
X	4942821	X_4942821_SNP [dm3] X_5048788_SNP [dm6]	C	T	3.290e^-4	0.867	UTR_5_PRIME ovo INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	9886347	2L_9886347_SNP [dm3] 2L_9886347_SNP [dm6]	G	T	3.294e^-4	0.867	UPSTREAM CR44701 & 1 other INTERGENIC
3R	10737422	3R_10737422_SNP [dm3] 3R_14911700_SNP [dm6]	T	C	3.295e^-4	0.867	INTERGENIC
3L	10534419	3L_10534419_SNP [dm3] 3L_10541319_SNP [dm6]	G	T	3.298e^-4	0.867	INTRON A2bp1
X	19178939	X_19178939_SNP [dm3] X_19284906_SNP [dm6]	A	T	3.302e^-4	0.867	UPSTREAM CG8034 INTRON CG8034
3L	13767716	3L_13767716_SNP [dm3] 3L_13774616_SNP [dm6]	A	T	3.304e^-4	0.867	INTRON bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12264590	2L_12264590_DEL [dm3] 2L_12264590_DEL [dm6]	CC	G	3.310e^-4	0.867	INTRON aret
3L	10775925	3L_10775925_SNP [dm3] 3L_10782825_SNP [dm6]	A	G	3.311e^-4	0.867	INTERGENIC
2L	3343905	2L_3343905_SNP [dm3] 2L_3343905_SNP [dm6]	G	A	3.314e^-4	0.867	INTRON E23
3L	11344665	3L_11344665_SNP [dm3] 3L_11351565_SNP [dm6]	A	G	3.319e^-4	0.867	INTERGENIC
2L	11378411	2L_11378411_SNP [dm3] 2L_11378411_SNP [dm6]	A	T	3.319e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	14410483	3L_14410483_SNP [dm3] 3L_14417383_SNP [dm6]	T	G	3.321e^-4	0.867	INTRON bbg
2L	800734	2L_800734_SNP [dm3] 2L_800734_SNP [dm6]	G	C	3.324e^-4	0.867	DOWNSTREAM CR45259 INTERGENIC
3R	4769370	3R_4769370_SNP [dm3] 3R_8943648_SNP [dm6]	A	G	3.327e^-4	0.867	SYNONYMOUS_CODING CG11964 DOWNSTREAM skap	TF binding site mE1_TFBS_sens
2R	12829327	2R_12829327_SNP [dm3] 2R_16941822_SNP [dm6]	A	G	3.329e^-4	0.867	SYNONYMOUS_CODING Pkc53E
3R	13705141	3R_13705141_SNP [dm3] 3R_17879419_SNP [dm6]	G	A	3.334e^-4	0.867	INTRON Rim
3L	23717134	3L_23717134_SNP [dm3] 3L_23724034_SNP [dm6]	A	G	3.339e^-4	0.867	INTERGENIC
2L	13116496	2L_13116496_SNP [dm3] 2L_13116496_SNP [dm6]	A	C	3.341e^-4	0.867	INTERGENIC
X	5146250	X_5146250_SNP [dm3] X_5252217_SNP [dm6]	T	A	3.343e^-4	0.867	UTR_3_PRIME CG15465 & 1 other	TF binding site mE1_TFBS_kn
3L	4352665	3L_4352665_SNP [dm3] 3L_4352665_SNP [dm6]	A	C	3.348e^-4	0.867	INTRON Cip4
2R	8592484	2R_8592484_DEL [dm3] 2R_12704979_DEL [dm6]	AG	C	3.348e^-4	0.867	UPSTREAM CG42663 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16504418	3L_16504418_SNP [dm3] 3L_16511318_SNP [dm6]	G	A	3.354e^-4	0.867	INTRON CG43373
2L	9335662	2L_9335662_SNP [dm3] 2L_9335662_SNP [dm6]	T	A	3.360e^-4	0.867	INTRON Eaat1
2R	18272591	2R_18272591_SNP [dm3] 2R_22385086_SNP [dm6]	T	C	3.365e^-4	0.867	INTRON CG13506
2L	7705508	2L_7705508_SNP [dm3] 2L_7705508_SNP [dm6]	C	T	3.367e^-4	0.867	SYNONYMOUS_CODING Tep3
3R	13095187	3R_13095187_SNP [dm3] 3R_17269465_SNP [dm6]	T	G	3.370e^-4	0.867	DOWNSTREAM CR44258 INTERGENIC
2R	14095224	2R_14095224_SNP [dm3] 2R_18207719_SNP [dm6]	G	A	3.372e^-4	0.867	UPSTREAM CG30114 INTERGENIC
3R	26487608	3R_26487608_SNP [dm3] 3R_30661886_SNP [dm6]	A	T	3.378e^-4	0.867	INTERGENIC
3L	14722448	3L_14722448_SNP [dm3] 3L_14729348_SNP [dm6]	G	T	3.387e^-4	0.867	DOWNSTREAM CG13473 INTRON ome
3L	4310284	3L_4310284_SNP [dm3] 3L_4310284_SNP [dm6]	G	A	3.394e^-4	0.867	INTERGENIC
3L	2045995	3L_2045995_SNP [dm3] 3L_2045995_SNP [dm6]	A	G	3.399e^-4	0.867	SYNONYMOUS_CODING sls INTRON sls
2R	12885201	2R_12885201_SNP [dm3] 2R_16997696_SNP [dm6]	T	C	3.409e^-4	0.867	SYNONYMOUS_CODING ste24c UTR_5_PRIME CG30461 UPSTREAM CG30461 DOWNSTREAM ste24b	TF binding site BDTNP1_TFBS_sna
3L	4063619	3L_4063619_SNP [dm3] 3L_4063619_SNP [dm6]	T	C	3.413e^-4	0.867	SYNONYMOUS_CODING dib DOWNSTREAM wit	TF binding site mE1_TFBS_cad
3L	4352401	3L_4352401_SNP [dm3] 3L_4352401_SNP [dm6]	C	A	3.422e^-4	0.867	INTRON Cip4
3R	23811181	3R_23811181_SNP [dm3] 3R_27985459_SNP [dm6]	A	C	3.425e^-4	0.867	INTRON betaTub97EF
2L	800411	2L_800411_SNP [dm3] 2L_800411_SNP [dm6]	A	G	3.433e^-4	0.867	DOWNSTREAM CR45259 INTERGENIC
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	3.434e^-4	0.867	INTRON bbg
2L	14954108	2L_14954108_SNP [dm3] 2L_14954108_SNP [dm6]	T	A	3.437e^-4	0.867	INTRON CG42313
3R	13802191	3R_13802191_SNP [dm3] 3R_17976469_SNP [dm6]	A	G	3.450e^-4	0.867	INTRON cpo
