DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.351e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1869 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16914633	2R_16914633_SNP [dm3] 2R_21027128_SNP [dm6]	A	G	1.773e^-6	0.968	INTERGENIC
X	21508612	X_21508612_SNP [dm3] X_21637585_SNP [dm6]	T	C	3.770e^-6	0.968	INTERGENIC	transposable element FlyBase
2L	16494529	2L_16494529_SNP [dm3] 2L_16494529_SNP [dm6]	A	T	4.752e^-6	0.968	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16494527	2L_16494527_SNP [dm3] 2L_16494527_SNP [dm6]	G	T	5.336e^-6	0.968	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9059869	2L_9059869_SNP [dm3] 2L_9059869_SNP [dm6]	A	T	6.066e^-6	0.968	INTRON CG31708
2L	5321443	2L_5321443_SNP [dm3] 2L_5321443_SNP [dm6]	T	A	6.441e^-6	0.968	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10258221	2L_10258221_SNP [dm3] 2L_10258221_SNP [dm6]	T	C	6.645e^-6	0.968	INTRON Pten
3L	9542063	3L_9542063_DEL [dm3] 3L_9548963_DEL [dm6]	ACGTCCA	A	7.103e^-6	0.968	INTRON CG42673
3L	5316693	3L_5316693_SNP [dm3] 3L_5323593_SNP [dm6]	T	A	8.058e^-6	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16919790	2R_16919790_SNP [dm3] 2R_21032285_SNP [dm6]	G	C	8.077e^-6	0.968	INTERGENIC
X	13249774	X_13249774_SNP [dm3] X_13355741_SNP [dm6]	G	A	8.241e^-6	0.968	INTERGENIC
X	4373126	X_4373126_SNP [dm3] X_4479093_SNP [dm6]	C	A	8.941e^-6	0.968	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	16914769	2R_16914769_SNP [dm3] 2R_21027264_SNP [dm6]	G	C	9.231e^-6	0.968	INTERGENIC
2L	16494433	2L_16494433_SNP [dm3] 2L_16494433_SNP [dm6]	C	T	9.433e^-6	0.968	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8358470	3L_8358470_SNP [dm3] 3L_8365370_SNP [dm6]	A	T	9.469e^-6	0.968	INTERGENIC
2L	12120314	2L_12120314_SNP [dm3] 2L_12120314_SNP [dm6]	G	T	9.580e^-6	0.968	INTRON CG17211
3L	8032877	3L_8032877_SNP [dm3] 3L_8039777_SNP [dm6]	T	A	9.763e^-6	0.968	INTRON nmo
2L	1664046	2L_1664046_SNP [dm3] 2L_1664046_SNP [dm6]	T	C	1.208e^-5	0.968	INTRON chinmo
2R	3735241	2R_3735241_SNP [dm3] 2R_7847736_SNP [dm6]	A	G	1.269e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2L	9059858	2L_9059858_INS [dm3] 2L_9059858_INS [dm6]	A	AA	1.277e^-5	0.968	INTRON CG31708
2R	9696037	2R_9696037_SNP [dm3] 2R_13808532_SNP [dm6]	A	C	1.454e^-5	0.968	INTRON stj
X	7280567	X_7280567_SNP [dm3] X_7386534_SNP [dm6]	T	G	1.595e^-5	0.968	INTRON CG1677 & 1 other
2R	3735261	2R_3735261_SNP [dm3] 2R_7847756_SNP [dm6]	T	A	1.642e^-5	0.968	UPSTREAM Dgk INTRON Dgk
X	11100476	X_11100476_SNP [dm3] X_11206443_SNP [dm6]	A	G	1.656e^-5	0.968	INTERGENIC
2R	16916737	2R_16916737_SNP [dm3] 2R_21029232_SNP [dm6]	A	T	1.698e^-5	0.968	DOWNSTREAM CR45148 INTERGENIC
3R	7416365	3R_7416365_SNP [dm3] 3R_11590643_SNP [dm6]	G	T	1.718e^-5	0.968	UTR_3_PRIME Jupiter UPSTREAM CG6791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	9390429	3R_9390429_SNP [dm3] 3R_13564707_SNP [dm6]	A	C	1.758e^-5	0.968	INTERGENIC
2R	18645692	2R_18645692_SNP [dm3] 2R_22758187_SNP [dm6]	C	T	1.821e^-5	0.968	SYNONYMOUS_CODING CG42260 EXON CR30267
2R	3735244	2R_3735244_SNP [dm3] 2R_7847739_SNP [dm6]	A	T	1.855e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2R	16919069	2R_16919069_SNP [dm3] 2R_21031564_SNP [dm6]	T	A	1.923e^-5	0.968	INTERGENIC
2L	6330099	2L_6330099_SNP [dm3] 2L_6330099_SNP [dm6]	T	C	1.943e^-5	0.968	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
X	7280545	X_7280545_SNP [dm3] X_7386512_SNP [dm6]	T	A	1.952e^-5	0.968	INTRON CG1677 & 1 other
3R	26010409	3R_26010409_SNP [dm3] 3R_30184687_SNP [dm6]	C	A	2.047e^-5	0.968	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
2L	7518763	2L_7518763_SNP [dm3] 2L_7518763_SNP [dm6]	C	T	2.061e^-5	0.968	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13565261	3L_13565261_SNP [dm3] 3L_13572161_SNP [dm6]	A	G	2.144e^-5	0.968	INTRON bru-3
3L	12281536	3L_12281536_SNP [dm3] 3L_12288436_SNP [dm6]	A	G	2.155e^-5	0.968	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3735361	2R_3735361_SNP [dm3] 2R_7847856_SNP [dm6]	C	A	2.160e^-5	0.968	UPSTREAM Dgk INTRON Dgk
3L	16299055	3L_16299055_SNP [dm3] 3L_16305955_SNP [dm6]	G	A	2.257e^-5	0.968	UPSTREAM CG13063 & 1 other INTERGENIC
3L	8032870	3L_8032870_DEL [dm3] 3L_8039770_DEL [dm6]	AA	A	2.284e^-5	0.968	INTRON nmo
2R	3735264	2R_3735264_SNP [dm3] 2R_7847759_SNP [dm6]	T	C	2.455e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2L	16494524	2L_16494524_SNP [dm3] 2L_16494524_SNP [dm6]	T	G	2.538e^-5	0.968	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5316695	3L_5316695_SNP [dm3] 3L_5323595_SNP [dm6]	G	T	2.849e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12281534	3L_12281534_SNP [dm3] 3L_12288434_SNP [dm6]	G	A	2.855e^-5	0.968	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5321674	2L_5321674_SNP [dm3] 2L_5321674_SNP [dm6]	T	G	2.907e^-5	0.968	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16913473	2R_16913473_SNP [dm3] 2R_21025968_SNP [dm6]	A	C	2.911e^-5	0.968	NON_SYNONYMOUS_CODING CG9350	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3735247	2R_3735247_DEL [dm3] 2R_7847742_DEL [dm6]	TATGTGT	CC	2.921e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	2.997e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8527545	3R_8527545_SNP [dm3] 3R_12701823_SNP [dm6]	C	T	3.025e^-5	0.968	INTRON Past1
2R	17637018	2R_17637018_SNP [dm3] 2R_21749513_SNP [dm6]	C	T	3.049e^-5	0.968	INTERGENIC
X	11100487	X_11100487_SNP [dm3] X_11206454_SNP [dm6]	A	T	3.072e^-5	0.968	INTERGENIC
3L	2893109	3L_2893109_SNP [dm3] 3L_2893109_SNP [dm6]	T	A	3.077e^-5	0.968	UPSTREAM spz5 INTERGENIC
X	11100516	X_11100516_SNP [dm3] X_11206483_SNP [dm6]	T	A	3.104e^-5	0.968	INTERGENIC
2R	17992423	2R_17992423_SNP [dm3] 2R_22104918_SNP [dm6]	A	G	3.134e^-5	0.968	SYNONYMOUS_CODING CG6613
2R	19242875	2R_19242875_SNP [dm3] 2R_23355352_SNP [dm6]	T	A	3.152e^-5	0.968	UTR_5_PRIME Rpi DOWNSTREAM CG30409	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4195918	2L_4195918_SNP [dm3] 2L_4195918_SNP [dm6]	A	T	3.165e^-5	0.968	INTRON CG3714
3L	8358505	3L_8358505_SNP [dm3] 3L_8365405_SNP [dm6]	T	C	3.170e^-5	0.968	INTERGENIC
X	11100497	X_11100497_SNP [dm3] X_11206464_SNP [dm6]	C	T	3.291e^-5	0.968	INTERGENIC
2L	4195945	2L_4195945_SNP [dm3] 2L_4195945_SNP [dm6]	C	G	3.367e^-5	0.968	INTRON CG3714
2L	8174009	2L_8174009_SNP [dm3] 2L_8174009_SNP [dm6]	C	A	3.559e^-5	0.968	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4462597	X_4462597_SNP [dm3] X_4568564_SNP [dm6]	A	T	3.562e^-5	0.968	INTRON CR32773
2R	10817230	2R_10817230_SNP [dm3] 2R_14929725_SNP [dm6]	A	T	3.587e^-5	0.968	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
2R	6489063	2R_6489063_SNP [dm3] 2R_10601558_SNP [dm6]	T	G	3.615e^-5	0.968	INTRON psq
2R	3735255	2R_3735255_SNP [dm3] 2R_7847750_SNP [dm6]	C	A	3.619e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2R	3735288	2R_3735288_SNP [dm3] 2R_7847783_SNP [dm6]	A	T	3.694e^-5	0.968	UPSTREAM Dgk INTRON Dgk
3R	21456557	3R_21456557_SNP [dm3] 3R_25630835_SNP [dm6]	A	G	3.756e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2180936	3L_2180936_SNP [dm3] 3L_2180936_SNP [dm6]	G	T	3.889e^-5	0.968	INTERGENIC
3R	17402668	3R_17402668_SNP [dm3] 3R_21576946_SNP [dm6]	T	C	3.921e^-5	0.968	SYNONYMOUS_CODING InR
X	3714593	X_3714593_DEL [dm3] X_3820560_DEL [dm6]	TCTCGAAT	T	3.979e^-5	0.968	DOWNSTREAM tRNA:CR32785 INTRON ec
3R	7661557	3R_7661557_DEL [dm3] 3R_11835835_DEL [dm6]	ACTGCGAA	A	4.040e^-5	0.968	INTRON CG6959
3L	8032660	3L_8032660_SNP [dm3] 3L_8039560_SNP [dm6]	C	G	4.067e^-5	0.968	INTRON nmo	TF binding site mE1_TFBS_inv
3R	17402647	3R_17402647_SNP [dm3] 3R_21576925_SNP [dm6]	A	G	4.109e^-5	0.968	SYNONYMOUS_CODING InR
2L	10011609	2L_10011609_SNP [dm3] 2L_10011609_SNP [dm6]	C	T	4.239e^-5	0.968	SPLICE_SITE_REGION Trp1 SYNONYMOUS_CODING Trp1
2R	16914722	2R_16914722_SNP [dm3] 2R_21027217_SNP [dm6]	G	A	4.247e^-5	0.968	INTERGENIC
3L	8358483	3L_8358483_SNP [dm3] 3L_8365383_SNP [dm6]	A	G	4.378e^-5	0.968	INTERGENIC
2R	16917622	2R_16917622_SNP [dm3] 2R_21030117_SNP [dm6]	C	G	4.448e^-5	0.968	UPSTREAM CR45148 INTERGENIC
2L	8985158	2L_8985158_SNP [dm3] 2L_8985158_SNP [dm6]	T	C	4.642e^-5	0.968	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9377665	3R_9377665_SNP [dm3] 3R_13551943_SNP [dm6]	G	A	4.728e^-5	0.968	INTERGENIC
X	9597103	X_9597103_SNP [dm3] X_9703070_SNP [dm6]	A	G	4.800e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	3735245	2R_3735245_SNP [dm3] 2R_7847740_SNP [dm6]	A	C	4.835e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2R	18645632	2R_18645632_SNP [dm3] 2R_22758127_SNP [dm6]	T	G	4.842e^-5	0.968	SYNONYMOUS_CODING CG42260 EXON CR30267
2R	7149429	2R_7149429_SNP [dm3] 2R_11261924_SNP [dm6]	T	G	4.866e^-5	0.968	UPSTREAM Cpr47Ed INTERGENIC
3R	11712593	3R_11712593_SNP [dm3] 3R_15886871_SNP [dm6]	G	T	4.918e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18648769	2R_18648769_SNP [dm3] 2R_22761264_SNP [dm6]	G	A	4.923e^-5	0.968	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9542079	3L_9542079_SNP [dm3] 3L_9548979_SNP [dm6]	C	T	5.143e^-5	0.968	INTRON CG42673
2L	9158808	2L_9158808_SNP [dm3] 2L_9158808_SNP [dm6]	A	G	5.181e^-5	0.968	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	3735285	2R_3735285_SNP [dm3] 2R_7847780_SNP [dm6]	A	T	5.269e^-5	0.968	UPSTREAM Dgk INTRON Dgk
3R	26004279	3R_26004279_SNP [dm3] 3R_30178557_SNP [dm6]	G	A	5.280e^-5	0.968	SYNONYMOUS_CODING CG15530 UPSTREAM CG1983	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7129938	2R_7129938_SNP [dm3] 2R_11242433_SNP [dm6]	T	G	5.317e^-5	0.968	UPSTREAM Listericin INTERGENIC
3R	9390242	3R_9390242_SNP [dm3] 3R_13564520_SNP [dm6]	T	G	5.401e^-5	0.968	INTERGENIC
3R	25312146	3R_25312146_SNP [dm3] 3R_29486424_SNP [dm6]	C	T	5.438e^-5	0.968	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
3R	7517397	3R_7517397_SNP [dm3] 3R_11691675_SNP [dm6]	C	T	5.452e^-5	0.968	NON_SYNONYMOUS_CODING CG18765	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4990719	3L_4990719_SNP [dm3] 3L_4990719_SNP [dm6]	G	C	5.502e^-5	0.968	INTRON Con
3L	13565300	3L_13565300_SNP [dm3] 3L_13572200_SNP [dm6]	C	T	5.517e^-5	0.968	INTRON bru-3
3R	7130115	3R_7130115_SNP [dm3] 3R_11304393_SNP [dm6]	C	T	5.624e^-5	0.968	INTRON CR31386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18722236	2R_18722236_SNP [dm3] 2R_22834713_SNP [dm6]	C	T	5.634e^-5	0.968	NON_SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265
2L	11681916	2L_11681916_SNP [dm3] 2L_11681916_SNP [dm6]	G	T	5.656e^-5	0.968	INTERGENIC
3L	10923949	3L_10923949_SNP [dm3] 3L_10930849_SNP [dm6]	C	T	5.693e^-5	0.968	INTERGENIC
X	21508680	X_21508680_SNP [dm3] X_21637653_SNP [dm6]	T	C	5.710e^-5	0.968	INTERGENIC	transposable element FlyBase
3L	9541907	3L_9541907_SNP [dm3] 3L_9548807_SNP [dm6]	C	T	5.719e^-5	0.968	INTRON CG42673
2R	3735270	2R_3735270_DEL [dm3] 2R_7847765_DEL [dm6]	TGA	G	5.728e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2R	20406969	2R_20406969_SNP [dm3] 2R_24519446_SNP [dm6]	G	T	5.791e^-5	0.968	SYNONYMOUS_CODING Ir60d DOWNSTREAM Ir60c	TF binding site mE1_TFBS_cad
2L	16695375	2L_16695375_SNP [dm3] 2L_16695375_SNP [dm6]	T	A	5.840e^-5	0.968	UPSTREAM grp INTRON grp
3R	11712592	3R_11712592_SNP [dm3] 3R_15886870_SNP [dm6]	G	T	5.842e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21344531	X_21344531_DEL [dm3] X_21473504_DEL [dm6]	GATG	G	5.916e^-5	0.968	INTERGENIC
2L	9011371	2L_9011371_SNP [dm3] 2L_9011371_SNP [dm6]	A	C	5.946e^-5	0.968	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	7280531	X_7280531_SNP [dm3] X_7386498_SNP [dm6]	T	A	5.975e^-5	0.968	INTRON CG1677 & 1 other
2R	9105843	2R_9105843_SNP [dm3] 2R_13218338_SNP [dm6]	A	G	6.003e^-5	0.968	INTRON CG4630
3L	12061531	3L_12061531_SNP [dm3] 3L_12068431_SNP [dm6]	G	A	6.028e^-5	0.968	SYNONYMOUS_CODING Sema-5c
3R	9390215	3R_9390215_SNP [dm3] 3R_13564493_SNP [dm6]	C	T	6.036e^-5	0.968	INTERGENIC
2L	5321396	2L_5321396_SNP [dm3] 2L_5321396_SNP [dm6]	T	A	6.048e^-5	0.968	NON_SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4858504	2L_4858504_SNP [dm3] 2L_4858504_SNP [dm6]	A	T	6.107e^-5	0.968	INTRON pog
2L	12371136	2L_12371136_SNP [dm3] 2L_12371136_SNP [dm6]	T	G	6.115e^-5	0.968	INTRON bru-2
3R	14283901	3R_14283901_DEL [dm3] 3R_18458179_DEL [dm6]	GTTAT	G	6.211e^-5	0.968	INTRON fru
X	3180976	X_3180976_DEL [dm3] X_3286943_DEL [dm6]	TG	T	6.229e^-5	0.968	INTRON dnc
2L	9694896	2L_9694896_SNP [dm3] 2L_9694896_SNP [dm6]	C	T	6.286e^-5	0.968	INTRON Pka-C1
2R	15811001	2R_15811001_SNP [dm3] 2R_19923496_SNP [dm6]	C	T	6.312e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	8891144	3L_8891144_SNP [dm3] 3L_8898044_SNP [dm6]	T	C	6.332e^-5	0.968	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26009143	3R_26009143_SNP [dm3] 3R_30183421_SNP [dm6]	T	A	6.402e^-5	0.968	DOWNSTREAM CR44262 INTERGENIC
3L	875096	3L_875096_SNP [dm3] 3L_875096_SNP [dm6]	C	T	6.417e^-5	0.968	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad
2R	13392390	2R_13392390_SNP [dm3] 2R_17504885_SNP [dm6]	T	A	6.468e^-5	0.968	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
2L	8870650	2L_8870650_SNP [dm3] 2L_8870650_SNP [dm6]	A	G	6.533e^-5	0.968	INTERGENIC
3R	7155352	3R_7155352_SNP [dm3] 3R_11329630_SNP [dm6]	A	G	6.555e^-5	0.968	UTR_5_PRIME pros
3L	2892875	3L_2892875_SNP [dm3] 3L_2892875_SNP [dm6]	A	G	6.583e^-5	0.968	UPSTREAM spz5 INTERGENIC
2R	12214913	2R_12214913_DEL [dm3] 2R_16327408_DEL [dm6]	GT	G	6.613e^-5	0.968	INTRON Vha44
2L	11186177	2L_11186177_SNP [dm3] 2L_11186177_SNP [dm6]	T	C	6.666e^-5	0.968	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1285917	2L_1285917_SNP [dm3] 2L_1285917_SNP [dm6]	C	T	6.673e^-5	0.968	SYNONYMOUS_CODING robo3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	3735281	2R_3735281_SNP [dm3] 2R_7847776_SNP [dm6]	A	T	6.726e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2R	10776520	2R_10776520_SNP [dm3] 2R_14889015_SNP [dm6]	C	G	6.730e^-5	0.968	UPSTREAM Cyp6a8 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	7280558	X_7280558_SNP [dm3] X_7386525_SNP [dm6]	A	C	6.740e^-5	0.968	INTRON CG1677 & 1 other
3R	7517845	3R_7517845_SNP [dm3] 3R_11692123_SNP [dm6]	C	T	6.902e^-5	0.968	UPSTREAM CG18765 INTERGENIC
3L	8885658	3L_8885658_SNP [dm3] 3L_8892558_SNP [dm6]	C	T	7.022e^-5	0.968	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	7.062e^-5	0.968	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2L	3887947	2L_3887947_SNP [dm3] 2L_3887947_SNP [dm6]	A	T	7.080e^-5	0.968	INTRON capu
X	4462848	X_4462848_SNP [dm3] X_4568815_SNP [dm6]	C	T	7.122e^-5	0.968	INTRON CR32773
2R	15828515	2R_15828515_SNP [dm3] 2R_19941010_SNP [dm6]	A	T	7.258e^-5	0.968	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2893148	3L_2893148_DEL [dm3] 3L_2893148_DEL [dm6]	AGATTTTCAG	A	7.568e^-5	0.968	UPSTREAM spz5 INTERGENIC
2L	1114595	2L_1114595_SNP [dm3] 2L_1114595_SNP [dm6]	G	A	7.608e^-5	0.968	DOWNSTREAM Pino & 1 other INTERGENIC
2R	16957783	2R_16957783_SNP [dm3] 2R_21070278_SNP [dm6]	A	T	7.689e^-5	0.968	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
3R	26010634	3R_26010634_SNP [dm3] 3R_30184912_SNP [dm6]	G	T	7.763e^-5	0.968	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
2R	11740837	2R_11740837_SNP [dm3] 2R_15853332_SNP [dm6]	C	A	7.772e^-5	0.968	UTR_3_PRIME tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13419350	2R_13419350_SNP [dm3] 2R_17531845_SNP [dm6]	A	T	7.786e^-5	0.968	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8449203	3L_8449203_SNP [dm3] 3L_8456103_SNP [dm6]	C	T	7.815e^-5	0.968	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5578246	2L_5578246_SNP [dm3] 2L_5578246_SNP [dm6]	G	A	7.837e^-5	0.968	INTERGENIC
2R	9694641	2R_9694641_SNP [dm3] 2R_13807136_SNP [dm6]	G	A	7.845e^-5	0.968	INTRON stj	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8557214	3L_8557214_SNP [dm3] 3L_8564114_SNP [dm6]	C	A	8.007e^-5	0.968	INTRON rhea
3L	8915992	3L_8915992_SNP [dm3] 3L_8922892_SNP [dm6]	G	T	8.024e^-5	0.968	INTRON Tsp66E
3L	17303736	3L_17303736_SNP [dm3] 3L_17310636_SNP [dm6]	C	T	8.024e^-5	0.968	INTERGENIC
2R	8230244	2R_8230244_SNP [dm3] 2R_12342739_SNP [dm6]	T	C	8.175e^-5	0.968	UPSTREAM CG8839 INTRON CG8839
3R	9390230	3R_9390230_SNP [dm3] 3R_13564508_SNP [dm6]	G	A	8.177e^-5	0.968	INTERGENIC
3R	26012069	3R_26012069_SNP [dm3] 3R_30186347_SNP [dm6]	G	T	8.229e^-5	0.968	INTRON CG9747	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4460951	2R_4460951_SNP [dm3] 2R_8573446_SNP [dm6]	G	A	8.232e^-5	0.968	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
2L	11681905	2L_11681905_SNP [dm3] 2L_11681905_SNP [dm6]	A	T	8.268e^-5	0.968	INTERGENIC
2L	5321431	2L_5321431_SNP [dm3] 2L_5321431_SNP [dm6]	T	C	8.271e^-5	0.968	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18276428	X_18276428_SNP [dm3] X_18382395_SNP [dm6]	G	A	8.272e^-5	0.968	SYNONYMOUS_CODING betaCOP DOWNSTREAM CG6179	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6339898	2R_6339898_SNP [dm3] 2R_10452393_SNP [dm6]	G	C	8.451e^-5	0.968	START_GAINED Cyp49a1 UTR_5_PRIME Cyp49a1 INTRON Galphao & 1 other
3R	20488366	3R_20488366_SNP [dm3] 3R_24662644_SNP [dm6]	T	A	8.504e^-5	0.968	UPSTREAM Ppox INTRON slo	regulatory region REDfly_CRMs
2R	12465362	2R_12465362_SNP [dm3] 2R_16577857_SNP [dm6]	G	C	8.589e^-5	0.968	INTERGENIC
3L	8358574	3L_8358574_SNP [dm3] 3L_8365474_SNP [dm6]	A	T	8.604e^-5	0.968	INTERGENIC
3R	3457239	3R_3457239_SNP [dm3] 3R_7631517_SNP [dm6]	G	C	8.693e^-5	0.968	INTRON CG34127
3L	9273899	3L_9273899_SNP [dm3] 3L_9280799_SNP [dm6]	A	G	8.740e^-5	0.968	INTRON GluRIB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9546610	2R_9546610_SNP [dm3] 2R_13659105_SNP [dm6]	A	C	8.779e^-5	0.968	INTRON fas
2R	10772787	2R_10772787_SNP [dm3] 2R_14885282_SNP [dm6]	A	G	8.801e^-5	0.968	UTR_3_PRIME Cyp6a21	TF binding site mE1_TFBS_cnc
3L	7006516	3L_7006516_SNP [dm3] 3L_7013416_SNP [dm6]	A	C	8.810e^-5	0.968	UPSTREAM Mp INTRON Mp	TF binding site mE1_TFBS_bab1
2L	14413032	2L_14413032_SNP [dm3] 2L_14413032_SNP [dm6]	C	T	8.842e^-5	0.968	INTERGENIC
2R	4273084	2R_4273084_SNP [dm3] 2R_8385579_SNP [dm6]	G	A	8.891e^-5	0.968	INTRON pdm3
3R	26010565	3R_26010565_SNP [dm3] 3R_30184843_SNP [dm6]	T	C	8.899e^-5	0.968	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
3R	20543190	3R_20543190_SNP [dm3] 3R_24717468_SNP [dm6]	G	T	8.905e^-5	0.968	UPSTREAM Rpb10 DOWNSTREAM CG13630 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6489031	2R_6489031_INS [dm3] 2R_10601526_INS [dm6]	T	GCA	9.031e^-5	0.968	INTRON psq	TF binding site BDTNP1_TFBS_dl
X	5243178	X_5243178_SNP [dm3] X_5349145_SNP [dm6]	C	T	9.033e^-5	0.968	INTRON SK
2L	16482191	2L_16482191_SNP [dm3] 2L_16482191_SNP [dm6]	C	G	9.084e^-5	0.968	INTRON dac	regulatory region REDfly_CRMs
3R	26010753	3R_26010753_SNP [dm3] 3R_30185031_SNP [dm6]	C	T	9.089e^-5	0.968	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
3R	9390229	3R_9390229_SNP [dm3] 3R_13564507_SNP [dm6]	T	C	9.106e^-5	0.968	INTERGENIC
3R	26009094	3R_26009094_SNP [dm3] 3R_30183372_SNP [dm6]	C	T	9.118e^-5	0.968	DOWNSTREAM CR44262 INTERGENIC
2R	18133485	2R_18133485_SNP [dm3] 2R_22245980_SNP [dm6]	A	G	9.149e^-5	0.968	INTRON dve
3L	17303747	3L_17303747_SNP [dm3] 3L_17310647_SNP [dm6]	G	A	9.203e^-5	0.968	INTERGENIC
3L	3775315	3L_3775315_SNP [dm3] 3L_3775315_SNP [dm6]	T	G	9.235e^-5	0.968	INTRON CG32264
2L	4045328	2L_4045328_SNP [dm3] 2L_4045328_SNP [dm6]	G	T	9.267e^-5	0.968	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4246660	2L_4246660_SNP [dm3] 2L_4246660_SNP [dm6]	T	G	9.277e^-5	0.968	EXON CR44059
2R	18595547	2R_18595547_SNP [dm3] 2R_22708042_SNP [dm6]	T	C	9.283e^-5	0.968	SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
3L	8828921	3L_8828921_SNP [dm3] 3L_8835821_SNP [dm6]	C	G	9.376e^-5	0.968	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
X	3003855	X_3003855_SNP [dm3] X_3109822_SNP [dm6]	A	G	9.433e^-5	0.968	INTRON kirre
3R	20254377	3R_20254377_SNP [dm3] 3R_24428655_SNP [dm6]	T	C	9.439e^-5	0.968	INTRON nAChRalpha1
2R	11402142	2R_11402142_SNP [dm3] 2R_15514637_SNP [dm6]	T	C	9.576e^-5	0.968	SYNONYMOUS_CODING GalNAc-T1
2R	3735259	2R_3735259_SNP [dm3] 2R_7847754_SNP [dm6]	C	A	9.598e^-5	0.968	UPSTREAM Dgk INTRON Dgk
2R	11409925	2R_11409925_SNP [dm3] 2R_15522420_SNP [dm6]	A	G	9.619e^-5	0.968	INTRON Khc-73
2L	12371813	2L_12371813_SNP [dm3] 2L_12371813_SNP [dm6]	A	G	9.621e^-5	0.968	INTRON bru-2
2L	11186214	2L_11186214_SNP [dm3] 2L_11186214_SNP [dm6]	A	G	9.652e^-5	0.968	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16695385	2L_16695385_SNP [dm3] 2L_16695385_SNP [dm6]	A	T	9.824e^-5	0.971	UPSTREAM grp INTRON grp
3L	9538041	3L_9538041_SNP [dm3] 3L_9544941_SNP [dm6]	C	A	9.929e^-5	0.971	UPSTREAM Ir67a INTERGENIC
3L	2254757	3L_2254757_SNP [dm3] 3L_2254757_SNP [dm6]	A	T	1.009e^-4	0.971	INTRON CG1275	TF binding site mE1_TFBS_cad
3R	7416712	3R_7416712_SNP [dm3] 3R_11590990_SNP [dm6]	T	G	1.010e^-4	0.971	UTR_3_PRIME Jupiter UPSTREAM CG6791
3R	20544983	3R_20544983_SNP [dm3] 3R_24719261_SNP [dm6]	T	G	1.013e^-4	0.971	SYNONYMOUS_CODING CG13630 UPSTREAM tok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	8284389	2L_8284389_SNP [dm3] 2L_8284389_SNP [dm6]	C	T	1.013e^-4	0.971	INTRON Btk29A	TF binding site mE1_TFBS_inv
3R	27473379	3R_27473379_SNP [dm3] 3R_31647657_SNP [dm6]	T	A	1.019e^-4	0.971	INTRON kek6
2R	17207460	2R_17207460_SNP [dm3] 2R_21319955_SNP [dm6]	G	T	1.025e^-4	0.971	SYNONYMOUS_CODING CG33655 DOWNSTREAM CG30394 & 1 other
3R	25707784	3R_25707784_SNP [dm3] 3R_29882062_SNP [dm6]	A	C	1.027e^-4	0.971	INTRON CG31038
3L	10628607	3L_10628607_SNP [dm3] 3L_10635507_SNP [dm6]	G	A	1.031e^-4	0.971	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	1646981	3L_1646981_SNP [dm3] 3L_1646981_SNP [dm6]	A	G	1.035e^-4	0.971	SYNONYMOUS_CODING CG17249 UPSTREAM Bro DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4202742	2L_4202742_SNP [dm3] 2L_4202742_SNP [dm6]	T	C	1.039e^-4	0.971	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2R	14189418	2R_14189418_SNP [dm3] 2R_18301913_SNP [dm6]	C	T	1.041e^-4	0.971	INTRON sbb
2R	10792442	2R_10792442_SNP [dm3] 2R_14904937_SNP [dm6]	A	G	1.047e^-4	0.971	NON_SYNONYMOUS_CODING CG10249	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12071134	3L_12071134_SNP [dm3] 3L_12078034_SNP [dm6]	T	A	1.054e^-4	0.971	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6489078	2R_6489078_SNP [dm3] 2R_10601573_SNP [dm6]	A	C	1.068e^-4	0.971	INTRON psq
2R	11804108	2R_11804108_SNP [dm3] 2R_15916603_SNP [dm6]	G	T	1.068e^-4	0.971	INTRON sli EXON CR44373
2R	12797375	2R_12797375_SNP [dm3] 2R_16909870_SNP [dm6]	T	C	1.068e^-4	0.971	INTERGENIC
2R	4460569	2R_4460569_SNP [dm3] 2R_8573064_SNP [dm6]	C	T	1.082e^-4	0.971	DOWNSTREAM Cyp6a13 & 1 other INTERGENIC
2R	13093318	2R_13093318_SNP [dm3] 2R_17205813_SNP [dm6]	T	G	1.082e^-4	0.971	DOWNSTREAM CG43237 INTERGENIC
2L	4262613	2L_4262613_DEL [dm3] 2L_4262613_DEL [dm6]	TGCAGCGAGACATGAT...	T	1.086e^-4	0.971	INTERGENIC
2L	14413024	2L_14413024_SNP [dm3] 2L_14413024_SNP [dm6]	T	G	1.095e^-4	0.971	INTERGENIC
2L	7567919	2L_7567919_SNP [dm3] 2L_7567919_SNP [dm6]	A	G	1.099e^-4	0.971	INTRON RapGAP1
2R	18795738	2R_18795738_SNP [dm3] 2R_22908215_SNP [dm6]	C	T	1.111e^-4	0.971	INTRON nahoda	TF binding site mE1_TFBS_chinmo
2L	4278264	2L_4278264_SNP [dm3] 2L_4278264_SNP [dm6]	T	C	1.111e^-4	0.971	SYNONYMOUS_CODING Art2
3R	20254325	3R_20254325_SNP [dm3] 3R_24428603_SNP [dm6]	T	C	1.116e^-4	0.971	INTRON nAChRalpha1
3L	12071126	3L_12071126_SNP [dm3] 3L_12078026_SNP [dm6]	T	C	1.116e^-4	0.971	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4239177	2L_4239177_SNP [dm3] 2L_4239177_SNP [dm6]	C	A	1.125e^-4	0.971	DOWNSTREAM CR45720 INTERGENIC
2L	9708488	2L_9708488_SNP [dm3] 2L_9708488_SNP [dm6]	T	G	1.126e^-4	0.971	UTR_3_PRIME pelo DOWNSTREAM CG4364	TF binding site mE1_TFBS_HSA
2L	9286970	2L_9286970_SNP [dm3] 2L_9286970_SNP [dm6]	A	C	1.133e^-4	0.971	INTRON Ggamma30A
3R	6466005	3R_6466005_INS [dm3] 3R_10640283_INS [dm6]	T	TGCTCATCTAT...	1.141e^-4	0.971	UPSTREAM hth EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26009168	3R_26009168_SNP [dm3] 3R_30183446_SNP [dm6]	T	C	1.142e^-4	0.971	DOWNSTREAM CR44262 INTERGENIC
3L	16298538	3L_16298538_SNP [dm3] 3L_16305438_SNP [dm6]	T	G	1.145e^-4	0.971	SYNONYMOUS_CODING CG13043 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8158820	2L_8158820_SNP [dm3] 2L_8158820_SNP [dm6]	G	C	1.152e^-4	0.971	DOWNSTREAM CG43394 INTRON CG8552
X	18889512	X_18889512_SNP [dm3] X_18995479_SNP [dm6]	G	A	1.154e^-4	0.971	INTRON CG43759
2L	4307532	2L_4307532_SNP [dm3] 2L_4307532_SNP [dm6]	A	C	1.156e^-4	0.971	INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10411399	2L_10411399_SNP [dm3] 2L_10411399_SNP [dm6]	T	C	1.163e^-4	0.971	DOWNSTREAM RpS27A INTRON CG5355	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14412895	2L_14412895_SNP [dm3] 2L_14412895_SNP [dm6]	A	T	1.177e^-4	0.971	INTERGENIC
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	1.178e^-4	0.971	UPSTREAM CR43970 INTRON Tsp66E
2R	6489113	2R_6489113_SNP [dm3] 2R_10601608_SNP [dm6]	T	C	1.181e^-4	0.971	INTRON psq
2R	3735279	2R_3735279_SNP [dm3] 2R_7847774_SNP [dm6]	T	C	1.183e^-4	0.971	UPSTREAM Dgk INTRON Dgk
2L	5320942	2L_5320942_SNP [dm3] 2L_5320942_SNP [dm6]	C	T	1.186e^-4	0.971	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10146189	3L_10146189_SNP [dm3] 3L_10153089_SNP [dm6]	T	G	1.216e^-4	0.989	DOWNSTREAM CG8072 INTRON dpr10
2R	3735262	2R_3735262_SNP [dm3] 2R_7847757_SNP [dm6]	A	G	1.221e^-4	0.989	UPSTREAM Dgk INTRON Dgk
2R	18641259	2R_18641259_SNP [dm3] 2R_22753754_SNP [dm6]	A	G	1.231e^-4	0.989	INTRON CG42260	TF binding site mE1_TFBS_chinmo
3R	7829915	3R_7829915_SNP [dm3] 3R_12004193_SNP [dm6]	C	T	1.249e^-4	0.989	DOWNSTREAM Ect3 INTRON Tk
3R	27466914	3R_27466914_SNP [dm3] 3R_31641192_SNP [dm6]	T	C	1.264e^-4	0.989	INTRON kek6
2L	7451494	2L_7451494_SNP [dm3] 2L_7451494_SNP [dm6]	T	G	1.271e^-4	0.989	UPSTREAM santa-maria INTERGENIC
2R	6489073	2R_6489073_SNP [dm3] 2R_10601568_SNP [dm6]	A	C	1.273e^-4	0.989	INTRON psq
2R	10997709	2R_10997709_SNP [dm3] 2R_15110204_SNP [dm6]	T	C	1.277e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6489026	2R_6489026_SNP [dm3] 2R_10601521_SNP [dm6]	G	T	1.293e^-4	0.989	INTRON psq	TF binding site BDTNP1_TFBS_dl
2R	13419336	2R_13419336_SNP [dm3] 2R_17531831_SNP [dm6]	T	A	1.294e^-4	0.989	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7017799	2L_7017799_SNP [dm3] 2L_7017799_SNP [dm6]	G	C	1.298e^-4	0.989	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
3R	5380284	3R_5380284_SNP [dm3] 3R_9554562_SNP [dm6]	C	A	1.303e^-4	0.989	NON_SYNONYMOUS_CODING CG9386 DOWNSTREAM RnpS1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8387891	2R_8387891_SNP [dm3] 2R_12500386_SNP [dm6]	T	C	1.306e^-4	0.989	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26004648	3R_26004648_SNP [dm3] 3R_30178926_SNP [dm6]	G	A	1.307e^-4	0.989	SYNONYMOUS_CODING CG15530	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10659377	3L_10659377_SNP [dm3] 3L_10666277_SNP [dm6]	G	T	1.313e^-4	0.989	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13392391	2R_13392391_SNP [dm3] 2R_17504886_SNP [dm6]	T	C	1.315e^-4	0.989	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens
X	21508581	X_21508581_SNP [dm3] X_21637554_SNP [dm6]	C	A	1.320e^-4	0.989	INTERGENIC	transposable element FlyBase
2R	3735394	2R_3735394_SNP [dm3] 2R_7847889_SNP [dm6]	C	T	1.327e^-4	0.989	UPSTREAM Dgk INTRON Dgk
2R	9696420	2R_9696420_SNP [dm3] 2R_13808915_SNP [dm6]	G	C	1.329e^-4	0.989	INTRON stj
2L	10127754	2L_10127754_SNP [dm3] 2L_10127754_SNP [dm6]	A	T	1.332e^-4	0.989	INTRON CG44153
X	2755272	X_2755272_SNP [dm3] X_2861239_SNP [dm6]	C	T	1.356e^-4	0.989	INTRON kirre
2R	17635468	2R_17635468_SNP [dm3] 2R_21747963_SNP [dm6]	G	A	1.366e^-4	0.989	INTERGENIC
3L	875259	3L_875259_SNP [dm3] 3L_875259_SNP [dm6]	A	G	1.387e^-4	0.989	INTRON CG32479	TF binding site mE1_TFBS_cad
2L	16965385	2L_16965385_SNP [dm3] 2L_16965385_SNP [dm6]	A	G	1.397e^-4	0.989	UPSTREAM CR45285 INTERGENIC
