DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.580e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1980 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2951874	3L_2951874_SNP [dm3] 3L_2951874_SNP [dm6]	A	T	2.176e^-6	0.827	UPSTREAM CG32846 INTRON Shab
3R	14705048	3R_14705048_SNP [dm3] 3R_18879326_SNP [dm6]	G	A	2.191e^-6	0.827	INTERGENIC
3L	2951920	3L_2951920_INS [dm3] 3L_2951920_INS [dm6]	T	TAT	2.194e^-6	0.827	UPSTREAM CG32846 INTRON Shab
3L	2951845	3L_2951845_SNP [dm3] 3L_2951845_SNP [dm6]	C	T	2.267e^-6	0.827	UPSTREAM CG32846 INTRON Shab
2L	14730944	2L_14730944_SNP [dm3] 2L_14730944_SNP [dm6]	A	G	2.479e^-6	0.827	UPSTREAM CG42685 INTERGENIC
X	12374671	X_12374671_SNP [dm3] X_12480638_SNP [dm6]	G	T	2.813e^-6	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6246172	2L_6246172_SNP [dm3] 2L_6246172_SNP [dm6]	G	C	3.085e^-6	0.827	INTERGENIC
2L	5395767	2L_5395767_DEL [dm3] 2L_5395767_DEL [dm6]	CC	C	4.409e^-6	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5263275	3R_5263275_SNP [dm3] 3R_9437553_SNP [dm6]	A	T	5.893e^-6	0.924	INTRON ps	TF binding site mE1_TFBS_Trl
3R	25337775	3R_25337775_SNP [dm3] 3R_29512053_SNP [dm6]	A	T	5.908e^-6	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19597685	X_19597685_SNP [dm3] X_19703652_SNP [dm6]	C	T	6.965e^-6	0.924	SYNONYMOUS_CODING CG14232 UPSTREAM CG14230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	916240	2L_916240_SNP [dm3] 2L_916240_SNP [dm6]	T	C	7.113e^-6	0.924	INTRON GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4769791	3L_4769791_SNP [dm3] 3L_4769791_SNP [dm6]	T	C	7.206e^-6	0.924	INTRON RhoGEF64C
2R	15523270	2R_15523270_SNP [dm3] 2R_19635765_SNP [dm6]	G	A	7.486e^-6	0.924	UTR_3_PRIME CG42753 UPSTREAM CG18367
3R	18566015	3R_18566015_SNP [dm3] 3R_22740293_SNP [dm6]	C	T	8.012e^-6	0.924	SYNONYMOUS_CODING Dcr-1 UPSTREAM CG6985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5208717	3L_5208717_SNP [dm3] 3L_5215617_SNP [dm6]	A	G	8.385e^-6	0.924	INTRON shep
2L	6190856	2L_6190856_SNP [dm3] 2L_6190856_SNP [dm6]	A	G	8.407e^-6	0.924	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	22300257	2L_22300257_SNP [dm3] 2L_22300257_SNP [dm6]	G	A	9.868e^-6	0.924	INTERGENIC	transposable element FlyBase
3R	22354353	3R_22354353_SNP [dm3] 3R_26528631_SNP [dm6]	C	T	1.026e^-5	0.924	INTRON plum
2L	5022864	2L_5022864_SNP [dm3] 2L_5022864_SNP [dm6]	G	A	1.066e^-5	0.924	INTRON vkg
2R	9783044	2R_9783044_SNP [dm3] 2R_13895539_SNP [dm6]	A	G	1.093e^-5	0.924	INTRON shot
2R	8777318	2R_8777318_SNP [dm3] 2R_12889813_SNP [dm6]	G	A	1.383e^-5	0.924	INTRON vg	TF binding site BDTNP1_TFBS_da
2L	13899266	2L_13899266_SNP [dm3] 2L_13899266_SNP [dm6]	C	T	1.408e^-5	0.924	UTR_3_PRIME Smg5 DOWNSTREAM Smg5 & 1 other
3R	11836605	3R_11836605_SNP [dm3] 3R_16010883_SNP [dm6]	T	C	1.416e^-5	0.924	INTRON GATAe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15290672	2R_15290672_SNP [dm3] 2R_19403167_SNP [dm6]	T	C	1.421e^-5	0.924	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14161722	2L_14161722_DEL [dm3] 2L_14161722_DEL [dm6]	GGCTCTTCAGTCGTTG...	G	1.463e^-5	0.924	CODON_DELETION CG43332	TF binding site mE1_TFBS_sens
2L	6190860	2L_6190860_SNP [dm3] 2L_6190860_SNP [dm6]	T	C	1.533e^-5	0.924	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19167763	X_19167763_SNP [dm3] X_19273730_SNP [dm6]	A	G	1.696e^-5	0.924	UTR_3_PRIME CG32537 DOWNSTREAM Vav	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12374543	X_12374543_SNP [dm3] X_12480510_SNP [dm6]	C	A	1.713e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5395561	2L_5395561_SNP [dm3] 2L_5395561_SNP [dm6]	C	T	1.745e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6311949	3R_6311949_SNP [dm3] 3R_10486227_SNP [dm6]	G	T	1.833e^-5	0.924	INTERGENIC
3L	2208446	3L_2208446_SNP [dm3] 3L_2208446_SNP [dm6]	T	C	1.899e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6142485	2R_6142485_SNP [dm3] 2R_10254980_SNP [dm6]	A	C	1.913e^-5	0.924	UTR_3_PRIME CG12913 DOWNSTREAM CG12913
2L	1318244	2L_1318244_SNP [dm3] 2L_1318244_SNP [dm6]	T	G	2.072e^-5	0.924	INTERGENIC
3R	965441	3R_965441_DEL [dm3] 3R_5139719_DEL [dm6]	ATTCATTAA	C	2.135e^-5	0.924	UPSTREAM CG12589 INTERGENIC
3R	965452	3R_965452_DEL [dm3] 3R_5139730_DEL [dm6]	GACATT	G	2.135e^-5	0.924	UPSTREAM CG12589 INTERGENIC
2R	15523255	2R_15523255_SNP [dm3] 2R_19635750_SNP [dm6]	G	A	2.246e^-5	0.924	UTR_3_PRIME CG42753 UPSTREAM CG18367
3L	5927942	3L_5927942_DEL [dm3] 3L_5934842_DEL [dm6]	TT	T	2.321e^-5	0.924	INTRON CG33993
2R	15289587	2R_15289587_SNP [dm3] 2R_19402082_SNP [dm6]	G	T	2.359e^-5	0.924	NON_SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad
2L	1777233	2L_1777233_SNP [dm3] 2L_1777233_SNP [dm6]	A	G	2.367e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8497563	2L_8497563_SNP [dm3] 2L_8497563_SNP [dm6]	G	A	2.379e^-5	0.924	INTRON Dh31
2L	13899265	2L_13899265_SNP [dm3] 2L_13899265_SNP [dm6]	T	C	2.414e^-5	0.924	UTR_3_PRIME Smg5 DOWNSTREAM Smg5 & 1 other
2R	16985793	2R_16985793_SNP [dm3] 2R_21098288_SNP [dm6]	G	C	2.594e^-5	0.924	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8932827	2R_8932827_SNP [dm3] 2R_13045322_SNP [dm6]	G	T	2.652e^-5	0.924	UTR_3_PRIME CG13323	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7168194	2L_7168194_SNP [dm3] 2L_7168194_SNP [dm6]	C	A	2.693e^-5	0.924	INTERGENIC
2L	5395523	2L_5395523_SNP [dm3] 2L_5395523_SNP [dm6]	C	A	2.732e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6327545	2R_6327545_SNP [dm3] 2R_10440040_SNP [dm6]	T	C	2.736e^-5	0.924	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3R	14705107	3R_14705107_SNP [dm3] 3R_18879385_SNP [dm6]	A	G	2.743e^-5	0.924	INTERGENIC
3R	11848460	3R_11848460_SNP [dm3] 3R_16022738_SNP [dm6]	G	C	2.806e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_sens
3R	24637730	3R_24637730_SNP [dm3] 3R_28812008_SNP [dm6]	T	C	2.818e^-5	0.924	UPSTREAM CG1646 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20382532	3R_20382532_SNP [dm3] 3R_24556810_SNP [dm6]	T	C	2.828e^-5	0.924	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15290654	2R_15290654_SNP [dm3] 2R_19403149_SNP [dm6]	A	C	2.834e^-5	0.924	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17181397	3L_17181397_SNP [dm3] 3L_17188297_SNP [dm6]	C	T	2.844e^-5	0.924	INTRON Rbp6
2R	9259124	2R_9259124_SNP [dm3] 2R_13371619_SNP [dm6]	G	C	2.845e^-5	0.924	INTERGENIC
3L	8406591	3L_8406591_SNP [dm3] 3L_8413491_SNP [dm6]	C	G	2.915e^-5	0.924	SYNONYMOUS_CODING mtrm UPSTREAM Oseg1 INTRON Exo70
3R	14657353	3R_14657353_SNP [dm3] 3R_18831631_SNP [dm6]	G	C	2.932e^-5	0.924	INTRON CG18208
2L	14161978	2L_14161978_SNP [dm3] 2L_14161978_SNP [dm6]	T	C	2.963e^-5	0.924	NON_SYNONYMOUS_CODING CG43332	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13555318	3R_13555318_SNP [dm3] 3R_17729596_SNP [dm6]	T	A	2.975e^-5	0.924	INTRON Lgr1
2R	14690755	2R_14690755_SNP [dm3] 2R_18803250_SNP [dm6]	T	C	3.154e^-5	0.924	UTR_5_PRIME l_2_08717 UPSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	9315200	3L_9315200_SNP [dm3] 3L_9322100_SNP [dm6]	G	A	3.178e^-5	0.924	INTERGENIC
X	8154132	X_8154132_SNP [dm3] X_8260099_SNP [dm6]	G	A	3.272e^-5	0.924	INTRON CG1632
2R	19944301	2R_19944301_SNP [dm3] 2R_24056778_SNP [dm6]	C	T	3.367e^-5	0.924	SYNONYMOUS_CODING CG13563 INTRON ppk29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8827896	3L_8827896_SNP [dm3] 3L_8834796_SNP [dm6]	A	G	3.414e^-5	0.924	INTRON dally	TF binding site mE1_TFBS_inv
3L	19502939	3L_19502939_SNP [dm3] 3L_19509839_SNP [dm6]	T	G	3.440e^-5	0.924	INTERGENIC
X	8340161	X_8340161_SNP [dm3] X_8446128_SNP [dm6]	C	T	3.576e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13950021	2L_13950021_SNP [dm3] 2L_13950021_SNP [dm6]	A	G	3.611e^-5	0.924	INTRON Ance-3
2L	8143732	2L_8143732_SNP [dm3] 2L_8143732_SNP [dm6]	T	G	3.619e^-5	0.924	NON_SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10488744	X_10488744_SNP [dm3] X_10594711_SNP [dm6]	G	A	3.811e^-5	0.924	SYNONYMOUS_CODING Hmr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16824598	2R_16824598_SNP [dm3] 2R_20937093_SNP [dm6]	A	T	3.868e^-5	0.924	DOWNSTREAM Rx INTERGENIC
3R	18224863	3R_18224863_SNP [dm3] 3R_22399141_SNP [dm6]	T	G	3.924e^-5	0.924	INTERGENIC
2L	9640847	2L_9640847_SNP [dm3] 2L_9640847_SNP [dm6]	T	C	4.090e^-5	0.924	INTRON Apoltp
2R	18015761	2R_18015761_SNP [dm3] 2R_22128256_SNP [dm6]	A	C	4.140e^-5	0.924	UPSTREAM GM130 INTRON NtR	TF binding site mE1_TFBS_cad
2L	5592326	2L_5592326_SNP [dm3] 2L_5592326_SNP [dm6]	A	T	4.378e^-5	0.924	INTERGENIC
3L	316220	3L_316220_SNP [dm3] 3L_316220_SNP [dm6]	G	A	4.382e^-5	0.924	UPSTREAM CG34264 INTRON fwd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5022885	2L_5022885_SNP [dm3] 2L_5022885_SNP [dm6]	G	A	4.414e^-5	0.924	INTRON vkg
2L	13264742	2L_13264742_DEL [dm3] 2L_13264742_DEL [dm6]	TT	T	4.514e^-5	0.924	DOWNSTREAM CG31848 INTRON CG44085
X	7856022	X_7856022_SNP [dm3] X_7961989_SNP [dm6]	G	A	4.520e^-5	0.924	SYNONYMOUS_CODING sws
3R	24832160	3R_24832160_SNP [dm3] 3R_29006438_SNP [dm6]	C	T	4.534e^-5	0.924	INTRON wat
2L	9856342	2L_9856342_DEL [dm3] 2L_9856342_DEL [dm6]	CC	C	4.546e^-5	0.924	INTRON nAChRalpha6
2R	17007001	2R_17007001_SNP [dm3] 2R_21119496_SNP [dm6]	T	A	4.571e^-5	0.924	NON_SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4948178	3R_4948178_SNP [dm3] 3R_9122456_SNP [dm6]	A	G	4.713e^-5	0.924	INTRON pum
2L	6481866	2L_6481866_SNP [dm3] 2L_6481866_SNP [dm6]	A	T	4.762e^-5	0.924	UPSTREAM CR45463 INTRON DLP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17295276	2R_17295276_SNP [dm3] 2R_21407771_SNP [dm6]	G	A	4.785e^-5	0.924	INTRON Sdc
3L	13157340	3L_13157340_SNP [dm3] 3L_13164240_SNP [dm6]	A	T	4.808e^-5	0.924	INTERGENIC
2L	3394389	2L_3394389_SNP [dm3] 2L_3394389_SNP [dm6]	G	T	4.833e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26057396	3R_26057396_SNP [dm3] 3R_30231674_SNP [dm6]	C	T	4.856e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
2L	4204708	2L_4204708_SNP [dm3] 2L_4204708_SNP [dm6]	G	A	4.883e^-5	0.924	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	19507166	3L_19507166_SNP [dm3] 3L_19514066_SNP [dm6]	G	A	4.914e^-5	0.924	INTERGENIC
X	12374544	X_12374544_SNP [dm3] X_12480511_SNP [dm6]	C	T	4.950e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19236499	2R_19236499_SNP [dm3] 2R_23348976_SNP [dm6]	C	A	5.061e^-5	0.924	INTERGENIC
3L	4103170	3L_4103170_SNP [dm3] 3L_4103170_SNP [dm6]	A	T	5.184e^-5	0.924	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	22298477	2L_22298477_SNP [dm3] 2L_22298477_SNP [dm6]	T	C	5.186e^-5	0.924	INTERGENIC
3R	14657313	3R_14657313_SNP [dm3] 3R_18831591_SNP [dm6]	G	C	5.234e^-5	0.924	INTRON CG18208
2R	9571925	2R_9571925_SNP [dm3] 2R_13684420_SNP [dm6]	G	T	5.357e^-5	0.924	INTRON fas
3L	4340699	3L_4340699_SNP [dm3] 3L_4340699_SNP [dm6]	G	C	5.360e^-5	0.924	INTRON Cip4
X	10807640	X_10807640_DEL [dm3] X_10913607_DEL [dm6]	TATGT	T	5.361e^-5	0.924	INTRON CG43901
2L	10041965	2L_10041965_SNP [dm3] 2L_10041965_SNP [dm6]	G	T	5.400e^-5	0.924	INTERGENIC
X	15360491	X_15360491_SNP [dm3] X_15466458_SNP [dm6]	C	A	5.400e^-5	0.924	SYNONYMOUS_CODING CG6299 UTR_3_PRIME CG15642 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14878756	X_14878756_INS [dm3] X_14984723_INS [dm6]	C	CCCGCATTTTCC...	5.455e^-5	0.924	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14198106	X_14198106_SNP [dm3] X_14304073_SNP [dm6]	A	C	5.506e^-5	0.924	INTERGENIC
3R	10507954	3R_10507954_SNP [dm3] 3R_14682232_SNP [dm6]	T	A	5.575e^-5	0.924	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10897869	3L_10897869_SNP [dm3] 3L_10904769_SNP [dm6]	T	C	5.593e^-5	0.924	INTERGENIC
2L	13616409	2L_13616409_SNP [dm3] 2L_13616409_SNP [dm6]	G	C	5.600e^-5	0.924	INTRON kuz
3L	10977210	3L_10977210_SNP [dm3] 3L_10984110_SNP [dm6]	A	G	5.613e^-5	0.924	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26069921	3R_26069921_SNP [dm3] 3R_30244199_SNP [dm6]	T	G	5.633e^-5	0.924	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
2L	22294407	2L_22294407_DEL [dm3] 2L_22294407_DEL [dm6]	TGCTGGTTCTGCGTGAGCCG...	T	5.650e^-5	0.924	INTERGENIC
3R	14657314	3R_14657314_SNP [dm3] 3R_18831592_SNP [dm6]	T	G	5.659e^-5	0.924	INTRON CG18208
2L	1484622	2L_1484622_SNP [dm3] 2L_1484622_SNP [dm6]	A	C	5.744e^-5	0.924	INTERGENIC
3L	8827857	3L_8827857_SNP [dm3] 3L_8834757_SNP [dm6]	G	A	5.750e^-5	0.924	INTRON dally	TF binding site mE1_TFBS_inv
3R	18224812	3R_18224812_SNP [dm3] 3R_22399090_SNP [dm6]	G	C	5.766e^-5	0.924	INTERGENIC
2L	17604215	2L_17604215_SNP [dm3] 2L_17604215_SNP [dm6]	G	A	5.846e^-5	0.924	UTR_3_PRIME Sytalpha DOWNSTREAM Sytalpha
2L	6224816	2L_6224816_SNP [dm3] 2L_6224816_SNP [dm6]	C	A	5.885e^-5	0.924	UPSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16022285	X_16022285_SNP [dm3] X_16128252_SNP [dm6]	G	C	5.936e^-5	0.924	INTRON disco-r
X	18777708	X_18777708_SNP [dm3] X_18883675_SNP [dm6]	A	G	5.955e^-5	0.924	UTR_3_PRIME CG34401 UPSTREAM CG7332	TF binding site mE1_TFBS_HSA
3L	21418496	3L_21418496_SNP [dm3] 3L_21425396_SNP [dm6]	T	C	6.014e^-5	0.924	NON_SYNONYMOUS_CODING barc DOWNSTREAM rgn
X	18820361	X_18820361_DEL [dm3] X_18926328_DEL [dm6]	ACA	A	6.191e^-5	0.924	INTERGENIC
2L	6481844	2L_6481844_SNP [dm3] 2L_6481844_SNP [dm6]	A	C	6.302e^-5	0.924	UPSTREAM CR45463 INTRON DLP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl mE1_TFBS_Ubx
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	6.330e^-5	0.924	INTRON CR44997
2R	18648769	2R_18648769_SNP [dm3] 2R_22761264_SNP [dm6]	G	A	6.469e^-5	0.924	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	18777695	X_18777695_SNP [dm3] X_18883662_SNP [dm6]	G	A	6.584e^-5	0.924	UTR_3_PRIME CG34401 UPSTREAM CG7332
X	14198064	X_14198064_INS [dm3] X_14304031_INS [dm6]	A	GTAT	6.612e^-5	0.924	INTERGENIC
3R	24832186	3R_24832186_SNP [dm3] 3R_29006464_SNP [dm6]	C	T	6.627e^-5	0.924	INTRON wat
2L	7328337	2L_7328337_SNP [dm3] 2L_7328337_SNP [dm6]	T	C	6.638e^-5	0.924	DOWNSTREAM CR45304 INTERGENIC
X	16984795	X_16984795_SNP [dm3] X_17090762_SNP [dm6]	T	C	6.685e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10748626	X_10748626_SNP [dm3] X_10854593_SNP [dm6]	C	T	6.753e^-5	0.924	SYNONYMOUS_CODING feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	21135985	2L_21135985_SNP [dm3] 2L_21135985_SNP [dm6]	T	G	6.874e^-5	0.924	UTR_3_PRIME Dap160 INTRON Dap160
3R	24832190	3R_24832190_SNP [dm3] 3R_29006468_SNP [dm6]	T	G	6.935e^-5	0.924	INTRON wat
3L	8406951	3L_8406951_SNP [dm3] 3L_8413851_SNP [dm6]	A	G	7.002e^-5	0.924	UTR_3_PRIME mtrm INTRON Exo70
2R	17851594	2R_17851594_MNP [dm3] 2R_21964089_MNP [dm6]	AAC	TCA	7.038e^-5	0.924	UPSTREAM ppk9 INTERGENIC
3R	1034618	3R_1034618_DEL [dm3] 3R_5208896_DEL [dm6]	CGCAGCGC	C	7.082e^-5	0.924	INTRON cno
2L	6382686	2L_6382686_SNP [dm3] 2L_6382686_SNP [dm6]	T	C	7.174e^-5	0.924	SYNONYMOUS_CODING CG9507 DOWNSTREAM CG42370 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15779113	2R_15779113_SNP [dm3] 2R_19891608_SNP [dm6]	G	A	7.228e^-5	0.924	INTERGENIC
3R	25237202	3R_25237202_SNP [dm3] 3R_29411480_SNP [dm6]	C	T	7.313e^-5	0.924	INTRON Ptp99A
2L	5395364	2L_5395364_SNP [dm3] 2L_5395364_SNP [dm6]	C	T	7.365e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18950862	X_18950862_SNP [dm3] X_19056829_SNP [dm6]	T	C	7.407e^-5	0.924	UPSTREAM CG14190 INTERGENIC
X	14198053	X_14198053_DEL [dm3] X_14304020_DEL [dm6]	AAG	A	7.467e^-5	0.924	INTERGENIC
X	12407396	X_12407396_SNP [dm3] X_12513363_SNP [dm6]	G	A	7.651e^-5	0.924	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	295561	3L_295561_SNP [dm3] 3L_295561_SNP [dm6]	C	T	7.902e^-5	0.924	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12465284	3R_12465284_SNP [dm3] 3R_16639562_SNP [dm6]	G	A	7.905e^-5	0.924	UTR_3_PRIME Fas1 UPSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl
3L	8327377	3L_8327377_SNP [dm3] 3L_8334277_SNP [dm6]	G	A	7.981e^-5	0.924	INTERGENIC
3R	11019328	3R_11019328_SNP [dm3] 3R_15193606_SNP [dm6]	C	A	8.014e^-5	0.924	NON_SYNONYMOUS_CODING CG6752
2L	4207719	2L_4207719_SNP [dm3] 2L_4207719_SNP [dm6]	G	A	8.080e^-5	0.924	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18777694	X_18777694_SNP [dm3] X_18883661_SNP [dm6]	A	G	8.148e^-5	0.924	UTR_3_PRIME CG34401 UPSTREAM CG7332
2R	10342025	2R_10342025_INS [dm3] 2R_14454520_INS [dm6]	A	AACCTGG	8.169e^-5	0.924	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3376436	2L_3376436_SNP [dm3] 2L_3376436_SNP [dm6]	C	T	8.299e^-5	0.924	UPSTREAM CG15412 & 1 other INTRON CG9662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	3376445	2L_3376445_DEL [dm3] 2L_3376445_DEL [dm6]	TTAA	T	8.299e^-5	0.924	UPSTREAM CG15412 & 1 other INTRON CG9662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	18950946	X_18950946_SNP [dm3] X_19056913_SNP [dm6]	C	A	8.324e^-5	0.924	UTR_5_PRIME CG14190
3L	17710481	3L_17710481_SNP [dm3] 3L_17717381_SNP [dm6]	A	T	8.335e^-5	0.924	INTRON Ccn
X	18451039	X_18451039_SNP [dm3] X_18557006_SNP [dm6]	C	T	8.394e^-5	0.924	INTRON Bx
X	14198068	X_14198068_INS [dm3] X_14304035_INS [dm6]	A	ATGT	8.413e^-5	0.924	INTERGENIC
3R	5940953	3R_5940953_SNP [dm3] 3R_10115231_SNP [dm6]	C	A	8.416e^-5	0.924	INTRON CG3940
3R	21456557	3R_21456557_SNP [dm3] 3R_25630835_SNP [dm6]	A	G	8.443e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12676560	X_12676560_SNP [dm3] X_12782527_SNP [dm6]	A	C	8.855e^-5	0.924	INTRON CG32647
3R	25114484	3R_25114484_SNP [dm3] 3R_29288762_SNP [dm6]	A	T	8.858e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	10481297	2R_10481297_SNP [dm3] 2R_14593792_SNP [dm6]	A	G	9.109e^-5	0.924	SYNONYMOUS_CODING CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8839467	3L_8839467_SNP [dm3] 3L_8846367_SNP [dm6]	A	T	9.120e^-5	0.924	INTRON dally
3R	27004987	3R_27004987_SNP [dm3] 3R_31179265_SNP [dm6]	G	T	9.139e^-5	0.924	DOWNSTREAM Gycbeta100B & 1 other INTRON mesh
3L	8824670	3L_8824670_SNP [dm3] 3L_8831570_SNP [dm6]	C	G	9.172e^-5	0.924	INTRON dally
X	10748670	X_10748670_SNP [dm3] X_10854637_SNP [dm6]	T	A	9.278e^-5	0.924	UTR_5_PRIME feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15175970	2L_15175970_SNP [dm3] 2L_15175970_SNP [dm6]	C	T	9.367e^-5	0.924	INTRON CG4168
3R	17676090	3R_17676090_SNP [dm3] 3R_21850368_SNP [dm6]	G	A	9.385e^-5	0.924	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6481869	2L_6481869_SNP [dm3] 2L_6481869_SNP [dm6]	A	G	9.407e^-5	0.924	UPSTREAM CR45463 INTRON DLP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl mE1_TFBS_Ubx
X	12407421	X_12407421_SNP [dm3] X_12513388_SNP [dm6]	C	A	9.454e^-5	0.924	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17155024	3L_17155024_SNP [dm3] 3L_17161924_SNP [dm6]	A	G	9.466e^-5	0.924	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8406516	3L_8406516_SNP [dm3] 3L_8413416_SNP [dm6]	G	A	9.496e^-5	0.924	SYNONYMOUS_CODING mtrm UPSTREAM Oseg1 INTRON Exo70
2R	17781679	2R_17781679_SNP [dm3] 2R_21894174_SNP [dm6]	G	A	9.641e^-5	0.924	INTRON Fili
X	1870535	X_1870535_INS [dm3] X_1976502_INS [dm6]	G	GGGG	9.694e^-5	0.924	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9406989	2L_9406989_DEL [dm3] 2L_9406989_DEL [dm6]	GCG	G	9.760e^-5	0.924	INTRON Shawl
3L	238579	3L_238579_SNP [dm3] 3L_238579_SNP [dm6]	T	C	9.789e^-5	0.924	UTR_3_PRIME E_bx_ INTRON E_bx_
3R	26525950	3R_26525950_SNP [dm3] 3R_30700228_SNP [dm6]	A	C	9.858e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12087753	X_12087753_SNP [dm3] X_12193720_SNP [dm6]	C	T	9.868e^-5	0.924	START_GAINED Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_cad
X	13227130	X_13227130_SNP [dm3] X_13333097_SNP [dm6]	A	G	9.878e^-5	0.924	INTERGENIC
3L	3870179	3L_3870179_DEL [dm3] 3L_3870179_DEL [dm6]	TC	T	9.945e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11520153	2L_11520153_SNP [dm3] 2L_11520153_SNP [dm6]	G	A	9.977e^-5	0.924	SYNONYMOUS_CODING CG14929 DOWNSTREAM CG14930 & 1 other
2L	7186827	2L_7186827_SNP [dm3] 2L_7186827_SNP [dm6]	C	A	1.001e^-4	0.924	SPLICE_SITE_REGION CG4496 INTRON CG4496	TF binding site mE1_TFBS_HSA
X	1870531	X_1870531_INS [dm3] X_1976498_INS [dm6]	G	GG	1.016e^-4	0.924	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	7059793	3R_7059793_SNP [dm3] 3R_11234071_SNP [dm6]	G	A	1.020e^-4	0.924	SYNONYMOUS_CODING Arfip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6243385	3L_6243385_SNP [dm3] 3L_6250285_SNP [dm6]	G	A	1.021e^-4	0.924	INTRON Best2
X	18975844	X_18975844_INS [dm3] X_19081811_INS [dm6]	T	TT	1.026e^-4	0.924	DOWNSTREAM CG7423 INTRON CG14191	TF binding site mE1_TFBS_chinmo
2L	16419824	2L_16419824_SNP [dm3] 2L_16419824_SNP [dm6]	T	G	1.031e^-4	0.924	INTRON CG5888
2L	1317251	2L_1317251_SNP [dm3] 2L_1317251_SNP [dm6]	G	A	1.036e^-4	0.924	INTERGENIC
3L	11523304	3L_11523304_SNP [dm3] 3L_11530204_SNP [dm6]	T	C	1.041e^-4	0.924	INTRON Mob2
3R	21751471	3R_21751471_SNP [dm3] 3R_25925749_SNP [dm6]	T	A	1.041e^-4	0.924	INTRON CCAP-R
3R	17803776	3R_17803776_SNP [dm3] 3R_21978054_SNP [dm6]	C	G	1.041e^-4	0.924	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl
2R	16985847	2R_16985847_SNP [dm3] 2R_21098342_SNP [dm6]	C	T	1.041e^-4	0.924	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11417786	3R_11417786_SNP [dm3] 3R_15592064_SNP [dm6]	T	A	1.052e^-4	0.924	INTERGENIC
2L	14167271	2L_14167271_SNP [dm3] 2L_14167271_SNP [dm6]	A	G	1.060e^-4	0.924	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_chinmo
X	14845328	X_14845328_SNP [dm3] X_14951295_SNP [dm6]	G	A	1.062e^-4	0.924	UPSTREAM pdgy INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15289707	2R_15289707_SNP [dm3] 2R_19402202_SNP [dm6]	A	T	1.064e^-4	0.924	NON_SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6401637	3R_6401637_DEL [dm3] 3R_10575915_DEL [dm6]	AAGTAGAAA	A	1.065e^-4	0.924	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9407495	2L_9407495_DEL [dm3] 2L_9407495_DEL [dm6]	TCATCGTTGAGTGCTTTCAG...	T	1.070e^-4	0.924	INTRON Shawl
2L	17304435	2L_17304435_SNP [dm3] 2L_17304435_SNP [dm6]	A	C	1.074e^-4	0.924	INTERGENIC
3R	7058747	3R_7058747_SNP [dm3] 3R_11233025_SNP [dm6]	C	G	1.076e^-4	0.924	UTR_3_PRIME Arfip DOWNSTREAM CG14701	TF binding site mE1_TFBS_cad
3R	7199468	3R_7199468_SNP [dm3] 3R_11373746_SNP [dm6]	T	G	1.081e^-4	0.924	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	922998	3R_922998_SNP [dm3] 3R_5097276_SNP [dm6]	A	T	1.091e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20382526	3R_20382526_SNP [dm3] 3R_24556804_SNP [dm6]	C	T	1.100e^-4	0.924	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6365551	3L_6365551_SNP [dm3] 3L_6372451_SNP [dm6]	T	A	1.101e^-4	0.924	INTERGENIC
2R	8464815	2R_8464815_SNP [dm3] 2R_12577310_SNP [dm6]	G	T	1.102e^-4	0.924	INTRON Sin3A
2L	21149705	2L_21149705_SNP [dm3] 2L_21149705_SNP [dm6]	C	T	1.108e^-4	0.924	INTERGENIC	transposable element FlyBase
2L	6560337	2L_6560337_SNP [dm3] 2L_6560337_SNP [dm6]	A	G	1.110e^-4	0.924	SYNONYMOUS_CODING CG9596 DOWNSTREAM CG11043	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4101366	3L_4101366_SNP [dm3] 3L_4101366_SNP [dm6]	A	G	1.110e^-4	0.924	UPSTREAM CG14995 INTRON CG14995	TF binding site BDTNP1_TFBS_dl
X	14153429	X_14153429_SNP [dm3] X_14259396_SNP [dm6]	A	T	1.112e^-4	0.924	DOWNSTREAM mud INTERGENIC
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	1.113e^-4	0.924	INTERGENIC
3R	22037308	3R_22037308_SNP [dm3] 3R_26211586_SNP [dm6]	C	G	1.115e^-4	0.924	INTERGENIC
2R	12529038	2R_12529038_INS [dm3] 2R_16641533_INS [dm6]	A	ATA	1.117e^-4	0.924	UTR_5_PRIME gprs INTRON gprs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9551801	3R_9551801_SNP [dm3] 3R_13726079_SNP [dm6]	G	A	1.124e^-4	0.924	INTRON CG34383
X	12239939	X_12239939_SNP [dm3] X_12345906_SNP [dm6]	T	A	1.125e^-4	0.924	INTERGENIC
2R	8108923	2R_8108923_DEL [dm3] 2R_12221418_DEL [dm6]	AA	A	1.129e^-4	0.924	INTERGENIC
3R	22037307	3R_22037307_SNP [dm3] 3R_26211585_SNP [dm6]	A	C	1.130e^-4	0.924	INTERGENIC
3R	4438149	3R_4438149_INS [dm3] 3R_8612427_INS [dm6]	G	GCAGATGGTTGGATGGG...	1.131e^-4	0.924	INTRON 5-HT2B
X	6196540	X_6196540_SNP [dm3] X_6302507_SNP [dm6]	T	C	1.152e^-4	0.924	INTERGENIC
3R	24649161	3R_24649161_SNP [dm3] 3R_28823439_SNP [dm6]	T	C	1.152e^-4	0.924	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	20211794	3L_20211794_SNP [dm3] 3L_20218694_SNP [dm6]	G	T	1.153e^-4	0.924	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
3L	10324510	3L_10324510_SNP [dm3] 3L_10331410_SNP [dm6]	A	T	1.157e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9551810	3R_9551810_SNP [dm3] 3R_13726088_SNP [dm6]	G	T	1.163e^-4	0.924	INTRON CG34383
2L	21153999	2L_21153999_SNP [dm3] 2L_21153999_SNP [dm6]	T	C	1.165e^-4	0.924	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	25114512	3R_25114512_SNP [dm3] 3R_29288790_SNP [dm6]	A	G	1.175e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15062285	3R_15062285_SNP [dm3] 3R_19236563_SNP [dm6]	G	T	1.181e^-4	0.924	INTRON unc79
2L	3394393	2L_3394393_SNP [dm3] 2L_3394393_SNP [dm6]	G	C	1.183e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15031941	2R_15031941_SNP [dm3] 2R_19144436_SNP [dm6]	A	C	1.188e^-4	0.924	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15062288	3R_15062288_SNP [dm3] 3R_19236566_SNP [dm6]	A	G	1.197e^-4	0.924	INTRON unc79
2L	4165952	2L_4165952_SNP [dm3] 2L_4165952_SNP [dm6]	G	T	1.200e^-4	0.924	SYNONYMOUS_CODING Or24a
2L	6481860	2L_6481860_SNP [dm3] 2L_6481860_SNP [dm6]	A	T	1.216e^-4	0.924	UPSTREAM CR45463 INTRON DLP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl mE1_TFBS_Ubx
2L	21136146	2L_21136146_SNP [dm3] 2L_21136146_SNP [dm6]	T	A	1.221e^-4	0.924	UTR_3_PRIME Dap160 DOWNSTREAM Dap160 INTRON Dap160
3R	26676542	3R_26676542_SNP [dm3] 3R_30850820_SNP [dm6]	G	A	1.222e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8332573	2L_8332573_SNP [dm3] 2L_8332573_SNP [dm6]	T	C	1.222e^-4	0.924	SYNONYMOUS_CODING CG14275
X	12270217	X_12270217_SNP [dm3] X_12376184_SNP [dm6]	G	A	1.224e^-4	0.924	SYNONYMOUS_CODING Ir11a	TF binding site mE1_TFBS_chinmo
3L	8913776	3L_8913776_SNP [dm3] 3L_8920676_SNP [dm6]	G	C	1.228e^-4	0.924	INTRON Tsp66E
2R	15032468	2R_15032468_SNP [dm3] 2R_19144963_SNP [dm6]	T	G	1.234e^-4	0.924	INTRON ena EXON CR43399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12689417	3L_12689417_SNP [dm3] 3L_12696317_SNP [dm6]	C	T	1.234e^-4	0.924	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15032245	2R_15032245_SNP [dm3] 2R_19144740_SNP [dm6]	C	T	1.236e^-4	0.924	INTRON ena EXON CR43399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7058757	3R_7058757_SNP [dm3] 3R_11233035_SNP [dm6]	C	T	1.236e^-4	0.924	UTR_3_PRIME Arfip DOWNSTREAM CG14701	TF binding site mE1_TFBS_cad
3R	26069924	3R_26069924_SNP [dm3] 3R_30244202_SNP [dm6]	T	C	1.246e^-4	0.924	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
2R	16986615	2R_16986615_SNP [dm3] 2R_21099110_SNP [dm6]	G	T	1.246e^-4	0.924	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
3L	11406140	3L_11406140_SNP [dm3] 3L_11413040_SNP [dm6]	C	T	1.254e^-4	0.924	INTERGENIC
2L	22294214	2L_22294214_SNP [dm3] 2L_22294214_SNP [dm6]	T	A	1.256e^-4	0.924	INTERGENIC
X	13634681	X_13634681_SNP [dm3] X_13740648_SNP [dm6]	G	A	1.263e^-4	0.924	INTRON Grip91 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16756329	2R_16756329_SNP [dm3] 2R_20868824_SNP [dm6]	T	C	1.265e^-4	0.924	UTR_3_PRIME IM4 DOWNSTREAM IM4
X	17228310	X_17228310_SNP [dm3] X_17334277_SNP [dm6]	T	G	1.274e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17165211	2R_17165211_SNP [dm3] 2R_21277706_SNP [dm6]	C	G	1.284e^-4	0.924	INTRON Rgk3
X	9464610	X_9464610_SNP [dm3] X_9570577_SNP [dm6]	A	G	1.285e^-4	0.924	SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
2L	17507150	2L_17507150_SNP [dm3] 2L_17507150_SNP [dm6]	T	C	1.294e^-4	0.924	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2L	5438794	2L_5438794_SNP [dm3] 2L_5438794_SNP [dm6]	G	T	1.305e^-4	0.924	INTRON CR31647
2L	4076311	2L_4076311_SNP [dm3] 2L_4076311_SNP [dm6]	A	G	1.310e^-4	0.924	UPSTREAM CR44984 INTRON ed