X	11409458	X_11409458_INS [dm3] X_11515425_INS [dm6]	G	CTGTTCTGC	3.453e^-4	0.867	INTRON Drak	TF binding site mE1_TFBS_Kr
X	11409471	X_11409471_SNP [dm3] X_11515438_SNP [dm6]	C	T	3.453e^-4	0.867	INTRON Drak	TF binding site mE1_TFBS_Kr
2R	8360355	2R_8360355_SNP [dm3] 2R_12472850_SNP [dm6]	A	C	3.455e^-4	0.867	SYNONYMOUS_CODING CG8550
3L	2092656	3L_2092656_SNP [dm3] 3L_2092656_SNP [dm6]	T	C	3.464e^-4	0.867	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18594331	3L_18594331_SNP [dm3] 3L_18601231_SNP [dm6]	C	G	3.467e^-4	0.867	INTRON CG13380 & 1 other
2R	10354390	2R_10354390_SNP [dm3] 2R_14466885_SNP [dm6]	C	G	3.473e^-4	0.867	INTERGENIC
2L	13040944	2L_13040944_INS [dm3] 2L_13040944_INS [dm6]	T	TGC	3.477e^-4	0.867	INTRON CG9932
3L	18828552	3L_18828552_SNP [dm3] 3L_18835452_SNP [dm6]	A	T	3.480e^-4	0.867	INTRON Indy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14725578	3L_14725578_SNP [dm3] 3L_14732478_SNP [dm6]	T	A	3.482e^-4	0.867	DOWNSTREAM CG13471 INTRON ome
3L	18148497	3L_18148497_SNP [dm3] 3L_18155397_SNP [dm6]	A	G	3.484e^-4	0.867	SYNONYMOUS_CODING CG13699
3R	16294387	3R_16294387_SNP [dm3] 3R_20468665_SNP [dm6]	C	T	3.492e^-4	0.867	INTRON Gfrl
3L	4611493	3L_4611493_SNP [dm3] 3L_4611493_SNP [dm6]	C	G	3.493e^-4	0.867	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
X	10377064	X_10377064_SNP [dm3] X_10483031_SNP [dm6]	C	G	3.495e^-4	0.867	SYNONYMOUS_CODING CG32687
3L	16490015	3L_16490015_DEL [dm3] 3L_16496915_DEL [dm6]	CA	T	3.497e^-4	0.867	UPSTREAM CG42514 & 1 other DOWNSTREAM CG33158 INTRON CG43373
3L	16949957	3L_16949957_SNP [dm3] 3L_16956857_SNP [dm6]	T	G	3.500e^-4	0.867	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2R	10806643	2R_10806643_SNP [dm3] 2R_14919138_SNP [dm6]	T	C	3.502e^-4	0.867	INTRON CG10249	TF binding site mE1_TFBS_cnc
3R	26960433	3R_26960433_DEL [dm3] 3R_31134711_DEL [dm6]	TT	T	3.504e^-4	0.867	INTRON Gycbeta100B
3R	13364199	3R_13364199_SNP [dm3] 3R_17538477_SNP [dm6]	C	T	3.505e^-4	0.867	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3L	16483806	3L_16483806_INS [dm3] 3L_16490706_INS [dm6]	A	ACGCATTAA	3.510e^-4	0.867	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	1164103	2L_1164103_SNP [dm3] 2L_1164103_SNP [dm6]	T	A	3.516e^-4	0.868	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17517349	2L_17517349_SNP [dm3] 2L_17517349_SNP [dm6]	G	A	3.528e^-4	0.868	INTRON Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19216651	3R_19216651_SNP [dm3] 3R_23390929_SNP [dm6]	C	A	3.539e^-4	0.868	DOWNSTREAM CR43387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	7278954	3R_7278954_SNP [dm3] 3R_11453232_SNP [dm6]	G	A	3.545e^-4	0.868	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
X	5544474	X_5544474_SNP [dm3] X_5650441_SNP [dm6]	G	A	3.551e^-4	0.868	DOWNSTREAM CG42265 INTERGENIC
3R	15754600	3R_15754600_SNP [dm3] 3R_19928878_SNP [dm6]	C	T	3.562e^-4	0.868	UPSTREAM CG4459 DOWNSTREAM Hs6st INTERGENIC	TF binding site mE1_TFBS_cad
X	21300620	X_21300620_SNP [dm3] X_21429593_SNP [dm6]	G	A	3.564e^-4	0.868	UPSTREAM CG10918 INTRON CG42343
2R	14666963	2R_14666963_INS [dm3] 2R_18779458_INS [dm6]	T	TCTGTG	3.570e^-4	0.868	INTERGENIC
3R	15755410	3R_15755410_SNP [dm3] 3R_19929688_SNP [dm6]	A	G	3.577e^-4	0.868	UTR_3_PRIME Hs6st DOWNSTREAM Hs6st
3L	18485096	3L_18485096_SNP [dm3] 3L_18491996_SNP [dm6]	C	A	3.579e^-4	0.868	INTRON AstC-R2
3R	18839386	3R_18839386_SNP [dm3] 3R_23013664_SNP [dm6]	C	T	3.582e^-4	0.868	INTRON CG6688	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10534445	3L_10534445_SNP [dm3] 3L_10541345_SNP [dm6]	A	T	3.583e^-4	0.868	INTRON A2bp1
3R	21580809	3R_21580809_SNP [dm3] 3R_25755087_SNP [dm6]	A	T	3.584e^-4	0.868	INTRON LpR1
3L	23695291	3L_23695291_SNP [dm3] 3L_23702191_SNP [dm6]	A	G	3.585e^-4	0.868	INTERGENIC	transposable element FlyBase
3R	13384006	3R_13384006_SNP [dm3] 3R_17558284_SNP [dm6]	A	G	3.594e^-4	0.868	UPSTREAM Hmx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	17938506	2L_17938506_SNP [dm3] 2L_17938506_SNP [dm6]	C	A	3.614e^-4	0.868	DOWNSTREAM CR44399 INTERGENIC
3L	8145901	3L_8145901_DEL [dm3] 3L_8152801_DEL [dm6]	TT	T	3.619e^-4	0.868	UPSTREAM CG13676 INTERGENIC