X	3828507	X_3828507_SNP [dm3] X_3934474_SNP [dm6]	G	A	1.399e^-4	0.989	SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4949021	3L_4949021_SNP [dm3] 3L_4949021_SNP [dm6]	T	C	1.400e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16491206	2L_16491206_SNP [dm3] 2L_16491206_SNP [dm6]	A	C	1.409e^-4	0.989	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	8527576	3R_8527576_SNP [dm3] 3R_12701854_SNP [dm6]	T	C	1.410e^-4	0.989	INTRON Past1	TF binding site mE1_TFBS_HSA
3L	16737060	3L_16737060_SNP [dm3] 3L_16743960_SNP [dm6]	T	G	1.410e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5885831	3L_5885831_INS [dm3] 3L_5892731_INS [dm6]	T	AGGATCC	1.412e^-4	0.989	INTERGENIC
X	16007349	X_16007349_SNP [dm3] X_16113316_SNP [dm6]	T	C	1.419e^-4	0.989	INTERGENIC
3L	976564	3L_976564_SNP [dm3] 3L_976564_SNP [dm6]	T	G	1.444e^-4	0.989	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16965382	2L_16965382_SNP [dm3] 2L_16965382_SNP [dm6]	C	T	1.446e^-4	0.989	UPSTREAM CR45285 INTERGENIC
X	5662148	X_5662148_SNP [dm3] X_5768115_SNP [dm6]	C	T	1.459e^-4	0.989	INTRON CG42699 & 1 other
X	875065	X_875065_SNP [dm3] X_981032_SNP [dm6]	G	T	1.464e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8021017	X_8021017_SNP [dm3] X_8126984_SNP [dm6]	T	A	1.471e^-4	0.989	SPLICE_SITE_REGION cyr INTRON cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	2852723	3R_2852723_SNP [dm3] 3R_7027001_SNP [dm6]	G	A	1.483e^-4	0.989	INTERGENIC
3R	19560557	3R_19560557_INS [dm3] 3R_23734835_INS [dm6]	A	AA	1.487e^-4	0.989	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8437837	X_8437837_DEL [dm3] X_8543804_DEL [dm6]	CC	C	1.491e^-4	0.989	INTRON Nrg
2R	16915100	2R_16915100_SNP [dm3] 2R_21027595_SNP [dm6]	G	T	1.495e^-4	0.989	INTERGENIC
2L	1954953	2L_1954953_SNP [dm3] 2L_1954953_SNP [dm6]	A	G	1.495e^-4	0.989	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16896596	3L_16896596_SNP [dm3] 3L_16903496_SNP [dm6]	T	C	1.511e^-4	0.989	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	15121995	3L_15121995_SNP [dm3] 3L_15128895_SNP [dm6]	T	C	1.515e^-4	0.989	NON_SYNONYMOUS_CODING CG13457 DOWNSTREAM Cep135
X	8021040	X_8021040_SNP [dm3] X_8127007_SNP [dm6]	T	A	1.516e^-4	0.989	INTRON cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	10817209	2R_10817209_SNP [dm3] 2R_14929704_SNP [dm6]	T	A	1.522e^-4	0.989	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
2R	11983762	2R_11983762_SNP [dm3] 2R_16096257_SNP [dm6]	C	T	1.525e^-4	0.989	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16918647	2R_16918647_SNP [dm3] 2R_21031142_SNP [dm6]	A	G	1.531e^-4	0.989	INTERGENIC
2R	16080708	2R_16080708_SNP [dm3] 2R_20193203_SNP [dm6]	A	G	1.537e^-4	0.989	INTERGENIC
3R	25675364	3R_25675364_SNP [dm3] 3R_29849642_SNP [dm6]	G	A	1.541e^-4	0.989	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
3L	2181159	3L_2181159_SNP [dm3] 3L_2181159_SNP [dm6]	G	T	1.548e^-4	0.989	INTERGENIC
X	384833	X_384833_SNP [dm3] X_490800_SNP [dm6]	G	A	1.549e^-4	0.989	UTR_3_PRIME CG17896 DOWNSTREAM CG3156
2R	19242686	2R_19242686_SNP [dm3] 2R_23355163_SNP [dm6]	C	T	1.557e^-4	0.989	UTR_3_PRIME CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4719377	X_4719377_SNP [dm3] X_4825344_SNP [dm6]	T	C	1.565e^-4	0.989	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7416641	3R_7416641_SNP [dm3] 3R_11590919_SNP [dm6]	C	T	1.566e^-4	0.989	UTR_3_PRIME Jupiter UPSTREAM CG6791
3L	5885851	3L_5885851_SNP [dm3] 3L_5892751_SNP [dm6]	T	C	1.566e^-4	0.989	INTERGENIC
3L	6816891	3L_6816891_SNP [dm3] 3L_6823791_SNP [dm6]	A	G	1.567e^-4	0.989	INTERGENIC
3R	25295309	3R_25295309_DEL [dm3] 3R_29469587_DEL [dm6]	GGCATATCAAAG...	G	1.575e^-4	0.989	INTRON Ptp99A
X	17150165	X_17150165_SNP [dm3] X_17256132_SNP [dm6]	C	A	1.579e^-4	0.989	INTRON f
2L	10000435	2L_10000435_SNP [dm3] 2L_10000435_SNP [dm6]	T	G	1.596e^-4	0.989	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000474	2L_10000474_SNP [dm3] 2L_10000474_SNP [dm6]	G	C	1.596e^-4	0.989	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	10000487	2L_10000487_SNP [dm3] 2L_10000487_SNP [dm6]	C	T	1.596e^-4	0.989	SYNONYMOUS_CODING SoYb INTRON CG31875
2R	10771854	2R_10771854_INS [dm3] 2R_14884349_INS [dm6]	T	TGTAT	1.598e^-4	0.989	DOWNSTREAM Cyp6a20 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2270085	3L_2270085_SNP [dm3] 3L_2270085_SNP [dm6]	C	T	1.601e^-4	0.989	SYNONYMOUS_CODING yellow-g DOWNSTREAM CG32302	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	10795342	3L_10795342_SNP [dm3] 3L_10802242_SNP [dm6]	C	T	1.603e^-4	0.989	UTR_3_PRIME CG12523 DOWNSTREAM CG12523
2L	16695384	2L_16695384_SNP [dm3] 2L_16695384_SNP [dm6]	A	C	1.604e^-4	0.989	UPSTREAM grp INTRON grp
3L	8215532	3L_8215532_SNP [dm3] 3L_8222432_SNP [dm6]	C	A	1.606e^-4	0.989	INTRON CG13678	TF binding site mE1_TFBS_cad
2L	12705853	2L_12705853_SNP [dm3] 2L_12705853_SNP [dm6]	G	A	1.611e^-4	0.989	SYNONYMOUS_CODING spict DOWNSTREAM CG15484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16481074	2L_16481074_SNP [dm3] 2L_16481074_SNP [dm6]	G	A	1.624e^-4	0.989	INTRON dac
2L	11891103	2L_11891103_SNP [dm3] 2L_11891103_SNP [dm6]	C	G	1.638e^-4	0.989	INTRON Pde1c
3R	26008027	3R_26008027_SNP [dm3] 3R_30182305_SNP [dm6]	C	T	1.640e^-4	0.989	DOWNSTREAM Bet5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15951820	3L_15951820_SNP [dm3] 3L_15958720_SNP [dm6]	C	A	1.641e^-4	0.989	UPSTREAM CG17032 DOWNSTREAM elgi INTERGENIC
2L	10000465	2L_10000465_SNP [dm3] 2L_10000465_SNP [dm6]	C	T	1.641e^-4	0.989	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2L	4124596	2L_4124596_SNP [dm3] 2L_4124596_SNP [dm6]	T	C	1.642e^-4	0.989	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	25673524	3R_25673524_DEL [dm3] 3R_29847802_DEL [dm6]	TGG	C	1.661e^-4	0.989	INTRON Cad99C
2R	6974167	2R_6974167_SNP [dm3] 2R_11086662_SNP [dm6]	C	T	1.667e^-4	0.989	UTR_5_PRIME CG43189 INTRON luna & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3R	25672654	3R_25672654_SNP [dm3] 3R_29846932_SNP [dm6]	T	C	1.669e^-4	0.989	INTRON Cad99C
2R	15824248	2R_15824248_SNP [dm3] 2R_19936743_SNP [dm6]	G	A	1.670e^-4	0.989	INTERGENIC
3L	8358530	3L_8358530_SNP [dm3] 3L_8365430_SNP [dm6]	C	T	1.686e^-4	0.989	INTERGENIC
X	4374425	X_4374425_SNP [dm3] X_4480392_SNP [dm6]	G	A	1.692e^-4	0.989	INTRON CR32773 & 1 other
2L	9366688	2L_9366688_SNP [dm3] 2L_9366688_SNP [dm6]	C	T	1.713e^-4	0.989	UPSTREAM CG34181 INTERGENIC
X	17150176	X_17150176_SNP [dm3] X_17256143_SNP [dm6]	G	A	1.716e^-4	0.989	INTRON f
2L	10000453	2L_10000453_SNP [dm3] 2L_10000453_SNP [dm6]	C	T	1.722e^-4	0.989	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2R	9693549	2R_9693549_SNP [dm3] 2R_13806044_SNP [dm6]	A	C	1.734e^-4	0.989	UTR_5_PRIME stj UPSTREAM stj DOWNSTREAM Cpr50Cb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7720263	2R_7720263_SNP [dm3] 2R_11832758_SNP [dm6]	T	C	1.741e^-4	0.989	INTRON Sobp
2R	2999463	2R_2999463_SNP [dm3] 2R_7111958_SNP [dm6]	A	G	1.747e^-4	0.989	INTRON esn	TF binding site mE1_TFBS_inv
3R	9397568	3R_9397568_SNP [dm3] 3R_13571846_SNP [dm6]	G	A	1.755e^-4	0.989	INTERGENIC
2L	3017426	2L_3017426_SNP [dm3] 2L_3017426_SNP [dm6]	G	T	1.756e^-4	0.989	NON_SYNONYMOUS_CODING CG17224	TF binding site mE1_TFBS_chinmo
2L	8158776	2L_8158776_SNP [dm3] 2L_8158776_SNP [dm6]	A	G	1.763e^-4	0.989	UTR_3_PRIME CG43394 INTRON CG8552
2L	4307533	2L_4307533_SNP [dm3] 2L_4307533_SNP [dm6]	T	C	1.764e^-4	0.989	INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16480873	X_16480873_SNP [dm3] X_16586840_SNP [dm6]	G	A	1.769e^-4	0.989	UPSTREAM CanA-14F INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8159377	2L_8159377_SNP [dm3] 2L_8159377_SNP [dm6]	T	G	1.773e^-4	0.989	NON_SYNONYMOUS_CODING CG8552 UPSTREAM Rbsn-5 DOWNSTREAM CG43394
2R	10772786	2R_10772786_SNP [dm3] 2R_14885281_SNP [dm6]	A	G	1.781e^-4	0.989	UTR_3_PRIME Cyp6a21	TF binding site mE1_TFBS_cnc
2R	18871361	2R_18871361_SNP [dm3] 2R_22983838_SNP [dm6]	G	A	1.784e^-4	0.989	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11823798	2R_11823798_SNP [dm3] 2R_15936293_SNP [dm6]	A	G	1.796e^-4	0.989	UTR_3_PRIME Mlf DOWNSTREAM Mlf & 1 other	TF binding site mE1_TFBS_HSA
3L	10814240	3L_10814240_SNP [dm3] 3L_10821140_SNP [dm6]	G	A	1.799e^-4	0.989	INTERGENIC
3R	9393442	3R_9393442_SNP [dm3] 3R_13567720_SNP [dm6]	T	A	1.820e^-4	0.989	INTERGENIC
X	13715064	X_13715064_SNP [dm3] X_13821031_SNP [dm6]	T	C	1.825e^-4	0.989	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15335935	3R_15335935_SNP [dm3] 3R_19510213_SNP [dm6]	T	G	1.828e^-4	0.989	INTRON Dys
3L	12562016	3L_12562016_SNP [dm3] 3L_12568916_SNP [dm6]	C	T	1.828e^-4	0.989	INTRON sowah	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12261227	2R_12261227_DEL [dm3] 2R_16373722_DEL [dm6]	CAGCTAAC	C	1.829e^-4	0.989	INTERGENIC
2R	20250563	2R_20250563_SNP [dm3] 2R_24363040_SNP [dm6]	T	C	1.831e^-4	0.989	INTRON bs & 1 other	TF binding site mE1_TFBS_chinmo
2L	9011576	2L_9011576_SNP [dm3] 2L_9011576_SNP [dm6]	A	G	1.832e^-4	0.989	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3R	14678423	3R_14678423_SNP [dm3] 3R_18852701_SNP [dm6]	A	T	1.835e^-4	0.989	UPSTREAM CG31226 INTERGENIC
3R	20254361	3R_20254361_DEL [dm3] 3R_24428639_DEL [dm6]	TGTATGT	T	1.857e^-4	0.989	INTRON nAChRalpha1
3R	20487956	3R_20487956_SNP [dm3] 3R_24662234_SNP [dm6]	T	G	1.861e^-4	0.989	UPSTREAM slo & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	11901981	2L_11901981_SNP [dm3] 2L_11901981_SNP [dm6]	G	A	1.862e^-4	0.989	INTRON Pde1c
2L	9286962	2L_9286962_SNP [dm3] 2L_9286962_SNP [dm6]	G	T	1.866e^-4	0.989	INTRON Ggamma30A
2R	7720278	2R_7720278_SNP [dm3] 2R_11832773_SNP [dm6]	A	G	1.867e^-4	0.989	INTRON Sobp
2R	17133455	2R_17133455_SNP [dm3] 2R_21245950_SNP [dm6]	A	G	1.869e^-4	0.989	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	9694933	2L_9694933_SNP [dm3] 2L_9694933_SNP [dm6]	T	C	1.874e^-4	0.989	INTRON Pka-C1
X	909683	X_909683_SNP [dm3] X_1015650_SNP [dm6]	C	A	1.878e^-4	0.989	SYNONYMOUS_CODING CG11638 INTRON su_w[a]_
2L	2440307	2L_2440307_SNP [dm3] 2L_2440307_SNP [dm6]	C	T	1.884e^-4	0.989	INTRON dpp	regulatory region REDfly_CRMs
3L	12071077	3L_12071077_SNP [dm3] 3L_12077977_SNP [dm6]	G	T	1.889e^-4	0.989	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1647113	3L_1647113_SNP [dm3] 3L_1647113_SNP [dm6]	C	T	1.896e^-4	0.989	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15401811	2R_15401811_SNP [dm3] 2R_19514306_SNP [dm6]	C	T	1.901e^-4	0.989	UPSTREAM Ir56d INTERGENIC
3R	26008104	3R_26008104_SNP [dm3] 3R_30182382_SNP [dm6]	T	C	1.906e^-4	0.989	DOWNSTREAM Bet5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25949687	3R_25949687_SNP [dm3] 3R_30123965_SNP [dm6]	C	A	1.908e^-4	0.989	NON_SYNONYMOUS_CODING CG45073 UPSTREAM CG45072
3L	16298292	3L_16298292_SNP [dm3] 3L_16305192_SNP [dm6]	C	T	1.910e^-4	0.989	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	4462854	X_4462854_SNP [dm3] X_4568821_SNP [dm6]	T	G	1.911e^-4	0.989	INTRON CR32773
X	7199131	X_7199131_INS [dm3] X_7305098_INS [dm6]	T	TGTGTGT	1.912e^-4	0.989	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	13384851	2R_13384851_SNP [dm3] 2R_17497346_SNP [dm6]	C	T	1.920e^-4	0.989	INTERGENIC
3R	26663390	3R_26663390_SNP [dm3] 3R_30837668_SNP [dm6]	A	T	1.929e^-4	0.989	INTRON CG15544
2R	16920154	2R_16920154_SNP [dm3] 2R_21032649_SNP [dm6]	T	G	1.941e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16917991	2R_16917991_SNP [dm3] 2R_21030486_SNP [dm6]	G	T	1.947e^-4	0.989	UPSTREAM CR45148 INTERGENIC
3R	21394939	3R_21394939_SNP [dm3] 3R_25569217_SNP [dm6]	G	A	1.954e^-4	0.989	INTRON msi
3L	4025340	3L_4025340_SNP [dm3] 3L_4025340_SNP [dm6]	G	T	1.957e^-4	0.989	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
3L	7570730	3L_7570730_SNP [dm3] 3L_7577630_SNP [dm6]	T	C	1.986e^-4	0.989	INTERGENIC
2L	11681942	2L_11681942_SNP [dm3] 2L_11681942_SNP [dm6]	A	G	1.987e^-4	0.989	INTERGENIC
2L	9158848	2L_9158848_SNP [dm3] 2L_9158848_SNP [dm6]	T	A	1.988e^-4	0.989	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	9345273	3L_9345273_SNP [dm3] 3L_9352173_SNP [dm6]	A	T	1.994e^-4	0.989	SYNONYMOUS_CODING UGP DOWNSTREAM PGRP-LF
2L	11681944	2L_11681944_SNP [dm3] 2L_11681944_SNP [dm6]	C	T	2.004e^-4	0.989	INTERGENIC
3L	7539531	3L_7539531_SNP [dm3] 3L_7546431_SNP [dm6]	A	G	2.014e^-4	0.989	INTERGENIC
3L	1639404	3L_1639404_SNP [dm3] 3L_1639404_SNP [dm6]	G	A	2.016e^-4	0.989	UPSTREAM Bgb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	16918170	2R_16918170_SNP [dm3] 2R_21030665_SNP [dm6]	G	T	2.020e^-4	0.989	UPSTREAM CR45148 INTERGENIC
X	19941419	X_19941419_INS [dm3] X_20047386_INS [dm6]	C	CACCAACATC	2.023e^-4	0.989	INTRON Dop2R
3L	17802354	3L_17802354_INS [dm3] 3L_17809254_INS [dm6]	T	TAT	2.025e^-4	0.989	UTR_3_PRIME cln3 UPSTREAM CG32191
X	5580393	X_5580393_SNP [dm3] X_5686360_SNP [dm6]	A	G	2.026e^-4	0.989	NON_SYNONYMOUS_CODING CG3160
3L	16745327	3L_16745327_SNP [dm3] 3L_16752227_SNP [dm6]	T	C	2.037e^-4	0.989	INTERGENIC
2L	6279665	2L_6279665_SNP [dm3] 2L_6279665_SNP [dm6]	C	G	2.038e^-4	0.989	INTRON Ddr
X	18889625	X_18889625_SNP [dm3] X_18995592_SNP [dm6]	T	C	2.043e^-4	0.989	INTRON CG43759
3R	25670653	3R_25670653_SNP [dm3] 3R_29844931_SNP [dm6]	A	G	2.045e^-4	0.989	INTRON Cad99C
3R	21487713	3R_21487713_SNP [dm3] 3R_25661991_SNP [dm6]	C	A	2.046e^-4	0.989	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	18890885	X_18890885_SNP [dm3] X_18996852_SNP [dm6]	C	A	2.052e^-4	0.989	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26008850	3R_26008850_SNP [dm3] 3R_30183128_SNP [dm6]	G	T	2.056e^-4	0.989	DOWNSTREAM CR44262 INTERGENIC
2L	8237559	2L_8237559_SNP [dm3] 2L_8237559_SNP [dm6]	C	T	2.061e^-4	0.989	INTRON Pvr
3L	8314140	3L_8314140_SNP [dm3] 3L_8321040_SNP [dm6]	G	A	2.066e^-4	0.989	NON_SYNONYMOUS_CODING CG13670	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6214872	X_6214872_SNP [dm3] X_6320839_SNP [dm6]	A	C	2.067e^-4	0.989	SYNONYMOUS_CODING CG15894
3L	2893147	3L_2893147_SNP [dm3] 3L_2893147_SNP [dm6]	A	G	2.069e^-4	0.989	UPSTREAM spz5 INTERGENIC
2L	14200067	2L_14200067_SNP [dm3] 2L_14200067_SNP [dm6]	C	T	2.075e^-4	0.989	INTRON Dyrk2
3L	8741971	3L_8741971_SNP [dm3] 3L_8748871_SNP [dm6]	T	C	2.077e^-4	0.989	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8306020	2R_8306020_INS [dm3] 2R_12418515_INS [dm6]	A	CTCTCGATCTCTTGGCCTCT...	2.081e^-4	0.989	DOWNSTREAM CG42782 & 1 other INTERGENIC
3R	26009157	3R_26009157_SNP [dm3] 3R_30183435_SNP [dm6]	A	T	2.083e^-4	0.989	DOWNSTREAM CR44262 INTERGENIC
2R	3735276	2R_3735276_SNP [dm3] 2R_7847771_SNP [dm6]	C	T	2.088e^-4	0.989	UPSTREAM Dgk INTRON Dgk
3L	4949069	3L_4949069_SNP [dm3] 3L_4949069_SNP [dm6]	T	G	2.095e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17662160	3R_17662160_SNP [dm3] 3R_21836438_SNP [dm6]	G	T	2.098e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7280516	X_7280516_SNP [dm3] X_7386483_SNP [dm6]	G	A	2.098e^-4	0.989	INTRON CG1677 & 1 other
2L	8885412	2L_8885412_INS [dm3] 2L_8885412_INS [dm6]	G	GG	2.101e^-4	0.989	INTERGENIC
3R	26676466	3R_26676466_SNP [dm3] 3R_30850744_SNP [dm6]	G	A	2.113e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18250821	3L_18250821_SNP [dm3] 3L_18257721_SNP [dm6]	T	A	2.117e^-4	0.989	INTERGENIC
3L	21808657	3L_21808657_DEL [dm3] 3L_21815557_DEL [dm6]	AAAACAA	A	2.121e^-4	0.989	INTRON eg
2L	8985119	2L_8985119_SNP [dm3] 2L_8985119_SNP [dm6]	G	T	2.124e^-4	0.989	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16804853	2L_16804853_SNP [dm3] 2L_16804853_SNP [dm6]	A	G	2.153e^-4	0.989	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	596666	2L_596666_SNP [dm3] 2L_596666_SNP [dm6]	C	A	2.157e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	17150153	X_17150153_SNP [dm3] X_17256120_SNP [dm6]	T	A	2.158e^-4	0.989	INTRON f
2L	8985147	2L_8985147_SNP [dm3] 2L_8985147_SNP [dm6]	C	T	2.177e^-4	0.989	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7568008	2L_7568008_SNP [dm3] 2L_7568008_SNP [dm6]	T	C	2.179e^-4	0.989	INTRON RapGAP1
3R	9390333	3R_9390333_SNP [dm3] 3R_13564611_SNP [dm6]	T	C	2.185e^-4	0.989	INTERGENIC
2R	17625256	2R_17625256_SNP [dm3] 2R_21737751_SNP [dm6]	G	A	2.186e^-4	0.989	INTERGENIC
3L	14603777	3L_14603777_SNP [dm3] 3L_14610677_SNP [dm6]	A	C	2.191e^-4	0.989	INTERGENIC
2R	11688929	2R_11688929_SNP [dm3] 2R_15801424_SNP [dm6]	C	G	2.208e^-4	0.989	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	3183045	3L_3183045_SNP [dm3] 3L_3183045_SNP [dm6]	T	G	2.212e^-4	0.989	SYNONYMOUS_CODING Girdin
2R	7003480	2R_7003480_SNP [dm3] 2R_11115975_SNP [dm6]	A	G	2.213e^-4	0.989	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23392676	3R_23392676_SNP [dm3] 3R_27566954_SNP [dm6]	T	C	2.219e^-4	0.989	SYNONYMOUS_CODING wdb
2R	16916682	2R_16916682_SNP [dm3] 2R_21029177_SNP [dm6]	T	A	2.225e^-4	0.989	DOWNSTREAM CR45148 INTERGENIC
3L	3792223	3L_3792223_SNP [dm3] 3L_3792223_SNP [dm6]	C	T	2.232e^-4	0.989	DOWNSTREAM CG32266 INTRON CG32264
2L	17500680	2L_17500680_SNP [dm3] 2L_17500680_SNP [dm6]	A	T	2.243e^-4	0.989	UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9511785	3L_9511785_INS [dm3] 3L_9518685_INS [dm6]	T	TT	2.246e^-4	0.989	INTRON CG33700
3R	7615198	3R_7615198_SNP [dm3] 3R_11789476_SNP [dm6]	C	T	2.251e^-4	0.989	UTR_3_PRIME Sbf DOWNSTREAM HisCl1
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	2.252e^-4	0.989	INTRON CG9747
2R	7067368	2R_7067368_SNP [dm3] 2R_11179863_SNP [dm6]	A	G	2.256e^-4	0.989	INTRON shn
2R	6489153	2R_6489153_SNP [dm3] 2R_10601648_SNP [dm6]	G	C	2.256e^-4	0.989	INTRON psq
2R	11983647	2R_11983647_SNP [dm3] 2R_16096142_SNP [dm6]	T	C	2.256e^-4	0.989	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8385389	3L_8385389_SNP [dm3] 3L_8392289_SNP [dm6]	G	A	2.266e^-4	0.989	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5038935	3R_5038935_SNP [dm3] 3R_9213213_SNP [dm6]	T	C	2.282e^-4	0.989	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12286235	X_12286235_SNP [dm3] X_12392202_SNP [dm6]	T	C	2.291e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8741998	3L_8741998_SNP [dm3] 3L_8748898_SNP [dm6]	A	G	2.293e^-4	0.989	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	13230835	3L_13230835_SNP [dm3] 3L_13237735_SNP [dm6]	T	A	2.294e^-4	0.989	INTRON caps	TF binding site mE1_TFBS_HSA
2L	6650770	2L_6650770_SNP [dm3] 2L_6650770_SNP [dm6]	G	A	2.310e^-4	0.989	NON_SYNONYMOUS_CODING Tango1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	17196009	2L_17196009_INS [dm3] 2L_17196009_INS [dm6]	T	TGT	2.311e^-4	0.989	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
X	16947287	X_16947287_SNP [dm3] X_17053254_SNP [dm6]	C	T	2.312e^-4	0.989	INTRON CG45002
2R	11823791	2R_11823791_SNP [dm3] 2R_15936286_SNP [dm6]	G	C	2.314e^-4	0.989	UTR_3_PRIME Mlf DOWNSTREAM Mlf & 1 other
2L	12706783	2L_12706783_SNP [dm3] 2L_12706783_SNP [dm6]	G	C	2.316e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
X	3484716	X_3484716_SNP [dm3] X_3590683_SNP [dm6]	C	G	2.316e^-4	0.989	INTRON AstA-R1
2R	11405239	2R_11405239_SNP [dm3] 2R_15517734_SNP [dm6]	T	A	2.322e^-4	0.989	UTR_3_PRIME Khc-73
3R	11892566	3R_11892566_SNP [dm3] 3R_16066844_SNP [dm6]	A	T	2.327e^-4	0.989	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15147104	2L_15147104_SNP [dm3] 2L_15147104_SNP [dm6]	A	C	2.327e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9693230	2R_9693230_SNP [dm3] 2R_13805725_SNP [dm6]	T	G	2.327e^-4	0.989	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8918127	2R_8918127_SNP [dm3] 2R_13030622_SNP [dm6]	A	G	2.338e^-4	0.989	INTERGENIC
2L	1451468	2L_1451468_SNP [dm3] 2L_1451468_SNP [dm6]	T	G	2.341e^-4	0.989	INTERGENIC
3L	7005438	3L_7005438_SNP [dm3] 3L_7012338_SNP [dm6]	C	A	2.347e^-4	0.989	INTRON Mp	TF binding site mE1_TFBS_bab1
2R	9569196	2R_9569196_SNP [dm3] 2R_13681691_SNP [dm6]	C	G	2.350e^-4	0.989	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6727409	X_6727409_SNP [dm3] X_6833376_SNP [dm6]	T	A	2.351e^-4	0.989	UPSTREAM CG12796 INTRON nonC
2L	10127752	2L_10127752_SNP [dm3] 2L_10127752_SNP [dm6]	A	G	2.357e^-4	0.989	INTRON CG44153
2L	17605823	2L_17605823_SNP [dm3] 2L_17605823_SNP [dm6]	C	A	2.358e^-4	0.989	DOWNSTREAM CR44412 INTERGENIC
3L	10624513	3L_10624513_SNP [dm3] 3L_10631413_SNP [dm6]	A	G	2.359e^-4	0.989	SYNONYMOUS_CODING hay UPSTREAM CG42535 INTRON CG34001	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
3R	18835676	3R_18835676_SNP [dm3] 3R_23009954_SNP [dm6]	G	A	2.364e^-4	0.989	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14887867	2L_14887867_SNP [dm3] 2L_14887867_SNP [dm6]	G	A	2.369e^-4	0.989	INTERGENIC
3L	759799	3L_759799_SNP [dm3] 3L_759799_SNP [dm6]	A	T	2.375e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26811884	3R_26811884_SNP [dm3] 3R_30986162_SNP [dm6]	A	T	2.382e^-4	0.989	INTRON 5-HT7
3L	10628637	3L_10628637_SNP [dm3] 3L_10635537_SNP [dm6]	A	G	2.387e^-4	0.989	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2R	18393254	2R_18393254_SNP [dm3] 2R_22505749_SNP [dm6]	G	A	2.388e^-4	0.989	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5622179	2L_5622179_SNP [dm3] 2L_5622179_SNP [dm6]	G	A	2.393e^-4	0.989	INTRON Cyp6a16
3R	19017525	3R_19017525_SNP [dm3] 3R_23191803_SNP [dm6]	T	C	2.393e^-4	0.989	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_z
2L	16695364	2L_16695364_DEL [dm3] 2L_16695364_DEL [dm6]	GTAATG	G	2.396e^-4	0.989	UPSTREAM grp INTRON grp
3L	982324	3L_982324_SNP [dm3] 3L_982324_SNP [dm6]	T	C	2.396e^-4	0.989	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1 INTRON Glut1
X	925351	X_925351_SNP [dm3] X_1031318_SNP [dm6]	C	G	2.402e^-4	0.989	SYNONYMOUS_CODING CG33082 UPSTREAM CG14630 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	9286191	2L_9286191_SNP [dm3] 2L_9286191_SNP [dm6]	A	G	2.403e^-4	0.989	INTRON Ggamma30A
3R	19017519	3R_19017519_SNP [dm3] 3R_23191797_SNP [dm6]	C	T	2.405e^-4	0.989	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_z
2R	18609920	2R_18609920_SNP [dm3] 2R_22722415_SNP [dm6]	A	T	2.414e^-4	0.989	DOWNSTREAM jbug INTRON jbug
3L	3501019	3L_3501019_SNP [dm3] 3L_3501019_SNP [dm6]	G	A	2.415e^-4	0.989	INTRON CG42324
2R	16910302	2R_16910302_SNP [dm3] 2R_21022797_SNP [dm6]	G	A	2.421e^-4	0.989	INTRON RIC-3
2R	12034954	2R_12034954_SNP [dm3] 2R_16147449_SNP [dm6]	C	T	2.426e^-4	0.989	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
2L	12727592	2L_12727592_SNP [dm3] 2L_12727592_SNP [dm6]	A	G	2.427e^-4	0.989	INTRON MRP
3L	1469048	3L_1469048_SNP [dm3] 3L_1469048_SNP [dm6]	G	C	2.435e^-4	0.989	DOWNSTREAM rho INTRON Ptp61F
3L	12833443	3L_12833443_SNP [dm3] 3L_12840343_SNP [dm6]	C	T	2.436e^-4	0.989	INTRON CG10960
2L	9158939	2L_9158939_DEL [dm3] 2L_9158939_DEL [dm6]	TGGATCT	T	2.438e^-4	0.989	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	27430769	3R_27430769_DEL [dm3] 3R_31605047_DEL [dm6]	ATAGGTCGAAAGTCTACA...	A	2.439e^-4	0.989	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7553178	3R_7553178_SNP [dm3] 3R_11727456_SNP [dm6]	G	A	2.442e^-4	0.989	SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19059846	2R_19059846_DEL [dm3] 2R_23172323_DEL [dm6]	TAGTT	T	2.447e^-4	0.989	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9286030	2L_9286030_SNP [dm3] 2L_9286030_SNP [dm6]	G	C	2.448e^-4	0.989	INTRON Ggamma30A
2L	15494378	2L_15494378_SNP [dm3] 2L_15494378_SNP [dm6]	A	C	2.448e^-4	0.989	INTERGENIC
2R	10817231	2R_10817231_DEL [dm3] 2R_14929726_DEL [dm6]	TTTG	T	2.453e^-4	0.989	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
2R	18648107	2R_18648107_SNP [dm3] 2R_22760602_SNP [dm6]	C	T	2.460e^-4	0.989	INTRON CG42260	TF binding site mE1_TFBS_cad
3L	6816886	3L_6816886_SNP [dm3] 3L_6823786_SNP [dm6]	T	A	2.464e^-4	0.989	INTERGENIC
3R	20469754	3R_20469754_SNP [dm3] 3R_24644032_SNP [dm6]	A	T	2.464e^-4	0.989	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5921994	X_5921994_SNP [dm3] X_6027961_SNP [dm6]	A	C	2.466e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18393111	2R_18393111_SNP [dm3] 2R_22505606_SNP [dm6]	T	A	2.468e^-4	0.989	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20254310	3R_20254310_SNP [dm3] 3R_24428588_SNP [dm6]	C	T	2.485e^-4	0.989	INTRON nAChRalpha1
2R	19242850	2R_19242850_SNP [dm3] 2R_23355327_SNP [dm6]	G	T	2.487e^-4	0.989	UTR_5_PRIME Rpi DOWNSTREAM CG30409	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4949068	3L_4949068_SNP [dm3] 3L_4949068_SNP [dm6]	T	G	2.501e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	596651	2L_596651_SNP [dm3] 2L_596651_SNP [dm6]	C	T	2.502e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	1216294	3L_1216294_SNP [dm3] 3L_1216294_SNP [dm6]	A	T	2.509e^-4	0.989	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	2846324	2L_2846324_SNP [dm3] 2L_2846324_SNP [dm6]	A	G	2.515e^-4	0.989	SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2L	3199967	2L_3199967_INS [dm3] 2L_3199967_INS [dm6]	T	TGGTAGTT	2.529e^-4	0.989	UPSTREAM CG34393 INTRON CG34393
X	12097560	X_12097560_SNP [dm3] X_12203527_SNP [dm6]	T	A	2.536e^-4	0.989	UPSTREAM Ten-a INTRON Ten-a	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9884653	2L_9884653_SNP [dm3] 2L_9884653_SNP [dm6]	C	T	2.539e^-4	0.989	INTRON nAChRalpha6
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	2.565e^-4	0.989	UPSTREAM Cyp316a1 INTERGENIC
2R	6489080	2R_6489080_SNP [dm3] 2R_10601575_SNP [dm6]	A	C	2.572e^-4	0.989	INTRON psq
2R	18600400	2R_18600400_SNP [dm3] 2R_22712895_SNP [dm6]	C	T	2.585e^-4	0.989	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
2R	3735463	2R_3735463_SNP [dm3] 2R_7847958_SNP [dm6]	G	T	2.586e^-4	0.989	UPSTREAM Dgk INTRON Dgk
2R	16595185	2R_16595185_SNP [dm3] 2R_20707680_SNP [dm6]	G	C	2.600e^-4	0.989	INTRON dpr
2L	8985141	2L_8985141_SNP [dm3] 2L_8985141_SNP [dm6]	T	C	2.602e^-4	0.989	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8267131	2L_8267131_SNP [dm3] 2L_8267131_SNP [dm6]	G	A	2.612e^-4	0.989	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	20985484	3R_20985484_SNP [dm3] 3R_25159762_SNP [dm6]	G	A	2.628e^-4	0.989	INTERGENIC
2L	16496594	2L_16496594_SNP [dm3] 2L_16496594_SNP [dm6]	T	C	2.636e^-4	0.989	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_bab1
2R	7559109	2R_7559109_SNP [dm3] 2R_11671604_SNP [dm6]	T	C	2.642e^-4	0.989	UPSTREAM Tret1-1 INTRON Roc2 & 1 other	TF binding site mE1_TFBS_HSA
2R	7720266	2R_7720266_SNP [dm3] 2R_11832761_SNP [dm6]	G	C	2.648e^-4	0.989	INTRON Sobp
2R	19117609	2R_19117609_SNP [dm3] 2R_23230086_SNP [dm6]	G	A	2.660e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7587400	3L_7587400_SNP [dm3] 3L_7594300_SNP [dm6]	C	T	2.668e^-4	0.989	INTRON CG33275
2R	18644482	2R_18644482_SNP [dm3] 2R_22756977_SNP [dm6]	G	A	2.673e^-4	0.989	INTRON CG42260 & 1 other
3L	1093282	3L_1093282_SNP [dm3] 3L_1093282_SNP [dm6]	A	T	2.675e^-4	0.989	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	16760856	2L_16760856_SNP [dm3] 2L_16760856_SNP [dm6]	C	T	2.689e^-4	0.989	UPSTREAM ppk17 INTERGENIC
3L	15072341	3L_15072341_SNP [dm3] 3L_15079241_SNP [dm6]	A	G	2.693e^-4	0.989	UTR_5_PRIME cp309 UPSTREAM Or71a INTRON cp309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	4634314	X_4634314_SNP [dm3] X_4740281_SNP [dm6]	G	T	2.698e^-4	0.989	INTERGENIC
X	6214865	X_6214865_SNP [dm3] X_6320832_SNP [dm6]	C	G	2.700e^-4	0.989	NON_SYNONYMOUS_CODING CG15894
3L	10611722	3L_10611722_SNP [dm3] 3L_10618622_SNP [dm6]	C	A	2.711e^-4	0.989	INTERGENIC
3R	24564104	3R_24564104_SNP [dm3] 3R_28738382_SNP [dm6]	G	A	2.713e^-4	0.989	INTRON AstA-R2
3L	16298544	3L_16298544_SNP [dm3] 3L_16305444_SNP [dm6]	A	G	2.714e^-4	0.989	SYNONYMOUS_CODING CG13043 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5252932	2L_5252932_SNP [dm3] 2L_5252932_SNP [dm6]	G	A	2.717e^-4	0.989	INTRON tkv
2L	16623843	2L_16623843_INS [dm3] 2L_16623843_INS [dm6]	T	TAGCTCTT	2.718e^-4	0.989	INTRON CG42389
3L	1669118	3L_1669118_SNP [dm3] 3L_1669118_SNP [dm6]	C	T	2.720e^-4	0.989	NON_SYNONYMOUS_CODING RabX5 UPSTREAM RpL23A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26865959	3R_26865959_SNP [dm3] 3R_31040237_SNP [dm6]	G	C	2.723e^-4	0.989	SYNONYMOUS_CODING CanA1
3L	12837126	3L_12837126_SNP [dm3] 3L_12844026_SNP [dm6]	C	T	2.741e^-4	0.989	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	21510159	X_21510159_SNP [dm3] X_21639132_SNP [dm6]	C	A	2.742e^-4	0.989	INTERGENIC