3R	24649025	3R_24649025_SNP [dm3] 3R_28823303_SNP [dm6]	C	A	1.317e^-4	0.924	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3728190	2L_3728190_SNP [dm3] 2L_3728190_SNP [dm6]	G	C	1.318e^-4	0.924	UTR_3_PRIME Shaw DOWNSTREAM Shaw
2R	9783047	2R_9783047_SNP [dm3] 2R_13895542_SNP [dm6]	G	A	1.322e^-4	0.924	INTRON shot
2L	18348378	2L_18348378_SNP [dm3] 2L_18348378_SNP [dm6]	C	T	1.323e^-4	0.924	INTRON Fas3
2L	9670468	2L_9670468_SNP [dm3] 2L_9670468_SNP [dm6]	T	A	1.325e^-4	0.924	EXON CR44150
X	3971295	X_3971295_SNP [dm3] X_4077262_SNP [dm6]	T	A	1.327e^-4	0.924	INTRON CG43689
2R	18645632	2R_18645632_SNP [dm3] 2R_22758127_SNP [dm6]	T	G	1.327e^-4	0.924	SYNONYMOUS_CODING CG42260 EXON CR30267
2L	11243999	2L_11243999_SNP [dm3] 2L_11243999_SNP [dm6]	T	G	1.330e^-4	0.924	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26120288	3R_26120288_SNP [dm3] 3R_30294566_SNP [dm6]	C	G	1.341e^-4	0.924	INTRON hdc
2L	14164158	2L_14164158_SNP [dm3] 2L_14164158_SNP [dm6]	A	G	1.356e^-4	0.924	SYNONYMOUS_CODING CG43333 UPSTREAM CG43332
2R	8949138	2R_8949138_SNP [dm3] 2R_13061633_SNP [dm6]	C	G	1.356e^-4	0.924	INTRON Drl-2
2L	6247186	2L_6247186_SNP [dm3] 2L_6247186_SNP [dm6]	T	C	1.362e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15031904	2R_15031904_SNP [dm3] 2R_19144399_SNP [dm6]	T	C	1.364e^-4	0.924	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27011186	3R_27011186_SNP [dm3] 3R_31185464_SNP [dm6]	C	T	1.365e^-4	0.924	INTRON mesh
X	12407408	X_12407408_SNP [dm3] X_12513375_SNP [dm6]	T	A	1.375e^-4	0.924	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1131032	2R_1131032_SNP [dm3] 2R_5243527_SNP [dm6]	C	T	1.381e^-4	0.924	NON_SYNONYMOUS_CODING Nipped-A INTRON Nipped-A	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3R	9551803	3R_9551803_SNP [dm3] 3R_13726081_SNP [dm6]	C	A	1.397e^-4	0.924	INTRON CG34383
2R	8962392	2R_8962392_SNP [dm3] 2R_13074887_SNP [dm6]	C	T	1.405e^-4	0.924	INTRON Drl-2
2R	16756325	2R_16756325_SNP [dm3] 2R_20868820_SNP [dm6]	A	T	1.408e^-4	0.924	UTR_3_PRIME IM4 DOWNSTREAM IM4
3L	2177728	3L_2177728_SNP [dm3] 3L_2177728_SNP [dm6]	G	T	1.417e^-4	0.924	INTERGENIC
3L	316904	3L_316904_SNP [dm3] 3L_316904_SNP [dm6]	G	A	1.423e^-4	0.924	UPSTREAM CG34264 INTRON fwd
3L	316907	3L_316907_MNP [dm3] 3L_316907_MNP [dm6]	TGCCCA	ATTTGT	1.423e^-4	0.924	UPSTREAM CG34264 INTRON fwd
3L	316915	3L_316915_MNP [dm3] 3L_316915_MNP [dm6]	TAT	GCG	1.423e^-4	0.924	UPSTREAM CG34264 INTRON fwd
X	16408840	X_16408840_SNP [dm3] X_16514807_SNP [dm6]	T	A	1.426e^-4	0.924	INTRON para
X	2323685	X_2323685_SNP [dm3] X_2429652_SNP [dm6]	A	T	1.428e^-4	0.924	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	24633240	3R_24633240_SNP [dm3] 3R_28807518_SNP [dm6]	G	C	1.433e^-4	0.924	DOWNSTREAM wdn & 1 other INTERGENIC
2R	8950864	2R_8950864_SNP [dm3] 2R_13063359_SNP [dm6]	T	C	1.447e^-4	0.924	INTRON Drl-2
2R	17775943	2R_17775943_SNP [dm3] 2R_21888438_SNP [dm6]	A	T	1.448e^-4	0.924	INTRON Fili
2L	7186790	2L_7186790_SNP [dm3] 2L_7186790_SNP [dm6]	G	T	1.450e^-4	0.924	INTRON CG4496	TF binding site mE1_TFBS_HSA
2R	9572047	2R_9572047_SNP [dm3] 2R_13684542_SNP [dm6]	A	G	1.456e^-4	0.924	INTRON fas
2L	22312171	2L_22312171_SNP [dm3] 2L_22312171_SNP [dm6]	C	T	1.459e^-4	0.924	INTRON CG17018
X	13577902	X_13577902_SNP [dm3] X_13683869_SNP [dm6]	C	A	1.474e^-4	0.924	SYNONYMOUS_CODING CG11158 DOWNSTREAM CG9940	TF binding site mE1_TFBS_sens
3R	3009487	3R_3009487_SNP [dm3] 3R_7183765_SNP [dm6]	A	T	1.479e^-4	0.924	DOWNSTREAM CG10055 & 1 other INTERGENIC
2R	9776682	2R_9776682_SNP [dm3] 2R_13889177_SNP [dm6]	G	A	1.484e^-4	0.924	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10909449	X_10909449_SNP [dm3] X_11015416_SNP [dm6]	A	G	1.486e^-4	0.924	INTRON CG42339	TF binding site mE1_TFBS_inv
3L	316902	3L_316902_SNP [dm3] 3L_316902_SNP [dm6]	G	T	1.494e^-4	0.924	UPSTREAM CG34264 INTRON fwd
3R	435241	3R_435241_SNP [dm3] 3R_4609519_SNP [dm6]	G	T	1.495e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20478484	X_20478484_SNP [dm3] X_20607457_SNP [dm6]	A	G	1.498e^-4	0.924	INTRON RunxA	TF binding site mE1_TFBS_chinmo
X	4289636	X_4289636_SNP [dm3] X_4395603_SNP [dm6]	T	G	1.499e^-4	0.924	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7956601	2R_7956601_SNP [dm3] 2R_12069096_SNP [dm6]	C	T	1.529e^-4	0.924	INTRON CG8888	TF binding site BDTNP1_TFBS_sna
3R	26045729	3R_26045729_SNP [dm3] 3R_30220007_SNP [dm6]	C	T	1.529e^-4	0.924	INTERGENIC
2L	5695102	2L_5695102_SNP [dm3] 2L_5695102_SNP [dm6]	C	T	1.537e^-4	0.924	INTERGENIC
2R	8949103	2R_8949103_SNP [dm3] 2R_13061598_SNP [dm6]	T	C	1.548e^-4	0.924	INTRON Drl-2
2L	3392446	2L_3392446_SNP [dm3] 2L_3392446_SNP [dm6]	A	G	1.554e^-4	0.924	INTERGENIC
3L	5811615	3L_5811615_SNP [dm3] 3L_5818515_SNP [dm6]	C	T	1.566e^-4	0.924	INTRON vn
3R	9686462	3R_9686462_DEL [dm3] 3R_13860740_DEL [dm6]	GT	G	1.567e^-4	0.924	INTERGENIC
3R	24832174	3R_24832174_SNP [dm3] 3R_29006452_SNP [dm6]	G	A	1.569e^-4	0.924	INTRON wat
3R	24832175	3R_24832175_SNP [dm3] 3R_29006453_SNP [dm6]	C	T	1.569e^-4	0.924	INTRON wat
3R	21533573	3R_21533573_SNP [dm3] 3R_25707851_SNP [dm6]	A	G	1.571e^-4	0.924	SYNONYMOUS_CODING LpR2 INTRON LpR2
3L	8406801	3L_8406801_SNP [dm3] 3L_8413701_SNP [dm6]	T	C	1.571e^-4	0.924	SYNONYMOUS_CODING mtrm UPSTREAM Oseg1 INTRON Exo70
2L	21153908	2L_21153908_SNP [dm3] 2L_21153908_SNP [dm6]	C	T	1.571e^-4	0.924	DOWNSTREAM E2f2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
X	16055145	X_16055145_SNP [dm3] X_16161112_SNP [dm6]	A	T	1.576e^-4	0.924	INTERGENIC
2R	10342021	2R_10342021_SNP [dm3] 2R_14454516_SNP [dm6]	C	T	1.577e^-4	0.924	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21163362	2L_21163362_SNP [dm3] 2L_21163362_SNP [dm6]	T	G	1.582e^-4	0.924	UPSTREAM CG9246 & 1 other DOWNSTREAM CR44910 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17507096	2L_17507096_SNP [dm3] 2L_17507096_SNP [dm6]	G	T	1.595e^-4	0.924	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
3R	10505796	3R_10505796_SNP [dm3] 3R_14680074_SNP [dm6]	T	G	1.601e^-4	0.924	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	11204810	3L_11204810_SNP [dm3] 3L_11211710_SNP [dm6]	G	A	1.603e^-4	0.924	SYNONYMOUS_CODING CG7600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15562137	X_15562137_SNP [dm3] X_15668104_SNP [dm6]	C	T	1.609e^-4	0.924	SYNONYMOUS_CODING CG15646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19611207	2L_19611207_DEL [dm3] 2L_19611207_DEL [dm6]	TAT	A	1.610e^-4	0.924	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
3L	6459175	3L_6459175_DEL [dm3] 3L_6466075_DEL [dm6]	GCTACCCTGTGTGTGCACCG...	G	1.620e^-4	0.924	INTRON CG42747
2R	8347828	2R_8347828_SNP [dm3] 2R_12460323_SNP [dm6]	T	C	1.624e^-4	0.924	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	4286945	X_4286945_SNP [dm3] X_4392912_SNP [dm6]	T	C	1.625e^-4	0.924	INTRON CR32773
X	21940341	X_21940341_SNP [dm3] X_22538505_SNP [dm6]	A	C	1.632e^-4	0.924	SYNONYMOUS_CODING CG17598 INTRON CG17600	TF binding site mE1_TFBS_chinmo
3R	24832164	3R_24832164_SNP [dm3] 3R_29006442_SNP [dm6]	C	A	1.633e^-4	0.924	INTRON wat
3R	5260745	3R_5260745_SNP [dm3] 3R_9435023_SNP [dm6]	T	G	1.642e^-4	0.924	INTRON ps	TF binding site mE1_TFBS_cad
3L	12689414	3L_12689414_SNP [dm3] 3L_12696314_SNP [dm6]	T	A	1.646e^-4	0.924	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21146222	2L_21146222_SNP [dm3] 2L_21146222_SNP [dm6]	A	G	1.653e^-4	0.924	NON_SYNONYMOUS_CODING del	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6444180	2R_6444180_SNP [dm3] 2R_10556675_SNP [dm6]	G	A	1.675e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5152734	2L_5152734_SNP [dm3] 2L_5152734_SNP [dm6]	T	C	1.676e^-4	0.924	INTRON Msp300
3R	10378520	3R_10378520_SNP [dm3] 3R_14552798_SNP [dm6]	T	C	1.700e^-4	0.924	INTRON Pde6
X	18156338	X_18156338_SNP [dm3] X_18262305_SNP [dm6]	A	C	1.712e^-4	0.924	INTERGENIC
3R	7199480	3R_7199480_SNP [dm3] 3R_11373758_SNP [dm6]	C	T	1.721e^-4	0.924	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	26189005	3R_26189005_SNP [dm3] 3R_30363283_SNP [dm6]	G	A	1.725e^-4	0.924	UTR_3_PRIME hdc
2R	15522419	2R_15522419_SNP [dm3] 2R_19634914_SNP [dm6]	G	T	1.736e^-4	0.924	UPSTREAM CG42753 DOWNSTREAM CR44503 INTERGENIC
2L	19611224	2L_19611224_SNP [dm3] 2L_19611224_SNP [dm6]	T	C	1.741e^-4	0.924	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
2L	22296085	2L_22296085_SNP [dm3] 2L_22296085_SNP [dm6]	C	A	1.743e^-4	0.924	INTERGENIC	transposable element FlyBase
2R	19237942	2R_19237942_SNP [dm3] 2R_23350419_SNP [dm6]	T	A	1.754e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19237948	2R_19237948_SNP [dm3] 2R_23350425_SNP [dm6]	C	A	1.754e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	22045819	X_22045819_SNP [dm3] X_22643983_SNP [dm6]	G	A	1.771e^-4	0.924	INTERGENIC
3L	1436883	3L_1436883_SNP [dm3] 3L_1436883_SNP [dm6]	T	A	1.771e^-4	0.924	SPLICE_SITE_REGION SA-2 INTRON Ptp61F & 1 other
2R	17295275	2R_17295275_SNP [dm3] 2R_21407770_SNP [dm6]	G	A	1.775e^-4	0.924	INTRON Sdc
2L	10166251	2L_10166251_SNP [dm3] 2L_10166251_SNP [dm6]	A	G	1.785e^-4	0.924	INTRON CG44153
2L	6248822	2L_6248822_SNP [dm3] 2L_6248822_SNP [dm6]	C	T	1.788e^-4	0.924	INTERGENIC
X	12374319	X_12374319_SNP [dm3] X_12480286_SNP [dm6]	C	T	1.793e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3366852	2L_3366852_SNP [dm3] 2L_3366852_SNP [dm6]	A	T	1.805e^-4	0.924	INTRON CG34394
2R	7528137	2R_7528137_SNP [dm3] 2R_11640632_SNP [dm6]	A	G	1.812e^-4	0.924	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2873368	3R_2873368_SNP [dm3] 3R_7047646_SNP [dm6]	G	C	1.817e^-4	0.924	INTERGENIC
X	10748253	X_10748253_SNP [dm3] X_10854220_SNP [dm6]	G	C	1.824e^-4	0.924	NON_SYNONYMOUS_CODING feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11669832	3L_11669832_SNP [dm3] 3L_11676732_SNP [dm6]	C	A	1.826e^-4	0.924	INTRON CG32085
3L	291473	3L_291473_SNP [dm3] 3L_291473_SNP [dm6]	G	A	1.833e^-4	0.924	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	266788	2R_266788_SNP [dm3] 2R_4379283_SNP [dm6]	G	C	1.836e^-4	0.924	INTRON Gprk1
3R	11417784	3R_11417784_SNP [dm3] 3R_15592062_SNP [dm6]	A	G	1.837e^-4	0.924	INTERGENIC
3L	24259262	3L_24259262_SNP [dm3] 3L_24266162_SNP [dm6]	A	C	1.840e^-4	0.924	INTRON Snap25
X	10136346	X_10136346_SNP [dm3] X_10242313_SNP [dm6]	C	A	1.843e^-4	0.924	INTRON Hk
2L	13264745	2L_13264745_SNP [dm3] 2L_13264745_SNP [dm6]	A	G	1.848e^-4	0.924	DOWNSTREAM CG31848 INTRON CG44085
2R	19944325	2R_19944325_SNP [dm3] 2R_24056802_SNP [dm6]	G	A	1.849e^-4	0.924	SYNONYMOUS_CODING CG13563 UPSTREAM eIF-5A INTRON ppk29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	19493132	3L_19493132_SNP [dm3] 3L_19500032_SNP [dm6]	C	G	1.849e^-4	0.924	DOWNSTREAM CG9452 INTRON CG9451
2R	9100928	2R_9100928_SNP [dm3] 2R_13213423_SNP [dm6]	A	G	1.858e^-4	0.924	SYNONYMOUS_CODING AQP
2L	22293921	2L_22293921_SNP [dm3] 2L_22293921_SNP [dm6]	G	A	1.863e^-4	0.924	INTERGENIC
2R	17297686	2R_17297686_SNP [dm3] 2R_21410181_SNP [dm6]	C	A	1.867e^-4	0.924	INTRON Sdc
3R	8033503	3R_8033503_SNP [dm3] 3R_12207781_SNP [dm6]	G	A	1.869e^-4	0.924	DOWNSTREAM CG4830 INTERGENIC
2R	15032000	2R_15032000_SNP [dm3] 2R_19144495_SNP [dm6]	C	G	1.871e^-4	0.924	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1236974	2R_1236974_SNP [dm3] 2R_5349469_SNP [dm6]	T	C	1.872e^-4	0.924	INTERGENIC	transposable element FlyBase
2R	18646998	2R_18646998_SNP [dm3] 2R_22759493_SNP [dm6]	A	G	1.874e^-4	0.924	DOWNSTREAM CR30267 INTRON CG42260
3R	7350633	3R_7350633_SNP [dm3] 3R_11524911_SNP [dm6]	G	T	1.882e^-4	0.924	INTERGENIC
X	17038643	X_17038643_SNP [dm3] X_17144610_SNP [dm6]	T	G	1.884e^-4	0.924	SPLICE_SITE_REGION RpS5a UPSTREAM snoRNA:Psi28S-1192d & 3 others DOWNSTREAM snoRNA:Psi28S-2876 & 3 others INTRON RpS5a	TF binding site mE1_TFBS_sens
3L	291769	3L_291769_SNP [dm3] 3L_291769_SNP [dm6]	G	A	1.886e^-4	0.924	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19945019	2R_19945019_SNP [dm3] 2R_24057496_SNP [dm6]	T	A	1.886e^-4	0.924	UTR_3_PRIME CG13563 UPSTREAM eIF-5A & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	13028906	X_13028906_SNP [dm3] X_13134873_SNP [dm6]	T	G	1.899e^-4	0.924	DOWNSTREAM MFS10 & 1 other INTERGENIC
2L	5762460	2L_5762460_SNP [dm3] 2L_5762460_SNP [dm6]	T	C	1.901e^-4	0.924	DOWNSTREAM obst-E & 1 other INTERGENIC
2L	11166013	2L_11166013_SNP [dm3] 2L_11166013_SNP [dm6]	C	A	1.901e^-4	0.924	INTRON Ca-beta
2R	17621787	2R_17621787_SNP [dm3] 2R_21734282_SNP [dm6]	G	A	1.928e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5708610	X_5708610_SNP [dm3] X_5814577_SNP [dm6]	G	A	1.930e^-4	0.924	DOWNSTREAM CG15766 INTERGENIC
3L	14227635	3L_14227635_SNP [dm3] 3L_14234535_SNP [dm6]	A	T	1.930e^-4	0.924	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
3L	5485967	3L_5485967_SNP [dm3] 3L_5492867_SNP [dm6]	G	C	1.933e^-4	0.924	DOWNSTREAM CR44520 INTERGENIC
2L	19611219	2L_19611219_SNP [dm3] 2L_19611219_SNP [dm6]	C	A	1.937e^-4	0.924	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
2L	7449136	2L_7449136_SNP [dm3] 2L_7449136_SNP [dm6]	G	T	1.937e^-4	0.924	UTR_5_PRIME santa-maria INTRON santa-maria
X	9143223	X_9143223_SNP [dm3] X_9249190_SNP [dm6]	C	T	1.938e^-4	0.924	INTRON Dsor1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	1.945e^-4	0.924	INTRON Hmgcr
X	22045879	X_22045879_INS [dm3] X_22644043_INS [dm6]	G	GAATTGTGGGGAA...	1.949e^-4	0.924	INTERGENIC
3L	6800561	3L_6800561_SNP [dm3] 3L_6807461_SNP [dm6]	G	A	1.950e^-4	0.924	INTERGENIC
3L	4103169	3L_4103169_SNP [dm3] 3L_4103169_SNP [dm6]	A	G	1.951e^-4	0.924	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5762463	2L_5762463_SNP [dm3] 2L_5762463_SNP [dm6]	C	A	1.953e^-4	0.924	DOWNSTREAM obst-E & 1 other INTERGENIC
X	12270130	X_12270130_SNP [dm3] X_12376097_SNP [dm6]	G	C	1.986e^-4	0.924	SYNONYMOUS_CODING Ir11a	TF binding site mE1_TFBS_chinmo
3L	9560080	3L_9560080_SNP [dm3] 3L_9566980_SNP [dm6]	T	C	1.993e^-4	0.924	INTRON CG42673
X	6401024	X_6401024_SNP [dm3] X_6506991_SNP [dm6]	G	A	1.994e^-4	0.924	INTRON CG42340
3L	11307479	3L_11307479_DEL [dm3] 3L_11314379_DEL [dm6]	AA	A	1.995e^-4	0.924	UPSTREAM CR44361 DOWNSTREAM CG7573 INTERGENIC
3R	26493836	3R_26493836_SNP [dm3] 3R_30668114_SNP [dm6]	G	T	1.998e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	17609512	2L_17609512_SNP [dm3] 2L_17609512_SNP [dm6]	A	G	2.005e^-4	0.924	INTERGENIC
X	4465767	X_4465767_SNP [dm3] X_4571734_SNP [dm6]	G	C	2.007e^-4	0.924	NON_SYNONYMOUS_CODING CG12684 INTRON CR32773
3L	2951663	3L_2951663_SNP [dm3] 3L_2951663_SNP [dm6]	C	A	2.015e^-4	0.924	UPSTREAM CG32846 INTRON Shab
2L	3321375	2L_3321375_SNP [dm3] 2L_3321375_SNP [dm6]	C	A	2.021e^-4	0.924	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13426616	3R_13426616_SNP [dm3] 3R_17600894_SNP [dm6]	T	G	2.022e^-4	0.924	INTERGENIC
2R	17748452	2R_17748452_SNP [dm3] 2R_21860947_SNP [dm6]	T	A	2.023e^-4	0.924	NON_SYNONYMOUS_CODING CG9294	TF binding site mE1_TFBS_HSA
2L	16419823	2L_16419823_SNP [dm3] 2L_16419823_SNP [dm6]	A	C	2.030e^-4	0.924	INTRON CG5888
3R	16278540	3R_16278540_SNP [dm3] 3R_20452818_SNP [dm6]	G	A	2.031e^-4	0.924	INTRON Gfrl
3L	15198134	3L_15198134_SNP [dm3] 3L_15205034_SNP [dm6]	T	A	2.032e^-4	0.924	INTERGENIC
X	9661448	X_9661448_SNP [dm3] X_9767415_SNP [dm6]	C	T	2.036e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18156268	X_18156268_SNP [dm3] X_18262235_SNP [dm6]	C	G	2.046e^-4	0.924	INTERGENIC
3L	8879169	3L_8879169_SNP [dm3] 3L_8886069_SNP [dm6]	A	C	2.055e^-4	0.924	INTRON dally
X	8378848	X_8378848_SNP [dm3] X_8484815_SNP [dm6]	C	T	2.069e^-4	0.924	UPSTREAM CG33223 DOWNSTREAM otu & 1 other INTERGENIC
2L	17507099	2L_17507099_SNP [dm3] 2L_17507099_SNP [dm6]	T	C	2.081e^-4	0.924	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2R	6333423	2R_6333423_INS [dm3] 2R_10445918_INS [dm6]	T	TC	2.089e^-4	0.924	INTRON Galphao
3R	25434107	3R_25434107_SNP [dm3] 3R_29608385_SNP [dm6]	A	C	2.093e^-4	0.924	UPSTREAM Diedel2 INTRON alph
2R	17263246	2R_17263246_SNP [dm3] 2R_21375741_SNP [dm6]	G	A	2.095e^-4	0.924	INTRON cv-2
3R	16257213	3R_16257213_SNP [dm3] 3R_20431491_SNP [dm6]	G	A	2.096e^-4	0.924	INTRON Gfrl
2R	317811	2R_317811_SNP [dm3] 2R_4430306_SNP [dm6]	C	A	2.097e^-4	0.924	INTRON Gprk1	TF binding site mE1_TFBS_cad
3R	17034679	3R_17034679_SNP [dm3] 3R_21208957_SNP [dm6]	C	T	2.099e^-4	0.924	INTRON SNF4Agamma
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	2.104e^-4	0.924	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	10482304	2R_10482304_SNP [dm3] 2R_14594799_SNP [dm6]	T	A	2.125e^-4	0.924	NON_SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2L	4443508	2L_4443508_SNP [dm3] 2L_4443508_SNP [dm6]	G	C	2.128e^-4	0.924	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	4437585	3R_4437585_SNP [dm3] 3R_8611863_SNP [dm6]	T	G	2.135e^-4	0.924	INTRON 5-HT2B
2L	13395314	2L_13395314_SNP [dm3] 2L_13395314_SNP [dm6]	C	T	2.149e^-4	0.924	UPSTREAM RpL24 DOWNSTREAM CG16957 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20899011	2L_20899011_DEL [dm3] 2L_20899011_DEL [dm6]	AGTAT	A	2.155e^-4	0.924	INTRON sky & 1 other
3L	12689420	3L_12689420_SNP [dm3] 3L_12696320_SNP [dm6]	G	A	2.159e^-4	0.924	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14679653	2R_14679653_SNP [dm3] 2R_18792148_SNP [dm6]	C	T	2.168e^-4	0.924	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	15677943	2R_15677943_SNP [dm3] 2R_19790438_SNP [dm6]	C	A	2.184e^-4	0.924	DOWNSTREAM CR45231 INTERGENIC
2L	2680542	2L_2680542_SNP [dm3] 2L_2680542_SNP [dm6]	G	C	2.202e^-4	0.924	INTRON CG31690
2R	19345871	2R_19345871_SNP [dm3] 2R_23458348_SNP [dm6]	A	T	2.205e^-4	0.924	NON_SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	22240261	3R_22240261_SNP [dm3] 3R_26414539_SNP [dm6]	A	C	2.208e^-4	0.924	SYNONYMOUS_CODING CG5432
3R	24635206	3R_24635206_SNP [dm3] 3R_28809484_SNP [dm6]	G	T	2.209e^-4	0.924	SYNONYMOUS_CODING wdn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3693627	2L_3693627_SNP [dm3] 2L_3693627_SNP [dm6]	G	A	2.222e^-4	0.924	SYNONYMOUS_CODING Acp24A4 UPSTREAM CG3513 DOWNSTREAM CR43364 & 1 other
2R	11317915	2R_11317915_SNP [dm3] 2R_15430410_SNP [dm6]	C	T	2.224e^-4	0.924	INTRON CG43729
X	4289333	X_4289333_SNP [dm3] X_4395300_SNP [dm6]	A	G	2.230e^-4	0.924	INTRON CR32773
3R	11464539	3R_11464539_SNP [dm3] 3R_15638817_SNP [dm6]	C	A	2.233e^-4	0.924	DOWNSTREAM CG43336 INTERGENIC
2L	5770202	2L_5770202_SNP [dm3] 2L_5770202_SNP [dm6]	C	A	2.234e^-4	0.924	SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13592308	3R_13592308_SNP [dm3] 3R_17766586_SNP [dm6]	G	T	2.245e^-4	0.924	INTERGENIC
2L	7766874	2L_7766874_SNP [dm3] 2L_7766874_SNP [dm6]	C	T	2.249e^-4	0.924	UPSTREAM CG7191 DOWNSTREAM CG7196 INTERGENIC
3R	24635278	3R_24635278_SNP [dm3] 3R_28809556_SNP [dm6]	T	C	2.251e^-4	0.924	SYNONYMOUS_CODING wdn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5395700	2L_5395700_SNP [dm3] 2L_5395700_SNP [dm6]	T	C	2.256e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17365371	2R_17365371_SNP [dm3] 2R_21477866_SNP [dm6]	T	A	2.261e^-4	0.924	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4860909	3L_4860909_SNP [dm3] 3L_4860909_SNP [dm6]	C	G	2.261e^-4	0.924	UPSTREAM CG17150 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	17676082	3R_17676082_SNP [dm3] 3R_21850360_SNP [dm6]	T	C	2.267e^-4	0.924	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16257232	3R_16257232_SNP [dm3] 3R_20431510_SNP [dm6]	A	C	2.278e^-4	0.924	INTRON Gfrl
3R	19949180	3R_19949180_SNP [dm3] 3R_24123458_SNP [dm6]	C	A	2.278e^-4	0.924	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2R	14392867	2R_14392867_SNP [dm3] 2R_18505362_SNP [dm6]	T	C	2.283e^-4	0.924	DOWNSTREAM GstE11 INTERGENIC
2R	19164508	2R_19164508_SNP [dm3] 2R_23276985_SNP [dm6]	A	G	2.291e^-4	0.924	INTERGENIC
2L	3996157	2L_3996157_SNP [dm3] 2L_3996157_SNP [dm6]	C	T	2.293e^-4	0.924	INTERGENIC
2R	16986639	2R_16986639_SNP [dm3] 2R_21099134_SNP [dm6]	A	G	2.295e^-4	0.924	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo
3L	2164362	3L_2164362_SNP [dm3] 3L_2164362_SNP [dm6]	A	C	2.296e^-4	0.924	UPSTREAM CG15822 INTERGENIC
3R	12149259	3R_12149259_SNP [dm3] 3R_16323537_SNP [dm6]	T	G	2.304e^-4	0.924	SYNONYMOUS_CODING CG6901 INTRON Sulf1
3L	10029666	3L_10029666_SNP [dm3] 3L_10036566_SNP [dm6]	C	T	2.306e^-4	0.924	INTRON dpr6
2L	16258113	2L_16258113_SNP [dm3] 2L_16258113_SNP [dm6]	A	C	2.313e^-4	0.924	UTR_5_PRIME EndoGI UPSTREAM PRL-1	TF binding site BDTNP1_TFBS_dl
2L	14165248	2L_14165248_SNP [dm3] 2L_14165248_SNP [dm6]	G	T	2.314e^-4	0.924	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
2L	4296060	2L_4296060_SNP [dm3] 2L_4296060_SNP [dm6]	C	T	2.323e^-4	0.924	INTRON tutl	TF binding site mE1_TFBS_chinmo
X	19058493	X_19058493_SNP [dm3] X_19164460_SNP [dm6]	G	T	2.323e^-4	0.924	SYNONYMOUS_CODING RhoGAP18B
2R	6444798	2R_6444798_SNP [dm3] 2R_10557293_SNP [dm6]	T	A	2.334e^-4	0.924	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19351111	2R_19351111_SNP [dm3] 2R_23463588_SNP [dm6]	A	G	2.341e^-4	0.924	INTRON CG43795
2R	1218471	2R_1218471_SNP [dm3] 2R_5330966_SNP [dm6]	A	G	2.345e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10413821	X_10413821_SNP [dm3] X_10519788_SNP [dm6]	A	T	2.360e^-4	0.924	INTRON spri
X	4419906	X_4419906_SNP [dm3] X_4525873_SNP [dm6]	A	G	2.367e^-4	0.924	INTRON CR32773
2L	22294001	2L_22294001_SNP [dm3] 2L_22294001_SNP [dm6]	G	T	2.376e^-4	0.924	INTERGENIC
2R	19385141	2R_19385141_SNP [dm3] 2R_23497618_SNP [dm6]	T	C	2.382e^-4	0.924	INTERGENIC
2L	9183797	2L_9183797_SNP [dm3] 2L_9183797_SNP [dm6]	T	C	2.398e^-4	0.924	INTRON tai	TF binding site mE1_TFBS_HSA
3R	24793820	3R_24793820_SNP [dm3] 3R_28968098_SNP [dm6]	T	C	2.403e^-4	0.924	INTRON CG14521
3L	9481159	3L_9481159_SNP [dm3] 3L_9488059_SNP [dm6]	A	C	2.421e^-4	0.924	UTR_3_PRIME CG32036 UPSTREAM pall	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
X	3603279	X_3603279_SNP [dm3] X_3709246_SNP [dm6]	A	C	2.430e^-4	0.924	INTRON Rala
X	19450120	X_19450120_SNP [dm3] X_19556087_SNP [dm6]	C	T	2.438e^-4	0.924	UPSTREAM mir-2499 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8828290	3L_8828290_SNP [dm3] 3L_8835190_SNP [dm6]	C	A	2.439e^-4	0.924	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6836372	3L_6836372_SNP [dm3] 3L_6843272_SNP [dm6]	A	T	2.439e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9100931	2R_9100931_SNP [dm3] 2R_13213426_SNP [dm6]	G	A	2.443e^-4	0.924	SYNONYMOUS_CODING AQP
3L	1727817	3L_1727817_INS [dm3] 3L_1727817_INS [dm6]	T	TGCTGCAAT	2.445e^-4	0.924	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	17804076	3R_17804076_SNP [dm3] 3R_21978354_SNP [dm6]	C	T	2.449e^-4	0.924	INTRON Eip93F
X	13715064	X_13715064_SNP [dm3] X_13821031_SNP [dm6]	T	C	2.456e^-4	0.924	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17676100	3R_17676100_SNP [dm3] 3R_21850378_SNP [dm6]	G	T	2.461e^-4	0.924	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1922546	2L_1922546_INS [dm3] 2L_1922546_INS [dm6]	T	TTTTTTTTTTTTTTTTATAT...	2.471e^-4	0.924	INTRON CG7337
2L	21157970	2L_21157970_SNP [dm3] 2L_21157970_SNP [dm6]	C	T	2.477e^-4	0.924	SYNONYMOUS_CODING CG9249 UPSTREAM CG9248 DOWNSTREAM Mpp6	TF binding site mE1_TFBS_sens
X	5218149	X_5218149_SNP [dm3] X_5324116_SNP [dm6]	G	A	2.480e^-4	0.924	SYNONYMOUS_CODING Mcm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	22194858	X_22194858_SNP [dm3] X_22793022_SNP [dm6]	A	C	2.483e^-4	0.924	INTRON CR44997
2L	6191155	2L_6191155_SNP [dm3] 2L_6191155_SNP [dm6]	T	G	2.492e^-4	0.924	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17759617	2R_17759617_SNP [dm3] 2R_21872112_SNP [dm6]	C	A	2.496e^-4	0.924	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2674285	2L_2674285_DEL [dm3] 2L_2674285_DEL [dm6]	GATTCGGGCCATGGAAAAA...	G	2.497e^-4	0.924	INTERGENIC
2L	3407029	2L_3407029_SNP [dm3] 2L_3407029_SNP [dm6]	A	G	2.498e^-4	0.924	SYNONYMOUS_CODING pgant2
2R	16637192	2R_16637192_SNP [dm3] 2R_20749687_SNP [dm6]	A	C	2.511e^-4	0.924	UTR_3_PRIME dpr
3R	27065988	3R_27065988_SNP [dm3] 3R_31240266_SNP [dm6]	A	G	2.513e^-4	0.924	INTRON qless
X	10273790	X_10273790_SNP [dm3] X_10379757_SNP [dm6]	G	A	2.516e^-4	0.924	SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	10727152	3R_10727152_SNP [dm3] 3R_14901430_SNP [dm6]	A	C	2.522e^-4	0.924	SYNONYMOUS_CODING RpS5b DOWNSTREAM VhaPPA1-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12407446	X_12407446_SNP [dm3] X_12513413_SNP [dm6]	G	A	2.539e^-4	0.924	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	2.542e^-4	0.924	INTERGENIC
2L	10923958	2L_10923958_SNP [dm3] 2L_10923958_SNP [dm6]	T	G	2.545e^-4	0.924	INTRON dpr2
3L	4476488	3L_4476488_SNP [dm3] 3L_4476488_SNP [dm6]	G	T	2.545e^-4	0.924	INTERGENIC
X	14878892	X_14878892_SNP [dm3] X_14984859_SNP [dm6]	G	C	2.551e^-4	0.924	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8875122	3L_8875122_SNP [dm3] 3L_8882022_SNP [dm6]	A	T	2.551e^-4	0.924	INTRON dally
3R	17624423	3R_17624423_SNP [dm3] 3R_21798701_SNP [dm6]	T	C	2.565e^-4	0.924	UPSTREAM mir-999 & 1 other INTRON CASK
2L	2684255	2L_2684255_SNP [dm3] 2L_2684255_SNP [dm6]	G	A	2.570e^-4	0.924	INTRON CG31690
X	15357562	X_15357562_SNP [dm3] X_15463529_SNP [dm6]	G	C	2.583e^-4	0.924	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8407002	3L_8407002_SNP [dm3] 3L_8413902_SNP [dm6]	A	T	2.586e^-4	0.924	UTR_3_PRIME mtrm INTRON Exo70
3L	17713450	3L_17713450_SNP [dm3] 3L_17720350_SNP [dm6]	G	T	2.604e^-4	0.924	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	18600114	3R_18600114_SNP [dm3] 3R_22774392_SNP [dm6]	A	C	2.608e^-4	0.924	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
2L	4452205	2L_4452205_SNP [dm3] 2L_4452205_SNP [dm6]	A	C	2.614e^-4	0.924	SYNONYMOUS_CODING CG15439 DOWNSTREAM CG15440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14704989	3R_14704989_SNP [dm3] 3R_18879267_SNP [dm6]	C	G	2.616e^-4	0.924	INTERGENIC
2R	17749178	2R_17749178_SNP [dm3] 2R_21861673_SNP [dm6]	C	G	2.618e^-4	0.924	SYNONYMOUS_CODING CG9294
X	17685994	X_17685994_SNP [dm3] X_17791961_SNP [dm6]	A	G	2.623e^-4	0.924	INTRON OdsH
3L	9716420	3L_9716420_INS [dm3] 3L_9723320_INS [dm6]	G	TTA	2.628e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3326075	3L_3326075_SNP [dm3] 3L_3326075_SNP [dm6]	T	C	2.631e^-4	0.924	UPSTREAM PHGPx & 1 other INTRON CG11526	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17755461	2L_17755461_SNP [dm3] 2L_17755461_SNP [dm6]	G	A	2.637e^-4	0.924	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19747559	3R_19747559_SNP [dm3] 3R_23921837_SNP [dm6]	C	T	2.637e^-4	0.924	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18645692	2R_18645692_SNP [dm3] 2R_22758187_SNP [dm6]	C	T	2.648e^-4	0.924	SYNONYMOUS_CODING CG42260 EXON CR30267
3L	3772410	3L_3772410_SNP [dm3] 3L_3772410_SNP [dm6]	C	T	2.651e^-4	0.924	INTRON CG32264
2L	1317087	2L_1317087_SNP [dm3] 2L_1317087_SNP [dm6]	G	A	2.665e^-4	0.924	INTERGENIC
2L	10137182	2L_10137182_SNP [dm3] 2L_10137182_SNP [dm6]	A	G	2.667e^-4	0.924	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad
3R	9901948	3R_9901948_SNP [dm3] 3R_14076226_SNP [dm6]	C	A	2.670e^-4	0.924	INTRON foxo
X	12273737	X_12273737_SNP [dm3] X_12379704_SNP [dm6]	G	A	2.674e^-4	0.924	INTERGENIC
3R	990716	3R_990716_SNP [dm3] 3R_5164994_SNP [dm6]	A	T	2.685e^-4	0.924	UPSTREAM dpr16 INTRON dpr16
3L	9716433	3L_9716433_SNP [dm3] 3L_9723333_SNP [dm6]	A	T	2.694e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5898393	3L_5898393_SNP [dm3] 3L_5905293_SNP [dm6]	G	A	2.700e^-4	0.924	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
2L	3410880	2L_3410880_SNP [dm3] 2L_3410880_SNP [dm6]	A	G	2.701e^-4	0.924	NON_SYNONYMOUS_CODING CG8840 INTRON pgant2
3R	3466761	3R_3466761_SNP [dm3] 3R_7641039_SNP [dm6]	A	G	2.703e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1315330	2L_1315330_SNP [dm3] 2L_1315330_SNP [dm6]	T	C	2.705e^-4	0.924	INTERGENIC
2L	12469343	2L_12469343_SNP [dm3] 2L_12469343_SNP [dm6]	A	C	2.711e^-4	0.924	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21123359	2L_21123359_SNP [dm3] 2L_21123359_SNP [dm6]	G	C	2.716e^-4	0.924	INTRON Nhe2