2L	4347759	2L_4347759_SNP [dm3] 2L_4347759_SNP [dm6]	G	T	3.632e^-4	0.868	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26837819	3R_26837819_SNP [dm3] 3R_31012097_SNP [dm6]	T	G	3.643e^-4	0.868	INTRON 5-HT7
X	17807636	X_17807636_SNP [dm3] X_17913603_SNP [dm6]	G	A	3.647e^-4	0.868	INTRON CG6847
3R	10747752	3R_10747752_SNP [dm3] 3R_14922030_SNP [dm6]	A	T	3.647e^-4	0.868	UTR_3_PRIME Sdr
2L	11380832	2L_11380832_SNP [dm3] 2L_11380832_SNP [dm6]	C	T	3.648e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs
3R	26456178	3R_26456178_SNP [dm3] 3R_30630456_SNP [dm6]	T	C	3.648e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
X	10070001	X_10070001_SNP [dm3] X_10175968_SNP [dm6]	G	T	3.649e^-4	0.868	INTRON CG43902 & 1 other
2R	6758389	2R_6758389_SNP [dm3] 2R_10870884_SNP [dm6]	G	A	3.658e^-4	0.868	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9701535	3R_9701535_SNP [dm3] 3R_13875813_SNP [dm6]	T	C	3.664e^-4	0.868	UPSTREAM E5 INTRON E5	TF binding site BDTNP1_TFBS_dl
2R	14690396	2R_14690396_SNP [dm3] 2R_18802891_SNP [dm6]	C	G	3.665e^-4	0.868	UTR_5_PRIME l_2_08717 UPSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	5259293	2R_5259293_SNP [dm3] 2R_9371788_SNP [dm6]	A	T	3.666e^-4	0.868	INTRON CG13954	TF binding site mE1_TFBS_cad
2R	1824435	2R_1824435_INS [dm3] 2R_5936930_INS [dm6]	T	TATATTTCAGAAAATTAATT...	3.672e^-4	0.868	UPSTREAM CR44126 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14992279	2L_14992279_SNP [dm3] 2L_14992279_SNP [dm6]	A	G	3.680e^-4	0.868	INTRON mol
2R	14820751	2R_14820751_SNP [dm3] 2R_18933246_SNP [dm6]	G	T	3.681e^-4	0.868	INTRON sano
3L	24075459	3L_24075459_SNP [dm3] 3L_24082359_SNP [dm6]	C	T	3.685e^-4	0.868	INTRON Snap25
3R	1583231	3R_1583231_SNP [dm3] 3R_5757509_SNP [dm6]	C	T	3.702e^-4	0.868	NON_SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad
X	3960241	X_3960241_SNP [dm3] X_4066208_SNP [dm6]	G	A	3.710e^-4	0.868	INTERGENIC
3R	17705972	3R_17705972_SNP [dm3] 3R_21880250_SNP [dm6]	A	T	3.712e^-4	0.868	NON_SYNONYMOUS_CODING P5CDh2 UPSTREAM CG31465 EXON CR45046
2L	9334496	2L_9334496_SNP [dm3] 2L_9334496_SNP [dm6]	A	G	3.720e^-4	0.868	INTRON Eaat1
2R	18616001	2R_18616001_SNP [dm3] 2R_22728496_SNP [dm6]	A	G	3.722e^-4	0.868	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	13040942	2L_13040942_SNP [dm3] 2L_13040942_SNP [dm6]	A	G	3.724e^-4	0.868	INTRON CG9932
3L	10874267	3L_10874267_SNP [dm3] 3L_10881167_SNP [dm6]	G	A	3.727e^-4	0.868	SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15815301	3R_15815301_SNP [dm3] 3R_19989579_SNP [dm6]	T	G	3.732e^-4	0.868	INTRON Hs6st
3L	5410511	3L_5410511_SNP [dm3] 3L_5417411_SNP [dm6]	C	T	3.746e^-4	0.868	INTERGENIC
2L	4000101	2L_4000101_SNP [dm3] 2L_4000101_SNP [dm6]	A	G	3.754e^-4	0.868	NON_SYNONYMOUS_CODING CG43797 UPSTREAM CR45344
3L	17945189	3L_17945189_SNP [dm3] 3L_17952089_SNP [dm6]	C	T	3.755e^-4	0.868	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
2L	11375337	2L_11375337_SNP [dm3] 2L_11375337_SNP [dm6]	T	C	3.756e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs
3L	23994348	3L_23994348_SNP [dm3] 3L_24001248_SNP [dm6]	G	T	3.758e^-4	0.868	INTERGENIC
3L	24027872	3L_24027872_SNP [dm3] 3L_24034772_SNP [dm6]	G	A	3.772e^-4	0.868	INTRON CG40045	TF binding site mE1_TFBS_inv
3L	10534098	3L_10534098_SNP [dm3] 3L_10540998_SNP [dm6]	A	C	3.772e^-4	0.868	INTRON A2bp1
2L	13883576	2L_13883576_SNP [dm3] 2L_13883576_SNP [dm6]	T	C	3.774e^-4	0.868	INTRON CenG1A
X	16321056	X_16321056_SNP [dm3] X_16427023_SNP [dm6]	C	T	3.775e^-4	0.868	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	3469099	3R_3469099_SNP [dm3] 3R_7643377_SNP [dm6]	T	C	3.783e^-4	0.868	INTERGENIC	transposable element FlyBase
3L	4352399	3L_4352399_SNP [dm3] 3L_4352399_SNP [dm6]	T	C	3.791e^-4	0.868	INTRON Cip4
X	21283927	X_21283927_INS [dm3] X_21412900_INS [dm6]	C	AAAG	3.791e^-4	0.868	INTERGENIC
3R	13351132	3R_13351132_DEL [dm3] 3R_17525410_DEL [dm6]	ATTAT	A	3.798e^-4	0.868	INTERGENIC
2L	1164108	2L_1164108_DEL [dm3] 2L_1164108_DEL [dm6]	CGGCGAAATCCAAGCC...	C	3.801e^-4	0.868	UPSTREAM IntS14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	24392986	3L_24392986_SNP [dm3] 3L_24399886_SNP [dm6]	T	C	3.808e^-4	0.868	INTRON nvd