3L	8741873	3L_8741873_SNP [dm3] 3L_8748773_SNP [dm6]	T	G	2.744e^-4	0.989	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26020031	3R_26020031_DEL [dm3] 3R_30194309_DEL [dm6]	AAG	A	2.744e^-4	0.989	DOWNSTREAM CG15531 INTERGENIC
3L	7005443	3L_7005443_SNP [dm3] 3L_7012343_SNP [dm6]	G	T	2.745e^-4	0.989	INTRON Mp	TF binding site mE1_TFBS_bab1
3L	5472941	3L_5472941_SNP [dm3] 3L_5479841_SNP [dm6]	G	A	2.753e^-4	0.989	UTR_5_PRIME CG4835	TF binding site mE1_TFBS_inv
2L	8284233	2L_8284233_SNP [dm3] 2L_8284233_SNP [dm6]	C	G	2.759e^-4	0.989	INTRON Btk29A	TF binding site mE1_TFBS_inv
3R	25673500	3R_25673500_DEL [dm3] 3R_29847778_DEL [dm6]	TAATGT	T	2.760e^-4	0.989	INTRON Cad99C
3R	25673509	3R_25673509_SNP [dm3] 3R_29847787_SNP [dm6]	C	T	2.760e^-4	0.989	INTRON Cad99C
3R	14168333	3R_14168333_SNP [dm3] 3R_18342611_SNP [dm6]	C	T	2.766e^-4	0.989	INTRON CG15803
2L	16366415	2L_16366415_SNP [dm3] 2L_16366415_SNP [dm6]	T	A	2.783e^-4	0.989	NON_SYNONYMOUS_CODING jhamt
3L	4345372	3L_4345372_INS [dm3] 3L_4345372_INS [dm6]	A	ATACACT	2.788e^-4	0.989	UPSTREAM CR45156 INTRON Cip4
3R	25987785	3R_25987785_SNP [dm3] 3R_30162063_SNP [dm6]	G	A	2.791e^-4	0.989	INTERGENIC
3R	25987794	3R_25987794_SNP [dm3] 3R_30162072_SNP [dm6]	C	A	2.791e^-4	0.989	INTERGENIC
X	4462924	X_4462924_INS [dm3] X_4568891_INS [dm6]	A	ACATA	2.793e^-4	0.989	INTRON CR32773	TF binding site mE1_TFBS_sens
3L	9518553	3L_9518553_SNP [dm3] 3L_9525453_SNP [dm6]	G	A	2.801e^-4	0.989	START_GAINED CG33700 UTR_5_PRIME CG33700
3R	3457238	3R_3457238_SNP [dm3] 3R_7631516_SNP [dm6]	C	A	2.805e^-4	0.989	INTRON CG34127
2R	15824847	2R_15824847_DEL [dm3] 2R_19937342_DEL [dm6]	AA	A	2.808e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7567941	2L_7567941_SNP [dm3] 2L_7567941_SNP [dm6]	C	T	2.820e^-4	0.989	INTRON RapGAP1
3R	10885437	3R_10885437_SNP [dm3] 3R_15059715_SNP [dm6]	T	A	2.824e^-4	0.989	INTRON dpr9
3L	1669175	3L_1669175_SNP [dm3] 3L_1669175_SNP [dm6]	G	A	2.825e^-4	0.989	SYNONYMOUS_CODING RabX5 UPSTREAM RpL23A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20489161	3R_20489161_SNP [dm3] 3R_24663439_SNP [dm6]	C	G	2.828e^-4	0.989	INTRON slo	regulatory region REDfly_CRMs
3L	2179727	3L_2179727_SNP [dm3] 3L_2179727_SNP [dm6]	G	A	2.839e^-4	0.989	INTERGENIC
3R	11114969	3R_11114969_SNP [dm3] 3R_15289247_SNP [dm6]	A	G	2.839e^-4	0.989	SYNONYMOUS_CODING Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	8021021	X_8021021_DEL [dm3] X_8126988_DEL [dm6]	TATATATATAT...	C	2.840e^-4	0.989	INTRON cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	7626768	2R_7626768_SNP [dm3] 2R_11739263_SNP [dm6]	T	G	2.846e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	6995495	3R_6995495_SNP [dm3] 3R_11169773_SNP [dm6]	C	A	2.846e^-4	0.989	SYNONYMOUS_CODING Ugt35b
2L	9286366	2L_9286366_SNP [dm3] 2L_9286366_SNP [dm6]	T	G	2.847e^-4	0.989	INTRON Ggamma30A
X	21940341	X_21940341_SNP [dm3] X_22538505_SNP [dm6]	A	C	2.849e^-4	0.989	SYNONYMOUS_CODING CG17598 INTRON CG17600	TF binding site mE1_TFBS_chinmo
3R	21486868	3R_21486868_SNP [dm3] 3R_25661146_SNP [dm6]	T	C	2.849e^-4	0.989	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7534517	3L_7534517_SNP [dm3] 3L_7541417_SNP [dm6]	G	A	2.858e^-4	0.989	UPSTREAM CG32374 DOWNSTREAM CG32376 INTERGENIC
2L	716844	2L_716844_SNP [dm3] 2L_716844_SNP [dm6]	A	T	2.864e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16720517	3R_16720517_SNP [dm3] 3R_20894795_SNP [dm6]	A	T	2.869e^-4	0.989	UTR_3_PRIME CG10830
3R	14082030	3R_14082030_SNP [dm3] 3R_18256308_SNP [dm6]	G	A	2.872e^-4	0.989	NON_SYNONYMOUS_CODING Tgs1 UTR_3_PRIME moi UPSTREAM Rpb4 & 1 other	TF binding site mE1_TFBS_sens
2L	2515904	2L_2515904_SNP [dm3] 2L_2515904_SNP [dm6]	G	A	2.877e^-4	0.989	INTERGENIC
X	2787961	X_2787961_SNP [dm3] X_2893928_SNP [dm6]	A	G	2.878e^-4	0.989	UTR_3_PRIME CG3526 INTRON kirre
2L	7942645	2L_7942645_SNP [dm3] 2L_7942645_SNP [dm6]	C	T	2.879e^-4	0.989	INTRON Snoo
X	8021019	X_8021019_SNP [dm3] X_8126986_SNP [dm6]	T	C	2.891e^-4	0.989	SPLICE_SITE_REGION cyr INTRON cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	17937207	3R_17937207_SNP [dm3] 3R_22111485_SNP [dm6]	C	A	2.913e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18890743	X_18890743_SNP [dm3] X_18996710_SNP [dm6]	C	A	2.915e^-4	0.989	INTRON CG43759	TF binding site mE1_TFBS_HSA
X	914003	X_914003_SNP [dm3] X_1019970_SNP [dm6]	A	T	2.929e^-4	0.989	UTR_3_PRIME CG32814 INTRON su_w[a]_ & 1 other
3L	10659343	3L_10659343_SNP [dm3] 3L_10666243_SNP [dm6]	C	T	2.930e^-4	0.989	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10082172	2L_10082172_SNP [dm3] 2L_10082172_SNP [dm6]	C	G	2.931e^-4	0.989	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12846073	3L_12846073_SNP [dm3] 3L_12852973_SNP [dm6]	G	T	2.937e^-4	0.989	UTR_3_PRIME Wbp2 UPSTREAM Ent3 DOWNSTREAM Wbp2
2L	16491464	2L_16491464_SNP [dm3] 2L_16491464_SNP [dm6]	C	A	2.941e^-4	0.989	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	8357054	3R_8357054_SNP [dm3] 3R_12531332_SNP [dm6]	A	T	2.942e^-4	0.989	INTRON Octbeta3R
X	13714995	X_13714995_SNP [dm3] X_13820962_SNP [dm6]	T	A	2.943e^-4	0.989	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19018556	3L_19018556_SNP [dm3] 3L_19025456_SNP [dm6]	A	G	2.947e^-4	0.989	INTRON nkd
X	4734498	X_4734498_INS [dm3] X_4840465_INS [dm6]	T	TGTG	2.980e^-4	0.989	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16825515	2R_16825515_SNP [dm3] 2R_20938010_SNP [dm6]	C	A	3.003e^-4	0.989	DOWNSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	12579711	2R_12579711_SNP [dm3] 2R_16692206_SNP [dm6]	C	T	3.007e^-4	0.989	INTRON CG30463 & 1 other
3L	4949037	3L_4949037_SNP [dm3] 3L_4949037_SNP [dm6]	G	A	3.010e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5232277	X_5232277_SNP [dm3] X_5338244_SNP [dm6]	G	C	3.010e^-4	0.989	INTERGENIC
2R	9107236	2R_9107236_SNP [dm3] 2R_13219731_SNP [dm6]	T	A	3.012e^-4	0.989	NON_SYNONYMOUS_CODING CG4646 UPSTREAM CG4630 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6547438	2L_6547438_SNP [dm3] 2L_6547438_SNP [dm6]	T	A	3.015e^-4	0.989	UPSTREAM eya INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9693095	2R_9693095_SNP [dm3] 2R_13805590_SNP [dm6]	A	T	3.015e^-4	0.989	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15824651	2R_15824651_SNP [dm3] 2R_19937146_SNP [dm6]	G	A	3.023e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15824751	2R_15824751_SNP [dm3] 2R_19937246_SNP [dm6]	G	A	3.024e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11895367	2L_11895367_SNP [dm3] 2L_11895367_SNP [dm6]	C	A	3.032e^-4	0.989	INTRON Pde1c
3L	3772472	3L_3772472_DEL [dm3] 3L_3772472_DEL [dm6]	AA	A	3.047e^-4	0.989	INTRON CG32264
X	881795	X_881795_SNP [dm3] X_987762_SNP [dm6]	G	A	3.053e^-4	0.989	INTERGENIC
2R	15810410	2R_15810410_SNP [dm3] 2R_19922905_SNP [dm6]	A	T	3.054e^-4	0.989	INTERGENIC
X	18890766	X_18890766_SNP [dm3] X_18996733_SNP [dm6]	A	C	3.078e^-4	0.989	INTRON CG43759	TF binding site mE1_TFBS_HSA
3R	19017293	3R_19017293_SNP [dm3] 3R_23191571_SNP [dm6]	T	G	3.083e^-4	0.989	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	12706793	2L_12706793_SNP [dm3] 2L_12706793_SNP [dm6]	C	A	3.085e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
2L	12706796	2L_12706796_SNP [dm3] 2L_12706796_SNP [dm6]	A	T	3.085e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
2L	12706797	2L_12706797_DEL [dm3] 2L_12706797_DEL [dm6]	AT	A	3.085e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
3L	6855215	3L_6855215_SNP [dm3] 3L_6862115_SNP [dm6]	A	G	3.087e^-4	0.989	INTERGENIC
3L	9219158	3L_9219158_SNP [dm3] 3L_9226058_SNP [dm6]	C	T	3.090e^-4	0.989	INTERGENIC
X	18966397	X_18966397_SNP [dm3] X_19072364_SNP [dm6]	C	T	3.101e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3582963	2L_3582963_SNP [dm3] 2L_3582963_SNP [dm6]	A	C	3.113e^-4	0.989	INTERGENIC
2R	18609966	2R_18609966_SNP [dm3] 2R_22722461_SNP [dm6]	G	A	3.126e^-4	0.989	DOWNSTREAM jbug INTRON jbug
2L	12706785	2L_12706785_DEL [dm3] 2L_12706785_DEL [dm6]	AGGTCG	A	3.140e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
2R	16594375	2R_16594375_SNP [dm3] 2R_20706870_SNP [dm6]	G	A	3.160e^-4	0.989	INTRON dpr	TF binding site mE1_TFBS_chinmo
2L	7722317	2L_7722317_SNP [dm3] 2L_7722317_SNP [dm6]	C	G	3.161e^-4	0.989	DOWNSTREAM CG13795 INTRON CG13794
3L	8956183	3L_8956183_SNP [dm3] 3L_8963083_SNP [dm6]	C	T	3.161e^-4	0.989	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_sens
3R	5151452	3R_5151452_SNP [dm3] 3R_9325730_SNP [dm6]	G	T	3.167e^-4	0.989	INTRON CG8861
3L	18884954	3L_18884954_SNP [dm3] 3L_18891854_SNP [dm6]	G	A	3.178e^-4	0.989	UPSTREAM NijB INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	12727406	2L_12727406_SNP [dm3] 2L_12727406_SNP [dm6]	T	G	3.182e^-4	0.989	INTRON MRP
3R	24820422	3R_24820422_SNP [dm3] 3R_28994700_SNP [dm6]	T	C	3.189e^-4	0.989	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6566472	X_6566472_SNP [dm3] X_6672439_SNP [dm6]	C	T	3.191e^-4	0.989	INTRON CG3198
2R	11418431	2R_11418431_SNP [dm3] 2R_15530926_SNP [dm6]	G	T	3.191e^-4	0.989	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18650911	2R_18650911_SNP [dm3] 2R_22763406_SNP [dm6]	A	G	3.208e^-4	0.989	UPSTREAM CG13527 INTRON CG42260
2R	17695750	2R_17695750_DEL [dm3] 2R_21808245_DEL [dm6]	TGGT	T	3.211e^-4	0.989	INTERGENIC
2R	4013430	2R_4013430_SNP [dm3] 2R_8125925_SNP [dm6]	C	G	3.215e^-4	0.989	NON_SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	9390236	3R_9390236_SNP [dm3] 3R_13564514_SNP [dm6]	G	A	3.223e^-4	0.989	INTERGENIC
X	18890787	X_18890787_SNP [dm3] X_18996754_SNP [dm6]	C	T	3.230e^-4	0.989	INTRON CG43759	TF binding site mE1_TFBS_HSA
3L	4015923	3L_4015923_SNP [dm3] 3L_4015923_SNP [dm6]	T	C	3.232e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	18966400	X_18966400_SNP [dm3] X_19072367_SNP [dm6]	C	G	3.232e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7755220	3L_7755220_SNP [dm3] 3L_7762120_SNP [dm6]	G	C	3.243e^-4	0.989	SYNONYMOUS_CODING Hn UTR_5_PRIME Hn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8144114	X_8144114_SNP [dm3] X_8250081_SNP [dm6]	T	G	3.250e^-4	0.989	SYNONYMOUS_CODING ND75	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11256286	X_11256286_SNP [dm3] X_11362253_SNP [dm6]	A	G	3.256e^-4	0.989	INTRON hop	TF binding site mE1_TFBS_sens
X	17375733	X_17375733_SNP [dm3] X_17481700_SNP [dm6]	T	C	3.260e^-4	0.989	INTRON CG43658
3L	5316703	3L_5316703_SNP [dm3] 3L_5323603_SNP [dm6]	A	T	3.260e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8636541	2L_8636541_SNP [dm3] 2L_8636541_SNP [dm6]	A	G	3.262e^-4	0.989	INTRON Sema-1a
2R	4011286	2R_4011286_SNP [dm3] 2R_8123781_SNP [dm6]	T	C	3.266e^-4	0.989	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	3316140	3L_3316140_SNP [dm3] 3L_3316140_SNP [dm6]	A	C	3.270e^-4	0.989	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1776859	3L_1776859_SNP [dm3] 3L_1776859_SNP [dm6]	A	T	3.274e^-4	0.989	NON_SYNONYMOUS_CODING CG12018 UPSTREAM mRpL46 DOWNSTREAM CG2021	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	2201260	3R_2201260_SNP [dm3] 3R_6375538_SNP [dm6]	T	A	3.280e^-4	0.989	DOWNSTREAM snoRNA:83E4-5 INTRON CG42564
3R	9390136	3R_9390136_SNP [dm3] 3R_13564414_SNP [dm6]	C	T	3.281e^-4	0.989	INTERGENIC
X	18984008	X_18984008_SNP [dm3] X_19089975_SNP [dm6]	A	G	3.292e^-4	0.989	INTERGENIC
3R	20287331	3R_20287331_SNP [dm3] 3R_24461609_SNP [dm6]	C	G	3.294e^-4	0.989	INTERGENIC
2L	7942633	2L_7942633_SNP [dm3] 2L_7942633_SNP [dm6]	T	C	3.294e^-4	0.989	INTRON Snoo
2R	19398425	2R_19398425_SNP [dm3] 2R_23510902_SNP [dm6]	A	T	3.295e^-4	0.989	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5370582	3L_5370582_SNP [dm3] 3L_5377482_SNP [dm6]	C	T	3.306e^-4	0.989	UPSTREAM CR45743 INTERGENIC
3R	7661501	3R_7661501_INS [dm3] 3R_11835779_INS [dm6]	T	TCG	3.323e^-4	0.989	INTRON CG6959
2L	7578643	2L_7578643_SNP [dm3] 2L_7578643_SNP [dm6]	T	C	3.324e^-4	0.989	UTR_5_PRIME RapGAP1
3R	9390217	3R_9390217_SNP [dm3] 3R_13564495_SNP [dm6]	C	G	3.328e^-4	0.989	INTERGENIC
3L	10093644	3L_10093644_SNP [dm3] 3L_10100544_SNP [dm6]	A	G	3.329e^-4	0.989	INTRON dpr6 & 1 other
2R	17625290	2R_17625290_SNP [dm3] 2R_21737785_SNP [dm6]	A	T	3.330e^-4	0.989	INTERGENIC
3R	9405847	3R_9405847_INS [dm3] 3R_13580125_INS [dm6]	G	GATGGTGG	3.346e^-4	0.989	INTERGENIC
2L	7240000	2L_7240000_SNP [dm3] 2L_7240000_SNP [dm6]	T	C	3.347e^-4	0.989	INTRON Ndae1
3R	25992694	3R_25992694_SNP [dm3] 3R_30166972_SNP [dm6]	A	T	3.356e^-4	0.989	UPSTREAM CG31030 INTRON CG31028	TF binding site BDTNP1_TFBS_twi
2R	16917365	2R_16917365_SNP [dm3] 2R_21029860_SNP [dm6]	G	A	3.365e^-4	0.989	EXON CR45148
3R	18962313	3R_18962313_SNP [dm3] 3R_23136591_SNP [dm6]	G	C	3.378e^-4	0.989	INTRON hh
3L	2976168	3L_2976168_SNP [dm3] 3L_2976168_SNP [dm6]	C	T	3.381e^-4	0.989	EXON CR44530
2R	9696422	2R_9696422_SNP [dm3] 2R_13808917_SNP [dm6]	A	C	3.383e^-4	0.989	INTRON stj
2L	16131898	2L_16131898_SNP [dm3] 2L_16131898_SNP [dm6]	A	G	3.406e^-4	0.989	INTERGENIC
2R	16917375	2R_16917375_SNP [dm3] 2R_21029870_SNP [dm6]	C	A	3.408e^-4	0.989	EXON CR45148
3L	4497387	3L_4497387_SNP [dm3] 3L_4497387_SNP [dm6]	A	G	3.413e^-4	0.989	INTRON CG13721	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8918130	2R_8918130_DEL [dm3] 2R_13030625_DEL [dm6]	TTG	T	3.425e^-4	0.989	INTERGENIC
3R	2354311	3R_2354311_SNP [dm3] 3R_6528589_SNP [dm6]	A	C	3.426e^-4	0.989	UTR_3_PRIME CG15185 DOWNSTREAM dpr11
2L	11681954	2L_11681954_SNP [dm3] 2L_11681954_SNP [dm6]	C	T	3.427e^-4	0.989	INTERGENIC
3R	20514347	3R_20514347_SNP [dm3] 3R_24688625_SNP [dm6]	G	A	3.428e^-4	0.989	INTRON slo
3L	5370585	3L_5370585_DEL [dm3] 3L_5377485_DEL [dm6]	TT	A	3.432e^-4	0.989	UPSTREAM CR45743 INTERGENIC
X	12273130	X_12273130_SNP [dm3] X_12379097_SNP [dm6]	T	A	3.440e^-4	0.989	INTERGENIC
2R	17545018	2R_17545018_SNP [dm3] 2R_21657513_SNP [dm6]	T	C	3.442e^-4	0.989	UTR_3_PRIME CG10082 UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082
X	4434730	X_4434730_SNP [dm3] X_4540697_SNP [dm6]	T	C	3.442e^-4	0.989	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	1646498	3L_1646498_SNP [dm3] 3L_1646498_SNP [dm6]	A	G	3.457e^-4	0.989	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3017427	2L_3017427_SNP [dm3] 2L_3017427_SNP [dm6]	C	G	3.462e^-4	0.989	NON_SYNONYMOUS_CODING CG17224	TF binding site mE1_TFBS_chinmo
3R	21005025	3R_21005025_INS [dm3] 3R_25179303_INS [dm6]	T	TT	3.471e^-4	0.989	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9534513	3L_9534513_SNP [dm3] 3L_9541413_SNP [dm6]	T	C	3.475e^-4	0.989	DOWNSTREAM Ir67a INTERGENIC
3L	10929993	3L_10929993_SNP [dm3] 3L_10936893_SNP [dm6]	C	A	3.479e^-4	0.989	INTERGENIC
2L	9286707	2L_9286707_SNP [dm3] 2L_9286707_SNP [dm6]	A	C	3.494e^-4	0.989	INTRON Ggamma30A
3L	9343244	3L_9343244_SNP [dm3] 3L_9350144_SNP [dm6]	T	C	3.494e^-4	0.989	DOWNSTREAM UGP INTRON PGRP-LF
3L	3792233	3L_3792233_SNP [dm3] 3L_3792233_SNP [dm6]	T	A	3.494e^-4	0.989	DOWNSTREAM CG32266 INTRON CG32264
2R	18609865	2R_18609865_SNP [dm3] 2R_22722360_SNP [dm6]	G	A	3.497e^-4	0.989	DOWNSTREAM jbug INTRON jbug
3R	21487579	3R_21487579_SNP [dm3] 3R_25661857_SNP [dm6]	A	T	3.510e^-4	0.989	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8742012	3L_8742012_DEL [dm3] 3L_8748912_DEL [dm6]	TG	T	3.510e^-4	0.989	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9535064	3L_9535064_SNP [dm3] 3L_9541964_SNP [dm6]	C	T	3.511e^-4	0.989	DOWNSTREAM Ir67a INTERGENIC
3R	16720518	3R_16720518_SNP [dm3] 3R_20894796_SNP [dm6]	A	T	3.515e^-4	0.989	UTR_3_PRIME CG10830
3R	10299135	3R_10299135_SNP [dm3] 3R_14473413_SNP [dm6]	C	T	3.523e^-4	0.989	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11461266	2L_11461266_INS [dm3] 2L_11461266_INS [dm6]	C	AA	3.527e^-4	0.989	INTERGENIC
3L	4949051	3L_4949051_SNP [dm3] 3L_4949051_SNP [dm6]	G	C	3.532e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9011409	2L_9011409_DEL [dm3] 2L_9011409_DEL [dm6]	CTAT	C	3.548e^-4	0.989	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	1469050	3L_1469050_SNP [dm3] 3L_1469050_SNP [dm6]	A	T	3.550e^-4	0.989	DOWNSTREAM rho INTRON Ptp61F
2L	9011394	2L_9011394_SNP [dm3] 2L_9011394_SNP [dm6]	T	C	3.561e^-4	0.989	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	8885823	2L_8885823_SNP [dm3] 2L_8885823_SNP [dm6]	T	C	3.561e^-4	0.989	DOWNSTREAM CR44415 INTERGENIC
3R	21008938	3R_21008938_DEL [dm3] 3R_25183216_DEL [dm6]	ATATGTCGGCACTTTAATGG...	A	3.566e^-4	0.989	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11711327	3R_11711327_SNP [dm3] 3R_15885605_SNP [dm6]	A	G	3.568e^-4	0.989	INTERGENIC
2L	12706720	2L_12706720_SNP [dm3] 2L_12706720_SNP [dm6]	T	G	3.569e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
3R	7927234	3R_7927234_SNP [dm3] 3R_12101512_SNP [dm6]	C	A	3.576e^-4	0.989	INTRON dpr17
3L	8447865	3L_8447865_DEL [dm3] 3L_8454765_DEL [dm6]	TGG	T	3.585e^-4	0.989	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	4949165	3L_4949165_SNP [dm3] 3L_4949165_SNP [dm6]	G	T	3.590e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10888035	2R_10888035_SNP [dm3] 2R_15000530_SNP [dm6]	G	A	3.602e^-4	0.989	INTERGENIC
2R	6795172	2R_6795172_SNP [dm3] 2R_10907667_SNP [dm6]	G	C	3.611e^-4	0.989	INTERGENIC
2L	11681929	2L_11681929_SNP [dm3] 2L_11681929_SNP [dm6]	A	C	3.645e^-4	0.989	INTERGENIC
2L	7568050	2L_7568050_SNP [dm3] 2L_7568050_SNP [dm6]	T	A	3.646e^-4	0.989	INTRON RapGAP1
2R	8256049	2R_8256049_SNP [dm3] 2R_12368544_SNP [dm6]	T	C	3.651e^-4	0.989	INTRON CG33012
3L	9343330	3L_9343330_SNP [dm3] 3L_9350230_SNP [dm6]	C	A	3.656e^-4	0.989	DOWNSTREAM UGP INTRON PGRP-LF
3R	21486992	3R_21486992_SNP [dm3] 3R_25661270_SNP [dm6]	G	A	3.663e^-4	0.989	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	22013364	2L_22013364_SNP [dm3] 2L_22013364_SNP [dm6]	A	G	3.668e^-4	0.989	INTERGENIC
3R	18762369	3R_18762369_SNP [dm3] 3R_22936647_SNP [dm6]	C	T	3.668e^-4	0.989	INTRON klg
2L	1977815	2L_1977815_SNP [dm3] 2L_1977815_SNP [dm6]	G	C	3.671e^-4	0.989	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2146789	3L_2146789_SNP [dm3] 3L_2146789_SNP [dm6]	G	A	3.676e^-4	0.989	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6936501	2L_6936501_SNP [dm3] 2L_6936501_SNP [dm6]	C	T	3.677e^-4	0.989	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16757986	2R_16757986_SNP [dm3] 2R_20870481_SNP [dm6]	G	A	3.680e^-4	0.989	SYNONYMOUS_CODING IM14 UPSTREAM Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16297093	3L_16297093_SNP [dm3] 3L_16303993_SNP [dm6]	G	T	3.681e^-4	0.989	UPSTREAM CG13044 & 1 other INTERGENIC
2R	7651608	2R_7651608_SNP [dm3] 2R_11764103_SNP [dm6]	G	A	3.684e^-4	0.989	INTRON ths
3R	11711972	3R_11711972_SNP [dm3] 3R_15886250_SNP [dm6]	A	G	3.687e^-4	0.989	INTERGENIC
2L	1977808	2L_1977808_SNP [dm3] 2L_1977808_SNP [dm6]	G	T	3.689e^-4	0.989	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18647965	2R_18647965_SNP [dm3] 2R_22760460_SNP [dm6]	C	T	3.706e^-4	0.989	NON_SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad
3L	5370558	3L_5370558_SNP [dm3] 3L_5377458_SNP [dm6]	C	G	3.708e^-4	0.989	UPSTREAM CR45743 INTERGENIC
3L	1452579	3L_1452579_SNP [dm3] 3L_1452579_SNP [dm6]	T	G	3.716e^-4	0.989	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	385204	X_385204_SNP [dm3] X_491171_SNP [dm6]	C	T	3.722e^-4	0.989	SYNONYMOUS_CODING CG17896 DOWNSTREAM CG3156
3L	9343332	3L_9343332_SNP [dm3] 3L_9350232_SNP [dm6]	C	A	3.723e^-4	0.989	DOWNSTREAM UGP INTRON PGRP-LF
2L	7743044	2L_7743044_SNP [dm3] 2L_7743044_SNP [dm6]	T	C	3.726e^-4	0.989	DOWNSTREAM CG7214 INTERGENIC
2L	7046464	2L_7046464_SNP [dm3] 2L_7046464_SNP [dm6]	T	C	3.743e^-4	0.989	NON_SYNONYMOUS_CODING milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6739171	2R_6739171_SNP [dm3] 2R_10851666_SNP [dm6]	C	G	3.747e^-4	0.989	INTRON CG30015
3L	11448578	3L_11448578_SNP [dm3] 3L_11455478_SNP [dm6]	T	C	3.753e^-4	0.989	INTERGENIC
3L	11448579	3L_11448579_SNP [dm3] 3L_11455479_SNP [dm6]	G	C	3.753e^-4	0.989	INTERGENIC
2R	19140715	2R_19140715_SNP [dm3] 2R_23253192_SNP [dm6]	G	T	3.754e^-4	0.989	INTERGENIC
2L	16490951	2L_16490951_SNP [dm3] 2L_16490951_SNP [dm6]	T	A	3.755e^-4	0.989	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
3R	14002383	3R_14002383_SNP [dm3] 3R_18176661_SNP [dm6]	T	C	3.765e^-4	0.989	SYNONYMOUS_CODING PP2A-B'
3R	7836936	3R_7836936_SNP [dm3] 3R_12011214_SNP [dm6]	T	C	3.769e^-4	0.989	SYNONYMOUS_CODING GCC185 UPSTREAM KLHL18	TF binding site mE1_TFBS_sens
X	15156573	X_15156573_INS [dm3] X_15262540_INS [dm6]	T	TTC	3.770e^-4	0.989	INTERGENIC
2L	4124612	2L_4124612_SNP [dm3] 2L_4124612_SNP [dm6]	T	A	3.771e^-4	0.989	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7282124	3L_7282124_DEL [dm3] 3L_7289024_DEL [dm6]	TA	T	3.779e^-4	0.989	INTRON unc-13-4A
2R	9442687	2R_9442687_SNP [dm3] 2R_13555182_SNP [dm6]	G	A	3.803e^-4	0.989	SYNONYMOUS_CODING Roe1 UPSTREAM link	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	8740488	3L_8740488_SNP [dm3] 3L_8747388_SNP [dm6]	A	T	3.806e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs
2R	16916265	2R_16916265_SNP [dm3] 2R_21028760_SNP [dm6]	A	T	3.810e^-4	0.989	DOWNSTREAM CR45148 INTERGENIC
2R	19398453	2R_19398453_SNP [dm3] 2R_23510930_SNP [dm6]	G	T	3.814e^-4	0.989	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14127805	2R_14127805_SNP [dm3] 2R_18240300_SNP [dm6]	A	G	3.816e^-4	0.989	INTERGENIC
3L	18280241	3L_18280241_SNP [dm3] 3L_18287141_SNP [dm6]	A	C	3.822e^-4	0.989	INTERGENIC
3R	25672660	3R_25672660_SNP [dm3] 3R_29846938_SNP [dm6]	T	C	3.834e^-4	0.989	INTRON Cad99C
3L	8373689	3L_8373689_SNP [dm3] 3L_8380589_SNP [dm6]	G	A	3.836e^-4	0.989	DOWNSTREAM ImpE1 INTRON ImpE1
X	18890912	X_18890912_SNP [dm3] X_18996879_SNP [dm6]	C	G	3.840e^-4	0.989	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7567530	2L_7567530_SNP [dm3] 2L_7567530_SNP [dm6]	T	A	3.844e^-4	0.989	INTRON RapGAP1
2R	12271121	2R_12271121_SNP [dm3] 2R_16383616_SNP [dm6]	A	G	3.852e^-4	0.989	UTR_3_PRIME CG43187
2R	15815105	2R_15815105_SNP [dm3] 2R_19927600_SNP [dm6]	C	A	3.856e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15816420	2L_15816420_SNP [dm3] 2L_15816420_SNP [dm6]	A	G	3.866e^-4	0.989	INTERGENIC
3L	17688333	3L_17688333_SNP [dm3] 3L_17695233_SNP [dm6]	T	A	3.868e^-4	0.989	INTRON Ccn
3R	21824045	3R_21824045_SNP [dm3] 3R_25998323_SNP [dm6]	C	T	3.883e^-4	0.989	UTR_3_PRIME E_spl_mdelta-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	16711881	X_16711881_SNP [dm3] X_16817848_SNP [dm6]	T	A	3.884e^-4	0.989	INTRON CG4829
2L	11681940	2L_11681940_SNP [dm3] 2L_11681940_SNP [dm6]	T	C	3.884e^-4	0.989	INTERGENIC
2R	19296747	2R_19296747_DEL [dm3] 2R_23409224_DEL [dm6]	ATG	A	3.888e^-4	0.989	INTERGENIC
3L	4669735	3L_4669735_SNP [dm3] 3L_4669735_SNP [dm6]	G	A	3.889e^-4	0.989	INTRON axo	TF binding site BDTNP1_TFBS_twi
3L	9362213	3L_9362213_SNP [dm3] 3L_9369113_SNP [dm6]	A	G	3.897e^-4	0.989	SYNONYMOUS_CODING CG4452 UTR_3_PRIME CG4452	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18884886	3L_18884886_SNP [dm3] 3L_18891786_SNP [dm6]	C	T	3.947e^-4	0.989	UPSTREAM NijB INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	16494548	2L_16494548_SNP [dm3] 2L_16494548_SNP [dm6]	G	C	3.955e^-4	0.989	INTRON Tpr2	TF binding site mE1_TFBS_bab1
2R	12035128	2R_12035128_SNP [dm3] 2R_16147623_SNP [dm6]	C	T	3.959e^-4	0.989	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
3R	21456388	3R_21456388_SNP [dm3] 3R_25630666_SNP [dm6]	G	T	3.964e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3316146	3L_3316146_SNP [dm3] 3L_3316146_SNP [dm6]	T	A	3.966e^-4	0.989	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7749788	2R_7749788_SNP [dm3] 2R_11862283_SNP [dm6]	A	G	3.966e^-4	0.989	DOWNSTREAM TwdlBeta & 1 other INTERGENIC
2R	18481099	2R_18481099_SNP [dm3] 2R_22593594_SNP [dm6]	G	A	3.970e^-4	0.989	UPSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6489087	2R_6489087_SNP [dm3] 2R_10601582_SNP [dm6]	A	T	3.971e^-4	0.989	INTRON psq
X	387217	X_387217_SNP [dm3] X_493184_SNP [dm6]	G	A	3.972e^-4	0.989	UPSTREAM CG17896 INTRON CG17896	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16917016	2R_16917016_SNP [dm3] 2R_21029511_SNP [dm6]	G	A	3.974e^-4	0.989	EXON CR45148
2R	18640707	2R_18640707_SNP [dm3] 2R_22753202_SNP [dm6]	G	A	3.984e^-4	0.989	INTRON CG42260
X	5232284	X_5232284_SNP [dm3] X_5338251_SNP [dm6]	A	T	3.987e^-4	0.989	INTERGENIC
X	5232293	X_5232293_SNP [dm3] X_5338260_SNP [dm6]	G	A	3.987e^-4	0.989	INTERGENIC
3R	21487866	3R_21487866_SNP [dm3] 3R_25662144_SNP [dm6]	A	G	3.989e^-4	0.989	UTR_5_PRIME RASSF8 UPSTREAM Tnks EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2254766	3L_2254766_SNP [dm3] 3L_2254766_SNP [dm6]	A	G	3.991e^-4	0.989	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	6724711	3L_6724711_SNP [dm3] 3L_6731611_SNP [dm6]	T	C	3.999e^-4	0.989	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16918659	2R_16918659_SNP [dm3] 2R_21031154_SNP [dm6]	G	A	4.006e^-4	0.989	INTERGENIC
2L	13765374	2L_13765374_SNP [dm3] 2L_13765374_SNP [dm6]	G	T	4.007e^-4	0.989	INTRON TM9SF4
3R	26663682	3R_26663682_SNP [dm3] 3R_30837960_SNP [dm6]	C	A	4.009e^-4	0.989	INTRON CG15544
2R	11740729	2R_11740729_SNP [dm3] 2R_15853224_SNP [dm6]	A	G	4.011e^-4	0.989	UTR_3_PRIME tun	TF binding site mE1_TFBS_HSA
2R	8594967	2R_8594967_SNP [dm3] 2R_12707462_SNP [dm6]	A	G	4.012e^-4	0.989	INTRON CG42663
3R	19017358	3R_19017358_SNP [dm3] 3R_23191636_SNP [dm6]	A	G	4.018e^-4	0.989	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_z
2L	6249626	2L_6249626_SNP [dm3] 2L_6249626_SNP [dm6]	C	A	4.019e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11681957	2L_11681957_SNP [dm3] 2L_11681957_SNP [dm6]	T	C	4.027e^-4	0.989	INTERGENIC
X	21325244	X_21325244_SNP [dm3] X_21454217_SNP [dm6]	T	G	4.028e^-4	0.989	INTRON CG42343
2R	12269421	2R_12269421_SNP [dm3] 2R_16381916_SNP [dm6]	G	C	4.032e^-4	0.989	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3L	6704386	3L_6704386_SNP [dm3] 3L_6711286_SNP [dm6]	T	C	4.035e^-4	0.989	INTERGENIC
2R	12270229	2R_12270229_SNP [dm3] 2R_16382724_SNP [dm6]	G	T	4.037e^-4	0.989	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
2L	8590956	2L_8590956_SNP [dm3] 2L_8590956_SNP [dm6]	A	T	4.048e^-4	0.989	UPSTREAM CR43855 INTRON Sema-1a & 1 other
2R	16919758	2R_16919758_SNP [dm3] 2R_21032253_SNP [dm6]	G	A	4.051e^-4	0.989	INTERGENIC
2L	9287952	2L_9287952_SNP [dm3] 2L_9287952_SNP [dm6]	C	T	4.059e^-4	0.989	INTRON Ggamma30A
2L	8284292	2L_8284292_SNP [dm3] 2L_8284292_SNP [dm6]	T	G	4.075e^-4	0.989	INTRON Btk29A	TF binding site mE1_TFBS_inv
2R	11405197	2R_11405197_SNP [dm3] 2R_15517692_SNP [dm6]	A	T	4.080e^-4	0.989	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
3R	7410921	3R_7410921_SNP [dm3] 3R_11585199_SNP [dm6]	C	T	4.080e^-4	0.989	UTR_3_PRIME wkd DOWNSTREAM CG6791
2R	18641560	2R_18641560_SNP [dm3] 2R_22754055_SNP [dm6]	A	T	4.082e^-4	0.989	INTRON CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	384836	X_384836_SNP [dm3] X_490803_SNP [dm6]	T	A	4.088e^-4	0.989	UTR_3_PRIME CG17896 DOWNSTREAM CG3156
X	17149706	X_17149706_SNP [dm3] X_17255673_SNP [dm6]	T	C	4.088e^-4	0.989	INTRON f
3R	23875646	3R_23875646_SNP [dm3] 3R_28049924_SNP [dm6]	C	T	4.097e^-4	0.989	SYNONYMOUS_CODING CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9286060	2L_9286060_SNP [dm3] 2L_9286060_SNP [dm6]	T	C	4.099e^-4	0.989	INTRON Ggamma30A
2R	17624545	2R_17624545_SNP [dm3] 2R_21737040_SNP [dm6]	C	A	4.107e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26004735	3R_26004735_SNP [dm3] 3R_30179013_SNP [dm6]	A	G	4.111e^-4	0.989	SYNONYMOUS_CODING CG15530	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7091189	2L_7091189_SNP [dm3] 2L_7091189_SNP [dm6]	C	T	4.114e^-4	0.989	INTERGENIC
2L	22049749	2L_22049749_SNP [dm3] 2L_22049749_SNP [dm6]	C	A	4.124e^-4	0.989	INTERGENIC
2R	7756496	2R_7756496_SNP [dm3] 2R_11868991_SNP [dm6]	A	G	4.126e^-4	0.989	SYNONYMOUS_CODING CG13185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7005449	3L_7005449_DEL [dm3] 3L_7012349_DEL [dm6]	CT	A	4.130e^-4	0.989	INTRON Mp	TF binding site mE1_TFBS_bab1
3L	7005454	3L_7005454_DEL [dm3] 3L_7012354_DEL [dm6]	AGT	A	4.130e^-4	0.989	INTRON Mp	TF binding site mE1_TFBS_bab1