2L	22293837	2L_22293837_SNP [dm3] 2L_22293837_SNP [dm6]	C	A	2.741e^-4	0.924	INTERGENIC
3R	20602999	3R_20602999_SNP [dm3] 3R_24777277_SNP [dm6]	T	A	2.747e^-4	0.924	INTRON CG42331
3L	18098318	3L_18098318_SNP [dm3] 3L_18105218_SNP [dm6]	A	G	2.754e^-4	0.924	INTRON CG13698	TF binding site BDTNP1_TFBS_dl
3L	7284177	3L_7284177_SNP [dm3] 3L_7291077_SNP [dm6]	T	A	2.759e^-4	0.924	INTRON unc-13-4A
3R	11848762	3R_11848762_MNP [dm3] 3R_16023040_MNP [dm6]	AAT	TGA	2.771e^-4	0.924	INTERGENIC
2L	9771197	2L_9771197_SNP [dm3] 2L_9771197_SNP [dm6]	A	G	2.771e^-4	0.924	SYNONYMOUS_CODING ppk16 UPSTREAM ppk18 DOWNSTREAM CG17633
2R	19954851	2R_19954851_SNP [dm3] 2R_24067328_SNP [dm6]	A	G	2.772e^-4	0.924	INTRON yki
3R	1009835	3R_1009835_DEL [dm3] 3R_5184113_DEL [dm6]	CAAATACT	C	2.774e^-4	0.924	INTRON cno	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9776370	2R_9776370_SNP [dm3] 2R_13888865_SNP [dm6]	A	T	2.776e^-4	0.924	SYNONYMOUS_CODING shot INTRON shot
2L	21156739	2L_21156739_SNP [dm3] 2L_21156739_SNP [dm6]	A	G	2.787e^-4	0.924	UTR_5_PRIME E2f2 & 1 other UPSTREAM Mpp6 & 1 other DOWNSTREAM CG9249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	6237518	2L_6237518_INS [dm3] 2L_6237518_INS [dm6]	T	TATGT	2.793e^-4	0.924	INTERGENIC
X	10488697	X_10488697_SNP [dm3] X_10594664_SNP [dm6]	T	C	2.796e^-4	0.924	NON_SYNONYMOUS_CODING Hmr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6248476	2L_6248476_SNP [dm3] 2L_6248476_SNP [dm6]	C	T	2.801e^-4	0.924	INTERGENIC
X	18777195	X_18777195_SNP [dm3] X_18883162_SNP [dm6]	T	G	2.803e^-4	0.924	UTR_3_PRIME CG34401
3R	1027486	3R_1027486_DEL [dm3] 3R_5201764_DEL [dm6]	TT	T	2.805e^-4	0.924	INTRON cno
2L	6936501	2L_6936501_SNP [dm3] 2L_6936501_SNP [dm6]	C	T	2.811e^-4	0.924	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17370625	3L_17370625_SNP [dm3] 3L_17377525_SNP [dm6]	T	A	2.812e^-4	0.924	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10507489	3R_10507489_SNP [dm3] 3R_14681767_SNP [dm6]	G	A	2.813e^-4	0.924	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10025283	3L_10025283_SNP [dm3] 3L_10032183_SNP [dm6]	T	C	2.816e^-4	0.924	INTRON dpr6
3R	1026170	3R_1026170_SNP [dm3] 3R_5200448_SNP [dm6]	A	T	2.817e^-4	0.924	INTRON cno	TF binding site mE1_TFBS_HSA
X	16064029	X_16064029_SNP [dm3] X_16169996_SNP [dm6]	G	A	2.822e^-4	0.924	INTERGENIC
3R	8566976	3R_8566976_SNP [dm3] 3R_12741254_SNP [dm6]	C	T	2.825e^-4	0.924	SYNONYMOUS_CODING CG5724 DOWNSTREAM CG5999
2L	9327493	2L_9327493_SNP [dm3] 2L_9327493_SNP [dm6]	A	G	2.833e^-4	0.924	UPSTREAM CG17005 DOWNSTREAM CR45456 EXON CR45457
2R	8951312	2R_8951312_SNP [dm3] 2R_13063807_SNP [dm6]	T	A	2.837e^-4	0.924	INTRON Drl-2
2L	21111347	2L_21111347_SNP [dm3] 2L_21111347_SNP [dm6]	T	C	2.840e^-4	0.924	INTRON Nhe2
3L	16865794	3L_16865794_SNP [dm3] 3L_16872694_SNP [dm6]	T	C	2.851e^-4	0.924	INTRON Lmpt
2R	15297212	2R_15297212_SNP [dm3] 2R_19409707_SNP [dm6]	A	G	2.854e^-4	0.924	SYNONYMOUS_CODING hts
3R	14885445	3R_14885445_SNP [dm3] 3R_19059723_SNP [dm6]	A	C	2.865e^-4	0.924	INTRON cdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	3360707	2L_3360707_SNP [dm3] 2L_3360707_SNP [dm6]	T	A	2.868e^-4	0.924	UTR_3_PRIME CG34394
3R	24635158	3R_24635158_SNP [dm3] 3R_28809436_SNP [dm6]	C	A	2.875e^-4	0.924	SYNONYMOUS_CODING wdn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16993136	2R_16993136_SNP [dm3] 2R_21105631_SNP [dm6]	T	A	2.876e^-4	0.924	INTRON ktub	TF binding site mE1_TFBS_inv
2L	6813634	2L_6813634_SNP [dm3] 2L_6813634_SNP [dm6]	C	T	2.880e^-4	0.924	DOWNSTREAM CR44081 INTERGENIC
2R	8976354	2R_8976354_SNP [dm3] 2R_13088849_SNP [dm6]	C	T	2.891e^-4	0.924	INTERGENIC
2R	20358100	2R_20358100_SNP [dm3] 2R_24470577_SNP [dm6]	T	C	2.897e^-4	0.924	INTRON CG13579
3R	21590443	3R_21590443_DEL [dm3] 3R_25764721_DEL [dm6]	TT	C	2.900e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
2R	315009	2R_315009_SNP [dm3] 2R_4427504_SNP [dm6]	C	A	2.902e^-4	0.924	INTRON Gprk1
3L	11115867	3L_11115867_SNP [dm3] 3L_11122767_SNP [dm6]	C	A	2.905e^-4	0.924	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	10704291	2R_10704291_SNP [dm3] 2R_14816786_SNP [dm6]	C	T	2.906e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12844855	3L_12844855_SNP [dm3] 3L_12851755_SNP [dm6]	T	C	2.912e^-4	0.924	INTRON Wbp2
2L	4236581	2L_4236581_SNP [dm3] 2L_4236581_SNP [dm6]	C	G	2.924e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8612471	3R_8612471_SNP [dm3] 3R_12786749_SNP [dm6]	T	C	2.928e^-4	0.924	INTERGENIC
3R	12232142	3R_12232142_SNP [dm3] 3R_16406420_SNP [dm6]	G	A	2.938e^-4	0.924	UPSTREAM CR45630 INTERGENIC
X	14666604	X_14666604_SNP [dm3] X_14772571_SNP [dm6]	T	A	2.941e^-4	0.924	INTERGENIC
2R	17303668	2R_17303668_SNP [dm3] 2R_21416163_SNP [dm6]	G	C	2.942e^-4	0.924	INTRON Sdc
X	3901693	X_3901693_SNP [dm3] X_4007660_SNP [dm6]	G	T	2.950e^-4	0.924	INTERGENIC
3R	26649822	3R_26649822_SNP [dm3] 3R_30824100_SNP [dm6]	A	T	2.953e^-4	0.924	INTRON cindr	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
X	12239998	X_12239998_INS [dm3] X_12345965_INS [dm6]	A	AC	2.955e^-4	0.924	INTERGENIC
3L	5927515	3L_5927515_SNP [dm3] 3L_5934415_SNP [dm6]	C	T	2.966e^-4	0.924	SYNONYMOUS_CODING CG33993
2R	12474924	2R_12474924_SNP [dm3] 2R_16587419_SNP [dm6]	T	C	2.969e^-4	0.924	NON_SYNONYMOUS_CODING CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	774927	2L_774927_SNP [dm3] 2L_774927_SNP [dm6]	A	T	2.976e^-4	0.924	DOWNSTREAM CG12506 INTERGENIC
2L	947449	2L_947449_SNP [dm3] 2L_947449_SNP [dm6]	C	T	2.977e^-4	0.924	INTRON CG4341
X	15357126	X_15357126_SNP [dm3] X_15463093_SNP [dm6]	C	T	2.977e^-4	0.924	NON_SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14690749	2R_14690749_SNP [dm3] 2R_18803244_SNP [dm6]	C	T	2.978e^-4	0.924	UTR_5_PRIME l_2_08717 UPSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	5927321	3L_5927321_SNP [dm3] 3L_5934221_SNP [dm6]	T	G	2.982e^-4	0.924	SYNONYMOUS_CODING CG33993
3R	4355005	3R_4355005_SNP [dm3] 3R_8529283_SNP [dm6]	A	T	2.984e^-4	0.924	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25114380	3R_25114380_SNP [dm3] 3R_29288658_SNP [dm6]	T	G	2.991e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15204236	2L_15204236_SNP [dm3] 2L_15204236_SNP [dm6]	A	C	2.991e^-4	0.924	DOWNSTREAM CR43357 INTERGENIC
X	10413826	X_10413826_SNP [dm3] X_10519793_SNP [dm6]	G	A	3.002e^-4	0.924	INTRON spri
3R	7058762	3R_7058762_SNP [dm3] 3R_11233040_SNP [dm6]	A	T	3.003e^-4	0.924	UTR_3_PRIME Arfip DOWNSTREAM CG14701	TF binding site mE1_TFBS_cad
2R	14565371	2R_14565371_SNP [dm3] 2R_18677866_SNP [dm6]	G	C	3.029e^-4	0.924	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	2951858	3L_2951858_SNP [dm3] 3L_2951858_SNP [dm6]	T	A	3.033e^-4	0.924	UPSTREAM CG32846 INTRON Shab
3L	9716422	3L_9716422_SNP [dm3] 3L_9723322_SNP [dm6]	C	T	3.036e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7058875	3R_7058875_SNP [dm3] 3R_11233153_SNP [dm6]	A	G	3.036e^-4	0.924	DOWNSTREAM CG14701 INTRON Arfip	TF binding site mE1_TFBS_cad
3L	14226018	3L_14226018_SNP [dm3] 3L_14232918_SNP [dm6]	C	A	3.043e^-4	0.924	UTR_3_PRIME nuf UPSTREAM CG7924 DOWNSTREAM nuf
3R	19049009	3R_19049009_SNP [dm3] 3R_23223287_SNP [dm6]	G	T	3.043e^-4	0.924	INTRON cnc
3R	22782838	3R_22782838_INS [dm3] 3R_26957116_INS [dm6]	T	TGAGCTTTT	3.047e^-4	0.924	INTRON CG6330	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10976805	3L_10976805_SNP [dm3] 3L_10983705_SNP [dm6]	A	G	3.047e^-4	0.924	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18436057	2R_18436057_SNP [dm3] 2R_22548552_SNP [dm6]	A	G	3.053e^-4	0.924	INTRON px
3R	18448714	3R_18448714_INS [dm3] 3R_22622992_INS [dm6]	T	TT	3.053e^-4	0.924	INTRON loco	TF binding site mE1_TFBS_cad
X	14206161	X_14206161_SNP [dm3] X_14312128_SNP [dm6]	T	G	3.057e^-4	0.924	INTERGENIC
3L	5899628	3L_5899628_SNP [dm3] 3L_5906528_SNP [dm6]	C	T	3.063e^-4	0.924	SYNONYMOUS_CODING CG10486 UPSTREAM CG13288	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26069767	3R_26069767_SNP [dm3] 3R_30244045_SNP [dm6]	T	C	3.065e^-4	0.924	UTR_3_PRIME CG9733 UPSTREAM CG9737
2L	3109018	2L_3109018_SNP [dm3] 2L_3109018_SNP [dm6]	G	A	3.065e^-4	0.924	UPSTREAM toc & 1 other INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1010859	3R_1010859_SNP [dm3] 3R_5185137_SNP [dm6]	A	T	3.072e^-4	0.924	INTRON cno
2R	1220182	2R_1220182_SNP [dm3] 2R_5332677_SNP [dm6]	C	T	3.072e^-4	0.924	INTERGENIC
2L	20229735	2L_20229735_SNP [dm3] 2L_20229735_SNP [dm6]	A	T	3.077e^-4	0.924	INTERGENIC
2L	7137238	2L_7137238_SNP [dm3] 2L_7137238_SNP [dm6]	G	A	3.079e^-4	0.924	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17038454	X_17038454_SNP [dm3] X_17144421_SNP [dm6]	G	T	3.080e^-4	0.924	UPSTREAM snoRNA:Psi28S-1192d & 2 others DOWNSTREAM snoRNA:Psi28S-1192a & 3 others INTRON RpS5a	TF binding site mE1_TFBS_sens
2L	1777651	2L_1777651_SNP [dm3] 2L_1777651_SNP [dm6]	A	G	3.080e^-4	0.924	INTERGENIC
3R	18423025	3R_18423025_DEL [dm3] 3R_22597303_DEL [dm6]	AGTAGA	A	3.086e^-4	0.924	INTRON Efa6	TF binding site mE1_TFBS_HSA
3L	1436874	3L_1436874_SNP [dm3] 3L_1436874_SNP [dm6]	A	G	3.092e^-4	0.924	SPLICE_SITE_REGION SA-2 SYNONYMOUS_CODING SA-2 INTRON Ptp61F
2R	13834713	2R_13834713_DEL [dm3] 2R_17947208_DEL [dm6]	GGGCGG	G	3.092e^-4	0.924	INTERGENIC
2R	9245008	2R_9245008_INS [dm3] 2R_13357503_INS [dm6]	A	AT	3.096e^-4	0.924	INTERGENIC
X	12239999	X_12239999_DEL [dm3] X_12345966_DEL [dm6]	ATAT	A	3.098e^-4	0.924	INTERGENIC
X	8378678	X_8378678_SNP [dm3] X_8484645_SNP [dm6]	T	A	3.101e^-4	0.924	UPSTREAM CG33223 DOWNSTREAM otu & 1 other INTERGENIC
3R	10506184	3R_10506184_SNP [dm3] 3R_14680462_SNP [dm6]	C	A	3.104e^-4	0.924	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5302770	3L_5302770_SNP [dm3] 3L_5309670_SNP [dm6]	G	A	3.114e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20909033	X_20909033_SNP [dm3] X_21038006_SNP [dm6]	T	C	3.115e^-4	0.924	INTRON Ntf-2
3R	26120764	3R_26120764_SNP [dm3] 3R_30295042_SNP [dm6]	T	C	3.118e^-4	0.924	INTRON hdc
2L	8120931	2L_8120931_SNP [dm3] 2L_8120931_SNP [dm6]	G	T	3.124e^-4	0.924	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8840049	3L_8840049_SNP [dm3] 3L_8846949_SNP [dm6]	G	A	3.131e^-4	0.924	INTRON dally
3R	16257217	3R_16257217_DEL [dm3] 3R_20431495_DEL [dm6]	TGTAATTGGAT...	A	3.135e^-4	0.924	INTRON Gfrl
X	17038465	X_17038465_SNP [dm3] X_17144432_SNP [dm6]	T	C	3.137e^-4	0.924	UPSTREAM snoRNA:Psi28S-1192d & 2 others DOWNSTREAM snoRNA:Psi28S-1192a & 3 others INTRON RpS5a	TF binding site mE1_TFBS_sens
3L	12897737	3L_12897737_SNP [dm3] 3L_12904637_SNP [dm6]	T	C	3.143e^-4	0.924	UPSTREAM CG32117 INTERGENIC
2L	21118004	2L_21118004_SNP [dm3] 2L_21118004_SNP [dm6]	C	T	3.144e^-4	0.924	SYNONYMOUS_CODING Nhe2
X	12407422	X_12407422_SNP [dm3] X_12513389_SNP [dm6]	A	T	3.146e^-4	0.924	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	21166674	2L_21166674_SNP [dm3] 2L_21166674_SNP [dm6]	G	C	3.157e^-4	0.924	UTR_5_PRIME CG43346 UTR_3_PRIME CG43345 UPSTREAM CG43346 DOWNSTREAM CG9246	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17480680	2R_17480680_SNP [dm3] 2R_21593175_SNP [dm6]	A	G	3.164e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3616631	2L_3616631_DEL [dm3] 2L_3616631_DEL [dm6]	TAAATGTTTAATTAAAGGGA...	T	3.166e^-4	0.924	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9409429	2L_9409429_SNP [dm3] 2L_9409429_SNP [dm6]	G	A	3.168e^-4	0.924	INTRON Shawl
2R	9004639	2R_9004639_SNP [dm3] 2R_13117134_SNP [dm6]	T	C	3.171e^-4	0.924	INTRON CG13325
3R	1041797	3R_1041797_SNP [dm3] 3R_5216075_SNP [dm6]	T	A	3.171e^-4	0.924	INTRON cno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6679161	2R_6679161_SNP [dm3] 2R_10791656_SNP [dm6]	T	C	3.172e^-4	0.924	SYNONYMOUS_CODING mthl13 INTRON CG33144
3L	9716472	3L_9716472_SNP [dm3] 3L_9723372_SNP [dm6]	T	G	3.181e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10492095	2R_10492095_SNP [dm3] 2R_14604590_SNP [dm6]	C	G	3.192e^-4	0.924	UTR_3_PRIME CG12868 UPSTREAM tra2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24875360	3R_24875360_SNP [dm3] 3R_29049638_SNP [dm6]	T	C	3.192e^-4	0.924	SYNONYMOUS_CODING CG11837 DOWNSTREAM Pkc98E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10505842	3R_10505842_SNP [dm3] 3R_14680120_SNP [dm6]	A	T	3.195e^-4	0.924	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	7220909	X_7220909_SNP [dm3] X_7326876_SNP [dm6]	C	T	3.196e^-4	0.924	SYNONYMOUS_CODING Dok INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12539361	2L_12539361_SNP [dm3] 2L_12539361_SNP [dm6]	C	T	3.207e^-4	0.924	SYNONYMOUS_CODING bun UTR_5_PRIME bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	14712182	2R_14712182_SNP [dm3] 2R_18824677_SNP [dm6]	T	A	3.227e^-4	0.924	UTR_5_PRIME CG15097 INTRON CG15097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9571686	2R_9571686_DEL [dm3] 2R_13684181_DEL [dm6]	TGCTTTGTTTT...	T	3.234e^-4	0.924	INTRON fas
3R	25286369	3R_25286369_SNP [dm3] 3R_29460647_SNP [dm6]	T	C	3.234e^-4	0.924	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7065222	3R_7065222_SNP [dm3] 3R_11239500_SNP [dm6]	A	G	3.241e^-4	0.924	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
2R	17305414	2R_17305414_SNP [dm3] 2R_21417909_SNP [dm6]	A	T	3.242e^-4	0.924	UPSTREAM Sdc INTRON Sdc
X	15364667	X_15364667_SNP [dm3] X_15470634_SNP [dm6]	A	G	3.244e^-4	0.924	INTRON Grip128	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	4290924	X_4290924_SNP [dm3] X_4396891_SNP [dm6]	G	T	3.250e^-4	0.924	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1029649	2L_1029649_SNP [dm3] 2L_1029649_SNP [dm6]	T	A	3.257e^-4	0.924	INTRON IA-2
2R	1222380	2R_1222380_SNP [dm3] 2R_5334875_SNP [dm6]	C	T	3.260e^-4	0.924	INTERGENIC	transposable element FlyBase
X	6401053	X_6401053_SNP [dm3] X_6507020_SNP [dm6]	G	C	3.266e^-4	0.924	INTRON CG42340
2L	1311840	2L_1311840_SNP [dm3] 2L_1311840_SNP [dm6]	A	T	3.270e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11222772	2R_11222772_SNP [dm3] 2R_15335267_SNP [dm6]	G	A	3.279e^-4	0.924	INTRON Hr51
2L	4206576	2L_4206576_SNP [dm3] 2L_4206576_SNP [dm6]	G	T	3.283e^-4	0.924	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	15327321	2R_15327321_SNP [dm3] 2R_19439816_SNP [dm6]	G	A	3.286e^-4	0.924	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13962054	2R_13962054_SNP [dm3] 2R_18074549_SNP [dm6]	T	C	3.287e^-4	0.924	DOWNSTREAM CR45022 INTRON CG34386
2R	10341597	2R_10341597_SNP [dm3] 2R_14454092_SNP [dm6]	C	T	3.295e^-4	0.924	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26045725	3R_26045725_SNP [dm3] 3R_30220003_SNP [dm6]	A	T	3.296e^-4	0.924	INTERGENIC
2R	19991045	2R_19991045_SNP [dm3] 2R_24103522_SNP [dm6]	A	T	3.307e^-4	0.924	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16257237	3R_16257237_DEL [dm3] 3R_20431515_DEL [dm6]	TG	T	3.307e^-4	0.924	INTRON Gfrl
3R	24569370	3R_24569370_SNP [dm3] 3R_28743648_SNP [dm6]	A	G	3.308e^-4	0.924	SYNONYMOUS_CODING AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
X	12273768	X_12273768_SNP [dm3] X_12379735_SNP [dm6]	G	C	3.311e^-4	0.924	INTERGENIC
2R	6769981	2R_6769981_SNP [dm3] 2R_10882476_SNP [dm6]	A	G	3.315e^-4	0.924	SYNONYMOUS_CODING Pex6
3R	9755255	3R_9755255_SNP [dm3] 3R_13929533_SNP [dm6]	T	G	3.317e^-4	0.924	INTERGENIC
2L	13845149	2L_13845149_SNP [dm3] 2L_13845149_SNP [dm6]	G	C	3.318e^-4	0.924	INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad
3L	890659	3L_890659_SNP [dm3] 3L_890659_SNP [dm6]	T	C	3.320e^-4	0.924	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad
2R	7819166	2R_7819166_SNP [dm3] 2R_11931661_SNP [dm6]	C	T	3.336e^-4	0.924	INTERGENIC
2R	19944427	2R_19944427_SNP [dm3] 2R_24056904_SNP [dm6]	G	A	3.344e^-4	0.924	SYNONYMOUS_CODING CG13563 UPSTREAM eIF-5A INTRON ppk29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	3.345e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10876130	3R_10876130_SNP [dm3] 3R_15050408_SNP [dm6]	G	A	3.345e^-4	0.924	INTERGENIC
3L	23138485	3L_23138485_DEL [dm3] 3L_23145385_DEL [dm6]	TAGTTT	T	3.349e^-4	0.924	INTERGENIC	transposable element FlyBase
2L	8141149	2L_8141149_SNP [dm3] 2L_8141149_SNP [dm6]	A	T	3.359e^-4	0.924	DOWNSTREAM mir-4984 INTRON CG8552
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	3.363e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	12240043	X_12240043_SNP [dm3] X_12346010_SNP [dm6]	A	G	3.363e^-4	0.924	INTERGENIC
3R	22484986	3R_22484986_DEL [dm3] 3R_26659264_DEL [dm6]	CATGCCGCCCATGATGCACA...	C	3.366e^-4	0.924	INTRON beat-VII
3R	1044632	3R_1044632_SNP [dm3] 3R_5218910_SNP [dm6]	T	C	3.377e^-4	0.924	NON_SYNONYMOUS_CODING Prosbeta2R2 UPSTREAM CG1116	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4116286	2L_4116286_SNP [dm3] 2L_4116286_SNP [dm6]	C	A	3.378e^-4	0.924	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5791475	2L_5791475_SNP [dm3] 2L_5791475_SNP [dm6]	C	A	3.378e^-4	0.924	INTRON CG9171
3L	17976546	3L_17976546_SNP [dm3] 3L_17983446_SNP [dm6]	G	A	3.382e^-4	0.924	INTRON Eip75B
2L	916066	2L_916066_SNP [dm3] 2L_916066_SNP [dm6]	G	C	3.386e^-4	0.924	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26442008	3R_26442008_SNP [dm3] 3R_30616286_SNP [dm6]	G	C	3.400e^-4	0.924	DOWNSTREAM CR45571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2886505	3L_2886505_SNP [dm3] 3L_2886505_SNP [dm6]	G	T	3.402e^-4	0.924	INTRON spz5	TF binding site mE1_TFBS_bab1
X	12240059	X_12240059_SNP [dm3] X_12346026_SNP [dm6]	T	A	3.403e^-4	0.924	INTERGENIC
2L	5189188	2L_5189188_SNP [dm3] 2L_5189188_SNP [dm6]	G	A	3.407e^-4	0.924	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
3R	12141729	3R_12141729_SNP [dm3] 3R_16316007_SNP [dm6]	C	T	3.423e^-4	0.924	INTRON Sulf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	4909476	3L_4909476_SNP [dm3] 3L_4909476_SNP [dm6]	T	G	3.429e^-4	0.924	UPSTREAM Rh50 INTERGENIC
3R	26486159	3R_26486159_SNP [dm3] 3R_30660437_SNP [dm6]	T	C	3.439e^-4	0.924	INTERGENIC
X	4290212	X_4290212_SNP [dm3] X_4396179_SNP [dm6]	A	G	3.441e^-4	0.924	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6920309	2L_6920309_SNP [dm3] 2L_6920309_SNP [dm6]	T	G	3.444e^-4	0.924	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	5076872	X_5076872_SNP [dm3] X_5182839_SNP [dm6]	T	A	3.446e^-4	0.924	UPSTREAM CG5062 INTRON rg & 1 other
2R	10501756	2R_10501756_SNP [dm3] 2R_14614251_SNP [dm6]	T	A	3.450e^-4	0.924	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2R	10505423	2R_10505423_SNP [dm3] 2R_14617918_SNP [dm6]	C	T	3.450e^-4	0.924	UTR_5_PRIME Su_var_2-HP2 UPSTREAM Sec61beta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15731247	X_15731247_SNP [dm3] X_15837214_SNP [dm6]	T	A	3.452e^-4	0.924	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC	transposable element FlyBase
3R	12842698	3R_12842698_SNP [dm3] 3R_17016976_SNP [dm6]	G	C	3.452e^-4	0.924	INTRON Pxd
3L	10822228	3L_10822228_SNP [dm3] 3L_10829128_SNP [dm6]	C	T	3.455e^-4	0.924	INTERGENIC
3L	7170161	3L_7170161_SNP [dm3] 3L_7177061_SNP [dm6]	G	A	3.457e^-4	0.924	INTRON Dscam2
2R	41583	2R_41583_SNP [dm3] 2R_4154078_SNP [dm6]	G	A	3.458e^-4	0.924	INTERGENIC
2R	9776677	2R_9776677_SNP [dm3] 2R_13889172_SNP [dm6]	T	C	3.461e^-4	0.924	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12676217	X_12676217_SNP [dm3] X_12782184_SNP [dm6]	T	G	3.470e^-4	0.924	INTRON CG32647
2R	7832166	2R_7832166_SNP [dm3] 2R_11944661_SNP [dm6]	G	A	3.471e^-4	0.924	INTRON CG13188
2L	6923706	2L_6923706_SNP [dm3] 2L_6923706_SNP [dm6]	A	T	3.477e^-4	0.924	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3R	18966011	3R_18966011_SNP [dm3] 3R_23140289_SNP [dm6]	C	T	3.479e^-4	0.924	INTRON hh	TF binding site mE1_TFBS_cad
3L	7900187	3L_7900187_SNP [dm3] 3L_7907087_SNP [dm6]	A	C	3.483e^-4	0.924	INTRON pbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16257233	3R_16257233_DEL [dm3] 3R_20431511_DEL [dm6]	AA	A	3.489e^-4	0.924	INTRON Gfrl
2R	16825515	2R_16825515_SNP [dm3] 2R_20938010_SNP [dm6]	C	A	3.492e^-4	0.924	DOWNSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	25540267	3R_25540267_SNP [dm3] 3R_29714545_SNP [dm6]	C	T	3.495e^-4	0.924	NON_SYNONYMOUS_CODING Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6085755	3L_6085755_SNP [dm3] 3L_6092655_SNP [dm6]	T	C	3.499e^-4	0.924	SYNONYMOUS_CODING CG10469 DOWNSTREAM CG13293 & 1 other
3L	6836354	3L_6836354_DEL [dm3] 3L_6843254_DEL [dm6]	TTT	T	3.501e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7100083	2L_7100083_SNP [dm3] 2L_7100083_SNP [dm6]	T	A	3.503e^-4	0.924	UTR_3_PRIME Pvf3	TF binding site BDTNP1_TFBS_sna
2L	5395593	2L_5395593_SNP [dm3] 2L_5395593_SNP [dm6]	A	C	3.505e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15677965	2R_15677965_SNP [dm3] 2R_19790460_SNP [dm6]	C	T	3.507e^-4	0.924	DOWNSTREAM CR45231 INTERGENIC
3R	12327378	3R_12327378_SNP [dm3] 3R_16501656_SNP [dm6]	A	T	3.515e^-4	0.924	UPSTREAM decay INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	7951429	3L_7951429_SNP [dm3] 3L_7958329_SNP [dm6]	A	C	3.525e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20191135	3R_20191135_SNP [dm3] 3R_24365413_SNP [dm6]	A	G	3.526e^-4	0.924	UPSTREAM CG13613 & 1 other INTERGENIC
3R	4574582	3R_4574582_SNP [dm3] 3R_8748860_SNP [dm6]	C	T	3.535e^-4	0.924	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17929924	2R_17929924_SNP [dm3] 2R_22042419_SNP [dm6]	C	T	3.536e^-4	0.924	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	17610150	2L_17610150_SNP [dm3] 2L_17610150_SNP [dm6]	T	C	3.539e^-4	0.924	INTERGENIC
3R	26493833	3R_26493833_SNP [dm3] 3R_30668111_SNP [dm6]	C	G	3.540e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	8852524	3L_8852524_SNP [dm3] 3L_8859424_SNP [dm6]	A	T	3.544e^-4	0.924	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	1148227	3L_1148227_SNP [dm3] 3L_1148227_SNP [dm6]	C	T	3.555e^-4	0.924	INTRON bab2
3R	7058382	3R_7058382_SNP [dm3] 3R_11232660_SNP [dm6]	T	A	3.569e^-4	0.924	UTR_3_PRIME Arfip UPSTREAM CG17187 DOWNSTREAM CG14701	TF binding site mE1_TFBS_cad
X	15355961	X_15355961_SNP [dm3] X_15461928_SNP [dm6]	C	A	3.570e^-4	0.924	SYNONYMOUS_CODING shtd UPSTREAM CG6299 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13556234	3R_13556234_SNP [dm3] 3R_17730512_SNP [dm6]	C	T	3.576e^-4	0.924	INTRON Lgr1
3R	1026049	3R_1026049_SNP [dm3] 3R_5200327_SNP [dm6]	T	A	3.582e^-4	0.924	INTRON cno	TF binding site mE1_TFBS_HSA
2R	239108	2R_239108_SNP [dm3] 2R_4351603_SNP [dm6]	T	C	3.584e^-4	0.924	INTRON Gprk1
2R	313230	2R_313230_SNP [dm3] 2R_4425725_SNP [dm6]	C	A	3.584e^-4	0.924	INTRON Gprk1	TF binding site mE1_TFBS_sbb
2L	9856290	2L_9856290_SNP [dm3] 2L_9856290_SNP [dm6]	T	C	3.592e^-4	0.924	INTRON nAChRalpha6
2L	1317093	2L_1317093_SNP [dm3] 2L_1317093_SNP [dm6]	C	T	3.594e^-4	0.924	INTERGENIC
2L	5762440	2L_5762440_SNP [dm3] 2L_5762440_SNP [dm6]	T	C	3.600e^-4	0.924	DOWNSTREAM obst-E & 1 other INTERGENIC
2R	10499576	2R_10499576_SNP [dm3] 2R_14612071_SNP [dm6]	T	C	3.604e^-4	0.924	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2
2L	13171944	2L_13171944_SNP [dm3] 2L_13171944_SNP [dm6]	C	T	3.606e^-4	0.924	SYNONYMOUS_CODING Sfmbt
2L	4749690	2L_4749690_SNP [dm3] 2L_4749690_SNP [dm6]	A	G	3.606e^-4	0.924	INTRON CG15630
2L	21092538	2L_21092538_SNP [dm3] 2L_21092538_SNP [dm6]	C	T	3.621e^-4	0.924	INTRON CG14397	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15678725	2R_15678725_SNP [dm3] 2R_19791220_SNP [dm6]	T	C	3.622e^-4	0.924	INTERGENIC
2R	11446649	2R_11446649_SNP [dm3] 2R_15559144_SNP [dm6]	A	C	3.623e^-4	0.924	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16092825	2R_16092825_SNP [dm3] 2R_20205320_SNP [dm6]	C	T	3.623e^-4	0.924	INTERGENIC
2L	10032393	2L_10032393_SNP [dm3] 2L_10032393_SNP [dm6]	G	T	3.627e^-4	0.924	UPSTREAM obst-B INTERGENIC
X	12087741	X_12087741_INS [dm3] X_12193708_INS [dm6]	C	CGTCGTCATC	3.629e^-4	0.924	UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_cad
2R	10482479	2R_10482479_SNP [dm3] 2R_14594974_SNP [dm6]	T	C	3.634e^-4	0.924	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
X	12676781	X_12676781_SNP [dm3] X_12782748_SNP [dm6]	T	C	3.642e^-4	0.924	INTRON CG32647
3L	14227673	3L_14227673_SNP [dm3] 3L_14234573_SNP [dm6]	A	C	3.652e^-4	0.924	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
2R	18643473	2R_18643473_SNP [dm3] 2R_22755968_SNP [dm6]	G	T	3.655e^-4	0.924	UPSTREAM CR30267 DOWNSTREAM CG13526 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7493954	2L_7493954_SNP [dm3] 2L_7493954_SNP [dm6]	T	G	3.662e^-4	0.924	INTRON Ziz
2R	19274296	2R_19274296_SNP [dm3] 2R_23386773_SNP [dm6]	G	A	3.664e^-4	0.924	UPSTREAM eIF2B-delta & 1 other INTRON eIF2B-delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5770205	2L_5770205_SNP [dm3] 2L_5770205_SNP [dm6]	G	A	3.668e^-4	0.924	SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19339440	3L_19339440_SNP [dm3] 3L_19346340_SNP [dm6]	C	A	3.668e^-4	0.924	INTRON CG32206
2L	22294273	2L_22294273_SNP [dm3] 2L_22294273_SNP [dm6]	A	C	3.680e^-4	0.924	INTERGENIC
3L	2951290	3L_2951290_SNP [dm3] 3L_2951290_SNP [dm6]	T	C	3.691e^-4	0.924	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
3L	17048838	3L_17048838_SNP [dm3] 3L_17055738_SNP [dm6]	T	C	3.695e^-4	0.924	DOWNSTREAM rogdi INTRON CG7724
3R	20463878	3R_20463878_SNP [dm3] 3R_24638156_SNP [dm6]	C	T	3.706e^-4	0.924	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5152539	2L_5152539_SNP [dm3] 2L_5152539_SNP [dm6]	T	A	3.713e^-4	0.924	INTRON Msp300
3R	20930519	3R_20930519_SNP [dm3] 3R_25104797_SNP [dm6]	C	T	3.713e^-4	0.924	INTRON CG34027
2L	10056897	2L_10056897_SNP [dm3] 2L_10056897_SNP [dm6]	T	C	3.723e^-4	0.924	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9790343	X_9790343_INS [dm3] X_9896310_INS [dm6]	A	AACAAACAA	3.740e^-4	0.924	INTRON CG15249
3R	12641089	3R_12641089_SNP [dm3] 3R_16815367_SNP [dm6]	T	A	3.754e^-4	0.924	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3501019	3L_3501019_SNP [dm3] 3L_3501019_SNP [dm6]	G	A	3.769e^-4	0.924	INTRON CG42324
2L	21173581	2L_21173581_SNP [dm3] 2L_21173581_SNP [dm6]	G	T	3.774e^-4	0.924	NON_SYNONYMOUS_CODING CG31627 DOWNSTREAM Acon & 1 other
3R	25538919	3R_25538919_SNP [dm3] 3R_29713197_SNP [dm6]	G	C	3.776e^-4	0.924	DOWNSTREAM CR45569 INTERGENIC
3R	1041795	3R_1041795_SNP [dm3] 3R_5216073_SNP [dm6]	G	A	3.777e^-4	0.924	INTRON cno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24875382	3R_24875382_SNP [dm3] 3R_29049660_SNP [dm6]	G	T	3.780e^-4	0.924	DOWNSTREAM Pkc98E INTRON CG11837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17617464	2L_17617464_SNP [dm3] 2L_17617464_SNP [dm6]	A	C	3.794e^-4	0.924	INTERGENIC
2R	17484170	2R_17484170_SNP [dm3] 2R_21596665_SNP [dm6]	A	C	3.795e^-4	0.924	INTERGENIC
2L	973383	2L_973383_DEL [dm3] 2L_973383_DEL [dm6]	CCAGGACCCGAGCAC...	C	3.802e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15357586	X_15357586_SNP [dm3] X_15463553_SNP [dm6]	C	T	3.813e^-4	0.924	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2162506	3L_2162506_DEL [dm3] 3L_2162506_DEL [dm6]	ACAATA	A	3.817e^-4	0.924	INTRON CG15822
3L	1277846	3L_1277846_SNP [dm3] 3L_1277846_SNP [dm6]	A	T	3.829e^-4	0.924	INTRON CG32333
3L	3755511	3L_3755511_SNP [dm3] 3L_3755511_SNP [dm6]	C	T	3.837e^-4	0.924	UPSTREAM ppk27 INTRON CG32264
X	12369163	X_12369163_SNP [dm3] X_12475130_SNP [dm6]	C	G	3.843e^-4	0.924	UPSTREAM CG42258 INTRON CG42258
3L	8915776	3L_8915776_SNP [dm3] 3L_8922676_SNP [dm6]	A	G	3.851e^-4	0.924	INTRON Tsp66E
3L	4462545	3L_4462545_SNP [dm3] 3L_4462545_SNP [dm6]	A	G	3.868e^-4	0.924	DOWNSTREAM CG15024 INTERGENIC
3L	6836378	3L_6836378_SNP [dm3] 3L_6843278_SNP [dm6]	T	C	3.880e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5395435	2L_5395435_SNP [dm3] 2L_5395435_SNP [dm6]	C	G	3.883e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2164089	3L_2164089_SNP [dm3] 3L_2164089_SNP [dm6]	A	C	3.884e^-4	0.924	UPSTREAM CG15822 INTERGENIC
2R	16092804	2R_16092804_SNP [dm3] 2R_20205299_SNP [dm6]	A	G	3.885e^-4	0.924	INTERGENIC
3R	27065958	3R_27065958_SNP [dm3] 3R_31240236_SNP [dm6]	C	A	3.888e^-4	0.924	INTRON qless