X	11409452	X_11409452_SNP [dm3] X_11515419_SNP [dm6]	T	C	3.812e^-4	0.868	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	15754603	3R_15754603_SNP [dm3] 3R_19928881_SNP [dm6]	T	A	3.813e^-4	0.868	UPSTREAM CG4459 DOWNSTREAM Hs6st INTERGENIC	TF binding site mE1_TFBS_cad
2L	8370954	2L_8370954_SNP [dm3] 2L_8370954_SNP [dm6]	C	T	3.819e^-4	0.868	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3L	10321655	3L_10321655_SNP [dm3] 3L_10328555_SNP [dm6]	T	C	3.820e^-4	0.868	INTERGENIC
2L	1166479	2L_1166479_SNP [dm3] 2L_1166479_SNP [dm6]	C	A	3.821e^-4	0.868	UPSTREAM CG14341 DOWNSTREAM Plap & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	23969634	3L_23969634_SNP [dm3] 3L_23976534_SNP [dm6]	T	C	3.824e^-4	0.868	INTRON CG40470
2L	13040996	2L_13040996_SNP [dm3] 2L_13040996_SNP [dm6]	C	T	3.829e^-4	0.868	INTRON CG9932
X	16277867	X_16277867_SNP [dm3] X_16383834_SNP [dm6]	G	A	3.832e^-4	0.868	UPSTREAM CG9992 INTRON CG9992	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	3.834e^-4	0.868	INTRON numb
2R	4470871	2R_4470871_SNP [dm3] 2R_8583366_SNP [dm6]	G	A	3.834e^-4	0.868	INTRON CG42326
3R	13346885	3R_13346885_SNP [dm3] 3R_17521163_SNP [dm6]	T	C	3.835e^-4	0.868	INTERGENIC
3L	22419832	3L_22419832_SNP [dm3] 3L_22426732_SNP [dm6]	A	G	3.848e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	24033022	3L_24033022_SNP [dm3] 3L_24039922_SNP [dm6]	C	T	3.849e^-4	0.868	INTERGENIC
2L	14992273	2L_14992273_SNP [dm3] 2L_14992273_SNP [dm6]	A	G	3.849e^-4	0.868	INTRON mol
3L	13597912	3L_13597912_SNP [dm3] 3L_13604812_SNP [dm6]	T	C	3.854e^-4	0.868	INTRON bru-3
3R	5203825	3R_5203825_SNP [dm3] 3R_9378103_SNP [dm6]	G	T	3.859e^-4	0.868	INTRON FER	TF binding site BDTNP1_TFBS_twi
2L	8338499	2L_8338499_SNP [dm3] 2L_8338499_SNP [dm6]	G	T	3.870e^-4	0.868	INTRON CG14274
2L	13849316	2L_13849316_SNP [dm3] 2L_13849316_SNP [dm6]	T	A	3.878e^-4	0.868	UPSTREAM CG7968 DOWNSTREAM CG7953 INTRON CenG1A
3L	13633648	3L_13633648_SNP [dm3] 3L_13640548_SNP [dm6]	G	T	3.879e^-4	0.868	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10758414	3R_10758414_SNP [dm3] 3R_14932692_SNP [dm6]	G	A	3.894e^-4	0.868	INTERGENIC
3L	16483773	3L_16483773_SNP [dm3] 3L_16490673_SNP [dm6]	C	A	3.901e^-4	0.868	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	8327764	X_8327764_SNP [dm3] X_8433731_SNP [dm6]	G	A	3.904e^-4	0.868	DOWNSTREAM CG12125 & 1 other INTRON CG32712
3R	1583325	3R_1583325_SNP [dm3] 3R_5757603_SNP [dm6]	G	A	3.905e^-4	0.868	SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3646152	X_3646152_SNP [dm3] X_3752119_SNP [dm6]	T	C	3.906e^-4	0.868	INTRON tlk
3L	16017900	3L_16017900_SNP [dm3] 3L_16024800_SNP [dm6]	A	T	3.910e^-4	0.868	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	18272594	2R_18272594_SNP [dm3] 2R_22385089_SNP [dm6]	G	T	3.916e^-4	0.868	INTRON CG13506
3L	2045959	3L_2045959_SNP [dm3] 3L_2045959_SNP [dm6]	T	C	3.929e^-4	0.868	SYNONYMOUS_CODING sls INTRON sls
2L	12024110	2L_12024110_SNP [dm3] 2L_12024110_SNP [dm6]	T	C	3.931e^-4	0.868	EXON CR44587
2R	19974893	2R_19974893_SNP [dm3] 2R_24087370_SNP [dm6]	T	A	3.934e^-4	0.868	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12930563	2L_12930563_SNP [dm3] 2L_12930563_SNP [dm6]	G	A	3.935e^-4	0.868	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3R	14027230	3R_14027230_SNP [dm3] 3R_18201508_SNP [dm6]	A	T	3.936e^-4	0.868	INTRON CG7985
3L	18242029	3L_18242029_SNP [dm3] 3L_18248929_SNP [dm6]	G	A	3.937e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13351273	3R_13351273_DEL [dm3] 3R_17525551_DEL [dm6]	ATTTTACGCGCA...	A	3.938e^-4	0.868	INTERGENIC
3R	26895109	3R_26895109_SNP [dm3] 3R_31069387_SNP [dm6]	T	C	3.947e^-4	0.868	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27235242	3R_27235242_SNP [dm3] 3R_31409520_SNP [dm6]	G	C	3.948e^-4	0.868	INTRON Gprk2
X	6823936	X_6823936_SNP [dm3] X_6929903_SNP [dm6]	A	G	3.951e^-4	0.868	INTRON CG14431
3R	9442222	3R_9442222_SNP [dm3] 3R_13616500_SNP [dm6]	T	C	3.951e^-4	0.868	DOWNSTREAM CG9269 INTERGENIC