3L	15902386	3L_15902386_SNP [dm3] 3L_15909286_SNP [dm6]	G	T	4.133e^-4	0.989	INTRON sff
X	8639103	X_8639103_SNP [dm3] X_8745070_SNP [dm6]	A	G	4.135e^-4	0.989	INTERGENIC
2R	7522129	2R_7522129_SNP [dm3] 2R_11634624_SNP [dm6]	C	A	4.155e^-4	0.989	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12139285	2R_12139285_SNP [dm3] 2R_16251780_SNP [dm6]	C	T	4.161e^-4	0.989	INTRON CngA
3L	9345485	3L_9345485_SNP [dm3] 3L_9352385_SNP [dm6]	A	C	4.164e^-4	0.989	DOWNSTREAM PGRP-LF INTRON UGP
2L	8159015	2L_8159015_SNP [dm3] 2L_8159015_SNP [dm6]	A	T	4.165e^-4	0.989	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
2L	15147182	2L_15147182_SNP [dm3] 2L_15147182_SNP [dm6]	A	C	4.184e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11892572	3R_11892572_SNP [dm3] 3R_16066850_SNP [dm6]	A	G	4.198e^-4	0.989	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15815116	2R_15815116_SNP [dm3] 2R_19927611_SNP [dm6]	C	A	4.203e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8324610	3L_8324610_SNP [dm3] 3L_8331510_SNP [dm6]	C	T	4.206e^-4	0.989	INTERGENIC
3L	8943252	3L_8943252_INS [dm3] 3L_8950152_INS [dm6]	A	AA	4.221e^-4	0.989	INTRON orb2 & 1 other
2L	2846724	2L_2846724_SNP [dm3] 2L_2846724_SNP [dm6]	G	A	4.227e^-4	0.989	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557 & 1 other
2R	7679882	2R_7679882_SNP [dm3] 2R_11792377_SNP [dm6]	G	T	4.230e^-4	0.989	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12035065	2R_12035065_SNP [dm3] 2R_16147560_SNP [dm6]	G	A	4.233e^-4	0.989	SYNONYMOUS_CODING Ext2	TF binding site mE1_TFBS_sens
3L	6817615	3L_6817615_SNP [dm3] 3L_6824515_SNP [dm6]	T	C	4.233e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs
2L	4789488	2L_4789488_INS [dm3] 2L_4789488_INS [dm6]	T	TT	4.235e^-4	0.989	INTRON CG15630
X	6125967	X_6125967_INS [dm3] X_6231934_INS [dm6]	G	GCGAGTG	4.237e^-4	0.989	UTR_3_PRIME CG14446
2R	7057025	2R_7057025_SNP [dm3] 2R_11169520_SNP [dm6]	A	T	4.240e^-4	0.989	INTRON shn & 1 other
3L	7005444	3L_7005444_SNP [dm3] 3L_7012344_SNP [dm6]	A	T	4.246e^-4	0.989	INTRON Mp	TF binding site mE1_TFBS_bab1
3R	19013585	3R_19013585_SNP [dm3] 3R_23187863_SNP [dm6]	C	T	4.248e^-4	0.989	INTRON cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18889219	X_18889219_SNP [dm3] X_18995186_SNP [dm6]	T	C	4.253e^-4	0.989	INTRON CG43759
3L	10722649	3L_10722649_SNP [dm3] 3L_10729549_SNP [dm6]	G	A	4.256e^-4	0.989	INTERGENIC
2L	7753709	2L_7753709_SNP [dm3] 2L_7753709_SNP [dm6]	A	C	4.258e^-4	0.989	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	10164407	3L_10164407_SNP [dm3] 3L_10171307_SNP [dm6]	G	T	4.260e^-4	0.989	INTRON dpr10
3L	6855201	3L_6855201_DEL [dm3] 3L_6862101_DEL [dm6]	CT	C	4.265e^-4	0.989	INTERGENIC
3R	9393502	3R_9393502_SNP [dm3] 3R_13567780_SNP [dm6]	C	T	4.283e^-4	0.989	INTERGENIC
3R	26013032	3R_26013032_SNP [dm3] 3R_30187310_SNP [dm6]	G	A	4.294e^-4	0.989	INTRON CG9747
2R	10517993	2R_10517993_SNP [dm3] 2R_14630488_SNP [dm6]	A	T	4.294e^-4	0.989	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2826630	2L_2826630_SNP [dm3] 2L_2826630_SNP [dm6]	A	C	4.297e^-4	0.989	INTRON Duox
3R	8720044	3R_8720044_SNP [dm3] 3R_12894322_SNP [dm6]	A	C	4.298e^-4	0.989	EXON CR33929
2L	3887950	2L_3887950_SNP [dm3] 2L_3887950_SNP [dm6]	T	G	4.303e^-4	0.989	INTRON capu
X	17150219	X_17150219_SNP [dm3] X_17256186_SNP [dm6]	T	C	4.308e^-4	0.989	INTRON f
X	20628590	X_20628590_SNP [dm3] X_20757563_SNP [dm6]	C	A	4.313e^-4	0.989	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	4460996	2R_4460996_SNP [dm3] 2R_8573491_SNP [dm6]	C	G	4.314e^-4	0.989	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
3L	1646586	3L_1646586_SNP [dm3] 3L_1646586_SNP [dm6]	T	C	4.321e^-4	0.989	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11681947	2L_11681947_SNP [dm3] 2L_11681947_SNP [dm6]	G	C	4.321e^-4	0.989	INTERGENIC
2R	17618739	2R_17618739_SNP [dm3] 2R_21731234_SNP [dm6]	G	C	4.322e^-4	0.989	INTERGENIC
2L	12706781	2L_12706781_SNP [dm3] 2L_12706781_SNP [dm6]	A	T	4.325e^-4	0.989	UPSTREAM CG6180 DOWNSTREAM CG15484 & 1 other INTERGENIC
3R	26011590	3R_26011590_SNP [dm3] 3R_30185868_SNP [dm6]	C	T	4.330e^-4	0.989	SYNONYMOUS_CODING CG9747
2L	9293556	2L_9293556_SNP [dm3] 2L_9293556_SNP [dm6]	G	A	4.357e^-4	0.989	UTR_3_PRIME Ggamma30A DOWNSTREAM Ggamma30A
2L	5913517	2L_5913517_SNP [dm3] 2L_5913517_SNP [dm6]	A	G	4.365e^-4	0.989	INTRON bchs	TF binding site mE1_TFBS_cad
2R	7532647	2R_7532647_SNP [dm3] 2R_11645142_SNP [dm6]	T	G	4.372e^-4	0.989	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16298122	3L_16298122_SNP [dm3] 3L_16305022_SNP [dm6]	C	T	4.385e^-4	0.989	DOWNSTREAM CG13043 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4594106	3L_4594106_DEL [dm3] 3L_4594106_DEL [dm6]	GATTGG	G	4.387e^-4	0.989	UTR_3_PRIME Src64B DOWNSTREAM Src64B
2L	13329406	2L_13329406_SNP [dm3] 2L_13329406_SNP [dm6]	T	A	4.394e^-4	0.989	INTRON CG43778
3R	3969110	3R_3969110_SNP [dm3] 3R_8143388_SNP [dm6]	T	C	4.396e^-4	0.989	INTERGENIC
3R	18968993	3R_18968993_SNP [dm3] 3R_23143271_SNP [dm6]	G	T	4.404e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16909915	2R_16909915_SNP [dm3] 2R_21022410_SNP [dm6]	C	A	4.406e^-4	0.989	UTR_3_PRIME RIC-3 INTRON RIC-3
3R	26009448	3R_26009448_SNP [dm3] 3R_30183726_SNP [dm6]	T	G	4.410e^-4	0.989	DOWNSTREAM CR44262 INTERGENIC
2R	9693382	2R_9693382_SNP [dm3] 2R_13805877_SNP [dm6]	G	A	4.416e^-4	0.989	UTR_5_PRIME stj UPSTREAM stj DOWNSTREAM Cpr50Cb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3856742	2L_3856742_SNP [dm3] 2L_3856742_SNP [dm6]	T	C	4.416e^-4	0.989	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	7068522	3L_7068522_SNP [dm3] 3L_7075422_SNP [dm6]	G	A	4.433e^-4	0.989	UPSTREAM CG34030 INTRON CG8641
X	19343671	X_19343671_SNP [dm3] X_19449638_SNP [dm6]	C	G	4.450e^-4	0.989	INTRON kek5
3L	9345449	3L_9345449_SNP [dm3] 3L_9352349_SNP [dm6]	G	A	4.455e^-4	0.989	DOWNSTREAM PGRP-LF INTRON UGP
2R	18640483	2R_18640483_SNP [dm3] 2R_22752978_SNP [dm6]	C	A	4.463e^-4	0.989	INTRON CG42260
X	10179805	X_10179805_SNP [dm3] X_10285772_SNP [dm6]	A	C	4.463e^-4	0.989	INTRON alpha-Man-I
3R	23391753	3R_23391753_SNP [dm3] 3R_27566031_SNP [dm6]	T	C	4.466e^-4	0.989	SYNONYMOUS_CODING wdb	TF binding site mE1_TFBS_sens
2L	4347674	2L_4347674_SNP [dm3] 2L_4347674_SNP [dm6]	G	A	4.469e^-4	0.989	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19305983	3L_19305983_SNP [dm3] 3L_19312883_SNP [dm6]	T	C	4.488e^-4	0.989	INTRON pip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7538015	3L_7538015_SNP [dm3] 3L_7544915_SNP [dm6]	C	A	4.491e^-4	0.989	INTERGENIC
2L	10752032	2L_10752032_SNP [dm3] 2L_10752032_SNP [dm6]	A	T	4.492e^-4	0.989	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	9695826	2R_9695826_SNP [dm3] 2R_13808321_SNP [dm6]	C	T	4.502e^-4	0.989	INTRON stj
3L	1146549	3L_1146549_SNP [dm3] 3L_1146549_SNP [dm6]	T	C	4.518e^-4	0.989	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7416392	3R_7416392_SNP [dm3] 3R_11590670_SNP [dm6]	T	C	4.524e^-4	0.989	UTR_3_PRIME Jupiter UPSTREAM CG6791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11794599	2R_11794599_SNP [dm3] 2R_15907094_SNP [dm6]	A	T	4.533e^-4	0.989	INTRON sli
3L	17977857	3L_17977857_SNP [dm3] 3L_17984757_SNP [dm6]	G	A	4.536e^-4	0.989	INTRON Eip75B
2R	17947466	2R_17947466_SNP [dm3] 2R_22059961_SNP [dm6]	C	T	4.539e^-4	0.989	SYNONYMOUS_CODING CG13501 UPSTREAM Snp	TF binding site mE1_TFBS_chinmo
3L	3117436	3L_3117436_SNP [dm3] 3L_3117436_SNP [dm6]	G	A	4.548e^-4	0.989	DOWNSTREAM prominin-like INTRON prominin-like
X	16007444	X_16007444_SNP [dm3] X_16113411_SNP [dm6]	T	C	4.548e^-4	0.989	INTERGENIC
2R	16919727	2R_16919727_SNP [dm3] 2R_21032222_SNP [dm6]	C	T	4.552e^-4	0.989	INTERGENIC
3L	5473093	3L_5473093_SNP [dm3] 3L_5479993_SNP [dm6]	C	T	4.563e^-4	0.989	INTRON CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8545396	2R_8545396_SNP [dm3] 2R_12657891_SNP [dm6]	C	T	4.564e^-4	0.989	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
3R	4372618	3R_4372618_SNP [dm3] 3R_8546896_SNP [dm6]	A	C	4.568e^-4	0.989	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
2L	5567510	2L_5567510_INS [dm3] 2L_5567510_INS [dm6]	C	CTCTATAGCCC...	4.575e^-4	0.989	INTERGENIC
3R	4028466	3R_4028466_SNP [dm3] 3R_8202744_SNP [dm6]	G	C	4.584e^-4	0.989	DOWNSTREAM CR43303 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	1636639	3L_1636639_SNP [dm3] 3L_1636639_SNP [dm6]	T	C	4.589e^-4	0.989	INTRON nSyb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7534552	3L_7534552_SNP [dm3] 3L_7541452_SNP [dm6]	T	G	4.589e^-4	0.989	UPSTREAM CG32374 DOWNSTREAM CG32376 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15822684	2R_15822684_SNP [dm3] 2R_19935179_SNP [dm6]	A	G	4.594e^-4	0.989	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25786156	3R_25786156_SNP [dm3] 3R_29960434_SNP [dm6]	G	A	4.595e^-4	0.989	INTRON TkR99D
3L	9344137	3L_9344137_SNP [dm3] 3L_9351037_SNP [dm6]	G	A	4.597e^-4	0.989	NON_SYNONYMOUS_CODING PGRP-LF UTR_3_PRIME UGP DOWNSTREAM UGP
3R	12343755	3R_12343755_SNP [dm3] 3R_16518033_SNP [dm6]	G	T	4.601e^-4	0.989	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16918222	2R_16918222_SNP [dm3] 2R_21030717_SNP [dm6]	T	C	4.602e^-4	0.989	UPSTREAM CR45148 INTERGENIC
2R	12271111	2R_12271111_SNP [dm3] 2R_16383606_SNP [dm6]	T	C	4.603e^-4	0.989	UTR_3_PRIME CG43187
X	10344841	X_10344841_SNP [dm3] X_10450808_SNP [dm6]	A	T	4.609e^-4	0.989	INTRON CG32683
3R	8720041	3R_8720041_SNP [dm3] 3R_12894319_SNP [dm6]	G	T	4.614e^-4	0.989	EXON CR33929
2R	9693132	2R_9693132_SNP [dm3] 2R_13805627_SNP [dm6]	G	A	4.615e^-4	0.989	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12729425	3L_12729425_SNP [dm3] 3L_12736325_SNP [dm6]	C	G	4.620e^-4	0.989	NON_SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA
X	5589176	X_5589176_SNP [dm3] X_5695143_SNP [dm6]	A	G	4.623e^-4	0.989	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	13383307	2R_13383307_SNP [dm3] 2R_17495802_SNP [dm6]	C	T	4.626e^-4	0.989	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
X	17149893	X_17149893_SNP [dm3] X_17255860_SNP [dm6]	C	T	4.635e^-4	0.989	INTRON f
2L	9695166	2L_9695166_SNP [dm3] 2L_9695166_SNP [dm6]	T	A	4.646e^-4	0.989	INTRON Pka-C1
2R	14182522	2R_14182522_SNP [dm3] 2R_18295017_SNP [dm6]	C	A	4.648e^-4	0.989	UPSTREAM CG18537 DOWNSTREAM CG14502 INTRON sbb & 1 other
2R	8229825	2R_8229825_SNP [dm3] 2R_12342320_SNP [dm6]	T	A	4.668e^-4	0.989	UPSTREAM CG8839 INTRON CG8839
3R	26009170	3R_26009170_SNP [dm3] 3R_30183448_SNP [dm6]	C	G	4.668e^-4	0.989	DOWNSTREAM CR44262 INTERGENIC
X	19789683	X_19789683_SNP [dm3] X_19895650_SNP [dm6]	T	C	4.676e^-4	0.989	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7410489	3R_7410489_SNP [dm3] 3R_11584767_SNP [dm6]	T	A	4.677e^-4	0.989	UTR_3_PRIME wkd DOWNSTREAM CG6791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4196336	2L_4196336_SNP [dm3] 2L_4196336_SNP [dm6]	A	C	4.678e^-4	0.989	INTRON CG3714	TF binding site mE1_TFBS_inv
3L	15462902	3L_15462902_SNP [dm3] 3L_15469802_SNP [dm6]	G	A	4.679e^-4	0.989	INTERGENIC
X	8240342	X_8240342_SNP [dm3] X_8346309_SNP [dm6]	A	T	4.687e^-4	0.989	INTRON nAChRalpha3
2R	15823928	2R_15823928_SNP [dm3] 2R_19936423_SNP [dm6]	C	T	4.691e^-4	0.989	INTERGENIC
2R	10997510	2R_10997510_SNP [dm3] 2R_15110005_SNP [dm6]	C	T	4.692e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15823666	2R_15823666_SNP [dm3] 2R_19936161_SNP [dm6]	C	T	4.692e^-4	0.989	INTERGENIC
2L	9286767	2L_9286767_SNP [dm3] 2L_9286767_SNP [dm6]	C	A	4.699e^-4	0.989	INTRON Ggamma30A
X	13249864	X_13249864_SNP [dm3] X_13355831_SNP [dm6]	C	G	4.701e^-4	0.989	INTERGENIC
3L	5877553	3L_5877553_SNP [dm3] 3L_5884453_SNP [dm6]	A	C	4.701e^-4	0.989	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3887960	2L_3887960_SNP [dm3] 2L_3887960_SNP [dm6]	T	A	4.703e^-4	0.989	INTRON capu
X	925287	X_925287_SNP [dm3] X_1031254_SNP [dm6]	G	A	4.707e^-4	0.989	NON_SYNONYMOUS_CODING CG33082 UPSTREAM CG14630 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	15152075	3L_15152075_DEL [dm3] 3L_15158975_DEL [dm6]	AAATTGATCAATTAAAATCC...	A	4.709e^-4	0.989	UPSTREAM Prp31 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	12751255	3R_12751255_DEL [dm3] 3R_16925533_DEL [dm6]	AA	A	4.728e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4949057	3L_4949057_SNP [dm3] 3L_4949057_SNP [dm6]	C	T	4.728e^-4	0.989	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6738693	2R_6738693_SNP [dm3] 2R_10851188_SNP [dm6]	T	C	4.731e^-4	0.989	INTRON CG30015
X	20774353	X_20774353_SNP [dm3] X_20903326_SNP [dm6]	C	A	4.733e^-4	0.989	INTRON shakB
X	10277714	X_10277714_SNP [dm3] X_10383681_SNP [dm6]	T	A	4.748e^-4	0.989	UTR_3_PRIME Psf3 DOWNSTREAM Psf3 & 1 other
3L	17994485	3L_17994485_SNP [dm3] 3L_18001385_SNP [dm6]	T	A	4.762e^-4	0.989	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9693373	2R_9693373_SNP [dm3] 2R_13805868_SNP [dm6]	T	C	4.763e^-4	0.989	UTR_5_PRIME stj UPSTREAM stj DOWNSTREAM Cpr50Cb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9945302	2L_9945302_DEL [dm3] 2L_9945302_DEL [dm6]	AA	A	4.765e^-4	0.989	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11903352	3R_11903352_INS [dm3] 3R_16077630_INS [dm6]	A	AGTGCG	4.770e^-4	0.989	INTRON Mhcl
2R	16916927	2R_16916927_SNP [dm3] 2R_21029422_SNP [dm6]	T	C	4.773e^-4	0.989	EXON CR45148
3L	10610910	3L_10610910_SNP [dm3] 3L_10617810_SNP [dm6]	G	T	4.774e^-4	0.989	INTERGENIC
3L	1646876	3L_1646876_SNP [dm3] 3L_1646876_SNP [dm6]	A	G	4.787e^-4	0.989	SYNONYMOUS_CODING CG17249 UPSTREAM Bro DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16919307	2R_16919307_SNP [dm3] 2R_21031802_SNP [dm6]	A	G	4.794e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3250279	X_3250279_DEL [dm3] X_3356246_DEL [dm6]	TT	T	4.823e^-4	0.989	INTERGENIC
2R	12691178	2R_12691178_SNP [dm3] 2R_16803673_SNP [dm6]	T	G	4.825e^-4	0.989	INTERGENIC
3L	12591671	3L_12591671_INS [dm3] 3L_12598571_INS [dm6]	A	AT	4.831e^-4	0.989	INTERGENIC
3L	3421577	3L_3421577_SNP [dm3] 3L_3421577_SNP [dm6]	A	T	4.833e^-4	0.989	INTRON sty
3L	3421578	3L_3421578_SNP [dm3] 3L_3421578_SNP [dm6]	G	A	4.833e^-4	0.989	INTRON sty
3L	17575804	3L_17575804_SNP [dm3] 3L_17582704_SNP [dm6]	A	T	4.835e^-4	0.989	INTRON Eip74EF
2L	7866520	2L_7866520_SNP [dm3] 2L_7866520_SNP [dm6]	A	C	4.838e^-4	0.989	INTRON Proc
3L	1412465	3L_1412465_SNP [dm3] 3L_1412465_SNP [dm6]	T	G	4.856e^-4	0.989	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3R	3263	3R_3263_SNP [dm3] 3R_4177541_SNP [dm6]	A	G	4.859e^-4	0.989	INTRON CG12581	TF binding site BDTNP1_TFBS_dl
X	5380695	X_5380695_SNP [dm3] X_5486662_SNP [dm6]	A	G	4.862e^-4	0.989	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26860047	3R_26860047_SNP [dm3] 3R_31034325_SNP [dm6]	G	C	4.862e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14564735	3L_14564735_SNP [dm3] 3L_14571635_SNP [dm6]	A	C	4.871e^-4	0.989	INTERGENIC
3L	10622191	3L_10622191_SNP [dm3] 3L_10629091_SNP [dm6]	C	A	4.875e^-4	0.989	UTR_3_PRIME CG42536 UPSTREAM CG14151 DOWNSTREAM CG42535
2L	17589777	2L_17589777_SNP [dm3] 2L_17589777_SNP [dm6]	G	T	4.877e^-4	0.989	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11409896	2R_11409896_SNP [dm3] 2R_15522391_SNP [dm6]	T	G	4.878e^-4	0.989	INTRON Khc-73
2L	9413546	2L_9413546_SNP [dm3] 2L_9413546_SNP [dm6]	G	A	4.887e^-4	0.989	INTRON Shawl
2R	9693231	2R_9693231_SNP [dm3] 2R_13805726_SNP [dm6]	T	A	4.890e^-4	0.989	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7015691	2R_7015691_SNP [dm3] 2R_11128186_SNP [dm6]	A	C	4.915e^-4	0.989	INTERGENIC
2R	18597005	2R_18597005_SNP [dm3] 2R_22709500_SNP [dm6]	C	G	4.916e^-4	0.989	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275 UPSTREAM CR43735
3R	7416097	3R_7416097_SNP [dm3] 3R_11590375_SNP [dm6]	A	G	4.919e^-4	0.989	UPSTREAM CG6791 DOWNSTREAM Jupiter INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9394212	3R_9394212_DEL [dm3] 3R_13568490_DEL [dm6]	GGGATGACGGAATGACGAAA...	G	4.919e^-4	0.989	INTERGENIC
2R	17282510	2R_17282510_SNP [dm3] 2R_21395005_SNP [dm6]	A	G	4.922e^-4	0.989	SYNONYMOUS_CODING Sdc UTR_5_PRIME Sdc
3L	2893129	3L_2893129_SNP [dm3] 3L_2893129_SNP [dm6]	A	G	4.931e^-4	0.989	UPSTREAM spz5 INTERGENIC
3R	13101838	3R_13101838_SNP [dm3] 3R_17276116_SNP [dm6]	C	T	4.933e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12068363	3L_12068363_SNP [dm3] 3L_12075263_SNP [dm6]	C	T	4.947e^-4	0.989	INTRON Sema-5c
2R	8197322	2R_8197322_SNP [dm3] 2R_12309817_SNP [dm6]	C	G	4.949e^-4	0.989	NON_SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
3L	13341985	3L_13341985_SNP [dm3] 3L_13348885_SNP [dm6]	A	T	4.953e^-4	0.989	UPSTREAM CG17687 INTERGENIC
2L	16495719	2L_16495719_SNP [dm3] 2L_16495719_SNP [dm6]	A	G	4.955e^-4	0.989	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	917297	X_917297_SNP [dm3] X_1023264_SNP [dm6]	G	A	4.958e^-4	0.989	INTRON su_w[a]_ & 2 others
3R	27468237	3R_27468237_SNP [dm3] 3R_31642515_SNP [dm6]	A	G	4.960e^-4	0.989	INTRON kek6
3R	20514364	3R_20514364_SNP [dm3] 3R_24688642_SNP [dm6]	T	A	4.961e^-4	0.989	INTRON slo
X	387227	X_387227_SNP [dm3] X_493194_SNP [dm6]	A	G	4.961e^-4	0.989	UPSTREAM CG17896 INTRON CG17896	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19446579	X_19446579_INS [dm3] X_19552546_INS [dm6]	C	CG	4.967e^-4	0.989	DOWNSTREAM mir-973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16919419	2R_16919419_SNP [dm3] 2R_21031914_SNP [dm6]	C	T	4.973e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7866526	2L_7866526_SNP [dm3] 2L_7866526_SNP [dm6]	A	G	4.986e^-4	0.989	INTRON Proc
X	6724142	X_6724142_SNP [dm3] X_6830109_SNP [dm6]	C	T	4.997e^-4	0.989	SYNONYMOUS_CODING nonC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26865824	3R_26865824_SNP [dm3] 3R_31040102_SNP [dm6]	T	G	4.999e^-4	0.989	START_GAINED CanA1 UTR_5_PRIME CanA1	TF binding site mE1_TFBS_sbb
3L	10838495	3L_10838495_SNP [dm3] 3L_10845395_SNP [dm6]	A	C	5.005e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10838504	3L_10838504_SNP [dm3] 3L_10845404_SNP [dm6]	G	A	5.005e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12026398	2L_12026398_SNP [dm3] 2L_12026398_SNP [dm6]	T	C	5.009e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6724780	3L_6724780_SNP [dm3] 3L_6731680_SNP [dm6]	G	A	5.020e^-4	0.989	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19490732	2R_19490732_SNP [dm3] 2R_23603209_SNP [dm6]	A	T	5.025e^-4	0.989	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7842259	3R_7842259_SNP [dm3] 3R_12016537_SNP [dm6]	A	G	5.039e^-4	0.989	UPSTREAM Spt3 INTRON CG3313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	6286143	2R_6286143_SNP [dm3] 2R_10398638_SNP [dm6]	G	C	5.044e^-4	0.989	INTRON CG42732
X	2346179	X_2346179_SNP [dm3] X_2452146_SNP [dm6]	T	C	5.046e^-4	0.989	SPLICE_SITE_REGION boi UTR_5_PRIME boi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15823956	2R_15823956_SNP [dm3] 2R_19936451_SNP [dm6]	C	G	5.050e^-4	0.989	INTERGENIC
3L	16278412	3L_16278412_SNP [dm3] 3L_16285312_SNP [dm6]	G	T	5.051e^-4	0.989	INTRON CG13047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4938630	X_4938630_SNP [dm3] X_5044597_SNP [dm6]	G	T	5.052e^-4	0.989	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13163427	2R_13163427_SNP [dm3] 2R_17275922_SNP [dm6]	G	A	5.057e^-4	0.989	SYNONYMOUS_CODING mbl	TF binding site mE1_TFBS_HSA
3R	20474441	3R_20474441_SNP [dm3] 3R_24648719_SNP [dm6]	A	C	5.058e^-4	0.989	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3970065	2L_3970065_SNP [dm3] 2L_3970065_SNP [dm6]	A	G	5.061e^-4	0.989	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12035551	2R_12035551_SNP [dm3] 2R_16148046_SNP [dm6]	G	A	5.062e^-4	0.989	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	370950	X_370950_SNP [dm3] X_476917_SNP [dm6]	G	T	5.063e^-4	0.989	UPSTREAM CG13373 & 1 other EXON CR18275	TF binding site BDTNP1_TFBS_dl
X	19903330	X_19903330_SNP [dm3] X_20009297_SNP [dm6]	G	A	5.064e^-4	0.989	INTRON Dop2R
2L	6976337	2L_6976337_SNP [dm3] 2L_6976337_SNP [dm6]	A	C	5.066e^-4	0.989	INTRON uif	TF binding site mE1_TFBS_cad
3L	7005461	3L_7005461_DEL [dm3] 3L_7012361_DEL [dm6]	TA	T	5.070e^-4	0.989	INTRON Mp	TF binding site mE1_TFBS_bab1
2R	16915343	2R_16915343_SNP [dm3] 2R_21027838_SNP [dm6]	G	T	5.070e^-4	0.989	INTERGENIC
2L	15420824	2L_15420824_SNP [dm3] 2L_15420824_SNP [dm6]	G	T	5.075e^-4	0.989	INTERGENIC
3L	10163391	3L_10163391_SNP [dm3] 3L_10170291_SNP [dm6]	C	T	5.075e^-4	0.989	INTRON dpr10
3R	18266920	3R_18266920_SNP [dm3] 3R_22441198_SNP [dm6]	G	A	5.077e^-4	0.989	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
3R	26860525	3R_26860525_SNP [dm3] 3R_31034803_SNP [dm6]	C	A	5.077e^-4	0.989	UPSTREAM CG33773 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12050603	2L_12050603_SNP [dm3] 2L_12050603_SNP [dm6]	G	A	5.080e^-4	0.989	NON_SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11903321	3R_11903321_SNP [dm3] 3R_16077599_SNP [dm6]	T	C	5.089e^-4	0.989	INTRON Mhcl
2R	17400703	2R_17400703_DEL [dm3] 2R_21513198_DEL [dm6]	CC	C	5.107e^-4	0.989	DOWNSTREAM MESK2 INTRON MESK2
2L	9288196	2L_9288196_SNP [dm3] 2L_9288196_SNP [dm6]	T	C	5.109e^-4	0.989	INTRON Ggamma30A
2L	5569744	2L_5569744_SNP [dm3] 2L_5569744_SNP [dm6]	C	A	5.118e^-4	0.989	INTERGENIC
3R	23265426	3R_23265426_SNP [dm3] 3R_27439704_SNP [dm6]	G	A	5.123e^-4	0.989	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_dl
2R	3735275	2R_3735275_SNP [dm3] 2R_7847770_SNP [dm6]	T	G	5.127e^-4	0.989	UPSTREAM Dgk INTRON Dgk
2R	14934381	2R_14934381_INS [dm3] 2R_19046876_INS [dm6]	G	GACG	5.140e^-4	0.989	INTERGENIC
X	16007417	X_16007417_DEL [dm3] X_16113384_DEL [dm6]	TATT	C	5.141e^-4	0.989	INTERGENIC
X	7315291	X_7315291_SNP [dm3] X_7421258_SNP [dm6]	A	T	5.143e^-4	0.989	INTRON CG9657
3L	6824260	3L_6824260_DEL [dm3] 3L_6831160_DEL [dm6]	AA	A	5.155e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10997506	2R_10997506_SNP [dm3] 2R_15110001_SNP [dm6]	A	G	5.158e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17933005	2L_17933005_SNP [dm3] 2L_17933005_SNP [dm6]	A	G	5.168e^-4	0.989	INTERGENIC
3R	26863706	3R_26863706_INS [dm3] 3R_31037984_INS [dm6]	T	TGT	5.183e^-4	0.989	INTERGENIC
3L	2393695	3L_2393695_SNP [dm3] 3L_2393695_SNP [dm6]	A	G	5.184e^-4	0.989	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10893105	2L_10893105_SNP [dm3] 2L_10893105_SNP [dm6]	C	T	5.190e^-4	0.989	INTERGENIC
2R	6739167	2R_6739167_SNP [dm3] 2R_10851662_SNP [dm6]	C	G	5.191e^-4	0.989	INTRON CG30015
3R	7711962	3R_7711962_SNP [dm3] 3R_11886240_SNP [dm6]	C	T	5.193e^-4	0.989	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	15401226	2R_15401226_SNP [dm3] 2R_19513721_SNP [dm6]	G	A	5.195e^-4	0.989	UPSTREAM Ir56d INTERGENIC
2L	7753641	2L_7753641_SNP [dm3] 2L_7753641_SNP [dm6]	T	A	5.196e^-4	0.989	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2R	3730331	2R_3730331_INS [dm3] 2R_7842826_INS [dm6]	A	AATTAAATTAATTA...	5.200e^-4	0.989	INTRON Dgk
2R	15828677	2R_15828677_SNP [dm3] 2R_19941172_SNP [dm6]	T	C	5.202e^-4	0.989	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	384683	X_384683_SNP [dm3] X_490650_SNP [dm6]	A	C	5.203e^-4	0.989	UTR_3_PRIME CG3156 DOWNSTREAM CG17896
2R	18502579	2R_18502579_SNP [dm3] 2R_22615074_SNP [dm6]	T	C	5.206e^-4	0.989	INTRON CG33143
2L	12713492	2L_12713492_SNP [dm3] 2L_12713492_SNP [dm6]	T	A	5.206e^-4	0.989	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787 DOWNSTREAM CG5792
2R	20097842	2R_20097842_SNP [dm3] 2R_24210319_SNP [dm6]	G	A	5.210e^-4	0.989	INTERGENIC
2R	12038056	2R_12038056_SNP [dm3] 2R_16150551_SNP [dm6]	A	G	5.211e^-4	0.989	START_GAINED lbk UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10659009	3L_10659009_SNP [dm3] 3L_10665909_SNP [dm6]	G	A	5.212e^-4	0.989	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7067386	2R_7067386_SNP [dm3] 2R_11179881_SNP [dm6]	C	T	5.215e^-4	0.989	INTRON shn
3L	513089	3L_513089_DEL [dm3] 3L_513089_DEL [dm6]	GATGCGCATTTTCTTGC...	G	5.215e^-4	0.989	INTRON klar
2R	6489095	2R_6489095_SNP [dm3] 2R_10601590_SNP [dm6]	C	T	5.217e^-4	0.989	INTRON psq
3L	5521965	3L_5521965_SNP [dm3] 3L_5528865_SNP [dm6]	G	A	5.223e^-4	0.989	INTRON Lkr
X	4634312	X_4634312_SNP [dm3] X_4740279_SNP [dm6]	T	C	5.230e^-4	0.989	INTERGENIC
3R	23265359	3R_23265359_SNP [dm3] 3R_27439637_SNP [dm6]	A	G	5.241e^-4	0.989	UPSTREAM CG43447 INTRON CG44290
2L	5443303	2L_5443303_SNP [dm3] 2L_5443303_SNP [dm6]	A	C	5.243e^-4	0.989	INTERGENIC
2R	8276711	2R_8276711_INS [dm3] 2R_12389206_INS [dm6]	T	TATA	5.243e^-4	0.989	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8276715	2R_8276715_MNP [dm3] 2R_12389210_MNP [dm6]	GTG	TAA	5.243e^-4	0.989	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2697169	2L_2697169_SNP [dm3] 2L_2697169_SNP [dm6]	G	A	5.266e^-4	0.989	UPSTREAM CG15398 INTRON CG31690
X	10297181	X_10297181_SNP [dm3] X_10403148_SNP [dm6]	A	G	5.271e^-4	0.989	INTRON flw
3L	1771048	3L_1771048_SNP [dm3] 3L_1771048_SNP [dm6]	G	C	5.280e^-4	0.989	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG13933	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16702917	2R_16702917_SNP [dm3] 2R_20815412_SNP [dm6]	T	C	5.299e^-4	0.989	INTERGENIC
3L	14565964	3L_14565964_SNP [dm3] 3L_14572864_SNP [dm6]	A	T	5.305e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18711376	2R_18711376_SNP [dm3] 2R_22823853_SNP [dm6]	G	T	5.309e^-4	0.989	INTRON CG42284
3L	8380756	3L_8380756_SNP [dm3] 3L_8387656_SNP [dm6]	A	G	5.309e^-4	0.989	SYNONYMOUS_CODING ImpE1
2L	1284997	2L_1284997_INS [dm3] 2L_1284997_INS [dm6]	T	TGATTGAT	5.310e^-4	0.989	INTRON robo3
2L	11681926	2L_11681926_SNP [dm3] 2L_11681926_SNP [dm6]	T	C	5.326e^-4	0.989	INTERGENIC
3R	11719266	3R_11719266_SNP [dm3] 3R_15893544_SNP [dm6]	A	G	5.326e^-4	0.989	INTRON CG14877
3L	6855212	3L_6855212_SNP [dm3] 3L_6862112_SNP [dm6]	T	C	5.341e^-4	0.989	INTERGENIC
3L	2254754	3L_2254754_SNP [dm3] 3L_2254754_SNP [dm6]	T	G	5.351e^-4	0.989	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	7372928	2L_7372928_SNP [dm3] 2L_7372928_SNP [dm6]	A	G	5.361e^-4	0.989	INTRON Wnt10	TF binding site mE1_TFBS_cad
2R	10997499	2R_10997499_SNP [dm3] 2R_15109994_SNP [dm6]	A	C	5.367e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9847525	2L_9847525_SNP [dm3] 2L_9847525_SNP [dm6]	A	C	5.367e^-4	0.989	UPSTREAM CR43766 INTRON nAChRalpha6
3L	12064018	3L_12064018_SNP [dm3] 3L_12070918_SNP [dm6]	A	G	5.368e^-4	0.989	SYNONYMOUS_CODING Sema-5c
2L	11890597	2L_11890597_SNP [dm3] 2L_11890597_SNP [dm6]	A	G	5.368e^-4	0.989	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1093264	3L_1093264_SNP [dm3] 3L_1093264_SNP [dm6]	C	T	5.372e^-4	0.989	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	9285727	2L_9285727_SNP [dm3] 2L_9285727_SNP [dm6]	T	C	5.377e^-4	0.989	INTRON Ggamma30A
3L	8910604	3L_8910604_SNP [dm3] 3L_8917504_SNP [dm6]	T	A	5.377e^-4	0.989	INTRON Tsp66E
2L	13875383	2L_13875383_SNP [dm3] 2L_13875383_SNP [dm6]	T	G	5.380e^-4	0.989	INTRON CenG1A
3R	19560928	3R_19560928_SNP [dm3] 3R_23735206_SNP [dm6]	G	T	5.382e^-4	0.989	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25672476	3R_25672476_SNP [dm3] 3R_29846754_SNP [dm6]	T	C	5.387e^-4	0.989	SYNONYMOUS_CODING Cad99C
2L	14412874	2L_14412874_SNP [dm3] 2L_14412874_SNP [dm6]	T	C	5.387e^-4	0.989	INTERGENIC
2L	7947487	2L_7947487_SNP [dm3] 2L_7947487_SNP [dm6]	G	A	5.390e^-4	0.989	INTRON Snoo
2L	12325609	2L_12325609_SNP [dm3] 2L_12325609_SNP [dm6]	T	A	5.394e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.077e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1844 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10817209	2R_10817209_SNP [dm3] 2R_14929704_SNP [dm6]	T	A	1.666e^-7	0.193	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
3L	4015923	3L_4015923_SNP [dm3] 3L_4015923_SNP [dm6]	T	C	2.458e^-7	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	12261227	2R_12261227_DEL [dm3] 2R_16373722_DEL [dm6]	CAGCTAAC	C	3.571e^-7	0.193	INTERGENIC
3L	1469004	3L_1469004_SNP [dm3] 3L_1469004_SNP [dm6]	T	C	5.024e^-7	0.193	DOWNSTREAM rho INTRON Ptp61F