X	18778150	X_18778150_SNP [dm3] X_18884117_SNP [dm6]	A	G	3.896e^-4	0.924	UPSTREAM CG7332 DOWNSTREAM CG34401 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	24702524	3R_24702524_SNP [dm3] 3R_28876802_SNP [dm6]	G	A	3.896e^-4	0.924	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7991298	2L_7991298_SNP [dm3] 2L_7991298_SNP [dm6]	G	C	3.898e^-4	0.924	INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10480221	2R_10480221_SNP [dm3] 2R_14592716_SNP [dm6]	T	A	3.905e^-4	0.924	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
3R	11010383	3R_11010383_SNP [dm3] 3R_15184661_SNP [dm6]	A	G	3.906e^-4	0.924	INTRON Gyc88E	TF binding site mE1_TFBS_cad
2R	8244871	2R_8244871_SNP [dm3] 2R_12357366_SNP [dm6]	A	G	3.909e^-4	0.924	SYNONYMOUS_CODING CG30049
3R	18423006	3R_18423006_SNP [dm3] 3R_22597284_SNP [dm6]	C	A	3.911e^-4	0.924	INTRON Efa6	TF binding site mE1_TFBS_HSA
X	12270172	X_12270172_SNP [dm3] X_12376139_SNP [dm6]	A	G	3.911e^-4	0.924	SYNONYMOUS_CODING Ir11a	TF binding site mE1_TFBS_chinmo
3L	22399651	3L_22399651_SNP [dm3] 3L_22406551_SNP [dm6]	C	A	3.914e^-4	0.924	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7981123	2R_7981123_SNP [dm3] 2R_12093618_SNP [dm6]	C	A	3.915e^-4	0.924	INTRON jeb
3R	17803994	3R_17803994_SNP [dm3] 3R_21978272_SNP [dm6]	G	C	3.915e^-4	0.924	INTRON Eip93F
2R	14892785	2R_14892785_SNP [dm3] 2R_19005280_SNP [dm6]	A	G	3.926e^-4	0.924	INTRON tn
2R	17453571	2R_17453571_SNP [dm3] 2R_21566066_SNP [dm6]	C	T	3.928e^-4	0.924	INTRON CG10440
2R	20214732	2R_20214732_SNP [dm3] 2R_24327209_SNP [dm6]	T	G	3.933e^-4	0.924	INTRON CR44810
X	19045807	X_19045807_SNP [dm3] X_19151774_SNP [dm6]	G	T	3.933e^-4	0.924	SYNONYMOUS_CODING RhoGAP18B INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
3R	10112745	3R_10112745_SNP [dm3] 3R_14287023_SNP [dm6]	G	A	3.941e^-4	0.924	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	21024805	2L_21024805_SNP [dm3] 2L_21024805_SNP [dm6]	T	A	3.945e^-4	0.924	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26116455	3R_26116455_SNP [dm3] 3R_30290733_SNP [dm6]	A	C	3.947e^-4	0.924	INTRON hdc
X	1870046	X_1870046_SNP [dm3] X_1976013_SNP [dm6]	G	C	3.952e^-4	0.924	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5438815	2L_5438815_SNP [dm3] 2L_5438815_SNP [dm6]	G	T	3.963e^-4	0.924	INTRON CR31647
3L	15115352	3L_15115352_SNP [dm3] 3L_15122252_SNP [dm6]	G	T	3.968e^-4	0.924	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	16333703	2R_16333703_SNP [dm3] 2R_20446198_SNP [dm6]	C	G	3.978e^-4	0.924	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	17713410	3L_17713410_SNP [dm3] 3L_17720310_SNP [dm6]	G	C	3.980e^-4	0.924	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	11848760	3R_11848760_SNP [dm3] 3R_16023038_SNP [dm6]	C	T	3.987e^-4	0.924	INTERGENIC
3R	16104871	3R_16104871_DEL [dm3] 3R_20279149_DEL [dm6]	ACA	A	3.987e^-4	0.924	INTRON cic
X	22045979	X_22045979_SNP [dm3] X_22644143_SNP [dm6]	G	A	3.990e^-4	0.924	INTERGENIC
2R	14706370	2R_14706370_SNP [dm3] 2R_18818865_SNP [dm6]	G	T	4.011e^-4	0.924	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10496023	2R_10496023_SNP [dm3] 2R_14608518_SNP [dm6]	T	C	4.020e^-4	0.924	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17210697	3L_17210697_SNP [dm3] 3L_17217597_SNP [dm6]	G	A	4.021e^-4	0.924	INTRON Rbp6
2L	8222670	2L_8222670_SNP [dm3] 2L_8222670_SNP [dm6]	A	G	4.022e^-4	0.924	SYNONYMOUS_CODING Pvr
X	18611535	X_18611535_SNP [dm3] X_18717502_SNP [dm6]	A	G	4.023e^-4	0.924	INTRON CCKLR-17D1
2R	1302886	2R_1302886_SNP [dm3] 2R_5415381_SNP [dm6]	A	C	4.025e^-4	0.924	UPSTREAM laccase2 INTRON laccase2	TF binding site mE1_TFBS_kn
3L	18093836	3L_18093836_SNP [dm3] 3L_18100736_SNP [dm6]	T	C	4.026e^-4	0.924	INTRON CG13698
3R	18423341	3R_18423341_SNP [dm3] 3R_22597619_SNP [dm6]	T	A	4.030e^-4	0.924	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13592475	3R_13592475_SNP [dm3] 3R_17766753_SNP [dm6]	G	A	4.030e^-4	0.924	INTERGENIC
3R	23827138	3R_23827138_SNP [dm3] 3R_28001416_SNP [dm6]	A	C	4.034e^-4	0.924	INTERGENIC
X	15294646	X_15294646_SNP [dm3] X_15400613_SNP [dm6]	T	C	4.040e^-4	0.924	INTRON Cngl
3L	11163756	3L_11163756_SNP [dm3] 3L_11170656_SNP [dm6]	T	G	4.041e^-4	0.924	SYNONYMOUS_CODING CG7616	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1436913	3L_1436913_SNP [dm3] 3L_1436913_SNP [dm6]	A	C	4.051e^-4	0.924	INTRON Ptp61F & 1 other
3L	5725578	3L_5725578_SNP [dm3] 3L_5732478_SNP [dm6]	T	A	4.051e^-4	0.924	INTRON sif
2L	538520	2L_538520_SNP [dm3] 2L_538520_SNP [dm6]	A	G	4.061e^-4	0.924	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10486115	2R_10486115_SNP [dm3] 2R_14598610_SNP [dm6]	C	T	4.064e^-4	0.924	SYNONYMOUS_CODING RpI1
3R	11848755	3R_11848755_INS [dm3] 3R_16023033_INS [dm6]	AG	GCCGCGATGT	4.067e^-4	0.924	INTERGENIC
2R	10594731	2R_10594731_SNP [dm3] 2R_14707226_SNP [dm6]	G	A	4.068e^-4	0.924	INTRON mspo
3R	19409585	3R_19409585_SNP [dm3] 3R_23583863_SNP [dm6]	C	A	4.071e^-4	0.924	INTERGENIC
2L	5188805	2L_5188805_SNP [dm3] 2L_5188805_SNP [dm6]	C	T	4.083e^-4	0.924	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM snoRNA:Psi28S-2263	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8141016	2L_8141016_SNP [dm3] 2L_8141016_SNP [dm6]	A	G	4.094e^-4	0.924	DOWNSTREAM mir-4984 INTRON CG8552	TF binding site mE1_TFBS_cad
3R	21533735	3R_21533735_SNP [dm3] 3R_25708013_SNP [dm6]	A	G	4.101e^-4	0.924	SYNONYMOUS_CODING LpR2 INTRON LpR2
3R	27010623	3R_27010623_SNP [dm3] 3R_31184901_SNP [dm6]	A	G	4.101e^-4	0.924	INTRON mesh
2R	18636496	2R_18636496_SNP [dm3] 2R_22748991_SNP [dm6]	G	C	4.104e^-4	0.924	INTRON CG42260
3R	22826401	3R_22826401_SNP [dm3] 3R_27000679_SNP [dm6]	G	T	4.106e^-4	0.924	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
2L	8472783	2L_8472783_SNP [dm3] 2L_8472783_SNP [dm6]	A	G	4.116e^-4	0.924	INTRON d
X	3055559	X_3055559_SNP [dm3] X_3161526_SNP [dm6]	C	A	4.128e^-4	0.924	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	322355	3L_322355_SNP [dm3] 3L_322355_SNP [dm6]	T	C	4.138e^-4	0.924	SYNONYMOUS_CODING CG32344	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15357259	X_15357259_SNP [dm3] X_15463226_SNP [dm6]	G	A	4.140e^-4	0.924	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19164414	2R_19164414_SNP [dm3] 2R_23276891_SNP [dm6]	T	C	4.140e^-4	0.924	INTERGENIC
2R	2970539	2R_2970539_SNP [dm3] 2R_7083034_SNP [dm6]	C	T	4.142e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
X	10748107	X_10748107_SNP [dm3] X_10854074_SNP [dm6]	C	G	4.149e^-4	0.924	NON_SYNONYMOUS_CODING feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	325484	3L_325484_SNP [dm3] 3L_325484_SNP [dm6]	C	T	4.153e^-4	0.924	NON_SYNONYMOUS_CODING Atac3 UPSTREAM CG32344	TF binding site mE1_TFBS_HSA
2R	1403251	2R_1403251_INS [dm3] 2R_5515746_INS [dm6]	G	GCCACTTTTGGAATGAGAAT...	4.157e^-4	0.924	INTRON CG30438
X	14878871	X_14878871_SNP [dm3] X_14984838_SNP [dm6]	C	A	4.169e^-4	0.924	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17410263	2R_17410263_SNP [dm3] 2R_21522758_SNP [dm6]	A	G	4.171e^-4	0.924	UTR_5_PRIME Egfr UPSTREAM CG30289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	25434106	3R_25434106_SNP [dm3] 3R_29608384_SNP [dm6]	T	C	4.174e^-4	0.924	UPSTREAM Diedel2 INTRON alph
X	3899826	X_3899826_SNP [dm3] X_4005793_SNP [dm6]	T	G	4.176e^-4	0.924	INTERGENIC
3L	9716322	3L_9716322_SNP [dm3] 3L_9723222_SNP [dm6]	A	T	4.178e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3728222	2L_3728222_SNP [dm3] 2L_3728222_SNP [dm6]	T	C	4.186e^-4	0.924	UTR_3_PRIME Shaw DOWNSTREAM Shaw
3R	19307927	3R_19307927_SNP [dm3] 3R_23482205_SNP [dm6]	G	A	4.189e^-4	0.924	NON_SYNONYMOUS_CODING Ir94f
X	18156290	X_18156290_SNP [dm3] X_18262257_SNP [dm6]	T	C	4.190e^-4	0.924	INTERGENIC
X	12240062	X_12240062_INS [dm3] X_12346029_INS [dm6]	T	TCGTTA	4.192e^-4	0.924	INTERGENIC
X	4625099	X_4625099_SNP [dm3] X_4731066_SNP [dm6]	G	T	4.192e^-4	0.924	INTERGENIC
X	5290044	X_5290044_SNP [dm3] X_5396011_SNP [dm6]	G	A	4.196e^-4	0.924	INTRON SK
X	5290049	X_5290049_SNP [dm3] X_5396016_SNP [dm6]	A	G	4.196e^-4	0.924	INTRON SK
3R	25114438	3R_25114438_SNP [dm3] 3R_29288716_SNP [dm6]	C	T	4.197e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10487734	2R_10487734_SNP [dm3] 2R_14600229_SNP [dm6]	C	A	4.197e^-4	0.924	SYNONYMOUS_CODING RpI1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	5290052	X_5290052_SNP [dm3] X_5396019_SNP [dm6]	T	A	4.201e^-4	0.924	INTRON SK
3R	1028827	3R_1028827_SNP [dm3] 3R_5203105_SNP [dm6]	T	C	4.204e^-4	0.924	SYNONYMOUS_CODING cno
X	10798592	X_10798592_SNP [dm3] X_10904559_SNP [dm6]	C	T	4.205e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5395597	2L_5395597_SNP [dm3] 2L_5395597_SNP [dm6]	G	T	4.207e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26070297	3R_26070297_SNP [dm3] 3R_30244575_SNP [dm6]	C	T	4.207e^-4	0.924	NON_SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1837237	3L_1837237_SNP [dm3] 3L_1837237_SNP [dm6]	C	T	4.210e^-4	0.924	INTERGENIC
2L	4983319	2L_4983319_SNP [dm3] 2L_4983319_SNP [dm6]	C	T	4.212e^-4	0.924	INTRON CG34126
3R	25044559	3R_25044559_SNP [dm3] 3R_29218837_SNP [dm6]	A	G	4.214e^-4	0.924	EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7085774	3R_7085774_SNP [dm3] 3R_11260052_SNP [dm6]	A	G	4.219e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10632029	3L_10632029_SNP [dm3] 3L_10638929_SNP [dm6]	C	A	4.222e^-4	0.924	UPSTREAM E_z_ & 1 other INTRON CG8009
2R	15522375	2R_15522375_SNP [dm3] 2R_19634870_SNP [dm6]	T	A	4.223e^-4	0.924	UPSTREAM CG42753 DOWNSTREAM CR44503 INTERGENIC
X	2323682	X_2323682_SNP [dm3] X_2429649_SNP [dm6]	T	A	4.227e^-4	0.924	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	7437094	3R_7437094_SNP [dm3] 3R_11611372_SNP [dm6]	T	A	4.229e^-4	0.924	INTRON Jupiter
3L	8210368	3L_8210368_SNP [dm3] 3L_8217268_SNP [dm6]	T	A	4.229e^-4	0.924	DOWNSTREAM CG13674 INTERGENIC
X	15357580	X_15357580_SNP [dm3] X_15463547_SNP [dm6]	G	T	4.234e^-4	0.924	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6327587	2R_6327587_INS [dm3] 2R_10440082_INS [dm6]	C	CG	4.235e^-4	0.924	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3L	2059395	3L_2059395_SNP [dm3] 3L_2059395_SNP [dm6]	G	T	4.237e^-4	0.924	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9800083	X_9800083_SNP [dm3] X_9906050_SNP [dm6]	A	G	4.249e^-4	0.924	INTERGENIC
3L	3755512	3L_3755512_SNP [dm3] 3L_3755512_SNP [dm6]	T	C	4.251e^-4	0.924	UPSTREAM ppk27 INTRON CG32264
3L	9540720	3L_9540720_SNP [dm3] 3L_9547620_SNP [dm6]	A	G	4.251e^-4	0.924	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12271121	2R_12271121_SNP [dm3] 2R_16383616_SNP [dm6]	A	G	4.252e^-4	0.924	UTR_3_PRIME CG43187
3R	22826376	3R_22826376_SNP [dm3] 3R_27000654_SNP [dm6]	T	C	4.259e^-4	0.924	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
2L	16769803	2L_16769803_SNP [dm3] 2L_16769803_SNP [dm6]	C	G	4.261e^-4	0.924	INTRON Mhc
X	20949280	X_20949280_SNP [dm3] X_21078253_SNP [dm6]	A	G	4.269e^-4	0.924	UTR_3_PRIME bves INTRON bves
3R	22826437	3R_22826437_SNP [dm3] 3R_27000715_SNP [dm6]	A	G	4.274e^-4	0.924	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3R	21593558	3R_21593558_SNP [dm3] 3R_25767836_SNP [dm6]	A	T	4.279e^-4	0.924	INTERGENIC
3L	11667357	3L_11667357_SNP [dm3] 3L_11674257_SNP [dm6]	A	T	4.283e^-4	0.924	INTRON CG32085	TF binding site mE1_TFBS_cad
3L	14227628	3L_14227628_SNP [dm3] 3L_14234528_SNP [dm6]	C	T	4.289e^-4	0.924	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
X	8247324	X_8247324_INS [dm3] X_8353291_INS [dm6]	T	TATGAA	4.298e^-4	0.924	INTRON nAChRalpha3
3R	7068942	3R_7068942_SNP [dm3] 3R_11243220_SNP [dm6]	A	C	4.298e^-4	0.924	INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5811443	3L_5811443_SNP [dm3] 3L_5818343_SNP [dm6]	G	T	4.303e^-4	0.924	INTRON vn
2L	13950023	2L_13950023_SNP [dm3] 2L_13950023_SNP [dm6]	G	T	4.305e^-4	0.924	INTRON Ance-3
2L	8171386	2L_8171386_SNP [dm3] 2L_8171386_SNP [dm6]	T	G	4.311e^-4	0.924	INTRON Piezo
3L	291809	3L_291809_SNP [dm3] 3L_291809_SNP [dm6]	G	A	4.325e^-4	0.924	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5213562	3L_5213562_SNP [dm3] 3L_5220462_SNP [dm6]	C	T	4.329e^-4	0.924	INTRON shep
2R	10481298	2R_10481298_SNP [dm3] 2R_14593793_SNP [dm6]	T	C	4.331e^-4	0.924	NON_SYNONYMOUS_CODING CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19578091	2L_19578091_SNP [dm3] 2L_19578091_SNP [dm6]	A	C	4.331e^-4	0.924	NON_SYNONYMOUS_CODING msb1l UPSTREAM spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19281648	2L_19281648_SNP [dm3] 2L_19281648_SNP [dm6]	A	T	4.336e^-4	0.924	INTERGENIC
3R	21859956	3R_21859956_SNP [dm3] 3R_26034234_SNP [dm6]	T	A	4.356e^-4	0.924	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	22994109	3R_22994109_SNP [dm3] 3R_27168387_SNP [dm6]	G	C	4.368e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs
3R	24793747	3R_24793747_DEL [dm3] 3R_28968025_DEL [dm6]	CGGAGGCC	C	4.370e^-4	0.924	INTRON CG14521
2L	14172952	2L_14172952_SNP [dm3] 2L_14172952_SNP [dm6]	A	T	4.381e^-4	0.924	INTRON CG43333
2R	6561608	2R_6561608_SNP [dm3] 2R_10674103_SNP [dm6]	G	A	4.391e^-4	0.924	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5238469	3L_5238469_SNP [dm3] 3L_5245369_SNP [dm6]	T	C	4.391e^-4	0.924	INTRON shep
3R	27011080	3R_27011080_DEL [dm3] 3R_31185358_DEL [dm6]	GGGTT	G	4.394e^-4	0.924	INTRON mesh
2R	15677901	2R_15677901_SNP [dm3] 2R_19790396_SNP [dm6]	A	G	4.401e^-4	0.924	DOWNSTREAM CR45231 INTERGENIC
3L	292338	3L_292338_SNP [dm3] 3L_292338_SNP [dm6]	A	T	4.401e^-4	0.924	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	292340	3L_292340_SNP [dm3] 3L_292340_SNP [dm6]	C	T	4.401e^-4	0.924	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2L	7222675	2L_7222675_SNP [dm3] 2L_7222675_SNP [dm6]	C	T	4.415e^-4	0.924	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25190698	3R_25190698_SNP [dm3] 3R_29364976_SNP [dm6]	C	A	4.420e^-4	0.924	INTERGENIC
2L	12091176	2L_12091176_DEL [dm3] 2L_12091176_DEL [dm6]	GG	G	4.421e^-4	0.924	UPSTREAM Pex19 DOWNSTREAM CR44594 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	5290043	X_5290043_SNP [dm3] X_5396010_SNP [dm6]	T	C	4.423e^-4	0.924	INTRON SK
2L	14165377	2L_14165377_SNP [dm3] 2L_14165377_SNP [dm6]	G	A	4.427e^-4	0.924	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
3L	16745327	3L_16745327_SNP [dm3] 3L_16752227_SNP [dm6]	T	C	4.428e^-4	0.924	INTERGENIC
2R	17139038	2R_17139038_SNP [dm3] 2R_21251533_SNP [dm6]	T	C	4.434e^-4	0.924	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12766952	3L_12766952_SNP [dm3] 3L_12773852_SNP [dm6]	T	A	4.447e^-4	0.924	UPSTREAM Hip1 DOWNSTREAM CG32106 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8378677	X_8378677_SNP [dm3] X_8484644_SNP [dm6]	C	T	4.448e^-4	0.924	UPSTREAM CG33223 DOWNSTREAM otu & 1 other INTERGENIC
X	14198071	X_14198071_SNP [dm3] X_14304038_SNP [dm6]	G	A	4.453e^-4	0.924	INTERGENIC
X	3055663	X_3055663_SNP [dm3] X_3161630_SNP [dm6]	T	A	4.453e^-4	0.924	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3055785	X_3055785_DEL [dm3] X_3161752_DEL [dm6]	CATCC	C	4.453e^-4	0.924	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7010620	2L_7010620_SNP [dm3] 2L_7010620_SNP [dm6]	G	C	4.455e^-4	0.924	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24633430	3R_24633430_SNP [dm3] 3R_28807708_SNP [dm6]	G	A	4.455e^-4	0.924	DOWNSTREAM wdn & 1 other INTERGENIC
3R	10919006	3R_10919006_INS [dm3] 3R_15093284_INS [dm6]	G	GG	4.460e^-4	0.924	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6803291	2L_6803291_DEL [dm3] 2L_6803291_DEL [dm6]	ATA	A	4.461e^-4	0.924	UPSTREAM CG17377 INTRON CG11236	regulatory region REDfly_CRMs
2L	6190746	2L_6190746_SNP [dm3] 2L_6190746_SNP [dm6]	C	A	4.464e^-4	0.924	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7276312	2R_7276312_INS [dm3] 2R_11388807_INS [dm6]	T	TT	4.465e^-4	0.924	UPSTREAM CG30022 INTRON sprt
3R	19307916	3R_19307916_SNP [dm3] 3R_23482194_SNP [dm6]	G	A	4.467e^-4	0.924	SYNONYMOUS_CODING Ir94f
3R	13551264	3R_13551264_INS [dm3] 3R_17725542_INS [dm6]	T	TT	4.479e^-4	0.924	UPSTREAM Lgr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	4669535	X_4669535_SNP [dm3] X_4775502_SNP [dm6]	C	G	4.480e^-4	0.924	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2663256	2L_2663256_SNP [dm3] 2L_2663256_SNP [dm6]	C	T	4.480e^-4	0.924	INTERGENIC
3L	17212472	3L_17212472_DEL [dm3] 3L_17219372_DEL [dm6]	TG	T	4.484e^-4	0.924	INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	292295	3L_292295_SNP [dm3] 3L_292295_SNP [dm6]	G	C	4.487e^-4	0.924	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	11848767	3R_11848767_SNP [dm3] 3R_16023045_SNP [dm6]	G	T	4.488e^-4	0.924	INTERGENIC
2L	13990034	2L_13990034_SNP [dm3] 2L_13990034_SNP [dm6]	T	A	4.496e^-4	0.924	INTRON rk
2L	10032404	2L_10032404_SNP [dm3] 2L_10032404_SNP [dm6]	C	T	4.500e^-4	0.924	UPSTREAM obst-B INTERGENIC
3L	16743536	3L_16743536_SNP [dm3] 3L_16750436_SNP [dm6]	A	C	4.508e^-4	0.924	INTERGENIC
3L	1726836	3L_1726836_SNP [dm3] 3L_1726836_SNP [dm6]	G	T	4.524e^-4	0.924	INTRON drpr
2L	10115367	2L_10115367_SNP [dm3] 2L_10115367_SNP [dm6]	T	G	4.535e^-4	0.924	INTRON CG44153 & 1 other
2R	19951126	2R_19951126_SNP [dm3] 2R_24063603_SNP [dm6]	T	A	4.544e^-4	0.924	UPSTREAM Rap2l INTRON Rap2l	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	916144	2L_916144_SNP [dm3] 2L_916144_SNP [dm6]	C	T	4.549e^-4	0.924	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	17710496	3L_17710496_SNP [dm3] 3L_17717396_SNP [dm6]	T	C	4.551e^-4	0.924	INTRON Ccn
3R	11765701	3R_11765701_SNP [dm3] 3R_15939979_SNP [dm6]	C	G	4.553e^-4	0.924	INTRON Sap47
3R	11765702	3R_11765702_SNP [dm3] 3R_15939980_SNP [dm6]	G	C	4.553e^-4	0.924	INTRON Sap47
3L	8429255	3L_8429255_SNP [dm3] 3L_8436155_SNP [dm6]	A	G	4.563e^-4	0.924	SYNONYMOUS_CODING Unr
X	13742250	X_13742250_SNP [dm3] X_13848217_SNP [dm6]	T	G	4.566e^-4	0.924	UTR_3_PRIME mamo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15508148	3L_15508148_SNP [dm3] 3L_15515048_SNP [dm6]	C	T	4.567e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10595574	2R_10595574_SNP [dm3] 2R_14708069_SNP [dm6]	G	A	4.569e^-4	0.924	INTRON mspo
3R	24648395	3R_24648395_SNP [dm3] 3R_28822673_SNP [dm6]	C	G	4.579e^-4	0.924	SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4442870	3L_4442870_SNP [dm3] 3L_4442870_SNP [dm6]	T	C	4.581e^-4	0.924	INTERGENIC
2L	12091429	2L_12091429_SNP [dm3] 2L_12091429_SNP [dm6]	G	A	4.587e^-4	0.924	UPSTREAM Pex19 DOWNSTREAM CR44594 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6809833	2L_6809833_SNP [dm3] 2L_6809833_SNP [dm6]	G	A	4.591e^-4	0.924	INTERGENIC
2R	7325484	2R_7325484_SNP [dm3] 2R_11437979_SNP [dm6]	C	T	4.602e^-4	0.924	INTRON CG7777
X	18494394	X_18494394_SNP [dm3] X_18600361_SNP [dm6]	C	T	4.606e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25076965	3R_25076965_SNP [dm3] 3R_29251243_SNP [dm6]	G	A	4.607e^-4	0.924	UPSTREAM SP1029 DOWNSTREAM stg INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
X	2270115	X_2270115_SNP [dm3] X_2376082_SNP [dm6]	G	T	4.610e^-4	0.924	UTR_3_PRIME PsGEF INTRON PsGEF
2L	775095	2L_775095_SNP [dm3] 2L_775095_SNP [dm6]	C	A	4.613e^-4	0.924	INTERGENIC
3L	16474636	3L_16474636_SNP [dm3] 3L_16481536_SNP [dm6]	C	T	4.639e^-4	0.924	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1222266	2R_1222266_SNP [dm3] 2R_5334761_SNP [dm6]	G	C	4.643e^-4	0.924	INTERGENIC	transposable element FlyBase
3R	18141745	3R_18141745_SNP [dm3] 3R_22316023_SNP [dm6]	G	A	4.645e^-4	0.924	INTRON CG34377
3L	9716427	3L_9716427_SNP [dm3] 3L_9723327_SNP [dm6]	G	A	4.649e^-4	0.924	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9662387	3L_9662387_SNP [dm3] 3L_9669287_SNP [dm6]	A	G	4.652e^-4	0.924	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	13259733	3R_13259733_SNP [dm3] 3R_17434011_SNP [dm6]	A	G	4.653e^-4	0.924	UTR_3_PRIME CG44090 INTRON CG5873
3R	20602995	3R_20602995_DEL [dm3] 3R_24777273_DEL [dm6]	AA	A	4.659e^-4	0.924	INTRON CG42331
3L	14677988	3L_14677988_SNP [dm3] 3L_14684888_SNP [dm6]	G	C	4.660e^-4	0.924	UTR_5_PRIME CG5048 INTRON ome
2L	4210867	2L_4210867_SNP [dm3] 2L_4210867_SNP [dm6]	G	A	4.664e^-4	0.924	INTRON ft
3R	18854460	3R_18854460_SNP [dm3] 3R_23028738_SNP [dm6]	C	T	4.665e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9932477	3L_9932477_SNP [dm3] 3L_9939377_SNP [dm6]	A	G	4.666e^-4	0.924	INTRON CG34356
2R	251821	2R_251821_SNP [dm3] 2R_4364316_SNP [dm6]	G	A	4.674e^-4	0.924	INTRON Gprk1
3R	17717831	3R_17717831_SNP [dm3] 3R_21892109_SNP [dm6]	T	C	4.682e^-4	0.924	INTRON CG6678	TF binding site BDTNP1_TFBS_twi
2L	3616660	2L_3616660_SNP [dm3] 2L_3616660_SNP [dm6]	T	C	4.686e^-4	0.924	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	13844337	2L_13844337_SNP [dm3] 2L_13844337_SNP [dm6]	C	T	4.701e^-4	0.924	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_cad
X	5444666	X_5444666_DEL [dm3] X_5550633_DEL [dm6]	GTTATATGATTT...	C	4.702e^-4	0.924	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7804503	3L_7804503_DEL [dm3] 3L_7811403_DEL [dm6]	TT	T	4.703e^-4	0.924	DOWNSTREAM Pdp1 INTERGENIC
2L	3410908	2L_3410908_SNP [dm3] 2L_3410908_SNP [dm6]	T	C	4.711e^-4	0.924	SYNONYMOUS_CODING CG8840 INTRON pgant2
3R	23809571	3R_23809571_SNP [dm3] 3R_27983849_SNP [dm6]	G	T	4.714e^-4	0.924	INTRON betaTub97EF
3L	4611867	3L_4611867_SNP [dm3] 3L_4611867_SNP [dm6]	A	G	4.716e^-4	0.924	INTRON Src64B
X	17629357	X_17629357_SNP [dm3] X_17735324_SNP [dm6]	A	G	4.723e^-4	0.924	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1870501	X_1870501_SNP [dm3] X_1976468_SNP [dm6]	T	G	4.727e^-4	0.924	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19949107	3R_19949107_SNP [dm3] 3R_24123385_SNP [dm6]	C	T	4.728e^-4	0.924	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
3R	9686515	3R_9686515_SNP [dm3] 3R_13860793_SNP [dm6]	T	G	4.731e^-4	0.924	INTERGENIC
3L	8484775	3L_8484775_SNP [dm3] 3L_8491675_SNP [dm6]	G	T	4.734e^-4	0.924	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3055574	X_3055574_SNP [dm3] X_3161541_SNP [dm6]	C	A	4.746e^-4	0.924	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25114370	3R_25114370_SNP [dm3] 3R_29288648_SNP [dm6]	G	A	4.749e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18854462	3R_18854462_SNP [dm3] 3R_23028740_SNP [dm6]	A	T	4.750e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2951300	3L_2951300_SNP [dm3] 3L_2951300_SNP [dm6]	T	C	4.752e^-4	0.924	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
3L	3630213	3L_3630213_SNP [dm3] 3L_3630213_SNP [dm6]	G	C	4.755e^-4	0.924	INTRON dar1
2L	8445030	2L_8445030_SNP [dm3] 2L_8445030_SNP [dm6]	C	T	4.758e^-4	0.924	SYNONYMOUS_CODING CG31897 DOWNSTREAM U26
3R	27069079	3R_27069079_SNP [dm3] 3R_31243357_SNP [dm6]	A	C	4.761e^-4	0.924	INTRON qless
2R	16092814	2R_16092814_SNP [dm3] 2R_20205309_SNP [dm6]	C	A	4.779e^-4	0.924	INTERGENIC
X	4669830	X_4669830_SNP [dm3] X_4775797_SNP [dm6]	A	G	4.782e^-4	0.924	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8541680	2R_8541680_SNP [dm3] 2R_12654175_SNP [dm6]	A	T	4.785e^-4	0.924	SYNONYMOUS_CODING ZnT49B
2L	916147	2L_916147_SNP [dm3] 2L_916147_SNP [dm6]	C	T	4.801e^-4	0.924	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	7253898	2L_7253898_SNP [dm3] 2L_7253898_SNP [dm6]	G	T	4.805e^-4	0.924	UPSTREAM CG13786 INTERGENIC
X	16096849	X_16096849_DEL [dm3] X_16202816_DEL [dm6]	TT	C	4.809e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22030394	2L_22030394_SNP [dm3] 2L_22030394_SNP [dm6]	C	T	4.812e^-4	0.924	INTERGENIC
X	10120340	X_10120340_SNP [dm3] X_10226307_SNP [dm6]	T	C	4.812e^-4	0.924	SYNONYMOUS_CODING CG34408 UPSTREAM CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
2L	4983589	2L_4983589_SNP [dm3] 2L_4983589_SNP [dm6]	C	T	4.813e^-4	0.924	INTRON CG34126	TF binding site mE1_TFBS_chinmo
2R	16824651	2R_16824651_SNP [dm3] 2R_20937146_SNP [dm6]	C	T	4.814e^-4	0.924	DOWNSTREAM Rx INTERGENIC
X	3231201	X_3231201_DEL [dm3] X_3337168_DEL [dm6]	TCATTT	T	4.819e^-4	0.924	INTRON CR44886 & 1 other
3L	2319501	3L_2319501_INS [dm3] 3L_2319501_INS [dm6]	T	TT	4.824e^-4	0.924	EXON CR45426
2L	5332914	2L_5332914_SNP [dm3] 2L_5332914_SNP [dm6]	G	A	4.827e^-4	0.924	INTRON fusl	TF binding site mE1_TFBS_cad
2R	6564408	2R_6564408_DEL [dm3] 2R_10676903_DEL [dm6]	TT	T	4.840e^-4	0.924	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4909852	3L_4909852_SNP [dm3] 3L_4909852_SNP [dm6]	A	G	4.842e^-4	0.924	UPSTREAM Rh50 INTERGENIC
2L	7417157	2L_7417157_SNP [dm3] 2L_7417157_SNP [dm6]	G	A	4.852e^-4	0.924	INTRON chm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25482191	3R_25482191_SNP [dm3] 3R_29656469_SNP [dm6]	G	A	4.855e^-4	0.924	INTRON Dop1R2
X	17228433	X_17228433_SNP [dm3] X_17334400_SNP [dm6]	G	A	4.861e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18019933	2R_18019933_SNP [dm3] 2R_22132428_SNP [dm6]	G	A	4.866e^-4	0.924	INTERGENIC
3R	15606763	3R_15606763_SNP [dm3] 3R_19781041_SNP [dm6]	T	A	4.875e^-4	0.924	UPSTREAM CG11407 DOWNSTREAM CG11391 INTERGENIC
2L	13845173	2L_13845173_SNP [dm3] 2L_13845173_SNP [dm6]	A	G	4.876e^-4	0.924	INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad
2R	17740582	2R_17740582_SNP [dm3] 2R_21853077_SNP [dm6]	T	G	4.884e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9350092	2L_9350092_SNP [dm3] 2L_9350092_SNP [dm6]	G	A	4.887e^-4	0.924	UPSTREAM CR44802 & 1 other DOWNSTREAM CG43350 INTERGENIC
2L	4202143	2L_4202143_SNP [dm3] 2L_4202143_SNP [dm6]	C	T	4.892e^-4	0.924	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4909314	3L_4909314_SNP [dm3] 3L_4909314_SNP [dm6]	C	T	4.904e^-4	0.924	INTERGENIC
2L	9773943	2L_9773943_SNP [dm3] 2L_9773943_SNP [dm6]	A	G	4.926e^-4	0.924	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
3L	2178774	3L_2178774_SNP [dm3] 3L_2178774_SNP [dm6]	G	C	4.927e^-4	0.924	INTERGENIC
2L	9967880	2L_9967880_SNP [dm3] 2L_9967880_SNP [dm6]	A	G	4.931e^-4	0.924	SPLICE_SITE_REGION RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	2923071	X_2923071_DEL [dm3] X_3029038_DEL [dm6]	TT	T	4.933e^-4	0.924	INTRON kirre
2R	17296008	2R_17296008_SNP [dm3] 2R_21408503_SNP [dm6]	T	A	4.937e^-4	0.924	INTRON Sdc
2L	6225330	2L_6225330_SNP [dm3] 2L_6225330_SNP [dm6]	T	C	4.938e^-4	0.924	SYNONYMOUS_CODING Ugt37b1	TF binding site mE1_TFBS_sens
3R	11464733	3R_11464733_SNP [dm3] 3R_15639011_SNP [dm6]	T	G	4.939e^-4	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24641136	3R_24641136_SNP [dm3] 3R_28815414_SNP [dm6]	C	T	4.953e^-4	0.924	SYNONYMOUS_CODING CG1646 UTR_3_PRIME CG1646	TF binding site mE1_TFBS_cad
3R	16908560	3R_16908560_SNP [dm3] 3R_21082838_SNP [dm6]	A	G	4.960e^-4	0.924	DOWNSTREAM RhoGAP93B INTERGENIC
2L	1317243	2L_1317243_SNP [dm3] 2L_1317243_SNP [dm6]	T	A	4.964e^-4	0.924	INTERGENIC
3L	18543702	3L_18543702_SNP [dm3] 3L_18550602_SNP [dm6]	C	T	4.969e^-4	0.924	INTERGENIC
X	15356587	X_15356587_SNP [dm3] X_15462554_SNP [dm6]	C	T	4.987e^-4	0.924	UPSTREAM CG6299 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	21561447	3R_21561447_INS [dm3] 3R_25735725_INS [dm6]	G	AAT	4.988e^-4	0.924	INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17609497	2L_17609497_SNP [dm3] 2L_17609497_SNP [dm6]	A	T	4.994e^-4	0.924	INTERGENIC
X	1870100	X_1870100_SNP [dm3] X_1976067_SNP [dm6]	C	T	5.001e^-4	0.924	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	9306385	3L_9306385_SNP [dm3] 3L_9313285_SNP [dm6]	A	G	5.015e^-4	0.924	INTERGENIC
X	5290050	X_5290050_SNP [dm3] X_5396017_SNP [dm6]	A	C	5.018e^-4	0.924	INTRON SK
2L	21138675	2L_21138675_SNP [dm3] 2L_21138675_SNP [dm6]	C	A	5.023e^-4	0.924	INTRON Dap160	TF binding site mE1_TFBS_cad
2L	21169598	2L_21169598_SNP [dm3] 2L_21169598_SNP [dm6]	A	T	5.023e^-4	0.924	INTRON Acon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
3L	17190529	3L_17190529_SNP [dm3] 3L_17197429_SNP [dm6]	G	A	5.034e^-4	0.924	INTRON Rbp6
3L	12580005	3L_12580005_SNP [dm3] 3L_12586905_SNP [dm6]	C	A	5.046e^-4	0.924	INTRON ara
3L	22638161	3L_22638161_SNP [dm3] 3L_22645061_SNP [dm6]	A	T	5.047e^-4	0.924	UPSTREAM CG33766 DOWNSTREAM CR45381 INTERGENIC