3R	13350855	3R_13350855_SNP [dm3] 3R_17525133_SNP [dm6]	A	T	3.953e^-4	0.868	INTERGENIC
3R	16891329	3R_16891329_SNP [dm3] 3R_21065607_SNP [dm6]	A	T	3.954e^-4	0.868	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	13040982	2L_13040982_SNP [dm3] 2L_13040982_SNP [dm6]	A	G	3.954e^-4	0.868	INTRON CG9932
3R	9454674	3R_9454674_SNP [dm3] 3R_13628952_SNP [dm6]	T	C	3.963e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13042073	2L_13042073_SNP [dm3] 2L_13042073_SNP [dm6]	G	A	3.971e^-4	0.868	INTRON CG9932
2L	1147722	2L_1147722_SNP [dm3] 2L_1147722_SNP [dm6]	C	G	3.971e^-4	0.868	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC	TF binding site mE1_TFBS_cad
3L	23687611	3L_23687611_DEL [dm3] 3L_23694511_DEL [dm6]	AA	A	3.976e^-4	0.868	INTERGENIC	transposable element FlyBase
2R	19671834	2R_19671834_SNP [dm3] 2R_23784311_SNP [dm6]	T	A	3.979e^-4	0.868	INTRON CG9850
2L	10462521	2L_10462521_SNP [dm3] 2L_10462521_SNP [dm6]	G	A	3.984e^-4	0.868	DOWNSTREAM RluA-1 & 1 other INTERGENIC
3L	24170609	3L_24170609_SNP [dm3] 3L_24177509_SNP [dm6]	C	T	3.991e^-4	0.868	INTRON Snap25
2L	8174915	2L_8174915_SNP [dm3] 2L_8174915_SNP [dm6]	C	T	3.992e^-4	0.868	INTRON Piezo	TF binding site mE1_TFBS_HSA
3L	8724286	3L_8724286_INS [dm3] 3L_8731186_INS [dm6]	G	GG	4.004e^-4	0.868	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3R	21235071	3R_21235071_SNP [dm3] 3R_25409349_SNP [dm6]	A	T	4.021e^-4	0.868	INTRON Fur1
3L	2103390	3L_2103390_SNP [dm3] 3L_2103390_SNP [dm6]	T	G	4.024e^-4	0.868	INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18139069	2R_18139069_SNP [dm3] 2R_22251564_SNP [dm6]	G	C	4.029e^-4	0.868	INTRON dve
2L	12050651	2L_12050651_SNP [dm3] 2L_12050651_SNP [dm6]	T	C	4.031e^-4	0.868	SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo
2R	4366100	2R_4366100_SNP [dm3] 2R_8478595_SNP [dm6]	C	A	4.039e^-4	0.868	INTRON mtt
3R	13350816	3R_13350816_SNP [dm3] 3R_17525094_SNP [dm6]	G	C	4.039e^-4	0.868	INTERGENIC
3L	8712586	3L_8712586_SNP [dm3] 3L_8719486_SNP [dm6]	A	T	4.043e^-4	0.868	SYNONYMOUS_CODING SrpRbeta DOWNSTREAM CG32022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3R	21580791	3R_21580791_SNP [dm3] 3R_25755069_SNP [dm6]	A	C	4.045e^-4	0.868	INTRON LpR1
3L	1206269	3L_1206269_SNP [dm3] 3L_1206269_SNP [dm6]	G	A	4.048e^-4	0.868	NON_SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10875915	3R_10875915_SNP [dm3] 3R_15050193_SNP [dm6]	C	T	4.052e^-4	0.868	INTERGENIC
3L	3006907	3L_3006907_SNP [dm3] 3L_3006907_SNP [dm6]	A	G	4.074e^-4	0.868	INTRON FMRFaR
X	19459255	X_19459255_SNP [dm3] X_19565222_SNP [dm6]	G	A	4.079e^-4	0.868	SYNONYMOUS_CODING Grip84 START_GAINED Grip84 UTR_5_PRIME Grip84 UPSTREAM car	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13704983	3R_13704983_SNP [dm3] 3R_17879261_SNP [dm6]	C	G	4.085e^-4	0.868	INTRON Rim	TF binding site mE1_TFBS_inv
2L	16907052	2L_16907052_SNP [dm3] 2L_16907052_SNP [dm6]	A	G	4.088e^-4	0.868	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
2R	3749326	2R_3749326_INS [dm3] 2R_7861821_INS [dm6]	G	GTAGG	4.095e^-4	0.868	INTRON Dgk
3L	4611508	3L_4611508_INS [dm3] 3L_4611508_INS [dm6]	T	TATGT	4.103e^-4	0.868	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3L	4611517	3L_4611517_INS [dm3] 3L_4611517_INS [dm6]	G	GCAGG	4.103e^-4	0.868	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3L	4611524	3L_4611524_SNP [dm3] 3L_4611524_SNP [dm6]	C	T	4.103e^-4	0.868	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3L	4611543	3L_4611543_SNP [dm3] 3L_4611543_SNP [dm6]	T	A	4.103e^-4	0.868	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3R	3168162	3R_3168162_SNP [dm3] 3R_7342440_SNP [dm6]	G	T	4.104e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	8592472	2R_8592472_SNP [dm3] 2R_12704967_SNP [dm6]	C	T	4.117e^-4	0.868	UPSTREAM CG42663 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12264586	2L_12264586_SNP [dm3] 2L_12264586_SNP [dm6]	C	G	4.130e^-4	0.868	INTRON aret
3L	13769635	3L_13769635_SNP [dm3] 3L_13776535_SNP [dm6]	C	T	4.135e^-4	0.868	INTRON bru-3
2L	10945898	2L_10945898_SNP [dm3] 2L_10945898_SNP [dm6]	A	C	4.138e^-4	0.868	INTRON dpr2