2R	10817197	2R_10817197_SNP [dm3] 2R_14929692_SNP [dm6]	G	C	5.148e^-7	0.193	DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10817219	2R_10817219_SNP [dm3] 2R_14929714_SNP [dm6]	G	T	8.068e^-7	0.223	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
3R	8527545	3R_8527545_SNP [dm3] 3R_12701823_SNP [dm6]	C	T	8.307e^-7	0.223	INTRON Past1
2R	10817230	2R_10817230_SNP [dm3] 2R_14929725_SNP [dm6]	A	T	1.712e^-6	0.401	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
2R	10556696	2R_10556696_SNP [dm3] 2R_14669191_SNP [dm6]	T	C	2.985e^-6	0.558	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
X	5580393	X_5580393_SNP [dm3] X_5686360_SNP [dm6]	A	G	3.174e^-6	0.558	NON_SYNONYMOUS_CODING CG3160
3L	9629344	3L_9629344_SNP [dm3] 3L_9636244_SNP [dm6]	G	C	3.272e^-6	0.558	INTRON fry	TF binding site mE1_TFBS_cad
3R	7711962	3R_7711962_SNP [dm3] 3R_11886240_SNP [dm6]	C	T	4.171e^-6	0.603	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	1469020	3L_1469020_SNP [dm3] 3L_1469020_SNP [dm6]	G	C	4.179e^-6	0.603	DOWNSTREAM rho INTRON Ptp61F
2R	10817190	2R_10817190_SNP [dm3] 2R_14929685_SNP [dm6]	C	A	4.714e^-6	0.622	DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9542063	3L_9542063_DEL [dm3] 3L_9548963_DEL [dm6]	ACGTCCA	A	4.991e^-6	0.622	INTRON CG42673
3L	9538041	3L_9538041_SNP [dm3] 3L_9544941_SNP [dm6]	C	A	5.308e^-6	0.622	UPSTREAM Ir67a INTERGENIC
2R	10556702	2R_10556702_SNP [dm3] 2R_14669197_SNP [dm6]	T	C	5.707e^-6	0.63	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
3R	7713017	3R_7713017_SNP [dm3] 3R_11887295_SNP [dm6]	C	T	6.288e^-6	0.655	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	7129938	2R_7129938_SNP [dm3] 2R_11242433_SNP [dm6]	T	G	7.944e^-6	0.782	UPSTREAM Listericin INTERGENIC
2R	10817231	2R_10817231_DEL [dm3] 2R_14929726_DEL [dm6]	TTTG	T	8.652e^-6	0.782	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
3R	8527576	3R_8527576_SNP [dm3] 3R_12701854_SNP [dm6]	T	C	8.760e^-6	0.782	INTRON Past1	TF binding site mE1_TFBS_HSA
3L	9273899	3L_9273899_SNP [dm3] 3L_9280799_SNP [dm6]	A	G	1.060e^-5	0.864	INTRON GluRIB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7518763	2L_7518763_SNP [dm3] 2L_7518763_SNP [dm6]	C	T	1.097e^-5	0.864	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8542084	3R_8542084_SNP [dm3] 3R_12716362_SNP [dm6]	G	A	1.146e^-5	0.864	INTRON Men
3R	25429926	3R_25429926_SNP [dm3] 3R_29604204_SNP [dm6]	G	T	1.152e^-5	0.864	INTRON alph
3R	7713233	3R_7713233_DEL [dm3] 3R_11887511_DEL [dm6]	TG	T	1.272e^-5	0.911	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	21940341	X_21940341_SNP [dm3] X_22538505_SNP [dm6]	A	C	1.312e^-5	0.911	SYNONYMOUS_CODING CG17598 INTRON CG17600	TF binding site mE1_TFBS_chinmo
2R	15824248	2R_15824248_SNP [dm3] 2R_19936743_SNP [dm6]	G	A	1.404e^-5	0.941	INTERGENIC
2R	4013430	2R_4013430_SNP [dm3] 2R_8125925_SNP [dm6]	C	G	1.587e^-5	0.96	NON_SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	15824847	2R_15824847_DEL [dm3] 2R_19937342_DEL [dm6]	AA	A	1.654e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4460996	2R_4460996_SNP [dm3] 2R_8573491_SNP [dm6]	C	G	1.690e^-5	0.96	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
2R	10698768	2R_10698768_SNP [dm3] 2R_14811263_SNP [dm6]	T	G	1.797e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10699151	2R_10699151_SNP [dm3] 2R_14811646_SNP [dm6]	C	G	1.834e^-5	0.96	INTERGENIC
3R	19558502	3R_19558502_SNP [dm3] 3R_23732780_SNP [dm6]	A	T	1.835e^-5	0.96	UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4157292	2R_4157292_SNP [dm3] 2R_8269787_SNP [dm6]	C	T	2.065e^-5	0.96	UPSTREAM CG30371 INTERGENIC
3R	7713138	3R_7713138_SNP [dm3] 3R_11887416_SNP [dm6]	A	C	2.098e^-5	0.96	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	12265234	3R_12265234_SNP [dm3] 3R_16439512_SNP [dm6]	A	G	2.126e^-5	0.96	INTRON ema	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7713193	3R_7713193_SNP [dm3] 3R_11887471_SNP [dm6]	T	A	2.267e^-5	0.96	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	10707643	2R_10707643_SNP [dm3] 2R_14820138_SNP [dm6]	T	G	2.284e^-5	0.96	UPSTREAM CG10202 INTERGENIC
3R	18503662	3R_18503662_SNP [dm3] 3R_22677940_SNP [dm6]	C	G	2.322e^-5	0.96	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11740837	2R_11740837_SNP [dm3] 2R_15853332_SNP [dm6]	C	A	2.325e^-5	0.96	UTR_3_PRIME tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7711971	3R_7711971_SNP [dm3] 3R_11886249_SNP [dm6]	G	A	2.325e^-5	0.96	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	18976349	2R_18976349_SNP [dm3] 2R_23088826_SNP [dm6]	A	T	2.372e^-5	0.96	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19298794	X_19298794_SNP [dm3] X_19404761_SNP [dm6]	T	C	2.376e^-5	0.96	INTRON kek5
3L	8032660	3L_8032660_SNP [dm3] 3L_8039560_SNP [dm6]	C	G	2.386e^-5	0.96	INTRON nmo	TF binding site mE1_TFBS_inv
2R	12808007	2R_12808007_SNP [dm3] 2R_16920502_SNP [dm6]	C	T	2.496e^-5	0.96	INTERGENIC
X	3522638	X_3522638_SNP [dm3] X_3628605_SNP [dm6]	G	A	2.522e^-5	0.96	INTRON AstA-R1
3R	21456388	3R_21456388_SNP [dm3] 3R_25630666_SNP [dm6]	G	T	2.542e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15824751	2R_15824751_SNP [dm3] 2R_19937246_SNP [dm6]	G	A	2.567e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8240342	X_8240342_SNP [dm3] X_8346309_SNP [dm6]	A	T	2.661e^-5	0.96	INTRON nAChRalpha3
3L	21377068	3L_21377068_SNP [dm3] 3L_21383968_SNP [dm6]	G	C	2.716e^-5	0.96	INTRON rgn
2L	13554434	2L_13554434_DEL [dm3] 2L_13554434_DEL [dm6]	AAAGTTAGCCA...	A	2.783e^-5	0.96	INTRON kuz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11100476	X_11100476_SNP [dm3] X_11206443_SNP [dm6]	A	G	2.832e^-5	0.96	INTERGENIC
X	4462597	X_4462597_SNP [dm3] X_4568564_SNP [dm6]	A	T	2.899e^-5	0.96	INTRON CR32773
3L	2692438	3L_2692438_SNP [dm3] 3L_2692438_SNP [dm6]	T	C	2.905e^-5	0.96	INTRON Fife
2R	9546610	2R_9546610_SNP [dm3] 2R_13659105_SNP [dm6]	A	C	2.906e^-5	0.96	INTRON fas
3L	4415257	3L_4415257_SNP [dm3] 3L_4415257_SNP [dm6]	C	A	3.019e^-5	0.96	INTRON DOR
3L	7214353	3L_7214353_SNP [dm3] 3L_7221253_SNP [dm6]	C	T	3.025e^-5	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9521312	3L_9521312_SNP [dm3] 3L_9528212_SNP [dm6]	C	T	3.092e^-5	0.96	UPSTREAM Or67a INTERGENIC
3L	9518928	3L_9518928_SNP [dm3] 3L_9525828_SNP [dm6]	G	A	3.094e^-5	0.96	UPSTREAM CG33700 INTERGENIC
3L	10162895	3L_10162895_SNP [dm3] 3L_10169795_SNP [dm6]	G	A	3.182e^-5	0.96	INTRON dpr10
3R	2813949	3R_2813949_SNP [dm3] 3R_6988227_SNP [dm6]	C	T	3.192e^-5	0.96	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18266920	3R_18266920_SNP [dm3] 3R_22441198_SNP [dm6]	G	A	3.288e^-5	0.96	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
2R	10557801	2R_10557801_SNP [dm3] 2R_14670296_SNP [dm6]	C	T	3.324e^-5	0.96	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
3L	8828921	3L_8828921_SNP [dm3] 3L_8835821_SNP [dm6]	C	G	3.441e^-5	0.96	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
2R	14189418	2R_14189418_SNP [dm3] 2R_18301913_SNP [dm6]	C	T	3.490e^-5	0.96	INTRON sbb
3R	9999082	3R_9999082_SNP [dm3] 3R_14173360_SNP [dm6]	T	G	3.502e^-5	0.96	UTR_3_PRIME Dop1R1
3R	7713065	3R_7713065_DEL [dm3] 3R_11887343_DEL [dm6]	CATATAATA	C	3.519e^-5	0.96	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	2516936	3R_2516936_SNP [dm3] 3R_6691214_SNP [dm6]	A	G	3.566e^-5	0.96	SYNONYMOUS_CODING Ccp84Ae UPSTREAM Ccp84Af
2R	4273084	2R_4273084_SNP [dm3] 2R_8385579_SNP [dm6]	G	A	3.597e^-5	0.96	INTRON pdm3
3L	9518553	3L_9518553_SNP [dm3] 3L_9525453_SNP [dm6]	G	A	3.766e^-5	0.96	START_GAINED CG33700 UTR_5_PRIME CG33700
3R	18503660	3R_18503660_SNP [dm3] 3R_22677938_SNP [dm6]	C	T	3.777e^-5	0.96	NON_SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1664046	2L_1664046_SNP [dm3] 2L_1664046_SNP [dm6]	T	C	3.816e^-5	0.96	INTRON chinmo
3R	19560557	3R_19560557_INS [dm3] 3R_23734835_INS [dm6]	A	AA	3.850e^-5	0.96	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4460951	2R_4460951_SNP [dm3] 2R_8573446_SNP [dm6]	G	A	3.876e^-5	0.96	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
3L	1748902	3L_1748902_SNP [dm3] 3L_1748902_SNP [dm6]	C	T	3.955e^-5	0.96	UTR_5_PRIME CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15379458	3R_15379458_SNP [dm3] 3R_19553736_SNP [dm6]	C	T	4.050e^-5	0.96	INTRON Dys
X	12459620	X_12459620_SNP [dm3] X_12565587_SNP [dm6]	C	A	4.114e^-5	0.96	UTR_5_PRIME CG43921	TF binding site mE1_TFBS_kn
3L	9521433	3L_9521433_SNP [dm3] 3L_9528333_SNP [dm6]	G	T	4.116e^-5	0.96	UPSTREAM Or67a INTERGENIC
3L	5370494	3L_5370494_SNP [dm3] 3L_5377394_SNP [dm6]	C	A	4.133e^-5	0.96	UPSTREAM CR45743 INTERGENIC
3L	12729425	3L_12729425_SNP [dm3] 3L_12736325_SNP [dm6]	C	G	4.188e^-5	0.96	NON_SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA
2R	15824651	2R_15824651_SNP [dm3] 2R_19937146_SNP [dm6]	G	A	4.268e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9885770	X_9885770_SNP [dm3] X_9991737_SNP [dm6]	T	C	4.367e^-5	0.96	INTRON CG32694
X	9885778	X_9885778_INS [dm3] X_9991745_INS [dm6]	T	TTAT	4.367e^-5	0.96	INTRON CG32694
3R	18834669	3R_18834669_DEL [dm3] 3R_23008947_DEL [dm6]	TGT	T	4.373e^-5	0.96	INTRON CG34375
3L	3896832	3L_3896832_SNP [dm3] 3L_3896832_SNP [dm6]	A	G	4.401e^-5	0.96	UPSTREAM CG14977 & 1 other DOWNSTREAM Ccz1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13846536	2R_13846536_SNP [dm3] 2R_17959031_SNP [dm6]	T	A	4.484e^-5	0.967	INTERGENIC
3L	9278867	3L_9278867_SNP [dm3] 3L_9285767_SNP [dm6]	G	T	4.594e^-5	0.979	UTR_3_PRIME GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7149429	2R_7149429_SNP [dm3] 2R_11261924_SNP [dm6]	T	G	4.814e^-5	0.987	UPSTREAM Cpr47Ed INTERGENIC
2L	8369680	2L_8369680_SNP [dm3] 2L_8369680_SNP [dm6]	C	T	4.919e^-5	0.987	UPSTREAM CG17292 DOWNSTREAM CR45341 INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
3L	9542079	3L_9542079_SNP [dm3] 3L_9548979_SNP [dm6]	C	T	4.980e^-5	0.987	INTRON CG42673
3L	10626751	3L_10626751_SNP [dm3] 3L_10633651_SNP [dm6]	C	G	5.065e^-5	0.987	SYNONYMOUS_CODING hay DOWNSTREAM E_z_ INTRON CG34001
2R	10699166	2R_10699166_SNP [dm3] 2R_14811661_SNP [dm6]	G	A	5.241e^-5	0.987	INTERGENIC
X	8444605	X_8444605_DEL [dm3] X_8550572_DEL [dm6]	AA	A	5.310e^-5	0.987	UTR_3_PRIME Nrg DOWNSTREAM Nrg INTRON Nrg	TF binding site BDTNP1_TFBS_dl
2R	10999371	2R_10999371_SNP [dm3] 2R_15111866_SNP [dm6]	A	G	5.417e^-5	0.987	INTERGENIC
2R	13846545	2R_13846545_SNP [dm3] 2R_17959040_SNP [dm6]	T	G	5.455e^-5	0.987	INTERGENIC
3R	25429738	3R_25429738_SNP [dm3] 3R_29604016_SNP [dm6]	G	A	5.496e^-5	0.987	INTRON alph
X	4341826	X_4341826_SNP [dm3] X_4447793_SNP [dm6]	C	A	5.557e^-5	0.987	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7726312	2L_7726312_SNP [dm3] 2L_7726312_SNP [dm6]	G	A	5.842e^-5	0.987	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
2R	10556681	2R_10556681_INS [dm3] 2R_14669176_INS [dm6]	G	GG	6.065e^-5	0.987	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
3R	9791754	3R_9791754_SNP [dm3] 3R_13966032_SNP [dm6]	C	T	6.177e^-5	0.987	SYNONYMOUS_CODING Orc2	TF binding site mE1_TFBS_sens
2R	15822434	2R_15822434_SNP [dm3] 2R_19934929_SNP [dm6]	G	T	6.199e^-5	0.987	EXON CR44627
2L	3154985	2L_3154985_SNP [dm3] 2L_3154985_SNP [dm6]	T	A	6.261e^-5	0.987	INTRON Mad
3R	18834830	3R_18834830_SNP [dm3] 3R_23009108_SNP [dm6]	G	A	6.309e^-5	0.987	INTRON CG34375
2R	10713064	2R_10713064_SNP [dm3] 2R_14825559_SNP [dm6]	T	C	6.333e^-5	0.987	INTERGENIC
2R	3074235	2R_3074235_SNP [dm3] 2R_7186730_SNP [dm6]	C	A	6.494e^-5	0.987	UPSTREAM pk INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk mE1_TFBS_zfh1
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	6.522e^-5	0.987	UPSTREAM Cyp316a1 INTERGENIC
2L	16494529	2L_16494529_SNP [dm3] 2L_16494529_SNP [dm6]	A	T	6.596e^-5	0.987	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15824720	2R_15824720_SNP [dm3] 2R_19937215_SNP [dm6]	G	T	6.600e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5422635	3R_5422635_SNP [dm3] 3R_9596913_SNP [dm6]	A	T	6.607e^-5	0.987	INTRON CG8312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13980955	2R_13980955_SNP [dm3] 2R_18093450_SNP [dm6]	A	G	6.629e^-5	0.987	NON_SYNONYMOUS_CODING CG34386 DOWNSTREAM CG5757	TF binding site BDTNP1_TFBS_bcd
3L	7532463	3L_7532463_SNP [dm3] 3L_7539363_SNP [dm6]	A	G	6.660e^-5	0.987	SYNONYMOUS_CODING CG16998 UTR_3_PRIME lqf DOWNSTREAM CG32374
2R	10707750	2R_10707750_SNP [dm3] 2R_14820245_SNP [dm6]	C	T	6.730e^-5	0.987	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
X	21325838	X_21325838_SNP [dm3] X_21454811_SNP [dm6]	G	T	6.738e^-5	0.987	INTRON CG42343
2R	18393112	2R_18393112_SNP [dm3] 2R_22505607_SNP [dm6]	A	C	6.746e^-5	0.987	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8387713	X_8387713_SNP [dm3] X_8493680_SNP [dm6]	G	A	6.749e^-5	0.987	INTRON CG33181
2R	10020846	2R_10020846_SNP [dm3] 2R_14133341_SNP [dm6]	T	A	6.828e^-5	0.987	INTRON Prosap
3L	10167520	3L_10167520_SNP [dm3] 3L_10174420_SNP [dm6]	A	C	6.897e^-5	0.987	INTRON dpr10
3L	3103597	3L_3103597_DEL [dm3] 3L_3103597_DEL [dm6]	TATTATTG	A	6.907e^-5	0.987	INTRON Cht7
2L	16494527	2L_16494527_SNP [dm3] 2L_16494527_SNP [dm6]	G	T	6.926e^-5	0.987	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	5921994	X_5921994_SNP [dm3] X_6027961_SNP [dm6]	A	C	6.945e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13000191	3R_13000191_SNP [dm3] 3R_17174469_SNP [dm6]	A	G	6.963e^-5	0.987	INTRON Mur89F
3R	8529572	3R_8529572_SNP [dm3] 3R_12703850_SNP [dm6]	A	C	6.965e^-5	0.987	INTRON Past1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11733552	2R_11733552_SNP [dm3] 2R_15846047_SNP [dm6]	G	A	6.973e^-5	0.987	NON_SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15379266	3R_15379266_SNP [dm3] 3R_19553544_SNP [dm6]	A	C	6.986e^-5	0.987	INTRON Dys
2L	9854276	2L_9854276_SNP [dm3] 2L_9854276_SNP [dm6]	T	A	6.997e^-5	0.987	INTRON nAChRalpha6
3R	9912618	3R_9912618_SNP [dm3] 3R_14086896_SNP [dm6]	A	C	7.002e^-5	0.987	INTRON foxo
2R	7032495	2R_7032495_SNP [dm3] 2R_11144990_SNP [dm6]	A	G	7.035e^-5	0.987	INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16514284	2R_16514284_SNP [dm3] 2R_20626779_SNP [dm6]	C	T	7.059e^-5	0.987	SYNONYMOUS_CODING CG16742
3L	2747100	3L_2747100_SNP [dm3] 3L_2747100_SNP [dm6]	G	T	7.117e^-5	0.987	INTRON Mrtf
2R	10707700	2R_10707700_SNP [dm3] 2R_14820195_SNP [dm6]	G	A	7.248e^-5	0.987	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	11407099	2R_11407099_SNP [dm3] 2R_15519594_SNP [dm6]	A	G	7.340e^-5	0.987	NON_SYNONYMOUS_CODING Khc-73
2R	11407244	2R_11407244_SNP [dm3] 2R_15519739_SNP [dm6]	A	G	7.340e^-5	0.987	SYNONYMOUS_CODING Khc-73
2L	8636541	2L_8636541_SNP [dm3] 2L_8636541_SNP [dm6]	A	G	7.347e^-5	0.987	INTRON Sema-1a
2L	9224913	2L_9224913_SNP [dm3] 2L_9224913_SNP [dm6]	A	G	7.362e^-5	0.987	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	15043152	X_15043152_SNP [dm3] X_15149119_SNP [dm6]	T	C	7.377e^-5	0.987	INTRON CG9095
X	15042551	X_15042551_SNP [dm3] X_15148518_SNP [dm6]	A	G	7.580e^-5	0.987	INTRON CG9095
2R	18509107	2R_18509107_SNP [dm3] 2R_22621602_SNP [dm6]	A	T	7.611e^-5	0.987	INTRON CG33143	TF binding site mE1_TFBS_inv
2L	4358120	2L_4358120_SNP [dm3] 2L_4358120_SNP [dm6]	C	A	7.734e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cnc mE1_TFBS_HSA
3R	15359020	3R_15359020_DEL [dm3] 3R_19533298_DEL [dm6]	CGAATGACTACA...	C	7.779e^-5	0.987	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2678144	3L_2678144_SNP [dm3] 3L_2678144_SNP [dm6]	G	A	7.807e^-5	0.987	INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	11734755	2R_11734755_SNP [dm3] 2R_15847250_SNP [dm6]	A	G	7.959e^-5	0.987	UTR_5_PRIME CG8249 INTRON tun	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7362861	2L_7362861_SNP [dm3] 2L_7362861_SNP [dm6]	A	G	8.004e^-5	0.987	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1745486	3L_1745486_SNP [dm3] 3L_1745486_SNP [dm6]	A	G	8.051e^-5	0.987	DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
2R	18481975	2R_18481975_SNP [dm3] 2R_22594470_SNP [dm6]	G	T	8.074e^-5	0.987	UPSTREAM CG3927 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10698680	2R_10698680_SNP [dm3] 2R_14811175_SNP [dm6]	A	G	8.094e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7234481	2L_7234481_SNP [dm3] 2L_7234481_SNP [dm6]	G	A	8.133e^-5	0.987	INTRON Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13246530	3R_13246530_SNP [dm3] 3R_17420808_SNP [dm6]	G	T	8.146e^-5	0.987	SYNONYMOUS_CODING CG42835 DOWNSTREAM CG14332
3R	15359019	3R_15359019_SNP [dm3] 3R_19533297_SNP [dm6]	T	G	8.153e^-5	0.987	INTRON Dys	TF binding site mE1_TFBS_inv
2L	8369612	2L_8369612_SNP [dm3] 2L_8369612_SNP [dm6]	T	A	8.203e^-5	0.987	UPSTREAM CG17292 DOWNSTREAM CR45341 INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2R	18393111	2R_18393111_SNP [dm3] 2R_22505606_SNP [dm6]	T	A	8.204e^-5	0.987	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10707908	2R_10707908_SNP [dm3] 2R_14820403_SNP [dm6]	C	T	8.332e^-5	0.987	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	10706453	2R_10706453_SNP [dm3] 2R_14818948_SNP [dm6]	C	T	8.419e^-5	0.987	INTRON CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16919790	2R_16919790_SNP [dm3] 2R_21032285_SNP [dm6]	G	C	8.570e^-5	0.987	INTERGENIC
2R	18975781	2R_18975781_SNP [dm3] 2R_23088258_SNP [dm6]	C	T	8.604e^-5	0.987	DOWNSTREAM CG13538 INTERGENIC
2R	4011286	2R_4011286_SNP [dm3] 2R_8123781_SNP [dm6]	T	C	8.611e^-5	0.987	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	4286909	3L_4286909_INS [dm3] 3L_4286909_INS [dm6]	T	TTGGG	8.619e^-5	0.987	UPSTREAM TfIIEbeta DOWNSTREAM CG1316 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	10707559	2R_10707559_SNP [dm3] 2R_14820054_SNP [dm6]	G	A	8.630e^-5	0.987	UPSTREAM CG10202 INTERGENIC
X	10079751	X_10079751_INS [dm3] X_10185718_INS [dm6]	G	GTTAACTTAACTTAG...	8.646e^-5	0.987	INTRON CG43902 & 1 other
3L	7279316	3L_7279316_SNP [dm3] 3L_7286216_SNP [dm6]	G	A	8.649e^-5	0.987	INTRON unc-13-4A
3L	14540902	3L_14540902_SNP [dm3] 3L_14547802_SNP [dm6]	T	C	8.677e^-5	0.987	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20941276	X_20941276_SNP [dm3] X_21070249_SNP [dm6]	C	A	8.688e^-5	0.987	INTRON bves	TF binding site BDTNP1_TFBS_twi
3R	20165914	3R_20165914_SNP [dm3] 3R_24340192_SNP [dm6]	G	A	8.728e^-5	0.987	UTR_3_PRIME CG6432 DOWNSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5580317	X_5580317_SNP [dm3] X_5686284_SNP [dm6]	G	A	8.783e^-5	0.987	INTRON CG3160
2R	9100697	2R_9100697_SNP [dm3] 2R_13213192_SNP [dm6]	T	C	8.789e^-5	0.987	SYNONYMOUS_CODING AQP UPSTREAM CG30058 & 2 others
3R	10318540	3R_10318540_SNP [dm3] 3R_14492818_SNP [dm6]	A	C	8.814e^-5	0.987	INTERGENIC
2L	5454158	2L_5454158_SNP [dm3] 2L_5454158_SNP [dm6]	C	T	8.869e^-5	0.987	INTERGENIC
X	21176301	X_21176301_DEL [dm3] X_21305274_DEL [dm6]	AAGGA	T	8.927e^-5	0.987	UPSTREAM tRNA:CR32520 DOWNSTREAM tRNA:CR32525 INTRON CG1718
2R	15824879	2R_15824879_SNP [dm3] 2R_19937374_SNP [dm6]	G	T	8.971e^-5	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6559717	2R_6559717_SNP [dm3] 2R_10672212_SNP [dm6]	C	A	9.077e^-5	0.987	INTERGENIC	TF binding site mE1_TFBS_sens
3L	4286911	3L_4286911_DEL [dm3] 3L_4286911_DEL [dm6]	ATTCTCGCTAT...	A	9.093e^-5	0.987	UPSTREAM TfIIEbeta DOWNSTREAM CG1316 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	1801029	3L_1801029_SNP [dm3] 3L_1801029_SNP [dm6]	C	T	9.111e^-5	0.987	SYNONYMOUS_CODING Patj DOWNSTREAM JTBR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14712281	3L_14712281_SNP [dm3] 3L_14719181_SNP [dm6]	A	G	9.127e^-5	0.987	INTRON ome
2L	9532265	2L_9532265_SNP [dm3] 2L_9532265_SNP [dm6]	C	T	9.172e^-5	0.987	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3758906	3L_3758906_INS [dm3] 3L_3758906_INS [dm6]	A	ATA	9.300e^-5	0.987	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
X	19298645	X_19298645_SNP [dm3] X_19404612_SNP [dm6]	G	T	9.303e^-5	0.987	INTRON kek5
2L	5913517	2L_5913517_SNP [dm3] 2L_5913517_SNP [dm6]	A	G	9.384e^-5	0.987	INTRON bchs	TF binding site mE1_TFBS_cad
2R	10699035	2R_10699035_SNP [dm3] 2R_14811530_SNP [dm6]	T	A	9.387e^-5	0.987	INTERGENIC
2R	18975687	2R_18975687_SNP [dm3] 2R_23088164_SNP [dm6]	C	T	9.514e^-5	0.987	UTR_3_PRIME CG13538
2R	18975963	2R_18975963_SNP [dm3] 2R_23088440_SNP [dm6]	G	C	9.514e^-5	0.987	DOWNSTREAM CG13538 INTERGENIC
2L	16482191	2L_16482191_SNP [dm3] 2L_16482191_SNP [dm6]	C	G	9.575e^-5	0.987	INTRON dac	regulatory region REDfly_CRMs
3L	1473272	3L_1473272_SNP [dm3] 3L_1473272_SNP [dm6]	C	G	9.690e^-5	0.987	UTR_5_PRIME Ptp61F
2L	16494272	2L_16494272_SNP [dm3] 2L_16494272_SNP [dm6]	A	T	9.769e^-5	0.987	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7713079	3R_7713079_SNP [dm3] 3R_11887357_SNP [dm6]	C	T	9.903e^-5	0.987	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	8483943	3R_8483943_SNP [dm3] 3R_12658221_SNP [dm6]	C	G	9.962e^-5	0.987	INTRON CG6225	TF binding site mE1_TFBS_cad
X	8387740	X_8387740_SNP [dm3] X_8493707_SNP [dm6]	A	G	1.006e^-4	0.987	INTRON CG33181
2L	1244575	2L_1244575_INS [dm3] 2L_1244575_INS [dm6]	A	ATA	1.021e^-4	0.987	INTERGENIC
2L	7753747	2L_7753747_SNP [dm3] 2L_7753747_SNP [dm6]	T	C	1.026e^-4	0.987	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	16623843	2L_16623843_INS [dm3] 2L_16623843_INS [dm6]	T	TAGCTCTT	1.034e^-4	0.987	INTRON CG42389
3R	7711857	3R_7711857_SNP [dm3] 3R_11886135_SNP [dm6]	C	T	1.036e^-4	0.987	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	5583484	X_5583484_SNP [dm3] X_5689451_SNP [dm6]	C	T	1.049e^-4	0.987	UTR_5_PRIME CG3160 UPSTREAM cv DOWNSTREAM CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5921365	X_5921365_INS [dm3] X_6027332_INS [dm6]	A	AA	1.060e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16104210	2L_16104210_SNP [dm3] 2L_16104210_SNP [dm6]	G	A	1.067e^-4	0.987	INTERGENIC
X	21175418	X_21175418_SNP [dm3] X_21304391_SNP [dm6]	C	G	1.073e^-4	0.987	UPSTREAM tRNA:CR32525 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2L	8590956	2L_8590956_SNP [dm3] 2L_8590956_SNP [dm6]	A	T	1.078e^-4	0.987	UPSTREAM CR43855 INTRON Sema-1a & 1 other
X	20423931	X_20423931_SNP [dm3] X_20552904_SNP [dm6]	T	C	1.081e^-4	0.987	INTRON RunxB
2R	4461002	2R_4461002_SNP [dm3] 2R_8573497_SNP [dm6]	T	C	1.099e^-4	0.987	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
3L	12770049	3L_12770049_SNP [dm3] 3L_12776949_SNP [dm6]	A	T	1.104e^-4	0.987	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3R	21296405	3R_21296405_SNP [dm3] 3R_25470683_SNP [dm6]	C	T	1.121e^-4	0.987	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
X	19991269	X_19991269_SNP [dm3] X_20097236_SNP [dm6]	T	A	1.124e^-4	0.987	UPSTREAM CG42581 INTERGENIC
2R	12391413	2R_12391413_SNP [dm3] 2R_16503908_SNP [dm6]	T	A	1.127e^-4	0.987	INTRON Sema-2a
3L	2868241	3L_2868241_SNP [dm3] 3L_2868241_SNP [dm6]	T	C	1.136e^-4	0.987	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	10706424	2R_10706424_SNP [dm3] 2R_14818919_SNP [dm6]	A	G	1.152e^-4	0.987	INTRON CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15822684	2R_15822684_SNP [dm3] 2R_19935179_SNP [dm6]	A	G	1.168e^-4	0.987	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6526876	3L_6526876_SNP [dm3] 3L_6533776_SNP [dm6]	A	T	1.168e^-4	0.987	INTRON sfl
2R	14947462	2R_14947462_SNP [dm3] 2R_19059957_SNP [dm6]	T	C	1.175e^-4	0.987	NON_SYNONYMOUS_CODING CG15109
2R	10706408	2R_10706408_SNP [dm3] 2R_14818903_SNP [dm6]	G	A	1.187e^-4	0.987	NON_SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19560710	3R_19560710_SNP [dm3] 3R_23734988_SNP [dm6]	A	G	1.189e^-4	0.987	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15121995	3L_15121995_SNP [dm3] 3L_15128895_SNP [dm6]	T	C	1.212e^-4	0.987	NON_SYNONYMOUS_CODING CG13457 DOWNSTREAM Cep135
2R	12809632	2R_12809632_SNP [dm3] 2R_16922127_SNP [dm6]	T	A	1.217e^-4	0.987	INTERGENIC
3R	8542762	3R_8542762_SNP [dm3] 3R_12717040_SNP [dm6]	A	T	1.225e^-4	0.987	INTRON Men
3L	10092682	3L_10092682_SNP [dm3] 3L_10099582_SNP [dm6]	C	T	1.234e^-4	0.987	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
3L	9537715	3L_9537715_DEL [dm3] 3L_9544615_DEL [dm6]	CA	C	1.236e^-4	0.987	UPSTREAM Ir67a INTERGENIC
3L	9522849	3L_9522849_SNP [dm3] 3L_9529749_SNP [dm6]	A	T	1.237e^-4	0.987	INTRON Or67a
2R	9693549	2R_9693549_SNP [dm3] 2R_13806044_SNP [dm6]	A	C	1.249e^-4	0.987	UTR_5_PRIME stj UPSTREAM stj DOWNSTREAM Cpr50Cb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10664784	2L_10664784_SNP [dm3] 2L_10664784_SNP [dm6]	C	A	1.258e^-4	0.987	INTRON CG31871
3R	13117676	3R_13117676_SNP [dm3] 3R_17291954_SNP [dm6]	C	T	1.260e^-4	0.987	INTERGENIC
2L	16494433	2L_16494433_SNP [dm3] 2L_16494433_SNP [dm6]	C	T	1.269e^-4	0.987	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9791758	3R_9791758_SNP [dm3] 3R_13966036_SNP [dm6]	A	C	1.273e^-4	0.987	NON_SYNONYMOUS_CODING Orc2	TF binding site mE1_TFBS_sens
3R	14348680	3R_14348680_SNP [dm3] 3R_18522958_SNP [dm6]	A	G	1.274e^-4	0.987	INTRON fru
3R	7492782	3R_7492782_DEL [dm3] 3R_11667060_DEL [dm6]	TATGTTTTGAGTACTA...	T	1.277e^-4	0.987	INTRON CG42327
X	10277714	X_10277714_SNP [dm3] X_10383681_SNP [dm6]	T	A	1.280e^-4	0.987	UTR_3_PRIME Psf3 DOWNSTREAM Psf3 & 1 other
3L	8032559	3L_8032559_INS [dm3] 3L_8039459_INS [dm6]	C	CC	1.281e^-4	0.987	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6562564	3L_6562564_SNP [dm3] 3L_6569464_SNP [dm6]	A	G	1.285e^-4	0.987	INTRON CG18769 & 1 other
3L	9521285	3L_9521285_SNP [dm3] 3L_9528185_SNP [dm6]	T	A	1.288e^-4	0.987	UPSTREAM Or67a INTERGENIC
2R	10705338	2R_10705338_SNP [dm3] 2R_14817833_SNP [dm6]	G	T	1.294e^-4	0.987	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7532422	3L_7532422_SNP [dm3] 3L_7539322_SNP [dm6]	A	C	1.295e^-4	0.987	NON_SYNONYMOUS_CODING CG16998 UTR_3_PRIME lqf DOWNSTREAM CG32374
3R	26113536	3R_26113536_DEL [dm3] 3R_30287814_DEL [dm6]	TGG	T	1.308e^-4	0.987	INTRON hdc
2R	18976238	2R_18976238_SNP [dm3] 2R_23088715_SNP [dm6]	C	T	1.309e^-4	0.987	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11406986	2R_11406986_SNP [dm3] 2R_15519481_SNP [dm6]	G	A	1.311e^-4	0.987	SYNONYMOUS_CODING Khc-73
3R	6401662	3R_6401662_DEL [dm3] 3R_10575940_DEL [dm6]	TTAAAATGA	T	1.327e^-4	0.987	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7713209	3R_7713209_SNP [dm3] 3R_11887487_SNP [dm6]	T	G	1.336e^-4	0.987	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	2475549	3L_2475549_SNP [dm3] 3L_2475549_SNP [dm6]	T	C	1.344e^-4	0.987	NON_SYNONYMOUS_CODING CG16762 DOWNSTREAM Cyp4d20 INTRON CG45186
X	11100487	X_11100487_SNP [dm3] X_11206454_SNP [dm6]	A	T	1.350e^-4	0.987	INTERGENIC
2L	8369583	2L_8369583_SNP [dm3] 2L_8369583_SNP [dm6]	A	T	1.360e^-4	0.987	UPSTREAM CG17292 DOWNSTREAM CR45341 INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
3R	15104319	3R_15104319_SNP [dm3] 3R_19278597_SNP [dm6]	T	G	1.367e^-4	0.987	DOWNSTREAM CR44173 INTERGENIC
2R	13419350	2R_13419350_SNP [dm3] 2R_17531845_SNP [dm6]	A	T	1.386e^-4	0.987	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7130084	2R_7130084_SNP [dm3] 2R_11242579_SNP [dm6]	G	T	1.392e^-4	0.987	UPSTREAM Listericin INTERGENIC
2L	10011609	2L_10011609_SNP [dm3] 2L_10011609_SNP [dm6]	C	T	1.404e^-4	0.987	SPLICE_SITE_REGION Trp1 SYNONYMOUS_CODING Trp1
3L	7532441	3L_7532441_SNP [dm3] 3L_7539341_SNP [dm6]	T	C	1.404e^-4	0.987	NON_SYNONYMOUS_CODING CG16998 UTR_3_PRIME lqf DOWNSTREAM CG32374
X	11100516	X_11100516_SNP [dm3] X_11206483_SNP [dm6]	T	A	1.408e^-4	0.987	INTERGENIC
3R	20132451	3R_20132451_SNP [dm3] 3R_24306729_SNP [dm6]	T	C	1.412e^-4	0.987	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15825619	2R_15825619_SNP [dm3] 2R_19938114_SNP [dm6]	T	A	1.412e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18503585	3R_18503585_SNP [dm3] 3R_22677863_SNP [dm6]	C	T	1.414e^-4	0.987	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11100497	X_11100497_SNP [dm3] X_11206464_SNP [dm6]	C	T	1.429e^-4	0.987	INTERGENIC
X	18889079	X_18889079_SNP [dm3] X_18995046_SNP [dm6]	A	C	1.432e^-4	0.987	INTRON CG43759
3R	7965368	3R_7965368_SNP [dm3] 3R_12139646_SNP [dm6]	C	T	1.447e^-4	0.987	UTR_3_PRIME dpr15
2L	16104205	2L_16104205_SNP [dm3] 2L_16104205_SNP [dm6]	T	A	1.465e^-4	0.987	INTERGENIC
3L	16297093	3L_16297093_SNP [dm3] 3L_16303993_SNP [dm6]	G	T	1.471e^-4	0.987	UPSTREAM CG13044 & 1 other INTERGENIC