2L	6482282	2L_6482282_SNP [dm3] 2L_6482282_SNP [dm6]	G	C	5.051e^-4	0.924	NON_SYNONYMOUS_CODING DLP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	1010879	3R_1010879_SNP [dm3] 3R_5185157_SNP [dm6]	C	A	5.056e^-4	0.924	INTRON cno
3R	12146909	3R_12146909_SNP [dm3] 3R_16321187_SNP [dm6]	G	A	5.066e^-4	0.924	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
2R	8244869	2R_8244869_SNP [dm3] 2R_12357364_SNP [dm6]	G	T	5.072e^-4	0.924	NON_SYNONYMOUS_CODING CG30049
X	11951571	X_11951571_SNP [dm3] X_12057538_SNP [dm6]	C	T	5.079e^-4	0.924	UPSTREAM Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13716788	X_13716788_SNP [dm3] X_13822755_SNP [dm6]	C	T	5.084e^-4	0.924	UPSTREAM Nup93-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13901619	X_13901619_SNP [dm3] X_14007586_SNP [dm6]	A	C	5.089e^-4	0.924	INTERGENIC
X	14878874	X_14878874_SNP [dm3] X_14984841_SNP [dm6]	T	A	5.111e^-4	0.924	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21003924	2L_21003924_SNP [dm3] 2L_21003924_SNP [dm6]	G	A	5.115e^-4	0.924	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	6750279	3R_6750279_SNP [dm3] 3R_10924557_SNP [dm6]	T	G	5.117e^-4	0.924	INTERGENIC
2L	22299412	2L_22299412_SNP [dm3] 2L_22299412_SNP [dm6]	T	C	5.121e^-4	0.924	INTERGENIC	transposable element FlyBase
2L	4016371	2L_4016371_DEL [dm3] 2L_4016371_DEL [dm6]	TG	T	5.128e^-4	0.924	INTERGENIC
X	6296900	X_6296900_INS [dm3] X_6402867_INS [dm6]	C	CTC	5.133e^-4	0.924	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.546e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1818 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4204708	2L_4204708_SNP [dm3] 2L_4204708_SNP [dm6]	G	A	8.178e^-7	0.827	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	26445172	3R_26445172_SNP [dm3] 3R_30619450_SNP [dm6]	A	G	2.381e^-6	0.827	INTRON CG44954
2L	7991298	2L_7991298_SNP [dm3] 2L_7991298_SNP [dm6]	G	C	2.488e^-6	0.827	INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26445695	3R_26445695_SNP [dm3] 3R_30619973_SNP [dm6]	C	T	3.124e^-6	0.827	INTRON CG44954
3R	26445192	3R_26445192_SNP [dm3] 3R_30619470_SNP [dm6]	T	G	3.266e^-6	0.827	INTRON CG44954
3L	1694363	3L_1694363_SNP [dm3] 3L_1694363_SNP [dm6]	C	T	3.962e^-6	0.827	UPSTREAM CG12011 INTRON CG7991
3L	10223327	3L_10223327_SNP [dm3] 3L_10230227_SNP [dm6]	G	T	4.611e^-6	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26445066	3R_26445066_SNP [dm3] 3R_30619344_SNP [dm6]	A	G	5.109e^-6	0.827	UTR_5_PRIME CG44954
3R	26445040	3R_26445040_SNP [dm3] 3R_30619318_SNP [dm6]	T	C	5.379e^-6	0.827	UTR_5_PRIME CG44954
3R	26445794	3R_26445794_SNP [dm3] 3R_30620072_SNP [dm6]	T	G	5.810e^-6	0.827	INTRON CG44954
3L	10223243	3L_10223243_SNP [dm3] 3L_10230143_SNP [dm6]	T	C	6.702e^-6	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26445805	3R_26445805_DEL [dm3] 3R_30620083_DEL [dm6]	ATTTTCTCA	A	7.028e^-6	0.827	INTRON CG44954
2L	10166251	2L_10166251_SNP [dm3] 2L_10166251_SNP [dm6]	A	G	7.577e^-6	0.827	INTRON CG44153
3R	26445193	3R_26445193_SNP [dm3] 3R_30619471_SNP [dm6]	G	T	7.647e^-6	0.827	INTRON CG44954
3R	26442008	3R_26442008_SNP [dm3] 3R_30616286_SNP [dm6]	G	C	7.728e^-6	0.827	DOWNSTREAM CR45571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26444986	3R_26444986_SNP [dm3] 3R_30619264_SNP [dm6]	G	A	8.017e^-6	0.827	START_GAINED CG44954 UTR_5_PRIME CG44954
3R	8896862	3R_8896862_SNP [dm3] 3R_13071140_SNP [dm6]	A	G	8.194e^-6	0.827	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26452232	3R_26452232_SNP [dm3] 3R_30626510_SNP [dm6]	A	G	8.680e^-6	0.827	UPSTREAM CR44136 DOWNSTREAM CG2267 INTERGENIC
3L	10223216	3L_10223216_SNP [dm3] 3L_10230116_SNP [dm6]	T	A	8.977e^-6	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	12773030	3L_12773030_INS [dm3] 3L_12779930_INS [dm6]	T	TTGTGGCTGTTGCAAGCAAG...	9.605e^-6	0.827	CODON_INSERTION CG10969	TF binding site mE1_TFBS_sens
3R	26445259	3R_26445259_SNP [dm3] 3R_30619537_SNP [dm6]	T	C	1.108e^-5	0.827	INTRON CG44954
3L	15115352	3L_15115352_SNP [dm3] 3L_15122252_SNP [dm6]	G	T	1.113e^-5	0.827	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	26445623	3R_26445623_SNP [dm3] 3R_30619901_SNP [dm6]	G	A	1.194e^-5	0.827	INTRON CG44954
3R	26445146	3R_26445146_SNP [dm3] 3R_30619424_SNP [dm6]	C	A	1.236e^-5	0.827	INTRON CG44954
3R	6376975	3R_6376975_SNP [dm3] 3R_10551253_SNP [dm6]	C	T	1.237e^-5	0.827	INTRON hth	TF binding site mE1_TFBS_inv
2L	4202143	2L_4202143_SNP [dm3] 2L_4202143_SNP [dm6]	C	T	1.295e^-5	0.827	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	347601	X_347601_SNP [dm3] X_453568_SNP [dm6]	T	A	1.344e^-5	0.827	INTRON CG32816	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14164798	3L_14164798_SNP [dm3] 3L_14171698_SNP [dm6]	C	T	1.368e^-5	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10189127	3L_10189127_SNP [dm3] 3L_10196027_SNP [dm6]	A	G	1.428e^-5	0.827	INTRON ect
3L	10223192	3L_10223192_SNP [dm3] 3L_10230092_SNP [dm6]	T	A	1.467e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	8141149	2L_8141149_SNP [dm3] 2L_8141149_SNP [dm6]	A	T	1.524e^-5	0.827	DOWNSTREAM mir-4984 INTRON CG8552
3L	10223238	3L_10223238_SNP [dm3] 3L_10230138_SNP [dm6]	C	A	1.543e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	18203987	3L_18203987_SNP [dm3] 3L_18210887_SNP [dm6]	G	A	1.601e^-5	0.827	INTERGENIC
3R	6373854	3R_6373854_SNP [dm3] 3R_10548132_SNP [dm6]	G	C	1.698e^-5	0.827	INTRON hth
X	18309162	X_18309162_SNP [dm3] X_18415129_SNP [dm6]	T	C	1.722e^-5	0.827	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase
3R	13107651	3R_13107651_SNP [dm3] 3R_17281929_SNP [dm6]	T	C	1.733e^-5	0.827	INTERGENIC
X	5374135	X_5374135_INS [dm3] X_5480102_INS [dm6]	GC	AACA	1.753e^-5	0.827	INTRON SPR
3R	26445751	3R_26445751_SNP [dm3] 3R_30620029_SNP [dm6]	G	T	1.755e^-5	0.827	INTRON CG44954
2R	12271121	2R_12271121_SNP [dm3] 2R_16383616_SNP [dm6]	A	G	1.764e^-5	0.827	UTR_3_PRIME CG43187
2L	14830744	2L_14830744_SNP [dm3] 2L_14830744_SNP [dm6]	G	T	1.786e^-5	0.827	INTERGENIC
3R	26445781	3R_26445781_SNP [dm3] 3R_30620059_SNP [dm6]	G	T	1.821e^-5	0.827	INTRON CG44954
3R	6376711	3R_6376711_DEL [dm3] 3R_10550989_DEL [dm6]	TT	T	1.980e^-5	0.827	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14830762	2L_14830762_SNP [dm3] 2L_14830762_SNP [dm6]	T	G	2.049e^-5	0.827	INTERGENIC
3R	26445785	3R_26445785_SNP [dm3] 3R_30620063_SNP [dm6]	G	T	2.074e^-5	0.827	INTRON CG44954
3R	6374480	3R_6374480_SNP [dm3] 3R_10548758_SNP [dm6]	C	T	2.099e^-5	0.827	INTRON hth
3R	26445151	3R_26445151_SNP [dm3] 3R_30619429_SNP [dm6]	G	C	2.111e^-5	0.827	INTRON CG44954
2L	17244148	2L_17244148_SNP [dm3] 2L_17244148_SNP [dm6]	C	G	2.135e^-5	0.827	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da
2L	7775872	2L_7775872_SNP [dm3] 2L_7775872_SNP [dm6]	G	A	2.235e^-5	0.827	UTR_3_PRIME CG7179 DOWNSTREAM CG7191	TF binding site mE1_TFBS_cad
2L	7775874	2L_7775874_SNP [dm3] 2L_7775874_SNP [dm6]	T	A	2.235e^-5	0.827	UTR_3_PRIME CG7179 DOWNSTREAM CG7191	TF binding site mE1_TFBS_cad
2L	7775875	2L_7775875_SNP [dm3] 2L_7775875_SNP [dm6]	G	A	2.235e^-5	0.827	UTR_3_PRIME CG7179 DOWNSTREAM CG7191	TF binding site mE1_TFBS_cad
3R	6374524	3R_6374524_SNP [dm3] 3R_10548802_SNP [dm6]	A	C	2.335e^-5	0.827	INTRON hth
3R	26445758	3R_26445758_SNP [dm3] 3R_30620036_SNP [dm6]	T	A	2.336e^-5	0.827	INTRON CG44954
X	347667	X_347667_SNP [dm3] X_453634_SNP [dm6]	T	G	2.338e^-5	0.827	INTRON CG32816	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14830775	2L_14830775_SNP [dm3] 2L_14830775_SNP [dm6]	A	G	2.390e^-5	0.829	INTERGENIC
2R	19497193	2R_19497193_SNP [dm3] 2R_23609670_SNP [dm6]	C	G	2.463e^-5	0.829	UPSTREAM CG4019 INTRON CG17664 & 1 other
2L	14830759	2L_14830759_SNP [dm3] 2L_14830759_SNP [dm6]	T	A	2.506e^-5	0.829	INTERGENIC
2R	10704291	2R_10704291_SNP [dm3] 2R_14816786_SNP [dm6]	C	T	2.623e^-5	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	347616	X_347616_SNP [dm3] X_453583_SNP [dm6]	G	A	2.640e^-5	0.829	INTRON CG32816	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	13308923	3L_13308923_SNP [dm3] 3L_13315823_SNP [dm6]	G	A	2.700e^-5	0.829	INTERGENIC
2R	17775943	2R_17775943_SNP [dm3] 2R_21888438_SNP [dm6]	A	T	2.701e^-5	0.829	INTRON Fili
2R	18663760	2R_18663760_DEL [dm3] 2R_22776255_DEL [dm6]	ACACAACA	A	2.706e^-5	0.829	INTRON CG42260
X	15087191	X_15087191_SNP [dm3] X_15193158_SNP [dm6]	C	T	2.740e^-5	0.829	INTERGENIC
3R	26445396	3R_26445396_SNP [dm3] 3R_30619674_SNP [dm6]	G	A	2.938e^-5	0.863	INTRON CG44954
3R	6376681	3R_6376681_SNP [dm3] 3R_10550959_SNP [dm6]	G	A	3.031e^-5	0.863	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26447024	3R_26447024_SNP [dm3] 3R_30621302_SNP [dm6]	G	C	3.069e^-5	0.863	INTRON CG44954
3L	15889394	3L_15889394_SNP [dm3] 3L_15896294_SNP [dm6]	A	G	3.092e^-5	0.863	INTRON pHCl
3R	6698766	3R_6698766_SNP [dm3] 3R_10873044_SNP [dm6]	A	G	3.119e^-5	0.863	UTR_5_PRIME CG4596 UPSTREAM Fdh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7156048	2L_7156048_SNP [dm3] 2L_7156048_SNP [dm6]	G	A	3.137e^-5	0.863	SYNONYMOUS_CODING Pvf3	TF binding site mE1_TFBS_sens
2L	4203643	2L_4203643_SNP [dm3] 2L_4203643_SNP [dm6]	A	T	3.177e^-5	0.863	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	4202149	2L_4202149_SNP [dm3] 2L_4202149_SNP [dm6]	C	T	3.240e^-5	0.868	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26445580	3R_26445580_SNP [dm3] 3R_30619858_SNP [dm6]	A	C	3.324e^-5	0.878	INTRON CG44954
3L	5958808	3L_5958808_SNP [dm3] 3L_5965708_SNP [dm6]	G	C	3.418e^-5	0.88	INTERGENIC
2L	6797703	2L_6797703_SNP [dm3] 2L_6797703_SNP [dm6]	G	C	3.426e^-5	0.88	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26445137	3R_26445137_SNP [dm3] 3R_30619415_SNP [dm6]	T	C	3.487e^-5	0.88	INTRON CG44954
3L	10201130	3L_10201130_SNP [dm3] 3L_10208030_SNP [dm6]	G	A	3.553e^-5	0.88	INTERGENIC
3L	1986883	3L_1986883_SNP [dm3] 3L_1986883_SNP [dm6]	A	G	3.574e^-5	0.88	INTERGENIC
2L	4202151	2L_4202151_SNP [dm3] 2L_4202151_SNP [dm6]	A	G	3.624e^-5	0.88	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	11006259	3L_11006259_SNP [dm3] 3L_11013159_SNP [dm6]	T	C	3.697e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6688814	2L_6688814_SNP [dm3] 2L_6688814_SNP [dm6]	A	G	3.811e^-5	0.88	SYNONYMOUS_CODING Tsp DOWNSTREAM Tsp	TF binding site mE1_TFBS_cad
3R	26010163	3R_26010163_SNP [dm3] 3R_30184441_SNP [dm6]	C	T	3.815e^-5	0.88	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
2L	6508126	2L_6508126_SNP [dm3] 2L_6508126_SNP [dm6]	T	C	3.831e^-5	0.88	INTRON CG31637 EXON CR44775
2L	17640391	2L_17640391_SNP [dm3] 2L_17640391_SNP [dm6]	G	T	3.849e^-5	0.88	INTERGENIC
2R	6619671	2R_6619671_SNP [dm3] 2R_10732166_SNP [dm6]	C	G	3.917e^-5	0.883	UPSTREAM CG12338 & 1 other INTRON CG7220
2L	16504282	2L_16504282_SNP [dm3] 2L_16504282_SNP [dm6]	G	A	3.956e^-5	0.883	INTRON Tpr2
2L	14830718	2L_14830718_SNP [dm3] 2L_14830718_SNP [dm6]	G	T	4.050e^-5	0.889	INTERGENIC
3R	26453582	3R_26453582_SNP [dm3] 3R_30627860_SNP [dm6]	T	C	4.075e^-5	0.889	SYNONYMOUS_CODING CG2267
3R	4437585	3R_4437585_SNP [dm3] 3R_8611863_SNP [dm6]	T	G	4.123e^-5	0.889	INTRON 5-HT2B
2L	18436389	2L_18436389_SNP [dm3] 2L_18436389_SNP [dm6]	T	C	4.199e^-5	0.895	INTERGENIC
X	13634681	X_13634681_SNP [dm3] X_13740648_SNP [dm6]	G	A	4.283e^-5	0.903	INTRON Grip91 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15115377	3L_15115377_SNP [dm3] 3L_15122277_SNP [dm6]	A	T	4.340e^-5	0.904	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	15115373	3L_15115373_DEL [dm3] 3L_15122273_DEL [dm6]	ATG	A	4.400e^-5	0.907	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	14384719	2R_14384719_SNP [dm3] 2R_18497214_SNP [dm6]	G	A	4.456e^-5	0.908	INTRON CG30116
3R	8885712	3R_8885712_SNP [dm3] 3R_13059990_SNP [dm6]	C	A	4.680e^-5	0.944	INTRON sim	TF binding site BDTNP1_TFBS_prd
X	5176650	X_5176650_SNP [dm3] X_5282617_SNP [dm6]	G	A	4.832e^-5	0.959	INTERGENIC
2L	13911890	2L_13911890_SNP [dm3] 2L_13911890_SNP [dm6]	A	G	4.859e^-5	0.959	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	21735412	3L_21735412_SNP [dm3] 3L_21742312_SNP [dm6]	G	A	5.106e^-5	0.995	NON_SYNONYMOUS_CODING CG14572 DOWNSTREAM CG14565	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	13308961	3L_13308961_SNP [dm3] 3L_13315861_SNP [dm6]	T	A	5.173e^-5	0.995	INTERGENIC
X	8799358	X_8799358_SNP [dm3] X_8905325_SNP [dm6]	A	G	5.242e^-5	0.995	SYNONYMOUS_CODING e_r_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3693627	2L_3693627_SNP [dm3] 2L_3693627_SNP [dm6]	G	A	5.320e^-5	0.995	SYNONYMOUS_CODING Acp24A4 UPSTREAM CG3513 DOWNSTREAM CR43364 & 1 other
3R	20928500	3R_20928500_SNP [dm3] 3R_25102778_SNP [dm6]	C	T	5.447e^-5	0.995	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG33095 & 2 others
3R	1101562	3R_1101562_SNP [dm3] 3R_5275840_SNP [dm6]	G	A	5.456e^-5	0.995	UTR_3_PRIME CG31538 INTRON mtd	TF binding site mE1_TFBS_cad
3R	26445122	3R_26445122_SNP [dm3] 3R_30619400_SNP [dm6]	T	C	5.500e^-5	0.995	INTRON CG44954
2L	12967719	2L_12967719_SNP [dm3] 2L_12967719_SNP [dm6]	C	A	5.503e^-5	0.995	SYNONYMOUS_CODING CG16800
2R	17877958	2R_17877958_SNP [dm3] 2R_21990453_SNP [dm6]	A	G	5.583e^-5	0.995	INTRON CG34370
2L	18012454	2L_18012454_SNP [dm3] 2L_18012454_SNP [dm6]	T	G	5.646e^-5	0.995	UTR_5_PRIME rdo UPSTREAM elfless
X	17697880	X_17697880_SNP [dm3] X_17803847_SNP [dm6]	T	C	5.790e^-5	0.995	INTRON OdsH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	26445017	3R_26445017_SNP [dm3] 3R_30619295_SNP [dm6]	G	A	5.796e^-5	0.995	UTR_5_PRIME CG44954
3R	10284727	3R_10284727_SNP [dm3] 3R_14459005_SNP [dm6]	G	T	5.821e^-5	0.995	INTRON cv-c
2L	14888641	2L_14888641_SNP [dm3] 2L_14888641_SNP [dm6]	G	T	5.835e^-5	0.995	INTERGENIC
3R	26443163	3R_26443163_SNP [dm3] 3R_30617441_SNP [dm6]	G	A	5.861e^-5	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6764307	2L_6764307_SNP [dm3] 2L_6764307_SNP [dm6]	C	T	5.899e^-5	0.995	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	14846356	2L_14846356_SNP [dm3] 2L_14846356_SNP [dm6]	T	G	5.987e^-5	0.995	SYNONYMOUS_CODING CG15279
2L	4202008	2L_4202008_SNP [dm3] 2L_4202008_SNP [dm6]	G	A	6.078e^-5	0.995	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
X	384683	X_384683_SNP [dm3] X_490650_SNP [dm6]	A	C	6.112e^-5	0.995	UTR_3_PRIME CG3156 DOWNSTREAM CG17896
2L	4200389	2L_4200389_SNP [dm3] 2L_4200389_SNP [dm6]	G	T	6.114e^-5	0.995	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1810182	3R_1810182_SNP [dm3] 3R_5984460_SNP [dm6]	C	T	6.152e^-5	0.995	INTERGENIC
2R	7456136	2R_7456136_SNP [dm3] 2R_11568631_SNP [dm6]	C	A	6.204e^-5	0.995	INTERGENIC
3R	20483192	3R_20483192_SNP [dm3] 3R_24657470_SNP [dm6]	C	T	6.438e^-5	0.998	INTRON CG6695
3R	26445645	3R_26445645_SNP [dm3] 3R_30619923_SNP [dm6]	A	G	6.449e^-5	0.998	INTRON CG44954
3L	13551254	3L_13551254_SNP [dm3] 3L_13558154_SNP [dm6]	A	G	6.480e^-5	0.998	DOWNSTREAM CR45178 INTRON bru-3
3R	8898185	3R_8898185_SNP [dm3] 3R_13072463_SNP [dm6]	C	T	6.658e^-5	0.998	UTR_5_PRIME sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2777420	2R_2777420_SNP [dm3] 2R_6889915_SNP [dm6]	T	C	6.670e^-5	0.998	INTERGENIC
2R	13955684	2R_13955684_SNP [dm3] 2R_18068179_SNP [dm6]	G	A	6.770e^-5	0.998	INTRON CG34386
3R	25114574	3R_25114574_SNP [dm3] 3R_29288852_SNP [dm6]	T	G	6.793e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	7186790	2L_7186790_SNP [dm3] 2L_7186790_SNP [dm6]	G	T	6.997e^-5	0.998	INTRON CG4496	TF binding site mE1_TFBS_HSA
3R	1787160	3R_1787160_SNP [dm3] 3R_5961438_SNP [dm6]	A	G	7.105e^-5	0.998	UPSTREAM CG11373 INTERGENIC
2L	8229890	2L_8229890_SNP [dm3] 2L_8229890_SNP [dm6]	C	A	7.139e^-5	0.998	INTRON Pvr
2L	17651545	2L_17651545_SNP [dm3] 2L_17651545_SNP [dm6]	G	A	7.300e^-5	0.998	INTRON CadN
2L	18436406	2L_18436406_SNP [dm3] 2L_18436406_SNP [dm6]	T	C	7.425e^-5	0.998	INTERGENIC
3R	26445460	3R_26445460_SNP [dm3] 3R_30619738_SNP [dm6]	G	C	7.449e^-5	0.998	INTRON CG44954
2L	14864900	2L_14864900_SNP [dm3] 2L_14864900_SNP [dm6]	G	A	7.518e^-5	0.998	INTERGENIC
X	18309172	X_18309172_SNP [dm3] X_18415139_SNP [dm6]	C	T	7.523e^-5	0.998	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase
2L	17626287	2L_17626287_SNP [dm3] 2L_17626287_SNP [dm6]	G	A	7.533e^-5	0.998	START_GAINED CG15147 UTR_5_PRIME CG15147 UPSTREAM CR44413
3L	10101676	3L_10101676_SNP [dm3] 3L_10108576_SNP [dm6]	G	T	7.540e^-5	0.998	INTRON dpr6
3L	5662933	3L_5662933_SNP [dm3] 3L_5669833_SNP [dm6]	C	A	7.673e^-5	0.998	INTRON sif
2L	6920548	2L_6920548_SNP [dm3] 2L_6920548_SNP [dm6]	T	A	7.753e^-5	0.998	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8852524	3L_8852524_SNP [dm3] 3L_8859424_SNP [dm6]	A	T	7.907e^-5	0.998	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	19198223	2R_19198223_SNP [dm3] 2R_23310700_SNP [dm6]	T	G	7.995e^-5	0.998	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	1777380	3R_1777380_SNP [dm3] 3R_5951658_SNP [dm6]	T	C	8.035e^-5	0.998	INTRON CG34113
3R	26442742	3R_26442742_DEL [dm3] 3R_30617020_DEL [dm6]	AA	C	8.066e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17388404	3R_17388404_SNP [dm3] 3R_21562682_SNP [dm6]	C	G	8.105e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	20928490	3R_20928490_SNP [dm3] 3R_25102768_SNP [dm6]	T	A	8.201e^-5	0.998	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG33095 & 2 others
X	20359131	X_20359131_SNP [dm3] X_20488104_SNP [dm6]	C	A	8.255e^-5	0.998	INTRON RhoGAP19D
3L	12967188	3L_12967188_SNP [dm3] 3L_12974088_SNP [dm6]	C	T	8.365e^-5	0.998	DOWNSTREAM CG10749 INTERGENIC
2L	7186944	2L_7186944_SNP [dm3] 2L_7186944_SNP [dm6]	T	C	8.383e^-5	0.998	SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
2L	17661386	2L_17661386_SNP [dm3] 2L_17661386_SNP [dm6]	T	C	8.568e^-5	0.998	SYNONYMOUS_CODING CadN	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13345056	3L_13345056_SNP [dm3] 3L_13351956_SNP [dm6]	A	T	8.575e^-5	0.998	SYNONYMOUS_CODING CG17687
X	10087986	X_10087986_SNP [dm3] X_10193953_SNP [dm6]	T	A	8.643e^-5	0.998	UTR_3_PRIME CG43902 INTRON CR44894
3L	9424922	3L_9424922_DEL [dm3] 3L_9431822_DEL [dm6]	CC	C	8.909e^-5	0.998	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7186827	2L_7186827_SNP [dm3] 2L_7186827_SNP [dm6]	C	A	8.915e^-5	0.998	SPLICE_SITE_REGION CG4496 INTRON CG4496	TF binding site mE1_TFBS_HSA
3R	20483064	3R_20483064_SNP [dm3] 3R_24657342_SNP [dm6]	C	T	8.918e^-5	0.998	SYNONYMOUS_CODING CG6695
3L	15936795	3L_15936795_SNP [dm3] 3L_15943695_SNP [dm6]	G	C	8.947e^-5	0.998	INTRON Pka-C3
2R	6609552	2R_6609552_SNP [dm3] 2R_10722047_SNP [dm6]	T	C	9.050e^-5	0.998	UTR_3_PRIME Rab3 DOWNSTREAM stan
3L	4698138	3L_4698138_SNP [dm3] 3L_4698138_SNP [dm6]	C	A	9.301e^-5	0.998	DOWNSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	384833	X_384833_SNP [dm3] X_490800_SNP [dm6]	G	A	9.305e^-5	0.998	UTR_3_PRIME CG17896 DOWNSTREAM CG3156
3L	4478885	3L_4478885_SNP [dm3] 3L_4478885_SNP [dm6]	G	C	9.308e^-5	0.998	INTERGENIC
2R	7886348	2R_7886348_SNP [dm3] 2R_11998843_SNP [dm6]	A	G	9.390e^-5	0.998	INTERGENIC
3L	4422164	3L_4422164_SNP [dm3] 3L_4422164_SNP [dm6]	C	A	9.430e^-5	0.998	UTR_5_PRIME CG15020
2R	17761965	2R_17761965_INS [dm3] 2R_21874460_INS [dm6]	A	ATGTA	9.438e^-5	0.998	INTRON Fili	TF binding site BDTNP1_TFBS_da
X	12158364	X_12158364_SNP [dm3] X_12264331_SNP [dm6]	T	G	9.595e^-5	0.998	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17640388	2L_17640388_SNP [dm3] 2L_17640388_SNP [dm6]	T	C	9.615e^-5	0.998	INTERGENIC
3L	12910124	3L_12910124_SNP [dm3] 3L_12917024_SNP [dm6]	G	A	9.618e^-5	0.998	INTERGENIC
2L	11935271	2L_11935271_SNP [dm3] 2L_11935271_SNP [dm6]	A	G	9.625e^-5	0.998	UPSTREAM Or33b INTRON Or33a
2L	17626289	2L_17626289_SNP [dm3] 2L_17626289_SNP [dm6]	G	A	9.638e^-5	0.998	START_GAINED CG15147 UTR_5_PRIME CG15147 UPSTREAM CR44413
3L	5024150	3L_5024150_SNP [dm3] 3L_5024150_SNP [dm6]	G	A	9.666e^-5	0.998	INTRON Con
2L	4454945	2L_4454945_SNP [dm3] 2L_4454945_SNP [dm6]	C	T	9.668e^-5	0.998	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26442807	3R_26442807_SNP [dm3] 3R_30617085_SNP [dm6]	T	C	9.783e^-5	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5502132	2R_5502132_SNP [dm3] 2R_9614627_SNP [dm6]	G	T	9.834e^-5	0.998	INTRON CR44069 & 1 other
2R	6619608	2R_6619608_SNP [dm3] 2R_10732103_SNP [dm6]	C	T	9.869e^-5	0.998	UPSTREAM CG12338 & 1 other INTRON CG7220	TF binding site mE1_TFBS_sens
3L	4422556	3L_4422556_SNP [dm3] 3L_4422556_SNP [dm6]	A	C	9.970e^-5	0.998	INTRON CG15020
3L	12829588	3L_12829588_SNP [dm3] 3L_12836488_SNP [dm6]	G	A	1.011e^-4	0.998	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9129037	2R_9129037_SNP [dm3] 2R_13241532_SNP [dm6]	T	A	1.012e^-4	0.998	DOWNSTREAM GstE14 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	11980194	2R_11980194_SNP [dm3] 2R_16092689_SNP [dm6]	A	G	1.024e^-4	0.998	INTRON Dg
3R	20928498	3R_20928498_SNP [dm3] 3R_25102776_SNP [dm6]	A	T	1.031e^-4	0.998	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG33095 & 2 others
X	8799370	X_8799370_SNP [dm3] X_8905337_SNP [dm6]	C	T	1.033e^-4	0.998	SYNONYMOUS_CODING e_r_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4202742	2L_4202742_SNP [dm3] 2L_4202742_SNP [dm6]	T	C	1.035e^-4	0.998	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2L	6764263	2L_6764263_SNP [dm3] 2L_6764263_SNP [dm6]	C	T	1.036e^-4	0.998	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	14874080	2L_14874080_SNP [dm3] 2L_14874080_SNP [dm6]	A	G	1.045e^-4	0.998	DOWNSTREAM CG15278 INTERGENIC
2R	7127614	2R_7127614_SNP [dm3] 2R_11240109_SNP [dm6]	G	A	1.051e^-4	0.998	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
2L	6797739	2L_6797739_SNP [dm3] 2L_6797739_SNP [dm6]	T	G	1.062e^-4	0.998	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18131248	2L_18131248_SNP [dm3] 2L_18131248_SNP [dm6]	A	T	1.063e^-4	0.998	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4198779	2L_4198779_DEL [dm3] 2L_4198779_DEL [dm6]	TT	T	1.065e^-4	0.998	UTR_3_PRIME ft UPSTREAM CG3714
3L	4401333	3L_4401333_SNP [dm3] 3L_4401333_SNP [dm6]	T	A	1.070e^-4	0.998	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17682067	2R_17682067_SNP [dm3] 2R_21794562_SNP [dm6]	T	G	1.071e^-4	0.998	INTERGENIC
2L	6248476	2L_6248476_SNP [dm3] 2L_6248476_SNP [dm6]	C	T	1.071e^-4	0.998	INTERGENIC
X	8142600	X_8142600_SNP [dm3] X_8248567_SNP [dm6]	T	A	1.072e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
X	8142562	X_8142562_SNP [dm3] X_8248529_SNP [dm6]	C	A	1.072e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	4163968	2L_4163968_SNP [dm3] 2L_4163968_SNP [dm6]	T	C	1.076e^-4	0.998	DOWNSTREAM Or24a INTERGENIC
2L	15321027	2L_15321027_DEL [dm3] 2L_15321027_DEL [dm6]	GAACCATGG	G	1.077e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20436021	3L_20436021_SNP [dm3] 3L_20442921_SNP [dm6]	C	T	1.086e^-4	0.998	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21107369	3R_21107369_SNP [dm3] 3R_25281647_SNP [dm6]	A	G	1.091e^-4	0.998	UPSTREAM CG11892 INTRON CG11892
2L	8140582	2L_8140582_SNP [dm3] 2L_8140582_SNP [dm6]	G	A	1.112e^-4	0.998	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552 DOWNSTREAM mir-4984	TF binding site mE1_TFBS_cad
2L	14874079	2L_14874079_SNP [dm3] 2L_14874079_SNP [dm6]	A	C	1.119e^-4	0.998	DOWNSTREAM CG15278 INTERGENIC
2L	14861836	2L_14861836_SNP [dm3] 2L_14861836_SNP [dm6]	G	A	1.127e^-4	0.998	INTERGENIC
X	384836	X_384836_SNP [dm3] X_490803_SNP [dm6]	T	A	1.127e^-4	0.998	UTR_3_PRIME CG17896 DOWNSTREAM CG3156
2R	17365371	2R_17365371_SNP [dm3] 2R_21477866_SNP [dm6]	T	A	1.133e^-4	0.998	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6371722	3R_6371722_SNP [dm3] 3R_10546000_SNP [dm6]	C	G	1.136e^-4	0.998	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7010637	2L_7010637_SNP [dm3] 2L_7010637_SNP [dm6]	G	A	1.138e^-4	0.998	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	10106363	3L_10106363_SNP [dm3] 3L_10113263_SNP [dm6]	T	A	1.140e^-4	0.998	UTR_3_PRIME dpr6 INTRON dpr6
3R	20128199	3R_20128199_SNP [dm3] 3R_24302477_SNP [dm6]	G	T	1.141e^-4	0.998	INTRON crb
3L	4478886	3L_4478886_SNP [dm3] 3L_4478886_SNP [dm6]	C	A	1.145e^-4	0.998	INTERGENIC
3L	4476488	3L_4476488_SNP [dm3] 3L_4476488_SNP [dm6]	G	T	1.161e^-4	0.998	INTERGENIC
3L	1442022	3L_1442022_INS [dm3] 3L_1442022_INS [dm6]	G	GAG	1.161e^-4	0.998	INTRON Ptp61F
2L	7157284	2L_7157284_SNP [dm3] 2L_7157284_SNP [dm6]	T	G	1.167e^-4	0.998	UTR_5_PRIME Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1694752	3L_1694752_SNP [dm3] 3L_1694752_SNP [dm6]	G	A	1.169e^-4	0.998	SYNONYMOUS_CODING CG12011 INTRON CG7991
3R	26452675	3R_26452675_DEL [dm3] 3R_30626953_DEL [dm6]	ACTGA	A	1.173e^-4	0.998	DOWNSTREAM CG2267 INTERGENIC
2L	13911871	2L_13911871_SNP [dm3] 2L_13911871_SNP [dm6]	C	A	1.174e^-4	0.998	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16502366	2L_16502366_SNP [dm3] 2L_16502366_SNP [dm6]	C	T	1.191e^-4	0.998	INTRON Tpr2
2L	15125956	2L_15125956_SNP [dm3] 2L_15125956_SNP [dm6]	A	G	1.198e^-4	0.998	INTERGENIC
3R	25114638	3R_25114638_SNP [dm3] 3R_29288916_SNP [dm6]	A	G	1.201e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6950497	3R_6950497_SNP [dm3] 3R_11124775_SNP [dm6]	G	C	1.216e^-4	0.998	INTERGENIC
3L	16280890	3L_16280890_SNP [dm3] 3L_16287790_SNP [dm6]	A	G	1.223e^-4	0.998	SYNONYMOUS_CODING CG13046
X	10748626	X_10748626_SNP [dm3] X_10854593_SNP [dm6]	C	T	1.230e^-4	0.998	SYNONYMOUS_CODING feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19977028	2L_19977028_SNP [dm3] 2L_19977028_SNP [dm6]	G	A	1.248e^-4	0.998	INTRON CG43861
3L	19502939	3L_19502939_SNP [dm3] 3L_19509839_SNP [dm6]	T	G	1.249e^-4	0.998	INTERGENIC
X	12374543	X_12374543_SNP [dm3] X_12480510_SNP [dm6]	C	A	1.251e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4165952	2L_4165952_SNP [dm3] 2L_4165952_SNP [dm6]	G	T	1.255e^-4	0.998	SYNONYMOUS_CODING Or24a
X	8142514	X_8142514_SNP [dm3] X_8248481_SNP [dm6]	T	C	1.256e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	5251680	2L_5251680_SNP [dm3] 2L_5251680_SNP [dm6]	A	G	1.256e^-4	0.998	INTRON tkv
X	8142664	X_8142664_SNP [dm3] X_8248631_SNP [dm6]	G	A	1.257e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	6797732	2L_6797732_SNP [dm3] 2L_6797732_SNP [dm6]	A	T	1.257e^-4	0.998	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14886299	2L_14886299_SNP [dm3] 2L_14886299_SNP [dm6]	T	C	1.258e^-4	0.998	DOWNSTREAM CR45302 INTERGENIC	insulator Insulator_Class_II.mE01
2L	6764204	2L_6764204_SNP [dm3] 2L_6764204_SNP [dm6]	T	C	1.262e^-4	0.998	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	13326023	2L_13326023_SNP [dm3] 2L_13326023_SNP [dm6]	C	A	1.267e^-4	0.998	INTRON CG43778
2R	17759617	2R_17759617_SNP [dm3] 2R_21872112_SNP [dm6]	C	A	1.275e^-4	0.998	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15248685	2R_15248685_SNP [dm3] 2R_19361180_SNP [dm6]	C	G	1.276e^-4	0.998	SYNONYMOUS_CODING CG11961
3R	6672092	3R_6672092_SNP [dm3] 3R_10846370_SNP [dm6]	G	A	1.280e^-4	0.998	SYNONYMOUS_CODING Cad86C UTR_3_PRIME Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26442117	3R_26442117_INS [dm3] 3R_30616395_INS [dm6]	C	CC	1.281e^-4	0.998	DOWNSTREAM CR45571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19181597	2R_19181597_SNP [dm3] 2R_23294074_SNP [dm6]	A	G	1.285e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22435831	2L_22435831_SNP [dm3] 2L_22543099_SNP [dm6]	G	A	1.292e^-4	0.998	INTRON CG17490
2L	14888217	2L_14888217_SNP [dm3] 2L_14888217_SNP [dm6]	T	G	1.296e^-4	0.998	INTERGENIC
3R	8375580	3R_8375580_DEL [dm3] 3R_12549858_DEL [dm6]	AA	A	1.298e^-4	0.998	DOWNSTREAM Octbeta2R INTERGENIC
3L	13345776	3L_13345776_SNP [dm3] 3L_13352676_SNP [dm6]	A	C	1.302e^-4	0.998	SYNONYMOUS_CODING CG17687
3R	26444269	3R_26444269_SNP [dm3] 3R_30618547_SNP [dm6]	T	C	1.306e^-4	0.998	DOWNSTREAM CG44954 INTERGENIC
X	4481828	X_4481828_SNP [dm3] X_4587795_SNP [dm6]	G	A	1.308e^-4	0.998	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14846009	2L_14846009_SNP [dm3] 2L_14846009_SNP [dm6]	C	T	1.313e^-4	0.998	NON_SYNONYMOUS_CODING CG15279