2R	8795048	2R_8795048_SNP [dm3] 2R_12907543_SNP [dm6]	G	A	4.139e^-4	0.868	DOWNSTREAM CR44461 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1579985	3R_1579985_SNP [dm3] 3R_5754263_SNP [dm6]	T	G	4.148e^-4	0.868	DOWNSTREAM Sec8 INTRON CG2091	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	5470961	2L_5470961_SNP [dm3] 2L_5470961_SNP [dm6]	G	A	4.152e^-4	0.868	INTERGENIC
3L	646478	3L_646478_SNP [dm3] 3L_646478_SNP [dm6]	A	T	4.153e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10578091	3R_10578091_SNP [dm3] 3R_14752369_SNP [dm6]	G	T	4.159e^-4	0.868	NON_SYNONYMOUS_CODING CG7362 INTRON jvl
3R	13117805	3R_13117805_SNP [dm3] 3R_17292083_SNP [dm6]	G	T	4.174e^-4	0.868	INTERGENIC
2L	13116459	2L_13116459_SNP [dm3] 2L_13116459_SNP [dm6]	A	G	4.178e^-4	0.868	INTERGENIC
2R	18895205	2R_18895205_INS [dm3] 2R_23007682_INS [dm6]	T	TGTTTAT	4.178e^-4	0.868	INTRON twi	TF binding site BDTNP1_TFBS_twi
3L	12031082	3L_12031082_SNP [dm3] 3L_12037982_SNP [dm6]	G	T	4.180e^-4	0.868	INTRON rols
3L	4344980	3L_4344980_SNP [dm3] 3L_4344980_SNP [dm6]	T	A	4.183e^-4	0.868	UPSTREAM CR45156 INTRON Cip4
3L	4344981	3L_4344981_SNP [dm3] 3L_4344981_SNP [dm6]	T	A	4.183e^-4	0.868	UPSTREAM CR45156 INTRON Cip4
2R	14783512	2R_14783512_SNP [dm3] 2R_18896007_SNP [dm6]	T	A	4.184e^-4	0.868	INTRON sano
3R	11466478	3R_11466478_SNP [dm3] 3R_15640756_SNP [dm6]	A	G	4.184e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16482104	3L_16482104_SNP [dm3] 3L_16489004_SNP [dm6]	G	A	4.186e^-4	0.868	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14892835	2R_14892835_SNP [dm3] 2R_19005330_SNP [dm6]	C	T	4.188e^-4	0.868	INTRON tn
2L	9382881	2L_9382881_INS [dm3] 2L_9382881_INS [dm6]	C	CGC	4.191e^-4	0.868	INTRON Shawl
X	21300629	X_21300629_SNP [dm3] X_21429602_SNP [dm6]	A	C	4.200e^-4	0.868	UPSTREAM CG10918 INTRON CG42343
3L	21129400	3L_21129400_SNP [dm3] 3L_21136300_SNP [dm6]	T	C	4.207e^-4	0.868	START_GAINED CG10565 UTR_5_PRIME CG10565 UPSTREAM CG10565 DOWNSTREAM Ac78C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	20260832	3L_20260832_SNP [dm3] 3L_20267732_SNP [dm6]	T	G	4.215e^-4	0.868	NON_SYNONYMOUS_CODING CG32228
3R	13350906	3R_13350906_SNP [dm3] 3R_17525184_SNP [dm6]	A	C	4.217e^-4	0.868	INTERGENIC
2R	12169346	2R_12169346_SNP [dm3] 2R_16281841_SNP [dm6]	G	A	4.219e^-4	0.868	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21012956	2L_21012956_SNP [dm3] 2L_21012956_SNP [dm6]	C	G	4.241e^-4	0.868	INTRON CG42238
3R	27147622	3R_27147622_SNP [dm3] 3R_31321900_SNP [dm6]	G	A	4.241e^-4	0.868	INTRON CG34347
X	4867078	X_4867078_SNP [dm3] X_4973045_SNP [dm6]	G	A	4.243e^-4	0.868	INTRON CR44833	TF binding site BDTNP1_TFBS_da
3L	13769622	3L_13769622_SNP [dm3] 3L_13776522_SNP [dm6]	A	T	4.247e^-4	0.868	INTRON bru-3
3R	13351140	3R_13351140_SNP [dm3] 3R_17525418_SNP [dm6]	A	T	4.249e^-4	0.868	INTERGENIC
3R	11455228	3R_11455228_SNP [dm3] 3R_15629506_SNP [dm6]	A	G	4.253e^-4	0.868	INTERGENIC
2L	9316567	2L_9316567_SNP [dm3] 2L_9316567_SNP [dm6]	A	T	4.259e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1629330	2R_1629330_SNP [dm3] 2R_5741825_SNP [dm6]	G	A	4.265e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23864263	3L_23864263_SNP [dm3] 3L_23871163_SNP [dm6]	T	C	4.265e^-4	0.868	INTRON CG40470
2L	9844088	2L_9844088_SNP [dm3] 2L_9844088_SNP [dm6]	C	G	4.270e^-4	0.868	INTRON nAChRalpha6
X	13365930	X_13365930_SNP [dm3] X_13471897_SNP [dm6]	C	T	4.272e^-4	0.868	INTRON Neto
2R	1721835	2R_1721835_INS [dm3] 2R_5834330_INS [dm6]	A	AC	4.273e^-4	0.868	INTRON dpr12
2R	14716078	2R_14716078_SNP [dm3] 2R_18828573_SNP [dm6]	A	C	4.280e^-4	0.868	INTRON CG15097
3R	13351022	3R_13351022_SNP [dm3] 3R_17525300_SNP [dm6]	A	G	4.287e^-4	0.868	INTERGENIC
3L	14682288	3L_14682288_SNP [dm3] 3L_14689188_SNP [dm6]	T	A	4.287e^-4	0.868	INTRON ome
3L	4791445	3L_4791445_SNP [dm3] 3L_4791445_SNP [dm6]	T	A	4.291e^-4	0.868	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	10858753	3L_10858753_DEL [dm3] 3L_10865653_DEL [dm6]	CC	C	4.294e^-4	0.868	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16950080	3L_16950080_SNP [dm3] 3L_16956980_SNP [dm6]	T	C	4.295e^-4	0.868	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3L	7388435	3L_7388435_SNP [dm3] 3L_7395335_SNP [dm6]	A	T	4.296e^-4	0.868	INTRON CG8563