3L	1469048	3L_1469048_SNP [dm3] 3L_1469048_SNP [dm6]	G	C	1.472e^-4	0.987	DOWNSTREAM rho INTRON Ptp61F
2L	8640893	2L_8640893_SNP [dm3] 2L_8640893_SNP [dm6]	C	T	1.480e^-4	0.987	INTRON Sema-1a
2L	8640900	2L_8640900_SNP [dm3] 2L_8640900_SNP [dm6]	T	C	1.480e^-4	0.987	INTRON Sema-1a
3R	11898700	3R_11898700_SNP [dm3] 3R_16072978_SNP [dm6]	G	C	1.508e^-4	0.987	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8639103	X_8639103_SNP [dm3] X_8745070_SNP [dm6]	A	G	1.512e^-4	0.987	INTERGENIC
2L	4358101	2L_4358101_DEL [dm3] 2L_4358101_DEL [dm6]	TG	T	1.512e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cnc mE1_TFBS_HSA
3R	3457239	3R_3457239_SNP [dm3] 3R_7631517_SNP [dm6]	G	C	1.516e^-4	0.987	INTRON CG34127
3L	10640617	3L_10640617_SNP [dm3] 3L_10647517_SNP [dm6]	C	A	1.522e^-4	0.987	INTRON CG32066
2L	3970065	2L_3970065_SNP [dm3] 2L_3970065_SNP [dm6]	A	G	1.527e^-4	0.987	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	4006059	3R_4006059_SNP [dm3] 3R_8180337_SNP [dm6]	T	C	1.532e^-4	0.987	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2R	7846021	2R_7846021_SNP [dm3] 2R_11958516_SNP [dm6]	C	G	1.533e^-4	0.987	INTRON CG13188
X	8387745	X_8387745_SNP [dm3] X_8493712_SNP [dm6]	T	G	1.540e^-4	0.987	INTRON CG33181
3R	18758942	3R_18758942_SNP [dm3] 3R_22933220_SNP [dm6]	T	A	1.540e^-4	0.987	INTRON klg
3L	20943933	3L_20943933_SNP [dm3] 3L_20950833_SNP [dm6]	A	C	1.544e^-4	0.987	UPSTREAM CR45243 INTERGENIC
2L	7234493	2L_7234493_SNP [dm3] 2L_7234493_SNP [dm6]	G	T	1.550e^-4	0.987	INTRON Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7946480	2L_7946480_SNP [dm3] 2L_7946480_SNP [dm6]	G	A	1.558e^-4	0.987	INTRON Snoo
2L	9884653	2L_9884653_SNP [dm3] 2L_9884653_SNP [dm6]	C	T	1.570e^-4	0.987	INTRON nAChRalpha6
3R	5102432	3R_5102432_DEL [dm3] 3R_9276710_DEL [dm6]	GTG	G	1.579e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21047518	X_21047518_SNP [dm3] X_21176491_SNP [dm6]	T	A	1.580e^-4	0.987	INTERGENIC
X	6136787	X_6136787_SNP [dm3] X_6242754_SNP [dm6]	A	G	1.582e^-4	0.987	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12540062	X_12540062_DEL [dm3] X_12646029_DEL [dm6]	AA	A	1.588e^-4	0.987	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14544138	3L_14544138_INS [dm3] 3L_14551038_INS [dm6]	A	AGA	1.590e^-4	0.987	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	11289169	3L_11289169_SNP [dm3] 3L_11296069_SNP [dm6]	T	C	1.592e^-4	0.987	UPSTREAM CG6175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12829868	2R_12829868_SNP [dm3] 2R_16942363_SNP [dm6]	G	A	1.593e^-4	0.987	SYNONYMOUS_CODING Pkc53E
3L	12307957	3L_12307957_SNP [dm3] 3L_12314857_SNP [dm6]	C	T	1.598e^-4	0.987	INTERGENIC	regulatory region REDfly_CRMs
X	12910072	X_12910072_INS [dm3] X_13016039_INS [dm6]	A	AA	1.600e^-4	0.987	INTRON rad
3L	10070939	3L_10070939_SNP [dm3] 3L_10077839_SNP [dm6]	C	T	1.602e^-4	0.987	INTRON dpr6
3L	8032870	3L_8032870_DEL [dm3] 3L_8039770_DEL [dm6]	AA	A	1.622e^-4	0.987	INTRON nmo
3R	19072313	3R_19072313_SNP [dm3] 3R_23246591_SNP [dm6]	A	T	1.625e^-4	0.987	INTRON CG4467
2R	15863744	2R_15863744_SNP [dm3] 2R_19976239_SNP [dm6]	A	T	1.626e^-4	0.987	INTERGENIC
3L	13911530	3L_13911530_SNP [dm3] 3L_13918430_SNP [dm6]	C	T	1.628e^-4	0.987	INTRON Rgl
X	15050358	X_15050358_SNP [dm3] X_15156325_SNP [dm6]	A	G	1.633e^-4	0.987	INTRON CG9095	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1746069	3L_1746069_DEL [dm3] 3L_1746069_DEL [dm6]	GTG	G	1.648e^-4	0.987	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	13178070	3R_13178070_SNP [dm3] 3R_17352348_SNP [dm6]	C	A	1.649e^-4	0.987	INTRON beat-IIa
3L	1469050	3L_1469050_SNP [dm3] 3L_1469050_SNP [dm6]	A	T	1.654e^-4	0.987	DOWNSTREAM rho INTRON Ptp61F
X	10911905	X_10911905_DEL [dm3] X_11017872_DEL [dm6]	TATGT	T	1.657e^-4	0.987	INTRON CG42339	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5913525	2L_5913525_SNP [dm3] 2L_5913525_SNP [dm6]	A	T	1.663e^-4	0.987	INTRON bchs	TF binding site mE1_TFBS_cad
3L	13978462	3L_13978462_SNP [dm3] 3L_13985362_SNP [dm6]	G	T	1.664e^-4	0.987	SYNONYMOUS_CODING CG17364	TF binding site mE1_TFBS_cad
3R	25429747	3R_25429747_SNP [dm3] 3R_29604025_SNP [dm6]	G	T	1.666e^-4	0.987	INTRON alph
3R	15104399	3R_15104399_SNP [dm3] 3R_19278677_SNP [dm6]	C	T	1.688e^-4	0.987	DOWNSTREAM CR44173 INTERGENIC
3R	21464816	3R_21464816_SNP [dm3] 3R_25639094_SNP [dm6]	T	A	1.690e^-4	0.987	UPSTREAM jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	13978679	2R_13978679_SNP [dm3] 2R_18091174_SNP [dm6]	T	C	1.690e^-4	0.987	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	17309222	3L_17309222_SNP [dm3] 3L_17316122_SNP [dm6]	G	C	1.691e^-4	0.987	INTERGENIC
3L	15211042	3L_15211042_SNP [dm3] 3L_15217942_SNP [dm6]	A	T	1.699e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21383724	3R_21383724_SNP [dm3] 3R_25558002_SNP [dm6]	A	G	1.705e^-4	0.987	INTRON msi
3L	4076746	3L_4076746_SNP [dm3] 3L_4076746_SNP [dm6]	A	T	1.708e^-4	0.987	INTRON Gad1
3L	7468447	3L_7468447_SNP [dm3] 3L_7475347_SNP [dm6]	C	G	1.713e^-4	0.987	UPSTREAM CG43292 INTERGENIC
2R	18392720	2R_18392720_SNP [dm3] 2R_22505215_SNP [dm6]	C	G	1.715e^-4	0.987	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10299286	3R_10299286_SNP [dm3] 3R_14473564_SNP [dm6]	A	G	1.715e^-4	0.987	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5189648	X_5189648_SNP [dm3] X_5295615_SNP [dm6]	C	G	1.720e^-4	0.987	UPSTREAM CG42749 INTERGENIC
2L	16104207	2L_16104207_INS [dm3] 2L_16104207_INS [dm6]	T	TGTTTTAATCA...	1.720e^-4	0.987	INTERGENIC
2R	12807241	2R_12807241_SNP [dm3] 2R_16919736_SNP [dm6]	A	T	1.725e^-4	0.987	INTERGENIC
X	21212499	X_21212499_SNP [dm3] X_21341472_SNP [dm6]	G	A	1.728e^-4	0.987	SYNONYMOUS_CODING fliI	TF binding site mE1_TFBS_chinmo
3R	26375167	3R_26375167_SNP [dm3] 3R_30549445_SNP [dm6]	C	G	1.730e^-4	0.987	INTRON tmod
3R	11898705	3R_11898705_SNP [dm3] 3R_16072983_SNP [dm6]	G	C	1.735e^-4	0.987	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12807671	2R_12807671_SNP [dm3] 2R_16920166_SNP [dm6]	C	T	1.739e^-4	0.987	INTERGENIC
3R	7711956	3R_7711956_SNP [dm3] 3R_11886234_SNP [dm6]	A	G	1.778e^-4	0.987	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	7481264	3L_7481264_SNP [dm3] 3L_7488164_SNP [dm6]	A	G	1.785e^-4	0.987	DOWNSTREAM mthl6 INTERGENIC
3L	9242569	3L_9242569_SNP [dm3] 3L_9249469_SNP [dm6]	G	A	1.791e^-4	0.987	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12807297	2R_12807297_SNP [dm3] 2R_16919792_SNP [dm6]	A	G	1.801e^-4	0.987	INTERGENIC
X	12972493	X_12972493_SNP [dm3] X_13078460_SNP [dm6]	C	T	1.803e^-4	0.987	UTR_3_PRIME rad DOWNSTREAM hep
3L	19128673	3L_19128673_SNP [dm3] 3L_19135573_SNP [dm6]	C	A	1.807e^-4	0.987	INTRON CG14082
2L	7753896	2L_7753896_SNP [dm3] 2L_7753896_SNP [dm6]	A	G	1.808e^-4	0.987	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2R	3089684	2R_3089684_SNP [dm3] 2R_7202179_SNP [dm6]	T	C	1.811e^-4	0.987	INTRON pk
2R	12807499	2R_12807499_SNP [dm3] 2R_16919994_SNP [dm6]	G	A	1.815e^-4	0.987	INTERGENIC
2R	12801865	2R_12801865_SNP [dm3] 2R_16914360_SNP [dm6]	G	A	1.816e^-4	0.987	INTERGENIC
2R	6238612	2R_6238612_SNP [dm3] 2R_10351107_SNP [dm6]	G	A	1.817e^-4	0.987	DOWNSTREAM CG43172 & 1 other INTRON CG42732
3R	7927428	3R_7927428_SNP [dm3] 3R_12101706_SNP [dm6]	T	C	1.834e^-4	0.987	INTRON dpr17
2L	9705934	2L_9705934_SNP [dm3] 2L_9705934_SNP [dm6]	C	T	1.839e^-4	0.987	UTR_5_PRIME CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	8240364	X_8240364_SNP [dm3] X_8346331_SNP [dm6]	T	A	1.840e^-4	0.987	INTRON nAChRalpha3
3R	18834446	3R_18834446_SNP [dm3] 3R_23008724_SNP [dm6]	A	T	1.841e^-4	0.987	INTRON CG34375
2R	9536106	2R_9536106_SNP [dm3] 2R_13648601_SNP [dm6]	A	G	1.842e^-4	0.987	INTRON fas
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	1.843e^-4	0.987	INTRON rgn
2R	12604635	2R_12604635_SNP [dm3] 2R_16717130_SNP [dm6]	A	T	1.851e^-4	0.987	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12806175	2R_12806175_SNP [dm3] 2R_16918670_SNP [dm6]	C	A	1.861e^-4	0.987	INTERGENIC
3R	19544875	3R_19544875_SNP [dm3] 3R_23719153_SNP [dm6]	A	G	1.863e^-4	0.987	UPSTREAM nau DOWNSTREAM CG10232 INTERGENIC
3R	26102144	3R_26102144_SNP [dm3] 3R_30276422_SNP [dm6]	T	G	1.866e^-4	0.987	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	17949106	2R_17949106_SNP [dm3] 2R_22061601_SNP [dm6]	T	C	1.873e^-4	0.987	UPSTREAM CG13501 INTRON Snp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20471793	3R_20471793_SNP [dm3] 3R_24646071_SNP [dm6]	A	C	1.876e^-4	0.987	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10707907	2R_10707907_SNP [dm3] 2R_14820402_SNP [dm6]	T	G	1.881e^-4	0.987	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	3111872	3L_3111872_SNP [dm3] 3L_3111872_SNP [dm6]	A	G	1.885e^-4	0.987	SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
3R	7712224	3R_7712224_SNP [dm3] 3R_11886502_SNP [dm6]	G	A	1.891e^-4	0.987	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7753709	2L_7753709_SNP [dm3] 2L_7753709_SNP [dm6]	A	C	1.917e^-4	0.987	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2R	11406866	2R_11406866_SNP [dm3] 2R_15519361_SNP [dm6]	G	A	1.917e^-4	0.987	SYNONYMOUS_CODING Khc-73
X	8294200	X_8294200_SNP [dm3] X_8400167_SNP [dm6]	G	A	1.918e^-4	0.987	SYNONYMOUS_CODING CG10555	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15244538	3L_15244538_SNP [dm3] 3L_15251438_SNP [dm6]	C	T	1.922e^-4	0.987	INTERGENIC
3R	21845201	3R_21845201_SNP [dm3] 3R_26019479_SNP [dm6]	A	T	1.933e^-4	0.987	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22144214	3R_22144214_SNP [dm3] 3R_26318492_SNP [dm6]	C	T	1.936e^-4	0.987	UTR_5_PRIME CG33970
X	5582493	X_5582493_SNP [dm3] X_5688460_SNP [dm6]	A	G	1.940e^-4	0.987	SPLICE_SITE_REGION CG3160 INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19305983	3L_19305983_SNP [dm3] 3L_19312883_SNP [dm6]	T	C	1.941e^-4	0.987	INTRON pip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16147913	X_16147913_SNP [dm3] X_16253880_SNP [dm6]	G	A	1.945e^-4	0.987	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9696037	2R_9696037_SNP [dm3] 2R_13808532_SNP [dm6]	A	C	1.949e^-4	0.987	INTRON stj
3R	11898706	3R_11898706_SNP [dm3] 3R_16072984_SNP [dm6]	G	C	1.950e^-4	0.987	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10014961	2L_10014961_SNP [dm3] 2L_10014961_SNP [dm6]	A	T	1.951e^-4	0.987	NON_SYNONYMOUS_CODING CG13131
2R	12811468	2R_12811468_SNP [dm3] 2R_16923963_SNP [dm6]	G	C	1.955e^-4	0.987	UPSTREAM Pkc53E INTERGENIC
3R	18835091	3R_18835091_SNP [dm3] 3R_23009369_SNP [dm6]	T	A	1.970e^-4	0.987	INTRON CG34375
2R	12807975	2R_12807975_SNP [dm3] 2R_16920470_SNP [dm6]	A	C	1.986e^-4	0.987	INTERGENIC
2R	12807976	2R_12807976_SNP [dm3] 2R_16920471_SNP [dm6]	A	T	1.986e^-4	0.987	INTERGENIC
2R	12807983	2R_12807983_SNP [dm3] 2R_16920478_SNP [dm6]	G	A	1.986e^-4	0.987	INTERGENIC
3R	15363581	3R_15363581_SNP [dm3] 3R_19537859_SNP [dm6]	C	G	1.990e^-4	0.987	INTRON Dys
3R	10246101	3R_10246101_DEL [dm3] 3R_14420379_DEL [dm6]	GCCAACAAGG	G	1.993e^-4	0.987	INTRON cv-c & 1 other	TF binding site mE1_TFBS_cad
2L	974115	2L_974115_SNP [dm3] 2L_974115_SNP [dm6]	C	A	1.995e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	6166421	2L_6166421_SNP [dm3] 2L_6166421_SNP [dm6]	T	G	2.000e^-4	0.987	INTERGENIC
3R	24674386	3R_24674386_SNP [dm3] 3R_28848664_SNP [dm6]	G	A	2.001e^-4	0.987	INTRON spg
X	3522610	X_3522610_SNP [dm3] X_3628577_SNP [dm6]	G	C	2.003e^-4	0.987	INTRON AstA-R1
2R	18392866	2R_18392866_SNP [dm3] 2R_22505361_SNP [dm6]	A	T	2.003e^-4	0.987	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18594627	3R_18594627_SNP [dm3] 3R_22768905_SNP [dm6]	A	T	2.034e^-4	0.987	UTR_3_PRIME CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2R	12810151	2R_12810151_SNP [dm3] 2R_16922646_SNP [dm6]	G	A	2.038e^-4	0.987	INTERGENIC
3L	15267642	3L_15267642_SNP [dm3] 3L_15274542_SNP [dm6]	A	G	2.041e^-4	0.987	INTERGENIC
X	20949400	X_20949400_SNP [dm3] X_21078373_SNP [dm6]	G	C	2.043e^-4	0.987	UTR_3_PRIME bves INTRON bves
3R	20496113	3R_20496113_SNP [dm3] 3R_24670391_SNP [dm6]	G	A	2.047e^-4	0.987	INTRON slo	TF binding site mE1_TFBS_cad
3L	10093644	3L_10093644_SNP [dm3] 3L_10100544_SNP [dm6]	A	G	2.050e^-4	0.987	INTRON dpr6 & 1 other
X	5582556	X_5582556_SNP [dm3] X_5688523_SNP [dm6]	C	T	2.051e^-4	0.987	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2677900	3L_2677900_SNP [dm3] 3L_2677900_SNP [dm6]	T	C	2.058e^-4	0.987	INTRON Fife
2R	20031790	2R_20031790_SNP [dm3] 2R_24144267_SNP [dm6]	G	C	2.060e^-4	0.987	INTRON Dat
3R	8486918	3R_8486918_SNP [dm3] 3R_12661196_SNP [dm6]	A	G	2.072e^-4	0.987	DOWNSTREAM CR45586 & 1 other INTERGENIC
3R	13186864	3R_13186864_SNP [dm3] 3R_17361142_SNP [dm6]	A	T	2.081e^-4	0.987	INTRON beat-IIa
2R	7022322	2R_7022322_SNP [dm3] 2R_11134817_SNP [dm6]	T	G	2.093e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	11476913	3L_11476913_DEL [dm3] 3L_11483813_DEL [dm6]	GTG	G	2.101e^-4	0.987	INTERGENIC
2L	1094905	2L_1094905_SNP [dm3] 2L_1094905_SNP [dm6]	C	A	2.106e^-4	0.987	INTRON CG4629
2R	6489063	2R_6489063_SNP [dm3] 2R_10601558_SNP [dm6]	T	G	2.118e^-4	0.987	INTRON psq
2R	7708737	2R_7708737_SNP [dm3] 2R_11821232_SNP [dm6]	A	G	2.120e^-4	0.987	INTERGENIC
2R	10556497	2R_10556497_SNP [dm3] 2R_14668992_SNP [dm6]	A	G	2.122e^-4	0.987	NON_SYNONYMOUS_CODING CG12866
2R	13846553	2R_13846553_SNP [dm3] 2R_17959048_SNP [dm6]	C	A	2.125e^-4	0.987	INTERGENIC
3R	13967566	3R_13967566_SNP [dm3] 3R_18141844_SNP [dm6]	T	C	2.130e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	17370716	3R_17370716_SNP [dm3] 3R_21544994_SNP [dm6]	A	T	2.139e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	4115223	3L_4115223_DEL [dm3] 3L_4115223_DEL [dm6]	AATGCA	A	2.141e^-4	0.987	INTRON Chd64
3R	18887052	3R_18887052_SNP [dm3] 3R_23061330_SNP [dm6]	C	A	2.141e^-4	0.987	UPSTREAM Ublcp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13980960	2R_13980960_SNP [dm3] 2R_18093455_SNP [dm6]	A	C	2.143e^-4	0.987	SYNONYMOUS_CODING CG34386 DOWNSTREAM CG5757	TF binding site BDTNP1_TFBS_bcd
2R	11929271	2R_11929271_SNP [dm3] 2R_16041766_SNP [dm6]	G	T	2.168e^-4	0.987	INTRON SP2353	TF binding site mE1_TFBS_chinmo
3R	18835676	3R_18835676_SNP [dm3] 3R_23009954_SNP [dm6]	G	A	2.186e^-4	0.987	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4895850	3L_4895850_SNP [dm3] 3L_4895850_SNP [dm6]	A	T	2.198e^-4	0.987	DOWNSTREAM CG17150 INTERGENIC
2R	14175466	2R_14175466_DEL [dm3] 2R_18287961_DEL [dm6]	GG	G	2.210e^-4	0.987	UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3154997	2L_3154997_SNP [dm3] 2L_3154997_SNP [dm6]	A	C	2.220e^-4	0.987	INTRON Mad
3R	23185263	3R_23185263_INS [dm3] 3R_27359541_INS [dm6]	T	TCT	2.227e^-4	0.987	INTRON CG42534
3R	26106584	3R_26106584_SNP [dm3] 3R_30280862_SNP [dm6]	C	T	2.230e^-4	0.987	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6008560	3L_6008560_SNP [dm3] 3L_6015460_SNP [dm6]	C	A	2.237e^-4	0.987	INTRON PVRAP
3L	3009216	3L_3009216_SNP [dm3] 3L_3009216_SNP [dm6]	T	C	2.237e^-4	0.987	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3L	10610910	3L_10610910_SNP [dm3] 3L_10617810_SNP [dm6]	G	T	2.239e^-4	0.987	INTERGENIC
2R	11406947	2R_11406947_SNP [dm3] 2R_15519442_SNP [dm6]	T	C	2.240e^-4	0.987	SYNONYMOUS_CODING Khc-73
2L	7491974	2L_7491974_SNP [dm3] 2L_7491974_SNP [dm6]	T	C	2.245e^-4	0.987	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	7559406	3L_7559406_SNP [dm3] 3L_7566306_SNP [dm6]	T	C	2.251e^-4	0.987	SYNONYMOUS_CODING frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7712201	3R_7712201_SNP [dm3] 3R_11886479_SNP [dm6]	G	A	2.252e^-4	0.987	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	13166543	3R_13166543_SNP [dm3] 3R_17340821_SNP [dm6]	A	C	2.253e^-4	0.987	INTRON beat-IIa
2L	13554566	2L_13554566_SNP [dm3] 2L_13554566_SNP [dm6]	G	T	2.259e^-4	0.987	INTRON kuz	TF binding site BDTNP1_TFBS_dl
2R	6238436	2R_6238436_SNP [dm3] 2R_10350931_SNP [dm6]	A	G	2.262e^-4	0.987	DOWNSTREAM CG43172 & 1 other INTRON CG42732
2R	10699259	2R_10699259_SNP [dm3] 2R_14811754_SNP [dm6]	C	T	2.266e^-4	0.987	INTERGENIC	regulatory region REDfly_CRMs
X	12459540	X_12459540_SNP [dm3] X_12565507_SNP [dm6]	G	A	2.273e^-4	0.987	UTR_5_PRIME CG43921
X	16216396	X_16216396_SNP [dm3] X_16322363_SNP [dm6]	C	T	2.277e^-4	0.987	SYNONYMOUS_CODING CG9917 UPSTREAM CG32579	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16494548	2L_16494548_SNP [dm3] 2L_16494548_SNP [dm6]	G	C	2.280e^-4	0.987	INTRON Tpr2	TF binding site mE1_TFBS_bab1
3L	8033805	3L_8033805_SNP [dm3] 3L_8040705_SNP [dm6]	A	C	2.284e^-4	0.987	INTRON nmo
3R	21486868	3R_21486868_SNP [dm3] 3R_25661146_SNP [dm6]	T	C	2.300e^-4	0.987	UTR_5_PRIME Tnks UPSTREAM RASSF8 DOWNSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	20405317	X_20405317_SNP [dm3] X_20534290_SNP [dm6]	T	A	2.303e^-4	0.987	INTERGENIC
3R	18609895	3R_18609895_SNP [dm3] 3R_22784173_SNP [dm6]	G	A	2.306e^-4	0.987	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18509012	2R_18509012_SNP [dm3] 2R_22621507_SNP [dm6]	T	A	2.313e^-4	0.987	INTRON CG33143	TF binding site mE1_TFBS_inv
3L	7518061	3L_7518061_SNP [dm3] 3L_7524961_SNP [dm6]	C	T	2.315e^-4	0.987	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5581003	X_5581003_SNP [dm3] X_5686970_SNP [dm6]	G	A	2.315e^-4	0.987	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5582502	X_5582502_SNP [dm3] X_5688469_SNP [dm6]	G	A	2.315e^-4	0.987	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10707751	2R_10707751_SNP [dm3] 2R_14820246_SNP [dm6]	C	A	2.318e^-4	0.987	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	16918647	2R_16918647_SNP [dm3] 2R_21031142_SNP [dm6]	A	G	2.319e^-4	0.987	INTERGENIC
3L	8424018	3L_8424018_SNP [dm3] 3L_8430918_SNP [dm6]	C	A	2.324e^-4	0.987	UTR_3_PRIME Cbl
X	15156573	X_15156573_INS [dm3] X_15262540_INS [dm6]	T	TTC	2.338e^-4	0.987	INTERGENIC
X	16218279	X_16218279_SNP [dm3] X_16324246_SNP [dm6]	C	T	2.341e^-4	0.987	INTRON CG32579	TF binding site BDTNP1_TFBS_dl
3L	12556601	3L_12556601_SNP [dm3] 3L_12563501_SNP [dm6]	C	T	2.346e^-4	0.987	INTRON sowah
2L	16883710	2L_16883710_SNP [dm3] 2L_16883710_SNP [dm6]	C	T	2.357e^-4	0.987	INTRON CG31743 & 1 other
3R	2720850	3R_2720850_SNP [dm3] 3R_6895128_SNP [dm6]	C	T	2.359e^-4	0.987	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	8526595	3R_8526595_SNP [dm3] 3R_12700873_SNP [dm6]	G	A	2.361e^-4	0.987	INTRON Past1
2R	20406969	2R_20406969_SNP [dm3] 2R_24519446_SNP [dm6]	G	T	2.369e^-4	0.987	SYNONYMOUS_CODING Ir60d DOWNSTREAM Ir60c	TF binding site mE1_TFBS_cad
X	21940810	X_21940810_SNP [dm3] X_22538974_SNP [dm6]	C	A	2.371e^-4	0.987	INTRON CG17600 & 1 other
2R	8197322	2R_8197322_SNP [dm3] 2R_12309817_SNP [dm6]	C	G	2.376e^-4	0.987	NON_SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
2L	14915291	2L_14915291_SNP [dm3] 2L_14915291_SNP [dm6]	C	T	2.377e^-4	0.987	INTRON CG42313
2R	18976345	2R_18976345_SNP [dm3] 2R_23088822_SNP [dm6]	G	C	2.381e^-4	0.987	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	596666	2L_596666_SNP [dm3] 2L_596666_SNP [dm6]	C	A	2.386e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	8484317	3R_8484317_SNP [dm3] 3R_12658595_SNP [dm6]	G	T	2.389e^-4	0.987	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15076771	2L_15076771_SNP [dm3] 2L_15076771_SNP [dm6]	G	A	2.391e^-4	0.987	INTRON CG15270
2R	10707565	2R_10707565_SNP [dm3] 2R_14820060_SNP [dm6]	G	A	2.393e^-4	0.987	UPSTREAM CG10202 INTERGENIC
3R	17370677	3R_17370677_SNP [dm3] 3R_21544955_SNP [dm6]	G	T	2.396e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	15076818	2L_15076818_SNP [dm3] 2L_15076818_SNP [dm6]	T	G	2.398e^-4	0.987	INTRON CG15270
2L	8526190	2L_8526190_SNP [dm3] 2L_8526190_SNP [dm6]	T	A	2.400e^-4	0.987	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2L	8526214	2L_8526214_SNP [dm3] 2L_8526214_SNP [dm6]	A	T	2.400e^-4	0.987	UTR_3_PRIME lmgB & 1 other DOWNSTREAM lmgA & 2 others
2R	7022329	2R_7022329_SNP [dm3] 2R_11134824_SNP [dm6]	C	T	2.414e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	8544125	3R_8544125_SNP [dm3] 3R_12718403_SNP [dm6]	C	G	2.415e^-4	0.987	INTRON Men
X	12903027	X_12903027_INS [dm3] X_13008994_INS [dm6]	T	TA	2.430e^-4	0.987	INTRON rad
3L	8425631	3L_8425631_SNP [dm3] 3L_8432531_SNP [dm6]	T	C	2.438e^-4	0.987	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
X	15043301	X_15043301_DEL [dm3] X_15149268_DEL [dm6]	CCAAAAC	C	2.439e^-4	0.987	INTRON CG9095
2L	8637600	2L_8637600_SNP [dm3] 2L_8637600_SNP [dm6]	T	C	2.451e^-4	0.987	INTRON Sema-1a
2R	10713230	2R_10713230_SNP [dm3] 2R_14825725_SNP [dm6]	C	T	2.456e^-4	0.987	INTERGENIC
3R	3286374	3R_3286374_SNP [dm3] 3R_7460652_SNP [dm6]	A	C	2.462e^-4	0.987	INTERGENIC
3L	3103659	3L_3103659_SNP [dm3] 3L_3103659_SNP [dm6]	A	G	2.476e^-4	0.987	INTRON Cht7
X	5663550	X_5663550_SNP [dm3] X_5769517_SNP [dm6]	C	T	2.494e^-4	0.987	INTRON CG42699 & 1 other
2R	6238621	2R_6238621_DEL [dm3] 2R_10351116_DEL [dm6]	CAC	T	2.507e^-4	0.987	DOWNSTREAM CG43172 & 1 other INTRON CG42732
3L	4237888	3L_4237888_SNP [dm3] 3L_4237888_SNP [dm6]	C	G	2.508e^-4	0.987	INTERGENIC
X	11825825	X_11825825_SNP [dm3] X_11931792_SNP [dm6]	G	A	2.524e^-4	0.987	UTR_3_PRIME cac UPSTREAM CG10362 DOWNSTREAM cac
3L	9541907	3L_9541907_SNP [dm3] 3L_9548807_SNP [dm6]	C	T	2.532e^-4	0.987	INTRON CG42673
3R	26102122	3R_26102122_SNP [dm3] 3R_30276400_SNP [dm6]	T	A	2.534e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	3567641	2L_3567641_SNP [dm3] 2L_3567641_SNP [dm6]	T	A	2.544e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6619220	X_6619220_SNP [dm3] X_6725187_SNP [dm6]	C	A	2.544e^-4	0.987	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	12452073	2R_12452073_SNP [dm3] 2R_16564568_SNP [dm6]	T	A	2.550e^-4	0.987	INTRON DAT	TF binding site mE1_TFBS_HSA
3R	24427213	3R_24427213_SNP [dm3] 3R_28601491_SNP [dm6]	G	C	2.550e^-4	0.987	UPSTREAM snoRNA:Psi28S-3405a & 4 others INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	5728369	X_5728369_SNP [dm3] X_5834336_SNP [dm6]	C	A	2.559e^-4	0.987	INTRON CG15765
3R	18835115	3R_18835115_SNP [dm3] 3R_23009393_SNP [dm6]	G	C	2.566e^-4	0.987	INTRON CG34375
2R	10557747	2R_10557747_SNP [dm3] 2R_14670242_SNP [dm6]	C	T	2.571e^-4	0.987	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
X	16077536	X_16077536_DEL [dm3] X_16183503_DEL [dm6]	ACA	A	2.575e^-4	0.987	INTERGENIC
X	16077540	X_16077540_SNP [dm3] X_16183507_SNP [dm6]	T	C	2.575e^-4	0.987	INTERGENIC
3L	3894193	3L_3894193_SNP [dm3] 3L_3894193_SNP [dm6]	C	A	2.575e^-4	0.987	NON_SYNONYMOUS_CODING Fie UPSTREAM snRNA:U11 DOWNSTREAM Gr63a
X	6619746	X_6619746_SNP [dm3] X_6725713_SNP [dm6]	T	C	2.582e^-4	0.987	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	12807963	2R_12807963_DEL [dm3] 2R_16920458_DEL [dm6]	TT	T	2.583e^-4	0.987	INTERGENIC
2R	9693382	2R_9693382_SNP [dm3] 2R_13805877_SNP [dm6]	G	A	2.585e^-4	0.987	UTR_5_PRIME stj UPSTREAM stj DOWNSTREAM Cpr50Cb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	19665827	X_19665827_SNP [dm3] X_19771794_SNP [dm6]	G	A	2.597e^-4	0.987	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18884892	3R_18884892_SNP [dm3] 3R_23059170_SNP [dm6]	G	A	2.598e^-4	0.987	SYNONYMOUS_CODING sav UPSTREAM CG17119	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8670249	2L_8670249_SNP [dm3] 2L_8670249_SNP [dm6]	C	A	2.598e^-4	0.987	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
X	7280567	X_7280567_SNP [dm3] X_7386534_SNP [dm6]	T	G	2.598e^-4	0.987	INTRON CG1677 & 1 other
2R	13981270	2R_13981270_SNP [dm3] 2R_18093765_SNP [dm6]	T	C	2.599e^-4	0.987	UTR_3_PRIME CG5757 DOWNSTREAM CG34386	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2R	10772787	2R_10772787_SNP [dm3] 2R_14885282_SNP [dm6]	A	G	2.604e^-4	0.987	UTR_3_PRIME Cyp6a21	TF binding site mE1_TFBS_cnc
2R	10785398	2R_10785398_SNP [dm3] 2R_14897893_SNP [dm6]	T	C	2.622e^-4	0.987	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	14896296	2R_14896296_SNP [dm3] 2R_19008791_SNP [dm6]	A	G	2.634e^-4	0.987	UTR_3_PRIME tn
2R	17992077	2R_17992077_SNP [dm3] 2R_22104572_SNP [dm6]	T	G	2.654e^-4	0.987	NON_SYNONYMOUS_CODING CG6613
3R	18884903	3R_18884903_SNP [dm3] 3R_23059181_SNP [dm6]	A	G	2.661e^-4	0.987	SYNONYMOUS_CODING sav UPSTREAM CG17119	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16410331	3R_16410331_SNP [dm3] 3R_20584609_SNP [dm6]	G	A	2.668e^-4	0.987	INTRON CG16953
2L	7360919	2L_7360919_SNP [dm3] 2L_7360919_SNP [dm6]	C	T	2.677e^-4	0.987	INTERGENIC
X	12953534	X_12953534_INS [dm3] X_13059501_INS [dm6]	A	AA	2.677e^-4	0.987	INTRON rad
3L	8287463	3L_8287463_SNP [dm3] 3L_8294363_SNP [dm6]	C	A	2.679e^-4	0.987	INTRON CG7201
2L	7017799	2L_7017799_SNP [dm3] 2L_7017799_SNP [dm6]	G	C	2.680e^-4	0.987	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
3R	18835161	3R_18835161_SNP [dm3] 3R_23009439_SNP [dm6]	T	C	2.691e^-4	0.987	INTRON CG34375
2L	10752032	2L_10752032_SNP [dm3] 2L_10752032_SNP [dm6]	A	T	2.714e^-4	0.987	INTRON CG17124	TF binding site mE1_TFBS_cad
2L	18274875	2L_18274875_SNP [dm3] 2L_18274875_SNP [dm6]	A	C	2.715e^-4	0.987	INTRON CG42750
2R	11733663	2R_11733663_SNP [dm3] 2R_15846158_SNP [dm6]	G	C	2.721e^-4	0.987	UTR_5_PRIME CG8249 INTRON tun	TF binding site mE1_TFBS_HSA
3R	15013642	3R_15013642_SNP [dm3] 3R_19187920_SNP [dm6]	G	C	2.723e^-4	0.987	INTRON CG31475
2L	12026398	2L_12026398_SNP [dm3] 2L_12026398_SNP [dm6]	T	C	2.727e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4076742	3L_4076742_SNP [dm3] 3L_4076742_SNP [dm6]	T	G	2.728e^-4	0.987	INTRON Gad1
3R	18164929	3R_18164929_SNP [dm3] 3R_22339207_SNP [dm6]	G	A	2.731e^-4	0.987	INTRON CG5388	TF binding site mE1_TFBS_Trl
3R	21297868	3R_21297868_SNP [dm3] 3R_25472146_SNP [dm6]	A	G	2.737e^-4	0.987	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6438047	2R_6438047_INS [dm3] 2R_10550542_INS [dm6]	T	TC	2.740e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8033870	3L_8033870_INS [dm3] 3L_8040770_INS [dm6]	A	AA	2.753e^-4	0.987	INTRON nmo
3L	12281534	3L_12281534_SNP [dm3] 3L_12288434_SNP [dm6]	G	A	2.754e^-4	0.987	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18142914	2R_18142914_SNP [dm3] 2R_22255409_SNP [dm6]	G	A	2.761e^-4	0.987	INTRON dve	TF binding site mE1_TFBS_sens
2L	3154983	2L_3154983_SNP [dm3] 2L_3154983_SNP [dm6]	A	G	2.766e^-4	0.987	INTRON Mad
3R	8537714	3R_8537714_SNP [dm3] 3R_12711992_SNP [dm6]	A	C	2.771e^-4	0.987	SYNONYMOUS_CODING mus308	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8525941	3R_8525941_SNP [dm3] 3R_12700219_SNP [dm6]	G	T	2.776e^-4	0.987	INTRON Past1
2L	10258221	2L_10258221_SNP [dm3] 2L_10258221_SNP [dm6]	T	C	2.782e^-4	0.987	INTRON Pten
2R	8853307	2R_8853307_SNP [dm3] 2R_12965802_SNP [dm6]	C	T	2.783e^-4	0.987	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2999463	2R_2999463_SNP [dm3] 2R_7111958_SNP [dm6]	A	G	2.786e^-4	0.987	INTRON esn	TF binding site mE1_TFBS_inv
2R	3144886	2R_3144886_SNP [dm3] 2R_7257381_SNP [dm6]	C	T	2.789e^-4	0.987	DOWNSTREAM CR45280 INTERGENIC
3L	5944325	3L_5944325_SNP [dm3] 3L_5951225_SNP [dm6]	G	C	2.796e^-4	0.987	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	769478	2L_769478_SNP [dm3] 2L_769478_SNP [dm6]	G	A	2.808e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5370601	3L_5370601_SNP [dm3] 3L_5377501_SNP [dm6]	G	T	2.808e^-4	0.987	UPSTREAM CR45743 INTERGENIC
2R	17444451	2R_17444451_SNP [dm3] 2R_21556946_SNP [dm6]	C	T	2.811e^-4	0.987	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15378377	3R_15378377_SNP [dm3] 3R_19552655_SNP [dm6]	C	T	2.845e^-4	0.987	INTRON Dys
2L	9158939	2L_9158939_DEL [dm3] 2L_9158939_DEL [dm6]	TGGATCT	T	2.849e^-4	0.987	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	17092543	3L_17092543_SNP [dm3] 3L_17099443_SNP [dm6]	G	A	2.862e^-4	0.987	INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5089992	3R_5089992_SNP [dm3] 3R_9264270_SNP [dm6]	A	G	2.864e^-4	0.987	UPSTREAM sage DOWNSTREAM Aats-trp INTERGENIC
3R	15104329	3R_15104329_SNP [dm3] 3R_19278607_SNP [dm6]	T	C	2.864e^-4	0.987	DOWNSTREAM CR44173 INTERGENIC
X	5922007	X_5922007_SNP [dm3] X_6027974_SNP [dm6]	A	T	2.864e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4207638	2L_4207638_SNP [dm3] 2L_4207638_SNP [dm6]	T	C	2.864e^-4	0.987	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19072995	X_19072995_SNP [dm3] X_19178962_SNP [dm6]	T	C	2.871e^-4	0.987	INTRON CG7556	TF binding site BDTNP1_TFBS_dl