2L	14891188	2L_14891188_SNP [dm3] 2L_14891188_SNP [dm6]	C	A	1.345e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18221352	X_18221352_SNP [dm3] X_18327319_SNP [dm6]	G	A	1.347e^-4	0.998	SYNONYMOUS_CODING CG6123	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7128613	2R_7128613_SNP [dm3] 2R_11241108_SNP [dm6]	C	T	1.358e^-4	0.998	UPSTREAM CG13215 DOWNSTREAM Listericin INTERGENIC
3R	22994155	3R_22994155_SNP [dm3] 3R_27168433_SNP [dm6]	C	G	1.361e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs
3R	12327378	3R_12327378_SNP [dm3] 3R_16501656_SNP [dm6]	A	T	1.362e^-4	0.998	UPSTREAM decay INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	22392693	3L_22392693_SNP [dm3] 3L_22399593_SNP [dm6]	G	A	1.366e^-4	0.998	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_inv
3R	15453127	3R_15453127_SNP [dm3] 3R_19627405_SNP [dm6]	G	A	1.379e^-4	0.998	INTRON CG6231
2L	11935559	2L_11935559_SNP [dm3] 2L_11935559_SNP [dm6]	A	G	1.386e^-4	0.998	NON_SYNONYMOUS_CODING Or33a UPSTREAM Or33b
2R	14549056	2R_14549056_SNP [dm3] 2R_18661551_SNP [dm6]	C	T	1.390e^-4	0.998	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14884735	2L_14884735_SNP [dm3] 2L_14884735_SNP [dm6]	A	T	1.402e^-4	0.998	UPSTREAM CR45302 INTERGENIC
2R	6626080	2R_6626080_SNP [dm3] 2R_10738575_SNP [dm6]	G	T	1.408e^-4	0.998	DOWNSTREAM Mat1 & 1 other INTERGENIC
2L	14857803	2L_14857803_SNP [dm3] 2L_14857803_SNP [dm6]	C	T	1.429e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	6619431	2R_6619431_SNP [dm3] 2R_10731926_SNP [dm6]	A	G	1.431e^-4	0.998	UPSTREAM CG12338 & 1 other INTRON CG7220	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17639810	2L_17639810_SNP [dm3] 2L_17639810_SNP [dm6]	T	C	1.441e^-4	0.998	INTERGENIC
2R	11852046	2R_11852046_SNP [dm3] 2R_15964541_SNP [dm6]	A	G	1.441e^-4	0.998	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14886275	2L_14886275_SNP [dm3] 2L_14886275_SNP [dm6]	G	C	1.457e^-4	0.998	DOWNSTREAM CR45302 INTERGENIC
2L	14885308	2L_14885308_SNP [dm3] 2L_14885308_SNP [dm6]	C	T	1.466e^-4	0.998	EXON CR45302
2L	14517162	2L_14517162_SNP [dm3] 2L_14517162_SNP [dm6]	G	A	1.470e^-4	0.998	UPSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4480837	3L_4480837_SNP [dm3] 3L_4480837_SNP [dm6]	T	C	1.472e^-4	0.998	NON_SYNONYMOUS_CODING CG7465	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26441920	3R_26441920_SNP [dm3] 3R_30616198_SNP [dm6]	T	C	1.473e^-4	0.998	DOWNSTREAM CR45571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6694701	3R_6694701_SNP [dm3] 3R_10868979_SNP [dm6]	G	C	1.475e^-4	0.998	UTR_5_PRIME Tsp86D UPSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16502391	2L_16502391_INS [dm3] 2L_16502391_INS [dm6]	A	TATTTG	1.475e^-4	0.998	INTRON Tpr2
2L	3895120	2L_3895120_SNP [dm3] 2L_3895120_SNP [dm6]	G	C	1.476e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	3895123	2L_3895123_SNP [dm3] 2L_3895123_SNP [dm6]	T	C	1.476e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	14884737	2L_14884737_DEL [dm3] 2L_14884737_DEL [dm6]	CAAACTGTCAAGAGG...	C	1.478e^-4	0.998	UPSTREAM CR45302 INTERGENIC
3L	14226828	3L_14226828_SNP [dm3] 3L_14233728_SNP [dm6]	C	T	1.481e^-4	0.998	SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13344708	3L_13344708_SNP [dm3] 3L_13351608_SNP [dm6]	T	G	1.486e^-4	0.998	SYNONYMOUS_CODING CG17687
2L	14871784	2L_14871784_SNP [dm3] 2L_14871784_SNP [dm6]	C	A	1.495e^-4	0.998	INTRON CG4480
2L	17641270	2L_17641270_SNP [dm3] 2L_17641270_SNP [dm6]	A	T	1.496e^-4	0.998	INTERGENIC
2L	17507099	2L_17507099_SNP [dm3] 2L_17507099_SNP [dm6]	T	C	1.500e^-4	0.998	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2L	7775759	2L_7775759_SNP [dm3] 2L_7775759_SNP [dm6]	T	A	1.501e^-4	0.998	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	14907230	2L_14907230_SNP [dm3] 2L_14907230_SNP [dm6]	A	T	1.506e^-4	0.998	DOWNSTREAM CG42313 INTERGENIC
2R	2465409	2R_2465409_SNP [dm3] 2R_6577904_SNP [dm6]	C	T	1.508e^-4	0.998	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3895309	2L_3895309_SNP [dm3] 2L_3895309_SNP [dm6]	G	T	1.511e^-4	0.998	INTRON capu
X	10748670	X_10748670_SNP [dm3] X_10854637_SNP [dm6]	T	A	1.512e^-4	0.998	UTR_5_PRIME feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14850970	2L_14850970_SNP [dm3] 2L_14850970_SNP [dm6]	C	T	1.526e^-4	0.998	INTRON CG15279
3R	17057261	3R_17057261_SNP [dm3] 3R_21231539_SNP [dm6]	G	A	1.528e^-4	0.998	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad
3L	14227628	3L_14227628_SNP [dm3] 3L_14234528_SNP [dm6]	C	T	1.531e^-4	0.998	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
X	16547893	X_16547893_SNP [dm3] X_16653860_SNP [dm6]	A	G	1.534e^-4	0.998	NON_SYNONYMOUS_CODING CG9723 DOWNSTREAM CG32573 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13345650	3L_13345650_SNP [dm3] 3L_13352550_SNP [dm6]	G	A	1.536e^-4	0.998	SYNONYMOUS_CODING CG17687
2L	9842508	2L_9842508_SNP [dm3] 2L_9842508_SNP [dm6]	A	T	1.536e^-4	0.998	INTRON nAChRalpha6
3R	1796857	3R_1796857_SNP [dm3] 3R_5971135_SNP [dm6]	A	T	1.564e^-4	0.998	DOWNSTREAM CR44926 INTERGENIC
3R	20959746	3R_20959746_SNP [dm3] 3R_25134024_SNP [dm6]	C	A	1.575e^-4	0.998	INTRON Bili
2L	14884907	2L_14884907_SNP [dm3] 2L_14884907_SNP [dm6]	T	C	1.584e^-4	0.998	UPSTREAM CR45302 INTERGENIC
2L	5791475	2L_5791475_SNP [dm3] 2L_5791475_SNP [dm6]	C	A	1.592e^-4	0.998	INTRON CG9171
3L	4722599	3L_4722599_SNP [dm3] 3L_4722599_SNP [dm6]	A	C	1.607e^-4	0.998	INTRON RhoGEF64C
2L	14909456	2L_14909456_SNP [dm3] 2L_14909456_SNP [dm6]	C	T	1.607e^-4	0.998	INTRON CG42313
X	7355521	X_7355521_SNP [dm3] X_7461488_SNP [dm6]	C	T	1.607e^-4	0.998	UPSTREAM CR44500 INTERGENIC
3L	10632248	3L_10632248_SNP [dm3] 3L_10639148_SNP [dm6]	C	T	1.609e^-4	0.998	UPSTREAM CG18628 INTRON CG8009
3L	4103170	3L_4103170_SNP [dm3] 3L_4103170_SNP [dm6]	A	T	1.610e^-4	0.998	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14344262	2L_14344262_SNP [dm3] 2L_14344262_SNP [dm6]	G	A	1.619e^-4	0.998	SYNONYMOUS_CODING CG33090
2L	6764289	2L_6764289_SNP [dm3] 2L_6764289_SNP [dm6]	A	T	1.624e^-4	0.998	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	22534631	2L_22534631_SNP [dm3] 2L_22641899_SNP [dm6]	A	T	1.655e^-4	0.998	INTRON CG40006
3L	15115387	3L_15115387_SNP [dm3] 3L_15122287_SNP [dm6]	T	C	1.663e^-4	0.998	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	10106205	3L_10106205_SNP [dm3] 3L_10113105_SNP [dm6]	G	T	1.666e^-4	0.998	INTRON dpr6
3R	2165266	3R_2165266_SNP [dm3] 3R_6339544_SNP [dm6]	T	C	1.671e^-4	0.998	UPSTREAM Osi20 INTERGENIC
3R	25337775	3R_25337775_SNP [dm3] 3R_29512053_SNP [dm6]	A	T	1.681e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5354586	3L_5354586_SNP [dm3] 3L_5361486_SNP [dm6]	C	A	1.684e^-4	0.998	SPLICE_SITE_REGION CG4769 INTRON CG4769	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	6376740	3R_6376740_SNP [dm3] 3R_10551018_SNP [dm6]	C	T	1.687e^-4	0.998	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7972256	2L_7972256_SNP [dm3] 2L_7972256_SNP [dm6]	G	T	1.687e^-4	0.998	INTRON Snoo
3L	23199405	3L_23199405_SNP [dm3] 3L_23206305_SNP [dm6]	A	T	1.690e^-4	0.998	UPSTREAM nAChRalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	7775749	2L_7775749_SNP [dm3] 2L_7775749_SNP [dm6]	C	G	1.705e^-4	0.998	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	15374370	2L_15374370_SNP [dm3] 2L_15374370_SNP [dm6]	T	C	1.708e^-4	0.998	INTERGENIC
2R	317811	2R_317811_SNP [dm3] 2R_4430306_SNP [dm6]	C	A	1.716e^-4	0.998	INTRON Gprk1	TF binding site mE1_TFBS_cad
2L	16504230	2L_16504230_SNP [dm3] 2L_16504230_SNP [dm6]	C	A	1.718e^-4	0.998	INTRON Tpr2
2L	4197904	2L_4197904_SNP [dm3] 2L_4197904_SNP [dm6]	G	A	1.721e^-4	0.998	UTR_5_PRIME CG3714 UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7886247	2R_7886247_DEL [dm3] 2R_11998742_DEL [dm6]	GG	G	1.722e^-4	0.998	INTERGENIC
2L	14929039	2L_14929039_SNP [dm3] 2L_14929039_SNP [dm6]	G	A	1.725e^-4	0.998	SYNONYMOUS_CODING CG3491 INTRON CG42313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15012617	3L_15012617_SNP [dm3] 3L_15019517_SNP [dm6]	A	G	1.728e^-4	0.998	INTRON Sytbeta	TF binding site mE1_TFBS_cad
2L	11815400	2L_11815400_SNP [dm3] 2L_11815400_SNP [dm6]	G	A	1.729e^-4	0.998	UTR_3_PRIME Pde1c DOWNSTREAM Pde1c
2L	3895126	2L_3895126_MNP [dm3] 2L_3895126_MNP [dm6]	ATTA	TACT	1.732e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3R	13555318	3R_13555318_SNP [dm3] 3R_17729596_SNP [dm6]	T	A	1.734e^-4	0.998	INTRON Lgr1
2R	19385159	2R_19385159_SNP [dm3] 2R_23497636_SNP [dm6]	A	C	1.742e^-4	0.998	INTERGENIC
2L	9847456	2L_9847456_SNP [dm3] 2L_9847456_SNP [dm6]	A	G	1.755e^-4	0.998	UPSTREAM CR43766 INTRON nAChRalpha6
2R	10570073	2R_10570073_SNP [dm3] 2R_14682568_SNP [dm6]	A	T	1.756e^-4	0.998	INTRON mspo
2L	6764306	2L_6764306_SNP [dm3] 2L_6764306_SNP [dm6]	C	A	1.762e^-4	0.998	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2R	19181638	2R_19181638_SNP [dm3] 2R_23294115_SNP [dm6]	A	C	1.773e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17048124	3R_17048124_SNP [dm3] 3R_21222402_SNP [dm6]	C	A	1.778e^-4	0.998	SYNONYMOUS_CODING Oga DOWNSTREAM CG3337	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	6708245	3R_6708245_SNP [dm3] 3R_10882523_SNP [dm6]	A	G	1.782e^-4	0.998	UTR_3_PRIME CG14696 UPSTREAM Tpc1	TF binding site mE1_TFBS_Ubx
2L	4338861	2L_4338861_SNP [dm3] 2L_4338861_SNP [dm6]	T	C	1.784e^-4	0.998	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14789737	3R_14789737_INS [dm3] 3R_18964015_INS [dm6]	C	CG	1.790e^-4	0.998	INTRON CG42613 & 1 other
X	20359316	X_20359316_SNP [dm3] X_20488289_SNP [dm6]	T	A	1.792e^-4	0.998	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	13008940	3L_13008940_SNP [dm3] 3L_13015840_SNP [dm6]	T	A	1.794e^-4	0.998	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	17641254	2L_17641254_SNP [dm3] 2L_17641254_SNP [dm6]	G	A	1.795e^-4	0.998	INTERGENIC
2L	5963000	2L_5963000_SNP [dm3] 2L_5963000_SNP [dm6]	G	T	1.804e^-4	0.998	DOWNSTREAM psd INTERGENIC
3L	9808774	3L_9808774_SNP [dm3] 3L_9815674_SNP [dm6]	G	T	1.810e^-4	0.998	UPSTREAM CG43897 INTRON CG43897
3R	2031021	3R_2031021_SNP [dm3] 3R_6205299_SNP [dm6]	T	C	1.814e^-4	0.998	INTRON Osi24
3L	1660485	3L_1660485_SNP [dm3] 3L_1660485_SNP [dm6]	T	G	1.820e^-4	0.998	DOWNSTREAM CG7971 INTRON CG7971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14915522	2L_14915522_SNP [dm3] 2L_14915522_SNP [dm6]	C	G	1.840e^-4	0.998	INTRON CG42313
2L	4200392	2L_4200392_SNP [dm3] 2L_4200392_SNP [dm6]	A	T	1.842e^-4	0.998	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7796669	2L_7796669_SNP [dm3] 2L_7796669_SNP [dm6]	T	C	1.856e^-4	0.998	UTR_3_PRIME Herp UPSTREAM LKR DOWNSTREAM CR44825
3L	1837237	3L_1837237_SNP [dm3] 3L_1837237_SNP [dm6]	C	T	1.856e^-4	0.998	INTERGENIC
2L	19611224	2L_19611224_SNP [dm3] 2L_19611224_SNP [dm6]	T	C	1.859e^-4	0.998	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
3L	10203819	3L_10203819_SNP [dm3] 3L_10210719_SNP [dm6]	A	T	1.866e^-4	0.998	INTERGENIC
2L	17651430	2L_17651430_SNP [dm3] 2L_17651430_SNP [dm6]	A	G	1.869e^-4	0.998	SYNONYMOUS_CODING CadN
2L	17608389	2L_17608389_SNP [dm3] 2L_17608389_SNP [dm6]	A	C	1.872e^-4	0.998	INTERGENIC
2L	14856291	2L_14856291_SNP [dm3] 2L_14856291_SNP [dm6]	T	C	1.880e^-4	0.998	INTERGENIC
3R	18088509	3R_18088509_SNP [dm3] 3R_22262787_SNP [dm6]	C	T	1.889e^-4	0.998	INTRON SKIP
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	1.890e^-4	0.998	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	1704382	3L_1704382_SNP [dm3] 3L_1704382_SNP [dm6]	T	A	1.900e^-4	0.998	INTRON CG7991
3L	14235094	3L_14235094_SNP [dm3] 3L_14241994_SNP [dm6]	G	A	1.901e^-4	0.998	INTERGENIC
3L	4698235	3L_4698235_SNP [dm3] 3L_4698235_SNP [dm6]	T	G	1.903e^-4	0.998	DOWNSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18020243	2L_18020243_SNP [dm3] 2L_18020243_SNP [dm6]	G	C	1.905e^-4	0.998	INTRON rdo
3R	6692399	3R_6692399_SNP [dm3] 3R_10866677_SNP [dm6]	G	A	1.910e^-4	0.998	SYNONYMOUS_CODING SelR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11165999	2L_11165999_SNP [dm3] 2L_11165999_SNP [dm6]	C	T	1.924e^-4	0.998	INTRON Ca-beta
2L	14846709	2L_14846709_SNP [dm3] 2L_14846709_SNP [dm6]	A	G	1.931e^-4	0.998	INTRON CG15279
2L	14850469	2L_14850469_DEL [dm3] 2L_14850469_DEL [dm6]	GATTTCCCCGCGGCATG...	CAAAAAA	1.931e^-4	0.998	INTRON CG15279
3R	20545359	3R_20545359_SNP [dm3] 3R_24719637_SNP [dm6]	C	G	1.932e^-4	0.998	UPSTREAM tok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14942948	2L_14942948_SNP [dm3] 2L_14942948_SNP [dm6]	T	A	1.940e^-4	0.998	INTRON CG42313
X	7355592	X_7355592_SNP [dm3] X_7461559_SNP [dm6]	T	G	1.942e^-4	0.998	UPSTREAM CR44500 INTERGENIC
2L	17651219	2L_17651219_SNP [dm3] 2L_17651219_SNP [dm6]	C	A	1.946e^-4	0.998	INTRON CadN
3L	3695601	3L_3695601_SNP [dm3] 3L_3695601_SNP [dm6]	C	T	1.948e^-4	0.998	INTERGENIC
2L	6797745	2L_6797745_SNP [dm3] 2L_6797745_SNP [dm6]	A	T	1.953e^-4	0.998	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5861832	2L_5861832_INS [dm3] 2L_5861832_INS [dm6]	A	AAGATA	1.969e^-4	0.998	INTRON rau
3L	13317695	3L_13317695_SNP [dm3] 3L_13324595_SNP [dm6]	A	C	1.982e^-4	0.998	EXON CR44558
3R	20483043	3R_20483043_SNP [dm3] 3R_24657321_SNP [dm6]	G	A	1.987e^-4	0.998	SYNONYMOUS_CODING CG6695
3L	13309038	3L_13309038_INS [dm3] 3L_13315938_INS [dm6]	T	TCTTACAATAT...	1.994e^-4	0.998	INTERGENIC
2L	13911315	2L_13911315_SNP [dm3] 2L_13911315_SNP [dm6]	A	C	2.002e^-4	0.998	UPSTREAM Acyp INTRON Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14917801	2L_14917801_SNP [dm3] 2L_14917801_SNP [dm6]	G	A	2.006e^-4	0.998	INTRON CG42313
3L	15890634	3L_15890634_SNP [dm3] 3L_15897534_SNP [dm6]	T	C	2.011e^-4	0.998	INTRON pHCl
3L	4480835	3L_4480835_SNP [dm3] 3L_4480835_SNP [dm6]	A	T	2.012e^-4	0.998	SYNONYMOUS_CODING CG7465	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13328917	X_13328917_SNP [dm3] X_13434884_SNP [dm6]	C	A	2.016e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14860513	2L_14860513_SNP [dm3] 2L_14860513_SNP [dm6]	A	G	2.017e^-4	0.998	INTERGENIC
2L	3895293	2L_3895293_SNP [dm3] 2L_3895293_SNP [dm6]	T	A	2.019e^-4	0.998	INTRON capu
3R	20486878	3R_20486878_SNP [dm3] 3R_24661156_SNP [dm6]	C	T	2.022e^-4	0.998	SYNONYMOUS_CODING Ppox DOWNSTREAM CG31126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6764272	2L_6764272_SNP [dm3] 2L_6764272_SNP [dm6]	C	G	2.033e^-4	0.998	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
X	15107452	X_15107452_SNP [dm3] X_15213419_SNP [dm6]	G	A	2.036e^-4	0.998	INTERGENIC
2L	12125626	2L_12125626_SNP [dm3] 2L_12125626_SNP [dm6]	A	G	2.037e^-4	0.998	SYNONYMOUS_CODING CG17211
2L	14855707	2L_14855707_SNP [dm3] 2L_14855707_SNP [dm6]	A	G	2.037e^-4	0.998	INTERGENIC
2L	7171880	2L_7171880_SNP [dm3] 2L_7171880_SNP [dm6]	A	G	2.046e^-4	0.998	INTERGENIC
X	11753012	X_11753012_SNP [dm3] X_11858979_SNP [dm6]	T	G	2.048e^-4	0.998	INTRON ATP7	TF binding site mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA
2L	14899519	2L_14899519_SNP [dm3] 2L_14899519_SNP [dm6]	T	A	2.057e^-4	0.998	INTERGENIC
2L	14892299	2L_14892299_SNP [dm3] 2L_14892299_SNP [dm6]	A	C	2.058e^-4	0.998	INTERGENIC
X	385204	X_385204_SNP [dm3] X_491171_SNP [dm6]	C	T	2.062e^-4	0.998	SYNONYMOUS_CODING CG17896 DOWNSTREAM CG3156
3L	10191010	3L_10191010_SNP [dm3] 3L_10197910_SNP [dm6]	G	T	2.063e^-4	0.998	INTRON ect
2L	4163203	2L_4163203_SNP [dm3] 2L_4163203_SNP [dm6]	G	T	2.069e^-4	0.998	INTERGENIC
2L	3895119	2L_3895119_SNP [dm3] 2L_3895119_SNP [dm6]	A	T	2.070e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3L	13417610	3L_13417610_SNP [dm3] 3L_13424510_SNP [dm6]	G	T	2.075e^-4	0.998	UPSTREAM CG33263 DOWNSTREAM CG14106 INTERGENIC
3L	6110878	3L_6110878_SNP [dm3] 3L_6117778_SNP [dm6]	C	T	2.079e^-4	0.998	INTRON Ets65A
3L	1660508	3L_1660508_SNP [dm3] 3L_1660508_SNP [dm6]	G	T	2.081e^-4	0.998	DOWNSTREAM CG7971 INTRON CG7971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10087963	X_10087963_SNP [dm3] X_10193930_SNP [dm6]	T	A	2.092e^-4	0.998	UTR_3_PRIME CG43902 INTRON CR44894
X	5365982	X_5365982_SNP [dm3] X_5471949_SNP [dm6]	T	C	2.096e^-4	0.998	INTRON SPR
3L	9260825	3L_9260825_INS [dm3] 3L_9267725_INS [dm6]	T	TTTTCATGCAT...	2.102e^-4	0.998	INTRON GluRIB
3L	10223304	3L_10223304_SNP [dm3] 3L_10230204_SNP [dm6]	T	G	2.105e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1975951	2L_1975951_SNP [dm3] 2L_1975951_SNP [dm6]	C	A	2.117e^-4	0.998	UTR_3_PRIME CG15356 DOWNSTREAM Der-1	TF binding site BDTNP1_TFBS_z
3L	14805918	3L_14805918_SNP [dm3] 3L_14812818_SNP [dm6]	T	A	2.130e^-4	0.998	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3895178	2L_3895178_MNP [dm3] 2L_3895178_MNP [dm6]	TTA	AAT	2.131e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3R	6386736	3R_6386736_SNP [dm3] 3R_10561014_SNP [dm6]	T	C	2.137e^-4	0.998	INTRON hth
3R	16015825	3R_16015825_SNP [dm3] 3R_20190103_SNP [dm6]	C	T	2.141e^-4	0.998	INTERGENIC
2L	3895107	2L_3895107_INS [dm3] 2L_3895107_INS [dm6]	T	TGTAGAA	2.141e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2R	2777074	2R_2777074_SNP [dm3] 2R_6889569_SNP [dm6]	A	C	2.147e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18439166	2L_18439166_SNP [dm3] 2L_18439166_SNP [dm6]	G	C	2.152e^-4	0.998	INTERGENIC
3L	9808869	3L_9808869_SNP [dm3] 3L_9815769_SNP [dm6]	A	G	2.158e^-4	0.998	UPSTREAM CG43897 INTRON CG43897
X	8142539	X_8142539_INS [dm3] X_8248506_INS [dm6]	G	GTATG	2.159e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	15088837	2L_15088837_SNP [dm3] 2L_15088837_SNP [dm6]	A	C	2.171e^-4	0.998	INTRON CG15270
3L	13309042	3L_13309042_SNP [dm3] 3L_13315942_SNP [dm6]	G	T	2.173e^-4	0.998	INTERGENIC
3R	6659631	3R_6659631_SNP [dm3] 3R_10833909_SNP [dm6]	A	T	2.181e^-4	0.998	INTRON Cad86C	TF binding site mE1_TFBS_cad
2L	17507150	2L_17507150_SNP [dm3] 2L_17507150_SNP [dm6]	T	C	2.186e^-4	0.998	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
X	13375737	X_13375737_SNP [dm3] X_13481704_SNP [dm6]	A	C	2.188e^-4	0.998	INTRON Neto
2L	14871740	2L_14871740_SNP [dm3] 2L_14871740_SNP [dm6]	A	G	2.190e^-4	0.998	SYNONYMOUS_CODING CG4480
2L	3759125	2L_3759125_SNP [dm3] 2L_3759125_SNP [dm6]	C	T	2.202e^-4	0.998	SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 UPSTREAM CG43707
2R	12270790	2R_12270790_SNP [dm3] 2R_16383285_SNP [dm6]	A	T	2.208e^-4	0.998	UTR_3_PRIME CG43187	transposable element FlyBase
3L	22944544	3L_22944544_SNP [dm3] 3L_22951444_SNP [dm6]	A	T	2.217e^-4	0.998	UTR_3_PRIME Mes2
3L	10976805	3L_10976805_SNP [dm3] 3L_10983705_SNP [dm6]	A	G	2.231e^-4	0.998	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4381307	2R_4381307_SNP [dm3] 2R_8493802_SNP [dm6]	T	C	2.254e^-4	0.998	NON_SYNONYMOUS_CODING mtt INTRON mtt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6619961	2R_6619961_SNP [dm3] 2R_10732456_SNP [dm6]	A	G	2.254e^-4	0.998	UPSTREAM CG12338 & 1 other INTRON CG7220
3L	2557523	3L_2557523_SNP [dm3] 3L_2557523_SNP [dm6]	G	A	2.261e^-4	0.998	INTRON msn	TF binding site mE1_TFBS_sens
3R	26442698	3R_26442698_SNP [dm3] 3R_30616976_SNP [dm6]	G	A	2.264e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9808771	3L_9808771_SNP [dm3] 3L_9815671_SNP [dm6]	T	A	2.272e^-4	0.998	UPSTREAM CG43897 INTRON CG43897
2R	19181792	2R_19181792_SNP [dm3] 2R_23294269_SNP [dm6]	A	C	2.279e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14872295	2L_14872295_SNP [dm3] 2L_14872295_SNP [dm6]	G	T	2.281e^-4	0.998	UPSTREAM CG4480 INTERGENIC
X	9377937	X_9377937_SNP [dm3] X_9483904_SNP [dm6]	T	A	2.289e^-4	0.998	INTRON mgl
3L	4401258	3L_4401258_SNP [dm3] 3L_4401258_SNP [dm6]	A	T	2.297e^-4	0.998	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3895216	2L_3895216_SNP [dm3] 2L_3895216_SNP [dm6]	T	C	2.306e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3L	10632268	3L_10632268_DEL [dm3] 3L_10639168_DEL [dm6]	TGAAA	T	2.309e^-4	0.998	UPSTREAM CG18628 INTRON CG8009
2L	4338885	2L_4338885_SNP [dm3] 2L_4338885_SNP [dm6]	T	A	2.312e^-4	0.998	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3895172	2L_3895172_SNP [dm3] 2L_3895172_SNP [dm6]	T	A	2.314e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	3895182	2L_3895182_SNP [dm3] 2L_3895182_SNP [dm6]	A	G	2.314e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3R	6376029	3R_6376029_SNP [dm3] 3R_10550307_SNP [dm6]	C	T	2.316e^-4	0.998	INTRON hth
3L	9327138	3L_9327138_SNP [dm3] 3L_9334038_SNP [dm6]	A	T	2.321e^-4	0.998	UPSTREAM PGRP-LA INTERGENIC
3R	1777068	3R_1777068_SNP [dm3] 3R_5951346_SNP [dm6]	T	A	2.325e^-4	0.998	INTRON CG34113
3R	1777096	3R_1777096_SNP [dm3] 3R_5951374_SNP [dm6]	T	A	2.325e^-4	0.998	INTRON CG34113
2L	14893111	2L_14893111_SNP [dm3] 2L_14893111_SNP [dm6]	C	T	2.328e^-4	0.998	INTERGENIC
2L	14932789	2L_14932789_SNP [dm3] 2L_14932789_SNP [dm6]	A	T	2.330e^-4	0.998	INTRON CG42313
X	2669229	X_2669229_SNP [dm3] X_2775196_SNP [dm6]	T	A	2.341e^-4	0.998	INTRON kirre
2L	14908524	2L_14908524_SNP [dm3] 2L_14908524_SNP [dm6]	G	T	2.351e^-4	0.998	SYNONYMOUS_CODING CG42313
3L	4473740	3L_4473740_SNP [dm3] 3L_4473740_SNP [dm6]	A	C	2.362e^-4	0.998	SYNONYMOUS_CODING CG11349	TF binding site mE1_TFBS_chinmo
3R	26120843	3R_26120843_SNP [dm3] 3R_30295121_SNP [dm6]	G	T	2.366e^-4	0.998	INTRON hdc
2R	11823798	2R_11823798_SNP [dm3] 2R_15936293_SNP [dm6]	A	G	2.371e^-4	0.998	UTR_3_PRIME Mlf DOWNSTREAM Mlf & 1 other	TF binding site mE1_TFBS_HSA
X	347795	X_347795_SNP [dm3] X_453762_SNP [dm6]	T	C	2.373e^-4	0.998	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	389268	X_389268_DEL [dm3] X_495235_DEL [dm6]	CACATTG	A	2.380e^-4	0.998	INTRON CG17778	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12374671	X_12374671_SNP [dm3] X_12480638_SNP [dm6]	G	T	2.384e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17641292	2L_17641292_INS [dm3] 2L_17641292_INS [dm6]	A	ATTCCTAGAACGAGGAATAT...	2.386e^-4	0.998	INTERGENIC
3R	26444288	3R_26444288_SNP [dm3] 3R_30618566_SNP [dm6]	T	A	2.394e^-4	0.998	DOWNSTREAM CG44954 INTERGENIC
3L	899496	3L_899496_SNP [dm3] 3L_899496_SNP [dm6]	C	T	2.409e^-4	0.998	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	22397983	3L_22397983_SNP [dm3] 3L_22404883_SNP [dm6]	A	G	2.411e^-4	0.998	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	5592326	2L_5592326_SNP [dm3] 2L_5592326_SNP [dm6]	A	T	2.418e^-4	0.998	INTERGENIC
3L	22121192	3L_22121192_SNP [dm3] 3L_22128092_SNP [dm6]	C	T	2.419e^-4	0.998	INTERGENIC
X	5247955	X_5247955_SNP [dm3] X_5353922_SNP [dm6]	T	A	2.432e^-4	0.998	INTRON SK
3R	9412672	3R_9412672_SNP [dm3] 3R_13586950_SNP [dm6]	G	A	2.433e^-4	0.998	INTERGENIC
2R	19181585	2R_19181585_SNP [dm3] 2R_23294062_SNP [dm6]	T	A	2.436e^-4	0.998	INTERGENIC
2L	4131311	2L_4131311_SNP [dm3] 2L_4131311_SNP [dm6]	T	A	2.444e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7886293	2R_7886293_SNP [dm3] 2R_11998788_SNP [dm6]	T	C	2.454e^-4	0.998	INTERGENIC
3R	8731799	3R_8731799_DEL [dm3] 3R_12906077_DEL [dm6]	GCCTACCA	G	2.475e^-4	0.998	INTERGENIC
2L	14892484	2L_14892484_SNP [dm3] 2L_14892484_SNP [dm6]	C	T	2.475e^-4	0.998	INTERGENIC
3L	9808535	3L_9808535_SNP [dm3] 3L_9815435_SNP [dm6]	C	A	2.477e^-4	0.998	UPSTREAM CG43897 INTRON CG43897
2L	3895207	2L_3895207_INS [dm3] 2L_3895207_INS [dm6]	T	TGACGAGGTA	2.482e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3L	10200986	3L_10200986_SNP [dm3] 3L_10207886_SNP [dm6]	T	C	2.482e^-4	0.998	INTERGENIC
3R	17032137	3R_17032137_SNP [dm3] 3R_21206415_SNP [dm6]	A	G	2.490e^-4	0.998	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
3L	14805920	3L_14805920_SNP [dm3] 3L_14812820_SNP [dm6]	G	T	2.491e^-4	0.998	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14914941	2L_14914941_SNP [dm3] 2L_14914941_SNP [dm6]	G	A	2.506e^-4	0.998	INTRON CG42313
2L	3895124	2L_3895124_SNP [dm3] 2L_3895124_SNP [dm6]	G	C	2.510e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3L	5393387	3L_5393387_DEL [dm3] 3L_5400287_DEL [dm6]	GACTTAGC	G	2.519e^-4	0.998	INTERGENIC
X	16490608	X_16490608_SNP [dm3] X_16596575_SNP [dm6]	A	T	2.519e^-4	0.998	UTR_3_PRIME CG9784 DOWNSTREAM crl	TF binding site mE1_TFBS_cad
2L	14916488	2L_14916488_SNP [dm3] 2L_14916488_SNP [dm6]	A	T	2.529e^-4	0.998	INTRON CG42313
2L	3895133	2L_3895133_SNP [dm3] 2L_3895133_SNP [dm6]	A	C	2.537e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	6797736	2L_6797736_SNP [dm3] 2L_6797736_SNP [dm6]	T	G	2.540e^-4	0.998	UPSTREAM nrv2 INTRON nrv2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	13669991	X_13669991_DEL [dm3] X_13775958_DEL [dm6]	ACTCGATA	A	2.543e^-4	0.998	SPLICE_SITE_REGION rdgB DOWNSTREAM rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	11136272	3L_11136272_SNP [dm3] 3L_11143172_SNP [dm6]	A	C	2.557e^-4	0.998	INTRON CG32082
3L	9260763	3L_9260763_SNP [dm3] 3L_9267663_SNP [dm6]	G	C	2.568e^-4	0.998	INTRON GluRIB
3R	27217036	3R_27217036_DEL [dm3] 3R_31391314_DEL [dm6]	TGATT	T	2.577e^-4	0.998	UTR_3_PRIME CG1607 DOWNSTREAM CG31204
2R	14634072	2R_14634072_SNP [dm3] 2R_18746567_SNP [dm6]	G	A	2.582e^-4	0.998	INTRON Hs3st-A
3L	9727376	3L_9727376_SNP [dm3] 3L_9734276_SNP [dm6]	G	A	2.586e^-4	0.998	UTR_3_PRIME CG42268 UPSTREAM mir-4986 & 1 other
3R	18582762	3R_18582762_DEL [dm3] 3R_22757040_DEL [dm6]	AGATA	A	2.591e^-4	0.998	INTRON Usp12-46 & 1 other
2L	9670468	2L_9670468_SNP [dm3] 2L_9670468_SNP [dm6]	T	A	2.593e^-4	0.998	EXON CR44150
3R	6252057	3R_6252057_SNP [dm3] 3R_10426335_SNP [dm6]	T	G	2.594e^-4	0.998	INTERGENIC
2R	15074191	2R_15074191_DEL [dm3] 2R_19186686_DEL [dm6]	AG	A	2.596e^-4	0.998	INTRON hppy
2L	11815969	2L_11815969_SNP [dm3] 2L_11815969_SNP [dm6]	A	T	2.602e^-4	0.998	UTR_3_PRIME Pde1c DOWNSTREAM Pde1c
3L	5503819	3L_5503819_SNP [dm3] 3L_5510719_SNP [dm6]	T	G	2.615e^-4	0.998	INTRON CG34342
3L	10025546	3L_10025546_SNP [dm3] 3L_10032446_SNP [dm6]	C	T	2.628e^-4	0.998	INTRON dpr6
3L	17405942	3L_17405942_SNP [dm3] 3L_17412842_SNP [dm6]	T	C	2.630e^-4	0.998	INTRON blot	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22397761	3L_22397761_INS [dm3] 3L_22404661_INS [dm6]	T	GCTTTCGC	2.633e^-4	0.998	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26856056	3R_26856056_SNP [dm3] 3R_31030334_SNP [dm6]	G	C	2.636e^-4	0.998	INTERGENIC
X	17697834	X_17697834_INS [dm3] X_17803801_INS [dm6]	A	AGA	2.644e^-4	0.998	INTRON OdsH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12469164	3L_12469164_SNP [dm3] 3L_12476064_SNP [dm6]	C	T	2.649e^-4	0.998	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
3R	22285604	3R_22285604_SNP [dm3] 3R_26459882_SNP [dm6]	T	C	2.650e^-4	0.998	INTRON CG14238
3R	25139403	3R_25139403_SNP [dm3] 3R_29313681_SNP [dm6]	T	C	2.653e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	12773056	3L_12773056_SNP [dm3] 3L_12779956_SNP [dm6]	T	G	2.661e^-4	0.998	NON_SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
2R	17682023	2R_17682023_SNP [dm3] 2R_21794518_SNP [dm6]	T	A	2.676e^-4	0.998	INTERGENIC
3R	10039353	3R_10039353_SNP [dm3] 3R_14213631_SNP [dm6]	T	C	2.681e^-4	0.998	INTRON Dop1R1
3L	1694850	3L_1694850_SNP [dm3] 3L_1694850_SNP [dm6]	T	A	2.685e^-4	0.998	NON_SYNONYMOUS_CODING CG12011 INTRON CG7991
2L	14936971	2L_14936971_SNP [dm3] 2L_14936971_SNP [dm6]	G	T	2.699e^-4	0.998	INTRON CG42313
2L	14941264	2L_14941264_SNP [dm3] 2L_14941264_SNP [dm6]	A	T	2.699e^-4	0.998	INTRON CG42313
2L	4200509	2L_4200509_SNP [dm3] 2L_4200509_SNP [dm6]	A	C	2.701e^-4	0.998	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14939877	2L_14939877_SNP [dm3] 2L_14939877_SNP [dm6]	A	G	2.704e^-4	0.998	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	16509329	2L_16509329_SNP [dm3] 2L_16509329_SNP [dm6]	T	C	2.713e^-4	0.998	UTR_3_PRIME CG5953
3L	15757183	3L_15757183_SNP [dm3] 3L_15764083_SNP [dm6]	A	G	2.717e^-4	0.998	INTERGENIC
X	17927949	X_17927949_SNP [dm3] X_18033916_SNP [dm6]	G	A	2.719e^-4	0.998	INTRON Sh
3L	16280980	3L_16280980_SNP [dm3] 3L_16287880_SNP [dm6]	G	A	2.720e^-4	0.998	SYNONYMOUS_CODING CG13046
3R	20329481	3R_20329481_SNP [dm3] 3R_24503759_SNP [dm6]	C	T	2.731e^-4	0.998	INTERGENIC
3R	3630034	3R_3630034_SNP [dm3] 3R_7804312_SNP [dm6]	T	C	2.733e^-4	0.998	UTR_5_PRIME CG18268 DOWNSTREAM CG2993