2R	17276327	2R_17276327_SNP [dm3] 2R_21388822_SNP [dm6]	T	A	4.298e^-4	0.868	UPSTREAM Acox57D-d INTRON Acox57D-p
2R	12082780	2R_12082780_SNP [dm3] 2R_16195275_SNP [dm6]	C	A	4.303e^-4	0.868	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9452082	3R_9452082_SNP [dm3] 3R_13626360_SNP [dm6]	G	C	4.305e^-4	0.868	INTERGENIC
3L	23881066	3L_23881066_SNP [dm3] 3L_23887966_SNP [dm6]	A	T	4.311e^-4	0.868	INTRON CG40470
2L	14954067	2L_14954067_SNP [dm3] 2L_14954067_SNP [dm6]	C	A	4.328e^-4	0.869	INTRON CG42313
3L	11458424	3L_11458424_SNP [dm3] 3L_11465324_SNP [dm6]	C	A	4.330e^-4	0.869	UTR_5_PRIME CG6140 INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	1682070	2R_1682070_SNP [dm3] 2R_5794565_SNP [dm6]	A	T	4.332e^-4	0.869	UPSTREAM Tsp42A INTERGENIC	transposable element FlyBase
3L	20526943	3L_20526943_SNP [dm3] 3L_20533843_SNP [dm6]	T	C	4.334e^-4	0.869	UPSTREAM CG13250 INTRON Rcd2 & 1 other
3R	23309218	3R_23309218_SNP [dm3] 3R_27483496_SNP [dm6]	A	G	4.337e^-4	0.869	DOWNSTREAM Cyp6a18 INTERGENIC
3L	11624731	3L_11624731_INS [dm3] 3L_11631631_INS [dm6]	T	TTCT	4.345e^-4	0.87	DOWNSTREAM CG18815 INTRON CG32091
2R	19091896	2R_19091896_SNP [dm3] 2R_23204373_SNP [dm6]	A	T	4.362e^-4	0.87	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	9446318	3R_9446318_DEL [dm3] 3R_13620596_DEL [dm6]	CCGC	C	4.371e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19703098	3R_19703098_SNP [dm3] 3R_23877376_SNP [dm6]	T	G	4.379e^-4	0.87	INTRON Pli
2L	9586098	2L_9586098_SNP [dm3] 2L_9586098_SNP [dm6]	C	G	4.379e^-4	0.87	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	786263	2L_786263_SNP [dm3] 2L_786263_SNP [dm6]	G	A	4.384e^-4	0.87	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544
X	6892105	X_6892105_SNP [dm3] X_6998072_SNP [dm6]	T	C	4.389e^-4	0.87	UPSTREAM Inx2 & 1 other INTRON Inx7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7654322	2R_7654322_SNP [dm3] 2R_11766817_SNP [dm6]	A	C	4.390e^-4	0.87	INTRON ths
3R	14754345	3R_14754345_SNP [dm3] 3R_18928623_SNP [dm6]	C	T	4.396e^-4	0.87	UTR_5_PRIME Mpc1 UPSTREAM CG42613	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19108117	2R_19108117_SNP [dm3] 2R_23220594_SNP [dm6]	G	A	4.399e^-4	0.87	INTERGENIC
3L	18722951	3L_18722951_SNP [dm3] 3L_18729851_SNP [dm6]	A	C	4.411e^-4	0.87	INTERGENIC
2L	13040882	2L_13040882_SNP [dm3] 2L_13040882_SNP [dm6]	A	G	4.415e^-4	0.87	INTRON CG9932
3R	13351115	3R_13351115_DEL [dm3] 3R_17525393_DEL [dm6]	CATCATAATGTCAAAT...	C	4.415e^-4	0.87	INTERGENIC
3L	11387957	3L_11387957_SNP [dm3] 3L_11394857_SNP [dm6]	C	G	4.444e^-4	0.87	SYNONYMOUS_CODING CG11726
X	4797556	X_4797556_SNP [dm3] X_4903523_SNP [dm6]	T	C	4.446e^-4	0.87	INTRON CG42594
3R	13364203	3R_13364203_SNP [dm3] 3R_17538481_SNP [dm6]	G	A	4.457e^-4	0.87	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
2L	18047693	2L_18047693_SNP [dm3] 2L_18047693_SNP [dm6]	G	A	4.463e^-4	0.87	INTRON rdo
3R	15632953	3R_15632953_SNP [dm3] 3R_19807231_SNP [dm6]	A	T	4.465e^-4	0.87	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17704898	3R_17704898_SNP [dm3] 3R_21879176_SNP [dm6]	A	T	4.470e^-4	0.87	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG34148 EXON CR45046	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21283924	X_21283924_SNP [dm3] X_21412897_SNP [dm6]	A	G	4.476e^-4	0.87	INTERGENIC
3L	23863847	3L_23863847_SNP [dm3] 3L_23870747_SNP [dm6]	T	C	4.482e^-4	0.87	INTRON CG40470
2L	11383885	2L_11383885_INS [dm3] 2L_11383885_INS [dm6]	T	TT	4.485e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
2R	6528176	2R_6528176_SNP [dm3] 2R_10640671_SNP [dm6]	A	C	4.485e^-4	0.87	NON_SYNONYMOUS_CODING CG11883 UTR_3_PRIME CG11883
3L	24396050	3L_24396050_SNP [dm3] 3L_24402950_SNP [dm6]	T	A	4.485e^-4	0.87	INTERGENIC
2R	19900041	2R_19900041_SNP [dm3] 2R_24012518_SNP [dm6]	A	G	4.488e^-4	0.87	SYNONYMOUS_CODING Unc-89 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo
2L	9344882	2L_9344882_SNP [dm3] 2L_9344882_SNP [dm6]	C	A	4.496e^-4	0.87	DOWNSTREAM CG3748 INTERGENIC