X	972653	X_972653_SNP [dm3] X_1078620_SNP [dm6]	T	A	2.872e^-4	0.987	INTRON CR44779 & 1 other
2R	9100694	2R_9100694_SNP [dm3] 2R_13213189_SNP [dm6]	C	A	2.875e^-4	0.987	SYNONYMOUS_CODING AQP UPSTREAM CG30058 & 2 others
3L	2810541	3L_2810541_SNP [dm3] 3L_2810541_SNP [dm6]	G	A	2.877e^-4	0.987	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	19587567	2L_19587567_SNP [dm3] 2L_19587567_SNP [dm6]	C	T	2.886e^-4	0.987	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26115286	3R_26115286_INS [dm3] 3R_30289564_INS [dm6]	T	TC	2.895e^-4	0.987	INTRON hdc
3L	2687545	3L_2687545_SNP [dm3] 3L_2687545_SNP [dm6]	A	G	2.899e^-4	0.987	INTRON Fife
2R	10695217	2R_10695217_SNP [dm3] 2R_14807712_SNP [dm6]	T	C	2.912e^-4	0.987	UPSTREAM kn & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	15013643	3R_15013643_DEL [dm3] 3R_19187921_DEL [dm6]	AATCC	A	2.921e^-4	0.987	INTRON CG31475
3L	3913380	3L_3913380_SNP [dm3] 3L_3913380_SNP [dm6]	G	C	2.922e^-4	0.987	INTRON Eip63F-1
3L	7169940	3L_7169940_SNP [dm3] 3L_7176840_SNP [dm6]	T	C	2.944e^-4	0.987	INTRON Dscam2
3L	6556992	3L_6556992_SNP [dm3] 3L_6563892_SNP [dm6]	A	G	2.947e^-4	0.987	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12931632	3L_12931632_SNP [dm3] 3L_12938532_SNP [dm6]	A	G	2.950e^-4	0.987	INTERGENIC
2L	7904894	2L_7904894_SNP [dm3] 2L_7904894_SNP [dm6]	A	T	2.956e^-4	0.987	INTRON Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18971810	2R_18971810_SNP [dm3] 2R_23084287_SNP [dm6]	T	C	2.963e^-4	0.987	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	15147993	2L_15147993_DEL [dm3] 2L_15147993_DEL [dm6]	TGTGCAATATAT...	T	2.964e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7287282	3L_7287282_SNP [dm3] 3L_7294182_SNP [dm6]	T	A	2.968e^-4	0.987	INTRON unc-13-4A
3R	10213677	3R_10213677_SNP [dm3] 3R_14387955_SNP [dm6]	G	T	2.974e^-4	0.987	INTERGENIC
3L	15273575	3L_15273575_SNP [dm3] 3L_15280475_SNP [dm6]	G	A	2.996e^-4	0.987	INTERGENIC
3L	2677882	3L_2677882_INS [dm3] 3L_2677882_INS [dm6]	A	AA	3.002e^-4	0.987	INTRON Fife
X	14679963	X_14679963_SNP [dm3] X_14785930_SNP [dm6]	C	A	3.009e^-4	0.987	SYNONYMOUS_CODING Ag5r UPSTREAM CR45522
3L	12281536	3L_12281536_SNP [dm3] 3L_12288436_SNP [dm6]	A	G	3.016e^-4	0.987	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10710414	2R_10710414_SNP [dm3] 2R_14822909_SNP [dm6]	A	T	3.021e^-4	0.987	DOWNSTREAM CR45329 INTERGENIC
2R	18392528	2R_18392528_SNP [dm3] 2R_22505023_SNP [dm6]	G	C	3.025e^-4	0.987	INTRON px	TF binding site BDTNP1_TFBS_twi
2R	12801784	2R_12801784_SNP [dm3] 2R_16914279_SNP [dm6]	G	T	3.028e^-4	0.987	INTERGENIC
3R	6401652	3R_6401652_SNP [dm3] 3R_10575930_SNP [dm6]	G	T	3.042e^-4	0.987	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7250033	2L_7250033_SNP [dm3] 2L_7250033_SNP [dm6]	G	T	3.042e^-4	0.987	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26107849	3R_26107849_SNP [dm3] 3R_30282127_SNP [dm6]	C	T	3.043e^-4	0.987	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6238774	2R_6238774_INS [dm3] 2R_10351269_INS [dm6]	G	GG	3.053e^-4	0.987	DOWNSTREAM CG43172 & 1 other INTRON CG42732
2L	9888384	2L_9888384_INS [dm3] 2L_9888384_INS [dm6]	T	TCCT	3.056e^-4	0.987	DOWNSTREAM CR44701 INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15814869	2L_15814869_SNP [dm3] 2L_15814869_SNP [dm6]	C	T	3.057e^-4	0.987	INTERGENIC
3L	1750541	3L_1750541_SNP [dm3] 3L_1750541_SNP [dm6]	G	A	3.067e^-4	0.987	SYNONYMOUS_CODING CG13921	TF binding site mE1_TFBS_chinmo
X	9885800	X_9885800_SNP [dm3] X_9991767_SNP [dm6]	A	T	3.075e^-4	0.987	INTRON CG32694
2R	18481099	2R_18481099_SNP [dm3] 2R_22593594_SNP [dm6]	G	A	3.079e^-4	0.987	UPSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20462328	X_20462328_SNP [dm3] X_20591301_SNP [dm6]	T	C	3.084e^-4	0.987	UTR_3_PRIME RunxA
2L	6904352	2L_6904352_SNP [dm3] 2L_6904352_SNP [dm6]	C	T	3.095e^-4	0.987	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3134418	2R_3134418_SNP [dm3] 2R_7246913_SNP [dm6]	C	T	3.102e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1244488	2L_1244488_SNP [dm3] 2L_1244488_SNP [dm6]	A	T	3.109e^-4	0.987	INTERGENIC
2L	15814532	2L_15814532_SNP [dm3] 2L_15814532_SNP [dm6]	T	G	3.110e^-4	0.987	INTERGENIC
3L	6150361	3L_6150361_SNP [dm3] 3L_6157261_SNP [dm6]	C	T	3.120e^-4	0.987	SYNONYMOUS_CODING CG13297 DOWNSTREAM Cpr65Ay
3R	15359844	3R_15359844_SNP [dm3] 3R_19534122_SNP [dm6]	G	A	3.124e^-4	0.987	INTRON Dys
3L	4364520	3L_4364520_SNP [dm3] 3L_4364520_SNP [dm6]	C	T	3.128e^-4	0.987	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9539893	3L_9539893_SNP [dm3] 3L_9546793_SNP [dm6]	G	T	3.147e^-4	0.987	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	15358786	3R_15358786_SNP [dm3] 3R_19533064_SNP [dm6]	T	A	3.153e^-4	0.987	INTRON Dys
2L	13554423	2L_13554423_SNP [dm3] 2L_13554423_SNP [dm6]	C	T	3.155e^-4	0.987	INTRON kuz	TF binding site BDTNP1_TFBS_twi
X	8387541	X_8387541_SNP [dm3] X_8493508_SNP [dm6]	T	C	3.157e^-4	0.987	INTRON CG33181
X	8387548	X_8387548_SNP [dm3] X_8493515_SNP [dm6]	G	T	3.157e^-4	0.987	INTRON CG33181
3L	9343244	3L_9343244_SNP [dm3] 3L_9350144_SNP [dm6]	T	C	3.157e^-4	0.987	DOWNSTREAM UGP INTRON PGRP-LF
3R	8381567	3R_8381567_SNP [dm3] 3R_12555845_SNP [dm6]	G	A	3.161e^-4	0.987	INTRON Octbeta2R
2L	4731385	2L_4731385_SNP [dm3] 2L_4731385_SNP [dm6]	A	G	3.169e^-4	0.987	INTERGENIC
3L	21198751	3L_21198751_DEL [dm3] 3L_21205651_DEL [dm6]	CTAAAGTGAACCCAACC...	C	3.176e^-4	0.987	UTR_5_PRIME CG10512 INTRON CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	3056978	2R_3056978_SNP [dm3] 2R_7169473_SNP [dm6]	T	A	3.184e^-4	0.987	INTRON pk
X	21940609	X_21940609_SNP [dm3] X_22538773_SNP [dm6]	A	T	3.194e^-4	0.987	INTRON CG17600 & 1 other
X	19072667	X_19072667_DEL [dm3] X_19178634_DEL [dm6]	GAG	T	3.204e^-4	0.987	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	11969585	2R_11969585_SNP [dm3] 2R_16082080_SNP [dm6]	A	G	3.212e^-4	0.987	UTR_3_PRIME Dg
3L	2587721	3L_2587721_SNP [dm3] 3L_2587721_SNP [dm6]	G	T	3.217e^-4	0.987	UTR_5_PRIME RpL8 INTRON RpL8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	15359322	3R_15359322_SNP [dm3] 3R_19533600_SNP [dm6]	G	A	3.226e^-4	0.987	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13966103	2R_13966103_DEL [dm3] 2R_18078598_DEL [dm6]	TGT	T	3.228e^-4	0.987	INTRON CG34386
2L	3635873	2L_3635873_SNP [dm3] 2L_3635873_SNP [dm6]	A	G	3.229e^-4	0.987	INTRON for
2R	10699208	2R_10699208_SNP [dm3] 2R_14811703_SNP [dm6]	G	A	3.240e^-4	0.987	INTERGENIC
3L	7587400	3L_7587400_SNP [dm3] 3L_7594300_SNP [dm6]	C	T	3.240e^-4	0.987	INTRON CG33275
2R	11811195	2R_11811195_SNP [dm3] 2R_15923690_SNP [dm6]	T	A	3.256e^-4	0.987	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	596575	2L_596575_DEL [dm3] 2L_596575_DEL [dm6]	GTTGAGAATGGAAAAAGAG...	G	3.262e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_inv
X	19072605	X_19072605_SNP [dm3] X_19178572_SNP [dm6]	A	G	3.265e^-4	0.987	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	15453828	2L_15453828_SNP [dm3] 2L_15453828_SNP [dm6]	C	T	3.271e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17925786	2L_17925786_SNP [dm3] 2L_17925786_SNP [dm6]	C	T	3.275e^-4	0.987	INTERGENIC
2R	13982078	2R_13982078_SNP [dm3] 2R_18094573_SNP [dm6]	C	T	3.281e^-4	0.987	UPSTREAM CG5098 DOWNSTREAM CG34386 INTRON CG5757	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4364328	3L_4364328_SNP [dm3] 3L_4364328_SNP [dm6]	A	T	3.283e^-4	0.987	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4364330	3L_4364330_SNP [dm3] 3L_4364330_SNP [dm6]	C	T	3.283e^-4	0.987	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5582443	X_5582443_SNP [dm3] X_5688410_SNP [dm6]	A	G	3.286e^-4	0.987	SPLICE_SITE_REGION CG3160 INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12972471	X_12972471_SNP [dm3] X_13078438_SNP [dm6]	T	G	3.288e^-4	0.987	UTR_3_PRIME rad DOWNSTREAM hep
2L	15072806	2L_15072806_SNP [dm3] 2L_15072806_SNP [dm6]	T	C	3.291e^-4	0.987	SYNONYMOUS_CODING vas DOWNSTREAM vas
2R	7015691	2R_7015691_SNP [dm3] 2R_11128186_SNP [dm6]	A	C	3.291e^-4	0.987	INTERGENIC
2R	13980777	2R_13980777_SNP [dm3] 2R_18093272_SNP [dm6]	C	T	3.297e^-4	0.987	SYNONYMOUS_CODING CG34386 DOWNSTREAM CG5757	TF binding site BDTNP1_TFBS_bcd
2R	14781302	2R_14781302_SNP [dm3] 2R_18893797_SNP [dm6]	A	C	3.315e^-4	0.987	INTRON sano
3L	4594941	3L_4594941_SNP [dm3] 3L_4594941_SNP [dm6]	G	T	3.319e^-4	0.987	SYNONYMOUS_CODING Src64B	TF binding site mE1_TFBS_cad
2R	11794582	2R_11794582_SNP [dm3] 2R_15907077_SNP [dm6]	T	G	3.319e^-4	0.987	INTRON sli
X	20405309	X_20405309_SNP [dm3] X_20534282_SNP [dm6]	T	A	3.323e^-4	0.987	INTERGENIC
2R	18509002	2R_18509002_SNP [dm3] 2R_22621497_SNP [dm6]	G	A	3.325e^-4	0.987	INTRON CG33143	TF binding site mE1_TFBS_inv
2R	10517972	2R_10517972_SNP [dm3] 2R_14630467_SNP [dm6]	G	C	3.337e^-4	0.987	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15360901	3R_15360901_SNP [dm3] 3R_19535179_SNP [dm6]	T	C	3.347e^-4	0.987	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2720828	3R_2720828_SNP [dm3] 3R_6895106_SNP [dm6]	C	T	3.349e^-4	0.987	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	8284233	2L_8284233_SNP [dm3] 2L_8284233_SNP [dm6]	C	G	3.350e^-4	0.987	INTRON Btk29A	TF binding site mE1_TFBS_inv
X	5450589	X_5450589_SNP [dm3] X_5556556_SNP [dm6]	G	A	3.376e^-4	0.987	INTRON Vsx2	TF binding site mE1_TFBS_Kr
3L	9534972	3L_9534972_SNP [dm3] 3L_9541872_SNP [dm6]	T	C	3.381e^-4	0.987	DOWNSTREAM Ir67a INTERGENIC
3L	8159416	3L_8159416_SNP [dm3] 3L_8166316_SNP [dm6]	A	C	3.387e^-4	0.987	UPSTREAM CG13675 INTERGENIC
3R	20324943	3R_20324943_SNP [dm3] 3R_24499221_SNP [dm6]	A	G	3.393e^-4	0.987	INTERGENIC
3R	14844969	3R_14844969_SNP [dm3] 3R_19019247_SNP [dm6]	A	C	3.398e^-4	0.987	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8486923	3R_8486923_SNP [dm3] 3R_12661201_SNP [dm6]	C	T	3.413e^-4	0.987	DOWNSTREAM CR45586 & 1 other INTERGENIC
3R	20132454	3R_20132454_SNP [dm3] 3R_24306732_SNP [dm6]	C	T	3.416e^-4	0.987	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10792442	2R_10792442_SNP [dm3] 2R_14904937_SNP [dm6]	A	G	3.421e^-4	0.987	NON_SYNONYMOUS_CODING CG10249	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8649160	2L_8649160_SNP [dm3] 2L_8649160_SNP [dm6]	A	G	3.422e^-4	0.987	INTRON Sema-1a
3L	1646498	3L_1646498_SNP [dm3] 3L_1646498_SNP [dm6]	A	G	3.424e^-4	0.987	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8032877	3L_8032877_SNP [dm3] 3L_8039777_SNP [dm6]	T	A	3.426e^-4	0.987	INTRON nmo
3R	21482879	3R_21482879_SNP [dm3] 3R_25657157_SNP [dm6]	C	T	3.426e^-4	0.987	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_chinmo
2L	17186251	2L_17186251_SNP [dm3] 2L_17186251_SNP [dm6]	T	C	3.429e^-4	0.987	INTERGENIC
2R	18166067	2R_18166067_INS [dm3] 2R_22278562_INS [dm6]	G	GTG	3.435e^-4	0.987	INTRON dve
2R	17408862	2R_17408862_SNP [dm3] 2R_21521357_SNP [dm6]	T	A	3.452e^-4	0.987	NON_SYNONYMOUS_CODING CG30289 UPSTREAM CG30288	TF binding site BDTNP1_TFBS_dl
3L	7533228	3L_7533228_SNP [dm3] 3L_7540128_SNP [dm6]	C	T	3.453e^-4	0.987	UPSTREAM CG16998 DOWNSTREAM CG32374 & 1 other INTERGENIC
3L	9299253	3L_9299253_SNP [dm3] 3L_9306153_SNP [dm6]	A	G	3.455e^-4	0.987	INTERGENIC
X	12422141	X_12422141_SNP [dm3] X_12528108_SNP [dm6]	A	C	3.458e^-4	0.987	INTRON CG43921
X	12422146	X_12422146_SNP [dm3] X_12528113_SNP [dm6]	G	T	3.458e^-4	0.987	INTRON CG43921
3L	1752641	3L_1752641_SNP [dm3] 3L_1752641_SNP [dm6]	C	T	3.464e^-4	0.987	NON_SYNONYMOUS_CODING Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	10164132	3L_10164132_SNP [dm3] 3L_10171032_SNP [dm6]	C	G	3.465e^-4	0.987	INTRON dpr10
3R	19321372	3R_19321372_SNP [dm3] 3R_23495650_SNP [dm6]	A	G	3.473e^-4	0.987	INTERGENIC
3L	5370558	3L_5370558_SNP [dm3] 3L_5377458_SNP [dm6]	C	G	3.477e^-4	0.987	UPSTREAM CR45743 INTERGENIC
3L	5370582	3L_5370582_SNP [dm3] 3L_5377482_SNP [dm6]	C	T	3.483e^-4	0.987	UPSTREAM CR45743 INTERGENIC
2R	12692002	2R_12692002_SNP [dm3] 2R_16804497_SNP [dm6]	C	T	3.494e^-4	0.987	INTERGENIC
2L	9884618	2L_9884618_SNP [dm3] 2L_9884618_SNP [dm6]	A	T	3.504e^-4	0.987	INTRON nAChRalpha6
2R	3057030	2R_3057030_SNP [dm3] 2R_7169525_SNP [dm6]	A	T	3.505e^-4	0.987	INTRON pk
3L	12931633	3L_12931633_SNP [dm3] 3L_12938533_SNP [dm6]	C	T	3.507e^-4	0.987	INTERGENIC
2R	7021220	2R_7021220_SNP [dm3] 2R_11133715_SNP [dm6]	T	C	3.514e^-4	0.987	INTERGENIC
X	21170349	X_21170349_SNP [dm3] X_21299322_SNP [dm6]	C	A	3.521e^-4	0.987	UPSTREAM mir-2535b INTRON CG1718
3R	13177938	3R_13177938_SNP [dm3] 3R_17352216_SNP [dm6]	G	A	3.524e^-4	0.987	INTRON beat-IIa
3R	13000186	3R_13000186_SNP [dm3] 3R_17174464_SNP [dm6]	C	T	3.533e^-4	0.987	INTRON Mur89F
3R	14051365	3R_14051365_SNP [dm3] 3R_18225643_SNP [dm6]	T	C	3.533e^-4	0.987	NON_SYNONYMOUS_CODING CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3141622	2R_3141622_SNP [dm3] 2R_7254117_SNP [dm6]	T	C	3.534e^-4	0.987	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18347364	2R_18347364_INS [dm3] 2R_22459859_INS [dm6]	A	AA	3.539e^-4	0.987	INTRON CG10384
3R	9997584	3R_9997584_SNP [dm3] 3R_14171862_SNP [dm6]	A	C	3.540e^-4	0.987	UTR_3_PRIME Dop1R1
3R	10318496	3R_10318496_INS [dm3] 3R_14492774_INS [dm6]	T	TTAGATTAGATAGATAGATA...	3.545e^-4	0.987	INTERGENIC
2R	10772786	2R_10772786_SNP [dm3] 2R_14885281_SNP [dm6]	A	G	3.551e^-4	0.987	UTR_3_PRIME Cyp6a21	TF binding site mE1_TFBS_cnc
2R	9535687	2R_9535687_SNP [dm3] 2R_13648182_SNP [dm6]	T	A	3.563e^-4	0.987	INTRON fas
2R	12341092	2R_12341092_SNP [dm3] 2R_16453587_SNP [dm6]	G	A	3.568e^-4	0.987	INTERGENIC
3R	18888101	3R_18888101_SNP [dm3] 3R_23062379_SNP [dm6]	A	G	3.581e^-4	0.987	SYNONYMOUS_CODING Ublcp1 DOWNSTREAM CG17111	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12371136	2L_12371136_SNP [dm3] 2L_12371136_SNP [dm6]	T	G	3.583e^-4	0.987	INTRON bru-2
2R	6821430	2R_6821430_SNP [dm3] 2R_10933925_SNP [dm6]	A	T	3.583e^-4	0.987	INTERGENIC
3L	7957443	3L_7957443_SNP [dm3] 3L_7964343_SNP [dm6]	G	T	3.587e^-4	0.987	INTERGENIC
2L	8649112	2L_8649112_SNP [dm3] 2L_8649112_SNP [dm6]	A	G	3.592e^-4	0.987	INTRON Sema-1a
2R	17304865	2R_17304865_SNP [dm3] 2R_21417360_SNP [dm6]	C	G	3.596e^-4	0.987	UPSTREAM Sdc INTRON Sdc
2R	14279037	2R_14279037_SNP [dm3] 2R_18391532_SNP [dm6]	A	T	3.600e^-4	0.987	UPSTREAM CG15068 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976063	2R_18976063_INS [dm3] 2R_23088540_INS [dm6]	A	AAAACTTAGAGACTCCA...	3.601e^-4	0.987	DOWNSTREAM CG13538 INTERGENIC
2L	9987247	2L_9987247_SNP [dm3] 2L_9987247_SNP [dm6]	T	C	3.602e^-4	0.987	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	12422161	X_12422161_SNP [dm3] X_12528128_SNP [dm6]	T	C	3.608e^-4	0.987	INTRON CG43921
2L	19587363	2L_19587363_SNP [dm3] 2L_19587363_SNP [dm6]	C	T	3.611e^-4	0.987	START_GAINED Lar UTR_5_PRIME Lar DOWNSTREAM CG10366 INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11832215	2R_11832215_SNP [dm3] 2R_15944710_SNP [dm6]	G	A	3.616e^-4	0.987	DOWNSTREAM CG30093 INTRON Cyp4aa1
X	21311065	X_21311065_SNP [dm3] X_21440038_SNP [dm6]	T	A	3.620e^-4	0.987	DOWNSTREAM CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	4364332	3L_4364332_INS [dm3] 3L_4364332_INS [dm6]	A	ATAAAAATATATTA...	3.628e^-4	0.987	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	772898	2L_772898_DEL [dm3] 2L_772898_DEL [dm6]	AA	C	3.642e^-4	0.987	UPSTREAM CG12506 EXON CR44614
3L	2684718	3L_2684718_SNP [dm3] 3L_2684718_SNP [dm6]	A	C	3.642e^-4	0.987	INTRON Fife
2L	9854158	2L_9854158_SNP [dm3] 2L_9854158_SNP [dm6]	A	G	3.647e^-4	0.987	INTRON nAChRalpha6
2L	6070157	2L_6070157_SNP [dm3] 2L_6070157_SNP [dm6]	T	A	3.650e^-4	0.987	NON_SYNONYMOUS_CODING CG9154 UPSTREAM Kr-h2 DOWNSTREAM CG13993	TF binding site mE1_TFBS_sens
2L	7151189	2L_7151189_SNP [dm3] 2L_7151189_SNP [dm6]	C	A	3.655e^-4	0.987	INTRON Pvf3
3L	14540899	3L_14540899_INS [dm3] 3L_14547799_INS [dm6]	T	TTT	3.661e^-4	0.987	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21421672	3L_21421672_SNP [dm3] 3L_21428572_SNP [dm6]	A	G	3.665e^-4	0.987	INTRON barc & 1 other
3L	7559715	3L_7559715_SNP [dm3] 3L_7566615_SNP [dm6]	C	T	3.670e^-4	0.987	SYNONYMOUS_CODING frac INTRON frac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1321771	3L_1321771_SNP [dm3] 3L_1321771_SNP [dm6]	A	G	3.684e^-4	0.987	DOWNSTREAM CG9184 INTRON Myo61F
3L	1321779	3L_1321779_SNP [dm3] 3L_1321779_SNP [dm6]	A	G	3.684e^-4	0.987	DOWNSTREAM CG9184 INTRON Myo61F
2L	13329406	2L_13329406_SNP [dm3] 2L_13329406_SNP [dm6]	T	A	3.684e^-4	0.987	INTRON CG43778
3R	11337076	3R_11337076_SNP [dm3] 3R_15511354_SNP [dm6]	T	C	3.685e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2363003	3L_2363003_SNP [dm3] 3L_2363003_SNP [dm6]	A	T	3.689e^-4	0.987	DOWNSTREAM CG13801 INTERGENIC
2R	10713222	2R_10713222_SNP [dm3] 2R_14825717_SNP [dm6]	A	T	3.692e^-4	0.987	INTERGENIC
3R	20699943	3R_20699943_SNP [dm3] 3R_24874221_SNP [dm6]	G	A	3.702e^-4	0.987	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
3L	15121860	3L_15121860_SNP [dm3] 3L_15128760_SNP [dm6]	A	G	3.712e^-4	0.987	NON_SYNONYMOUS_CODING CG13457 DOWNSTREAM Cep135
2R	12800588	2R_12800588_SNP [dm3] 2R_16913083_SNP [dm6]	T	C	3.715e^-4	0.987	INTERGENIC
X	12617464	X_12617464_DEL [dm3] X_12723431_DEL [dm6]	AA	A	3.719e^-4	0.987	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15432896	2R_15432896_SNP [dm3] 2R_19545391_SNP [dm6]	A	G	3.732e^-4	0.987	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3907957	2L_3907957_SNP [dm3] 2L_3907957_SNP [dm6]	C	T	3.735e^-4	0.987	INTRON fred
X	13844553	X_13844553_DEL [dm3] X_13950520_DEL [dm6]	GC	G	3.737e^-4	0.987	INTRON mamo
2L	19587362	2L_19587362_SNP [dm3] 2L_19587362_SNP [dm6]	C	T	3.742e^-4	0.987	UTR_5_PRIME Lar DOWNSTREAM CG10366 INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	19072676	X_19072676_SNP [dm3] X_19178643_SNP [dm6]	G	T	3.750e^-4	0.987	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	8532774	3R_8532774_SNP [dm3] 3R_12707052_SNP [dm6]	A	G	3.756e^-4	0.987	SYNONYMOUS_CODING mus308	TF binding site mE1_TFBS_cad
X	7083170	X_7083170_SNP [dm3] X_7189137_SNP [dm6]	T	G	3.760e^-4	0.987	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	7337642	3R_7337642_DEL [dm3] 3R_11511920_DEL [dm6]	AA	A	3.766e^-4	0.987	INTERGENIC
3L	9522590	3L_9522590_SNP [dm3] 3L_9529490_SNP [dm6]	G	A	3.777e^-4	0.987	INTRON Or67a
2L	8369535	2L_8369535_INS [dm3] 2L_8369535_INS [dm6]	C	CC	3.777e^-4	0.987	UTR_3_PRIME Pp2A-29B UPSTREAM CG17292 DOWNSTREAM CR45341 INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	4218844	2L_4218844_SNP [dm3] 2L_4218844_SNP [dm6]	G	A	3.785e^-4	0.987	INTRON ft	TF binding site mE1_TFBS_HSA
2L	7753926	2L_7753926_DEL [dm3] 2L_7753926_DEL [dm6]	TT	T	3.788e^-4	0.987	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3R	19017519	3R_19017519_SNP [dm3] 3R_23191797_SNP [dm6]	C	T	3.789e^-4	0.987	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_z
2R	10567808	2R_10567808_SNP [dm3] 2R_14680303_SNP [dm6]	A	T	3.792e^-4	0.987	INTRON mspo
X	3714516	X_3714516_SNP [dm3] X_3820483_SNP [dm6]	G	T	3.799e^-4	0.987	DOWNSTREAM tRNA:CR32785 INTRON ec
X	15042417	X_15042417_SNP [dm3] X_15148384_SNP [dm6]	T	C	3.801e^-4	0.987	INTRON CG9095
3L	875259	3L_875259_SNP [dm3] 3L_875259_SNP [dm6]	A	G	3.803e^-4	0.987	INTRON CG32479	TF binding site mE1_TFBS_cad
3L	4366935	3L_4366935_SNP [dm3] 3L_4366935_SNP [dm6]	T	C	3.806e^-4	0.987	SYNONYMOUS_CODING CG11342 DOWNSTREAM DopEcR & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19558992	3R_19558992_SNP [dm3] 3R_23733270_SNP [dm6]	G	A	3.812e^-4	0.987	START_GAINED Rpn9 UTR_5_PRIME Rpn9 UPSTREAM Hmgcr & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3103554	3L_3103554_SNP [dm3] 3L_3103554_SNP [dm6]	A	T	3.815e^-4	0.987	INTRON Cht7
3R	20471805	3R_20471805_SNP [dm3] 3R_24646083_SNP [dm6]	G	C	3.817e^-4	0.987	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26113695	3R_26113695_SNP [dm3] 3R_30287973_SNP [dm6]	A	G	3.817e^-4	0.987	INTRON hdc
3L	4076820	3L_4076820_SNP [dm3] 3L_4076820_SNP [dm6]	G	A	3.827e^-4	0.987	SYNONYMOUS_CODING Gad1
3L	15018450	3L_15018450_SNP [dm3] 3L_15025350_SNP [dm6]	C	A	3.828e^-4	0.987	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	3103510	3L_3103510_MNP [dm3] 3L_3103510_MNP [dm6]	TCGCCGC	CAATAAT	3.830e^-4	0.987	INTRON Cht7
2L	18561942	2L_18561942_SNP [dm3] 2L_18561942_SNP [dm6]	A	G	3.830e^-4	0.987	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	7926377	3R_7926377_SNP [dm3] 3R_12100655_SNP [dm6]	T	A	3.835e^-4	0.987	INTRON dpr17
3L	1366208	3L_1366208_DEL [dm3] 3L_1366208_DEL [dm6]	GCG	G	3.842e^-4	0.987	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	18888878	X_18888878_SNP [dm3] X_18994845_SNP [dm6]	C	T	3.843e^-4	0.987	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2R	11733523	2R_11733523_SNP [dm3] 2R_15846018_SNP [dm6]	C	T	3.854e^-4	0.987	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8540884	3R_8540884_SNP [dm3] 3R_12715162_SNP [dm6]	T	G	3.861e^-4	0.987	INTRON Men	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10167464	3L_10167464_SNP [dm3] 3L_10174364_SNP [dm6]	A	G	3.869e^-4	0.987	INTRON dpr10
2L	11186177	2L_11186177_SNP [dm3] 2L_11186177_SNP [dm6]	T	C	3.873e^-4	0.987	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12422148	X_12422148_SNP [dm3] X_12528115_SNP [dm6]	C	T	3.876e^-4	0.987	INTRON CG43921
2R	10699036	2R_10699036_SNP [dm3] 2R_14811531_SNP [dm6]	C	T	3.877e^-4	0.987	INTERGENIC
3R	15379397	3R_15379397_SNP [dm3] 3R_19553675_SNP [dm6]	C	T	3.878e^-4	0.987	INTRON Dys
3L	7834182	3L_7834182_SNP [dm3] 3L_7841082_SNP [dm6]	G	A	3.882e^-4	0.987	INTRON Pdp1	regulatory region REDfly_CRMs
X	20405311	X_20405311_SNP [dm3] X_20534284_SNP [dm6]	G	T	3.884e^-4	0.987	INTERGENIC
3R	15378415	3R_15378415_SNP [dm3] 3R_19552693_SNP [dm6]	A	T	3.887e^-4	0.987	INTRON Dys
3R	13967568	3R_13967568_SNP [dm3] 3R_18141846_SNP [dm6]	G	A	3.888e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	6489031	2R_6489031_INS [dm3] 2R_10601526_INS [dm6]	T	GCA	3.890e^-4	0.987	INTRON psq	TF binding site BDTNP1_TFBS_dl
2L	13875383	2L_13875383_SNP [dm3] 2L_13875383_SNP [dm6]	T	G	3.903e^-4	0.987	INTRON CenG1A
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	3.906e^-4	0.987	INTRON rgn
3L	10076524	3L_10076524_SNP [dm3] 3L_10083424_SNP [dm6]	C	T	3.909e^-4	0.987	INTRON dpr6
2L	12596031	2L_12596031_SNP [dm3] 2L_12596031_SNP [dm6]	T	A	3.924e^-4	0.987	INTRON nub
2R	13384851	2R_13384851_SNP [dm3] 2R_17497346_SNP [dm6]	C	T	3.926e^-4	0.987	INTERGENIC
3L	4076778	3L_4076778_SNP [dm3] 3L_4076778_SNP [dm6]	T	C	3.931e^-4	0.987	INTRON Gad1
2R	10556671	2R_10556671_SNP [dm3] 2R_14669166_SNP [dm6]	T	C	3.947e^-4	0.987	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
2R	13515234	2R_13515234_SNP [dm3] 2R_17627729_SNP [dm6]	A	G	3.952e^-4	0.987	DOWNSTREAM rhi INTRON CG10936
3L	10722649	3L_10722649_SNP [dm3] 3L_10729549_SNP [dm6]	G	A	3.954e^-4	0.987	INTERGENIC
3R	10318514	3R_10318514_SNP [dm3] 3R_14492792_SNP [dm6]	T	C	3.967e^-4	0.987	INTERGENIC
X	21047467	X_21047467_SNP [dm3] X_21176440_SNP [dm6]	A	G	3.975e^-4	0.987	INTERGENIC
3L	1670052	3L_1670052_SNP [dm3] 3L_1670052_SNP [dm6]	T	C	3.976e^-4	0.987	SYNONYMOUS_CODING RabX5 DOWNSTREAM CG13930	TF binding site mE1_TFBS_chinmo
2L	2084287	2L_2084287_SNP [dm3] 2L_2084287_SNP [dm6]	C	G	3.981e^-4	0.987	INTRON dpr3 EXON CR44055	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6238689	2R_6238689_SNP [dm3] 2R_10351184_SNP [dm6]	G	T	3.991e^-4	0.987	DOWNSTREAM CG43172 & 1 other INTRON CG42732
2L	8534212	2L_8534212_SNP [dm3] 2L_8534212_SNP [dm6]	G	A	4.002e^-4	0.987	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3R	13117685	3R_13117685_SNP [dm3] 3R_17291963_SNP [dm6]	G	C	4.002e^-4	0.987	INTERGENIC
3L	9343330	3L_9343330_SNP [dm3] 3L_9350230_SNP [dm6]	C	A	4.003e^-4	0.987	DOWNSTREAM UGP INTRON PGRP-LF
2R	18481327	2R_18481327_SNP [dm3] 2R_22593822_SNP [dm6]	T	G	4.013e^-4	0.987	UPSTREAM dnr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20423914	X_20423914_SNP [dm3] X_20552887_SNP [dm6]	T	A	4.021e^-4	0.987	INTRON RunxB
3L	11188609	3L_11188609_SNP [dm3] 3L_11195509_SNP [dm6]	G	A	4.029e^-4	0.987	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2L	12026064	2L_12026064_SNP [dm3] 2L_12026064_SNP [dm6]	A	C	4.030e^-4	0.987	UPSTREAM CR44587 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5589176	X_5589176_SNP [dm3] X_5695143_SNP [dm6]	A	G	4.038e^-4	0.987	UTR_5_PRIME CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	9158808	2L_9158808_SNP [dm3] 2L_9158808_SNP [dm6]	A	G	4.041e^-4	0.987	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	7770317	2L_7770317_SNP [dm3] 2L_7770317_SNP [dm6]	T	C	4.055e^-4	0.987	INTRON CG7191
X	5580549	X_5580549_SNP [dm3] X_5686516_SNP [dm6]	T	C	4.065e^-4	0.987	NON_SYNONYMOUS_CODING CG3160
3L	5574299	3L_5574299_SNP [dm3] 3L_5581199_SNP [dm6]	T	A	4.074e^-4	0.987	INTERGENIC
3L	20926413	3L_20926413_SNP [dm3] 3L_20933313_SNP [dm6]	A	G	4.080e^-4	0.987	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21456557	3R_21456557_SNP [dm3] 3R_25630835_SNP [dm6]	A	G	4.081e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8386818	3L_8386818_INS [dm3] 3L_8393718_INS [dm6]	G	GG	4.090e^-4	0.987	UPSTREAM Jon66Cii INTERGENIC
X	909486	X_909486_SNP [dm3] X_1015453_SNP [dm6]	G	C	4.090e^-4	0.987	INTRON su_w[a]_ & 1 other
3L	2677844	3L_2677844_SNP [dm3] 3L_2677844_SNP [dm6]	T	C	4.107e^-4	0.987	INTRON Fife
3L	5244357	3L_5244357_SNP [dm3] 3L_5251257_SNP [dm6]	G	T	4.108e^-4	0.987	INTRON shep	TF binding site mE1_TFBS_inv
3R	18271219	3R_18271219_SNP [dm3] 3R_22445497_SNP [dm6]	A	C	4.115e^-4	0.987	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_sens
2R	17323108	2R_17323108_SNP [dm3] 2R_21435603_SNP [dm6]	T	C	4.116e^-4	0.987	INTRON Sdc
2R	20477448	2R_20477448_SNP [dm3] 2R_24589925_SNP [dm6]	C	T	4.122e^-4	0.987	INTRON pio
3R	22068393	3R_22068393_INS [dm3] 3R_26242671_INS [dm6]	A	AA	4.123e^-4	0.987	INTRON CR42745
2L	10082172	2L_10082172_SNP [dm3] 2L_10082172_SNP [dm6]	C	G	4.123e^-4	0.987	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7711910	3R_7711910_SNP [dm3] 3R_11886188_SNP [dm6]	T	G	4.126e^-4	0.987	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	7713220	3R_7713220_SNP [dm3] 3R_11887498_SNP [dm6]	C	T	4.126e^-4	0.987	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	3595956	2R_3595956_SNP [dm3] 2R_7708451_SNP [dm6]	G	A	4.126e^-4	0.987	INTRON tor
3L	11087403	3L_11087403_SNP [dm3] 3L_11094303_SNP [dm6]	G	T	4.127e^-4	0.987	NON_SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo
3L	2758562	3L_2758562_SNP [dm3] 3L_2758562_SNP [dm6]	G	A	4.130e^-4	0.987	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12910087	X_12910087_INS [dm3] X_13016054_INS [dm6]	C	CTATGCATTGC...	4.132e^-4	0.987	INTRON rad
2R	9693373	2R_9693373_SNP [dm3] 2R_13805868_SNP [dm6]	T	C	4.142e^-4	0.987	UTR_5_PRIME stj UPSTREAM stj DOWNSTREAM Cpr50Cb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10123392	3R_10123392_SNP [dm3] 3R_14297670_SNP [dm6]	C	A	4.151e^-4	0.987	UPSTREAM CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10070994	3L_10070994_SNP [dm3] 3L_10077894_SNP [dm6]	A	G	4.160e^-4	0.987	INTRON dpr6	TF binding site mE1_TFBS_cad
2L	19590145	2L_19590145_SNP [dm3] 2L_19590145_SNP [dm6]	G	A	4.160e^-4	0.987	INTRON Lar
3L	9522104	3L_9522104_SNP [dm3] 3L_9529004_SNP [dm6]	C	G	4.175e^-4	0.987	UPSTREAM Or67a INTERGENIC
X	12460532	X_12460532_SNP [dm3] X_12566499_SNP [dm6]	G	T	4.183e^-4	0.987	UTR_5_PRIME CG43921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12460691	X_12460691_SNP [dm3] X_12566658_SNP [dm6]	T	G	4.197e^-4	0.987	UTR_5_PRIME CG43921
3L	15018448	3L_15018448_SNP [dm3] 3L_15025348_SNP [dm6]	C	T	4.202e^-4	0.987	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	8373537	3L_8373537_SNP [dm3] 3L_8380437_SNP [dm6]	C	A	4.212e^-4	0.987	DOWNSTREAM ImpE1 INTRON ImpE1
2L	7852348	2L_7852348_SNP [dm3] 2L_7852348_SNP [dm6]	C	T	4.223e^-4	0.987	INTRON CG14535
3R	19017525	3R_19017525_SNP [dm3] 3R_23191803_SNP [dm6]	T	C	4.229e^-4	0.987	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_z