2L	3895112	2L_3895112_MNP [dm3] 2L_3895112_MNP [dm6]	AGGT	TATA	2.737e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2R	12271111	2R_12271111_SNP [dm3] 2R_16383606_SNP [dm6]	T	C	2.737e^-4	0.998	UTR_3_PRIME CG43187
3L	10896759	3L_10896759_SNP [dm3] 3L_10903659_SNP [dm6]	G	T	2.738e^-4	0.998	INTERGENIC
2R	17754794	2R_17754794_SNP [dm3] 2R_21867289_SNP [dm6]	G	T	2.752e^-4	0.998	UPSTREAM comr INTERGENIC
2R	10868145	2R_10868145_DEL [dm3] 2R_14980640_DEL [dm6]	AA	A	2.757e^-4	0.998	UTR_3_PRIME ckn UPSTREAM pcs DOWNSTREAM ckn	TF binding site BDTNP1_TFBS_dl
2L	11937691	2L_11937691_SNP [dm3] 2L_11937691_SNP [dm6]	A	C	2.767e^-4	0.998	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC
X	18950828	X_18950828_SNP [dm3] X_19056795_SNP [dm6]	T	A	2.770e^-4	0.998	UPSTREAM CG14190 INTERGENIC
2L	5251692	2L_5251692_DEL [dm3] 2L_5251692_DEL [dm6]	ACAAA	A	2.772e^-4	0.998	INTRON tkv
X	5920096	X_5920096_SNP [dm3] X_6026063_SNP [dm6]	A	C	2.772e^-4	0.998	INTERGENIC
3L	7212868	3L_7212868_SNP [dm3] 3L_7219768_SNP [dm6]	C	G	2.773e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7212940	3L_7212940_SNP [dm3] 3L_7219840_SNP [dm6]	T	C	2.773e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12326656	3R_12326656_SNP [dm3] 3R_16500934_SNP [dm6]	T	G	2.788e^-4	0.998	NON_SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	14901306	2L_14901306_SNP [dm3] 2L_14901306_SNP [dm6]	C	T	2.803e^-4	0.998	INTERGENIC
X	6615034	X_6615034_SNP [dm3] X_6721001_SNP [dm6]	G	A	2.811e^-4	0.998	UTR_3_PRIME CG3168
X	4426728	X_4426728_SNP [dm3] X_4532695_SNP [dm6]	G	T	2.824e^-4	0.998	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_chinmo
2L	17608369	2L_17608369_SNP [dm3] 2L_17608369_SNP [dm6]	A	G	2.828e^-4	0.998	INTERGENIC
3R	6931356	3R_6931356_SNP [dm3] 3R_11105634_SNP [dm6]	G	A	2.830e^-4	0.998	INTERGENIC
2L	5446128	2L_5446128_SNP [dm3] 2L_5446128_SNP [dm6]	T	A	2.842e^-4	0.998	INTERGENIC
2L	4200659	2L_4200659_SNP [dm3] 2L_4200659_SNP [dm6]	C	T	2.843e^-4	0.998	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	16088018	3R_16088018_SNP [dm3] 3R_20262296_SNP [dm6]	G	C	2.845e^-4	0.998	INTRON cic	TF binding site mE1_TFBS_cad
2L	1464806	2L_1464806_SNP [dm3] 2L_1464806_SNP [dm6]	G	T	2.848e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	10088508	2L_10088508_SNP [dm3] 2L_10088508_SNP [dm6]	C	A	2.848e^-4	0.998	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13344621	3L_13344621_SNP [dm3] 3L_13351521_SNP [dm6]	C	T	2.876e^-4	0.998	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
3L	5665000	3L_5665000_SNP [dm3] 3L_5671900_SNP [dm6]	T	A	2.885e^-4	0.998	INTRON sif
3L	2228748	3L_2228748_SNP [dm3] 3L_2228748_SNP [dm6]	T	A	2.892e^-4	0.998	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	14861845	2L_14861845_SNP [dm3] 2L_14861845_SNP [dm6]	A	C	2.892e^-4	0.998	INTERGENIC
3L	8885364	3L_8885364_SNP [dm3] 3L_8892264_SNP [dm6]	T	G	2.893e^-4	0.998	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10632213	3L_10632213_DEL [dm3] 3L_10639113_DEL [dm6]	TAAGAATTTT	T	2.900e^-4	0.998	UPSTREAM E_z_ & 1 other INTRON CG8009
3R	26470637	3R_26470637_SNP [dm3] 3R_30644915_SNP [dm6]	C	T	2.903e^-4	0.998	NON_SYNONYMOUS_CODING CG31013
X	16063963	X_16063963_INS [dm3] X_16169930_INS [dm6]	T	TAATCTTAGGAAAATGGGAA...	2.906e^-4	0.998	INTERGENIC
2L	14901383	2L_14901383_SNP [dm3] 2L_14901383_SNP [dm6]	G	A	2.919e^-4	0.998	INTERGENIC
3L	15115456	3L_15115456_DEL [dm3] 3L_15122356_DEL [dm6]	AA	A	2.938e^-4	0.998	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	13008912	3L_13008912_SNP [dm3] 3L_13015812_SNP [dm6]	A	C	2.942e^-4	0.998	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	10197665	3L_10197665_DEL [dm3] 3L_10204565_DEL [dm6]	TC	T	2.945e^-4	0.998	INTERGENIC
X	5444681	X_5444681_DEL [dm3] X_5550648_DEL [dm6]	GCAG	G	2.947e^-4	0.998	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	10151574	2L_10151574_SNP [dm3] 2L_10151574_SNP [dm6]	G	A	2.958e^-4	0.998	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	11938160	2L_11938160_SNP [dm3] 2L_11938160_SNP [dm6]	C	T	2.967e^-4	0.998	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
2R	16838214	2R_16838214_SNP [dm3] 2R_20950709_SNP [dm6]	G	C	2.971e^-4	0.998	UTR_3_PRIME CG33704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2L	3471977	2L_3471977_SNP [dm3] 2L_3471977_SNP [dm6]	G	A	2.980e^-4	0.998	SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1
3L	4422161	3L_4422161_SNP [dm3] 3L_4422161_SNP [dm6]	T	C	2.986e^-4	0.998	UTR_5_PRIME CG15020
3L	22944452	3L_22944452_SNP [dm3] 3L_22951352_SNP [dm6]	C	T	2.997e^-4	0.998	SYNONYMOUS_CODING Mes2
3R	15237187	3R_15237187_SNP [dm3] 3R_19411465_SNP [dm6]	C	A	2.999e^-4	0.998	DOWNSTREAM CG11626 INTERGENIC
2L	3437069	2L_3437069_SNP [dm3] 2L_3437069_SNP [dm6]	C	A	3.000e^-4	0.998	INTERGENIC
3L	4698279	3L_4698279_SNP [dm3] 3L_4698279_SNP [dm6]	A	T	3.017e^-4	0.998	DOWNSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1620739	2L_1620739_SNP [dm3] 2L_1620739_SNP [dm6]	G	A	3.021e^-4	0.998	EXON CR44603	TF binding site BDTNP1_TFBS_dl
X	10428499	X_10428499_SNP [dm3] X_10534466_SNP [dm6]	A	T	3.024e^-4	0.998	INTRON spri
3L	12632402	3L_12632402_SNP [dm3] 3L_12639302_SNP [dm6]	A	G	3.028e^-4	0.998	INTRON CR32111
2L	5963846	2L_5963846_SNP [dm3] 2L_5963846_SNP [dm6]	G	A	3.041e^-4	0.998	SYNONYMOUS_CODING psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6618726	2R_6618726_DEL [dm3] 2R_10731221_DEL [dm6]	GGCAAA	T	3.043e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17840876	3R_17840876_SNP [dm3] 3R_22015154_SNP [dm6]	A	G	3.046e^-4	0.998	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	14857782	2L_14857782_SNP [dm3] 2L_14857782_SNP [dm6]	C	A	3.047e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	2919988	2L_2919988_SNP [dm3] 2L_2919988_SNP [dm6]	C	T	3.050e^-4	0.998	INTRON lilli
2R	1014199	2R_1014199_DEL [dm3] 2R_5126694_DEL [dm6]	ATCTCTAGAGCCA...	A	3.052e^-4	0.998	UPSTREAM CR43256 INTRON gus	transposable element FlyBase
3R	20128188	3R_20128188_SNP [dm3] 3R_24302466_SNP [dm6]	T	A	3.055e^-4	0.998	INTRON crb
3L	14235088	3L_14235088_SNP [dm3] 3L_14241988_SNP [dm6]	A	G	3.056e^-4	0.998	INTERGENIC
2L	19806791	2L_19806791_SNP [dm3] 2L_19806791_SNP [dm6]	T	A	3.059e^-4	0.998	INTRON sick
3L	7212982	3L_7212982_SNP [dm3] 3L_7219882_SNP [dm6]	G	A	3.078e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1452160	X_1452160_SNP [dm3] X_1558127_SNP [dm6]	G	T	3.087e^-4	0.998	NON_SYNONYMOUS_CODING Mur2B DOWNSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo
2L	11935302	2L_11935302_SNP [dm3] 2L_11935302_SNP [dm6]	G	A	3.090e^-4	0.998	SPLICE_SITE_REGION Or33a SYNONYMOUS_CODING Or33a UPSTREAM Or33b
3L	1837200	3L_1837200_SNP [dm3] 3L_1837200_SNP [dm6]	T	A	3.095e^-4	0.998	INTERGENIC
3L	371894	3L_371894_SNP [dm3] 3L_371894_SNP [dm6]	A	C	3.107e^-4	0.998	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3587604	3R_3587604_SNP [dm3] 3R_7761882_SNP [dm6]	T	G	3.112e^-4	0.998	INTRON Sp7
3L	12632392	3L_12632392_SNP [dm3] 3L_12639292_SNP [dm6]	G	C	3.113e^-4	0.998	INTRON CR32111
2L	1289915	2L_1289915_SNP [dm3] 2L_1289915_SNP [dm6]	C	A	3.114e^-4	0.998	INTRON robo3
2L	4338893	2L_4338893_INS [dm3] 2L_4338893_INS [dm6]	T	TCT	3.123e^-4	0.998	UTR_5_PRIME Atet INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	906754	3R_906754_SNP [dm3] 3R_5081032_SNP [dm6]	C	G	3.123e^-4	0.998	UTR_3_PRIME corto
3L	5958897	3L_5958897_SNP [dm3] 3L_5965797_SNP [dm6]	C	A	3.126e^-4	0.998	INTERGENIC
X	5444688	X_5444688_DEL [dm3] X_5550655_DEL [dm6]	TATTATTAAGTTA...	T	3.131e^-4	0.998	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8387386	2L_8387386_SNP [dm3] 2L_8387386_SNP [dm6]	C	T	3.153e^-4	0.998	SPLICE_SITE_REGION CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14917932	2L_14917932_SNP [dm3] 2L_14917932_SNP [dm6]	T	G	3.158e^-4	0.998	INTRON CG42313
2L	15047112	2L_15047112_SNP [dm3] 2L_15047112_SNP [dm6]	G	T	3.159e^-4	0.998	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
X	335607	X_335607_SNP [dm3] X_441574_SNP [dm6]	T	C	3.162e^-4	0.998	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12375936	X_12375936_SNP [dm3] X_12481903_SNP [dm6]	T	C	3.172e^-4	0.998	INTERGENIC
2L	19611207	2L_19611207_DEL [dm3] 2L_19611207_DEL [dm6]	TAT	A	3.180e^-4	0.998	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
2L	4163132	2L_4163132_SNP [dm3] 2L_4163132_SNP [dm6]	A	C	3.201e^-4	0.998	INTERGENIC
3L	14152429	3L_14152429_SNP [dm3] 3L_14159329_SNP [dm6]	C	T	3.207e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs
2L	16509096	2L_16509096_SNP [dm3] 2L_16509096_SNP [dm6]	A	G	3.216e^-4	0.998	UTR_3_PRIME CG5953 DOWNSTREAM CG5953
2L	1045049	2L_1045049_SNP [dm3] 2L_1045049_SNP [dm6]	A	C	3.218e^-4	0.998	INTRON IA-2
3R	8375578	3R_8375578_SNP [dm3] 3R_12549856_SNP [dm6]	T	G	3.231e^-4	0.998	DOWNSTREAM Octbeta2R INTERGENIC
2L	16101230	2L_16101230_SNP [dm3] 2L_16101230_SNP [dm6]	C	T	3.240e^-4	0.998	INTERGENIC
X	7662902	X_7662902_SNP [dm3] X_7768869_SNP [dm6]	G	A	3.241e^-4	0.998	SYNONYMOUS_CODING CG34338	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7156621	2L_7156621_SNP [dm3] 2L_7156621_SNP [dm6]	A	G	3.242e^-4	0.998	SYNONYMOUS_CODING Pvf3
2L	12189601	2L_12189601_SNP [dm3] 2L_12189601_SNP [dm6]	T	G	3.270e^-4	0.998	INTRON aret
3L	17455414	3L_17455414_SNP [dm3] 3L_17462314_SNP [dm6]	A	G	3.270e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10183662	3R_10183662_INS [dm3] 3R_14357940_INS [dm6]	A	ACA	3.281e^-4	0.998	DOWNSTREAM CG31320 INTRON NK7.1
2L	17608370	2L_17608370_SNP [dm3] 2L_17608370_SNP [dm6]	G	A	3.284e^-4	0.998	INTERGENIC
X	405023	X_405023_SNP [dm3] X_510990_SNP [dm6]	T	C	3.294e^-4	0.998	UTR_3_PRIME elav INTRON arg
2R	12691886	2R_12691886_SNP [dm3] 2R_16804381_SNP [dm6]	A	T	3.296e^-4	0.998	INTERGENIC
3L	21758711	3L_21758711_SNP [dm3] 3L_21765611_SNP [dm6]	A	C	3.296e^-4	0.998	INTRON Syn1	TF binding site mE1_TFBS_HSA
X	18375152	X_18375152_DEL [dm3] X_18481119_DEL [dm6]	AGATATTTTCATATAA...	A	3.311e^-4	0.998	DOWNSTREAM CR45714 INTRON Hayan EXON CR45714
3L	19002363	3L_19002363_SNP [dm3] 3L_19009263_SNP [dm6]	G	T	3.314e^-4	0.998	INTRON nkd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14887887	2L_14887887_SNP [dm3] 2L_14887887_SNP [dm6]	G	A	3.316e^-4	0.998	INTERGENIC
X	2303306	X_2303306_SNP [dm3] X_2409273_SNP [dm6]	A	C	3.325e^-4	0.998	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14713658	2L_14713658_INS [dm3] 2L_14713658_INS [dm6]	A	ATTTGTGGCCCTTATCGCCG...	3.329e^-4	0.998	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
X	18156338	X_18156338_SNP [dm3] X_18262305_SNP [dm6]	A	C	3.331e^-4	0.998	INTERGENIC
3L	2996242	3L_2996242_MNP [dm3] 3L_2996242_MNP [dm6]	GTG	AAC	3.337e^-4	0.998	DOWNSTREAM CG2113 INTERGENIC
X	384835	X_384835_SNP [dm3] X_490802_SNP [dm6]	A	T	3.343e^-4	0.998	UTR_3_PRIME CG17896 DOWNSTREAM CG3156
2R	1803601	2R_1803601_SNP [dm3] 2R_5916096_SNP [dm6]	T	G	3.351e^-4	0.998	INTRON CG43366
2L	14864940	2L_14864940_SNP [dm3] 2L_14864940_SNP [dm6]	A	T	3.351e^-4	0.998	INTERGENIC
X	5176704	X_5176704_SNP [dm3] X_5282671_SNP [dm6]	G	C	3.354e^-4	0.998	INTERGENIC
2L	17599141	2L_17599141_SNP [dm3] 2L_17599141_SNP [dm6]	A	C	3.359e^-4	0.998	INTRON Sytalpha	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14884903	2L_14884903_INS [dm3] 2L_14884903_INS [dm6]	T	TGGG	3.361e^-4	0.998	UPSTREAM CR45302 INTERGENIC
3L	4401294	3L_4401294_INS [dm3] 3L_4401294_INS [dm6]	A	AGAAATACTATAGATATTTT...	3.366e^-4	0.998	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16523072	3L_16523072_SNP [dm3] 3L_16529972_SNP [dm6]	G	A	3.370e^-4	0.998	INTRON CG43373
2L	13911855	2L_13911855_SNP [dm3] 2L_13911855_SNP [dm6]	A	T	3.372e^-4	0.998	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	13326029	2L_13326029_SNP [dm3] 2L_13326029_SNP [dm6]	C	A	3.373e^-4	0.998	INTRON CG43778
2L	8174084	2L_8174084_SNP [dm3] 2L_8174084_SNP [dm6]	A	G	3.374e^-4	0.998	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6248403	2L_6248403_SNP [dm3] 2L_6248403_SNP [dm6]	G	T	3.382e^-4	0.998	INTERGENIC
2R	17761994	2R_17761994_SNP [dm3] 2R_21874489_SNP [dm6]	C	T	3.384e^-4	0.998	INTRON Fili	TF binding site BDTNP1_TFBS_da
X	9692131	X_9692131_INS [dm3] X_9798098_INS [dm6]	G	GG	3.391e^-4	0.998	INTRON CG32698
X	9440402	X_9440402_SNP [dm3] X_9546369_SNP [dm6]	T	C	3.397e^-4	0.998	INTRON CG32700
2L	17507096	2L_17507096_SNP [dm3] 2L_17507096_SNP [dm6]	G	T	3.398e^-4	0.998	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
X	3971295	X_3971295_SNP [dm3] X_4077262_SNP [dm6]	T	A	3.398e^-4	0.998	INTRON CG43689
2L	15229795	2L_15229795_SNP [dm3] 2L_15229795_SNP [dm6]	T	G	3.399e^-4	0.998	INTRON ZnT35C
3L	12632387	3L_12632387_SNP [dm3] 3L_12639287_SNP [dm6]	C	A	3.406e^-4	0.998	INTRON CR32111
2L	14637167	2L_14637167_SNP [dm3] 2L_14637167_SNP [dm6]	T	A	3.408e^-4	0.998	INTRON osp
2R	6618734	2R_6618734_MNP [dm3] 2R_10731229_MNP [dm6]	ACATAT	TTTGCC	3.420e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14881576	2L_14881576_DEL [dm3] 2L_14881576_DEL [dm6]	ATAA	A	3.424e^-4	0.998	UTR_5_PRIME Mst35Ba DOWNSTREAM Mst35Bb
2L	5395385	2L_5395385_SNP [dm3] 2L_5395385_SNP [dm6]	T	G	3.426e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7601330	2L_7601330_SNP [dm3] 2L_7601330_SNP [dm6]	C	A	3.429e^-4	0.998	INTERGENIC
3R	13604069	3R_13604069_SNP [dm3] 3R_17778347_SNP [dm6]	G	T	3.438e^-4	0.998	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3R	2209822	3R_2209822_SNP [dm3] 3R_6384100_SNP [dm6]	T	C	3.440e^-4	0.998	UPSTREAM godzilla INTRON godzilla	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13719709	2R_13719709_INS [dm3] 2R_17832204_INS [dm6]	A	AA	3.459e^-4	0.998	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14870126	2L_14870126_SNP [dm3] 2L_14870126_SNP [dm6]	G	A	3.462e^-4	0.998	DOWNSTREAM CG4480 INTERGENIC
3L	13934741	3L_13934741_SNP [dm3] 3L_13941641_SNP [dm6]	T	A	3.467e^-4	0.998	INTRON CG32137	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15229794	2L_15229794_SNP [dm3] 2L_15229794_SNP [dm6]	G	T	3.473e^-4	0.998	INTRON ZnT35C
2L	4628121	2L_4628121_SNP [dm3] 2L_4628121_SNP [dm6]	C	A	3.476e^-4	0.998	INTERGENIC
2L	15088835	2L_15088835_SNP [dm3] 2L_15088835_SNP [dm6]	T	A	3.480e^-4	0.998	INTRON CG15270
2L	3895185	2L_3895185_SNP [dm3] 2L_3895185_SNP [dm6]	G	T	3.487e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
3L	14236427	3L_14236427_SNP [dm3] 3L_14243327_SNP [dm6]	G	A	3.488e^-4	0.998	INTERGENIC
X	377574	X_377574_SNP [dm3] X_483541_SNP [dm6]	A	G	3.488e^-4	0.998	SYNONYMOUS_CODING CG18273 DOWNSTREAM CG3176	TF binding site mE1_TFBS_sens
3L	3695625	3L_3695625_SNP [dm3] 3L_3695625_SNP [dm6]	T	G	3.492e^-4	0.998	INTERGENIC
3R	13605444	3R_13605444_SNP [dm3] 3R_17779722_SNP [dm6]	T	C	3.496e^-4	0.998	SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_chinmo
2L	14832441	2L_14832441_SNP [dm3] 2L_14832441_SNP [dm6]	T	A	3.499e^-4	0.998	INTERGENIC
3R	20469731	3R_20469731_SNP [dm3] 3R_24644009_SNP [dm6]	A	G	3.504e^-4	0.998	NON_SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6618779	2R_6618779_SNP [dm3] 2R_10731274_SNP [dm6]	C	T	3.510e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13324731	3L_13324731_SNP [dm3] 3L_13331631_SNP [dm6]	A	G	3.511e^-4	0.998	INTERGENIC
2R	6618741	2R_6618741_SNP [dm3] 2R_10731236_SNP [dm6]	T	G	3.511e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1777389	3R_1777389_SNP [dm3] 3R_5951667_SNP [dm6]	C	A	3.518e^-4	0.998	INTRON CG34113
X	10428498	X_10428498_SNP [dm3] X_10534465_SNP [dm6]	A	T	3.525e^-4	0.998	INTRON spri
2L	6100775	2L_6100775_INS [dm3] 2L_6100775_INS [dm6]	A	AT	3.561e^-4	0.998	INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	366062	3L_366062_SNP [dm3] 3L_366062_SNP [dm6]	C	G	3.562e^-4	0.998	NON_SYNONYMOUS_CODING CG13884 DOWNSTREAM trh & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6252053	3R_6252053_SNP [dm3] 3R_10426331_SNP [dm6]	G	A	3.563e^-4	0.998	INTERGENIC
2R	6768360	2R_6768360_SNP [dm3] 2R_10880855_SNP [dm6]	C	A	3.564e^-4	0.998	INTRON Pex6	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
3R	20463412	3R_20463412_SNP [dm3] 3R_24637690_SNP [dm6]	C	A	3.570e^-4	0.998	INTRON puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7797612	2L_7797612_SNP [dm3] 2L_7797612_SNP [dm6]	A	G	3.574e^-4	0.998	SYNONYMOUS_CODING Herp	TF binding site mE1_TFBS_cad
2L	3895142	2L_3895142_SNP [dm3] 2L_3895142_SNP [dm6]	A	T	3.596e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	3895146	2L_3895146_DEL [dm3] 2L_3895146_DEL [dm6]	TC	A	3.596e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
X	11951204	X_11951204_SNP [dm3] X_12057171_SNP [dm6]	C	A	3.599e^-4	0.998	UPSTREAM Uch-L5R INTRON CR43960 & 1 other	TF binding site mE1_TFBS_chinmo
3R	8871618	3R_8871618_SNP [dm3] 3R_13045896_SNP [dm6]	C	A	3.606e^-4	0.998	SYNONYMOUS_CODING Hsc70-2	TF binding site mE1_TFBS_cad
2L	14930040	2L_14930040_SNP [dm3] 2L_14930040_SNP [dm6]	A	G	3.608e^-4	0.998	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	16280857	3L_16280857_SNP [dm3] 3L_16287757_SNP [dm6]	C	T	3.615e^-4	0.998	SYNONYMOUS_CODING CG13046
X	347812	X_347812_SNP [dm3] X_453779_SNP [dm6]	T	G	3.623e^-4	0.998	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1464830	2L_1464830_SNP [dm3] 2L_1464830_SNP [dm6]	T	C	3.628e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	6618755	2R_6618755_SNP [dm3] 2R_10731250_SNP [dm6]	A	T	3.629e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6860355	2L_6860355_SNP [dm3] 2L_6860355_SNP [dm6]	G	A	3.637e^-4	0.998	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10197226	3L_10197226_SNP [dm3] 3L_10204126_SNP [dm6]	T	A	3.647e^-4	0.998	INTERGENIC
2R	18742621	2R_18742621_SNP [dm3] 2R_22855098_SNP [dm6]	G	A	3.648e^-4	0.998	DOWNSTREAM inaD INTRON RpL23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9377929	X_9377929_SNP [dm3] X_9483896_SNP [dm6]	G	T	3.659e^-4	0.998	INTRON mgl
2L	18131221	2L_18131221_SNP [dm3] 2L_18131221_SNP [dm6]	G	A	3.666e^-4	0.998	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11847051	3L_11847051_DEL [dm3] 3L_11853951_DEL [dm6]	GT	C	3.667e^-4	0.998	INTRON CG44837
3R	1809198	3R_1809198_SNP [dm3] 3R_5983476_SNP [dm6]	G	C	3.671e^-4	0.998	INTERGENIC
X	7355382	X_7355382_SNP [dm3] X_7461349_SNP [dm6]	T	A	3.676e^-4	0.998	UPSTREAM CR44500 INTERGENIC
3R	9076914	3R_9076914_SNP [dm3] 3R_13251192_SNP [dm6]	G	A	3.677e^-4	0.998	INTRON Ace
2L	15229772	2L_15229772_SNP [dm3] 2L_15229772_SNP [dm6]	T	A	3.677e^-4	0.998	INTRON ZnT35C
3R	22331656	3R_22331656_SNP [dm3] 3R_26505934_SNP [dm6]	C	T	3.687e^-4	0.998	INTRON plum
3R	6374546	3R_6374546_SNP [dm3] 3R_10548824_SNP [dm6]	A	G	3.691e^-4	0.998	INTRON hth
2R	9374005	2R_9374005_SNP [dm3] 2R_13486500_SNP [dm6]	T	A	3.702e^-4	0.998	UTR_3_PRIME cid DOWNSTREAM bbc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17697911	X_17697911_DEL [dm3] X_17803878_DEL [dm6]	TTGCAATCT	T	3.711e^-4	0.998	INTRON OdsH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	389276	X_389276_SNP [dm3] X_495243_SNP [dm6]	C	A	3.724e^-4	0.998	INTRON CG17778	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14235187	3L_14235187_SNP [dm3] 3L_14242087_SNP [dm6]	G	A	3.728e^-4	0.998	INTERGENIC
2R	19454946	2R_19454946_SNP [dm3] 2R_23567423_SNP [dm6]	T	A	3.730e^-4	0.998	UPSTREAM apt INTRON apt
3R	20520926	3R_20520926_SNP [dm3] 3R_24695204_SNP [dm6]	C	T	3.739e^-4	0.998	INTRON slo
2L	17608393	2L_17608393_INS [dm3] 2L_17608393_INS [dm6]	T	TA	3.740e^-4	0.998	INTERGENIC
3L	5815768	3L_5815768_SNP [dm3] 3L_5822668_SNP [dm6]	C	T	3.743e^-4	0.998	INTRON vn
3L	12859019	3L_12859019_SNP [dm3] 3L_12865919_SNP [dm6]	A	C	3.745e^-4	0.998	INTERGENIC
2R	19385194	2R_19385194_SNP [dm3] 2R_23497671_SNP [dm6]	C	T	3.746e^-4	0.998	INTERGENIC
3L	5815783	3L_5815783_SNP [dm3] 3L_5822683_SNP [dm6]	A	C	3.749e^-4	0.998	INTRON vn
2L	8171386	2L_8171386_SNP [dm3] 2L_8171386_SNP [dm6]	T	G	3.762e^-4	0.998	INTRON Piezo
X	10088551	X_10088551_SNP [dm3] X_10194518_SNP [dm6]	G	A	3.775e^-4	0.998	UTR_3_PRIME CG43902 INTRON CR44894
2R	6822382	2R_6822382_SNP [dm3] 2R_10934877_SNP [dm6]	C	A	3.784e^-4	0.998	INTERGENIC
3L	9423941	3L_9423941_SNP [dm3] 3L_9430841_SNP [dm6]	T	A	3.784e^-4	0.998	NON_SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19257714	2R_19257714_SNP [dm3] 2R_23370191_SNP [dm6]	G	A	3.798e^-4	0.998	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_sens
X	15087186	X_15087186_INS [dm3] X_15193153_INS [dm6]	A	AGAACAGGA	3.806e^-4	0.998	INTERGENIC
3L	10222344	3L_10222344_SNP [dm3] 3L_10229244_SNP [dm6]	A	C	3.821e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3895158	2L_3895158_MNP [dm3] 2L_3895158_MNP [dm6]	AGC	TTA	3.825e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	14884121	2L_14884121_SNP [dm3] 2L_14884121_SNP [dm6]	C	T	3.829e^-4	0.998	UPSTREAM Mst35Bb & 1 other INTERGENIC
X	6627115	X_6627115_SNP [dm3] X_6733082_SNP [dm6]	A	G	3.832e^-4	0.998	INTRON CG3168 & 1 other
2L	4203607	2L_4203607_SNP [dm3] 2L_4203607_SNP [dm6]	G	A	3.854e^-4	0.998	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	4163297	2L_4163297_SNP [dm3] 2L_4163297_SNP [dm6]	T	G	3.862e^-4	0.998	INTERGENIC
2R	6620012	2R_6620012_SNP [dm3] 2R_10732507_SNP [dm6]	A	G	3.865e^-4	0.998	UPSTREAM CG12338 & 1 other INTRON CG7220
2R	18058257	2R_18058257_SNP [dm3] 2R_22170752_SNP [dm6]	C	T	3.872e^-4	0.998	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14853101	2L_14853101_SNP [dm3] 2L_14853101_SNP [dm6]	G	T	3.885e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26442655	3R_26442655_SNP [dm3] 3R_30616933_SNP [dm6]	A	G	3.891e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14849894	2L_14849894_SNP [dm3] 2L_14849894_SNP [dm6]	T	A	3.893e^-4	0.998	UPSTREAM CG15279 INTRON CG15279
3L	2874668	3L_2874668_SNP [dm3] 3L_2874668_SNP [dm6]	C	T	3.896e^-4	0.998	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	11941380	2L_11941380_SNP [dm3] 2L_11941380_SNP [dm6]	G	A	3.897e^-4	0.998	INTERGENIC
2L	14900769	2L_14900769_SNP [dm3] 2L_14900769_SNP [dm6]	A	G	3.898e^-4	0.998	INTERGENIC
2L	14833376	2L_14833376_SNP [dm3] 2L_14833376_SNP [dm6]	C	G	3.901e^-4	0.998	INTERGENIC
2L	13326031	2L_13326031_SNP [dm3] 2L_13326031_SNP [dm6]	C	A	3.903e^-4	0.998	INTRON CG43778
2R	7886257	2R_7886257_SNP [dm3] 2R_11998752_SNP [dm6]	A	C	3.911e^-4	0.998	INTERGENIC
3L	17681860	3L_17681860_SNP [dm3] 3L_17688760_SNP [dm6]	T	A	3.913e^-4	0.998	INTERGENIC
2L	14636549	2L_14636549_SNP [dm3] 2L_14636549_SNP [dm6]	G	T	3.918e^-4	0.998	INTRON osp
X	353649	X_353649_SNP [dm3] X_459616_SNP [dm6]	G	A	3.920e^-4	0.998	INTRON CG32816	regulatory region REDfly_CRMs
2R	19385130	2R_19385130_SNP [dm3] 2R_23497607_SNP [dm6]	T	A	3.928e^-4	0.998	INTERGENIC
3L	20914505	3L_20914505_SNP [dm3] 3L_20921405_SNP [dm6]	G	T	3.941e^-4	0.998	DOWNSTREAM CR45734 EXON CR43929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4167831	2L_4167831_SNP [dm3] 2L_4167831_SNP [dm6]	T	A	3.943e^-4	0.998	INTERGENIC
X	16063952	X_16063952_SNP [dm3] X_16169919_SNP [dm6]	A	G	3.943e^-4	0.998	INTERGENIC
2L	20538858	2L_20538858_SNP [dm3] 2L_20538858_SNP [dm6]	A	C	3.952e^-4	0.998	DOWNSTREAM CR45707 INTERGENIC
X	17366839	X_17366839_SNP [dm3] X_17472806_SNP [dm6]	G	T	3.962e^-4	0.998	INTRON CG43658
3R	13604760	3R_13604760_SNP [dm3] 3R_17779038_SNP [dm6]	T	C	3.964e^-4	0.998	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
2L	9071939	2L_9071939_SNP [dm3] 2L_9071939_SNP [dm6]	G	A	3.968e^-4	0.998	UPSTREAM CG31708 DOWNSTREAM CR44483 INTERGENIC
3R	20942640	3R_20942640_DEL [dm3] 3R_25116918_DEL [dm6]	ATTGAGTGTGTGCATCCAT...	A	3.974e^-4	0.998	DOWNSTREAM CG31510 INTRON CG31108
2L	2682657	2L_2682657_SNP [dm3] 2L_2682657_SNP [dm6]	T	C	3.976e^-4	0.998	INTRON CG31690
3R	21970021	3R_21970021_SNP [dm3] 3R_26144299_SNP [dm6]	G	T	3.981e^-4	0.998	INTERGENIC
3L	10921270	3L_10921270_SNP [dm3] 3L_10928170_SNP [dm6]	C	A	3.985e^-4	0.998	INTERGENIC
2L	4197987	2L_4197987_SNP [dm3] 2L_4197987_SNP [dm6]	G	A	3.986e^-4	0.998	UTR_5_PRIME CG3714 UPSTREAM CG3714 DOWNSTREAM ft	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17031995	3R_17031995_SNP [dm3] 3R_21206273_SNP [dm6]	T	A	4.009e^-4	0.998	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	15088824	2L_15088824_SNP [dm3] 2L_15088824_SNP [dm6]	C	T	4.011e^-4	0.998	INTRON CG15270
3L	2557520	3L_2557520_SNP [dm3] 3L_2557520_SNP [dm6]	A	T	4.014e^-4	0.998	INTRON msn	TF binding site mE1_TFBS_sens
X	19386406	X_19386406_DEL [dm3] X_19492373_DEL [dm6]	GG	G	4.016e^-4	0.998	UPSTREAM CG12203 & 1 other DOWNSTREAM CG12204 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	6618767	2R_6618767_SNP [dm3] 2R_10731262_SNP [dm6]	G	T	4.029e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21970106	3R_21970106_SNP [dm3] 3R_26144384_SNP [dm6]	C	T	4.030e^-4	0.998	INTERGENIC
X	8142490	X_8142490_SNP [dm3] X_8248457_SNP [dm6]	A	G	4.040e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
2R	19454956	2R_19454956_INS [dm3] 2R_23567433_INS [dm6]	G	GATTTTTTGAGGCGAGAATA...	4.046e^-4	0.998	UPSTREAM apt INTRON apt
3R	21969931	3R_21969931_SNP [dm3] 3R_26144209_SNP [dm6]	G	A	4.049e^-4	0.998	INTERGENIC
2R	19385188	2R_19385188_SNP [dm3] 2R_23497665_SNP [dm6]	T	G	4.051e^-4	0.998	INTERGENIC
3R	6670400	3R_6670400_SNP [dm3] 3R_10844678_SNP [dm6]	G	A	4.051e^-4	0.998	INTRON Cad86C
2R	11476477	2R_11476477_SNP [dm3] 2R_15588972_SNP [dm6]	G	T	4.053e^-4	0.998	INTERGENIC
3L	16330197	3L_16330197_SNP [dm3] 3L_16337097_SNP [dm6]	T	A	4.056e^-4	0.998	INTERGENIC
2R	9370172	2R_9370172_SNP [dm3] 2R_13482667_SNP [dm6]	C	A	4.056e^-4	0.998	DOWNSTREAM cbc INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5632839	3L_5632839_SNP [dm3] 3L_5639739_SNP [dm6]	T	G	4.057e^-4	0.998	INTRON Blimp-1
3L	14227718	3L_14227718_SNP [dm3] 3L_14234618_SNP [dm6]	G	A	4.060e^-4	0.998	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	15737274	3R_15737274_SNP [dm3] 3R_19911552_SNP [dm6]	C	T	4.061e^-4	0.998	SYNONYMOUS_CODING RhoGAP92B
3R	4426092	3R_4426092_INS [dm3] 3R_8600370_INS [dm6]	G	CC	4.063e^-4	0.998	INTRON 5-HT2B
2R	10438828	2R_10438828_DEL [dm3] 2R_14551323_DEL [dm6]	TT	T	4.064e^-4	0.998	INTRON ttv
X	336558	X_336558_SNP [dm3] X_442525_SNP [dm6]	A	G	4.072e^-4	0.998	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14911347	2L_14911347_SNP [dm3] 2L_14911347_SNP [dm6]	C	T	4.074e^-4	0.998	INTRON CG42313
2L	4200770	2L_4200770_SNP [dm3] 2L_4200770_SNP [dm6]	T	A	4.074e^-4	0.998	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3L	9424881	3L_9424881_SNP [dm3] 3L_9431781_SNP [dm6]	C	T	4.076e^-4	0.998	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4417288	3L_4417288_SNP [dm3] 3L_4417288_SNP [dm6]	T	C	4.079e^-4	0.998	INTRON DOR
2L	7171885	2L_7171885_INS [dm3] 2L_7171885_INS [dm6]	A	ACTAGA	4.089e^-4	0.998	INTERGENIC
3L	10632242	3L_10632242_SNP [dm3] 3L_10639142_SNP [dm6]	T	C	4.106e^-4	0.998	UPSTREAM CG18628 INTRON CG8009
2L	1461448	2L_1461448_SNP [dm3] 2L_1461448_SNP [dm6]	C	T	4.108e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19806787	2L_19806787_INS [dm3] 2L_19806787_INS [dm6]	A	AG	4.118e^-4	0.998	INTRON sick
2R	17333158	2R_17333158_SNP [dm3] 2R_21445653_SNP [dm6]	G	C	4.119e^-4	0.998	INTRON Sdc
2R	6618766	2R_6618766_SNP [dm3] 2R_10731261_SNP [dm6]	T	A	4.119e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2751262	2R_2751262_SNP [dm3] 2R_6863757_SNP [dm6]	T	A	4.128e^-4	0.998	INTRON coro	TF binding site mE1_TFBS_cad
3L	19384369	3L_19384369_SNP [dm3] 3L_19391269_SNP [dm6]	G	T	4.129e^-4	0.998	INTRON CG32206
X	1431949	X_1431949_SNP [dm3] X_1537916_SNP [dm6]	A	C	4.134e^-4	0.998	INTRON Mur2B
2L	6688748	2L_6688748_SNP [dm3] 2L_6688748_SNP [dm6]	A	T	4.138e^-4	0.998	DOWNSTREAM Tsp INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10814763	2R_10814763_SNP [dm3] 2R_14927258_SNP [dm6]	C	T	4.138e^-4	0.998	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7798441	2L_7798441_SNP [dm3] 2L_7798441_SNP [dm6]	C	T	4.140e^-4	0.998	SYNONYMOUS_CODING Herp
X	10087148	X_10087148_SNP [dm3] X_10193115_SNP [dm6]	G	A	4.145e^-4	0.998	UTR_3_PRIME CG43902 INTRON CR44894