X	21328297	X_21328297_SNP [dm3] X_21457270_SNP [dm6]	C	T	4.499e^-4	0.87	INTRON CG42343
3L	24043472	3L_24043472_SNP [dm3] 3L_24050372_SNP [dm6]	T	G	4.508e^-4	0.87	INTERGENIC
3R	8815045	3R_8815045_SNP [dm3] 3R_12989323_SNP [dm6]	G	A	4.512e^-4	0.87	SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
3L	5547250	3L_5547250_DEL [dm3] 3L_5554150_DEL [dm6]	CT	C	4.513e^-4	0.87	INTERGENIC
2L	10939518	2L_10939518_SNP [dm3] 2L_10939518_SNP [dm6]	A	G	4.514e^-4	0.87	INTRON dpr2
X	9688288	X_9688288_SNP [dm3] X_9794255_SNP [dm6]	A	G	4.522e^-4	0.87	UPSTREAM CG32698 INTRON CG32698
3L	1893928	3L_1893928_SNP [dm3] 3L_1893928_SNP [dm6]	T	C	4.523e^-4	0.87	SYNONYMOUS_CODING CG1887
2L	9344206	2L_9344206_SNP [dm3] 2L_9344206_SNP [dm6]	C	T	4.524e^-4	0.87	SYNONYMOUS_CODING CG3748
2L	1374185	2L_1374185_SNP [dm3] 2L_1374185_SNP [dm6]	G	T	4.536e^-4	0.87	INTERGENIC
2L	4682025	2L_4682025_SNP [dm3] 2L_4682025_SNP [dm6]	C	G	4.539e^-4	0.87	UPSTREAM CG11929 INTERGENIC
3R	14340238	3R_14340238_SNP [dm3] 3R_18514516_SNP [dm6]	T	A	4.540e^-4	0.87	UTR_5_PRIME fru INTRON fru
3R	21580786	3R_21580786_SNP [dm3] 3R_25755064_SNP [dm6]	G	T	4.542e^-4	0.87	INTRON LpR1
3L	8542485	3L_8542485_SNP [dm3] 3L_8549385_SNP [dm6]	T	A	4.543e^-4	0.87	INTRON rhea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19904760	3R_19904760_SNP [dm3] 3R_24079038_SNP [dm6]	A	C	4.544e^-4	0.87	INTRON 4EHP
3L	3117436	3L_3117436_SNP [dm3] 3L_3117436_SNP [dm6]	G	A	4.545e^-4	0.87	DOWNSTREAM prominin-like INTRON prominin-like
2L	10933533	2L_10933533_SNP [dm3] 2L_10933533_SNP [dm6]	A	G	4.545e^-4	0.87	INTRON dpr2
3L	1739986	3L_1739986_SNP [dm3] 3L_1739986_SNP [dm6]	A	T	4.552e^-4	0.87	INTRON Gk
2R	6943290	2R_6943290_SNP [dm3] 2R_11055785_SNP [dm6]	T	C	4.552e^-4	0.87	INTRON luna
2L	9337587	2L_9337587_SNP [dm3] 2L_9337587_SNP [dm6]	C	A	4.552e^-4	0.87	UPSTREAM Eaat1 INTRON Eaat1
3R	19904596	3R_19904596_SNP [dm3] 3R_24078874_SNP [dm6]	T	A	4.554e^-4	0.87	INTRON 4EHP
3L	8795618	3L_8795618_SNP [dm3] 3L_8802518_SNP [dm6]	G	A	4.563e^-4	0.871	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311
3R	16885294	3R_16885294_SNP [dm3] 3R_21059572_SNP [dm6]	T	C	4.568e^-4	0.871	UTR_5_PRIME Mvl INTRON Mvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	5466997	X_5466997_SNP [dm3] X_5572964_SNP [dm6]	G	A	4.579e^-4	0.871	INTERGENIC
2R	7027002	2R_7027002_SNP [dm3] 2R_11139497_SNP [dm6]	G	T	4.579e^-4	0.871	UTR_3_PRIME CG13229 DOWNSTREAM CG13229 & 1 other
3L	11623811	3L_11623811_SNP [dm3] 3L_11630711_SNP [dm6]	T	C	4.592e^-4	0.872	UTR_3_PRIME CG18815 UPSTREAM CG32091 DOWNSTREAM CG18815
2R	2989583	2R_2989583_SNP [dm3] 2R_7102078_SNP [dm6]	C	T	4.594e^-4	0.872	INTRON esn
3R	5347016	3R_5347016_SNP [dm3] 3R_9521294_SNP [dm6]	G	T	4.599e^-4	0.872	UTR_5_PRIME CG8176 DOWNSTREAM JHDM2
3L	8714416	3L_8714416_SNP [dm3] 3L_8721316_SNP [dm6]	G	C	4.605e^-4	0.872	UPSTREAM CG6511 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20947673	2L_20947673_SNP [dm3] 2L_20947673_SNP [dm6]	A	G	4.608e^-4	0.872	EXON CR44606
3R	13350984	3R_13350984_SNP [dm3] 3R_17525262_SNP [dm6]	G	A	4.619e^-4	0.872	INTERGENIC
3L	24250778	3L_24250778_SNP [dm3] 3L_24257678_SNP [dm6]	A	C	4.619e^-4	0.872	INTRON Snap25
3R	19301198	3R_19301198_SNP [dm3] 3R_23475476_SNP [dm6]	A	T	4.630e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	23197949	3L_23197949_SNP [dm3] 3L_23204849_SNP [dm6]	C	G	4.643e^-4	0.873	INTERGENIC	transposable element FlyBase
3R	18111430	3R_18111430_SNP [dm3] 3R_22285708_SNP [dm6]	C	G	4.648e^-4	0.873	SPLICE_SITE_REGION SKIP INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	4.652e^-4	0.873	INTERGENIC
3R	9450064	3R_9450064_SNP [dm3] 3R_13624342_SNP [dm6]	C	G	4.657e^-4	0.873	INTERGENIC
2L	9465382	2L_9465382_SNP [dm3] 2L_9465382_SNP [dm6]	G	A	4.658e^-4	0.873	INTERGENIC
3R	1571124	3R_1571124_SNP [dm3] 3R_5745402_SNP [dm6]	G	A	4.660e^-4	0.873	SYNONYMOUS_CODING Madm	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv

By genomic position
Variant impact
Gene name

mn_Resp_Eugenol phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results