3L	9352655	3L_9352655_SNP [dm3] 3L_9359555_SNP [dm6]	A	G	4.236e^-4	0.987	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	13967569	3R_13967569_SNP [dm3] 3R_18141847_SNP [dm6]	A	G	4.241e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	3091151	2R_3091151_SNP [dm3] 2R_7203646_SNP [dm6]	C	T	4.246e^-4	0.987	INTRON pk
3L	5885851	3L_5885851_SNP [dm3] 3L_5892751_SNP [dm6]	T	C	4.255e^-4	0.987	INTERGENIC
2R	12214913	2R_12214913_DEL [dm3] 2R_16327408_DEL [dm6]	GT	G	4.256e^-4	0.987	INTRON Vha44
X	21940946	X_21940946_SNP [dm3] X_22539110_SNP [dm6]	T	A	4.256e^-4	0.987	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	13554332	2L_13554332_SNP [dm3] 2L_13554332_SNP [dm6]	T	G	4.260e^-4	0.987	INTRON kuz	TF binding site BDTNP1_TFBS_twi
2R	9537077	2R_9537077_SNP [dm3] 2R_13649572_SNP [dm6]	C	G	4.261e^-4	0.987	INTRON fas
3L	1838008	3L_1838008_SNP [dm3] 3L_1838008_SNP [dm6]	T	G	4.266e^-4	0.987	INTERGENIC
3L	1746111	3L_1746111_SNP [dm3] 3L_1746111_SNP [dm6]	A	C	4.266e^-4	0.987	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	6438029	2R_6438029_SNP [dm3] 2R_10550524_SNP [dm6]	A	G	4.269e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15042498	X_15042498_SNP [dm3] X_15148465_SNP [dm6]	T	A	4.270e^-4	0.987	INTRON CG9095
3L	9818156	3L_9818156_SNP [dm3] 3L_9825056_SNP [dm6]	C	A	4.275e^-4	0.987	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo
3R	12999077	3R_12999077_SNP [dm3] 3R_17173355_SNP [dm6]	T	A	4.277e^-4	0.987	INTRON Mur89F
2R	11262160	2R_11262160_SNP [dm3] 2R_15374655_SNP [dm6]	A	G	4.284e^-4	0.987	UPSTREAM CR43276 DOWNSTREAM CR43105 INTRON CR43275	TF binding site BDTNP1_TFBS_hb
3R	7712645	3R_7712645_SNP [dm3] 3R_11886923_SNP [dm6]	C	G	4.292e^-4	0.987	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25211868	3R_25211868_SNP [dm3] 3R_29386146_SNP [dm6]	G	A	4.294e^-4	0.987	INTRON Ptp99A
3L	9343332	3L_9343332_SNP [dm3] 3L_9350232_SNP [dm6]	C	A	4.296e^-4	0.987	DOWNSTREAM UGP INTRON PGRP-LF
3R	27466914	3R_27466914_SNP [dm3] 3R_31641192_SNP [dm6]	T	C	4.300e^-4	0.987	INTRON kek6
3L	9218995	3L_9218995_SNP [dm3] 3L_9225895_SNP [dm6]	T	A	4.305e^-4	0.987	INTERGENIC
3L	10165441	3L_10165441_SNP [dm3] 3L_10172341_SNP [dm6]	G	A	4.306e^-4	0.987	INTRON dpr10
X	3157578	X_3157578_SNP [dm3] X_3263545_SNP [dm6]	C	T	4.312e^-4	0.987	INTRON dnc
2L	14116037	2L_14116037_DEL [dm3] 2L_14116037_DEL [dm6]	AAAGAA	A	4.314e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3363055	2R_3363055_SNP [dm3] 2R_7475550_SNP [dm6]	A	G	4.314e^-4	0.987	UTR_5_PRIME Aldh-III UPSTREAM Aldh-III
2R	13419336	2R_13419336_SNP [dm3] 2R_17531831_SNP [dm6]	T	A	4.316e^-4	0.987	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18705999	3R_18705999_SNP [dm3] 3R_22880277_SNP [dm6]	G	A	4.317e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13804032	3R_13804032_SNP [dm3] 3R_17978310_SNP [dm6]	T	A	4.318e^-4	0.987	INTRON cpo
3R	19071223	3R_19071223_SNP [dm3] 3R_23245501_SNP [dm6]	G	T	4.326e^-4	0.987	UTR_5_PRIME CG4467
3R	7711822	3R_7711822_SNP [dm3] 3R_11886100_SNP [dm6]	C	G	4.331e^-4	0.987	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	26118566	3R_26118566_SNP [dm3] 3R_30292844_SNP [dm6]	C	G	4.337e^-4	0.987	INTRON hdc
X	5582466	X_5582466_SNP [dm3] X_5688433_SNP [dm6]	A	G	4.337e^-4	0.987	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19704492	3R_19704492_SNP [dm3] 3R_23878770_SNP [dm6]	G	A	4.339e^-4	0.987	INTRON Pli
2L	5813833	2L_5813833_SNP [dm3] 2L_5813833_SNP [dm6]	T	C	4.350e^-4	0.987	INTERGENIC
3L	1644286	3L_1644286_SNP [dm3] 3L_1644286_SNP [dm6]	G	C	4.360e^-4	0.987	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20507763	3R_20507763_SNP [dm3] 3R_24682041_SNP [dm6]	T	G	4.362e^-4	0.987	INTRON slo
3L	8424581	3L_8424581_SNP [dm3] 3L_8431481_SNP [dm6]	T	C	4.363e^-4	0.987	UTR_3_PRIME Cbl DOWNSTREAM Unr
2R	1395822	2R_1395822_SNP [dm3] 2R_5508317_SNP [dm6]	T	A	4.367e^-4	0.987	UPSTREAM TpnC4 INTRON CG30438
2R	12691998	2R_12691998_SNP [dm3] 2R_16804493_SNP [dm6]	A	G	4.368e^-4	0.987	INTERGENIC
2R	12692003	2R_12692003_SNP [dm3] 2R_16804498_SNP [dm6]	A	T	4.368e^-4	0.987	INTERGENIC
2L	6330099	2L_6330099_SNP [dm3] 2L_6330099_SNP [dm6]	T	C	4.370e^-4	0.987	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
2L	7753922	2L_7753922_SNP [dm3] 2L_7753922_SNP [dm6]	C	T	4.376e^-4	0.987	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	10019441	X_10019441_SNP [dm3] X_10125408_SNP [dm6]	A	T	4.383e^-4	0.987	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
X	20853551	X_20853551_SNP [dm3] X_20982524_SNP [dm6]	G	C	4.384e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3138280	2R_3138280_DEL [dm3] 2R_7250775_DEL [dm6]	TCTTTGCATAACTGCCGGGG...	T	4.396e^-4	0.987	DOWNSTREAM Gadd45 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4079415	3L_4079415_SNP [dm3] 3L_4079415_SNP [dm6]	C	G	4.400e^-4	0.987	SYNONYMOUS_CODING Gad1
3R	7894720	3R_7894720_SNP [dm3] 3R_12068998_SNP [dm6]	T	A	4.401e^-4	0.987	UTR_3_PRIME CG14741
3L	10164130	3L_10164130_SNP [dm3] 3L_10171030_SNP [dm6]	G	T	4.402e^-4	0.987	INTRON dpr10
3R	18835162	3R_18835162_SNP [dm3] 3R_23009440_SNP [dm6]	C	A	4.413e^-4	0.987	INTRON CG34375
X	18890885	X_18890885_SNP [dm3] X_18996852_SNP [dm6]	C	A	4.418e^-4	0.987	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12556687	3L_12556687_SNP [dm3] 3L_12563587_SNP [dm6]	T	C	4.419e^-4	0.987	INTRON sowah
3L	4741234	3L_4741234_SNP [dm3] 3L_4741234_SNP [dm6]	C	G	4.421e^-4	0.987	INTRON RhoGEF64C
3R	7713210	3R_7713210_DEL [dm3] 3R_11887488_DEL [dm6]	TC	T	4.433e^-4	0.987	UPSTREAM mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	3094921	2R_3094921_SNP [dm3] 2R_7207416_SNP [dm6]	C	G	4.433e^-4	0.987	INTRON pk	TF binding site mE1_TFBS_chinmo
3L	1746734	3L_1746734_SNP [dm3] 3L_1746734_SNP [dm6]	T	G	4.441e^-4	0.987	UPSTREAM CG13921 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	11094196	2R_11094196_SNP [dm3] 2R_15206691_SNP [dm6]	C	T	4.470e^-4	0.987	UTR_3_PRIME row DOWNSTREAM Ir51a
3R	26116319	3R_26116319_SNP [dm3] 3R_30290597_SNP [dm6]	T	G	4.470e^-4	0.987	INTRON hdc
3L	8105983	3L_8105983_SNP [dm3] 3L_8112883_SNP [dm6]	C	T	4.482e^-4	0.987	UTR_3_PRIME CG7927 DOWNSTREAM Arp3 INTRON CG7927
2L	1244487	2L_1244487_SNP [dm3] 2L_1244487_SNP [dm6]	A	C	4.484e^-4	0.987	INTERGENIC
2R	2777749	2R_2777749_SNP [dm3] 2R_6890244_SNP [dm6]	A	G	4.485e^-4	0.987	INTERGENIC
3R	9998897	3R_9998897_SNP [dm3] 3R_14173175_SNP [dm6]	C	T	4.488e^-4	0.987	UTR_3_PRIME Dop1R1
3L	15244584	3L_15244584_SNP [dm3] 3L_15251484_SNP [dm6]	G	T	4.501e^-4	0.987	INTERGENIC
2L	13355515	2L_13355515_SNP [dm3] 2L_13355515_SNP [dm6]	T	C	4.509e^-4	0.987	UPSTREAM CG9395 INTERGENIC
2R	10699213	2R_10699213_SNP [dm3] 2R_14811708_SNP [dm6]	G	C	4.520e^-4	0.987	INTERGENIC
3L	1793166	3L_1793166_SNP [dm3] 3L_1793166_SNP [dm6]	G	T	4.529e^-4	0.987	NON_SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9227222	3L_9227222_DEL [dm3] 3L_9234122_DEL [dm6]	ACAAATCCCGGACA...	A	4.530e^-4	0.987	INTERGENIC
2R	18393254	2R_18393254_SNP [dm3] 2R_22505749_SNP [dm6]	G	A	4.534e^-4	0.987	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7022484	2R_7022484_SNP [dm3] 2R_11134979_SNP [dm6]	G	A	4.540e^-4	0.987	UPSTREAM BBS4 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	5380695	X_5380695_SNP [dm3] X_5486662_SNP [dm6]	A	G	4.546e^-4	0.987	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8393875	3L_8393875_SNP [dm3] 3L_8400775_SNP [dm6]	C	T	4.563e^-4	0.987	SYNONYMOUS_CODING CG7120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9881211	3R_9881211_SNP [dm3] 3R_14055489_SNP [dm6]	A	C	4.569e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12691997	2R_12691997_SNP [dm3] 2R_16804492_SNP [dm6]	A	T	4.571e^-4	0.987	INTERGENIC
2R	12309942	2R_12309942_SNP [dm3] 2R_16422437_SNP [dm6]	C	T	4.592e^-4	0.987	INTRON Sema-2b
X	4938645	X_4938645_SNP [dm3] X_5044612_SNP [dm6]	G	A	4.606e^-4	0.987	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13896591	3R_13896591_SNP [dm3] 3R_18070869_SNP [dm6]	C	T	4.607e^-4	0.987	INTERGENIC
3L	3904918	3L_3904918_SNP [dm3] 3L_3904918_SNP [dm6]	C	T	4.609e^-4	0.987	UTR_3_PRIME Sc2 UPSTREAM ida	TF binding site mE1_TFBS_sens
3R	22314695	3R_22314695_DEL [dm3] 3R_26488973_DEL [dm6]	TT	T	4.611e^-4	0.987	INTRON plum
3R	21298022	3R_21298022_SNP [dm3] 3R_25472300_SNP [dm6]	A	G	4.620e^-4	0.987	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19588908	2L_19588908_SNP [dm3] 2L_19588908_SNP [dm6]	C	T	4.625e^-4	0.987	INTRON Lar
3R	19558465	3R_19558465_SNP [dm3] 3R_23732743_SNP [dm6]	G	A	4.627e^-4	0.987	SPLICE_SITE_REGION Rpn9 UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12730678	2L_12730678_SNP [dm3] 2L_12730678_SNP [dm6]	A	C	4.628e^-4	0.987	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16594375	2R_16594375_SNP [dm3] 2R_20706870_SNP [dm6]	G	A	4.631e^-4	0.987	INTRON dpr	TF binding site mE1_TFBS_chinmo
X	20968150	X_20968150_SNP [dm3] X_21097123_SNP [dm6]	G	T	4.635e^-4	0.987	INTRON stg1 & 2 others	transposable element FlyBase
3L	15018200	3L_15018200_SNP [dm3] 3L_15025100_SNP [dm6]	G	A	4.647e^-4	0.987	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	18289952	2R_18289952_SNP [dm3] 2R_22402447_SNP [dm6]	T	C	4.659e^-4	0.987	UPSTREAM babos DOWNSTREAM CR44760 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18976073	2R_18976073_SNP [dm3] 2R_23088550_SNP [dm6]	A	T	4.664e^-4	0.987	DOWNSTREAM CG13538 INTERGENIC
3L	1321740	3L_1321740_SNP [dm3] 3L_1321740_SNP [dm6]	G	A	4.669e^-4	0.987	DOWNSTREAM CG9184 INTRON Myo61F
X	20943354	X_20943354_SNP [dm3] X_21072327_SNP [dm6]	C	T	4.674e^-4	0.987	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13574568	2R_13574568_SNP [dm3] 2R_17687063_SNP [dm6]	C	T	4.674e^-4	0.987	DOWNSTREAM CG42562 INTRON HPS4
X	4938638	X_4938638_SNP [dm3] X_5044605_SNP [dm6]	A	T	4.677e^-4	0.987	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4938665	X_4938665_SNP [dm3] X_5044632_SNP [dm6]	C	T	4.677e^-4	0.987	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	3141907	2R_3141907_SNP [dm3] 2R_7254402_SNP [dm6]	T	A	4.685e^-4	0.987	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5101799	3R_5101799_SNP [dm3] 3R_9276077_SNP [dm6]	T	A	4.686e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9694641	2R_9694641_SNP [dm3] 2R_13807136_SNP [dm6]	G	A	4.695e^-4	0.987	INTRON stj	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5582934	X_5582934_SNP [dm3] X_5688901_SNP [dm6]	C	T	4.704e^-4	0.987	SYNONYMOUS_CODING CG3160 DOWNSTREAM CR45525	TF binding site mE1_TFBS_sens
3R	20426989	3R_20426989_DEL [dm3] 3R_24601267_DEL [dm6]	GG	G	4.704e^-4	0.987	INTRON mld	TF binding site mE1_TFBS_HSA
2L	12009986	2L_12009986_INS [dm3] 2L_12009986_INS [dm6]	C	CGC	4.708e^-4	0.987	DOWNSTREAM Rh5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	21508704	X_21508704_SNP [dm3] X_21637677_SNP [dm6]	G	C	4.710e^-4	0.987	INTERGENIC	transposable element FlyBase
3R	13804033	3R_13804033_SNP [dm3] 3R_17978311_SNP [dm6]	G	A	4.712e^-4	0.987	INTRON cpo
3L	4341597	3L_4341597_SNP [dm3] 3L_4341597_SNP [dm6]	T	A	4.712e^-4	0.987	INTRON Cip4
3L	7533044	3L_7533044_SNP [dm3] 3L_7539944_SNP [dm6]	C	A	4.724e^-4	0.987	UTR_3_PRIME lqf UPSTREAM CG16998 DOWNSTREAM CG32374
X	21508612	X_21508612_SNP [dm3] X_21637585_SNP [dm6]	T	C	4.728e^-4	0.987	INTERGENIC	transposable element FlyBase
3L	11192359	3L_11192359_SNP [dm3] 3L_11199259_SNP [dm6]	C	T	4.732e^-4	0.987	SPLICE_SITE_REGION Plod UPSTREAM CG7607 INTRON Plod	TF binding site mE1_TFBS_sens
2R	14182522	2R_14182522_SNP [dm3] 2R_18295017_SNP [dm6]	C	A	4.738e^-4	0.987	UPSTREAM CG18537 DOWNSTREAM CG14502 INTRON sbb & 1 other
3L	10977672	3L_10977672_SNP [dm3] 3L_10984572_SNP [dm6]	C	T	4.755e^-4	0.987	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16113454	2L_16113454_SNP [dm3] 2L_16113454_SNP [dm6]	T	G	4.757e^-4	0.987	INTERGENIC
3L	8581926	3L_8581926_INS [dm3] 3L_8588826_INS [dm6]	G	GGAGGAGG	4.764e^-4	0.987	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	7471244	3L_7471244_SNP [dm3] 3L_7478144_SNP [dm6]	G	A	4.772e^-4	0.987	INTERGENIC
3R	8542759	3R_8542759_SNP [dm3] 3R_12717037_SNP [dm6]	C	T	4.775e^-4	0.987	INTRON Men
2R	6438417	2R_6438417_SNP [dm3] 2R_10550912_SNP [dm6]	A	C	4.777e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13554375	2L_13554375_SNP [dm3] 2L_13554375_SNP [dm6]	T	A	4.780e^-4	0.987	INTRON kuz	TF binding site BDTNP1_TFBS_twi
2R	6489026	2R_6489026_SNP [dm3] 2R_10601521_SNP [dm6]	G	T	4.788e^-4	0.987	INTRON psq	TF binding site BDTNP1_TFBS_dl
2L	3876499	2L_3876499_SNP [dm3] 2L_3876499_SNP [dm6]	T	C	4.798e^-4	0.987	INTRON capu
2R	19325291	2R_19325291_SNP [dm3] 2R_23437768_SNP [dm6]	T	A	4.805e^-4	0.987	INTERGENIC
2L	7091189	2L_7091189_SNP [dm3] 2L_7091189_SNP [dm6]	C	T	4.808e^-4	0.987	INTERGENIC
3R	18594709	3R_18594709_SNP [dm3] 3R_22768987_SNP [dm6]	A	G	4.812e^-4	0.987	NON_SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2R	3146411	2R_3146411_SNP [dm3] 2R_7258906_SNP [dm6]	G	A	4.812e^-4	0.987	UTR_3_PRIME CG1850	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8548244	3R_8548244_SNP [dm3] 3R_12722522_SNP [dm6]	G	C	4.814e^-4	0.987	UPSTREAM Men INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12452009	2R_12452009_SNP [dm3] 2R_16564504_SNP [dm6]	G	T	4.817e^-4	0.987	INTRON DAT
3L	10070987	3L_10070987_SNP [dm3] 3L_10077887_SNP [dm6]	A	T	4.821e^-4	0.987	INTRON dpr6
2R	17450636	2R_17450636_INS [dm3] 2R_21563131_INS [dm6]	G	GACCAAAAGA	4.821e^-4	0.987	INTRON CG10440
2R	17450650	2R_17450650_SNP [dm3] 2R_21563145_SNP [dm6]	G	C	4.821e^-4	0.987	INTRON CG10440
3L	2678792	3L_2678792_SNP [dm3] 3L_2678792_SNP [dm6]	A	G	4.825e^-4	0.987	INTRON Fife	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18594715	3R_18594715_SNP [dm3] 3R_22768993_SNP [dm6]	A	C	4.828e^-4	0.987	NON_SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
3R	19559300	3R_19559300_SNP [dm3] 3R_23733578_SNP [dm6]	T	A	4.828e^-4	0.987	UTR_5_PRIME Hmgcr UPSTREAM Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	19453276	2L_19453276_SNP [dm3] 2L_19453276_SNP [dm6]	G	A	4.831e^-4	0.987	UTR_5_PRIME Top2 UPSTREAM CG10026	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3R	18181826	3R_18181826_SNP [dm3] 3R_22356104_SNP [dm6]	G	A	4.833e^-4	0.987	SYNONYMOUS_CODING rdhB UPSTREAM Sar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12134693	2R_12134693_SNP [dm3] 2R_16247188_SNP [dm6]	T	A	4.837e^-4	0.987	INTRON CngA
X	20943534	X_20943534_SNP [dm3] X_21072507_SNP [dm6]	T	C	4.838e^-4	0.987	INTRON bves	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4789488	2L_4789488_INS [dm3] 2L_4789488_INS [dm6]	T	TT	4.838e^-4	0.987	INTRON CG15630
3L	19352444	3L_19352444_SNP [dm3] 3L_19359344_SNP [dm6]	A	G	4.839e^-4	0.987	INTRON CG32206
3R	15359324	3R_15359324_SNP [dm3] 3R_19533602_SNP [dm6]	A	G	4.841e^-4	0.987	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7626768	2R_7626768_SNP [dm3] 2R_11739263_SNP [dm6]	T	G	4.843e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1053266	2L_1053266_SNP [dm3] 2L_1053266_SNP [dm6]	T	G	4.845e^-4	0.987	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5370456	3L_5370456_SNP [dm3] 3L_5377356_SNP [dm6]	G	A	4.849e^-4	0.987	UPSTREAM CR45743 INTERGENIC
2L	18807153	2L_18807153_SNP [dm3] 2L_18807153_SNP [dm6]	C	G	4.853e^-4	0.987	UPSTREAM CR43817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10134750	2L_10134750_SNP [dm3] 2L_10134750_SNP [dm6]	A	G	4.857e^-4	0.987	INTRON CG44153
2R	10699249	2R_10699249_SNP [dm3] 2R_14811744_SNP [dm6]	C	T	4.859e^-4	0.987	INTERGENIC	regulatory region REDfly_CRMs
2R	10699254	2R_10699254_SNP [dm3] 2R_14811749_SNP [dm6]	G	C	4.859e^-4	0.987	INTERGENIC	regulatory region REDfly_CRMs
3R	13250102	3R_13250102_SNP [dm3] 3R_17424380_SNP [dm6]	C	T	4.886e^-4	0.987	INTERGENIC
X	21170330	X_21170330_SNP [dm3] X_21299303_SNP [dm6]	A	G	4.893e^-4	0.987	UPSTREAM mir-2535b INTRON CG1718
3L	15274576	3L_15274576_INS [dm3] 3L_15281476_INS [dm6]	A	AA	4.893e^-4	0.987	INTERGENIC
3L	15274578	3L_15274578_SNP [dm3] 3L_15281478_SNP [dm6]	A	C	4.893e^-4	0.987	INTERGENIC
2R	11262396	2R_11262396_SNP [dm3] 2R_15374891_SNP [dm6]	T	C	4.894e^-4	0.987	UPSTREAM CR43275 DOWNSTREAM CR43186 EXON CR43105	TF binding site BDTNP1_TFBS_hb
2R	4460569	2R_4460569_SNP [dm3] 2R_8573064_SNP [dm6]	C	T	4.900e^-4	0.987	DOWNSTREAM Cyp6a13 & 1 other INTERGENIC
3L	1810227	3L_1810227_SNP [dm3] 3L_1810227_SNP [dm6]	A	G	4.900e^-4	0.987	UPSTREAM GV1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	4.902e^-4	0.987	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3L	14584645	3L_14584645_SNP [dm3] 3L_14591545_SNP [dm6]	T	A	4.904e^-4	0.987	INTRON HGTX	TF binding site BDTNP1_TFBS_da
3R	15362959	3R_15362959_SNP [dm3] 3R_19537237_SNP [dm6]	T	C	4.916e^-4	0.987	INTRON Dys
2R	3682546	2R_3682546_SNP [dm3] 2R_7795041_SNP [dm6]	G	A	4.922e^-4	0.987	SYNONYMOUS_CODING mus205	TF binding site mE1_TFBS_sens
3L	5370585	3L_5370585_DEL [dm3] 3L_5377485_DEL [dm6]	TT	A	4.923e^-4	0.987	UPSTREAM CR45743 INTERGENIC
3L	875096	3L_875096_SNP [dm3] 3L_875096_SNP [dm6]	C	T	4.938e^-4	0.987	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad
2R	14085492	2R_14085492_SNP [dm3] 2R_18197987_SNP [dm6]	T	G	4.940e^-4	0.987	INTERGENIC
2R	12604636	2R_12604636_SNP [dm3] 2R_16717131_SNP [dm6]	G	A	4.960e^-4	0.987	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5101797	3R_5101797_SNP [dm3] 3R_9276075_SNP [dm6]	T	G	4.967e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6917441	3L_6917441_SNP [dm3] 3L_6924341_SNP [dm6]	A	G	4.971e^-4	0.987	INTERGENIC
3L	5140445	3L_5140445_SNP [dm3] 3L_5147345_SNP [dm6]	C	T	4.972e^-4	0.987	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	5430901	3L_5430901_SNP [dm3] 3L_5437801_SNP [dm6]	T	G	4.972e^-4	0.987	INTRON CG34391
2R	19224346	2R_19224346_SNP [dm3] 2R_23336823_SNP [dm6]	A	G	4.973e^-4	0.987	INTERGENIC
2R	17526249	2R_17526249_SNP [dm3] 2R_21638744_SNP [dm6]	C	T	4.975e^-4	0.987	DOWNSTREAM CG10321 INTERGENIC
2L	5749057	2L_5749057_SNP [dm3] 2L_5749057_SNP [dm6]	C	T	4.976e^-4	0.987	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
3L	18843113	3L_18843113_INS [dm3] 3L_18850013_INS [dm6]	G	GGAGGAGT	4.978e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	17605823	2L_17605823_SNP [dm3] 2L_17605823_SNP [dm6]	C	A	4.981e^-4	0.987	DOWNSTREAM CR44412 INTERGENIC
2R	2744250	2R_2744250_DEL [dm3] 2R_6856745_DEL [dm6]	GT	G	4.981e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5370471	3L_5370471_SNP [dm3] 3L_5377371_SNP [dm6]	T	A	4.993e^-4	0.987	UPSTREAM CR45743 INTERGENIC
3R	13000203	3R_13000203_SNP [dm3] 3R_17174481_SNP [dm6]	A	C	4.999e^-4	0.987	INTRON Mur89F
3L	3399671	3L_3399671_SNP [dm3] 3L_3399671_SNP [dm6]	C	T	5.002e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16520582	2L_16520582_INS [dm3] 2L_16520582_INS [dm6]	A	AAGA	5.011e^-4	0.987	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	6106874	3L_6106874_SNP [dm3] 3L_6113774_SNP [dm6]	A	T	5.014e^-4	0.987	INTRON Ets65A
2R	6820711	2R_6820711_SNP [dm3] 2R_10933206_SNP [dm6]	T	C	5.014e^-4	0.987	INTERGENIC
3L	5127265	3L_5127265_SNP [dm3] 3L_5134165_SNP [dm6]	A	G	5.016e^-4	0.987	UPSTREAM CG4603 & 1 other INTRON CG4603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5242739	3R_5242739_SNP [dm3] 3R_9417017_SNP [dm6]	T	G	5.025e^-4	0.987	UTR_3_PRIME alpha-Man-II UPSTREAM ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15864082	2R_15864082_SNP [dm3] 2R_19976577_SNP [dm6]	A	G	5.036e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18843110	3L_18843110_SNP [dm3] 3L_18850010_SNP [dm6]	A	G	5.037e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	7106793	3L_7106793_DEL [dm3] 3L_7113693_DEL [dm6]	CT	C	5.054e^-4	0.987	INTRON form3
2R	10306376	2R_10306376_SNP [dm3] 2R_14418871_SNP [dm6]	A	T	5.054e^-4	0.987	INTERGENIC
3L	7559205	3L_7559205_SNP [dm3] 3L_7566105_SNP [dm6]	T	C	5.056e^-4	0.987	SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	12813197	2L_12813197_SNP [dm3] 2L_12813197_SNP [dm6]	C	A	5.060e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12813200	2L_12813200_INS [dm3] 2L_12813200_INS [dm6]	A	AT	5.060e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1810213	3L_1810213_SNP [dm3] 3L_1810213_SNP [dm6]	C	A	5.067e^-4	0.987	UPSTREAM GV1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8001244	2R_8001244_SNP [dm3] 2R_12113739_SNP [dm6]	T	C	5.069e^-4	0.987	INTRON jeb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19644444	3L_19644444_SNP [dm3] 3L_19651344_SNP [dm6]	G	T	5.075e^-4	0.987	INTRON tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7753641	2L_7753641_SNP [dm3] 2L_7753641_SNP [dm6]	T	A	5.078e^-4	0.987	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2R	12169689	2R_12169689_SNP [dm3] 2R_16282184_SNP [dm6]	T	G	5.080e^-4	0.987	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19594120	2L_19594120_SNP [dm3] 2L_19594120_SNP [dm6]	C	A	5.091e^-4	0.987	INTRON Lar
3L	6855201	3L_6855201_DEL [dm3] 3L_6862101_DEL [dm6]	CT	C	5.094e^-4	0.987	INTERGENIC
3L	12562441	3L_12562441_SNP [dm3] 3L_12569341_SNP [dm6]	A	T	5.102e^-4	0.987	INTRON sowah	TF binding site mE1_TFBS_cnc
3R	18888098	3R_18888098_SNP [dm3] 3R_23062376_SNP [dm6]	A	T	5.103e^-4	0.987	SYNONYMOUS_CODING Ublcp1 DOWNSTREAM CG17111	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2868167	3L_2868167_SNP [dm3] 3L_2868167_SNP [dm6]	T	C	5.105e^-4	0.987	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	21845318	3R_21845318_SNP [dm3] 3R_26019596_SNP [dm6]	A	G	5.109e^-4	0.987	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
3R	11337060	3R_11337060_SNP [dm3] 3R_15511338_SNP [dm6]	C	T	5.118e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1701887	2L_1701887_SNP [dm3] 2L_1701887_SNP [dm6]	C	T	5.122e^-4	0.987	UTR_3_PRIME chinmo
3L	10420784	3L_10420784_SNP [dm3] 3L_10427684_SNP [dm6]	A	G	5.122e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6855215	3L_6855215_SNP [dm3] 3L_6862115_SNP [dm6]	A	G	5.129e^-4	0.987	INTERGENIC
3R	15377837	3R_15377837_SNP [dm3] 3R_19552115_SNP [dm6]	C	T	5.129e^-4	0.987	INTRON Dys
2R	7651608	2R_7651608_SNP [dm3] 2R_11764103_SNP [dm6]	G	A	5.138e^-4	0.987	INTRON ths
2L	8024144	2L_8024144_SNP [dm3] 2L_8024144_SNP [dm6]	T	C	5.154e^-4	0.987	INTRON Tg	regulatory region REDfly_CRMs
3L	21376784	3L_21376784_SNP [dm3] 3L_21383684_SNP [dm6]	T	A	5.160e^-4	0.987	INTRON rgn
3R	26106468	3R_26106468_SNP [dm3] 3R_30280746_SNP [dm6]	G	A	5.163e^-4	0.987	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20496288	3R_20496288_SNP [dm3] 3R_24670566_SNP [dm6]	C	T	5.177e^-4	0.987	INTRON slo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4412479	X_4412479_DEL [dm3] X_4518446_DEL [dm6]	TT	T	5.178e^-4	0.987	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26110943	3R_26110943_SNP [dm3] 3R_30285221_SNP [dm6]	T	C	5.183e^-4	0.987	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16567984	2R_16567984_DEL [dm3] 2R_20680479_DEL [dm6]	TGCATGTT	T	5.184e^-4	0.987	INTERGENIC
2R	17344488	2R_17344488_DEL [dm3] 2R_21456983_DEL [dm6]	CCTTCACTTCGC...	C	5.197e^-4	0.987	INTRON Sdc
2R	14560544	2R_14560544_SNP [dm3] 2R_18673039_SNP [dm6]	A	T	5.198e^-4	0.987	UTR_5_PRIME edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16077508	X_16077508_SNP [dm3] X_16183475_SNP [dm6]	T	A	5.198e^-4	0.987	INTERGENIC
3L	5370529	3L_5370529_SNP [dm3] 3L_5377429_SNP [dm6]	T	A	5.207e^-4	0.987	UPSTREAM CR45743 INTERGENIC
2R	14556124	2R_14556124_SNP [dm3] 2R_18668619_SNP [dm6]	T	A	5.207e^-4	0.987	INTRON edl
X	3237726	X_3237726_DEL [dm3] X_3343693_DEL [dm6]	AA	A	5.210e^-4	0.987	UTR_3_PRIME dnc INTRON CR44886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	21184678	X_21184678_SNP [dm3] X_21313651_SNP [dm6]	C	A	5.212e^-4	0.987	SYNONYMOUS_CODING CG1801
X	15042514	X_15042514_SNP [dm3] X_15148481_SNP [dm6]	T	A	5.223e^-4	0.987	INTRON CG9095
3L	20964980	3L_20964980_SNP [dm3] 3L_20971880_SNP [dm6]	T	C	5.228e^-4	0.987	NON_SYNONYMOUS_CODING CG33286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13554377	2L_13554377_SNP [dm3] 2L_13554377_SNP [dm6]	C	A	5.245e^-4	0.987	INTRON kuz	TF binding site BDTNP1_TFBS_twi
2R	18939591	2R_18939591_SNP [dm3] 2R_23052068_SNP [dm6]	C	T	5.245e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11440759	2L_11440759_INS [dm3] 2L_11440759_INS [dm6]	G	GTTGCCA	5.250e^-4	0.987	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7991414	2R_7991414_SNP [dm3] 2R_12103909_SNP [dm6]	A	G	5.253e^-4	0.987	INTRON jeb
2R	3130158	2R_3130158_SNP [dm3] 2R_7242653_SNP [dm6]	G	T	5.255e^-4	0.987	DOWNSTREAM Ady43A INTERGENIC
2R	6558763	2R_6558763_SNP [dm3] 2R_10671258_SNP [dm6]	T	C	5.260e^-4	0.987	INTERGENIC
3L	5947471	3L_5947471_SNP [dm3] 3L_5954371_SNP [dm6]	C	T	5.260e^-4	0.987	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9442687	2R_9442687_SNP [dm3] 2R_13555182_SNP [dm6]	G	A	5.263e^-4	0.987	SYNONYMOUS_CODING Roe1 UPSTREAM link	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	7132256	2R_7132256_SNP [dm3] 2R_11244751_SNP [dm6]	C	T	5.264e^-4	0.987	SYNONYMOUS_CODING CG13226 UPSTREAM CG34225	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21940924	X_21940924_SNP [dm3] X_22539088_SNP [dm6]	T	G	5.272e^-4	0.987	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2050106	2L_2050106_SNP [dm3] 2L_2050106_SNP [dm6]	G	A	5.278e^-4	0.987	INTERGENIC
2L	13554378	2L_13554378_SNP [dm3] 2L_13554378_SNP [dm6]	C	T	5.282e^-4	0.987	INTRON kuz	TF binding site BDTNP1_TFBS_twi
3L	15211041	3L_15211041_SNP [dm3] 3L_15217941_SNP [dm6]	A	G	5.284e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16410843	3R_16410843_SNP [dm3] 3R_20585121_SNP [dm6]	G	A	5.286e^-4	0.987	INTRON CG16953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4736544	3L_4736544_SNP [dm3] 3L_4736544_SNP [dm6]	C	A	5.293e^-4	0.987	INTRON RhoGEF64C
3L	6855375	3L_6855375_SNP [dm3] 3L_6862275_SNP [dm6]	G	T	5.301e^-4	0.987	INTERGENIC
3L	7239889	3L_7239889_SNP [dm3] 3L_7246789_SNP [dm6]	G	T	5.305e^-4	0.987	SYNONYMOUS_CODING Cdc27	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19559269	3R_19559269_SNP [dm3] 3R_23733547_SNP [dm6]	T	A	5.322e^-4	0.987	UTR_5_PRIME Hmgcr UPSTREAM Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	12310020	2R_12310020_SNP [dm3] 2R_16422515_SNP [dm6]	C	T	5.323e^-4	0.987	INTRON Sema-2b
2L	3657507	2L_3657507_SNP [dm3] 2L_3657507_SNP [dm6]	T	A	5.325e^-4	0.987	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8778647	2R_8778647_SNP [dm3] 2R_12891142_SNP [dm6]	T	C	5.325e^-4	0.987	INTRON vg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12389699	2L_12389699_SNP [dm3] 2L_12389699_SNP [dm6]	T	G	5.345e^-4	0.987	INTRON bru-2
3L	14205717	3L_14205717_SNP [dm3] 3L_14212617_SNP [dm6]	T	A	5.352e^-4	0.987	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	13475322	3R_13475322_SNP [dm3] 3R_17649600_SNP [dm6]	C	A	5.357e^-4	0.987	INTRON CG14322
2L	1316454	2L_1316454_SNP [dm3] 2L_1316454_SNP [dm6]	A	T	5.358e^-4	0.987	INTERGENIC
3L	8385389	3L_8385389_SNP [dm3] 3L_8392289_SNP [dm6]	G	A	5.360e^-4	0.987	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10822964	3L_10822964_INS [dm3] 3L_10829864_INS [dm6]	G	GTGGGCT	5.370e^-4	0.987	INTERGENIC
2L	10020514	2L_10020514_SNP [dm3] 2L_10020514_SNP [dm6]	G	C	5.371e^-4	0.987	INTERGENIC
2R	15863741	2R_15863741_SNP [dm3] 2R_19976236_SNP [dm6]	C	A	5.374e^-4	0.987	INTERGENIC
2L	8636544	2L_8636544_SNP [dm3] 2L_8636544_SNP [dm6]	T	G	5.379e^-4	0.987	INTRON Sema-1a
2R	14093787	2R_14093787_SNP [dm3] 2R_18206282_SNP [dm6]	T	C	5.379e^-4	0.987	INTERGENIC
X	5728212	X_5728212_SNP [dm3] X_5834179_SNP [dm6]	T	C	5.387e^-4	0.987	INTRON CG15765
2L	8043077	2L_8043077_SNP [dm3] 2L_8043077_SNP [dm6]	G	A	5.406e^-4	0.987	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14997800	2R_14997800_SNP [dm3] 2R_19110295_SNP [dm6]	G	A	5.407e^-4	0.987	INTRON 5-HT1A
2R	14997832	2R_14997832_SNP [dm3] 2R_19110327_SNP [dm6]	G	A	5.407e^-4	0.987	INTRON 5-HT1A
2R	14997835	2R_14997835_SNP [dm3] 2R_19110330_SNP [dm6]	T	A	5.407e^-4	0.987	INTRON 5-HT1A

By genomic position
Variant impact
Gene name

mn_Resp_1_Acetophen phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results