2L	14965916	2L_14965916_SNP [dm3] 2L_14965916_SNP [dm6]	G	A	4.147e^-4	0.998	INTRON CG42313
2L	13326016	2L_13326016_SNP [dm3] 2L_13326016_SNP [dm6]	T	C	4.163e^-4	0.998	INTRON CG43778
2L	11816687	2L_11816687_SNP [dm3] 2L_11816687_SNP [dm6]	C	T	4.165e^-4	0.998	SYNONYMOUS_CODING Pde1c
3R	20795635	3R_20795635_SNP [dm3] 3R_24969913_SNP [dm6]	T	C	4.165e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	2908027	2R_2908027_SNP [dm3] 2R_7020522_SNP [dm6]	T	C	4.178e^-4	0.998	SYNONYMOUS_CODING CG43647
2L	8289138	2L_8289138_SNP [dm3] 2L_8289138_SNP [dm6]	A	T	4.181e^-4	0.998	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6618782	2R_6618782_SNP [dm3] 2R_10731277_SNP [dm6]	T	C	4.190e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14829955	2L_14829955_SNP [dm3] 2L_14829955_SNP [dm6]	C	T	4.193e^-4	0.998	INTERGENIC
2L	14939084	2L_14939084_SNP [dm3] 2L_14939084_SNP [dm6]	C	G	4.193e^-4	0.998	INTRON CG42313
X	6108840	X_6108840_SNP [dm3] X_6214807_SNP [dm6]	T	C	4.198e^-4	0.998	INTERGENIC
3L	10822100	3L_10822100_SNP [dm3] 3L_10829000_SNP [dm6]	C	T	4.206e^-4	0.998	INTERGENIC
3R	21851630	3R_21851630_SNP [dm3] 3R_26025908_SNP [dm6]	T	C	4.210e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13326034	2L_13326034_SNP [dm3] 2L_13326034_SNP [dm6]	T	C	4.212e^-4	0.998	INTRON CG43778
2R	12691885	2R_12691885_SNP [dm3] 2R_16804380_SNP [dm6]	A	T	4.215e^-4	0.998	INTERGENIC
3L	4401275	3L_4401275_SNP [dm3] 3L_4401275_SNP [dm6]	C	A	4.235e^-4	0.998	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6663081	3R_6663081_SNP [dm3] 3R_10837359_SNP [dm6]	C	A	4.240e^-4	0.998	INTRON Cad86C
X	16548161	X_16548161_SNP [dm3] X_16654128_SNP [dm6]	C	T	4.242e^-4	0.998	DOWNSTREAM CG32573 & 1 other INTRON CG9723	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	4163211	2L_4163211_SNP [dm3] 2L_4163211_SNP [dm6]	G	A	4.244e^-4	0.998	INTERGENIC
3R	6374548	3R_6374548_DEL [dm3] 3R_10548826_DEL [dm6]	CC	C	4.253e^-4	0.998	INTRON hth
2L	2682656	2L_2682656_SNP [dm3] 2L_2682656_SNP [dm6]	C	T	4.259e^-4	0.998	INTRON CG31690
X	12375998	X_12375998_SNP [dm3] X_12481965_SNP [dm6]	G	C	4.260e^-4	0.998	INTERGENIC
3L	12383567	3L_12383567_SNP [dm3] 3L_12390467_SNP [dm6]	G	T	4.265e^-4	0.998	INTRON Ncc69
2L	17608387	2L_17608387_SNP [dm3] 2L_17608387_SNP [dm6]	T	C	4.287e^-4	0.998	INTERGENIC
2R	11876228	2R_11876228_DEL [dm3] 2R_15988723_DEL [dm6]	GG	G	4.287e^-4	0.998	DOWNSTREAM CR45021 & 1 other INTRON Strn-Mlck
3R	26442669	3R_26442669_SNP [dm3] 3R_30616947_SNP [dm6]	T	C	4.295e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18156268	X_18156268_SNP [dm3] X_18262235_SNP [dm6]	C	G	4.301e^-4	0.998	INTERGENIC
2L	14871107	2L_14871107_SNP [dm3] 2L_14871107_SNP [dm6]	C	T	4.308e^-4	0.998	SYNONYMOUS_CODING CG4480
2L	16574599	2L_16574599_SNP [dm3] 2L_16574599_SNP [dm6]	G	A	4.310e^-4	0.998	INTRON CG42389
3L	22142778	3L_22142778_SNP [dm3] 3L_22149678_SNP [dm6]	C	T	4.311e^-4	0.998	INTRON olf413
2L	14829481	2L_14829481_SNP [dm3] 2L_14829481_SNP [dm6]	A	C	4.312e^-4	0.998	INTERGENIC
3R	11082547	3R_11082547_SNP [dm3] 3R_15256825_SNP [dm6]	A	G	4.323e^-4	0.998	UTR_3_PRIME CG42404
2L	19806756	2L_19806756_SNP [dm3] 2L_19806756_SNP [dm6]	A	T	4.324e^-4	0.998	INTRON sick
3L	350837	3L_350837_DEL [dm3] 3L_350837_DEL [dm6]	TT	T	4.335e^-4	0.998	UPSTREAM Ptpmeg INTRON Ptpmeg
2L	7157221	2L_7157221_SNP [dm3] 2L_7157221_SNP [dm6]	T	A	4.341e^-4	0.998	UTR_5_PRIME Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5664786	3L_5664786_SNP [dm3] 3L_5671686_SNP [dm6]	T	C	4.344e^-4	0.998	INTRON sif
3R	20545307	3R_20545307_SNP [dm3] 3R_24719585_SNP [dm6]	T	A	4.345e^-4	0.998	UPSTREAM tok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13508243	2R_13508243_SNP [dm3] 2R_17620738_SNP [dm6]	G	T	4.368e^-4	0.998	INTRON CG10936
X	20908758	X_20908758_SNP [dm3] X_21037731_SNP [dm6]	C	G	4.369e^-4	0.998	UTR_3_PRIME Ntf-2 INTRON Ntf-2
3L	21688562	3L_21688562_SNP [dm3] 3L_21695462_SNP [dm6]	T	A	4.369e^-4	0.998	INTRON CG32447	TF binding site BDTNP1_TFBS_twi
X	13655559	X_13655559_SNP [dm3] X_13761526_SNP [dm6]	A	T	4.375e^-4	0.998	UTR_3_PRIME Yp3 DOWNSTREAM Yp3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12330139	3R_12330139_SNP [dm3] 3R_16504417_SNP [dm6]	C	A	4.378e^-4	0.998	INTRON CG42342
X	387217	X_387217_SNP [dm3] X_493184_SNP [dm6]	G	A	4.378e^-4	0.998	UPSTREAM CG17896 INTRON CG17896	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4169877	2L_4169877_SNP [dm3] 2L_4169877_SNP [dm6]	G	C	4.385e^-4	0.998	INTERGENIC
2R	6626077	2R_6626077_SNP [dm3] 2R_10738572_SNP [dm6]	T	C	4.385e^-4	0.998	DOWNSTREAM Mat1 & 1 other INTERGENIC
2L	14900692	2L_14900692_DEL [dm3] 2L_14900692_DEL [dm6]	TC	T	4.397e^-4	0.998	INTERGENIC
2L	18018740	2L_18018740_SNP [dm3] 2L_18018740_SNP [dm6]	A	G	4.399e^-4	0.998	INTRON rdo
3R	26470699	3R_26470699_SNP [dm3] 3R_30644977_SNP [dm6]	T	C	4.400e^-4	0.998	SPLICE_SITE_REGION CG31013 SYNONYMOUS_CODING CG31013
2R	19454934	2R_19454934_SNP [dm3] 2R_23567411_SNP [dm6]	G	A	4.400e^-4	0.998	UPSTREAM apt INTRON apt
3L	15115392	3L_15115392_SNP [dm3] 3L_15122292_SNP [dm6]	A	T	4.415e^-4	0.998	UTR_3_PRIME CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	2643312	2L_2643312_SNP [dm3] 2L_2643312_SNP [dm6]	A	C	4.426e^-4	0.998	INTERGENIC
2L	13925942	2L_13925942_SNP [dm3] 2L_13925942_SNP [dm6]	A	T	4.434e^-4	0.998	INTRON Ance-3
2R	16562506	2R_16562506_SNP [dm3] 2R_20675001_SNP [dm6]	G	C	4.442e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4476381	3L_4476381_SNP [dm3] 3L_4476381_SNP [dm6]	T	A	4.453e^-4	0.998	INTERGENIC
2L	4198256	2L_4198256_SNP [dm3] 2L_4198256_SNP [dm6]	T	C	4.458e^-4	0.998	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20128233	3R_20128233_SNP [dm3] 3R_24302511_SNP [dm6]	A	T	4.464e^-4	0.998	INTRON crb
3R	26447809	3R_26447809_SNP [dm3] 3R_30622087_SNP [dm6]	A	G	4.466e^-4	0.998	UPSTREAM CG44954 INTERGENIC
2L	14879177	2L_14879177_SNP [dm3] 2L_14879177_SNP [dm6]	G	A	4.482e^-4	0.998	SYNONYMOUS_CODING Mst35Ba
2R	266788	2R_266788_SNP [dm3] 2R_4379283_SNP [dm6]	G	C	4.486e^-4	0.998	INTRON Gprk1
2L	21757630	2L_21757630_DEL [dm3] 2L_21757630_DEL [dm6]	TATTTTTAGGGGTACACTTT...	T	4.499e^-4	0.998	UPSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	9460536	3R_9460536_SNP [dm3] 3R_13634814_SNP [dm6]	T	A	4.501e^-4	0.998	UTR_3_PRIME CG10841 DOWNSTREAM sqd	TF binding site BDTNP1_TFBS_twi
X	12374544	X_12374544_SNP [dm3] X_12480511_SNP [dm6]	C	T	4.502e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26453038	3R_26453038_SNP [dm3] 3R_30627316_SNP [dm6]	T	C	4.503e^-4	0.998	UTR_3_PRIME CG2267
3R	17762939	3R_17762939_SNP [dm3] 3R_21937217_SNP [dm6]	G	A	4.503e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1977815	2L_1977815_SNP [dm3] 2L_1977815_SNP [dm6]	G	C	4.503e^-4	0.998	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10205949	3L_10205949_SNP [dm3] 3L_10212849_SNP [dm6]	A	T	4.504e^-4	0.998	INTERGENIC
3L	4103169	3L_4103169_SNP [dm3] 3L_4103169_SNP [dm6]	A	G	4.508e^-4	0.998	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11464722	2R_11464722_SNP [dm3] 2R_15577217_SNP [dm6]	G	A	4.510e^-4	0.998	INTERGENIC
2L	7850080	2L_7850080_SNP [dm3] 2L_7850080_SNP [dm6]	A	T	4.513e^-4	0.998	INTRON CG14535
2L	6764106	2L_6764106_SNP [dm3] 2L_6764106_SNP [dm6]	A	G	4.536e^-4	0.998	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	14940103	2L_14940103_SNP [dm3] 2L_14940103_SNP [dm6]	G	C	4.544e^-4	0.998	INTRON CG42313	TF binding site mE1_TFBS_inv
3L	14236976	3L_14236976_SNP [dm3] 3L_14243876_SNP [dm6]	A	G	4.546e^-4	0.998	INTERGENIC
3R	9411204	3R_9411204_INS [dm3] 3R_13585482_INS [dm6]	T	TAT	4.556e^-4	0.998	INTERGENIC
3L	12859024	3L_12859024_SNP [dm3] 3L_12865924_SNP [dm6]	C	T	4.561e^-4	0.998	INTERGENIC
X	20365288	X_20365288_SNP [dm3] X_20494261_SNP [dm6]	T	G	4.565e^-4	0.998	INTRON RhoGAP19D
2R	6618784	2R_6618784_SNP [dm3] 2R_10731279_SNP [dm6]	T	A	4.571e^-4	0.998	UPSTREAM CG7220 & 1 other INTRON CG12338	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21970097	3R_21970097_SNP [dm3] 3R_26144375_SNP [dm6]	G	A	4.571e^-4	0.998	INTERGENIC
2L	17608386	2L_17608386_SNP [dm3] 2L_17608386_SNP [dm6]	C	G	4.578e^-4	0.998	INTERGENIC
3L	15248915	3L_15248915_SNP [dm3] 3L_15255815_SNP [dm6]	C	A	4.578e^-4	0.998	INTERGENIC
2L	22435673	2L_22435673_SNP [dm3] 2L_22542941_SNP [dm6]	C	T	4.583e^-4	0.998	INTRON CG17490
2R	19181571	2R_19181571_SNP [dm3] 2R_23294048_SNP [dm6]	C	T	4.583e^-4	0.998	INTERGENIC
2L	10421566	2L_10421566_SNP [dm3] 2L_10421566_SNP [dm6]	G	A	4.588e^-4	0.998	SYNONYMOUS_CODING pie DOWNSTREAM RfC3	TF binding site mE1_TFBS_sens
X	18630904	X_18630904_SNP [dm3] X_18736871_SNP [dm6]	G	C	4.599e^-4	0.998	INTERGENIC
2L	22927990	2L_22927990_DEL [dm3] 2L_23035258_DEL [dm6]	TAGTTTAGACATAG...	T	4.611e^-4	0.998	INTERGENIC
X	19581753	X_19581753_SNP [dm3] X_19687720_SNP [dm6]	C	T	4.613e^-4	0.998	DOWNSTREAM CG14227 & 1 other INTERGENIC
X	7591411	X_7591411_SNP [dm3] X_7697378_SNP [dm6]	T	A	4.620e^-4	0.998	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7356107	X_7356107_SNP [dm3] X_7462074_SNP [dm6]	A	C	4.623e^-4	0.998	UPSTREAM CR44500 INTERGENIC
2R	3462148	2R_3462148_SNP [dm3] 2R_7574643_SNP [dm6]	A	C	4.624e^-4	0.998	INTRON Vps13
3L	20435976	3L_20435976_SNP [dm3] 3L_20442876_SNP [dm6]	T	A	4.642e^-4	0.998	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17469621	3R_17469621_SNP [dm3] 3R_21643899_SNP [dm6]	G	A	4.644e^-4	0.998	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13715430	X_13715430_SNP [dm3] X_13821397_SNP [dm6]	A	C	4.644e^-4	0.998	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	3098457	X_3098457_SNP [dm3] X_3204424_SNP [dm6]	T	G	4.656e^-4	0.998	INTRON dnc	TF binding site mE1_TFBS_inv
2L	6854075	2L_6854075_SNP [dm3] 2L_6854075_SNP [dm6]	G	A	4.657e^-4	0.998	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4191445	2L_4191445_SNP [dm3] 2L_4191445_SNP [dm6]	A	G	4.659e^-4	0.998	INTRON CG3714
2L	3895109	2L_3895109_SNP [dm3] 2L_3895109_SNP [dm6]	G	T	4.668e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_kn
2L	14915016	2L_14915016_SNP [dm3] 2L_14915016_SNP [dm6]	A	T	4.683e^-4	0.998	INTRON CG42313
2R	17679623	2R_17679623_SNP [dm3] 2R_21792118_SNP [dm6]	C	T	4.697e^-4	0.998	UPSTREAM lox2 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	18022939	2L_18022939_SNP [dm3] 2L_18022939_SNP [dm6]	C	A	4.698e^-4	0.998	INTRON rdo
2L	2286400	2L_2286400_SNP [dm3] 2L_2286400_SNP [dm6]	T	C	4.720e^-4	0.998	NON_SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
2L	15088851	2L_15088851_SNP [dm3] 2L_15088851_SNP [dm6]	G	T	4.737e^-4	0.998	INTRON CG15270
2R	11469097	2R_11469097_SNP [dm3] 2R_15581592_SNP [dm6]	C	G	4.740e^-4	0.998	INTERGENIC
X	6431369	X_6431369_SNP [dm3] X_6537336_SNP [dm6]	A	G	4.742e^-4	0.998	SYNONYMOUS_CODING dx
2L	14829422	2L_14829422_SNP [dm3] 2L_14829422_SNP [dm6]	T	A	4.764e^-4	0.998	INTERGENIC
X	364700	X_364700_SNP [dm3] X_470667_SNP [dm6]	C	T	4.765e^-4	0.998	UTR_5_PRIME CG32816 DOWNSTREAM ebo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	17862872	2L_17862872_SNP [dm3] 2L_17862872_SNP [dm6]	C	A	4.766e^-4	0.998	INTRON CadN2
3R	23492741	3R_23492741_SNP [dm3] 3R_27667019_SNP [dm6]	A	C	4.767e^-4	0.998	INTRON unc80
X	8142379	X_8142379_SNP [dm3] X_8248346_SNP [dm6]	T	C	4.773e^-4	0.998	DOWNSTREAM ND75 & 1 other INTERGENIC
X	16063953	X_16063953_SNP [dm3] X_16169920_SNP [dm6]	G	A	4.779e^-4	0.998	INTERGENIC
3L	24224427	3L_24224427_SNP [dm3] 3L_24231327_SNP [dm6]	A	C	4.784e^-4	0.998	INTRON Snap25
3L	5503818	3L_5503818_SNP [dm3] 3L_5510718_SNP [dm6]	G	C	4.787e^-4	0.998	INTRON CG34342
3L	9323347	3L_9323347_SNP [dm3] 3L_9330247_SNP [dm6]	G	A	4.839e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1966229	X_1966229_SNP [dm3] X_2072196_SNP [dm6]	G	A	4.846e^-4	0.998	UPSTREAM CG4061 & 1 other DOWNSTREAM CR44382 INTRON CG4199	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21007586	X_21007586_SNP [dm3] X_21136559_SNP [dm6]	G	C	4.846e^-4	0.998	SYNONYMOUS_CODING CG34120
3R	25238112	3R_25238112_SNP [dm3] 3R_29412390_SNP [dm6]	C	T	4.849e^-4	0.998	INTRON Ptp99A
X	4479952	X_4479952_SNP [dm3] X_4585919_SNP [dm6]	T	G	4.851e^-4	0.998	INTRON CR32773
X	16022506	X_16022506_SNP [dm3] X_16128473_SNP [dm6]	T	C	4.853e^-4	0.998	INTRON disco-r
X	11175078	X_11175078_SNP [dm3] X_11281045_SNP [dm6]	A	G	4.854e^-4	0.998	INTRON CG44422
2L	6860029	2L_6860029_SNP [dm3] 2L_6860029_SNP [dm6]	G	A	4.854e^-4	0.998	NON_SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10101126	3L_10101126_SNP [dm3] 3L_10108026_SNP [dm6]	T	A	4.868e^-4	0.998	INTRON dpr6
X	18964625	X_18964625_SNP [dm3] X_19070592_SNP [dm6]	A	T	4.869e^-4	0.998	INTERGENIC
3R	23480594	3R_23480594_SNP [dm3] 3R_27654872_SNP [dm6]	T	C	4.876e^-4	0.998	INTRON tau	TF binding site mE1_TFBS_inv
2L	10589208	2L_10589208_SNP [dm3] 2L_10589208_SNP [dm6]	A	G	4.878e^-4	0.998	INTRON Trim9
2R	18742620	2R_18742620_SNP [dm3] 2R_22855097_SNP [dm6]	G	A	4.895e^-4	0.998	DOWNSTREAM inaD INTRON RpL23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6619781	2R_6619781_SNP [dm3] 2R_10732276_SNP [dm6]	T	G	4.906e^-4	0.998	UPSTREAM CG12338 & 1 other INTRON CG7220
3L	10632247	3L_10632247_SNP [dm3] 3L_10639147_SNP [dm6]	T	A	4.907e^-4	0.998	UPSTREAM CG18628 INTRON CG8009
3R	6385538	3R_6385538_SNP [dm3] 3R_10559816_SNP [dm6]	G	A	4.910e^-4	0.998	INTRON hth	TF binding site BDTNP1_TFBS_dl
X	14385453	X_14385453_SNP [dm3] X_14491420_SNP [dm6]	A	G	4.910e^-4	0.998	INTERGENIC
2L	16419823	2L_16419823_SNP [dm3] 2L_16419823_SNP [dm6]	A	C	4.923e^-4	0.998	INTRON CG5888
3L	12207190	3L_12207190_SNP [dm3] 3L_12214090_SNP [dm6]	C	A	4.940e^-4	0.998	INTRON app
3R	22228774	3R_22228774_SNP [dm3] 3R_26403052_SNP [dm6]	A	T	4.954e^-4	0.998	NON_SYNONYMOUS_CODING ppk15
X	19629218	X_19629218_SNP [dm3] X_19735185_SNP [dm6]	A	G	4.965e^-4	0.998	UPSTREAM CG14234 DOWNSTREAM AP-1-2beta INTERGENIC
2L	4868935	2L_4868935_SNP [dm3] 2L_4868935_SNP [dm6]	C	T	4.977e^-4	0.998	INTRON pog
3R	26442709	3R_26442709_SNP [dm3] 3R_30616987_SNP [dm6]	T	C	4.981e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19454936	2R_19454936_SNP [dm3] 2R_23567413_SNP [dm6]	C	A	4.994e^-4	0.998	UPSTREAM apt INTRON apt
2L	9851729	2L_9851729_SNP [dm3] 2L_9851729_SNP [dm6]	C	T	4.994e^-4	0.998	INTRON nAChRalpha6
2L	14898016	2L_14898016_SNP [dm3] 2L_14898016_SNP [dm6]	G	A	5.019e^-4	0.998	INTERGENIC
2R	19181576	2R_19181576_SNP [dm3] 2R_23294053_SNP [dm6]	T	G	5.021e^-4	0.998	INTERGENIC
2L	10532500	2L_10532500_SNP [dm3] 2L_10532500_SNP [dm6]	T	A	5.030e^-4	0.998	NON_SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
3L	3769653	3L_3769653_INS [dm3] 3L_3769653_INS [dm6]	C	CAA	5.034e^-4	0.998	INTRON CG32264
2L	5251727	2L_5251727_SNP [dm3] 2L_5251727_SNP [dm6]	A	G	5.036e^-4	0.998	INTRON tkv
3R	6931371	3R_6931371_SNP [dm3] 3R_11105649_SNP [dm6]	A	T	5.036e^-4	0.998	INTERGENIC
2L	10678639	2L_10678639_SNP [dm3] 2L_10678639_SNP [dm6]	T	C	5.037e^-4	0.998	SYNONYMOUS_CODING CG17104
3L	8792567	3L_8792567_SNP [dm3] 3L_8799467_SNP [dm6]	G	T	5.043e^-4	0.998	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	13287942	2R_13287942_SNP [dm3] 2R_17400437_SNP [dm6]	G	C	5.044e^-4	0.998	INTRON Sip1
3R	17759444	3R_17759444_SNP [dm3] 3R_21933722_SNP [dm6]	G	T	5.046e^-4	0.998	INTERGENIC
X	17367015	X_17367015_SNP [dm3] X_17472982_SNP [dm6]	G	T	5.048e^-4	0.998	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	6619639	2R_6619639_SNP [dm3] 2R_10732134_SNP [dm6]	G	C	5.052e^-4	0.998	UPSTREAM CG12338 & 1 other INTRON CG7220	TF binding site mE1_TFBS_sens
2L	5212681	2L_5212681_SNP [dm3] 2L_5212681_SNP [dm6]	G	C	5.055e^-4	0.998	DOWNSTREAM Cyp28d1 INTRON CG7742	TF binding site mE1_TFBS_cad
3R	5940583	3R_5940583_SNP [dm3] 3R_10114861_SNP [dm6]	T	A	5.056e^-4	0.998	INTRON CG3940	TF binding site mE1_TFBS_HSA
2L	5747186	2L_5747186_SNP [dm3] 2L_5747186_SNP [dm6]	T	C	5.058e^-4	0.998	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	387227	X_387227_SNP [dm3] X_493194_SNP [dm6]	A	G	5.063e^-4	0.998	UPSTREAM CG17896 INTRON CG17896	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13056425	X_13056425_SNP [dm3] X_13162392_SNP [dm6]	T	C	5.068e^-4	0.998	UTR_3_PRIME CG12096 DOWNSTREAM CG12096 INTRON CG34411
3L	2177728	3L_2177728_SNP [dm3] 3L_2177728_SNP [dm6]	G	T	5.072e^-4	0.998	INTERGENIC
2L	9847525	2L_9847525_SNP [dm3] 2L_9847525_SNP [dm6]	A	C	5.073e^-4	0.998	UPSTREAM CR43766 INTRON nAChRalpha6
3L	13190529	3L_13190529_SNP [dm3] 3L_13197429_SNP [dm6]	C	T	5.075e^-4	0.998	INTERGENIC
3R	11654476	3R_11654476_SNP [dm3] 3R_15828754_SNP [dm6]	G	A	5.080e^-4	0.998	SYNONYMOUS_CODING CG4576 INTRON rec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	478375	3L_478375_SNP [dm3] 3L_478375_SNP [dm6]	G	A	5.088e^-4	0.998	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	6250243	3R_6250243_SNP [dm3] 3R_10424521_SNP [dm6]	A	T	5.090e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12659192	3L_12659192_DEL [dm3] 3L_12666092_DEL [dm6]	CCT	C	5.094e^-4	0.998	INTERGENIC
3R	26140050	3R_26140050_SNP [dm3] 3R_30314328_SNP [dm6]	T	C	5.095e^-4	0.998	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5184906	3L_5184906_SNP [dm3] 3L_5191806_SNP [dm6]	A	T	5.095e^-4	0.998	INTRON shep
X	12375984	X_12375984_SNP [dm3] X_12481951_SNP [dm6]	A	C	5.101e^-4	0.998	INTERGENIC
3R	17469556	3R_17469556_SNP [dm3] 3R_21643834_SNP [dm6]	G	C	5.105e^-4	0.998	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15074188	2R_15074188_SNP [dm3] 2R_19186683_SNP [dm6]	T	C	5.106e^-4	0.998	INTRON hppy
2L	19789176	2L_19789176_SNP [dm3] 2L_19789176_SNP [dm6]	G	A	5.110e^-4	0.998	INTRON CdGAPr
2R	11879539	2R_11879539_SNP [dm3] 2R_15992034_SNP [dm6]	A	G	5.110e^-4	0.998	SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	19323240	2R_19323240_DEL [dm3] 2R_23435717_DEL [dm6]	AG	T	5.116e^-4	0.998	INTERGENIC
3L	20190360	3L_20190360_INS [dm3] 3L_20197260_INS [dm6]	T	TGTAAGT	5.120e^-4	0.998	INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12974069	2R_12974069_SNP [dm3] 2R_17086564_SNP [dm6]	G	A	5.120e^-4	0.998	INTRON CG30460
2R	12974070	2R_12974070_SNP [dm3] 2R_17086565_SNP [dm6]	G	A	5.120e^-4	0.998	INTRON CG30460
3L	14492394	3L_14492394_SNP [dm3] 3L_14499294_SNP [dm6]	G	A	5.127e^-4	0.998	INTRON bbg	TF binding site mE1_TFBS_inv
3L	14227643	3L_14227643_SNP [dm3] 3L_14234543_SNP [dm6]	A	G	5.133e^-4	0.998	UTR_3_PRIME CG7924 DOWNSTREAM CG34244	TF binding site mE1_TFBS_cad
3L	4401245	3L_4401245_SNP [dm3] 3L_4401245_SNP [dm6]	T	A	5.140e^-4	0.998	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7127891	2R_7127891_SNP [dm3] 2R_11240386_SNP [dm6]	G	T	5.151e^-4	0.998	UPSTREAM CG13215 INTERGENIC
2L	14871625	2L_14871625_SNP [dm3] 2L_14871625_SNP [dm6]	C	T	5.157e^-4	0.998	NON_SYNONYMOUS_CODING CG4480
2L	7991220	2L_7991220_SNP [dm3] 2L_7991220_SNP [dm6]	C	T	5.158e^-4	0.998	NON_SYNONYMOUS_CODING pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4401272	3L_4401272_SNP [dm3] 3L_4401272_SNP [dm6]	T	A	5.160e^-4	0.998	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16890291	3L_16890291_SNP [dm3] 3L_16897191_SNP [dm6]	A	G	5.161e^-4	0.998	INTRON Lmpt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11947692	X_11947692_SNP [dm3] X_12053659_SNP [dm6]	T	C	5.162e^-4	0.998	INTRON CR43960 & 1 other
2L	14871799	2L_14871799_SNP [dm3] 2L_14871799_SNP [dm6]	A	G	5.178e^-4	0.998	INTRON CG4480
3L	9487488	3L_9487488_SNP [dm3] 3L_9494388_SNP [dm6]	A	G	5.192e^-4	0.998	DOWNSTREAM path INTERGENIC
2L	22532637	2L_22532637_SNP [dm3] 2L_22639905_SNP [dm6]	C	T	5.199e^-4	0.998	INTRON CG40006
2L	8473633	2L_8473633_SNP [dm3] 2L_8473633_SNP [dm6]	C	T	5.205e^-4	0.998	INTRON d
3R	11417786	3R_11417786_SNP [dm3] 3R_15592064_SNP [dm6]	T	A	5.209e^-4	0.998	INTERGENIC
3L	8885348	3L_8885348_SNP [dm3] 3L_8892248_SNP [dm6]	C	A	5.217e^-4	0.998	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9199593	2L_9199593_INS [dm3] 2L_9199593_INS [dm6]	T	TTCATAA	5.234e^-4	0.998	INTRON tai
3L	1694849	3L_1694849_SNP [dm3] 3L_1694849_SNP [dm6]	G	A	5.248e^-4	0.998	NON_SYNONYMOUS_CODING CG12011 INTRON CG7991
2L	10589198	2L_10589198_SNP [dm3] 2L_10589198_SNP [dm6]	G	A	5.248e^-4	0.998	INTRON Trim9
X	16167905	X_16167905_SNP [dm3] X_16273872_SNP [dm6]	G	A	5.256e^-4	0.998	DOWNSTREAM Mfe2 INTRON kat80
2L	9199595	2L_9199595_SNP [dm3] 2L_9199595_SNP [dm6]	A	C	5.258e^-4	0.998	INTRON tai
2L	14640145	2L_14640145_SNP [dm3] 2L_14640145_SNP [dm6]	G	A	5.263e^-4	0.998	INTRON osp	TF binding site mE1_TFBS_sens
3L	8254654	3L_8254654_SNP [dm3] 3L_8261554_SNP [dm6]	A	C	5.268e^-4	0.998	INTRON Dscam4
3R	19118583	3R_19118583_SNP [dm3] 3R_23292861_SNP [dm6]	G	A	5.280e^-4	0.998	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	10843395	3R_10843395_SNP [dm3] 3R_15017673_SNP [dm6]	G	A	5.284e^-4	0.998	INTERGENIC
2L	8130409	2L_8130409_SNP [dm3] 2L_8130409_SNP [dm6]	G	A	5.285e^-4	0.998	INTRON CG8668
2L	13898743	2L_13898743_SNP [dm3] 2L_13898743_SNP [dm6]	G	T	5.295e^-4	0.998	DOWNSTREAM Smg5 & 1 other INTERGENIC
3L	5354525	3L_5354525_SNP [dm3] 3L_5361425_SNP [dm6]	T	C	5.296e^-4	0.998	INTRON CG4769	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	12407396	X_12407396_SNP [dm3] X_12513363_SNP [dm6]	G	A	5.302e^-4	0.998	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13357146	3L_13357146_SNP [dm3] 3L_13364046_SNP [dm6]	A	G	5.302e^-4	0.998	INTERGENIC
3L	10197215	3L_10197215_SNP [dm3] 3L_10204115_SNP [dm6]	T	A	5.316e^-4	0.998	INTERGENIC
3R	10183654	3R_10183654_SNP [dm3] 3R_14357932_SNP [dm6]	A	G	5.321e^-4	0.998	DOWNSTREAM CG31320 INTRON NK7.1
3L	4647295	3L_4647295_SNP [dm3] 3L_4647295_SNP [dm6]	A	T	5.323e^-4	0.998	UPSTREAM CG32238 INTRON axo
3R	9451738	3R_9451738_SNP [dm3] 3R_13626016_SNP [dm6]	T	A	5.327e^-4	0.998	INTERGENIC
2L	7797329	2L_7797329_SNP [dm3] 2L_7797329_SNP [dm6]	A	T	5.328e^-4	0.998	INTRON Herp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6935040	2L_6935040_SNP [dm3] 2L_6935040_SNP [dm6]	A	G	5.330e^-4	0.998	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
3R	10039316	3R_10039316_SNP [dm3] 3R_14213594_SNP [dm6]	T	G	5.330e^-4	0.998	INTRON Dop1R1
2L	5353038	2L_5353038_SNP [dm3] 2L_5353038_SNP [dm6]	A	G	5.331e^-4	0.998	INTRON nompC
3R	17403950	3R_17403950_SNP [dm3] 3R_21578228_SNP [dm6]	A	G	5.339e^-4	0.998	SYNONYMOUS_CODING InR
3R	6663365	3R_6663365_SNP [dm3] 3R_10837643_SNP [dm6]	C	A	5.345e^-4	0.998	INTRON Cad86C
2R	11211921	2R_11211921_INS [dm3] 2R_15324416_INS [dm6]	A	AA	5.351e^-4	0.998	UTR_3_PRIME Arf51F
2R	14714183	2R_14714183_SNP [dm3] 2R_18826678_SNP [dm6]	T	A	5.360e^-4	0.998	UPSTREAM CG15097 INTRON CG15097
3L	1694539	3L_1694539_SNP [dm3] 3L_1694539_SNP [dm6]	G	A	5.380e^-4	0.998	UPSTREAM CG12011 INTRON CG7991
3L	15786407	3L_15786407_SNP [dm3] 3L_15793307_SNP [dm6]	T	A	5.382e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11533979	3R_11533979_SNP [dm3] 3R_15708257_SNP [dm6]	C	A	5.391e^-4	0.998	UTR_3_PRIME CG5404
2L	22429558	2L_22429558_INS [dm3] 2L_22536826_INS [dm6]	T	TGATTCCTTCTT...	5.399e^-4	0.998	UTR_5_PRIME RpL5 UPSTREAM RpL5 & 1 other	TF binding site mE1_TFBS_Ubx
2L	14871811	2L_14871811_SNP [dm3] 2L_14871811_SNP [dm6]	A	C	5.399e^-4	0.998	INTRON CG4480
2L	4167676	2L_4167676_SNP [dm3] 2L_4167676_SNP [dm6]	A	T	5.399e^-4	0.998	INTERGENIC
2L	22927560	2L_22927560_SNP [dm3] 2L_23034828_SNP [dm6]	T	C	5.410e^-4	0.998	INTERGENIC
2L	13925932	2L_13925932_SNP [dm3] 2L_13925932_SNP [dm6]	A	T	5.414e^-4	0.998	INTRON Ance-3
2L	2684255	2L_2684255_SNP [dm3] 2L_2684255_SNP [dm6]	G	A	5.420e^-4	0.998	INTRON CG31690
2L	17755461	2L_17755461_SNP [dm3] 2L_17755461_SNP [dm6]	G	A	5.429e^-4	0.998	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16880499	3L_16880499_SNP [dm3] 3L_16887399_SNP [dm6]	T	G	5.430e^-4	0.998	INTRON Lmpt
3L	3709946	3L_3709946_SNP [dm3] 3L_3709946_SNP [dm6]	T	G	5.434e^-4	0.998	DOWNSTREAM CR45675 INTERGENIC
2L	16178004	2L_16178004_SNP [dm3] 2L_16178004_SNP [dm6]	A	G	5.437e^-4	0.998	DOWNSTREAM CR43806 INTRON Ca-alpha1D
2R	14634311	2R_14634311_SNP [dm3] 2R_18746806_SNP [dm6]	G	A	5.444e^-4	0.998	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
3L	2574832	3L_2574832_SNP [dm3] 3L_2574832_SNP [dm6]	A	T	5.445e^-4	0.998	INTRON msn
3L	21548736	3L_21548736_SNP [dm3] 3L_21555636_SNP [dm6]	T	G	5.450e^-4	0.998	UTR_3_PRIME CG7173 UPSTREAM Wnk
3R	16087935	3R_16087935_INS [dm3] 3R_20262213_INS [dm6]	T	TT	5.452e^-4	0.998	INTRON cic	TF binding site mE1_TFBS_cad
2L	6248297	2L_6248297_SNP [dm3] 2L_6248297_SNP [dm6]	G	C	5.455e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3704908	2L_3704908_SNP [dm3] 2L_3704908_SNP [dm6]	T	G	5.460e^-4	0.998	NON_SYNONYMOUS_CODING CG31778 DOWNSTREAM CG2816
3R	9562026	3R_9562026_SNP [dm3] 3R_13736304_SNP [dm6]	G	A	5.460e^-4	0.998	INTRON CG34383
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	5.463e^-4	0.998	INTERGENIC
3L	14830372	3L_14830372_SNP [dm3] 3L_14837272_SNP [dm6]	T	G	5.464e^-4	0.998	INTRON CG17839
2L	13836548	2L_13836548_SNP [dm3] 2L_13836548_SNP [dm6]	T	C	5.468e^-4	0.998	INTRON CenG1A
2L	14997710	2L_14997710_SNP [dm3] 2L_14997710_SNP [dm6]	A	G	5.469e^-4	0.998	UPSTREAM mol INTERGENIC	TF binding site mE1_TFBS_Trl
X	1967541	X_1967541_SNP [dm3] X_2073508_SNP [dm6]	C	A	5.471e^-4	0.998	UTR_5_PRIME CG4061 UPSTREAM CG4199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21634214	3L_21634214_SNP [dm3] 3L_21641114_SNP [dm6]	C	A	5.472e^-4	0.998	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	26857309	3R_26857309_SNP [dm3] 3R_31031587_SNP [dm6]	C	A	5.474e^-4	0.998	INTERGENIC
X	17228433	X_17228433_SNP [dm3] X_17334400_SNP [dm6]	G	A	5.482e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13288047	2R_13288047_SNP [dm3] 2R_17400542_SNP [dm6]	C	T	5.503e^-4	0.998	INTRON Sip1
3L	14837999	3L_14837999_SNP [dm3] 3L_14844899_SNP [dm6]	G	A	5.504e^-4	0.998	INTRON CG17839
3L	14255861	3L_14255861_SNP [dm3] 3L_14262761_SNP [dm6]	A	C	5.513e^-4	0.998	INTERGENIC
2L	14942488	2L_14942488_SNP [dm3] 2L_14942488_SNP [dm6]	C	A	5.514e^-4	0.998	INTRON CG42313
2R	13963981	2R_13963981_SNP [dm3] 2R_18076476_SNP [dm6]	C	G	5.517e^-4	0.998	INTRON CG34386
3R	11082588	3R_11082588_SNP [dm3] 3R_15256866_SNP [dm6]	C	G	5.519e^-4	0.998	UTR_3_PRIME CG42404 DOWNSTREAM eIF-2gamma
3R	10360368	3R_10360368_SNP [dm3] 3R_14534646_SNP [dm6]	T	C	5.525e^-4	0.998	INTRON Pde6
3L	21557622	3L_21557622_SNP [dm3] 3L_21564522_SNP [dm6]	T	G	5.533e^-4	0.998	UPSTREAM CG7634 INTERGENIC
3L	9476092	3L_9476092_SNP [dm3] 3L_9482992_SNP [dm6]	A	G	5.539e^-4	0.998	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	353666	X_353666_SNP [dm3] X_459633_SNP [dm6]	C	T	5.542e^-4	0.998	INTRON CG32816	regulatory region REDfly_CRMs
3R	10039324	3R_10039324_DEL [dm3] 3R_14213602_DEL [dm6]	GTACA	G	5.544e^-4	0.998	INTRON Dop1R1
3L	9768280	3L_9768280_SNP [dm3] 3L_9775180_SNP [dm6]	C	T	5.546e^-4	0.998	INTRON CG8177
2R	11875442	2R_11875442_SNP [dm3] 2R_15987937_SNP [dm6]	G	A	5.553e^-4	0.998	UPSTREAM Strn-Mlck INTRON Strn-Mlck EXON CR45021
3L	5353622	3L_5353622_SNP [dm3] 3L_5360522_SNP [dm6]	A	G	5.554e^-4	0.998	INTRON CG4769	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
2L	14550606	2L_14550606_SNP [dm3] 2L_14550606_SNP [dm6]	G	A	5.568e^-4	0.998	EXON CR44853	TF binding site BDTNP1_TFBS_twi
2L	9847523	2L_9847523_SNP [dm3] 2L_9847523_SNP [dm6]	T	G	5.569e^-4	0.998	UPSTREAM CR43766 INTRON nAChRalpha6
2R	14682688	2R_14682688_SNP [dm3] 2R_18795183_SNP [dm6]	G	A	5.572e^-4	0.998	SYNONYMOUS_CODING MFS15 DOWNSTREAM CG15080	TF binding site mE1_TFBS_sens
3R	20463878	3R_20463878_SNP [dm3] 3R_24638156_SNP [dm6]	C	T	5.581e^-4	0.998	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6561608	2R_6561608_SNP [dm3] 2R_10674103_SNP [dm6]	G	A	5.582e^-4	0.998	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3769186	3L_3769186_SNP [dm3] 3L_3769186_SNP [dm6]	A	T	5.594e^-4	0.998	INTRON CG32264
2R	17362980	2R_17362980_SNP [dm3] 2R_21475475_SNP [dm6]	T	G	5.598e^-4	0.998	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

mn_Resp_Benzaldehyde phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results